bacmap_id name description kingdom phylum class order family genus species strain gram shape mobility flagella number_of_membranes oxygen_requirement optimal_temperature energy_source temperature_range habitat biotic_relationship hosts cell_arrangement sporulation pathogenicity ncbi_tax_id accessions Bac0000001 Escherichia coli str. K-12 substr. MG1655 "Escherichia coli str. K-12 substr. MG1655 is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, is categorized as a chemoheterotroph, and is classified as a facultative anaerobe. This versatile organism is found in diverse environments, including the intestines of warm-blooded organisms, soil, and water, illustrating its adaptability to various ecosystems. The gram-negative nature of E. coli K-12 MG1655 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contributes to its pathogenic potential in some strains. The rod shape of this bacterium allows for efficient motility, facilitated by flagella, enabling it to navigate through various environments. Being a mesophilic organism, it prefers a temperature range of approximately 20-45°C, making it well-suited for survival in the gut of mammals where temperatures are typically around 37°C. As a chemoheterotroph, E. coli K-12 MG1655 derives its energy from the consumption of organic compounds, making it reliant on external sources of carbon for growth and metabolism. This bacterium's facultative anaerobic nature allows it to adapt to both aerobic and anaerobic conditions, enabling it to thrive in the oxygen-rich environment of the intestine and switch to fermentation in low-oxygen scenarios. Beyond its ecological importance, E. coli K-12 MG1655 serves as a cornerstone in molecular biology and biotechnology. It is often employed as a model organism for laboratory studies due to its rapid growth rate, ease of genetic manipulation, and safety compared to pathogenic strains. This strain has significantly contributed to advancements in genetic engineering, synthetic biology, and pharmaceuticals, exemplifying its role as a vital tool in scientific research and industrial applications." Pseudomonadati Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli MG1655 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 511145 NC_000913.3 Bac0000002 Haemophilus influenzae Rd KW20 "Haemophilus influenzae Rd KW20 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 35-37 °C. As a chemoheterotroph, it derives its energy from organic compounds, relying on the organic matter present in its environment for growth. This microbe is primarily found in the human respiratory tract, specifically in the nasopharynx and can also be isolated from various other body sites, including the ears, lungs, and sinuses. Classified as a facultative anaerobe, it can live in both aerobic and anaerobic conditions, making it adaptable to a range of environments within the host. H. influenzae Rd KW20 is notable for its role in human health; while it is part of the normal flora of the upper respiratory tract in healthy individuals, it can become pathogenic under certain circumstances. It is known to cause a range of infections, including pneumonia, sinusitis, and otitis media, particularly in children and immunocompromised adults.As a strain in the study of bacterial genetics, H. influenzae Rd KW20 has contributed to significant advancements in the understanding of molecular biology and genetics. Remarkably, it was one of the first organisms to have its genome completely sequenced, providing valuable insights into bacterial evolution, pathogenic mechanisms, and antibiotic resistance. Moreover, its relatively simple genetic makeup makes it an ideal model organism for laboratory studies, facilitating research in areas such as gene expression, protein function, and microbial interactions within the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Rd KW20 Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living Homo sapiens Yes 71421 NC_000907.1 Bac0000003 Escherichia coli O157:H7 str. EDL933 "Escherichia coli is a Gram-negative straight rod, which either uses peritrichous flagella for mobility or is nonmotile. It is a facultatively anaerobic chemoorganotroph capable of both respiratory and fermentative metabolism. E.coli serves a useful function in the body by suppressing the growth of harmful bacterial species and by synthesising appreciable amounts of vitamins. It is an important component of the biosphere. It colonizes the lower gut of animals and survives when released to the natural environment, allowing widespread dissemination to new hosts. Pathogenic E.coli strains are responsible for infection of the enteric, urinary, pulmonary and nervous systems. Comparison of 20 E.coli/Shigella strains shows the core genome to be about 2000 genes while the pan-genome has over 18,000 genes. There are multiple, striking integration hotspots that are conserved across the genomes, corresponding to regions of abundant and parallel insertions and deletions of genetic material.This strain is an avian pathogenic E.coli (APEC), and was isolated from the lung of a chicken with colisepticemia. E.coli APEC O1 is an O1:K1:H7 strain belonging to phylogroup B2 and was chosen for sequencing as it possesses traits characteristics of E.coli which cause disease outside of the intestinal tract i.e. APEC and UPEC (uropathogenic E.coli) strains. It is highly virulent in chickens. It is closely related to E.coli UTI89, a UPEC strain of E.coli (ECOUT). It contains 4 plasmids, pAPEC-O1-ColBM, pAPEC-O1-R, pAPEC-O1-Cryptic1 and pAPEC-O1-Cryptic2. Plasmid pAPEC-O1-ColBM is an F-type plasmid that produces colicins B and M and encodes a putative virulence cluster. Plasmid pAPEC-O1-R encodes resistance to eight antimicrobial agents. The cryptic plasmids are somewhat related to Yersinia-type plasmids and do not confer any apparent phenotypes. (HAMAP: ECOK1)" Pseudomonadati Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli EDL933 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 155864 NC_002655.2 Bac0000004 Mycobacterium tuberculosis H37Rv "Both leprosy and tuberculosis, caused by Mycobacterium leprae and Mycobacterium tuberculosis respectively, have seriously plagued mankind for centuries. With the emergence of antibiotic resistant strains of tuberculosis, research into mycobacteria has become all the more important in combating these modern mutants of ancient pathogens.Both the genomes of Mycobacterium tuberculosis and Mycobacterium leprae have been sequenced with hopes of gaining further understanding of how to defeat the infamously successful pathogens. The genome of M. tuberculosis is 4,411,522 base pairs long with 3,924 predicted protein-coding sequences, and a relatively high G+C content of 65.6%. At 4.4 Mbp, M. tuberculosis is one of the largest known bacterial genomes, coming in just short of E. coli, and a distant third to Streptomyces coelicolor.The genome of Mycobacterium leprae is 3,268,203 base pairs long, with only 1,604 predicted protein-coding regions, and a G+C content of about 57.8%. Only 49.5% of the M. leprae genome contains open reading frames (protein-coding regions), the rest of the genome is comprised of pseudogenes, which are inactive reading frames with recognizable and functional counterparts in M. tuberculosis (27%), and regions that do not appear to be coding at all, and may be gene remnants mutated beyond recognition (23.5%). Of the genome of M. tuberculosis, 90.8% of the genome contains protein-coding sequences with only 6 pseudogenes, compared to the 1,116 pseudogenes on the M. leprae genome.Operating on the assumption that M. leprae was once approximately the size of other mycobacteria, it has significantly downsized and degraded to its current state. If all the genes on the M. leprae genome were active, it would have about 3,000 open reading frames, compared to the 4,000 proteins of M. tuberculosis. Total, over its evolutionary history, M. leprae has lost more than 2,000 genes.Mycobacteria are rod-shaped, Gram-positive aerobes, or facultative anaerobes. As deduced from its genome, M. tuberculosis has the potential to manufacture all of the machinery necessary to synthesize all of its essential vitamins, amino acids, and enzyme co-factors. On the other hand, the inability to culture M. leprae, suggests that it has lost many of its metabolic capabilities, and is now an obligate parasite, dependent on its host for most of its nutritional needs. This goes in accordance with its severely degenerated genome. M. tuberculosis has an unusual cell wall, with an additional layer beyond the peptodiglycan layer, which is rich in unusual lipids, glycolipids, and polysaccharides.It is thought that the more well-known infectious agents such as M. tuberculosis and M. leprae are evolved from a soil bacterium. More specifically, M. tuberculosis arose from a soil bacterium that evolved to infect cows, and then made the jump to humans about the time of animal domestication about 10,000 years ago. M. tuberculosis and M. leprae both grow remarkably slow for bacteria. M. tuberculosis doubles its population every 18-24 hours, while M. leprae doubles its population about every 14 days. This extremely long generation time probably contributes to the chronic nature of both diseases.Both leprosy and tuberculosis, caused by M. leprae and M. tuberculosis respectively, are considered chronic pathogens, causing diseases that takes months, sometimes years, to develop, and, without treatment, eventually result in a slow and excruciatingly painful death. Two of the oldest recognized pathogens, tuberculosis and leprosy have been plaguing mankind since the first stages of domestication some 10,000 years ago. Most mycobacteria do not cause disease, so M. tuberculosis and M. leprae are hardly typical of the genus, and are consequently called 'wayward sons of honorable parents.' In recent years, with the ushering in of the antibiotic age, when penicillin is used to treat everything, new, drug-resistant forms of these pathogens have begun to emerge allowing both diseases to become serious threats to humanity once again. In 1993 with rates of reported cases of tuberculosis on the rise, the World Health Organization declared it a global emergency and began to make efforts to heighten public awareness.In addition to an increase in people contracting tuberculosis, it has formed a deadly partnership with the AIDS virus. The two diseases feed off of each other. With the depleted immune system caused by AIDS comes increased susceptibility to tuberculosis, which in turn accelerates the progress of AIDS.Tuberculosis sets up camp in the lungs of its host, where it, for the most part, coexists with its host while lazily following its daily division routine, yet causing no outward symptoms, but rather just accumulating numbers in order to launch its assault on its unsuspecting host. Macrophages that normally ingest pathogens in order to destroy them, are made into a cozy home by the tubercle bacillus. Tubercolosis is transmitted from person to person through the air, and requires a six to twelve month regimen of at least two drugs to rid its host of the infection. Drug-resistant strains of the pathogen are mainly the result of patients not following directions in the taking of their medication, and thus do not kill off the disease entirely.Leprosy, popularly thought to be a disease of the past, has over 690,000 new cases reported annually, but the mode of transmission still remains a mystery. The infection is very slow to develop, taking anywhere from six months to ten years. Leprosy is a neurological disease, that mainly accumulates in the extremities, and inhabits macrophages through which it infects the Schwann cells of the peripheral nervous system. The lack of myelin produced by the infected Schwann cells leads to nerve damage, and sensory loss. There are two forms of leprosy, tuberculin and lepromatous. Lepromatous leprosy is the more contagious form, in which the body is unable to mount a resistance, and the bacterium freely multiplies in the skin, causing nodules to appear all over the body and face. It also infects the mucous membranes of the nose and throat, creating a rather disturbing physique. Tuberculin leprosy causes an immune defense in which the body's cells crowd around the invading organisms in the deep skin layers, which causes hair follicles, sweat glands, and nerve endings at the site to be destroyed. The skin then becomes dry and discolored and loses feeling. This most often affects the fingers and toes which are now fragile and injury prone, and often become mutilated and fall off. (From http://microbewiki.kenyon.edu/index.php/Mycobacterium) (MicrobeWiki: Mycobacterium)" Bacillati Actinobacteria Actinobacteria Actinomycetales Mycobacteriaceae Mycobacterium tuberculosis H37Rv Positive Bacilli No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 83332 NC_000962.3 Bac0000005 Salmonella enterica subsp. enterica serovar Typhimurium "Salmonella enterica subsp. enterica serovar Typhimurium is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, classifying it as a facultative anaerobe and a chemoheterotroph. This microbe is capable of surviving in various body sites across multiple species, including the gastrointestinal tracts of mammals, birds, reptiles, and even humans, highlighting its ecological versatility. As a Gram-negative organism, S. Typhimurium possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can contribute to its virulence and ability to evade the host immune response. Its rod shape allows for motility, facilitated by flagella, enabling efficient movement through viscous environments such as the intestinal lumen, where it often resides. Being mesophilic, it optimally grows at temperatures around 37°C, aligning with the internal body temperature of its warm-blooded hosts. As a facultative anaerobe, S. Typhimurium can generate energy both in the presence and absence of oxygen, demonstrating metabolic flexibility that enhances its survival in diverse environments. Its classification as a chemoheterotroph indicates that it derives energy and carbon from organic compounds, often utilizing nutrients found in the gut. This bacterium is notorious for its role in foodborne illnesses, commonly associated with the consumption of undercooked poultry, eggs, and other contaminated foods. Symptoms of infection can include diarrhea, fever, and abdominal cramps, often resulting from the organism's ability to invade intestinal epithelial cells and elicit strong immune responses. Additionally, S. Typhimurium has been extensively studied in laboratories, serving as a model organism for understanding bacterial pathogenesis and host interactions, as well as the development of antimicrobial strategies." Pseudomonadati Proteobacteria Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella enterica Typhimurium Negative Rod Yes Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 90371 NZ_AP014565.1 Bac0000006 Mycoplasmoides pneumoniae M129 Bacillati Tenericutes Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasmoides pneumoniae M129 negative aerobic 272634 NC_000912.1 Bac0000007 Xylella fastidiosa Temecula1 "Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Proteobacteria Gammaproteobacteria Xanthomonadales Xanthomonadaceae Xylella fastidiosa Temecula1 Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Grapevine Singles No 183190 NC_004556 Bac0000008 Pseudomonas syringae pv. aceris "Pseudomonas syringae pv. aceris is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a heterotrophic aerobe. This microbe's ability to thrive in various habitats suggests its ecological versatility, allowing it to utilize a range of organic compounds as energy sources. ↵↵As a member of the Pseudomonas genus, P. syringae pv. aceris is adapted to aerobic environments, which may include diverse ecological niches such as soil, water, and plant surfaces. Its heterotrophic lifestyle indicates that it derives its nutrients from organic matter, which may contribute to its role in nutrient cycling within these ecosystems.↵↵The ecological implications of Pseudomonas syringae pv. aceris are significant, as its presence in diverse environments suggests potential interactions with other microorganisms and plant communities. The bacterium's unique metabolic capabilities may facilitate its involvement in the breakdown of organic materials, thus influencing soil health and plant growth dynamics. Further studies are warranted to explore the specific roles this microbe plays in its habitats, particularly in relation to its interactions with plant hosts and other microbial populations." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 199198 LJPM00000000.1 Bac0000009 Mesorhizobium opportunistum WSM2075 Mesorhizobium opportunistum WSM2075.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium opportunistum WSM2075 Negative Bacilli Yes Aerobic Mesophilic HostAssociated Symbiotic Biserrula pelecinus L 536019 NC_015675.1 Bac0000010 Shewanella algae "Shewanella algae is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. As a facultative heterotroph, it possesses the flexibility to utilize a variety of organic compounds as energy sources, allowing it to thrive in diverse habitats. This metabolic versatility enables S. algae to adapt to environments with varying oxygen availability, making it capable of surviving in both aerobic and anaerobic conditions.↵↵The ecological significance of Shewanella algae is highlighted by its ability to participate in biogeochemical cycles, particularly in aquatic environments where organic matter decomposition occurs. Its presence in multiple habitats suggests a role in nutrient cycling and the breakdown of organic materials, contributing to ecosystem dynamics. Furthermore, the adaptability of S. algae to fluctuating oxygen levels may indicate its potential involvement in bioremediation processes, where it could help mitigate pollution by degrading harmful organic compounds. This ability to thrive in heterogeneous environments underscores the ecological resilience of Shewanella algae and its importance in microbial community interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella algae Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Multiple Free living Pairs - Singles 24 UGYO00000000.1 Bac0000011 Shewanella baltica "Shewanella baltica is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe is recognized for its heterotrophic metabolism, utilizing organic compounds as its energy source, which allows it to thrive in diverse habitats. Furthermore, S. baltica is classified as a facultative anaerobe, enabling it to adapt to varying oxygen conditions by switching between aerobic respiration and fermentation depending on the availability of oxygen in its environment.↵↵The versatility of S. baltica in energy acquisition and oxygen utilization suggests that it plays a significant role in biogeochemical cycles, particularly in marine and sedimentary ecosystems. Its ability to metabolize a wide range of organic substrates may contribute to the degradation of complex organic matter, thereby influencing nutrient cycling and ecosystem dynamics. This adaptability not only highlights the ecological significance of S. baltica but also underscores its potential applications in bioremediation and environmental biotechnology. Understanding the functional traits of S. baltica within its ecological contexts can provide insights into microbial interactions and the resilience of microbial communities in fluctuating environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Multiple Free living Pairs - Singles 24 NZ_LR134321.1 Bac0000012 Myxococcus fulvus "Myxococcus fulvus is a species of bacteria characterized by its coccoid shape. This microbe is notable for its social behavior, which is reflected in its ability to form multicellular structures during its life cycle. Myxococcus fulvus exhibits complex interactions with its environment, particularly in its predatory lifestyle, where it can prey on other microorganisms. This predation is facilitated by the secretion of enzymes that break down complex organic materials, highlighting its role as a decomposer in microbial communities.↵↵The bacterium is known to engage in cooperative behavior, allowing cells to work together to achieve growth and survival in nutrient-limited conditions. This cooperative strategy is a defining feature of its life cycle, as it can lead to the formation of fruiting bodies that allow for the dissemination of spores under unfavorable environmental conditions. ↵↵Myxococcus fulvus is a model organism for studying social behavior in bacteria and the mechanisms of multicellularity. Its unique traits make it an important subject for research into microbial ecology, particularly in understanding how cooperative interactions influence community dynamics and nutrient cycling in soil ecosystems. The study of Myxococcus fulvus may provide insights into the evolutionary advantages of social living among prokaryotes, shedding light on the complex interplay between microbial species in their natural habitats." Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus Cocci 33 FOIB00000000.1 Bac0000013 Stigmatella aurantiaca Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca 41 FOAP00000000.1 Bac0000014 Cystobacter fuscus str. DSM 52655 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus 43 NZ_CP022098.1 Bac0000015 Sorangium cellulosum str. So0003-19-2 Pseudomonadati Myxococcota Polyangia Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 56 JELZ00000000.1 Bac0000016 Sorangium cellulosum str. So0008-312 Pseudomonadati Myxococcota Polyangia Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 56 JEMA00000000.1 Bac0000017 Enterococcus faecium 1 231 409 "Enterococcus faecium 1 231 409 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This species belongs to the genus Enterococcus, which is known for its resilience in diverse environments, allowing it to thrive both in the presence and absence of oxygen. Enterococcus faecium is commonly found in various habitats, including the gastrointestinal tracts of humans and animals, as well as in environmental sources such as soil and water.↵↵The facultative anaerobic nature of E. faecium 1 231 409 enables it to adapt to fluctuating oxygen levels, which is a significant trait for survival in complex ecosystems. This adaptability is crucial for its persistence in both commensal and challenging environments, particularly in the context of microbial communities where competition for resources can be intense.↵↵As a member of the Enterococcus genus, E. faecium 1 231 409 not only plays a role in the gut microbiota but also has implications for food safety and public health due to its potential resistance to antibiotics. Its Gram-positive cell wall structure contributes to its robustness against environmental stresses, enhancing its survival in various conditions. ↵↵Overall, Enterococcus faecium 1 231 409 exemplifies the versatility of enterococci in different ecological niches, highlighting the importance of studying such microbes to understand their roles in health, disease, and environmental dynamics." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 63 ACAY00000000.1 Bac0000018 Vitreoscilla filiformis Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Vitreoscilla Vitreoscilla filiformis 63 NZ_CP022423.1 Bac0000019 Hyphomicrobium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium sp. 82 PERI00000000.1 Bac0000020 Hyphomonas sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas sp. Arctic Ocean; Atlantic Ocean; Baltic Sea; coastal regions; Heita Bay; Marine; Milazzo Harbor; oceanic areas; oil reservoirs; Pacific Ocean; South China Sea; Thames Estuary; Western Pacific sediment 87 PAQD00000000.1 Bac0000021 Allostella humosa Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Allostellaceae Allostella Allostella humosa 94 RJKX00000000.1 Bac0000022 Ancylobacter aquaticus str. DSM 101 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Ancylobacter Ancylobacter aquaticus 100 SMFY00000000.1 Bac0000023 Polaribacter glomeratus str. ATCC 43844 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter glomeratus 102 MSCM00000000.1 Bac0000024 Blastopirellula marina str. NAP PRIS-MGV Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Blastopirellula Blastopirellula marina 124 PUIB00000000.1 Bac0000025 Blastopirellula marina str. Hex-2 MGV Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Blastopirellula Blastopirellula marina 124 PUIA00000000.1 Bac0000026 Luteipulveratus mongoliensis str. MN07-A0370 T (=NBRC 105296(T)=VTCC D9-09(T) "Luteipulveratus mongoliensis str. MN07-A0370 T (also referred to as NBRC 105296(T) and VTCC D9-09(T)) is a Gram-positive, spherical bacterium that exhibits aerobic metabolism and is characterized by its non-spore-forming nature. This microbe thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions.↵↵As a member of the Luteipulveratus genus, the traits of L. mongoliensis str. MN07-A0370 T indicate its potential role in various ecological contexts, particularly in environments where aerobic degradation processes are prevalent. The spherical morphology and Gram-positive status suggest that it may possess unique cell wall structures, which could influence its interactions with other microorganisms and its resilience in its habitat. ↵↵Given that this strain does not form spores, it may rely on other survival strategies in fluctuating environmental conditions, which could include the production of extracellular polysaccharides or other protective compounds. This characteristic might allow L. mongoliensis to maintain its viability in diverse ecosystems, further highlighting its potential ecological significance in nutrient cycling and microbial community dynamics." Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Luteipulveratus Luteipulveratus mongoliensis Gram-positive sphere non-motile aerobic 25 mesophilic non-spore-forming 129 NZ_CP011112.1 Bac0000027 Legionella oakridgensis ATCC 33761 = DSM 21215 str. OR-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella oakridgensis 134 NZ_CP004007.1 Bac0000028 Borrelia hermsii Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia hermsii Yes 140 NZ_CP014829.1 Bac0000029 Borrelia turicatae str. BTE5EL Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia turicatae 142 NZ_CP015630.1 Bac0000030 Brachyspira hyodysenteriae str. BH718 "Brachyspira hyodysenteriae strain BH718 is a Gram-negative, nonsporulating bacterium characterized by its spirilla shape and arrangement in singles. It is classified as a chemoheterotroph, deriving its energy from organic compounds, and it thrives in anaerobic conditions, indicating a specialized adaptation to low-oxygen environments. The optimal growth temperature for strain BH718 is approximately 37.0°C, which aligns with the physiological conditions typically found in warm-blooded hosts.↵↵This microbe has been isolated from multiple habitats, suggesting its potential versatility in colonizing diverse ecological niches, although specific details regarding these habitats remain unspecified. The presence of Brachyspira hyodysenteriae in various environments underscores its adaptability and may reflect its role in the microbiota of different hosts. Understanding the ecological dynamics of B. hyodysenteriae strain BH718 can provide insights into its interactions within microbial communities, particularly in anaerobic ecosystems, where it may play a significant role in nutrient cycling and host-microbe interactions. Further studies could elucidate its specific ecological functions and contributions to the environments it inhabits." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae Negative Spirilla Yes 1 2 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Free living Singles Nonsporulating 159 NZ_CP019601.1 Bac0000031 Treponema bryantii "Treponema bryantii is a thermophilic, chemoheterotrophic microbe that thrives in environments with temperatures between 45°C to 65°C, making it a member of the Temperature preference category ""Thermophilic"". It derives its energy through chemoheterotrophy, breaking down organic compounds for sustenance. Energy production is achieved through the process of anaerobic fermentation, producing acetate and hydrogen gas as byproducts. On a microscopic scale, Treponema bryantii is a Gram-negative bacterium, characterized by its distinctive spiral shape, a morphology typical of the genus Treponema. This spiral shape allows the bacterium to penetrate the mucus layers of the host and colonize the epithelial surfaces. As a chemoheterotroph, T. bryantii can tolerate a wide range of oxygen levels, making it an aerotolerant anaerobe. This means that while it can survive in the presence of oxygen, it does not require it for growth and can thrive in anaerobic environments. Treponema bryantii has been isolated from various body sites across all possible species, including the human gut microbiome, where it plays a crucial role in the degradation of complex polysaccharides. In recent studies, T. bryantii has been found to exhibit remarkable resilience in the face of environmental stressors, such as high concentrations of heavy metals and antibiotics. Its ability to adapt and thrive in these conditions makes it an attractive subject for research in the fields of applied microbiology and biotechnology. Overall, Treponema bryantii is a fascinating microorganism that has evolved to occupy a unique ecological niche, leveraging its thermophilic and chemoheterotrophic properties to excel in environments where few other microbes can survive. Its impressive adaptability and metabolic versatility render it a valuable asset for the discovery of novel enzymes and compounds with potential biotechnological applications." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema bryantii Yes 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 163 FOFU00000000.1 Bac0000032 Treponema sp. "Treponema sp. is a genus of spiral-shaped, filamentous bacteria known for its anaerobic lifestyle and chemoheterotrophic metabolism. These microorganisms are typically found in an array of environments, including the human host, where they play a significant role in various ecological niches. Treponema species are most commonly recognized for their association with animal and human diseases, most notably in the context of syphilis and other treponemal infections. The organism's unique spirilla structure facilitates motility through a twisting motion, allowing it to navigate the viscous environments typical of mucosal surfaces. Being nonsporulating, Treponema sp. relies on the availability of organic compounds in their surroundings, as they cannot form spores to withstand harsh conditions. Their anaerobic nature means they thrive in low-oxygen environments, which is particularly significant in host tissues and certain soil habitats where oxygen availability is limited. Ecologically, Treponema spp. are vital for nutrient cycling, particularly in anaerobic environments such as the intestines of various animals, where they help in the breakdown of complex organic materials. This breakdown contributes to the overall health of the ecosystem by facilitating nutrient availability for other microorganisms, thereby influencing the dynamics of microbial communities. Moreover, their presence in human hosts highlights their dual role as both symbionts and pathogens, underlining the intricate balance of microbial interactions within biological systems." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. Spirilla Yes 1 Anaerobic Chemoheterotroph Multiple Filaments Nonsporulating 166 PDOP00000000.1 Bac0000033 Azospirillum argentinense "Azospirillum argentinense is a Gram-positive, rod-shaped bacterium primarily found in the rhizosphere of various plants, as well as in soil environments. This microaerophilic organism thrives in conditions with limited oxygen availability, which is characteristic of its ecological niche associated with plant roots. ↵↵Azospirillum argentinense is particularly noted for its role in plant growth promotion, as it is capable of forming beneficial associations with various plant species. By colonizing the rhizosphere, this bacterium can enhance nutrient availability and uptake, contributing to overall plant health and productivity. The microaerophilic nature of A. argentinense suggests that it has adapted to exploit specific microenvironments within the soil that provide optimal oxygen levels conducive to its metabolic processes.↵↵The unique ecological insight into Azospirillum argentinense lies in its potential contribution to sustainable agriculture. By fostering beneficial plant-microbe interactions, this bacterium may play a significant role in enhancing soil fertility and promoting plant growth, which aligns with modern agricultural practices aimed at reducing chemical inputs and improving crop resilience." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 NZ_CP032327.1 Bac0000034 Azospirillum brasilense str. 2A1 "Azospirillum brasilense strain 2A1 is a Gram-positive, rod-shaped bacterium primarily inhabiting the rhizosphere of various plants, as well as soil environments. This microbe exhibits a microaerophilic oxygen requirement, indicating that it thrives in environments with low levels of oxygen, which is typical of many rhizosphere habitats where it interacts closely with plant roots.↵↵The association of Azospirillum brasilense with plant roots is significant, as it plays a role in promoting plant growth through various mechanisms, including the potential for nitrogen fixation and the enhancement of nutrient uptake. This interaction underscores the ecological importance of strain 2A1 in agricultural and natural soil systems, where it may contribute to soil fertility and plant health.↵↵Furthermore, the microaerophilic nature of Azospirillum brasilense strain 2A1 suggests its adaptation to the oxygen-poor conditions found in the soil rhizosphere, allowing it to occupy a niche that many other microorganisms cannot exploit. This ability to thrive in such specific conditions highlights its potential role in facilitating plant-microbe interactions that are essential for sustainable agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum brasilense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 NOWT00000000.1 Bac0000035 Azospirillum brasilense "Azospirillum brasilense is a Gram-positive, rod-shaped bacterium known for its association with plant roots, particularly within the rhizosphere and soil environments. This microaerophilic organism thrives in conditions with limited oxygen, which is characteristic of its ecological niches. A. brasilense is recognized for its role in promoting plant growth, likely due to its capacity for nitrogen fixation and its interactions with plant root systems.↵↵In addition to its beneficial effects on plants, A. brasilense's presence in the rhizosphere underscores its importance in soil health and nutrient cycling. By colonizing the root surfaces, it forms a symbiotic relationship with various plants, enhancing their nutrient uptake and overall vigor. This bacterium's adaptation to microaerophilic conditions allows it to effectively utilize the oxygen available in the soil while contributing to the maintenance of soil structure and fertility.↵↵The ability of Azospirillum brasilense to thrive in the rhizosphere highlights its potential for use in sustainable agriculture practices. Its interactions with plants not only promote growth but may also aid in the resilience of crops against environmental stresses. Understanding the mechanisms by which A. brasilense enhances plant health could provide valuable insights for developing eco-friendly agricultural strategies." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum brasilense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 QFOX00000000.1 Bac0000036 Azospirillum argentinense str. Az39 "Azospirillum argentinense strain Az39 is a Gram-positive, rod-shaped bacterium predominantly found in the rhizosphere of plants and in various soil environments. This microbe exhibits a microaerophilic oxygen requirement, suggesting that it thrives in conditions with limited oxygen availability, which is characteristic of the soil rhizosphere where it resides. The association of A. argentinense with plant roots indicates its potential role in promoting plant growth and enhancing soil health.↵↵As a member of the Azospirillum genus, Azospirillum argentinense str. Az39 is likely to engage in beneficial interactions with plant hosts, although specific mechanisms of action are not detailed in the available data. The presence of this bacterium in the rhizosphere hints at its involvement in nitrogen fixation and other plant-growth-promoting activities, which could be essential for the sustainability of agricultural practices.↵↵Furthermore, the habitat preferences of A. argentinense str. Az39 underscore its ecological significance in maintaining soil fertility and health, particularly in microaerophilic environments where other microorganisms might not thrive. This characteristic may enable the strain to contribute uniquely to nutrient cycling and soil structure in its native habitat. Overall, Azospirillum argentinense str. Az39 exemplifies the intricate relationships between soil microbes and plant roots, highlighting the importance of microbial diversity in soil ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 NZ_CP007793.1 Bac0000037 Azospirillum argentinense str. Az40 "Azospirillum argentinense str. Az40 is a Gram-positive, rod-shaped bacterium that inhabits the rhizosphere of plants as well as the surrounding soil environment. This microbe is categorized as microaerophilic, indicating that it thrives in environments with reduced oxygen concentrations. ↵↵A. argentinense str. Az40 is particularly notable for its association with plant roots, where it may play a role in promoting plant growth and enhancing nutrient uptake. The bacterium’s presence in the rhizosphere suggests potential interactions with plant root systems, which could involve mechanisms such as nitrogen fixation or the production of phytohormones. ↵↵The ecological significance of A. argentinense str. Az40 extends to its ability to inhabit soil environments, where it may contribute to soil health and fertility through its metabolic activities. This microbe's adaptability to microaerophilic conditions further indicates its potential to thrive in diverse soil types, which can vary in oxygen availability. As such, A. argentinense str. Az40 serves as a model organism for studying beneficial plant-microbe interactions and the microbial ecology of the rhizosphere, highlighting the intricate relationships that exist between soil-dwelling bacteria and plant health." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 NZ_CP007795.1 Bac0000038 Azospirillum argentinense str. Az41 "Azospirillum argentinense str. Az41 is a Gram-positive, microaerophilic bacterium characterized by its rod-like shape. This strain is predominantly found in the rhizosphere of various plants, where it inhabits the soil and root environments. As a member of the Azospirillum genus, A. argentinense is known for its association with plant roots, which plays a significant role in promoting plant growth through various mechanisms, including nitrogen fixation and the enhancement of nutrient uptake.↵↵In the rhizosphere, A. argentinense str. Az41 can interact with plant roots, potentially leading to symbiotic relationships that benefit both the microbe and the host plant. The microaerophilic nature of this strain suggests that it thrives in environments with low oxygen levels, which is typical of the soil rhizosphere where oxygen depletion can occur due to microbial activity and plant respiration.↵↵The ecological role of Azospirillum argentinense str. Az41 in the rhizosphere may extend beyond nitrogen fixation; its presence could influence soil health and fertility, contributing to the overall dynamics of the microbial community in plant-associated environments. Understanding the specific interactions and benefits provided by this strain could offer insights into sustainable agricultural practices and the management of soil microbiomes for enhanced crop productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 NZ_CP007796.1 Bac0000039 Azospirillum lipoferum Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum lipoferum rhizosphere associative symbioses 193 FXBR00000000.1 Bac0000040 Campylobacter coli "Campylobacter coli is a gram-negative, spiral-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites of humans and animals, including the gastrointestinal tract, reproductive system, and respiratory system, across all possible species. As a microaerophile, Campylobacter coli requires a low-oxygen environment to grow, which is typically between 2-10% oxygen.The gram-negative characteristic of Campylobacter coli indicates that it has a thin peptidoglycan layer in its cell wall, making it more resistant to certain antibiotics. Its spiral shape allows it to move efficiently through mucus and other viscous environments, facilitating its colonization and infection of host tissues. The mesophilic temperature preference of Campylobacter coli means it grows best at temperatures between 25-45°C, which is consistent with the temperatures found in the human body. As a chemoheterotroph, Campylobacter coli relies on organic compounds for energy and carbon, which it obtains from its host or environment. Campylobacter coli can infect a wide range of hosts, including humans, pigs, birds, and cattle, causing gastrointestinal disease and other infections. The microbe's ability to colonize different body sites and species is due to its adaptability and virulence factors, such as its flagella and adhesion proteins. Campylobacter coli has been isolated from various environments, including water, soil, and food, highlighting its widespread presence and potential for transmission. This microbe is responsible for a significant proportion of foodborne illnesses, particularly those associated with undercooked poultry and pork products, and its ability to form biofilms on food and surfaces makes it challenging to eradicate." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 ROKQ00000000.1 Bac0000041 Campylobacter coli str. OR12 "Campylobacter coli str. OR12 is a Gram-negative bacterium characterized by its microaerophilic nature, which necessitates a low-oxygen environment for optimal growth. This species is part of the Campylobacter genus, which is known for its distinctive spiral shape and motility, facilitated by a single polar flagellum. The microaerophilic requirement generally indicates that C. coli str. OR12 thrives in environments where oxygen levels are lower than atmospheric concentration, such as the gastrointestinal tracts of various animals.↵↵As a member of the Campylobacter family, this strain may play a role in the complex microbial communities present in animal intestines, contributing to the overall gut microbiota dynamics. Its adaptation to microaerophilic conditions suggests a specialization for environments rich in organic matter and nutrient availability, which are often encountered in anaerobic habitats. Furthermore, the traits of C. coli str. OR12 may provide insights into its potential interactions with host organisms and its ecological niche, highlighting the importance of microaerophilic bacteria in nutrient cycling and gut health.↵↵Ultimately, the specific metabolic pathways utilized by C. coli str. OR12 in low-oxygen conditions could provide valuable information regarding its ecological role, particularly in relation to its interactions with other gut microbiota and its contributions to the host's digestive processes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 NZ_CP013736.1 Bac0000042 Campylobacter fetus "Campylobacter fetus is a gram-negative, spiral-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites of numerous species, including the intestinal tract, reproductive organs, and bloodstream, across different animal hosts, from humans to cattle, pigs, and sheep. As a microaerophile, it requires a low-oxygen environment to survive, which is reflected in its optimal growth conditions. The gram-negative characteristic of Campylobacter fetus indicates that it has a thin peptidoglycan layer in its cell wall, making it more resistant to certain antibiotics. Its spiral shape allows it to penetrate mucosal surfaces, contributing to its pathogenicity. As a mesophile, Campylobacter fetus grows best at temperatures between 25°C and 45°C, which is typical for many pathogens that infect warm-blooded hosts. As a chemoheterotroph, Campylobacter fetus relies on organic compounds for energy and carbon, which it obtains from its host or environment. This characteristic is essential for its survival and ability to cause disease. The microbe's presence in various body sites across different species highlights its adaptability and ability to infect a wide range of hosts. Campylobacter fetus is also capable of causing disease in humans, particularly in those with compromised immune systems. Its ability to infect the intestinal tract and other body sites can lead to severe complications, including bacteremia and sepsis. The microbe's resistance to certain antibiotics and its ability to form biofilms make treatment challenging. Campylobacter fetus has been identified as a major cause of spontaneous abortions in cattle, resulting in significant economic losses for the livestock industry, and its ability to infect humans through contaminated food and water highlights the need for proper food handling and hygiene practices to prevent the spread of this microbe." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus Negative Spirilla Yes 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 196 MTDX00000000.1 Bac0000043 Campylobacter jejuni "Campylobacter jejuni is a gram-negative, spiral-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites of numerous species, including the gastrointestinal tracts of humans, birds, and animals, and is a microaerophile. As a gram-negative microbe, C. jejuni has a thin peptidoglycan layer in its cell wall, which is susceptible to certain antibiotics. Its spiral shape allows it to move efficiently through mucus-lined environments, such as the intestinal tract. The mesophilic temperature preference of C. jejuni enables it to grow optimally at temperatures between 37°C and 42°C, which is consistent with the average human body temperature. As a chemoheterotroph, C. jejuni relies on the consumption of organic compounds for energy and carbon sources, and it can be found in various body sites, including the intestinal tract, bloodstream, and reproductive organs, of many species. The microaerophilic nature of C. jejuni means it requires a low-oxygen environment to grow, which is typically found in the intestinal mucosa. The shape and motility of C. jejuni allow it to penetrate the mucous lining of the intestinal tract, where it can cause infections. Its chemoheterotrophic metabolism enables it to utilize a variety of organic compounds, including amino acids, carbohydrates, and fatty acids, as energy sources. C. jejuni is commonly found in the gastrointestinal tracts of many species, where it can cause disease. In humans, C. jejuni is a leading cause of gastroenteritis, and its ability to infect a wide range of hosts makes it a significant public health concern. C. jejuni has been shown to have a complex relationship with its hosts, and it can even manipulate the host's immune system to evade detection, making it a formidable pathogen. The genome of C. jejuni has been fully sequenced, revealing a high degree of genetic diversity, which may contribute to its ability to infect a wide range of hosts and evade the host's immune system." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 MOUV00000000.1 Bac0000044 Salmonella enterica subsp. enterica serovar 4 "Salmonella enterica subsp. enterica serovar 4 is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This microbe is a chemoorganotroph, deriving its energy from organic compounds, which aligns with its habitat being host-associated, suggesting a close relationship with living hosts. The optimal growth temperature for S. enterica serovar 4 is approximately 37.0°C, which corresponds to the body temperature of many warm-blooded animals, including humans. The microbe exhibits microaerophilic characteristics, indicating that it thrives in environments with reduced oxygen levels, a trait that may contribute to its survival within the host's gastrointestinal tract.↵↵The combination of these traits highlights the bacterium's adaptation to a specific niche, where it can effectively exploit host-derived organic materials while navigating the oxygen-limited conditions often present in such environments. Understanding the ecological role of S. enterica serovar 4 within its host may provide insights into its interactions with the host's microbiota and the potential implications for host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 199 QBGG00000000.1 Bac0000045 Campylobacter concisus "Campylobacter concisus is a Gram-negative, spiral-shaped bacterium that thrives in warm environments, specifically at temperatures between 37°C and 42°C, placing it in the temperate preference category. Its metabolism is heterotrophic, relying on organic compounds as its energy source. Energy production is achieved through the process of oxidative phosphorylation, utilizing oxygen as a terminal electron acceptor. The bacteria's Gram stain characteristic is negative, indicating the presence of a weak peptidoglycan layer. The morphology of C. concisus is characterized by its spiral shape, with a length of approximately 0.5-2.5 μm and a width of 0.2-0.8 μm. It is a widely distributed microbe, found in various body sites, including the stomach, small intestine, and colon, and can even be isolated from the mouth and throat. C. concisus is an obligate anaerobe, requiring a reduced oxygen environment to survive. It is unable to tolerate high levels of oxygen, which would be toxic to the bacteria. In its natural habitat, it thrives in an environment with low oxygen levels, such as the gut microbiome. Some studies have reported the presence of C. concisus in the human gut microbiome, where it is thought to play a role in the immune response and the development of certain diseases, such as inflammatory bowel disease. Despite its potential to cause disease, C. concisus is a normal inhabitant of the human gut, and its presence is often overlooked in routine microbiological investigations. Along with its role in the gut microbiome, C. concisus has also been linked to oral infections, such as periodontitis and dental caries. Its ability to adapt to different environments and its ability to form biofilms on tooth surfaces make it a significant player in oral health and disease. The study of C. concisus has led to a greater understanding of the complex relationships between the gut microbiome, the immune system, and the development of disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 LVWL00000000.1 Bac0000046 Campylobacter concisus str. ATCC 33237 "Campylobacter concisus strain ATCC 33237 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. As a microaerophilic organism, it thrives in environments with reduced oxygen levels, which is reflective of its habitat associated with host organisms. This particular strain is often found in the gastrointestinal tract of mammals, suggesting a potential role in the microbial communities residing within host intestines. The microaerophilic nature of C. concisus indicates that it may be adapted to specific niches within the host that are low in oxygen, which could influence its interactions with other microbial species. Understanding the ecological role of C. concisus in host-associated environments may provide insights into its contribution to gut microbiota dynamics and potential interactions with host immune responses." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 NZ_CP012541.1 Bac0000047 Campylobacter concisus str. Lasto28.99 "Campylobacter concisus strain Lasto28.99 is a Gram-negative microbe characterized by its spirilla shape and tendency to form chains or occur as singles. This organism is classified as microaerophilic, indicating that it requires reduced levels of oxygen for optimal growth, which is typical for many members of the Campylobacter genus. C. concisus strain Lasto28.99 is primarily host-associated, suggesting that it resides within specific hosts rather than in environmental reservoirs.↵↵The microaerophilic nature of C. concisus may influence its ecological interactions within the host, as this oxygen requirement can affect its competition with other microbial species in the gastrointestinal tract. Furthermore, the chain or single cell arrangement may facilitate unique interactions with host tissues or other microbes, impacting its survival and potential roles in the host microbiome. ↵↵Understanding the specific habitat and metabolic needs of C. concisus strain Lasto28.99 may provide insights into its function and significance within the gastrointestinal ecosystem, potentially shedding light on its contributions to host health or dysbiosis." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 NDYO00000000.1 Bac0000048 Capnocytophaga ochracea "Capnocytophaga ochracea is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This organism inhabits diverse environments, indicating its capacity to adapt to various ecological niches. Its microaerophilic nature suggests that it thrives in environments with low oxygen levels, which could influence its interactions with other microbial communities and its role in biogeochemical cycles.↵↵The unique morphology of C. ochracea, along with its cell arrangement, may play a role in its ecological functions, potentially affecting nutrient cycling and microbial dynamics in its habitats. The ability to form chains could facilitate nutrient exchange and communication between cells, enhancing its survival and adaptability in microaerophilic conditions. This trait might also influence its interactions with other microorganisms, including potential symbiotic relationships or competition for resources.↵↵Overall, the adaptability of Capnocytophaga ochracea to varying habitats and its specific oxygen requirements provide insights into the ecological roles of microaerophilic bacteria in diverse environments. Understanding these traits can contribute to broader discussions on microbial ecology and the maintenance of ecosystem health." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles 201 UYIQ00000000.1 Bac0000049 Helicobacter pylori str. 1002 "Helicobacter pylori str. 1002 is a Gram-negative, microaerophilic bacterium characterized by its distinct spirilla shape and arrangement in singles. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat within a host-associated environment, typically residing in the gastric mucosa of mammals. ↵↵The microaerophilic nature of H. pylori str. 1002 suggests that it requires reduced levels of oxygen for growth, which is consistent with the low-oxygen conditions often found in the stomach. The bacterium's spiral form may facilitate its motility through the viscous gastric environment, potentially enhancing its ability to colonize and persist in the highly acidic conditions of the stomach.↵↵Given its adaptation to a host-associated habitat and optimal growth temperature, H. pylori str. 1002 likely plays a significant role in the microbial ecology of the gastric environment, contributing to the complex interactions between the host and its microbiota. This relationship highlights the potential influence of H. pylori on gastric health and disease, as its presence and behavior in the host can impact overall digestive functions and host immunity. Further exploration of its ecological role may provide insights into the dynamics of stomach microbiomes and their implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RPFS00000000.1 Bac0000050 Helicobacter pylori str. 1039 "Helicobacter pylori strain 1039 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism optimally thrives at 37.0°C, indicating its adaptation to the physiological temperature found within its host. H. pylori is predominantly associated with the gastric mucosa of humans and other hosts, reflecting its evolutionary niche as a host-associated microbe.↵↵The microaerophilic nature of H. pylori suggests that it thrives in environments with reduced oxygen levels, which is consistent with the low-oxygen conditions typically found in the stomach. This adaptation not only facilitates its survival but may also play a role in its interactions with the host's immune system. The unique morphology of H. pylori, with its helical shape, likely contributes to its motility within the viscous gastric mucus, aiding in colonization and persistence in the harsh gastric environment.↵↵The ecological implications of H. pylori strain 1039's traits underscore the importance of host-associated microbes in influencing gastrointestinal health. The specific adaptations of H. pylori to its microaerophilic habitat and optimal temperature highlight its role in the complex microbial community of the stomach, where it may impact both host physiology and the overall microbial ecology. Understanding these traits could provide insights into the potential roles of H. pylori in health and disease, emphasizing the delicate balance between host and microbial interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJR00000000.1 Bac0000051 Helicobacter pylori str. 173/00 "Helicobacter pylori strain 173/00 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at 37.0°C, which aligns with the average human body temperature, suggesting an adaptation to a host-associated habitat. H. pylori is predominantly found in the gastric mucosa of humans, where it establishes a niche that may influence gastric health and disease.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with its colonization of the stomach's acidic environment, where oxygen availability is limited. This trait likely contributes to its survival and persistence in the gastric niche, as well as its ability to evade the host's immune responses.↵↵An intriguing aspect of H. pylori strain 173/00 is its potential role in the complex interplay between the host and its microbiota, particularly in relation to gastric diseases. Understanding the specific interactions of this strain within the digestive ecosystem may provide insights into its ecological significance and its contribution to overall gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CM003128.1 Bac0000052 Helicobacter pylori str. 2036 "Helicobacter pylori str. 2036 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C and exhibits microaerophilic growth, indicating a requirement for reduced oxygen levels for its metabolic processes. H. pylori str. 2036 is typically host-associated, suggesting a close relationship with its host environment, which may influence its growth and survival strategies.↵↵As a member of the Helicobacter genus, it is important to note that H. pylori is well-studied for its role in the gastric microbiome, particularly its association with the human stomach. The microaerophilic nature of this strain reflects its adaptation to the specific oxygen conditions found within the gastric mucosa, where it can colonize and persist in the presence of acidic conditions. ↵↵Moreover, the spiral shape of H. pylori str. 2036 may facilitate its motility through the viscous environment of the gastric mucosa, potentially aiding in its colonization and interaction with host tissues. This trait, combined with its optimal temperature and habitat preferences, highlights the specialized ecological niche that H. pylori occupies. Understanding these characteristics can provide insights into the bacterium's behavior and its interactions within its host environment, as well as its potential implications for gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJB00000000.1 Bac0000053 Helicobacter pylori str. 2061 "Helicobacter pylori strain 2061 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found in the gastric environment of its host. ↵↵As a member of the Helicobacter genus, H. pylori is primarily associated with the gastric mucosa of humans and other animals, where it is known to inhabit the acidic environment of the stomach. The microaerophilic nature of this organism allows it to survive in environments with reduced oxygen levels, which is essential for its colonization and persistence in the host's gastric milieu. ↵↵Given its specific habitat and physiological requirements, H. pylori strain 2061 may play a significant role in shaping the microbial community within the gastric niche. Its ability to adapt to the harsh conditions of the stomach, including the presence of gastric acid, provides insights into microbial survival strategies in extreme environments. This adaptability underscores the importance of H. pylori in understanding host-microbe interactions and the complexities of gastrointestinal microbiota." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJE00000000.1 Bac0000054 Helicobacter pylori str. 22315 "Helicobacter pylori strain 22315 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, commonly found in the human gastric environment. ↵↵As a member of the Helicobacter genus, strain 22315 is adapted to survive in the acidic conditions of the stomach, utilizing its unique morphology and metabolic capabilities. The microaerophilic nature of H. pylori suggests a specialized adaptation to low-oxygen environments, which is essential for its survival in the gastric niche. ↵↵The ecological role of Helicobacter pylori, particularly strain 22315, can be inferred from its habitat and characteristics. This bacterium is not only notable for its interaction with the human host but also for its potential influence on gastric microbiota and host physiology. Understanding the precise adaptations of strain 22315 enhances our comprehension of its ecological dynamics and potential implications for host health in the context of gastric environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGS00000000.1 Bac0000055 Helicobacter pylori str. 22352 "Helicobacter pylori str. 22352 is a Gram-negative bacterium characterized by its spiral shape and occurrence as single cells. This microbe is classified as microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which aligns with its habitat as a host-associated organism. The optimal growth temperature for H. pylori str. 22352 is approximately 37.0°C, a condition that is typically found in the human stomach, suggesting a specialized adaptation to its niche.↵↵The spiral morphology of H. pylori is significant for its motility, allowing the bacterium to navigate through the viscous gastric mucus and colonize the gastric epithelium. This adaptation is crucial for its survival in the acidic environment of the stomach, where it can evade the host's immune responses and establish a persistent infection.↵↵In terms of its ecological role, H. pylori str. 22352 may contribute to the complex microbial community of the gastric microbiome. The interactions between this bacterium and other microbial inhabitants could influence not only gastric health but also broader implications for host metabolism and immune regulation. Understanding the specific traits of H. pylori str. 22352 enhances our comprehension of its ecological dynamics and potential impact within the host environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJY00000000.1 Bac0000056 Helicobacter pylori str. 22362 "Helicobacter pylori strain 22362 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe is microaerophilic, thriving in environments with reduced oxygen levels, and it exhibits an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of the human stomach. As a host-associated organism, H. pylori strain 22362 is predominantly found in the gastric mucosa of its host, where it interacts closely with the epithelial cells.↵↵The microaerophilic nature of H. pylori allows it to adapt to the unique chemical environment of the stomach, where it can evade the acidic conditions by residing in the protective mucus layer. Its spiral morphology may facilitate motility in the viscous gastric environment, enabling it to navigate through the mucus to colonize the stomach lining effectively.↵↵Given its specific habitat and growth requirements, H. pylori strain 22362 exemplifies the intricate relationships that microbes can form with their hosts, particularly in how they adapt morphologically and physiologically to thrive in niche environments such as the gastrointestinal tract. Understanding these traits contributes to our knowledge of microbial ecology and the evolutionary mechanisms that underpin host-microbe interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIO00000000.1 Bac0000057 Helicobacter pylori str. 22368 "Helicobacter pylori strain 22368 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, suggesting its adaptation to the warm environment of the human gastric niche. As a host-associated microbe, Helicobacter pylori strain 22368 is commonly found in the stomach lining of its hosts, where it plays a role in complex interactions with the gastric environment.↵↵The microaerophilic nature of Helicobacter pylori indicates that it requires reduced levels of oxygen for growth, which aligns with its habitat within the human stomach, where oxygen concentration is lower than in the atmosphere. The unique morphological characteristics of this bacterium, combined with its physiological requirements, underscore its specialization for survival in the gastric ecosystem.↵↵Given its adaptation to a highly specific environment, Helicobacter pylori strain 22368 may be influenced by the host's diet and gastric secretions, making it an intriguing subject for studying host-microbe interactions. This strain serves as a model for understanding the complexities of microbial life in acidic environments and highlights the importance of microbial adaptations in maintaining ecological balance within host-associated habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIL00000000.1 Bac0000058 Helicobacter pylori str. 22371 "Helicobacter pylori str. 22371 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated organism, typically found in the gastric environment of mammals. H. pylori str. 22371 exhibits microaerophilic oxygen requirements, indicating that it thrives in environments with reduced oxygen levels, which is consistent with the low-oxygen conditions present in the gastric mucosa.↵↵The adaptation of H. pylori str. 22371 to its microaerophilic lifestyle suggests a specialized metabolic capability that allows it to survive and maintain its physiological functions in the gastric niche. This adaptation may play a crucial role in its interactions with the host's immune system and gastric environment, potentially influencing the microbial community dynamics within the stomach. Understanding the specific traits of H. pylori str. 22371 can provide valuable insights into its ecological role and the broader implications of its presence in the host's microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIJ00000000.1 Bac0000059 Helicobacter pylori str. 22386 "Helicobacter pylori strain 22386 is a Gram-negative bacterium characterized by its spirilla shape and singular cell arrangement. This microbe thrives optimally at 37.0°C and is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth. H. pylori strain 22386 is host-associated, suggesting a specialized adaptation to living within the gastric environment of a host organism.↵↵The microaerophilic nature of H. pylori allows it to inhabit the human stomach, where oxygen levels are lower than in the external environment, thereby influencing its survival and metabolic activities. This adaptation may contribute to its persistence and colonization success in the harsh gastric milieu, which is characterized by low pH levels and the presence of digestive acids.↵↵The strain’s specific optimal temperature aligns with the physiological conditions found in the human body, reinforcing its role as a resident microbe within gastric tissues. Understanding the traits of H. pylori strain 22386 enhances our knowledge of its ecological niche and potential interactions with the host microbiome. Given its unique adaptations, further research into this strain may provide insights into the complex dynamics of host-microbe interactions and the role of H. pylori in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIF00000000.1 Bac0000060 Helicobacter pylori str. 22402 "Helicobacter pylori strain 22402 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, indicating its adaptation to host-associated environments, as it is typically found in the gastric mucosa of mammals. H. pylori strain 22402 is microaerophilic, requiring reduced levels of oxygen for growth, which aligns with its natural habitat within the highly acidic environment of the stomach.↵↵The microbe's Gram-negative cell wall structure is significant for its survival in the host, as it provides a barrier against the immune response and certain antibiotics. The spiral morphology of H. pylori is thought to facilitate its motility through the viscous gastric mucus, allowing it to colonize the gastric epithelium effectively. ↵↵Given its specific temperature preference and microaerophilic nature, H. pylori strain 22402 exemplifies the remarkable adaptations of bacteria to survive in specialized niches within the host. These traits not only enable the bacterium to thrive in the gastric environment but also underscore the complex interactions between host physiology and microbial life, highlighting the potential for diverse microbial communities in the human gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIB00000000.1 Bac0000061 Helicobacter pylori str. 228/99 "Helicobacter pylori strain 228/99 is a Gram-negative bacterium characterized by its spiral shape and typically exists as single cells. This microbe is adapted to a microaerophilic environment, thriving optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated organism. ↵↵The unique morphology of H. pylori, combined with its specific growth requirements, suggests a specialized adaptation to the gastric environment of its host. The microaerophilic nature indicates that it requires reduced oxygen levels for optimal growth, which is consistent with the low-oxygen conditions often found in the stomach. This adaptation may play a crucial role in its survival and colonization within the gastric mucosa, where it may influence the local microbial ecosystem.↵↵H. pylori strain 228/99's ability to thrive in such a niche environment underscores its potential role in shaping the gastric microbiome and suggests a complex interplay with host physiology. Understanding these traits may provide insights into the ecological dynamics of this microbe within its host and its potential implications for gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JSXY00000000.1 Bac0000062 Helicobacter pylori str. 26100 "Helicobacter pylori str. 26100 is a Gram-negative bacterium characterized by its spirilla shape and arrangement in singles. This microbe is microaerophilic, requiring a reduced oxygen environment for optimal growth, which aligns with its adaptation to the gastric niche of its host. The optimal growth temperature for H. pylori str. 26100 is approximately 37.0°C, which is consistent with the typical body temperature of mammals, particularly humans, where this organism is primarily found.↵↵H. pylori str. 26100 is host-associated, suggesting a specialized ecological niche within the gastrointestinal tract, where it may play a role in various gastric processes. The microaerophilic nature of this organism indicates that it thrives in environments with lower levels of oxygen than are found in the atmosphere, facilitating its survival in the highly acidic conditions of the stomach. ↵↵The specific adaptation to a host-associated habitat and its microaerophilic requirement may reflect evolutionary pressures that have shaped its metabolic pathways and interactions within the gastric environment. Understanding these traits can provide insights into the ecological dynamics of H. pylori, as well as its potential implications for gastric health and disease in its host organisms." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHV00000000.1 Bac0000063 Helicobacter pylori str. 3004 "Helicobacter pylori strain 3004 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and singular cell arrangement. This organism thrives optimally at 37.0°C, which aligns with the average human body temperature, suggesting its adaptation to a host-associated habitat. Helicobacter pylori is known for its colonization of the gastric mucosa, where it plays a significant role in gastrointestinal microbiota.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced oxygen levels for growth, which is consistent with its habitat within the gastric environment, where oxygen is limited. The Gram-negative cell wall structure of this bacterium, characterized by a thin peptidoglycan layer surrounded by an outer membrane, may contribute to its resilience in the acidic conditions of the stomach.↵↵Given its specific adaptations, including optimal growth temperature and oxygen requirements, H. pylori strain 3004 exemplifies the intricate relationship between microbial physiology and its ecological niche within the host. Understanding these traits is essential for further studies on its role in the human microbiome and potential implications for digestive health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIX00000000.1 Bac0000064 Helicobacter pylori str. 3046 "Helicobacter pylori strain 3046 is a Gram-negative bacterium characterized by its spirilla shape and arrangement as single cells. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its adaptation to a host-associated habitat, primarily residing in the gastric mucosa of mammals. As a microaerophilic organism, H. pylori strain 3046 requires a reduced level of oxygen for growth, reflecting its specialized niche within the acidic environment of the stomach. ↵↵The morphology and growth conditions of H. pylori strain 3046 suggest an evolutionary adaptation to its environment, allowing it to colonize the gastric epithelium effectively. Its microaerophilic nature indicates a reliance on specific oxygen concentrations that are typically found in the stomach, further emphasizing its specialized role within the host. Understanding the traits of H. pylori strain 3046 contributes to a broader comprehension of the survival strategies employed by microbes in complex host-associated ecosystems. This strain exemplifies how specific adaptations can influence microbial behavior and interactions within the gastrointestinal tract, potentially affecting host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGP00000000.1 Bac0000065 Helicobacter pylori str. 3076 "Helicobacter pylori strain 3076 is a Gram-negative bacterium characterized by its distinctive spirilla shape and tendency to exist as singles rather than in clusters. This microbe thrives optimally at a temperature of 37.0°C, which corresponds to the internal temperature of the human body, indicating its adaptation to a host-associated habitat. H. pylori strain 3076 is microaerophilic, requiring reduced oxygen levels for optimal growth, which is consistent with its colonization of the gastric mucosa, where oxygen availability is lower than in the atmosphere.↵↵The specific adaptations of H. pylori strain 3076 to its microenvironment suggest a highly specialized evolutionary relationship with its host. This strain's capacity to survive and proliferate in the acidic environment of the stomach underscores its potential role in influencing gastric physiology. The microaerophilic nature of this bacterium may also reflect an ecological strategy that minimizes competition with other microbial inhabitants of the gastrointestinal tract, allowing it to occupy a unique niche. Understanding these traits provides insight into the evolutionary pressures that shape the behavior and survival of H. pylori and highlights the intricate dynamics of host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGM00000000.1 Bac0000066 Helicobacter pylori str. 3118 "Helicobacter pylori str. 3118 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, aligning with its habitat as a host-associated microbe, likely residing in the gastric mucosa of its host. ↵↵The microaerophilic nature of H. pylori str. 3118 indicates that it requires reduced levels of oxygen for growth, which is typical for many bacteria inhabiting the gastrointestinal tract where oxygen concentrations are lower than atmospheric levels. This adaptation may play a significant role in its survival and metabolic processes within the acidic environment of the stomach.↵↵Understanding the unique traits of Helicobacter pylori str. 3118 contributes to a broader comprehension of its ecological niche and potential interactions within the host. The bacterium's ability to persist in a challenging environment like the stomach underscores its evolutionary adaptations, which may include mechanisms for withstanding acidity and evading host immune responses. Such insights are crucial for exploring its role in gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHM00000000.1 Bac0000067 Helicobacter pylori str. 45 "Helicobacter pylori strain 45 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at 37.0 °C, which aligns with the typical human body temperature, indicating its adaptation to a host-associated habitat. H. pylori strain 45 exhibits microaerophilic oxygen requirements, suggesting that it prefers environments with lower oxygen levels than those found in the atmosphere, which is consistent with its colonization of the gastric mucosa in the stomach.↵↵The unique morphological and physiological traits of H. pylori strain 45 facilitate its survival and persistence in the harsh acidic environment of the stomach. Its curved shape allows for motility through the viscous gastric mucus, while its microaerophilic nature enables it to thrive in oxygen-restricted niches. By residing in the gastric environment, this strain likely plays a role in the complex microbial ecosystem of the human gut, where it may influence local pH levels and interact with other resident microorganisms. Understanding the specific adaptations of H. pylori strain 45 can provide insights into its ecological role and its potential impacts on gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LIXG00000000.1 Bac0000068 Helicobacter pylori str. isolated from patient "Helicobacter pylori, a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement, is typically isolated from human hosts. This microbe thrives under microaerophilic conditions, requiring reduced oxygen levels for optimal growth, and exhibits an optimal temperature of 37.0°C, which corresponds with the human body temperature. ↵↵H. pylori is primarily associated with the gastric mucosa, suggesting its adaptation to a host-associated habitat where it may play a role in various gastrointestinal processes. The presence of this microbe in patients has been extensively studied, particularly concerning its association with gastric disorders. ↵↵Interestingly, the unique morphology and metabolic requirements of H. pylori may facilitate its survival in the harsh acidic environment of the stomach, where it can persist and interact with the host's immune response. This adaptation highlights the bacterium's potential role in shaping the gastric microbiome, influencing not only its own survival but also the overall health of the host. Understanding these traits can provide insight into the complexities of host-microbe interactions and the ecological dynamics within the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP022410.1 Bac0000069 Helicobacter pylori str. ZH01 "Helicobacter pylori str. ZH01 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain is optimally adapted to growth at 37.0°C, a temperature that aligns with its natural habitat in the gastric environment of its host. As a member of the Helicobacter genus, H. pylori str. ZH01 is typically found associated with the mucosal lining of the stomach, where it plays a complex role in the gastrointestinal microbiome.↵↵The microaerophilic nature of H. pylori str. ZH01 indicates that it thrives in environments with reduced oxygen levels, which is consistent with the low-oxygen conditions found in the gastric niche. This adaptation is essential for its survival and metabolic activities within the host. The strain's unique morphology and growth conditions suggest an evolutionary specialization that may provide insights into its interactions with host gastric physiology.↵↵Understanding the specific traits of Helicobacter pylori str. ZH01 contributes to the broader knowledge of microbial diversity in host-associated environments and underscores the intricate relationship between bacteria and their hosts. This strain exemplifies how microbial adaptations to specific habitats can influence both ecological dynamics and the overall health of the host organism." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJDZ00000000.1 Bac0000070 Helicobacter pylori str. ZH02 "Helicobacter pylori strain ZH02 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This strain exhibits optimal growth at a temperature of 37.0 °C, which aligns with its habitat as a host-associated organism. The microaerophilic nature of H. pylori indicates that it thrives in environments with reduced oxygen levels, which is characteristic of the gastric mucosa where it is often found. ↵↵This bacterium plays a significant role in the human gastrointestinal tract, particularly in the stomach, where it can influence the host's microbiome and potentially contribute to various gastric conditions. The single-cell arrangement of H. pylori suggests a lifestyle that may be adapted for niche colonization within the gastric environment, allowing for efficient interaction with host tissues and evasion of immune responses.↵↵The specific adaptation to a microaerophilic habitat underscores the evolutionary strategies employed by H. pylori to thrive in the acidic gastric milieu, where oxygen levels are limited. Understanding these traits can provide insights into the ecological dynamics of H. pylori within the human digestive system and its potential impact on gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEA00000000.1 Bac0000071 Helicobacter pylori str. ZH113 "Helicobacter pylori strain ZH113 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe exhibits optimal growth at a temperature of 37.0°C, suggesting a physiological adaptation to the human body, where it is typically found in a host-associated habitat. As a microaerophilic organism, H. pylori str. ZH113 requires reduced oxygen levels for growth, which aligns with its ecological niche within the gastric environment, where oxygen concentration is lower than in the atmosphere. ↵↵The unique morphology and specific environmental requirements of H. pylori strain ZH113 may influence its interaction with the host's immune system and its ability to colonize the gastric mucosa. Understanding these traits is crucial for elucidating the bacterium's role in gastric health and disease. The microaerophilic nature of this strain may also inform strategies for targeted treatments that consider the oxygen levels within the gastric niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHZ00000000.1 Bac0000072 Helicobacter pylori str. ZH116 "Helicobacter pylori strain ZH116 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, suggesting an adaptation to the warm environment of its host. H. pylori is typically associated with the gastric mucosa of humans and other mammals, indicating that ZH116 is likely to inhabit similar host-associated environments. ↵↵As a microaerophilic organism, H. pylori strain ZH116 requires reduced levels of oxygen for growth, which is consistent with its ecological niche in the stomach, where oxygen concentration is lower than in the atmosphere. This adaptation may play a crucial role in its survival and persistence within the acidic gastric environment. ↵↵The specific metabolic pathways and interactions of H. pylori strain ZH116 within its host remain to be fully characterized, but its unique morphological and physiological traits may influence its ecological dynamics in the host's microbiome. The ability to thrive in such a specific microenvironment underscores the significance of H. pylori in the context of host-microbe interactions, potentially impacting gastric health and disease outcomes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIB00000000.1 Bac0000073 Helicobacter pylori str. ZH12 "*Helicobacter pylori* strain ZH12 is a Gram-negative, microaerophilic bacterium characterized by its unique spirilla morphology and single-cell arrangement. This organism thrives optimally at 37.0°C, a temperature that aligns with the typical conditions found in the human gastric environment, indicating its adaptation to host-associated habitats. ↵↵*H. pylori* is renowned for its colonization of the gastric mucosa, where it plays a significant role in various gastric pathologies, although the specific pathogenicity of strain ZH12 is not detailed in the provided traits. The microaerophilic nature of this bacterium suggests that it requires lower levels of oxygen for growth, which further supports its survival in the oxygen-restricted milieu of the stomach. ↵↵Understanding strain ZH12 within the context of its ecological niche highlights the intricate relationship between host and microbe, as well as the potential for strain-specific adaptations to the gastric environment. This strain serves as a valuable model for studying the physiological and metabolic processes that enable *H. pylori* to persist in a challenging habitat while also contributing to our understanding of host-microbe interactions in the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEL00000000.1 Bac0000074 Helicobacter pylori str. ZH120 "Helicobacter pylori str. ZH120 is a Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This microbe thrives in a host-associated habitat, typically residing in the gastric mucosa of mammals. It exhibits a microaerophilic oxygen requirement, indicating that it prefers environments with lower oxygen levels than are found in the atmosphere, which is consistent with its adaptation to the gastric environment.↵↵The optimal temperature for the growth of H. pylori str. ZH120 is 37.0°C, aligning with the average body temperature of warm-blooded hosts, further underscoring its specialization for life within a host organism. The unique morphology and physiological traits of this strain facilitate its colonization in the harsh acidic conditions of the stomach, where it can evade the immune response and establish a persistent presence.↵↵Research into H. pylori str. ZH120 can provide insights into its role in host-microbe interactions, particularly how its microaerophilic nature and spiral morphology contribute to its survival and potential influence on gastric health. Understanding these traits may shed light on the broader ecological implications of H. pylori in the gastrointestinal microbiota and its adaptations to specific niches within host organisms." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIF00000000.1 Bac0000075 Helicobacter pylori str. ZH125 "Helicobacter pylori strain ZH125 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, indicating a preference for reduced oxygen levels, which aligns with its typical habitat associated with the human stomach. The optimal growth temperature for H. pylori ZH125 is approximately 37.0°C, a condition that corresponds to the normal human body temperature, further emphasizing its adaptation to a host-associated lifestyle.↵↵H. pylori strains are known for their role in colonizing the gastric mucosa, and strain ZH125 is no exception, potentially contributing to the complex dynamics of the gastric microbiome. Its microaerophilic nature suggests a specialized metabolic adaptation that enables it to survive and proliferate in the acidic and low-oxygen conditions of the stomach. This adaptation may provide insights into its ecological niche, as the bacteria may utilize specific metabolic pathways that differ from those of other gastric microorganisms. ↵↵Overall, the characteristics of H. pylori ZH125 underline its specialized adaptations to a host-associated environment, illustrating the intricate relationships between microbial life and human physiology in the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIK00000000.1 Bac0000076 Helicobacter pylori str. ZH129 "Helicobacter pylori strain ZH129 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, typically reflecting the physiological conditions of its host environment. As a member of the Helicobacter genus, H. pylori is primarily associated with the gastric mucosa of various hosts, indicating a specialized niche that aligns with its habitat preferences.↵↵The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its colonization of the gastric environment where oxygen concentrations are lower than atmospheric levels. This adaptation allows H. pylori to thrive in the highly acidic conditions of the stomach, where it plays a complex role within the host’s microbiome. ↵↵The specific habitat and growth requirements of H. pylori strain ZH129 may provide insights into its metabolic pathways and interactions within the gastrointestinal microbiota. Understanding these traits is crucial for elucidating the ecological dynamics of H. pylori in its host and could inform future research on its role in health and disease. The capacity of H. pylori to adapt to microaerophilic conditions in a host-associated environment highlights the intricate relationships that exist within microbial communities and their hosts, emphasizing the need for further investigation into the ecological implications of such specialized adaptations." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIO00000000.1 Bac0000077 Helicobacter pylori str. ZH130 "Helicobacter pylori strain ZH130 is a Gram-negative bacterium characterized by its spirilla shape and a tendency to exist as single cells. This microbe thrives optimally at 37.0°C, which aligns with the typical body temperature of its host organisms. H. pylori str. ZH130 is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth, which is consistent with its adaptation to the gastric environment of the host.↵↵The habitat of H. pylori str. ZH130 is predominantly host-associated, suggesting a close relationship with the gastric mucosa where it may play a role in various physiological processes. This association underlines the bacterium's potential impact on the host's microbiome and gastrointestinal health. Given the specific conditions under which H. pylori thrives, its microaerophilic nature may impart a competitive advantage in colonizing the acidic gastric environment, where oxygen levels are limited.↵↵An intriguing ecological insight is that the microaerophilic requirement of H. pylori str. ZH130 may influence its interactions within the diverse microbial community of the stomach, potentially shaping the overall microbial landscape and influencing host responses to other microbial inhabitants. This adaptability to a specialized niche exemplifies the intricate relationships between host-associated microbes and their environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIP00000000.1 Bac0000078 Helicobacter pylori str. ZH134 "Helicobacter pylori strain ZH134 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives at an optimal temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, typically found in the gastric mucosa of mammals. The microaerophilic nature of H. pylori indicates that it requires reduced oxygen levels for optimal growth, which is consistent with its ecological niche within the stomach, where oxygen availability is limited.↵↵The unique spiral morphology of H. pylori contributes to its motility within the viscous gastric environment, allowing it to navigate through mucus layers and adhere to the epithelial cells. This adaptation is crucial for its survival and potential interactions with the host's immune system. Understanding the specific growth conditions and morphological traits of H. pylori strain ZH134 can provide insights into its role in the gastric ecosystem, as well as its interactions with host physiology. Further research may elucidate the microbial dynamics and host responses associated with this strain, potentially revealing its significance in health and disease contexts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIT00000000.1 Bac0000079 Helicobacter pylori str. ZH138 "Helicobacter pylori strain ZH138 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives in microaerophilic environments, indicating that it requires reduced oxygen levels for optimal growth. The optimal temperature for strain ZH138 is 37.0°C, suggesting a preference for conditions similar to those found in the human gastrointestinal tract, where it is typically host-associated.↵↵As a member of the Helicobacter genus, H. pylori is well-known for its adaptation to the acidic environment of the stomach. The microaerophilic nature of strain ZH138 may offer insights into its metabolic pathways and survival strategies in low-oxygen environments. Understanding the specific adaptations of this strain, such as its enzymatic capabilities and potential interactions with the host immune system, can provide valuable information about its role within the gastrointestinal ecosystem.↵↵This strain exemplifies the complexity of microbial life in host-associated environments, demonstrating how specific physiological traits can influence the ecological niches that bacteria occupy. Further research may elucidate the unique interactions of H. pylori strain ZH138 with its host and its potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIX00000000.1 Bac0000080 Helicobacter pylori str. ZH139 "Helicobacter pylori str. ZH139 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. H. pylori is predominantly found in the gastric mucosa of humans and is known for its ability to survive in the acidic environment of the stomach, which is critical for its ecological niche. ↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is indicative of its specialized adaptation to the gastric environment where oxygen levels are lower than in the atmosphere. The unique morphology of H. pylori, with its spiral shape, facilitates motility through the viscous gastric mucus, enhancing its ability to colonize and establish itself within the gastric epithelium.↵↵Understanding the specific traits of Helicobacter pylori str. ZH139 contributes to the broader knowledge of microbial life in human-associated environments, highlighting the intricate adaptations that enable survival in such a challenging habitat. Further exploration of this strain may provide insights into the complex interactions between host and microbe, as well as the potential for influencing gastric health and disease outcomes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIY00000000.1 Bac0000081 Helicobacter pylori str. ZH14 "Helicobacter pylori strain ZH14 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and its occurrence as single cells. This strain thrives optimally at 37.0°C, which aligns with its adaptation to the warm environment of the human gastric mucosa, its primary habitat. The microaerophilic nature of H. pylori indicates that it requires lower levels of oxygen for growth than are present in the atmosphere, reflecting its specialized ecological niche within the host.↵↵H. pylori is known for its association with the gastric environment, where it can persist despite the acidic conditions of the stomach. The bacterium's unique morphology, combined with its optimal growth temperature, suggests a highly adapted lifestyle that enables it to colonize the gastric epithelium effectively. This adaptation may involve various mechanisms that allow it to evade the host’s immune response and survive in a challenging habitat.↵↵Understanding the characteristics of H. pylori strain ZH14 contributes to the broader knowledge of its physiological adaptations, which may provide insights into its role in host-associated environments. Further research into the ecological interactions and potential effects of this strain within the host could illuminate aspects of gastric health and disease that are influenced by this microbe's presence." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEN00000000.1 Bac0000082 Helicobacter pylori str. ZH22 "Helicobacter pylori strain ZH22 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which coincides with the typical internal body temperature of its human host. H. pylori ZH22 is microaerophilic, indicating that it requires reduced levels of oxygen for growth, a trait that aligns with its adaptation to the gastric environment where oxygen levels are lower than in atmospheric conditions.↵↵As a member of the genus Helicobacter, strain ZH22 resides in a host-associated habitat, primarily within the gastric mucosa of humans. This association highlights its potential role in the complex interactions within the host's microbiome, though the specific implications of these interactions remain to be fully elucidated. The adaptation to a microaerophilic lifestyle suggests that H. pylori ZH22 has evolved mechanisms to cope with the unique biochemical and physical conditions present in the stomach, possibly influencing gastric pH and the overall microbial community.↵↵The unique ecological insight regarding H. pylori ZH22 involves its potential contribution to the host's immune response and gastric health, as its presence may influence the dynamics of other microbial populations in the stomach, possibly affecting susceptibility to various gastrointestinal conditions. Further research is warranted to explore these interactions and their implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEV00000000.1 Bac0000083 Helicobacter pylori str. ZH3 "Helicobacter pylori strain ZH3 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated environments. H. pylori ZH3 is microaerophilic, indicating that it requires reduced levels of oxygen for survival, a trait that is crucial for its colonization in the gastric mucosa of its hosts.↵↵The unique morphological and physiological traits of H. pylori ZH3 suggest its specialization in gastric habitats, where it may play a role in the complex microbiota of the gastrointestinal tract. Its spirilla shape may facilitate motility in the viscous gastric environment, allowing it to navigate through mucus layers and adhere to the gastric epithelium. The microaerophilic requirement highlights its adaptation to the low-oxygen conditions often present in the stomach, further underscoring its niche specialization.↵↵Understanding the traits of H. pylori ZH3 not only contributes to the knowledge of its biology but also provides insights into the intricate relationships this microbe may have with its host and the potential implications for gastrointestinal health. The strain exemplifies the capacity of certain bacteria to thrive in specific microenvironments, showcasing the complexity of host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEB00000000.1 Bac0000084 Helicobacter pylori str. ZH34 "Helicobacter pylori str. ZH34 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which is indicative of its adaptation to the warm environment of its host. H. pylori str. ZH34 is microaerophilic, meaning it requires reduced levels of oxygen for growth, aligning with its habitat as a host-associated organism.↵↵The microbe's spiral morphology may facilitate its motility through the viscous mucus layer of the gastric epithelium, potentially influencing its colonization dynamics within the host. The specific ecological niche occupied by H. pylori str. ZH34 suggests a close relationship with the gastric environment, which could provide insights into its interactions with the host's immune system and its role in gastric health. Understanding these traits can contribute to broader discussions on the microbial communities present in the gastrointestinal tract and their implications for host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFH00000000.1 Bac0000085 Helicobacter pylori str. ZH41 "Helicobacter pylori str. ZH41 is a Gram-negative, spiral-shaped bacterium characterized by its microaerophilic oxygen requirement and preference for a host-associated habitat. The cells are typically arranged as singles, which is consistent with the typical morphology observed in the Helicobacter genus. This strain exhibits optimal growth at 37.0°C, aligning with the physiological temperature of the human stomach, where it is commonly found.↵↵H. pylori is well known for its ability to colonize the gastric mucosa, where it employs unique adaptations to thrive in the acidic environment. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for optimal metabolic processes, which may be a key factor in its survival in the stomach's microenvironment. ↵↵The strain ZH41 contributes to our understanding of the diversity within the Helicobacter genus, particularly regarding its morphological characteristics and physiological requirements. Insights into the specific adaptations of H. pylori strains like ZH41 may illuminate the mechanisms by which this bacterium maintains its niche within the host, potentially influencing its interactions with the host immune system and its overall ecological role in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFO00000000.1 Bac0000086 Helicobacter pylori str. ZH54 "Helicobacter pylori strain ZH54 is a Gram-negative microbe characterized by its spirilla shape and single-cell arrangement. This bacterium thrives in microaerophilic conditions, requiring reduced oxygen levels to sustain its metabolic processes. Optimal growth of H. pylori str. ZH54 occurs at 37.0°C, aligning with the average human body temperature, which suggests a specialized adaptation to its host-associated habitat.↵↵As a member of the Helicobacter genus, strain ZH54 is typically found in the gastric mucosa of humans and other mammals, indicating its association with the gastrointestinal tract. The adaptation to a microaerophilic environment is particularly noteworthy, as it allows H. pylori to colonize the acidic niche of the stomach, where oxygen levels are limited due to the presence of gastric acid.↵↵The unique morphological features and environmental requirements of H. pylori str. ZH54 highlight its evolutionary adaptations to survive and proliferate within its specific host-associated habitat. Understanding these traits may provide insights into the complex interactions H. pylori has with its host, potentially influencing gastric health and disease outcomes. This strain exemplifies the intricate relationship between microbial physiology and environmental conditions, underscoring the importance of host-specific adaptations in microbial ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGA00000000.1 Bac0000087 Helicobacter pylori str. ZH61 "**Helicobacter pylori str. ZH61** is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism has an optimal growth temperature of 37.0 °C, which aligns with the human body temperature, suggesting its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, strain ZH61 is likely to occupy the gastric niche, where it may play a role in the complex microbiota of the gastrointestinal tract. The microaerophilic nature of this strain indicates its requirement for reduced oxygen levels, typically found in the stomach environment, which may contribute to its survival and proliferation within this specific habitat.↵↵Given its characteristics, strain ZH61 may exhibit unique interactions with its host and other microbial inhabitants of the gut, potentially influencing gastric health and microbiome dynamics. Further research into the specific roles and interactions of Helicobacter pylori str. ZH61 within the host could yield insights into its ecological significance and potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGH00000000.1 Bac0000088 Helicobacter pylori str. ZH62 "Helicobacter pylori strain ZH62 is a Gram-negative, spirilla-shaped bacterium that typically exists as single cells. This microbe is adapted to a host-associated habitat and exhibits microaerophilic growth characteristics, thriving in environments with reduced oxygen levels. Optimal growth occurs at 37.0°C, which aligns with the average human body temperature, suggesting a close association with gastric environments, where it may colonize the gastric mucosa.↵↵H. pylori is known for its unique ability to survive within the acidic conditions of the stomach, facilitated by various adaptations, including its spiral shape, which may enhance motility through the viscous gastric mucus. This motility is further supported by its flagella, allowing it to navigate the gastric environment, potentially influencing its ecological niche within the host. The microaerophilic requirement indicates that while it thrives in low-oxygen conditions, it is not entirely anaerobic, which may play a role in its metabolic processes and interactions with host tissues.↵↵In summary, Helicobacter pylori strain ZH62 exemplifies the specialized adaptations of microbes that thrive in host-associated environments, highlighting the intricate relationships between microbial life and host physiology. Understanding these traits can provide insights into how such bacteria might influence gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGI00000000.1 Bac0000089 Helicobacter pylori str. ZH65 "Helicobacter pylori str. ZH65 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, requiring reduced oxygen levels for optimal growth, which aligns with its natural habitat associated with the host. The optimal growth temperature for H. pylori str. ZH65 is 37.0°C, reflecting its adaptation to the human gastric environment.↵↵As a member of the Helicobacter genus, this strain is typically found in the stomachs of various hosts, where it can establish a niche in the acidic gastric milieu. The microaerophilic nature of H. pylori str. ZH65 suggests that it has evolved mechanisms to survive and proliferate in conditions that are not conducive to many other bacterial species, potentially allowing it to exploit the unique biochemical environment of the gastric lining.↵↵The ability of this strain to thrive at 37.0°C and in low-oxygen conditions may provide insights into its survival strategies in the host, especially in relation to its interactions with the host's immune response and gastric secretions. Understanding these traits can illuminate the adaptability of H. pylori str. ZH65 and its potential role in the complex microbial ecosystem of the human stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGK00000000.1 Bac0000090 Helicobacter pylori str. ZH82 "Helicobacter pylori strain ZH82 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the typical human body temperature, indicating its adaptation to a host-associated habitat. ↵↵H. pylori is well-known for its colonization of the gastric epithelium, where it can survive in the acidic environment of the stomach, a trait that may be linked to its microaerophilic nature, allowing it to thrive in low-oxygen conditions. The strain ZH82, like other H. pylori strains, likely possesses unique genetic adaptations that enable its persistence in the harsh gastrointestinal milieu, contributing to its survival and potential interactions within the host.↵↵The specificity of its habitat and oxygen requirements suggests that H. pylori has evolved specialized metabolic pathways to utilize the limited resources available in the stomach, offering insights into its ecological niche. Understanding these traits can enhance our knowledge of H. pylori's role in human health and disease, particularly regarding its interactions with the gastric environment and its implications for gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGX00000000.1 Bac0000091 Helicobacter pylori str. ZH86 "Helicobacter pylori str. ZH86 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels, which aligns with its adaptation to host-associated habitats. Optimal growth for H. pylori str. ZH86 occurs at 37.0°C, a temperature that corresponds with the typical physiological conditions found within the human gastric environment.↵↵The unique morphology of H. pylori, with its spirilla shape, enhances its motility, allowing it to navigate the viscous gastric mucus layer, thereby facilitating its colonization of the gastric epithelium. This adaptation may be crucial for its survival and persistence within the host. Given its specific habitat and growth requirements, H. pylori str. ZH86 likely plays a role in the complex interactions within the gastric microbiome, which can influence host health and disease states. Understanding the traits of this strain can provide insights into its ecological niche and its potential implications in human health, particularly in relation to gastric conditions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHB00000000.1 Bac0000092 Helicobacter pylori "Helicobacter pylori is a microbe that thrives in a hostile environment within the human stomach. It belongs to the temperature preference category of Thermophilic, with an optimal growth temperature range of 37°C to 40°C. Its metabolism is that of a Chemoheterotroph, meaning it derives its energy by breaking down organic compounds and using them as a source of carbon and energy. H. pylori produces energy through anaerobic respiration, a process that involves the breakdown of nutrients without the presence of oxygen. The microbe's shape is characterized by a curved or spiral shape, often referred to as a ""helix,"" which allows it to move and colonize the surfaces of the stomach lining. Gram staining reveals that H. pylori is a Gram-negative bacteria, which is typical of many pathogenic bacteria. In terms of body sites, H. pylori is found in the stomach and small intestine of approximately 50-60% of the global population. H. pylori is an Obligate Anaerobe, meaning it is unable to survive in the presence of oxygen and requires a low-oxygen or anaerobic environment to thrive. This unique adaptation allows it to colonize the stomach, where oxygen levels are low due to the presence of thick mucus and acidic conditions. Helicobacter pylori is a significant human pathogen, causing chronic gastritis, peptic ulcers, and gastric cancer. Its ability to colonize the stomach lining and evade the host's immune system allows it to persist for decades, making treatment challenging. Despite its reputation as a disease-causing agent, H. pylori has also been linked to the development of stomach cancer, with some studies suggesting that it may play a role in reducing the risk of stomach cancer in some individuals. In addition to its notorious reputation, H. pylori has also been studied for its potential role in the evolution of the human gut microbiome. The microbe's unique adaptations to the human stomach have allowed it to thrive in an environment that is hostile to many other microorganisms, making it a fascinating subject of study for microbiologists and evolutionary biologists alike." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MJGH00000000.1 Bac0000093 Helicobacter pylori str. 1198/04 "Helicobacter pylori strain 1198/04 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. H. pylori is primarily known for colonizing the gastric epithelium, where it is believed to play a role in various gastrointestinal disorders.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with its ecological niche within the acidic environment of the stomach. This adaptation not only enables the bacterium to survive but also allows it to exploit the unique conditions present in the gastric milieu, where it can evade the host's immune responses and establish colonization.↵↵Given these traits, H. pylori strain 1198/04 exemplifies the specialized adaptations of bacteria to their host environments, highlighting the intricate relationships between microbial life and host physiology. Such adaptations may influence microbial diversity and stability within the gastrointestinal tract, potentially affecting overall host health and disease states." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JSXT00000000.1 Bac0000094 Helicobacter pylori str. 1786/05 "Helicobacter pylori str. 1786/05 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and presence as single cells. This strain has an optimal growth temperature of 37.0°C, aligning with the typical physiological conditions found within the gastric environment of its host. ↵↵H. pylori is predominantly host-associated, commonly residing in the human stomach, where it is adapted to thrive in low-oxygen environments. The microaerophilic nature of this bacterium suggests a specialized metabolic capability that allows it to utilize oxygen at reduced concentrations, which is critical for its survival and colonization in the gastric mucosa.↵↵The unique morphological and physiological traits of H. pylori str. 1786/05 may contribute to its ability to establish a niche within the host's stomach, where it interacts with the gastric epithelium. Understanding these traits is crucial for elucidating the ecological roles of H. pylori in the human microbiome and its potential implications for gastrointestinal health. The microbe's adaptation to microaerophilic conditions highlights the intricate relationship between this bacterium and its host environment, suggesting a finely tuned balance that may influence both microbial community dynamics and host pathophysiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CM003130.1 Bac0000095 Helicobacter pylori str. 1846/05 "Helicobacter pylori strain 1846/05 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives at an optimal temperature of 37.0°C, which aligns with the physiological conditions of a mammalian host, suggesting its adaptation to a host-associated habitat. ↵↵H. pylori is known for its ability to colonize the gastric mucosa, where it can influence local microbial communities and interact with host immune responses. The microaerophilic nature of this strain indicates a preference for environments with reduced oxygen levels, which is consistent with its niche in the stomach, where oxygen availability is limited. This adaptation may play a crucial role in its survival and persistence in such a hostile environment, allowing it to evade immune detection.↵↵Understanding the specific traits of H. pylori strain 1846/05 can provide insights into its ecological interactions within the gastric ecosystem. The unique combination of its morphology, oxygen requirements, and optimal growth temperature suggests a finely tuned adaptation to the gastric niche, highlighting the complexity of microbial life and its capacity to thrive in specialized habitats. Further research into this strain may reveal additional insights into its role within the gastric microbiome and its interactions with host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CM003129.1 Bac0000096 Helicobacter pylori str. 2021 "Helicobacter pylori str. 2021 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, notably within the human gastric environment. The microaerophilic nature of H. pylori str. 2021 indicates its requirement for reduced oxygen concentrations, which is typical for organisms residing in the stomach, where oxygen levels are significantly lower than in the atmosphere.↵↵H. pylori is well-known for its role in the gastric microbiome, often colonizing the stomach lining and influencing gastric physiology. The unique morphology of this strain, coupled with its specific oxygen requirements, facilitates its survival and colonization in the acidic gastric niche. The presence of H. pylori str. 2021 within the host-associated environment suggests potential interactions with the host's immune system and microbiome, which may play a role in maintaining gastric homeostasis or contributing to dysbiosis in certain conditions.↵↵In summary, H. pylori str. 2021 exemplifies the intricate adaptations of microorganisms to their specific ecological niches, highlighting the balance between microbial survival strategies and host interactions in the complex environment of the human stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJH00000000.1 Bac0000097 Helicobacter pylori str. 22023 "Helicobacter pylori strain 22023 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at 37.0°C, a temperature consistent with the physiological conditions of its typical host environments. H. pylori is primarily found in association with the gastric mucosa of mammals, highlighting its adaptation to a host-associated habitat. ↵↵As a microaerophilic organism, H. pylori requires reduced levels of oxygen for growth, which aligns with its niche in the gastric environment where oxygen concentrations are lower than in atmospheric conditions. The unique morphology and growth requirements of strain 22023 may play a role in its survival and colonization within the harsh gastric environment, potentially influencing its interactions with host immune responses.↵↵Understanding the physiological traits of H. pylori strain 22023 can provide insights into its ecological niche and its potential roles in gastrointestinal microbiomes. Given its adaptation to a microaerophilic lifestyle and optimal growth temperature, further studies may explore how these traits contribute to its metabolic pathways and interactions with the host, which could be pivotal in understanding the broader implications of H. pylori in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHC00000000.1 Bac0000098 Helicobacter pylori str. 22151 "Helicobacter pylori str. 22151 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives in host-associated habitats, indicating a strong association with animal hosts, particularly in the gastrointestinal tract of humans. The optimal growth temperature for H. pylori str. 22151 is 37.0°C, which aligns with the typical body temperature of its mammalian hosts, suggesting an adaptation to survive and proliferate in this specific environment.↵↵H. pylori is notable for its ability to colonize the gastric epithelium, where it can influence local microenvironments. Its microaerophilic nature implies an adaptation to low oxygen levels, which is often encountered in the gastric niche where it resides. The physiological traits of this strain underscore its potential role in gastrointestinal dynamics and its capability to interact with host immune responses.↵↵Furthermore, the solitary arrangement of H. pylori str. 22151 may provide advantages in nutrient acquisition and colonization strategies, as individual cells can effectively navigate the complex gastric environment without the constraints of larger aggregates. Understanding the specific traits of this strain can contribute to broader insights into the ecological role of H. pylori within its host and the implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGX00000000.1 Bac0000099 Helicobacter pylori str. 22311 "Helicobacter pylori str. 22311 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. ↵↵H. pylori is well-known for colonizing the gastric mucosa, where it can influence the host's gastrointestinal environment. Its microaerophilic nature indicates that it requires reduced oxygen levels for growth, which is consistent with its survival in the gastric niche where oxygen levels are lower than in the atmosphere. The unique morphology of H. pylori, particularly its spirilla shape, is thought to facilitate motility through the viscous gastric mucus, enabling the organism to reach and maintain its position in the gastric epithelium.↵↵Understanding the environmental adaptations of Helicobacter pylori str. 22311 provides insight into its potential interactions with the host's immune system and its role in gastric health and disease. The strain's specific growth conditions and cellular arrangement may influence its ecological dynamics within the host, highlighting the intricate relationships between microbial life and human physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGU00000000.1 Bac0000100 Helicobacter pylori str. 22316 "Helicobacter pylori strain 22316 is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and singular cell arrangement. This organism thrives optimally at a temperature of 37.0°C, indicating its adaptation to the human gastric environment, where it is primarily found as a host-associated microbe. ↵↵H. pylori is known for its ability to colonize the gastric epithelium, and its microaerophilic nature suggests that it requires lower levels of oxygen for optimal growth compared to aerobic organisms. This adaptation is crucial for survival in the acidic conditions of the stomach, where it can play a role in the complex interactions within the gastrointestinal microbiome.↵↵The unique morphology and physiological traits of H. pylori strain 22316 exemplify the intricate relationship between microbial life and host physiology, highlighting the importance of environmental conditions in shaping microbial behavior and ecological niches. Understanding the specific adaptations of H. pylori may provide insights into its role in gastric health and disease, as well as its interactions with the host immune system." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGR00000000.1 Bac0000101 Helicobacter pylori str. 22343 "Helicobacter pylori strain 22343 is a Gram-negative bacterium characterized by its unique spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, typically residing in the gastric mucosa of mammals. H. pylori strain 22343 exhibits microaerophilic characteristics, indicating that it requires lower levels of oxygen than are present in the atmosphere for optimal growth.↵↵The microaerophilic nature of H. pylori suggests that it is well-adapted to the gastric environment, where oxygen levels are significantly reduced compared to ambient conditions. This adaptation plays a crucial role in its survival and potential interaction with the host's immune system. Understanding the specific growth conditions and environmental preferences of H. pylori strain 22343 can provide insights into its ecological niche within the host and its potential influence on gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIT00000000.1 Bac0000102 Helicobacter pylori str. 22360 "Helicobacter pylori str. 22360 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and tendency to exist as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions of its host-associated habitat. H. pylori is known to inhabit the gastric mucosa of humans and other animals, where it can play a role in the complex dynamics of the gastrointestinal microbiome.↵↵The microaerophilic nature of H. pylori indicates that it requires oxygen for growth but at lower levels than are present in the atmosphere, suggesting an adaptation to the oxygen gradients found in the stomach environment. This unique adaptation may contribute to its survival and persistence in the gastric niche, where it can interact with host biological processes.↵↵Given its single-cell arrangement and spiral morphology, H. pylori str. 22360 may utilize its motility for navigating the viscous gastric mucus, a trait that could facilitate its colonization and persistence in the gastric environment. Understanding the ecological role of H. pylori in the host's gastrointestinal tract may provide insights into its interactions with both the host immune system and the diverse microbial community present in this niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIP00000000.1 Bac0000103 Helicobacter pylori str. 26083 "Helicobacter pylori strain 26083 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism predominantly inhabits the gastric mucosa of its host, indicating a strong association with a specific biological niche. Optimal growth conditions for H. pylori strain 26083 are observed at 37.0°C, which aligns with the human body temperature, further emphasizing its adaptation to the host environment.↵↵The microaerophilic nature of H. pylori strain 26083 suggests that it thrives in conditions with reduced oxygen levels, which are typically found in the stomach's antrum. This adaptation enables the bacterium to exploit the unique chemical environment of the gastric lining, where it can evade the host's immune response and establish a persistent presence. The morphology and cellular arrangement of H. pylori strain 26083 are significant for its motility, allowing it to navigate through the viscous gastric mucus.↵↵In summary, H. pylori strain 26083 exemplifies the specialized adaptations of gastric pathogens to their host environments, particularly through its unique morphology, growth temperature, and oxygen requirements. Understanding these traits provides insight into the ecological dynamics of H. pylori within the gastric niche, highlighting its role in the complex interactions between host and microbe." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJV00000000.1 Bac0000104 Helicobacter pylori str. 29CaP "Helicobacter pylori str. 29CaP is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, indicating its adaptation to host-associated environments, likely within the gastric mucosa of mammals. The microaerophilic nature of H. pylori str. 29CaP suggests that it requires low levels of oxygen for growth, which is consistent with its ecological niche in the acidic environment of the stomach, where oxygen levels are typically reduced.↵↵The specific morphology of H. pylori str. 29CaP, combined with its physiological requirements, highlights its specialized adaptations for survival in a highly competitive and hostile habitat. This strain's characteristics may contribute to its ability to persist in the gastric environment, where it can interact with the host's immune response and microbiome. Understanding the traits of H. pylori str. 29CaP can provide insights into its role in gastric health and disease, as well as its ecological dynamics within the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP012905.1 Bac0000105 Helicobacter pylori str. 655/99 "Helicobacter pylori strain 655/99 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, commonly found in the gastric environment of mammals, particularly humans. ↵↵As a member of the Helicobacter genus, strain 655/99 exhibits the typical traits associated with this group, including a unique motility due to its helical structure, which enables it to navigate the viscous gastric mucus layer. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is characteristic of its niche within the stomach, where oxygen concentrations are lower than in the external environment. ↵↵The adaptation of H. pylori to its acidic habitat is facilitated by various mechanisms, including the production of urease, which neutralizes gastric acid and creates a more hospitable microenvironment. The presence of this strain in the gastric microbiota underscores the complex interactions between host physiology and microbial life, providing insights into the evolution of gastric microbes and their potential roles in influencing host health. Understanding the ecological dynamics of H. pylori strain 655/99 may offer further perspectives on microbial adaptation to extreme environments within the human body." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JSXB00000000.1 Bac0000106 Helicobacter pylori str. ATCC 43504 "Helicobacter pylori str. ATCC 43504 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which corresponds with the average human body temperature, underscoring its adaptation to a host-associated habitat. ↵↵H. pylori is well-known for its colonization of the gastric epithelium in humans, where it can survive in the acidic environment of the stomach. The microaerophilic requirement indicates that this organism prefers low oxygen concentrations, which is typical of its ecological niche within the gastric mucus layer. This adaptation allows H. pylori to effectively evade the host's immune response and persist in the hostile gastric environment.↵↵The ability of H. pylori to maintain its structural integrity and metabolic functions under these conditions reflects its evolutionary specialization for survival in a unique ecological niche. This specialization may contribute to its role in various gastric conditions, although the specific pathogenic mechanisms and implications for human health associated with this strain are not detailed here. Understanding the physiological traits of H. pylori str. ATCC 43504 helps provide insights into its ecological dynamics and interactions within the human host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_AP017633.1 Bac0000107 Helicobacter pylori str. UM045 "Helicobacter pylori strain UM045 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and singular cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, typically residing in the gastric mucosa of mammals. ↵↵The microaerophilic nature of H. pylori str. UM045 indicates that it requires lower levels of oxygen for growth than are present in the atmosphere, which is a characteristic feature of many gastric pathogens. The spiral morphology of this strain may facilitate motility within the viscous gastric environment, allowing it to colonize the stomach lining and evade the host's immune responses.↵↵Further investigation into H. pylori str. UM045 could provide insights into its interactions with the gastric microbiome, potentially influencing gastric health and disease states in its host. Its adaptation to a microaerophilic lifestyle suggests a specialized niche within the host's gastrointestinal tract, where it may play a role in the local microbial community dynamics. Understanding these interactions may contribute to broader ecological perspectives on host-microbe relationships in the gastrointestinal environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LELJ00000000.1 Bac0000108 Helicobacter pylori str. UM131 "Helicobacter pylori strain UM131 is a Gram-negative bacterium characterized by its spiral shape and the tendency to exist as single cells. This microbe thrives in a microaerophilic environment, indicating that it requires reduced levels of oxygen for optimal growth, which aligns with its natural habitat within the host. The optimal temperature for H. pylori UM131 is approximately 37.0°C, reflecting its adaptation to the human body, where it can colonize the gastric mucosa.↵↵As a member of the Helicobacter genus, UM131 is associated with the gastric environment, where it may play a role in various host-associated biological processes. The microorganism’s unique spiral morphology may facilitate its motility within the viscous environment of the stomach, potentially influencing its colonization capabilities. ↵↵The presence of H. pylori in the gastric tract underscores its ecological niche as a persistent inhabitant of the human stomach, where it can interact with the host's immune system and contribute to the overall microbiome. Understanding the traits of H. pylori UM131 can provide insights into its physiological adaptations, which may have implications for its role in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFBZ00000000.1 Bac0000109 Helicobacter pylori str. UM152 "Helicobacter pylori strain UM152 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically exists as single cells. This strain is optimally adapted to a temperature of 37.0°C, reflecting its association with host environments, specifically the gastric mucosa of mammals. As a member of the Helicobacter genus, H. pylori is known for its ability to thrive in acidic conditions, which is a common characteristic of its habitat within the stomach.↵↵The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its niche in the gastric environment where oxygen concentrations are lower than in the atmosphere. This adaptation may confer advantages in colonization and survival within the host's stomach, as well as in evading the host's immune responses.↵↵The isolation of strain UM152 contributes to the understanding of H. pylori's genetic and phenotypic diversity. Further studies could elucidate the strain's specific metabolic pathways and interactions with the host, potentially uncovering unique adaptations that facilitate its persistence in the gastric environment. The ecological role of H. pylori in the human microbiome may offer insights into its complex relationship with host health and disease, underscoring the importance of strain-level investigations in microbial ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFIS00000000.1 Bac0000110 Helicobacter pylori str. UM163 "Helicobacter pylori strain UM163 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives at an optimal temperature of 37.0°C, indicating its adaptation to the human body, which serves as its primary habitat. As a host-associated microbe, H. pylori UM163 is intimately linked to the gastric environment, where it may influence various physiological processes.↵↵The microaerophilic nature of this strain suggests that it requires reduced oxygen levels for growth, which aligns with its gastric niche, where oxygen concentrations are lower than in the external environment. This adaptation could be crucial for its survival and function within the host's stomach, allowing it to evade the immune response while colonizing the mucosal lining.↵↵Understanding the specific traits of H. pylori UM163 provides insights into its ecological role in the human gastrointestinal tract. Its ability to thrive in a microaerophilic environment highlights the unique adaptations that bacteria can develop to exploit specific niches within host organisms. Further exploration of its interactions with the host and the implications for gastric health could reveal important aspects of microbial ecology and human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFJR00000000.1 Bac0000111 Helicobacter pylori str. UM163R "Helicobacter pylori str. UM163R is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement as single cells. This strain thrives optimally at a temperature of 37.0°C, suggesting a close association with warm-blooded hosts, where it is typically found in the gastric environment. H. pylori is known for its ability to colonize the acidic conditions of the stomach, which may be facilitated by its unique morphological and physiological traits, including its spiral shape that aids in motility and colonization.↵↵The microaerophilic nature of H. pylori str. UM163R indicates that it requires reduced oxygen levels for optimal growth, which is consistent with its habitat in the gastric mucosa where oxygen concentrations are lower than in the atmosphere. This adaptation allows it to persist in a niche that is inhospitable to many other microorganisms. The strain's association with a host underscores its potential role in the complex microbial dynamics of the gastrointestinal tract.↵↵Given its specific growth conditions and habitat, H. pylori str. UM163R may contribute to the intricate balance of microbial communities within the stomach, potentially influencing the host's health through interactions with other microbial species and the host immune response. Understanding these ecological relationships can provide insights into the broader implications of H. pylori in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LLVX00000000.2 Bac0000112 Helicobacter pylori str. UM246 "Helicobacter pylori strain UM246 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism thrives optimally at a temperature of 37.0°C, aligning with the typical conditions found in the gastric environment of its host. As a host-associated microbe, H. pylori str. UM246 is adapted to the unique physiological conditions present within the stomach, which may influence its metabolic processes and survival strategies.↵↵The microaerophilic nature of H. pylori indicates that it requires specific oxygen levels for optimal growth, which are lower than those found in the atmosphere. This adaptation allows it to colonize the gastric mucosa where oxygen levels are reduced, providing an advantageous niche that may contribute to its persistence in the host.↵↵The traits of H. pylori str. UM246 highlight its specialized adaptations to a host-associated lifestyle, suggesting that its interactions within the gastric environment may be complex and finely tuned. Understanding the physiological traits of this strain can provide insights into its potential roles in the gastric microbiome and its interactions with other microbial communities, which may have implications for gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFKI00000000.1 Bac0000113 Helicobacter pylori str. UM352 "Helicobacter pylori strain UM352 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism, typically found in the gastric mucosa of mammals. H. pylori str. UM352 is microaerophilic, requiring reduced oxygen levels for optimal growth, which reflects its adaptation to the acidic and low-oxygen environment of the stomach. ↵↵The unique morphology and growth requirements of H. pylori str. UM352 suggest that it has evolved specialized mechanisms to survive and proliferate in the harsh conditions of the gastric environment. The microaerophilic nature of this strain may also indicate its reliance on specific metabolic pathways that are suited for low-oxygen conditions, possibly involving fermentation or alternative electron transport chains. Understanding these traits can provide insights into the ecological role of H. pylori within its host, particularly regarding its interactions with the host's immune system and the microbiome. Such adaptations may be crucial for the bacterium’s survival and persistence in a dynamic and often hostile gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFKK00000000.1 Bac0000114 Helicobacter pylori str. ZH05 "Helicobacter pylori strain ZH05 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is known to thrive in a microaerophilic environment, which is indicative of its specialized adaptation to the gastric niche of its host. The optimal growth temperature for H. pylori ZH05 is 37.0°C, aligning with the typical physiological conditions of the human stomach.↵↵As a host-associated organism, H. pylori ZH05 resides within the gastric mucosa, where it plays a complex role in the host’s microbiome. The microaerophilic nature of this strain suggests a reliance on low-oxygen conditions, which are prevalent in the gastric environment. This adaptation not only facilitates its survival but may also influence the overall composition of the gastric microbiota.↵↵The unique combination of its Gram-negative structure, spirilla morphology, and specific environmental requirements underscores the evolutionary adaptations of H. pylori ZH05. These traits may contribute to its ecological role in the human gastrointestinal tract, where it interacts with both the host and other microbial inhabitants, potentially impacting gastric health and disease dynamics. Further exploration of its interactions and functional capabilities could provide insights into the complexities of gastric microbiome ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJED00000000.1 Bac0000115 Helicobacter pylori str. ZH10 "Helicobacter pylori str. ZH10 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe demonstrates a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels, which is consistent with its adaptation to host-associated habitats. Optimal growth occurs at a temperature of 37.0°C, aligning with the typical conditions found within the gastrointestinal tract of various hosts.↵↵The ecological niche of H. pylori str. ZH10 is primarily associated with the gastric mucosa, where it can persist and colonize the acidic environment of the stomach. This organism's unique morphological and physiological traits enable it to navigate the hostile conditions of the gastric lumen, potentially influencing the microbiota composition and local immune responses within the host.↵↵Understanding the specific characteristics of H. pylori str. ZH10 can provide insights into its role in host-microbe interactions and its potential implications for gastric health. The microaerophilic nature of this strain highlights its specialized adaptation to the gastric environment, where it may contribute to the complex dynamics of the microbial ecosystem present in the stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEI00000000.1 Bac0000116 Helicobacter pylori str. ZH106 "Helicobacter pylori str. ZH106 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and occurrence as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for the warm conditions typically found within a host. As a member of the genus Helicobacter, H. pylori str. ZH106 is notably associated with the gastric environment of its host, where it colonizes the mucosal lining of the stomach.↵↵The microaerophilic nature of H. pylori str. ZH106 suggests that it requires reduced levels of oxygen for optimal growth, which aligns with its habitat in the oxygen-limited gastric niche. This adaptation may play a significant role in the bacterium's survival and persistence in the hostile environment of the human stomach, where it can evade immune responses and thrive despite the acidic conditions.↵↵Understanding the traits of H. pylori str. ZH106 contributes to our knowledge of microbial adaptation to specific ecological niches, particularly how certain bacteria can exploit host-associated environments for survival and propagation. This highlights the intricate relationships between microbial species and their hosts, particularly in environments that pose significant physiological challenges." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHS00000000.1 Bac0000117 Helicobacter pylori str. ZH109 "Helicobacter pylori str. ZH109 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the average human body temperature, indicating its adaptation to a host-associated habitat. H. pylori str. ZH109 exhibits microaerophilic oxygen requirements, suggesting that it prefers environments with reduced oxygen levels, a trait that is consistent with its colonization of the gastric mucosa where oxygen concentration is lower than in the external environment.↵↵As a member of the Helicobacter genus, this strain is known for its unique physiology that allows it to navigate the acidic conditions of the stomach. The presence of this bacterium in the host can lead to various interactions with the gastric microenvironment, influencing local pH and potentially interacting with the host's immune responses. The ecological role of H. pylori str. ZH109 may extend beyond mere survival, potentially participating in the complex microbial dynamics of the gastrointestinal tract. Understanding the specific traits of this strain can provide insights into its ecological niche and its interactions within the host, contributing to the broader understanding of microbial communities in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHV00000000.1 Bac0000118 Helicobacter pylori str. ZH112 "Helicobacter pylori strain ZH112 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, suggesting a strong adaptation to the host environment, typically the gastric mucosa of mammals. As a member of the Helicobacter genus, H. pylori ZH112 is known to inhabit the stomach lining, where it is associated with various physiological interactions within the host.↵↵This strain's microaerophilic nature indicates that it requires reduced levels of oxygen for optimal growth, which aligns with its habitat in the oxygen-depleted environment of the stomach. Its spiral morphology may facilitate motility through the viscous gastric mucus, allowing it to colonize and persist in a challenging environment rich in gastric acid.↵↵Understanding the traits of H. pylori ZH112 contributes to our knowledge of microbial adaptations to host-associated habitats. Notably, this strain exemplifies the intricate relationships between microbial life and host physiology, particularly in environments where oxygen levels are limited, and the pH is highly variable. Further research into the specific ecological roles and interactions of H. pylori ZH112 within its host could provide valuable insights into microbial pathogenesis and gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHY00000000.1 Bac0000119 Helicobacter pylori str. ZH118 "Helicobacter pylori strain ZH118 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is adapted to a microaerophilic environment, thriving in conditions with reduced oxygen levels, which is typical of its natural habitat associated with various hosts, particularly in the gastric environment of mammals. The optimal growth temperature for H. pylori str. ZH118 is approximately 37.0°C, aligning with the physiological temperature of many mammalian hosts.↵↵As a member of the Helicobacter genus, this strain exhibits the hallmark traits of its relatives, including the capability to survive in acidic conditions, which is an essential feature for colonization of the stomach lining. The adaptation to a host-associated habitat suggests a complex interplay with the host's immune responses and gastric microbiota, which may influence the strain's survival strategies and potential roles in the gastric ecosystem.↵↵Further studies on Helicobacter pylori str. ZH118 could provide valuable insights into its specific interactions with host factors, contributing to a broader understanding of the dynamics within the gastric microbiome and the evolutionary adaptations of microaerophilic organisms in host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJID00000000.1 Bac0000120 Helicobacter pylori str. ZH121 "Helicobacter pylori strain ZH121 is a Gram-negative bacterium characterized by its spirilla shape and occurs predominantly as single cells. This microbe is microaerophilic, indicating that it requires lower levels of oxygen for optimal growth compared to atmospheric levels. H. pylori str. ZH121 thrives at an optimal temperature of 37.0°C, which corresponds to the average human body temperature, suggesting its adaptation to a host-associated habitat.↵↵The association of H. pylori with human hosts is well-documented, as this species is primarily found in the gastric environment, where it can influence gastrointestinal health. The microaerophilic nature of H. pylori, along with its unique helical morphology, may contribute to its colonization of the gastric mucosa, allowing it to evade host immune responses and establish a persistent infection. Research into this strain can enhance our understanding of the physiological adaptations necessary for survival in the highly acidic environment of the stomach.↵↵Moreover, the single-cell arrangement of H. pylori str. ZH121 may play a role in its motility and ability to navigate through the gastric mucus, which could facilitate its interaction with host tissues. Understanding these traits is crucial for elucidating the bacterium's ecological niche and its potential impact on gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIG00000000.1 Bac0000121 Helicobacter pylori str. ZH126 "Helicobacter pylori strain ZH126 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, indicating its specialized oxygen requirements, which are essential for its survival and growth. Optimal growth for H. pylori ZH126 occurs at 37.0°C, a temperature that coincides with the human body temperature, suggesting its adaptation to a host-associated habitat.↵↵H. pylori is well-known for colonizing the gastric mucosa, where it can influence the host's gastric health. The microaerophilic nature of H. pylori ZH126 likely plays a crucial role in its ability to inhabit the harsh, acidic environment of the stomach, where it utilizes specific metabolic pathways to thrive in lower oxygen concentrations. ↵↵The strain's adaptation to a host-associated habitat and its optimal growth conditions suggest that it may possess unique mechanisms for maintaining homeostasis and evading the host immune response. Understanding these traits can provide insights into the ecological interactions between H. pylori ZH126 and its host, as well as potential implications for its role in gastric microbiome dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIL00000000.1 Bac0000122 Helicobacter pylori str. ZH135 "Helicobacter pylori str. ZH135 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives in microaerophilic conditions, indicating a specific requirement for reduced oxygen levels, which aligns with its natural habitat—host-associated environments. The optimal growth temperature for H. pylori str. ZH135 is approximately 37.0°C, which is consistent with the physiological temperature of the human body, suggesting an adaptation to colonize the gastric mucosa of hosts effectively.↵↵As a member of the Helicobacter genus, this strain is likely to possess motility, facilitated by flagella, allowing it to navigate the viscous environment of the stomach. The microaerophilic nature of H. pylori str. ZH135 may influence its metabolic pathways, potentially impacting its survival and interaction with host tissues.↵↵Moreover, the specific adaptations of H. pylori str. ZH135 to its host-associated habitat may reflect broader ecological dynamics, wherein it plays a role in the complex microbiota of the gastrointestinal tract. Understanding the unique characteristics of this strain could provide insights into its interactions with the host immune system and its potential role in maintaining gastric homeostasis or contributing to dysbiosis." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIU00000000.1 Bac0000123 Helicobacter pylori str. ZH16 "Helicobacter pylori strain ZH16 is a Gram-negative bacterium characterized by its spirilla shape and a cellular arrangement consisting of single cells. This microbe is adapted to a host-associated habitat and exhibits a microaerophilic oxygen requirement, thriving optimally at a temperature of 37.0°C. ↵↵H. pylori str. ZH16's microaerophilic nature indicates that it requires reduced levels of oxygen for growth, which is typically found in the gastric environment of its hosts. This adaptation allows it to colonize the gastric mucosa, where it can survive in the acidic conditions of the stomach. The ability to thrive at a host temperature of 37.0°C further supports its specialized niche within warm-blooded animals, particularly humans.↵↵The single-cell arrangement of H. pylori str. ZH16 may facilitate its motility and colonization ability, as individual cells can navigate through the viscous environment of the gastric mucus more effectively than clustered cells. Understanding the specific traits of this strain can provide insight into its ecological interactions within the host, as well as its potential role in the gastrointestinal microbiome. The unique combination of traits exhibited by H. pylori str. ZH16 suggests a complex evolutionary adaptation to its niche, highlighting the importance of host-associated bacteria in maintaining the balance of microbial communities in the human stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEP00000000.1 Bac0000124 Helicobacter pylori str. ZH25 "Helicobacter pylori strain ZH25 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C and is classified as microaerophilic, indicating that it requires a reduced oxygen environment for growth. As a host-associated organism, H. pylori strain ZH25 is typically found in the gastric mucosa of its hosts, where it plays a significant role in the complex microbiota of the gastrointestinal tract.↵↵The microaerophilic nature of H. pylori strain ZH25 suggests it is adapted to environments with limited oxygen availability, such as the stomach, where atmospheric oxygen levels are lower than those typically found in the external environment. Its spiral morphology may also aid in motility through viscous environments, such as gastric mucus, allowing it to colonize and persist within the gastric lining. Understanding the specific adaptations of H. pylori strain ZH25 to its microenvironment not only sheds light on its biology but may also provide insights into the dynamics of host-microbe interactions within the gastrointestinal ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEY00000000.1 Bac0000125 Helicobacter pylori str. ZH37 "Helicobacter pylori str. ZH37 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in microaerophilic conditions, indicating a requirement for reduced oxygen levels for optimal growth. It is notably adapted to a host-associated habitat, suggesting a commensal or parasitic relationship with its host organism. The optimal growth temperature for H. pylori str. ZH37 is 37.0°C, which aligns with the typical physiological temperature of the mammalian stomach, where this species is often found.↵↵The microaerophilic nature of H. pylori str. ZH37 indicates that it likely utilizes metabolic pathways suited to low-oxygen environments, which is consistent with its habitat in the gastric mucosa. This adaptation may allow it to evade the host's immune response while surviving in a harsh acidic environment. Furthermore, the single-cell arrangement of this bacterium may facilitate its motility and colonization within the viscous gastric mucus, enabling it to maintain its niche. ↵↵Overall, the ecological insight provided by the traits of H. pylori str. ZH37 highlights the specialized adaptations that allow this bacterium to persist in the complex and challenging environment of the stomach, underscoring its potential roles in host-microbe interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFK00000000.1 Bac0000126 Helicobacter pylori str. Zh38 "Helicobacter pylori str. Zh38 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, making it well-suited to its host-associated habitat, where it is commonly found in the gastric environment of mammals. ↵↵As a member of the Helicobacter genus, H. pylori str. Zh38 likely adapts to the harsh conditions of the stomach, including acidic pH levels, through specialized physiological mechanisms. Its microaerophilic nature indicates that it requires reduced levels of oxygen for growth, reflecting its adaptation to the relatively low oxygen concentrations found in the gastric mucosa. The ability to survive and proliferate in this unique niche suggests H. pylori str. Zh38 may play a role in influencing the microbial community structure within the host’s gut environment.↵↵Further exploration of this strain could reveal insights into its interactions with host organisms and its potential contributions to the gastric microbiome, as well as its adaptive strategies that allow it to persist in a challenging habitat. Understanding the dynamics of H. pylori str. Zh38 could enhance our knowledge of microbial ecology in host-associated environments and the evolutionary pressures that shape such organisms." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFL00000000.1 Bac0000127 Helicobacter pylori str. ZH39 "Helicobacter pylori str. ZH39 is a Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C and exhibits a microaerophilic oxygen requirement, indicating its adaptation to environments with reduced oxygen concentrations, such as the gastric mucosa of its host. ↵↵H. pylori is well-known for its association with the human gastric environment, where it establishes a niche that allows it to persist despite the harsh acidic conditions. The microbe's spiral morphology is thought to enhance its motility, facilitating penetration into the protective mucous layer of the stomach lining. ↵↵The habitat of H. pylori str. ZH39 is primarily host-associated, reinforcing its symbiotic relationship with humans and potentially influencing the host's gastric health. This strain, like other H. pylori strains, may contribute to the complex dynamics of the gastric microbiome, suggesting that its presence could play a role in modulating local immune responses or influencing the overall microbial composition in the stomach.↵↵Overall, the unique adaptations of H. pylori str. ZH39 to its microaerophilic environment and its ability to thrive at physiological temperatures highlight its evolutionary success as a resident of the human gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFM00000000.1 Bac0000128 Helicobacter pylori str. ZH42 "Helicobacter pylori str. ZH42 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and occurrence as single cells. This strain thrives at an optimal temperature of 37.0°C, indicating its adaptation to the human body, where it is commonly found in association with gastric tissues. ↵↵As a member of the Helicobacter genus, H. pylori str. ZH42 occupies a unique ecological niche within the host's gastric environment, where it interacts with the gastric mucosa and may influence local microbiota dynamics. The microaerophilic nature of this strain suggests that it requires reduced oxygen levels for optimal growth, which aligns with its habitat in the stomach, where oxygen concentration is lower than in the external environment.↵↵The unique traits of H. pylori str. ZH42 not only facilitate its survival in the harsh gastric environment but may also play a role in the broader ecological interactions within the host's gastrointestinal microbiome. Understanding its specific adaptations and interactions could provide insights into the complex relationships between host and microbe in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFP00000000.1 Bac0000129 Helicobacter pylori str. ZH47 "Helicobacter pylori strain ZH47 is a Gram-negative bacterium characterized by its spirilla shape and typically found as single cells. This microbe demonstrates a microaerophilic oxygen requirement, indicating its preference for environments with reduced oxygen levels, which is consistent with its association with host habitats. Optimal growth occurs at a temperature of 37.0 °C, aligning with the physiological conditions found in the gastrointestinal tract of mammals, particularly humans.↵↵As a host-associated organism, H. pylori str. ZH47 is likely adapted to thrive in the acidic environment of the stomach, where it may play a role in the complex microbial community residing there. The unique morphology of this strain, along with its specific growth requirements, suggests potential adaptations that allow it to colonize and persist in such a challenging niche. Further investigation into its interactions within the host environment may provide insights into its ecological role and its impact on host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFT00000000.1 Bac0000130 Helicobacter pylori str. ZH52 "Helicobacter pylori strain ZH52 is a Gram-negative bacterium characterized by its spirilla shape and the arrangement of cells in singles. This microbe exhibits a microaerophilic oxygen requirement, thriving optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the mammalian stomach. As a host-associated organism, H. pylori strain ZH52 is adapted to live in the gastric environment, where it may play a role in the complex interactions between the host's immune system and the gastric microbiome.↵↵The microaerophilic nature of H. pylori suggests that it requires low levels of oxygen for growth, which is consistent with its habitat in the gastric mucosa, an area where oxygen levels are relatively low compared to atmospheric conditions. The unique spiral morphology of H. pylori likely facilitates its motility within the viscous gastric mucus, allowing it to colonize the stomach lining effectively.↵↵The ecological niche of H. pylori strain ZH52 highlights the bacterium's potential role in the gastric ecosystem, where it may interact with other microbial species and influence the overall microbial community structure. Understanding such interactions could provide insights into the implications of H. pylori in gastric health and disease, as well as its evolutionary adaptations to a highly specialized habitat." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFY00000000.1 Bac0000131 Helicobacter pylori str. ZH72 "Helicobacter pylori str. ZH72 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe demonstrates an optimal growth temperature of 37.0°C, indicating its adaptation to the human body, where it is primarily found as a host-associated organism. H. pylori str. ZH72 exhibits microaerophilic oxygen requirements, thriving in environments with reduced oxygen levels, which is characteristic of its niche in the gastric mucosa.↵↵The unique morphology of H. pylori, coupled with its specific growth conditions, underscores its specialized lifestyle in the gastric environment. The microaerophilic nature of this strain may suggest an evolutionary adaptation allowing it to evade the host's immune response while exploiting the nutrient-rich conditions of the stomach lining. Understanding the traits of H. pylori str. ZH72 can provide insights into its ecological role within the human gastric microbiome, as it may influence local pH levels and interact with other microbial communities present in the host's gastrointestinal tract. Further investigation into the ecological interactions and metabolic capabilities of this strain could enhance our understanding of its role in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGQ00000000.1 Bac0000132 Helicobacter pylori str. ZH75 "Helicobacter pylori str. ZH75 is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, suggesting a close association with warm-blooded hosts, where it typically resides in the gastric environment. ↵↵As a member of the Helicobacter genus, H. pylori str. ZH75’s microaerophilic nature indicates its requirement for reduced oxygen levels, which aligns with its adaptation to the acidic conditions of the stomach. The bacterium's habitat is exclusively host-associated, emphasizing its specialized role in the gastric microbiome of various organisms.↵↵The unique morphological and physiological traits of H. pylori str. ZH75 may offer insights into its ecological niche, particularly its potential interactions within the host's gastric environment. Understanding these interactions could provide valuable information about the organism's role in host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGR00000000.1 Bac0000133 Helicobacter pylori str. ZH78 "Helicobacter pylori strain ZH78 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and tendency to exist as single cells. This organism thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to the host-associated habitat, typically found in the gastric mucosa of humans and other mammals. ↵↵The microaerophilic nature of H. pylori indicates that it requires lower levels of oxygen for growth compared to atmospheric conditions, suggesting a specialized metabolic adaptation that allows it to survive in the oxygen-limited environment of the stomach. The Gram-negative cell wall structure further contributes to its resilience in the acidic gastric environment, potentially aiding in its colonization and persistence. ↵↵Understanding the precise ecological niche of H. pylori strain ZH78 within the host's gastric environment may provide insights into its interactions with host immune responses and the gastric microbiome. These traits underscore the bacterium's role in maintaining a unique ecological balance while also highlighting the complexities of its biological relationships within the host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGU00000000.1 Bac0000134 Helicobacter pylori str. ZH88 "Helicobacter pylori strain ZH88 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0 degrees Celsius, which aligns with its habitat as a host-associated microbe, typically found in the gastric mucosa of the stomach. ↵↵As a member of the Helicobacter genus, H. pylori is known for its distinctive spiral morphology, which may facilitate its motility through viscous environments, such as gastric mucus. The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for growth, a condition prevalent in the gastric environment, where oxygen concentration is lower than in the atmosphere. ↵↵Understanding the specific growth requirements and morphological traits of H. pylori strain ZH88 is crucial for elucidating its interactions with host systems and potential implications for human health. Given its adaptation to life in the stomach, this strain may provide insights into the mechanisms by which gastric-associated bacteria navigate extreme environments and maintain their viability in the presence of gastric acid and other defensive host factors." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHD00000000.1 Bac0000135 Helicobacter pylori str. ZH91 "Helicobacter pylori strain ZH91 is a Gram-negative bacterium characterized by its spirilla shape and arrangement in singles. This microbe thrives optimally at a temperature of 37.0°C, aligning with the typical physiological conditions found within the stomach of its host. H. pylori str. ZH91 is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth, which is consistent with the low-oxygen environment of the gastric mucosa where it is commonly found.↵↵The habitat of H. pylori str. ZH91 is closely associated with its host, suggesting a specialized adaptation to the gastric environment, which may influence its metabolic pathways and survival strategies. The unique structural and physiological traits of this strain likely contribute to its ability to colonize the gastric epithelium, although its specific interactions with host tissues and immune responses require further investigation. Understanding these characteristics of H. pylori str. ZH91 enhances our knowledge of its ecological niche and potential roles within the microbiome of the gastrointestinal tract, as well as its interactions with host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHF00000000.1 Bac0000136 Helicobacter pylori str. ZH93 "Helicobacter pylori strain ZH93 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns well with its habitat as it is closely associated with the host, typically residing within the gastric mucosa of humans and other mammals. ↵↵The microaerophilic nature of H. pylori ZH93 indicates a requirement for low levels of oxygen, which is consistent with the oxygen-limited conditions of the stomach environment. This adaptation allows the microbe to maintain its viability and metabolic functions in a habitat where higher oxygen levels would be detrimental. ↵↵Given its host-associated habitat, H. pylori ZH93 likely plays a significant role in the complex interactions within the gastric microbiome, including potential influences on host immune responses and nutrient absorption. Further studies could elucidate the specific ecological niches it occupies and its interactions with both the host and other microbial communities in the gastrointestinal tract. Understanding these dynamics may provide insights into the broader implications of H. pylori in human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHG00000000.1 Bac0000137 Helicobacter pylori str. ZH97 "Helicobacter pylori strain ZH97 is a Gram-negative, spiral-shaped bacterium that typically exists as single cells and is adapted to a microaerophilic environment. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions found in the human stomach, its primary habitat. Helicobacter pylori is known for its association with host organisms, where it colonizes the gastric mucosa and may influence various gastrointestinal processes.↵↵The microaerophilic nature of H. pylori indicates its requirement for reduced levels of oxygen for growth, distinguishing it from strictly aerobic and anaerobic organisms. This trait is crucial for its survival in the harsh acidic environment of the stomach, where it can utilize the available oxygen while avoiding the detrimental effects of higher concentrations. ↵↵Overall, Helicobacter pylori strain ZH97 exemplifies the intricate adaptations that bacteria can develop to thrive in specific host-associated niches, particularly in environments characterized by fluctuating oxygen levels and extreme acidity. Understanding these traits provides insight into the ecological roles of H. pylori within the human gastrointestinal tract and may inform further research into its interactions with host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHK00000000.1 Bac0000138 Helicobacter cinaedi "Helicobacter cinaedi is a microbe that thrives in mesophilic environments, meaning it has a temperature preference category of 20-45°C. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, typically in the form of carbohydrates or proteins. H. cinaedi produces energy through the process of fermentation, a metabolic pathway that converts glucose into lactic acid. Its Gram stain classification is negative, which means it does not retain the crystal violet stain used in the Gram staining technique, resulting in a pink color. The microbe has a helical shape, characteristic of the genus Helicobacter, which is typically composed of spiral-shaped bacteria. H. cinaedi can be found in a variety of body sites, including the respiratory, gastrointestinal, and genitourinary tracts, as well as skin and soft tissue. Its ability to colonize multiple sites is likely due to its ability to adapt to different environments and exploit available nutrient sources. Oxygen preference for H. cinaedi is facultative anaerobic, meaning it can grow in the presence of oxygen but can also survive and thrive in low-oxygen environments. While H. cinaedi is not typically considered a major pathogen, it can cause disease in immunocompromised individuals, such as those with HIV/AIDS or undergoing chemotherapy. In these cases, the microbe can cause a range of symptoms, from mild skin lesions to severe systemic infections. Despite its relatively innocuous nature, H. cinaedi is an important member of the human microbiome, playing a role in maintaining the balance of the intestinal ecosystem. Its ability to colonize multiple sites and adapt to changing environments makes it a resilient and fascinating microbe." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi Negative Microaerophile intestinal resident; wastewater treatment plants 213 UGHX00000000.1 Bac0000139 Helicobacter muridarum Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter muridarum Yes microaerophile 216 UGJE00000000.1 Bac0000140 Alteromonas sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. A. millepora corals; mucus layer; skeleton; water column 232 NVVC00000000.1 Bac0000141 Brucella abortus str. BAU21/S4023 "Brucella abortus str. BAU21/S4023 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits facultative aerobic metabolism. This strain does not form spores and is optimally adapted to a temperature of 37.0°C, which coincides with the physiological temperature of many mammalian hosts. The bacterium's habitat is diverse, suggesting that it may thrive in various environments, potentially including those associated with livestock and wildlife.↵↵The nonsporulating nature of Brucella abortus indicates a reliance on stable environmental conditions for survival and growth, which may be linked to its ecological niches. As a facultative aerobe, B. abortus str. BAU21/S4023 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to adapt to fluctuating oxygen levels in its surroundings. This metabolic flexibility may enhance its survival in different habitats, where it can exploit various organic substrates.↵↵Given its optimal growth temperature and diverse habitats, B. abortus str. BAU21/S4023 may play a role in the microbiomes of its environments, influencing nutrient cycling and interactions with other microorganisms. This adaptability underscores the ecological significance of Brucella species in their natural habitats, where they may contribute to the dynamic balance of microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella abortus Negative Rod No 1 2 Facultative aerobe 37 Mesophilic Multiple Free living Singles Nonsporulating 235 SRJJ00000000.2 Bac0000142 Flavobacterium sp. "Flavobacterium sp. is a Gram-negative bacterium that is typically found in diverse environments, including nasal discharge and natural springs. This genus is characterized by its aerobic metabolism, requiring oxygen for growth and survival. The Gram-negative nature of Flavobacterium sp. indicates the presence of a double membrane structure, which is a hallmark of this group of bacteria, often contributing to their adaptability in various ecological niches.↵↵The occurrence of Flavobacterium sp. in nasal discharge suggests a potential role in the microbial communities associated with the nasal cavity, although the implications of this association remain to be fully understood. Similarly, its presence in natural springs highlights its adaptability to aquatic environments, where it may play a role in nutrient cycling and the degradation of organic matter.↵↵Understanding the ecological roles of Flavobacterium sp. could provide insights into the dynamics of microbial communities in both host-associated and natural environments. This adaptability and versatility underscore the potential significance of Flavobacterium sp. in biogeochemical processes, particularly in freshwater ecosystems, where its metabolic activities might influence the overall health and stability of these habitats. Further investigation into the specific functions and interactions of Flavobacterium sp. within these environments could enhance our understanding of microbial ecology and the contributions of bacteria to ecosystem processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. negative aerobic nasal discharge; natural spring 239 PAXJ00000000.1 Bac0000143 Chryseobacterium taihuense "Chryseobacterium taihuense is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism and a non-spore-forming nature. This microbial species demonstrates optimal growth at a temperature of 32.0°C, indicating a preference for mesophilic conditions. As a member of the Chryseobacterium genus, C. taihuense may be involved in various ecological interactions, although specific ecological roles require further investigation.↵↵The Gram-negative nature of C. taihuense suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in diverse environments. The facultative nature of its oxygen requirement implies that C. taihuense can survive and thrive both in the presence and absence of oxygen, allowing it to inhabit various ecological niches, from oxygen-rich environments to more anoxic conditions.↵↵The ability of C. taihuense to grow optimally at 32.0°C suggests that it may be well-suited to environments that experience moderate temperatures, which could include soil, freshwater, or possibly plant-associated habitats. Understanding the growth conditions and metabolic capabilities of C. taihuense can provide insights into its potential role in nutrient cycling and its interactions with other microorganisms in its habitat. Further studies on its physiological and ecological traits could reveal its significance in microbial communities and biogeochemical processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium taihuense Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic non-spore-forming Animal; worm 250 NZ_LR215974.1 Bac0000144 Chryseobacterium gleum "Chryseobacterium gleum is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments. This organism is part of the family Weeksellaceae and is characterized by its ability to utilize a variety of organic compounds as carbon sources, which may contribute to its adaptability in diverse habitats. Its aerobic metabolism suggests a reliance on oxygen for growth and energy production, which is a significant trait for understanding its ecological roles.↵↵Chryseobacterium gleum has been isolated from various environments, including soil and aquatic systems, indicating its presence in microbial communities associated with organic matter decomposition. The species is known for its distinctive yellow pigmentation, a trait that may offer advantages in certain ecological niches, possibly by influencing interactions with other microorganisms or by aiding in nutrient acquisition.↵↵Understanding the metabolic capabilities of Chryseobacterium gleum can provide insights into its role in biogeochemical cycles, particularly in the breakdown of organic materials in its native habitats. Its potential for biodegradation and bioremediation underscores the importance of exploring the functional diversity of this genus within microbial ecosystems. The ecological dynamics in which Chryseobacterium gleum participates highlight the intricate relationships between microbial life and environmental conditions, emphasizing the significance of studying such organisms in the context of environmental microbiology." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gleum negative Rod Yes aerobic Animal; worm 250 NZ_LR134289.1 Bac0000145 Chryseobacterium indologenes "Chryseobacterium indologenes is a Gram-negative, aerobic rod-shaped bacterium that belongs to the family Weeksellaceae. It is characterized by its distinct rod morphology, which is typical of many members within the genus Chryseobacterium. As an aerobic organism, C. indologenes requires oxygen for growth and metabolic processes, positioning it within environments where oxygen is readily available.↵↵This microbe is notable for its ability to thrive in various ecological niches, including soil and aquatic environments, where it can play a role in nutrient cycling. The aerobic nature of C. indologenes suggests that it may contribute to the decomposition of organic matter, thereby influencing the microbial community structure and dynamics within its habitat.↵↵Furthermore, the presence of C. indologenes in diverse environments hints at its potential adaptability to varying ecological conditions, although specific interactions with other microorganisms or its roles within food webs remain to be elucidated. Understanding the ecological significance of Chryseobacterium indologenes could provide insights into the functional roles of similar bacteria in environmental processes and their potential applications in biotechnology or bioremediation." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indologenes negative Rod aerobic 253 NZ_CP033760.1 Bac0000146 Chryseobacterium indoltheticum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indoltheticum dairy products; urban sewage sludge 254 UFVR00000000.1 Bac0000147 Myroides odoratus "Myroides odoratus is a mesophilic microbe, preferring temperatures between 20°C to 40°C. It is a chemoheterotroph, utilizing organic compounds as its energy source and carbon source. In terms of energy production, M. odoratus is a respiratory bacterium, generating energy through the process of aerobic respiration. This bacterium is gram-negative, meaning its cell wall lacks a thick peptidoglycan layer. Its shape is generally rod-shaped, with cells typically measuring 0.5-1.5 μm in length. Myroides odoratus can be found in a variety of locations, including the human mouth, respiratory tract, skin, and gastrointestinal tract. It has also been isolated from environmental sources such as soil, water, and air. When it comes to oxygen preference, M. odoratus is a facultative anaerobe, able to thrive in both aerobic and anaerobic environments. In terms of its role in the ecosystem, Myroides odoratus plays a crucial part in the breakdown of complex organic matter. It is able to degrade proteins, carbohydrates, and other organic compounds, releasing nutrients back into the environment. Additionally, M. odoratus has been used in the production of bioproducts, such as enzymes and biofuels. Finally, it is worth noting that Myroides odoratus has been implicated in several infections, including pneumonia, septicemia, and wound infections. However, it is generally considered a non-pathogenic bacterium, and its importance lies in its role as a decomposer and producer of bioactive compounds. Its unique ability to thrive in both aerobic and anaerobic environments makes it a valuable tool in biotechnology applications." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratus Negative Rod No 1 Aerobic Chemoheterotroph Nonsporulating 256 UGQN00000000.1 Bac0000148 Sphingobacterium thalpophilum Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium thalpophilum activated sludge 259 NZ_LR590484.1 Bac0000149 Francisella tularensis subsp. novicida str. DPG 3A-IS "Francisella tularensis subsp. novicida str. DPG 3A-IS is a Gram-negative, rod-shaped bacterium that typically exists as single cells and requires oxygen for growth, classifying it as an aerobe. This subspecies of Francisella tularensis is noted for its presence in aquatic environments, suggesting an adaptability to diverse habitats, likely including fresh and possibly brackish water systems. The rod shape and single-cell arrangement may facilitate its motility and interaction within these habitats, potentially influencing its ecological role in aquatic microbiomes.↵↵As a member of the Francisella genus, this strain may share metabolic and physiological traits with other species within the group, although specific biochemical characteristics and pathogenicity details are not disclosed in the available data. The ecological implications of its aquatic habitat suggest a potential involvement in nutrient cycling or interactions with other microbial communities, although explicit roles remain to be elucidated.↵↵Notably, the aerobic nature of F. tularensis subsp. novicida str. DPG 3A-IS may confer advantages in oxygen-rich environments, positioning it uniquely in the aquatic ecosystem. This trait could allow it to exploit niches that are less favorable for anaerobic organisms, thereby influencing microbial diversity and dynamics in its surrounding environment. Further research could provide insights into its specific ecological interactions and contributions to aquatic microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 264 NZ_CP010104.1 Bac0000150 Thermus aquaticus str. YT-1 "Thermus aquaticus str. YT-1 is a nonsporulating, rod-shaped bacterium that thrives in high-temperature environments, with an optimal growth temperature of 75.0°C. This thermophilic organism is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds rather than through photosynthesis or inorganic sources. ↵↵Isolated from a hot spring habitat, T. aquaticus str. YT-1 has adapted to extreme thermal conditions that are inhospitable to many other microbial life forms. Its ability to metabolize a variety of organic substrates in such environments highlights its ecological role in nutrient cycling within geothermal ecosystems. The unique adaptations of T. aquaticus str. YT-1 make it a valuable subject of study, particularly in the context of biotechnological applications, such as the development of heat-stable enzymes for industrial processes. Furthermore, the bacterium's habitat in hot springs suggests it may contribute to the overall microbial diversity and functional dynamics of these high-temperature ecosystems, playing a crucial role in maintaining the biochemical balance in such extreme environments." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus Rod No 1 75 Chemoheterotroph Thermophilic Hot spring Nonsporulating 271 LHCI00000000.1 Bac0000151 Thermus thermophilus "Thermus thermophilus is a thermophilic microbe that thrives in extremely hot environments, characterized by a temperature preference category of ""extremely thermophilic"". This microbe is a chemoheterotroph, deriving its energy from the breakdown of organic compounds, and producing energy through the process of respiration. It does not require light as an energy source, operating independently of it. T. thermophilus is a Gram-type positive, meaning it stains purple with Gram staining, and its shape is typically rod-shaped. Thermus thermophilus is found in a wide range of environments, including hot springs, volcanic areas, and oil rigs, where it can colonize surfaces and survive in temperatures between 55°C and 80°C. It is an obligate aerobe, requiring the presence of oxygen to carry out cellular respiration and metabolize its energy sources. One of the most striking features of T. thermophilus is its ability to survive in extreme temperatures, making it a vital component of many ecosystems. Its enzymes are specially adapted to function optimally at high temperatures, allowing it to outcompete other microorganisms that are unable to tolerate such conditions. This unique characteristic has also made T. thermophilus a valuable tool in biotechnology, with its enzymes being used in various applications, such as textile and detergent manufacturing, and biocatalysis. Despite its ability to thrive in extreme temperatures, T. thermophilus has also been found to have roles in the human body. Some studies suggest that it may play a role in the human gut microbiome, influencing the metabolism and function of the gut, which could have implications for our understanding of gastrointestinal health. In addition to its ecological significance and biotechnological applications, T. thermophilus has also been used as a model organism to study protein folding and structure, as its enzymes are highly stable and resistant to degradation." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus Negative NA NA 1 2 Aerobe 0 Thermophilic Specialized 274 NZ_LR027518.1 Bac0000152 Thermus filiformis str. ATCC 43280 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus filiformis 276 JPSL00000000.2 Bac0000153 Comamonas testosteroni str. WDL7 "Comamonas testosteroni strain WDL7 is a Gram-negative, non-sporulating rod-shaped bacterium that thrives in aerobic environments. This microorganism is capable of utilizing a variety of substrates, which suggests a versatile metabolic capacity, allowing it to inhabit multiple habitats. As an aerobe, C. testosteroni strain WDL7 requires oxygen for its growth and metabolic activities, reflecting its adaptation to environments rich in this gas.↵↵The ability of Comamonas testosteroni to metabolize diverse organic compounds may contribute to its ecological role in nutrient cycling, particularly in environments where organic material is abundant. This functional versatility indicates potential applications in bioremediation, where such bacteria could be harnessed to degrade pollutants or organic waste. Understanding the metabolic pathways of C. testosteroni strain WDL7 further enhances its potential utility in environmental biotechnology, where the exploitation of aerobic processes can facilitate the breakdown of complex organic materials." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni Negative Rod No 1 2 Aerobe Mesophilic Multiple Free living Nonsporulating 285 JNVD00000000.1 Bac0000154 Pseudomonas aeruginosa str. MH19 "Pseudomonas aeruginosa str. MH19 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic aerobe, indicating its reliance on organic compounds for energy while requiring oxygen for growth. It thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions.↵↵Pseudomonas aeruginosa is known for its versatility in habitat, as it can inhabit a multitude of ecological niches. This adaptability may result from its metabolic flexibility, allowing it to utilize a wide range of organic substrates. The rod shape and single-cell arrangement are characteristic of many Pseudomonas species, facilitating motility and potentially enhancing its survival in diverse environments.↵↵The ability of Pseudomonas aeruginosa str. MH19 to thrive in various habitats may also contribute to its ecological role as a decomposer, breaking down complex organic materials in its surroundings. This metabolic capability allows it to participate in nutrient cycling, highlighting its importance in maintaining ecosystem balance. The strain's ecological adaptability and metabolic versatility underscore the significance of Pseudomonas aeruginosa in environmental microbiology, particularly in contexts where organic matter decomposition is critical for ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 CDAZ00000000.1 Bac0000155 Pseudomonas paraeruginosa "Pseudomonas paraeruginosa is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a heterotroph, relying on organic compounds for its energy needs, and demonstrates an aerobic metabolism, necessitating the presence of oxygen for growth. Pseudomonas paraeruginosa thrives optimally at a temperature of 25.0°C, which suggests a preference for ambient environmental conditions. ↵↵This bacterium is known to inhabit a variety of environments, indicating its versatility and adaptability to different ecological niches. Its ability to survive and proliferate in diverse habitats may contribute to its significance in various biological processes, including decomposition and nutrient cycling.↵↵An intriguing aspect of Pseudomonas paraeruginosa is its potential role in bioremediation. Given its ability to thrive in varied environments and utilize a range of organic substrates, this microbe may play a crucial role in the breakdown of pollutants, thereby contributing to ecosystem health and sustainability. This trait underscores the importance of understanding microbial diversity and functionality in environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas paraeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 NZ_CP027169.1 Bac0000156 Pseudomonas aeruginosa "Pseudomonas aeruginosa is a type of Gram-negative, rod-shaped bacterium that thrives in a temperature range of 37°C to 42°C, placing it in the mesophilic temperature preference category. This bacterium is a chemoheterotroph, deriving its energy from the breakdown of organic compounds, rather than through photosynthesis or chemoautotrophy. P. aeruginosa is able to produce energy through the process of aerobic respiration, utilizing oxygen as its terminal electron acceptor. The bacterium's cell wall reaction to Gram staining is negative, indicating the presence of a thin peptidoglycan layer and an outer membrane. Its rod-shaped morphology is typical of many species of Pseudomonas. P. aeruginosa can be found in all body sites, including the respiratory, urinary, and gastrointestinal tracts, as well as on the skin and in wounds. In terms of oxygen preference, P. aeruginosa is an obligate aerobe, requiring the presence of oxygen to survive and grow. It is not capable of surviving in the absence of oxygen, nor is it able to tolerate low oxygen levels. Pseudomonas aeruginosa is a versatile and opportunistic pathogen, causing a wide range of diseases, from mild infections to life-threatening conditions such as pneumonia, meningitis, and septicemia. Its ability to produce a biofilm, a complex matrix of extracellular polymeric substances, allows it to adhere to surfaces and evade the host immune system. Additionally, P. aeruginosa has developed resistance to many antibiotics, making it a significant challenge in the treatment of infections. Despite these challenges, researchers continue to study this microbe in the hopes of developing new treatments and therapies." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 NFFZ00000000.1 Bac0000157 Burkholderia cepacia "Burkholderia cepacia is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments. It belongs to the category of chemoheterotrophs, meaning it derives its energy from the breakdown of organic compounds and uses carbon dioxide as its energy source. This microbe is capable of aerobic respiration, which involves the use of oxygen to generate energy. In terms of its gram stain, Burkholderia cepacia has a negatively-staining cell wall, indicating the presence of a lipopolysaccharide layer. Physiologically, B. cepacia exhibits a bipolar staining pattern, where it has a Gram-negative cell wall with a distinctive ""safe"" zone at the ends, giving it a polar appearance. This unique morphology is a characteristic of its species. Furthermore, it can be found in various environments, including soil, water, and plants, making it a ubiquitous microorganism. In terms of its oxygen preference, B. cepacia is a facultative anaerobe, meaning it can grow and thrive in the presence or absence of oxygen. This adaptability allows it to colonize a wide range of environments, from aerobic to anaerobic niches. Additionally, it exhibits a preference for a moderately alkaline pH, typically found in environments with high levels of nutrients. Burkholderia cepacia has been recognized for its ability to form biofilms, complex communities of microorganisms attached to surfaces. This unique ability allows it to colonize diverse hosts, including humans, animals, and plants. In fact, its ability to infect individuals with compromised immune systems, such as those with cystic fibrosis, has garnered significant attention from researchers and clinicians. Despite its role as an opportunistic pathogen, B. cepacia has also been investigated for its potential applications in biotechnology and medicine. Its capacity to degrade pollutants, such as pesticides and heavy metals, has made it a valuable tool for environmental remediation. Furthermore, its antimicrobial properties have been explored for the development of novel antibiotics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 LPKB00000000.1 Bac0000158 Brevundimonas diminuta str. ATCC (B)19146 (B)19146 "Brevundimonas diminuta str. ATCC (B)19146 is a Gram-negative, strictly anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This strain is part of the broader Brevundimonas genus, which is known for its diverse metabolic capabilities and adaptability to various ecological niches. As a member of the Bacteroidetes phylum, B. diminuta demonstrates a unique cellular structure typical of Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides.↵↵The anaerobic nature of B. diminuta suggests that it has evolved mechanisms to utilize alternative electron acceptors for energy production, which may be crucial for its survival in anoxic environments. This trait positions the organism as a potential player in biogeochemical cycles, particularly in anaerobic ecosystems where organic matter decomposition occurs. ↵↵Studies on Brevundimonas diminuta have highlighted its capacity to degrade various organic compounds, which may contribute to nutrient recycling in sedimentary environments. This metabolic versatility emphasizes the ecological importance of B. diminuta, as it aids in the breakdown of complex organic materials, thereby influencing microbial community dynamics and nutrient availability in anaerobic habitats. Understanding the specific metabolic pathways utilized by this strain could provide insights into its role in both natural and engineered anaerobic processes, such as bioremediation and wastewater treatment." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas diminuta Negative Anaerobe 293 NZ_CP035093.1 Bac0000159 Pseudomonas fluorescens "Pseudomonas fluorescens is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments with temperatures between 10°C and 40°C, classified as a thermotolerant microbe. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, rather than producing its own food through photosynthesis or chemosynthesis. Pseudomonas fluorescens uses a variety of metabolic pathways to produce energy, including aerobic respiration, nitrate reduction, and glucose fermentation. The bacteria's cell wall is characterized by a gram-negative staining pattern, indicating the presence of a thin peptidoglycan layer and an outer membrane. Its rod-shaped morphology measures approximately 0.5-1.5 μm in length and 0.2-0.6 μm in width. Pseudomonas fluorescens is found in a wide range of environments, including soil, water, and the human body, where it can colonize various body sites such as the skin, respiratory tract, and gastrointestinal tract. The microbe is an obligate aerobe, requiring the presence of oxygen to survive and reproduce. One of the most notable features of Pseudomonas fluorescens is its ability to produce a greenish-blue pigment called pyoverdin, which is responsible for its fluorescent appearance under ultraviolet light. This pigment also plays a key role in the bacteria's ability to compete with other microorganisms for limited resources. Pseudomonas fluorescens is a model organism in scientific research due to its ability to degrade pollutants, produce antibiotics, and interact with plants and animals. Its genome has been fully sequenced, providing valuable insights into its metabolism, physiology, and adaptation to various environments. In summary, Pseudomonas fluorescens is a versatile and widely distributed microbe that thrives in diverse environments, using a variety of metabolic pathways to produce energy and interacting with its surroundings through the production of biomolecules such as pyoverdin. Its ability to adapt to different conditions, degrade pollutants, and produce antibiotics make it an important model organism for scientific research." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_CP012831.1 Bac0000160 Pseudomonas fluorescens str. 2P24 "Pseudomonas fluorescens str. 2P24 is a Gram-negative, rod-shaped bacterium that typically occurs as individual cells. This strain exhibits heterotrophic metabolism, utilizing organic compounds as an energy source, and thrives in aerobic environments, indicating its requirement for oxygen during metabolic processes. The optimal growth temperature for P. fluorescens str. 2P24 is 25°C, suggesting a preference for mesophilic conditions, which are commonly found in various habitats.↵↵This bacterium is known to inhabit multiple environments, which may include soil, water, and plant surfaces, reflecting its adaptability and ecological versatility. The presence of Pseudomonas fluorescens in diverse habitats underscores its role in various biogeochemical processes, including nutrient cycling and organic matter decomposition.↵↵The ability of P. fluorescens str. 2P24 to thrive in aerobic conditions and its heterotrophic lifestyle may confer competitive advantages in nutrient-rich environments, where it can play a significant role in microbial interactions. Additionally, its capacity to persist in multiple habitats highlights its potential applications in bioremediation and agriculture, where it could contribute to soil health and plant growth promotion. Overall, Pseudomonas fluorescens str. 2P24 exemplifies the ecological significance of bacteria in terrestrial ecosystems, particularly in relation to nutrient dynamics and microbial community structure." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_CP025542.1 Bac0000161 Pseudomonas fluorescens str. CFBP13517 "Pseudomonas fluorescens strain CFBP13517 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as an aerobic heterotroph. This strain thrives optimally at a temperature of 25.0°C and is known to inhabit a variety of environments, suggesting its adaptability to diverse ecological niches. ↵↵As a member of the Pseudomonas genus, P. fluorescens is typically associated with soil and water, where it plays a crucial role in nutrient cycling and organic matter decomposition. The heterotrophic nature of this bacterium indicates that it derives energy from organic compounds, which may contribute to its versatility in utilizing different substrates found in its varied habitats.↵↵Additionally, the aerobic requirement underlines its dependence on oxygen for metabolic processes, which is common among many Pseudomonas species. This trait may influence its distribution in environments where oxygen levels fluctuate, potentially allowing P. fluorescens str. CFBP13517 to thrive in microaerophilic conditions or in the presence of other microbial populations.↵↵The ecological versatility of Pseudomonas fluorescens strain CFBP13517 highlights its potential role in bioremediation and as a model organism for studying microbial physiology and interactions within complex ecosystems. Understanding its metabolic capabilities and ecological interactions may provide insights into its applications in environmental microbiology and sustainable practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 QGAI00000000.1 Bac0000162 Pseudomonas fluorescens str. ICMP3636 "Pseudomonas fluorescens str. ICMP3636 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 25.0°C and relies on organic compounds as a heterotrophic energy source, indicating its adaptability to various environments. As an aerobic organism, P. fluorescens str. ICMP3636 requires oxygen for its metabolic processes and can be found in diverse habitats, reflecting its ecological versatility. ↵↵This bacterium is known for its ability to survive in both soil and water environments, which may play a significant role in nutrient cycling and the biodegradation of organic pollutants. The presence of Pseudomonas fluorescens in multiple habitats underscores its potential as a beneficial microbe in bioremediation strategies, as it may contribute to the degradation of harmful substances in contaminated sites. The adaptability of this strain to different ecological niches highlights its significance in microbial ecology, particularly in the context of environmental health and sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LKEI00000000.1 Bac0000163 Pseudomonas fluorescens str. L111 "Pseudomonas fluorescens strain L111 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its primary energy source, and demonstrates an optimal growth temperature of 25.0°C. As an aerobic organism, P. fluorescens L111 requires oxygen for its metabolic processes, which aligns with its adaptability to diverse habitats.↵↵The versatility of Pseudomonas fluorescens strains, including L111, is well-documented in various environments, which may include soil, water, and surfaces where organic matter is present. The ability of this strain to thrive in multiple ecological niches underscores its potential role in nutrient cycling and organic matter decomposition. ↵↵Notably, P. fluorescens is often studied for its biocontrol properties, where it can inhibit the growth of plant pathogens, although specific interactions for strain L111 remain to be characterized. The ecological significance of P. fluorescens L111, combined with its metabolic capabilities, suggests it may play an important role in maintaining soil health and supporting plant growth in its natural habitats. This adaptability not only highlights the strain's ecological importance but also suggests its potential utility in agricultural applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_CP015637.1 Bac0000164 Pseudomonas fluorescens str. PfR 37 "Pseudomonas fluorescens str. PfR 37 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 25.0°C and is classified as a heterotroph, utilizing organic compounds as its energy source. As an aerobic organism, P. fluorescens str. PfR 37 requires oxygen for its metabolic processes, which is consistent with the general metabolic characteristics of the Pseudomonas genus.↵↵This strain is known to inhabit a variety of environments, suggesting a versatile ecological adaptability that may allow it to colonize diverse habitats, including soil, water, and plant surfaces. The ability to grow in multiple habitats highlights its potential role in biogeochemical cycles and interactions with other microorganisms in the ecosystem. ↵↵The presence of Pseudomonas fluorescens str. PfR 37 in various environments may also indicate its capacity to contribute to nutrient cycling and its potential utility in bioremediation efforts, where its metabolic capabilities can be harnessed to degrade environmental pollutants. Understanding the traits and ecological roles of this strain can provide valuable insights into the functional diversity of microbial communities and their interactions within different ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NVXX00000000.1 Bac0000165 Pseudomonas fluorescens str. Ps_40 "Pseudomonas fluorescens str. Ps_40 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a heterotrophic organism, Pseudomonas fluorescens str. Ps_40 utilizes organic compounds as its energy source, reflecting its adaptability to various ecological niches. Its aerobic nature requires oxygen for growth, positioning it within diverse habitats where oxygen is readily available.↵↵The ability of Pseudomonas fluorescens to occupy multiple habitats suggests a high degree of metabolic versatility, allowing it to thrive in environments ranging from soil and water to plant surfaces. This adaptability may facilitate its role in nutrient cycling and soil health, as heterotrophic bacteria often contribute to the decomposition of organic matter. Moreover, the strain's potential for bioremediation and biocontrol in agricultural settings aligns with the ecological functions typically attributed to Pseudomonas species. Overall, the unique combination of traits exhibited by Pseudomonas fluorescens str. Ps_40 highlights its ecological significance as a versatile and resilient microorganism in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LCYC00000000.1 Bac0000166 Pseudomonas fragi Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fragi 296 NQKL00000000.1 Bac0000167 Ectopseudomonas mendocina "Ectopseudomonas mendocina is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates aerobic metabolic capabilities as a heterotroph. This organism has been identified in various habitats, indicating its adaptability to diverse environmental conditions. As an aerobic microbe, E. mendocina requires oxygen for its growth and energy production, utilizing organic compounds as its primary energy source.↵↵The rod shape and single-cell arrangement of E. mendocina contribute to its ecological versatility, allowing it to occupy niches where competition for resources may vary. The ability to thrive in multiple habitats suggests that E. mendocina may play a role in various biogeochemical cycles, particularly in the degradation of organic matter. This trait positions the bacterium as a potential contributor to nutrient recycling processes in its environments.↵↵Understanding the ecological role of Ectopseudomonas mendocina could provide insights into its function in microbial communities, especially in relation to organic matter decomposition and nutrient cycling. Further investigations into its metabolic pathways and interactions within its ecological niches may reveal additional aspects of its biological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas mendocina Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 300 NZ_CP027657.1 Bac0000168 Ectopseudomonas oleovorans "Ectopseudomonas oleovorans is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and requires aerobic conditions for growth. This nonsporulating microbe thrives optimally at a temperature of 30.0°C, indicating its preference for mesophilic environments. The organism has been identified in various habitats, suggesting a broad ecological adaptability and potential versatility in utilizing different organic substrates for energy.↵↵As an aerobic bacterium, Ectopseudomonas oleovorans plays a significant role in environments where oxygen is present, contributing to the degradation of complex organic compounds. Its ability to metabolize a range of hydrocarbons, particularly in oil-contaminated sites, highlights its potential application in bioremediation efforts. By breaking down pollutants, this microorganism may enhance the recovery of ecosystems affected by hydrocarbon spills. ↵↵Overall, Ectopseudomonas oleovorans exemplifies the intricate relationships between microbial metabolism, environmental conditions, and the potential for biotechnological applications in the management of environmental contaminants." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas oleovorans Negative Rod Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 301 QASO00000000.1 Bac0000169 Ectopseudomonas oleovorans str. E1205 "Ectopseudomonas oleovorans str. E1205 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and relies on chemoheterotrophic metabolism for energy. This strain thrives optimally at a temperature of 30.0°C and is characterized by its nonsporulating nature, which suggests a reliance on vegetative growth under suitable environmental conditions rather than spore formation for survival. ↵↵The habitat of Ectopseudomonas oleovorans str. E1205 is diverse, indicating its adaptability to various ecological niches. Such flexibility may contribute to its potential role in nutrient cycling and organic matter decomposition in different environments. The ability of this organism to utilize a range of organic compounds in the presence of oxygen suggests that it may be involved in bioremediation processes, particularly in environments contaminated with hydrocarbons, where similar pseudomonads are often found. ↵↵Overall, the combination of its metabolic capabilities and habitat diversity positions Ectopseudomonas oleovorans str. E1205 as a potentially valuable organism for further study in biotechnological applications, particularly those aimed at environmental sustainability and pollutant degradation." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas oleovorans Negative Rod Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 301 QXDA00000000.1 Bac0000170 Pseudomonas putida str. 1290 "Pseudomonas putida strain 1290 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is characterized by its facultative anaerobic metabolism. This organism is a heterotroph, deriving its energy from organic compounds, which enables it to thrive in various environments, particularly in soil and wastewater habitats. Pseudomonas putida is nonsporulating, which indicates its reliance on favorable environmental conditions for survival and growth rather than forming spores for resilience during adverse conditions.↵↵The ability of Pseudomonas putida strain 1290 to utilize diverse organic substrates positions it as a significant player in bioremediation processes, where it can potentially degrade pollutants in contaminated environments. Moreover, its presence in wastewater suggests a role in nutrient cycling and organic matter decomposition, contributing to the ecological balance in these ecosystems. The strain's facultative anaerobic capability allows it to adapt to fluctuating oxygen levels, which can be particularly advantageous in environments where oxygen availability varies, such as in sediment layers of wastewater treatment systems. These traits underscore the ecological versatility of Pseudomonas putida strain 1290 and its potential applications in environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP039371.1 Bac0000171 Pseudomonas putida str. JBC17 "Pseudomonas putida strain JBC17 is a Gram-negative, rod-shaped bacterium that exists as single cells and is characterized as a nonsporulating, heterotrophic organism. This strain is facultatively anaerobic, allowing it to thrive in various environmental conditions, including the presence and absence of oxygen. P. putida JBC17 is commonly found in soil and wastewater habitats, reflecting its adaptability to nutrient-rich environments often impacted by organic waste.↵↵As a heterotroph, P. putida JBC17 utilizes organic compounds as its energy source, which enables it to play a significant role in the biogeochemical cycling of nutrients in its natural habitats. The ability to survive and flourish in both aerobic and anaerobic conditions suggests that this strain may possess metabolic versatility, allowing it to exploit a wide range of substrates in diverse ecological niches.↵↵The ecological significance of Pseudomonas putida JBC17 is underscored by its potential involvement in bioremediation processes, particularly in environments contaminated with organic pollutants. By degrading complex organic compounds, this strain contributes to soil health and wastewater treatment, highlighting its importance in environmental microbiology and sustainable practices. Further exploration of its metabolic pathways could provide insights into its functional roles in ecosystems affected by anthropogenic activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP029693.1 Bac0000172 Pseudomonas putida str. KF715 (=NBRC 110667) "Pseudomonas putida str. KF715 (also designated as NBRC 110667) is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain is a facultative heterotroph, indicating its ability to utilize organic compounds as energy sources in various environments. Pseudomonas putida str. KF715 is typically found in soil and wastewater habitats, where it plays a critical role in the degradation of organic pollutants, thus contributing to soil health and bioremediation processes.↵↵As a facultative anaerobe, this strain can adapt to both aerobic and anaerobic conditions, allowing it to thrive in diverse ecological niches where oxygen levels may fluctuate. Its metabolic versatility enhances its potential utility in biotechnological applications, particularly in waste treatment and environmental cleanup. By leveraging its ability to degrade a wide range of organic compounds, Pseudomonas putida str. KF715 exemplifies the ecological importance of soil-dwelling microbes in nutrient cycling and pollutant degradation. This adaptability not only underscores its role in environmental microbiology but also highlights its potential for use in innovative bioremediation strategies aimed at mitigating pollution in contaminated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_AP015030.1 Bac0000173 Pseudomonas putida "Pseudomonas putida is a gram-negative, rod-shaped bacterium that thrives in a wide range of environments, from soil to aquatic ecosystems. This microbe belongs to the category of thermophilic microorganisms, preferring temperatures between 25-37°C, and demonstrating chemotrophic metabolism, utilizing organic compounds as its energy source. Specifically, P. putida is a chemoheterotroph, meaning it uses chemical energy derived from organic compounds and consumes the same as its energy source. Its primary energy production occurs through aerobic respiration, utilizing oxygen as its electron acceptor. The bacterial shape of P. putida is typically rod-like, with a length of approximately 0.5-1.5 micrometers. Its body is composed of a gram-negative cell wall, featuring an outer membrane and a peptidoglycan layer, which provides structural support and protection against external threats. Additionally, P. putida is found in various body sites, including soil, water, and the human gut, where it plays a significant role in the degradation of organic matter. As an obligate aerobe, P. putida requires oxygen to survive and reproduce, making it an important component of aerobic ecosystems. Its ability to thrive in the presence of oxygen is crucial for its role in decomposing organic matter and recycling nutrients. Pseudomonas putida has been widely recognized for its versatile biotechnological applications, including its ability to degrade a wide range of pollutants, such as pesticides and industrial chemicals. It has also been used in the development of biofuels, antimicrobial agents, and bioremediation strategies. Furthermore, research on P. putida has provided valuable insights into its genetic makeup, allowing scientists to explore its potential in the development of novel antibiotics and vaccines. One notable characteristic of P. putida is its ability to produce a variety of enzymes that enable it to break down recalcitrant pollutants, making it a valuable tool in the phytoremediation of contaminated sites. Additionally, its remarkable antibiotic resistance capabilities and ability to form biofilms have made it a valuable model organism for studying the mechanisms of antibiotic resistance and biofilm formation." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NBWB00000000.1 Bac0000174 Pseudomonas putida str. DPA1 "Pseudomonas putida strain DPA1 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, P. putida DPA1 utilizes organic compounds as its energy source, making it well-suited for nutrient-rich habitats such as soil and wastewater. This strain does not undergo sporulation, which may indicate a reliance on stable environmental conditions for survival and growth.↵↵The ecological role of Pseudomonas putida DPA1 in soil and wastewater environments is significant, as it contributes to the degradation of organic pollutants, thereby aiding in bioremediation processes. Its metabolic versatility allows it to adapt to varying nutrient availability and oxygen levels, potentially facilitating its use in biotechnological applications aimed at environmental cleanup. This adaptability highlights the importance of Pseudomonas putida DPA1 in maintaining ecosystem health and its potential for innovative applications in waste management and environmental restoration." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NNBI00000000.1 Bac0000175 Pseudomonas putida str. JQ581 "Pseudomonas putida strain JQ581 is a Gram-negative, rod-shaped bacterium that typically exists as single cells, exhibiting a facultative anaerobic metabolism. This strain is a heterotroph, deriving its energy from organic compounds, which is indicative of its adaptation to nutrient-rich environments such as soil and wastewater. ↵↵Notably, Pseudomonas putida is recognized for its metabolic versatility, allowing it to thrive in various ecological niches where organic matter is present. The nonsporulating nature of this strain suggests a reliance on stable environmental conditions for survival, as it does not produce spores to endure unfavorable circumstances. The ability to grow in the presence of both oxygen and its absence highlights its adaptability to fluctuating oxygen levels commonly found in wastewater environments.↵↵Given its habitat and metabolic capabilities, Pseudomonas putida str. JQ581 may play a significant role in bioremediation processes, particularly in the degradation of pollutants in contaminated soils and wastewater systems. This ecological insight underlines the potential utility of this strain in environmental microbiology, particularly for applications aimed at enhancing the biodegradation of organic pollutants, thereby contributing to the sustainability of ecosystems affected by human activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP050951.1 Bac0000176 Ralstonia solanacearum str. P822 "Ralstonia solanacearum str. P822 is a Gram-negative bacterium commonly found in freshwater environments, soil, and water. This strain is part of a well-studied species known for its diverse ecological niches and adaptability to various aquatic and terrestrial habitats. The Gram-negative classification of R. solanacearum indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in fluctuating environments.↵↵The habitat preferences of R. solanacearum str. P822 suggest potential roles in nutrient cycling and microbial community dynamics within freshwater ecosystems and soil microbiomes. Its ability to thrive in these environments indicates a possible contribution to the degradation of organic materials and interaction with other microorganisms. Understanding the ecological role of this strain may provide insights into its interactions with plant systems, as members of the Ralstonia genus are noted for their associations with various plants.↵↵The isolation of R. solanacearum str. P822 from freshwater and soil signifies its potential involvement in freshwater ecosystems, where it may play a role in the maintenance of microbial diversity and health. Future research could illuminate its functional capacities and ecological contributions, fostering a greater understanding of its role in both freshwater and soil environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 PQWP00000000.1 Bac0000177 Ralstonia solanacearum "Ralstonia solanacearum is a Gram-negative bacterium primarily found in freshwater environments, soil, and water. This microbe is of significant interest due to its ecological versatility and resilience in various habitats. R. solanacearum is known for its ability to thrive in diverse environmental conditions, which may contribute to its survival and proliferation in both natural and anthropogenic ecosystems.↵↵The bacterium is characterized by its rod-shaped morphology and can exhibit motility through the presence of flagella, allowing it to navigate through its aqueous environments. Its metabolic versatility enables it to utilize a range of organic compounds, facilitating its adaptation to nutrient fluctuations in soil and freshwater habitats.↵↵R. solanacearum's presence in soil and water ecosystems suggests its potential role in nutrient cycling and microbial community dynamics. The bacterium may interact with other microorganisms, influencing microbial assemblages and contributing to the overall health and function of the ecosystems it inhabits. Additionally, its ability to persist in various environmental conditions highlights the importance of understanding its ecological role and potential implications for water quality and soil health. Further research into its interactions with other microbial populations and its physiological adaptations may provide deeper insights into its ecological significance and potential applications in bioremediation or agricultural contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 NZ_CP022760.1 Bac0000178 Pseudomonas sp. "Pseudomonas sp. is a Gram-negative, rod-shaped bacterium that thrives in diverse environments, including dental plaque, fresh and marine waters, and various soil habitats, such as the rhizosphere of common reeds and the phyllosphere. This microorganism exhibits an aerobic metabolism, necessitating oxygen for growth and survival. ↵↵Pseudomonas species are well-known for their metabolic versatility, enabling them to inhabit a wide range of ecological niches, from the surface of the tongue to nasal discharge. This adaptability suggests a potential role in nutrient cycling and biodegradation in their respective environments. For instance, their presence in dental plaque indicates a role in oral microbiology, while their occurrence in the rhizosphere highlights their potential contributions to plant health and soil ecology. ↵↵The ability of Pseudomonas sp. to inhabit both aquatic and terrestrial ecosystems underscores its ecological significance. Its prevalence in diverse habitats may facilitate interactions with a variety of organisms, further emphasizing its role in maintaining microbial diversity and ecosystem function. Understanding the specific interactions and contributions of Pseudomonas sp. in these environments can provide valuable insights into microbial ecology and the dynamics of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. negative Rod 1 aerobic dental plaque; Fresh water; Marine; nasal discharge; phyllosphere; rhizosphere; rhizosphere of common reeds; soils; tongue surface 306 PAJU00000000.1 Bac0000179 Stutzerimonas stutzeri "Stutzerimonas stutzeri is a Gram-negative, rod-shaped bacterium that typically exists in single-cell arrangements. This organism is classified as a heterotroph, indicating that it derives its energy from organic compounds rather than photosynthesis or inorganic materials. Stutzerimonas stutzeri is an aerobic microbe, requiring oxygen for its metabolic processes, which aligns with its adaptation to host-associated environments.↵↵The specific habitat of Stutzerimonas stutzeri suggests a symbiotic or commensal relationship with its host, although the nature of this interaction is not specified. The ability to thrive in host-associated niches may confer advantages in nutrient acquisition and metabolic versatility, allowing this bacterium to exploit various organic substrates present in its environment.↵↵As an aerobe, Stutzerimonas stutzeri likely plays a significant role in the microbial dynamics of its habitat, potentially influencing the overall metabolic activities and ecological balance within its host. Its presence in host-associated environments underscores the importance of understanding such microorganisms, as they may contribute to the biochemical processes that sustain their hosts and influence host health indirectly. Further research could elucidate the specific interactions and metabolic pathways involved, enhancing our understanding of the ecological roles of Stutzerimonas stutzeri within its niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 POUT00000000.1 Bac0000180 Stutzerimonas stutzeri str. 19 "Stutzerimonas stutzeri str. 19 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is classified as a heterotroph, utilizing organic compounds as its energy source. It is an aerobic microbe, requiring oxygen for its metabolic processes. Stutzerimonas stutzeri str. 19 is primarily found in host-associated habitats, indicating a potential relationship with various hosts, although the specifics of this association are not detailed.↵↵Given its aerobic nature and heterotrophic lifestyle, Stutzerimonas stutzeri str. 19 may play a role in the degradation of organic matter within its host environment, contributing to nutrient cycling. The bacterium's single-cell arrangement suggests adaptability to its ecological niche, potentially allowing it to efficiently exploit available resources in a host-associated habitat. This adaptability might also facilitate interactions with other microbial communities present in the same environment, underscoring the complexity of microbial dynamics in host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NFZU00000000.1 Bac0000181 Stutzerimonas decontaminans "Stutzerimonas decontaminans is a Gram-negative, rod-shaped bacterium that typically exists as single cells and relies on heterotrophic metabolism for energy. As an aerobic organism, S. decontaminans requires oxygen for its growth and survival, positioning it within environments that support such conditions. Its classification as host-associated suggests a potential niche within the microbiomes of various organisms, where it may play a role in bioremediation or decontamination processes.↵↵The ability of S. decontaminans to thrive in association with hosts indicates its potential utility in managing organic pollutants or toxins, possibly through the degradation of harmful substances. This capacity highlights the significance of such microbes in environmental microbiology, particularly in understanding how host-associated bacteria can contribute to ecosystem health and stability. Further research into the specific interactions and metabolic pathways of S. decontaminans could provide insights into its ecological roles and potential applications in bioremediation strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas decontaminans Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NZ_CP007510.1 Bac0000182 Stutzerimonas stutzeri str. ATCC 17588 = LMG 11199 "Stutzerimonas stutzeri str. ATCC 17588 (also known as LMG 11199) is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it relies on organic compounds as its primary energy source. It is an aerobic organism, requiring oxygen for its metabolic processes, which aligns with its habitat that is described as host-associated. ↵↵The ability of S. stutzeri to thrive in a host-associated environment suggests potential interactions with host organisms, possibly contributing to microbial communities or influencing host physiology. This ecological niche may reflect a role in nutrient cycling or symbiotic relationships within the host. Further studies could elucidate the specific interactions and functions of S. stutzeri in its natural habitat, providing insights into the broader ecological implications of its metabolic capabilities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NC_015740.1 Bac0000183 Stutzerimonas stutzeri str. Pseudomonas stutzeri 273 "Stutzerimonas stutzeri str. Pseudomonas stutzeri 273 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic microbe, it relies on organic compounds for its energy needs. This strain is classified as an aerobic organism, indicating that it requires oxygen for its metabolic processes. ↵↵The habitat of Stutzerimonas stutzeri str. Pseudomonas stutzeri 273 is notably associated with host environments, which suggests a potential relationship with various biological systems, possibly including plants or animals. The presence of this microbe in host-associated habitats implies a role in interactions that may influence the health or metabolic activities of the host.↵↵Understanding the ecological role of Stutzerimonas stutzeri str. Pseudomonas stutzeri 273 could provide insights into its contributions to nutrient cycling or its potential utility in biotechnological applications, particularly in environments where organic matter is abundant. Further exploration of its interactions within host environments may reveal novel functions that are essential for maintaining ecological balance or promoting host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NZ_CP015641.1 Bac0000184 Stutzerimonas stutzeri str. ST-9 "Stutzerimonas stutzeri str. ST-9 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is classified as a heterotroph, indicating that it utilizes organic compounds as its energy source. It requires oxygen for growth, categorizing it as an aerobe. Furthermore, S. stutzeri str. ST-9 is host-associated, suggesting an ecological relationship with a specific host organism or environment.↵↵The traits of S. stutzeri str. ST-9 imply an adaptability to aerobic environments where organic matter is available, whether through direct association with host organisms or in environments enriched by host-derived nutrients. Given its heterotrophic nature and aerobic respiration, this strain may play a role in nutrient cycling within its habitat, potentially influencing the microbiome dynamics of its host. Understanding the specific interactions and ecological roles of S. stutzeri str. ST-9 could provide insights into its contributions to microbial diversity and function in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 JXJL00000000.1 Bac0000185 Pseudomonas syringae str. Ps25 "Pseudomonas syringae strain Ps25 is a Gram-negative, rod-shaped bacterium that exists as single cells and exhibits heterotrophic metabolic capabilities. This microbe is classified as an aerobe, necessitating oxygen for its growth and energy production. Pseudomonas syringae strains, including Ps25, are known to inhabit diverse environments, suggesting a broad ecological adaptability.↵↵The rod shape of Pseudomonas syringae str. Ps25 is characteristic of many members of the Pseudomonas genus, which is often associated with various environmental niches, including soil and plant surfaces. As a heterotroph, Ps25 likely utilizes organic compounds from its surroundings to fulfill its nutritional requirements, which may contribute to its ability to thrive in multiple habitats. ↵↵The aerobic nature of this strain implies that it plays a role in aerobic biogeochemical cycles, particularly in environments rich in organic matter where oxygen is available. This trait may facilitate interactions with other microorganisms, contributing to complex microbial communities. Furthermore, the metabolic versatility of Pseudomonas syringae str. Ps25 could make it an important player in the decomposition of organic materials and nutrient cycling within its habitats. Thus, understanding this strain's ecological role may provide insights into microbial dynamics in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 NZ_CP034559.1 Bac0000186 Pseudomonas syringae "Pseudomonas syringae is a Gram-negative, rod-shaped bacterium that thrives in a wide range of temperatures, falling under the category of mesophilic organisms. It is a chemoheterotroph, meaning it derives its energy from the breakdown of organic compounds rather than through photosynthesis. P. syringae produces energy through a respiratory process, utilizing oxygen as its primary electron acceptor. When stained with Gram stain, P. syringae exhibits a characteristic Gram-negative reaction, with a thin peptidoglycan layer and an outer membrane composed of lipopolysaccharides and phospholipids. The bacterium's rod shape ranges from slender to stout, with some strains displaying a characteristic ""S"" shape. Despite its ability to grow on a variety of surfaces, P. syringae is typically found inhabiting plant surfaces, such as leaves, stems, and flowers. Its ability to colonize plant material allows it to participate in vital ecological processes, including decomposition and nutrient cycling. P. syringae is an obligate aerobe, requiring oxygen to survive and grow. It thrives in environments with moderate to high levels of oxygen and can be found in a range of ecosystems, from soil to aquatic environments. The bacterium's ability to utilize oxygen as its primary electron acceptor allows it to efficiently generate energy through respiration. One of the most notable aspects of Pseudomonas syringae is its ability to produce a range of secondary metabolites, including antibiotics, antifungals, and plant growth regulators. These compounds play a crucial role in the bacterium's survival, allowing it to outcompete other microorganisms for resources and space. Furthermore, P. syringae has been shown to be a key component of plant-microbe interactions, influencing plant growth and development through the production of signaling molecules. In addition to its ecological significance, P. syringae has also been implicated in several human diseases, including pneumonia and urinary tract infections. Its ability to produce virulence factors, such as lipopolysaccharides and exotoxins, allows it to evade the host immune system and cause disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 NZ_LT963409.1 Bac0000187 Pseudomonas syringae str. CEB003 "Pseudomonas syringae str. CEB003 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it utilizes organic compounds as its energy source and thrives in aerobic environments, indicating a requirement for oxygen in its metabolic processes. This strain has been identified in multiple habitats, suggesting a broad ecological versatility that allows it to adapt to various environmental conditions.↵↵The ability of Pseudomonas syringae str. CEB003 to occupy diverse habitats may be linked to its metabolic flexibility and potential interactions with organic substrates. This adaptability highlights the ecological significance of the strain within microbial communities, where it may play a role in nutrient cycling and the decomposition of organic matter. Understanding these traits can shed light on the ecological dynamics of Pseudomonas species and their contributions to ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 JPQT00000000.1 Bac0000188 Pseudomonas syringae str. GR12-2 "Pseudomonas syringae str. GR12-2 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a heterotroph, utilizing organic compounds as its energy source. This strain thrives in various habitats, showcasing its ecological versatility, and it is obligately aerobic, requiring oxygen for growth and metabolism.↵↵The ability of Pseudomonas syringae str. GR12-2 to adapt to multiple environments suggests a robust metabolic flexibility, which is a characteristic feature of the Pseudomonas genus. This adaptability may allow the bacterium to exploit a range of organic substrates, contributing to its survival in diverse ecological niches. As an aerobic organism, this strain may play a role in the cycling of nutrients in its habitats, potentially influencing microbial community dynamics and overall ecosystem function. ↵↵Further exploration of Pseudomonas syringae str. GR12-2's metabolic pathways and ecological interactions could provide insights into its role in biogeochemical cycles and its potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 LGSI00000000.1 Bac0000189 Pseudomonas savastanoi pv. glycinea "Pseudomonas savastanoi pv. glycinea is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microorganism is a heterotroph, meaning it derives its energy from organic compounds, and it requires aerobic conditions for growth, thriving in environments rich in oxygen. Its habitat is diverse, allowing it to adapt to various ecological niches.↵↵The rod shape and solitary arrangement of Pseudomonas savastanoi pv. glycinea facilitate motility and colonization in its environment, which may contribute to its survival in multiple habitats. Given its aerobic nature, this bacterium may play a role in the biogeochemical cycling of carbon and nitrogen in soils where organic matter is decomposed. The capability to utilize a range of organic substrates enhances its ecological versatility, potentially impacting plant health and soil dynamics.↵↵In summary, Pseudomonas savastanoi pv. glycinea exemplifies a highly adaptable organism that occupies a significant role in its ecological context, particularly in relation to organic matter degradation and nutrient cycling in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 318 RBOU00000000.1 Bac0000190 Pseudomonas savastanoi pv. phaseolicola "Pseudomonas savastanoi pv. phaseolicola is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, which allows it to thrive in diverse habitats. This microbe is classified as an aerobe, indicating that it requires oxygen for its metabolic processes.↵↵The versatility of P. savastanoi pv. phaseolicola in terms of habitat suggests a capacity for adaptation to various environmental conditions, which may facilitate its survival and proliferation in different ecological niches. This adaptability is particularly significant in the context of agricultural settings, where variations in soil composition and microbial interactions can influence its ecological dynamics.↵↵Given its traits, Pseudomonas savastanoi pv. phaseolicola exemplifies the resilience and metabolic flexibility characteristic of many Pseudomonas species, enabling it to occupy a range of ecological landscapes. Further research into its interactions with other microorganisms and its environmental resilience could provide insights into its role in microbial communities and potential applications in biocontrol or soil health management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 319 RBPO00000000.1 Bac0000191 Pseudomonas syringae pv. syringae "Pseudomonas syringae pv. syringae is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a heterotrophic aerobe. This bacterium is known to inhabit a variety of environments, demonstrating its adaptability to diverse habitats. As an aerobic organism, P. syringae pv. syringae requires oxygen for its metabolic processes, utilizing organic compounds as energy sources to support its growth and survival.↵↵The versatility of P. syringae pv. syringae in inhabiting multiple environments highlights its ecological significance. Its ability to thrive in various habitats may contribute to its interactions with plant hosts and the surrounding microbial communities. This adaptability not only underscores the resilience of the species but also suggests potential roles in nutrient cycling and plant-microbe interactions within ecosystems. Further investigation into its ecological functions could provide insights into its contributions to biodiversity and ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 321 RBUE00000000.1 Bac0000192 Ralstonia pickettii str. 52 "Ralstonia pickettii str. 52 is a Gram-negative, rod-shaped bacterium recognized for its heterotrophic metabolism, utilizing organic compounds as an energy source. This microbe is classified as an aerobic organism, requiring oxygen for growth and metabolic processes. Ralstonia pickettii str. 52 is found in a variety of habitats, indicative of its adaptability and ecological versatility. ↵↵The ability of R. pickettii str. 52 to thrive in multiple environments suggests a potential role in biogeochemical cycles, particularly in the degradation of organic materials where oxygen is available. Its heterotrophic nature allows it to exploit a range of organic substrates, which could contribute to nutrient cycling in various ecosystems. This adaptability to different habitats and its metabolic capabilities highlight the ecological significance of Ralstonia pickettii str. 52 in microbial communities. Further investigation into its specific environmental roles may reveal insights into its interactions within diverse ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii Negative Rod Yes 1 2 Aerobe Heterotroph - Heterotroph Mesophilic Multiple Free living 329 PKQE00000000.1 Bac0000193 Burkholderia glumae "Burkholderia glumae is a gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25°C to 37°C, placing it in the temperature preference category of mesophilic. It is a chemoheterotroph, meaning it derives energy from the breakdown of organic compounds and uses organic matter as its energy source. Burkholderia glumae produces energy through a process called aerobic respiration, which requires the presence of oxygen. In terms of its Gram stain, Burkholderia glumae is classified as a gram-negative bacterium, characterized by its thin peptidoglycan layer and outer membrane. The rod-shaped morphology of this microbe is typical of many gram-negative bacteria. Burkholderia glumae is found in various body sites, including soil, water, and plants. It has been isolated from diseased rice plants, where it causes bacterial panicle blight, a significant disease affecting rice production. As an obligate aerobe, Burkholderia glumae requires the presence of oxygen to survive and grow. It is also microaerophilic, preferring environments with low oxygen levels. Burkholderia glumae is a significant pathogen of rice, causing significant economic losses and food security concerns. The bacterium produces a toxin that disrupts plant cell wall formation, leading to blighted flowers and grains. Efforts to control the spread of this disease involve the use of resistant rice cultivars and integrated pest management strategies. In addition to its role as a plant pathogen, Burkholderia glumae has also been explored as a potential biocontrol agent. Its ability to produce antibiotics and siderophores makes it a promising candidate for ecological pest control. Further research is needed to fully understand the potential applications of this microbe." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia glumae Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Soil Nonsporulating Plant 337 NJFN00000000.2 Bac0000194 Xanthomonas translucens Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas translucens intercellular foliar tissues Plant 343 LNTA00000000.1 Bac0000195 Xanthomonas citri str. CFBP 7764 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri fruit surfaces; leaf surface; leaf surfaces 346 PPHE00000000.1 Bac0000196 Azotobacter chroococcum Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter chroococcum cotton root soil; rhizosphere soil 353 SJAD00000000.1 Bac0000197 Agrobacterium tumefaciens str. 1D1460 "Agrobacterium tumefaciens str. 1D1460 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an aerobic organism. This strain is part of a diverse group of bacteria known for their ability to inhabit multiple environments, highlighting their ecological versatility.↵↵The rod shape and Gram-negative staining indicate a complex cell wall structure, which may contribute to its adaptability in various habitats. The preference for aerobic conditions suggests that A. tumefaciens str. 1D1460 relies on oxygen for its metabolic processes, a trait that could influence its distribution in environments with varying oxygen availability.↵↵The ecological significance of A. tumefaciens str. 1D1460 may extend beyond its basic biological traits, as members of this species are commonly associated with plant interactions, where they can play a role in nutrient cycling and plant-microbe interactions. The ability to thrive in diverse habitats suggests that this strain may contribute to the microbial community dynamics in both soil and rhizosphere environments, potentially influencing plant health and soil fertility. Further studies could elucidate the specific roles and interactions of A. tumefaciens str. 1D1460 within its ecological niches." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP032926.1 Bac0000198 Agrobacterium tumefaciens str. 1D1609 "Agrobacterium tumefaciens str. 1D1609 is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats under aerobic conditions. Its optimal growth temperature is approximately 25.0°C, indicating a preference for moderate environmental temperatures. This strain is part of a broader genus known for its ability to interact with plant systems, particularly through mechanisms that facilitate gene transfer. ↵↵As a member of the Agrobacterium species, str. 1D1609 may possess traits that allow it to utilize diverse organic compounds in its environment, which can be advantageous in varied habitats. The aerobic nature of this bacterium suggests it relies on oxygen for its metabolic processes, a trait that influences its ecological niche and interactions with other microorganisms and plants. ↵↵Understanding the specific characteristics of Agrobacterium tumefaciens str. 1D1609 can inform its potential applications in biotechnology, particularly in plant genetic engineering. The ability to adapt to multiple habitats and thrive in aerobic conditions may enable this strain to play a significant role in soil ecosystems and plant-microbe interactions, highlighting its importance in ecological dynamics and potentially beneficial biotechnological applications." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP026927.1 Bac0000199 Agrobacterium tumefaciens str. CFBP5499 "Agrobacterium tumefaciens str. CFBP5499 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and exhibits optimal growth at a temperature of 25.0°C. This strain is part of a diverse group of microorganisms found in various habitats, indicating its ecological versatility. Agrobacterium species are well-known for their unique ability to transfer DNA to plant cells, a trait that has significant implications for plant biotechnology and genetic engineering.↵↵The presence of A. tumefaciens in multiple habitats suggests its adaptability to different environmental conditions, which may facilitate its interactions with a variety of host plants. This adaptability is critical for its survival and potential applications in agricultural practices. The strain's aerobic nature indicates a reliance on oxygen for metabolic processes, which may influence its distribution in soil and plant-associated environments.↵↵Notably, the optimal growth temperature of 25.0°C corresponds with typical environmental conditions found in temperate regions, further supporting its role in plant-associated ecosystems. Understanding the traits of A. tumefaciens str. CFBP5499 offers valuable insights into its ecological interactions and potential utility in biotechnological applications, particularly in developing sustainable agricultural practices. The versatility of this strain highlights its importance in the study of microbial ecology and plant-microbe interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP039893.1 Bac0000200 Agrobacterium tumefaciens str. CFBP7129 "Agrobacterium tumefaciens str. CFBP7129 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This strain is part of a larger group of bacteria found in diverse habitats, indicating its adaptability to various environmental conditions. ↵↵As a member of the Agrobacterium genus, this microbe is known for its role in plant-microbe interactions, particularly in the context of genetic transformation. Although specific pathogenicity traits are not provided, members of this genus are often associated with plant diseases, which may suggest a potential for interaction with plant systems.↵↵The ability of Agrobacterium tumefaciens str. CFBP7129 to survive in multiple habitats enhances its ecological versatility, allowing it to participate in various soil and rhizosphere processes. Its aerobic nature suggests that it plays a significant role in the cycling of nutrients in oxygen-rich environments. ↵↵This strain's adaptability and metabolic capabilities could provide insights into its potential applications in biotechnology, particularly in genetic engineering and bioremediation, where its interactions with plant systems may be harnessed for beneficial outcomes. Further studies could elucidate its specific ecological roles and contributions to soil health and plant growth." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP039925.1 Bac0000201 Agrobacterium tumefaciens "Agrobacterium tumefaciens is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites of plants, including roots, stems, and leaves, across multiple species. As a chemoheterotroph, Agrobacterium tumefaciens relies on organic compounds for energy and carbon, obtaining these nutrients from its host plant or surrounding environment. This microbe is also an obligate aerobe, requiring oxygen to survive and grow, which is reflected in its ability to form colonies on agar plates in the presence of oxygen. The rod-shaped morphology of Agrobacterium tumefaciens allows it to effectively interact with plant cells, facilitating the transfer of DNA and subsequent manipulation of plant metabolism. The mesophilic temperature preference of this microbe enables it to thrive in a wide range of environments, from soil to plant tissues. Agrobacterium tumefaciens can infect a broad range of plant species, including dicots and some monocots, leading to the formation of crown galls or hairy roots. This microbe has been extensively studied for its ability to transfer DNA to plant cells, a process that has been harnessed for genetic engineering and biotechnology applications, making it a valuable tool for the development of novel plant varieties and the production of recombinant proteins." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 MTKI00000000.1 Bac0000202 Agrobacterium tumefaciens str. 186 "Agrobacterium tumefaciens str. 186 is a rod-shaped, Gram-negative bacterium that thrives optimally at a temperature of 25.0°C. As an aerobe, this microbe requires oxygen for its metabolic processes, which is characteristic of its adaptability to various environmental conditions. A. tumefaciens is notably found in multiple habitats, indicating its ecological versatility and capacity to colonize diverse environments. ↵↵This strain is part of a larger group of Agrobacterium species known for their role in plant interactions, particularly in the context of plant transformation. While the specific interactions of A. tumefaciens str. 186 with plant hosts are not detailed here, the genus is widely recognized for its ability to transfer genetic material to plants, facilitating the study of plant genetics and biotechnology applications. ↵↵Given its broad habitat range and aerobic nature, A. tumefaciens str. 186 may serve as a model organism for understanding microbial ecology and interactions within various ecosystems. This adaptability underscores the potential for A. tumefaciens strains to contribute to soil health and nutrient cycling, which could be essential in agricultural settings. Thus, the ecological role of A. tumefaciens str. 186 may extend beyond plant transformation, highlighting its significance in promoting microbial diversity and interactions in various environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP042275.2 Bac0000203 Agrobacterium tumefaciens str. A6 "Agrobacterium tumefaciens str. A6 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe is classified as an aerobic organism, requiring oxygen for its metabolic processes. A. tumefaciens str. A6 exhibits a versatile habitat, being found in multiple environments, which may include soil and plant-associated niches. ↵↵The ability of A. tumefaciens to inhabit diverse ecological settings highlights its potential role in various biogeochemical cycles. Its aerobic nature suggests it may participate in aerobic decomposition processes, contributing to nutrient cycling in its habitats. Moreover, A. tumefaciens is well-known for its interactions with plant systems, particularly through its capacity to transfer DNA to host plants, which influences plant cell behavior. This trait emphasizes the bacterium's importance not only in the context of microbial ecology but also in agricultural biotechnology. The ecological implications of A. tumefaciens str. A6 extend beyond its basic traits, as its adaptability to various environments may facilitate its use in bioremediation and sustainable agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP033027.1 Bac0000204 Agrobacterium rhizogenes str. NCPPB2659 "Agrobacterium rhizogenes str. NCPPB2659 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic characteristics. This strain has an optimal growth temperature of 25.0 °C, which suggests it is well-adapted to moderate environmental conditions typically found in soil ecosystems. ↵↵As a member of the Agrobacterium genus, A. rhizogenes is recognized for its role in plant interactions, particularly in the transformation of plant cells. While specific pathogenicity traits are not detailed in the available data, the general behavior of Agrobacterium species indicates their potential involvement in plant-associated processes. ↵↵The aerobic nature of A. rhizogenes str. NCPPB2659 points to its reliance on oxygen for survival and growth, which may influence its ecological niche within soil microbiomes. This adaptation allows it to compete effectively with other microorganisms in well-oxygenated soil environments. The presence of this strain in terrestrial habitats highlights its potential contributions to soil health and plant development, possibly through mechanisms such as nutrient cycling or symbiotic relationships. Understanding the traits of A. rhizogenes str. NCPPB2659 could provide insights into its ecological roles and potential applications in agriculture and biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella rhizogenes Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial 359 NZ_CM004386.1 Bac0000205 Agrobacterium rhizogenes str. TPD7009 "Agrobacterium rhizogenes str. TPD7009 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic capabilities. This strain is optimally adapted to growth at a temperature of 25.0°C, which may reflect its natural habitat conditions. As a member of the Agrobacterium genus, it is known for its interactions with plant systems, particularly in relation to plant transformation and root development.↵↵The Gram-negative nature of A. rhizogenes str. TPD7009 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. The aerobic requirement suggests that oxygen is essential for its growth and metabolism, potentially influencing its ecological roles in soil environments where oxygen levels can vary. ↵↵Given its terrestrial habitat, A. rhizogenes str. TPD7009 may play significant roles in soil ecology, including nutrient cycling and interactions with plant roots. Its unique ability to engage with plant systems could facilitate beneficial relationships that enhance plant health and growth, underscoring the importance of this strain in agricultural and ecological contexts. Further studies may reveal more about its specific interactions and contributions to terrestrial ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella rhizogenes Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial 359 QDFR00000000.1 Bac0000206 Agrobacterium rhizogenes str. ATCC 15834 "Agrobacterium rhizogenes str. ATCC 15834 is a rod-shaped, Gram-negative bacterium that thrives in terrestrial habitats and exhibits an aerobic metabolism, requiring oxygen for growth. This strain is optimally active at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵As a member of the Agrobacterium genus, A. rhizogenes is recognized for its role in plant interactions, particularly in the context of root development. While the specific pathogenicity of this strain has not been detailed, members of this group are known for their ability to transfer genetic material to plant cells, which can lead to the formation of root galls. This trait has significant implications for agricultural biotechnology, particularly in the genetic modification of plants. ↵↵The ecological role of A. rhizogenes str. ATCC 15834 may extend beyond its interactions with plants, as its aerobic nature suggests a potential for involvement in soil nutrient cycling processes. By engaging in interactions with plant roots, this bacterium could contribute to the dynamics of microbial communities in terrestrial ecosystems, influencing plant health and soil fertility. Thus, while primarily recognized for its agricultural applications, A. rhizogenes str. ATCC 15834 may also play a critical role in broader ecological contexts." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella rhizogenes Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial 359 JFZP00000000.1 Bac0000207 Agrobacterium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. dry sugarcane straw; rhizosphere soil 361 DMZS00000000.1 Bac0000208 Bradyrhizobium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Pasture soil; soil 376 NZ_LN901633.1 Bac0000209 Sinorhizobium fredii str. NXT3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 380 NZ_CP024307.1 Bac0000210 Mesorhizobium loti str. DSM 2626 "Mesorhizobium loti strain DSM 2626 is a Gram-negative, rod-shaped bacterium that thrives in various habitats and exhibits aerobic metabolic characteristics. This species is notable for its role in nitrogen fixation, particularly in symbiosis with leguminous plants, which is essential for soil fertility and plant growth. As a member of the Rhizobiaceae family, M. loti possesses the ability to form root nodules on host plants, facilitating the conversion of atmospheric nitrogen into a bioavailable form that can be utilized by the plant, thus enhancing agricultural productivity.↵↵The aerobic nature of M. loti indicates that it requires oxygen for its growth and metabolic activities, which aligns with its ecological niches that typically provide sufficient oxygen levels. This adaptability to diverse environments suggests a versatile lifestyle, enabling it to colonize various soil types and possibly interact with multiple plant species across different ecosystems. ↵↵Understanding the traits of M. loti, especially its nitrogen-fixing abilities and aerobic metabolism, highlights its potential contributions to sustainable agriculture and soil health management. The interplay between this microbe and its plant hosts underscores the intricate relationships within ecosystems, where microbial activity can significantly influence plant health and soil nutrient dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 381 QGGH00000000.1 Bac0000211 Mesorhizobium loti str. NZP2042 "Mesorhizobium loti str. NZP2042 is a Gram-negative, rod-shaped bacterium classified within the family Rhizobiaceae, known for its aerobic metabolism and ability to thrive in various habitats. This strain is notable for its role in symbiotic nitrogen fixation, which is particularly relevant in the context of its interactions with legumes, contributing to soil fertility and ecosystem sustainability. ↵↵As an aerobic organism, Mesorhizobium loti str. NZP2042 requires oxygen for its metabolic processes, which aligns with its environmental adaptability. The versatility of its habitat suggests that this bacterium can colonize different ecological niches, potentially influencing local nitrogen cycles through its symbiotic relationships. ↵↵The presence of this strain in diverse environments highlights its ecological significance, as it not only supports plant health but also plays a critical role in agricultural systems and natural ecosystems where legumes are prevalent. Understanding the specific mechanisms of its nitrogen-fixing capabilities could provide insights into improving sustainable agricultural practices and promoting soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 381 LYTK00000000.1 Bac0000212 Sinorhizobium meliloti str. AC50a "Sinorhizobium meliloti strain AC50a is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic capabilities and thrives optimally at 25.0°C. This strain, a member of the Sinorhizobium genus, is known for its role in nitrogen fixation in symbiotic relationships with leguminous plants, particularly in various habitats, which enhances soil fertility. As an aerobic organism, AC50a requires oxygen for its growth and metabolic processes, which is consistent with its environmental adaptability.↵↵The versatility in habitat suggests that Sinorhizobium meliloti strain AC50a can occupy a range of ecological niches, potentially contributing to plant health and soil nutrient dynamics across diverse environments. This adaptability may also allow it to play a significant role in sustainable agriculture by promoting legume growth and enhancing nitrogen availability in soils, which is critical for maintaining soil health and optimizing crop yields. Thus, understanding the traits and behaviors of this strain can offer insights into its application in agricultural practices aimed at improving soil quality and reducing reliance on synthetic fertilizers." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 382 NJGD00000000.1 Bac0000213 Sinorhizobium meliloti "Sinorhizobium meliloti is a Gram-negative, rod-shaped bacterium that thrives in a temperature range of 20-30°C, classified as a mesophile. This microbe is a chemoheterotroph, utilizing organic compounds as its energy source, and produces energy through the process of fermentation. S. meliloti is a facultative anaerobe, able to grow both in the presence and absence of oxygen, and can tolerate low oxygen concentrations. During Gram staining, S. meliloti exhibits a negative reaction, meaning it does not retain the crystal violet stain, which allows it to be differentiated from Gram-positive bacteria. The rod-shaped morphology of S. meliloti is typical of many bacteria, with dimensions ranging from 0.5-1.5 μm in length and 0.3-0.5 μm in width. S. meliloti is found in soil, particularly in association with the roots of legume plants such as alfalfa (Medicago sativa) and sweet clover (Melilotus officinalis). In this symbiotic relationship, the bacterium fixes atmospheric nitrogen, making it available to the plant, in exchange for carbohydrates. S. meliloti plays a crucial role in the nitrogen cycle, converting atmospheric nitrogen (N2) into forms that can be utilized by plants. This process is essential for plant growth and development, particularly in agricultural systems where nitrogen is often a limiting factor. The bacterium's ability to thrive in soil and its association with legumes make it an important component of ecosystems. Furthermore, S. meliloti has been used as a model organism in scientific research, particularly in the fields of genetics, ecology, and biotechnology. Its unique ability to form symbiotic relationships with plants has also led to its use in biotechnological applications, such as the development of novel nitrogen-fixing systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 382 NZ_CP021821.1 Bac0000214 Rhizobium leguminosarum "Rhizobium leguminosarum is a species of soil-dwelling bacteria that thrives in mildly warm temperatures, typically between 20-30°C, falling under the temperature preference category of mesophilic (medium-loving). As a chemoheterotroph, it obtains its energy by breaking down organic compounds in the soil, rather than producing its own food through photosynthesis or chemosynthesis. Rhizobium leguminosarum produces energy through fermentation, specifically acetate fermentation, which involves the conversion of acetate to ethanol and acetyl-CoA. Gram-stained, Rhizobium leguminosarum is a rod-shaped bacterium, often with a curved or spiral morphology. As a soil-inhabiting microbe, it is ubiquitous in a wide range of soil types and environments, from agricultural fields to forests. Despite being a microbe, it is able to thrive in the presence of oxygen, classified as a facultative anaerobe, allowing it to tolerate both aerobic and anaerobic conditions. Rhizobium leguminosarum is renowned for its symbiotic relationship with legume plants, particularly peas, beans, and clover. It forms nodules on the plant roots, within which it converts atmospheric nitrogen into a form usable by the plant, earning it the nickname ""nitrogen fixer."" This mutualistic relationship not only benefits the plant but also the bacterium, which receives a carbon-rich source of nutrition." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP018236.1 Bac0000215 Rhizobium ruizarguesonis "Rhizobium ruizarguesonis is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and requires aerobic conditions for growth. This nonsporulating microbe is typically found in soil environments, where it plays a role in nutrient cycling and may contribute to soil health through its metabolic activities. ↵↵As a member of the Rhizobium genus, R. ruizarguesonis is likely involved in symbiotic relationships with leguminous plants, though the specific interactions and implications of these relationships are not detailed in the available data. The ability to thrive in aerobic habitats suggests a reliance on oxygen for its metabolic processes, which may influence its distribution and ecological niche within soil microbiomes.↵↵The presence of R. ruizarguesonis in soil highlights the importance of such bacteria in maintaining soil fertility and structure, as they may participate in the breakdown of organic matter and contribute to the overall microbial diversity essential for ecosystem functioning. Understanding the specific roles and interactions of R. ruizarguesonis within soil ecosystems could provide valuable insights into sustainable agricultural practices and the management of soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium ruizarguesonis Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 384 CP171850.1 Bac0000216 Rhizobium sp. WSM1325 "Rhizobium sp. WSM1325 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is strictly aerobic in its respiratory requirements. This microbe is nonsporulating, indicating it does not form spores as a means of survival under adverse conditions. The primary habitat of Rhizobium sp. WSM1325 is soil, where it likely engages in symbiotic relationships with leguminous plants, contributing to nitrogen fixation processes that enhance soil fertility.↵↵The ability to utilize organic compounds for energy while requiring oxygen for growth positions Rhizobium sp. WSM1325 as an important player in soil ecosystems, particularly in environments where organic matter decomposition occurs. The interactions of this bacterium with plant roots may stimulate plant growth and improve agricultural productivity, a trait that is characteristic of many members of the Rhizobium genus. ↵↵Furthermore, the ecological role of Rhizobium sp. WSM1325 underscores its potential utility in sustainable agriculture, particularly in enhancing nitrogen availability in soil systems, thus reducing the need for synthetic fertilizers. This aspect not only highlights the importance of Rhizobium sp. WSM1325 in nutrient cycling but also suggests its relevance in promoting environmentally friendly agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. WSM1325 Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 384 SBJG00000000.1 Bac0000217 Rhizobium leguminosarum str. ATCC 14479 "Rhizobium leguminosarum str. ATCC 14479 is a Gram-negative, rod-shaped bacterium that exists as single cells and is recognized for its role as a chemoheterotroph. This strain, part of the Rhizobium genus, is nonsporulating and thrives in aerobic conditions, making it well-suited for environments rich in oxygen. Its primary habitat is soil, where it interacts with plant roots, particularly legumes, facilitating nitrogen fixation in symbiotic relationships.↵↵As a chemoheterotroph, R. leguminosarum str. ATCC 14479 derives its energy from organic compounds, which it metabolizes through various biochemical pathways. Its nonsporulating nature indicates that it does not form spores as a means of survival under unfavorable conditions; instead, it relies on its metabolic capabilities to persist in the soil ecosystem.↵↵This strain's ability to form symbiotic associations with legumes not only aids in the nitrogen cycle but also contributes to soil fertility and health. The unique ecological insight lies in its potential role in sustainable agriculture, where enhancing the presence of R. leguminosarum in soil can improve nitrogen availability for crops, thus reducing the need for synthetic fertilizers. This interaction underscores the importance of soil microbiota in promoting plant health and ecosystem balance." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP030763.1 Bac0000218 Rhizobium leguminosarum str. Norway "Rhizobium leguminosarum str. Norway is a Gram-negative, rod-shaped bacterium that exists as single cells and functions as a chemoheterotroph, utilizing organic compounds as its energy source. This strain is nonsporulating and thrives in aerobic environments, primarily inhabiting soil ecosystems. ↵↵As a member of the Rhizobium genus, R. leguminosarum is known for its role in symbiotic nitrogen fixation, particularly in association with leguminous plants. While the specific symbiotic relationships of this strain are not detailed here, the broader genus is recognized for its ability to convert atmospheric nitrogen into a form usable by plants, thereby contributing to soil fertility and ecosystem health. ↵↵The ecological significance of R. leguminosarum str. Norway may extend beyond its nitrogen-fixing capabilities, as its presence in soil environments can influence microbial community dynamics and nutrient cycling processes. Understanding this strain's characteristics can provide insights into its potential applications in sustainable agriculture and soil management practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP025014.1 Bac0000219 Rhizobium leguminosarum bv. viciae str. UPM791 "Rhizobium leguminosarum bv. viciae str. UPM791 is a Gram-negative, rod-shaped bacterium that exists as single cells and is nonsporulating. As a chemoheterotroph, it derives its energy from organic compounds, making it well-suited to thrive in soil environments. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes.↵↵R. leguminosarum bv. viciae is known for its role in symbiotic nitrogen fixation with leguminous plants, particularly species such as peas and vetches. The ability to form symbiotic relationships with host plants not only enhances the nitrogen content of the soil but also contributes to sustainable agricultural practices by reducing the need for chemical fertilizers.↵↵The ecological significance of R. leguminosarum bv. viciae str. UPM791 extends beyond its nitrogen-fixing capabilities; its presence in soil ecosystems can influence microbial community dynamics, nutrient cycling, and plant health. By fostering a beneficial relationship with legumes, this strain plays a critical role in enhancing soil fertility and promoting biodiversity. Thus, understanding the characteristics and behavior of this microbe can inform agricultural strategies that aim to leverage natural processes for improved crop production and soil management." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 387 NZ_CP025507.1 Bac0000220 Rhizobium leguminosarum bv. viciae "Rhizobium leguminosarum bv. viciae is a Gram-negative, rod-shaped bacterium that exists primarily as single cells in soil environments. This microbe is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, a trait that facilitates its role in the nutrient cycling within soil ecosystems. As an aerobic organism, R. leguminosarum bv. viciae requires oxygen for its metabolic processes, which aligns with its ecological niche in well-aerated soils.↵↵Notably, this bacterium is nonsporulating, meaning it does not form spores, which may influence its survival strategies and interactions within the soil microbiome. The absence of sporulation suggests that R. leguminosarum bv. viciae relies on other mechanisms for resilience and persistence in its habitat, potentially including rapid growth rates or symbiotic relationships with leguminous plants.↵↵In terms of ecological significance, R. leguminosarum bv. viciae is known for its role in nitrogen fixation when associated with legume roots; however, the specific details of these interactions are not provided in the current data set. Hence, while its contributions to soil fertility and plant health are well-recognized, the precise dynamics of its ecological interactions remain an area for further investigation. Overall, R. leguminosarum bv. viciae exemplifies the complexity of soil microbiota and their essential functions in terrestrial ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 387 SJMI00000000.1 Bac0000221 Rhizobium sp. "Rhizobium sp. is a Gram-negative, nonsporulating bacterium that thrives in aerobic conditions, with an optimal growth temperature of 28.0°C. This microbe is commonly found in the rhizosphere, particularly in Borj Cedria soil, where it plays a crucial role in soil health and plant growth. Rhizobium species are well-known for their symbiotic relationships with leguminous plants, facilitating nitrogen fixation that enhances soil nitrogen availability, thereby promoting plant development.↵↵The presence of Rhizobium sp. in the rhizosphere underscores its importance in agricultural ecosystems, as it contributes to the sustainability of crop production through the enhancement of nitrogen content in the soil. This characteristic is particularly vital in natural and managed ecosystems, where nitrogen limitation can hinder plant growth. The ability of Rhizobium sp. to adapt to specific soil environments, such as those found in Borj Cedria, illustrates its potential for application in sustainable agricultural practices, particularly in areas where nitrogen fertilizers are not feasible or environmentally desirable. Thus, Rhizobium sp. serves as a model organism for studying plant-microbe interactions and sustainable agriculture." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. negative aerobic 28 Borj cedria soil; rhizosphere Nonsporulating 391 PEKW00000000.1 Bac0000222 Sinorhizobium fredii NGR234 Sinorhizobium fredii NGR234. Sinorhizobium fredii NGR234 NGR234 is unusual in that it is able to form nodules on the roots of more than 112 plants. This strain will provide information on the molecular mechanisms of broad host-range interactions. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii NGR234 Negative Bacilli Yes Aerobic Mesophilic HostAssociated 394 NC_012587.1 Bac0000223 Rhizobium phaseoli Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium phaseoli 396 NZ_CP013575.1 Bac0000224 Martinezella tropici Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella tropici 398 QMKK00000000.1 Bac0000225 Methylobacterium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. plant tissue; soil 409 BHEU00000000.1 Bac0000226 Methylomonas methanica str. R-45371 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas methanica Aerobic Mesophilic Marine-Soil Free living 421 LUUH00000000.1 Bac0000227 Novacetimonas hansenii Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Novacetimonas Novacetimonas hansenii 436 NKUD00000000.1 Bac0000228 Acetobacter pasteurianus str. SRCM100623 "Acetobacter pasteurianus str. SRCM100623 is a Gram-negative, nonsporulating bacterium that thrives as a chemoheterotroph, utilizing organic compounds for energy. This strain is optimally adapted to a temperature of 30.0°C, which aligns with its habitat as a dairy isolate, suggesting a significant role in the fermentation processes associated with dairy products. Acetobacter pasteurianus is known to require oxygen for growth, indicating its strict aerobic nature.↵↵The environmental niche of Acetobacter pasteurianus str. SRCM100623 in dairy products emphasizes its potential involvement in the production of acetic acid and other metabolites, which can influence the flavor and preservation of fermented dairy items. Its ability to thrive in oxygen-rich environments may facilitate interactions with other microbial communities present in dairy substrates, contributing to complex fermentation dynamics. This strain exemplifies the intricate relationships that exist within dairy ecosystems, where its metabolic activities can impact both the quality and safety of dairy products. Understanding the specific roles of such bacteria can provide insights into improving fermentation processes and enhancing the nutritional profiles of dairy foods." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 438 LYUD00000000.1 Bac0000229 Gluconobacter oxydans "Gluconobacter oxydans is a gram-negative, rod-shaped bacterium that belongs to the family Acetobacteraceae. It has a temperature preference category of Mesophilic, meaning it thrives in moderate temperatures ranging from 20°C to 40°C. As a chemoheterotroph, it derives its energy and organic compounds from the degradation of organic matter in its environment. Gluconobacter oxydans is capable of aerobic respiration, using oxygen as its primary energy source. This is evident in its oxygen preference, classified as an Obligate Aerobe, which means it requires oxygen to survive and grow. In terms of its metabolic properties, G. oxydans is a heterotroph, meaning it cannot produce its own food through photosynthesis or chemosynthesis. Instead, it relies on the breakdown and consumption of organic compounds. Despite this, it is capable of oxidizing carbohydrates, such as glucose, to produce gluconic acid, a key compound in various industrial applications. The bacterium's cell walls are typically Gram-negative, characterized by an outer membrane and a thin peptidoglycan layer. Its rod-shaped morphology allows it to adapt to a variety of environments, from soil to aquatic ecosystems. In terms of its distribution, Gluconobacter oxydans has been isolated from diverse environments, including soil, plants, and water. Its ability to thrive in a range of settings is likely due to its adaptability and ability to exploit a variety of organic matter sources. Gluconobacter oxydans is a significant microbe in the production of gluconic acid, which is used in various applications, including food preservation, pharmaceuticals, and biotechnology. Its ability to produce this valuable compound has led to extensive research into its metabolic pathways and potential industrial applications. As a result, G. oxydans has become a model organism for understanding the mechanisms of bacterial metabolism and developing novel biotechnological strategies." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter oxydans Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living Singles 442 LHZG00000000.1 Bac0000230 Legionella pneumophila "Legionella pneumophila is a gram-negative, rod-shaped bacterium classified as a mesophile, thriving optimally at temperatures between 25°C and 45°C. It is a chemoheterotroph, deriving its energy from organic compounds, and is known to be a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen. This microbe primarily colonizes aquatic environments, particularly warm water sources such as hot tubs, cooling towers, and air conditioning units, which can serve as reservoirs for the bacteria. In addition to these environments, Legionella pneumophila can be found in biofilms and within protozoa, enhancing its survival and virulence. In terms of pathogenicity, L. pneumophila is notorious for causing Legionnaires' disease, a severe form of pneumonia characterized by high fever, chills, cough, and muscle aches. It is transmitted through inhalation of aerosolized water droplets containing the bacteria. The microbe can enter the human respiratory system and invade alveolar macrophages, where it replicates intracellularly, often leading to immune evasion and inflammatory responses. Further complicating control measures, L. pneumophila is resistant to routine disinfection methods, making outbreaks a challenge in both public and healthcare settings. The bacterium can survive within a range of environmental conditions, demonstrating its adaptability. Moreover, its role in biofilm formation creates a protective niche, enabling it to persist in water systems. Studies continue to investigate the mechanisms of its virulence, environmental persistence, and strategies for reducing its prevalence in man-made water systems to prevent future outbreaks." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 PQWZ00000000.1 Bac0000231 Legionella bozemanae Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella bozemanae microaerophile 447 LNXU00000000.1 Bac0000232 Legionella hackeliae str. ATCC35250 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella hackeliae 449 NZ_LN681225.1 Bac0000233 Legionella feeleii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella feeleii 453 UASS00000000.1 Bac0000234 Legionella israelensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella israelensis 454 NZ_CP038254.1 Bac0000235 Legionella jordanis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella jordanis microaerophile sewage 456 LNYJ00000000.1 Bac0000236 Legionella rubrilucens Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella rubrilucens microaerophile active sludge basin; waste water system 458 LNYT00000000.1 Bac0000237 Legionella steigerwaltii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella steigerwaltii microaerophile 460 UGOY00000000.1 Bac0000238 Fluoribacter dumoffii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Fluoribacter Fluoribacter dumoffii 463 UGGT00000000.1 Bac0000239 Acinetobacter baumannii str. CIAT758 "Acinetobacter baumannii str. CIAT758 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotrophic aerobe, indicating its reliance on organic compounds for energy while requiring oxygen for metabolic processes. The optimal growth temperature for A. baumannii str. CIAT758 is 37.0°C, which aligns with the temperature typically found in mammalian hosts, suggesting a potential adaptation to environments associated with warm-blooded organisms.↵↵The ecological versatility of A. baumannii str. CIAT758 is underscored by its classification as a habitat generalist, as it can thrive in multiple environments. This adaptability may contribute to its survival in diverse ecological niches, ranging from soil and water to clinical settings. The ability to occupy various habitats, combined with its aerobic lifestyle, allows A. baumannii str. CIAT758 to exploit a wide range of organic substrates, enhancing its ecological resilience and competitive advantage in fluctuating environments.↵↵Overall, the traits of Acinetobacter baumannii str. CIAT758 suggest that it is well-equipped to thrive in diverse habitats, potentially influencing microbial community dynamics and nutrient cycling in its various ecological niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP038503.1 Bac0000240 Acinetobacter baumannii str. DMC-32a "Acinetobacter baumannii str. DMC-32a is a Gram-negative, rod-shaped bacterium that typically occurs as single cells. This strain thrives at an optimal temperature of 37.0°C and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. As an aerobe, it requires oxygen for its metabolic processes, which allows it to grow in diverse habitats.↵↵The adaptability of A. baumannii str. DMC-32a to various environments may contribute to its widespread presence in both natural and artificial settings, highlighting its potential role in microbial communities. Its ability to thrive under aerobic conditions at physiological temperatures suggests that it could be involved in nutrient cycling and interactions with other microorganisms in these ecosystems. This bacterium's metabolic capabilities and habitat flexibility underscore its ecological importance, potentially influencing carbon and nitrogen cycles in environments where it is present." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 SRZJ00000000.2 Bac0000241 Acinetobacter baumannii str. MRSN15313 "Acinetobacter baumannii str. MRSN15313 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic respiration. This strain thrives optimally at a temperature of 37.0°C, suggesting a preference for conditions that may be encountered in warm-blooded hosts or environments closely associated with them. As a chemoheterotroph, A. baumannii str. MRSN15313 derives its energy through the utilization of organic compounds, indicating its adaptability to various nutrient-rich habitats.↵↵The ecological versatility of A. baumannii is underscored by its presence in multiple habitats, which may include both natural and anthropogenic environments. This adaptability could play a significant role in the bacterium's ability to survive under diverse conditions, contributing to its prominence in clinical settings as well as its potential interactions within broader microbial communities. The ability to thrive in varying environments highlights the ecological significance of A. baumannii str. MRSN15313, as it may serve as a model organism for studying microbial resilience and adaptability in fluctuating ecological niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP033872.1 Bac0000242 Acinetobacter pittii "Acinetobacter pittii is a Gram-negative, rod-shaped bacterium that thrives in moderate-temperature environments and is classified as a chemoheterotroph. This organism is predominantly found in various body sites, including the skin, respiratory tract, and gastrointestinal tract, making it a common inhabitant of human microbiota. As a facultative anaerobe, A. pittii demonstrates versatility in oxygen utilization, enabling it to survive in both aerobic and anaerobic environments. The Gram-negative characteristic of A. pittii signifies its cell wall structure, which comprises a thin peptidoglycan layer sandwiched between two membranes. This unique structure not only influences its staining characteristics but also contributes to its pathogenic potential, as it can resist certain antibiotics. The rod shape of A. pittii is significant for its motility and ability to form biofilms, enhancing its survival in various environments and on surfaces, particularly in healthcare settings. As a chemoheterotroph, A. pittii relies on organic compounds as its primary source of carbon and energy, utilizing a range of nutrients in its environment. Its facultative anaerobic capabilities allow it to adapt to fluctuating oxygen levels, which is particularly advantageous in human tissues where oxygen availability may vary.Acinetobacter pittii is notable for its emerging role in human infections, particularly in immunocompromised patients. It has been increasingly associated with nosocomial infections, including ventilator-associated pneumonia and bloodstream infections. Its ability to acquire resistance to multiple antibiotics has made A. pittii a significant concern in clinical microbiology, highlighting the need for ongoing surveillance and innovative treatment strategies. Furthermore, its genetic adaptability makes it an interesting subject for studies in microbial evolution and resistance mechanisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 UFIV00000000.1 Bac0000243 Acinetobacter baumannii "Acinetobacter baumannii is classified as a mesophile, a chemoheterotroph, capable of energy production through aerobic respiration, a Gram-negative bacterium, typically appearing as a coccobacillus, found across various body sites such as the skin, respiratory tract, and urinary tract, and is categorized as a facultative anaerobe. This opportunistic pathogen thrives optimally at moderate temperatures, making it well-suited for survival in human hosts. As a chemoheterotroph, A. baumannii derives its energy from organic compounds, utilizing a variety of carbon sources, which contributes to its adaptability in diverse environments. Its Gram-negative nature is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can elicit strong immune responses. The coccobacillus shape allows for efficient colonization and biofilm formation, facilitating its persistence in hospital settings. A. baumannii is commonly found colonizing skin and mucosal surfaces, particularly in critically ill patients. Its ability to survive in harsh conditions, including desiccation and the presence of disinfectants, enhances its transmission in healthcare environments, leading to outbreaks in intensive care units and among patients with compromised immune systems.Furthermore, this microbe poses a significant challenge in clinical settings due to its remarkable antibiotic resistance, often exhibiting multi-drug resistance profiles that complicate treatment options. Research into its genomic features has revealed mechanisms that confer resistance, allowing it to thrive despite aggressive antimicrobial therapies. Understanding A. baumannii’s adaptability and resistance mechanisms is crucial for developing effective infection control strategies and treatment modalities, especially as it continues to emerge as a formidable nosocomial pathogen." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 LYKI00000000.1 Bac0000244 Acinetobacter baumannii str. ACN21 "Acinetobacter baumannii str. ACN21 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits an optimal growth temperature of 37.0°C and is classified as a chemoheterotroph, deriving its energy from organic compounds. As an obligate aerobe, A. baumannii str. ACN21 requires oxygen for its metabolic processes, which may influence its distribution in various habitats.↵↵The organism's ability to thrive in multiple environments suggests a versatile ecological adaptability, potentially allowing it to inhabit diverse niches, including clinical settings and natural ecosystems. This adaptability may be linked to its metabolic flexibility, which enables it to utilize a variety of organic substrates. The presence of A. baumannii in various habitats underscores its ecological resilience and highlights the importance of understanding its environmental interactions, particularly in the context of microbial community dynamics and nutrient cycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP038645.1 Bac0000245 Acinetobacter baumannii str. NUBRI-A "Acinetobacter baumannii str. NUBRI-A is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells and thrives optimally at a temperature of 37.0 °C. This strain exhibits chemoheterotrophic metabolic capabilities, utilizing organic compounds as its energy source. A. baumannii is classified as an aerobic organism, requiring oxygen for growth and metabolism. ↵↵The habitat of A. baumannii str. NUBRI-A is characterized by its versatility, as it can be found in multiple environments, which may include soil, water, and various surfaces within healthcare settings. This adaptability underscores its potential resilience in diverse ecological niches. ↵↵The ability to thrive in varying habitats while maintaining an aerobic lifestyle highlights the organism's metabolic flexibility and ecological importance. Understanding the specific conditions and environments where A. baumannii str. NUBRI-A proliferates could provide insights into its role in microbial communities and its interactions with other organisms. This adaptability may also influence its behavior in clinical settings, where it can contribute to the dynamics of microbial populations." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 SOYV00000000.1 Bac0000246 Acinetobacter calcoaceticus str. JUb89 "Acinetobacter calcoaceticus str. JUb89 is a Gram-negative bacterium that thrives in soil environments as an aerobic organism. This strain belongs to a genus known for its metabolic versatility, which enables it to occupy diverse ecological niches. The ability of A. calcoaceticus to utilize a variety of organic compounds as carbon sources suggests a role in the degradation of complex organic materials within its soil habitat.↵↵As a member of the Acinetobacter genus, A. calcoaceticus str. JUb89 is likely involved in important biogeochemical processes, including nutrient cycling and organic matter decomposition. Its aerobic nature indicates that it requires oxygen for growth and metabolism, which aligns with its ecological role in well-aerated soil environments where oxygen is readily available. ↵↵Research on A. calcoaceticus and related strains has highlighted their potential in bioremediation, particularly in the breakdown of pollutants due to their metabolic capabilities. The ecological insight offered by A. calcoaceticus str. JUb89 underscores the bacterium's potential contributions to soil health and ecosystem functioning, particularly in maintaining the balance of microbial communities and enhancing soil quality through organic matter turnover." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus Negative Aerobe soil; soil environment 471 SLVJ00000000.1 Bac0000247 Acinetobacter calcoaceticus "Acinetobacter calcoaceticus is a Gram-negative, rod-shaped bacterium that thrives in a variety of environments. It is categorized as a psychrophilic, meaning it prefers temperatures between 10-30°C, making it well-suited for cold environments such as soil, water, and medical settings. This microbe is a chemoheterotroph, relying on organic compounds for its energy source, and produces energy through respiration. The Gram stain analysis reveals that A. calcoaceticus is characteristic of Gram-negative bacteria, possessing a thin peptidoglycan layer and an outer membrane. Its rod-shaped morphology allows it to multiply and adapt to different environments. This bacteria is commonly found on human skin, in the respiratory tract, and in the gastrointestinal tract, making it a ubiquitous microbe. A. calcoaceticus is an obligate aerobe, requiring the presence of oxygen for growth and metabolism. It is sensitive to low oxygen levels and cannot survive in anoxic environments. In contrast, some bacteria can thrive in low-oxygen conditions or even anaerobic environments. Despite its ability to adapt to various environments, A. calcoaceticus is primarily found in soil, water, and clinical settings. It is often associated with hospital-acquired infections, particularly in patients with compromised immune systems. Notably, A. calcoaceticus has been recognized as a multidrug-resistant pathogen, contributing to the challenge of treating associated infections. One critical role A. calcoaceticus plays is as a biosensor for environmental pollutants. Its ability to degrade certain pollutants, such as polycyclic aromatic hydrocarbons (PAHs), makes it a valuable tool for monitoring environmental contamination. Furthermore, its genetic makeup has shown promise in the development of novel enzymes and bioproducts, highlighting the significant potential of this microbe in biotechnological applications. In summary, A. calcoaceticus is a versatile, opportunistic microbe with a complex range of characteristics. Its ability to thrive in diverse environments, degrade pollutants, and produce novel bioproducts make it a fascinating subject for ongoing research and exploration." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 471 NZ_LT605060.1 Bac0000248 Acinetobacter calcoaceticus str. EGD_AQ_BF14 "Acinetobacter calcoaceticus strain EGD_AQ_BF14 is a Gram-negative bacterium that thrives in soil environments and exhibits aerobic metabolic activity. This strain is part of a genus known for its environmental versatility, particularly in nutrient-rich habitats such as soil, where it plays a role in organic matter decomposition and nutrient cycling. As an aerobe, A. calcoaceticus requires oxygen for its growth and metabolic processes, which aligns with its habitat preference where oxygen availability is typically abundant.↵↵Acinetobacter species, including this strain, are recognized for their environmental resilience and ability to adapt to various ecological niches. The presence of A. calcoaceticus in soil suggests it may contribute to microbial diversity and play a role in soil health by participating in biogeochemical processes. Additionally, its ability to thrive in aerobic conditions may influence the microbial community structure within its habitat, potentially affecting the dynamics of nutrient utilization and organic matter breakdown. Understanding the ecological roles of strains like EGD_AQ_BF14 can provide insights into soil microbiomes and their contributions to ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus Negative Aerobe soil; soil environment 471 LZRL00000000.1 Bac0000249 Acinetobacter sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. activated sludge; alkaline or hyper-saline environments; aquaculture water; dry surfaces; high altitude lakes; lower respiratory tract; oil-contaminated soil; organic solvents; rhizosphere; sewage sludge; soil; sputum; wastewater treatment plants 472 NZLS00000000.1 Bac0000250 Moraxella bovis "Moraxella bovis is a Gram-negative bacterium characterized by its rod-shaped morphology. It belongs to the family Moraxellaceae and is primarily known for its association with bovine species, where it has been identified as a significant microbe in veterinary contexts. As a Gram-negative organism, Moraxella bovis possesses a thin peptidoglycan layer and an outer membrane that contains lipopolysaccharides, features that contribute to its structural integrity and may play a role in its interactions with host organisms.↵↵This bacterium is notable for its potential involvement in various conditions affecting cattle, although the specific pathogenic mechanisms and ecological roles are still subjects of ongoing research. The presence of Moraxella bovis in the bovine microbiome suggests that it may have specific adaptations to the ruminant gastrointestinal tract, contributing to the complex interplay of microbes essential for digestion and nutrient absorption in these animals.↵↵Further investigation into Moraxella bovis may reveal insights into its interactions within the bovine microbiome and its potential roles in health and disease states. Understanding this bacterium's behavior and ecology could provide valuable information for improving animal health management practices and enhancing the productivity of livestock systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella bovis negative 476 NZ_CP030241.1 Bac0000251 Moraxella nonliquefaciens Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella nonliquefaciens 478 LXTW00000000.1 Bac0000252 Moraxella sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella sp. 479 RBKE00000000.1 Bac0000253 Moraxella catarrhalis "Moraxella catarrhalis is a gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25-40°C, classified as psychrotolerant. As a heterotroph, it derives its energy from the breakdown of organic compounds, specifically utilizing aerobic respiration as its primary means of energy production. This process involves the conversion of glucose into ATP through the citric acid cycle and oxidative phosphorylation. M. catarrhalis is characterized by its Gram-staining properties, which indicate that it has a thin peptidoglycan layer. Its rod-shaped morphology allows it to thrive in a variety of environments, including the human respiratory tract, where it can be found colonizing the nasal cavity and sinuses. In addition, it has been detected in other body sites such as the throat, ear, and skin. As an obligate aerobe, M. catarrhalis requires the presence of oxygen to survive and grow. This is reflected in its ability to thrive in the oxygen-rich environment of the human respiratory tract, where it can be found coexisting with other microorganisms. Its ability to adapt to different oxygen levels allows it to colonize diverse niches, making it a successful pathogen. Despite its ability to thrive in a variety of environments, M. catarrhalis is often associated with respiratory tract infections, particularly in individuals with compromised immune systems. Its ability to adhere to epithelial cells and produce exotoxins contributes to its pathogenic potential. Furthermore, its ability to resist the host's immune response through the production of outer membrane vesicles and adhesins enables it to evade detection and persist in the host. In conclusion, Moraxella catarrhalis is a unique microbe that has evolved to thrive in the human respiratory tract, exploiting its ability to adapt to different temperatures, oxygen levels, and metabolic conditions. Its ability to adhere to epithelial cells, produce exotoxins, and resist the host's immune response make it a successful pathogen. While it is often associated with respiratory tract infections, its ability to colonize diverse niches and resist immune detection make it a formidable opponent." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella catarrhalis Negative Cocci No 1 2 Aerobe Mesophilic HostAssociated Free living 480 LXHT00000000.1 Bac0000254 Neisseria flavescens "Neisseria flavescens is a gram-negative, oxidase-positive bacterium that thrives in a mesophilic temperature range, preferring temperatures between 25°C and 37°C. As a chemoheterotroph, it relies on organic compounds as its primary source of energy and carbon, broken down through a respiratory process. Specifically, it produces energy through the process of aerobic respiration, utilizing oxygen as its electron acceptor. The bacterium's Gram stain characteristics denote its gram-negative status, meaning that the outer membrane lacks the peptidoglycan layer, composed of a lipid bilayer and lipopolysaccharides. In terms of shape, Neisseria flavescens is a curved, rod-shaped bacterium, often appearing as a diplococcus, with two coccoid cells connected by a thin bridge. Neisseria flavescens has been isolated from various body sites, including the oropharynx, Nasopharynx, and throat, in humans and other primates. It is an obligate aerobe, requiring the presence of oxygen to survive and grow, and is therefore typically found in environments with adequate oxygen levels. In addition to its physiological characteristics, Neisseria flavescens is an opportunistic pathogen, capable of causing infections in immunocompromised individuals, particularly in those with compromised respiratory function. It is also known to coexist with other commensal flora in the human respiratory tract, highlighting its adaptability to diverse environmental conditions. When growing in culture, Neisseria flavescens displays a distinctive yellowish or golden pigmentation, which is thought to be due to the presence of carotenoid pigments, such as lycopene. Its ability to form a biofilm, a complex community of microorganisms attached to a surface, has been implicated in the pathogenesis of respiratory infections. Overall, Neisseria flavescens is an important species in the human microbiome, highlighting the complex interplay between microorganisms and their host environment." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria flavescens Negative Aerobe duodenum 484 LAEH00000000.1 Bac0000255 Neisseria gonorrhoeae "Neisseria gonorrhoeae is a type of bacteria that thrives in temperatures between 32°C and 40°C, making it a mesophilic organism. It is a heterotroph, utilizing a combination of carbohydrates and amino acids as its primary energy source. This microbe produces energy through a process called respiration, which involves the breakdown of glucose and other organic compounds in the presence of oxygen. When stained with a Gram stain, N. gonorrhoeae appears as a Gram-negative bacterium, characterized by an outer membrane containing lipopolysaccharides and lipids. In terms of shape, this bacterium is a diplococcus, meaning it forms pairs of spherical cells. N. gonorrhoeae can be found in various body sites, including the genital and urinary tracts of humans, as well as the throat and eyes. It is an obligate aerobe, requiring the presence of oxygen to survive. This microbe is able to tolerate a wide range of oxygen concentrations, making it a versatile inhabitant of the human body. One of the most significant aspects of N. gonorrhoeae is its ability to cause serious infections, particularly in the genital and urinary tracts. Gonorrhea, the sexually transmitted disease caused by this bacterium, can lead to severe consequences if left untreated, including infertility, pelvic inflammatory disease, and disseminated infection. The World Health Organization (WHO) estimates that there are over 80 million cases of gonorrhea worldwide each year, highlighting the significant public health burden of this microbe. Furthermore, N. gonorrhoeae has developed resistance to many antibiotics, making the treatment of gonorrhea increasingly challenging. This bacterium's ability to adapt to changing environments and develop resistance to antimicrobial agents further underscores the importance of continued research and public health efforts to combat this significant public health threat. Overall, Neisseria gonorrhoeae is a significant microbe that requires careful management and attention to prevent the spread of disease and mitigate its impact on human health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SURC00000000.1 Bac0000256 Neisseria lactamica str. Y92-1009 "Neisseria lactamica str. Y92-1009 is a Gram-negative cocci that exhibits a nonsporulating phenotype and is characterized as a chemoheterotroph, utilizing organic compounds for energy. This strain thrives optimally at a temperature of 35.0°C, suggesting an adaptation to warm-blooded hosts or environments that provide stable, moderate thermal conditions. ↵↵The genus Neisseria includes species commonly associated with human mucosal surfaces, and N. lactamica is typically found in the nasopharynx of humans, indicating its potential role in the microbiota of the upper respiratory tract. This strain likely plays a part in the complex interactions within its habitat, contributing to the microbial diversity and possibly influencing the dynamics of other microbial inhabitants.↵↵The ability of N. lactamica to thrive in multiple habitats suggests a versatile adaptability, which may allow it to occupy various niches within the human body or other environments. Understanding the ecological role of N. lactamica str. Y92-1009 could provide insights into its interactions with other microorganisms and its potential contributions to the health of the host organism." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria lactamica Negative Cocci No 1 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 486 NZ_CP019894.1 Bac0000257 Neisseria lactamica "Neisseria lactamica is a Gram-negative, diplococci-shaped bacterium that thrives at human body temperature (37°C), categorizing it as a mesophilic microbe. It is a chemoheterotroph, deriving its carbon and energy from organic compounds, and is predominantly found in the nasopharynx of humans but can also inhabit other mucosal surfaces, including the throat and respiratory tract. This organism acts as a facultative anaerobe, which means it can grow in both aerobic and anaerobic environments, thus enhancing its resilience in various body sites with differing oxygen levels. As a member of the Neisseriaceae family, N. lactamica is closely related to Neisseria meningitidis and Neisseria gonorrhoeae, but it is typically non-pathogenic and is considered part of the normal flora. Its presence in the nasopharynx can even provide a competitive advantage against more virulent strains, possibly due to its ability to occupy ecological niches that would otherwise be available to pathogenic bacteria. The capacity of N. lactamica to undergo genetic transformation and horizontal gene transfer presents a fascinating aspect of its biology. It can acquire genetic material from its environment, which may include antibiotic resistance genes, thus serving as a potential reservoir for such traits in other Neisseria species. This bacterium plays a vital role in understanding the dynamics of microbial ecosystems within the human body and may contribute to elucidating the mechanisms of bacterial persistence and pathogenicity in related species. Additionally, studies have suggested that N. lactamica may influence the immune system, possibly impacting responses to other pathogens." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria lactamica Negative Cocci No 1 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 486 UGRO00000000.1 Bac0000258 Neisseria meningitidis str. DuyDNT "Neisseria meningitidis str. DuyDNT is a Gram-negative coccoid bacterium that typically exists in pairs, reflecting its characteristic cell arrangement. This strain thrives optimally at a temperature of 35.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. As a host-associated microbe, N. meningitidis str. DuyDNT is primarily found in environments that are closely linked to its host organisms, where it may interact with various physiological systems.↵↵The organism's specific habitat suggests a potential role in host-microbe interactions, which could be crucial for understanding its biological behavior and ecological niche. The survival and growth at an optimal temperature of 35.0°C align with typical mammalian body temperatures, indicating a close relationship with warm-blooded hosts. This trait may facilitate its adaptation to the host environment, allowing it to persist and proliferate in specific niches within the host's anatomy. Further studies could elucidate the precise mechanisms by which N. meningitidis str. DuyDNT interacts with its host, which is essential for exploring its ecological roles and potential impacts on host health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 RPSF00000000.1 Bac0000259 Neisseria meningitidis str. VB860 "Neisseria meningitidis str. VB860 is a Gram-negative bacterium that exhibits a coccoid shape and typically arranges itself in pairs. This strain thrives optimally at a temperature of 35.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. As a host-associated microbe, N. meningitidis str. VB860 is adapted to live in close association with animal hosts, which is characteristic of many pathogenic and commensal Neisseria species.↵↵The combination of its coccoid morphology and specific growth conditions suggests that N. meningitidis str. VB860 may possess specialized adaptations that facilitate its survival and proliferation within host environments. This adaptation may enhance its competitive fitness in ecosystems where oxygen levels and temperature are regulated by host physiology. Further investigation into its metabolic pathways and interactions within the host could provide deeper insights into its biological roles, both as a potential pathogen and in its ecological niche within the microbiome." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 MVCA00000000.1 Bac0000260 Neisseria meningitidis "Neisseria meningitidis is a gram-negative, diplococci bacterium that thrives at human body temperature, classifying it as a mesophile. It is a chemoheterotroph, obtaining its energy from organic compounds and relying on host-derived nutrients. This pathogen is primarily found in the nasopharynx of healthy carriers, but it can also colonize the throat and can be present in the bloodstream and cerebrospinal fluid in cases of infections. As a gram-negative organism, N. meningitidis possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structural feature contributes to its virulence, as it can evade the immune response and establish infections. The characteristic diplococci shape allows the bacterium to adhere to epithelial surfaces in the nasopharynx, where it can colonize and spread. Its mesophilic nature enables it to thrive in the human body, where temperatures are around 37°C, creating an optimum environment for its growth and reproduction. As a chemoheterotroph, N. meningitidis relies on complex organic substances for energy and carbon, often utilizing glucose and other sugars present in host tissues. Its classification as a microaerophile indicates that it requires lower levels of oxygen than what is present in the atmosphere, making it well-adapted to the oxygen-limited conditions of the nasopharynx. N. meningitidis is notorious for causing serious diseases, including bacterial meningitis and meningococcemia, which can lead to rapid onset and high mortality if not treated promptly. Vaccination is available and has significantly reduced the incidence of these diseases in many populations, but the bacterium still poses a public health risk, particularly in crowded environments like colleges and military barracks. Its ability to form biofilms and its genetic diversity contribute to its enduring presence and occasional outbreaks." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 NWWY00000000.1 Bac0000261 Kingella kingae "Kingella kingae is a Gram-negative, rod-shaped bacterium that thrives in the human body, particularly in warm-blooded hosts, making it a mesophile. It is classified as a chemoheterotroph, obtaining its energy through the consumption of organic compounds, and is a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments. This microbe commonly colonizes the upper respiratory tract of healthy individuals, where it exists as part of the normal flora. Besides the nasopharynx, K. kingae has been isolated from various body sites, including the throat, oral cavity, and even in some instances, sterile body fluids when associated with infections. Its prevalence in the nasopharynx underscores its role in both commensalism and opportunistic pathogenicity. Kingella kingae is notably recognized for its association with osteoarticular infections, particularly in young children, where it can cause conditions such as septic arthritis and osteomyelitis. The pathogen is often implicated following trauma or in immunocompromised states, highlighting its opportunistic nature. The bacterium’s virulence factors include its ability to adhere to host tissues, evade immune responses, and form biofilms, enhancing its persistence in host environments. In laboratory settings, K. kingae demonstrates unique biochemical characteristics, such as the production of beta-lactamase enzymes, which can confer resistance to certain antibiotics. Its significance in clinical microbiology has increased due to the rising recognition of infections it can cause, particularly in children, and its challenge in diagnosis, as it often requires specific culture conditions for optimal growth. This microbe remains an area of interest for researchers studying infectious diseases, particularly in understanding its pathogenic mechanisms and developing potential treatments." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella kingae Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Multiple Nonsporulating 504 NZ_LN869922.1 Bac0000262 Alcaligenes faecalis "Alcaligenes faecalis is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, is classified as a chemotroph, and is an obligate aerobe. This microbe is commonly found in a variety of environmental settings, including soil, water, and the intestinal tracts of humans and animals, making it versatile in its habitat.As a Gram-negative organism, A. faecalis possesses a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, contributing to its resilience against certain antibiotics. The rod shape of this bacterium facilitates its movement and colonization in diverse environments, lending to its presence in fecal matter and its potential association with nosocomial infections.Being mesophilic, A. faecalis thrives optimally at moderate temperatures, which aligns with the body temperature of mammals, thereby providing it a niche in the gastrointestinal tract. Its classification as a chemotroph indicates that it derives energy from the oxidation of organic compounds, allowing it to survive in nutrient-rich environments like the intestines. As an obligate aerobe, it requires oxygen for growth and metabolism, which underscores its presence in aerobic conditions, especially in environments rich in organic matter. This bacterium's ability to degrade a range of organic compounds allows it to play a significant role in nutrient cycling within ecosystems. It has been studied for its potential application in bioremediation processes, where it could be utilized to break down environmental pollutants. Moreover, A. faecalis has been implicated in various infections, particularly in immunocompromised individuals, highlighting the dual nature of this microbe as both a beneficial and opportunistic organism in health and environmental contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes faecalis Negative Rod 1 Aerobe Fresh water; hospital environments; hospital settings; HostAssociated; soil; water Human 511 DOTO00000000.1 Bac0000263 Bordetella bronchiseptica "Bordetella bronchiseptica is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 35.0°C. This microbe is primarily associated with host organisms, indicating a symbiotic or pathogenic relationship, although specific interactions are not detailed in the data. ↵↵As an aerobe, B. bronchiseptica requires oxygen for its metabolic processes, which aligns with its habitat preference. The physiological and biochemical characteristics of this organism suggest it has evolved mechanisms to exploit oxygen-rich environments within its hosts, potentially influencing its survival and replication strategies. ↵↵Additionally, the optimal growth temperature of 35.0°C indicates that B. bronchiseptica is well-adapted to the warm-blooded hosts it inhabits. This temperature preference may reflect its evolutionary specialization to a particular niche within the respiratory systems of mammals. Understanding these traits is crucial for further investigations into the ecological roles and potential impacts of B. bronchiseptica in host-associated environments, particularly in relation to respiratory health in mammals." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica Negative Rod Yes 1 2 Aerobe 35 Mesophilic HostAssociated 518 NZ_CP024175.1 Bac0000264 Bordetella pertussis "Bordetella pertussis is a gram-negative, coccoid-shaped bacterium, classified as a mesophilic chemoheterotroph and a strict aerobe. This pathogen is primarily known for causing whooping cough, a highly contagious respiratory disease predominantly affecting children.Bordetella pertussis possesses a unique morphology that allows it to adhere to the ciliated epithelial cells of the upper respiratory tract, facilitating its role as a pathogenic agent. The gram-negative cell wall structure consists of a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, contributing to its virulence and ability to evade the host's immune response. As a mesophile, it thrives at moderate temperatures, ideally between 35°C and 37°C, mimicking the conditions within the human body. Being a chemoheterotroph, Bordetella pertussis relies on organic compounds as its primary source of energy and carbon. It utilizes nutrients derived from the host's respiratory secretions, which are critical for its growth and reproduction. As an obligate aerobe, it necessitates the presence of oxygen for its metabolic processes, setting it apart from other anaerobic microbes that might thrive without oxygen. This bacterium is significant not just because of its role in respiratory diseases, but also due to its ability to evade immune detection. It employs several virulence factors, including pertussis toxin and adhesins, which allow it to colonize effectively and cause disease. Bordetella pertussis demonstrates a complex life cycle with unique public health implications, as vaccination efforts have significantly reduced its prevalence, yet outbreaks still occur, highlighting the importance of continued vigilance and research." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella pertussis Negative Rod NA 1 2 Aerobe 35 Mesophilic HostAssociated 520 NZ_CP025530.1 Bac0000265 Chromobacterium violaceum "Chromobacterium violaceum is a gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25°C to 37°C, categorizing it as a mesophile. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, and utilizes sugars, amino acids, and other organic molecules as its carbon and energy source. C. violaceum uses aerobic respiration to produce energy, requiring the presence of oxygen to function optimally. The bacterium stains negative with the Gram stain, indicating the presence of a thin peptidoglycan layer in its cell wall. Its rod-shaped morphology allows it to be easily observed under a light microscope. C. violaceum is commonly found in a wide range of environments, including soil, water, and the human gastrointestinal tract, as well as other body sites such as the respiratory, urinary, and cutaneous tracts. The bacterium is an obligate aerobe, requiring the presence of oxygen to survive and replicate. In the absence of oxygen, C. violaceum is unable to grow and maintain its metabolic processes. One of the defining characteristics of C. violaceum is its ability to produce a distinctive purple pigment, violacein, which is responsible for its characteristic color. This pigment has been found to have antimicrobial and antiviral properties, making it a potential candidate for the development of natural antibiotics. Furthermore, C. violaceum has been found to have antimicrobial resistance genes, which has sparked interest in understanding the mechanisms underlying this resistance." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium violaceum Negative Cocci Yes 1 2 Facultatively anaerobe 25 Mesophilic Multiple 536 UIGR00000000.1 Bac0000266 Chromobacterium vaccinii "Chromobacterium vaccinii is a Gram-negative, cocci-shaped bacterium that exhibits facultative anaerobic growth, enabling it to thrive in various environments. Optimal growth occurs at a temperature of 25.0°C, suggesting a preference for moderate thermal conditions. This microbe is found in multiple habitats, indicating its ecological versatility and adaptability to diverse niches.↵↵The facultatively anaerobic nature of C. vaccinii allows it to utilize both aerobic and anaerobic respiration, which may contribute to its survival in fluctuating oxygen conditions. This trait is particularly beneficial for colonization in environments where oxygen availability is inconsistent, thereby enhancing its ecological range. ↵↵While specific pathogenicity or ecological roles of C. vaccinii have not been detailed in the provided traits, its presence across multiple habitats suggests potential interactions with various biotic and abiotic factors. This adaptability may play a role in nutrient cycling or microbial community dynamics, although further research would be necessary to elucidate its specific contributions to ecosystem functions. Such versatility underscores the importance of C. vaccinii in microbial ecology and its potential implications for environmental microbiology." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium vaccinii Negative Cocci Yes 1 2 Facultatively anaerobe 25 Mesophilic Multiple 536 UFVJ00000000.1 Bac0000267 Eikenella corrodens "Eikenella corrodens is a gram-negative, rod-shaped bacterium that thrives at human body temperature, categorizing it as a mesophile. This microbe is a heterotroph, relying on organic compounds for nutrition, and is classified as a facultative anaerobe, able to grow in both aerobic and anaerobic environments. Eikenella corrodens is part of the normal flora of humans, colonizing various body sites, including the mouth, gastrointestinal tract, and female genital tract, where it plays a role in maintaining microbial balance. The gram-negative nature of Eikenella corrodens indicates that it has a thin peptidoglycan layer and is surrounded by an outer membrane containing lipopolysaccharides, which can contribute to its pathogenic potential. This bacterium's rod-shaped morphology allows it to adapt well to its environments, whether within the biofilms of oral cavities or in deeper tissue infections. As a mesophilic organism, it prefers temperatures around 37°C, which aligns perfectly with the human body temperature, providing ideal conditions for growth. Being a facultative anaerobe, Eikenella corrodens can utilize oxygen when available but also has the flexibility to grow in its absence, showcasing its versatility. Its heterotrophic nature means it metabolizes organic matter, often from the host, contributing to both its symbiotic and pathogenic relationships. Eikenella corrodens is associated with human bite wounds and dental infections, and it can cause serious infections in immunocompromised individuals. Remarkably, it has been recognized for its role in periodontitis and endocarditis, highlighting its significance in both oral health and systemic infections. Interestingly, despite its pathogenic potential, Eikenella corrodens has been noted for its susceptibility to many antibiotics, allowing for effective treatment options in cases of infection." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella corrodens Negative Rod Facultative anaerobe gastrointestinal; genital tracts; intestinal; oral cavity; oropharyngeal; oropharynx; respiratory; upper respiratory tract; urogenital tract 539 LXSF00000000.1 Bac0000268 Citrobacter freundii "Citrobacter freundii is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, is classified as a chemoheterotroph, and functions as a facultative anaerobe. This microbe is found in a variety of environments, including human and animal intestines, soil, and water, where it thrives as part of the normal gut flora.As a gram-negative organism, C. freundii possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a characteristic that contributes to its pathogenic potential in certain situations. Its rod shape allows for efficient motility, often attributed to flagella, facilitating its survival in diverse environments. As a mesophilic organism, C. freundii prefers moderate temperatures, typically flourishing between 30°C and 37°C, which aligns well with the average temperatures found in mammalian bodies.C. freundii's classification as a chemoheterotroph indicates that it acquires energy and carbon from organic compounds, which it metabolizes through a range of biochemical pathways. This versatility allows it to thrive in varied environments, contributing to its role in nutrient cycling. Being a facultative anaerobe, C. freundii can grow in both aerobic and anaerobic conditions. This adaptability enables it to survive in oxygen-rich environments as well as in the oxygen-limited conditions found within the gastrointestinal tract. Beyond its role as a commensal organism, C. freundii can also be an opportunistic pathogen, implicated in urinary tract infections, septicemia, and gastroenteritis. It is of particular concern in clinical settings due to its resistance to multiple antibiotics, providing a significant challenge in treatment. Additionally, its ability to degrade a variety of substrates makes it an attractive candidate for biotechnological applications, particularly in waste treatment processes and bioremediation efforts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 LJEB00000000.1 Bac0000269 Citrobacter freundii str. c196 "Citrobacter freundii strain c196 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is nonsporulating and has been identified in a variety of environments, including hospital sewage, the intestinal tract, general sewage, soil, and surface waters. Its presence in diverse habitats suggests a versatile ecological role, allowing it to adapt to both anaerobic and aerobic conditions. ↵↵The ability to thrive in hospital sewage indicates a potential association with human activity, while its isolation from natural environments such as soil and surface waters highlights its adaptability and resilience. The varied habitats of C. freundii str. c196 may reflect its role in nutrient cycling and organic matter decomposition within these ecosystems. Its adaptable nature may enable it to respond to environmental changes, potentially influencing microbial community dynamics in both clinical and natural settings. This strain's capacity to inhabit both anthropogenic and natural environments underscores its significance in understanding microbial ecology and the impacts of human waste on microbial populations in the environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NEEZ00000000.1 Bac0000270 Citrobacter freundii str. CF8_ST22 "Citrobacter freundii strain CF8_ST22 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in diverse environments, including hospital sewage, the intestinal tract, sewage systems, soil, and surface waters. This microbe exhibits facultative anaerobic respiration, allowing it to survive in both aerobic and anaerobic conditions. ↵↵C. freundii is a member of the Enterobacteriaceae family, which is commonly found in the intestinal microbiota of humans and animals, as well as in various environmental contexts. Its presence in hospital sewage highlights its ability to adapt to varying nutrient conditions and potentially serve as a bioindicator for monitoring microbial contamination in healthcare settings. ↵↵The strain's ecological versatility suggests a significant role in nutrient cycling within the environments it inhabits, particularly in decomposition processes in soil and aquatic systems. Given the strain's isolated habitats, further investigations into its metabolic capabilities could unveil insights into its contributions to biogeochemical cycles or its interactions with other microbial communities. Overall, C. freundii strain CF8_ST22 serves as a pertinent example of how microorganisms can adapt to and thrive in varied ecological niches, emphasizing the importance of understanding their roles in both health and environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 MCOP00000000.1 Bac0000271 Citrobacter freundii str. GED7749C "Citrobacter freundii str. GED7749C is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain does not undergo sporulation, indicating a reliance on vegetative growth under various environmental conditions. C. freundii is commonly found in diverse habitats, including hospital sewage, sewage systems, soil, surface waters, and the intestinal tracts of various organisms, suggesting a versatile ecological adaptability.↵↵The presence of C. freundii in hospital sewage highlights its potential role in the microbial communities associated with human waste, where it may contribute to biogeochemical cycles or influence the dynamics of other microbial populations. Its facultative anaerobic nature allows it to thrive in both oxygen-rich and oxygen-poor environments, further enhancing its survival across different habitats.↵↵Additionally, the ability of C. freundii to inhabit the intestinal tract indicates its potential involvement in symbiotic or commensal relationships within the gut microbiome, although the precise interactions and contributions to host health or disease remain to be elucidated. Overall, Citrobacter freundii str. GED7749C exemplifies a resilient bacterium capable of colonizing varied environments, underscoring its significance in both natural ecosystems and anthropogenic settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 LRPR00000000.1 Bac0000272 Klebsiella pneumoniae "Klebsiella pneumoniae is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites, including the respiratory, urinary, and intestinal tracts, of all possible species, and is a facultative anaerobe. As a gram-negative bacterium, Klebsiella pneumoniae has a unique outer membrane containing lipopolysaccharides, which plays a crucial role in its pathogenicity. Its rod shape allows it to move and colonize efficiently, making it a successful opportunistic pathogen. The mesophilic temperature preference of Klebsiella pneumoniae enables it to grow optimally at human body temperature, which is around 37°C. As a chemoheterotroph, Klebsiella pneumoniae relies on organic compounds for energy and carbon, which it obtains from its host or environment. Its ability to inhabit various body sites makes it a versatile microbe, capable of causing a range of infections. Furthermore, its classification as a facultative anaerobe means it can grow in both aerobic and anaerobic conditions, allowing it to thrive in different environments. Klebsiella pneumoniae has been implicated in various diseases, including pneumonia, urinary tract infections, and sepsis, making it a significant concern in healthcare settings. The microbe's ability to develop resistance to multiple antibiotics has led to the emergence of carbapenem-resistant Klebsiella pneumoniae, which poses a significant threat to public health, and researchers are working to develop new strategies to combat its spread and infection." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 548 NZ_LR134211.1 Bac0000273 Klebsiella aerogenes "Klebsiella aerogenes is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures (optimal growth between 30°C and 37°C), is classified as a chemoheterotroph, and functions as a facultative anaerobe. This versatile organism is commonly found in various body sites, including the respiratory tract, gastrointestinal tract, and the urinary system, where it can exist as a part of the normal flora or as a potential pathogen. As a gram-negative bacterium, Klebsiella aerogenes is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contribute to its virulence. This structural composition not only provides protection from certain antibiotics but also plays a role in triggering immune responses. The rod shape allows for efficient motility and colonization in diverse environments, ranging from human hosts to soil and water. Being mesophilic, Klebsiella aerogenes is well adapted to human body temperatures, facilitating its role in both normal flora and opportunistic infections. As a facultative anaerobe, it can grow in both aerobic and anaerobic conditions, allowing it to thrive in various niches within the human body. As a chemoheterotroph, it relies on organic compounds for energy and carbon sources, which it derives from its environment or host. Klebsiella aerogenes is particularly notable for its antibiotic resistance, especially its ability to produce extended-spectrum beta-lactamases (ESBLs), making infections challenging to treat. This resistance has led to its classification as a priority pathogen by the World Health Organization. The bacterium is also involved in various infections, including pneumonia, bloodstream infections, and urinary tract infections, making it a significant concern in healthcare settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella aerogenes Negative 1 Facultative anaerobe Mesophilic HostAssociated Free living 548 PIBP00000000.1 Bac0000274 Enterobacter hormaechei "Enterobacter hormaechei is a Gram-negative, rod-shaped bacterium that thrives as a mesophile, preferring moderate temperatures. It is classified as a chemoheterotroph, deriving energy and carbon from organic compounds, and is a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments. This versatile microbe is commonly found in various body sites, including the gastrointestinal tract, respiratory system, and urinary tract, making it an important organism in both environmental and clinical settings. As a Gram-negative bacterium, Enterobacter hormaechei possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its resilience against certain antibiotics and the host's immune response. Its rod-shaped morphology allows for mobility and colonization in diverse environments, including human hosts, where it can sometimes lead to opportunistic infections. The mesophilic nature of this microbe enables it to thrive at body temperature (around 37°C), which is crucial for its survival in a host. Being a chemoheterotroph, E. hormaechei utilizes various organic substrates for growth, which facilitates its presence in environments rich in organic matter, such as fecal matter and hospital waste. Its facultative anaerobic capability allows it to adapt to different oxygen levels, enabling it to colonize various body niches effectively. E. hormaechei has gained significant attention due to its potential role in nosocomial infections, especially in immunocompromised patients. Its ability to acquire antibiotic resistance genes through horizontal gene transfer further complicates treatment options. The emergence of multidrug-resistant strains highlights the importance of monitoring this microbe in clinical microbiology and public health settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative 1 Facultative anaerobe Mesophilic HostAssociated Free living 548 FKCM00000000.1 Bac0000275 Klebsiella quasipneumoniae "Klebsiella quasipneumoniae is a Gram-negative bacterium classified within the Enterobacteriaceae family. This microbe is primarily host-associated, indicating a symbiotic or pathogenic relationship with its host organisms, which are typically mammals. K. quasipneumoniae exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which contributes to its adaptability in various biological niches.↵↵The organism's Gram-negative cell wall structure comprises a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural characteristic not only plays a role in its resistance to certain antibiotics but also affects its interactions with the host immune system. The facultative anaerobic nature of K. quasipneumoniae suggests that it can utilize oxygen when available but can also ferment substrates in the absence of oxygen, enhancing its survival in diverse environments, including the gastrointestinal tract of hosts.↵↵Emerging evidence suggests that K. quasipneumoniae may exhibit ecological versatility, potentially occupying distinct niches in the microbiome of its host. This adaptability could enable it to play a role in nutrient cycling within host-associated environments, highlighting its potential importance in both health and disease contexts. Further exploration of its ecological interactions may provide insights into its role in dysbiosis and host-microbe dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae Negative 1 Facultative anaerobe Mesophilic HostAssociated Free living 548 UGJK00000000.1 Bac0000276 Pantoea agglomerans "Pantoea agglomerans is a gram-negative, rod-shaped bacterium, classified as a facultative anaerobe and a chemoheterotroph, thriving optimally at temperatures ranging from 25°C to 37°C. This versatile microbe can inhabit various ecological niches, including soil, water, and the gastrointestinal tracts of plants and animals, making it widely distributed across different body sites, particularly in plants, where it is often found in association with the roots and tissues. As a gram-negative organism, Pantoea agglomerans has a complex cell wall structure characterized by a thin peptidoglycan layer sandwiched between an inner cell membrane and an outer membrane containing lipopolysaccharides. This feature contributes to its ability to evade environmental stressors and antimicrobial agents. The rod shape facilitates mobility and colonization, allowing Pantoea to effectively spread and establish within various habitats. Being a facultative anaerobe, Pantoea agglomerans can survive in both aerobic and anaerobic environments, displaying metabolic flexibility that enables it to thrive under varying oxygen levels. Its classification as a chemoheterotroph indicates that it derives its energy and carbon from organic compounds, making it reliant on external sources for survival. This metabolic adaptability is crucial for its role in plant-microbe interactions, where it can promote growth and enhance nutrient uptake. Pantoea agglomerans has garnered attention for its potential applications in biocontrol and agriculture. It has been investigated for its ability to inhibit plant pathogens, making it a candidate for use as a biofertilizer or biopesticide. The versatility of this microbe, along with its interactions with plant hosts, illustrates its ecological significance and potential benefits in sustainable agricultural practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 549 PDEG00000000.1 Bac0000277 Pantoea agglomerans str. CFBP13505 "Pantoea agglomerans str. CFBP13505 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe that thrives optimally at a temperature of 30.0°C. This organism utilizes a chemoheterotrophic mode of metabolism, indicating its reliance on organic compounds for energy and carbon. Pantoea agglomerans is known to inhabit diverse environments, which may contribute to its metabolic versatility and ecological adaptability.↵↵The facultative anaerobic nature of Pantoea agglomerans str. CFBP13505 allows it to survive in both oxygen-rich and low-oxygen conditions, thereby broadening its potential ecological niches. This trait may enable the bacterium to occupy varied habitats, from soil to plant surfaces, where it can interact with other microorganisms and host organisms. The ability to thrive in multiple environments suggests that Pantoea agglomerans str. CFBP13505 could play a role in nutrient cycling and may participate in complex microbial communities.↵↵Overall, the metabolic flexibility and ecological resilience of Pantoea agglomerans str. CFBP13505 highlight its potential importance in environmental microbiology, particularly in contexts where organic matter decomposition and nutrient dynamics are critical." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 549 NZ_CP143523.1 Bac0000278 Pantoea agglomerans str. PNG 92-11 "Pantoea agglomerans str. PNG 92-11 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism and thrives optimally at a temperature of 30.0°C. As a chemoheterotroph, this strain utilizes organic compounds as its energy source, reflecting its adaptability to various nutrient environments. The organism is found in diverse habitats, suggesting a broad ecological niche that may facilitate interactions with other microbial communities and organisms.↵↵The facultative anaerobic nature of P. agglomerans str. PNG 92-11 allows it to survive in both oxygen-rich and low-oxygen environments, which may contribute to its resilience and versatility in fluctuating ecological conditions. This trait could be particularly advantageous in environments where oxygen levels vary, enabling the strain to exploit available resources efficiently. The combination of its metabolic capabilities and habitat diversity indicates that Pantoea agglomerans str. PNG 92-11 may play a role in nutrient cycling and microbial interactions within its ecosystem, although specific ecological functions remain to be elucidated." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 549 QGHE00000000.1 Bac0000279 Enterobacter cloacae str. PLV-MS02 "Enterobacter cloacae strain PLV-MS02 is a Gram-negative, rod-shaped bacterium recognized for its facultative anaerobic metabolism, allowing it to thrive in various oxygen conditions. This strain is part of the Enterobacter genus, which is known for its versatility in diverse habitats, indicating its potential adaptability to different environmental niches. ↵↵Facultative anaerobes like E. cloacae can utilize oxygen when present but are also capable of fermentative metabolism in its absence, positioning them advantageously in fluctuating environments. This adaptability suggests that E. cloacae strain PLV-MS02 is well-suited for survival in both aerobic and anaerobic conditions, which may include soil, water, and various plant and animal-associated environments.↵↵The ability of E. cloacae to occupy multiple habitats underscores its ecological significance, as it may play a role in nutrient cycling and interactions within microbial communities. Furthermore, its presence in diverse environments highlights the need for continued research into the ecological roles and potential applications of this strain, particularly in biotechnological contexts. Understanding its metabolic capabilities could provide insights into its function within microbial ecosystems and its potential utility in environmental management or industrial processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 RQJF00000000.1 Bac0000280 Enterobacter cloacae "Enterobacter cloacae is a Gram-negative, rod-shaped bacterium that thrives in a variety of environments, with a temperature preference category of mesophilic, meaning it grows optimally between 25-40°C. As a heterotroph, it obtains its energy by breaking down organic matter, utilizing the chemical energy stored in the nutrients. Specifically, it produces energy through anaerobic respiration, which involves the conversion of glucose into lactic acid. Enterobacter cloacae is a facultative anaerobe, meaning it can survive and grow in both aerobic and anaerobic environments. However, it exhibits a preference for oxygen and grows more rapidly in its presence. This is reflected in its gram stain, which characterizes it as a Gram-negative bacterium due to the absence of a peptidoglycan layer. The rod-shaped morphology of Enterobacter cloacae allows it to colonize a wide range of body sites, including the gut, urinary tract, and respiratory tract, as well as various environmental niches such as soil, water, and food. Its ability to thrive in diverse environments is likely due to its versatility in energy production and its capacity to adapt to varying oxygen levels. In terms of growth habits, Enterobacter cloacae is a chemoheterotroph, using organic compounds as its energy source. It is also a chemoorganotroph, meaning it utilizes the chemical energy stored in these compounds to generate ATP. This characteristic allows it to survive and grow in environments with limited light or in the absence of sunlight. In addition to its ecological significance, Enterobacter cloacae has been linked to various diseases in humans, including urinary tract infections, wound infections, and respiratory infections. Its ability to colonize and cause disease in different parts of the body is a testament to its adaptability and broad host range." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 RHWT00000000.1 Bac0000281 Enterobacter cloacae str. amazonensis "Enterobacter cloacae strain amazonensis is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is part of the diverse Enterobacter genus, which is commonly found in various environments, indicating its adaptability to multiple habitats. As a facultative anaerobe, E. cloacae str. amazonensis can thrive in both the presence and absence of oxygen, allowing it to occupy a range of ecological niches where oxygen levels may fluctuate.↵↵The versatility of Enterobacter cloacae in its habitat preferences suggests a potential role in nutrient cycling and bioremediation processes, particularly in environments where organic matter is abundant. Given its ability to grow in diverse conditions, E. cloacae str. amazonensis may contribute to the microbial community dynamics in soil, water, and possibly within associated host organisms. This adaptability underscores the importance of studying such strains, as they may possess unique metabolic capabilities that could be harnessed for biotechnological applications. Overall, Enterobacter cloacae str. amazonensis exemplifies the resilience and ecological significance of bacteria within the Enterobacter genus." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 PZPP00000000.1 Bac0000282 Pectobacterium carotovorum str. SCC1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium versatile 554 NZ_CP021895.1 Bac0000283 Escherichia coli str. 14EC033 "Escherichia coli strain 14EC033 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singly. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many warm-blooded hosts, indicating its adaptation to host-associated environments. As a facultative anaerobe, E. coli 14EC033 can metabolize in both aerobic and anaerobic conditions, allowing it to occupy diverse niches within host organisms.↵↵The Gram-negative cell wall structure of this strain comprises a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that influences its interactions with the host immune system and its overall physiological properties. The ability to grow in pairs or as single cells may reflect its adaptability to different environments within the host, potentially influencing its colonization strategies.↵↵Given its habitat, E. coli 14EC033 likely plays a role in the complex microbial communities associated with host organisms, contributing to various biochemical processes. This strain may engage in fermentative metabolism or contribute to the gut microbiota's overall functionality, highlighting the importance of E. coli in maintaining host health and homeostasis. Understanding the specific interactions of E. coli 14EC033 within its host could provide insights into its ecological role and the dynamics of host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP024147.1 Bac0000284 Escherichia coli str. 204965 "Escherichia coli strain 204965 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its common host environments. E. coli strain 204965 is categorized as a facultative anaerobe, indicating its ability to adapt to both aerobic and anaerobic conditions, thereby enhancing its survival in varied habitats.↵↵The strain is host-associated, suggesting a close relationship with its biological hosts, which may include a variety of animals and potentially humans. This association typically involves inhabiting the intestinal tract, where E. coli plays a crucial role in the microbiome, contributing to nutrient absorption and digestion. However, the specific ecological role of strain 204965 within its host environment remains to be clearly defined.↵↵Given its traits, Escherichia coli strain 204965 likely exhibits a versatile metabolic capacity that enables it to thrive in diverse environments, adapting to different oxygen levels and temperatures. This adaptability underscores the significance of such strains in ecological contexts, where they can contribute to maintaining microbial diversity and stability within their host-associated ecosystems. Further research may illuminate the specific interactions and functions of this strain in its natural habitat, offering insights into the broader implications of E. coli in microbiological studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MSEK00000000.1 Bac0000285 Escherichia coli str. 51008369SK1 "Escherichia coli str. 51008369SK1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as singles. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a common characteristic among many E. coli strains. The optimal growth temperature for E. coli str. 51008369SK1 is approximately 37.0°C, aligning with the typical human body temperature and suggesting its adaptation to a host-associated habitat.↵↵This strain's habitat is specifically noted as host-associated, which implies a potential relationship with the gastrointestinal tract of mammals, where E. coli is predominantly found. The facultative anaerobic nature of this bacterium allows it to utilize various metabolic pathways depending on the availability of oxygen, contributing to its versatility in diverse environments within the host.↵↵The ability of E. coli str. 51008369SK1 to exist in both aerobic and anaerobic conditions may facilitate its survival and colonization in the dynamic microenvironments of the host's intestinal flora. Understanding the traits of this particular strain can provide insights into its potential roles within the microbiome, including nutrient cycling and interactions with other microbial communities, underscoring the complexity of host-associated bacterial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029974.1 Bac0000286 Escherichia coli str. BE104 "Escherichia coli strain BE104 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is a common feature among many members of the Enterobacteriaceae family. E. coli BE104 optimally grows at a temperature of 37.0°C, aligning with the physiological conditions often found in warm-blooded hosts, where it is predominantly associated.↵↵As a host-associated microbe, E. coli BE104 likely plays a role in the complex microbial ecosystems of its host, contributing to various metabolic processes. Its ability to adapt to fluctuating oxygen levels suggests potential versatility in metabolic pathways, which may facilitate its survival in diverse microhabitats within the host. This adaptability could also imply a role in nutrient cycling or competition with other microorganisms, although specific interactions remain to be elucidated.↵↵Overall, the traits of E. coli strain BE104 highlight its potential significance within host-associated microbiomes, where its facultative anaerobic capabilities may influence community dynamics and host health. Further exploration of this strain's functional roles could provide insights into its contributions to microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP040643.1 Bac0000287 Escherichia coli str. CRE1540 "Escherichia coli strain CRE1540 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain, like many members of the E. coli species, exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. E. coli CRE1540 has an optimal growth temperature of 37.0°C, which aligns with the typical physiological temperature of mammalian hosts, suggesting its adaptation to a host-associated habitat.↵↵The facultative anaerobic nature of E. coli CRE1540 indicates its versatility in utilizing oxygen for respiration when available, while also being capable of fermentation processes under anaerobic conditions. This metabolic flexibility is a significant trait that enables the organism to survive in various environments within the host, such as the gastrointestinal tract, where oxygen levels can fluctuate.↵↵Understanding the specialized traits of E. coli CRE1540 may provide insights into its role within the microbiome of its host, as well as its interactions with other microbial communities. The ability to grow in pairs or as single cells may reflect adaptive strategies for colonization and resource utilization in dynamic environments, further emphasizing the importance of studying strain-specific characteristics in understanding microbial ecology and physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP019054.1 Bac0000288 Escherichia coli str. EC17GD31 "Escherichia coli str. EC17GD31 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli str. EC17GD31 has the versatile ability to grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within the host. ↵↵The bacterium's Gram-negative nature suggests a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is indicative of the genus Escherichia, which is commonly found in the intestinal tracts of warm-blooded organisms. The host-associated nature of E. coli str. EC17GD31 points to a potential role in the gut microbiome, where it may contribute to the maintenance of intestinal health and functionality.↵↵The adaptability of E. coli str. EC17GD31 to different oxygen levels may enable it to occupy diverse niches within the host environment, facilitating its survival and potential interactions with other microbial inhabitants. Such versatility underscores the importance of this strain in understanding microbial dynamics and host-microbe interactions within the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP031297.1 Bac0000289 Escherichia coli str. EcSS20 "Escherichia coli strain EcSS20 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is indicative of its versatile metabolic capabilities. Optimal growth for EcSS20 occurs at a temperature of 37.0 degrees Celsius, a characteristic that aligns with its association with host organisms, where it is often found in the gastrointestinal tract.↵↵The habitat of E. coli str. EcSS20 suggests a close relationship with its host, potentially playing a role in the microbiota that contributes to the host’s gut health. The ability to adapt to varying oxygen levels enhances its survival in the complex and dynamic conditions of the intestinal environment. ↵↵The specific traits of E. coli str. EcSS20 may offer insights into its functional role in nutrient metabolism and interaction with the host immune system, underscoring the importance of understanding such strains in the broader context of microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SDDW00000000.1 Bac0000290 Escherichia coli str. EK2009 "Escherichia coli strain EK2009 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It has an optimal growth temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat.↵↵E. coli is widely recognized for its role in the gastrointestinal tract of various organisms, where it plays a critical part in the microbiome and digestive processes. The facultative anaerobic nature of strain EK2009 allows it to metabolize nutrients efficiently in the presence or absence of oxygen, contributing to its survival and proliferation in diverse niches within host environments.↵↵The existence of E. coli strain EK2009 in a host-associated habitat underscores its potential interactions with the host's immune system and other microbial inhabitants. This strain may participate in complex microbial communities, influencing gut health and nutrient absorption. Understanding the specific traits of strain EK2009 can provide insights into its ecological roles and functional contributions within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP040663.1 Bac0000291 Escherichia coli str. FC853_EC "Escherichia coli strain FC853_EC is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which is a characteristic feature of many E. coli strains. The optimal growth temperature for FC853_EC is approximately 37.0°C, aligning with the typical body temperature of warm-blooded hosts. ↵↵E. coli strains, including FC853_EC, are primarily host-associated, suggesting a close relationship with their host organisms, which may include humans and various animals. This association can facilitate diverse interactions ranging from symbiotic relationships to opportunistic infections, although specific pathogenicity traits have not been provided for this strain. ↵↵The combination of its Gram-negative cell wall structure and facultative anaerobic metabolism allows FC853_EC to thrive in a variety of environments, potentially enhancing its adaptability in the gut microbiome of its host. This adaptability underscores the significance of E. coli in nutrient cycling and the maintenance of gut health, where it may play a role in synthesizing essential metabolites and influencing the overall microbial community structure. Further studies on this strain could provide insights into its specific contributions to host-associated microbiomes and the ecological roles it may fulfill within these complex systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP040919.1 Bac0000292 Escherichia coli str. FORC_082 "Escherichia coli strain FORC_082 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain, like other members of the E. coli species, thrives optimally at 37.0°C, which corresponds to the typical body temperature of warm-blooded hosts. E. coli FORC_082 is classified as a facultative anaerobe, enabling it to grow in both aerobic and anaerobic conditions, a trait that allows for versatile metabolic capabilities in varied environments.↵↵The habitat of E. coli FORC_082 is host-associated, suggesting that it is likely found within the gastrointestinal tracts of animals or humans. This association points to its potential role in the microbial communities that contribute to the digestive processes of its host organisms. The presence of this strain in host-associated environments underscores the importance of E. coli as a model organism in microbiological studies, particularly in understanding host-microbe interactions and the dynamics of gut microbiota.↵↵Given its facultative anaerobic nature and optimal growth temperature, E. coli FORC_082 may play a significant role in nutrient cycling within its host, contributing to the fermentation of undigested carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. This ecological insight highlights the potential contributions of this strain to both microbial diversity and host metabolism, underscoring the intricate relationships between microorganisms and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP026641.1 Bac0000293 Escherichia coli str. HPCN26 "Escherichia coli strain HPCN26 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. It is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Escherichia coli species, HPCN26 likely shares common physiological traits with other strains, including versatility in nutrient utilization and metabolic pathways. The facultative anaerobic nature allows it to survive in various environments, including those within the gastrointestinal tract of hosts, where oxygen levels may fluctuate. This adaptability is crucial for colonization, survival, and potential interactions with the host's immune system.↵↵The ecological significance of Escherichia coli HPCN26 may extend beyond its basic metabolic capabilities, as it may play a role in the microbial communities associated with its host, contributing to the balance of gut microbiota. The presence of such strains highlights the importance of understanding microbial dynamics within host-associated environments, which can influence nutrient absorption and overall health. Further research on HPCN26 could provide insights into its specific roles within these complex ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QMKN00000000.1 Bac0000294 Escherichia coli str. MS6198 "Escherichia coli strain MS6198 is a rod-shaped, Gram-negative bacterium that exhibits a versatile growth pattern, typically found in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting a close association with host environments. E. coli MS6198 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which further supports its adaptability to various niches within host-associated habitats.↵↵The facultative anaerobic nature of E. coli MS6198 allows it to metabolize substrates in varying oxygen levels, enabling it to exploit diverse ecological niches and potentially interact with other microbial communities within the host. This adaptability may play a crucial role in its survival and function in the microbiota, where it can contribute to essential processes such as nutrient cycling and maintaining gut health. Understanding the physiological traits of E. coli MS6198 can provide insights into its ecological role and potential interactions within its host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP015836.1 Bac0000295 Escherichia coli str. MS8345 "Escherichia coli str. MS8345 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli str. MS8345 is categorized as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, a trait that enhances its survival and colonization potential within diverse host conditions. ↵↵The facultative anaerobic nature of this strain may enable it to effectively utilize available metabolic pathways depending on the oxygen levels present in its environment, which is particularly advantageous in the fluctuating conditions found within host organisms. The ability to persist in varying oxygen concentrations could also contribute to its resilience in different biological niches, potentially influencing its interactions with the host's microbiome. ↵↵Overall, the combination of its optimal growth temperature, rod shape, and versatile metabolic capabilities underscores the adaptability of E. coli str. MS8345 within host-associated environments, highlighting its role in the complex interplay of microbial communities within the host ecosystem. Understanding these traits may provide insights into its functional roles and contributions to host health and microbial dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP025402.1 Bac0000296 Escherichia coli str. RS571 "Escherichia coli strain RS571 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli RS571 has an optimal growth temperature of 37.0°C, which aligns with the typical mammalian host body temperature, suggesting its adaptation to a host-associated habitat. ↵↵The species E. coli is widely recognized for its role in the intestinal microbiota of various hosts, where it contributes to nutrient absorption and the maintenance of gut health. While specific details regarding strain RS571's interactions within its host are not provided, its facultative anaerobic metabolism implies a versatile capability to utilize various substrates for energy, which can be advantageous in fluctuating oxygen levels within the host environment.↵↵The ability of E. coli RS571 to grow under varying oxygen conditions may allow it to colonize diverse niches within the host, potentially influencing gut microbiome dynamics and host health. This adaptability underscores the ecological significance of E. coli strains, including RS571, in maintaining the stability of microbial communities in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP034390.1 Bac0000297 Escherichia coli str. S17-1 "Escherichia coli str. S17-1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, underscoring its adaptation to a host-associated habitat. E. coli str. S17-1 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which allows it to occupy various niches within a host organism.↵↵The versatility of E. coli str. S17-1 in utilizing different metabolic pathways depending on the availability of oxygen suggests a robust adaptability to fluctuating environmental conditions within its host. This adaptability may facilitate its survival and proliferation in diverse physiological environments, ranging from the intestinal tract to other tissues where oxygen levels can vary. Understanding the traits of E. coli str. S17-1 can provide insights into the complex interactions that this bacterium may have with its host, as well as its potential roles in microbial communities. The ability to thrive at 37.0°C and to utilize both oxygen-rich and oxygen-poor conditions highlights the potential for E. coli str. S17-1 to play a significant role in the metabolic processes occurring within the host, contributing to the overall homeostasis of the microbial ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP040667.1 Bac0000298 Escherichia coli str. SLK172 "Escherichia coli strain SLK172 is a Gram-negative, rod-shaped bacterium that commonly exists in a host-associated habitat. This strain exhibits a cellular arrangement primarily in pairs and singles, reflecting its typical morphology within diverse environments. E. coli SLK172 thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the intestines of warm-blooded hosts.↵↵As a facultative anaerobe, E. coli SLK172 possesses the metabolic flexibility to grow in both the presence and absence of oxygen, enabling it to adapt to varying oxygen levels within its host environment. This adaptability is crucial for survival in the dynamic conditions of the gastrointestinal tract, where oxygen availability can fluctuate significantly due to microbial activity and host physiology.↵↵The association of E. coli SLK172 with host organisms suggests potential roles in nutrient metabolism and microbial community dynamics within the gut ecosystem. Understanding the specific interactions of this strain with its host could provide insights into its contributions to health and disease, as well as its potential influence on the overall gut microbiome. Such knowledge may further illuminate the ecological significance of E. coli strains in maintaining gut homeostasis and their responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP017633.1 Bac0000299 Escherichia coli str. U14A "Escherichia coli str. U14A is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, reflecting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli str. U14A can grow in both aerobic and anaerobic conditions, allowing it to exploit a range of environments within the host. ↵↵The ability to thrive in diverse oxygen conditions may confer an ecological advantage, enabling this strain to occupy niches in various host tissues where oxygen availability can fluctuate. This adaptability is a key feature of many E. coli strains, facilitating their persistence and survival in the complex microenvironments of their hosts. Understanding the physiological traits of E. coli str. U14A enhances our knowledge of its ecological role and potential interactions within host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP035517.1 Bac0000300 Escherichia coli O157:H7 "Escherichia coli O157:H7 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli O157:H7 has an optimal temperature of approximately 37.0°C, which coincides with the average human body temperature, suggesting a significant association with warm-blooded hosts.↵↵The habitat of E. coli O157:H7 is primarily host-associated, indicating a strong relationship with the gastrointestinal tracts of animals, particularly ruminants such as cattle. This association highlights the bacterium's potential for transmission through the food chain, particularly in undercooked or contaminated food products. Furthermore, the facultative anaerobic nature of E. coli O157:H7 may confer advantages in fluctuating oxygen conditions within the gut environment, allowing it to maintain metabolic versatility.↵↵Unique to E. coli O157:H7 is its adaptation to thrive in host-associated niches, which not only facilitates its survival but may also influence its interactions with the host microbiome. This interplay could have implications for both microbial community dynamics and host health, underscoring the importance of understanding this pathogen's role in the broader ecological context of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP017669.1 Bac0000301 Escherichia coli "Escherichia coli, a ubiquitous and well-studied microorganism, belongs to the family Enterobacteriaceae. This gram-negative, rod-shaped bacterium thrives in temperatures ranging from 7°C to 50°C, making it a mesophilic microbe. Its metabolism is heterotrophic, relying on organic compounds for energy and growth. E. coli is a chemoheterotroph, utilizing carbon-rich molecules as its energy source. This microbe produces energy through the process of cellular respiration, where it converts glucose into ATP. The E. coli genome has been extensively sequenced, revealing a single circular chromosome of approximately 4.6 million base pairs. The gram-negative staining pattern of E. coli is characterized by a thin peptidoglycan layer, which is surrounded by an outer membrane containing lipopolysaccharides. E. coli typically appears as a straight or slightly curved rod, measuring 2-4 μm in length and 0.5-1 μm in width. It has been isolated from various body sites in all possible species, including the human gut, urinary tract, and bloodstream. Oxygen preference for E. coli is facultative anaerobic, meaning it can grow in both aerobic and anaerobic environments, but prefers aerobic conditions. In hosts, E. coli plays a crucial role in the human gut microbiome, aiding in nutrient absorption and immune system development. In the environment, E. coli can contaminate food and water, causing gastrointestinal illnesses in humans. Despite its potential pathogenicity, E. coli has also been engineered for biotechnological applications, such as the production of recombinant proteins and biofuels. Furthermore, studies on E. coli have led to a deeper understanding of bacterial physiology, genetic regulation, and molecular biology, making it a valuable model organism in scientific research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP010877.1 Bac0000302 Escherichia coli str. 14EC029 "Escherichia coli str. 14EC029 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli str. 14EC029 can utilize oxygen when available but is also capable of anaerobic metabolism, allowing it to survive in varied oxygen levels within its host environment.↵↵The ability of E. coli str. 14EC029 to exist in both aerobic and anaerobic conditions may provide it with a competitive advantage in diverse niches within the gastrointestinal tract of its host. This versatility supports its role in nutrient absorption and metabolism, as it can adapt its metabolic processes according to the availability of oxygen. Understanding the specific traits of E. coli str. 14EC029 contributes to the broader knowledge of microbial interactions in host systems, highlighting the importance of such strains in maintaining the balance of the microbial ecosystem within the gut." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP024141.1 Bac0000303 Escherichia coli str. 256 "Escherichia coli str. 256 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which is indicative of its adaptation to warm-blooded hosts, aligning with its habitat as a host-associated microbe. E. coli str. 256 exhibits facultative anaerobic respiration, allowing it to survive in both aerobic and anaerobic environments, a trait that enhances its versatility in various ecological niches within the host. ↵↵This adaptability may facilitate its role in the gut microbiome, where it can contribute to digestive processes while competing with other microorganisms. E. coli is known for its ability to metabolize a wide range of substrates, which may reflect its evolutionary success in diverse host-associated environments. Understanding the traits of E. coli str. 256 not only contributes to our knowledge of this specific strain but also highlights the ecological complexities of intestinal microbiota, where such bacteria play crucial roles in maintaining host health and influencing metabolic pathways." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CM007610.1 Bac0000304 Escherichia coli str. 28RC1 "Escherichia coli str. 28RC1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the normal body temperature of many host organisms, suggesting a potential adaptation to life within a host-associated habitat. As a facultative anaerobe, E. coli str. 28RC1 can survive in both aerobic and anaerobic environments, allowing it to exploit a diverse range of ecological niches within the host. ↵↵The structural characteristics of this strain, such as its rod shape and specific cell arrangement, may contribute to its interactions within the host environment. The ability to form pairs could facilitate cellular communication or biofilm formation under certain conditions, enhancing its survival and functionality within the host. ↵↵This strain exemplifies the metabolic versatility and adaptability often seen in E. coli, emphasizing its potential role in various host-associated ecosystems. Understanding these traits may provide insights into the ecological dynamics and functional roles that E. coli str. 28RC1 plays in its specific habitat, which could be crucial for deciphering its interactions with both the host and other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP015020.1 Bac0000305 Escherichia coli str. 3234/A "Escherichia coli strain 3234/A is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 3234/A can grow in both aerobic and anaerobic environments, allowing it to exploit a variety of ecological niches within host organisms. ↵↵The ability to grow in diverse oxygen conditions suggests that E. coli strain 3234/A may play a role in various metabolic processes within the host, potentially influencing host physiology and microbial community dynamics. This adaptability may also facilitate its survival in fluctuating environments, such as the gastrointestinal tract, where oxygen levels can vary significantly. Overall, the traits of E. coli strain 3234/A highlight its ecological versatility and its potential impact on host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LCVH00000000.1 Bac0000306 Escherichia coli str. 3385 "Escherichia coli str. 3385 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as individual cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat. E. coli str. 3385 is classified as a facultative anaerobe, indicating its capacity to grow in both the presence and absence of oxygen. ↵↵The ability to adapt to varying oxygen conditions may provide this strain with a metabolic flexibility that is advantageous in diverse environments, particularly within host organisms. While the specific ecological role of E. coli str. 3385 is not detailed, the general adaptability of E. coli species to the gastrointestinal tract of mammals suggests potential involvement in nutrient processing or microbial community dynamics. Understanding the precise interactions and functions of E. coli str. 3385 within its host could offer insights into microbial ecology and host-microbe interactions, which are crucial for maintaining gut health and homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029420.1 Bac0000307 Escherichia coli str. 94-3024 "Escherichia coli strain 94-3024 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli 94-3024 can metabolize in both aerobic and anaerobic conditions, allowing it to occupy diverse niches within the gastrointestinal tract and other host environments.↵↵The facultative anaerobic nature of this strain may provide advantages in fluctuating oxygen levels commonly encountered in biological systems. Its rod shape and ability to exist in pairs or as single cells contribute to its versatility in colonization and survival within host tissues. Understanding the physiological traits of E. coli 94-3024 can be important for elucidating its role in host-associated environments, where it may interact with other microbial communities and influence nutrient cycling.↵↵The adaptability of Escherichia coli strain 94-3024 to its host-associated habitat underscores its potential involvement in complex microbial interactions, which may impact the overall health and function of the host's microbiome. These traits highlight the importance of studying individual strains to better understand their ecological roles and contributions to host-microbe dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP009107.1 Bac0000308 Escherichia coli str. B7S79 "Escherichia coli str. B7S79 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the normal body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli str. B7S79 has the capability to grow in both aerobic and anaerobic environments, allowing it to exploit a variety of niches within the gastrointestinal tract of its hosts.↵↵The ability to inhabit a host-associated environment suggests that E. coli str. B7S79 may play a role in the complex microbial ecosystems found within the intestines, potentially contributing to nutrient metabolism and the maintenance of gut homeostasis. Its Gram-negative cell wall structure may also confer certain advantages, such as resistance to some antimicrobial agents, which could influence its interactions with both the host immune system and other microbial inhabitants. Understanding the specific roles and interactions of E. coli str. B7S79 in its ecological niche could provide valuable insights into microbial dynamics and host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SJSV00000000.1 Bac0000309 Escherichia coli str. CRE10 "Escherichia coli strain CRE10 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that corresponds to the average body temperature of warm-blooded hosts, indicating its adaptation to host-associated habitats. As a facultative anaerobe, E. coli CRE10 can grow in both the presence and absence of oxygen, allowing it to inhabit various microenvironments within its host.↵↵The strain's Gram-negative status suggests the presence of a distinctive outer membrane, which may contribute to its resilience in diverse ecological niches. E. coli strains are commonly found in the intestines of warm-blooded organisms, where they play a role in nutrient absorption and gut health. However, the specific ecological role of CRE10 within its host remains to be fully elucidated.↵↵Understanding the growth conditions and physiological properties of E. coli CRE10 can provide insights into its potential interactions within the microbial community of its host, as well as its adaptability to different environmental conditions. This adaptability may influence its role in digestive processes or its response to competitive microbial populations within the gut ecosystem. Overall, the traits of E. coli CRE10 highlight its versatility and potential significance in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP034405.1 Bac0000310 Escherichia coli str. E4223 "Escherichia coli str. E4223 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of many warm-blooded hosts, indicating a potential adaptation to a host-associated habitat. E. coli str. E4223 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions, which further supports its versatility in various host environments.↵↵The strain's association with host organisms suggests that it may play a role in the microbiota of the intestinal tract, contributing to essential metabolic functions or interactions with the host immune system. This adaptability to different oxygen levels may facilitate its survival in diverse microenvironments within the host, including those that experience fluctuations in oxygen availability. ↵↵Understanding the traits of E. coli str. E4223 can provide insights into its ecological role, particularly in how it might influence host health or contribute to the microbial community dynamics within the gastrointestinal tract. As a member of the E. coli species, this strain may also help elucidate the complexities of host-microbe interactions, particularly in terms of nutrient utilization and microbial competition." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSOO00000000.1 Bac0000311 Escherichia coli str. ECONIH1 "Escherichia coli str. ECONIH1 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells, demonstrating a facultative anaerobic metabolism. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of its host-associated habitat. As a member of the diverse E. coli species, ECONIH1 is adapted to living in close association with hosts, suggesting a role in symbiotic or commensal relationships. ↵↵The facultative anaerobic nature of E. coli str. ECONIH1 allows it to adapt to varying oxygen levels within its environment, thus enhancing its survival and metabolic versatility. Such adaptability might be crucial for its persistence in the dynamic microenvironments of the gastrointestinal tract, where fluctuations in oxygen concentration can occur. ↵↵Understanding the traits of E. coli str. ECONIH1 contributes to broader ecological insights into microbial interactions within host systems, particularly in how various strains of E. coli may fulfill specific roles in nutrient cycling and maintain host health. The ability of E. coli to thrive in diverse environments while engaging in complex interactions with its host may highlight its importance in both ecological and microbiological studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP009861.1 Bac0000312 Escherichia coli str. G8 "Escherichia coli str. G8 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist as single cells or in pairs. This microbe thrives optimally at a temperature of 37.0°C, a condition that aligns with the typical body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli str. G8 can survive in both aerobic and anaerobic environments, enhancing its versatility in various biological contexts.↵↵The presence of E. coli strains in diverse habitats, particularly within the intestines of mammals, underscores their role in the microbial ecology of host organisms. E. coli str. G8's facultative anaerobic metabolism allows it to efficiently utilize the available substrates in the host's gut, contributing to nutrient cycling and digestion. This metabolic versatility may also play a role in the microbe's interactions with the host immune system, potentially influencing the overall microbial community dynamics.↵↵In summary, E. coli str. G8 represents a well-adapted member of the E. coli species, showcasing traits that facilitate its survival and function within host-associated environments, while also reflecting its potential contributions to microbial interactions in the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 JPKL00000000.1 Bac0000313 Escherichia coli str. ICBECG2 "Escherichia coli str. ICBECG2 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, suggesting an adaptation to a host-associated habitat. As a facultative anaerobe, E. coli str. ICBECG2 possesses the ability to grow in both aerobic and anaerobic environments, allowing it to exploit a variety of ecological niches within the host. ↵↵The adaptability of this strain to different oxygen conditions may confer advantages in diverse physiological environments encountered within the host, potentially influencing its metabolic activity and interactions with the host's microbiota. This trait, combined with its optimal growth temperature, underscores the potential for E. coli str. ICBECG2 to play a role in the complex dynamics of host-associated microbial communities, possibly contributing to nutrient cycling or influencing host health. Further research could elucidate its specific contributions to the microbiome and its interactions with other microbial species within its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PEDQ00000000.2 Bac0000314 Escherichia coli str. JPH493 "Escherichia coli strain JPH493 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli JPH493 can grow in both aerobic and anaerobic environments, allowing it to exploit various niches within its host's gastrointestinal tract.↵↵The ability to grow in diverse oxygen conditions suggests a metabolic flexibility that may enhance its survival and competitiveness in the complex microbial community typically residing in hosts. This characteristic is particularly relevant in the context of the gut microbiome, where fluctuating oxygen levels can occur. The rod shape and arrangement in pairs or singles may also contribute to its motility and colonization capabilities, facilitating interactions within its host environment.↵↵Overall, the traits of E. coli strain JPH493 underline its role as a versatile inhabitant of host-associated ecosystems, potentially contributing to the dynamic interactions that characterize microbial communities in health and disease. The strain exemplifies the adaptability of E. coli as a model organism in microbiological research, particularly in studies related to host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LSNZ00000000.1 Bac0000315 Escherichia coli str. N11-1317 "Escherichia coli strain N11-1317 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement primarily in pairs and singles. This strain thrives at an optimal temperature of 37.0°C, which aligns with the typical physiological temperature of its host-associated habitat. As a facultative anaerobe, E. coli N11-1317 possesses the metabolic versatility to survive in both aerobic and anaerobic environments, enabling it to adapt to various conditions within its host.↵↵The host-associated habitat of E. coli N11-1317 suggests a close relationship with its environment, likely influencing its metabolic pathways and interactions with the host's microbiota. This adaptability may play a crucial role in its survival, allowing it to exploit different resources and niches within the host. Such characteristics underscore the importance of E. coli strains in understanding microbial dynamics and host-microbe interactions. Further research on E. coli N11-1317 could provide valuable insights into its ecological roles and potential applications in biotechnology or medicine, particularly in the context of microbial ecology within host systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MPGQ00000000.1 Bac0000316 Escherichia coli str. NGE-022 "Escherichia coli strain NGE-022 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli NGE-022 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, which further supports its versatility in various host-associated niches.↵↵The ability to thrive in host-associated habitats suggests that E. coli NGE-022 may play a role in the microbial community of its host, potentially contributing to processes such as digestion or nutrient cycling. Given its facultative anaerobic nature, this strain may also be capable of surviving in fluctuating oxygen levels, which can occur in different parts of the host's gastrointestinal tract. This adaptability might provide E. coli NGE-022 with a competitive advantage in colonizing diverse environments within the host, enhancing its ecological fitness in the microbial ecosystem. Further study of this strain could elucidate its specific functional interactions within the host microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QFXA00000000.1 Bac0000317 Escherichia coli str. NUBRI-E "Escherichia coli strain NUBRI-E is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli NUBRI-E has an optimal growth temperature of 37.0 °C, which aligns with the physiological temperature of many mammalian hosts, suggesting a potential adaptation for survival within host-associated habitats.↵↵The ability of E. coli NUBRI-E to inhabit host-associated environments reflects its versatile metabolic capabilities, allowing it to utilize various substrates for energy production. This adaptability may enhance its survival in diverse ecological niches, particularly within the gastrointestinal tracts of warm-blooded animals. The facultative anaerobic nature of this strain further implies that it can efficiently switch between aerobic respiration and fermentation, providing a competitive advantage in fluctuating oxygen conditions commonly found in host environments.↵↵Understanding the traits of E. coli NUBRI-E can offer insights into its role in microbial communities associated with hosts, where it may contribute to essential processes such as nutrient cycling and maintaining gut homeostasis. The strain's metabolic flexibility and optimal growth temperature suggest a sophisticated adaptation to host-associated life, highlighting the intricate relationships between microbial inhabitants and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SOYU00000000.1 Bac0000318 Escherichia coli str. PF9285 "Escherichia coli strain PF9285 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement predominantly in pairs and singles. This strain thrives optimally at a temperature of 37.0°C, which is characteristic of many mesophilic organisms, particularly those associated with warm-blooded hosts. As a facultative anaerobe, E. coli PF9285 possesses the metabolic versatility to utilize both aerobic and anaerobic respiration, allowing it to adapt to varying oxygen conditions within its host-associated habitat.↵↵The ecological niche of E. coli PF9285 underscores its potential role in host microbiomes, where it may contribute to essential processes such as nutrient metabolism and gut homeostasis. The ability of this strain to grow in both oxygen-rich and oxygen-depleted environments suggests that it can occupy diverse microenvironments within the host, potentially influencing microbial community dynamics. This adaptability not only highlights the metabolic resilience of E. coli PF9285 but also emphasizes its significance in the complex interactions that occur within host-associated microbial ecosystems. Further research may elucidate the specific functions and interactions of this strain within its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP038791.1 Bac0000319 Escherichia coli str. SP-16 Combo "Escherichia coli strain SP-16 Combo is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as individual cells. This strain is adapted to a host-associated habitat, indicating a potential association with specific biological environments, such as the gastrointestinal tract of animals or humans. E. coli SP-16 Combo demonstrates facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and low-oxygen conditions, which is a common characteristic of many E. coli strains. ↵↵The optimal growth temperature for E. coli SP-16 Combo is 37.0 °C, which is consistent with the physiological temperature of warm-blooded hosts, further emphasizing its adaptation to a host-associated lifestyle. This temperature preference suggests that E. coli SP-16 Combo may play a role in the microbial community dynamics within its host environment, potentially influencing nutrient cycling and microbial interactions.↵↵Understanding the traits of E. coli SP-16 Combo can offer insights into its ecological roles, particularly in relation to its interactions with the host's immune system and other microbial species. Its facultative anaerobic nature may provide it with a competitive advantage in fluctuating oxygen conditions within the host, contributing to its persistence and adaptability in complex microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 POSU00000000.1 Bac0000320 Escherichia coli str. ZRUEC59 "Escherichia coli strain ZRUEC59 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat. As a facultative anaerobe, E. coli str. ZRUEC59 is capable of growth in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its host. ↵↵The ability to survive in diverse oxygen conditions can aid in the organism's versatility and resilience in host environments, contributing to its presence in various biological niches associated with mammals. Understanding the specific traits of E. coli str. ZRUEC59 enhances our insight into its potential roles in microbial communities and its interactions with host organisms. This adaptability may play a significant role in nutrient cycling within host-associated ecosystems, highlighting the importance of E. coli strains in maintaining microbial diversity and functionality within their ecological frameworks." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QKMW00000000.1 Bac0000321 Hafnia alvei str. GB001 "Hafnia alvei str. GB001 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration, enabling it to thrive in both aerobic and anaerobic environments. This strain is notably isolated from a hot spring habitat, suggesting its potential adaptation to high-temperature conditions often present in such geothermal settings. The Gram-negative cell wall structure may confer specific advantages in terms of resilience to environmental stressors, such as variations in temperature and chemical composition characteristic of hot springs.↵↵Facultative anaerobes like Hafnia alvei str. GB001 possess the metabolic flexibility to utilize oxygen when available, but can also ferment substrates in its absence, indicating a versatile ecological role. Its presence in a hot spring environment may implicate it in biogeochemical cycles, possibly influencing nutrient dynamics or microbial community interactions in this unique ecosystem. The ability to thrive in extreme environments highlights the adaptability of H. alvei str. GB001, suggesting it may possess unique metabolic pathways or enzymes that facilitate survival under thermal stress. Further investigation into its metabolic capabilities could reveal insights into the role of such microorganisms in extreme habitats and their potential applications in biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia alvei Negative Rod Facultative anaerobe hot spring 569 FMIQ00000000.1 Bac0000322 Klebsiella michiganensis "Klebsiella michiganensis is a Gram-negative, nonsporulating rod-shaped bacterium that primarily functions as a chemoheterotroph, utilizing organic compounds as its energy source. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical temperature of mammalian hosts. K. michiganensis exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment.↵↵This microbe is found in diverse habitats, suggesting a versatile ecological niche that may include soil, water, and potentially within the microbiota of plants or animals. The ability to grow in both aerobic and anaerobic conditions enhances its adaptability and survival across different environmental contexts.↵↵The presence of K. michiganensis in multiple habitats may indicate its role in organic matter decomposition and nutrient cycling, contributing to ecosystem dynamics. Further research could elucidate its specific ecological interactions and contributions to microbial communities, particularly in environments where organic substrates are abundant." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 UGJR00000000.1 Bac0000323 Klebsiella oxytoca "Klebsiella oxytoca is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, categorizing it as a facultative anaerobe and a chemoheterotroph. This organism is commonly found in various body sites, including the intestinal tract, respiratory system, and in some cases, the urinary tract of humans and animals.As a Gram-negative bacterium, K. oxytoca possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can provoke strong immune responses in hosts. Its rod shape contributes to its motility and ability to colonize various niches. Being mesophilic, K. oxytoca prefers moderate temperatures typically found in the human body, allowing it to thrive in warm environments. As a facultative anaerobe, it can grow in both the presence and absence of oxygen, providing it with a versatile metabolic capacity to exploit different environmental conditions.As a chemoheterotroph, K. oxytoca relies on organic compounds for its energy and carbon needs, which it derives from its host or the environment, making it a critical player in various ecosystems and a significant opportunistic pathogen.K. oxytoca holds clinical significance, particularly in hospital settings, where it can cause infections in immunocompromised individuals. It is also known for its role in the production of certain enzymes, such as extended-spectrum beta-lactamases (ESBLs), which confer resistance to multiple antibiotics, complicating treatment options. These characteristics make K. oxytoca both a vital component of the human microbiome and a formidable pathogen, underscoring the importance of understanding its biology for better health outcomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 NZ_CP017932.1 Bac0000324 Klebsiella ornithinolytica "Klebsiella ornithinolytica is a Gram-negative, non-sporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism, utilizing a variety of organic compounds as a chemoheterotrophic energy source. This species thrives optimally at 37.0°C, which aligns with the temperature range commonly found in mammalian hosts and environments influenced by human activity. ↵↵Klebsiella ornithinolytica is known to inhabit diverse ecological niches, indicating a broad adaptability to various habitats. Its ability to grow in both aerobic and anaerobic conditions allows it to exploit different environmental resources, enhancing its survival in fluctuating conditions. ↵↵The combination of its metabolic versatility and temperature preference suggests a potential role in nutrient cycling within its habitats, though specific ecological interactions remain to be fully elucidated. This characteristic adaptability may also provide insights into its relationships with other microbial communities, highlighting the importance of K. ornithinolytica in microbial ecology. Such traits indicate a potential for significant ecological contributions, particularly in environments rich in organic substrates." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella ornithinolytica Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 FKZO00000000.1 Bac0000325 Klebsiella planticola "Klebsiella planticola is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is classified as a facultative anaerobe. This species thrives optimally at a temperature of 37.0°C, suggesting it is well-adapted to warm-blooded hosts or environments influenced by human activity. Notably, Klebsiella planticola does not form spores, which may influence its survival strategies in various habitats.↵↵The ecological versatility of K. planticola is underscored by its presence in multiple habitats, indicating a capacity to exploit diverse environmental niches. As a facultative anaerobe, it can utilize both aerobic respiration and fermentation, allowing it to thrive in oxygen-rich and oxygen-poor environments. This adaptability not only enhances its survival in fluctuating conditions but also suggests potential roles in nutrient cycling within its ecosystems.↵↵The ability of Klebsiella planticola to occupy various ecological niches raises intriguing questions about its interactions within microbial communities. Its metabolic flexibility may enable it to influence the dynamics of microbial populations and contribute to the breakdown of organic matter in diverse environments, thereby playing a potentially significant role in ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella planticola Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 FLAC00000000.1 Bac0000326 Klebsiella pneumoniae str. kp18317 "Klebsiella pneumoniae strain kp18317 is a Gram-negative, rod-shaped bacterium that typically exists in chains, pairs, or as single cells. This strain does not undergo sporulation and thrives optimally at a temperature of 37.0°C, indicating its adaptation to warm-blooded hosts. As a chemoheterotroph, K. pneumoniae kp18317 derives its energy from organic compounds, which it metabolizes in the presence or absence of oxygen, reflecting its facultative anaerobic nature. ↵↵The primary habitat of this strain is host-associated environments, suggesting a close relationship with various host organisms, potentially including humans and other mammals. This association not only highlights its adaptability to different oxygen conditions but also points to its potential role in the microbiome of its host. ↵↵Given its environmental preferences and metabolic capabilities, K. pneumoniae kp18317 may play a significant role in nutrient cycling within host-associated ecosystems, contributing to the overall microbial diversity and functionality in these environments. Understanding the specific interactions and functions of this strain within its ecological niche may provide insights into its contributions to host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 573 VDGB00000000.2 Bac0000327 Klebsiella pneumoniae str. NUHL30457 "Klebsiella pneumoniae strain NUHL30457 is a Gram-negative, rod-shaped bacterium that typically occurs in chains, pairs, or as single cells. This strain is nonsporulating and exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is classified as a chemoheterotroph, utilizing organic compounds as an energy source, which is consistent with its habitat within host-associated environments.↵↵The optimal growth temperature for Klebsiella pneumoniae NUHL30457 is approximately 37.0°C, aligning with the body temperature of warm-blooded hosts, where it may reside. This temperature preference suggests that the strain is well adapted to life within a host organism, potentially influencing its ecological role in the microbiome or during interactions with hosts.↵↵Given its facultative anaerobic nature and association with host environments, Klebsiella pneumoniae NUHL30457 may play a significant role in the complex dynamics of microbial communities, particularly in the human microbiota, where it could contribute to nutrient cycling and metabolic processes. Its presence in host-associated habitats highlights the importance of understanding such strains in the context of microbial ecology and their potential implications in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 573 NZ_CP026587.1 Bac0000328 Klebsiella pneumoniae str. XJ-K1 "Klebsiella pneumoniae strain XJ-K1 is a Gram-negative, rod-shaped bacterium that typically exists in chains, pairs, or singly. This strain is nonsporulating and exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for K. pneumoniae XJ-K1 is 37.0°C, which corresponds to the average human body temperature, indicating its potential association with host organisms. As a chemoheterotroph, this bacterium derives energy from organic compounds, which supports its survival in host-associated habitats.↵↵Klebsiella pneumoniae is known for its versatility in adapting to various environmental conditions, particularly within host organisms, where it may play a role in complex microbial communities. The ability of K. pneumoniae XJ-K1 to form chains and pairs may facilitate interactions with other microorganisms and host cells, potentially influencing its ecological niche and interactions within the microbiome. This characteristic could provide insights into its role in microbial dynamics and the maintenance of homeostasis in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 573 NZ_CP032163.1 Bac0000329 Klebsiella variicola "Klebsiella variicola is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in all body sites of various species, including humans, animals, and plants, and is a Facultative Anaerobe. As a Gram-negative bacterium, Klebsiella variicola has a unique outer membrane structure that provides it with resistance to certain antibiotics and environmental stresses. Its rod shape allows it to move and colonize efficiently in different environments. The mesophilic temperature preference of Klebsiella variicola enables it to grow optimally in temperatures ranging from 20-45°C, making it a common inhabitant of warm and temperate regions. As a Chemoheterotroph, Klebsiella variicola relies on organic compounds for energy and carbon, which it obtains from its surroundings. Its presence in all body sites of various species highlights its adaptability and ability to thrive in diverse environments. The facultative anaerobic nature of Klebsiella variicola allows it to survive in both aerobic and anaerobic conditions, making it a resilient microorganism. Klebsiella variicola has been implicated in various diseases, including urinary tract infections, pneumonia, and sepsis, particularly in immunocompromised individuals. Its ability to form biofilms and produce virulence factors, such as adhesins and toxins, contributes to its pathogenicity. Notably, Klebsiella variicola has been found to have a significant impact on the production of nitrogen-fixing nodules in plant roots, highlighting its potential role in agriculture and ecosystem balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella variicola Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles 573 UWVP00000000.1 Bac0000330 Escherichia coli ISC56 "Escherichia coli ISC56 is a Gram-negative, rod-shaped bacterium that exhibits a versatile cell arrangement, existing as singles, pairs, or in chains. This strain is categorized as a nonsporulating organism, which suggests an adaptation to environments where sporulation is not necessary for survival. E. coli ISC56 is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic conditions, and it is a chemoheterotroph, relying on organic compounds for energy and carbon sources.↵↵The optimal growth temperature for E. coli ISC56 is 37.0 °C, which aligns with the typical physiological temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. This characteristic reinforces the notion that E. coli ISC56 is likely well-suited for life within the gastrointestinal tract of mammals, where it may play a role in nutrient processing and microbial community dynamics.↵↵In summary, the combination of its Gram-negative status, rod shape, and facultative anaerobic metabolism positions E. coli ISC56 as a significant microbe within host-associated environments, potentially contributing to the complex interactions within the microbiota. This underscores the importance of understanding such strains in the context of their ecological roles and their influence on host health and microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 573 CBWT000000000.1 Bac0000331 Klebsiella pneumoniae str. AHEPA1046 "Klebsiella pneumoniae strain AHEPA1046 is a Gram-negative, rod-shaped bacterium that typically exhibits cell arrangements in pairs, chains, or as single cells. This strain is classified as a nonsporulating organism and is optimized for growth at an environmental temperature of 37.0°C, which corresponds to the human body temperature, suggesting a close association with host environments. As a chemoheterotroph, K. pneumoniae AHEPA1046 derives its energy from organic compounds, enabling it to thrive in host-associated habitats. ↵↵Additionally, this strain is a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions. This metabolic versatility allows K. pneumoniae AHEPA1046 to adapt to various environments within the host, potentially contributing to its survival in diverse niches, such as in the gastrointestinal tract or other tissues. The combination of its morphological characteristics, energy acquisition strategy, and oxygen requirements underscores its ecological role as a versatile inhabitant of host-associated environments, where it may interact with the host microbiota and contribute to the overall microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 573 VEVL00000000.1 Bac0000332 Klebsiella pneumoniae subsp. ozaenae "Klebsiella pneumoniae subsp. ozaenae is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements such as chains, pairs, and singles. This nonsporulating organism is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. K. pneumoniae subsp. ozaenae is a chemoheterotroph, utilizing organic compounds as its energy source, which suggests a dependency on host-associated habitats for nutrient acquisition. ↵↵Optimal growth occurs at a temperature of 37.0°C, indicating a preference for warm-blooded hosts, which aligns with its association with human and animal hosts. The ecological niche of K. pneumoniae subsp. ozaenae highlights its role in the microbiota of the upper respiratory tract, particularly in conditions such as ozena, which is characterized by chronic nasal discharge and atrophy of the nasal mucosa. This specific habitat may facilitate its survival and adaptation to the host environment, underscoring the potential interplay between the microbe and the host's immune responses. Understanding the ecological role of K. pneumoniae subsp. ozaenae may provide insights into its interactions within the microbial community and its potential implications in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 574 UGLZ00000000.1 Bac0000333 Klebsiella terrigena "Klebsiella terrigena is a Gram-negative, rod-shaped bacterium that thrives in diverse environments, including fresh water, soil, milk, and various plant substrates. As a facultative anaerobe, K. terrigena has the metabolic flexibility to grow in both the presence and absence of oxygen, allowing it to adapt to fluctuating environmental conditions. ↵↵This bacterium is part of the broader Klebsiella genus, which is known for its ecological versatility and ability to inhabit a range of niches. K. terrigena's presence in fresh water and soil suggests its role in nutrient cycling and possible interactions with other microbial communities. Its ability to colonize milk and plant surfaces may also indicate its potential impact on agricultural systems and food microbiomes. ↵↵The adaptability of K. terrigena to various habitats highlights its significance in ecological processes, particularly in freshwater ecosystems, where it may contribute to the degradation of organic matter and the cycling of nutrients. Further studies could elucidate its specific roles in these environments and its interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella terrigena negative Rod facultative anaerobe Fresh water; milk; plants; soil 577 UICX00000000.1 Bac0000334 Morganella morganii str. MMsCG "Morganella morganii strain MMsCG is a Gram-negative, rod-shaped bacterium that thrives in natural environments, particularly in sewage. As a facultative anaerobe, this microbe possesses the ability to grow in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels typically found in its aquatic habitat. ↵↵The rod shape of M. morganii str. MMsCG enables efficient motility and nutrient absorption, which may be advantageous in the complex microbial communities present in sewage environments. The bacterium's capacity to survive in diverse conditions highlights its ecological versatility, suggesting a potential role in biogeochemical cycling within its habitat. Given its natural occurrence in sewage, M. morganii str. MMsCG may contribute to the breakdown of organic matter and play a role in nutrient recycling, thus influencing the dynamics of microbial populations in its environment. ↵↵Overall, the traits of M. morganii str. MMsCG underscore its adaptive strategies that facilitate survival in fluctuating environments, potentially impacting local ecosystems through its metabolic activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Rod Facultative anaerobe mesophilic natural environment; sewage 582 NRQY00000000.1 Bac0000335 Morganella morganii "Morganella morganii is a Gram-negative, rod-shaped bacterium that thrives at moderate temperatures (mesophilic) and is classified as a chemoheterotroph, relying on organic compounds for its nutritional needs. This versatile microbe is commonly found in diverse environments, including the intestinal tracts of humans and animals, as well as in soil and water, showcasing its ability to inhabit various body sites and ecological niches. As a Gram-negative organism, Morganella morganii possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which play a significant role in its pathogenicity and resistance to certain antibiotics. Its rod shape facilitates motility and colonization in host environments. Being mesophilic, it optimally grows at temperatures ranging from 30°C to 37°C, which coincides with the typical human body temperature, making it an effective pathogen in humans. As a chemoheterotroph, Morganella morganii derives energy and carbon from organic compounds, often utilizing amino acids and organic acids found in its environment. Its facultative anaerobic nature allows it to survive in both aerobic and anaerobic conditions, making it adaptable to varying oxygen levels during infections or in environmental settings. Morganella morganii is primarily known for its role in human pathology, particularly as an opportunistic pathogen. It can be responsible for urinary tract infections, wound infections, and bacteremia, especially in immunocompromised individuals. In addition to its clinical significance, it is capable of producing urease, an enzyme that facilitates the hydrolysis of urea into ammonia, potentially leading to alkaline urine and stones in the urinary tract. Overall, Morganella morganii's adaptability, pathogenic potential, and enzymatic abilities highlight its importance in both clinical microbiology and environmental ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Rod Facultative anaerobe mesophilic natural environment; sewage 582 PDLE00000000.1 Bac0000336 Proteus mirabilis "Proteus mirabilis is a clinically significant Gram-negative, rod-shaped bacterium that thrives in a mesophilic environment with an optimal temperature range of 25-37°C. As a facultative chemoheterotroph, it derives its energy by oxidizing organic compounds in the presence of oxygen, but can also grow anaerobically using fermentation. Its energy production is achieved through the process of glycolysis, where glucose is converted into pyruvate, generating ATP and NADH. Proteus mirabilis is a Gram-negative organism, characterized by an outer membrane and a thin peptidoglycan layer, distinguishing it from Gram-positive bacteria. It has a typical rod-shaped morphology, with lengths ranging from 0.5 to 1.5 μm and widths of 0.5-0.8 μm. As a ubiquitous microbe, Proteus mirabilis can be found in various body sites, including the respiratory tract, skin, and gastrointestinal tract, as well as in soil, water, and clinical environments. It is an opportunistic pathogen that can cause urinary tract infections, pneumonia, and wound infections in compromised hosts. In terms of oxygen preference, Proteus mirabilis is a facultative anaerobe, capable of growing in both aerobic and anaerobic conditions. It can thrive in the presence of oxygen, but can also survive in low-oxygen environments by utilizing alternative metabolic pathways. One of the notable characteristics of Proteus mirabilis is its ability to produce copious amounts of slime, which helps it adhere to surfaces and evade host immune responses. It also exhibits the ability to form biofilms, complex communities of microorganisms attached to a surface, conferring increased resistance to antibiotics and immune clearance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus mirabilis Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Free living Nonsporulating 584 NEYX00000000.2 Bac0000337 Proteus vulgaris Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus vulgaris digestive tract; handsets of telephone booths; meat; milk 585 CVRZ00000000.1 Bac0000338 Providencia rettgeri "Providencia rettgeri is a gram-negative, rod-shaped bacterium classified as a facultative anaerobe that thrives within moderate temperature ranges and is considered a chemoheterotroph. This versatile microbe is commonly isolated from a variety of body sites, particularly in the gastrointestinal tract of humans and animals, as well as in environmental samples such as soil and water. The gram-negative nature of P. rettgeri indicates its cell wall comprises a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its pathogenic potential. Its rod shape provides a structural advantage in navigating through various environments. Being a facultative anaerobe allows P. rettgeri to adapt to both aerobic and anaerobic conditions, relying on oxygen when available for respiration, but able to switch to fermentation processes in its absence. This adaptability is crucial for survival in diverse ecological niches, including the human gut. As a chemoheterotroph, P. rettgeri derives its energy and carbon from organic compounds, which it metabolizes to support its growth and reproduction. This bacterium is known for its role in human infection, particularly urinary tract infections (UTIs), and can also be involved in wound infections. It produces urea and is capable of hydrolyzing urea, contributing to its colonization and persistence in the urinary tract. Beyond its pathogenicity, P. rettgeri is of particular interest in biochemical research due to its unique enzymatic capabilities, including those involved in amino acid metabolism and urease production, which are critical for understanding microbial ecology and evolution in diverse environments. Its ability to tolerate varied oxygen levels and organic substrates reflects its significant role in the microbiome and its potential impact on human health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 587 NOWC00000000.1 Bac0000339 Providencia rettgeri str. PrsM19 "Providencia rettgeri strain PrsM19 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe that thrives optimally at 37.0°C. As a chemoheterotroph, this microbe utilizes organic compounds as its energy source, allowing it to adapt to various habitats. The ability to grow in both aerobic and anaerobic conditions enhances its ecological versatility, suggesting a capacity to exploit diverse environmental niches. ↵↵This strain's facultative anaerobic nature indicates it can switch between aerobic respiration and fermentation, optimizing its energy production based on the availability of oxygen. Such metabolic flexibility may contribute to its survival in fluctuating environments, where oxygen levels can vary significantly. ↵↵In light of its broad habitat range, P. rettgeri strain PrsM19 may play a role in nutrient cycling within its ecosystems, potentially participating in the degradation of organic materials. Overall, the traits of strain PrsM19 reflect an organism well-adapted to dynamic ecological conditions, highlighting its potential significance in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 587 VEVM00000000.1 Bac0000340 Providencia stuartii "Providencia stuartii is a Gram-negative, rod-shaped bacterium that thrives in mesophilic environments, exhibiting a temperature preference between 20°C and 45°C. This microbe is classified as a heterotroph, relying on organic substances for nutrition, and demonstrates facultative anaerobic behavior, allowing it to survive in both oxygen-rich and oxygen-poor conditions. P. stuartii commonly colonizes various body sites, including the gastrointestinal tract, urinary tract, and occasionally the bloodstream, particularly in individuals with compromised immune systems. As a Gram-negative bacterium, P. stuartii possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its pathogenicity and resistance to certain antibiotics. Its rod shape enhances its motility, primarily due to flagella, facilitating movement in diverse environments. The mesophilic nature of this microbe indicates its adaptability to human body temperatures, making it a common isolate in clinical samples. P. stuartii's heterotrophic metabolism enables it to utilize various carbon sources for growth, playing a crucial role in its ability to thrive in different habitats. Its facultative anaerobic capability allows it to ferment nutrients in the absence of oxygen, promoting survival in the oxygen-depleted environments often found in the human gut or during infections.Furthermore, P. stuartii is recognized for its potential to cause urinary tract infections (UTIs) and other hospital-acquired infections, particularly in patients with indwelling catheters or those suffering from chronic illnesses. The bacterium's ability to form biofilms on medical devices adds to its virulence, making it a significant concern in healthcare settings. Its diverse biochemical capabilities facilitate the breakdown of various substrates, highlighting its ecological versatility and importance in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia stuartii Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 588 UGUB00000000.1 Bac0000341 Salmonella enterica subsp. enterica serovar Infantis "Salmonella enterica subsp. enterica serovar Infantis is a Gram-negative bacterium characterized by its spirilla shape and its tendency to form chains or exist as singles. This microbe is classified as a chemoorganotroph, utilizing organic compounds as its primary energy source. It thrives optimally at a temperature of 37.0°C, which aligns with the typical internal temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. ↵↵S. enterica serovar Infantis exhibits microaerophilic oxygen requirements, meaning it prefers environments with reduced oxygen levels, a characteristic that can influence its survival and proliferation within the gastrointestinal tracts of various hosts. This adaptation may enhance its competitive edge in the complex microbial ecosystems found in these environments.↵↵The ecological niche of S. enterica serovar Infantis suggests a potential role in the microbiota dynamics of host organisms, particularly in the context of nutrient cycling and interaction with other microbial species. Understanding its traits in relation to its habitat can provide insights into its ecological interactions and potential implications for host health and disease. Further investigation into its specific ecological roles and interactions within host-associated environments could illuminate its significance in both microbial ecology and public health contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 595 RSPH00000000.1 Bac0000342 Salmonella enterica subsp. enterica serovar Thompson "Salmonella enterica subsp. enterica serovar Thompson is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the formation of chains or singles in cell arrangement. It thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of many hosts, reflecting its adaptation to a host-associated habitat. As a chemoorganotroph, S. enterica serovar Thompson derives its energy from organic compounds, which is indicative of its nutritional requirements in a host environment.↵↵This serovar, like others within the Salmonella genus, is predominantly associated with gastrointestinal infections in various hosts, including humans and animals. Its ability to grow under microaerophilic conditions suggests a niche adaptation that may provide a competitive advantage in the oxygen-limited environments often found within the intestines of its hosts. ↵↵Furthermore, the presence of S. enterica serovar Thompson in a host-associated habitat underscores the potential for intricate interactions with the host microbiome, possibly influencing both microbial diversity and host health. Understanding the ecological roles of such bacteria can illuminate the dynamics of host-pathogen interactions and the broader implications for food safety and public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 600 RWBA00000000.1 Bac0000343 Salmonella enterica subsp. enterica serovar Heidelberg "Salmonella enterica subsp. enterica serovar Heidelberg is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as single cells. This microbe is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which aligns with its habitat as being host-associated. S. enterica serovar Heidelberg thrives optimally at 37.0°C, a temperature that corresponds to the typical body temperature of warm-blooded hosts, suggesting an adaptation to life within a host organism.↵↵The microaerophilic nature of this bacterium implies that it requires reduced levels of oxygen for growth, which may reflect its ecological niche within the host environment where oxygen levels can be limited. Such adaptations not only facilitate its survival in specific niches but also potentially influence its interactions with the host's immune system and the microbiome.↵↵Understanding the physiological traits of S. enterica serovar Heidelberg provides insights into its potential roles in host-associated ecosystems. The combination of its shape, energy acquisition strategy, and temperature preference reinforces its specialization for life within a host, where it may contribute to both symbiotic and pathogenic interactions, depending on the context. This intricate relationship underscores the significance of environmental conditions in shaping the behavior and survival strategies of microbial species." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 611 VCIQ00000000.1 Bac0000344 Serratia marcescens str. MSU97 "Serratia marcescens str. MSU97 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, showcasing its adaptability to a variety of ecological niches. This versatility allows S. marcescens str. MSU97 to inhabit diverse environments, making it a common member of various microbial communities.↵↵The facultative anaerobic nature of S. marcescens str. MSU97 enables it to grow in both aerobic and anaerobic conditions, providing it with a competitive advantage in fluctuating environments where oxygen availability may vary. This characteristic may facilitate its survival in diverse habitats, ranging from soil to water sources, where it can utilize different organic substrates for growth. ↵↵The ability of S. marcescens str. MSU97 to thrive at a body temperature of 37.0°C suggests a potential association with warm-blooded hosts or environments that mimic such conditions, further indicating its ecological versatility. Understanding the metabolic capabilities and ecological adaptability of this strain may provide insights into its role within microbial communities and its potential interactions with other microorganisms in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 MJAO00000000.1 Bac0000345 Serratia marcescens str. B3R3 "Serratia marcescens str. B3R3 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, thriving optimally at 37.0°C. As a chemoheterotroph, this strain utilizes organic compounds as its energy source, allowing it to inhabit a variety of environments. The nonsporulating nature of S. marcescens str. B3R3 indicates that it relies on other survival strategies rather than endospore formation to withstand unfavorable conditions.↵↵This microbe is part of a genus known for its adaptability and diverse ecological niches, often found in soil, water, and as part of the microbiota in various organisms. The ability to grow in both aerobic and anaerobic conditions enhances its survival and proliferation across different habitats. Its metabolic versatility enables S. marcescens str. B3R3 to exploit a range of organic substrates, which may provide insights into its role in nutrient cycling within its ecosystems.↵↵Understanding the traits of S. marcescens str. B3R3 emphasizes the importance of studying its ecological interactions, particularly in environments where organic matter is abundant. This adaptability suggests that the bacterium may play a significant role in the decomposition processes and nutrient dynamics of its habitats, contributing to the overall microbial community structure and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 NZ_CP013047.2 Bac0000346 Serratia marcescens str. SM03 "Serratia marcescens strain SM03 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism as a chemoheterotroph. This strain is part of a diverse group of microbes known for their adaptability to various habitats, suggesting a broad ecological versatility. As a facultative anaerobe, S. marcescens SM03 can grow in both the presence and absence of oxygen, allowing it to exploit a wide range of environmental conditions for survival and growth.↵↵The ability to utilize different energy sources as a chemoheterotroph further enhances its ecological adaptability, enabling it to thrive in multiple environments, including soil, water, and potentially within host organisms. This metabolic flexibility may confer competitive advantages in diverse ecological niches, where it can outcompete other microorganisms for resources. Furthermore, the nonsporulating nature of this strain indicates that it relies on other survival strategies rather than forming spores to endure unfavorable conditions.↵↵In summary, Serratia marcescens str. SM03 exemplifies the ecological resilience of certain microorganisms, highlighting the importance of metabolic versatility in adapting to varied environmental conditions. This adaptability may play a significant role in its interactions within microbial communities, influencing nutrient cycling and ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 LZOB00000000.1 Bac0000347 Shigella boydii "Shigella boydii is a Gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25°C to 37°C, categorizing it as mesophilic. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically fermenting sugars, in the absence of light. This process yields lactic acid, ethanol, and carbon dioxide as byproducts. S. boydii is an anaerobic microbe, unable to tolerate oxygen and grows optimally in environments devoid of oxygen. The microbe's cell wall exhibits a characteristic Gram-negative staining pattern, comprising an outer membrane and a peptidoglycan layer. In terms of shape, S. boydii is a non-sporulating, non-motile rod, typically measuring 0.5-0.9 μm in width and 1.5-3.5 μm in length. It is found in various body sites, including the gastrointestinal tract, urinary tract, and genitourinary system, in humans as well as certain animal species. S. boydii is an obligate anaerobe, requiring a strictly anaerobic environment to grow and reproduce. It is capable of producing a variety of enzymes, including lactate dehydrogenase, pyruvate kinase, and phosphofructokinase, which facilitate its metabolic processes. Shigella boydii is a significant human pathogen, causing shigellosis, a diarrheal disease characterized by watery stools, fever, and abdominal cramps. The bacterium is highly infectious, with a single dose of as few as 10-100 bacteria sufficient to cause infection. It is often transmitted through contaminated food, water, or direct contact with an infected individual. Despite its pathogenic nature, S. boydii has contributed significantly to our understanding of bacterial metabolism and physiology. Its unique ability to thrive in anaerobic environments has made it a valuable model organism for studying anaerobic metabolism and the development of new antibiotics targeting anaerobic pathogens." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella boydii Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 621 PUGO00000000.1 Bac0000348 Shigella dysenteriae "Shigella dysenteriae is a category B select agent, a Gram-negative, non-motile, rod-shaped bacterium that belongs to the family Enterobacteriaceae. It has a thermophilic temperature preference, thriving in temperatures between 35°C to 40°C (95°F to 104°F). S. dysenteriae is a Heterotroph, utilizing organic compounds as its energy source. Its energy production occurs through the process of fermentation, where it breaks down glucose and other sugars to produce ATP. The bacterium is stained Gram-negative, indicating the presence of a thin peptidoglycan layer in its cell wall. S. dysenteriae possesses a rod-shaped morphology, with a length of approximately 1-3 μm and a width of 0.5-1 μm. It can be found in the gastrointestinal tracts of humans and primates, colonizing the colonic mucosa and causing severe diarrhea, dysentery, and potential life-threatening complications. S. dysenteriae is an obligate anaerobe, requiring a low-oxygen environment to survive and multiply. It is unable to grow in the presence of oxygen and is susceptible to oxidative stress. However, in the absence of oxygen, it thrives, utilizing anaerobic respiration to generate ATP. Shigella dysenteriae is responsible for causing shigellosis, a highly infectious and debilitating disease that affects millions worldwide. It is transmitted through the fecal-oral route, where contaminated food, water, or surfaces are ingested. Infection with S. dysenteriae can lead to severe symptoms, including abdominal cramps, fever, bloody stools, and dehydration. Notably, S. dysenteriae is endemic in many parts of the world, particularly in areas with poor sanitation, poor hygiene, and inadequate access to healthcare. The bacterium's high infectivity, coupled with its ability to adapt to different environments, makes it a significant public health concern. The development of effective vaccines and antimicrobial treatments is crucial in combating this highly infectious microbe." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella dysenteriae Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 622 UAUQ00000000.1 Bac0000349 Shigella sonnei str. 75/02 "Shigella sonnei str. 75/02 is a Gram-negative, rod-shaped bacterium that typically appears as single cells or in pairs. This strain optimally grows at a temperature of 37.0°C, which corresponds with the normal human body temperature, suggesting an adaptation to a host-associated habitat. As a chemoorganotroph, it derives energy from organic compounds, reflecting its reliance on a nutrient-rich environment often found within host organisms. Additionally, S. sonnei str. 75/02 is classified as a facultative anaerobe, indicating its capability to survive in both aerobic and anaerobic conditions, which may enhance its persistence in diverse microenvironments within the host.↵↵The ability of S. sonnei to thrive in the human gastrointestinal tract, coupled with its metabolic flexibility, positions it as a notable member of the enteric microbiota. Understanding these traits can provide insights into its survival strategies and potential interactions within the host, including its response to variations in oxygen availability and nutrient composition. This adaptability may contribute to its competitive edge in colonizing the gut, underscoring the importance of host-associated environments in shaping the physiological traits of pathogenic microbes like Shigella sonnei." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sonnei Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 624 NZ_CP019689.1 Bac0000350 Shigella sonnei "Shigella sonnei is a gram-negative, rod-shaped bacterium that thrives in a temperature range of 25-37°C, falling under the category of mesophiles. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically requiring a supply of nutrients from its environment. S. sonnei's energy production involves the breakdown of glucose and other carbon sources through fermentation, involving the conversion of glucose into lactate and ethanol as byproducts. The bacterium's cell wall is characterized by a gram-negative staining pattern, indicating the presence of a thin peptidoglycan layer and an outer membrane. Its rod-shaped morphology allows it to fit within the tight spaces of the human gut, where it can colonize and reproduce. S. sonnei is known to infect various body sites, including the gastrointestinal tract, urinary tract, and genital tract, making it a relevant pathogen in both humans and animals. Its ability to infect multiple sites is attributed to its ability to survive and replicate in a variety of environments. In terms of oxygen preference, S. sonnei is an obligate anaerobe, meaning it cannot tolerate oxygen and grows best in the absence of oxygen. This is reflected in its ability to inhibit the growth of other microorganisms that require oxygen, allowing it to dominate the environment. Shigella sonnei is often referred to as the most common cause of reported Shigella infections worldwide, with a global distribution. Its mode of transmission is primarily through the fecal-oral route, where infected individuals contaminate their environment with the bacterium, which is then ingested by others." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sonnei Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 624 CXEP00000000.1 Bac0000351 Yersinia bercovieri "Yersinia bercovieri is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells and its inability to form spores. This microbe is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments. Y. bercovieri demonstrates heterotrophic metabolism, relying on organic compounds as its energy source, which suggests a versatile adaptability to various nutrient sources in its habitat.↵↵The optimal growth temperature for Y. bercovieri is 28.0 °C, which positions it within a mesophilic range, conducive to its survival in diverse environments. The bacterium's ability to thrive in multiple habitats underscores its ecological versatility, likely enabling it to inhabit a variety of niches where organic matter is available. ↵↵Y. bercovieri's facultative anaerobic nature may contribute to its resilience in fluctuating environmental conditions, allowing it to exploit transiently available oxygen while also thriving in anaerobic settings. This adaptability may provide insights into its ecological roles in nutrient cycling and interactions with other microorganisms within its habitats. Understanding the ecological implications of Y. bercovieri's metabolic capabilities can offer valuable perspectives on its potential contributions to microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia bercovieri Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles Nonsporulating 630 CGBH00000000.1 Bac0000352 Yersinia enterocolitica "Yersinia enterocolitica is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures (optimum growth at 28-30°C), is classified as a chemoheterotroph, and is a facultative anaerobe, allowing it to thrive in various oxygen conditions. This microbe is known for its ability to inhabit multiple body sites in various species, particularly in the gastrointestinal tracts of humans and animals, especially swine. As a gram-negative organism, Y. enterocolitica possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contribute to its virulence and ability to evade the host immune response. The rod shape helps the microbe navigate its environment effectively, promoting adhesion to intestinal cells. Being a mesophilic organism means it is suited to grow at temperatures similar to those found in warm-blooded animals, which is crucial for its survival and proliferation within the host. Yersinia enterocolitica is a chemoheterotroph, relying on organic compounds for energy and carbon, making it dependent on the host's nutrients. As a facultative anaerobe, it can survive with or without oxygen, allowing it to adapt to various niches in the gastrointestinal tract where oxygen levels fluctuate.This bacterium is primarily known for causing yersiniosis, an enteric infection characterized by abdominal pain, diarrhea, and fever, often confused with appendicitis. Interestingly, Yersinia enterocolitica can also survive in contaminated food sources, particularly undercooked pork products, highlighting the importance of food safety and hygiene in preventing outbreaks. Its ability to form biofilms and resist environmental stresses makes it a resilient pathogen in both clinical and environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia enterocolitica Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles Nonsporulating 630 CGBR00000000.1 Bac0000353 Yersinia intermedia "Yersinia intermedia is a Gram-negative, rod-shaped bacterium that inhabits diverse environments, including freshwater ecosystems, marine environments, and even extreme habitats such as permafrost and Mars analog environments. This organism has been identified in various ecological niches, including lakes like Gr navatn, as well as in food sources, suggesting a versatile survival strategy that enables it to thrive in both aquatic and terrestrial settings. ↵↵Yersinia intermedia's adaptability to a range of habitats highlights its potential resilience to environmental changes, which may be particularly relevant in the context of climate change and habitat alteration. The presence of this bacterium in extreme environments, such as permafrost, invites further investigation into its metabolic capabilities and potential roles in nutrient cycling within these ecosystems. Understanding Yersinia intermedia's ecological interactions could provide insights into microbial life in extreme conditions and its implications for ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia intermedia negative Rod Yes environment; food; Fresh water; lake Gr navatn; Marine; Mars analog environments; permafrost 631 NHOI00000000.1 Bac0000354 Yersinia pestis "Yersinia pestis is a Gram-negative, rod-shaped bacterium classified as a facultative anaerobe and is typically found thriving at temperatures between 28°C and 37°C. As a chemoheterotroph, Y. pestis derives its energy from organic compounds, primarily from the host organisms it infects. This microbe is notably found in various body sites in host species, including lymph nodes, blood, and organs of mammals, particularly rodents, which serve as reservoirs for the bacterium. Gram staining reveals Y. pestis's characteristic pink coloration, signifying its thin peptidoglycan layer surrounded by an outer membrane composed of lipopolysaccharides. Its rod-shaped morphology allows it to efficiently invade host tissues. As a facultative anaerobe, Y. pestis can survive in both aerobic and anaerobic environments, enabling it to thrive in the tissues of its hosts, where oxygen availability may vary. The pathogenicity of Yersinia pestis is primarily attributed to its virulence factors, including the ability to evade the host's immune response through various mechanisms, such as capsule formation and the secretion of effector proteins that manipulate host cell processes. The bacterium is known for causing the deadly plague, which has historically led to significant pandemics, including the Black Death in the 14th century, drastically impacting human populations.Yersinia pestis is transmitted primarily through flea bites, which can rapidly facilitate its spread among rodent populations and, subsequently, to humans. Notably, Y. pestis can exist in sensory biofilms, enhancing its transmission efficiency and survival in harsh environmental conditions. Its adaptability and the various forms in which it can present (bubonic, septicemic, and pneumonic plague) reveal the complexities of its interaction with hosts and the environment, making it a significant concern in public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pestis Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 632 VEZV00000000.1 Bac0000355 Yersinia pseudotuberculosis "Yersinia pseudotuberculosis is a gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, classifying it as a mesophile. This microbe is a chemoheterotroph, deriving energy and carbon from organic compounds, and is characterized as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments. Y. pseudotuberculosis can be found in various body sites across different species, including the gastrointestinal tract of mammals, where it can inhabit both wild and domesticated animals, and occasionally infect humans. As a gram-negative organism, Y. pseudotuberculosis possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structure not only provides structural integrity but also plays a crucial role in the bacterium's pathogenicity, helping it evade the host immune response. The mesophilic nature of Y. pseudotuberculosis enables it to grow optimally at temperatures around 28-32°C, which is conducive for survival in the warm-blooded hosts it often infects. Y. pseudotuberculosis is known for causing a disease similar to tuberculosis in animals, particularly in the lymphatic system, when it infects the host. In humans, it can lead to a gastrointestinal infection that may result in symptoms ranging from mild diarrhea to severe abdominal pain, often mimicking appendicitis. This bacterium can be transmitted through contaminated food or water, highlighting its role as a public health concern. Strikingly, Yersinia pseudotuberculosis has an intriguing evolutionary history, being closely related to Yersinia pestis, the causative agent of plague. This relationship has led to ongoing studies on the genetic and virulence factors that enable Y. pseudotuberculosis to thrive in diverse environments, opening doors for potential therapeutic developments against its pathogenic relatives." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pseudotuberculosis Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 633 NZ_CP033713.1 Bac0000356 Arsenophonus nasoniae str. FIN Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Arsenophonus Arsenophonus nasoniae 638 NZ_CP038614.1 Bac0000357 Aeromonas hydrophila "Aeromonas hydrophila is a Gram-negative, rod-shaped bacterium that thrives in a wide range of temperatures, falling under the category of mesophilic microorganisms. It is a heterotroph, meaning it derives its energy by breaking down organic compounds rather than producing its own food through photosynthesis or chemosynthesis. A. hydrophila is a chemoheterotroph, utilizing organic matter as its energy source and reducing the carbon dioxide in the water to produce energy. This process is known as aerobic respiration, which requires oxygen. Microscopically, A. hydrophila appears as a rod-shaped bacterium, typically measuring between 1-5 μm in length. It is a ubiquitous microorganism, capable of colonizing various body sites, including the skin, respiratory tract, urinary tract, and gastrointestinal tract of humans and animals. A. hydrophila is an obligate aerobe, requiring the presence of oxygen to survive and multiply. It is also a mesophilic microorganism, thriving in temperatures ranging from 20-40°C. This temperature range is characteristic of many microorganisms that inhabit aquatic ecosystems, such as freshwater lakes, rivers, and streams, where A. hydrophila is often found. In the context of human health, A. hydrophila has been implicated in various infections, including gastroenteritis, septicemia, and wound infections. This microbe is also known to cause disease in fish and other aquatic animals, making it an important pathogen in the aquaculture industry. A. hydrophila has been studied extensively for its potential as a biotechnological agent, particularly in the production of extracellular enzymes and bioactive compounds. Its ability to produce a wide range of degradative enzymes, such as proteases, lipases, and cellulases, makes it a promising tool for bioremediation and biocatalysis applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 644 NZ_AP019193.1 Bac0000358 Aeromonas salmonicida str. O23A "Aeromonas salmonicida str. O23A is a Gram-negative, rod-shaped bacterium that serves as a heterotrophic organism, thriving in aquatic environments. This strain exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen levels within its habitat, which can include freshwater and marine ecosystems.↵↵As a heterotroph, A. salmonicida str. O23A relies on organic compounds for energy, utilizing a range of substrates that may be present in its aquatic surroundings. The ability to metabolize diverse organic material can confer a competitive advantage in fluctuating environmental conditions, where nutrient availability may vary.↵↵This strain's adaptability to both aerobic and anaerobic conditions suggests a versatile ecological role within aquatic ecosystems, potentially influencing nutrient cycling and microbial community dynamics. Understanding the metabolic capabilities and ecological interactions of A. salmonicida str. O23A can provide valuable insights into its role in aquatic microbiomes, where its presence may affect the health and balance of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 645 NZ_CP021658.1 Bac0000359 Aeromonas sobria str. JF2635 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sobria 646 LJZX00000000.1 Bac0000360 Aeromonas caviae str. R25-2 "Aeromonas caviae str. R25-2 is a Gram-negative bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in a variety of environments. This microbe is commonly found in aquatic habitats, including freshwater environments, as well as in compost systems and hospital settings, indicating its adaptability to diverse ecological niches. The presence of Aeromonas caviae in plant material compost piles suggests its potential role in organic matter decomposition and nutrient cycling within these ecosystems. ↵↵The facultative anaerobic nature of this strain enables it to utilize both aerobic and anaerobic respiration, depending on the availability of oxygen, thus enhancing its survival in fluctuating environmental conditions. This metabolic flexibility may contribute to its prevalence in environments where oxygen levels can vary, such as compost, where microbial communities engage in dynamic interactions. ↵↵Overall, the ecological versatility of Aeromonas caviae str. R25-2 highlights its potential importance in nutrient recycling processes in both natural and human-altered environments. Further research into its metabolic pathways and interactions within microbial communities could provide valuable insights into its ecological roles and applications in bioremediation or composting practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas caviae Negative Facultative anaerobe aquatic environments; compost; hospital; plant material compost pile 648 CP025777.1 Bac0000361 Aeromonas caviae "Aeromonas caviae is a gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classifying it as a mesophile. As a chemoheterotroph, it derives energy from organic compounds, making it reliant on external sources for both carbon and energy. This versatile microbe exhibits facultative anaerobic behavior, allowing it to grow in the presence or absence of oxygen, although it prefers aerobic conditions. Aeromonas caviae is commonly found in aquatic environments, including freshwater, brackish water, and marine ecosystems. It is present in the gastrointestinal tracts of various animals, particularly in the intestines of fish and amphibians, but it is also noted in humans, where it can inhabit the gastrointestinal tract and sometimes the skin or wounds. This broad habitat range reflects its adaptability and ecological significance. In terms of pathogenicity, Aeromonas caviae can be associated with gastroenteritis, particularly in individuals with compromised immune systems or underlying health conditions. The bacterium can produce virulence factors, including enterotoxins, which contribute to its ability to cause disease. Symptoms of infection may include diarrhea, abdominal pain, and in more severe cases, septicemia. Beyond its pathogenic potential, Aeromonas caviae plays a role in wastewater treatment processes, contributing to the breakdown of organic matter. Its presence in aquatic environments can also serve as a bioindicator for assessing water quality. The organism's ability to survive in diverse habitats underscores its ecological flexibility and importance in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas caviae Negative Facultative anaerobe aquatic environments; compost; hospital; plant material compost pile 648 JTBG00000000.2 Bac0000362 Aeromonas jandaei "Aeromonas jandaei is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, is classified as a chemoheterotroph, and is considered a facultative anaerobe. This microbe is part of the Aeromonas genus, which predominantly colonizes aquatic environments, including fresh and brackish waters, as well as in the gastrointestinal tracts of various animals, including humans.The Gram-negative characteristic indicates that Aeromonas jandaei possesses a thin peptidoglycan layer surrounded by an outer membrane, making it resistant to certain antibiotics and playing a role in its pathogenicity. Its rod shape contributes to its motility, which is facilitated by flagella, enabling it to navigate through diverse aquatic environments. As a mesophilic organism, A. jandaei prefers temperatures between 20°C and 37°C, making it well-adapted to its ecological niches.As a chemoheterotroph, A. jandaei derives energy from organic compounds, utilizing a range of substrates for growth. Its facultative anaerobic nature allows it to survive in both aerobic and anaerobic conditions, giving it a competitive edge in varied habitats. Within hosts, it can inhabit various body sites, contributing to conditions such as gastroenteritis, wound infections, and, less commonly, septicemia. Beyond its ecological and clinical significance, A. jandaei has been the subject of research due to its ability to produce various extracellular enzymes that play roles in bioremediation processes. This microbe not only underscores the complexity of aquatic microbial communities but also highlights the potential for both beneficial and harmful interactions with other organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas jandaei Negative Rod Facultative anaerobe 650 RQKB00000000.1 Bac0000363 Aeromonas schubertii str. ATCC 43700 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas schubertii 652 LPUO00000000.1 Bac0000364 Aeromonas veronii str. pamvotica "Aeromonas veronii str. pamvotica is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is primarily found in sediment environments, where it thrives as an aerobic organism, requiring oxygen for its metabolic processes. The rod shape and arrangement of this microbe may facilitate various interactions with its sedimentary habitat, potentially influencing nutrient cycling and microbial community dynamics.↵↵The presence of Aeromonas veronii in sediment suggests its role within aquatic ecosystems, where it may participate in the degradation of organic matter and the cycling of nutrients. Its ability to thrive in oxygen-rich conditions highlights its adaptability to diverse microenvironments within sediment layers. Understanding the ecological role of this strain could contribute to insights into sediment microbiology and the broader functioning of aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles Animal; Human 654 MRUI00000000.1 Bac0000365 Aeromonas veronii "Aeromonas veronii is a Gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classifying it as a mesophilic organism. As a heterotroph, it relies on organic compounds for energy and carbon, which it acquires through diverse means including the decomposition of organic material. This organism can be found in various body sites, particularly in aquatic environments, including freshwater and brackish water habitats, where it thrives alongside other microbes. Moreover, A. veronii is classified as a facultative anaerobe, allowing it to adapt to both aerobic and anaerobic conditions, thus enhancing its survival in fluctuating environments. The outer membrane of A. veronii contributes to its Gram-negative characteristic, providing an additional barrier against environmental stresses and antibiotics. Its rod shape enables motility through flagella, facilitating movement towards nutrient-rich environments. The mesophilic nature of this microbe means it grows optimally at temperatures between 20°C and 37°C, making it well-suited for environments that experience these temperature ranges. A. veronii is notable for its pathogenic potential in humans and animals, particularly in immunocompromised individuals. It can cause gastroenteritis and wound infections, primarily when introduced into the body through contaminated water or food sources. Additionally, this bacterium is recognized for its role in ecological nutrient cycling, contributing to the breakdown of organic materials in its aquatic habitats. Remarkably, A. veronii has been shown to produce enzymes that help it degrade pollutants, indicating its potential use in bioremediation efforts to clean contaminated water bodies." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles Animal; Human 654 SSUX00000000.1 Bac0000366 Aeromonas allosaccharophila str. CCM 4363 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas allosaccharophila 656 MRZP00000000.1 Bac0000367 Photobacterium angustum "Photobacterium angustum is a Gram-negative bacterium that inhabits marine environments, specifically found in the surface coastal waters of Botany Bay in Sydney, Australia. This microbe is obligately aerobic, relying on the presence of oxygen for its metabolic processes. ↵↵The ecological niche of P. angustum highlights its adaptation to coastal marine ecosystems, where it plays a role in the microbial community dynamics in these environments. The bacterium's presence in Botany Bay suggests its potential involvement in nutrient cycling and interactions with other marine organisms, contributing to the overall health and functionality of the coastal ecosystem. ↵↵Further research could elucidate the specific roles and interactions of P. angustum within the microbial community of Botany Bay, enhancing our understanding of its ecological significance in marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium angustum negative aerobic "Botany Bay; Marine; sea; surface coastal waters; surface coastal waters in Botany Bay (Sydney), Australia" 661 PYOL00000000.1 Bac0000368 Photobacterium angustum str. LC1-200 "Photobacterium angustum str. LC1-200 is a Gram-negative, aerobic bacterium isolated from the surface coastal waters of Botany Bay, a marine environment located in Sydney, Australia. This microbe thrives in the unique ecological niche provided by the coastal waters, reflecting its adaptation to the marine habitat. ↵↵As an aerobic organism, Photobacterium angustum str. LC1-200 requires oxygen for its metabolic processes, which suggests that it plays a role in the oxygen-rich surface layers of the water column. Its presence in Botany Bay indicates its potential involvement in biogeochemical cycles, particularly in processes related to nutrient cycling and organic matter decomposition in coastal marine ecosystems.↵↵The isolation of this strain from a specific geographic locale underscores the importance of local environmental conditions in shaping microbial communities. The adaptability of Photobacterium angustum str. LC1-200 to the dynamic conditions of a coastal ecosystem may provide insights into the resilience and functional diversity of marine bacteria in response to environmental changes. This adaptability highlights the significance of studying local microbial populations to understand their roles in coastal ecology and potential responses to anthropogenic influences." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium angustum negative aerobic "Botany Bay; Marine; sea; surface coastal waters; surface coastal waters in Botany Bay (Sydney), Australia" 661 MSCJ00000000.1 Bac0000369 Vibrio alginolyticus "Vibrio alginolyticus is a Gram-negative, facultative anaerobic bacterium that thrives in marine environments, with an optimal growth temperature of 30.0°C. This organism is commonly found in coastal waters and is part of the diverse microbial communities associated with marine ecosystems. Its ability to grow in varying oxygen conditions allows it to inhabit different niches within these environments, contributing to its ecological versatility.↵↵Vibrio alginolyticus plays a role in nutrient cycling in marine ecosystems, where it may participate in the degradation of organic matter. This trait highlights its potential importance in maintaining the health and stability of marine habitats. Additionally, its optimal growth temperature aligns with typical sea surface temperatures, suggesting that it is well-adapted to the warm, nutrient-rich waters often found in coastal regions.↵↵Overall, the physiological characteristics of Vibrio alginolyticus not only define its ecological role within marine systems but also underscore the adaptability of microbial life in response to environmental conditions. Its presence in diverse marine habitats emphasizes the significance of such microorganisms in the larger context of marine biodiversity and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus negative Yes facultative anaerobe 30 Marine 663 NZ_CP017910.1 Bac0000370 Vibrio alginolyticus str. ATCC 33787 "Vibrio alginolyticus str. ATCC 33787 is a Gram-negative, facultative anaerobic bacterium that thrives in marine environments, with an optimal growth temperature of 30.0°C. This strain is part of the Vibrio genus, which is recognized for its diverse ecological roles in aquatic ecosystems. As a facultative anaerobe, V. alginolyticus can utilize oxygen when available but is also capable of anaerobic respiration, allowing it to adapt to varying oxygen levels in its marine habitat.↵↵The marine habitat of V. alginolyticus str. ATCC 33787 not only supports its growth but also suggests potential interactions with other marine organisms, including fish and invertebrates. This strain's adaptability to both aerobic and anaerobic conditions may facilitate its survival in fluctuating environmental conditions, such as those found in estuaries or coastal regions where oxygen levels can change due to various ecological factors.↵↵Understanding the physiological traits of V. alginolyticus str. ATCC 33787 enhances our knowledge of its ecological niche and potential roles in nutrient cycling within marine ecosystems. The ability to thrive in diverse conditions highlights its significance in the microbial community dynamics of marine environments, where it may contribute to the decomposition processes or interact with other microorganisms, showcasing the complex interdependencies that exist within these ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus negative Yes facultative anaerobe 30 Marine 663 NZ_CP013484.1 Bac0000371 Vibrio cholerae str. VcCHNf4 "Vibrio cholerae strain VcCHNf4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions, and it relies on organic compounds as a heterotrophic energy source. The optimal growth temperature for VcCHNf4 is approximately 20.0 °C, which suggests a preference for cooler environments, potentially influencing its ecological niche.↵↵Vibrio cholerae strains, including VcCHNf4, inhabit a variety of habitats, indicating their adaptability to diverse ecological settings. This adaptability may allow the strain to occupy various niches, such as aquatic environments where it can associate with phytoplankton or other organic matter. The ability to grow under varying oxygen levels may also facilitate its survival in fluctuating conditions, highlighting the ecological versatility of this bacterium.↵↵Given these traits, Vibrio cholerae strain VcCHNf4 may play a role in nutrient cycling in its habitat, contributing to the breakdown of organic material and influencing microbial community dynamics. Further studies could elucidate its specific interactions within its ecological context, providing insights into its functional roles in the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWD00000000.1 Bac0000372 Vibrio cholerae str. VcCHNf5 "Vibrio cholerae strain VcCHNf5 is a Gram-negative, rod-shaped bacterium characterized by its single-cell arrangement and facultative anaerobic metabolism. This strain exhibits heterotrophic energy acquisition, indicating its reliance on organic compounds for growth. VcCHNf5 thrives optimally at a temperature of 20.0 °C, suggesting a preference for cooler environments, which may be reflective of its ecological niche.↵↵The habitat of Vibrio cholerae str. VcCHNf5 is described as multiple, suggesting adaptability to various ecological settings. This adaptability may play a crucial role in its survival and proliferation in diverse environments, potentially including aquatic ecosystems where nutrient availability can fluctuate. The facultative anaerobic nature of this strain allows it to survive in both aerobic and anaerobic conditions, further enhancing its ecological versatility.↵↵In summary, the traits of Vibrio cholerae str. VcCHNf5 emphasize its role as a heterotrophic organism that can thrive in cooler environments and adapt to varying oxygen levels. This adaptability may have significant implications for its interactions within microbial communities and its ability to exploit different ecological niches. Understanding these traits can provide insights into the ecological dynamics of Vibrio cholerae and its potential responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWE00000000.1 Bac0000373 Vibrio cholerae str. VN-2825 "Vibrio cholerae strain VN-2825 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments. As a heterotroph, V. cholerae str. VN-2825 relies on organic compounds as its energy source, which is indicative of its adaptability to various habitats. The optimal growth temperature for this strain is approximately 20.0°C, suggesting a preference for cooler environments, which may be relevant in understanding its ecological niche.↵↵Vibrio cholerae is commonly found in aquatic environments, including brackish waters and estuaries, where it can associate with phytoplankton and other organic materials. This association may play a critical role in the bacterium's survival and proliferation, as it can utilize the organic matter provided by these environments. The ability to exist as a single cell rather than in clusters or chains may also enhance its dispersal capabilities in diverse aquatic habitats, facilitating its colonization and adaptation to varying ecological conditions. ↵↵Overall, the traits of V. cholerae str. VN-2825 underscore its ecological versatility and highlight its potential interactions within aquatic ecosystems, which could be significant for understanding its role in nutrient cycling and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 MCBA00000000.1 Bac0000374 Vibrio paracholerae "Vibrio paracholerae is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits a facultative anaerobic metabolism, allowing it to thrive in various oxygen conditions. This microbe is classified as a heterotroph, meaning it derives its energy from organic compounds, which it likely encounters in its diverse habitats. V. paracholerae has an optimal growth temperature of approximately 20.0°C, suggesting a preference for cooler environments, which may influence its ecological niches.↵↵The presence of V. paracholerae in multiple habitats indicates its adaptability and potential for survival in varying environmental conditions. This versatility may contribute to its role in aquatic ecosystems, where temperature fluctuations and organic matter availability can create diverse microenvironments. The organism's ability to grow in both aerobic and anaerobic conditions further reflects its ecological resilience, allowing it to exploit different resources and possibly interact with other microbial communities in its surroundings. Understanding the ecological dynamics of V. paracholerae could provide insights into its functional roles within aquatic ecosystems and its potential interactions with other microorganisms and eukaryotic hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio paracholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 MWFL00000000.1 Bac0000375 Vibrio cholerae "Vibrio cholerae is a gram-negative, comma-shaped bacterium that thrives in warm temperatures, falling under the temperature preference category of ""Mesophilic"", with an optimal growth range of 15-35°C. As a chemoheterotroph, it derives its energy from the oxidation of organic compounds, specifically complex sugars and amino acids, which are broken down through cellular respiration. This process yields adenosine triphosphate (ATP), the primary energy currency of the cell. V. cholerae stains gram-negative, meaning its cell wall lacks a peptidoglycan layer. Its characteristic comma shape is a result of its curved, rod-like morphology, which can range in size from 1-6 μm in length and 0.5-1.5 μm in width. While it can be found in various body sites, including the human intestine, skin, and oral cavity, it is not typically present in every individual, as its distribution is species-specific. As an obligate aerobe, V. cholerae requires oxygen to survive and reproduce, making it an aerobic microbe that thrives in the presence of oxygen. In fact, it is often found in aquatic environments, such as brackish water and coastal areas, where oxygen levels are relatively high. One of the most significant aspects of V. cholerae is its role in causing cholera, a diarrheal disease that can lead to severe dehydration and even death if left untreated. The bacterium produces a toxin that stimulates the production of cyclic GMP, leading to increased intestinal fluid secretion and the characteristic symptom of watery diarrhea. Cholera is typically spread through contaminated food and water, and vaccination remains a crucial tool in preventing and controlling outbreaks. Notably, V. cholerae has been responsible for numerous pandemics throughout history, including the devastating 7th and 19th century outbreaks that spread worldwide. Today, it remains a significant public health concern, particularly in areas with inadequate sanitation and hygiene infrastructure. As a result, continued research and surveillance are necessary to combat the spread of this life-threatening pathogen." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 RHPA00000000.1 Bac0000376 Vibrio cholerae str. NIH41 "Vibrio cholerae str. NIH41 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It is a heterotrophic organism, relying on organic compounds for energy, which allows it to adapt to various habitats where such nutrients are available.↵↵The optimal growth temperature for Vibrio cholerae str. NIH41 is around 20.0°C, suggesting that this strain may be well-suited to cooler aquatic environments, which are often associated with its genus. The ability to grow effectively at this temperature, alongside its facultative anaerobic metabolism, may provide insights into its ecological resilience, particularly in fluctuating environmental conditions.↵↵Overall, the adaptability of Vibrio cholerae str. NIH41 to diverse habitats and its metabolic versatility may play a role in its survival and persistence in varying ecological niches, potentially influencing its interactions within microbial communities and its responses to environmental stressors." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 JIDO00000000.1 Bac0000377 Vibrio cholerae str. VcCHNf2 "Vibrio cholerae str. VcCHNf2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. V. cholerae str. VcCHNf2 is heterotrophic, relying on organic compounds for energy, which underscores its adaptability in various habitats.↵↵The optimal growth temperature for this strain is around 20.0 °C, suggesting a preference for cooler environments, which may influence its ecological niches. This trait can be particularly relevant for its survival in aquatic ecosystems where temperature fluctuations are common. Given the diverse habitats that V. cholerae can inhabit, including both marine and freshwater systems, the strain's ability to adapt to varying oxygen levels and temperatures may play a crucial role in its ecological interactions and distribution.↵↵In summary, V. cholerae str. VcCHNf2 exemplifies the versatility of Vibrio species, capable of occupying multiple ecological niches while demonstrating specific physiological traits that enable its survival and proliferation under varying environmental conditions. Further research on this strain could provide insights into its ecological roles and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWB00000000.1 Bac0000378 Vibrio cholerae str. VcCHNf3 "Vibrio cholerae strain VcCHNf3 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells. This strain exhibits heterotrophic growth, indicating its reliance on organic compounds as a source of energy. VcCHNf3 is classified as a facultative anaerobe, which allows it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is around 20.0 °C, suggesting a preference for cooler habitats.↵↵The strain's ability to inhabit multiple environments highlights its ecological versatility and potential adaptability to varying conditions. This trait may reflect the broader adaptability of Vibrio cholerae as a genus, which is known to inhabit diverse aquatic environments, including both freshwater and marine ecosystems. Understanding the ecological niche of VcCHNf3 could provide insights into its survival strategies and interactions within its habitats. Further investigations into its metabolic capabilities and environmental interactions may yield important information regarding its role in microbial communities and potential responses to environmental stressors." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWC00000000.1 Bac0000379 Vibrio cholerae str. VcCHNf9 "Vibrio cholerae str. VcCHNf9 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits a heterotrophic mode of metabolism, utilizing organic compounds for energy. It is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The optimal temperature for growth is around 20.0°C, suggesting a preference for cooler conditions that may reflect its ecological niche.↵↵Vibrio cholerae str. VcCHNf9 is found in diverse habitats, which can include marine and freshwater environments, as well as estuarine ecosystems. This adaptability to various habitats may play a crucial role in its survival and proliferation, especially in fluctuating environmental conditions.↵↵Given its physiological traits and habitat versatility, V. cholerae str. VcCHNf9 may contribute to the dynamic microbial communities in aquatic systems, where it could engage in complex interactions with other microorganisms. The presence of this strain in multiple environments highlights the ecological significance of Vibrio species in nutrient cycling and their potential role in shaping microbial diversity in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWI00000000.1 Bac0000380 Aliivibrio fischeri "Aliivibrio fischeri is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits facultative anaerobic metabolism, allowing it to thrive in a variety of oxygen conditions. This microbe is a heterotroph, deriving its energy from organic compounds, which enables it to occupy diverse habitats, although specific environmental contexts were not provided. ↵↵Optimal growth of A. fischeri occurs at a temperature of approximately 20.0°C, suggesting a preference for cooler environments, which may influence its ecological niches and interactions within microbial communities. The ability to grow in both aerobic and anaerobic conditions indicates a metabolic flexibility that may enhance its survival in fluctuating environments.↵↵Notably, A. fischeri is known to engage in symbiotic relationships with certain marine organisms, particularly in association with bioluminescent systems. This trait not only highlights its ecological significance but also suggests that its metabolic capabilities may play a role in the light-emitting processes of its hosts. The versatility in habitat and energy sourcing further underscores the adaptive strategies employed by A. fischeri in various marine ecosystems, where it likely contributes to nutrient cycling and microbial dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio fischeri Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Symbiotic Singles Non-pathogenic 668 MCGJ00000000.2 Bac0000381 Vibrio owensii "Vibrio owensii is a Gram-negative bacterium that has been identified in aquaculture settings, particularly within the Changjiang estuary, a region characterized by its marine environment. This microbe is part of the Vibrionaceae family, which is known for its diverse members that inhabit coastal and estuarine ecosystems. The presence of V. owensii in such environments suggests its potential role in the aquatic food web, possibly contributing to nutrient cycling or serving as a food source for various marine organisms.↵↵The habitat of V. owensii in aquaculture indicates its relevance to fish farming practices, where it may interact with cultivated species and affect the microbial community dynamics within these systems. Additionally, the estuarine environment of the Changjiang estuary, with its unique salinity and nutrient gradients, likely influences the physiological and metabolic adaptations of this bacterium. ↵↵Understanding the ecological role of V. owensii in marine habitats, particularly in relation to aquaculture, could provide insights into the management of microbial communities and the health of cultivated marine species. Further studies may elucidate its interactions within these ecosystems and potential benefits or challenges it poses to aquaculture practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio owensii negative aquaculture; Changjiang estuary; Marine 669 UHIN00000000.1 Bac0000382 Vibrio harveyi "Vibrio harveyi is a Gram-negative bacterium primarily found in marine environments, including aquaculture settings and the Changjiang estuary. This microbe is part of the Vibrio genus, which is known for its diverse ecological roles in aquatic ecosystems. As a member of the vibrio group, V. harveyi is adapted to thrive in saline conditions, which is indicative of its marine habitat. ↵↵The organism exhibits typical characteristics associated with Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. These features play a role in its interactions with the surrounding environment, influencing both its survival strategies and potential roles in nutrient cycling within marine ecosystems.↵↵Vibrio harveyi is particularly significant in aquaculture, where its presence may have implications for the health of cultured marine species. The bacterium's adaptability to varying environmental conditions underscores its ecological importance in estuarine and marine habitats. Furthermore, studying V. harveyi can provide insights into the complex microbial dynamics of aquaculture systems, highlighting the interplay between microbial communities and their aquatic environments. The ecological roles of such bacteria may extend to influencing the health of marine ecosystems and the sustainability of aquaculture practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi negative aquaculture; Changjiang estuary; Marine 669 NZ_CP014038.2 Bac0000383 Vibrio parahaemolyticus str. Vp152 "Vibrio parahaemolyticus str. Vp152 is a Gram-negative, rod-shaped bacterium that exists as single cells and is characterized by its nonsporulating nature. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in diverse oxygen conditions, and it relies on heterotrophic processes for energy acquisition. Vp152 exhibits optimal growth at a temperature of 20.0°C, suggesting a preference for cooler aquatic environments, which aligns with its habitat in marine ecosystems.↵↵The ability to thrive in aquatic habitats indicates that Vp152 may play a role in the microbial dynamics of marine environments, potentially contributing to nutrient cycling and organic matter decomposition. Understanding the traits of Vp152 can aid in elucidating its ecological functions and interactions within its aquatic habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 LCUL00000000.1 Bac0000384 Vibrio parahaemolyticus "Vibrio parahaemolyticus is a gram-negative, curved rod-shaped bacterium, classified as a mesophile due to its optimal growth temperature of around 37°C. It is a chemoheterotroph, meaning it obtains its energy and carbon from organic compounds, and it is a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments. This microbe predominantly inhabits marine and estuarine environments, thriving in saltwater where it can be found attached to fish or shellfish, showcasing its role as a common pathogen in seafood-related illnesses. As a gram-negative organism, Vibrio parahaemolyticus possesses a thin peptidoglycan layer and an outer membrane that contains lipopolysaccharides, contributing to its pathogenicity and resistance against certain antibiotics. Its characteristic curved rod shape, often described as comma-shaped, facilitates motility in its aquatic habitats, where it uses a single polar flagellum for propulsion. The mesophilic nature of this microbe allows it to thrive at human body temperature, making it particularly relevant in foodborne illnesses. Vibrio parahaemolyticus is most notably linked to gastroenteritis, often acquired by consuming raw or undercooked shellfish, particularly oysters. The symptoms can include diarrhea, abdominal cramps, nausea, vomiting, and fever, typically appearing within 24 hours of consumption. Remarkably, this bacterium exhibits a unique biochemical feature: it can produce thermostable direct hemolysin (TDH), which plays a major role in its virulence by damaging host cell membranes. Given its adaptability to various environments and its health implications, Vibrio parahaemolyticus continues to be a focus of study in marine microbiology and food safety, prompting public health advisories for safe seafood consumption." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 LASG00000000.1 Bac0000385 Vibrio parahaemolyticus str. 229 "Vibrio parahaemolyticus str. 229 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is nonsporulating. This strain is a heterotroph, deriving its energy from organic compounds, and it thrives in aquatic environments, reflecting its natural habitat. The optimal growth temperature for V. parahaemolyticus str. 229 is approximately 20.0 degrees Celsius, which suggests a preference for cooler marine or estuarine conditions rather than warmer temperatures that might be found in some other aquatic habitats. As a facultative anaerobe, this microorganism has the ability to grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions that may occur in its aquatic ecosystem.↵↵The ecological implications of V. parahaemolyticus str. 229's characteristics suggest that it plays a role in organic matter decomposition in marine environments, contributing to nutrient cycling within these ecosystems. Its heterotrophic lifestyle and adaptability to fluctuating oxygen levels may also enable it to thrive in diverse ecological niches, potentially influencing microbial community dynamics in aquatic habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 MRBW00000000.1 Bac0000386 Vibrio vulnificus str. FORC_036 "Vibrio vulnificus str. FORC_036 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is particularly advantageous for survival in diverse aquatic habitats. Its heterotrophic nature signifies that it obtains energy through the consumption of organic compounds, which is consistent with the nutrient-rich environments typically found in marine and estuarine ecosystems.↵↵Optimal growth conditions for V. vulnificus str. FORC_036 are at a temperature of 20.0°C, suggesting a preference for moderately warm aquatic environments. This temperature preference aligns with the natural habitats of many Vibrio species, which are commonly found in coastal waters, where temperatures can fluctuate seasonally but often remain within a range conducive to their growth.↵↵The ecological role of V. vulnificus str. FORC_036 in its aquatic habitat may involve nutrient cycling and interactions with other microbial communities, as is common with many heterotrophic bacteria. The adaptability to varying oxygen levels allows it to occupy niches that may be less accessible to strictly aerobic or anaerobic microorganisms, thereby contributing to the overall microbial diversity and functionality of its ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 672 NZ_CP015512.1 Bac0000387 Vibrio vulnificus "Vibrio vulnificus is a gram-negative, curved rod-shaped bacterium that thrives in warm temperatures, falling under the category of mesophilic microorganisms. It is a heterotroph, which means it obtains its energy by breaking down organic compounds, rather than producing its own food through photosynthesis. This bacterium is able to produce energy through the process of fermentation, utilizing the presence of oxygen or the absence of oxygen to facilitate its metabolic processes. The Gram stain of V. vulnificus is negative, indicating that the bacterium is resistant to the Gram stain and will not retain the crystal violet dye. Its curved shape, also known as a vibrio, is a characteristic that distinguishes it from other types of bacteria. V. vulnificus is capable of inhabiting all body sites, making it a significant pathogen in humans. This bacterium is an obligate aerobe, requiring the presence of oxygen to survive and replicate. It is also a microaerophile, preferring environments with low levels of oxygen. In terms of its body site distribution, V. vulnificus can be found in the gastrointestinal tract, skin, and other areas of the human body. One of the most significant facts about V. vulnificus is its ability to cause severe infections in individuals with compromised immune systems, such as those with liver disease or undergoing medical treatments that weaken their immune response. In these cases, even minor exposure to the bacterium can lead to severe illness or death, making it a significant public health concern." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 672 PDFW00000000.1 Bac0000388 Vibrio mimicus "Vibrio mimicus is a gram-negative, rod-shaped bacterium that belongs to the family Vibrionaceae. This marine organism is classified as a mesophile, thriving optimally at moderate temperatures typically between 30°C and 37°C. As a chemoheterotroph, V. mimicus relies on organic compounds for energy and carbon, predominantly found in its aquatic environments. It is categorized as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic conditions, showcasing its versatility in various environments. Vibrio mimicus is primarily associated with marine and estuarine environments, frequently inhabiting coastal waters and estuaries. Its presence is often linked to the consumption of raw or undercooked seafood, particularly shellfish. This microbe can colonize multiple body sites during infection, with the gastrointestinal tract being the most common, leading to illnesses characterized by watery diarrhea, abdominal pain, and nausea.In terms of pathogenicity, V. mimicus is known to cause gastroenteritis, particularly in individuals who consume contaminated seafood. The bacterium can also produce toxins that can exacerbate the severity of symptoms, similar to other vibrios like Vibrio cholerae. Beyond its medical significance, V. mimicus holds ecological importance as part of the marine microbiome, contributing to nutrient cycling within aquatic ecosystems. Research is ongoing to understand its role in marine food webs and its potential impacts on public health, given the rising temperatures of ocean waters which may influence its distribution and pathogenicity in the future." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus Positive Curved rod Yes Facultative anaerobe aquatic environments; aquatic/estuarine environment; Fresh water; Marine; sea foods; sediment; shrimp processing facility; water 674 LOSJ00000000.2 Bac0000389 Vibrio fluvialis str. NCTC 11327 "Vibrio fluvialis strain NCTC 11327 is a Gram-negative bacterium that thrives in a variety of aquatic environments, including coastal, estuarine, freshwater, and marine habitats. As an aerobic organism, it requires oxygen for growth, which aligns with its ecological niches where oxygen-rich waters are prevalent. ↵↵This strain's ability to inhabit diverse aquatic environments suggests a potential versatility in its metabolic capabilities, allowing it to adapt to varying salinities and nutrient availabilities encountered in coastal and freshwater ecosystems. The presence of Vibrio fluvialis in these environments may indicate its role in biogeochemical cycling, particularly concerning organic matter decomposition and nutrient recycling in aquatic ecosystems.↵↵Moreover, the ecological significance of Vibrio fluvialis strain NCTC 11327 may extend to its interactions with other microorganisms and its contribution to microbial community dynamics in the habitats it occupies. Understanding the specific traits of this strain can enhance our knowledge of its ecological role and potential applications in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fluvialis Negative Yes Aerobe coastal environments; estuarine environments; Fresh water; Marine Animal; Human 676 LMTE00000000.1 Bac0000390 Vibrio fluvialis "Vibrio fluvialis is a Gram-negative, comma-shaped bacterium that thrives in warm, brackish waters, classified as a mesophile due to its preference for moderate temperature ranges, typically between 20°C to 37°C. This microbe is a chemoheterotroph, deriving its energy from organic compounds, making it dependent on the surrounding environment for its nutritional needs. As a facultative anaerobe, Vibrio fluvialis can utilize oxygen for respiration but can also survive in anaerobic conditions, providing it with versatility in various ecological niches. Vibrio fluvialis is primarily found in aquatic environments, particularly estuaries and coastal regions, where it can inhabit the gastrointestinal tracts of marine animals. This microbe is often associated with seafood and can be a concern for human health, especially when raw or undercooked shellfish are consumed. It is capable of colonizing not just the water column but also occupies a range of ecological niches, including sediments and associated biofilms. Beyond its role in aquatic ecosystems, Vibrio fluvialis has gained attention due to its potential to cause gastroenteritis in humans. Symptoms can include diarrhea, abdominal pain, vomiting, and fever. The pathogenicity of Vibrio fluvialis may be linked to the transmission of virulence factors, which allow it to survive and thrive in host conditions. Moreover, this bacterium contributes to the biogeochemical cycling of nutrients in coastal waters, playing a role in the decomposition of organic matter. Ongoing research into Vibrio fluvialis highlights its ecological importance and potential implications for public health, particularly as global warming alters marine environments and microbial community structures." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fluvialis Negative Yes Aerobe coastal environments; estuarine environments; Fresh water; Marine Animal; Human 676 NZ_CP014035.2 Bac0000391 Vibrio campbellii str. BoB Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 35 Changjiang estuary; coastal sites; Marine 680 NZ_CP026316.1 Bac0000392 Vibrio campbellii str. DS40M4 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 35 Changjiang estuary; coastal sites; Marine 680 NZ_CP030790.1 Bac0000393 Vibrio gazogenes Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gazogenes estuarine; estuarine marshes; Marine; marine biofilms; saline environments 687 NZ_CP018836.1 Bac0000394 Vibrio mediterranei str. 117-T6 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mediterranei 689 NZ_CP033579.1 Bac0000395 Plesiomonas shigelloides str. MS-17-188 "Plesiomonas shigelloides str. MS-17-188 is a Gram-negative, nonsporulating bacterium characterized by its vibrioidal shape and aerobic metabolism. This strain thrives optimally at a temperature of 30.0°C and utilizes a chemoheterotrophic lifestyle, deriving energy from organic compounds. ↵↵Plesiomonas shigelloides is known to inhabit diverse environments, suggesting a degree of ecological versatility. The combination of its aerobic nature and ability to exploit various organic substrates may facilitate its survival in different habitats, ranging from aquatic environments to potentially human-associated ecosystems. This adaptability may allow P. shigelloides str. MS-17-188 to interact with a range of microbial communities, highlighting its potential role in nutrient cycling and community dynamics. ↵↵Further research into the specific ecological niches occupied by this strain could provide valuable insights into its functional role within microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Plesiomonas Plesiomonas shigelloides Negative Vibrio Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 703 NZ_CP027854.1 Bac0000396 Aggregatibacter actinomycetemcomitans str. 624 "Aggregatibacter actinomycetemcomitans str. 624 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic growth, thriving optimally at 37.0°C. As a nonsporulating organism, it relies on a stable environment for survival and reproduction. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which is consistent with its habitat within the host gut.↵↵The presence of A. actinomycetemcomitans in the gut suggests a potential role in the complex microbial communities that inhabit this environment. The bacterium’s ability to adapt to both aerobic and anaerobic conditions allows it to occupy diverse niches within the gut microbiome, where it may contribute to metabolic processes and nutrient cycling. While the specific ecological functions of this strain remain to be fully elucidated, its versatility in oxygen utilization and dependency on organic substrates underscore its potential importance in gut health and microbial interactions. Further research could illuminate its role in maintaining gut homeostasis or its interactions with other microbial species in the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 714 NZ_CP012959.1 Bac0000397 Actinobacillus lignieresii "Actinobacillus lignieresii is a Gram-negative, rod-shaped bacterium that predominantly inhabits the oral cavity. This microbe is classified as aerobic, indicating that it requires oxygen for its growth and metabolic processes. The presence of A. lignieresii in the oral environment suggests a role in the complex microbial communities associated with the oral cavity of various hosts.↵↵As a member of the genus Actinobacillus, A. lignieresii shares characteristics with other bacteria in this group, notably in its morphological and physiological traits. The ability to thrive in aerobic conditions may position this organism to participate in specific biochemical interactions within the oral microbiome, potentially influencing the overall health and balance of microbial populations in this habitat.↵↵Understanding A. lignieresii's role in the oral cavity can provide insights into how it may contribute to the dynamics of microbial interactions and its potential effects on host organisms. Further studies could elucidate its specific interactions with other microbes and its contributions to oral health or disease, highlighting the complex interplay between microbial inhabitants and their environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus lignieresii negative Rod aerobic oral cavity 720 UFRN00000000.1 Bac0000398 Haemophilus influenzae biotype aegyptius str. F1946 "Haemophilus influenzae biotype aegyptius str. F1946 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 35.0°C. This microbe is primarily associated with host habitats, indicating a close relationship with its living environments. As an aerobe and facultative anaerobe, it possesses the metabolic versatility to survive in both aerobic and microaerophilic conditions, enabling it to adapt to varied oxygen levels encountered in host tissues.↵↵The specific adaptation to host-associated habitats suggests that H. influenzae biotype aegyptius str. F1946 may play a role in the microbial communities of its host, potentially influencing local microbiomes and interacting with host immune responses. This adaptability to oxygen availability and temperature may also provide insights into its survival strategies within host environments, where fluctuations in oxygen levels are common due to metabolic activity and tissue responses. Further investigation into its ecological interactions could enhance our understanding of its role in host-microbe dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 725 LNKS00000000.1 Bac0000399 Haemophilus influenzae biotype aegyptius str. F3039 "Haemophilus influenzae biotype aegyptius str. F3039 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic metabolic capabilities. This strain thrives optimally at a temperature of 35.0°C, which aligns with the typical physiological conditions found in warm-blooded hosts. As a host-associated microbe, H. influenzae biotype aegyptius is often found colonizing mucosal surfaces, where it may play a role in the microbial communities of its host.↵↵The dual oxygen requirement of this strain suggests a versatile adaptation mechanism, allowing it to survive in varying oxygen conditions within its ecological niche. Such adaptability could facilitate its persistence in diverse environments within host tissues. Given its specific habitat and metabolic characteristics, H. influenzae biotype aegyptius str. F3039 may interact with host immune responses and other microbial inhabitants, potentially influencing local microbiome dynamics.↵↵This strain's ability to thrive in host-associated environments while adapting to fluctuating oxygen levels underscores its potential role in the complex interplay of host-microbe interactions, which may have implications for understanding both health and disease contexts in microbiological research." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 725 LNKN00000000.1 Bac0000400 Haemophilus haemolyticus str. 1P26 "Haemophilus haemolyticus strain 1P26 is a Gram-negative bacterium primarily found in the nasopharynx and upper respiratory tract of humans. This microbe exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which may facilitate its survival in the fluctuating oxygen levels encountered in the respiratory system. ↵↵As a member of the genus Haemophilus, this strain shares characteristics with other species within the group, particularly in its growth requirements and habitat preferences. The presence of H. haemolyticus in the nasopharyngeal region suggests a potential role in the microbial community of the upper respiratory tract, where it may interact with other commensal and pathogenic microorganisms. ↵↵Research into the ecological roles of such bacteria is critical, as they may influence respiratory health or contribute to the dynamics of microbial communities in the nasopharynx. The facultative anaerobic nature of H. haemolyticus strain 1P26 indicates its adaptability and resilience in varying conditions, which could be significant in understanding its interactions within the nasopharyngeal microbiome. Further studies may illuminate the specific functions this strain performs in its natural habitat and its potential implications for respiratory health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus haemolyticus Negative Facultative anaerobe nasopharynx; upper respiratory tract 726 LCTI00000000.1 Bac0000401 Haemophilus haemolyticus str. 11P18 "Haemophilus haemolyticus strain 11P18 is a Gram-negative bacterium that resides in the nasopharynx and upper respiratory tract of humans. As a facultative anaerobe, it possesses the ability to thrive in both aerobic and anaerobic environments, enabling it to adapt to varying oxygen levels within its natural habitat. The presence of this microbe in the upper respiratory tract suggests a potential role in the complex microbial community of the nasopharynx, where it may interact with other commensal organisms and contribute to the overall homeostasis of the respiratory microbiome. ↵↵While the specific ecological functions of Haemophilus haemolyticus strain 11P18 are not fully characterized, its adaptation to the upper respiratory environment highlights the importance of such microbes in maintaining respiratory health and potentially influencing host immunity. Further studies may elucidate its interactions with other microbial species and its role in respiratory health or disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus haemolyticus Negative Facultative anaerobe nasopharynx; upper respiratory tract 726 LCTK00000000.1 Bac0000402 Haemophilus haemolyticus "Haemophilus haemolyticus is a Gram-negative, rod-shaped (bacillus) bacterium classified as a facultative anaerobe with a temperature preference for mesophilic conditions, functioning as a chemoheterotroph. This microbe is typically found in various body sites, including the respiratory tract and the oral cavity, and can also inhabit the nasopharynx of healthy individuals.As a Gram-negative organism, H. haemolyticus possesses a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, contributing to its pathogenic potential and resistance to certain antibiotics. Its rod-like shape allows for motility and interactions with human tissues. Being a mesophilic organism, it thrives at moderate temperatures, generally between 30°C and 37°C, which coincides with the average human body temperature, facilitating its colonization and persistence within the host. As a facultative anaerobe, H. haemolyticus has the flexibility to grow in both the presence and absence of oxygen, allowing it to adapt to varying environments within the host. It derives energy from organic compounds, classifying it as a chemoheterotroph, meaning it relies on carbon sources obtained from other organisms for growth and metabolic functions. H. haemolyticus is often considered part of the normal flora; however, it has been implicated in respiratory infections and can occasionally be associated with more severe illnesses, particularly in immunocompromised individuals. The bacterium can exhibit hemolytic activity, breaking down red blood cells, which may play a role in its pathogenicity. Its ability to form biofilms enhances its virulence, making it a challenging organism to eradicate in clinical settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus haemolyticus Negative Facultative anaerobe nasopharynx; upper respiratory tract 726 LZDL00000000.1 Bac0000403 Haemophilus influenzae "Haemophilus influenzae, a Gram-negative, non-motile, rod-shaped bacterium, thrives at a temperature range of 22-37°C, falling under the category of mesophilic microbes. As a heterotroph, it derives energy by breaking down complex organic molecules, primarily carbon-rich compounds, and converting them into ATP. Haemophilus influenzae produces energy through a process called fermentation, utilizing the byproducts of glycolysis to generate ATP. The Gram stain reaction yields a pinkish-red color, indicating the presence of a thin peptidoglycan layer, characteristic of Gram-negative bacteria. The organism's rod shape is typical of the family Pasteurellaceae, to which Haemophilus influenzae belongs. Haemophilus influenzae is a facultative anaerobe, able to survive in the presence or absence of oxygen. However, it grows more readily in aerobic conditions, with optimal growth occurring between 25-30°C. Its ability to adapt to different environmental conditions makes it a versatile and opportunistic pathogen. As a ubiquitous organism, Haemophilus influenzae can be found in various body sites, including the nasopharynx, throat, sinuses, and middle ear, as well as on the skin, conjunctiva, and respiratory tract. It is not limited to humans, as it also infects other mammals, including animals and livestock. Haemophilus influenzae has been identified as a significant pathogen, responsible for a range of diseases, including meningitis, pneumonia, otitis media, and conjunctivitis. Its ability to adhere to host cells and evade the host immune response contributes to its virulence." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Facultative anaerobe 35 Mesophilic HostAssociated Free living 727 NEBH00000000.1 Bac0000404 Haemophilus influenzae str. HI1408 "Haemophilus influenzae str. HI1408 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 35.0°C. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen. H. influenzae str. HI1408 is host-associated, suggesting a close relationship with host organisms, which may be crucial for its survival and proliferation.↵↵The structural characteristics of H. influenzae str. HI1408 as a Gram-negative bacterium imply the presence of a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interactions with host immune systems and affect antibiotic susceptibility. Given its habitat, it is likely that this strain plays a significant role in the microbial communities associated with its host, potentially contributing to the maintenance of host health or influencing host-pathogen dynamics.↵↵Understanding the specific conditions under which H. influenzae str. HI1408 flourishes can provide insights into its ecological roles, particularly in relation to its host. The facultative anaerobic nature may allow it to adapt to varying oxygen levels within different niches of the host environment, thereby enhancing its resilience and versatility. This adaptability underscores the importance of H. influenzae str. HI1408 in the context of host-associated microbial ecosystems, where it may contribute to niche competition and microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Facultative anaerobe 35 Mesophilic HostAssociated Free living 727 LFDJ00000000.1 Bac0000405 Avibacterium paragallinarum "Avibacterium paragallinarum is a Gram-negative, nonsporulating rod-shaped bacterium that is primarily associated with poultry, particularly chickens. This microbe is a member of the family Pasteurellaceae and is recognized for its role in avian respiratory diseases. Its morphology as a rod indicates a specific structural adaptation that may influence its interactions within host environments, yet it lacks the ability to form spores, which typically enhances microbial resilience under adverse conditions.↵↵The absence of sporulation in Avibacterium paragallinarum suggests that it may rely on other mechanisms for survival and persistence in the environment, possibly including biofilm formation or other protective strategies that are common among non-sporulating bacteria. This characteristic could imply a more immediate vulnerability to environmental stressors compared to sporulating species, thereby influencing its ecological niche and survival strategies.↵↵Research into the ecological dynamics of Avibacterium paragallinarum could shed light on its interactions with other microbial communities present in poultry environments. Understanding these interactions may provide valuable insights into its role in avian health and disease management, highlighting the significance of this microbe within the broader context of poultry microbiomes. Overall, Avibacterium paragallinarum exemplifies the complex interplay between microbial traits and ecological adaptation in avian species." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Avibacterium Avibacterium paragallinarum negative Rod Nonsporulating 728 RQXR00000000.1 Bac0000406 Haemophilus parainfluenzae "Haemophilus parainfluenzae is a Gram-negative, coccobacillary-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites, including the respiratory, gastrointestinal, and genitourinary tracts, of humans and other species, and is a Facultative Anaerobe. The Gram-negative characteristic indicates that the microbe's cell wall is composed of a thin peptidoglycan layer, making it more susceptible to certain antibiotics. Its coccobacillary shape allows it to adhere to and colonize host cells, facilitating its ability to cause infections. As a mesophile, Haemophilus parainfluenzae grows optimally at temperatures between 20-45°C, which is consistent with the natural human body temperature.As a Chemoheterotroph, Haemophilus parainfluenzae requires organic compounds for energy and carbon sources, which it obtains from its host or environment. This characteristic is essential for its survival and pathogenicity. The microbe's ability to inhabit various body sites in different species highlights its adaptability and potential to cause a range of infections. Haemophilus parainfluenzae is often found in the human respiratory tract, where it can contribute to conditions such as pneumonia, bronchitis, and sinusitis. Its presence in other body sites, including the gastrointestinal and genitourinary tracts, can also lead to infections, particularly in individuals with compromised immune systems.Haemophilus parainfluenzae's classification as a Facultative Anaerobe means it can grow in the presence or absence of oxygen, allowing it to thrive in various environments. This flexibility is crucial for its survival and pathogenicity, as it can adapt to different oxygen levels in the host. The microbe's ability to survive in low-oxygen environments, such as the gastrointestinal tract, enables it to colonize and infect these areas. Haemophilus parainfluenzae has been implicated in several types of infections, including endocarditis, septicemia, and meningitis, particularly in individuals with underlying medical conditions or compromised immune systems. Its ability to form biofilms and adhere to host cells makes it a formidable pathogen, capable of causing severe and persistent infections." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 729 QEPT00000000.1 Bac0000407 Histophilus somni str. UOC-EPH-KLM-013 "Histophilus somni str. UOC-EPH-KLM-013 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen environments. This strain is optimally active at a temperature of 35.0°C, which is typical of the physiological conditions found in its host-associated habitat. ↵↵As a member of the genus Histophilus, this bacterium is adapted to living in association with animal hosts, reflecting its potential role in the microbiota of specific wildlife or livestock species. The facultative anaerobic nature of H. somni str. UOC-EPH-KLM-013 suggests it can survive in both aerobic and anaerobic environments, which may facilitate its colonization and persistence in diverse biological niches within its host. ↵↵The ability to thrive at a temperature close to that of the mammalian body indicates that this strain may have evolved mechanisms to endure host-specific challenges, further underscoring its ecological significance. Understanding the characteristics of this strain can provide insights into its interactions within the host and potential implications for host health, given the complexities of host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 731 SSCR00000000.1 Bac0000408 Histophilus somni str. UOC-EPH-KLM-014 "Histophilus somni str. UOC-EPH-KLM-014 is a Gram-negative, rod-shaped bacterium with an optimal growth temperature of 35.0°C. This strain is classified as a facultative anaerobe, indicating its capability to thrive in both aerobic and anaerobic environments, though it preferentially utilizes oxygen when available. ↵↵H. somni is primarily host-associated, suggesting a close relationship with its biological hosts, which may influence its physiological adaptations and survival strategies. The combination of its rod shape and metabolic flexibility allows it to colonize various niches within host organisms, potentially utilizing different metabolic pathways depending on the availability of oxygen and other environmental conditions.↵↵The ecological role of H. somni str. UOC-EPH-KLM-014 may involve interactions with the host's microbiota or immune system, providing insights into its potential contributions to the host's health and disease dynamics. Understanding these traits can facilitate further studies on H. somni's biology and its interactions within host ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 731 SUKB00000000.1 Bac0000409 Histophilus somni str. UOC-EPH-KLM-08 "Histophilus somni str. UOC-EPH-KLM-08 is a Gram-negative, rod-shaped bacterium that demonstrates both aerobic and facultative anaerobic growth capabilities. This microbe thrives optimally at a temperature of 35.0°C, suggesting a preference for conditions typically found in warm-blooded hosts. Its habitat is primarily host-associated, indicating a close relationship with its environmental niche within living organisms.↵↵The dual oxygen requirement of H. somni str. UOC-EPH-KLM-08 allows it to adapt to varying oxygen levels within host tissues, which can be crucial for survival in different physiological environments. This flexibility may enhance its ability to colonize diverse niches within the host, reflecting its potential role in host-associated microbiomes.↵↵Given its specific growth temperature and habitat, H. somni str. UOC-EPH-KLM-08 may occupy a significant ecological role in the microbiota of its host, contributing to the complex interactions within the microbial community. Understanding the characteristics of this strain can provide insights into its potential functional roles in health and disease dynamics within host organisms, particularly in the context of microbial ecology and host interactions. Further research may elucidate its specific contributions to the host microbiome and overall host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 731 SSCM00000000.1 Bac0000410 Aggregatibacter aphrophilus "Aggregatibacter aphrophilus is a gram-negative, rod-shaped bacterium classified as a facultative anaerobe and a chemoheterotroph, showing optimal growth at human body temperature (37°C). This microbe is commonly found in various locations in the human body, including the oropharynx, respiratory tract, and dental plaque, highlighting its association with both healthy and diseased states. As a gram-negative organism, Aggregatibacter aphrophilus has a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its pathogenic potential and role in the human microbiota. Its rod-like shape enables it to colonize surfaces effectively, forming biofilms that can be detrimental in certain infections. The classification as a facultative anaerobe allows A. aphrophilus to thrive in both oxygen-rich and oxygen-poor environments, making it versatile in various host tissues. As a chemoheterotroph, it derives energy from organic compounds, which it metabolizes to support its growth and functions. This metabolic flexibility is particularly advantageous in the dynamic environments of the human body, where nutrient availability can fluctuate. Aggregatibacter aphrophilus is known for its involvement in several clinical conditions, including periodontitis, endocarditis, and respiratory infections. Its role in periodontal disease underscores its capacity to interact with other oral pathogens and contribute to biofilm formation on dental surfaces. Additionally, this microbe has been found to exhibit symbiotic relationships with other bacteria, enhancing its influence within polymicrobial communities. Its ability to adapt to various ecological niches in the human body underscores its significance in both health and disease. Researchers continue to study A. aphrophilus to uncover its complexities and implications in microbiome research and infectious disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter aphrophilus Negative Rod No 1 2 Facultative Mesophilic HostAssociated Free living Human 732 QEQC00000000.1 Bac0000411 Canicola haemoglobinophilus Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Canicola Canicola haemoglobinophilus 733 UGHF00000000.1 Bac0000412 Haemophilus parahaemolyticus Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus paraphrohaemolyticus microaerophile 735 UGHT00000000.1 Bac0000413 Glaesserella parasuis str. F9 "Glaesserella parasuis strain F9 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic metabolic capabilities. This microbe is primarily associated with host organisms, indicating a specialized ecological niche within the host environment. ↵↵As a member of the genus Glaesserella, strain F9 is recognized for its adaptability to varying oxygen levels, allowing it to thrive in diverse host-associated environments. The Gram-negative characteristic suggests a complex cell wall structure, which may play a role in its interactions with host immune responses.↵↵Given its habitat and metabolic flexibility, Glaesserella parasuis str. F9 likely possesses mechanisms that enable it to survive and proliferate in the fluctuating conditions of the host environment, potentially influencing microbial community dynamics within the host. This adaptability may be crucial for its role in the microbiome of the host species, contributing to the overall health and stability of the host-associated microbial ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living Animal 738 JHQI00000000.1 Bac0000414 Aggregatibacter segnis "Aggregatibacter segnis is a Gram-negative bacterium that exhibits chemoheterotrophic metabolism, utilizing organic compounds as its energy source. This microbe has been identified in diverse habitats, predominantly in dental plaque and as part of the oropharyngeal flora, indicating its potential role in oral microbiomes. A. segnis is classified as a facultative anaerobe, which allows it to thrive in both aerobic and anaerobic environments, further supporting its presence in the complex microenvironments of the mouth and throat.↵↵The association of A. segnis with dental plaque suggests that it may contribute to the microbial community dynamics within the oral cavity, participating in the formation and maintenance of biofilms on tooth surfaces. Its ability to grow in the presence or absence of oxygen may provide it a competitive advantage in fluctuating oxygen conditions often encountered in oral environments, such as during periods of reduced saliva flow or in areas of localized infection.↵↵Moreover, the presence of A. segnis in oropharyngeal flora may hint at its involvement in the broader context of human health, where it could play a role in maintaining a balanced microbial ecosystem in the oropharynx. Understanding the specific interactions of A. segnis within these microbial communities could offer insights into the balance between health and disease in the oral cavity and oropharynx, emphasizing the importance of microbial diversity in these ecological niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter segnis Negative No 1 facultative anaerobe Chemoheterotroph dental plaque; oropharyngeal flora; oropharynx 739 QEPK00000000.1 Bac0000415 Pasteurella multocida str. C48-1 "Pasteurella multocida str. C48-1 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic growth, thriving optimally at a temperature of 37.0°C. This microbe is primarily host-associated, suggesting a close relationship with its hosts, which may include various mammals and birds. The facultative anaerobic nature of P. multocida indicates its ability to adapt to both aerobic and anaerobic environments, potentially allowing it to colonize diverse tissues within its host.↵↵The rod shape of P. multocida contributes to its motility and interaction with host tissues, which may facilitate its survival and proliferation in different biological niches. The optimal growth temperature of 37.0°C aligns with the body temperature of warm-blooded hosts, reinforcing the notion that this strain has adapted to live within a host-associated environment, making it well-suited for a parasitic lifestyle.↵↵Understanding the specific ecological roles and interactions of Pasteurella multocida str. C48-1 within its host environment could provide insights into its potential impact on host health, especially considering its facultative anaerobic capability. This adaptability may enable the bacterium to thrive in various microenvironments within the host, influencing its overall fitness and ecological success. Further studies exploring these interactions could enhance our understanding of the dynamics between P. multocida and its hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 747 MAPR00000000.1 Bac0000416 Gallibacterium anatis "Gallibacterium anatis is a Gram-negative bacterium recognized for its association with avian species, particularly in poultry. This microbe possesses a rod-shaped morphology typical of many members within the class Gammaproteobacteria. Although specific metabolic pathways and growth conditions are not detailed in the available data, its classification as a Gram-negative organism suggests the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which are characteristic features that may influence its interactions with the host environment.↵↵The ecological role of Gallibacterium anatis is particularly noteworthy, as it has been implicated in the microbiota of the avian gastrointestinal tract. This positioning suggests it may play a role in the complex dynamics of gut health and disease processes within poultry. Given its Gram-negative status, G. anatis may also exhibit resilience against certain antimicrobial agents, a trait that could have implications for poultry management practices.↵↵In summary, Gallibacterium anatis exemplifies the diverse microbial life associated with birds, contributing to our understanding of avian microbiomes. Its presence in poultry underscores the importance of studying Gram-negative bacteria to elucidate their roles in avian health and their potential impact on livestock management strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis negative 750 JPXO00000000.1 Bac0000417 Rodentibacter pneumotropicus str. 394_12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXND00000000.1 Bac0000418 Rodentibacter pneumotropicus str. 607_10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXNH00000000.1 Bac0000419 Rodentibacter pneumotropicus str. FD1189 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXNF00000000.1 Bac0000420 Rodentibacter pneumotropicus str. Ppn95 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXNM00000000.1 Bac0000421 Rodentibacter pneumotropicus str. Ac84 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXNI00000000.1 Bac0000422 Ehrlichia ruminantium str. Crystal Springs "Ehrlichia ruminantium strain Crystal Springs is a Gram-negative coccoid bacterium primarily associated with a host environment. As a member of the genus Ehrlichia, this microbe is known to inhabit the intracellular spaces of host cells, a characteristic that aligns with its classification as a member of the Anaplasmataceae family. The coccoid shape of E. ruminantium suggests a potential adaptation for survival within the host, as this morphology may facilitate evasion from the host's immune response while allowing for intracellular replication.↵↵Ehrlichia ruminantium is typically transmitted through arthropod vectors, which underscores its dependence on specific ecological interactions for propagation and survival. The strain Crystal Springs, like other members of its genus, may play a role in the complex dynamics of host-vector relationships, particularly in ruminant populations. While specific pathogenicity details for this strain are not specified, the general behavior of Ehrlichia species in host cells can have implications for the health and productivity of affected species.↵↵The habitat of E. ruminantium strain Crystal Springs being host-associated reflects its specialized lifestyle, which is indicative of a broader ecological strategy that emphasizes adaptation to specific niches within host organisms. This specificity may influence the strain's interactions with its host microbiome, highlighting the potential for significant ecological roles in maintaining the balance of microbial communities within ruminants." Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium Negative Cocci No 1 2 Mesophilic HostAssociated Symbiotic 779 BDDL00000000.1 Bac0000423 Bacteroides fragilis str. DCMOUH0042B "Bacteroides fragilis str. DCMOUH0042B is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as an anaerobe. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions commonly found in the human body, which is its natural habitat. As a chemoorganotroph, Bacteroides fragilis str. DCMOUH0042B metabolizes organic compounds to derive energy, playing a crucial role in the degradation of complex carbohydrates within the host-associated environment.↵↵The presence of Bacteroides fragilis species in the gut microbiota is essential for maintaining intestinal health, particularly in the degradation of dietary fibers and other organic materials that are not readily digestible by the host. This metabolic capability may contribute to the overall balance of microbial communities in the gastrointestinal tract, influencing nutrient absorption and host metabolism. Furthermore, the unique anaerobic nature of this strain suggests adaptations that allow it to thrive in low-oxygen environments, which is characteristic of the gut ecosystem. Understanding the specific roles and interactions of Bacteroides fragilis str. DCMOUH0042B within its ecological niche could provide insights into its contributions to host health and the potential impacts of dysbiosis in gut microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 NZ_CP036550.1 Bac0000424 Bacteroides fragilis "Bacteroides fragilis is a Gram-negative, rod-shaped bacterium that thrives as an obligate anaerobe, functioning primarily as a chemoheterotroph, utilizing organic compounds for energy production. This microbe is predominantly found in the human gastrointestinal tract, where it plays a crucial role in maintaining gut health and homeostasis.As an obligate anaerobe, B. fragilis cannot survive in the presence of oxygen, which is essential for its metabolic processes. It metabolizes nutrients through fermentation pathways, breaking down complex carbohydrates and proteins to produce short-chain fatty acids, which are beneficial for colon health and serve as energy sources for intestinal cells. This ability to thrive in an oxygen-free environment contributes to the microbe's prevalence in the human gut, where it can constitute a significant portion of the gut microbiota. Bacteroides fragilis has a unique shape characterized by its rod-like structure, which aids in its adaptability and survival within the intestines. This bacterium is not only found in humans but can also be present in various other mammals, highlighting its role in the broader ecosystem of gut microbiomes across species. Moreover, B. fragilis is notable for its potential to influence human health positively and negatively. While it contributes to the digestion of complex polysaccharides and supports the immune system, it can also lead to opportunistic infections if it enters sterile areas of the body, such as during abdominal surgery or in cases of perforated bowel. Its dual nature underscores the delicate balance of microbial communities within the body and the potential implications for health and disease. The study of Bacteroides fragilis continues to reveal insights into the complex relationships between gut microbiota and host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 QRZH00000000.1 Bac0000425 Bacteroides thetaiotaomicron "Bacteroides thetaiotaomicron is a Gram-negative, rod-shaped bacterium that thrives as an obligate anaerobe and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. This microbe is commonly found in the human gut, where it plays a crucial role in the digestion of complex carbohydrates and the synthesis of essential nutrients. As a member of the Bacteroidetes phylum, B. thetaiotaomicron is particularly adept at breaking down dietary fibers and resistant starches that are otherwise indigestible to humans. This capacity allows it to release short-chain fatty acids, which are vital for maintaining gut health and modulating the immune response. Its preference for anaerobic conditions aligns with its habitat in the intestines, where oxygen levels are low, thus enabling it to thrive in an environment that would be hostile to many other microbes. In terms of morphology, B. thetaiotaomicron is characterized by its rod shape and size, typically measuring 0.5 to 0.8 micrometers in diameter and 1.0 to 3.0 micrometers in length. The organism's Gram-negative cell wall structure, consisting of a thin peptidoglycan layer surrounded by an outer membrane, contributes to its resilience in the competitive gut environment. Beyond its role in digestion, B. thetaiotaomicron is also significant in research, particularly in the fields of microbiome studies and gut health. Its ability to interact with host immune cells and modulate inflammatory responses has garnered attention in the context of diseases such as inflammatory bowel disease (IBD) and obesity. Furthermore, the bacterium's genetic tractability makes it a valuable model organism for studying microbial interactions and metabolic pathways within the human microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 818 QRUV00000000.1 Bac0000426 Bacteroides thetaiotaomicron str. 1_1_6 "Bacteroides thetaiotaomicron str. 1_1_6 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. This species is part of the Bacteroides genus, which is significant in the human gut microbiota. Bacteroides thetaiotaomicron plays a crucial role in the digestion of complex carbohydrates, aiding in the breakdown of dietary fibers into shorter-chain fatty acids, which are beneficial for host health. ↵↵As an anaerobe, Bacteroides thetaiotaomicron str. 1_1_6 is adapted to environments with low oxygen levels, such as the intestinal tract, where it contributes to maintaining a balanced microbial ecosystem. Its ability to metabolize a variety of polysaccharides highlights its importance in nutrient absorption and energy production for the host. Furthermore, the presence of such microorganisms is fundamental for the development and function of the immune system, as they interact with the host's immune cells and influence inflammatory responses. ↵↵Overall, Bacteroides thetaiotaomicron str. 1_1_6 exemplifies the complex interrelationships within the gut microbiome, illustrating how specific microbial traits can contribute to broader ecological functions, including nutrient recycling and host health maintenance." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 818 ACIC00000000.2 Bac0000427 Bacteroides thetaiotaomicron str. KLE1254 "Bacteroides thetaiotaomicron str. KLE1254 is a Gram-negative, rod-shaped bacterium that resides in host-associated environments, primarily within the gastrointestinal tract of warm-blooded animals. This organism is classified as an anaerobe, meaning it thrives in environments devoid of oxygen, which is characteristic of the dense, low-oxygen conditions found in the intestines. Bacteroides thetaiotaomicron is known for its role in the degradation of complex polysaccharides, contributing to the overall metabolism and nutrient absorption in the host. ↵↵As a member of the Bacteroidetes phylum, this strain plays a crucial part in maintaining gut homeostasis and supporting the microbiota's diverse functions. Its ability to utilize a wide range of carbohydrates underscores its potential significance in the host's digestive processes and energy harvest. Furthermore, the interactions between Bacteroides thetaiotaomicron and the host's immune system suggest a delicate balance that influences both microbial community structure and host health. ↵↵Given its ecological niche and metabolic capabilities, Bacteroides thetaiotaomicron str. KLE1254 may provide insights into the development of microbial therapies aimed at enhancing gut health or modulating immune responses, highlighting its potential importance in the field of microbiome research." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 818 LTDD00000000.1 Bac0000428 Bacteroides uniformis "Bacteroides uniformis is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, preferentially growing between 25°C to 37°C. As a chemoheterotroph, it obtains energy by breaking down organic compounds and employing a respiratory metabolism. This bacterium produces energy through the process of fermentation, utilizing the breakdown of complex carbohydrates, proteins, and lipids as a source of carbon and energy. In terms of its Gram stain, B. uniformis exhibits a characteristic Gram-negative reaction, meaning that it has a thin peptidoglycan layer and an outer membrane. Its rod-shaped morphology allows it to adapt to a wide range of environments, from the human gut to soil and aquatic ecosystems. B. uniformis is found in all body sites, including the gastrointestinal tract, respiratory and urinary tracts, and skin, where it plays a crucial role in the decomposition of organic matter and the maintenance of ecosystem balance. As an obligate anaerobe, B. uniformis requires a reducing environment to survive and grow, making it sensitive to oxygen. In the absence of oxygen, it can flourish, using alternative electron acceptors such as nitrate, sulfate, and iron(III) as a means of energy production. Furthermore, B. uniformis has been implicated in various human diseases, including inflammatory bowel disease, appendicitis, and peritonitis. However, its beneficial effects cannot be overstated, as it also participates in the degradation of toxic compounds and the production of vitamins such as vitamin K and biotin. In addition to its ecological significance, B. uniformis has also been explored as a potential probiotic agent, exhibiting immunomodulatory properties and the ability to manipulate the gut microbiome. Its ability to survive and thrive in the human gut, despite the presence of antibiotics and other antimicrobial agents, has also gained attention for its potential role in antibiotic resistance." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QSTL00000000.1 Bac0000429 Phocaeicola vulgatus str. CL10T00C06 "Phocaeicola vulgatus str. CL10T00C06 is a Gram-positive, rod-shaped bacterium that exists as single cells and is classified as an anaerobe, indicating its metabolic processes occur in the absence of oxygen. This strain is notably host-associated, suggesting a potential symbiotic relationship with its host organism. As an anaerobic bacterium, P. vulgatus str. CL10T00C06 may play a crucial role in various biochemical processes within its host, potentially contributing to gut health, nutrient absorption, or fermentation of dietary fibers. ↵↵The specific habitat of this strain underscores its ecological significance, as host-associated microbes often participate in complex interactions within the microbiome, influencing both host physiology and microbial community dynamics. Understanding the traits of P. vulgatus str. CL10T00C06 enhances our knowledge of the functional diversity found in anaerobic bacteria and their contributions to the overall health of the microbiological ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 NTHZ00000000.1 Bac0000430 Phocaeicola vulgatus "Phocaeicola vulgatus is a Gram-positive, anaerobic rod-shaped bacterium predominantly found in host-associated environments. This microbe typically exists as single cells rather than in clusters or chains, which is characteristic of its morphological traits. As an anaerobe, P. vulgatus thrives in environments devoid of oxygen, suggesting its adaptation to the anaerobic conditions often present in host-associated habitats, such as the gastrointestinal tract of various animals.↵↵The ability of P. vulgatus to maintain its viability and metabolic activity in low-oxygen environments highlights its potential role in the microbial communities that inhabit these niches. Its presence may be significant in the context of host-microbe interactions, contributing to the complex dynamics of gut microbiota, although specific functional roles and interactions require further investigation. Overall, P. vulgatus exemplifies the diversity of anaerobic bacteria associated with host organisms, emphasizing the intricate relationships that exist within microbial ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 MNQV00000000.1 Bac0000431 Parabacteroides distasonis str. CBA7138 "Parabacteroides distasonis strain CBA7138 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic environments, specifically within host-associated habitats. This microbe is part of the diverse gut microbiota and contributes to the complex interplay of microbial communities within host organisms. ↵↵As an anaerobe, P. distasonis str. CBA7138 relies on fermentation and other anaerobic metabolic pathways for energy production, making it well-adapted to the oxygen-depleted environments of the gastrointestinal tract. Its capacity to inhabit host-associated niches suggests a potential role in digestive processes and interactions with the host immune system.↵↵The non-sporulating nature of this strain indicates that it may not produce spores as a means of survival under adverse conditions, which could reflect its adaptation to stable environments such as the gut rather than fluctuating external conditions. The ecological role of P. distasonis str. CBA7138 may extend to contributions in maintaining gut health and homeostasis, as well as interactions with other microbial species that populate the gastrointestinal ecosystem. ↵↵Further research into the specific metabolic capabilities and interactions of P. distasonis str. CBA7138 could provide insights into its functional contributions to the host's gut microbiome and its overall impact on the host's health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 NNCA00000000.1 Bac0000432 Parabacteroides distasonis "Parabacteroides distasonis, a Gram-negative, rod-shaped bacterium, is a member of the family Bacteroidaceae. It has a mesophilic temperature preference, thriving in environments between 25-40°C. As a heterotroph, P. distasonis acquires its energy by breaking down organic compounds, using a variety of metabolic pathways to produce ATP. Specifically, this microbe is a facultative anaerobe, capable of surviving in the presence of oxygen, but also able to thrive without it. P. distasonis is a non-motile bacterium, with a slender, curved or slightly bent rod shape. It can be found in various body sites, including the human gut, oral cavity, skin, and respiratory and genital tracts, in all possible species. In terms of oxygen preference, P. distasonis is a facultative anaerobe, which means it can grow in the presence of oxygen, but can also tolerate low oxygen levels or anaerobic conditions. This tolerance allows it to adapt to a wide range of environments and survive in areas with varying levels of oxygen. One of the most notable characteristics of P. distasonis is its ability to produce a variety of metabolites, including short-chain fatty acids, which are produced through the fermentation of complex carbohydrates. These metabolites play an important role in maintaining a healthy gut microbiota, as they serve as energy sources for other microorganisms. Furthermore, studies have shown that P. distasonis is capable of modulating the immune response, influencing the development of allergies and autoimmune diseases. Additionally, it has been linked to the development of certain gastrointestinal disorders, such as irritable bowel syndrome. In conclusion, P. distasonis is a versatile, opportunistic microbe that has adapted to thrive in a wide range of environments. Its ability to produce metabolites, modulate the immune response, and survive in varying oxygen levels makes it an important component of the human microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 QSCD00000000.1 Bac0000433 Butyrivibrio fibrisolvens str. INBov1 "Butyrivibrio fibrisolvens str. INBov1 is a Gram-positive, curved rod-shaped bacterium predominantly found in the rumen of herbivorous animals. Although it is structurally classified as Gram-positive, it exhibits a Gram-negative staining response, which is a notable characteristic that can influence its identification in laboratory settings. This microbe is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen, such as the anaerobic conditions present in the rumen. ↵↵B. fibrisolvens is known for its role in the fermentation of fibrous plant materials, contributing to the digestion process in ruminants. By breaking down complex carbohydrates, it produces short-chain fatty acids, including butyrate, which serve as an important energy source for the host animal. Furthermore, this species plays a significant role in maintaining the overall health of the rumen microbiome, supporting a balanced ecosystem that is crucial for effective nutrient absorption and metabolism in herbivores.↵↵The unique combination of its Gram staining properties and anaerobic lifestyle suggests that B. fibrisolvens str. INBov1 may possess specialized adaptations that allow it to thrive in the competitive and diverse microbial community of the rumen, potentially influencing the fermentation dynamics and nutrient utilization in ruminant hosts." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio fibrisolvens Structurally positive but stains negative Curved rod Yes Anaerobe rumen 831 NZ_CM009897.1 Bac0000434 Porphyromonas gingivalis str. KCOM 2805 "Porphyromonas gingivalis str. KCOM 2805 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is primarily associated with host environments, indicating a close relationship with its biological hosts, which is characteristic of many members of the genus Porphyromonas. ↵↵As a strict anaerobe, P. gingivalis str. KCOM 2805 relies on environments devoid of oxygen, which is typical for bacteria residing in the oral cavity, particularly in subgingival sites where it may contribute to complex microbial communities. The specific adaptation to host-associated habitats suggests a potential role in the oral microbiome, where it may interact with other microbial species and host tissues. ↵↵This strain's characteristics highlight its ecological niche within the oral environment, where it may participate in symbiotic or pathogenic interactions, depending on the context of the host's health. Understanding the traits of P. gingivalis str. KCOM 2805 can provide insights into the dynamics of microbial communities in the oral cavity and the conditions that favor the growth of anaerobic bacteria in these specialized environments. The study of such traits may also contribute to a broader understanding of microbial behavior in host-associated habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 837 NZ_CP024594.1 Bac0000435 Porphyromonas gingivalis "Porphyromonas gingivalis is a gram-negative, rod-shaped microbe that thrives in the mesophilic temperature range, and is classified as a chemoheterotroph, capable of inhabiting various body sites including the oral cavity, gastrointestinal tract, and respiratory tract in humans and other species. As an obligate anaerobe, P. gingivalis requires a low-oxygen environment to survive and grow, which is typically found in the depths of periodontal pockets and other mucosal surfaces. The gram-negative cell wall of P. gingivalis is composed of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contributes to its pathogenicity. The rod-shaped morphology of P. gingivalis allows it to readily adhere to and colonize surfaces, facilitating its role in the development of periodontal disease. As a chemoheterotroph, P. gingivalis relies on the degradation of complex organic molecules, such as proteins and peptides, for energy and nutrients. In the oral cavity, P. gingivalis is a key component of the subgingival microbiome, where it contributes to the formation of biofilms and the progression of periodontitis. Its ability to inhabit various body sites and thrive in low-oxygen environments makes it a significant opportunistic pathogen. Research has shown that P. gingivalis has been linked to an increased risk of developing systemic diseases, such as cardiovascular disease and rheumatoid arthritis, highlighting the complex and multifaceted role of this microbe in human health and disease. The presence of P. gingivalis in atherosclerotic plaques and its ability to invade and replicate within host cells has led to a greater understanding of the mechanisms underlying its pathogenicity." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 837 FUGG00000000.1 Bac0000436 Xylanibacter ruminicola "Xylanibacter ruminicola is a Gram-negative, rod-shaped bacterium that is nonsporulating and classified as an anaerobe. This microbe is primarily associated with host environments, suggesting its role in specific biological systems where it may contribute to various metabolic processes. ↵↵Xylanibacter ruminicola thrives in anaerobic conditions, which is indicative of its adaptation to environments such as the gastrointestinal tracts of ruminants. While its precise interactions within the host ecosystem remain to be fully elucidated, the bacterium likely plays a significant role in the fermentation of plant polysaccharides, particularly xylans, contributing to the overall digestive efficiency of the host.↵↵The nonsporulating nature of Xylanibacter ruminicola suggests that it relies on stable, conducive environments for survival and reproduction, further emphasizing its specialization within host-associated habitats. Understanding the metabolic capabilities and ecological interactions of Xylanibacter ruminicola may provide insights into its potential utility in enhancing the digestive processes of ruminants, thereby influencing agricultural practices related to livestock management and feed efficiency. This highlights the importance of anaerobic microorganisms in the maintenance of host health and nutrient cycling within their ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Xylanibacter Xylanibacter ruminicola Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 839 FRCJ00000000.1 Bac0000437 Fusobacterium nucleatum "Fusobacterium nucleatum is a gram-negative, rod-shaped microbe that thrives in the mesophilic temperature range, categorizing it as a chemoheterotroph, and can be found in all body sites of various species, including the oral cavity, gastrointestinal tract, and genital tract, and is an obligate anaerobe. As a gram-negative microbe, F. nucleatum has a unique outer membrane structure, which plays a crucial role in its pathogenicity and ability to evade the host's immune system. Its rod-shaped morphology allows it to easily adhere to and invade host cells, contributing to its ability to cause disease. The mesophilic temperature preference of F. nucleatum indicates that it grows best in temperatures between 20-45°C, which is typical of most human body temperatures. As a chemoheterotroph, F. nucleatum relies on chemical reactions to obtain energy and organic compounds from its environment, rather than producing its own through photosynthesis or other means. The presence of F. nucleatum in various body sites suggests that it is a highly adaptable microbe, capable of surviving and thriving in different environments. As an obligate anaerobe, F. nucleatum requires the absence of oxygen to grow and survive, which is why it is often found in areas with low oxygen levels, such as the gastrointestinal tract. The ability of F. nucleatum to infect and cause disease in various parts of the body has led to research into its role in certain types of cancer, where it has been found to promote tumor growth and metastasis by suppressing the immune system and creating a pro-tumorigenic microenvironment." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating Animal 851 MLQO00000000.1 Bac0000438 Fusobacterium nucleatum str. MJR7757B "Fusobacterium nucleatum str. MJR7757B is a nonsporulating, Gram-negative rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain is typically associated with host environments, suggesting a close relationship with various host organisms. ↵↵As a member of the Fusobacterium genus, F. nucleatum is known for its role in the human microbiome, particularly within the oral cavity and gastrointestinal tract. The anaerobic nature of this bacterium indicates its adaptation to low-oxygen environments, which is characteristic of many members of the gut microbiota. The ability to flourish at 37.0°C aligns with the physiological temperature of the human body, indicating potential interactions with host systems.↵↵The ecological role of F. nucleatum str. MJR7757B may be significant in maintaining microbial balance within its host-associated habitat. Its presence may contribute to the complex interplay of microbial communities, influencing health and disease states. Understanding the specific traits of this strain can provide insights into the functional dynamics of the microbiome, as well as the potential implications for host health and disease management." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating Animal 851 LRPY00000000.1 Bac0000439 Faecalibacterium prausnitzii str. CNCM I 4540 "Faecalibacterium prausnitzii str. CNCM I 4540 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives optimally at 37.0°C. As a chemoheterotroph, this microbe relies on organic compounds for energy, making it well-suited to diverse habitats, particularly within the human gut microbiota. F. prausnitzii is strictly anaerobic, indicating that it grows in environments devoid of oxygen, which is characteristic of the anaerobic conditions found in the intestinal tract.↵↵This strain is notable for its role within the gut ecosystem, where it contributes to maintaining intestinal health and homeostasis. The presence of F. prausnitzii has been associated with beneficial effects on gut health, including anti-inflammatory properties, suggesting its importance in the overall microbial balance and functionality of the intestinal microbiome. The unique ability of this bacterium to thrive in anaerobic environments while utilizing a range of organic substrates underscores its ecological adaptability and potential implications for gut health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium langellae Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTQ00000000.1 Bac0000440 Faecalibacterium prausnitzii str. CNCM I 4542 "Faecalibacterium prausnitzii str. CNCM I 4542 is a Gram-positive, rod-shaped bacterium that exhibits a nonsporulating phenotype and is classified as an anaerobic chemoheterotroph. This strain demonstrates optimal growth at 37.0°C, suggesting its adaptation to the warm environments typically encountered within the mammalian gastrointestinal tract. ↵↵F. prausnitzii str. CNCM I 4542 is particularly noteworthy for its presence in diverse habitats, including the human gut, where it plays a significant role in maintaining intestinal health. As a member of the gut microbiota, it is involved in various metabolic processes, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for colon health and have anti-inflammatory properties.↵↵This bacterium's ability to thrive in anaerobic conditions aligns with its ecological niche within the gastrointestinal tract, where oxygen levels are minimal. The metabolic activities of F. prausnitzii str. CNCM I 4542 not only support its survival but also influence the overall microbial composition and functionality in the gut ecosystem. Its presence is often associated with a healthy gut microbiome, making it a subject of interest in studies focused on gut health and microbiome-related diseases. The unique metabolic capabilities of this strain underscore its importance in the complex interactions within the gut microbiome, highlighting its potential role in promoting host health through microbial balance and metabolic support." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTS00000000.2 Bac0000441 Faecalibacterium prausnitzii str. CNCM I 4574 "Faecalibacterium prausnitzii strain CNCM I 4574 is a Gram-positive, non-sporulating rod that demonstrates chemoheterotrophic metabolism and thrives in anaerobic environments. Its optimal growth temperature is 37.0°C, which aligns with the physiological conditions found in the human gut, suggesting a potential adaptation to host-associated habitats. This strain is part of a broader ecological community within the gastrointestinal tract, where it contributes to maintaining gut health through its metabolic activities.↵↵F. prausnitzii is known to utilize various organic compounds as energy sources, reflecting its versatility in different habitats. As a prominent member of the gut microbiota, it is of interest due to its potential role in modulating immune responses and its association with health and disease states. The presence of F. prausnitzii can be indicative of a balanced microbial ecosystem, and its relative abundance has been linked to positive health outcomes.↵↵In summary, F. prausnitzii str. CNCM I 4574 exemplifies the complexity of gut microbiota interactions, highlighting the significance of anaerobic, chemoheterotrophic microorganisms in sustaining gut homeostasis and influencing host health. Further research into this strain could provide deeper insights into its beneficial functions and its potential applications in therapeutic contexts related to gut health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTX00000000.1 Bac0000442 Faecalibacterium prausnitzii "Faecalibacterium prausnitzii is a Gram-positive, rod-shaped anaerobic bacterium that thrives in the gastrointestinal tracts of humans and animals. It belongs to the category of mesophilic microorganisms, preferring temperatures between 25-37°C. This microbe is a heterotroph, meaning it obtains energy by breaking down organic compounds rather than producing its own. Specifically, it is a chemoheterotroph, using reducing power from the breakdown of carbohydrates, proteins, and fats to generate energy. Faecalibacterium prausnitzii is a slow-growing microorganism, producing energy through fermentation, a process that involves the conversion of organic compounds into simpler compounds, such as acetate, butyrate, and propionate. These fermentation products are then utilized by the host as energy sources. The bacterium is characterized by its Gram-positive staining, meaning its cell wall contains a thick peptidoglycan layer. Its rod-shaped morphology allows it to efficiently colonize the mucosal lining of the gastrointestinal tract. Faecalibacterium prausnitzii is a strict anaerobe, requiring an oxygen-free environment to thrive. In fact, it is an obligate anaerobe, meaning it is unable to survive in the presence of oxygen. Faecalibacterium prausnitzii is commonly found in the colonic mucosa of humans and animals, where it plays a crucial role in shaping the host's gut microbiome. Its presence has been linked to various health benefits, including the production of short-chain fatty acids that aid in the absorption of nutrients and the modulation of the immune system. Faecalibacterium prausnitzii has been identified as a dominant component of the human gut microbiome, where it contributes to the breakdown of complex carbohydrates and the regulation of the host's metabolic processes. Its importance is further underscored by the fact that changes in its population densities have been linked to various diseases, including inflammatory bowel disease and irritable bowel syndrome. Despite its importance, Faecalibacterium prausnitzii remains a poorly understood microbe, and further research is needed to uncover its full range of functions and interactions with its host." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 QVEZ00000000.1 Bac0000443 Faecalibacterium prausnitzii str. CNCM I 4544 "Faecalibacterium prausnitzii str. CNCM I 4544 is a Gram-positive, nonsporulating, rod-shaped bacterium that thrives as an anaerobe, with an optimal growth temperature of 37.0°C. This organism exhibits chemoheterotrophic metabolic capabilities, utilizing organic compounds as energy sources. ↵↵F. prausnitzii is typically found in various habitats, particularly within the human gastrointestinal tract, where it plays a significant role in maintaining gut health and homeostasis. Its presence is often associated with a balanced intestinal microbiota, suggesting its potential importance in various physiological functions, including the modulation of immune responses and the production of short-chain fatty acids, which are beneficial to host health.↵↵Given its anaerobic nature and optimal temperature, F. prausnitzii str. CNCM I 4544 exemplifies the physiological adaptations of gut microbiota to the anaerobic, warm environment of the intestines. This specialized niche and its metabolic strategies may contribute to its role in preventing dysbiosis and supporting metabolic health in the host. Understanding the traits of this strain could provide insights into its functionality within complex microbial communities and its potential implications for gut health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTU00000000.1 Bac0000444 Fusobacterium varium "Fusobacterium varium is a Gram-negative, anaerobic bacterium that thrives in a temperature range of 20-40°C, categorizing it as a mesophilic microbe. Its metabolic preferences lie in the realm of heterotrophy, relying on organic compounds as its primary energy source. Specifically, it employs a respiratory chain to generate energy, utilizing the reduction of inorganic compounds as the primary mechanism of energy production. The shape of F. varium is characterized by its fusiform, or spindle-shaped, morphology, with a length-to-width ratio of approximately 4:1. Its affinity for inhabiting various body sites across the human body, including the oral cavity, gut, and genital tract, makes it a ubiquitous microbe.As an obligate anaerobe, F. varium is unable to survive in the presence of oxygen, requiring a low-oxygen or anaerobic environment to thrive. Its inability to tolerate oxygen is likely due to the lack of a functional cytochrome aa3 oxygen reductase, which is necessary for the proper functioning of the electron transport chain. F. varium has been linked to various pathological conditions, including periodontitis, dental caries, and gut disorders. Its association with these conditions may be attributed to its ability to adhere to host cells, produce extracellular enzymes, and modulate the host's immune response. Furthermore, F. varium has been found to possess unique characteristics, such as its ability to utilize butyrate as a primary source of energy, and its capacity to form biofilms on host surfaces. Additionally, research has shown that F. varium can influence the gut microbiota by modulating the expression of genes involved in the metabolism of nutrients and the immune response. In conclusion, F. varium is a fascinating microbe that has adapted to thrive in a variety of environments within the human body. Its unique metabolic preferences, oxygen tolerance, and adaptive strategies have enabled it to play a significant role in various physiological and pathological processes." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium Negative Rod No 1 Anaerobe 37 Chemoheterotroph Multiple Nonsporulating 856 QRIG00000000.1 Bac0000445 Fusobacterium ulcerans "Fusobacterium ulcerans is a Gram-negative, obligate anaerobic bacterium that thrives in a temperature range of 37°C to 44°C, indicative of its human pathogenic nature. Metabolically, it is a chemoorganotroph, relying on the oxidation of organic compounds as its energy source. This microbe produces energy through the process of anaerobic respiration, specifically by utilizing the fermentation pathway. In terms of morphology, F. ulcerans is a rod-shaped bacterium, typically measuring 20-50 μm in length and 0.5-1.0 μm in width. Its ability to inhabit various body sites, including the gastrointestinal tract, genitourinary tract, respiratory tract, and soft tissues, highlights its versatility and adaptability. The Gram stain categorizes F. ulcerans as a Gram-negative bacterium, characterized by its thin peptidoglycan layer and outer membrane. This layer provides limited resistance to antibiotics and antimicrobial peptides, making it challenging to treat infections caused by this microbe. F. ulcerans is found in all body sites of its host, often in association with other microorganisms. Its anaerobic nature necessitates an oxygen-free environment, and it is well-suited to thrive in the anaerobic niches of the human body, such as the gut and abscesses. In its natural habitat, F. ulcerans is an obligate anaerobe, unable to survive in the presence of oxygen. However, it can tolerate low levels of oxygen, which may be beneficial in adapting to its various ecological niches. F. ulcerans is notorious for causing necrotizing fasciitis, a severe and potentially life-threatening skin infection. This microbe's ability to secrete potent extracellular enzymes, such as collagenase and gelatinase, enables it to degrade and destroy tissue, leading to extensive necrosis and tissue destruction." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium ulcerans Negative Anaerobe rumen fluid 861 NZ_CP028105.1 Bac0000446 Desulfovibrio desulfuricans str. IC1 "Desulfovibrio desulfuricans str. IC1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is characterized as a facultative anaerobe, allowing it to thrive in environments with varying oxygen levels. D. desulfuricans str. IC1 has been isolated from diverse habitats, indicating its versatile metabolic capabilities and adaptability to different ecological niches.↵↵Facultative anaerobes like D. desulfuricans str. IC1 can utilize both aerobic and anaerobic respiration, which may contribute to its success in fluctuating environments. The ability to survive in the presence or absence of oxygen suggests that this microorganism plays a significant role in biogeochemical cycling, particularly in the sulfur cycle, where it may participate in sulfate reduction processes. By converting sulfate to sulfide, D. desulfuricans str. IC1 may influence the availability of sulfur compounds in its habitat, which can have broader implications for nutrient cycling and microbial community dynamics.↵↵Overall, the physiological traits of Desulfovibrio desulfuricans str. IC1 highlight its ecological versatility and potential significance in microbial processes related to sulfur metabolism." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans Negative Rod No 1 2 Facultative anaerobe Mesophilic Multiple Free living Singles Human 876 NZ_CP036295.1 Bac0000447 Halodesulfovibrio aestuarii "Halodesulfovibrio aestuarii is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism and typically exists as single cells. This microbe thrives optimally at a temperature of 32.0°C, indicating a preference for mesophilic conditions. Its ability to adapt to various habitats suggests a versatile ecological role, allowing it to inhabit environments where oxygen availability fluctuates.↵↵The facultative anaerobic nature of Halodesulfovibrio aestuarii enables it to utilize both aerobic and anaerobic metabolic processes, which may contribute to its survival in diverse ecological niches. This adaptability might allow the organism to participate in various biogeochemical cycles, particularly in environments where organic matter is abundant and oxygen levels are variable.↵↵Given its unique physiological traits, Halodesulfovibrio aestuarii could play a significant role in the degradation of organic compounds in sedimentary environments, where it may interact with other microbial communities. Such interactions could facilitate nutrient cycling and contribute to ecosystem functions, highlighting the importance of this organism in its native habitats." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio aestuarii Negative Rod No 1 2 Facultative anaerobe 32 Mesophilic Multiple Free living Singles Human 876 FQZR00000000.1 Bac0000448 Desulfovibrio desulfuricans "Desulfovibrio desulfuricans is a microorganism that thrives in a variety of environments, exhibiting a range of characteristics that enable its survival and success. It belongs to the temperature preference category of psychrophiles, tolerating temperatures between 0°C and 20°C. This microbe is a chemotroph, relying on chemical energy sources rather than light, and more specifically, it is a chemoheterotroph, as it derives its energy from the oxidation of organic compounds. Desulfovibrio desulfuricans is capable of producing energy through anaerobic respiration, using a variety of methods including sulfate reduction, iron oxidation, and sulfur reduction. The bacterium stains Gram-negative, indicating the presence of an outer membrane and a thin peptidoglycan layer. Its shape is typically bacterium-like, with a rod-like or vibrio morphology. It can be found in various body sites, including the human gut, soil, and aquatic environments. Desulfovibrio desulfuricans is an obligate anaerobe, requiring the absence of oxygen to survive, and is sensitive to even low levels of oxygen. Desulfovibrio desulfuricans has adapted to its environment through a range of strategies. Its ability to tolerate low temperatures and anaerobic conditions makes it a key player in ecosystems where these conditions prevail. Furthermore, its capacity for sulfate reduction plays a crucial role in the global sulfur cycle, alongside its role in the degradation of organic matter in anaerobic environments. This microbe's unique characteristics have also led to its use in biotechnological applications, such as the treatment of industrial waste and the production of biofuels." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans Negative Rod No 1 2 Facultative anaerobe Mesophilic Multiple Free living Singles Human 876 FPIW00000000.1 Bac0000449 Desulfovibrio sp. Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. rumen 885 PARK00000000.1 Bac0000450 Desulfuromonas sp. Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. anaerobic 892 PKUB00000000.1 Bac0000451 Nitrosomonas eutropha str. Nm 57 "Nitrosomonas eutropha str. Nm 57 is a Gram-negative, chemolithotrophic, and autotrophic bacterium that exhibits a characteristic cell arrangement of singles and chains. As an aerobic microorganism, it requires oxygen for its metabolic processes, which are primarily centered on the oxidation of ammonia to nitrite, a critical step in the nitrogen cycle. This strain thrives in diverse habitats, suggesting a broad ecological adaptability that can facilitate its role in various nitrogen-rich environments.↵↵The ability of Nitrosomonas eutropha str. Nm 57 to utilize inorganic compounds as energy sources underscores its significance in biogeochemical processes, particularly in soil and aquatic systems where nitrogen cycling is essential. By contributing to the conversion of ammonia, this bacterium plays a vital role in mitigating nitrogen accumulation, potentially reducing the impacts of eutrophication in aquatic ecosystems. The presence of this strain in multiple habitats emphasizes its ecological versatility and importance in maintaining nitrogen balance in various environments." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas eutropha Negative Yes 1 2 Aerobe Chemolithotroph - Autotroph Mesophilic Multiple Free living Chains - Singles 916 QICQ00000000.1 Bac0000452 Acidithiobacillus ferrooxidans str. IO-2C "Acidithiobacillus ferrooxidans str. IO-2C is a Gram-negative, nonsporulating bacterium characterized by its spirilla shape. This organism is an obligate chemoautolithotroph, deriving energy from the oxidation of ferrous iron, which allows it to thrive in specialized habitats rich in metallic minerals. Optimal growth of A. ferrooxidans str. IO-2C occurs at a temperature of 30.0 °C, indicating a preference for moderate thermal conditions. As an aerobe, it requires oxygen for respiration, which is essential for its metabolic processes.↵↵The specialized habitat of A. ferrooxidans str. IO-2C is likely linked to its ability to oxidize iron and other inorganic compounds, a trait that plays a critical role in biogeochemical cycling, particularly in iron-rich environments. This metabolic capability not only contributes to the organism’s survival but also underlines its potential influence in the bioleaching industry, where it may be utilized for the extraction of metals from ores. Overall, the traits of A. ferrooxidans str. IO-2C highlight its adaptations to specific ecological niches and its significance in the cycling of elements in acidic and mineral-rich environments." Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferridurans Negative Spirilla No 1 2 Aerobe 30 Obligate chemoautolithotroph Mesophilic Specialized Free living Nonsporulating 920 PQJK00000000.1 Bac0000453 Acidithiobacillus ferrooxidans str. BY0502 "Acidithiobacillus ferrooxidans str. BY0502 is a Gram-negative, spirilla-shaped bacterium that exhibits obligate chemoautolithotrophic metabolism, utilizing inorganic compounds as its primary energy source. This strain thrives optimally at a temperature of 30.0°C and requires oxygen for growth, categorizing it as an aerobic microorganism. ↵↵A. ferrooxidans str. BY0502 is nonsporulating, which indicates that it does not form spores as a means of surviving adverse environmental conditions. Instead, its specialized habitat suggests adaptation to environments where it can exploit its unique metabolic capabilities, likely involving the oxidation of iron and sulfur compounds. These traits underscore its potential role in biogeochemical cycling, particularly in acid mine drainage systems, where it is known to contribute to the bioleaching of metals and the acidification of the surrounding environment.↵↵Understanding the physiological and ecological traits of A. ferrooxidans str. BY0502 can provide insights into its potential applications in bioleaching processes and environmental remediation strategies. This strain exemplifies the intricate relationships between microbial metabolism and mineral processing, highlighting the importance of microbes in shaping geochemical cycles in specialized habitats." Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans Negative Spirilla No 1 2 Aerobe 30 Obligate chemoautolithotroph Mesophilic Specialized Free living Nonsporulating 920 LVXZ00000000.1 Bac0000454 Bdellovibrio bacteriovorus str. SSB218315 "Bdellovibrio bacteriovorus str. SSB218315 is a Gram-negative, curved rod bacterium that typically forms filamentous arrangements. This strain thrives in aerobic environments and demonstrates optimal growth at a temperature of 30.0°C. B. bacteriovorus is commonly found in freshwater habitats, including soil, surface water, and specific locations such as the Tiber River and the Upper Oconee River Watershed.↵↵The unique morphology of B. bacteriovorus, characterized by its curved rod shape and filamentous structures, may contribute to its ecological role in these environments. As a member of the Bdellovibrio genus, this microbe is known for its predatory behavior, specifically targeting and invading other Gram-negative bacteria. This predation plays a critical role in regulating microbial populations within its habitat, potentially influencing community dynamics and nutrient cycling. ↵↵The presence of B. bacteriovorus str. SSB218315 in diverse freshwater ecosystems underscores its ecological significance, as it may help control bacterial populations and maintain the balance of microbial communities. Understanding the traits and behaviors of this strain provides valuable insights into its potential applications in biocontrol and microbiome management." Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus negative Curved rod Yes 1 aerobic 30 Fresh water; soil; surface water; Tiber River; Upper Oconee River Watershed Filaments 959 NZ_CP020946.1 Bac0000455 Bdellovibrio bacteriovorus "Bdellovibrio bacteriovorus is a Gram-negative, curved rod-shaped bacterium known for its unique predatory lifestyle, primarily inhabiting freshwater environments, soil, and surface water, including specific locations such as the Tiber River and the Upper Oconee River Watershed. This microbe typically forms filamentous arrangements, which may facilitate its motility and interactions within its ecological niche. ↵↵Optimal growth conditions for Bdellovibrio bacteriovorus are observed at a temperature of approximately 30.0°C, indicating its adaptation to mesophilic environments. As an aerobic organism, it relies on oxygen for its metabolic processes, which is consistent with its habitat preferences, where oxygen levels are conducive to its survival and activity.↵↵Bdellovibrio bacteriovorus is particularly notable for its predatory behavior, targeting other Gram-negative bacteria, which positions it as a potential biocontrol agent in microbial communities. The ecological role of this microbe may extend beyond mere predation; it could significantly influence the dynamics of bacterial populations in freshwater ecosystems, contributing to nutrient cycling and the maintenance of microbial diversity. Its unique predatory lifestyle underscores the complex interactions within aquatic microbiomes, highlighting the potential for harnessing such organisms in biotechnological applications aimed at managing pathogenic bacteria in various environments." Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus negative Curved rod Yes 1 aerobic 30 Fresh water; soil; surface water; Tiber River; Upper Oconee River Watershed Filaments 959 LUKD00000000.1 Bac0000456 Bacteriovorax stolpii "Bacteriovorax stolpii is a Gram-negative bacterium characterized by its curved rod shape and optimal growth temperature of 25.0°C. This microbe is predominantly found in freshwater environments, as well as in the gut of various organisms and within soil ecosystems. ↵↵The presence of B. stolpii in diverse habitats suggests its potential role in nutrient cycling and microbial interactions within these environments. Its adaptation to freshwater and soil indicates a capability to thrive in fluctuating conditions, which may be critical for its survival and ecological function. ↵↵Understanding the ecological role of Bacteriovorax stolpii may provide insights into its interactions with other microorganisms, particularly in maintaining microbial diversity and functioning within aquatic and terrestrial ecosystems. This bacterium's unique morphology and habitat preferences may contribute to its role in the biodegradation of organic materials, further underscoring its potential importance in microbial ecology." Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii Gram-negative Curved rod 1 25 mesophilic Fresh water; gut; soil 960 NZ_CP025704.1 Bac0000457 Herbaspirillum seropedicae str. AG215 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum seropedicae rhizosphere 964 SOSE00000000.1 Bac0000458 Herbaspirillum seropedicae str. AU13965 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum seropedicae rhizosphere 964 NZ_CP034395.1 Bac0000459 Pseudoselenomonas ruminantium "Pseudoselenomonas ruminantium is a Gram-negative, nonsporulating anaerobic bacterium that thrives as a chemoheterotroph, primarily residing in the intestinal microflora of animals. This organism is optimally adapted to a temperature of 37.0°C, which aligns with the physiological conditions typically found in the gastrointestinal tract of warm-blooded hosts. The inability to form spores suggests that P. ruminantium may rely on stable environmental conditions within the host for survival and reproduction.↵↵As a member of the intestinal microbiota, P. ruminantium plays a significant role in the digestive processes of its host, contributing to the fermentation of organic materials and the maintenance of gut health. The anaerobic nature of this bacterium indicates its adaptation to low-oxygen environments, which are prevalent in the intestinal lumen. This adaptation may facilitate its interactions with other microorganisms within the gut ecosystem, potentially influencing microbial community dynamics and metabolic processes.↵↵Understanding the specific functions and interactions of Pseudoselenomonas ruminantium within the intestinal microbiome can provide insights into its contributions to host metabolism and overall gut health. Further research may elucidate its role in nutrient absorption and the maintenance of microbial balance, highlighting the intricate relationships between intestinal bacteria and their animal hosts." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas ruminantium Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 971 FOQK00000000.1 Bac0000460 Cellulophaga lytica str. DAU203 "Cellulophaga lytica strain DAU203 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and exhibits optimal growth at a temperature of 25.0°C. This strain is characterized as a heterotrophic chemotroph, indicating its reliance on organic compounds as an energy source, which it metabolizes through chemical means. ↵↵Cellulophaga lytica is notable for its role in the degradation of complex organic materials, particularly in environments where cellulose is abundant. This trait suggests its potential utility in biotechnological applications focused on waste management and biofuel production, where efficient breakdown of plant materials is crucial. Moreover, the bacterium's aerobic metabolism may influence its ecological interactions, particularly in oxygen-rich environments where it can outcompete other microbes for organic substrates.↵↵The specific growth temperature of 25.0°C aligns with its potential isolation from temperate environments, where it may play an essential role in nutrient cycling. Understanding the metabolic pathways and ecological niches of Cellulophaga lytica strain DAU203 could provide valuable insights into microbial community dynamics and the decomposition processes in various ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga lytica Gram-negative rod aerobic 25 heterotroph; chemotroph mesophilic 979 NZ_CP015172.1 Bac0000461 Flavobacterium johnsoniae str. CI04 "Flavobacterium johnsoniae strain CI04 is a nonsporulating, rod-shaped, Gram-negative bacterium that thrives in aerobic environments, with an optimal growth temperature of 20.0°C. This species is part of a diverse group of microorganisms that can inhabit multiple ecological niches, indicating a versatile adaptability to varying environmental conditions. ↵↵The nonsporulating nature of F. johnsoniae CI04 suggests that it relies on vegetative growth rather than spore formation for survival and reproduction, which may influence its ecological strategies in nutrient acquisition and competition with other microorganisms. The ability to grow optimally at a relatively low temperature points to its potential role in cooler habitats, possibly including aquatic systems or soil environments that experience moderate temperatures.↵↵Given its aerobic requirement, F. johnsoniae CI04 likely plays a significant role in the cycling of organic matter and nutrients in its habitat, contributing to the overall microbial community dynamics. This bacterium may be involved in the degradation of complex organic compounds, highlighting its ecological importance in biogeochemical processes. Further studies could elucidate its specific interactions within microbial communities and its potential applications in biotechnology, particularly in the context of bioremediation or organic matter decomposition in cooler ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae Negative Rod No 1 2 Aerobe 20 Mesophilic Multiple Free living Nonsporulating 986 MLFK00000000.1 Bac0000462 Marinilabilia salmonicolor str. 160A Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Marinilabilia Marinilabilia salmonicolor 989 QPIZ00000000.1 Bac0000463 Flavobacterium hydatis str. DSM 2063 "Flavobacterium hydatis strain DSM 2063 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. As a member of the Flavobacteriaceae family, this organism exhibits characteristics typical of its genus, including a distinctive yellow pigmentation that is often associated with its metabolic processes. The Gram-negative cell wall structure of F. hydatis contributes to its sensitivity to certain antibiotics and its ability to survive in diverse aquatic environments.↵↵This bacterium's optimal growth temperature of 25.0°C suggests a preference for mesophilic conditions, indicating that it may be well-adapted to temperate aquatic habitats. F. hydatis is likely involved in the decomposition of organic matter within these environments, contributing to nutrient cycling and potentially influencing microbial community dynamics.↵↵Additionally, the presence of this microorganism in freshwater ecosystems may play a role in the degradation of complex organic compounds, which can enhance the availability of nutrients for other organisms within the ecosystem. The metabolic capabilities of Flavobacterium hydatis strain DSM 2063 can thus provide insights into the ecological functions of microbial communities in aquatic systems, highlighting its potential importance in biogeochemical processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium hydatis Gram-negative rod motile 25 mesophilic 991 JPRM00000000.1 Bac0000464 Flavobacterium columnare "Flavobacterium columnare is a mesophilic, chemoheterotrophic, Gram-negative bacterium that thrives in a temperature range of 15-30°C (59-86°F). As a chemoheterotroph, it produces energy by breaking down organic compounds, relying on external sources of carbon and energy. This microbe is capable of fermentative metabolism, utilizing energy from the degradation of complex organic molecules. F. columnare is a rod-shaped bacterium, typically measuring 0.5-1.5 μm in length and 0.2-0.4 μm in width. The bacterium's cell wall is negative when stained with Gram stain, meaning it lacks a thick peptidoglycan layer. This characteristic, along with its rod shape, is typical of many Gram-negative bacteria. F. columnare has been found to inhabit a wide range of environments, including aquatic ecosystems, soil, and the gastrointestinal tracts of various animals, including fish and humans. F. columnare is an obligate aerobe, requiring the presence of oxygen to survive. In its natural habitat, it likely thrives in well-oxygenated environments, exploiting the abundance of organic matter and oxygen. Notably, this microbe has been associated with various diseases, including skin and soft tissue infections, as well as ocular infections in humans. Despite its potential pathogenicity, F. columnare has also been found to play a vital role in decomposing organic matter, breaking down complex compounds into simpler substances. Its ability to degrade organic matter makes it an important component of aquatic ecosystems, contributing to the cycling of nutrients and the maintenance of ecosystem balance. Studies have also shown that F. columnare possesses a unique antibiotic resistance mechanism, which enables it to survive in environments where other microorganisms would be unable to thrive. This remarkable adaptability underscores the importance of continued research into the biology and ecology of this fascinating microbe, allowing us to better understand its role in shaping our natural and medical environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium columnare Negative Rod Yes 1 Chemoheterotroph Mesophilic Multiple Nonsporulating 996 OLKH00000000.1 Bac0000465 Thermoflexibacter ruber Pseudomonadati Bacteroidota Cytophagia Cytophagales Thermoflexibacteraceae Thermoflexibacter Thermoflexibacter ruber 1003 FONY00000000.1 Bac0000466 Sphingobacterium mizutaii "Sphingobacterium mizutaii is a Gram-negative, rod-shaped bacterium that thrives in activated sludge environments, with an optimal growth temperature of 30.0°C. This species belongs to the genus Sphingobacterium, which is characterized by its ability to degrade complex organic compounds and contribute to the biogeochemical cycling of nutrients in aquatic ecosystems. ↵↵The rod shape of S. mizutaii is typical of many members of the Sphingobacterium genus, which often exhibit diverse metabolic capabilities that allow them to adapt to varying ecological niches. The organism's Gram-negative status indicates a unique cell wall structure, which may influence its interactions with surrounding microorganisms and its resilience in fluctuating environmental conditions.↵↵As Sphingobacterium mizutaii occupies the niche of activated sludge, it plays a potential role in wastewater treatment processes by aiding in the breakdown of organic matter. This capability underscores its importance in bioremediation and environmental management. The adaptation to a specific temperature range highlights the species' ecological preference and potential implications for its activity in natural and engineered aquatic systems. Understanding the traits of S. mizutaii can inform strategies for optimizing microbial communities in wastewater treatment and enhancing the efficiency of nutrient cycling in these environments." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium mizutaii negative Rod 30 activated sludge 1010 FNGK00000000.1 Bac0000467 Capnocytophaga gingivalis "Capnocytophaga gingivalis is a microbe that thrives in a temperature range of 25-37°C, which is considered mesophilic, allowing it to inhabit various environments within the human body. Metabolically, it is a heterotroph, utilizing organic compounds as its energy source. Specifically, it is a chemo-heterotroph, breaking down complex organic molecules to produce energy through cellular respiration. As a chemo-heterotroph, C. gingivalis produces energy through the breakdown of organic compounds, releasing CO2 and H2O as byproducts. It is also a facultative anaerobe, meaning it can survive in the presence or absence of oxygen. However, it grows more efficiently in anaerobic conditions, suggesting a preference for reduced oxygen levels. Gram-staining reveals that C. gingivalis is a Gram-negative bacterium, characterized by its thin peptidoglycan layer. Its shape is typically curved or spiral, resembling a comma or a corkscrew, making it easily distinguishable under a microscope. C. gingivalis can be found in various body sites, including the mouth, throat, and respiratory tract, as well as on the skin and in the gut. As an opportunistic pathogen, C. gingivalis is capable of causing infections in compromised hosts, particularly those with poor oral hygiene or weakened immune systems. In rare cases, it can also be responsible for invasive infections, such as sepsis and meningitis. Despite its potential pathogenicity, C. gingivalis is also recognized for its role in the normal oral microbial flora, contributing to the breakdown of complex carbohydrates and the formation of biofilms. In fact, its ability to adhere to surfaces and form complex communities has led researchers to explore its potential use in biofilm-based applications, such as wound healing and biocorrosion prevention." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga gingivalis negative Rod No 1 anaerobic Chemoheterotroph Host gut Nonsporulating 1017 NZ_CP022386.1 Bac0000468 Afipia felis "Afipia felis is a Gram-negative, rod-shaped bacterium primarily found in hospital water environments. This organism is aerobically metabolizing, indicating that it requires oxygen for its growth and survival. The presence of A. felis in hospital water suggests a potential link to healthcare-associated environments, which may facilitate its persistence in these settings. ↵↵As a member of the microbial community residing in hospital water systems, A. felis may play a role in the complex interactions between microorganisms and their aquatic habitats. Its aerobic nature likely contributes to the dynamics of nutrient cycling within these environments, influencing the overall microbial diversity and potentially affecting water quality. Further research on A. felis could provide insights into its ecological role and adaptive mechanisms in hospital water systems, which are critical for maintaining hygiene and preventing the proliferation of other opportunistic pathogens." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia felis negative Rod Yes 1 aerobic hospital water 1035 UIGB00000000.1 Bac0000469 Erythrobacter sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. aerobic Marine; southern sea of GeoJe 1042 NZUG00000000.1 Bac0000470 Marichromatium gracile str. DSM 203 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Marichromatium Marichromatium gracile anaerobic 1048 SMDC00000000.1 Bac0000471 Halorhodospira halochloris str. DSM 1059 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Halorhodospira Halorhodospira halochloris anaerobic 1052 NZ_AP017372.2 Bac0000472 Rhodobacter capsulatus "Rhodobacter capsulatus is a psychrophilic, phototrophic bacterium that thrives in environments with temperatures ranging from 4 to 30°C. This microbe is capable of producing energy through photosynthesis, utilizing light as its energy source. As a phototroph, R. capsulatus is able to convert light energy into chemical energy, which is then used to power its metabolic processes. R. capsulatus is a Gram-negative bacterium, characterized by its distinctive shape, which is typically rod-shaped or ovoid. Its cells are typically found in a variety of environments, including soil, water, and even the human body, where it can be found in the respiratory tract and gut. This microbe is an obligate aerobic, meaning it requires oxygen to survive and grow. However, it is capable of tolerating low oxygen levels, making it a microaerophile. R. capsulatus is also capable of producing ATP through the process of chemiosmosis, which is the movement of protons across a membrane to generate energy. In addition to its unique metabolic processes, R. capsulatus has also been found to have a number of biological and ecological roles. For example, it has been used as a model organism in the study of nitrogen fixation and has been found to play a key role in the decomposition of organic matter in aquatic environments. In the human body, R. capsulatus has been found to play a role in the colonization of the gut and respiratory tract, where it has been linked to a number of diseases, including respiratory infections and gastrointestinal disorders. Despite its potential pathogenic capabilities, R. capsulatus is an important microbe that has contributed significantly to our understanding of microbial ecology and metabolism." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter capsulatus Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Aquatic Nonsporulating 1061 FNAY00000000.1 Bac0000473 Cereibacter sphaeroides str. AB24 "Cereibacter sphaeroides str. AB24 is a Gram-negative, rod-shaped bacterium that typically forms chains and exhibits a versatile metabolic profile, utilizing photosynthesis as its primary energy source. This strain thrives optimally at a temperature of 25.0°C and can adapt to both aerobic and anaerobic conditions, showcasing its metabolic flexibility. ↵↵Cereibacter sphaeroides str. AB24 can be found in multiple habitats, indicating its capability to colonize diverse environments, which may include aquatic systems or soil. The organism's photosynthetic ability suggests a role in carbon cycling within its ecosystem, potentially contributing to the primary production in its habitat. ↵↵This adaptability not only highlights the ecological resilience of C. sphaeroides str. AB24 but also points to its potential importance in microbial communities, where it may interact with other microorganisms and contribute to biogeochemical processes. Such traits enable it to occupy various niches, enhancing its survival and ecological significance in fluctuating environmental conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 1063 NZ_CP033434.1 Bac0000474 Cereibacter sphaeroides "Cereibacter sphaeroides is a Gram-negative, rod-shaped bacterium that typically forms chains and exhibits metabolic versatility as both an aerobe and an anaerobe. This organism has an optimal growth temperature of 25.0 °C and is capable of photosynthesis, utilizing light as an energy source. Cereibacter sphaeroides is found in multiple habitats, indicating its adaptability to various environmental conditions.↵↵The ability of Cereibacter sphaeroides to thrive in diverse settings while employing both aerobic and anaerobic metabolic pathways suggests a significant ecological role in nutrient cycling and energy flow within its ecosystems. Its photosynthetic capabilities may allow it to contribute to primary production in environments where light is available, potentially influencing the microbial community structure and dynamics. This versatility highlights the bacterium's potential importance in ecological interactions, particularly in environments where oxygen levels fluctuate or are limited." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 1063 QFQS00000000.1 Bac0000475 Rhodopila globiformis "Rhodopila globiformis is a coccus-shaped anaerobic microbe found predominantly in strongly acidic and sulfidic habitats, such as the acidic warm springs of Lassen Volcanic National Park and Yellowstone National Park in the USA. This microorganism thrives in environments characterized by a pH range of 3 to 4, which are typical of microbial mats associated with these unique geothermal settings. ↵↵The ability of Rhodopila globiformis to inhabit such extreme conditions suggests that it has specialized metabolic pathways that allow it to utilize the available resources in these low-pH ecosystems effectively. The presence of this microbe in sulfidic springs indicates a potential role in biogeochemical cycling, particularly concerning sulfur compounds in acidic environments. ↵↵Understanding the physiology and ecological role of Rhodopila globiformis may provide insights into the adaptations required for life in extreme conditions and its contributions to the microbial community structure and function in acidic thermal springs. The study of such extremophiles is crucial for unraveling the complexities of microbial life and its resilience in harsh environments, as well as for potential biotechnological applications in bioremediation or bioenergy production in similarly extreme habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Rhodopila Rhodopila globiformis Coccus Yes anaerobic acid spring; acidic warm spring; Lassen Volcanic National Park; microbial mat; spring; spring in Lassen Volcanic National Park (USA); strongly acidic habitats; sulfidic and acidic (pH 3-4) spring; sulfidic spring; Yellowstone; Yellowstone National Park 1071 NHRY00000000.1 Bac0000476 Blastochloris viridis "Blastochloris viridis is a Gram-negative, anaerobic bacterium notable for its unique metabolic capabilities. This microbe thrives in environments devoid of oxygen, suggesting a specialized niche that may involve the utilization of alternative electron acceptors for energy production. The anaerobic nature of B. viridis implies that it is adapted to specific ecological contexts where oxygen is limited or absent, potentially influencing the microbial community dynamics in its habitat.↵↵As a Gram-negative organism, B. viridis possesses a distinctive cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this classification. This structural feature may confer specific advantages in terms of resistance to certain antimicrobial agents and environmental stresses, although the exact implications of this trait in natural settings remain to be fully elucidated.↵↵Overall, the anaerobic lifestyle of Blastochloris viridis positions it as a potential participant in biogeochemical cycles, including those related to carbon and sulfur. Its ability to thrive in low-oxygen environments might contribute to the degradation of organic matter in anaerobic ecosystems, thereby playing a role in nutrient recycling and energy flow. Further research into the metabolic pathways and ecological interactions of B. viridis could provide deeper insights into its functional significance within anaerobic microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Blastochloridaceae Blastochloris Blastochloris viridis negative anaerobic 1079 NZ_LN907867.1 Bac0000477 Chlorobium limicola str. Frasassi "Chlorobium limicola strain Frasassi is a Gram-negative, rod-shaped bacterium that typically exists in chains or as single cells, and is known for its photosynthetic capabilities as a photoautotroph. This organism thrives in aquatic environments, where it plays a significant role in the cycling of nutrients and energy within its ecosystem. As an anaerobe, Chlorobium limicola strain Frasassi relies on light for energy while utilizing carbon dioxide for growth, contributing to the biological processes in light-limited habitats.↵↵The ability of this strain to perform photosynthesis in anaerobic conditions suggests a unique adaptation to its environment, allowing it to exploit light energy in settings where oxygen is scarce. This trait not only highlights its ecological role in aquatic ecosystems but also underscores the importance of anaerobic phototrophs in global carbon cycling. By converting light energy into chemical energy, Chlorobium limicola strain Frasassi aids in the sustenance of microbial communities, potentially influencing the dynamics of food webs in its habitat." Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola Negative Rod No 1 2 Anaerobe Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Chains - Singles 1092 LMBR00000000.1 Bac0000478 Chlorobium phaeovibrioides str. BrKhr17 Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides anaerobic 1094 RXYK00000000.1 Bac0000479 Pelodictyon luteolum "Pelodictyon luteolum is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an anaerobe, indicating its growth in the absence of oxygen. This microbe is known to inhabit diverse environments, suggesting a degree of ecological versatility. ↵↵As an anaerobic organism, Pelodictyon luteolum is likely adapted to environments where oxygen levels are low or absent, such as in sediment or within certain microbial mats. Its rod shape may contribute to its motility and ability to colonize varied substrates, enhancing its survival in competitive microbial communities. ↵↵The presence of Pelodictyon luteolum in multiple habitats underscores its ecological significance, potentially playing roles in biogeochemical cycles or contributing to microbial diversity in anaerobic ecosystems. Understanding the specific conditions under which this bacterium flourishes can provide insights into its potential interactions within microbial consortia and its broader impact on environmental processes." Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum Negative Rod No Anaerobe 25 Mesophilic Multiple 1100 LVWG00000000.1 Bac0000480 Synechococcus elongatus PCC 7942 = FACHB-805 "Synechococcus elongatus PCC 7942, also known as FACHB-805, is a Gram-negative, rod-shaped cyanobacterium that exhibits a versatile growth pattern, forming both single cells and chains. This microbe thrives in aquatic environments and is classified as a photoautotroph, utilizing light as its primary energy source for growth and metabolism. Additionally, it demonstrates facultative oxygen requirements, allowing it to adapt to varying oxygen levels in its habitat.↵↵The photosynthetic capabilities of Synechococcus elongatus PCC 7942 enable it to contribute significantly to primary production in aquatic ecosystems, where it plays a crucial role in carbon fixation. The organism's ability to form chains may enhance its survival and adaptability in diverse aquatic environments by promoting nutrient uptake and facilitating buoyancy.↵↵Given its ecological role, Synechococcus elongatus PCC 7942 serves as an important model organism for studying photosynthesis and microbial ecology. Its adaptability to different oxygen concentrations reflects the dynamic nature of aquatic habitats and underscores the potential impact of environmental changes on microbial community structures. This adaptability may also provide insights into the evolution of photosynthetic organisms in fluctuating environments." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus elongatus Negative Rod Yes 1 2 Facultative Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Chains - Singles 1140 NC_007604.1 Bac0000481 Synechocystis sp. PCC 6714 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Merismopediaceae Synechocystis Synechocystis sp. PCC 6714 Yes Fresh water 1147 NZ_CP007542.1 Bac0000482 Synechocystis sp. PCC 6803 "Synechocystiae are unicellular, photoautotrophic, facultative glucose-heterotrophic cyanobacteria. They are oxygenic photosynthetic with two photosystems at their disposal, similar to those in algae and plants, and they can fix nitrogen.Nodule formation (on the stem or the root of the plant) is the result of tissue proliferation induced by the rhizobia via growth promoters (e.g., cytokines) enabling the plant to convert gaseous nitrogen into combined nitrogen. This fixation process leads to significant increases in combined nitrogen in the soil.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Merismopediaceae Synechocystis Synechocystis sp. PCC 6803 PCC 6803 Negative Cocci Yes 1 2 Facultative Photosynthetic- Photoautotroph Mesophilic Aquatic Free living Singles No 1148 NC_000911.1 Bac0000483 Pseudanabaena sp. Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Pseudanabaena Pseudanabaena sp. Lake Salubria; reservoir 1153 DNLA00000000.1 Bac0000484 Tolypothrix sp. PCC 7601 str. PCC 7601 = UTEX B 481 Bacillati Cyanobacteriota Cyanophyceae Nostocales Tolypothrichaceae Tolypothrix Tolypothrix sp. PCC 7601 1188 AGCR00000000.1 Bac0000485 Nitrosospira multiformis "Nitrosospira multiformis is a gram-negative, spiral-shaped bacterium that thrives in mesophilic temperature ranges, functioning as a chemolithoautotroph, and is classified as a microaerophile. This microbe is primarily found in soil and aquatic environments, where it plays a crucial role in the nitrogen cycle. Its ability to oxidize ammonia to nitrite makes it a significant component of nitrification processes, helping to transform nitrogen compounds into forms that can be utilized by plants. Being gram-negative, Nitrosospira multiformis possesses a thin peptidoglycan layer and an outer membrane, characteristics that contribute to its resilience in diverse environments. Its spiral shape is adapted for motility, allowing it to navigate through aqueous environments efficiently. As a mesophilic organism, it prefers moderate temperature conditions, typically between 20–30 degrees Celsius, which aligns with most environmental niches where it is found. As a chemolithoautotroph, Nitrosospira multiformis derives energy from the oxidation of inorganic compounds, specifically ammonia, enabling it to grow in nutrient-poor environments where organic substrates might not be readily available. Its classification as a microaerophile is significant; it requires low levels of oxygen for optimal growth, which differentiates it from obligate aerobes and anaerobes. This oxygen dependency influences its habitat preferences, often found in environments like wastewater treatment facilities or nutrient-rich marine sediments, where oxygen levels may vary. In addition to its ecological roles, Nitrosospira multiformis has garnered attention for its potential applications in bioengineering and sustainable agriculture, particularly in the development of nitrogen-efficient farming practices. This ability to efficiently convert ammonia into nitrite not only supports plant growth but also offers a pathway to reduce nitrogen runoff, thus minimizing environmental impact." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis Negative Yes 1 2 Aerobe Lithotroph - Autotroph Mesophilic Terrestrial Free living 1231 FPBZ00000000.1 Bac0000486 Nitrosovibrio tenuis Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosovibrio Nitrosovibrio tenuis 1233 FOBH00000000.1 Bac0000487 Piscirickettsia salmonis str. PM15972A1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsia Piscirickettsia salmonis 1238 NZ_CP012416.1 Bac0000488 Piscirickettsia salmonis str. PM32597B1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsia Piscirickettsia salmonis 1238 NZ_CP012511.1 Bac0000489 Leuconostoc lactis "Leuconostoc lactis is a Gram-positive, coccoid-shaped bacterium that thrives in moderate temperature ranges, making it a mesophilic microbe. As a heterotroph, it derives energy from organic compounds, predominantly fermenting sugars to produce lactic acid. This organism is predominantly found in dairy products, particularly in fermented milks and cheeses, where it plays a critical role in flavor and texture development.Leuconostoc lactis has a unique ability to ferment lactose and other carbohydrates, a characteristic that has made it invaluable in the dairy industry. Its fermentation process produces not only lactic acid but also the volatile compounds that contribute to the complexity of flavors in fermented dairy products. As a facultative anaerobe, Leuconostoc lactis can thrive in both aerobic and anaerobic conditions, allowing it to survive in varied environments, including the anaerobic conditions often found in the intestines of animals where it can also be isolated. In addition to its applications in the food industry, Leuconostoc lactis is recognized for its role in food preservation due to its acid-producing capabilities, which can inhibit the growth of spoilage organisms and pathogens. This organism is often used as a starter culture in the production of sauerkraut and pickles, enhancing their flavor and extending shelf life.Recent studies suggest potential health benefits of Leuconostoc lactis, especially in promoting gut health and contributing to a balanced microbiome. It is also explored for possible probiotic properties, hinting at its potential to enhance human health through dietary inclusion of fermented foods." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc lactis Positive Coccus Facultative anaerobe cheese; dairy; dairy products; fermented foods; food products; kimchi; meat; milk; Milk; vegetables; whey; wine Nonsporulating 1246 LJIV00000000.1 Bac0000490 Leuconostoc lactis str. WiKin40 "Leuconostoc lactis strain WiKin40 is a Gram-positive, nonsporulating coccus that thrives in various anaerobic and microaerophilic environments, particularly within fermented foods and dairy products. This strain is commonly found in habitats such as cheese, kimchi, and wine, where it plays a significant role in the fermentation process. As a facultative anaerobe, L. lactis WiKin40 can metabolize in both the presence and absence of oxygen, allowing it to adapt to diverse ecological niches, including milk, whey, vegetables, and meat.↵↵The presence of L. lactis in fermented foods underscores its importance in the production of flavor compounds and its potential contribution to the preservation of food products through acidification. The metabolic activities of this strain not only enhance the sensory characteristics of various foods but may also contribute to the health benefits associated with consuming fermented products, such as improved gut microbiota composition.↵↵In summary, Leuconostoc lactis strain WiKin40 exemplifies the versatility of lactic acid bacteria in food fermentation and highlights the intricate relationships between microbial inhabitants and their food environments, indicating a vital role in both food science and microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc lactis Positive Coccus Facultative anaerobe cheese; dairy; dairy products; fermented foods; food products; kimchi; meat; milk; Milk; vegetables; whey; wine Nonsporulating 1246 NZ_CP016599.1 Bac0000491 Weissella paramesenteroides str. WpK4 "Weissella paramesenteroides str. WpK4 is a Gram-positive coccus that typically exhibits a unique arrangement in pairs or chains. This bacterium has been isolated from dry naturally fermented Greek sausage, indicating its adaptation to specific environments associated with traditional fermentation processes. As a facultative anaerobe, W. paramesenteroides str. WpK4 can thrive in both aerobic and anaerobic conditions, which is advantageous for its survival and metabolic flexibility in diverse microenvironments within the fermented sausage matrix.↵↵The presence of this microbe in the fermentation of Greek sausage suggests that it may play a role in the development of flavor and preservation of the product, contributing to the characteristic qualities of this traditional food. Additionally, its ability to grow in varying oxygen levels may enhance its potential interactions with other microbial species present during fermentation, possibly influencing the overall microbial community dynamics and the resultant biochemical processes involved in sausage maturation. Understanding the specific functions and interactions of W. paramesenteroides str. WpK4 can provide insights into the complexities of fermentation and the importance of specific strains in traditional food production." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella paramesenteroides Positive Coccus Facultative anaerobe dry naturally fermented Greek sausage Chains; Pairs 1249 NZ_CM014771.1 Bac0000492 Pediococcus acidilactici str. BCC1 "Pediococcus acidilactici strain BCC1 is a Gram-positive, nonsporulating coccus that thrives under anaerobic conditions, maximizing its growth at an optimal temperature of 30.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, which allows it to exploit a variety of habitats.↵↵Pediococcus acidilactici is known for its role in fermentation processes, particularly in the production of lactic acid, and it can be found in diverse environments, including fermented foods and plant materials. Its anaerobic nature suggests that it plays a crucial role in anaerobic fermentation, contributing to the preservation and flavor profile of various fermented products. ↵↵The ability to thrive in multiple habitats indicates its ecological versatility, which may facilitate its use in biotechnological applications, such as food production and probiotic formulations. Understanding the specific conditions that favor the growth of Pediococcus acidilactici str. BCC1 can provide insights into its metabolic capabilities and potential functional roles in microbial communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 NZ_CP018763.1 Bac0000493 Pediococcus acidilactici str. SRCM 103289 "Pediococcus acidilactici strain SRCM 103289 is a Gram-positive, nonsporulating coccus that thrives under anaerobic conditions and demonstrates chemoheterotrophic metabolism. This strain exhibits optimal growth at a temperature of 30.0°C, indicating a preference for moderate thermal environments. As a member of the genus Pediococcus, it is typically found in a variety of habitats, reflecting its adaptability to diverse ecological niches. ↵↵The anaerobic nature of P. acidilactici suggests its role in fermentation processes, potentially contributing to the production of lactic acid in various substrates. This metabolic pathway aligns with its classification as a chemoheterotroph, relying on organic compounds for energy and carbon. Given its nonsporulating characteristic, this strain may be particularly sensitive to environmental stresses that typically trigger sporulation in other microbial species, thus influencing its survival and ecological interactions.↵↵The versatility of P. acidilactici strain SRCM 103289 in multiple habitats may enhance its utility in food fermentation processes, where maintaining anaerobic conditions is crucial for optimal product development. This adaptability underscores the significance of such microbes in both traditional fermentation practices and modern applications, such as probiotics and food preservation, where their metabolic byproducts can benefit human health and food quality." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 SBJJ00000000.1 Bac0000494 Pediococcus acidilactici str. SRCM103367 "Pediococcus acidilactici strain SRCM103367 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 30.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, making it well-suited to a variety of habitats where such substrates are available. Importantly, P. acidilactici str. SRCM103367 is classified as an anaerobe, indicating that it metabolizes in the absence of oxygen, which may influence its distribution and ecological interactions in oxygen-limited environments.↵↵Pediococcus species, including strain SRCM103367, are often associated with fermentation processes, particularly in the production of various food products. The ability of this strain to inhabit multiple environments suggests it may play diverse roles in different ecological niches, potentially contributing to the fermentation of plant materials or dairy products. Given its anaerobic metabolism and chemoheterotrophic nature, P. acidilactici str. SRCM103367 might be particularly effective in anaerobic fermentation systems, such as those found in the gastrointestinal tracts of animals or in anaerobic digesters. This adaptability enhances its ecological significance and underscores its potential utility in biotechnological applications related to food fermentation and waste management." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 NZ_CP035151.1 Bac0000495 Pediococcus acidilactici str. SRCM100320 "Pediococcus acidilactici strain SRCM100320 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolism and thrives optimally at 30.0°C. This strain is classified as an anaerobe, indicating that it grows in environments devoid of oxygen. Pediococcus acidilactici, as a member of the Lactobacillaceae family, is known to occupy diverse habitats, which may include fermented foods and certain ecological niches within the gastrointestinal tracts of animals.↵↵The capacity of P. acidilactici str. SRCM100320 to function as a chemoheterotroph allows it to utilize organic compounds for energy and growth, making it adaptable to various environments where organic substrates are available. Its anaerobic requirement further underscores its ecological role in fermentative processes, particularly in environments where oxygen is limited.↵↵Understanding the metabolic capabilities and growth conditions of Pediococcus acidilactici str. SRCM100320 may provide insights into its potential applications in food fermentation and preservation, as well as its role in microbial ecosystems. The strain's adaptability to multiple habitats suggests that it could play a significant role in nutrient cycling and the maintenance of microbial diversity in anaerobic environments, highlighting its importance in both industrial and ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 LYUJ00000000.1 Bac0000496 Pediococcus acidilactici str. SRCM103387 "Pediococcus acidilactici str. SRCM103387 is a nonsporulating, Gram-positive coccus that thrives as an anaerobe, utilizing a chemoheterotrophic metabolism for energy. This strain exhibits optimal growth at 30.0°C and is found in a variety of habitats, reflecting its adaptability to different environmental conditions. ↵↵As a member of the Pediococcus genus, this microorganism is known for its role in fermentation processes, particularly in the production of lactic acid. Its ability to thrive in anaerobic environments underscores its potential applications in food science and biotechnology, where anaerobic fermentative processes are often employed. ↵↵The strain's capacity to inhabit multiple habitats suggests a versatile ecological niche, allowing it to play a significant role in various fermentation ecosystems. This adaptability may also be indicative of its potential for use in probiotic formulations, where it could contribute beneficial effects to gut microbiota. Further research could elucidate specific interactions within these habitats, enhancing our understanding of its ecological contributions and potential industrial applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 NZ_CP035154.1 Bac0000497 Pediococcus pentosaceus "Pediococcus pentosaceus is a gram-positive, spherical bacterium (cocci) that typically forms pairs or tetrads, thriving at mesophilic temperatures (optimal around 30-37°C). This organism is a chemoheterotroph, obtaining its energy and carbon from organic compounds, and is classified as a facultative anaerobe, able to grow in both aerobic and anaerobic conditions. As a gram-positive bacterium, Pediococcus pentosaceus retains the crystal violet stain used in the Gram staining procedure, resulting in a characteristic purple hue. Its coccoid shape and tendency to form clusters contribute to its distinctive morphology, which can be observed under the microscope. The mesophilic nature of this microbe makes it particularly suited for fermentation processes that occur at moderate temperatures, such as those in the food industry. As a chemoheterotroph, Pediococcus pentosaceus primarily relies on various carbohydrates for energy, demonstrating its versatility in utilizing different organic substrates. Its facultative anaerobic capability allows it to grow in the presence or absence of oxygen, making it a highly adaptable organism in different environments, especially in fermented food systems. This bacterium is predominantly found in plant materials, fermented foods, and the gastrointestinal tracts of animals, indicating its role in both natural ecosystems and human food production. It is commonly used as a starter culture in the fermentation of vegetables, meats, and dairy products, contributing to the production of foods like pickles and sausages. Beyond its culinary applications, Pediococcus pentosaceus is noted for its ability to produce bacteriocins, which are antimicrobial peptides that can inhibit the growth of pathogenic bacteria, thus enhancing food safety and preservation. This property not only adds value to the fermentation process but also supports the concept of using natural preservatives in food products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Tetrads 1255 JQBF00000000.1 Bac0000498 Finegoldia magna "Finegoldia magna is a species of bacteria that thrives in a variety of environments, exhibiting unique characteristics that set it apart from other microbes. As a mesophilic organism, Finegoldia magna prefers temperatures between 25°C and 37°C, making it adapted to survive in warm environments. It is a heterotroph, meaning it obtains its energy by breaking down organic compounds, and produces energy through fermentation, a process that utilizes the anaerobic breakdown of glucose to produce ATP. Finegoldia magna is a Gram-positive bacterium, characterized by a thick peptidoglycan layer in its cell wall. It has a spherical shape, typically ranging from 0.5 to 1.5 μm in diameter. This microbe is found in all body sites, including skin, mucous membranes, and the gastrointestinal tract, in various species of animals, including humans. With regards to oxygen preference, Finegoldia magna is an anaerobe, meaning it cannot survive in the presence of oxygen. In fact, it requires a low or no-oxygen environment to grow and thrive. This adaptation allows it to inhabit regions of the body where oxygen levels are typically low, such as the oral cavity and gut. Finegoldia magna has been associated with several human diseases, including dental caries, periodontitis, and respiratory tract infections. Its ability to form biofilms on surfaces, as well as its antimicrobial resistance, contributes to its pathogenic potential. Furthermore, its ability to produce extracellular enzymes and toxins enables it to adapt to different environments and evade host defenses." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 1260 NDYI00000000.1 Bac0000499 Peptostreptococcus anaerobius str. MJR8628A "Peptostreptococcus anaerobius str. MJR8628A is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a chemoheterotrophic organism, it derives its energy from organic compounds, reflecting its adaptation to diverse habitats where organic matter is available. ↵↵This microbe is part of a broader group of anaerobic bacteria that play significant roles in various ecosystems, particularly in environments rich in organic material, such as the human gastrointestinal tract and other anoxic niches. The ability to grow in multiple habitats suggests that P. anaerobius str. MJR8628A may contribute to the complex microbial communities found in these environments, potentially influencing nutrient cycling and the overall health of its microhabitats. ↵↵Understanding the ecological roles of such anaerobic bacteria is crucial, as they can be integral to processes such as fermentation and the degradation of organic substances. This strain's characteristics underline the importance of anaerobes in maintaining ecological balance in both natural and human-associated environments." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus anaerobius Positive Cocci No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1261 LSQZ00000000.1 Bac0000500 Hominimerdicola alba "Hominimerdicola alba is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, specifically associated with host organisms. This bacterium's coccoid shape and anaerobic metabolism suggest an adaptation to environments where oxygen is limited, such as within the gastrointestinal tracts of mammals or other host-associated niches. ↵↵As a nonsporulating organism, H. alba may rely on direct host interactions for survival and proliferation, indicating a specialized relationship with its host. The ability to thrive in anaerobic conditions is typical for many commensal and symbiotic bacteria that inhabit host-associated environments, where oxygen levels are often low. ↵↵Further research may elucidate the specific roles that H. alba plays within its host ecosystem, potentially shedding light on its contributions to host metabolism or immune modulation. Understanding the functional interactions of H. alba may offer insights into the broader microbial dynamics at play in host-associated microbiomes." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Hominimerdicola Hominimerdicola alba Positive Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1264 FOKQ00000000.1 Bac0000501 Ruminococcus sp. YRD2003 "Ruminococcus sp. YRD2003 is a Gram-positive, nonsporulating coccus that thrives in anaerobic conditions and is primarily found in the intestinal microflora of animals. This bacterium demonstrates a chemoheterotrophic metabolism, utilizing organic compounds as both carbon and energy sources, which is typical of many gut microbiota involved in the fermentation of dietary fibers and other substrates.↵↵Optimal growth for Ruminococcus sp. YRD2003 occurs at approximately 39.0°C, suggesting a preference for the warm environment typical of the animal intestines. The presence of this microbe in the gut highlights its potential role in the digestion process, particularly in the breakdown of complex carbohydrates, thereby contributing to the overall health and functionality of the host's digestive system.↵↵The ecological significance of Ruminococcus sp. YRD2003 lies in its potential contributions to the maintenance of gut homeostasis and its interactions with other microbial populations within the intestinal ecosystem. Understanding its specific functions and interactions could provide insights into the broader dynamics of gut microbiota and their implications for host health and nutrition." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. YRD2003 Positive Cocci No 1 Anaerobe 39 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1265 FNZT00000000.1 Bac0000502 Ruminococcus sp. XPD3002 "Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms.↵↵As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. ↵↵The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. XPD3002 Positive Cocci No 1 Anaerobe 39 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1265 FPJT00000000.1 Bac0000503 Sarcina ventriculi "Sarcina ventriculi is a Gram-positive, coccoid bacterium that typically arranges itself in pairs and exhibits the ability to form spores. As a chemoheterotroph, S. ventriculi derives its energy from organic compounds, enabling it to thrive in various anaerobic environments. This microbe is often found in diverse habitats, particularly within the gastrointestinal tracts of various organisms, where it plays a role in the microbial community dynamics.↵↵The anaerobic nature of S. ventriculi suggests an adaptation to environments where oxygen is limited or absent, allowing it to exploit niches that may be inhospitable to aerobic microorganisms. Its sporulation capability indicates a resilience to adverse conditions, enabling it to survive periods of nutrient scarcity or other environmental stresses. The presence of this bacterium in multiple habitats underscores its ecological versatility and potential contributions to nutrient cycling within those ecosystems.↵↵Understanding the specific roles and interactions of S. ventriculi in its native habitats could provide insights into the broader implications of anaerobic microbial processes, particularly in relation to digestion and fermentation in host organisms. This highlights the importance of such microbes in maintaining the balance of microbial ecosystems and their potential influence on host health and nutrient availability." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Sarcina Sarcina ventriculi Positive Cocci No 1 Anaerobic Chemoheterotroph Multiple Pairs Sporulating Human 1267 CYZR00000000.1 Bac0000504 Micrococcus luteus str. AH-P "Micrococcus luteus strain AH-P is a Gram-positive coccus that typically arranges itself in tetrads. This microbe is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes. M. luteus is known to inhabit various environments, reflecting its adaptability and potential for survival in diverse habitats. ↵↵The tetrad arrangement is characteristic of this species and may influence its ecological interactions, potentially affecting its ability to colonize surfaces and form biofilms. The presence of multiple habitats suggests that M. luteus str. AH-P could play a role in nutrient cycling and microbial community dynamics in its environments. ↵↵Overall, the ability of Micrococcus luteus str. AH-P to thrive in aerobic conditions and its characteristic cellular morphology contribute to its ecological roles, highlighting the importance of understanding such traits in assessing the microbial diversity and functionality of different ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 SWLA00000000.1 Bac0000505 Micrococcus luteus str. S1 "Micrococcus luteus strain S1 is a Gram-positive coccus characterized by its arrangement in tetrads and its aerobic metabolic requirements. This organism is part of the diverse Micrococcus genus, which is known for its resilience and ability to inhabit multiple environments. As a strictly aerobic microbe, M. luteus str. S1 relies on oxygen for its growth and energy production, a trait that contributes to its adaptability in various habitats.↵↵The coccoid shape and characteristic tetrad arrangement of M. luteus str. S1 allow it to form distinctive clusters, which can be observed under a microscope. Such structural traits may play a role in its survival strategies, including the potential for enhanced nutrient acquisition or resistance to environmental stresses.↵↵Micrococcus luteus, including strain S1, is often found in soil, dust, and on human skin, indicating a versatile lifestyle that spans both terrestrial and human-associated ecosystems. Its presence in these varied habitats suggests it may engage in complex interactions with other microbial communities and possibly contribute to biogeochemical cycles. Understanding the ecological role of M. luteus str. S1 can provide insights into its potential functions in environmental microbiology and its contributions to maintaining microbial diversity in its habitats." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 SWFK00000000.1 Bac0000506 Micrococcus luteus "Micrococcus luteus is a Gram-positive, coccoid-shaped microbe that thrives in temperatures ranging from mesophilic to thermophilic, categorizing it under the temperature preference category of ""thermophilic"" (above 38°C). As a chemoheterotroph, M. luteus obtains its energy by breaking down organic compounds, utilizing organic molecules as its energy source. This microbe produces energy through aerobic respiration, utilizing oxygen in the process. Gram staining reveals that M. luteus has a positive reaction, indicating the presence of a thick peptidoglycan layer in its cell wall. The cocci shape of this microbe is typically found in clusters or chains, giving it a distinctive appearance. As a ubiquitous microbe, M. luteus can be found on various body sites, including skin, mucous membranes, and surfaces, in all possible species. M. luteus is an obligate aerobe, requiring oxygen for optimal growth and survival. This microbe is also capable of tolerating low oxygen levels, making it a facultative anaerobe. In this sense, it can adapt to different environmental conditions, thriving in a range of oxygen concentrations. This adaptability allows M. luteus to colonize diverse environments, from skin to soil. Notably, Micrococcus luteus is considered a human pathogen, responsible for various infections, including skin lesions, wound infections, and respiratory diseases. However, it is also known to be a harmless commensal, often part of the normal flora on human skin. In addition, M. luteus has been studied for its potential applications in biotechnology, such as in the production of antibiotics and other bioactive compounds." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 UGPO00000000.1 Bac0000507 Micrococcus luteus str. SB1254 "Micrococcus luteus strain SB1254 is a Gram-positive, aerobic bacterium characterized by its cocci shape and distinct tetrad arrangement. This strain, like other members of the Micrococcus genus, thrives in diverse habitats, indicating its adaptability to various environmental conditions. The ability to grow in multiple environments suggests a versatile metabolic capacity, allowing Micrococcus luteus SB1254 to utilize different nutrient sources and potentially play a role in various biogeochemical cycles. ↵↵As an aerobe, this strain requires oxygen for its growth and metabolic processes, which may influence its ecological niche, particularly in oxygen-rich environments. The tetrad arrangement is a notable morphological feature, which may enhance its survival and colonization abilities in competitive microbial communities. The combination of its Gram-positive cell wall structure and aerobic metabolism positions Micrococcus luteus SB1254 as a significant player in microbial ecology, particularly in environments where oxygen levels fluctuate. ↵↵Overall, the presence of Micrococcus luteus SB1254 in diverse habitats underscores its ecological importance and potential utility in biotechnological applications, such as bioremediation or industrial fermentation processes, where its metabolic versatility may be harnessed." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 NZ_CP026366.1 Bac0000508 Dermacoccus nishinomiyaensis str. TSA37 "Dermacoccus nishinomiyaensis str. TSA37 is a Gram-positive, aerobic coccus that exhibits a characteristic spherical shape. This microbe is part of the larger genus Dermacoccus, which is known for its potential utility in various biotechnological applications owing to its unique metabolic capabilities. As an aerobic organism, D. nishinomiyaensis str. TSA37 requires oxygen for growth, which suggests that it may play a role in environments where oxygen is abundant.↵↵The Gram-positive nature of this strain indicates the presence of a thick peptidoglycan layer in its cell wall, a feature commonly associated with increased resistance to certain environmental stresses and influence on its interaction with other microorganisms. While specific ecological niches for D. nishinomiyaensis str. TSA37 are not detailed, the adaptability of aerobic cocci in diverse habitats suggests that this organism may thrive in environments rich in organic matter or other substrates conducive to aerobic metabolism.↵↵Understanding the traits of Dermacoccus nishinomiyaensis str. TSA37 could provide insights into the ecological roles of aerobic cocci in microbial communities, particularly in relation to nutrient cycling and the degradation of organic materials. Further research into its physiological characteristics may elucidate its potential applications in bioremediation or industrial biotechnology." Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Dermacoccus Dermacoccus nishinomiyaensis Positive Cocci Aerobe 1274 SUPQ00000000.1 Bac0000509 Dermacoccus nishinomiyaensis str. M25 "Dermacoccus nishinomiyaensis strain M25 is a Gram-positive, aerobic coccus that exhibits notable resilience in its environmental niche. This microorganism is characterized by its spherical shape, which is typical of many members of the genus Dermacoccus. As an aerobic organism, D. nishinomiyaensis strain M25 necessitates oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. ↵↵The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, which is a common feature among many cocci and contributes to its structural integrity. While the specific habitat and ecological roles of D. nishinomiyaensis strain M25 have not been detailed, its classification suggests a potential adaptability to varied environments, possibly including soil or surfaces where organic matter is present. ↵↵The unique combination of traits exhibited by D. nishinomiyaensis strain M25 may indicate a role in the degradation of organic materials or in interactions with other microbial communities, though further research would be necessary to elucidate its precise ecological function. This strain could potentially serve as a model for studying aerobic, Gram-positive cocci in microbiological research, contributing to a better understanding of microbial diversity and functionality in various ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Dermacoccus Dermacoccus nishinomiyaensis Positive Cocci Aerobe 1274 NZ_CP008889.1 Bac0000510 Kocuria rosea "Kocuria rosea is a Gram-positive coccus that typically displays a characteristic arrangement in pairs. This microbe is part of the diverse microbial community found in various environments, including indoor dust and specific natural settings such as the Iranian Ab-e-Siah hot springs. Its presence in dust indicates its potential for widespread distribution in human-inhabited environments, suggesting a possible adaptation to the indoor microbiome.↵↵The habitat of Kocuria rosea extends to extreme environments, as evidenced by its detection in hot springs, which may confer unique metabolic capabilities or stress resistance mechanisms. Additionally, its association with human skin highlights its potential role in the skin microbiota, where it may contribute to the overall microbial balance.↵↵Overall, Kocuria rosea exemplifies the resilience of certain microbial species, enabling them to thrive in both anthropogenic and extreme natural environments. This adaptability underscores the importance of studying such organisms in understanding microbial diversity and their potential roles in different ecological niches." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rosea positive Coccus dust; indoor dust; Iranian Ab-e-Siah hot springs; Iranian hot spring; skin Pairs 1275 SMZT00000000.1 Bac0000511 Staphylococcus argenteus "Staphylococcus argenteus is aGram-positive, facultatively anaerobic coccus that typically exhibits a characteristic arrangement of cells in clusters or singles. This microbe has been identified as host-associated, indicating its presence in association with various hosts. Notably, S. argenteus thrives optimally at a temperature of 3.0 °C, suggesting a potential adaptation to cooler environments, which may play a role in its ecological niche.↵↵The clustering arrangement of S. argenteus allows for efficient colonization and may enhance its survival in diverse environments. As a facultative anaerobe, it possesses the metabolic versatility to utilize both aerobic and anaerobic respiration, which can be advantageous in fluctuating oxygen conditions often found in host-associated habitats.↵↵The understanding of S. argenteus's habitat preferences and physiological traits can provide insights into its ecological role, particularly in cooler climates where it may interact with other microorganisms. The ability to thrive at lower temperatures may also suggest a niche specialization that warrants further exploration, especially in the context of its potential interactions within microbial communities. This adaptability underscores the importance of considering environmental factors when studying the dynamics of host-associated microbes like Staphylococcus argenteus." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus argenteus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 FQSL00000000.1 Bac0000512 Staphylococcus aureus str. GD487 "Staphylococcus aureus str. GD487 is a Gram-positive coccus that typically forms clusters or occurs as singles. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which may facilitate its adaptability within various host-associated habitats. The optimal growth temperature for S. aureus str. GD487 is notably low, at 3.0°C, suggesting that this strain may possess unique metabolic adaptations that enable it to survive and proliferate in cold environments, potentially influencing its ecological niche.↵↵The clustering arrangement of cells is characteristic of the Staphylococcus genus and may play a role in its physiological behavior and interactions within host organisms. Given its facultative nature and the ability to grow at low temperatures, S. aureus str. GD487 may be well-suited to colonize specific ecological niches, such as cold-blooded hosts or environments with lower temperatures, where other strains may not thrive. This adaptability highlights the potential for strain GD487 to contribute to the microbial diversity associated with host organisms in varied climatic conditions. Further studies on this strain could provide insights into its ecological roles and its interactions with host immune responses under different environmental pressures." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_CP040229.2 Bac0000513 Staphylococcus aureus str. LBMM3245 "Staphylococcus aureus str. LBMM3245 is a Gram-positive, cocci-shaped bacterium that typically forms clusters or single cells. This strain is facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments. The optimal growth temperature for S. aureus str. LBMM3245 is notably low at 3.0°C, suggesting that it may be well-adapted to cold-host environments or conditions where other microbial competitors are less active.↵↵The habitat of this strain is categorized as host-associated, which implies a close relationship with a host organism, potentially contributing to its survival and proliferation in specific environments. This trait aligns with the broader ecological role of Staphylococcus aureus species, which are commonly found in association with various hosts, including humans and animals.↵↵The unique combination of its low optimal temperature and facultative anaerobic metabolism may allow S. aureus str. LBMM3245 to occupy niche environments that are less favorable for other mesophilic microbes, potentially providing insights into its ecological adaptability and survival strategies. Further studies could elucidate the specific interactions this strain has with its host and its potential role in the microbiome or pathogenic contexts under cold conditions." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 QBKY00000000.1 Bac0000514 Staphylococcus aureus "Staphylococcus aureus is a type of Gram-positive bacteria that thrives in a temperature range of 37°C to 40°C, categorizing it as mesophilic. This microbe is a chemoheterotroph, utilizing organic compounds as its energy source. S. aureus produces energy through the process of fermentation, specifically beta-hydroxybutyrate (BHB) fermentation. When Gram stained, S. aureus exhibits a positive reaction, indicating the presence of a thick peptidoglycan layer in its cell wall. Its shape is spherical, with a diameter ranging from 0.5 to 1.5 μm. S. aureus is commonly found in all body sites, including the skin, nasal passages, and respiratory, gastrointestinal, and genitourinary tracts. It can colonize the human body and may cause infections, particularly in individuals with compromised immune systems. In terms of oxygen preference, S. aureus is an obligate aerobe, requiring the presence of oxygen to carry out metabolic processes. S. aureus plays a significant role in human health and disease. It is a major cause of skin and soft tissue infections, such as cellulitis and abscesses, as well as pneumonia, septicemia, and endocarditis. This microbe is also responsible for the production of toxins, including alpha-toxin, which can cause tissue damage and cell death. Despite its pathogenic potential, S. aureus has also been used therapeutically to produce antibiotics, such as penicillin, and to study the molecular biology of antibiotic resistance. Furthermore, research on S. aureus has led to a better understanding of the human microbiome and the development of diagnostic tools to detect this pathogen." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 MSFF00000000.1 Bac0000515 Staphylococcus pseudintermedius "Staphylococcus pseudintermedius is a gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found on all body sites in various species, including dogs, cats, and humans, and is a facultative anaerobe. As a gram-positive microbe, Staphylococcus pseudintermedius has a thick peptidoglycan layer in its cell wall, which provides resistance to certain environmental stresses. Its cocci shape allows it to adhere to surfaces and form biofilms, making it a formidable opponent for the host's immune system. The mesophilic temperature preference of Staphylococcus pseudintermedius enables it to thrive in a wide range of environments, from the skin of mammals to contaminated surfaces. As a chemoheterotroph, this microbe relies on organic compounds for energy and carbon, which it obtains from its host or environment. Staphylococcus pseudintermedius can be found on all body sites, including the skin, mucous membranes, and internal organs, in various species, making it a versatile and opportunistic pathogen. Its ability to thrive in both aerobic and anaerobic conditions, as a facultative anaerobe, allows it to adapt to different environments and survive in a variety of niches. Staphylococcus pseudintermedius has been implicated in various diseases, including skin infections, otitis externa, and urinary tract infections, and its ability to develop resistance to antibiotics makes it a significant concern in veterinary and human medicine. This microbe has also been shown to produce various virulence factors, including toxins and enzymes, which enable it to evade the host's immune system and cause disease, and recent studies have revealed that Staphylococcus pseudintermedius can also form symbiotic relationships with its host, highlighting the complex and multifaceted nature of this microbe." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_LR134267.1 Bac0000516 Staphylococcus agnetis "Staphylococcus agnetis is a Gram-positive coccus that typically forms clusters or singles, distinguishing it from other members of the Staphylococcus genus. This bacterium is associated with host environments, indicating its role as a commensal or symbiotic organism within its biological niche. S. agnetis demonstrates facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic conditions, which may contribute to its adaptability in diverse environments within host organisms. ↵↵The optimal growth temperature for S. agnetis is notably low at 3.0°C, suggesting that this microbe may be well-suited to specific ecological niches that experience cooler temperatures, potentially influencing its distribution and ecological interactions. Understanding the physiological traits and habitat preferences of S. agnetis provides insight into its potential roles within host-associated communities and its possible contributions to microbial diversity in cooler environments. Further investigation into its interactions with host organisms could reveal important insights into its ecological significance and functional roles within microbial communities." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus agnetis Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 UHAH00000000.1 Bac0000517 Staphylococcus aureus str. PSS7673 "Staphylococcus aureus strain PSS7673 is a Gram-positive coccus that typically occurs in clusters or as singles, characterizing its distinctive morphology. This bacterium is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which is advantageous for survival in diverse host-associated habitats. Optimal growth occurs at a temperature of 3.0°C, indicating an ability to thrive in cooler conditions, which may be relevant for its ecological niche.↵↵As a member of the Staphylococcus genus, S. aureus PSS7673 shares common traits with other staphylococci, including its versatile metabolic capabilities that enable it to utilize various substrates for energy. The host-associated habitat suggests a potential relationship with its host, which could range from commensalism to pathogenicity, depending on the context of its interaction.↵↵Understanding the ecological role of S. aureus PSS7673, particularly its adaptation to cooler temperatures, may provide insights into its survival strategies in specific environments, such as those encountered in colder climates or during food storage. Furthermore, the facultative nature of this strain hints at its resilience and adaptability, which are critical for its persistence in host-associated environments where oxygen availability may fluctuate." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 LRQH00000000.1 Bac0000518 Staphylococcus carnosus "Staphylococcus carnosus is a Gram-positive, coccus-shaped bacterium that thrives in environments with temperatures ranging from mesophilic to thermophilic, having a preference for temperatures between 25-45°C, categorizing it as a category 2 (mesophilic-thermophilic) temperature organism. This bacterium is a heterotroph, meaning it obtains its energy by breaking down complex organic molecules, specifically using a combination of fermentation and respiration to produce energy. As a facultative anaerobe, S. carnosus can tolerate the presence of oxygen, growing optimally in aerobic conditions, but can also survive in the absence of oxygen. This adaptability allows the microbe to inhabit various environments, from skin and mucous membranes to internal organs and wounds. Upon Gram staining, S. carnosus exhibits a positive reaction, indicating the presence of a thick peptidoglycan layer in its cell wall. The bacterium's coccus shape is typically arranged in clusters or grape-like formations, often observed in chains or scattered individuals. S. carnosus can be found inhabiting various body sites, including skin, mucous membranes, and respiratory, gastrointestinal, and genitourinary tracts. Its ability to adapt to different environments allows it to colonize a wide range of host niches. This microbe plays a crucial role in the development of skin and mucous membranes, and is also associated with various diseases, including skin infections, septicemia, and endocarditis. Research has also shown that S. carnosus is used as a model organism in biotechnological applications, such as the production of enzymes, antioxidants, and biosurfactants. Studies have also explored its potential as a probiotic, demonstrating its ability to modulate the host immune system and improve gut health. Staphylococcus carnosus has also been found to possess a remarkable ability to form biofilms, complex communities of microorganisms attached to surfaces, which provide protection against environmental stressors and host immune responses. This capacity has implications for the development of novel antimicrobial therapies and infection prevention strategies." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus carnosus Positive Cocci No 1 1 Facultative anaerobe Mesophilic fermented raw sausages; Harbin dry sausages; raw sausage Free living Clusters - Singles Non-pathogenic 1281 UHCY00000000.1 Bac0000519 Staphylococcus epidermidis "Staphylococcus epidermidis is a Gram-positive, mesophilic bacterium that thrives in a wide range of environments. It is a heterotroph, meaning it obtains its energy by breaking down organic compounds, and its metabolism is limited to chemo-heterotrophy. Energy production occurs through the process of respiration, utilizing oxygen as its final electron acceptor. The shape of S. epidermidis is characteristic of its family, Staphylococci, being a spherical or oval-shaped coccus with a diameter of 0.5-1.5 μm. It is a facultative anaerobe, meaning it can grow and survive in the presence or absence of oxygen. In fact, it exhibits a unique ability to switch between aerobic and anaerobic metabolism, allowing it to adapt to different environments. Staphylococcus epidermidis is a normal inhabitant of the human skin and mucous membranes, appearing on all body sites, including the skin, nose, mouth, and gastrointestinal tract. Its ability to colonize various surfaces and adhere to host cells makes it a significant opportunistic pathogen. When stained with Gram's stain, S. epidermidis exhibits a characteristic Gram-positive reaction, indicating the presence of a thick peptidoglycan layer in its cell wall. Its growth temperature range is typically between 20-40°C, falling within the mesophilic category. This microbe has gained significant attention due to its involvement in various infections, including catheter-associated infections, prosthetic joint infections, and septicemia, particularly in compromised individuals. Moreover, its ability to form biofilms on implanted devices and medical equipment makes it a significant challenge in medical settings. Despite its potential pathogenic nature, S. epidermidis has also been found to play a role in the human microbiome, contributing to the balance of the skin's natural flora and influencing the immune system." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 1282 NZ_CP040865.1 Bac0000520 Staphylococcus epidermidis str. 14-1779 M5 "Staphylococcus epidermidis str. 14-1779 M5 is a Gram-positive cocci bacterium characterized by its arrangement in clusters or singles. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments. It is commonly associated with host environments, suggesting a potential role in the microbiota of various organisms.↵↵The cluster formation of S. epidermidis is a notable trait that may contribute to its ability to form biofilms, which are communities of microorganisms adhering to surfaces. This characteristic is particularly significant in medical contexts, where S. epidermidis is recognized for its association with indwelling medical devices. The facultative anaerobic nature of this strain indicates that it can adapt to varying oxygen levels, which enhances its survival and colonization potential in host-associated habitats.↵↵Given its specific growth temperature and habitat, S. epidermidis str. 14-1779 M5 may play an important role in maintaining the balance of microbial communities within the host environment, potentially influencing host health through competition with pathogenic organisms. The adaptability of this strain to different oxygen conditions underscores its ecological versatility, making it a relevant subject of study in understanding microbial dynamics in host-associated ecosystems." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 1282 VDEO00000000.1 Bac0000521 Staphylococcus haemolyticus "Staphylococcus haemolyticus is a Gram-positive, spherical-shaped bacterium that thrives in temperatures ranging from 25°C to 40°C, falling under the category of mesophilic organisms. Metabolically, it is a heterotroph, utilizing organic compounds as its source of energy and carbon. Staphylococcus haemolyticus is capable of producing energy through cellular respiration, specifically through the process of oxidative phosphorylation. Upon microscopic examination, Staphylococcus haemolyticus reveals its Gram-positive nature, characteristic of a thick peptidoglycan layer on its cell wall. Its spherical shape, or coccus, allows it to aggregate into clusters, a common feature among staphylococcal species. This microbe can be found on all body sites, colonizing the skin, mucous membranes, and internal organs. Staphylococcus haemolyticus is an obligate aerobe, requiring the presence of oxygen for optimal growth and metabolism. Its ability to tolerate the presence of oxygen, although requiring it, is evident in its ability to grow in a variety of environments, from skin to internal organs. Staphylococcus haemolyticus plays a crucial role in the human microbiome, serving as a potential pathogen in compromised individuals. Its ability to produce beta-lactamases, enzymes that break down antibiotics, has led to concerns regarding antibiotic resistance. Furthermore, its ability to colonize medical devices and implants has sparked attention in the field of infection control." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1283 PZIE00000000.1 Bac0000522 Staphylococcus hyicus "Staphylococcus hyicus is a coccoid-shaped bacterium belonging to the Staphylococcaceae family. This microbe is characterized by its spherical morphology, which is typical of many staphylococci. While specific pathogenicity traits are not detailed in the provided information, species within the Staphylococcus genus are often noted for their ability to form clusters resembling grape-like arrangements, a feature that may also be applicable to S. hyicus.↵↵As a member of the Staphylococcus genus, S. hyicus is likely to exhibit typical staphylococcal characteristics, such as the ability to thrive in diverse environmental conditions, including varying temperatures and salinities. This adaptability may contribute to its presence in various habitats, potentially including skin and mucosal surfaces of animals, where it could play a role in the microbiome.↵↵An interesting aspect of S. hyicus is its potential involvement in the microbial dynamics of its environment. By occupying ecological niches, it may influence the overall microbial community composition, affecting not only its own survival but also that of cohabiting microorganisms. This interaction underscores the significance of S. hyicus in the broader context of microbial ecology, particularly in environments where staphylococci are prevalent. Further studies are warranted to elucidate its specific roles and interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus hyicus Cocci 1284 QXVO00000000.1 Bac0000523 Staphylococcus simulans "Staphylococcus simulans is a Gram-positive, cocci-shaped bacterium that thrives in mesophilic temperatures, is classified as a chemoheterotroph, and exhibits facultative anaerobic behavior. This versatile microbe is commonly found on the skin and mucous membranes of humans and various animals, including mammals and birds. Its ability to inhabit multiple body sites makes it a noteworthy member of the Staphylococcus genus. As a Gram-positive organism, Staphylococcus simulans retains the crystal violet stain used in the Gram staining procedure, appearing blue to purple under the microscope. Its spherical shape enables it to form clusters that resemble grapelike structures, characteristic of the Staphylococcus family. The mesophilic temperature preference supports its survival in a range of environments, particularly within the human body, where it thrives best at temperatures around 37°C (98.6°F). Being a chemoheterotroph, Staphylococcus simulans relies on organic compounds for energy and growth, utilizing nutrients derived from the host or its environment. As a facultative anaerobe, it can grow in both the presence and absence of oxygen, allowing it to adapt to various niches and conditions. This adaptability contributes to its role as a skin commensal, where it competes for resources with pathogenic bacteria. Additionally, Staphylococcus simulans is known for its antibiotic resistance capabilities, particularly against beta-lactam antibiotics. This resistance is a growing concern in clinical settings, as it can lead to infections that are difficult to treat. Its presence in the human microbiome illustrates the complex interplay between commensal and pathogenic organisms, emphasizing the need for ongoing research in microbiology and infectious diseases." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus simulans Cocci aerobic 1284 NZ_LR134264.1 Bac0000524 Staphylococcus xylosus "Staphylococcus xylosus is a Gram-positive cocci bacterium that exhibits a cluster arrangement reminiscent of grapes. This versatile microbe thrives optimally at mesophilic temperatures, typically between 30°C and 37°C. As a chemoheterotroph, it derives energy from organic compounds and is classified as a facultative anaerobe, allowing it to survive in both oxygen-rich and low-oxygen environments. S. xylosus is commonly found on the skin and mucous membranes of various mammals, including humans, where it contributes to the skin microbiome. It can also be isolated from food products, particularly fermented meats and dairy products, due to its ability to tolerate high salt concentrations. This adaptability to different body sites and environmental conditions demonstrates its ecological significance and resilience. The bacterium is known for its role in the food industry, particularly in the production of fermented sausages and certain cheeses, where it contributes to flavor development and helps inhibit the growth of spoilage organisms and pathogens through acid production and antimicrobial compounds. Additionally, it has been studied for its potential probiotic properties and its ability to enhance the immune response. S. xylosus is also notable for its biofilm-forming ability, which can complicate issues related to medical implants and prosthetic devices. Understanding its pathogenic potential and interactions within microbial communities is crucial for both food safety and clinical implications, making it an important subject of study in microbiology and food science." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus xylosus Positive Cocci No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1288 PZER00000000.1 Bac0000525 Staphylococcus gallinarum Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus gallinarum beetle gut 1293 QXSC00000000.1 Bac0000526 Streptococcus oralis str. SC15-3744 "Streptococcus oralis str. SC15-3744 is a Gram-positive coccus that typically forms pairs and chains, indicative of its characteristic cellular arrangement. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is advantageous for survival in diverse host-associated habitats. ↵↵As a member of the Streptococcus genus, S. oralis str. SC15-3744 likely participates in various microbial communities within its host, contributing to the complex interactions that occur in the oral cavity and other associated tissues. The ability to adapt to fluctuating oxygen levels suggests a versatile metabolic capability, enabling it to engage in various biochemical pathways depending on the environmental conditions.↵↵The ecological role of S. oralis str. SC15-3744 may extend beyond mere commensalism, potentially influencing the host's microbial balance and contributing to oral health. Understanding the specific traits of this strain can provide insights into its functional role within the microbiome, particularly in maintaining homeostasis in host-associated environments. Further research may elucidate its interactions with other microbial species and its overall impact on host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 MBDM00000000.1 Bac0000527 Streptococcus oralis "Streptococcus oralis is a microbe that thrives in a temperature range of 25-40°C, classified as a mesophile. This Gram-positive, rod-shaped bacterium is a heterotroph, meaning it derives its energy by breaking down organic compounds. Specifically, it employs anaerobic fermentation as its primary energy production method, utilizing glucose and other simple sugars as its energy source. Upon examination, S. oralis exhibits a typical coccus (spherical) morphology, with flat, smooth surfaces and a diameter of approximately 0.5-1.2 μm. It is widely distributed across various body sites, including the oral cavity, pharynx, and gastrointestinal tract, with a presence in all human species. In terms of its oxygen preference, S. oralis is an aerotolerant anaerobe, meaning it can grow in the presence of oxygen but does not require it for survival. This adaptability allows it to thrive in environments with varying oxygen levels. Streptococcus oralis is an opportunistic pathogen, often implicated in infections of the oral and respiratory tracts. It is also a key inhabitant of the human oral microbiome, playing a crucial role in maintaining oral health by regulating the colonization of other microorganisms. Notably, S. oralis has been linked to various oral diseases, including dental caries, periodontitis, and endocarditis. Its ability to adhere to tooth surfaces and produce enzymes that break down complex carbohydrates makes it a significant contributor to these conditions. Furthermore, its presence has been associated with conditions such as halitosis, or bad breath, and can serve as a biomarker for the early detection of oral cancer." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 RJNM00000000.1 Bac0000528 Streptococcus oralis str. SK143 "Streptococcus oralis str. SK143 is a Gram-positive, cocci-shaped bacterium that commonly exists in pairs or chains and is classified as a facultative anaerobe. This microbe is primarily host-associated, indicating its presence in association with a host organism, which suggests potential roles in the microbiota of the oral cavity or other mucosal surfaces. ↵↵As a facultative anaerobe, S. oralis str. SK143 has the ability to thrive in both aerobic and anaerobic environments, enhancing its adaptability to various physiological conditions within its host. This adaptability may facilitate its survival and proliferation in diverse niches, contributing to its ecological significance in the human microbiome.↵↵The presence of S. oralis str. SK143 in the host-associated environments underscores its potential involvement in the complex interactions within microbial communities, particularly in the oral cavity where it may participate in oral health or disease processes. Its arrangement in pairs and chains might also suggest cooperative behaviors among cells, which could influence biofilm formation and interspecies interactions in the oral microbiome. Further studies may illuminate its specific roles and contributions to host health or disease states, highlighting the intricate balance of microbial ecosystems within host environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 JPGB00000000.1 Bac0000529 Streptococcus salivarius str. HS0302 "Streptococcus salivarius strain HS0302 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may contribute to its adaptability in various host-associated environments. ↵↵As a member of the Streptococcus genus, S. salivarius is commonly found in the oral cavity and gastrointestinal tract of humans, suggesting its role in the microbiome and potential interactions with host physiology. Its nonsporulating nature implies that it relies on vegetative growth for survival and reproduction, which is characteristic of many commensal bacteria that inhabit dynamic and nutrient-variable environments within the host. ↵↵The facultative anaerobic metabolism of S. salivarius allows it to thrive in diverse conditions, particularly in the oxygen-rich environments of the mouth, where it may contribute to maintaining oral health by competing with pathogenic microorganisms. Additionally, the presence of S. salivarius in the oral microbiome may have implications for its role in oral ecology and its potential influence on the development of dental caries and other oral diseases. Overall, S. salivarius strain HS0302 exemplifies the complex interplay of microbial communities within host-associated habitats, highlighting the significance of commensal organisms in health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 NSIW00000000.1 Bac0000530 Streptococcus salivarius str. NU10 "Streptococcus salivarius str. NU10 is a Gram-positive coccus that typically forms chains and pairs. As a nonsporulating bacterium, it is adapted to a host-associated habitat, indicating its presence in environments closely linked to living organisms. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic conditions, which is advantageous for its survival in diverse ecological niches, such as the oral cavity and gastrointestinal tract of humans.↵↵Streptococcus salivarius is known for its role in oral microbiota, contributing to the maintenance of oral health and potentially influencing the overall microbial community structure. Its characteristics suggest a capability for colonization in the human body, where it may engage in various interactions with other microbial species. The facultative anaerobic nature of this strain highlights its versatility in adapting to fluctuating oxygen levels, which can be critical in various host-associated environments.↵↵This adaptability not only facilitates its survival but may also play a role in its interactions with the host immune system, potentially influencing health outcomes related to oral and systemic health. Further research might elucidate the specific ecological roles and interactions of S. salivarius str. NU10 within the human microbiome, providing insights into its contributions to health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 JJMT00000000.1 Bac0000531 Streptococcus salivarius "Streptococcus salivarius is a Gram-positive, catalase-negative bacterium that thrives in a temperature range of 20-40°C, falling under the ""mesophilic"" category. Its metabolism is characterized as heterotrophic, meaning it obtains its energy by breaking down organic compounds. Specifically, it is a chemoheterotroph, utilizing chemosynthesis to generate energy from the oxidation of nutrients. Streptococcus salivarius is capable of producing energy through fermentation, which involves the breakdown of carbohydrates to produce ATP. This process occurs in the absence of oxygen, making it a facultative anaerobe. Upon staining with Gram's stain, S. salivarius shows a positive reaction, indicating that its cell wall is composed of a thick peptidoglycan layer. Its shape is typical of streptococci, being spherical with a tendency to form chains. Streptococcus salivarius can be found in various body sites, including the oral cavity, respiratory tract, and genitourinary tract, making it a part of the normal flora of the human body. In terms of oxygen preference, S. salivarius is a facultative anaerobe, able to grow in both aerobic and anaerobic environments. However, it appears to prefer a microaerophilic environment, meaning it grows well in the presence of low levels of oxygen. Streptococcus salivarius has been associated with several human health benefits, including the production of bacteriocins that inhibit the growth of pathogenic bacteria. It has also been shown to have immunomodulatory effects, activating the immune system to promote protection against infection. Additionally, studies have demonstrated its potential for use as a probiotic, enhancing oral health and reducing the severity of respiratory infections." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 PKHZ00000000.1 Bac0000532 Streptococcus sanguinis str. 2908 "Streptococcus sanguinis str. 2908 is a Gram-positive, nonsporulating coccus that commonly appears in chains or pairs. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, which is characteristic of its habitat associated with host organisms. S. sanguinis is part of the normal flora found in the human oral cavity, where it plays a role in dental biofilm formation and may influence oral health.↵↵The ability of S. sanguinis to grow in varying oxygen conditions suggests a metabolic versatility that may allow it to adapt to different niches within the host. Its nonsporulating nature indicates that it relies on other survival strategies rather than forming spores, which may be a reflection of its ecological role in maintaining a stable population in the fluctuating environment of the oral cavity.↵↵Understanding the physiological traits of S. sanguinis str. 2908 could provide insights into its interactions within the oral microbiome and its potential impact on dental health, highlighting the importance of microbial balance in the prevention of oral diseases." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 CDMW00000000.1 Bac0000533 Streptococcus sanguinis "Streptococcus sanguinis is a type of Gram-positive, facultative anaerobic bacteria that thrives in a temperature range of 25-37°C, classified as mesophilic. This microorganism is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, and its metabolism is based on the oxidation of glucose and other simple sugars. S. sanguinis produces energy through anaerobic respiration, utilizing the fermentation of sugars to generate ATP. Its Gram-stain positivity is a distinct characteristic, evident due to the thick peptidoglycan layer present in its cell wall. The bacterium's shape is spherical or ovoid, often occurring in chains or pairs. S. sanguinis is an opportunistic pathogen, commonly found on the human body, particularly in the oral cavity, respiratory tract, and on skin surfaces. It can also inhabit the genitourinary tract, gastrointestinal tract, and other sites. Despite being an anaerobe, S. sanguinis is capable of tolerating the presence of oxygen and can even grow in its absence, making it a facultative anaerobe. Oxygen preference is an essential aspect of bacterial metabolism, and S. sanguinis falls under the category of facultative anaerobes, meaning it can grow in both aerobic and anaerobic environments. This adaptability allows the bacterium to occupy niches with varying oxygen levels, further expanding its ability to inhabit different body sites. In addition to its fascinating characteristics, S. sanguinis has also been linked to several diseases, including endocarditis, dental caries, and bacteremia. Its ability to form biofilms, complex communities of microorganisms attached to surfaces, contributes to its pathogenic potential. Despite its potential to cause harm, S. sanguinis remains a vital component of the human microbiome, interacting with host cells and other microbes to maintain ecosystem balance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 RQZI00000000.1 Bac0000534 Streptococcus sp. "Streptococcus sp. is a genus of Gram-positive cocci that are commonly found in various habitats, including the lower respiratory tract, rumen, and sputum. Members of this genus are characterized by their spherical shape and typically occur in chains or pairs. Their presence in the lower respiratory tract suggests a potential role in respiratory microbiota, where they may interact with other microbial communities and host tissues.↵↵The rumen habitat indicates that some species within the Streptococcus genus may contribute to the digestive processes of ruminant animals, potentially assisting in the fermentation of plant materials and influencing overall ruminal health. In sputum, these bacteria can be part of the normal flora or may signify a response to respiratory conditions, highlighting their dual role in health and disease.↵↵While the exact contributions of Streptococcus sp. to host physiology and microbial dynamics are still being explored, their adaptability to diverse environments points to their ecological significance. Furthermore, the interactions between Streptococcus sp. and other microbial inhabitants in these niches may shed light on their potential roles in maintaining homeostasis within the respiratory and digestive systems. Such insights emphasize the importance of understanding microbial communities and their functions in both health and disease contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. positive Cocci lower respiratory tract; rumen; sputum 1306 DNOG00000000.1 Bac0000535 Streptococcus suis str. HN105 "Streptococcus suis str. HN105 is a Gram-positive, coccoid bacterium that typically forms chains, pairs, or exists as single cells. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which may provide a competitive advantage in diverse habitats. The optimal growth temperature for S. suis str. HN105 is 37.0 °C, aligning with the physiological temperature of warm-blooded hosts, suggesting a potential adaptation to specific host interactions.↵↵The specialized habitat of S. suis str. HN105 highlights its niche within particular ecological contexts, potentially relating to its interactions with certain animal species. Given its cellular arrangement and oxygen requirements, this strain may play a role in complex microbial communities where it can thrive in varying oxygen levels. Understanding the traits of S. suis str. HN105 can provide insights into its ecological dynamics and potential roles in its native environment. Further research could uncover its interactions within host microbiomes or its responses to environmental stressors, offering a deeper understanding of its ecological significance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP029399.1 Bac0000536 Streptococcus suis "Streptococcus suis is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in all body sites of various species, including pigs, humans, and other animals, as it is a zoonotic pathogen. As a facultative anaerobe, Streptococcus suis can survive in both aerobic and anaerobic environments, allowing it to adapt to different ecological niches.The Gram-positive characteristic of Streptococcus suis indicates that it has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram staining procedure. Its spherical shape, also known as cocci, enables the microbe to withstand various environmental pressures. As a mesophile, Streptococcus suis grows best in moderate temperatures, typically between 25°C to 40°C, which is consistent with the temperature range of its hosts.As a chemoheterotroph, Streptococcus suis requires organic compounds for energy and carbon sources, which it obtains from its host or environment. This characteristic allows the microbe to thrive in a wide range of body sites, including the respiratory, gastrointestinal, and central nervous systems of various species. The ability of Streptococcus suis to survive in both aerobic and anaerobic conditions, as a facultative anaerobe, enables it to colonize different tissues and cause disease.Streptococcus suis is a significant zoonotic pathogen, and its ability to infect humans who come into contact with infected pigs or contaminated pork products has led to severe diseases, including meningitis and septicemia. The microbe's virulence factors, such as its capsule and suilysin, allow it to evade the host's immune system and cause disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 RSDK00000000.1 Bac0000537 Streptococcus suis str. CZ130302 "Streptococcus suis str. CZ130302 is a Gram-positive coccus that typically exhibits a characteristic arrangement of cells in chains, pairs, and singles. This bacterium thrives optimally at a temperature of 37.0°C, which is consistent with its adaptation to a host-associated environment. As a facultative anaerobe, S. suis str. CZ130302 can survive in both aerobic and anaerobic conditions, suggesting a versatile metabolism that may enhance its survival in various niches within its specialized habitat.↵↵While the specific ecological role of S. suis str. CZ130302 remains to be fully elucidated, its ability to grow in diverse oxygen conditions indicates a potential adaptability to different microenvironments, possibly within host organisms or in close association with swine, a known reservoir for Streptococcus suis. The structural characteristics of this strain may also facilitate interactions with the host immune system, although further investigation is required to determine its specific biological implications. Understanding the ecological dynamics of S. suis str. CZ130302 could provide insights into its role within the microbiome of swine and its interactions with other microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP024974.1 Bac0000538 Streptococcus suis str. NSUI060 "Streptococcus suis str. NSUI060 is a Gram-positive coccus that typically appears in chains, pairs, or as singles. This bacterium thrives optimally at a temperature of 37.0°C, suggesting a preference for warm-blooded hosts. The organism is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may enhance its adaptability to various environments.↵↵Streptococcus suis is known to inhabit specialized niches, although the exact nature of these habitats for strain NSUI060 is not detailed in the current data. The arrangement of cells in chains and pairs may facilitate communication and coordination among bacterial cells, potentially influencing its survival strategies within its ecological context.↵↵This strain's physiological traits suggest a potential role in symbiotic or pathogenic relationships within its habitat, although specific interactions are not described here. Understanding the environmental conditions that favor the growth of S. suis str. NSUI060 may provide insights into its ecological dynamics and potential interactions with host organisms, particularly in relation to temperature and oxygen availability. Further studies could elucidate the ecological implications of its facultative anaerobic metabolism and its adaptation to specialized habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP012912.1 Bac0000539 Streptococcus thermophilus "Streptococcus thermophilus is a Gram-positive, spherical-shaped microbe that thrives in thermophilic environments, classified as a Chemoheterotroph, and can be found in various body sites of humans and animals, including the mouth, gut, and urinary tract. As a Facultative Anaerobe, it can survive in both aerobic and anaerobic conditions, allowing it to adapt to diverse environments. The Gram-positive cell wall of S. thermophilus provides it with a unique structure, composed of a thick peptidoglycan layer, which contributes to its resistance to environmental stressors. Its spherical shape, also known as cocci, enables it to form chains and aggregates, facilitating its colonization and persistence in different ecological niches. As a thermophilic microbe, S. thermophilus grows optimally at high temperatures, typically between 40°C to 50°C, which allows it to outcompete other microbes in warm environments. Its chemoheterotrophic nature means that it relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth and metabolism. The ability of S. thermophilus to inhabit various body sites and survive in different oxygen levels makes it a versatile microbe, capable of interacting with its host and environment in complex ways. S. thermophilus plays a crucial role in the production of yogurt and cheese, where it contributes to the fermentation process, producing lactic acid and creating the characteristic texture and flavor of these dairy products, and its unique properties have also led to its use as a probiotic, promoting gut health and immune system function." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1308 VBTK00000000.1 Bac0000540 Streptococcus agalactiae "Streptococcus agalactiae, also known as Group B strep, is a gram-positive, aerotolerant anaerobic bacterium that thrives in a temperature range of 20-40°C, placing it in the mesophilic category. As a chemoheterotroph, S. agalactiae obtains its energy by breaking down organic molecules in the presence of oxygen, but it can also survive in anaerobic environments. Its energy production process involves fermentation of glucose and other carbohydrates, resulting in the production of lactic acid and other compounds. In terms of morphology, S. agalactiae is a spherical or oval-shaped bacterium that typically grows in chains or pairs. This shape is characteristic of streptococci, a group of bacteria that share similar morphology. S. agalactiae is found in all body sites, including the skin, mucous membranes, and gastrointestinal and genitourinary tracts, and can also be present in the environment. As an aerotolerant anaerobe, S. agalactiae can grow in the presence of oxygen, but it does not require it to survive. This flexibility allows it to thrive in a wide range of environments. Its oxygen preference is intermediate, meaning it can tolerate some oxygen but also grows well in low-oxygen environments. In addition to its ecological adaptability, S. agalactiae is also notorious for its ability to cause serious infections in humans, particularly in newborns, pregnant women, and individuals with compromised immune systems. It is a significant cause of sepsis, meningitis, and pneumonia, and can also cause more localized infections, such as skin and soft tissue infections. Despite its pathogenic potential, S. agalactiae has also been found to have beneficial effects in certain contexts. For example, it has been shown to play a role in maintaining the balance of the vaginal microbiome, and may even have anti-cancer properties. Further research is needed to fully understand the complex interactions between S. agalactiae and its human hosts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1311 PNOV00000000.1 Bac0000541 Streptococcus pneumoniae "Streptococcus pneumoniae is a Gram-positive, spherical-shaped microbe that thrives in a temperature range of 25-40°C, classified as a mesophile. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, primarily glucose, as its primary energy source. Energy production occurs through the process of fermentation, characteristically producing lactic acid as a byproduct. Streptococcus pneumoniae is a Gram-positive bacterium, meaning it retains the purple stain of Gram's method, indicating a thick peptidoglycan layer in its cell wall. Its spherical shape, also known as a coccus, allows for easy identification under microscopy. These microorganisms can be found in various body sites, including the respiratory, gastrointestinal, and genital tracts, as well as the oral cavity. As an obligate aerobe, Streptococcus pneumoniae requires the presence of oxygen to survive and multiply. In the human body, it often colonizes the nasopharynx, where it can be found in high concentrations. In addition to its usual habitat, it can also be found in other body sites, such as the ears, sinuses, and joints, where it can cause various diseases. Streptococcus pneumoniae has played a significant role in human history, being responsible for devastating pandemics and outbreaks throughout the centuries, leading to the development of vaccines and antibiotic treatments. Despite its reputation as a pathogen, this microbe has also been a valuable model organism in research, providing insights into the biology of bacterial pathogenesis and the development of novel therapeutic strategies." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CLFU00000000.1 Bac0000542 Staphylococcus hominis "Staphylococcus hominis is a Gram-positive, cocci-shaped bacterium that typically arranges itself in chains or pairs. This organism is part of the Staphylococcus genus and is known to thrive in a variety of habitats, indicating its adaptability to different environmental conditions. S. hominis is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments, which further enhances its ecological versatility.↵↵Optimal growth occurs at 30°C, suggesting a preference for moderate temperatures often found in human-associated environments, such as skin and mucous membranes. Given its broad habitat range and specific growth requirements, S. hominis may play a significant role in the microbial communities present on human skin, where it can contribute to the overall skin microbiome dynamics.↵↵The ability to form chains or pairs may influence its interactions with other microorganisms and host tissues, potentially impacting its ecological niche. This organism's facultative anaerobic nature indicates that it can adapt to varying levels of oxygen, which may provide it an advantage in fluctuating environments, including those found on the human body. Overall, the traits of Staphylococcus hominis suggest that it is a resilient microbe capable of cohabiting with a diverse array of other microbial species while adapting to its surroundings." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus hominis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FDPE00000000.1 Bac0000543 Streptococcus pyogenes "Streptococcus pyogenes is a beta-hemolytic, Gram-positive bacterium that thrives in a mesophilic temperature preference category, ranging from 25°C to 40°C. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, typically found in the human body. S. pyogenes produces energy through aerobic respiration, utilizing oxygen as its primary electron acceptor. The Gram staining technique reveals a positive reaction, indicating the presence of a thick peptidoglycan layer in the bacterial cell wall. These spherical-shaped bacteria are typically found in pairs or chains, giving them a characteristic ""chain-like"" appearance. S. pyogenes can be found in various body sites, including the skin, throat, and genital and gastrointestinal tracts. Its ability to grow in the presence of oxygen, coupled with its tolerance for low oxygen levels, makes it a facultative anaerobe. This flexibility allows the bacterium to thrive in a wide range of environments. Streptococcus pyogenes is a significant human pathogen, responsible for causing respiratory tract infections, such as strep throat, and skin and soft tissue infections like impetigo. It is also a major cause of invasive diseases, including septicemia and rheumatic fever. Despite its pathogenic nature, S. pyogenes is an essential part of the human microbiome, playing a crucial role in shaping the immune system and modulating the host's response to other pathogens. Furthermore, S. pyogenes is a key species in the development of vaccines and therapeutic strategies against streptococcal infections. Research on this microbe has led to a deeper understanding of the mechanisms underlying its pathogenesis and the development of effective treatment options. As a result, Streptococcus pyogenes remains an important focus of microbiological research, with ongoing studies aiming to combat its severe diseases and harness its potential in immunotherapy and vaccine development." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SDMF00000000.1 Bac0000544 Streptococcus parasanguinis "Streptococcus parasanguinis is a gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites, including the oral cavity, respiratory tract, and gastrointestinal tract, across all possible species. As a facultative anaerobe, Streptococcus parasanguinis can survive in both aerobic and anaerobic environments, allowing it to adapt to different conditions within the human body. The gram-positive characteristic of Streptococcus parasanguinis indicates the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram staining procedure. Its spherical shape, also known as cocci, is typical of streptococcal species. The mesophilic temperature preference of Streptococcus parasanguinis means it grows best in moderate temperatures, between 20-45°C, making it well-suited to the human body's average temperature. As a chemoheterotroph, Streptococcus parasanguinis requires organic compounds for energy and carbon sources, which it obtains from its host or environment. Its ability to inhabit various body sites is likely due to its facultative anaerobic nature, allowing it to thrive in areas with varying oxygen levels. Streptococcus parasanguinis has been implicated in the formation of biofilms on oral surfaces, which can lead to the development of dental plaque and other oral health issues. The microbe's ability to interact with other oral bacteria and host cells has led to research on its potential role in shaping the oral microbiome and its impact on overall health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1318 RJNG00000000.1 Bac0000545 Faecalicoccus pleomorphus "Faecalicoccus pleomorphus is a gram-positive, variably shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites across different species, including the gastrointestinal tract, skin, and respiratory tract, and is an obligate anaerobe. The gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, which helps maintain its shape and provides resistance to environmental stresses. The variably shaped morphology of Faecalicoccus pleomorphus allows it to adapt to different environments and evade the host's immune system. As a mesophile, it grows best in moderate temperatures, typically between 20-45°C, which is ideal for its survival in the human body.As a chemoheterotroph, Faecalicoccus pleomorphus relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its growth and survival. Its presence in various body sites across different species suggests that it is a commensal or opportunistic pathogen, taking advantage of available nutrients and resources. The obligate anaerobic nature of Faecalicoccus pleomorphus means that it requires an oxygen-free environment to grow, which is often found in the gastrointestinal tract and other areas of the body with low oxygen levels. The ability of Faecalicoccus pleomorphus to thrive in diverse environments and its role in the microbiome has led to research on its potential impact on human health, including its involvement in the development of certain diseases and its potential as a biomarker for diagnostic purposes. Faecalicoccus pleomorphus has been found to produce short-chain fatty acids, which can influence the host's immune system and overall health, highlighting the complex interactions between the microbe and its host." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Faecalicoccus Faecalicoccus pleomorphus Cocci No 1 anaerobic Animal intestinal microflora Nonsporulating 1323 UHFX00000000.1 Bac0000546 Streptococcus acidominimus "Streptococcus acidominimus is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains. This organism is classified as a microaerophile, indicating that it thrives in environments with reduced oxygen levels. The chain arrangement of its cells is a notable feature that distinguishes it from other bacterial morphologies.↵↵The metabolic capabilities of S. acidominimus, although not explicitly detailed, suggest an adaptation to specific niches where oxygen concentrations are limited, possibly allowing it to inhabit environments such as certain human or animal mucosal surfaces where microaerophilic conditions are prevalent. This particular oxygen requirement could influence its interactions within complex microbiomes, potentially affecting the overall microbial balance and dynamics.↵↵Further research into S. acidominimus may elucidate its role in various ecosystems, particularly in environments where microaerophilic conditions are common. The organism’s unique morphological and physiological traits highlight its potential importance in understanding the diversity of microbial life in specific ecological contexts, especially in relation to its interactions with other microbial species and its contributions to the metabolic processes within those communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus acidominimus positive Cocci microaerophile Chains 1326 MSJL00000000.1 Bac0000547 Streptococcus anginosus str. CALM001 "Streptococcus anginosus strain CALM001 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C, making it well-suited to its habitat within the host gut. As a chemoheterotroph, this strain derives its energy from organic compounds, reflecting its adaptation to the nutrient-rich environment of the gastrointestinal tract. Furthermore, as a facultative anaerobe, S. anginosus CALM001 can respire in both the presence and absence of oxygen, allowing it to survive in the varying oxygen conditions found within the gut microbiome.↵↵The presence of S. anginosus in the gut suggests a potential role in the complex microbial community and may contribute to metabolic processes that benefit the host. Its adaptability to oxygen levels in the gut ecosystem may facilitate interactions with other microbial species, possibly influencing gut health and homeostasis. This strain exemplifies the diverse metabolic capabilities of gut-dwelling bacteria, highlighting the intricate balance of microbial life that supports host physiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating Human 1328 QWDL00000000.1 Bac0000548 Streptococcus anginosus "Streptococcus anginosus is a Gram-positive, chemo-heterotrophic, anaerobic microbe that thrives in a temperature range of 25-40°C, making it a mesophilic microorganism. It is classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen and requires a low-oxygen or oxygen-free environment to grow. This microbe derives its energy by breaking down organic compounds, specifically carbohydrates, peptides, and fats, using anaerobic respiration. Streptococcus anginosus has a spherical shape, often occurring in chains or pairs, and is typically 0.5-1.0 μm in diameter. It is a facultative anaerobe, capable of tolerating brief exposure to oxygen, but ultimately requires an anaerobic environment for optimal growth. This microbe is often found in all body sites, including the oral cavity, respiratory tract, gastrointestinal tract, skin, and female genital tract, and has been isolated from various environmental sources, such as soil, water, and food. In terms of its metabolism, S. anginosus is a chemoheterotroph, meaning it uses organic compounds as both its energy source and source of carbon. It produces energy through anaerobic respiration, specifically by fermenting glucose and other simple sugars, producing lactic acid as its primary byproduct. S. anginosus has been linked to various diseases, including invasive infections, such as endocarditis, arthritis, and pneumonia. It is also a causative agent of periodontal disease and dental caries, owing to its ability to adhere to tooth surfaces and utilize sugars from dental plaque. This microbe's ability to tolerate a wide range of temperatures and its presence in various environments, combined with its role in human disease, makes it an important subject of study in the fields of microbiology and medicine." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating Human 1328 PVTB00000000.1 Bac0000549 Streptococcus canis "Streptococcus canis is a Gram-positive, spherical-shaped (coccus) microbe that thrives in a temperature range of 25-37°C, falling under the category of mesophilic organisms. It is a chemoheterotroph, meaning it derives its energy by breaking down organic compounds, such as glucose, for growth and reproduction. Through fermentation, S. canis produces lactic acid as its primary energy source. During Gram staining, S. canis exhibits a distinctive purple color due to the presence of peptidoglycan in its cell wall, characteristic of Gram-positive bacteria. The microbe's spherical shape allows it to conform to its environment and facilitates cell-to-cell interactions. Streptococcus canis is commonly found in various body sites, including the upper respiratory tract, skin, and gastrointestinal tract, in dogs and other animals. However, it can also be isolated from human skin and feces. As an obligate aerobe, S. canis requires the presence of oxygen to survive and grow. It is sensitive to anaerobic conditions and will not thrive in environments devoid of oxygen. Despite its relatively simple metabolic processes, S. canis has been linked to various diseases in dogs, including upper respiratory infections, skin infections, and septicemia. In humans, it can cause food poisoning and skin infections. What's more, S. canis has been shown to possess a unique ability to produce a family of enzymes known as caseinase, which breaks down milk proteins. This property has led researchers to explore its potential applications in the field of biotechnology, particularly in the development of cheese-making processes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus canis positive Cocci No 1 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Animal 1329 BEWZ00000000.1 Bac0000550 Streptococcus equinus "Streptococcus equinus is a Gram-positive, catalase-negative bacterium that thrives in a temperature range of psychrophilic to mesophilic, preferring temperatures between 20°C and 40°C. As a chemoheterotroph, it obtains its energy by breaking down organic molecules, specifically glucose, as its primary energy source. This process occurs through the fermentation of glucose, producing acetate, lactate, and ethanol as its byproducts. As a Gram-positive bacterium, Streptococcus equinus exhibits a thick peptidoglycan layer in its cell wall, which reacts positively with Gram stain. Its morphology features a spherical or ellipsoidal shape, typically ranging from 0.5 to 1.5 μm in length. Streptococcus equinus is found to inhabit the gastrointestinal tract of horses, as well as other mammals, and is also present on the skin and mucous membranes of various body sites, including the respiratory, gastrointestinal, and urogenital tracts. Its ability to colonize these diverse sites suggests its adaptability to different environments. As an aerotolerant anaerobe, Streptococcus equinus is capable of growing in the presence of oxygen, but its metabolism is more proficient in the absence of oxygen. In the presence of oxygen, it can ferment glucose anaerobically, while in its absence, it resorts to fermentative metabolic pathways. Streptococcus equinus, a significant component of the equine gut microbiome, plays a crucial role in fermenting dietary fibers, which contributes to the breakdown of complex carbohydrates and the production of short-chain fatty acids. In addition, its ability to produce antioxidants and anti-inflammatory compounds has been implicated in the protection of the host against intestinal pathogens." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe dairy farms; dairy products; gastrointestinal tracts of ruminants; rumen 1335 FZRA00000000.1 Bac0000551 Streptococcus lutetiensis "Streptococcus lutetiensis is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites, including the oral cavity, respiratory tract, and gastrointestinal tract, across different species. As a Facultative Anaerobe, S. lutetiensis can survive in both aerobic and anaerobic environments, making it a versatile microorganism. The Gram-positive characteristic of S. lutetiensis indicates that it has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining procedure. Its spherical shape, also known as cocci, allows it to aggregate in chains or pairs, which is a common feature among streptococci. The mesophilic temperature preference of S. lutetiensis means it grows best in moderate temperatures, typically between 20-45°C. As a Chemoheterotroph, S. lutetiensis relies on chemical compounds for energy and carbon sources, which it obtains from its environment. Its ability to inhabit various body sites across different species makes it a opportunistic pathogen, capable of causing disease in vulnerable hosts. The Facultative Anaerobe nature of S. lutetiensis enables it to adapt to different oxygen levels, allowing it to thrive in a wide range of environments. S. lutetiensis has been isolated from patients with endocarditis, a serious infection of the heart valves, highlighting its potential to cause severe disease. Its ability to form biofilms and produce virulence factors, such as adhesins and hemolysins, contributes to its pathogenicity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus lutetiensis Positive Cocci Facultative anaerobe dairy farms; dairy products; gastrointestinal tracts of ruminants; rumen 1335 NZ_LR134203.1 Bac0000552 Streptococcus hyointestinalis "Streptococcus hyointestinalis is a Gram-positive bacterium characterized as a microaerophile, meaning it requires lower levels of oxygen for optimal growth compared to atmospheric concentrations. This species is part of the diverse genus Streptococcus, which is known for its varied ecological niches and roles in different environments.↵↵S. hyointestinalis is typically found in the intestinal tract of animals, indicating its adaptation to a specific host-associated habitat. The microaerophilic nature of this bacterium suggests that it thrives in environments where oxygen levels are limited, which is consistent with the anaerobic conditions often present in the intestinal microbiota. ↵↵The physiological traits of S. hyointestinalis indicate that it may play a role in the complex interactions within the gut microbiome, contributing to the anaerobic fermentation processes essential for the digestion of various substrates. The presence of this bacterium in the intestinal environment could provide insights into the microbial dynamics that support host health, particularly in relation to gut microbial balance and function. ↵↵Overall, S. hyointestinalis exemplifies the intricate relationships between microbial life and host organisms, highlighting the importance of microaerophilic bacteria in maintaining the stability and functionality of the gut ecosystem." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus hyointestinalis positive microaerophile 1337 UHFN00000000.1 Bac0000553 Streptococcus intermedius "Streptococcus intermedius is a Gram-positive, catalase-negative bacterium that thrives in a temperature range of mesophilic to thermophilic conditions, typically between 25°C to 37°C. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, such as sugars, proteins, and fats. This process occurs through a variety of mechanisms, including fermentation, where S. intermedius converts glucose into lactic acid, and anaerobic respiration, where it utilizes oxygen to generate energy. Microscopically, S. intermedius appears as a spherical or ovoid-shaped cell, often forming chains or pairs. Its Gram staining property allows for visualization of its peptidoglycan layer, which is composed of peptidoglycan and teichoic acids. This characteristic distinguishes it from other bacterial species with similar morphologies. A key aspect of S. intermedius is its ability to inhabit a wide range of body sites, including the respiratory, gastrointestinal, and urogenital tracts. In fact, it has been isolated from all possible body sites in all species, making it a ubiquitous and opportunistic microbe. In terms of oxygen preference, S. intermedius is an obligate anaerobe, meaning it cannot survive in the presence of oxygen. This is because its respiratory enzymes are adapted to function in the absence of oxygen, and exposure to oxygen would lead to its rapid demise. Despite its limited oxygen tolerance, S. intermedius has developed a unique ability to produce compounds that inhibit the growth of other microorganisms, allowing it to outcompete and dominate its environment. Additionally, its ability to form biofilms, complex communities of bacteria, allows it to adhere to surfaces and evade host defenses. This remarkable adaptability has made S. intermedius a resilient and successful microbe in a variety of ecological niches. Notably, S. intermedius is a significant pathogen, causing diseases such as necrotizing fasciitis, a severe skin infection, and septicemia, a life-threatening bloodstream infection. Its ability to evade host defenses and produce potent toxins has earned it a reputation as a formidable opponent in the human gut microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus intermedius Positive Cocci Facultative anaerobe brain abscesses; dental plaques; mouth; oral cavity "Pairs, Chains" Animal 1338 RJOK00000000.1 Bac0000554 Streptococcus porcinus "Streptococcus porcinus is a gram-positive, facultative anaerobic bacterium that thrives in a mesophilic temperature range, preferring temperatures between 20-40°C. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, relying on the reduction of iron and sulfur compounds as its primary mechanism of energy production. The bacterium exhibits a spherical or oval shape, typically ranging from 0.5-1.0 μm in diameter. Its cell wall is composed of peptidoglycan, a characteristic of gram-positive bacteria. Upon Gram staining, S. porcinus would exhibit a positive reaction, indicating the presence of peptidoglycan in its cell wall. S. porcinus can be found in various body sites, including the skin, mucous membranes, and respiratory and genitourinary tracts. Its ubiquity across multiple species suggests its ability to adapt to diverse environments and exploit various nutrient sources. As a facultative anaerobe, S. porcinus can thrive in both aerobic and anaerobic environments, but its growth rate is optimized in the presence of oxygen. However, it can survive and even grow in low-oxygen or oxygen-free conditions, demonstrating its adaptability to changing environmental conditions. In addition to its remarkable adaptability, S. porcinus has been found to play a crucial role in the decomposition of organic matter, particularly in soil ecosystems. Its ability to break down complex organic compounds and release nutrients has significant implications for soil fertility and plant growth. Further research on S. porcinus has led to its potential application in bioremediation strategies, as it can effectively degrade pollutants and heavy metals. Its ability to thrive in diverse environments and its versatile metabolic capabilities make S. porcinus a valuable subject of study, offering opportunities for innovative uses in fields such as environmental cleanup, agriculture, and medicine." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudoporcinus Positive Cocci No 1 Chemoheterotroph Animal intestinal microflora Chains Nonsporulating 1340 NZ_LR594035.1 Bac0000555 Streptococcus vestibularis "Streptococcus vestibularis is a microbe that thrives in a mesophilic environment, preferring temperatures between 25-40°C. Its metabolism is characterized as heterotrophic, meaning it obtains energy by breaking down external organic compounds. As a chemoheterotroph, it uses an organic carbon source for energy and relies on the fermentation of glucose to produce pyruvate, which is then converted into energy.Gram stain reveals that S. vestibularis is a Gram-positive bacterium, characterized by its thick peptidoglycan layer. The microbe's shape is that of a diplococcus, meaning it appears as paired cocci or spherical cells. S. vestibularis is found in a variety of body sites, specifically, it has been isolated from the human oral cavity and respiratory tract. As an aerotolerant anaerobe, it can survive in the presence of oxygen but prefers to grow in the absence of oxygen. This characteristic allows it to thrive in environments with limited oxygen availability, such as the human mouth. In addition to its ability to survive in low-oxygen environments, S. vestibularis is also sensitive to the presence of oxygen, requiring strictly anaerobic conditions for optimal growth. This adaptation is likely due to the evolution of its enzymes and metabolic pathways to function effectively in the absence of oxygen. Despite being a relatively understudied microbe, research has highlighted its potential role in the pathogenesis of diseases such as otitis media and tonsillitis. Its ability to adhere to epithelial cells and evade host immune responses makes it a promising target for therapeutic interventions. Further research is needed to fully understand the biology and pathogenic potential of S. vestibularis, but its unique characteristics make it an intriguing subject for study." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus vestibularis Positive Cocci Facultative anaerobe nose/throat; oral cavity 1343 QSTK00000000.1 Bac0000556 Streptococcus ferus "Streptococcus ferus is a gram-positive, facultative anaerobic bacterium that thrives in a temperature range of 20-40°C, making it a mesophile. As a heterotroph, S. ferus derives its energy by breaking down organic compounds, specifically lactose and other carbohydrates, through fermentation. This process produces lactic acid as a byproduct, which is a characteristic of streptococci. The bacterium's energy production is anaerobic, meaning it can survive and grow in the absence of oxygen. S. ferus is a spherical, catalase-negative microbe, exhibiting a characteristic streptococcal shape. It can be found colonizing various body sites, including the mouth, skin, and respiratory and genital tracts, in all human species. As a facultative anaerobe, S. ferus is capable of growing in the presence or absence of oxygen. It can tolerate low levels of oxygen but can also survive in anaerobic environments, such as deep in tissues or in the absence of oxygen. This adaptability allows the bacterium to thrive in different ecological niches. In terms of its role in the host, S. ferus is not typically considered a pathogen, but it can cause opportunistic infections in individuals with compromised immune systems. For instance, S. ferus has been implicated in cases of endocarditis, sepsis, and osteomyelitis. In addition to its clinical significance, S. ferus has also been studied for its potential applications in biotechnology. As a producer of lactic acid, S. ferus has been explored as a candidate for industrial-scale fermentation of this valuable compound." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus ferus Positive Cocci No 1 microaerophile 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1345 NZ_LS483343.1 Bac0000557 Streptococcus iniae "Streptococcus iniae is a facultative anaerobic, gram-positive, catalase-negative bacterium that thrives in temperatures between 25°C to 40°C, falling under the temperature preference category of ""mesophilic"" (range: 10°C to 45°C). This microbe is a heterotroph, obtaining its energy by breaking down organic compounds, specifically glucose, through a process known as fermentation. As a facultative anaerobe, it can grow in the presence or absence of oxygen, but tends to favor environments with limited oxygen availability. S. iniae has a spherical or oval shape, typically measuring 0.5-1.0 μm in diameter. It is a gram-positive bacterium, meaning its peptidoglycan cell wall contains a thick layer of peptidoglycan, which provides structural support and protection. It is found in various body sites, including the skin, mucous membranes, and respiratory, gastrointestinal, and genitourinary tracts of humans and animals. In terms of its energy production, S. iniae uses anaerobic respiration, specifically fermentation, to generate energy and produce ATP. It can also grow in the presence of oxygen, using aerobic respiration to produce energy. Streptococcus iniae is a significant pathogen, causing severe infections in humans and animals, such as streptococcal sepsis, meningitis, and endocarditis. It is typically transmitted through contact with contaminated surfaces, infected animals, or contaminated food and water. One notable aspect of S. iniae is its ability to form biofilms, complex communities of microorganisms that adhere to surfaces and secrete a matrix of extracellular polymers. Biofilms provide protection against host immune responses and antimicrobial agents, allowing S. iniae to persist and thrive in infected tissues. Overall, Streptococcus iniae is a significant pathogen that requires careful attention to its characteristics and behaviors to prevent and treat infections. Its ability to form biofilms and adapt to various environments underscores the importance of understanding its biology and developing effective therapeutic strategies." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus iniae positive Cocci No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating Animal; Human 1346 QLQD00000000.1 Bac0000558 Streptococcus parauberis str. SPOF3K "Streptococcus parauberis strain SPOF3K is a Gram-positive coccus that thrives in aquaculture environments, exhibiting a facultative anaerobic metabolism. This organism's spherical shape and ability to adapt to varying oxygen levels suggest a versatile ecological role in aquatic systems, potentially influencing microbial dynamics in fish farming settings. ↵↵As a facultative anaerobe, S. parauberis str. SPOF3K can metabolize substrates in both the presence and absence of oxygen, which may enhance its survival and activity in fluctuating environmental conditions typical of aquaculture. The adaptation to aquatic habitats indicates its potential involvement in nutrient cycles and interactions with other microbial communities within these ecosystems.↵↵Understanding the physiological traits of S. parauberis str. SPOF3K is crucial for further research into its ecological interactions and potential applications in aquaculture management. The organism may contribute to the microbial diversity necessary for maintaining fish health and water quality, although specific interactions with host organisms or other microbes warrant further investigation." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parauberis Positive Cocci Facultative anaerobe aquaculture 1348 NZ_CP025421.1 Bac0000559 Streptococcus parauberis "Streptococcus parauberis is a non-motile, Gram-positive, catalase-negative bacterium that thrives in a temperature range of 35-40°C, categorizing it as a mesophilic organism. Metabolically, S. parauberis is a chemoheterotroph, utilizing complex organic compounds as its energy source. It produces energy through the breakdown of these organic molecules, a process facilitated by cellular respiration. In terms of its Gram stain, S. parauberis exhibits the characteristic purple-red coloration, indicating a Gram-positive bacterial cell. In terms of shape, S. parauberis is a spherical or oval-shaped bacterium, typically measuring 0.5-1.5 μm in diameter. It is commonly found on the skin and mucous membranes of various body sites, including the oropharynx, nasopharynx, and gastrointestinal tract. The microorganism is an obligate anaerobe, requiring a low oxygen environment to survive and thrive. One of the key features of S. parauberis is its ability to produce exotoxins, which play a crucial role in its pathogenicity. Its genome encodes for several virulence factors, including adherence, invasion, and toxin production, allowing it to cause disease in humans. When present in an oropharyngeal or nasopharyngeal infection, S. parauberis can cause pharyngitis, tonsillitis, or otitis media. Notably, S. parauberis is often co-isolated with other streptococci, such as Streptococcus pyogenes, and can be mistaken for other species due to its similar morphology and biochemical characteristics. However, distinct genetic differences and phylogenetic analysis can be employed to accurately identify S. parauberis. Further research is needed to fully understand the ecology and pathogenesis of this microorganism, as well as its potential role in human disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parauberis Positive Cocci Facultative anaerobe aquaculture 1348 LHAE00000000.1 Bac0000560 Streptococcus parauberis str. SK-417 "Streptococcus parauberis strain SK-417 is a Gram-positive coccus that thrives in aquaculture environments, exhibiting facultative anaerobic growth capabilities. This microbe's spherical shape is characteristic of the Streptococcus genus, which is known for its diverse ecological roles and interactions within aquatic ecosystems. ↵↵As a facultative anaerobe, S. parauberis str. SK-417 can adapt to varying oxygen levels, allowing it to survive in both oxygen-rich and low-oxygen conditions commonly found in aquaculture systems. This adaptability is crucial in environments where oxygen availability may fluctuate due to factors such as water quality, density of aquatic organisms, and organic load. ↵↵In the context of aquaculture, the presence of Streptococcus parauberis str. SK-417 may indicate its potential role in microbial communities associated with fish or shellfish farming, possibly contributing to nutrient cycling or influencing the microbial dynamics within aquaculture systems. Understanding the specific interactions and functions of this strain could provide insights into maintaining healthy aquatic environments and optimizing aquaculture practices." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parauberis Positive Cocci Facultative anaerobe aquaculture 1348 BAWT00000000.1 Bac0000561 Streptococcus uberis "Streptococcus uberis is a Gram-positive, facultatively anaerobic bacterium that thrives in a temperature range of 20-40°C, making it a mesophilic microorganism. Metabolically, S. uberis is a heterotroph, utilizing pre-existing organic compounds as its energy source. It produces energy through the process of fermentation, specifically lactic acid fermentation, which allows it to survive in various environments. The Gram stain reaction indicates that S. uberis has a thick peptidoglycan layer, characteristic of Gram-positive bacteria. In terms of shape, S. uberis is a coccus, meaning it has a spherical or oval morphology. As an opportunistic pathogen, it can be found inhabiting various body sites, including the skin, respiratory tract, and genitourinary tract. The bacterium is also capable of infecting animals, particularly cattle and pigs. S. uberis is an obligate anaerobe, meaning it requires a low oxygen environment to survive. However, it can tolerate aerobic conditions and is often found in environments with limited oxygen availability, such as the human gut. This adaptability allows it to thrive in a wide range of ecological niches. Some isolates of S. uberis have been reported to produce bioactive compounds, including antibiotics and antimicrobial peptides. Additionally, researchers have identified a potential novel antibiotic target in S. uberis, providing opportunities for the development of new therapeutic agents. Furthermore, S. uberis has been studied as a potential probiotic, exhibiting immunomodulatory properties and the ability to colonize the human gut. Overall, Streptococcus uberis is a versatile microorganism with a broad range of ecological and biomedical implications." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus uberis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Multiple Free living Chains - Pairs 1349 NZ_LS483408.1 Bac0000562 Enterococcus faecalis str. C54 "Enterococcus faecalis strain C54 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, making it versatile in various environments. This strain optimally thrives at a temperature of 37.0°C and utilizes organic compounds as its primary energy source, categorizing it as a chemoorganotroph. ↵↵Enterococcus faecalis is known to inhabit diverse ecological niches, which may include human and animal intestinal tracts, as well as various environmental sources. The ability to grow in both aerobic and anaerobic conditions allows this microorganism to adapt to fluctuating oxygen levels in its habitat. Such adaptability is significant for its survival and potential roles in microbial communities.↵↵The characteristics of E. faecalis str. C54 highlight its ecological versatility, suggesting that it could play a role in nutrient cycling or contribute to the microbial balance within its environments. Understanding these traits can provide insights into the organism's behavior and interactions within its ecological niche, potentially influencing both its function and survival strategies in diverse settings." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_CP030046.1 Bac0000563 Enterococcus faecalis str. HA-1 "Enterococcus faecalis str. HA-1 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. This strain is classified as a chemoorganotroph, indicating that it derives energy by oxidizing organic compounds, which allows it to inhabit diverse environments. Enterococcus faecalis, as a species, is known for its versatile metabolic capabilities, enabling it to survive in various ecological niches, including the gastrointestinal tracts of humans and animals, as well as in hospital settings.↵↵The coccal morphology of E. faecalis str. HA-1 contributes to its resilience in different habitats, where it can adapt to varying levels of oxygen availability. Its facultative anaerobic nature allows it to switch between aerobic respiration and fermentation depending on the oxygen conditions, further enhancing its survival and proliferation in fluctuating environments. ↵↵In summary, Enterococcus faecalis str. HA-1 exemplifies a microbe well-adapted to diverse habitats through its metabolic flexibility and robust morphological characteristics. This adaptability may play a significant role in its ecological interactions and survival strategies, suggesting a nuanced relationship with its environment that warrants further investigation." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_CP040898.1 Bac0000564 Enterococcus faecalis str. YM0831 "Enterococcus faecalis str. YM0831 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism. This organism is classified as a chemoorganotroph, indicating it derives energy from organic compounds. The optimal growth temperature for E. faecalis str. YM0831 is 37.0°C, which is consistent with the typical mammalian host body temperature, suggesting a potential adaptation for survival in warm-blooded animals.↵↵The habitat of E. faecalis str. YM0831 is diverse, allowing it to thrive in various environments. This adaptability may contribute to its ecological resilience, facilitating its presence in multiple niches, including those associated with human and animal microbiomes. The combination of its Gram-positive structure and metabolic flexibility highlights the organism's potential role in nutrient cycling within its habitats. ↵↵Understanding the traits of Enterococcus faecalis str. YM0831 offers insights into its ecological dynamics, particularly in environments where organic matter is abundant, as it can efficiently utilize available resources. This metabolic versatility may also influence interspecies interactions within microbial communities, which can be critical in both natural ecosystems and clinical settings." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 SJRZ00000000.1 Bac0000565 Enterococcus faecalis "Enterococcus faecalis is a gram-positive, facultative anaerobic bacterium that thrives in a variety of temperatures, ranging from 20°C to 45°C, and thereby falls under the ""mesophilic"" temperature preference category. As a heterotroph, it obtains its energy by breaking down organic matter, specifically glucose and other carbohydrates, using cellular respiration to produce ATP. Its metabolism is characterized by the presence of cytochromes and flavoproteins, which are essential for energy production. As a gram-positive bacterium, Enterococcus faecalis has a thick peptidoglycan layer in its cell wall, which gives it a distinctive staining pattern when subjected to the gram stain. The bacterium's shape is typically spherical or ovoid, with a size ranging from 0.5 to 1.0 μm in diameter. Enterococcus faecalis is found on all body sites, including the oral cavity, gut, genital tract, and skin, and is part of the normal flora of the human body. Its ability to adapt to different environments and thrive in a range of oxygen conditions makes it a ubiquitous microbe. As an obligate anaerobe, Enterococcus faecalis is unable to survive in the presence of high levels of oxygen and instead thrives in environments with limited oxygen availability. This is achieved through the production of oxygen-scavenging enzymes and the ability to reduce oxygen to water and hydrogen peroxide. Despite its opportunistic nature, Enterococcus faecalis has been found to play a significant role in the human body, contributing to nutrient cycling and the maintenance of gut health. It has also been implicated in a range of diseases, including antibiotic-associated diarrhea, urinary tract infections, and bloodstream infections. In addition, Enterococcus faecalis has been found to have a unique ability to form biofilms, complex communities of microorganisms embedded in a matrix of extracellular polymeric substances, which provide protection against antibiotics and the host immune system. This ability contributes to its persistence in the body and makes it a challenging target for antimicrobial therapy." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PTVE00000000.1 Bac0000566 Enterococcus faecalis str. C25 "Enterococcus faecalis strain C25 is a Gram-positive, nonsporulating coccus that optimally grows at 37.0°C and functions as a chemoorganotroph, utilizing organic compounds for energy. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. faecalis is known to inhabit a variety of ecological niches, suggesting a versatile adaptability to different habitats, which may include both human-associated and environmental settings.↵↵The coccoid morphology of E. faecalis C25 contributes to its ability to form clusters or pairs, a characteristic that may enhance its survival and persistence in diverse environments. Its facultative anaerobic nature allows for metabolic flexibility, enabling it to exploit varying oxygen levels, thereby facilitating its presence in both aerobic and microaerophilic conditions.↵↵The versatility of E. faecalis C25 in utilizing a range of organic substrates as an energy source reflects its ecological significance, particularly in nutrient cycling within its habitats. Its ability to thrive in multiple environments underscores its importance in microbial communities, where it may play a role in organic matter decomposition and nutrient availability. This adaptability may also contribute to its persistence in various niches, which can be critical for maintaining microbial diversity and ecosystem functionality." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_CP030043.1 Bac0000567 Enterococcus faecalis str. Enfs51 "Enterococcus faecalis strain Enfs51 is a Gram-positive cocci that exhibits a facultative anaerobic metabolism and is classified as a chemoorganotroph, relying on organic compounds for energy. This strain thrives optimally at 37.0°C, which is consistent with the temperature range found in mammalian hosts, suggesting an adaptation to warm-blooded environments. Enterococcus faecalis is known for its widespread habitat, often found in diverse environments, including the gastrointestinal tracts of humans and animals, as well as in various ecological niches such as soil and water.↵↵Notably, this strain is nonsporulating, indicating that it does not form spores as a means of survival under unfavorable conditions. Instead, Enfs51 may employ other survival strategies to withstand environmental challenges. The facultative anaerobic nature of this strain allows it to grow in both the presence and absence of oxygen, providing it with a metabolic flexibility that may enhance its resilience in variable habitats.↵↵Understanding the traits of Enterococcus faecalis strain Enfs51 contributes to the broader knowledge of the ecological roles played by enterococci, particularly in nutrient cycling and their potential interactions within microbial communities. This adaptability to multiple environments could facilitate its role in the maintenance of microbial diversity and function in its habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 MJEK00000000.1 Bac0000568 Enterococcus faecium str. AALTL "Enterococcus faecium str. AALTL is a Gram-positive, cocci-shaped bacterium that thrives in fermented mare milk, demonstrating its adaptation to unique dairy environments. As a facultative anaerobe, this strain is capable of metabolizing substrates in both the presence and absence of oxygen, allowing it to thrive in varying oxygen conditions that may occur during the fermentation process. ↵↵The habitat of fermented mare milk suggests that E. faecium str. AALTL may play a role in the fermentation dynamics and flavor development of this traditional dairy product. Its ability to survive and proliferate in the complex microbial community of fermented mare milk indicates potential interactions with other microorganisms, which could influence the overall fermentation process and the final characteristics of the product. ↵↵Further exploration of this strain may provide insights into its metabolic capabilities and specific contributions to the fermentation ecosystem, elucidating the roles of Enterococcus species in traditional dairy practices and their potential applications in food biotechnology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP025756.1 Bac0000569 Enterococcus faecium str. E86 "Enterococcus faecium strain E86 is a Gram-positive coccus that exhibits a facultative anaerobic metabolic capability. This strain is notably isolated from fermented mare milk, highlighting its potential role in dairy fermentation processes. The coccus shape of E. faecium lends itself to its classification within the genus Enterococcus, which is known for its resilience in various environments.↵↵The facultative anaerobic nature of E. faecium strain E86 allows it to thrive in both aerobic and anaerobic conditions, which can be advantageous in the complex microflora of fermented products. This adaptability may enable the strain to contribute to the fermentation process by metabolizing different substrates available in fermented mare milk, potentially influencing the flavor and texture of the final dairy product.↵↵The specific habitat of E. faecium strain E86 in fermented mare milk suggests that it could play a critical role in the microbial community dynamics of this niche, possibly interacting with other microorganisms and contributing to the stability and quality of the fermentation. Further studies could elucidate the metabolic pathways utilized by this strain in such environments, providing insights into its functional contributions to dairy fermentation and the broader implications for the use of Enterococcus species in food production." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 SIHT00000000.1 Bac0000570 Enterococcus faecium str. HOU503 "Enterococcus faecium strain HOU503 is a Gram-positive coccus that thrives in the habitat of fermented mare milk. This organism exhibits a facultative anaerobic metabolism, enabling it to grow in both aerobic and anaerobic environments, which may be advantageous in the dynamic conditions of fermented dairy products. The coccoid shape of E. faecium is characteristic of the Enterococcus genus, contributing to its ability to form clusters or pairs, which can influence its interactions within microbial communities.↵↵The specific adaptation of E. faecium strain HOU503 to fermented mare milk suggests potential roles in the fermentation process, possibly contributing to the flavor profile and preservation of the product. Furthermore, the ability to survive in varying oxygen levels may enhance its resilience in the fermentation environment, allowing it to outcompete other microorganisms. As a member of a genus often associated with diverse habitats, this strain may provide insights into the metabolic versatility and ecological significance of Enterococcus species in traditional dairy fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040708.1 Bac0000571 Enterococcus faecium str. HPCN16 "Enterococcus faecium strain HPCN16 is a Gram-positive coccus that exhibits facultative anaerobic metabolism. This strain has been isolated from fermented mare milk, indicating its adaptation to a specific niche within dairy fermentation processes. As a member of the Enterococcus genus, E. faecium is characterized by its ability to survive in varying oxygen conditions, allowing it to thrive in both aerobic and anaerobic environments typically encountered during fermentation. The organism’s presence in mare milk suggests it may play a role in the fermentation process, potentially contributing to the flavor and texture of the final product. ↵↵Furthermore, the utilization of fermented mare milk as a habitat indicates that E. faecium HPCN16 may have unique metabolic capabilities that allow it to exploit lactose and other carbohydrates present in this substrate. Understanding the specific metabolic pathways and interactions of this strain within its habitat could provide insights into the microbial dynamics of fermented dairy products and their potential health benefits. The ability of E. faecium HPCN16 to adapt to the fermentation environment emphasizes the importance of microbial diversity in traditional food production systems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QGNU00000000.1 Bac0000572 Enterococcus faecium str. VREF "Enterococcus faecium strain VREF is a Gram-positive cocci bacterium that exhibits a facultative anaerobic metabolism. This strain is notably found in the habitat of fermented mare milk, indicating its potential involvement in dairy fermentation processes. The ability to thrive in both aerobic and anaerobic conditions suggests that E. faecium VREF possesses versatile metabolic capabilities, which may contribute to its survival in various environments, particularly those associated with dairy products.↵↵As a member of the Enterococcus genus, E. faecium is known for its resilience and adaptability, traits that may be advantageous in fermented ecosystems. The association with mare milk fermentation highlights the role of this microbe in the dairy industry, particularly in the production of traditional fermented products. The fermentation process not only impacts the flavor and preservation of the milk but may also influence the microbial community composition, potentially leading to a variety of metabolic interactions.↵↵Given its specific habitat, E. faecium VREF may play a role in the development of unique sensory attributes of fermented mare milk, which can be of interest for food science and microbiology research. Understanding the ecology and functionality of this strain can provide insights into the broader applications of Enterococcus species in fermentation technology and microbiome studies in dairy environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP019994.1 Bac0000573 Enterococcus faecium "Enterococcus faecium is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in all body sites of various species, including humans, where it resides as a commensal or opportunistic pathogen, and is typically a Facultative Anaerobe. As a Gram-positive microbe, E. faecium has a thick peptidoglycan layer in its cell wall, providing it with resistance to environmental stresses. Its spherical shape allows it to maintain a stable structure, enabling it to survive in diverse environments. The mesophilic temperature preference of E. faecium indicates that it grows best in moderate temperatures, typically between 20-45°C, making it well-suited to inhabit the human body. As a Chemoheterotroph, E. faecium relies on external sources of organic matter for energy and carbon, which it obtains by breaking down complex molecules. Its presence in all body sites, from the skin to the gastrointestinal tract, highlights its adaptability and ability to colonize various niches. The facultative anaerobic nature of E. faecium enables it to thrive in both aerobic and anaerobic environments, allowing it to survive in areas with varying oxygen levels. E. faecium has developed resistance to multiple antibiotics, making it a significant concern in hospital-acquired infections, and its ability to form biofilms enhances its resistance to antimicrobial agents, allowing it to persist in the environment and cause disease." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 MSIC00000000.1 Bac0000574 Enterococcus faecium str. DB-1 "Enterococcus faecium strain DB-1 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is notably isolated from fermented mare milk, indicating its adaptation to a specific niche within dairy fermentation processes. As a member of the Enterococcus genus, E. faecium is characterized by its ability to thrive in various environments, and its presence in fermented mare milk suggests a potential role in the development of unique flavor profiles and preservation of this traditional dairy product. ↵↵Facultative anaerobes such as E. faecium can utilize oxygen when available, but also possess the capability to ferment substrates in anaerobic conditions, thereby enhancing its survival and metabolic versatility in diverse environments. The adaptation to the fermented mare milk habitat may also imply a symbiotic relationship with the host, contributing to the fermentation process while potentially influencing the microbial community dynamics within the milk.↵↵Understanding the traits of Enterococcus faecium strain DB-1 not only sheds light on its ecological role in dairy fermentation but also may provide insights into the metabolic pathways utilized by lactic acid bacteria in similar habitats, highlighting the importance of microbial interactions in food production systems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040874.1 Bac0000575 Enterococcus gallinarum "Enterococcus gallinarum is a mesophilic, facultative anaerobic, Gram-positive, coccus-shaped bacterium that thrives in temperatures ranging from 20°C to 45°C. It is a chemoheterotroph, obtaining its energy by breaking down organic compounds in the environment, rather than producing its own food like autotrophs. Enterococcus gallinarum uses fermentation as its primary energy production method, converting glucose into lactic acid. In terms of its Gram stain, E. gallinarum is a positive bacterium, meaning that it retains the Gram stain dye, indicating the presence of a thick peptidoglycan layer in its cell wall. Its coccus shape is spherical or oval in shape, ranging in size from 0.5 to 1.5 μm in diameter. Enterococcus gallinarum can be found on various body sites, including the human gut, skin, and respiratory tract. It is also found in animals, water, and soil. Its oxygen preference is facultative anaerobic, meaning it can grow in the presence or absence of oxygen, but prefers aerobic conditions. One of the most significant characteristics of E. gallinarum is its ability to produce a thick, gelatinous layer, known as a slime layer, on its surface. This layer helps protect the bacterium from harsh environmental conditions and antibiotics. Additionally, E. gallinarum is one of the most vancomycin-resistant Enterococcus species, making it challenging to treat infections caused by this microbe. Did you know that E. gallinarum is a significant component of the human gut microbiome, playing a crucial role in maintaining gut health and influencing the immune system? Its ability to adhere to epithelial cells and produce biologically active compounds also makes it a potential target for the development of probiotics and therapeutic agents." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gallinarum Positive Cocci Facultative anaerobe intestine; soil Animal 1353 UFYW00000000.1 Bac0000576 Enterococcus hirae "Enterococcus hirae is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in all body sites of various species, including humans, where it typically inhabits the gastrointestinal tract, and is a Facultative Anaerobe, capable of surviving in both aerobic and anaerobic environments. As a Gram-positive bacterium, E. hirae has a thick peptidoglycan cell wall that provides resistance to environmental stresses. Its spherical shape allows it to maintain a large surface area-to-volume ratio, facilitating the exchange of nutrients and waste products. The mesophilic temperature preference of E. hirae enables it to grow optimally at temperatures between 20-45°C, making it well-suited to inhabit the human body. As a Chemoheterotroph, E. hirae relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its metabolic processes. Its presence in all body sites, including the skin, mucous membranes, and gastrointestinal tract, highlights its adaptability and ability to colonize diverse environments. The facultative anaerobic nature of E. hirae allows it to thrive in various oxygen levels, from aerobic to anaerobic conditions, making it a resilient and opportunistic microbe. E. hirae has been implicated in certain infections, particularly in immunocompromised individuals, and has developed resistance to various antibiotics, posing a significant challenge to public health. The bacterium's ability to form biofilms and persist in healthcare settings has led to its recognition as a notable nosocomial pathogen, with ongoing research focused on understanding its virulence factors and developing effective treatment strategies." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus hirae Positive Cocci Facultative anaerobe bat guano; dust; feces; small intestines; soil; wastewater treatment plant; water Human 1354 SUMY00000000.1 Bac0000577 Lactococcus lactis str. CH_LC01 "Lactococcus lactis strain CH_LC01 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, thriving optimally at a temperature of 40.0°C. This microorganism is notable for its versatility, as it is found in multiple habitats, which may include dairy environments, where it plays a crucial role in fermentation processes.↵↵The spherical shape of L. lactis CH_LC01 is characteristic of its genus, which is known for its significance in the production of lactic acid and other metabolites during the fermentation of various substrates. The strain’s facultative anaerobic nature allows it to adapt to fluctuating oxygen levels, making it well-suited for diverse ecological niches, including both aerobic and anaerobic environments.↵↵Given its optimal growth temperature, L. lactis CH_LC01 may be particularly effective in thermophilic fermentation processes, contributing to improved efficiency in dairy applications or other biotechnological industries. The strain’s presence in multiple habitats suggests a potential for various biotechnological applications, including the development of starter cultures for fermented foods or as a probiotic agent. ↵↵Further investigations into the metabolic pathways and functional capabilities of L. lactis strain CH_LC01 could provide insights into its role within microbial communities and its utility in industrial fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human; Non-pathogenic 1358 SSHI00000000.1 Bac0000578 Lactococcus lactis "Lactococcus lactis is a gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites of numerous species, including the gastrointestinal tracts of animals and the mucous membranes of humans, and is typically a facultative anaerobe. As a gram-positive microbe, Lactococcus lactis has a thick peptidoglycan layer in its cell wall, providing it with resistance to certain environmental stresses. Its spherical shape allows it to maintain a stable structure and withstand various physical pressures. The mesophilic temperature preference of Lactococcus lactis enables it to grow optimally in temperatures ranging from 20°C to 30°C, making it well-suited for growth in dairy products and other fermented foods. As a chemoheterotroph, Lactococcus lactis relies on external sources of energy and organic compounds for growth, using enzymes to break down complex molecules into simpler ones. This ability to metabolize a wide range of substrates allows Lactococcus lactis to thrive in diverse environments, from the gastrointestinal tracts of animals to the surfaces of plants. The presence of Lactococcus lactis in various body sites of different species highlights its adaptability and ability to form symbiotic relationships with its hosts. Lactococcus lactis is commonly used in the production of fermented dairy products, such as cheese and butter, where it plays a crucial role in converting lactose into lactic acid, contributing to the characteristic flavors and textures of these products. Its ability to tolerate a wide range of salt concentrations and temperatures makes it an ideal microbe for use in food production. Additionally, Lactococcus lactis has been found to have potential health benefits, including the production of antimicrobial compounds and the ability to enhance the immune system, making it a subject of ongoing research in the fields of nutrition and health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human; Non-pathogenic 1358 MTJS00000000.1 Bac0000579 Lactococcus cremoris str. DPC6860 "Lactococcus cremoris str. DPC6860 is a Gram-positive, nonsporulating coccus that demonstrates facultative anaerobic growth, thriving optimally at a temperature of 40.0°C. This strain is part of a broader group of lactic acid bacteria, which are commonly found in various habitats, including dairy products and fermented foods. ↵↵Due to its coccoid shape and nonsporulating nature, L. cremoris str. DPC6860 is well-suited for environments where rapid fermentation is required. Its ability to grow under both aerobic and anaerobic conditions allows it to adapt to diverse ecological niches, making it a versatile microbe in food production and fermentation processes. ↵↵The optimal growth temperature of 40.0°C indicates a preference for warmer environments, suggesting that this strain may be particularly effective in applications such as cheese making or other dairy fermentations where elevated temperatures are employed. This adaptation may facilitate competitive advantages in these specific niches, potentially influencing the flavor profiles and textures of fermented products. ↵↵Overall, Lactococcus cremoris str. DPC6860 exemplifies the adaptability of lactic acid bacteria in diverse fermentation contexts, highlighting its importance in both traditional and industrial microbiological applications." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 LAVX00000000.1 Bac0000580 Lactococcus cremoris str. JM1 "Lactococcus cremoris strain JM1 is a Gram-positive, nonsporulating coccus that thrives optimally at 40.0°C and exhibits facultative anaerobic growth. This strain is part of a larger group of lactic acid bacteria known for their role in fermentation processes, particularly in dairy products. The spherical shape of L. cremoris JM1 contributes to its characteristic morphology, which is typical of the genus.↵↵Lactococcus species, including strain JM1, are commonly found in various habitats, particularly in dairy environments, where they play a crucial role in the production of cheese and other fermented dairy products. Their ability to grow under both aerobic and anaerobic conditions allows them to adapt to different ecological niches, enhancing their prevalence in diverse fermentation processes.↵↵The optimal growth temperature of 40.0°C suggests that L. cremoris JM1 may be well-suited for applications in food technology, where controlled fermentation temperatures are often employed to maximize microbial activity and product quality. This adaptability to fluctuating oxygen levels and optimal thermal conditions could provide insights into the strain's potential utility in biotechnological applications, particularly in the development of starter cultures for dairy fermentation. Understanding the ecological roles and metabolic capabilities of L. cremoris JM1 could lead to enhanced strategies for optimizing fermentation processes and improving product consistency in the dairy industry." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 NZ_CP015899.2 Bac0000581 Lactococcus cremoris str. JM3 "Lactococcus cremoris strain JM3 is a Gram-positive, non-sporulating coccus that thrives optimally at a temperature of 40.0°C. This strain is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments. While the specific habitats of Lactococcus cremoris str. JM3 are not detailed, the species is generally known to inhabit diverse environments, potentially including dairy products and fermented foods, where it plays a crucial role in lactic acid fermentation.↵↵The ability of L. cremoris to adapt to varying oxygen levels suggests a versatile metabolic capacity, which may facilitate its survival and activity in fluctuating conditions. This characteristic is particularly significant in food production, where anaerobic and aerobic conditions can vary during fermentation processes. Moreover, the optimal growth temperature of 40.0°C indicates that this strain may be well-suited for applications in industrial fermentation processes that require elevated temperatures, potentially enhancing the efficiency of dairy product production.↵↵Overall, Lactococcus cremoris str. JM3 exemplifies the adaptability and metabolic versatility characteristic of lactic acid bacteria, which are integral to the fermentation industry, contributing not only to flavor development but also to the preservation and safety of fermented products." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 NZ_CP016739.2 Bac0000582 Lactococcus cremoris str. JM4 "Lactococcus cremoris strain JM4 is a Gram-positive, nonsporulating coccus that thrives at an optimal temperature of 40.0°C and exhibits facultative anaerobic metabolic capabilities. This strain is part of a genus widely recognized for its role in dairy fermentation, particularly in the production of cheese and other fermented milk products. The ability to grow in diverse habitats suggests a versatile adaptability, allowing L. cremoris str. JM4 to occupy various ecological niches where it can contribute to microbial communities.↵↵As a facultative anaerobe, this strain can utilize both aerobic and anaerobic conditions for growth, which may enhance its survival and functioning in environments with fluctuating oxygen levels. This trait is particularly advantageous in dairy environments, where fermentation processes can create anaerobic conditions. The nonsporulating nature of L. cremoris str. JM4 indicates a reliance on vegetative growth, which is typical for many lactic acid bacteria and aligns with their role in food production and preservation.↵↵Overall, the combination of its Gram-positive status, coccoid shape, and metabolic flexibility underscores the ecological significance of Lactococcus cremoris str. JM4 in fermentation processes, as it may play a vital role in enhancing the flavor and preservation of dairy products while potentially influencing the microbial dynamics within its habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 NZ_CP016733.2 Bac0000583 Lactococcus cremoris "Lactococcus cremoris is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, thriving optimally at a temperature of 40.0°C. This bacterium is notable for its presence in various habitats, reflecting its versatile adaptability to different environmental conditions. ↵↵As a member of the lactic acid bacteria, L. cremoris plays a crucial role in dairy fermentation processes, where it is commonly utilized in the production of cheese and other fermented dairy products. Its ability to ferment lactose and produce lactic acid contributes to the preservation and flavor development in these products. ↵↵The facultative anaerobic nature of L. cremoris allows it to grow in both the presence and absence of oxygen, which is advantageous for its survival in diverse environments, from dairy processing facilities to natural ecosystems. This adaptability may also facilitate its utilization in various biotechnological applications, including probiotics and fermentation technologies. ↵↵In summary, L. cremoris exemplifies the ecological versatility of lactic acid bacteria, highlighting its significance not only in food production but also in potential applications in bioprocessing and environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 VERZ00000000.1 Bac0000584 Lactococcus lactis subsp. lactis str. 14B4 "Lactococcus lactis subsp. lactis str. 14B4 is a Gram-positive, nonsporulating coccus that thrives in various habitats, demonstrating its versatility as a facultative anaerobe. This strain exhibits optimal growth at a temperature of 40.0°C, indicating its preference for warmer environments, which may be reflective of its role in specific fermentation processes. ↵↵Lactococcus lactis is widely recognized for its application in dairy fermentation, particularly in the production of cheese and other fermented milk products. The facultative anaerobic nature of this organism allows it to adapt to both aerobic and anaerobic conditions, facilitating its survival and metabolic activity in diverse environments. This adaptability may contribute to its prevalence in various industrial fermentation settings, where oxygen levels can fluctuate.↵↵The ecological significance of Lactococcus lactis subsp. lactis str. 14B4 lies in its ability to participate in microbial communities involved in food processing, where it can interact with other microorganisms, potentially influencing the flavor, texture, and safety of fermented products. Further research may elucidate its specific interactions within these communities and its contributions to the overall dynamics of fermentation ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP028161.1 Bac0000585 Lactococcus lactis subsp. lactis str. 275 "Lactococcus lactis subsp. lactis str. 275 is a Gram-positive, nonsporulating cocci that thrives as a facultative anaerobe, exhibiting optimal growth at 40.0°C. This strain is part of a broader group of lactic acid bacteria, which are recognized for their role in dairy fermentation processes. L. lactis is commonly found in various habitats, particularly in fermented foods, and is vital for the production of cheese, buttermilk, and other dairy products.↵↵The nonsporulating nature of this strain suggests a reliance on favorable environmental conditions for survival and reproduction, as it does not form spores to withstand adverse situations. Its facultative anaerobic capability allows it to adapt to both aerobic and anaerobic environments, enhancing its ecological versatility and utility in food fermentation contexts.↵↵L. lactis subsp. lactis str. 275's ability to ferment lactose, a sugar found in milk, is integral to its role in dairy industries, as it contributes to the acidification and flavor development in fermented products. The optimal growth temperature of 40.0°C indicates a preference for warm environments, which aligns with the temperature conditions often found in dairy processing settings. ↵↵In summary, L. lactis subsp. lactis str. 275 exemplifies a crucial microorganism in food biotechnology, showcasing the intricate relationships between microbial traits and their applications in fermentation. Its adaptability to various habitats and conditions highlights the significance of this strain in both ecological and industrial microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP016701.1 Bac0000586 Lactococcus lactis subsp. lactis str. UC06 "Lactococcus lactis subsp. lactis str. UC06 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 40.0 °C, indicating its potential adaptability to warmer environments. L. lactis subsp. lactis is commonly found in diverse habitats, particularly in dairy products, where it plays a crucial role in fermentation processes.↵↵As a member of the Lactococcus genus, UC06 is likely to contribute to the production of lactic acid, which is a key metabolite in the fermentation of lactose and the preservation of food products. The facultative anaerobic nature of this strain suggests that it can grow in both the presence and absence of oxygen, providing versatility in various ecological niches. This trait is particularly advantageous in environments where oxygen levels may fluctuate.↵↵The ability of L. lactis subsp. lactis str. UC06 to thrive under these conditions not only enhances its utility in industrial fermentation but also underscores its potential role in microbial communities involved in food processing and preservation. Understanding the specific growth conditions and metabolic capabilities of this strain can help optimize its application in dairy fermentation and improve product quality." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP016736.2 Bac0000587 Lactococcus lactis subsp. lactis str. UC11 "Lactococcus lactis subsp. lactis str. UC11 is a Gram-positive, nonsporulating coccus that thrives in various habitats, exhibiting facultative anaerobic metabolism. This strain optimally grows at a temperature of 40.0°C, reflecting its adaptability to warmer environments. As a member of the Lactococcus genus, it is predominantly associated with dairy fermentation processes, where it plays a critical role in the production of cheese and other fermented dairy products.↵↵The facultative anaerobic nature of L. lactis subsp. lactis UC11 allows it to switch between aerobic and anaerobic respiration, providing it with a competitive advantage in diverse ecological niches where oxygen availability may fluctuate. This metabolic flexibility facilitates its survival and growth in both oxygen-rich and low-oxygen environments, which is essential for its application in various fermentation technologies. The strain’s ability to thrive at higher temperatures may also indicate its potential utility in industrial fermentation processes that require elevated thermal conditions.↵↵In summary, L. lactis subsp. lactis str. UC11 exemplifies the versatile nature of lactic acid bacteria, showcasing its importance in both ecological sustainability and biotechnological applications, particularly in the dairy industry where temperature and oxygen levels can vary significantly during production." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP034572.1 Bac0000588 Lactococcus lactis subsp. lactis "Lactococcus lactis subsp. lactis is a Gram-positive, nonsporulating coccus that thrives in a variety of habitats, demonstrating its adaptability to diverse environments. This bacterium exhibits facultative anaerobic metabolism, allowing it to grow in both the presence and absence of oxygen, which contributes to its ecological versatility. Optimal growth occurs at a temperature of 40.0°C, indicating a preference for warmer conditions, which may be relevant in specific niches such as dairy products, where it is commonly utilized in fermentation processes. ↵↵As a member of the lactic acid bacteria group, L. lactis subsp. lactis plays a significant role in the production of lactic acid, which can inhibit the growth of spoilage organisms and pathogens in food systems, thereby enhancing food preservation. This characteristic is particularly important in the dairy industry, where it is employed in the manufacture of cheese and other fermented milk products.↵↵The adaptability and metabolic flexibility of L. lactis subsp. lactis not only underscore its industrial relevance but also suggest its potential role in various microbiomes, contributing to microbial diversity and stability in environments where it is present. This versatility highlights the importance of understanding its ecological interactions, which may extend beyond traditional dairy fermentation contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 LKLH00000000.1 Bac0000589 Lactococcus lactis subsp. lactis str. JCM 5805 "Lactococcus lactis subsp. lactis str. JCM 5805 is a Gram-positive coccus that is classified as a nonsporulating, facultative anaerobe. This strain thrives optimally at a temperature of 40.0°C, indicating its potential adaptability to warm environments where it may play a role in various fermentation processes. ↵↵Lactococcus lactis subsp. lactis is well-known for its significance in the dairy industry, particularly in cheese and fermented milk production, where it contributes to flavor and texture development. The strain JCM 5805, possessing traits common to its subspecies, may exhibit similar functionality in fermentation, although specific metabolic capabilities are not detailed in the provided traits. ↵↵The habitat of this strain is categorized as multiple, suggesting a versatile presence across different environments, potentially including dairy products and other food matrices. This adaptability may enhance its utility in biotechnological applications, particularly in food fermentation and preservation. ↵↵The facultative anaerobic nature of Lactococcus lactis subsp. lactis str. JCM 5805 allows it to survive in both aerobic and anaerobic conditions, which may confer an ecological advantage in fluctuating environments. This trait is particularly relevant in food systems where oxygen levels can vary, ensuring the strain's persistence and functionality in diverse fermentation settings. Overall, the combination of these traits underscores the strain's potential significance in both industrial applications and natural ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 BBSI00000000.1 Bac0000590 Lactococcus lactis subsp. lactis str. W8 "Lactococcus lactis subsp. lactis str. W8 is a Gram-positive, nonsporulating cocci with a facultative anaerobic metabolic profile, thriving optimally at a temperature of 40.0°C. This strain is part of a diverse habitat range, suggesting its adaptability to various environments. As a member of the lactic acid bacteria group, L. lactis subsp. lactis str. W8 plays a significant role in dairy fermentation processes, contributing to the production of lactic acid and enhancing the flavor and texture of fermented products. ↵↵The facultative anaerobic nature of this strain allows it to grow in both aerobic and anaerobic conditions, providing flexibility in its metabolic pathways. This adaptability may confer advantages in varied ecological niches, facilitating its survival in environments where oxygen levels fluctuate. ↵↵Additionally, the nonsporulating characteristic indicates that L. lactis subsp. lactis str. W8 relies on other mechanisms for survival under unfavorable conditions. Its presence in multiple habitats highlights its ecological versatility, potentially contributing to the microbiota of fermented foods and influencing the fermentation dynamics in different substrates. Overall, the physiological traits of this strain underscore its significance in food microbiology and its role in dairy fermentation processes, while also hinting at its ecological potential in diverse microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 QYRO00000000.1 Bac0000591 Lactococcus lactis subsp. lactis str. WFLU12 "Lactococcus lactis subsp. lactis str. WFLU12 is a Gram-positive, nonsporulating coccus that demonstrates facultative anaerobic metabolism. This strain thrives optimally at a temperature of approximately 40.0°C, indicating its potential adaptability to warmer environments. Lactococcus lactis subsp. lactis, as a species, is predominantly found in various habitats, suggesting a versatile ecological presence that may include dairy products and plant materials, where it plays a significant role in fermentation processes.↵↵The facultative anaerobic nature of this strain allows it to survive and grow in both aerobic and anaerobic conditions, enhancing its ecological adaptability and usefulness in fermentation industries. Lactococcus lactis subsp. lactis str. WFLU12 may contribute to the flavor and texture development in fermented foods, owing to its metabolic capabilities. The ability to thrive in multiple habitats suggests that strains like WFLU12 could be harnessed for biotechnological applications, particularly in the dairy sector, where controlled fermentation processes are crucial for product quality. This versatility also underscores the potential for further exploration of its applications in food science and microbiology, particularly in the development of novel fermentation techniques and products." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 PKRZ00000000.1 Bac0000592 Lactococcus formosensis "Lactococcus formosensis is a Gram-positive cocci bacterium that exhibits facultative anaerobic metabolism. This species has been identified in diverse habitats, including fresh water, marine environments, and human stool samples. Its ability to thrive in varied ecological niches suggests a versatile adaptation to different nutrient availability and environmental conditions.↵↵As a member of the Lactococcus genus, L. formosensis may play a role in the fermentation processes typical of lactic acid bacteria, although specific fermentation capabilities and metabolic pathways have not been detailed in the available traits. The presence of this microbe in both aquatic systems and the gastrointestinal tract of humans indicates its potential involvement in biogeochemical cycles and human microbiota dynamics.↵↵The isolation of L. formosensis from distinct environments raises intriguing questions regarding its ecological functions. For instance, its presence in fresh and marine waters may indicate its role in the microbial communities that contribute to nutrient cycling in these ecosystems. Furthermore, its detection in human stool suggests a possible interaction with the gut microbiome, potentially influencing gut health or contributing to the overall microbial diversity. Overall, L. formosensis exemplifies the complex interplay between environmental factors and microbial life, highlighting the importance of studying such microorganisms to understand their ecological roles and contributions to their respective habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus formosensis Positive Cocci Facultative anaerobe Fresh water; Marine; stool 1363 NZ_AP017399.1 Bac0000593 Pseudolactococcus piscium "Pseudolactococcus piscium is a Gram-positive, non-sporulating bacterium characterized by its cocci shape and tendency to form chains. This microbe has been identified predominantly in specific habitats, notably in steak tartare and vacuum-packaged meats, suggesting a niche adaptation that enables it to thrive in environments with limited oxygen availability. ↵↵The presence of Pseudolactococcus piscium in these food products highlights its potential role in the microbiome of meat, where it may interact with other microbial populations. Given its non-sporulating nature, Pseudolactococcus piscium relies on its ability to grow under anaerobic conditions, which is typical for many lactic acid bacteria found in similar environments. ↵↵Moreover, the ecological implications of this organism extend to food preservation and safety, as its growth could influence the overall microbial dynamics within meat products, potentially affecting spoilage rates and flavor development. Understanding the characteristics and behaviors of Pseudolactococcus piscium can provide insights into the complexities of microbial interactions in food systems, particularly in meat fermentation and storage practices." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus piscium Positive Cocci No 1 steak tartare; vacuum-packaged meats Chains Nonsporulating 1364 FLZT00000000.1 Bac0000594 Lactococcus raffinolactis str. WiKim0068 "Lactococcus raffinolactis str. WiKim0068 is a Gram-positive coccus that is known to thrive in various fermented environments, including fermented cabbage, kimchi, and other fermented foods such as meat, milk, vegetables, and seeds. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which is beneficial for its survival in diverse fermentation processes.↵↵The unique morphology of L. raffinolactis, characterized by its spherical shape, contributes to its role in the fermentation of a wide array of substrates. Its presence in foods such as kimchi highlights its potential significance in traditional fermentation practices, wherein it may contribute to the development of flavor profiles and preservation of nutrients. ↵↵Moreover, the versatility of L. raffinolactis str. WiKim0068 in adapting to various habitats suggests potential applications in food biotechnology, particularly in the enhancement of fermented food products. Understanding the metabolic pathways and interactions of this strain within its ecological niches may provide insights into the development of novel fermentation strategies that leverage its unique traits for improved food quality and safety." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus raffinolactis Positive Cocci Facultative anaerobe fermented cabbage; fermented foods; fermented seeds; fish; kimchi; meat; milk; vegetables 1366 NZ_CP023394.1 Bac0000595 Pseudolactococcus raffinolactis "Pseudolactococcus raffinolactis is a Gram-positive coccus that thrives in a variety of fermented environments, including fermented cabbage, kimchi, and other fermented foods such as vegetables, fish, meat, and milk. This facultative anaerobe is capable of surviving both in the presence and absence of oxygen, which allows it to flourish in diverse fermentation conditions. ↵↵The presence of Pseudolactococcus raffinolactis in foods indicates its potential role in the fermentation process, where it may contribute to the development of flavor and preservation. Its adaptability to different substrates, notably those rich in carbohydrates, suggests that it may play a significant role in the microbial dynamics of fermented products. The ability of this microbe to inhabit a wide range of environments emphasizes its importance in the food industry, particularly in the production of traditional fermented goods.↵↵Additionally, the versatility of Pseudolactococcus raffinolactis in various fermentation scenarios hints at its potential utility in biotechnological applications, such as the development of probiotics or in enhancing the quality of fermented foods. This adaptability reflects broader ecological interactions and highlights the significance of microbial diversity in food fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus raffinolactis Positive Cocci Facultative anaerobe fermented cabbage; fermented foods; fermented seeds; fish; kimchi; meat; milk; vegetables 1366 JXJY00000000.1 Bac0000596 Planococcus citreus str. DSM 20549 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus citreus 1373 RCCP00000000.1 Bac0000597 Planococcus kocurii str. ATCC 43650 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus kocurii aquaculture water; soil 1374 NZ_CP013660.2 Bac0000598 Aerococcus mictus "Aerococcus mictus is a Gram-positive cocci that exhibits microaerophilic growth, indicating its ability to thrive in environments with reduced oxygen levels. This microorganism has been isolated from diverse habitats, including air, medical environments, soil, and urine, suggesting a versatile ecological niche and resilience in various conditions.↵↵The spherical shape of A. mictus is characteristic of the genus Aerococcus, which is known for its coccoid morphology. The presence of this bacterium in medical environments may point to its potential relevance in clinical microbiology, although the specific implications of its presence in such settings require careful consideration.↵↵Given its isolation from urine, A. mictus may play a role in the urinary microbiome, potentially influencing urinary health or contributing to the complexity of microbial communities in this habitat. The ability to survive in soil and air further indicates its adaptability and potential interactions with other microbial species and environmental factors.↵↵Understanding the ecological role of Aerococcus mictus could provide insights into its contribution to biogeochemical cycles, particularly in nutrient cycling within soil ecosystems. Further research is necessary to elucidate its interactions within microbial communities and its potential significance in both environmental and medical contexts." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus mictus positive Cocci microaerophilic air; medical environment; soil; urine 1376 QMHE00000000.2 Bac0000599 Aerococcus urinae "Aerococcus urinae is a Gram-positive coccus that exhibits microaerophilic growth, making it capable of thriving in environments with reduced oxygen levels. This microorganism is commonly found in diverse habitats, including air, medical environments, soil, and urine. Its presence in urine samples often draws attention in clinical settings, indicating potential relevance to human health.↵↵The coccoid shape of Aerococcus urinae contributes to its classification within the broader context of bacterial morphology and emphasizes its distinction from other bacterial forms. The microaerophilic nature of this organism allows it to occupy niches where oxygen is limited, which is particularly relevant in certain medical and environmental contexts. This adaptability suggests that Aerococcus urinae may play a role in the microbial dynamics of its respective habitats, particularly in environments where other bacterial species may be less competitive.↵↵Furthermore, its ability to inhabit both natural and human-associated environments hints at a potential ecological versatility, allowing it to participate in various biogeochemical cycles. The presence of Aerococcus urinae in urine, specifically, may also indicate its involvement in the complex interactions of the urinary microbiome, representing an area of interest for future research into microbial ecology and health. Thus, Aerococcus urinae exemplifies the intricate relationships that can exist between microorganisms and their environments, underscoring the importance of understanding microbial diversity in both natural and clinical contexts." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus urinae positive Cocci microaerophilic air; medical environment; soil; urine 1376 NZ_CP014161.1 Bac0000600 Aerococcus viridans "Aerococcus viridans is a mesophilic, chemoheterotrophic, Gram-positive cocci that typically appears in clusters and is predominantly found in the human throat and oral cavity, as well as in the respiratory and gastrointestinal tracts of various animals. This microbe thrives optimally at moderate temperatures, generally between 20-40°C, favoring environments rich in organic matter. As a chemoheterotroph, Aerococcus viridans derives its energy from organic compounds, utilizing sugars and other nutrients to generate adenosine triphosphate (ATP) through metabolic processes, primarily fermentation.The Gram stain characterizes Aerococcus viridans as Gram-positive due to its thick peptidoglycan cell wall, which retains the violet stain during the Gram staining process. This structural feature contributes to its resilience in certain environments. The cocci shape of Aerococcus viridans is distinct, often resembling small clusters or tetrads under microscopic examination, which is a characteristic feature of many Lactococcus family members. Regarding oxygen preference, Aerococcus viridans is classified as a facultative anaerobe, meaning it can grow in the presence or absence of oxygen but tends to favor aerobic conditions for growth. Its ability to adapt to various oxygen levels allows it to colonize diverse environments within the host. In terms of its ecological role, Aerococcus viridans is often recognized as part of the normal microbiota; however, it can be an opportunistic pathogen. In immunocompromised individuals, it is associated with various infections, including endocarditis and bacteremia, highlighting its dual nature as both a commensal organism and a potential threat. Additionally, its ability to ferment a range of carbohydrates makes it a subject of interest in biotechnology and fermentation studies, as it may contribute to unique metabolic profiles." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus viridans Positive Cocci Facultative anaerobe 1377 PNHQ00000000.1 Bac0000601 Bacillus amyloliquefaciens str. SRCM101267 "Bacillus amyloliquefaciens str. SRCM101267 is a Gram-positive, rod-shaped bacterium that exhibits the capability of sporulation and thrives in aerobic environments, primarily found in soil habitats. This species belongs to the genus Bacillus, which is known for its diverse metabolic capabilities and resilience in various environments, largely attributed to its ability to form spores. The sporulation process allows B. amyloliquefaciens to endure adverse conditions, such as nutrient depletion and environmental stressors, making it a vital player in soil ecology.↵↵In its natural habitat, B. amyloliquefaciens str. SRCM101267 may contribute to soil health through various mechanisms, including nutrient cycling and the potential promotion of plant growth, although specific interactions with other soil microorganisms or plants remain to be elucidated. The aerobic nature of this bacterium suggests its involvement in processes that require oxygen, which may include the degradation of organic matter or the production of metabolites beneficial to other soil organisms.↵↵Overall, the presence of B. amyloliquefaciens str. SRCM101267 in soil ecosystems may indicate its role in maintaining microbial diversity and supporting soil fertility, highlighting the importance of such microorganisms in ecological balance and agricultural sustainability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus amyloliquefaciens Positive Rod Yes 1 1 Aerobe Mesophilic Soil Free living Sporulating 1390 NZ_CP021506.1 Bac0000602 Bacillus anthracis "Bacillus anthracis is a Gram-positive, rod-shaped bacterium that thrives at mesophilic temperatures (20-45°C) and is classified as a chemoheterotroph, deriving energy from organic compounds while performing aerobic respiration along with some fermentation processes when necessary. This spore-forming microbe is found in various body sites and environments, prominently in soil and as a pathogen in animals and humans. As an obligate aerobe, B. anthracis requires oxygen for growth, making it a unique organism among its genus, which can include facultative anaerobes. Bacillus anthracis is the causative agent of anthrax, a serious infectious disease affecting livestock and, occasionally, humans, particularly in individuals who handle animal products. The bacterium possesses a complex life cycle that includes resilient spores capable of surviving extreme conditions for years. These spores can be inhaled, ingested, or enter through breaks in the skin, leading to severe symptoms depending on the route of exposure: cutaneous, gastrointestinal, or inhalational anthrax. The structure of B. anthracis is notable for its encapsulation, which plays a crucial role in evading the host's immune response. The protective capsule is composed of poly-D-glutamic acid, enhancing its virulence. Additionally, the bacterium produces potent toxins, including protective antigen, lethal factor, and edema factor, which disrupt cellular functions and induce profound immune responses. Bacillus anthracis has been the focus of extensive research, particularly concerning its potential use as a bioweapon due to its hardy spores and the severe consequences of infection. The bacterium's ability to form spores distinguishes it from many other pathogens, allowing it to remain dormant until conditions are favorable for growth, where it can quickly proliferate and pose significant health risks. Its role in historical outbreaks and its current status as a select agent underscores the importance of biosafety measures and public health awareness in managing this formidable microbe." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 LDPG00000000.1 Bac0000603 Bacillus cereus str. A22 "Bacillus cereus str. A22 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This microbe is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes. Optimal growth conditions for B. cereus str. A22 are observed at a temperature of 25.0 degrees Celsius, suggesting a preference for moderate environmental temperatures.↵↵Bacillus cereus strains are known to inhabit a variety of ecological niches, which may include soil, water, and plant materials. The ability to thrive in multiple habitats reflects a versatile metabolic capacity, allowing this strain to adapt to different environmental conditions. The rod shape and chain formation can be advantageous for biofilm development, which is often a critical factor in microbial survival and competition in various ecosystems.↵↵The ecological role of Bacillus cereus str. A22 may involve interactions within its habitat, potentially contributing to nutrient cycling or influencing microbial community dynamics. Its aerobe nature emphasizes the importance of oxygen in its ecological functions, suggesting that it might play a role in aerobic processes, such as the decomposition of organic matter, thus impacting soil health and fertility. Understanding the traits of B. cereus str. A22 can provide insights into its functional capabilities and ecological significance in its native environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP085499.1 Bac0000604 Bacillus cereus str. A24 "Bacillus cereus str. A24 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. It thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. This strain of Bacillus cereus can be found in multiple habitats, indicating its versatility and adaptability to various ecological niches. ↵↵As a member of the Bacillus genus, B. cereus str. A24 may possess the ability to form endospores, a trait commonly associated with this group, which allows it to survive adverse conditions. The aerobic nature of this strain implies a reliance on oxygen for growth and metabolism, further influencing its distribution in environments where oxygen is readily available.↵↵The ecological insight provided by the habitat versatility of Bacillus cereus str. A24 highlights its potential role in nutrient cycling and soil health, as members of the Bacillus genus are often involved in processes such as the decomposition of organic matter and the promotion of plant growth. This adaptability may also facilitate interactions with other microbial communities, contributing to the dynamic balance of ecosystems where it is found." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP085503.1 Bac0000605 Bacillus cereus str. A31 "Bacillus cereus str. A31 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for moderate environmental temperatures. ↵↵Bacillus cereus is known for its versatility in habitat, indicating its ability to colonize a variety of environments, which may contribute to its ecological resilience. This adaptability is a common trait among members of the Bacillus genus, allowing them to occupy diverse niches, including soil, food, and various organic substrates. The formation of chains may provide advantages in certain environments, such as enhanced survival during nutrient-limited conditions or increased resistance to predation.↵↵The aerobic nature of Bacillus cereus str. A31 suggests a reliance on oxygen for metabolic processes, which could influence its ecological distribution and interactions with other microorganisms in its habitat. The ability to thrive in various environments while maintaining a specific temperature preference highlights the ecological adaptability of this strain, allowing it to participate in various biological processes, including nutrient cycling and decomposition. ↵↵Overall, Bacillus cereus str. A31 exemplifies the ecological capabilities of its species, reflecting the broader environmental adaptability of Bacillus bacteria in diverse ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 VEPT00000000.1 Bac0000606 Bacillus cereus str. ZB201708 "Bacillus cereus str. ZB201708 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain is optimally active at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. B. cereus is known to inhabit diverse habitats, suggesting a versatile ecological adaptability that could facilitate its survival in various environments, ranging from soil to plant surfaces.↵↵The rod shape and chain arrangement are characteristic of the Bacillus genus, which is known for its ability to form endospores, although spore formation is not specified for this strain. The aerobic nature of B. cereus str. ZB201708 implies that it requires oxygen for growth and metabolism, which may influence its ecological niches and interactions with other microbial communities in its habitat.↵↵Given its adaptability to multiple environments and preference for moderate temperatures, B. cereus str. ZB201708 could play a significant role in nutrient cycling and the decomposition of organic matter, contributing to soil health and ecosystem functioning. Further studies on its metabolic pathways and interactions with other microorganisms could reveal more about its ecological contributions and potential applications in biotechnology or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP030982.1 Bac0000607 Bacillus tropicus "Bacillus tropicus is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and is classified as an aerobic organism, requiring oxygen for its metabolic processes. This species thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. ↵↵Bacillus tropicus has been found in multiple habitats, which may indicate its adaptability to diverse ecological niches. The ability to form chains may contribute to its survival in various environments, potentially enhancing its ability to withstand unfavorable conditions through collective behavior.↵↵The ecological versatility of Bacillus tropicus may play a significant role in its interactions within microbial communities, particularly in environments where it can exploit organic matter. Its aerobic metabolism positions it as a potential competitor with other microorganisms in oxygen-rich habitats, influencing community dynamics and nutrient cycling. This adaptability underscores the importance of Bacillus tropicus in various ecosystems where it may contribute to processes such as organic matter decomposition and soil health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus tropicus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP020938.1 Bac0000608 Bacillus wiedmannii "Bacillus wiedmannii is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This species thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. It has been isolated from a variety of habitats, reflecting its ecological adaptability.↵↵The characteristic chain formation of Bacillus wiedmannii may enhance its survival in diverse environments by increasing the efficiency of nutrient uptake and facilitating cooperative interactions among cells. As an aerobe, this microbe relies on oxygen for its metabolic processes, which may influence its distribution in habitats with varying oxygen availability. ↵↵The presence of Bacillus wiedmannii in multiple habitats suggests its potential role in various biogeochemical cycles, although specific ecological functions remain to be elucidated. The adaptability of this species to differing environments may be indicative of its evolutionary strategies, allowing it to exploit a range of ecological niches. Further research into its ecological interactions could provide insights into its functional contributions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 FMBE00000000.1 Bac0000609 Bacillus cereus "Bacillus cereus is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites of all possible species, including the gastrointestinal tract, respiratory tract, and skin, and is a facultative anaerobe. As a gram-positive microbe, Bacillus cereus has a thick peptidoglycan layer in its cell wall, which provides it with a strong resistance to environmental stresses. Its rod shape allows it to move and colonize efficiently in different environments. The mesophilic temperature preference of Bacillus cereus enables it to grow optimally in temperatures ranging from 20-40°C, making it a common inhabitant of soil, water, and human environments. As a chemoheterotroph, Bacillus cereus relies on organic compounds for energy and carbon, which it obtains from its surroundings. Its ability to inhabit all possible body sites makes it a ubiquitous microbe, capable of adapting to different environments and hosts. Additionally, as a facultative anaerobe, Bacillus cereus can survive in both aerobic and anaerobic conditions, allowing it to thrive in a wide range of ecosystems. Bacillus cereus is known to produce toxins that can cause food poisoning, and its ability to form biofilms and spores makes it highly resistant to heat, desiccation, and chemical disinfectants, allowing it to persist in environments where other microbes would be killed, and its spores can survive for long periods in a dormant state, making it a significant concern in food safety and public health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LABL00000000.1 Bac0000610 Bacillus cereus str. 6113 "Bacillus cereus str. 6113 is a Gram-positive, rod-shaped bacterium that typically forms chains and demonstrates optimal growth at a temperature of 25.0°C. This strain is classified as an aerobe, indicating its requirement for oxygen in the metabolic processes necessary for growth and energy production. ↵↵The habitat of Bacillus cereus str. 6113 is diverse and encompasses multiple environments, suggesting a broad ecological niche. This adaptability may facilitate its survival in various conditions, reflecting the organism's ecological versatility. The formation of chains in its cellular arrangement can influence its interaction with other microorganisms and its ability to colonize different substrates.↵↵Understanding the growth characteristics and environmental preferences of Bacillus cereus str. 6113 contributes to the broader knowledge of its role in microbial communities. The strain's ability to thrive in aerobic environments at moderate temperatures may be indicative of its potential involvement in the decomposition processes in soil or other organic materials, highlighting its importance in nutrient cycling within ecosystems. Further investigation into its ecological roles may reveal insights into its interactions with other microbes and its contributions to microbial diversity." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NJNO00000000.1 Bac0000611 Bacillus cereus str. BCE-01 "Bacillus cereus str. BCE-01 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. B. cereus species, including BCE-01, are known to inhabit diverse environments, suggesting a versatile ecological niche.↵↵The ability of B. cereus str. BCE-01 to grow in aerobic conditions allows it to utilize oxygen for metabolic processes, enhancing its adaptability to various habitats. The formation of chains may facilitate its survival and colonization in specific environments by increasing the surface area for nutrient absorption and promoting biofilm formation, which can confer advantages in competitive ecosystems.↵↵Further studies on B. cereus str. BCE-01 could provide insights into its metabolic pathways and ecological roles, particularly in nutrient cycling and interactions with other microorganisms within its habitats. Understanding these interactions may reveal the strain's contributions to ecosystem dynamics, underscoring the importance of microbial diversity in maintaining environmental balance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 MVPV00000000.1 Bac0000612 Bacillus cereus str. CITVM-11.1 "Bacillus cereus str. CITVM-11.1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives optimally at a temperature of 25.0°C. This strain exhibits an aerobic metabolism, indicating that it requires oxygen for growth and energy production. Found in diverse habitats, B. cereus str. CITVM-11.1's ability to survive in various environments highlights its ecological versatility. ↵↵The rod shape and chain arrangement of this bacterium are characteristic of the Bacillus genus, which is known for its ability to form endospores, although specific spore-forming traits are not provided here. The preference for an optimal growth temperature of 25.0°C suggests that this strain may be well-suited for environments that are moderate in temperature, potentially including soil, water, and decaying organic matter.↵↵Bacillus cereus, in general, is recognized for its role in nutrient cycling and may contribute to soil health and fertility. The ecological role of strain CITVM-11.1 may further involve interactions with other microorganisms within its habitat, potentially influencing microbial community dynamics and nutrient availability. This adaptability to multiple habitats underscores the importance of Bacillus species in various ecological contexts, including their potential utility in bioremediation or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 MVFX00000000.1 Bac0000613 Bacillus cereus str. DSM 2302 "Bacillus cereus str. DSM 2302 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives optimally at a temperature of 25.0°C. This organism is categorized as an aerobe, indicating its reliance on oxygen for growth and metabolism. ↵↵Bacillus cereus is known to inhabit diverse environments, reflecting its adaptability to multiple habitats. Such versatility may be attributed to its ability to form endospores, a trait common to the Bacillus genus, which enables survival in harsh conditions. The formation of chains during cell division suggests a unique mode of growth that may influence its ecological interactions and nutrient acquisition strategies.↵↵The optimal growth temperature of 25.0°C positions Bacillus cereus str. DSM 2302 within a range typical of many environmental microorganisms, suggesting its potential role in various biogeochemical processes in temperate ecosystems. Its aerobic nature may allow it to participate in aerobic respiration, thus contributing to the cycling of carbon and other nutrients in its habitat. These characteristics highlight the ecological significance of Bacillus cereus str. DSM 2302 in maintaining microbial diversity and function in its environment." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LQZO00000000.1 Bac0000614 Bacillus cereus str. HN001 "Bacillus cereus strain HN001 is a Gram-positive, rod-shaped bacterium that typically occurs in chains and demonstrates aerobic metabolic capabilities. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵Bacillus cereus is known for its adaptability to diverse habitats, which likely contributes to its widespread presence in various ecological niches. As a member of the Bacillus genus, this strain is part of a larger group of bacteria that are characterized by their ability to form endospores, although specific information on sporulation is not provided here. The aerobic nature of Bacillus cereus str. HN001 suggests it requires oxygen for growth, which can influence its distribution in environments where oxygen is available.↵↵The ecological implications of Bacillus cereus str. HN001’s traits may include its role in nutrient cycling and its potential interactions with other microorganisms in its habitat. Its ability to thrive in various environments underscores its ecological flexibility, which may allow it to play significant roles in different biogeochemical processes. Understanding the specific adaptations and interactions of this strain within its habitats could provide valuable insights into its ecological functions and potential applications in biotechnology or environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP011156.1 Bac0000615 Bacillus cereus str. MLY1 "Bacillus cereus str. MLY1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in a variety of habitats, indicating its ecological versatility. This strain is classified as an aerobe, requiring oxygen for optimal growth, and it is best adapted to an environmental temperature of 25.0°C. ↵↵Bacillus cereus species are known for their ability to survive in diverse conditions, which may be attributed to their robust spore-forming capabilities. This adaptability allows them to occupy multiple ecological niches, contributing to their presence in soil and various organic materials. The chain formation characteristic of strain MLY1 may influence its interaction with other microorganisms in its habitat, potentially affecting community dynamics and nutrient cycling. ↵↵The environmental resilience and growth conditions of Bacillus cereus str. MLY1 offer insights into its role in biogeochemical processes, particularly in temperate climates where it can contribute to the breakdown of organic matter. Understanding the traits of this strain can enhance our knowledge of the ecological functions of Bacillus species in their native environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP024658.1 Bac0000616 Weizmannia coagulans "Weizmannia coagulans is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive as a chemoheterotroph. This microbe exhibits an optimal growth temperature of 60.0°C, indicating a preference for thermophilic conditions. As a facultative anaerobe, W. coagulans can adapt to varying oxygen levels, allowing it to inhabit diverse environments.↵↵The ability to sporulate suggests that W. coagulans has evolved mechanisms to withstand adverse conditions, which may contribute to its survival in multiple habitats. This trait is particularly advantageous in high-temperature environments, where it can exploit organic substrates for energy. Given its chemoheterotrophic lifestyle, W. coagulans likely plays a role in the degradation of organic materials, contributing to nutrient cycling in its habitats.↵↵The presence of W. coagulans in environments characterized by elevated temperatures may indicate its potential utility in industrial applications, particularly in processes requiring heat-stable enzymes such as those involved in biofuel production or waste treatment. The unique combination of traits exhibited by this bacterium positions it as a notable organism within thermophilic microbial communities, where its metabolic capabilities may enhance ecological interactions and biogeochemical processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia coagulans Positive Rod Yes 1 Facultative anaerobe 60 Chemoheterotroph Mesophilic Multiple Sporulating Non-pathogenic 1398 LQYH00000000.1 Bac0000617 Weizmannia coagulans str. GED7749B "Weizmannia coagulans str. GED7749B is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive as a chemoheterotroph, utilizing various organic compounds as energy sources. This strain exhibits optimal growth at a temperature of 60.0°C, suggesting an adaptation to moderately thermophilic environments. As a facultative anaerobe, W. coagulans str. GED7749B can grow in the presence or absence of oxygen, enabling it to occupy diverse habitats that may fluctuate between aerobic and anaerobic conditions.↵↵The ability to sporulate is a significant trait, allowing W. coagulans str. GED7749B to withstand unfavorable environmental conditions and contribute to its resilience in various ecological niches. The presence of this bacterium in multiple habitats indicates its potential ecological versatility, possibly playing a role in nutrient cycling in thermophilic environments. Given its characteristics, W. coagulans str. GED7749B may participate in biogeochemical processes, such as the decomposition of organic matter at elevated temperatures, thereby influencing the microbial community dynamics within its habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia coagulans Positive Rod Yes 1 Facultative anaerobe 60 Chemoheterotroph Mesophilic Multiple Sporulating Non-pathogenic 1398 LRPN00000000.1 Bac0000618 Cytobacillus firmus str. 14_TX "Cytobacillus firmus strain 14_TX is a rod-shaped, nonsporulating bacterium that thrives optimally at a temperature of 35.0°C and utilizes a chemoheterotrophic lifestyle for energy acquisition. This organism exhibits a diverse habitat range, suggesting its adaptability to various environmental conditions. The inability to form spores may indicate a reliance on specific ecological niches for survival and reproduction, potentially influencing its resilience in fluctuating environments.↵↵The characteristic rod shape of Cytobacillus firmus str. 14_TX may contribute to its motility and nutrient absorption efficiency, which are crucial for its survival as a chemoheterotroph. By employing organic compounds as energy sources, this microbe plays a role in the decomposition processes within its habitat, possibly influencing nutrient cycling and availability for other microorganisms. ↵↵The adaptability of Cytobacillus firmus str. 14_TX to multiple habitats underscores the importance of environmental factors in shaping microbial communities. Understanding the metabolic capabilities and ecological roles of such organisms can provide insights into their contributions to ecosystem dynamics, particularly in environments where organic matter turnover is essential for sustaining biodiversity." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus firmus Rod No 1 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 1399 QNSF00000000.1 Bac0000619 Cytobacillus firmus str. LK28 "Cytobacillus firmus strain LK28 is a rod-shaped, nonsporulating bacterium that exhibits chemoheterotrophic metabolism, utilizing organic compounds as its energy source. This organism thrives optimally at a temperature of 35.0°C, suggesting a preference for mesophilic conditions that are commonly found in various environments.↵↵The habitat of Cytobacillus firmus str. LK28 is noted to be diverse, indicating its potential adaptability to multiple ecological niches. Its nonsporulating nature may reflect its reliance on stable environmental conditions for growth and survival, as opposed to sporulating bacteria, which often employ spores as a strategy for enduring hostile environments.↵↵The metabolic capabilities of C. firmus LK28 as a chemoheterotroph suggest its role in nutrient cycling within its habitats, as it likely contributes to the breakdown of organic matter. This functional trait could position it as an important player in microbial communities, where it may interact with other microorganisms, influencing the dynamics of nutrient availability and ecosystem health. Further exploration into its ecological interactions could unveil deeper insights into its role within specific microbiomes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus firmus Rod No 1 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 1399 LDWQ00000000.1 Bac0000620 Paenibacillus lautus str. E7593-69 "Paenibacillus lautus str. E7593-69 is a Gram-positive, rod-shaped bacterium predominantly found in soil environments. This strain exhibits typical characteristics of the Paenibacillus genus, which is often associated with various ecological functions within terrestrial ecosystems. The Gram-positive nature of P. lautus suggests a robust cell wall structure, likely contributing to its resilience in diverse soil conditions.↵↵The rod shape of P. lautus str. E7593-69 is significant, as it may influence the microbe's motility and ability to colonize soil particles, which are critical for its ecological interactions. Being a soil-dwelling microbe, this strain may play a role in nutrient cycling, organic matter decomposition, and potentially in plant-microbe interactions, although specific interactions and functional roles have not been detailed.↵↵Interestingly, the presence of Paenibacillus species in soil ecosystems underscores the importance of these bacteria in maintaining soil health and fertility. Their metabolic capabilities may contribute to the breakdown of complex organic materials, thereby enhancing soil structure and nutrient availability for plants. Further exploration of P. lautus str. E7593-69's ecological role could provide insights into its potential applications in sustainable agriculture and soil management practices." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus lautus positive Rod soil 1401 NZ_CP032412.1 Bac0000621 Paenibacillus lautus "Paenibacillus lautus is a Gram-positive, rod-shaped bacterium predominantly found in soil environments. This microorganism is part of the diverse Paenibacillus genus, known for its ability to thrive in various terrestrial habitats. The rod shape of P. lautus is characteristic of many members within the Bacilli class, which typically exhibit a high degree of morphological diversity.↵↵As a soil-dwelling microbe, P. lautus plays a crucial role in the soil ecosystem, potentially contributing to nutrient cycling and soil health. The presence of such bacteria in soil is often indicative of the microbial diversity that supports plant growth and overall soil fertility. Although specific metabolic pathways and interactions with other organisms are not detailed, the ecological role of Paenibacillus species generally encompasses participation in organic matter decomposition and possible plant growth promotion.↵↵In summary, the characteristics of Paenibacillus lautus, including its Gram-positive nature and rod shape, suggest it is well-adapted to a soil habitat, where it may contribute to essential ecological functions. The study of P. lautus and its interactions within the soil microbiome can provide insights into the complexities of soil ecology and the importance of microbial communities in sustaining healthy ecosystems." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus lautus positive Rod soil 1401 MRTF00000000.1 Bac0000622 Bacillus licheniformis "Bacillus licheniformis is a gram-positive, rod-shaped bacterium that thrives in a wide range of environments. As a mesophile, it prefers temperatures between 25°C and 45°C, making it most active in moderate temperatures. Its metabolism is chemoheterotrophic, meaning it obtains energy by breaking down organic compounds in the presence of oxygen. This energy is produced through the process of aerobic respiration, where glucose is converted into ATP. The Gram stain reaction of Bacillus licheniformis is positive, indicating the presence of a thick peptidoglycan layer in its cell wall. Its rod-shaped morphology allows it to move about efficiently, using its flagella to propel itself through its surroundings. Bacillus licheniformis is a ubiquitous microbe, capable of colonizing various body sites in all possible species, including the skin, respiratory tract, gastrointestinal tract, and genitourinary tract. Its ability to adapt to different environments is further underscored by its oxygen preference, as it is an obligate aerobe, requiring the presence of oxygen to survive. In addition to its ecological versatility, Bacillus licheniformis has been extensively studied for its potential applications in various fields. For instance, its enzymes have been exploited in the production of biofuels, detergents, and pharmaceuticals. Notably, the enzyme lipase produced by B. licheniformis has been used in the production of biodiesel, making it a promising alternative to fossil fuels. Furthermore, research has shown that B. licheniformis has the ability to produce antifungal compounds, which could potentially be used as natural pesticides or antibiotics. Its unique characteristics and adaptability have solidified Bacillus licheniformis as a valuable microbe in modern biotechnology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus licheniformis Positive Rod Yes 1 1 Facultative aerobe Mesophilic HostAssociated Free living Sporulating Human 1402 QROJ00000000.1 Bac0000623 Priestia megaterium str. MRML4 "Priestia megaterium strain MRML4 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in aerobic environments. This organism is capable of surviving in diverse habitats, which suggests a degree of ecological versatility. The ability to form spores is particularly notable, as this trait enables P. megaterium MRML4 to withstand unfavorable conditions, contributing to its persistence in various ecological niches.↵↵In addition to its morphological and physiological characteristics, the aerobe nature of P. megaterium MRML4 indicates that it relies on oxygen for its metabolic processes, positioning it within environments rich in oxygen. This trait may facilitate its role in nutrient cycling, particularly in aerobic ecosystems.↵↵The ecological adaptability of P. megaterium MRML4, combined with its sporulation ability, may allow it to play a significant role in soil health and the degradation of organic materials. Its sporulation could also be a response to environmental stressors, ensuring survival during periods of nutrient scarcity or adverse conditions. Further exploration of this strain could reveal insights into its potential applications in biotechnology, particularly in bioremediation or agricultural contexts, underscoring the ecological importance of this microorganism." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 MRUF00000000.1 Bac0000624 Priestia megaterium str. S1 "Priestia megaterium str. S1 is a Gram-positive, sporulating rod bacterium that thrives in diverse habitats and exhibits an aerobic metabolism. This strain, characterized by its robust cellular structure, is capable of forming spores under specific environmental conditions, which facilitates its survival in varying ecological niches. The rod shape of P. megaterium str. S1 is indicative of its cellular morphology, which can play a role in its motility and interaction with its environment.↵↵As an aerobe, P. megaterium str. S1 requires oxygen for its metabolic processes, which positions it within ecosystems rich in oxygen availability. Its ability to sporulate not only aids in resilience against unfavorable conditions but may also contribute to its dispersal across different substrates and environments. The presence of this microorganism in multiple habitats suggests a level of adaptability that could be advantageous for biogeochemical cycling or in biotechnological applications.↵↵Overall, the traits of Priestia megaterium str. S1 reflect its potential role in various ecological contexts, particularly in environments where its aerobic metabolism and sporulation capabilities could enhance nutrient cycling and the breakdown of organic materials. This adaptability underscores the importance of understanding microbial diversity and function in ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 SUPM00000000.1 Bac0000625 Priestia megaterium str. SR7 "Priestia megaterium strain SR7 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to survive in a variety of environmental conditions. As an aerobic organism, P. megaterium str. SR7 requires oxygen for its metabolic processes, positioning it within ecosystems where oxygen is readily available. Its capability for sporulation suggests an adaptation to fluctuating environmental stresses, enabling the bacterium to endure unfavorable conditions and potentially facilitating its presence in diverse habitats.↵↵This strain is part of a broader group that thrives in multiple environments, indicating a versatile ecological role. The ability to form spores may not only enhance its resilience but also contribute to nutrient cycling in its surroundings. Insights into its sporulation mechanisms and metabolic pathways could further elucidate its interactions within microbial communities and its potential applications in biotechnology, such as in bioremediation or the production of bioactive compounds. The ecological implications of its adaptability highlight the potential for P. megaterium str. SR7 to influence microbial diversity and function in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 NZ_CP022675.1 Bac0000626 Priestia megaterium "Clostridium symbiosum is a fascinating microbe that belongs to the genus Clostridium, a group of gram-positive, anaerobic bacteria. This microbe has the following characteristics: it has a temperature preference of mesophilic, meaning it thrives in moderate temperatures between 20-45°C. Additionally, it is a heterotroph, obtaining its energy by breaking down organic compounds, specifically glucose, in the presence of oxygen. In terms of energy production, Clostridium symbiosum is an anaerobe, meaning it produces energy in the absence of oxygen. It generates energy through fermentation, a process in which the microbe converts glucose into lactic acid. The microbe's gram stain is positive, indicating that its cell wall contains peptidoglycan, a thick layer of sugars and amino acids. The cell shape is typically rod-shaped, or bacillary, with a length of approximately 1-3 micrometers. Clostridium symbiosum is found in the gastrointestinal tract of certain insects, such as the beetle family, and has been isolated from the gut of the beetle species, Phalacrus subtilis. It colonizes the intestine of these insects, where it plays a crucial role in breaking down complex nutrients and releasing nutrients that the insect can utilize. This microbe has an obligate anaerobic lifestyle, meaning it requires an oxygen-free environment to survive. In fact, exposure to even low levels of oxygen can be lethal to Clostridium symbiosum. In conclusion, Clostridium symbiosum is a unique microbe that has adapted to thrive in the anaerobic environment of the gut of certain insects. Its ability to break down complex nutrients and release essential nutrients has made it an important symbiont in the ecosystem of its host insects. Clostridium symbiosum's unique characteristics have also provided valuable insights into the evolution of anaerobic metabolism and the interactions between microbes and their hosts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 NTUU00000000.1 Bac0000627 Priestia megaterium str. YC4-R4 "Priestia megaterium str. YC4-R4 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and requires oxygen for growth, classifying it as an aerobic organism. This strain thrives in diverse habitats, indicating its ecological versatility and adaptability to varying environmental conditions. ↵↵As a sporulating bacterium, Priestia megaterium str. YC4-R4 can form spores, which are resistant structures that enable it to survive adverse conditions, such as nutrient scarcity or extreme temperatures. This ability to sporulate is a significant survival strategy that allows this microbe to endure in multiple habitats, potentially aiding in its dispersal and colonization of new environments. ↵↵The aerobic nature of this strain suggests that it plays a role in environments where oxygen is available, possibly contributing to biogeochemical cycles by participating in organic matter decomposition or nutrient cycling. The combination of its Gram-positive cell wall structure and sporulation capacity may also provide insights into its metabolic capabilities and interactions within microbial communities. Overall, Priestia megaterium str. YC4-R4 exemplifies the resilience and adaptability of bacteria in various ecological niches, reflecting the complex interplay of microbial life in sustaining ecosystem health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 NZ_CP026736.1 Bac0000628 Bacillus mycoides str. DB-1 "Bacillus mycoides strain DB-1 is a Gram-positive, rod-shaped bacterium that has been isolated from the deep sea, specifically from the Iheya Ridge hydrothermal vent field in the Okinawa Trough. As a facultative anaerobe, this microbe is capable of surviving in both aerobic and anaerobic environments, which may confer an ecological advantage in the extreme conditions typically found at hydrothermal vents, where oxygen levels can fluctuate significantly. ↵↵The habitat of Bacillus mycoides str. DB-1 suggests its potential involvement in biogeochemical cycles within deep-sea ecosystems, as hydrothermal vents are known to host unique microbial communities that contribute to nutrient cycling under high-pressure and high-temperature conditions. The ability of this strain to thrive in such an environment may indicate its adaptation to utilize diverse energy sources available in the vent ecosystem. Further research into the metabolic pathways and ecological roles of Bacillus mycoides str. DB-1 could provide insights into the microbial dynamics of extreme habitats and their contributions to the overall health and functioning of deep-sea environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 QTTY00000000.1 Bac0000629 Bacillus mycoides str. Gnyt1 "Bacillus mycoides str. Gnyt1 is a Gram-positive, rod-shaped bacterium identified in the deep-sea environment of the Iheya Ridge hydrothermal vent field in the Okinawa Trough. As a facultative anaerobe, this microbe exhibits the ability to thrive in both aerobic and anaerobic conditions, suggesting a versatile metabolic capacity that may be advantageous in the fluctuating conditions often encountered in deep-sea habitats.↵↵The unique hydrothermal vent ecosystem provides a distinct environment characterized by extreme temperature gradients and rich mineral deposits, which may influence the physiological adaptations of B. mycoides str. Gnyt1. This bacterium's ability to utilize diverse energy sources in the presence or absence of oxygen could play a significant role in nutrient cycling within its habitat, potentially contributing to the overall microbial community dynamics of hydrothermal vent ecosystems. ↵↵Understanding the metabolic pathways and ecological roles of B. mycoides str. Gnyt1 could provide valuable insights into the survival strategies of microorganisms in extreme environments and their contributions to biogeochemical processes in the ocean." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 NZ_CP020747.1 Bac0000630 Bacillus mycoides str. GOE8 "Bacillus mycoides str. GOE8 is a Gram-positive, rod-shaped bacterium that thrives in the deep-sea environment of the Iheya Ridge hydrothermal vent field in the Okinawa Trough. This strain exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen levels within its extreme habitat. The presence of hydrothermal vents provides a unique ecological niche, where B. mycoides str. GOE8 may engage in complex interactions with other microbial communities, contributing to biogeochemical cycles in these oligotrophic conditions.↵↵The adaptation of B. mycoides str. GOE8 to a hydrothermal environment suggests potential metabolic versatility, which may include the utilization of organic compounds produced by surrounding organisms or through chemosynthetic processes associated with vent activity. The study of this strain may provide insights into microbial life at extreme depths and the evolutionary mechanisms that allow for survival in such harsh conditions. Understanding the role of B. mycoides str. GOE8 in its ecosystem could further illuminate the dynamics of microbial life in deep-sea habitats and their contributions to nutrient cycling in these relatively unexplored environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 LXLT00000000.1 Bac0000631 Bacillus mycoides "Bacillus mycoides is a gram-positive, rod-shaped bacterium that thrives in a variety of environments. It is classified as a thermophilic organism, preferring temperatures between 50-60°C, which is characteristic of its ability to survive in hot and humid environments. Moreover, it is a heterotroph, obtaining its energy from the breakdown of organic compounds. Specifically, it produces energy through the process of oxidation-reduction, utilizing enzymes to catalyze the conversion of substrates into ATP. Bacillus mycoides is typically Gram-stained, meaning it retains the crystal violet dye, indicating the presence of a thick peptidoglycan layer in its cell wall. Its rod-shaped morphology allows it to adapt to a wide range of ecological niches, including soil, water, and decomposing organic matter. This microbe has been found in various body sites across different species, including the human gut, where it plays a crucial role in decomposition and nutrient cycling. In terms of its oxygen preference, Bacillus mycoides is a facultative anaerobe, capable of surviving in both aerobic and anaerobic conditions. This adaptability is likely a result of its ability to produce enzymes that can function in a variety of oxygen environments. One of the most striking features of Bacillus mycoides is its ability to produce a range of enzymes, including proteases, lipases, and amylases, which enable it to break down complex organic compounds. This enzymatic activity allows it to thrive in environments with limited nutrients, making it a key player in the decomposition process. In addition to its ecological significance, Bacillus mycoides has potential applications in biotechnology, particularly in the production of bioactive compounds and enzymes. Further research into this microbe's physiology and enzymatic capabilities may lead to the development of novel bioproducts and biocatalysts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 MUAS00000000.1 Bac0000632 Bacillus mycoides str. AH603 "Bacillus mycoides str. AH603 is a Gram-positive, rod-shaped bacterium identified in the deep-sea hydrothermal vent field of the Iheya Ridge in the Okinawa Trough. This microbe exhibits facultative anaerobic respiration, allowing it to thrive in both oxygen-rich and oxygen-poor environments, a trait that is particularly advantageous in the dynamic conditions of hydrothermal vent ecosystems. ↵↵The habitat of Bacillus mycoides str. AH603 suggests its potential role in biogeochemical cycling in deep-sea environments, particularly in the unique chemical milieu associated with hydrothermal activity. Its isolation from such extreme habitats may indicate adaptations to high-temperature conditions and the presence of various minerals and reduced compounds that characterize these vent systems. ↵↵Understanding the metabolic capabilities of Bacillus mycoides str. AH603 could provide insights into the microbial dynamics of deep-sea ecosystems and their contributions to nutrient cycling. The adaptability of this strain to varying oxygen levels may also shed light on the evolutionary strategies employed by microorganisms to exploit extreme environments, highlighting the resilience and versatility of life in the deep sea." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 NZ_CM000737.1 Bac0000633 Bacillus mycoides str. ATCC 6462 "Bacillus mycoides str. ATCC 6462 is a Gram-positive, rod-shaped bacterium that thrives in the deep sea, specifically within the hydrothermal vent field of the Iheya Ridge in the Okinawa Trough. This strain exhibits facultative anaerobic respiration, allowing it to utilize both aerobic and anaerobic metabolic pathways depending on the availability of oxygen in its environment. ↵↵The deep-sea habitat of B. mycoides str. ATCC 6462 suggests an adaptation to extreme conditions, including high pressures and variable temperatures typically found in hydrothermal vent ecosystems. This adaptation may confer unique metabolic capabilities that enable it to exploit the rich nutrient sources available in such environments, potentially involving chemolithotrophic processes that are characteristic of many vent-associated microbes. ↵↵Understanding the ecological role of B. mycoides str. ATCC 6462 in hydrothermal systems may provide insights into nutrient cycling and microbial interactions under extreme conditions, highlighting the importance of such extremophiles in maintaining the balance of deep-sea ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 NZ_CP009692.1 Bac0000634 Bacillus mycoides str. VD078 "Bacillus mycoides str. VD078 is a Gram-positive, rod-shaped bacterium that thrives in the unique and extreme environment of the deep sea, specifically within the Iheya Ridge hydrothermal vent field of the Okinawa Trough. This microbe exhibits facultative anaerobic characteristics, allowing it to adapt to varying oxygen levels in its habitat, which is characterized by high pressure, elevated temperatures, and the presence of sulfide-rich environments.↵↵The adaptation of Bacillus mycoides str. VD078 to hydrothermal vent conditions suggests its potential involvement in biogeochemical cycling, particularly in sulfur and carbon processes, which are critical in such extreme ecosystems. Its ability to survive in a deep-sea habitat may also indicate the presence of unique metabolic pathways that could be leveraged for biotechnological applications, such as bioremediation or bioenergy production. The strain's resilience in an oligotrophic environment underscores the remarkable diversity and adaptability of microbial life in extreme conditions, contributing to our understanding of microbial ecology in the deep-sea ecosystem. Further research into its metabolic capabilities may reveal insights into microbial interactions and nutrient dynamics in hydrothermal vent communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 AHEV00000000.1 Bac0000635 Bacillus mycoides str. WSBC 10204 "Bacillus mycoides strain WSBC 10204 is a Gram-positive, rod-shaped bacterium that demonstrates facultative anaerobic metabolism. This microbe has been isolated from the deep sea environment, specifically the Iheya Ridge hydrothermal vent field located in the Okinawa Trough. ↵↵As a member of the Bacillus genus, it is expected to possess the ability to form spores, although the specific details regarding sporulation are not provided. The facultative anaerobic nature of B. mycoides WSBC 10204 suggests that it can thrive in both aerobic and anaerobic conditions, allowing it to exploit a range of ecological niches within its deep-sea habitat.↵↵The unique conditions of the hydrothermal vent environment, characterized by extreme temperatures, pressure, and chemical gradients, may influence the metabolic pathways and survival strategies employed by this strain. Understanding the physiological adaptations that allow B. mycoides WSBC 10204 to inhabit such an extreme environment can provide insights into microbial life in deep-sea ecosystems and contribute to our knowledge of biogeochemical processes in these habitats. Furthermore, studying this bacterium may also enhance our understanding of the roles these microbes play in nutrient cycling and energy flow in hydrothermal vent communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 NZ_CP009746.1 Bac0000636 Paenibacillus polymyxa str. ZF129 "Paenibacillus polymyxa str. ZF129 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, making it versatile in various habitats. Its facultative anaerobic nature allows it to grow in the presence or absence of oxygen, adapting to different environmental conditions. ↵↵Paenibacillus polymyxa is known for its ability to colonize diverse habitats, which may include soil, plants, and other organic environments, indicating its potential role in nutrient cycling and soil health. The sporulating capability of this strain suggests a robust survival strategy, enabling it to endure adverse conditions and remain viable in fluctuating environments. ↵↵Further research into the ecological roles of Paenibacillus polymyxa str. ZF129 could reveal its contributions to soil microbiomes and plant interactions, highlighting its importance in agricultural and ecological contexts." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa Positive Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 1406 NZ_CP040831.1 Bac0000637 Paenibacillus polymyxa str. DSM 365 "Paenibacillus polymyxa strain DSM 365 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain thrives at an optimal temperature of 37.0°C and derives energy through chemoheterotrophic processes, utilizing organic compounds as carbon and energy sources. ↵↵The capability to sporulate suggests that P. polymyxa can endure unfavorable environmental conditions, allowing it to persist in diverse habitats. As a facultative anaerobe, this microorganism can adapt to varying oxygen levels, indicating its versatility in different ecological niches. Its presence in multiple habitats underscores its potential role in various biological processes and interactions within microbial communities.↵↵Given its traits, P. polymyxa strain DSM 365 may contribute to soil health and nutrient cycling, particularly in environments where organic matter is available. The ability to sporulate could enhance its survival and ecological functionality in fluctuating conditions, highlighting the importance of this bacterium in promoting resilience within its habitat." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa Positive Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 1406 JMIQ00000000.1 Bac0000638 Paenibacillus polymyxa str. YC0136 "Paenibacillus polymyxa strain YC0136 is a Gram-positive, rod-shaped bacterium that demonstrates the capability of sporulation, allowing it to survive in various environments. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, adapting to utilize a range of substrates for growth. P. polymyxa str. YC0136 thrives optimally at a temperature of 37.0°C, which is typical for many mesophilic bacteria.↵↵As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, providing it with a versatile metabolic flexibility that enables colonization of diverse habitats. The ability to sporulate is particularly advantageous, allowing it to withstand unfavorable conditions, such as desiccation or nutrient limitation, thereby extending its ecological range.↵↵This versatility in energy utilization and growth conditions suggests that P. polymyxa str. YC0136 may play a significant role in various biogeochemical cycles, particularly in nutrient cycling within its habitats. Its sporulating nature may also contribute to its persistence in environments subject to fluctuation, making it a potential candidate for applications in agriculture or bioremediation, where resilience and adaptability are crucial for sustainability." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa Positive Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 1406 NZ_CP017967.2 Bac0000639 Paenibacillus polymyxa "Paenibacillus polymyxa is a type of Gram-positive, rod-shaped bacterium that thrives in a wide range of temperatures, classified as mesophilic, with a preference for temperatures between 20°C and 40°C. As a chemoheterotroph, it derives energy from the breakdown of organic compounds, using a respiratory metabolism to produce energy. This microbe is capable of fermenting a variety of substrates, including sugars, amino acids, and fatty acids, to produce ATP. The cells of P. polymyxa are typically slender, rod-shaped, and measure approximately 0.5-1.5 μm in width and 2-5 μm in length. They are capable of growing in a variety of environments, including soil, plant surfaces, and the human gut. In fact, P. polymyxa has been isolated from all body sites in all possible species, including skin, respiratory tract, gastrointestinal tract, and urogenital tract. P. polymyxa is an obligate aerobe, requiring oxygen to grow and survive. It is also a facultative anaerobe, able to tolerate low oxygen levels, but exhibits optimal growth in the presence of atmospheric oxygen. This bacterium is found in a variety of environments, including soil, decaying organic matter, and the surface of plants. Paenibacillus polymyxa has been recognized for its industrial applications, particularly in the production of enzymes and bioactive compounds. Its enzymes, such as amylases and proteases, have been used in various industries, including food processing, textile manufacturing, and bioremediation. Additionally, P. polymyxa has been investigated for its potential in the treatment of human diseases, including inflammatory bowel disease and cancer. Its unique characteristics, such as its ability to produce bioactive compounds and its tolerance to various environmental conditions, make it an attractive subject for further research and development." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa Positive Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 1406 LZCE00000000.1 Bac0000640 Bacillus pumilus "Bacillus pumilus is a Gram-positive, rod-shaped bacterium that thrives in a temperature range of mesophilic to thermophilic, with a preference for temperatures between 20-50°C. Its metabolism is categorized as chemoheterotroph, meaning it uses organic compounds as its energy source and requires oxygen for energy production. Specifically, it employs aerobic respiration to generate energy, breaking down complex organic molecules to produce ATP. The shape of B. pumilus is rod-like, with a length of approximately 1-5μm and a width of 0.5-1μm. Gram staining reveals the presence of a thick peptidoglycan layer, characteristic of Gram-positive bacteria. This microbe can be found in various body sites across all species, including soil, water, and the human gut. B. pumilus is an obligate aerobe, requiring oxygen for survival and growth. In its natural environment, it likely utilizes oxygen to facilitate cellular respiration, as it is unable to survive in anaerobic conditions. As a member of the Bacillus genus, B. pumilus has been linked to various ecological roles, including soil remediation and the production of antibiotics. Its ability to degrade pollutants and produce bioactive compounds makes it a valuable target for biological research and biotechnological applications. Additionally, B. pumilus has been used as a model organism for space research, having been sent to space as part of the NASA's Spaceflight Radiation Effects Laboratory. The microbe's ability to withstand extreme environments, including radiation and temperatures, has made it an attractive subject for studying the effects of space travel on microbial life." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 NZ_CP027116.1 Bac0000641 Bacillus pumilus str. Pine1 "Bacillus pumilus strain Pine1 is a Gram-positive, rod-shaped bacterium that demonstrates the ability to sporulate and thrives in terrestrial environments as an aerobic organism. This organism is characterized by its robust survival mechanisms, including the formation of endospores, which allow it to endure extreme conditions in its habitat. As a member of the Bacillus genus, B. pumilus Pine1 is notable for its metabolic versatility, enabling it to utilize various organic compounds in the presence of oxygen.↵↵The sporulation process is a critical survival strategy employed by B. pumilus Pine1, facilitating its persistence in environments that may experience fluctuations in nutrient availability or stressors such as desiccation. The presence of endospores is not only significant for the survival of the organism but also indicates potential applications in biotechnology, particularly in bioremediation and as a biofertilizer.↵↵Understanding the ecological role of B. pumilus Pine1 in terrestrial ecosystems contributes to insights into its interactions with soil microbiomes and its potential impact on nutrient cycling. This bacterium, through its aerobic metabolism and sporulation capabilities, may play a crucial role in maintaining soil health and fertility, highlighting the importance of microbial diversity in terrestrial habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 SZNF00000000.1 Bac0000642 Bacillus pumilus str. Ps115 "Bacillus pumilus strain Ps115 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrives in terrestrial habitats as an obligate aerobe. This strain is part of the Bacillus genus, which is well-known for its resilience and adaptability in various environments, primarily due to its sporulation capabilities. The formation of spores allows B. pumilus Ps115 to endure extreme conditions, including desiccation and nutrient deprivation, thereby enhancing its survival in terrestrial ecosystems.↵↵As a strictly aerobic organism, B. pumilus Ps115 requires oxygen for its metabolic processes, which aligns with its ecological niche in soil environments where oxygen is readily available. The presence of this bacterium in terrestrial habitats suggests a potential role in nutrient cycling within soil ecosystems, contributing to the breakdown of organic matter. Furthermore, the ability to form spores may facilitate its dispersal across different substrates, enabling it to colonize new environments effectively.↵↵Overall, B. pumilus strain Ps115 exemplifies the ecological resilience of soil-dwelling bacteria, highlighting the importance of sporulation in their survival strategies and their potential contributions to soil health and nutrient dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 RWKR00000000.1 Bac0000643 Lysinibacillus capsici "Lysinibacillus capsici is a Gram-positive, rod-shaped bacterium that is characterized by its ability to form spores and its requirement for aerobic conditions. This microbe exhibits a specialized habitat, indicating a potential adaptation to specific environmental niches. As a sporulating organism, L. capsici can endure adverse conditions by forming resilient spores, which may contribute to its survival and persistence in its ecological niche.↵↵The aerobic nature of L. capsici suggests that it thrives in environments where oxygen is readily available, which may influence its distribution and ecological interactions. Its sporulation capacity not only aids in survival but also plays a significant role in its reproductive strategy, enabling it to withstand fluctuations in environmental conditions.↵↵The unique combination of traits in Lysinibacillus capsici underscores the importance of aerobic metabolism in its life cycle, potentially influencing its role in nutrient cycling within its specialized habitat. This adaptability may lend insights into its interactions with other microorganisms and its involvement in biogeochemical processes, highlighting its significance in its ecosystem." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus capsici Positive Rod Yes 1 1 Aerobe Mesophilic Specialized Free living Sporulating 1421 UAQE00000000.1 Bac0000644 Geobacillus stearothermophilus str. 15 "Geobacillus stearothermophilus str. 15 is a rod-shaped, aerobic bacterium exhibiting variable Gram staining characteristics. This thermophilic organism is primarily found in extreme environments, including active volcanic areas and in instances of spoiled canned food, highlighting its resilience and adaptability to high-temperature habitats.↵↵G. stearothermophilus is notable for its capability to thrive at elevated temperatures, which is reflected in its ecological niches. The presence of this microbe in spoiled canned food suggests its potential role in food spoilage processes, particularly in conditions where temperature control is inadequate. The ability of this strain to survive and grow in such diverse environments may provide insights into its metabolic pathways and stress response mechanisms.↵↵Furthermore, the occurrence of G. stearothermophilus in volcanic regions indicates its potential involvement in biogeochemical cycles, particularly in the degradation of organic matter in extreme heat. Understanding the traits of this strain could contribute to biotechnological applications, including its use in industrial processes that require thermophilic microorganisms. The study of G. stearothermophilus str. 15 thus provides a valuable perspective on microbial life in extreme environments and its implications for ecological balance and biotechnological innovation." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe thermophilic active volcanic area; spoiled canned food 1422 LVHZ00000000.1 Bac0000645 Geobacillus stearothermophilus "Geobacillus stearothermophilus is a gram-positive, rod-shaped bacterium classified as a thermophile, thriving optimally at elevated temperatures, typically around 55-75°C. This microbe is a chemoheterotroph, obtaining its energy through the decomposition of organic compounds, and it is an obligate aerobe, requiring oxygen for its growth and metabolism.As a member of the Bacillaceae family, G. stearothermophilus showcases characteristic resilience; it forms durable endospores that allow it to survive extreme conditions, including high heat and desiccation. These spores can withstand autoclaving, a feature that makes this organism particularly significant in sterilization validation processes in laboratories and healthcare settings. The ability to thrive in such harsh environments also points to its widespread presence in soil and thermal springs, where it plays a crucial role in the decomposition of organic matter. In laboratory and industrial applications, G. stearothermophilus is often used as a biological indicator to assess the effectiveness of sterilization processes, particularly in the medical field. Its spores serve as a benchmark; if the spores are killed during sterilization, it provides confidence that other pathogens have also been eliminated.Furthermore, G. stearothermophilus is notable for producing thermostable enzymes, which are utilized in various biotechnological applications, such as biofuel production and food processing, due to their activity at high temperatures. This bacterium’s ability to thrive under extreme conditions and its practical applications in industry highlight its significance within the microbial world." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe thermophilic active volcanic area; spoiled canned food 1422 LQYV00000000.1 Bac0000646 Bacillus subtilis str. 51_TX "Bacillus subtilis strain 51_TX is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to withstand adverse environmental conditions. This strain is facultatively anaerobic, meaning it can grow in both the presence and absence of oxygen, which enhances its adaptability within various host-associated environments. Optimal growth temperatures for this bacterium are around 25.0°C, indicating a preference for moderate conditions that may align with specific ecological niches.↵↵The sporulation capability of Bacillus subtilis str. 51_TX is particularly significant, as it allows for survival in harsh conditions and may facilitate its persistence within host-associated habitats. This trait is often associated with the bacterium's role in nutrient cycling and its interactions with other microorganisms in its environment. Given these characteristics, Bacillus subtilis str. 51_TX may contribute to the microbial diversity and functional dynamics of its ecological niche, potentially influencing host health and ecosystem stability. Understanding the ecological roles of such strains may provide insights into their applications in biotechnology, particularly in fields such as agriculture and environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 SNWK00000000.1 Bac0000647 Bacillus subtilis str. SRCM103612 "Bacillus subtilis str. SRCM103612 is a Gram-positive, rod-shaped bacterium that demonstrates the ability to sporulate, a feature that allows it to survive in adverse conditions. This strain thrives optimally at a temperature of 25.0°C and exhibits facultative anaerobic respiration, indicating its metabolic versatility in utilizing both oxygen-rich and oxygen-poor environments. ↵↵Typically found in host-associated habitats, B. subtilis str. SRCM103612 may play a significant role in the microbial communities of its host, potentially contributing to processes such as nutrient cycling or competitive exclusion of pathogenic microorganisms. The ability to sporulate enhances its resilience, allowing it to persist in fluctuating environmental conditions while providing opportunities for interaction with a variety of hosts. ↵↵Overall, the physiological traits of B. subtilis str. SRCM103612 position it as a key player in the microbial ecology of its habitat, highlighting its potential contributions to the stability and health of host-associated microbiomes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NZ_CP035407.1 Bac0000648 Bacillus subtilis str. SRCM103773 "Bacillus subtilis strain SRCM103773 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, which allows it to endure unfavorable environmental conditions. This strain demonstrates a facultative anaerobic metabolism, enabling it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 25.0°C, indicating a preference for moderate temperatures, which aligns with its habitat being host-associated.↵↵The sporulation capability of B. subtilis SRCM103773 is particularly noteworthy, as it contributes to the bacterium's resilience and survival in diverse environments, including within host organisms. This trait is not only critical for its lifecycle but also plays a role in its interactions with other microbes and the host's immune system. The ability to form spores allows B. subtilis to persist in various ecological niches, potentially influencing the microbial community structure within the host environment.↵↵Understanding the traits of Bacillus subtilis strain SRCM103773 can provide insights into its potential applications in biotechnology, particularly in the fields of agriculture and probiotics, where its resilience and adaptability may contribute to beneficial interactions within host organisms." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NZ_CP035397.1 Bac0000649 Bacillus subtilis "Bacillus subtilis is a mesophile, heterotrophic, chemoheterotroph bacterium that produces energy through substrate-level phosphorylation, is Gram-positive, rod-shaped, found in soil and various body sites, and is a facultative anaerobe. This versatile microbe thrives at moderate temperatures, typically between 20°C and 45°C, making it well-suited for diverse environments. As a heterotroph, Bacillus subtilis relies on organic compounds for energy and carbon, utilizing a range of substrates, including carbohydrates and proteins, for its metabolic processes. The Gram-positive nature of Bacillus subtilis is characterized by a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram staining process, giving it a distinctive purple appearance under the microscope. Its rod-shaped morphology contributes to its classification within the Bacillus genus, which encompasses various species with similar structural traits. Bacillus subtilis can be found in a variety of body sites, particularly in the gastrointestinal tracts of humans and animals, as well as in soil and on plant surfaces, where it plays a role in nutrient cycling and soil health. As a facultative anaerobe, it possesses the ability to grow in both the presence and absence of oxygen, allowing it to adapt to fluctuating environmental conditions. Beyond its ecological significance, Bacillus subtilis is widely recognized for its applications in biotechnology and industry. It is often utilized as a probiotic and in the production of enzymes, antibiotics, and fermented foods. Additionally, its ability to form resilient spores allows it to survive extreme conditions, making it a model organism for research in microbial physiology and genetics. The study of Bacillus subtilis has advanced our understanding of bacterial endospore formation and has implications for food safety and preservation." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NQYD00000000.1 Bac0000650 Bacillus subtilis str. Bacillus subtilis SEM-9 "Bacillus subtilis str. Bacillus subtilis SEM-9 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, a key trait that enhances its survival in various environments. This strain thrives optimally at a temperature of 25.0°C and demonstrates facultative anaerobic respiration, allowing it to adapt to fluctuating oxygen levels in its habitat. Notably, B. subtilis SEM-9 is characterized as being host-associated, suggesting a potential relationship with specific host organisms, which may influence its ecological role and interactions within microbial communities.↵↵The sporulation capability of B. subtilis SEM-9 is particularly significant, as it enables the bacterium to form resilient spores in response to adverse conditions, thus enhancing its survival and dispersal. This trait is fundamental for its persistence in host-associated environments, where nutrient availability and competition may vary. Given these characteristics, B. subtilis SEM-9 may play a vital role in nutrient cycling or as a beneficial microbe in its host, potentially contributing to the overall health and functionality of the associated microbiome. Further studies could provide insights into its specific interactions and contributions within these ecological niches." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NZ_CP021123.1 Bac0000651 Parageobacillus thermoglucosidasius str. W-2 "Parageobacillus thermoglucosidasius strain W-2 is a Gram-positive, rod-shaped bacterium characterized by its thermophilic nature and ability to utilize various carbohydrates. This species is notable for its capacity to hydrolyze starch, a trait that is particularly significant in industrial applications involving the conversion of biomass into fermentable sugars. The optimal growth temperature for P. thermoglucosidasius W-2 suggests that it thrives in high-temperature environments, which may include geothermal habitats or industrial processes involving heat.↵↵The rod shape of P. thermoglucosidasius W-2 contributes to its adaptability in diverse environments, allowing for efficient nutrient uptake and growth under thermophilic conditions. This adaptability is enhanced by its metabolic versatility, positioning it as a potential candidate for biotechnological applications, such as biofuel production, where high-temperature fermentation processes are advantageous.↵↵Furthermore, the ability of Parageobacillus thermoglucosidasius W-2 to break down complex carbohydrates indicates its ecological role in nutrient cycling within thermophilic microbial communities. This capacity not only highlights its potential in industrial applications but also suggests that it may play a significant part in the degradation of organic matter in thermally enriched ecosystems, contributing to the overall dynamics of microbial metabolism in such environments." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus thermoglucosidasius positive Rod thermophilic 1426 LXMA00000000.1 Bac0000652 Parageobacillus thermoglucosidasius "Parageobacillus thermoglucosidasius is a Gram-positive, rod-shaped bacterium characterized by its ability to thrive in high-temperature environments. This organism is notable for its thermophilic nature, allowing it to grow optimally at elevated temperatures, which is a significant trait for its potential applications in biotechnology and industrial processes. ↵↵The rod-shaped morphology of P. thermoglucosidasius is a defining feature, contributing to its adaptability in various thermal niches. This bacterium is known for its capacity to produce enzymes, specifically glucosidases, which are vital for the hydrolysis of glycosidic bonds in polysaccharides. Such enzymatic activity is particularly valuable in bioconversion processes, where the breakdown of complex carbohydrates can lead to the production of fermentable sugars.↵↵In addition to its industrial relevance, P. thermoglucosidasius serves as a model organism for studying the mechanisms of thermophily and enzyme stability at high temperatures. Its resilience and metabolic capabilities in extreme conditions provide insights into microbial adaptation and the evolutionary pressures that shape thermophilic life. Understanding these traits not only enhances our knowledge of microbial biodiversity but also informs the development of robust biocatalysts for sustainable practices in various sectors, including biofuel production and bioremediation." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus thermoglucosidasius positive Rod thermophilic 1426 LUCT00000000.1 Bac0000653 Bacillus thuringiensis str. ATCC 10792 "Bacillus thuringiensis str. ATCC 10792 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and its facultative anaerobic metabolism. This microbe is primarily host-associated, indicating a symbiotic or parasitic relationship with its environment. Its ability to form spores enhances its resilience and survival in varied conditions, allowing it to persist in host-associated habitats where nutrient availability may fluctuate. ↵↵Bacillus thuringiensis is widely recognized for producing insecticidal proteins, which contribute to its application in biological pest control; however, specific details regarding the production of these proteins in strain ATCC 10792 are not provided. The facultative anaerobic nature of this strain allows it to thrive in both aerobic and anaerobic environments, providing metabolic flexibility that may enable it to colonize diverse ecological niches.↵↵Understanding the ecological role of Bacillus thuringiensis str. ATCC 10792 within its host-associated habitat can provide insights into microbial interactions and the potential for biocontrol applications. The strain's sporulating capability, combined with its adaptability to varying oxygen levels, may influence its competitive dynamics with other microorganisms and its efficacy in ecological systems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP021064.1 Bac0000654 Bacillus thuringiensis str. C15 "Bacillus thuringiensis strain C15 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated environments. This strain is classified as a facultative anaerobe, indicating its versatility in utilizing oxygen for respiration while also being capable of surviving in oxygen-limited conditions. The sporulating nature of B. thuringiensis C15 allows it to form resilient endospores, which can withstand adverse environmental conditions, thus enhancing its survival and persistence in various habitats.↵↵Bacillus thuringiensis is widely recognized for its insecticidal properties, primarily attributed to the production of crystal proteins (Cry proteins) during sporulation, which are toxic to certain insect larvae. While specific pathogenicity details for strain C15 are not provided, the general ecological role of B. thuringiensis suggests that it may contribute to biological control in agricultural settings by targeting pest populations.↵↵Furthermore, the host-associated habitat of B. thuringiensis C15 implies a potential symbiotic relationship with its host organisms, possibly aiding in nutrient acquisition or providing protective benefits against pathogens. This association highlights the intricate interactions within microbial communities and underscores the ecological importance of B. thuringiensis in maintaining the health and balance of its host environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP021443.1 Bac0000655 Bacillus thuringiensis str. HS18-1 "Bacillus thuringiensis strain HS18-1 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated environments. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its habitat. As a member of the Bacillus genus, B. thuringiensis HS18-1 is particularly notable for its production of insecticidal crystal proteins, which are utilized in biopesticide formulations.↵↵The sporulation capability of this strain enhances its resilience, enabling it to survive in conditions where nutrients may be scarce or in fluctuating environmental states. This survival strategy is critical for its persistence in host-associated niches, potentially allowing the bacterium to establish symbiotic or beneficial relationships with its hosts. ↵↵The facultative anaerobic nature of B. thuringiensis HS18-1 suggests a versatile metabolic approach, facilitating its growth in both aerobic and anaerobic conditions. This trait may confer an ecological advantage in diverse environments, where oxygen availability can vary significantly. Understanding the metabolic flexibility and sporulation ability of B. thuringiensis HS18-1 can provide insights into its role in biological control and its interactions with host organisms, highlighting its potential applications in sustainable agriculture and pest management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP012100.1 Bac0000656 Bacillus thuringiensis str. m401 "Bacillus thuringiensis strain m401 is a Gram-positive, rod-shaped bacterium that is characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain, belonging to the Bacillus genus, is primarily found in host-associated environments, suggesting a close relationship with specific organisms or ecosystems. The capacity for sporulation is a significant adaptive trait, enabling the bacterium to withstand unfavorable conditions and facilitate survival in diverse habitats.↵↵As a facultative anaerobe, Bacillus thuringiensis str. m401 can thrive in both aerobic and anaerobic conditions, providing it with a versatile ecological niche. This metabolic flexibility allows the bacterium to adapt to varying oxygen levels, which may be influenced by its host environment. The presence of this strain in host-associated habitats hints at potential interactions with eukaryotic organisms, possibly involving symbiotic or commensal relationships.↵↵The ecological role of Bacillus thuringiensis str. m401 may extend beyond its immediate habitat, as its sporulation capability could contribute to soil health and nutrient cycling when spores are released into the environment. Thus, this strain exemplifies the dynamic nature of microbial life, highlighting its potential contributions to ecosystem functioning and resilience." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_PYAP02000001.1 Bac0000657 Bacillus thuringiensis str. QZL38 "Bacillus thuringiensis strain QZL38 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and its facultative anaerobic metabolism. This strain is typically found in host-associated environments, suggesting a potential symbiotic or parasitic relationship with its host organisms. The capacity for sporulation indicates that B. thuringiensis str. QZL38 can endure adverse environmental conditions, forming resilient spores that can survive until favorable conditions arise for growth and reproduction. ↵↵As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, which may facilitate its survival in diverse ecological niches associated with host organisms. The adaptability of B. thuringiensis str. QZL38 to varying oxygen levels may also play a role in its ecological interactions, potentially allowing it to colonize a range of host species under different environmental conditions. ↵↵The ecological versatility of this microbe, combined with its sporulation capability, underscores its potential significance in microbial communities and its role in nutrient cycling within host-associated habitats. Further studies could elucidate its specific interactions with hosts and other microorganisms in these environments, enhancing our understanding of its ecological impact." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP032610.1 Bac0000658 Bacillus thuringiensis str. SCG04-02 "Bacillus thuringiensis strain SCG04-02 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a facultative anaerobe. This strain is primarily found in host-associated environments, indicating its potential association with specific biological hosts. The ability to form spores is a critical trait that enhances its survival and persistence in various environments, allowing it to withstand unfavorable conditions.↵↵As a facultative anaerobe, Bacillus thuringiensis SCG04-02 can thrive in both aerobic and anaerobic conditions, which may facilitate its adaptability to different ecological niches. This versatility in oxygen utilization suggests that the strain may play a role in diverse metabolic pathways, depending on the availability of oxygen in its habitat.↵↵In addition to its biological characteristics, the host-associated nature of this strain points to potential interactions with its hosts, which could include mutualistic or competitive relationships. Such interactions may influence microbial community dynamics and contribute to the overall health of the host organism. Understanding the ecological role of Bacillus thuringiensis SCG04-02 within its associated habitats could provide insights into its functions in various ecosystems, particularly in the context of nutrient cycling and microbial community structure." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP017573.1 Bac0000659 Bacillus thuringiensis "Bacillus thuringiensis, a species of the Bacillus genus, is a Gram-positive, rod-shaped bacterium that thrives in moderate temperatures, typically ranging from 20-40°C, falling under the temperature preference category of ""mesophilic"". Its metabolism is chemoheterotrophic, meaning it obtains energy by degrading organic compounds, which are its primary energy source. B. thuringiensis produces energy through the process of cellular respiration, utilizing the energy stored in the organic compounds to generate ATP. As a heterotroph, it cannot produce its own food through photosynthesis, but relies on external sources of energy. When stained with Gram's stain, B. thuringiensis exhibits a positive reaction, indicating the presence of a thick peptidoglycan layer in its cell wall. Its rod-shaped morphology, characteristic of the Bacillus genus, is a distinguishing feature of this microbe. B. thuringiensis is present in various environments, including soil, water, and the guts of insects, which provides it with a diverse range of substrates to feed on. As a microorganism, it can colonize all body sites in all possible species, playing a crucial role in the ecosystem by decomposing organic matter and recycling nutrients. In terms of oxygen preference, B. thuringiensis is a facultative anaerobe, able to thrive in the presence or absence of oxygen. It can survive in both aerobic and anaerobic environments, making it adaptable to different ecological niches. A notable feature of B. thuringiensis is its ability to produce a toxin that is lethal to certain insects, specifically Lepidoptera and Coleoptera larvae. This property has led to the development of genetically engineered crops, such as corn and cotton, which produce this toxin and provide a natural form of pest control. In addition, B. thuringiensis is a natural biocontrol agent, used to manage insect populations in agricultural ecosystems. Its beneficial properties have also been exploited in the production of biopesticides, offering a more environmentally friendly alternative to traditional chemical pesticides." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NHNP00000000.1 Bac0000660 Bacillus thuringiensis str. Bacillus thuringiensis HM-311 "Bacillus thuringiensis str. HM-311 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a facultative anaerobe. This strain is associated with host organisms, indicating a potential symbiotic or pathogenic relationship, though specific interactions have not been detailed. The ability to sporulate enhances its survival in various environments, allowing it to persist under adverse conditions that may be encountered within host tissues or the surrounding habitat.↵↵As a facultative anaerobe, B. thuringiensis HM-311 can adapt to both aerobic and anaerobic conditions, which may provide a competitive advantage in fluctuating environments. This metabolic flexibility may play a crucial role in its ability to thrive in diverse ecological niches associated with its host. Moreover, the sporulation process not only aids in survival but may also facilitate dispersal, allowing the bacterium to colonize new hosts or environments when conditions become favorable. Understanding the ecological dynamics of B. thuringiensis HM-311 could provide insights into its role within its associated ecosystem, particularly in how it interacts with other microorganisms and contributes to the microbial community structure." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP040783.1 Bac0000661 Bacillus thuringiensis str. CTC "Bacillus thuringiensis str. CTC is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated environments. This facultative anaerobe can adapt to varying oxygen levels, allowing it to occupy diverse ecological niches, particularly those associated with hosts. ↵↵B. thuringiensis is renowned for its production of insecticidal crystal proteins, which have garnered significant attention in agricultural biotechnology as a biopesticide. The sporulation ability of this strain suggests it can endure unfavorable conditions, potentially enhancing its survival in host-associated habitats where competition and environmental fluctuations may be prevalent.↵↵The ecological role of B. thuringiensis str. CTC may extend beyond its use in pest control; its association with hosts could imply a complex interaction that influences microbial community dynamics. Understanding its interactions within these communities might shed light on the ecological balance between beneficial and pathogenic microorganisms in agricultural systems, emphasizing the need for further research into its behavior in natural environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP013273.1 Bac0000662 Bacillus thuringiensis str. HD1011 "Bacillus thuringiensis strain HD1011 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive in a host-associated habitat. As a facultative anaerobe, this strain can adapt to varying oxygen conditions, allowing it to colonize diverse environments associated with its hosts. ↵↵Known for its role as a biocontrol agent, B. thuringiensis produces insecticidal proteins that are effective against various pest species, which highlights its potential applications in agriculture for pest management. The sporulation ability of this strain is particularly significant, as it enables the bacterium to survive in adverse conditions, ensuring its persistence within host environments and optimizing its biocontrol efficacy.↵↵Additionally, the host-associated nature of B. thuringiensis HD1011 suggests a potential symbiotic relationship with its hosts, possibly contributing to the microbiota dynamics and influencing host health and resistance to pathogens. This characteristic positions B. thuringiensis HD1011 as not only a biopesticide but also a candidate for further research into its role within microbial communities in agricultural ecosystems. The ability to adapt to different oxygen levels further emphasizes the ecological versatility of this strain, making it an interesting subject for studies on microbial resilience and interactions in complex environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP009335.1 Bac0000663 Bacillus thuringiensis str. LP_2_YM "Bacillus thuringiensis str. LP_2_YM is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a facultative anaerobe. This strain is characterized by its ability to thrive in host-associated habitats, suggesting a potential ecological role in association with specific hosts or environments. The facultative anaerobic nature of B. thuringiensis str. LP_2_YM allows it to adapt to varying oxygen levels, which is advantageous for survival in diverse ecological niches. ↵↵As a sporulating organism, this strain can form spores that contribute to its resilience and ability to endure unfavorable conditions. The presence of this bacterium in host-associated environments indicates a potential for interactions with other microorganisms or hosts, possibly influencing local microbial communities and nutrient cycling. Given its traits, B. thuringiensis str. LP_2_YM may play a role in the dynamics of its ecosystem, potentially impacting host health or contributing to biological processes such as decomposition or nutrient mobilization. ↵↵Understanding the specific interactions and roles of B. thuringiensis str. LP_2_YM within its habitat could provide valuable insights into its ecological significance and potential applications in biotechnology or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 SMDG00000000.1 Bac0000664 Bacillus thuringiensis str. MW "Bacillus thuringiensis strain MW is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a facultative anaerobe. This strain is typically associated with specific hosts, indicating a potential relationship with particular organisms or environments. The ability to form spores suggests that B. thuringiensis str. MW can endure adverse conditions, allowing it to persist in various habitats until favorable conditions for growth are restored.↵↵The facultative anaerobic nature of this strain implies that it can thrive in both aerobic and anaerobic environments, enhancing its versatility in different ecological niches. This trait may facilitate its survival in diverse habitats, including those with fluctuating oxygen levels, which are common in natural ecosystems. ↵↵Bacillus thuringiensis is well-known for its role in biocontrol, particularly against insect pests, owing to its production of insecticidal crystal proteins. While the specific traits of strain MW do not provide direct information on its biocontrol efficacy, its host-associated lifestyle and sporulation ability may indicate a potential ecological role in the regulation of host populations in its natural environment. Understanding the ecological interactions of B. thuringiensis str. MW could yield insights into its function within microbial communities and its potential applications in sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 SUPP00000000.1 Bac0000665 Bacillus thuringiensis str. MYBT18246 "Bacillus thuringiensis strain MYBT18246 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated environments. This strain exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen conditions within its habitat. B. thuringiensis is widely recognized for its production of insecticidal proteins, particularly during sporulation, which contribute to its effectiveness as a biocontrol agent against various pests.↵↵The capacity for sporulation enables B. thuringiensis MYBT18246 to survive in challenging conditions, maintaining viability in diverse environments. Its association with hosts suggests a specialized ecological role, potentially interacting with specific organisms in its habitat, which may influence local microbial communities and ecological dynamics. Understanding the specific interactions and the ecological niche of this strain can provide insights into its potential applications in sustainable agriculture and pest management strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP015357.1 Bac0000666 Bacillus thuringiensis serovar tolworthi str. Pasteur Institute Standard strain "Bacillus thuringiensis serovar tolworthi str. Pasteur Institute Standard strain is a Gram-positive, rod-shaped bacterium that displays the ability to sporulate, indicating its resilience and adaptability in various environments. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions, which may enhance its survival in diverse ecological niches, particularly those associated with host organisms.↵↵As a member of the Bacillus genus, this strain is known to inhabit host-associated environments, suggesting a potential relationship with specific organisms or ecosystems. The ability to form spores may provide a competitive advantage in fluctuating habitats, enabling the bacterium to withstand adverse conditions until favorable growth opportunities arise.↵↵In summary, Bacillus thuringiensis serovar tolworthi str. Pasteur Institute Standard strain exemplifies key traits such as its Gram-positive nature, rod shape, sporulation capability, and facultative anaerobic metabolism. These characteristics suggest that it may play a role in the dynamics of microbial communities in host-associated habitats, potentially influencing nutrient cycling and interactions within these ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1442 NZ_AP014865.1 Bac0000667 Paenibacillus amylolyticus "Paenibacillus amylolyticus is a Gram-positive, bacilli-shaped microorganism known for its unique ability to sporulate and form chains. It thrives in mesophilic conditions, with an optimal growth temperature around 30°C. As a chemoheterotroph, this bacterium primarily derives its energy from organic compounds, demonstrating fermentative and pectinolytic metabolism, which allows it to break down complex carbohydrates found in its soil habitat.This microbe is aerobic, requiring oxygen for its metabolic processes, which makes it well-suited for environments enriched with organic matter. It plays a crucial role in soil ecosystems by contributing to the decomposition of organic materials, thereby facilitating nutrient cycling. Its pectinolytic enzymes specifically enable the breakdown of pectin, a polysaccharide abundant in plant cell walls, which not only promotes soil health but also supports plant growth by releasing essential nutrients. An ecological insight into Paenibacillus amylolyticus reveals its potential role in sustainable agriculture and bioremediation. By enhancing soil fertility and aiding in the breakdown of agricultural waste, this microbe may help reduce the need for chemical fertilizers, promoting environmentally friendly farming practices. Furthermore, its ability to decompose pectin-rich plant debris could be harnessed to improve soil structure and health, contributing to more resilient agricultural systems in the face of climate change." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus amylolyticus Positive Rod Yes 1 Aerobic 30 Chemoheterotroph Mesophilic Soil Chains Sporulating 1451 MRTJ00000000.1 Bac0000668 Paenibacillus amylolyticus str. Heshi-A3 "Paenibacillus amylolyticus strain Heshi-A3 is a Gram-positive, rod-shaped bacterium that exhibits a unique chain-like arrangement of its cells. This strain is notable for its ability to sporulate, allowing it to survive in varying environmental conditions. Optimally, P. amylolyticus Heshi-A3 thrives at a temperature of 30.0 °C, indicating a preference for moderate thermal environments typically found in soil habitats. As a chemoheterotroph, this microbe derives its energy from organic compounds, which positions it as an important player in nutrient cycling within its ecosystem. ↵↵The aerobic nature of P. amylolyticus Heshi-A3 suggests that it requires oxygen for its metabolic processes, further emphasizing its role in soil environments where oxygen is available. The combination of its morphological characteristics, metabolic capabilities, and ecological niche underscores the potential contribution of this strain to soil health and fertility. Given its sporulating capability, P. amylolyticus Heshi-A3 may also play a role in soil resilience, enabling it to withstand periods of adverse conditions while participating in complex microbial interactions within the soil microbiome." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus amylolyticus Positive Rod Yes 1 Aerobic 30 Chemoheterotroph Mesophilic Soil Chains Sporulating 1451 BCNV00000000.1 Bac0000669 Bacillus atrophaeus str. PCI 246 "Bacillus atrophaeus str. PCI 246 is a Gram-positive, rod-shaped bacterium that is capable of sporulation and thrives in aerobic environments, primarily found in soil habitats. This strain is notable for its ability to form resilient spores, which provide a survival advantage in fluctuating environmental conditions, thereby enhancing its persistence in terrestrial ecosystems. As an aerobic organism, B. atrophaeus str. PCI 246 requires oxygen for growth, positioning it as a vital player in soil microbiomes where oxygen is readily available.↵↵The sporulation process in this strain not only contributes to its survival but also plays a role in nutrient cycling within the soil ecosystem. The presence of B. atrophaeus str. PCI 246 in soil environments may influence microbial community dynamics and soil health, as its spores can serve as a source of inoculum for the establishment of microbial populations following disturbances. Additionally, the ability to sporulate allows this bacterium to withstand extreme conditions, potentially facilitating its role in biogeochemical processes and contributing to the resilience of soil microbial communities. This adaptability underscores the ecological significance of B. atrophaeus str. PCI 246 in maintaining soil stability and fertility." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus atrophaeus Positive Rod Yes 1 1 Aerobe Mesophilic Soil Free living Sporulating 1452 JMTJ00000000.1 Bac0000670 Sporosarcina globispora str. DSM 4 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina globispora aerobic 1459 LGUF00000000.1 Bac0000671 Brevibacillus laterosporus str. MG64 "Brevibacillus laterosporus str. MG64 is a Gram-positive, rod-shaped bacterium that primarily inhabits various environments, including insects, red clay, red clay soil, soil, and water. This bacterium is notable for its ability to thrive in diverse habitats, suggesting a degree of ecological versatility and adaptability. ↵↵As a member of the Brevibacillus genus, strain MG64 exhibits characteristics that allow it to withstand variable environmental conditions, which may be attributed to its robust cellular structure and metabolic capabilities. The presence of this bacterium in red clay and soil indicates its potential role in nutrient cycling and soil health, contributing to the microbial diversity within these ecosystems. ↵↵Furthermore, being associated with insects may suggest a symbiotic relationship or a role in the decomposition processes within these habitats. The ecological implications of Brevibacillus laterosporus str. MG64 highlight its potential contributions to the microbiome of soil and aquatic environments, as well as its interactions within insect populations. Understanding the specific functions and interactions of this strain in its natural habitats could provide insight into its ecological significance and potential applications in biotechnology or agriculture." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus laterosporus positive Rod insects; red clay; red clay soil; soil; water 1465 QJJD00000000.1 Bac0000672 Brevibacillus laterosporus "Brevibacillus laterosporus is a Gram-positive, rod-shaped bacterium commonly found in diverse environments, including soil, water, and specifically red clay habitats, as well as within insect hosts. This microorganism exhibits a robust adaptability to various ecological niches, which may contribute to its persistence in the environment. The presence of B. laterosporus in red clay soils suggests a potential role in the biogeochemical cycling of nutrients, particularly in regions where clay minerals dominate the substrate.↵↵In addition to its environmental resilience, B. laterosporus is notable for its capacity to thrive in association with insect hosts, which may facilitate unique interactions in microbial-insect symbioses. These relationships could provide insights into the evolutionary adaptations of bacteria in specific ecological contexts. Furthermore, the ecological versatility of Brevibacillus laterosporus highlights its potential contributions to soil health and nutrient dynamics, warranting further investigation into its physiological and ecological functions in various environments." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus laterosporus positive Rod insects; red clay; red clay soil; soil; water 1465 PRKQ00000000.1 Bac0000673 Sporosarcina pasteurii "Sporosarcina pasteurii is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 28.0 °C. This microbe is predominantly found in soil environments, where it contributes to various soil biochemical processes. ↵↵As a member of the Sporosarcina genus, S. pasteurii is notable for its unique ability to precipitate calcium carbonate, a trait that has garnered attention for its potential applications in bioremediation and soil stabilization. The organism's aerobic metabolism allows it to effectively utilize oxygen, which is essential for its growth and metabolic functions. ↵↵Research into S. pasteurii highlights its role in the mineralization of carbonates, suggesting that it may play a significant role in the natural cycling of minerals within soil ecosystems. This characteristic not only showcases its ecological importance but also positions it as a candidate for innovative biotechnological applications, such as in the development of bio-cement or in enhancing soil structure and fertility. Understanding the specific interactions and mechanisms by which S. pasteurii operates within its habitat could provide valuable insights into soil health and sustainability practices." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina pasteurii positive Rod aerobic 28 soil 1474 UGYZ00000000.1 Bac0000674 Sporosarcina psychrophila str. DSM 6497 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina psychrophila 1476 NZ_CP014616.1 Bac0000675 Paenibacillus larvae subsp. pulvifaciens Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae 1477 NZ_CP020558.1 Bac0000676 Peribacillus simplex str. WY10 "Peribacillus simplex strain WY10 is a Gram-positive, rod-shaped bacterium that thrives in warm arid soils and exhibits an aerobic mode of respiration. The organism's adaptation to its habitat suggests a capacity for surviving in environments characterized by high temperatures and limited moisture, conditions that are often challenging for many microbial species. ↵↵The Gram-positive nature of P. simplex str. WY10 indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in harsh environmental conditions. The rod shape of the bacterium is a common morphological trait among many soil-dwelling microbes, potentially influencing its motility and ability to access nutrients within the soil matrix.↵↵Given its aerobic requirement, Peribacillus simplex str. WY10 likely engages in metabolic processes that utilize oxygen, which can facilitate the breakdown of organic materials in the soil. This process may play a crucial role in nutrient cycling, particularly in arid ecosystems where organic matter is often scarce. The adaptation of P. simplex str. WY10 to its specific ecological niche highlights the importance of microbial diversity in sustaining soil health and maintaining ecosystem function in extreme environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus simplex positive Rod aerobic warm arid soils 1478 NWQJ00000000.1 Bac0000677 Peribacillus simplex "Peribacillus simplex is a Gram-positive, rod-shaped bacterium that thrives in warm arid soils. This organism is classified as aerobic, indicating that it requires oxygen for its metabolic processes. The specific adaptation to warm, arid environments suggests a potential role in nutrient cycling and soil health within these ecosystems. ↵↵Given its habitat, P. simplex may possess physiological traits that enable it to withstand desiccation and high temperatures, which are characteristic of its ecological niche. The ability to survive and proliferate in such conditions could imply that P. simplex contributes to the microbial diversity of arid soils, playing a role in the decomposition of organic matter and the potential promotion of soil fertility.↵↵Overall, the ecological significance of Peribacillus simplex in warm arid soils may extend to its interactions with other microbial communities, possibly influencing soil structure and function in these challenging environments. Further research could elucidate its specific contributions to soil microbiomes and its potential applications in bioremediation or agriculture under similar climatic conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus simplex positive Rod aerobic warm arid soils 1478 FTMX00000000.1 Bac0000678 Peribacillus simplex str. SH-B26 "Peribacillus simplex strain SH-B26 is a Gram-positive, rod-shaped bacterium that thrives in warm, arid soils. This aerobic microorganism is adapted to environments characterized by low moisture levels and elevated temperatures, which are typical of its natural habitat. The Gram-positive nature of P. simplex str. SH-B26 suggests a thick peptidoglycan layer in its cell wall, which may confer resilience against environmental stressors commonly found in arid conditions.↵↵The aerobic metabolic requirements of this strain indicate that it relies on oxygen for its energy production, which could influence its distribution and interactions with other microbial communities in its habitat. The specific adaptations that enable P. simplex str. SH-B26 to flourish in such challenging conditions may include mechanisms for efficiently utilizing available nutrients and strategies for water conservation.↵↵Interestingly, the presence of this bacterium in warm arid soils highlights the potential role of Peribacillus species in soil health and nutrient cycling within these ecosystems. The ability of this strain to survive and metabolize in nutrient-poor environments suggests that it may contribute to the breakdown of organic matter, facilitating the availability of nutrients for other soil organisms. This ecological insight underscores the importance of studying extremophilic microbes like P. simplex str. SH-B26, as they may possess unique biological characteristics that can be harnessed for biotechnological applications in agriculture and environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus simplex positive Rod aerobic warm arid soils 1478 NZ_CP011009.1 Bac0000679 Bacillus smithii str. DSM 4216 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus smithii 1479 NZ_CP012024.1 Bac0000680 Paraclostridium bifermentans "Paraclostridium bifermentans is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, skin, and respiratory tract, of numerous species, including humans, animals, and insects. As an Obligate Anaerobe, P. bifermentans requires a strict anaerobic environment to grow, which is reflected in its inability to survive in the presence of oxygen. The Gram-positive cell wall of P. bifermentans provides it with a robust structural framework, while its rod-shaped morphology allows for efficient movement and colonization in its host. As a Chemoheterotroph, P. bifermentans relies on the breakdown of organic compounds to obtain energy, which is consistent with its presence in environments rich in organic matter. The mesophilic temperature preference of P. bifermentans indicates that it is well-suited to grow in temperatures ranging from 20-45°C, which is typical of many environments, including the human body. P. bifermentans has been implicated in various diseases, including gas gangrene and bacteremia, highlighting the importance of understanding its biology and ecology. The microbe's ability to produce toxins and fermented products has led to its exploration in biotechnological applications, such as the production of biofuels and other valuable compounds." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium bifermentans Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Sporulating Non-pathogenic 1490 MWJI00000000.1 Bac0000681 Clostridium botulinum str. AM282 "Clostridium botulinum strain AM282 is a Gram-positive, rod-shaped bacterium that exhibits a variety of cell arrangements, including pairs, singles, and chains. This strain is classified as a chemoorganotroph, meaning it derives energy from organic compounds, and it thrives optimally at a temperature of 37.0°C. C. botulinum AM282 is strictly anaerobic, requiring an oxygen-free environment for growth and metabolism. ↵↵The habitat of this strain is diverse, indicating its adaptability to different environmental conditions. The ability to form chains and pairs may suggest a potential for cooperative behavior or biofilm formation, which could enhance its survival in various habitats. Given its anaerobic nature and chemoorganotrophic metabolism, C. botulinum AM282 likely plays a role in organic matter decomposition in oxygen-depleted environments, contributing to nutrient cycling and ecosystem dynamics. ↵↵Further research into this strain's ecological interactions may provide insight into its specific role in anaerobic ecosystems and its potential applications in biotechnology or environmental management." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1491 NZ_CP013684.1 Bac0000682 Clostridium butyricum "Clostridium butyricum is a Gram-positive, rod-shaped microbe that thrives in a mesophilic temperature range, preferring temperatures between 25-40°C. It is classified as a chemoheterotroph, utilizing organic compounds as its energy source. C. butyricum produces energy through anaerobic fermentation, specifically by converting glucose into butyric acid, acetate, and hydrogen gas. This process is essential for its survival, as it allows the microbe to survive in environments where oxygen is scarce or absent. The Gram-staining property of C. butyricum indicates that its cell wall contains a thick peptidoglycan layer, which is characteristic of Gram-positive bacteria. Its rod-shaped morphology allows it to move efficiently through its surroundings, facilitating the absorption of nutrients and the release of waste products. C. butyricum is an obligate anaerobe, meaning it cannot survive in the presence of oxygen and will die if exposed to it. This adaptation is crucial for its survival in environments where oxygen levels are low, such as the human gut. Its anaerobic metabolism also enables it to produce short-chain fatty acids, which can serve as energy sources for other microorganisms. This microbe can be found in various body sites, including the human gut, where it plays a role in the decomposition of complex nutrients and the production of volatile fatty acids. C. butyricum has also been isolated from soil, freshwater, and marine environments, highlighting its remarkable adaptability. In addition to its role in decomposition and nutrient cycling, C. butyricum has been explored for its potential applications in medicine and biotechnology. For instance, its ability to produce butyric acid has been exploited in the development of probiotics, which can help maintain a healthy gut microbiome. Furthermore, its enzymes have been used in the production of biofuels and bioplastics, demonstrating its significance in the search for sustainable energy solutions." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium butyricum Positive Anaerobe mesophilic rumen 1492 RSEV00000000.1 Bac0000683 Clostridium cochlearium Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium cochlearium anaerobic pit mud; silage 1494 FNGL00000000.1 Bac0000684 Clostridioides difficile str. CD-B18-123 "Clostridioides difficile strain CD-B18-123 is a Gram-positive, rod-shaped anaerobic bacterium that typically exists in pairs, chains, or as single cells. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological temperatures often found in mammalian hosts. As a chemoorganotroph, C. difficile strain CD-B18-123 derives its energy from organic compounds, which is characteristic of many bacteria residing within the host-associated environments, such as the gastrointestinal tract.↵↵C. difficile is known for its ability to form spores, although spore formation is not specified for this strain. The ecological niche of C. difficile, particularly in relation to its habitat, suggests a specialized adaptation to the anaerobic conditions of the intestinal microbiome. This adaptation allows the organism to compete effectively with other gut microbes for resources, particularly in environments altered by antibiotic treatment, which may disrupt the normal microbiota.↵↵The presence of C. difficile strain CD-B18-123 in host-associated habitats highlights its potential role in the complex interactions within the gut microbiome and underscores the importance of understanding its metabolic capabilities and ecological dynamics. Further research into this strain may elucidate its specific interactions with other microbial populations and its contributions to the overall health or dysbiosis of the host ecosystem." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Human 1496 SRMH00000000.1 Bac0000685 Clostridioides difficile "Clostridioides difficile, also known as C. difficile, is a gram-positive, spore-forming bacterium that thrives in a temperature range of 25-40°C, categorizing it as belonging to the temperate group. As a heterotroph, C. difficile obtains its energy by breaking down organic matter, specifically sugars and amino acids, in the absence of oxygen. This anaerobic metabolism allows it to produce energy through fermentation, resulting in the production of acetate and butyrate. C. difficile stains positive on gram stains, indicating its thick peptidoglycan layer. The bacterium is typically found in a rod-shaped, or bacillus, morphology. It can inhabit all body sites, including the gut, skin, and respiratory tract, across all species. However, it is most commonly associated with colonic infections in human beings. As an obligate anaerobe, C. difficile requires a low-oxygen environment to survive, which makes it well-suited for the gut, where oxygen levels are relatively low. In this anaerobic setting, C. difficile produces toxins A and B, which can cause severe gastrointestinal symptoms, including diarrhea, abdominal pain, and colitis. In the clinical setting, C. difficile infection (CDI) is a significant public health concern, particularly among older adults and those with compromised immune systems. CDI can lead to severe complications, including pseudomembranous colitis, toxic megacolon, and even death. Treatment for CDI typically involves antibiotics, often in combination with fecal microbiota transplantation (FMT), which involves infusing a mixture of healthy gut bacteria into the patient's colon." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Human 1496 CAAJMV000000000.1 Bac0000686 Clostridioides difficile str. RA09_70 "Clostridioides difficile strain RA09_70 is a Gram-positive, rod-shaped bacterium that typically organizes itself in chains, pairs, or as single cells. This anaerobic organism thrives optimally at a temperature of 37.0 °C, which aligns with the physiological conditions of its host-associated habitat. As a chemoorganotroph, C. difficile strain RA09_70 derives its energy from organic compounds, reinforcing its adaptation to environments rich in host-derived nutrients. ↵↵The specific arrangement of cells in chains and pairs suggests a potential for communication or cooperative behavior, characteristics that may play a role in its survival and persistence within host environments. The strain's anaerobic nature indicates it occupies ecological niches that are devoid of oxygen, further emphasizing its specialized adaptations to the gut microbiota of mammals, where it predominantly resides. ↵↵This combination of traits underscores the bacterium's ability to thrive in the complex and competitive ecosystem of the gastrointestinal tract, where it may interact with other microbial inhabitants and host factors. Understanding these characteristics can provide valuable insights into the ecological dynamics of gut microbiomes and the potential roles of C. difficile in various host-associated processes." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Human 1496 JPPA00000000.1 Bac0000687 Clostridium perfringens str. JP838 "Clostridium perfringens str. JP838 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, singles, or chains. This strain is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. It thrives optimally at a temperature of 37.0 °C, which is consistent with its habitat as a host-associated microbe, suggesting a potential association with warm-blooded animals or humans.↵↵As an anaerobe, C. perfringens str. JP838 requires an environment devoid of oxygen for growth and metabolism. This trait is characteristic of many members of the Clostridium genus, which commonly inhabit the gastrointestinal tracts of various hosts. The ability to grow in anaerobic conditions may confer advantages in microbial competition within the gut environment, where oxygen levels are minimal.↵↵The ecological role of C. perfringens str. JP838 may involve participation in the degradation of organic matter in host-associated environments, potentially influencing gut health and microbial community dynamics. Understanding this strain's metabolic capabilities and interactions within its ecological niche could provide further insights into the functional roles of anaerobic bacteria in host-associated microbiomes." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 NZ_CP013038.1 Bac0000688 Clostridium perfringens str. MJR7757A "Clostridium perfringens str. MJR7757A is a Gram-positive, rod-shaped bacterium that typically exists in pairs, singles, or chains. This strain is classified as a chemoorganotroph, utilizing organic compounds as its energy source. It thrives optimally at a temperature of 37.0°C, which is consistent with the physiological temperature of many host organisms. Notably, C. perfringens str. MJR7757A is an anaerobic organism, indicating that it primarily exists in environments devoid of oxygen, further underscoring its adaptation to host-associated habitats.↵↵The ability of C. perfringens str. MJR7757A to form various cell arrangements may play a role in its survival and proliferation within host environments, allowing for diverse interactions with host tissues and other microbial communities. This flexibility in cell arrangement could facilitate effective colonization and metabolic interactions, highlighting its ecological role in anaerobic niches. Understanding the physiological traits of this strain contributes to a broader comprehension of Clostridium species in relation to their ecological dynamics and potential implications in various biological contexts." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 LRPU00000000.1 Bac0000689 Clostridium perfringens str. tumat "Clostridium perfringens str. tumat is a Gram-positive, rod-shaped bacterium that typically appears in pairs, singles, or chains. This microorganism is a chemoorganotroph, deriving its energy from organic compounds, and thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of many warm-blooded hosts. C. perfringens str. tumat is an anaerobic organism, indicating that it requires environments devoid of oxygen for growth and metabolism.↵↵As a host-associated microbe, C. perfringens str. tumat likely resides in the gastrointestinal tracts of its hosts, where it may play a role in the complex microbial ecosystem. Its anaerobic nature allows it to occupy niches within the gut that are inhospitable to aerobic organisms, suggesting potential interactions with other gut microbiota and host metabolites. This specific adaptation to anaerobic environments underscores the importance of oxygen availability in shaping the microbial community structure within host-associated habitats.↵↵Understanding the traits of C. perfringens str. tumat may provide insights into its ecological roles within the gut microbiome and its potential influences on host health, particularly concerning nutrient metabolism and interactions with the immune system. Further research could illuminate its contributions to gut homeostasis and its implications for host-microbe interactions." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 RZGO00000000.1 Bac0000690 Clostridium perfringens "Clostridium perfringens is a gram-positive, rod-shaped microbe that thrives in a temperature range of 25-40°C, classifying it as thermostable. As a heterotroph, it obtains its energy from the breakdown of organic compounds, specifically glucose, through fermentation, producing lactic acid as its primary metabolic byproduct. This microbe is capable of producing energy through anaerobic respiration, utilizing the fermentation products to drive its metabolic activities. The gram-positive nature of Clostridium perfringens refers to the presence of a thick peptidoglycan layer in its cell wall, which is characteristic of this type of bacterium. In terms of shape, Clostridium perfringens is a rod-shaped bacterium, with a length of approximately 3-5 micrometers. It is widely distributed across all body sites, including the gastrointestinal tract, skin, and wounds, where it can establish itself in the absence of oxygen. As an obligate anaerobe, Clostridium perfringens requires an anoxic environment to grow, meaning it cannot tolerate the presence of oxygen. The cell wall of this microbe also contains a unique toxic compound, alpha-toxin, which is responsible for its pathogenic properties. Despite its toxic nature, Clostridium perfringens is a ubiquitous microbe that is naturally present in the gut of many animals, including humans. In fact, it is estimated that up to 80% of adults harbor Clostridium perfringens in their gastrointestinal tract, often without displaying any symptoms. However, in individuals with compromised immune systems or those who are malnourished, Clostridium perfringens can cause a range of diseases, including enteritis, abscesses, and toxic shock syndrome." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 NZ_CP025503.1 Bac0000691 Paeniclostridium sordellii str. JGS6382 "Paeniclostridium sordellii strain JGS6382 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to survive in adverse conditions. As a chemoheterotroph, this microorganism derives its energy from organic compounds, a trait that facilitates its growth in diverse environments, particularly in its natural habitat of soil. JGS6382 is strictly anaerobic, indicating that it thrives in environments devoid of oxygen, which is characteristic of many members of the Clostridia class. ↵↵The sporulation capability of Paeniclostridium sordellii str. JGS6382 is particularly noteworthy, as it not only contributes to the bacterium's resilience in fluctuating environmental conditions but also plays a crucial role in its life cycle and reproduction. Understanding the ecological role of such anaerobic, sporulating bacteria is essential, as they can significantly influence soil health and nutrient cycling. ↵↵Overall, the traits of Paeniclostridium sordellii str. JGS6382 underline its adaptability and functional importance in anaerobic soil ecosystems. The sporulation process may also be indicative of its potential interactions with other soil microorganisms, highlighting its role in the complex dynamics of microbial communities in soil environments." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium sordellii Positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Soil Sporulating 1505 NZ_LN681234.1 Bac0000692 Paeniclostridium sordellii str. UMC2 "Paeniclostridium sordellii str. UMC2 is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, positioning it within the group of sporulating anaerobes. This strain is a chemoheterotroph, indicating that it derives its energy from organic compounds, rather than through photosynthesis or inorganic substrates. P. sordellii str. UMC2 is primarily found in soil environments, where it likely plays a role in the decomposition of organic matter.↵↵As an anaerobic organism, P. sordellii str. UMC2 thrives in environments devoid of oxygen, which is characteristic of many soil-dwelling bacteria that contribute to nutrient cycling. The capacity for sporulation allows this microbe to endure unfavorable environmental conditions, thereby enhancing its survival in fluctuating habitats. The ecological role of P. sordellii str. UMC2 may be significant in the context of soil health, as it could participate in the breakdown of complex organic substances, influencing nutrient availability for other soil organisms.↵↵Overall, the traits of Paeniclostridium sordellii str. UMC2 suggest its potential contribution to soil ecosystems, particularly in enhancing organic matter turnover and maintaining microbial diversity in anaerobic niches." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium sordellii Positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Soil Sporulating 1505 NZ_LN681233.1 Bac0000693 Clostridium sp. "Clostridium sp. is a genus of Gram-positive, bacilli-shaped bacteria that are predominantly anaerobic and known for their ability to form spores. These microbes exist primarily as single cells and are commonly found within the intestinal microflora of animals, including humans. Clostridium species are notable for their diverse metabolic capabilities, functioning as chemoheterotrophs. They can engage in acetogenic and solventogenic processes, producing butanol among other solvents during fermentation. This ability makes them vital players in bioconversion, as they can convert various organic substrates into valuable chemical products. Typically classified as mesophilic, Clostridium sp. thrives in moderate temperature ranges, although their specific optimal temperature for growth remains undefined. Their anaerobic nature allows them to flourish in oxygen-depleted environments, where they play essential roles in various ecological and biochemical processes, including the breakdown of complex organic matter and nutrient cycling. One intriguing ecological insight about Clostridium sp. is their dual role in the gut microbiome: while they contribute significantly to fermentation processes and energy recovery from nutrients, certain pathogenic species within this genus can also lead to severe infections, highlighting a complex balance in microbial community dynamics. This balance underscores the importance of monitoring and understanding Clostridium populations, as disruptions can lead to dysbiosis and associated health issues in host organisms." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. Positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Animal Intestinal Microflora Singles Sporulating 1506 DPQF00000000.1 Bac0000694 Clostridium sp. ATCC 29733 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. ATCC 29733 1507 AWTA00000000.1 Bac0000695 Clostridium sporogenes "Clostridium sporogenes is a gram-positive, rod-shaped bacterium that thrives in environments with optimal temperatures within the mesophilic range (30-60°C), categorizing it as a mesophile. It is a facultative anaerobe, meaning it can grow in the presence or absence of oxygen, but it prefers to live in environments with reduced oxygen levels. This organism is a chemoheterotroph, relying on organic compounds as its energy source, and producing energy through anaerobic fermentation. As a gram-positive bacterium, Clostridium sporogenes has a thick peptidoglycan layer in its cell wall, which gives it a characteristic gram-positive staining reaction. Its rod-shaped morphology allows it to colonize a wide range of environments, including all body sites in various species, including humans, animals, and plants. Clostridium sporogenes is capable of producing spores, which are resistant to heat, radiation, and chemicals, enabling it to survive in extreme environments and withstand harsh conditions. These spores can remain dormant for extended periods, waiting for favorable conditions to germinate and grow. In terms of its metabolism, Clostridium sporogenes produces energy through the fermentation of carbohydrates, peptides, and amino acids, resulting in the production of acetate, ethanol, and lactic acid. Its ability to grow in a variety of environments and produce spores makes it a diverse and resilient microbe. Clostridium sporogenes is also known to be involved in the decomposition of organic matter, playing a role in recycling nutrients and shaping ecosystems. In humans, it can cause infections, particularly in individuals with compromised immune systems, and has been linked to septicemia, endocarditis, and meningitis. Despite its pathogenic potential, Clostridium sporogenes is also used in biotechnology applications, such as the production of enzymes and therapeutic compounds." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sporogenes Positive Anaerobe caecum; cheese; colon; dairy products; gut; intestine; pit mud 1509 UAWJ00000000.1 Bac0000696 Clostridium tetani "Clostridium tetani is a rod-shaped, Gram-positive bacterium that thrives in a warm environment, preferring temperatures between 28°C to 40°C, placing it in the temperature preference category of mesophilic. As a heterotroph, it obtains its energy by breaking down complex organic molecules, specifically requiring a supply of nutrients from its surroundings. This organism is an anaerobe, meaning it cannot tolerate the presence of oxygen, and instead, relies on fermentation to produce energy. During fermentation, C. tetani converts glucose into lactic acid, pyruvate, and ATP, allowing it to sustain its metabolic processes. The Gram-staining characteristic of C. tetani is positive, indicating the presence of a thick peptidoglycan layer in its cell wall. This bacterium typically exists as a single rod or a short chain of rods, with some species forming characteristic drumstick-like structures. Clostridium tetani is ubiquitous, found in various body sites, including the skin, gastrointestinal tract, and respiratory tract, of animals and humans. The species is present in all species of mammals, birds, reptiles, and amphibians. As an obligate anaerobe, C. tetani requires a reduced oxygen environment to survive and replicate. In the absence of oxygen, it undergoes a series of biochemical reactions that ultimately lead to the production of the potent neurotoxin tetanospasmin. Tetanospasmin is responsible for the characteristic symptoms of tetanus, including muscle stiffness, spasms, and rigidity. In addition to its role in tetanus, C. tetani has served as a model organism in the study of bacterial metabolism, particularly in the investigation of anaerobic energy production and nutrient uptake mechanisms. Its anaerobic nature has also led to the development of methods for the cultivation of other anaerobic microorganisms in the laboratory." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tetani Positive Rod No 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles 1513 QMAO00000000.1 Bac0000697 Thermoanaerobacter ethanolicus subsp. thermohydrosulfuricus "Thermoanaerobacter ethanolicus subsp. thermohydrosulfuricus is a nonsporulating, rod-shaped bacterium that thrives optimally at a temperature of 70.0°C and is classified as a chemoheterotroph, deriving energy from organic compounds. This strain is strictly anaerobic, meaning it requires environments devoid of oxygen for survival and metabolic activity. ↵↵Found in a variety of habitats, T. ethanolicus subsp. thermohydrosulfuricus plays a significant role in anaerobic ecosystems, where it likely contributes to the degradation of organic materials. Its ability to function at high temperatures suggests potential adaptations that enable it to inhabit thermophilic environments, such as hot springs or deep-sea hydrothermal vents.↵↵The metabolic capabilities of T. ethanolicus subsp. thermohydrosulfuricus highlight its importance in biogeochemical cycles, particularly in the breakdown of complex organic substrates under anaerobic conditions. This bacterium's unique traits may also offer insights into its potential applications in biotechnology, particularly in processes that require thermophilic anaerobic conditions, such as biofuel production and waste treatment. Understanding the specific ecological roles of such microorganisms can enhance our knowledge of microbial community dynamics in extreme environments." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter ethanolicus Rod No 1 Anaerobic 70 Chemoheterotroph Thermophilic Multiple Nonsporulating 1516 FNBS00000000.1 Bac0000698 Thermoanaerobacterium thermosaccharolyticum str. TG57 "Thermoanaerobacterium thermosaccharolyticum str. TG57 is a rod-shaped, nonsporulating bacterium that thrives in anaerobic conditions, specifically in the unique habitat of hot springs. This microbe is a chemoheterotroph, meaning it derives its energy and carbon from organic compounds, which it metabolizes in the absence of oxygen. The anaerobic nature of T. thermosaccharolyticum str. TG57 is particularly well-suited to its thermophilic environment, where high temperatures facilitate the biochemical reactions necessary for its survival and growth.↵↵Isolated from geothermal hot springs, T. thermosaccharolyticum str. TG57 exemplifies the adaptations required for life in extreme environments, where it plays a role in the microbial community dynamics and contributes to the biogeochemical cycling of organic matter. The organism's metabolic processes likely influence the thermal gradients and nutrient availability in its habitat, highlighting the importance of anaerobic bacteria in the ecology of hot springs. Understanding the traits and functions of T. thermosaccharolyticum str. TG57 can provide insights into microbial adaptations to extreme environments and the potential for biotechnological applications in thermophilic fermentation processes." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium thermosaccharolyticum Rod No 1 Anaerobic Chemoheterotroph Thermophilic Hot spring Nonsporulating 1517 NZ_CP016893.1 Bac0000699 Clostridium beijerinckii str. BAS/B3/I/124 "Clostridium beijerinckii strain BAS/B3/I/124 is a Gram-positive, rod-shaped bacterium that typically exists in pairs or singles, demonstrating its characteristic morphological arrangement. As a chemoorganotroph, this strain derives its energy from organic compounds, which is compatible with its natural habitats in fresh water and soil environments. Notably, C. beijerinckii str. BAS/B3/I/124 is strictly anaerobic, indicating that it thrives in environments devoid of oxygen, a trait that aligns with the ecological niches it occupies.↵↵The ability of this strain to metabolize organic substrates in anaerobic conditions underscores its potential role in nutrient cycling within its habitats, particularly in the degradation of organic matter. This metabolic capability may facilitate the breakdown of complex organic materials, contributing to soil fertility and the maintenance of freshwater ecosystems. Additionally, the presence of such anaerobic bacteria is crucial for the fermentation processes that can influence the biogeochemical dynamics of their environments.↵↵In summary, Clostridium beijerinckii str. BAS/B3/I/124 exemplifies the diversity of anaerobic microorganisms that play significant roles in organic matter decomposition, highlighting the importance of such microbes in sustaining ecological balance in their respective habitats." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1520 NZ_CP016090.1 Bac0000700 Clostridium beijerinckii str. BGS1 "Clostridium beijerinckii str. BGS1 is a Gram-positive, rod-shaped bacterium that exhibits a cell arrangement characterized by singles and pairs. This strain is classified as a chemoorganotroph, indicating its dependence on organic compounds for energy. C. beijerinckii str. BGS1 is an anaerobic organism, thriving in environments devoid of oxygen, which aligns with its typical habitats found in fresh water and soil. ↵↵The ability of C. beijerinckii str. BGS1 to metabolize organic matter in anaerobic conditions highlights its potential role in biogeochemical cycles, particularly in nutrient recycling processes within its natural habitats. The presence of this bacterium in soil ecosystems suggests it may contribute to the degradation of organic materials, thereby influencing soil health and fertility. Further research into its metabolic pathways could elucidate its specific interactions within microbial communities and its contributions to environmental sustainability." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1520 MBAF00000000.1 Bac0000701 Clostridium beijerinckii str. NCIMB 14988 "Clostridium beijerinckii str. NCIMB 14988 is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as single cells. This microorganism is classified as a chemoorganotroph, utilizing organic compounds as its energy source. C. beijerinckii str. NCIMB 14988 thrives in anaerobic environments, which aligns with its strict requirement for the absence of oxygen. Its natural habitats include freshwater systems and soil, where it can contribute to the nutrient cycling processes.↵↵The anaerobic nature of C. beijerinckii str. NCIMB 14988 allows it to play a significant role in the degradation of organic matter, particularly in environments rich in decaying plant material. This metabolic capability may enhance soil fertility and influence the microbial community structure within its habitats. Furthermore, the bacterium’s ability to survive in pairs or as single entities may confer advantages in its interactions with other microorganisms, potentially facilitating cooperative metabolic activities or competition for resources in its ecological niche. Understanding the traits and behaviors of this strain can provide insights into its functional contributions to microbial ecosystems, particularly in anaerobic conditions where organic material is abundant." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1520 NZ_CP010086.2 Bac0000702 Clostridium beijerinckii "Clostridium beijerinckii is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, soil, and sewage, across all possible species. As an obligate anaerobe, it necessitates a strict absence of oxygen to grow and survive. The gram-positive characteristic is attributed to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the gram staining procedure. Its rod shape allows for efficient movement and colonization in its environment. As a chemoheterotroph, Clostridium beijerinckii relies on organic compounds for energy and carbon sources, breaking down complex molecules into simpler ones to sustain its metabolic processes. The mesophilic temperature preference indicates that it grows optimally in moderate temperatures, typically between 20-45°C. Its ability to inhabit various body sites and environments is a testament to its adaptability and resilience. In terms of oxygen tolerance, its classification as an obligate anaerobe means that it is incapable of surviving in the presence of oxygen, making it well-suited to environments with low or no oxygen levels. Clostridium beijerinckii has been utilized in the production of butanol, a biofuel, through fermentation processes, highlighting its potential in industrial applications and contributing to the development of sustainable energy solutions." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1520 NZ_LN908215.1 Bac0000703 [Clostridium] innocuum "Clostridium innocuum is a Gram-positive, rod-shaped bacterium that demonstrates the ability to sporulate and thrives under anaerobic conditions. This microbe is classified as a chemoheterotroph, deriving its energy from organic compounds, which allows it to inhabit a variety of ecological niches. Optimal growth occurs at a temperature of 37.0°C, aligning with the physiological conditions typical of mammalian hosts.↵↵As a member of the Clostridia class, C. innocuum is part of a diverse group of microbes known for their ability to form spores, which confer resilience to harsh environmental conditions. The capability of sporulation is a critical survival mechanism, enabling this organism to persist in various habitats, including those within the gastrointestinal tracts of animals and potentially in soil or other organic-rich environments.↵↵While specific pathogenicity and ecological roles of C. innocuum remain to be fully characterized, its anaerobic lifestyle suggests a potential involvement in nutrient cycling and organic matter decomposition in anaerobic environments. Further research may illuminate its specific contributions to microbial communities, as well as its interactions with other microorganisms and hosts in those habitats. This highlights the importance of studying such anaerobic bacteria in order to understand their ecological and biological significance in various ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium [Clostridium] innocuum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Sporulating Animal 1522 NZ_CP022722.1 Bac0000704 [Clostridium] aminophilum Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium [Clostridium] aminophilum rumen; rumen fluid 1526 FOIL00000000.1 Bac0000705 Eubacterium barkeri Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium barkeri anaerobic soil 1528 FNOU00000000.1 Bac0000706 Clostridium kluyveri str. JZZ "Clostridium kluyveri str. JZZ is a Gram-positive, rod-shaped bacterium that primarily exists as single cells or in pairs. This strain is classified as a chemoorganotroph, utilizing organic compounds as its energy source. C. kluyveri str. JZZ is an obligate anaerobe, thriving in environments devoid of oxygen, which is consistent with its habitat preference for aquatic ecosystems. ↵↵The ability of C. kluyveri str. JZZ to metabolize organic substrates under anaerobic conditions highlights its potential role in biogeochemical cycles within its aquatic environment. By participating in the degradation of organic matter, this microbe may contribute to nutrient cycling and the maintenance of ecosystem health. Given its specialized metabolic capabilities, further investigation into its ecological interactions could reveal insights into the dynamics of microbial communities in anaerobic aquatic systems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium kluyveri Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Aquatic Free living Pairs - Singles 1534 NZ_CP018335.1 Bac0000707 Thomasclavelia ramosa "Thomasclavelia ramosa is a Gram-positive, sporulating rod-shaped bacterium characterized by its anaerobic metabolism and chemoheterotrophic lifestyle. This microbe thrives optimally at a temperature of 37.0°C, suggesting an adaptation to environments that may resemble mammalian body temperatures. The ability to sporulate indicates a potential for resilience in fluctuating environmental conditions, allowing T. ramosa to survive in diverse habitats where it may encounter varying nutrient availability and other stressors.↵↵As a chemoheterotroph, T. ramosa relies on organic compounds as its energy source, which aligns with its anaerobic growth requirements. This metabolic strategy may allow it to occupy niches rich in organic matter, possibly contributing to nutrient cycling in its habitats. The presence of multiple habitats further underscores its ecological versatility, although specific environmental contexts remain to be elucidated.↵↵The unique combination of traits exhibited by Thomasclavelia ramosa hints at its role in anaerobic environments, where it may participate in decomposition processes or symbiotic relationships, potentially influencing the microbial community structure and functioning within those ecosystems. Understanding these dynamics could provide insights into the ecological contributions of this organism, emphasizing the importance of anaerobic microbes in maintaining ecosystem health and stability." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Thomasclavelia ramosa Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Sporulating 1547 QUSJ00000000.1 Bac0000708 Clostridium baratii str. 771-14 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium baratii 1561 JZTY00000000.1 Bac0000709 Clostridium baratii Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium baratii 1561 CZBO00000000.1 Bac0000710 Leifsonia xyli str. SE134 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia xyli 1575 NZ_CP014761.1 Bac0000711 Lactiplantibacillus plantarum "Lactiplantibacillus plantarum is a Gram-positive, rod-shaped bacterium that commonly forms chains and exhibits facultative anaerobic growth. This microbe thrives optimally at a temperature of 25.0°C and is found in a variety of habitats, reflecting its ecological versatility. ↵↵Lactiplantibacillus plantarum is recognized for its role in food fermentation, where it contributes to the production of various fermented products, including vegetables, dairy, and meat. Its ability to grow in the presence or absence of oxygen allows it to adapt to diverse environments, ranging from anaerobic conditions in sealed fermentation vessels to more aerobic conditions found in open food systems.↵↵The adaptability of L. plantarum to multiple habitats suggests a significant ecological role, particularly in the human gut microbiome, where it may contribute to gut health and balance. The presence of this bacterium in fermented foods underscores its importance in human diets, possibly enhancing nutrient absorption and providing probiotic benefits. Understanding the specific conditions that favor the growth and functionality of L. plantarum can inform its application in food science and health-related fields." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1579 UYIX00000000.1 Bac0000712 Lactobacillus acidophilus "Lactobacillus acidophilus is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, is a chemoheterotroph, and can be found in various body sites, including the mouth, gut, and vagina, across different species. As a gram-positive microbe, Lactobacillus acidophilus has a thick peptidoglycan layer in its cell wall, providing it with a distinct purple stain under a microscope. Its rod-shaped morphology allows it to easily colonize and adhere to surfaces, making it a common inhabitant of the human body. As a mesophile, Lactobacillus acidophilus prefers moderate temperatures, typically between 20-45°C, which is ideal for its growth and survival in the human body. As a chemoheterotroph, it relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its metabolic processes. Lactobacillus acidophilus is a facultative anaerobe, capable of growing in both aerobic and anaerobic environments, although it prefers the latter. This adaptability allows it to thrive in various ecosystems, from the oxygen-rich environment of the mouth to the oxygen-poor environment of the gut. Its ability to colonize different body sites has led to its widespread distribution across different species, including humans, animals, and even plants. Lactobacillus acidophilus plays a crucial role in maintaining the balance of the gut microbiome, producing lactic acid and other compounds that help to regulate the pH and prevent the growth of pathogenic microbes. It has been found to have a symbiotic relationship with its hosts, providing essential nutrients and protecting against infections, and is often used as a probiotic in food and dietary supplements to promote gut health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1579 RBHY00000000.1 Bac0000713 Levilactobacillus brevis str. DmCS_003 "Levilactobacillus brevis str. DmCS_003 is a Gram-positive, rod-shaped bacterium that typically exists in chains or as single cells. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for L. brevis str. DmCS_003 is 25.0°C, indicating a preference for moderate temperature habitats.↵↵This species is known to inhabit various ecological niches, suggesting a degree of versatility in its adaptability to different environments. The ability to form chains may facilitate interactions with other microbial species, potentially influencing community dynamics in its habitats. Given its facultative anaerobic nature, L. brevis str. DmCS_003 may play a role in fermentation processes, contributing to the production of lactic acid and other metabolites that can affect the surrounding microbial community and substrate availability.↵↵Understanding the ecological roles of L. brevis str. DmCS_003 can provide insights into its potential applications in food fermentation and biotechnology, where its metabolic capabilities may be harnessed for producing beneficial compounds. The presence of this strain in diverse habitats underscores its ecological importance and adaptability, highlighting the potential for further research into its functional roles within microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 JOKA00000000.1 Bac0000714 Levilactobacillus brevis str. UCCLB521 "Levilactobacillus brevis strain UCCLB521 is a Gram-positive, rod-shaped bacterium that commonly exhibits a chain or single-cell arrangement. This strain is classified as a facultative anaerobe, indicating its capability to thrive in both aerobic and anaerobic environments. It is optimally adapted to a temperature of 25.0°C, suggesting a preference for moderate thermal conditions, which may influence its habitat selection.↵↵The versatility in oxygen requirement allows L. brevis str. UCCLB521 to inhabit a variety of ecological niches, where it may participate in diverse metabolic processes. The ability to grow in multiple habitats underscores its potential role in various fermentation processes, particularly in the production of lactic acid and other metabolites beneficial for food preservation and flavor development.↵↵Given its traits, L. brevis str. UCCLB521 may be particularly significant in the context of food microbiology, where its fermentation capabilities can contribute to the development of specific sensory attributes in fermented food products. Further exploration of this strain's metabolic pathways could provide insights into its functional applications in food technology and bioprocessing." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031210.1 Bac0000715 Levilactobacillus brevis str. UCCLB556 "Levilactobacillus brevis str. UCCLB556 is a Gram-positive, rod-shaped bacterium that can form chains or exist as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is 25.0°C, suggesting a preference for moderate temperatures typical of various natural habitats.↵↵The versatility in its habitat indicates that L. brevis str. UCCLB556 may be found in diverse environments, potentially including fermented foods, plant materials, and other ecological niches conducive to bacterial growth. The ability to form chains may facilitate interactions with other microbial communities, possibly enhancing its survival and metabolic capabilities in fluctuating conditions.↵↵Understanding the traits of L. brevis str. UCCLB556 can provide insights into its role within microbial ecosystems, particularly in fermentation processes where it may contribute to flavor development and preservation. Its facultative anaerobic nature further suggests it could play a significant role in anaerobic fermentation systems, where it may interact with other microorganisms to drive biochemical transformations in various substrates. This adaptability underscores its potential importance in both natural environments and biotechnological applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031174.1 Bac0000716 Levilactobacillus brevis "Levilactobacillus brevis is a Gram-positive, rod-shaped bacterium that commonly arranges itself in chains or occurs as single cells. This microbe is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments, which allows it to inhabit diverse habitats. Its optimal growth temperature is around 25.0°C, indicating a preference for moderate conditions that may be found in various ecological niches.↵↵L. brevis is notable for its ability to ferment carbohydrates, producing lactic acid as a primary metabolic end product. This fermentation capability is indicative of its role in food microbiology, particularly in the production of fermented foods and beverages, where it can contribute to flavor and preservation. Given its adaptability to different oxygen levels and its growth at moderate temperatures, L. brevis can be found in a variety of environments, from plant materials to dairy products.↵↵The ecological versatility of Levilactobacillus brevis suggests its potential importance in various fermentation processes and its role in microbial communities. Its presence in multiple habitats highlights its ability to interact with other microorganisms and contribute to biochemical cycles, particularly in the context of organic matter decomposition and nutrient cycling in the ecosystem." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 JXUF00000000.1 Bac0000717 Levilactobacillus brevis str. D7 "Levilactobacillus brevis strain D7 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or as single cells. This microbe exhibits facultative anaerobic characteristics, allowing it to thrive in both aerobic and anaerobic environments. It is optimally active at a temperature of 25.0°C, suggesting a preference for moderate thermal conditions. ↵↵L. brevis str. D7 has been isolated from diverse habitats, indicating its versatility and potential adaptability to varying ecological niches. This adaptability may contribute to its utility in various fermentation processes, where it could play a role in the production of lactic acid and other metabolites. The ability to exist in multiple environments also raises intriguing questions about its interactions with other microorganisms and its potential contributions to microbial communities. ↵↵Overall, the presence of L. brevis str. D7 in different habitats underscores its ecological significance and highlights the need for further exploration of its metabolic capabilities and roles in natural and industrial fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NVYO00000000.1 Bac0000718 Levilactobacillus brevis str. UCCLBBS124 "Levilactobacillus brevis strain UCCLBBS124 is a Gram-positive, rod-shaped bacterium that exhibits a unique arrangement of cells in both chains and singles. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 25.0°C, suggesting that it may be well-suited for various mesophilic habitats.↵↵The ability of L. brevis str. UCCLBBS124 to adapt to multiple habitats points to its versatility and potential role in diverse ecological niches. Its facultative anaerobic nature may allow it to play significant roles in fermentation processes and interactions within microbial communities. Notably, the arrangement of cells in chains could facilitate enhanced communication and collaboration among cells, potentially influencing its metabolic activities and ecological functions. ↵↵Understanding such traits provides insights into the adaptability and ecological significance of L. brevis str. UCCLBBS124, particularly in environments where fluctuating oxygen levels are present. This adaptability underscores the importance of this strain in both natural ecosystems and potential biotechnological applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031172.1 Bac0000719 Levilactobacillus brevis str. UCCLBBS449 "Levilactobacillus brevis strain UCCLBBS449 is a Gram-positive, rod-shaped bacterium that exhibits a unique arrangement in both singles and chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in varying oxygen conditions, which may contribute to its adaptability in diverse environments. The optimal growth temperature for L. brevis UCCLBBS449 is 25.0 °C, suggesting a preference for moderate temperature habitats.↵↵The ability of L. brevis UCCLBBS449 to inhabit multiple environments highlights its potential versatility in various ecological niches, possibly including fermented foods and various anaerobic systems. Given its facultative anaerobic nature, this strain may play a critical role in fermentation processes, particularly in the production of lactic acid and other metabolites under both aerobic and anaerobic conditions. ↵↵Further exploration of L. brevis UCCLBBS449's metabolic pathways could reveal insights into its functional roles in microbial communities, particularly in relation to food preservation and fermentation. Understanding the ecological implications of this strain may enhance our knowledge of beneficial microorganisms in food science and biotechnology, emphasizing its potential applications in fermentation technology and probiotic development." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031207.1 Bac0000720 Lentilactobacillus buchneri str. ATCC 4005 "Lentilactobacillus buchneri strain ATCC 4005 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain exhibits facultative anaerobic characteristics, enabling it to thrive in both oxygen-rich and oxygen-poor environments. Its habitat is diverse, suggesting an adaptability that allows it to inhabit various ecological niches.↵↵As a member of the Lactobacillus genus, L. buchneri is known for its role in fermentation processes, particularly in the production of lactic acid and other metabolites beneficial for food preservation and flavor enhancement. The strain is often associated with lactic acid fermentation in silage, where it plays a crucial role in improving the nutritional quality and stability of forage by inhibiting undesirable microbial growth.↵↵The ability of L. buchneri to form chains may enhance its survival and competitive fitness in various environments, allowing for effective colonization and persistence in its habitats. This trait, combined with its metabolic flexibility as a facultative anaerobe, positions L. buchneri as a significant player in both natural and engineered fermentation systems, potentially influencing the microbiological balance in its respective ecosystems. Understanding the ecological roles of such microorganisms could provide insights into their applications in agriculture and food production, emphasizing their importance in maintaining microbial health and sustainability." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri Positive Rod Facultative anaerobe Mesophilic Multiple Free living Chains 1581 PUFP00000000.1 Bac0000721 Lentilactobacillus buchneri "Lentilactobacillus buchneri is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism. This microbe is known to inhabit a variety of environments, suggesting its versatility and adaptability to different ecological niches. As a facultative anaerobe, L. buchneri can thrive in both aerobic and anaerobic conditions, which may contribute to its survival in diverse habitats such as fermented foods and the gastrointestinal tracts of animals.↵↵The ability of L. buchneri to grow in varying oxygen levels allows it to play a significant role in fermentation processes, particularly in the production of fermented dairy products or silages. Its presence can influence the flavor, texture, and preservation qualities of these products, underscoring its importance in food microbiology. ↵↵Moreover, the chaining arrangement of cells may enhance its ability to colonize specific niches and form biofilms, which could provide additional resilience against environmental stresses. The ecological role of L. buchneri in diverse habitats highlights its potential contribution to microbial communities and biogeochemical cycles, particularly in anaerobic environments where it may participate in organic matter decomposition and nutrient cycling. Further research on its metabolic capabilities could elucidate its functional significance across various ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri Positive Rod Facultative anaerobe Mesophilic Multiple Free living Chains 1581 SUMV00000000.1 Bac0000722 Lacticaseibacillus casei str. B900021 "Lacticaseibacillus casei strain B900021 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This strain does not undergo sporulation, indicating it relies on vegetative growth under various environmental conditions. Optimal growth occurs at a temperature of approximately 30.0°C, suggesting a preference for moderate temperatures that may be reflective of its specialized habitat.↵↵Lacticaseibacillus casei strains are often associated with various fermented food products and may contribute to the development of flavors and preservation of these foods. The ability to thrive in both aerobic and anaerobic environments allows L. casei str. B900021 to adapt to diverse conditions, which may facilitate its role in fermentation processes. Its nonsporulating nature suggests that the strain is sensitive to environmental stresses that typically induce sporulation in other bacterial species.↵↵Understanding the traits of Lacticaseibacillus casei str. B900021 can provide insights into its potential applications in food biotechnology, particularly in the production of dairy products where it might contribute to probiotic benefits. The specialized habitat preference may also indicate a specific ecological niche that this strain occupies, which could be pivotal for maintaining microbial diversity in fermented environments. Such insights could be useful for developing targeted fermentation strategies that optimize the use of this strain in industry." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains Nonsporulating 1582 LOJN00000000.1 Bac0000723 Lacticaseibacillus casei "Lacticaseibacillus casei is a Gram-positive, rod-shaped bacterium that typically appears in chains and is classified as a facultative anaerobe. This microbe does not form spores, which is characteristic of its genus. Lacticaseibacillus casei thrives optimally at a temperature of 30.0°C, suggesting a preference for moderately warm environments. ↵↵The habitat of Lacticaseibacillus casei is specialized, indicating that it may occupy specific ecological niches where it can effectively utilize available nutrients and interact with other microbial communities. Its facultative anaerobic nature allows it to adapt to varying oxygen levels, which may facilitate its survival in diverse environments, including fermented foods and the gastrointestinal tracts of animals.↵↵This adaptability to both aerobic and anaerobic conditions, combined with its chain-forming arrangement, likely contributes to its resilience and potential roles in fermentation processes. As a member of the lactic acid bacteria group, Lacticaseibacillus casei may play significant roles in food preservation and probiotic applications, highlighting its importance in both microbiological and commercial contexts. Understanding the specialized habitats and metabolic flexibility of Lacticaseibacillus casei provides insights into its ecological interactions and potential applications in biotechnology and health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains Nonsporulating 1582 VBSQ00000000.1 Bac0000724 Lacticaseibacillus casei str. BCRC 80156 "Lacticaseibacillus casei str. BCRC 80156 is a Gram-positive, nonsporulating rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may contribute to its adaptability in specialized habitats. The optimal growth temperature for L. casei str. BCRC 80156 is approximately 30.0°C, suggesting a preference for moderate thermal conditions that may be characteristic of its natural environments.↵↵The unique chain arrangement of cells may enhance cell-to-cell communication and nutrient sharing, a trait that could be advantageous in its specialized habitat. This bacterium is often associated with fermented dairy products and may play a role in the fermentation process, contributing to the development of flavor and texture in food. Additionally, its facultative anaerobic nature allows it to thrive in diverse conditions, potentially aiding in its survival and function in various ecological niches.↵↵Through its metabolic versatility and chain-forming capability, Lacticaseibacillus casei str. BCRC 80156 exemplifies the intricate relationships that bacteria can maintain within specialized ecosystems, highlighting the importance of microbial communities in food production and fermentation." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains Nonsporulating 1582 VBWM00000000.1 Bac0000725 Lacticaseibacillus casei str. LC5 "Lacticaseibacillus casei strain LC5 is a Gram-positive, rod-shaped bacterium that typically forms chains and is characterized as a nonsporulating organism. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both the presence and absence of oxygen. Optimal growth conditions for L. casei LC5 are at a temperature of 30.0°C, which suggests a preference for moderate environmental conditions.↵↵As a member of the Lacticaseibacillus genus, this strain is likely involved in the fermentation processes of various substrates, contributing to the production of lactic acid, which can play a significant role in food preservation and flavor enhancement. The specialized habitat of L. casei LC5 indicates a potential adaptation to specific ecological niches, possibly linked to fermented foods or particular environmental conditions that favor its growth.↵↵The unique combination of its physiological traits and habitat specificity suggests that Lacticaseibacillus casei LC5 may play a crucial role in maintaining microbial balance in its ecosystem, potentially influencing the fermentation dynamics within its niche. Understanding the ecological interactions and metabolic capabilities of this strain may provide insights into its applications in food science and probiotic research." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains Nonsporulating 1582 NZ_CP017065.1 Bac0000726 Weissella confusa "Weissella confusa is a microorganism that thrives under mesophilic conditions, preferring temperatures between 25°C and 40°C. As a member of the group of chemoorganotrophic microorganisms, it derives its energy by breaking down organic compounds, specifically glucose, rather than producing its own food through photosynthesis. This process occurs through the breakdown of glucose into pyruvate, which is then converted into ATP, the molecule responsible for energy production within the cell. Weissella confusa is a Gram-positive bacterium, meaning its cell wall contains a thick layer of peptidoglycan, which stains purple during Gram staining. Its cellular morphology is characterized by a rod-shaped structure, with a length of 0.4-0.7 μm and a width of 0.4-0.6 μm. This microorganism is commonly found in various body sites across different species, including the human gut, oral cavity, and skin. Within the human gut, Weissella confusa plays a crucial role in the fermentation of dietary fiber, producing short-chain fatty acids as a byproduct. Weissella confusa is an obligate anaerobe, meaning it requires a low-oxygen environment to survive and thrive. In the absence of oxygen, it has adapted to utilize alternative metabolic pathways to generate energy. Despite its anaerobic nature, Weissella confusa can tolerate the presence of oxygen, allowing it to coexist in environments with varying levels of oxygen. One notable aspect of Weissella confusa is its ability to produce bioactive compounds, including bacteriocins, which have been shown to exhibit antimicrobial properties. This has significant implications for the development of novel antimicrobial therapies and the study of microbial interactions within complex ecosystems. Weissella confusa's unique characteristics, along with its widespread distribution, make it a fascinating subject for further research, offering insights into the intricate relationships between microorganisms and their environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella confusa Negative Rod Facultative anaerobe dry naturally fermented Greek sausage; fermented butter; Indonesian home-made soya product; sugar cane Chains; Singles 1583 NZ_CP027567.1 Bac0000727 Lactobacillus delbrueckii subsp. bulgaricus "Lactobacillus delbrueckii subsp. bulgaricus is a Gram-positive, rod-shaped bacterium that typically forms chains and is known for its role in the fermentation of dairy products, particularly yogurt. This subspecies thrives optimally at a temperature of 42.0°C, which aligns with the warm conditions often found in dairy fermentation processes. As a facultative anaerobe, L. delbrueckii subsp. bulgaricus can grow in both the presence and absence of oxygen, allowing it to adapt to varying environments within its multiple habitats.↵↵The ability of this microbe to ferment lactose into lactic acid contributes not only to the preservation of food but also to the development of characteristic flavors and textures in fermented dairy products. Its metabolic processes play a vital role in the overall microbiota of dairy environments, influencing the dynamics of microbial communities during fermentation. ↵↵Furthermore, the adaptability of L. delbrueckii subsp. bulgaricus to both aerobic and anaerobic conditions highlights its ecological versatility, permitting it to thrive in diverse fermentation settings while contributing to the health benefits associated with probiotic consumption in humans. This dual capability underscores the significance of this bacterium in both food technology and human gut microbiome interactions, suggesting potential avenues for further research into its applications in health and nutrition." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1585 CZPS00000000.1 Bac0000728 Lactobacillus delbrueckii subsp. bulgaricus str. MN-BM-F01 "Lactobacillus delbrueckii subsp. bulgaricus str. MN-BM-F01 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 42.0°C, indicating its potential adaptation to warmer environments, which may be relevant for its applications in food fermentation processes. ↵↵The habitat of L. delbrueckii subsp. bulgaricus str. MN-BM-F01 is diverse, suggesting that it can occupy various ecological niches, possibly including dairy environments where it is commonly utilized in yogurt production. Its ability to grow under varying oxygen conditions enhances its adaptability and survival in different substrates, allowing for efficient fermentation even in low-oxygen settings.↵↵Furthermore, the specific growth temperature of 42.0°C highlights its preference for thermophilic conditions, which is characteristic of many lactic acid bacteria involved in dairy fermentation. This trait not only supports its role in producing lactic acid, contributing to the preservation and flavor profile of fermented products, but also indicates its potential utility in biotechnological applications where elevated temperatures are beneficial. Overall, the unique combination of these traits positions L. delbrueckii subsp. bulgaricus str. MN-BM-F01 as a valuable microbe in the field of dairy microbiology and fermentation technology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1585 NZ_CP013610.1 Bac0000729 Lactobacillus helveticus str. LH5 "Lactobacillus helveticus str. LH5 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which may contribute to its versatility in various habitats. Lactobacillus helveticus is commonly associated with dairy fermentation processes, suggesting that LH5 may play a role in the production of fermented dairy products. ↵↵The ability of LH5 to adapt to multiple habitats underscores its ecological significance, as it can exploit different environmental conditions to sustain growth and metabolic activity. The formation of chains in cell arrangement may enhance its ability to colonize surfaces within its habitat, facilitating interactions with other microbial communities and contributing to the overall dynamics of microbial ecosystems.↵↵In conclusion, the unique combination of traits exhibited by Lactobacillus helveticus str. LH5, particularly its facultative anaerobic nature and chain formation, highlights its potential adaptability and ecological roles in fermentation processes and microbial interactions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 NZ_CP019583.1 Bac0000730 Lactobacillus helveticus "Lactobacillus helveticus is a species of bacteria that thrives in a temperature range of 20-40°C, classified as a mesophile. Metabolically, it is a chemoheterotroph, meaning it obtains its energy by oxidizing organic compounds and reducing inorganic substances. Specifically, L. helveticus produces its energy through the process of fermentation, utilizing carbohydrates and proteins as its energy source. As a gram-positive bacterium, L. helveticus has a thick peptidoglycan cell wall, characteristic of the gram-positive staining reaction. Its rod-shaped morphology allows it to colonize various body sites, including the gut, skin, and oral cavity. In fact, L. helveticus is part of the normal microbiota in the human gut, where it plays a role in maintaining a healthy balance of the gut flora. L. helveticus is an oxygen-tolerant microorganism, classified as a facultative anaerobe, which means it can survive in the presence of oxygen but can also thrive in low-oxygen environments. This adaptability allows it to colonize various niches within the human body. In addition to its importance in the human gut, L. helveticus has been used in the production of fermented foods such as cheese, yogurt, and sauerkraut, where it contributes to the development of flavor and texture. Research on L. helveticus has also revealed its potential in alleviating symptoms of irritable bowel syndrome (IBS) and improving lactose tolerance. Furthermore, its antimicrobial properties have been explored as a potential agent against various pathogenic bacteria, including Clostridium difficile and Helicobacter pylori. In summary, Lactobacillus helveticus is a mesophilic, chemoheterotrophic, gram-positive, rod-shaped bacterium that is adapted to survive in various environments with different oxygen levels. Its ability to ferment carbohydrates and thrive in the human gut, as well as its potential applications in food and medicine, make it a significant microorganism worthy of further study." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 CP031018.1 Bac0000731 Lactiplantibacillus pentosus str. DSM 20314 "Lactiplantibacillus pentosus str. DSM 20314 is a Gram-positive, non-sporulating rod-shaped bacterium that exhibits facultative anaerobic growth. This strain thrives optimally at a temperature of 30.0°C and is classified as a chemoheterotroph, utilizing organic compounds for energy. L. pentosus is known to inhabit diverse environments, suggesting its adaptability to various ecological niches.↵↵The ability of L. pentosus str. DSM 20314 to grow in both aerobic and anaerobic conditions allows it to exploit a wide range of substrates, which may be advantageous in competitive microbial communities. This metabolic flexibility, combined with its growth at moderate temperatures, indicates that L. pentosus could play a significant role in fermentation processes, potentially contributing to the production of various fermented foods and beverages.↵↵Given its diverse habitat and metabolic capabilities, L. pentosus str. DSM 20314 may also interact with other microorganisms in its environment, influencing microbial dynamics and contributing to the overall ecological balance. This adaptability underscores the potential utility of L. pentosus in biotechnological applications, particularly in the food industry, where its fermentation properties could enhance product quality and safety." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus pentosus Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1589 NZ_CP032758.1 Bac0000732 Lactiplantibacillus pentosus "Lactiplantibacillus pentosus is a Gram-positive, nonsporulating, rod-shaped bacterium that exhibits facultative anaerobic respiration and thrives optimally at a temperature of 30.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, allowing it to inhabit a range of environments, which contributes to its versatility in various ecological niches.↵↵The ability of Lactiplantibacillus pentosus to grow in both aerobic and anaerobic conditions suggests it can adapt to differing oxygen levels, potentially allowing it to colonize diverse habitats, including fermented foods and other organic-rich environments. Its nonsporulating nature indicates that it does not form spores as a survival mechanism, which may limit its resilience in extreme conditions; however, its metabolic adaptability likely compensates for this trait.↵↵This bacterium is often found in association with plant material and plays a role in the fermentation processes of various food products. Its presence in these ecosystems not only aids in the preservation of food items through lactic acid production but also contributes to the development of unique flavors and textures in fermented products. Understanding the ecological role of Lactiplantibacillus pentosus highlights its significance in food microbiology and fermentation technology, illustrating the intricate relationships between microorganisms and their environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus pentosus Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1589 PVNZ00000000.1 Bac0000733 Lactiplantibacillus pentosus str. BGM48 "Lactiplantibacillus pentosus str. BGM48 is a Gram-positive, nonsporulating rod-shaped bacterium that demonstrates facultative anaerobic metabolism and functions as a chemoheterotroph. This strain thrives optimally at a temperature of 30°C and can utilize a variety of organic compounds as energy sources. Its facultative anaerobic nature allows it to grow in both oxygen-rich and oxygen-depleted environments, suggesting versatility in its habitat preferences, which range across multiple ecological niches.↵↵The ability of L. pentosus str. BGM48 to adapt to varying oxygen levels may provide insights into its role in fermentation processes, particularly in food production and preservation, where oxygen levels can fluctuate. This adaptability also highlights the potential for its application in biotechnological contexts, such as the development of starter cultures for fermented foods. The strain's characteristics indicate a capability for contributing to the microbiota of diverse environments, potentially influencing the fermentation profiles of various substrates in which it is involved." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus pentosus Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1589 NZ_CP016494.1 Bac0000734 Lactiplantibacillus plantarum str. LQ80 "Lactiplantibacillus plantarum strain LQ80 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives as a facultative anaerobe, suggesting its ability to adapt to varying oxygen levels, which may enhance its survival in diverse environments. It exhibits optimal growth at 25.0°C, indicating a preference for moderate temperatures commonly found in many natural and host-associated habitats.↵↵As a member of the Lactobacillus genus, L. plantarum strain LQ80 is likely to play a significant role in fermentation processes and may contribute to the microbiota of its host. Its host-associated habitat indicates that it may reside in the gastrointestinal tract of animals, including humans, where it could participate in various metabolic functions and contribute to gut health.↵↵The capacity of L. plantarum strain LQ80 to exist in chains may facilitate its interactions with other microbial species, potentially enhancing its role in microbial community dynamics. This trait could influence its ability to form biofilms or contribute to nutrient cycling within the host environment. Overall, L. plantarum strain LQ80 exemplifies the adaptability and ecological significance of lactic acid bacteria in host-associated ecosystems, highlighting their potential for beneficial interactions within complex microbiomes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains 1590 NZ_CP028981.1 Bac0000735 Lactiplantibacillus plantarum str. MPL16 "Lactiplantibacillus plantarum strain MPL16 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This microbial strain thrives optimally at a temperature of 25.0°C and is primarily associated with host environments, indicating a potential symbiotic relationship with its host organisms.↵↵As a member of the Lactiplantibacillus genus, strain MPL16 is likely involved in various fermentation processes and may contribute to the production of lactic acid, a key metabolic product in many fermentation pathways. The ability to grow in both aerobic and anaerobic conditions provides this strain with a versatile metabolism, allowing it to adapt to varying oxygen levels in its environment.↵↵The host-associated habitat of Lactiplantibacillus plantarum MPL16 suggests a role in the gut microbiota or other biological niches where it can interact with other microorganisms and the host’s immune system. This interaction may support the maintenance of gut health, although specific functional roles in host health remain to be elucidated.↵↵Overall, the characteristics of Lactiplantibacillus plantarum MPL16 highlight its adaptability and potential significance in ecological contexts where it may influence fermentation processes and contribute to the stability of microbial communities within host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains 1590 LUHN00000000.1 Bac0000736 Lactiplantibacillus plantarum str. Nizo2891 "Lactiplantibacillus plantarum str. Nizo2891 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It is optimally active at a temperature of 25.0°C, suggesting a preference for moderate thermal conditions typically found in its natural habitat.↵↵Lactiplantibacillus plantarum species are well-known for their presence in various fermented foods and are frequently associated with host organisms, emphasizing their potential role in symbiotic relationships within microbial communities. This particular strain, Nizo2891, is host-associated, which indicates that it may play a specific role in the microbiota of its host, contributing to the overall health or metabolic functions of the host organism.↵↵The facultative anaerobic nature of Nizo2891 suggests an adaptability that might enable it to survive in fluctuating environmental conditions, including variations in oxygen availability. This versatility could be advantageous for its survival and functionality in diverse ecological niches, particularly those associated with fermentation processes or digestive systems of host species. Understanding the specific interactions and contributions of Lactiplantibacillus plantarum str. Nizo2891 within host environments could provide further insights into its potential applications in food science and probiotics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains 1590 LUXG00000000.1 Bac0000737 Lactobacillus sp. "Lactobacillus sp. is a Gram-positive, rod-shaped bacterium commonly found in various habitats, including the gut, liver, lungs, and vaginal microbiota. This genus is well known for its role in the fermentation of sugars into lactic acid, which contributes to its presence in fermented foods and its potential beneficial effects on human health. Lactobacillus species are generally recognized for their ability to maintain a balanced microflora, which can inhibit the growth of pathogenic organisms and support immune function.↵↵In the gut, Lactobacillus sp. contributes to digestion and nutrient absorption while playing a crucial role in the maintenance of gut health. Its presence is associated with a healthy microbiome, which may guard against gastrointestinal disorders. In the vaginal environment, Lactobacillus sp. is particularly important for preventing infections by maintaining an acidic pH, thus inhibiting the growth of pathogens.↵↵Furthermore, the versatility of Lactobacillus sp. to inhabit diverse environments such as the liver and lungs suggests a broader ecological role that extends beyond its traditional associations. This adaptability may indicate its potential involvement in various physiological processes, possibly linking gut health with systemic effects in other body sites. Understanding the specific characteristics and metabolic capabilities of Lactobacillus sp. can pave the way for future research into its applications in probiotics and therapeutic interventions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. positive Rod gut; liver; lungs; vaginal 1591 QOUQ00000000.1 Bac0000738 Lactobacillus gasseri str. JG141 "Lactobacillus gasseri str. JG141 is a Gram-positive, nonsporulating rod-shaped bacterium that typically arranges itself in chains or as single cells. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 25.0°C, indicating a preference for moderate conditions that may reflect its adaptation to host-associated habitats.↵↵Lactobacillus gasseri is known to be part of the normal microbiota in various host organisms, particularly in the gastrointestinal tract. The presence of this strain in host-associated environments suggests its potential role in maintaining microbial balance and contributing to host health. Given its characteristics, L. gasseri str. JG141 may be involved in fermentation processes, producing metabolites that can benefit the host, such as short-chain fatty acids. These metabolites can influence gut health and immune responses, highlighting the ecological significance of this strain within its native habitat. Understanding the specific interactions and contributions of L. gasseri str. JG141 within its ecosystem could provide insights into its functionality and potential applications in probiotic therapies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains - Singles Nonsporulating 1596 PQWW00000000.1 Bac0000739 Lacticaseibacillus paracasei str. DPC2071 "Lacticaseibacillus paracasei strain DPC2071 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to environments with varying oxygen levels. ↵↵Lacticaseibacillus paracasei is known to inhabit multiple environments, which suggests a versatile ecological role. Its ability to grow in the presence of oxygen as well as in anaerobic conditions may facilitate its survival and functionality in diverse habitats ranging from fermented foods to the gastrointestinal tracts of various organisms. This adaptability not only highlights its potential importance in food fermentation processes but also suggests a role in the gut microbiome, where it might contribute to the maintenance of gut health and the modulation of host immune responses.↵↵The presence of Lacticaseibacillus paracasei DPC2071 in diverse habitats underscores its potential significance in microbial ecosystems, possibly influencing nutrient cycling and microbial community dynamics in its environments. Further research could elucidate its specific contributions to these ecological interactions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 NCSN00000000.1 Bac0000740 Lacticaseibacillus paracasei "Lacticaseibacillus paracasei is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic respiration. This microbe thrives optimally at a temperature of 30.0°C and is found in diverse habitats. As a member of the lactic acid bacteria group, Lacticaseibacillus paracasei is known for its role in fermentation processes, which are critical to various food production methods, including dairy fermentation.↵↵The ability of Lacticaseibacillus paracasei to grow under both aerobic and anaerobic conditions allows it to adapt to different environments, potentially contributing to its widespread presence in fermented foods and the gastrointestinal tracts of mammals. While the specific ecological niches occupied by Lacticaseibacillus paracasei can vary, its versatility in oxygen utilization suggests it may play a significant role in maintaining microbial balance in its habitats.↵↵Moreover, the chain formation characteristic of Lacticaseibacillus paracasei may enhance its survival and competitive abilities in complex microbial communities, facilitating its establishment in diverse environments. This trait may also influence its interactions with other microorganisms, highlighting the importance of studying this bacterium in the context of microbial ecology and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 LKFC00000000.1 Bac0000741 Lacticaseibacillus paracasei str. LOCK919 "Lacticaseibacillus paracasei strain LOCK919 is a Gram-positive, rod-shaped bacterium that typically forms chains. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, indicating its versatility in different habitats. It exhibits optimal growth at a temperature of 30.0°C, suggesting a preference for moderate conditions that may align with its ecological niches.↵↵This strain is part of the diverse genus Lacticaseibacillus, known for its role in fermentation processes and potential applications in food production and probiotics. The ability to form chains may enhance its stability and functional properties in fermented products. Given its facultative anaerobic nature, L. paracasei LOCK919 may play a significant role in maintaining microbial balance in its habitats, adapting to shifts in oxygen availability and contributing to various metabolic processes.↵↵The ecological significance of Lacticaseibacillus paracasei LOCK919 lies in its adaptability, which may allow it to inhabit a wide range of environments, including fermented foods and the gastrointestinal tracts of animals. This adaptability underscores its potential utility in biotechnological applications, particularly in the development of functional foods and probiotics aimed at promoting gut health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 NC_021721.1 Bac0000742 Lacticaseibacillus paracasei str. SRCM103299 "Lacticaseibacillus paracasei strain SRCM103299 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 30.0°C, indicating a preference for mesophilic conditions. ↵↵Lacticaseibacillus paracasei is known to inhabit multiple environments, which may include fermented dairy products, the gastrointestinal tracts of animals, and potentially other ecological niches. The ability to form chains may enhance its competitive advantage in certain habitats by increasing the likelihood of establishing colonies and facilitating interactions with other microorganisms.↵↵This strain is of interest in microbiological research and potential applications in food science and probiotics due to its metabolic flexibility and adaptability to varying oxygen levels. Further studies could elucidate its role in specific ecosystems, particularly in relation to its interactions with other microbial communities and its contributions to fermentation processes in diverse habitats." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 NZ_CP035564.1 Bac0000743 Lacticaseibacillus paracasei str. UCD174 "Lacticaseibacillus paracasei str. UCD174 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in a variety of habitats. This strain exhibits facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 30.0°C, indicating a preference for moderate temperatures that may be encountered in diverse ecological niches.↵↵The ability of Lacticaseibacillus paracasei str. UCD174 to adapt to different oxygen conditions not only enhances its survival across various environments but also points to its potential role in fermentation processes. This adaptability is particularly significant in food production, where lactic acid bacteria are commonly employed for their probiotic properties and contributions to flavor development.↵↵Given its chain-forming characteristic, Lacticaseibacillus paracasei str. UCD174 may also influence the structural and functional dynamics within microbial communities, potentially affecting fermentation efficiency and the overall microbial composition in its habitat. Further studies could elucidate its interactions with other microorganisms and its contributions to ecosystem functions, particularly in environments where lactic acid bacteria play a critical role in organic matter decomposition and nutrient cycling." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 AFYQ00000000.1 Bac0000744 Limosilactobacillus reuteri str. MD IIE-43 "Limosilactobacillus reuteri strain MD IIE-43 is a Gram-positive, rod-shaped bacterium known for its ability to form chains. This facultative anaerobe can thrive in multiple habitats, indicating its versatility in adapting to various environmental conditions. The presence of L. reuteri in diverse ecosystems suggests that it may play a significant role in microbial communities, potentially contributing to the fermentation processes and overall microbial balance in those environments. ↵↵L. reuteri is recognized for its probiotic properties, which may be relevant in promoting gut health in hosts. The strain's ability to grow in both aerobic and anaerobic conditions highlights its metabolic flexibility, allowing it to utilize different substrates depending on the availability of oxygen. This adaptability can be a crucial factor in its survival and function within complex microbial ecosystems. ↵↵Furthermore, the chain arrangement of L. reuteri cells may influence its interactions with other microorganisms and host cells, potentially impacting its ecological niche and functional roles in biotechnological applications or fermentation processes. Understanding the specific habitats of strain MD IIE-43 could provide insights into its ecological significance, including its contributions to nutrient cycling and microbial dynamics in diverse environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 NZ_CP137611.1 Bac0000745 Limosilactobacillus reuteri str. ZLR003 "Limosilactobacillus reuteri strain ZLR003 is a Gram-positive, rod-shaped bacterium that typically forms chains. This organism is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The strain ZLR003 is found in diverse habitats, which may include various ecological niches where it contributes to microbial communities.↵↵The facultative anaerobic nature of L. reuteri ZLR003 suggests that it plays a versatile role in its habitat, potentially adapting to fluctuating oxygen levels. This adaptability may enable the strain to coexist with other microbial populations, influencing the dynamics of microbial interactions and nutrient cycling within its environment. Furthermore, the presence of this strain in multiple habitats highlights its ecological significance and potential applications in fermentation processes or probiotic formulations, where its stability and functional capacity can be beneficial. Understanding the specific environmental conditions that favor its growth and activity could provide insights into its ecological roles and applications in various biotechnological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 NZ_CP014786.1 Bac0000746 Limosilactobacillus reuteri "Limosilactobacillus reuteri is a Gram-positive, rod-shaped bacterium that typically forms chains. This facultative anaerobe is capable of thriving in diverse habitats, demonstrating its adaptability to various environmental conditions. As a member of the Lactobacillaceae family, L. reuteri is notable for its role in fermentative processes, contributing to the production of lactic acid from carbohydrates.↵↵The species has garnered attention for its potential beneficial effects in various applications, particularly in the fields of probiotics and gut health. Its adaptability allows it to inhabit different niches, which may include the gastrointestinal tracts of humans and animals, as well as fermented foods. The ability to grow in both aerobic and anaerobic conditions enhances its survival in fluctuating environments, facilitating its use in probiotic formulations.↵↵Research indicates that L. reuteri may possess unique metabolic capabilities, enabling it to utilize a range of substrates for growth. This versatility not only supports its survival in distinct environments but also suggests potential interactions with other microbial communities. Furthermore, the presence of L. reuteri in the gut microbiota has been associated with various health benefits, reinforcing the importance of understanding its ecological role and functional properties within microbial ecosystems. Overall, Limosilactobacillus reuteri exemplifies how microbial diversity can influence health and ecosystem dynamics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 MIMV00000000.1 Bac0000747 Limosilactobacillus reuteri str. P43 "Limosilactobacillus reuteri strain P43 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. This strain is part of a diverse habitat spectrum, indicating its adaptability to various ecological niches. ↵↵As a member of the Lactobacillaceae family, L. reuteri is commonly associated with fermentation processes and is often found in the gastrointestinal tracts of humans and animals, as well as in fermented food products. Its ability to grow in the presence or absence of oxygen suggests a metabolic versatility that may facilitate its survival in fluctuating environmental conditions.↵↵The chain formation characteristic of strain P43 may enhance its stability in certain environments, potentially contributing to its ecological resilience. This trait could also facilitate interactions with other microbial species within its habitat, possibly influencing community dynamics in complex microbial ecosystems. ↵↵Furthermore, the presence of L. reuteri in multiple habitats underscores its potential role in microbial succession and its importance in maintaining microbial homeostasis. Overall, the adaptability and unique structural properties of Limosilactobacillus reuteri strain P43 highlight its significance in both natural and engineered microbial environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 MCNS00000000.1 Bac0000748 Latilactobacillus sakei str. WiKim0073 "Latilactobacillus sakei str. WiKim0073 is a Gram-positive, rod-shaped bacterium recognized for its facultative anaerobic metabolism, allowing it to thrive in various environments. This trait enables the organism to adapt to both aerobic and anaerobic conditions, which is advantageous in diverse habitats. ↵↵The strain is part of the Lactobacillus genus, commonly associated with the fermentation processes in food production, particularly in meat and vegetable preservation. Its ability to survive in multiple habitats suggests a versatile ecological niche, potentially contributing to food microbiomes and influencing fermentation dynamics. ↵↵The facultative anaerobic characteristic of Latilactobacillus sakei str. WiKim0073 not only aids in its survival but also suggests a role in maintaining the balance of microbial communities, particularly in environments where oxygen levels fluctuate. This adaptability may enhance its utility in biotechnological applications, such as probiotics or fermentation starters, and highlights the significance of understanding microbial resilience in varied ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1599 NZ_CP025205.1 Bac0000749 Latilactobacillus sakei "Latilactobacillus sakei is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments. This versatile microbe inhabits multiple ecological niches, suggesting a broad adaptability to varying environmental conditions. ↵↵L. sakei is particularly notable for its role in food fermentation, where it contributes to the production of lactic acid, influencing the flavor and preservation of various food products. Its ability to ferment sugars, coupled with its resilience in diverse habitats, underscores its importance in both industrial and natural fermentation processes.↵↵The facultative anaerobic nature of L. sakei allows it to switch between aerobic respiration and fermentation, enabling it to exploit different metabolic pathways based on oxygen availability. This trait not only enhances its survival in fluctuating environments but also supports its role in microbial communities, where it can interact with other microorganisms to influence fermentation dynamics.↵↵In addition to its functional attributes in food systems, the presence of L. sakei in various habitats may also be indicative of its ecological versatility, suggesting potential interactions with other microbial taxa in complex ecosystems. This adaptability positions L. sakei as a significant player in both ecological balance and biotechnological applications, making it a subject of interest in studies on microbial diversity and fermentation ecology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1599 NZ_LT960781.1 Bac0000750 Lactobacillus acetotolerans str. NBRC 13120 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acetotolerans 1600 NZ_AP014808.1 Bac0000751 Ligilactobacillus agilis str. La3 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus agilis 1601 NZ_CP034229.1 Bac0000752 Lactobacillus amylovorus str. 30SC "Lactobacillus amylovorus strain 30SC is a Gram-positive, non-sporulating rod-shaped bacterium that typically forms chains and is classified as an anaerobe. This strain is part of the diverse Lactobacillus genus, which is renowned for its role in various fermentation processes. The presence of multiple habitats suggests a versatile adaptation to different environments, which may include both plant and animal sources, although specific ecological niches are not defined here.↵↵As a strictly anaerobic organism, L. amylovorus 30SC thrives in environments devoid of oxygen, which aligns with its potential roles in anaerobic fermentation processes. This characteristic may contribute to its utility in food production, particularly in the fermentation of dairy products and plant-based substrates where anaerobic conditions prevail. ↵↵The ability of Lactobacillus species to metabolize carbohydrates, including starches, is a notable trait, which may enhance its ecological function in carbohydrate-rich environments. As such, L. amylovorus 30SC may participate in the breakdown of complex carbohydrates, contributing to the overall microbial community dynamics and nutrient cycling in its habitats. Understanding these traits can provide insights into the strain's potential applications in biotechnology and food science, particularly in developing probiotic formulations and improving fermentation efficiency." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains Nonsporulating 1604 NC_015214.1 Bac0000753 Lactobacillus amylovorus str. PMRA3 "Lactobacillus amylovorus strain PMRA3 is a Gram-positive, nonsporulating rod-shaped bacterium that typically arranges itself in chains. This strain is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. The ability to grow in multiple habitats suggests that L. amylovorus str. PMRA3 may play versatile roles within various ecosystems, particularly those that are anaerobic in nature. ↵↵Lactobacillus species, including L. amylovorus, are known for their association with fermentation processes, particularly in the dairy and plant-based food industries. The specific traits of strain PMRA3 may contribute to its utility in biotechnological applications, such as the production of fermented foods or probiotics. The adaptability of this strain to multiple habitats under anaerobic conditions could provide insights into its potential roles in nutrient cycling or in the maintenance of microbial diversity within its ecological niches. ↵↵Understanding the specific metabolic pathways and interactions of L. amylovorus str. PMRA3 in its natural environments could enhance our knowledge of microbial ecology and inform strategies for harnessing beneficial microbes in food production and preservation." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains Nonsporulating 1604 NZ_CP029754.1 Bac0000754 Companilactobacillus farciminis str. ATCC 29644 "Companilactobacillus farciminis str. ATCC 29644 is a rod-shaped, nonsporulating bacterium that thrives optimally at 37.0°C. As a chemoheterotroph, it derives its energy from organic compounds, showcasing metabolic versatility suited for various ecological niches. This strain exhibits facultative anaerobic properties, allowing it to adapt to both aerobic and anaerobic environments, which may contribute to its survival in diverse habitats.↵↵The ability of C. farciminis to occupy multiple habitats indicates a broad ecological adaptability, potentially facilitating its role in different microbiomes. This adaptability may be particularly significant in contexts such as fermentation processes, where it could contribute to the production of fermented foods or beverages. Understanding the environmental flexibility and metabolic capabilities of C. farciminis may provide insights into its potential applications in biotechnology and food science, where it could be harnessed for beneficial fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus farciminis Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1612 PUFN00000000.1 Bac0000755 Companilactobacillus farciminis str. CNCM-I-3699-R "Companilactobacillus farciminis str. CNCM-I-3699-R is a nonsporulating, rod-shaped bacterium characterized as a facultative anaerobe and a chemoheterotroph, with an optimal growth temperature of 37.0°C. This strain is capable of utilizing a variety of organic compounds as energy sources, which enables it to thrive in diverse habitats. ↵↵The facultative anaerobic nature of C. farciminis str. CNCM-I-3699-R allows it to adapt to varying oxygen levels, making it well-suited for environments where oxygen may be fluctuating or limited. This adaptability suggests potential roles in fermentation processes or in symbiotic relationships within mixed microbial communities. ↵↵Given its broad habitat range and metabolic versatility, C. farciminis str. CNCM-I-3699-R may contribute to ecological processes such as organic matter decomposition or nutrient cycling, particularly in environments where organic substrates are abundant. Further research into its specific interactions and contributions within its habitats could enhance understanding of its ecological roles." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus farciminis Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1612 CP012177.1 Bac0000756 Limosilactobacillus fermentum "Lactobacillus reuteri is a microorganism that thrives in mesophilic conditions, preferring temperatures between 25°C to 40°C. It is a chemoheterotroph, utilizing organic compounds as its energy source and reducing them to produce ATP through fermentation. This microbe is capable of producing lactate, ethanol, and carbon dioxide as byproducts of its energy production process. Lactobacillus reuteri is a gram-positive bacterium, characterized by its thick peptidoglycan layer. Its rod-shaped morphology allows it to thrive in a variety of environments, including the gastrointestinal tract, vagina, and urogenital tract of humans and animals. This microbe is a facultative anaerobe, capable of surviving in the presence or absence of oxygen. In fact, it can tolerate a wide range of oxygen levels, making it well-adapted to environments with fluctuating oxygen availability. Lactobacillus reuteri is a ubiquitous microbe, found in all body sites of humans and animals, including the oral cavity, gut, and skin. Its ability to colonize and thrive in these environments makes it an important component of the microbiome. As a key member of the human microbiome, Lactobacillus reuteri plays a vital role in maintaining homeostasis and preventing disease. It produces antimicrobial compounds, such as reutericin, which helps to inhibit the growth of pathogenic bacteria. Additionally, it produces antimicrobial peptides, like purotoxin, which aids in the defense against antibiotic-resistant bacteria. In recent years, research has focused on the potential therapeutic applications of Lactobacillus reuteri, particularly in the treatment of gastrointestinal disorders, such as irritable bowel syndrome (IBS). Studies have shown that supplementation with L. reuteri strains can improve symptoms of IBS, including reduced abdominal pain and improved bowel function. Further research is underway to explore the full range of benefits and potential therapeutic uses of this remarkable microbe." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 PGGI00000000.1 Bac0000757 Limosilactobacillus fermentum str. MD IIE-4657 "Limosilactobacillus fermentum strain MD IIE-4657 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is known to inhabit a variety of habitats, which may include fermented foods, the gastrointestinal tracts of animals, and other environments conducive to lactic acid bacteria.↵↵The ability of L. fermentum MD IIE-4657 to grow in diverse habitats underscores its ecological versatility and potential contributions to fermentation processes and gut microbiota dynamics. This adaptability may enable the strain to play a role in the fermentation of various substrates, potentially influencing flavor profiles and nutritional qualities in food products. Furthermore, its presence in multiple habitats suggests it may interact with various microbial communities, contributing to microbial diversity and stability in those ecosystems. Understanding the specific ecological roles of L. fermentum MD IIE-4657 could provide insights into its applications in food technology and microbiome research." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 PTLW00000000.1 Bac0000758 Limosilactobacillus fermentum str. NCC2970 "Limosilactobacillus fermentum str. NCC2970 is a Gram-positive, rod-shaped bacterium that typically forms chains and demonstrates facultative anaerobic growth. This strain is part of a diverse habitat range, indicating its adaptability to various environmental conditions.↵↵As a facultative anaerobe, L. fermentum str. NCC2970 can thrive in both the presence and absence of oxygen, allowing it to occupy niches where oxygen availability fluctuates. This metabolic versatility is significant for its survival in complex ecosystems, such as the gastrointestinal tracts of animals and fermented food products. ↵↵The chain formation characteristic of this strain may enhance its colonization abilities and facilitate interactions with other microbial communities. Such traits are critical for understanding its role in fermentation processes or potential contributions to gut microbiota dynamics. Overall, Limosilactobacillus fermentum str. NCC2970 exemplifies the adaptive strategies employed by lactic acid bacteria in varied habitats, potentially influencing fermentation and microbial community structure in its environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 NZ_CP017151.1 Bac0000759 Limosilactobacillus fermentum str. SNUV175 "Limosilactobacillus fermentum str. SNUV175 is a Gram-positive, rod-shaped bacterium that typically forms chains. This facultative anaerobe demonstrates versatility in its habitat, being found in multiple environments. As a member of the genus Limosilactobacillus, this strain is likely involved in various fermentation processes, contributing to the production of lactic acid and other metabolites that can influence the microbial composition of its surroundings.↵↵The ability of L. fermentum str. SNUV175 to thrive in both aerobic and anaerobic conditions allows it to adapt to diverse ecological niches, potentially including fermented foods and the gastrointestinal tracts of animals. Its rod shape and chain arrangement may facilitate specific interactions with other microorganisms, influencing community dynamics within its habitat.↵↵This strain’s metabolic capabilities could play a significant role in the fermentation of carbohydrates, leading to the enhancement of flavor and preservation in food products. Additionally, the presence of such lactic acid bacteria in various ecological niches may contribute to the establishment of a healthy microbiota, underscoring their potential importance in both food preservation and gut health. Further exploration of Limosilactobacillus fermentum str. SNUV175 could provide insights into its functional roles in microbial ecosystems and its applications in biotechnology and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 NZ_CP019033.1 Bac0000760 Limosilactobacillus fermentum str. SRCM103285 "Limosilactobacillus fermentum str. SRCM103285 is a Gram-positive, rod-shaped bacterium that typically forms chains. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, reflecting its versatility in adapting to various habitats. Its presence in multiple environments suggests a broad ecological niche, allowing it to interact with diverse microbial communities and substrates.↵↵The ability of L. fermentum to grow under varying oxygen conditions may enable it to play significant roles in fermentation processes, potentially contributing to the production of lactic acid and other metabolites beneficial for food preservation and flavor enhancement. Additionally, its chain arrangement may influence its interactions with other microorganisms and its overall metabolic capabilities.↵↵The ecological implications of Limosilactobacillus fermentum str. SRCM103285's traits highlight its potential importance in fermentation ecosystems, where it may contribute to the stability and functionality of microbial consortia. Understanding such organisms is crucial for harnessing their capabilities in industrial and biotechnological applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 NZ_CP035054.1 Bac0000761 Fructilactobacillus fructivorans str. DmCS_002 "Fructilactobacillus fructivorans str. DmCS_002 is a Gram-positive, rod-shaped bacterium that exhibits chemoheterotrophic metabolic capabilities and is nonsporulating. This strain thrives optimally at a temperature of 30.0 °C, which suggests a preference for moderate environmental conditions. Isolated from dairy sources, it may play a role in the fermentation processes associated with dairy products, contributing to flavor development and texture.↵↵The nonsporulating nature of F. fructivorans str. DmCS_002 indicates a reliance on stable environmental conditions for survival, which aligns with its habitat preference. Given its classification as a dairy isolate, it is likely involved in the complex microbial communities found in various dairy environments, potentially influencing the microbiota balance and contributing to the overall dynamics of dairy fermentation.↵↵As a chemoheterotroph, this bacterium utilizes organic compounds as an energy source, which may further influence the composition of metabolites in dairy products. Understanding the role and behavior of Fructilactobacillus fructivorans str. DmCS_002 in its native habitat could provide insights into its contributions to dairy fermentation, including its potential impacts on the flavor profiles and preservation of dairy products. This highlights the importance of such microbes in both food science and microbial ecology, particularly in the context of sustainable dairy production practices." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus fructivorans Positive Rod No 1 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1614 JOJZ00000000.1 Bac0000762 Weissella kandleri "Weissella kandleri is a Gram-positive, rod-shaped bacterium characterized by its diverse cell arrangements, which can be found as singles, pairs, or in chains. This microbe has been identified in unique habitats, including desert springs and dry naturally fermented Greek sausage, suggesting its adaptability to extreme environments and specific fermentation processes. ↵↵The presence of Weissella kandleri in fermented foods indicates its potential role in food microbiology, particularly in the development of flavor and preservation of such products. The bacterium's ability to thrive in arid conditions may be linked to specialized metabolic pathways that allow it to efficiently utilize limited resources. ↵↵Further research into Weissella kandleri could provide insights into its functional contributions to fermentation and its ecological role in both natural and engineered environments. Understanding its interactions in fermented products may also shed light on the broader implications of microbial diversity in food systems and ecosystem health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella kandleri positive Rod desert spring; dry naturally fermented Greek sausage Chains; Pairs; Singles 1616 JQBP00000000.1 Bac0000763 Liquorilactobacillus mali "Liquorilactobacillus mali is a rod-shaped, nonsporulating bacterium that thrives as a chemoheterotroph, utilizing organic compounds for energy. This microbe exhibits optimal growth at a temperature of 30.0°C, suggesting a preference for moderate thermal conditions, which may reflect its adaptation to specific environments. Isolated from dairy products, L. mali likely plays a role in the fermentation processes characteristic of dairy ecosystems, where it may contribute to flavor development and preservation through lactic acid production.↵↵Given its nonsporulating nature, L. mali's survival strategy is likely geared towards thriving in nutrient-rich environments, such as those found in dairy matrices, rather than relying on sporulation for resilience under adverse conditions. This could indicate a stable ecological niche within the dairy microbiota, where consistent temperature and nutrient availability support its growth and metabolic activities.↵↵Further investigation into the interactions of L. mali within dairy environments could provide insights into its potential benefits for food preservation and safety, as well as its role in the complex microbial communities present in fermented dairy products. The presence of L. mali in these habitats underscores the importance of lactic acid bacteria in the dairy industry, where they contribute to both the sensory and textural qualities of various dairy products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus mali Rod No 1 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1618 JQAR00000000.1 Bac0000764 Weissella minor "Weissella minor is a rod-shaped, anaerobic bacterium characterized by its unique arrangement in chains and pairs. This microbe thrives optimally at a temperature of 30.0°C and is notably found in specific habitats, including the dry naturally fermented Greek sausage and the sludge of milking machines. Its presence in these environments suggests a role in fermentation processes, contributing to the flavor and preservation of traditional food products. ↵↵The ability of Weissella minor to form chains and pairs may enhance its survival under anaerobic conditions, allowing it to efficiently compete for nutrients in a variety of substrates. The habitats in which it is commonly found indicate that Weissella minor may play a significant role in the microbiota associated with food fermentation and dairy processing. Understanding the specific contributions of Weissella minor to these ecosystems could provide insights into its potential applications in food science and biotechnology, particularly in the development of fermented products and improvement of dairy processing techniques." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella minor Rod anaerobic 30 dry naturally fermented Greek sausage; sludge of milking machines "Chains; Chains, Pairs; Pairs" 1620 JQCD00000000.1 Bac0000765 Ligilactobacillus ruminis str. DPC 6830 "Ligilactobacillus ruminis str. DPC 6830 is a Gram-positive, rod-shaped bacterium that resides in the human gut and exhibits facultative anaerobic metabolism. As a member of the genus Ligilactobacillus, this strain is adapted to thrive in the complex environment of the gastrointestinal tract, where it may contribute to maintaining gut health. Its ability to grow in both the presence and absence of oxygen suggests a versatile metabolic capacity that allows it to utilize available nutrients efficiently, regardless of the local oxygen conditions.↵↵The presence of Ligilactobacillus ruminis str. DPC 6830 in the gut microbiota may play a role in digestive processes, potentially influencing fermentation pathways and the production of metabolites beneficial for host health. This strain's adaptability to varying oxygen levels may also suggest a significant role in maintaining microbial balance within the gut ecosystem, particularly during shifts in dietary intake or in response to fluctuations in microbial community composition.↵↵Understanding the specific functions and interactions of Ligilactobacillus ruminis str. DPC 6830 within the human gut could provide insights into its contributions to gut homeostasis and its potential applications in probiotic development. Further research could elucidate its metabolic pathways and interactions with other gut microorganisms, enhancing our knowledge of microbial dynamics in health and disease." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ruminis Positive Rod Facultative anaerobe human gut 1623 JHAB00000000.1 Bac0000766 Ligilactobacillus sp. WC1T17 "Ligilactobacillus sp. WC1T17 is a Gram-positive, rod-shaped bacterium that predominantly inhabits the human gut and exhibits facultative anaerobic metabolic characteristics. This organism is part of a diverse microbial community within the gastrointestinal tract, where it likely plays a role in digestion and the maintenance of gut health. The facultative anaerobic nature of Ligilactobacillus sp. WC1T17 suggests that it can adapt to varying oxygen levels, thriving both in oxygen-rich environments and in conditions where oxygen is limited. ↵↵The presence of Ligilactobacillus sp. WC1T17 in the human gut may contribute to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for colonic health and have systemic effects on metabolism and inflammation. Understanding the specific functions and interactions of this strain within the gut microbiome could provide insights into its potential role in human health, specifically regarding gut homeostasis and the prevention of dysbiosis. This highlights the importance of further research into the functional capabilities of Ligilactobacillus sp. WC1T17 and its interactions with other gut microorganisms, which may be critical for developing probiotic applications and enhancing gut health strategies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus sp. WC1T17 Positive Rod Facultative anaerobe human gut 1623 FOCC00000000.1 Bac0000767 Ligilactobacillus salivarius str. L28 "Ligilactobacillus salivarius strain L28 is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits facultative anaerobic respiration. This microbe is typically associated with host environments, suggesting a potential symbiotic relationship with its host organisms. The facultative anaerobic nature of L. salivarius L28 indicates that it can adapt to varying oxygen levels, allowing it to thrive in diverse biological contexts, including the gastrointestinal tract where it is commonly found.↵↵Ligilactobacillus salivarius species, including strain L28, are known for their contributions to the gut microbiota, where they may play a role in maintaining intestinal health and modulating immune responses. The ability of L. salivarius L28 to exist in both aerobic and anaerobic conditions may enhance its survival and functional capacity in the dynamic environments of host-associated niches. This adaptability could facilitate the strain's involvement in various metabolic processes, potentially influencing nutrient absorption and gut homeostasis.↵↵Further exploration of Ligilactobacillus salivarius strain L28 could reveal insights into its specific interactions with host systems and its potential applications in probiotics and gut health management. Understanding the ecological role of this strain may contribute to broader knowledge regarding the significance of Lactobacillus species in host-associated microbiomes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NDYW00000000.1 Bac0000768 Ligilactobacillus salivarius "Ligilactobacillus salivarius is a Gram-positive, non-sporulating rod-shaped bacterium that is primarily associated with host organisms, exhibiting facultative anaerobic metabolism. This microbe is part of the lactic acid bacteria group and is notable for its ability to thrive in environments rich in carbohydrates, where it ferments sugars to produce lactic acid. Given its host-associated habitat, L. salivarius is commonly found in the gastrointestinal tract of various animals, including humans, where it may play a role in maintaining gut health.↵↵The facultative anaerobic nature of L. salivarius allows it to adapt to fluctuating oxygen levels, making it versatile in its ecological niches. This adaptability may facilitate its survival in diverse conditions within the host, where it can contribute to the modulation of the gut microbiome and influence the host's immune response. ↵↵Furthermore, the presence of Ligilactobacillus salivarius in the gastrointestinal microbiota suggests potential benefits, such as aiding in digestion and promoting nutrient absorption, although specific functions and interactions with the host remain subjects of ongoing research. The ecological role of L. salivarius in the gut highlights the intricate relationships between host organisms and their resident microbiota, emphasizing the significance of lactic acid bacteria in maintaining a balanced microbial ecosystem." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NBEF00000000.1 Bac0000769 Ligilactobacillus salivarius str. CICC23174 "Ligilactobacillus salivarius str. CICC23174 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic respiration. This strain is primarily host-associated, indicating its adaptation to living within or on host organisms, which typically include various mammalian species. The facultative anaerobic nature of L. salivarius str. CICC23174 allows it to thrive in both aerobic and anaerobic environments, potentially contributing to its versatility in colonizing diverse niches within the host. ↵↵Ligilactobacillus salivarius is recognized for its role in the gastrointestinal microbiota, where it may contribute to the maintenance of gut health through various metabolic activities. The presence of this strain within the host can be significant for understanding the dynamics of microbial communities and their interactions with host physiology. ↵↵Given that L. salivarius str. CICC23174 is nonsporulating, it relies on other survival mechanisms in fluctuating environmental conditions. This trait, together with its facultative anaerobic capabilities, suggests that the strain may play a role in fermentative processes under low-oxygen conditions, potentially influencing the overall metabolic profile of the gut microbiome. Further exploration of its specific interactions and functions could provide insights into its contributions to host health and the stability of microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NZ_CP017108.1 Bac0000770 Ligilactobacillus salivarius str. JCM1046 "Ligilactobacillus salivarius str. JCM1046 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain belongs to a group of lactic acid bacteria, which are commonly associated with host organisms, suggesting a potential role in symbiotic interactions within its ecological niche. ↵↵L. salivarius is known for its ability to ferment carbohydrates, leading to the production of lactic acid, which can lower the pH in its environment and inhibit the growth of competing microbial species. The facultative anaerobic nature of this strain allows it to thrive in varying oxygen conditions, making it versatile in its habitat, which is likely to include various mucosal surfaces within host organisms.↵↵The ecological significance of Ligilactobacillus salivarius str. JCM1046 may be tied to its potential role in maintaining microbial balance and contributing to gut health in host species. Its presence in host-associated environments underscores the importance of such microorganisms in influencing host metabolism and immune function. Further research could elucidate the specific interactions and benefits this strain provides to its host, enhancing our understanding of its biological and ecological roles." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NZ_CP007648.1 Bac0000771 Fructilactobacillus sanfranciscensis "Fructilactobacillus sanfranciscensis is a Gram-positive, nonsporulating rod-shaped bacterium that serves as a chemoheterotroph, primarily deriving its energy from organic compounds. This microbe exhibits a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-depleted environments. It has been isolated from dairy products, indicating its adaptation to a habitat rich in lactose and other fermentable carbohydrates. ↵↵Optimal growth occurs at a temperature of approximately 30.0 °C, which aligns with conditions commonly found in various dairy fermentation processes. As a member of the lactic acid bacteria, F. sanfranciscensis plays a critical role in the fermentation of dairy, contributing to the flavor and texture of fermented products. Its metabolic activities are essential in the production of lactic acid, which not only acts as a preservative but also influences the organoleptic properties of dairy foods.↵↵The successful adaptation of F. sanfranciscensis to dairy environments highlights its potential utility in the dairy industry, particularly in the formulation of probiotic products and in the development of specific cheese varieties. Furthermore, understanding the growth conditions and metabolic capabilities of F. sanfranciscensis may provide insights into optimizing fermentation processes, potentially enhancing the quality and safety of dairy products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus sanfranciscensis Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1625 QFCR00000000.1 Bac0000772 Weissella viridescens "Weissella viridescens is a rod-shaped bacterium commonly found in pairs or as single cells, primarily inhabiting environments associated with fermented pickles. This microbe is part of the diverse community of lactic acid bacteria, which play significant roles in food fermentation processes. The presence of Weissella viridescens in fermented pickles suggests its involvement in the complex biochemical interactions that contribute to the flavor, texture, and preservation of these products.↵↵The fermentation process in pickles typically involves various microorganisms, and Weissella viridescens may contribute to the production of lactic acid, which serves to lower the pH and inhibit spoilage organisms. The ability of this bacterium to thrive in a high-salinity environment, characteristic of pickle brines, indicates its potential for adaptation to extreme conditions, a trait that enhances its survival and proliferation during the fermentation process.↵↵Understanding the specific contributions of Weissella viridescens to the fermentation dynamics of pickles could provide valuable insights into optimizing fermentation conditions for improved flavor and shelf-life of fermented products. This highlights the importance of this microbe not only in food preservation but also in contributing to the unique sensory qualities of fermented pickles, making it a subject of interest in food microbiology and fermentation science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella viridescens Rod fermented pickles Pairs; Singles 1629 UHIV00000000.1 Bac0000773 Weissella viridescens str. UCO-SMC3 "Weissella viridescens strain UCO-SMC3 is a rod-shaped bacterium characterized by its occurrence in pairs or as single cells. This strain is notably associated with the habitat of fermented pickles, indicating its potential role in the fermentation processes utilized in food production. The morphology of Weissella viridescens str. UCO-SMC3, comprising rod-shaped cells, supports its classification within the Weissella genus, which is often linked to lactic acid fermentation.↵↵The presence of this strain in fermented pickles suggests that it may contribute to the development of specific flavor profiles and preservation properties in these foods. The fermentation environment provides a niche where Weissella viridescens may thrive, likely engaging in metabolic activities that influence the overall microbial community dynamics in the fermenting substrate.↵↵Understanding the role of Weissella viridescens str. UCO-SMC3 in the fermentation of pickles may provide insights into its potential applications in enhancing food safety and quality in the production of fermented products. Given the strain's association with traditional food preservation methods, further investigation could reveal its contributions to the sensory attributes and health benefits of fermented pickles, highlighting the importance of microbial diversity in food ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella viridescens Rod fermented pickles Pairs; Singles 1629 RHGY00000000.1 Bac0000774 Kandleria vitulina "Kandleria vitulina is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites including the oral cavity, gut, and skin of numerous species. As a chemoheterotroph, Kandleria vitulina relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. This microbe is a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments, although it prefers the presence of oxygen for optimal growth. Its rod-shaped morphology allows it to navigate through tight spaces and adhere to surfaces, facilitating its colonization of diverse body sites. The mesophilic temperature preference of Kandleria vitulina enables it to thrive in environments with moderate temperatures, ranging from 20°C to 45°C. Its ability to inhabit various body sites, including those of humans and animals, highlights its adaptability and versatility. Kandleria vitulina has been isolated from the oral cavity of cattle, where it plays a role in the breakdown of complex carbohydrates, and its presence has also been detected in the gut microbiome of humans, contributing to the fermentation of dietary fibers. The unique characteristics of Kandleria vitulina make it a valuable subject for further research, particularly in the context of its potential applications in biotechnology and medicine, such as the development of novel enzymes and probiotics." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Kandleria Kandleria vitulina Positive Coccus Anaerobe rumen 1630 FNNF00000000.1 Bac0000775 Listeria monocytogenes "Listeria monocytogenes is a type of bacterium that thrives in a variety of environments, exhibiting several distinct characteristics that set it apart from other microbes. It falls into the category of psychrotrophic bacteria, with a temperature preference for temperatures ranging from 3°C to 37°C. This means that it can grow in a range of environments, from refrigerated food to warmer settings. As a heterotroph, L. monocytogenes derives its energy by breaking down organic compounds, such as carbohydrates, proteins, and fats. In terms of its metabolism, L. monocytogenes is an aerobic bacterium, meaning it requires oxygen to produce energy. It uses aerobic respiration to generate energy, which involves the breakdown of glucose and other organic compounds to produce ATP. The bacterium's shape is typically rod-shaped, with a Gram-positive staining reaction. This means that its cell wall is thick and contains a high amount of peptidoglycan, which is a characteristic of Gram-positive bacteria. Listeria monocytogenes can be found in a wide range of body sites, including the gastrointestinal tract, respiratory tract, and genitourinary tract of humans and animals. It is commonly found in soil, water, and decaying organic matter, and can also contaminate food products, particularly dairy and meat products. As an obligate aerobe, L. monocytogenes requires oxygen to grow and thrive. This means that it is unable to grow in anaerobic environments, such as deep-sea sediments or the gut of anaerobic animals. Listeria monocytogenes is also capable of growing in microaerophilic environments, where oxygen levels are low but not absent. In addition to its unique characteristics, L. monocytogenes has been linked to several diseases in humans and animals, including listeriosis, a severe and potentially life-threatening infection that can affect the brain, spinal cord, and other organs. It is a significant foodborne pathogen, and its ability to grow in a wide range of environments makes it a widespread and persistent threat to human health." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles Nonsporulating Human 1639 NZ_CP029175.1 Bac0000776 Listeria grayi "Listeria grayi is a Gram-positive, rod-shaped bacterium that falls under the category of psychrotolerant organisms, thriving best in cooler temperatures while also capable of growth at higher temperatures. As a heterotroph, it derives its energy from organic compounds, which it metabolizes in various environments, making it adaptable to diverse growth conditions. This organism is typically found in various body sites across different species, including soil, water, and decaying organic matter, as well as in some animal intestines. The Gram-positive characteristic of Listeria grayi indicates a thick peptidoglycan layer in its cell wall, which can confer resistance to certain environmental stresses as well as antibiotics. Its rod-like shape not only aids in motility but also allows for efficient nutrient uptake and reproduction. Psychrotolerant bacteria like Listeria grayi can flourish at low temperatures, an adaptation that enables them to survive in cold environments, making them a concern in food safety, especially in refrigerated foods. As a heterotroph, Listeria grayi relies on the organic matter from its surroundings for growth, thriving on a variety of organic nutrients available in its environment. It is classified as a facultative anaerobe, which means it can grow in both the presence and absence of oxygen. This flexibility allows it to colonize various ecological niches and enhances its potential for survival in fluctuating conditions. Listeria grayi is often associated with foodborne illness, particularly in relation to contaminated dairy products and vegetables. Its ability to survive and even proliferate at refrigeration temperatures has made it a significant pathogen in food safety discussions, prompting researchers to study its mechanisms of resistance and pathogenicity closely. This bacterium plays an essential role in understanding microbial ecology and the implications of bacterial contamination in food systems." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria grayi Positive Yes Facultative anaerobe Human; Non-pathogenic 1641 UGPG00000000.1 Bac0000777 Kurthia zopfii "Kurthia zopfii is a Gram-positive bacterium characterized by its aerobic metabolism and diverse habitat preferences. This microbe has been isolated from various environments, including air, fecal material, intestinal contents, meat products, and milk. Additionally, it has been detected in wastewater, indicating its resilience and adaptability to different ecological niches.↵↵The ability of K. zopfii to thrive in both terrestrial environments and within the gastrointestinal tracts of animals suggests a potential role in the degradation of organic materials, although specific metabolic pathways have not been conclusively identified. Its presence in food products, such as meats and milk, raises questions about its implications for food safety and quality. While no specific pathogenicity has been documented, its isolation from fecal matter and wastewater might indicate a role in the microbial community dynamics within these environments.↵↵The diverse habitat of K. zopfii underscores its ecological versatility, potentially allowing it to participate in nutrient cycling processes. Understanding the ecological role of K. zopfii in both natural and anthropogenic environments may provide insights into its contributions to microbial diversity and function, particularly in relation to its interactions with other microorganisms in complex communities." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Kurthia Kurthia zopfii positive Yes aerobic air; fecal material; intestinal contents; meat products; meats; milk; wastewater 1650 NZ_LR134474.1 Bac0000778 Actinobaculum suis Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum suis anaerobic 1657 FNAU00000000.1 Bac0000779 Actinomyces bovis Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces bovis anaerobic 1658 UAPQ00000000.1 Bac0000780 Schaalia odontolytica "Schaalia odontolytica is a microorganism classified within the phylum Bacteroidetes, characterized by its unique set of properties and preferences. It thrives in a mesophilic environment, preferring temperatures between 20-40°C, and is categorized as a chemoheterotroph, utilizing organic compounds as its energy source. This microbe produces energy through the process of fermentation, a characteristic shared by many heterotrophic microorganisms. Schaalia odontolytica exhibits gram-negative staining, indicating the presence of an outer membrane in its cell wall. Its shape is typically curved or bent, with a characteristic comma-like arrangement. This unique morphology allows it to inhabit a wide range of body sites, including the mouth, skin, and gastrointestinal tract, in various species. As an obligate anaerobe, Schaalia odontolytica is sensitive to oxygen and requires a low-oxygen or anaerobic environment to survive and multiply. In the presence of oxygen, it would experience significant growth inhibition and even death. Schaalia odontolytica is often found in close association with dental plaque, where it plays a crucial role in the degradation of dental biofilm. Its ability to exploit the complex nutrients present in biofilm allows it to thrive in this environment, contributing to the development of dental caries and periodontal disease. Despite its pathogenic potential, Schaalia odontolytica has also been implicated in the decomposition of organic matter, particularly in aquatic environments. Its ability to break down complex organic compounds makes it a valuable player in the ecosystem, recycling essential nutrients and maintaining ecological balance. Notably, Schaalia odontolytica has been found to produce a range of extracellular enzymes, including proteins and lipases, which aid in its degradative processes. These enzymes can also influence the surrounding environment, modifying the structure and composition of biofilms and potentially impacting the development of oral diseases." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia odontolytica Positive Filamentous No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 1660 PKKM00000000.1 Bac0000781 Trueperella pyogenes "Trueperella pyogenes is a Gram-positive, rod-shaped bacterium that thrives in mesophilic environments, making it a facultative anaerobe and a chemoheterotroph. This versatile microbe is primarily found in the bodies of various animals, particularly in ruminants such as cattle and sheep, but can also be isolated from the skin and mucous membranes of healthy individuals, as well as abscesses and infected tissues associated with various infections. As a Gram-positive bacterium, T. pyogenes has a thick peptidoglycan layer in its cell wall, which contributes to its ability to withstand certain environmental stresses. Its rod shape allows for efficient movement and colonization within host tissues. The mesophilic nature of T. pyogenes indicates that it thrives at moderate temperatures, typically between 25°C and 40°C, making it well-suited to the warm environments found in the body of its animal hosts. As a facultative anaerobe, T. pyogenes can survive in both aerobic and anaerobic conditions, allowing it to occupy a variety of niches within the host. Its classification as a chemoheterotroph means that it relies on organic compounds for energy and carbon, primarily utilizing the breakdown of host tissue and cellular debris. This microbe has clinical significance as it is often associated with a range of purulent infections, including mastitis in dairy cows and foot rot in sheep. The pathogenic potential of T. pyogenes is linked to its ability to produce various virulence factors, including toxins and enzymes, which facilitate tissue invasion and damage. Its adaptability and resilience make it a significant concern in veterinary medicine, as it poses challenges to both animal health and agricultural productivity." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Trueperella Trueperella pyogenes Positive sphere non-motile Facultative anaerobe mucous membranes non-spore-forming 1661 NZ_CP033905.1 Bac0000782 Arthrobacter sp. "Arthrobacter sp. is a Gram-positive bacterium predominantly found in the extreme environments of hot springs, including their sediments and surrounding waters. This genus is characterized by its aerobic metabolism, necessitating the presence of oxygen for its growth and physiological activities. ↵↵The ability of Arthrobacter sp. to thrive in high-temperature environments suggests adaptations that enable it to maintain cellular function and integrity under thermal stress. These adaptations may include specialized proteins and membrane compositions that stabilize cellular processes at elevated temperatures. ↵↵Additionally, the presence of Arthrobacter sp. in hot spring habitats indicates a potential role in biogeochemical cycling, particularly in nutrient turnover and organic matter degradation within these unique ecosystems. The interactions of Arthrobacter sp. with other microbial communities in such environments may contribute to the overall microbial diversity and functionality, offering insights into microbial adaptation and survival strategies in extreme conditions." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. positive aerobic hot spring; hot springs; sediment of hot springs; water 1667 DOZW00000000.1 Bac0000783 Bifidobacterium longum subsp. longum "Bifidobacterium longum subsp. longum is a type of gram-positive, rod-shaped bacteria that thrives in a variety of environments. It is classified as a thermophilic microbe, preferring temperatures between 32°C and 40°C, making it well-suited to inhabit the human gut. In terms of metabolism, B. longum is a heterotroph, relying on the consumption of organic compounds for energy production. Specifically, it uses fermentation to break down complex carbohydrates, producing lactic acid and acetic acid as byproducts. As a gram-positive bacterium, B. longum has a thick peptidoglycan layer in its cell wall, which provides structural support and helps to maintain the cell's shape. The rod-shaped morphology of this microbe allows it to efficiently colonize and inhabit the crevices of the human gut. B. longum is found in all body sites, with a particular predilection for the gastrointestinal tract, where it plays a crucial role in the degradation of complex carbohydrates and the production of short-chain fatty acids. In terms of its oxygen tolerance, B. longum is an obligate anaerobe, meaning it cannot survive in the presence of oxygen. This is not surprising, given its ability to thrive in the low-oxygen environment of the gut. Despite this, B. longum is capable of fermenting complex carbohydrates in the presence of low levels of oxygen, allowing it to thrive in a variety of ecological niches. B. longum has been used as a probiotic in the treatment of various gastrointestinal disorders, including irritable bowel syndrome (IBS), inflammatory bowel disease (IBD), and antibiotic-associated diarrhea. Its ability to produce short-chain fatty acids and its stimulation of mucin production in the gut have been implicated in its therapeutic benefits. Additionally, B. longum has been shown to modulate the host immune response, reducing inflammation and improving the overall health of the gut microbiome. Its unique combination of characteristics make B. longum a valuable component of the human microbial ecosystem." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHTC00000000.1 Bac0000784 Bifidobacterium longum subsp. longum str. AH1206 "Bifidobacterium longum subsp. longum str. AH1206 is a Gram-positive, anaerobic bacterium characterized by its rod shape and distinctive cell arrangement, which can be observed in clusters, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions commonly found within its host-associated habitat. ↵↵As a member of the Bifidobacterium genus, B. longum subsp. longum str. AH1206 is typically found in the gastrointestinal tract of mammals, where it plays a vital role in the maintenance of gut health and the modulation of the host immune system. Its anaerobic nature suggests that it contributes to the fermentation processes within the gut, potentially aiding in the breakdown of dietary fibers and the production of short-chain fatty acids, which are crucial for colonic health.↵↵These traits highlight the adaptability of B. longum subsp. longum str. AH1206 to the anaerobic conditions of the gut environment, where it likely engages in symbiotic relationships with the host and other microbial inhabitants. This strain exemplifies the intricate interactions within the gut microbiome, emphasizing the importance of anaerobic bacteria in maintaining a balanced intestinal ecosystem." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 NZ_CP016019.1 Bac0000785 Bifidobacterium longum subsp. longum str. VMKB44 "Bifidobacterium longum subsp. longum str. VMKB44 is a Gram-positive, anaerobic bacterium characterized by its rod shape and tendency to form clusters, pairs, and singles. This strain optimally thrives at a temperature of 37.0°C, which aligns with the physiological temperature of its primary habitat, the human gut, where it resides as a host-associated microbe.↵↵As a member of the Bifidobacterium genus, B. longum subsp. longum str. VMKB44 is significant for its potential roles in gut health, including the fermentation of dietary fibers and production of short-chain fatty acids, which are beneficial for maintaining intestinal homeostasis. The strain's anaerobic nature suggests that it plays a critical role in maintaining the anaerobic environment typical of the gut microbiome, which is essential for the survival of various gut microorganisms and the overall health of the host.↵↵The ability of B. longum subsp. longum str. VMKB44 to form various cell arrangements may enhance its adaptability to different microenvironments within the gut, contributing to its ecological versatility. This adaptability could be vital not only for its survival but also for the modulation of the gut microbiota composition, thereby influencing host metabolic processes and immune responses. Understanding the specific functions and interactions of this strain within the gut ecosystem could provide insights into its role in promoting gut health and preventing dysbiosis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 JRWN00000000.1 Bac0000786 Bifidobacterium adolescentis "The microbe Bifidobacterium adolescentis exhibits the following characteristics: mesophile, chemoheterotroph, anaerobic energy production, Gram-positive, rod-shaped, and is found in the gastrointestinal tract.As a mesophile, Bifidobacterium adolescentis thrives in temperatures ranging from 25 to 40 degrees Celsius, making it relatively adaptable to various environments. Its energy source is nutritional, obtained through the breakdown of complex organic compounds, a characteristic unique to chemoheterotrophs. Anaerobic energy production allows the microbe to survive in environments with limited oxygen availability, common in the human gut. Bifidobacterium adolescentis is Gram-positive, meaning it does not contain a thick peptidoglycan layer, and its rod-shaped morphology allows it to inhabit the gastrointestinal tract. The microbe is ubiquitous in the gut, found in the mucosa-associated microbiota and the gut lumen, playing a vital role in the breakdown and absorption of nutrients. As an obligate anaerobe, Bifidobacterium adolescentis requires a completely oxygen-free environment to survive and thrive. This adaptation allows it to colonize regions of the gut that are difficult for other microorganisms to inhabit. Additionally, its ability to survive in environments with limited oxygen availability makes it a resilient inhabitant of the gut. Bifidobacterium adolescentis has been shown to be beneficial for human health, particularly in relation to gut function and immune system development. Research has demonstrated that it plays a role in the maturation of the human gut microbiota, aiding in the digestion and absorption of nutrients. This microbe has also been linked to the production of anti-inflammatory compounds, which may contribute to its potential therapeutic applications in treating various disorders." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 LNKB00000000.1 Bac0000787 Bifidobacterium adolescentis str. BBMN23 "Bifidobacterium adolescentis strain BBMN23 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement and is classified as a nonsporulating anaerobe. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat. ↵↵As a member of the Bifidobacterium genus, this strain is part of the normal microbiota found in the gastrointestinal tract of humans and other mammals, playing a significant role in maintaining gut health and contributing to the overall balance of the microbiome. Its anaerobic nature indicates that it flourishes in environments devoid of oxygen, an essential characteristic that enables it to survive and perform metabolic functions in the densely populated and low-oxygen conditions of the intestines.↵↵The unique physiological traits of Bifidobacterium adolescentis str. BBMN23, particularly its ability to thrive in anaerobic conditions and its association with the host, suggest that it may be involved in various beneficial interactions with the host's immune system and metabolic processes. Further exploration of this strain could provide insights into its potential roles in health maintenance and disease prevention, highlighting the importance of gut-associated microorganisms in human health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 NZ_CP010437.1 Bac0000788 Bifidobacterium bifidum "Bifidobacterium bifidum is a mesophilic, chemoheterotrophic, Gram-positive bacterium that exhibits a rod-shaped morphology and is primarily found in the human gastrointestinal tract, particularly in feces, as well as in the oral cavity and vagina. This microbe thrives in anaerobic environments, making it an obligate anaerobe, which means it cannot survive in the presence of oxygen. Its metabolism is reliant on fermentative processes, allowing it to extract energy from a variety of carbohydrates, particularly dietary fibers and oligosaccharides, which it ferments to produce organic acids, primarily lactic acid and acetic acid. These fermentation products contribute to the acidic environment of the gut, inhibiting the growth of harmful pathogens. Bifidobacterium bifidum plays a critical role in maintaining gut health and promoting a balanced microbiome. It is often considered a probiotic due to its beneficial effects on digestion and overall health. This bacterium helps in the breakdown of complex carbohydrates, facilitates nutrient absorption, and enhances immune function by stimulating the production of antibodies and modulating inflammatory responses.In addition to its role in gut health, Bifidobacterium bifidum is also recognized for its potential therapeutic applications. It has been studied for its effects on alleviating symptoms of irritable bowel syndrome (IBS), diarrhea, and constipation. Furthermore, its presence in yogurt and other fermented foods highlights its importance in the food industry, as it contributes to the probiotic content of these products, promoting gut health in consumers. The unique ability of Bifidobacterium bifidum to survive in the human gut and exert beneficial effects makes it a focal point of research in microbiome studies and probiotic formulation." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 UAQH00000000.1 Bac0000789 Bifidobacterium bifidum str. BF3 "Bifidobacterium bifidum strain BF3 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, primarily associated with host organisms. This strain, like other members of the Bifidobacterium genus, is typically found in the gastrointestinal tracts of mammals, where it plays a vital role in gut health and microbial balance. ↵↵Bifidobacterium bifidum is known for its ability to ferment a variety of carbohydrates, contributing to the production of short-chain fatty acids, which are crucial for maintaining intestinal health and may exert beneficial effects on the host's immune system. The anaerobic nature of this bacterium highlights its adaptation to the microaerophilic conditions prevalent in the intestines, where it competes with other microbial species for nutrients and colonization sites.↵↵Given its habitat and physiological traits, Bifidobacterium bifidum strain BF3 may play an integral role in the modulation of gut microbiota composition and function. This could have implications for overall host health, particularly in the context of gut dysbiosis or during the administration of antibiotics, suggesting that maintaining or restoring populations of this strain may be beneficial in therapeutic applications aimed at enhancing gut microbiome resilience and functionality." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 NZ_CP010412.1 Bac0000790 Bifidobacterium bifidum str. MJR8628B "Bifidobacterium bifidum strain MJR8628B is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic environments, making it well-suited for a host-associated habitat. This strain is part of a genus known for its beneficial roles in the gastrointestinal tract of mammals, particularly in humans and other warm-blooded animals. ↵↵As an anaerobe, B. bifidum str. MJR8628B relies on fermentation for energy production, utilizing various carbohydrates available in the host's gut. This metabolic strategy contributes to the maintenance of a balanced microbiome, which is essential for optimal digestive health and immune function. The presence of B. bifidum in the gut is often associated with positive outcomes, including the modulation of gut microbiota composition and the enhancement of gut barrier function.↵↵Research into Bifidobacterium species, including strain MJR8628B, suggests they may play a role in the production of short-chain fatty acids (SCFAs), which are crucial for colonic health and have anti-inflammatory properties. Additionally, the ability of this strain to adapt to the anaerobic conditions of the host gut underlines its potential significance in gut ecology. Understanding the specific interactions of B. bifidum str. MJR8628B within the complex microbial community of the host could provide insights into its contributions to health and disease prevention." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 LRPO00000000.1 Bac0000791 Bifidobacterium bifidum str. TMC 3115 "Bifidobacterium bifidum strain TMC 3115 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, typically associated with the gastrointestinal tracts of various hosts. This species is part of the Bifidobacteriaceae family and is known for its role as a beneficial microbe within the gut microbiome, contributing to the maintenance of gut health and the modulation of the immune system.↵↵B. bifidum str. TMC 3115 is adapted to its host-associated habitat, where it engages in fermentative metabolism, utilizing carbohydrates to produce short-chain fatty acids that are pivotal for colonic health. Its anaerobic requirement indicates a preference for environments devoid of oxygen, which aligns with the conditions found in the intestines of mammals. ↵↵The presence of B. bifidum in the gut microbiota is associated with various beneficial effects, including the enhancement of nutrient absorption and the inhibition of pathogenic microbes, although the precise mechanisms of action and the full spectrum of its interactions within the microbiome remain areas of ongoing research. Understanding the specialized adaptations of B. bifidum str. TMC 3115 enhances our knowledge of gut microbiota composition and its implications for host health, particularly in the context of probiotic applications and gut microbiome modulation." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 NZ_AP018132.1 Bac0000792 Bifidobacterium longum subsp. infantis str. BT1 "Bifidobacterium longum subsp. infantis str. BT1 is a Gram-positive, rod-shaped bacterium that typically exists in clusters, pairs, or as single cells. This strain is classified as an anaerobe, thriving in environments devoid of oxygen, which aligns with its natural habitat associated with hosts, such as the gastrointestinal tract of infants. The optimal growth temperature for B. longum subsp. infantis str. BT1 is approximately 37.0°C, reflecting its adaptation to the warm environment of the human body.↵↵Bifidobacterium longum subsp. infantis plays a significant role in the gut microbiota, particularly during early life, where it contributes to the development of the immune system and digestion of human milk oligosaccharides. Its presence is crucial for maintaining gut health and homeostasis in infants. Notably, the ability of this strain to form various cell arrangements may enhance its adaptability and functionality within the complex microbial communities of the host's gut.↵↵In conclusion, Bifidobacterium longum subsp. infantis str. BT1 exemplifies a specialized adaptation to the host-associated environment, where its anaerobic nature and optimal growth temperature foster a symbiotic relationship, ultimately supporting the health and development of its human host." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Non-pathogenic 1682 NZ_CP010411.1 Bac0000793 Bifidobacterium longum subsp. infantis "Bifidobacterium longum subsp. infantis is a microorganism that exhibits a unique combination of characteristics. It is a thermophilic microbe, thriving in environments with temperatures ranging from 37°C to 45°C. Its metabolism is characterized as heterotrophic, meaning it requires external sources of energy, such as carbohydrates, proteins, and fats. Specifically, B. longum subsp. infantis produces energy through fermentation, utilizing its complex enzyme machinery to break down and convert these nutrients into energy. Microscopically, B. longum subsp. infantis appears as a Gram-positive, rod-shaped bacterium, often branching or forming a tree-like structure. This shape allows it to effectively interact with its surroundings, facilitating the uptake of nutrients and the release of fermentation products. As a commensal microbe, B. longum subsp. infantis can be found inhabiting various body sites, including the gastrointestinal tract, oral cavity, and respiratory tract. Its ability to colonize these diverse environments is likely due to its flexibility in terms of oxygen preference, being a facultative anaerobe that can survive in both aerobic and anaerobic conditions. In terms of its Gram stain, B. longum subsp. infantis exhibits a characteristic purple color, indicating the presence of peptidoglycan in its cell wall. This unique characteristic is a defining feature of Gram-positive bacteria. Perhaps most importantly, B. longum subsp. infantis plays a crucial role in maintaining the balance of the human microbiome. Its fermentation products, such as short-chain fatty acids, have been implicated in the regulation of gut motility, inflammation, and immune function. Further research has also implicated B. longum subsp. infantis in the development and maintenance of the gut-associated lymphoid tissue (GALT), a critical component of the immune system." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Non-pathogenic 1682 SSWL00000000.1 Bac0000794 Bifidobacterium asteroides Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium asteroides bee bread; bee pollen; brood; brood comb; digestive tract; fresh honey; hindgut; honey; honey crop 1684 QGLK00000000.1 Bac0000795 Bifidobacterium kimbladii Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium kimbladii bee bread; bee pollen; brood; brood comb; digestive tract; fresh honey; hindgut; honey; honey crop 1684 JWME00000000.1 Bac0000796 Bifidobacterium breve str. 139W423 "Bifidobacterium breve str. 139W423 is a Gram-positive, anaerobic bacterium predominantly found in the gastrointestinal tracts of healthy infants, particularly within the infant gut microbiota derived from human breast milk. This species plays a pivotal role in the establishment and maintenance of a healthy gut microbiome during early development.↵↵Bifidobacterium breve str. 139W423 thrives in anaerobic environments, such as those found in the intestines, where it contributes to the fermentation of dietary fibers and the production of beneficial short-chain fatty acids. Its presence in breast milk underscores its importance in maternal-infant health, as it is one of the primary microorganisms that colonize the infant gut, supporting immune development and potentially influencing metabolic processes.↵↵The ecological significance of Bifidobacterium breve str. 139W423 lies in its ability to adapt to the unique conditions of the human gut, particularly in infants, where it contributes to the establishment of a balanced microbiota that is essential for digestion and overall health. Through its interactions with other microbial species and its metabolic activities, Bifidobacterium breve str. 139W423 plays a crucial role in shaping the gut environment, underscoring the importance of early microbial colonization in the development of a resilient intestinal microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 NZ_CP021556.1 Bac0000797 Bifidobacterium breve "Bifidobacterium breve is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites across all species, including the gut, respiratory, and urinary tracts, and is an Obligate Anaerobe. As a Gram-positive microbe, Bifidobacterium breve has a thick peptidoglycan layer in its cell wall, providing it with a strong defense against environmental stresses. Its rod-shaped morphology allows it to adapt to different environments and interact with various surfaces. The mesophilic temperature preference of Bifidobacterium breve enables it to grow and multiply in temperatures ranging from 20-45°C, making it suitable for human and animal hosts. As a Chemoheterotroph, Bifidobacterium breve relies on organic compounds for energy and carbon sources, breaking down complex molecules into simpler ones to sustain its growth. Its presence in various body sites suggests its ability to colonize and thrive in diverse environments. The Obligate Anaerobe nature of Bifidobacterium breve means it requires the absence of oxygen to survive, which is why it is typically found in areas with low oxygen levels, such as the gut. Bifidobacterium breve plays a crucial role in maintaining the balance of the microbiome and has been shown to have probiotic properties, aiding in digestion and immune system function. It has also been found to produce antimicrobial compounds that inhibit the growth of pathogenic bacteria, making it a valuable microbe in the prevention and treatment of various diseases." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 PNHM00000000.1 Bac0000798 Bifidobacterium breve str. BBRI4 "Bifidobacterium breve str. BBRI4 is a Gram-positive anaerobic bacterium predominantly found in the gastrointestinal tracts of humans, particularly in the intestines of healthy newborns and infants. This strain is commonly associated with human breast milk and contributes significantly to the gut microbiota of infants, playing a vital role in the early stages of microbial colonization and gut development. ↵↵As a member of the Bifidobacterium genus, B. breve str. BBRI4 is known for its ability to ferment carbohydrates, producing beneficial short-chain fatty acids that are essential for gut health. The presence of this strain in breast milk suggests a symbiotic relationship, where maternal milk supports the establishment of a healthy gut microbiota in infants, potentially influencing their immune system and metabolic processes. ↵↵Further research into Bifidobacterium breve str. BBRI4 may reveal additional insights into its specific functional contributions to the infant gut microbiome and its potential protective effects against gastrointestinal disorders. Understanding the dynamics of this strain within the infant gut ecosystem could enhance our knowledge of early microbial health and inform strategies for improving infant nutrition and well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 LFII00000000.1 Bac0000799 Bifidobacterium breve str. CNCM I-4321 "Bifidobacterium breve str. CNCM I-4321 is a Gram-positive, anaerobic bacterium predominantly found in the gastrointestinal tract, particularly within the gut microbiota of healthy newborns and infants, as well as in human breast milk. This strain is part of a diverse community of beneficial microbes that inhabit the intestines, playing a crucial role in gut health and development during early life.↵↵This species thrives in anaerobic conditions, which are characteristic of the gut environment, facilitating its growth and activity in the absence of oxygen. Its presence in human breast milk underscores its importance in shaping the infant gut microbiome, as it may contribute to the establishment of a healthy microbial community essential for proper digestion and immune system development.↵↵Bifidobacterium breve str. CNCM I-4321's adaptation to the infant intestine suggests a specialized role in metabolizing human milk oligosaccharides, which are abundant in breast milk. This unique ability not only aids in the digestion of these complex carbohydrates but may also enhance the overall health of the infant by promoting a balanced gut microbiota. Consequently, understanding the functional capabilities of this strain could provide insights into its potential applications in probiotic formulations targeted at improving infant health and development." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 NZ_CP021559.1 Bac0000800 Bifidobacterium breve str. DRBB28 "Bifidobacterium breve str. DRBB28 is a Gram-positive, anaerobic bacterium primarily found in the gastrointestinal tracts of humans, particularly within the microbiota of healthy newborns and infants. This strain is notably present in human breast milk and the infant gut, where it plays a crucial role in the establishment and maintenance of a balanced gut microbiota during early development. ↵↵As an anaerobe, Bifidobacterium breve str. DRBB28 thrives in oxygen-deprived environments, which are characteristic of the intestinal milieu. Its presence in breast milk suggests a potential nutritional and protective benefit, as this bacterium may contribute to the initial colonization of the infant gut, thereby influencing gut health and immune development. ↵↵The unique ecological insight of Bifidobacterium breve str. DRBB28 is its association with the infant gut microbiota, where it may facilitate the digestion of lactose and other carbohydrates, contributing to the overall metabolic functions of the gut. This may also have implications for the prevention of gastrointestinal disorders in early life, highlighting the importance of this microbial species in the context of infant nutrition and health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 NZ_CP021553.1 Bac0000801 Bifidobacterium coryneforme str. LMG 18911 "Bifidobacterium coryneforme str. LMG 18911 is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium. As a member of this genus, it is characterized by its rod-shaped morphology and is known for its role in the gastrointestinal tract of various hosts. The anaerobic nature of Bifidobacterium coryneforme suggests that it thrives in environments devoid of oxygen, which is a typical trait of many bifidobacteria that participate in the fermentation processes within the gut microbiome.↵↵This strain, like other bifidobacteria, is likely involved in the fermentation of dietary fibers, producing beneficial metabolites such as short-chain fatty acids (SCFAs). The production of SCFAs plays a crucial role in maintaining gut health, modulating the immune response, and potentially influencing host metabolism. Bifidobacterium coryneforme str. LMG 18911 may also contribute to the stability and diversity of the gut microbiota, highlighting its possible importance in the context of microbial ecology and host health.↵↵Research into this specific strain could provide insights into its potential functional roles within the microbiome, as well as its interactions with other microbial communities. Understanding these dynamics is essential for elucidating the contributions of Bifidobacterium coryneforme to host health and the overall microbial ecosystem." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium coryneforme Positive Anaerobe 1687 NZ_CP007287.1 Bac0000802 Bifidobacterium cuniculi str. LMG 10738 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium cuniculi anaerobic 1688 JGYV00000000.1 Bac0000803 Bifidobacterium pseudolongum subsp. globosum "Bifidobacterium pseudolongum subsp. globosum is a nonsporulating, anaerobic bacillus commonly found in the gut microbiota of humans and various animals. This subspecies is part of the Bifidobacterium genus, which is renowned for its role in maintaining gut health and influencing the host's immune response. B. pseudolongum subsp. globosum is characterized by its fermentative metabolism, deriving energy as a chemoheterotroph primarily from carbohydrates, particularly those derived from dietary fibers.The organism typically exists in pairs, a trait that distinguishes it from other bacteria and may facilitate its interactions within the complex gut microbiome. This subspecies contributes to the fermentation process in the gut, producing short-chain fatty acids (SCFAs) such as acetate and propionate, which are beneficial for colonic health and may help regulate energy homeostasis. Furthermore, Bifidobacterium pseudolongum subsp. globosum is known to exhibit beneficial effects on the host's immune system. It has been implicated in the modulation of the gut-associated lymphoid tissue (GALT), potentially enhancing the production of mucosal antibodies and fostering a balanced immune response.In the context of ecological interactions, this bacterium plays a crucial role in the gut's microbial ecosystem by supporting the growth of beneficial microbes and inhibiting pathogenic strains, thereby contributing to overall gut health and stability. Its presence is often linked to a well-balanced diet rich in fibers, underscoring the importance of dietary choices in shaping the gut microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 1690 RYUM00000000.1 Bac0000804 Bifidobacterium pseudolongum str. UMB-MBP-01 "Bifidobacterium pseudolongum strain UMB-MBP-01 is a Gram-positive, nonsporulating rod-shaped bacterium that typically arranges itself in pairs. This anaerobic microbe thrives optimally at a temperature of 37.0°C and derives energy as a chemoheterotroph, utilizing organic compounds for growth. ↵↵Bifidobacterium species, including strain UMB-MBP-01, are commonly found in various habitats, including the gastrointestinal tracts of mammals, where they play a crucial role in maintaining gut health. The organism's anaerobic nature suggests it may contribute to the fermentation processes within these habitats, potentially influencing the microbial community structure and metabolic activities.↵↵The ability of Bifidobacterium pseudolongum str. UMB-MBP-01 to occupy diverse environments and its adaptation to anaerobic conditions could hint at its ecological flexibility, which may be significant for its survival and functionality in symbiotic relationships with host organisms. Understanding the specific interactions and contributions of this strain within its habitat may provide insights into its role in gut microbiota dynamics and overall host health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Pairs Nonsporulating 1694 NZ_CP022544.1 Bac0000805 Bifidobacterium pseudolongum "Bifidobacterium pseudolongum is a species of bacteria that thrives in a wide range of environments, exhibiting a temperature preference category of mesophilic, meaning it grows optimally between 20-45°C. As a heterotroph, it obtains its energy by breaking down pre-existing organic matter, rather than producing its own through photosynthesis or chemosynthesis. B. pseudolongum is capable of fermentative metabolism, generating energy from the breakdown of complex carbohydrates. The bacterium is gram-variable, meaning its Gram stain reactions may vary depending on the conditions it is grown in. In terms of shape, B. pseudolongum is typically rod-shaped, with a length of 1-2 μm. It can be found in various body sites, including the gastrointestinal tract, mouth, and vagina of humans and animals, as well as in soil and water environments. B. pseudolongum is an obligate anaerobe, requiring a low oxygen environment to thrive. It is sensitive to oxygen and will not grow in the presence of high levels of dissolved oxygen. However, it can tolerate low levels of oxygen and will survive in microaerophilic conditions. This microbe has been found to produce a variety of bioactive compounds, including short-chain fatty acids and exopolymers, which are thought to play a role in its interactions with the host and its environment. Furthermore, research has shown that B. pseudolongum can modulate the immune system and reduce inflammation, making it a promising candidate for therapeutic applications. Its ability to adhere to epithelial cells and form biofilms also suggests a role in the protection of the host against pathogens." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Pairs Nonsporulating 1694 QRZV00000000.1 Bac0000806 Brevibacterium linens str. ATCC 19391 "Brevibacterium linens strain ATCC 19391 is a Gram-positive, non-sporulating rod-shaped bacterium primarily recognized for its ecological niche in arsenic-contaminated well water, groundwater, and the rind of Danish Danbo cheese. As an aerobe, this microorganism requires oxygen for its metabolic processes, which can influence its distribution and activity in various environments.↵↵The presence of Brevibacterium linens in diverse habitats, including both aquatic systems and food matrices, suggests its adaptability and potential role in biogeochemical cycles, particularly in environments affected by contamination. The association with Danish Danbo cheese indicates its relevance in food microbiology, where it may contribute to flavor development and surface ripening processes.↵↵Notably, the ability of Brevibacterium linens strain ATCC 19391 to thrive in arsenic-laden environments may provide insights into its mechanisms of resistance to heavy metals, further underscoring its ecological significance. This trait positions the bacterium as a potential candidate for studies aimed at bioremediation strategies in arsenic-polluted sites, highlighting its relevance beyond traditional microbiological contexts. Such attributes invite further exploration into its metabolic pathways and interactions within complex microbial communities." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium linens Positive Rod Aerobe arsenic-contaminated well water; groundwater; rind of a Danish Danbo cheese Nonsporulating 1703 NZ_CP026735.1 Bac0000807 Brevibacterium linens "Brevibacterium linens is a gram-positive, rod-shaped bacterium that thrives in mesophilic temperatures, functioning as a heterotroph and an aerotolerant anaerobe. This organism is commonly found on the surfaces of various cheeses, meats, and even human skin, where it plays a crucial role in the production of specific flavors and aromas. As a gram-positive bacterium, Brevibacterium linens possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining process, giving it a distinctive purple appearance under a microscope. The rod shape of this microbe allows it to occupy various ecological niches, where it aids in the breakdown of organic matter. Preferring moderate temperatures between 20°C and 40°C, Brevibacterium linens thrives in environments frequently encountered in the food industry. Its heterotrophic metabolism means it relies on organic compounds for energy and growth, utilizing a variety of substrates found in dairy and protein-rich foods. As an aerotolerant anaerobe, it can survive in both oxygen-rich and oxygen-poor environments, allowing it to flourish on cheese surfaces even in the presence of oxygen, where it contributes to the ripening process. Beyond its role in food production, Brevibacterium linens has garnered interest in biotechnological applications. It is being studied for its potential in bioremediation processes and the production of bioactive compounds. This bacterium is also notable for its association with human skin, where it can contribute to body odor due to its ability to break down sweat components, underscoring its significance in both culinary and microbiological contexts." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium linens Positive Rod Aerobe arsenic-contaminated well water; groundwater; rind of a Danish Danbo cheese Nonsporulating 1703 FXZA00000000.1 Bac0000808 Oerskovia turbata str. JCM12123 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Oerskovia Oerskovia turbata 29 mesophilic 1713 SDJQ00000000.1 Bac0000809 Corynebacterium diphtheriae "Corynebacterium diphtheriae is a mesophilic bacterium, preferring temperatures between 25-37°C, and is classified as a heterotroph, relying on external organic sources for energy and carbon. As a chemoheterotroph, it produces energy through the process of cellular respiration, utilizing the energy from glucose and other organic compounds. The bacterium is gram-positive, meaning it retains the stain due to its thick peptidoglycan layer, and its shape is unique, with a characteristic ""coryneform"" morphology, featuring branching, beaded cells. C. diphtheriae is a ubiquitous microbe, found in various body sites across all possible species, including the human throat, skin, and mucous membranes. This bacterium is an obligate aerobe, requiring the presence of oxygen to grow and thrive. It is also a pathogen, capable of causing severe infections, particularly diphtheria, a potentially life-threatening disease characterized by the formation of a thick, grayish membrane on the surface of the tonsils and mucous membranes. In addition to its clinical significance, C. diphtheriae has also been recognized for its unique biochemical properties. The bacterium produces several enzymes, including diphtheria toxin, a powerful protein that can cause widespread damage to tissues and disrupt cellular function. This toxin is responsible for the severe symptoms associated with diphtheria, making it a crucial target for vaccine development. Throughout history, C. diphtheriae has played a significant role in shaping human health and medicine. The development of vaccines and antibiotics against this microbe has been instrumental in reducing the global burden of diphtheria, and ongoing research continues to refine our understanding of its biology and pathogenesis." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae Positive Rod No 1 1 Aerobe 37 Mesophilic Multiple 1717 MWRW00000000.1 Bac0000810 Corynebacterium pseudotuberculosis str. PA08 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudotuberculosis Animal 1719 NZ_CP024602.1 Bac0000811 Corynebacterium xerosis Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium xerosis 1725 FWFI00000000.1 Bac0000812 Propionibacterium freudenreichii "Propionibacterium freudenreichii is a thermophilic, heterotrophic microbe that thrives in temperatures ranging from 25°C to 40°C, making it a moderate thermophile. As a heterotroph, it obtains its energy by breaking down organic compounds, specifically peptides and proteins, which are its preferred energy source. P. freudenreichii produces energy through fermentation, a process in which it converts glucose into lactic acid, propionic acid, and carbon dioxide. Its metabolism is typically anaerobic, but it can tolerate oxygen in certain concentrations. Gram-staining reveals P. freudenreichii to be a Gram-positive microbe, characterized by a thick peptidoglycan layer in its cell wall. It is typically rod-shaped, with a width of 0.5-1.0 μm and a length of 2.5-5.0 μm. This microbe can be found in various body sites, including the human gut, skin, and oral cavity, as well as in environmental sources like soil, water, and dairy products. P. freudenreichii is an aerotolerant anaerobe, meaning it can survive in the presence of oxygen but does not require it for growth. In fact, it exhibits optimal growth in oxygen-deprived environments, such as those found in the gut or other anaerobic niches. Propionibacterium freudenreichii has been extensively studied for its role in the production of Swiss cheese, where it is responsible for the characteristic ""eyes"" or holes that develop on the surface of the cheese during fermentation. This process is facilitated by the microbe's capacity to convert citrate into propionic acid, which creates the acidic environment necessary for the formation of these unique features. Moreover, recent research has highlights P. freudenreichii's potential as a probiotic, with studies suggesting it may have beneficial effects on human health, including the modulation of the immune system and the regulation of gut microbiota. Its ability to survive in a variety of environments and its adaptability to different conditions have made it a valuable model organism for studying the evolution of microorganisms and their interactions with their environments." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii Positive Rod No 1 1 Facultative Mesophilic Multiple Free living Nonsporulating 1744 NZ_LT599498.1 Bac0000813 Cutibacterium acnes "Cutibacterium acnes is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found on all body sites in nearly all humans, residing on the skin of various species, and is an obligate anaerobe. The Gram-positive characteristic indicates that its cell wall contains a thick peptidoglycan layer, which retains the crystal violet stain used in the Gram staining procedure, appearing purple under a microscope. Its rod shape, also known as bacillus, allows it to inhabit small pores and follicles on the skin. As a mesophile, Cutibacterium acnes grows best in moderate temperatures, typically between 20-40°C, which is consistent with human body temperature. As a chemoheterotroph, it relies on external sources of organic compounds for energy and carbon, breaking down molecules such as triglycerides and fatty acids. Its presence on all body sites, including the face, chest, and back, makes it a ubiquitous microbe. The obligate anaerobic nature of Cutibacterium acnes means it requires a low-oxygen environment to survive, which is often found in the depths of pores and sebaceous glands. Cutibacterium acnes plays a significant role in the development of acne, as it breaks down sebum and other skin oils, producing compounds that can lead to inflammation and comedone formation. It has been found that certain strains of Cutibacterium acnes can produce enzymes that contribute to the severity of acne, while others may have anti-inflammatory properties." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBXW00000000.1 Bac0000814 Cutibacterium acnes str. 11-78 "Cutibacterium acnes strain 11-78 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0 °C. This microbe is primarily associated with host organisms, suggesting a specific relationship with its host environment, which is typical for many members of the Cutibacterium genus. ↵↵C. acnes is known for its role in the human microbiome, particularly on the skin, where it can contribute to the maintenance of skin health as well as being implicated in various skin conditions. Its anaerobic nature indicates that it metabolizes substrates in the absence of oxygen, a trait that aligns with its ecological niche on human skin and within hair follicles. The ability to survive and proliferate at the human body temperature further underscores its adaptation to a host-associated lifestyle.↵↵The ecological role of C. acnes str. 11-78 may extend beyond mere commensalism, as it may play a crucial role in skin homeostasis by outcompeting pathogenic organisms and contributing to the skin's microbial diversity. Understanding the specific interactions and functions of this strain within the host microbiome could provide insights into its potential influence on skin health and disease." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 NZ_CM008362.1 Bac0000815 Acidipropionibacterium acidipropionici "Acidipropionibacterium acidipropionici is a Gram-positive, rod-shaped bacterium that thrives in mesophilic conditions (optimal growth at 30-37°C), functioning as a chemoheterotroph. This anaerobic organism is primarily found in various dairy environments, especially in the fermentation processes of cheese. It predominantly inhabits the intestines of humans and animals, as well as in fermented foods, contributing to the flavor and texture of numerous dairy products. The Gram-positive nature of Acidipropionibacterium acidipropionici indicates a thicker peptidoglycan layer in its cell wall, which is characteristic of bacteria in this group. This structural feature not only provides rigidity but also plays a crucial role in its survival and resistance to certain environmental stresses. The rod shape allows for efficient nutrient absorption and motility within the anaerobic niches it occupies. Being a mesophilic organism, it optimally thrives in moderate temperatures, aligning well with the environments in which it predominantly exists, such as cheese and dairy fermentation systems. As a chemoheterotroph, Acidipropionibacterium acidipropionici relies on organic compounds for its energy and carbon needs, using fermentation processes to metabolize lactic acid and other substrates. Its obligate anaerobic nature means that it cannot tolerate oxygen, and in fact, thrives in low-oxygen environments, making it ideal for various fermentation processes. Beyond its role in dairy production, Acidipropionibacterium acidipropionici has garnered interest for its potential health benefits. Some research suggests that it may help in gut health by inhibiting pathogenic bacteria, contributing to a balanced microbiome, and even modulating immune responses. Its unique metabolic capabilities also make it a candidate for biotechnological applications, including natural food preservation and probiotic formulations, highlighting its importance both in the culinary and health domains." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Acidipropionibacterium Acidipropionibacterium acidipropionici positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1748 NZ_CP040634.1 Bac0000816 Acidipropionibacterium jensenii "Acidipropionibacterium jensenii is a gram-positive, rod-shaped bacterium that thrives optimally at mesophilic temperatures, functioning as a chemoheterotroph and exhibiting characteristics typical of an obligate anaerobe. This microbe is primarily found in the gastrointestinal tracts of animals, including humans, as well as in various dairy products, where it plays a vital role in fermentation processes. Being gram-positive, A. jensenii possesses a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and resistance to certain environmental factors. The rod-shaped morphology allows for efficient nutrient absorption and metabolic processing, essential for its survival in the anaerobic environments of intestines. As a mesophile, it thrives in moderate temperature ranges, typically between 30°C and 37°C, which aligns with the body temperature of its host organisms. As a chemoheterotroph, A. jensenii metabolizes organic compounds for energy and growth, utilizing carbohydrates and organic acids present in its environment. Its classification as an obligate anaerobe means that it cannot survive in the presence of oxygen, leading to unique adaptations that allow it to thrive in low-oxygen conditions, such as those found in the gastrointestinal tract.In addition to its role in the human and animal gut microbiota, A. jensenii is significant in the dairy industry, contributing to the characteristic flavors and textures of certain cheeses through its production of propionic acid and gas. This microbe also has potential applications in probiotics, where its health benefits, such as enhancing gut health and immune function, are actively being researched. Moreover, its metabolic by-products can play a crucial role in inhibiting pathogenic bacteria, showcasing its importance in maintaining a balanced microbial ecosystem." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Acidipropionibacterium Acidipropionibacterium jensenii positive No 1 Chemoheterotroph Dairy isolate Nonsporulating 1749 NZ_CP025570.1 Bac0000817 Arachnia propionica "Pseudopropionibacterium propionicum is a gram-positive, rod-shaped bacterium classified as a mesophilic heterotroph and is an obligate anaerobe. This microbe thrives in environments devoid of oxygen, predominantly found in various anaerobic habitats, including the human gut and the oral cavity, but it can also be isolated from dairy products and soil. As a gram-positive organism, Pseudopropionibacterium propionicum retains the crystal violet stain used in the Gram staining procedure, appearing purple under a microscope. Its rod-like shape contributes to its ability to form clusters or chains, facilitating its survival in anaerobic conditions. Being mesophilic, it grows optimally at moderate temperatures, generally around 30-37°C, which aligns with the body temperatures found in many mammals, including humans. As a heterotroph, Pseudopropionibacterium propionicum requires organic compounds for growth, primarily utilizing carbohydrates and other organic substrates. This metabolic characteristic enables it to thrive in nutrient-rich environments such as the gastrointestinal tract. Its classification as an obligate anaerobe highlights its inability to survive in the presence of oxygen, as oxygen is toxic to its cellular processes. Pseudopropionibacterium propionicum plays a significant role in the fermentation process, particularly in dairy, as it is involved in the production of propionic acid, a key preservative and flavoring agent in certain cheeses, such as Emmental. Additionally, its presence in the human microbiome contributes to maintaining gut health and balance by participating in the complex interplay of microbial communities. This bacterium's unique metabolic pathways and adaptations to anaerobic environments make it a fascinating subject of study in microbiology and food science." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Arachnia Arachnia propionica Positive Rod No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 1750 RQZG00000000.1 Bac0000818 Propionibacterium freudenreichii subsp. shermanii "Propionibacterium freudenreichii subsp. shermanii is a Gram-positive, nonsporulating rod-shaped bacterium known for its facultative anaerobic metabolism. This microbe can thrive in a variety of habitats, which indicates its adaptability to different environmental conditions. Its facultative nature allows it to utilize both aerobic and anaerobic respiration, enabling it to survive in diverse ecological niches.↵↵P. freudenreichii subsp. shermanii is particularly notable for its role in the dairy industry, where it is commonly used as a starter culture in the production of Swiss cheese. This bacterium is responsible for the development of characteristic flavor profiles and the formation of holes, or 'eyes', in the cheese due to the production of carbon dioxide during fermentation.↵↵Beyond its industrial significance, P. freudenreichii subsp. shermanii may also contribute to the microbiome of the human gut, where its presence is associated with potential health benefits, including the modulation of gut microbiota and the enhancement of immune responses. The adaptability of this organism to various environments, combined with its metabolic versatility, highlights its importance not only in food production but also in understanding microbial interactions in complex ecosystems." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii Positive Rod No 1 1 Facultative Mesophilic Multiple Free living Nonsporulating 1752 NZ_LN997841.1 Bac0000819 Thermoanaerobacter sp. Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter sp. thermophilic 1755 DOPY00000000.1 Bac0000820 Mycobacterium avium "Mycobacterium avium is a mesophilic microbe, preferring temperatures between 25-40°C, and is a heterotroph, deriving its energy from organic molecules. It employs aerobic respiration as its primary method of energy production, utilizing oxygen to break down its carbon-based energy sources. As a Gram-positive bacterium, M. avium's cell wall is composed of a thick peptidoglycan layer, which gives it a distinctive staining characteristic. Its shape is typically coccobacillary, with smooth, non-motile, and non-spore-forming cells. M. avium can be found in various body sites, including the respiratory tract, skin, and gastrointestinal tract, across all mammalian species. Its presence is often asymptomatic, but it can also cause opportunistic infections in individuals with compromised immune systems. The microbe is an obligate aerobe, requiring a constant supply of oxygen to survive. It thrives in environments with moderate to high levels of oxygen, such as the human lung and intestinal tract. One notable characteristic of M. avium is its ability to form biofilms, complex communities of microorganisms attached to surfaces. This allows it to adapt to its environment and resist host immune responses. In addition to its biological characteristics, M. avium has gained significant attention in recent years due to its potential role in the development of disease. The microbe's ability to form biofilms and evade host immune responses makes it a challenging target for treatment, and its presence has been implicated in various respiratory and gastrointestinal disorders. Furthermore, the increasing prevalence of antibiotic-resistant strains has led to increased research into the development of novel therapeutic strategies against M. avium." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1764 NSEV00000000.1 Bac0000821 Mycolicibacterium fortuitum "Mycolicibacterium fortuitum is a Gram-positive, rod-shaped bacterium classified as a mesophile, thriving optimally at moderate temperatures. This organism is a chemoheterotroph, relying on organic compounds for growth, and is categorized as a facultative anaerobe, meaning it can survive in both aerobic and anaerobic environments. Mycolicibacterium fortuitum can be found in a variety of body sites, including the skin, respiratory tract, and in some cases, the gastrointestinal tract, demonstrating its opportunistic nature. As a Gram-positive bacterium, Mycolicibacterium fortuitum possesses a thick peptidoglycan layer in its cell wall, which retains violet dye during the Gram staining process, distinguishing it from Gram-negative organisms. This structural characteristic contributes to its resilience and ability to survive in diverse environments, including soil and water, where it commonly resides as a free-living microbe. Being a mesophile, it prefers temperatures around 30-37°C, which aligns with human body temperature, enhancing its potential as a pathogen, particularly in immunocompromised individuals. Its classification as a chemoheterotroph underscores its dependence on organic substrates for energy and carbon, engaging in metabolic processes that can sometimes lead to opportunistic infections. M. fortuitum is notable for its ability to cause infections, including skin and soft tissue infections, particularly following trauma or surgery. It is often associated with contaminated medical equipment and can be resistant to several antibiotics, complicating treatment options. Its environmental ubiquity and adaptability underscore the importance of maintaining strict hygiene practices in clinical settings to prevent its transmission." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium fortuitum Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Soil Nonsporulating 1766 UGQY00000000.1 Bac0000822 Mycobacterium intracellulare Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 1767 NZ_CP023150.1 Bac0000823 Mycobacterium intracellulare str. 2285 (S) Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 1767 JAOD00000000.1 Bac0000824 Mycobacterium kansasii Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kansasii municipal tap water; natural water systems; soil Human 1768 MVBM00000000.1 Bac0000825 Mycobacterium tuberculosis "Mycobacterium tuberculosis is a thermophilic, chemoorganotrophic organism that is capable of growing between 23-40°C, with an optimal temperature range of 37-38°C. It derives its energy from the breakdown of organic compounds, specifically using glucose as its primary energy source. As a heterotroph, M. tuberculosis relies on the degradation of pre-existing organic molecules for energy and nutrients. The energy production process involves the aerobic breakdown of glucose, resulting in the production of ATP through cellular respiration. The bacterium is gram-positive, meaning it retains the Gram stain and appears purple under microscopy. Its unique, rod-shaped morphology, often referred to as a ""bead-like"" appearance, is due to the presence of a thick, waxy cell wall made of mycolic acids. This cell wall confers resistance to antibiotics and contributes to its slow growth rate. M. tuberculosis is a ubiquitous pathogen that can infect any body site, causing a range of diseases from latent tuberculosis (TB) to active pulmonary or extrapulmonary TB. The bacterium is an obligate aerobe, thriving in the presence of oxygen, and is typically found in the lungs of infected individuals. Historically, M. tuberculosis has been responsible for significant morbidity and mortality worldwide, with the development of antibiotics revolutionizing treatment and control strategies. Despite this, TB remains a significant global health burden, with an estimated 10 million new cases and 1.7 million TB-related deaths annually. One of the most significant challenges in M. tuberculosis research and treatment is the bacterium's ability to form a complex, fibrotic capsule around itself, which impairs the immune system's ability to effectively eliminate the infection. This capsule is composed of a mixture of lipids, proteins, and carbohydrates, which contribute to the bacterium's persistence and pathogenesis." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1773 CHDS00000000.1 Bac0000826 Mycobacteroides chelonae "Mycobacteroides chelonae is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, is classified as a heterotroph, and is an obligate aerobe, requiring oxygen for its metabolic processes. This microbe typically colonizes various body sites, including the skin, respiratory system, and gastrointestinal tract of humans and animals. As a gram-negative bacterium, Mycobacteroides chelonae possesses a thinner peptidoglycan layer compared to gram-positive bacteria, which contributes to its unique structural characteristics and its ability to evade certain immune responses. The rod shape of this microbe favors its motility and adaptation in diverse environments, enhancing its survival in a range of niches. Being mesophilic means it optimally grows at moderate temperatures, around 30 to 37 degrees Celsius, making it well-suited for life in human hosts. As a heterotroph, Mycobacteroides chelonae relies on organic compounds for nourishment, breaking down various substances within its environment to obtain energy. Its status as an obligate aerobe indicates that it requires atmospheric oxygen to carry out aerobic respiration, impacting its habitat preferences, where oxygen availability is essential. In clinical contexts, Mycobacteroides chelonae is recognized for its association with skin and soft tissue infections, particularly in immunocompromised individuals or those with underlying health conditions. The bacterium is notable for its intrinsic resistance to multiple antibiotics, complicating treatment options. It has garnered attention in medical research for its potential role in opportunistic infections, and ongoing investigations aim to understand its pathogenic mechanisms and environmental resilience. This microbe represents an important aspect of the human microbiome, illustrating the complex interactions between commensal organisms and the host." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides chelonae Rod No 1 biofilms; dust; healthcare settings; soil; water; Water Nonsporulating 1774 MLIF00000000.1 Bac0000827 Mycobacteroides chelonae str. ATCC 35752 "Mycobacteroides chelonae str. ATCC 35752 is a rod-shaped bacterium that exhibits nonsporulating characteristics. This organism is commonly found in diverse habitats, including biofilms, dust, healthcare settings, soil, and water. Its ability to thrive in various environments suggests a degree of ecological versatility, allowing it to adapt to both natural and anthropogenic conditions.↵↵The presence of M. chelonae in healthcare settings may be of particular interest, as it indicates potential interactions with human activities and environments, such as the formation of biofilms on medical devices or in water systems. These biofilms can serve as reservoirs for the bacterium, potentially influencing its persistence and transmission dynamics in such settings.↵↵Given its wide distribution, M. chelonae may play a role in the microbial ecology of its habitats, contributing to biogeochemical cycles or influencing the microbial community structure. Its presence in soil and water ecosystems could be pivotal in understanding the interactions among microbial populations and their responses to environmental changes. Further research on M. chelonae could yield insights into its ecological roles and the implications of its presence in both natural and engineered environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides chelonae Rod No 1 biofilms; dust; healthcare settings; soil; water; Water Nonsporulating 1774 NZ_CP010946.1 Bac0000828 Mycobacterium gastri "Mycobacterium gastri is a Gram-positive bacterium characterized by its unique cell wall structure, which is rich in mycolic acids, contributing to its distinctive staining properties and resilience against environmental stressors. As a member of the Mycobacterium genus, this organism is notable for its slow growth rate, typical of many mycobacterial species, which often complicates laboratory isolation and culture.↵↵The Gram-positive nature of Mycobacterium gastri suggests its potential resistance to certain antibiotics that target Gram-negative bacteria. This characteristic may influence its interactions with other microbial communities and its survival in various environments. While specific pathogenicity and ecological roles have not been detailed, the presence of Mycobacterium species in diverse habitats hints at a possible niche filled by M. gastri, potentially involving interactions with host organisms or other microbial flora.↵↵Furthermore, its resilience might facilitate its persistence in specific environments, such as those with high organic content or varied nutrient availability. The unique structural features of M. gastri may also suggest an adaptive advantage in competing with other microorganisms under challenging conditions. Understanding the biology and ecology of Mycobacterium gastri could provide insights into its role in microbial ecosystems and its potential applications in biotechnology or environmental studies." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium gastri positive 1777 LQOX00000000.1 Bac0000829 Mycobacterium gordonae Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium gordonae biofilms; Fresh water; laboratory faucets; pipelines; soil; water in the humidifier reservoir; well water 1778 LQOY00000000.1 Bac0000830 Mycobacterium marinum "Mycobacterium marinum is a Gram-positive, nonsporulating bacterium that thrives in various aquatic environments, including freshwater and marine habitats, as well as in brackish water and domestic aquaria. This microorganism exhibits an optimal growth temperature of 30°C, which aligns with the typical temperatures found in many aquatic ecosystems and pools. Being an aerobic organism, M. marinum requires oxygen for its metabolic processes, which influences its distribution in well-oxygenated water bodies.↵↵This bacterium is frequently associated with aquaria, where it can be found in both freshwater and marine systems, suggesting a potential role in the microbiome of these environments. Its presence in soil indicates a possible connection to terrestrial ecosystems, although its primary habitats are aquatic. The adaptability of M. marinum to various water conditions may contribute to its ecological significance, particularly in the maintenance of microbial diversity and nutrient cycling in these habitats.↵↵Overall, the ecological versatility of Mycobacterium marinum highlights its potential role in aquatic microbial communities, where it may interact with a range of other microorganisms and contribute to the health of the ecosystems it inhabits. Understanding its environmental preferences could provide insights into the dynamics of microbial populations in aquaria and natural bodies of water." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium marinum positive Yes aerobic 30 aquaria; aquariums; aquatic environments; brackish water; domestic aquarium; Fresh water; Marine; pools; soil Nonsporulating Animal 1781 PEDF00000000.1 Bac0000831 Mycolicibacter nonchromogenicus Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter nonchromogenicus environment; environmental samples; environments 1782 LQPI00000000.1 Bac0000832 Mycobacterium sp. "Mycobacterium sp. is a genus of Gram-positive, rod-shaped bacteria that are primarily aerobic in nature. Characterized by their thick, waxy cell wall, which contains mycolic acids, these organisms exhibit a unique resilience to environmental stresses and are known for their slow growth rates. The aerobic requirement indicates that Mycobacterium sp. thrive in oxygen-rich environments, which is a significant factor in their metabolic processes.↵↵In terms of morphology, Mycobacterium species typically display a slender rod shape, allowing them to occupy specific niches within various ecological contexts. The Gram-positive nature of these bacteria is indicative of their cell wall structure, which plays a crucial role in their survival and pathogenicity mechanisms, although this description does not delve into specific pathogenic traits or ecological roles.↵↵Interestingly, the environmental adaptability of Mycobacterium sp. enables them to survive in diverse habitats, ranging from soil and water to more specialized environments such as human and animal hosts. This adaptability may also facilitate their interactions with other microbial communities, contributing to the biogeochemical cycling of nutrients. The unique combination of aerobic metabolism and a robust cell wall structure positions Mycobacterium sp. as significant players in both environmental microbiology and potential clinical microbiology contexts, underscoring the importance of further research into their ecological roles and interactions." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. positive Rod aerobic 1785 PEQP00000000.1 Bac0000833 Mycolicibacterium sphagni str. ATCC 33027 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sphagni 1786 NOZR00000000.1 Bac0000834 Mycobacterium asiaticum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium asiaticum environmental water 1790 LZLR00000000.1 Bac0000835 Mycolicibacterium chitae Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium chitae 1792 NZ_LR134355.1 Bac0000836 Mycolicibacterium fallax Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium fallax 1793 LQOJ00000000.1 Bac0000837 Mycolicibacterium neoaurum str. ATCC 25795 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium neoaurum 1795 CCDR000000000.1 Bac0000838 Mycolicibacterium chubuense str. DSM 44219 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium chubuense 1800 JYNX00000000.1 Bac0000839 Mycolicibacterium diernhoferi Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium diernhoferi 1801 MIJD00000000.1 Bac0000840 Nocardia otitidiscaviarum "Nocardia otitidiscaviarum is a Gram-positive bacterium characterized by its non-spore-forming nature and optimal growth temperature of 37.0°C. This actinobacterial species is part of the genus Nocardia, which is known for its filamentous morphology and presence in various environmental niches. The Gram-positive nature of N. otitidiscaviarum suggests a thicker peptidoglycan layer in its cell wall, which may contribute to its resilience under certain conditions.↵↵The optimal temperature of 37.0°C indicates that N. otitidiscaviarum may thrive in warm-blooded hosts or environments that mimic mammalian body temperature, reflecting its potential adaptability to a range of habitats. While its non-spore-forming trait suggests a reliance on vegetative growth for survival and reproduction, the ecological implications of this characteristic may include a limited ability to withstand extreme environmental stresses compared to spore-forming bacteria.↵↵Nocardia species, including N. otitidiscaviarum, are often found in soil and decaying organic matter, where they play a role in the degradation of complex organic compounds. This ecological function underscores their importance in nutrient cycling within terrestrial ecosystems. The growth characteristics and environmental adaptability of N. otitidiscaviarum may provide insights into its potential interactions with other microbial communities and its role in soil health and ecosystem stability." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia otitidiscaviarum positive 37 mesophilic non-spore-forming 1823 UGRY00000000.1 Bac0000841 Rhodococcoides fascians "Rhodococcoides fascians is a Gram-positive bacterium characterized by its coccoid shape. This microbe is notable for its unique morphological and physiological traits, which contribute to its classification within the broader context of microbial diversity. As a Gram-positive organism, R. fascians possesses a thick peptidoglycan layer in its cell wall, which is a defining feature of this group and is indicative of its structural integrity and potential resistance to certain environmental stresses.↵↵The coccoid morphology of R. fascians suggests that it may exhibit specific growth patterns and arrangements, potentially influencing its ecological interactions. Such arrangements can play a role in forming biofilms or colonies, which may enhance its survival in various habitats. The isolation and characterization of R. fascians may provide insights into its functional roles in microbial communities and its interactions with other organisms in its environment.↵↵While the ecological niche of R. fascians is not explicitly defined in the available data, its Gram-positive nature and cocci shape imply that it may participate in important biogeochemical cycles. Furthermore, understanding the traits of R. fascians could lead to a broader comprehension of microbial physiology and diversity in similar habitats, as well as the evolutionary adaptations that allow such organisms to thrive." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians positive Cocci 1828 NZ_CP015221.1 Bac0000842 Rhodococcus rhodochrous "Rhodococcus rhodochrous is a gram-positive, rod-shaped bacterium that thrives in moderate temperatures, fits into the category of heterotrophs, and is classified as a facultative anaerobe. This versatile microbe is predominantly found in soil and is known for its ability to degrade a wide variety of organic compounds, including pollutants such as aromatic hydrocarbons and various industrial solvents. As a gram-positive organism, R. rhodochrous possesses a thick peptidoglycan layer in its cell wall, which contributes to its staining characteristics and plays a crucial role in its resilience against environmental stresses. Its rod shape allows for efficient nutrient uptake and motility, which is essential in its natural habitat. Being a heterotroph, R. rhodochrous relies on organic carbon sources for growth, demonstrating an impressive metabolic flexibility that allows it to adapt to various ecological niches. As a facultative anaerobe, this bacterium can survive in the presence or absence of oxygen, which enables it to colonize diverse environments, from well-aerated soils to oxygen-poor habitats. Its metabolic versatility allows it to utilize different pathways to generate energy depending on the availability of oxygen, further enhancing its adaptability. Rhodococcus rhodochrous is notable not only for its biodegradation capabilities but also for its potential in bioremediation strategies. Its enzymes can break down complex pollutants, making it a valuable asset in cleaning up contaminated sites. Moreover, this microbe has been recognized for its potential applications in biotechnological processes, including the production of valuable metabolites and bioconversion of organic materials into biofuels, highlighting its importance in environmental and industrial microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia farcinica Positive Cocci No 1 1 Aerobe 37 Chemoheterotroph Mesophilic Soil Free living Filaments Nonsporulating 1829 UGVK00000000.1 Bac0000843 Rhodococcus rhodochrous str. 11Y "Rhodococcus rhodochrous strain 11Y is a Gram-positive, nonsporulating cocci that thrives as a chemoheterotroph in aerobic environments, particularly in soil habitats. This bacterium is characterized by its ability to utilize organic compounds as its energy source, suggesting a versatile metabolic capacity that allows it to adapt to various organic substrates typically found in terrestrial ecosystems. The aerobic nature of R. rhodochrous str. 11Y indicates its dependence on oxygen for growth and energy production, which is a critical factor in its ecological niche.↵↵The presence of this strain in soil environments may play a significant role in nutrient cycling, particularly in the degradation of complex organic materials. As a soil-dwelling microbe, R. rhodochrous str. 11Y could contribute to the breakdown of organic pollutants, enhancing soil health and fertility. The metabolic versatility of this organism may also facilitate its interactions with other soil microorganisms, potentially influencing community dynamics and the overall microbial ecology of its habitat. Understanding the specific contributions of R. rhodochrous str. 11Y to soil ecosystems can provide insights into its role in bioremediation processes or nutrient cycling, emphasizing its ecological significance in maintaining soil health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus rhodochrous Positive Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 1829 JNVR00000000.1 Bac0000844 Rhodococcus rhodochrous str. EP4 "Rhodococcus rhodochrous str. EP4 is a Gram-positive, coccoid bacterium that thrives in soil environments and is classified as an aerobic chemoheterotroph. This strain is characterized by its nonsporulating nature, which differentiates it from other members of the genus that may exhibit sporulation. As an aerobe, R. rhodochrous str. EP4 requires oxygen for growth, utilizing organic compounds as its primary energy source.↵↵The ecological role of R. rhodochrous str. EP4 in soil ecosystems is potentially significant, given its adaptation to aerobic conditions and its ability to metabolize a variety of organic substrates. This metabolic versatility suggests a capacity for participating in nutrient cycling and organic matter decomposition within its habitat. Additionally, the nonsporulating characteristic may reflect an ecological strategy that prioritizes growth and reproduction in stable environments where sporulation is less advantageous.↵↵Overall, the traits of R. rhodochrous str. EP4 highlight its specialized adaptations to soil habitats, contributing to the complex dynamics of microbial communities and their functions in terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus rhodochrous Positive Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 1829 NZ_CP032221.1 Bac0000845 Rhodococcus ruber str. R1 "Rhodococcus ruber str. R1 is a Gram-positive bacterium commonly found in soil environments. This microorganism is characterized by its ability to degrade various organic compounds, which contributes to its ecological role in the biogeochemical cycling of nutrients within terrestrial ecosystems. ↵↵As a member of the genus Rhodococcus, R. ruber str. R1 exhibits notable metabolic versatility, enabling it to utilize a range of substrates for growth. This adaptability not only facilitates its survival in diverse soil conditions but also positions it as a potential candidate for bioremediation applications, especially in the breakdown of pollutants. ↵↵The presence of R. ruber str. R1 in soil highlights its significance in maintaining soil health and fertility, as its metabolic activities can enhance the availability of nutrients for other soil organisms. Furthermore, the bacterium's interactions with other microbial communities may influence soil structure and function, thereby playing a crucial role in the ecosystem dynamics of soil habitats. Understanding the ecological functions of R. ruber str. R1 could provide insights into its potential applications in sustainable agricultural practices and environmental management strategies." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus ruber positive Soil 1830 NZ_CP038030.2 Bac0000846 Rhodococcus ruber str. YYL "Rhodococcus ruber strain YYL is a Gram-positive bacterium predominantly found in soil environments. This microbe is part of the diverse Rhodococcus genus, known for its robust metabolic capabilities and adaptability to various ecological niches. As a soil-dwelling organism, R. ruber str. YYL contributes to the microbial community dynamics and plays a role in nutrient cycling, particularly in the degradation of organic compounds. ↵↵The Gram-positive nature of R. ruber str. YYL suggests a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection against environmental stresses. This trait is characteristic of many soil bacteria, enabling them to thrive in fluctuating conditions commonly encountered in terrestrial habitats. ↵↵Rhodococcus species are also noted for their potential in bioremediation applications, owing to their enzymatic capabilities that allow them to degrade a wide range of pollutants. While the specific metabolic pathways of R. ruber str. YYL are not detailed here, the strain likely exhibits similar versatility, reflecting the broader functional traits observed in the genus.↵↵Overall, the ecological role of R. ruber str. YYL in soil environments may extend beyond nutrient cycling to include interactions with other soil microorganisms, thereby influencing soil health and ecosystem resilience. Understanding the specific contributions of this strain to soil microbiomes could provide insights into its potential applications in environmental biotechnology and sustainable agriculture." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus ruber positive Soil 1830 NZ_CP024892.1 Bac0000847 Rhodococcus ruber "Rhodococcus ruber is a Gram-positive bacterium commonly found in soil environments. This microbe is characterized by its rod-shaped morphology and its ability to thrive in diverse ecological niches, particularly in terrestrial habitats. R. ruber exhibits notable metabolic versatility, which enables it to utilize a wide range of organic compounds as carbon sources, thereby contributing to soil health and nutrient cycling.↵↵The organism's adaptation to soil environments may be linked to its capability for biodegradation, allowing it to break down various xenobiotic compounds, including hydrocarbons and other pollutants. This trait not only highlights its potential role in bioremediation but also underscores its significance in maintaining soil quality and ecological balance.↵↵R. ruber's presence in soil ecosystems suggests a potential symbiotic relationship with plants and other soil microorganisms, which can enhance nutrient availability and promote plant growth. The bacterium's ability to survive in varying environmental conditions further emphasizes its ecological resilience and importance in soil microbiology. Overall, R. ruber serves as a key player in the intricate web of soil microbial communities, contributing to both ecological stability and environmental sustainability." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus ruber positive Soil 1830 NZ_CP023712.1 Bac0000848 Rhodococcus erythropolis str. DSM 46869 "Rhodococcus erythropolis strain DSM 46869 is a Gram-positive, rod-shaped bacterium that typically forms filamentous arrangements. This aerobic microbe thrives optimally at a temperature of 20.0°C, indicating its potential preference for temperate environments. R. erythropolis exhibits a versatile habitat, being found in diverse ecological niches, which may include soil and other environments rich in organic matter.↵↵This strain is characterized by its filamentous growth, a trait that may enhance its surface area for nutrient absorption and interaction with its surroundings. The ability to form filaments could also facilitate the establishment of complex microbial communities, enabling R. erythropolis to engage in cooperative behaviors that are beneficial in various ecological contexts.↵↵Given its aerobic nature, R. erythropolis strain DSM 46869 likely plays a significant role in biogeochemical cycles, particularly in the degradation of organic compounds. Its adaptability to multiple habitats suggests it may be involved in the bioremediation processes, where it can contribute to the breakdown of pollutants in contaminated environments. Understanding the specific ecological roles of this strain could provide insights into its potential applications in environmental biotechnology and industrial processes." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 1833 NZ_CP011295.1 Bac0000849 Rhodococcus erythropolis str. IEGM 267 "Rhodococcus erythropolis str. IEGM 267 is a Gram-positive bacterium characterized by its rod shape and filamentous cell arrangement. This strain thrives optimally at a temperature of 20.0°C and exhibits aerobic metabolism, indicating that it requires oxygen for growth. R. erythropolis is known to inhabit a variety of environments, reflecting its versatile ecological adaptations.↵↵The filamentous structure of R. erythropolis str. IEGM 267 may facilitate its survival in diverse habitats by enhancing its ability to access nutrients and interact with other microbial communities. This morphological trait, combined with its aerobic nature, suggests that it may play a role in the degradation of organic compounds in oxygen-rich environments. Such characteristics could make R. erythropolis str. IEGM 267 a candidate for biotechnological applications, particularly in bioremediation processes where the breakdown of pollutants in aerobic conditions is required.↵↵Overall, the adaptability of R. erythropolis str. IEGM 267 to multiple habitats underscores its potential significance in microbial ecology and environmental microbiology, particularly in the context of nutrient cycling and pollutant degradation in aerobic environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 1833 MRBQ00000000.1 Bac0000850 Nocardioides luteus str. BAFB Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides luteus aerobic 29 mesophilic 1844 JZDQ00000000.2 Bac0000851 Dermatophilus congolensis Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Dermatophilus Dermatophilus congolensis aerobic 37 mesophilic 1863 UFYA00000000.1 Bac0000852 Micromonospora echinospora Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora echinospora 29 mesophilic 1877 NZ_LT607413.1 Bac0000853 Streptomyces albidoflavus "Streptomyces albidoflavus is a Gram-positive bacterium belonging to the genus Streptomyces, which is known for its filamentous growth and complex life cycle. As a member of this genus, S. albidoflavus exhibits characteristic features typical of Streptomyces species, including the production of a range of secondary metabolites that may possess antimicrobial properties.↵↵The Gram-positive nature of S. albidoflavus indicates a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and influences its interactions with the environment. Members of the Streptomyces genus are often found in soil and decaying organic matter, where they play a crucial role in the decomposition of complex organic materials, thereby enriching the soil nutrient content.↵↵Additionally, Streptomyces species are known for their ability to produce a variety of bioactive compounds, including antibiotics and enzymes, which can have significant implications for biotechnology and pharmaceutical applications. The unique metabolic capabilities of S. albidoflavus may offer opportunities for the discovery of novel substances with potential therapeutic uses.↵↵In the broader context of microbiological research, S. albidoflavus exemplifies the ecological importance of soil-dwelling actinomycetes in nutrient cycling and their potential as a source of biologically active compounds. This highlights the need for further exploration of the ecological roles of such microorganisms in soil ecosystems and their contributions to biogeochemical processes." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKLO00000000.1 Bac0000854 Streptomyces antibioticus str. DSM 40234 "Streptomyces antibioticus str. DSM 40234 is a Gram-positive bacterium belonging to the Streptomyces genus, renowned for its capacity to produce a variety of bioactive compounds, including antibiotics. This strain is characterized by its filamentous growth form, typical of the Streptomyces genus, which facilitates its adaptation to terrestrial environments. ↵↵The Gram-positive nature of S. antibioticus str. DSM 40234 suggests a robust cell wall structure predominantly composed of peptidoglycan, contributing to its resilience against environmental stressors. This structural characteristic may play a role in its competitive survival in soil ecosystems, where it interacts with various microbial communities.↵↵Streptomyces species, including S. antibioticus, are well-documented for their ability to produce secondary metabolites, making them critical players in biotechnological applications, particularly in antibiotic production. The metabolic versatility of this strain underscores its potential for bioprospecting and the development of novel antimicrobial agents.↵↵Additionally, the ecological role of S. antibioticus str. DSM 40234 can be inferred from its ability to decompose organic matter, contributing to nutrient cycling within its habitat. This dual role as a producer of biologically active compounds and as a decomposer highlights its significance in maintaining ecological balance in soil environments. Such traits position Streptomyces antibioticus str. DSM 40234 as a valuable organism for further study in microbiological and biotechnological research." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces antibioticus Positive 1890 LMWQ00000000.1 Bac0000855 Streptomyces antibioticus "Streptomyces antibioticus is a Gram-positive bacterium notable for its ability to produce a variety of bioactive compounds, including the antibiotic streptomycin. This filamentous microbe belongs to the genus Streptomyces, which is well-known for its role in natural antibiotic production and soil ecology. Characteristically, S. antibioticus exhibits a complex life cycle that includes the formation of mycelium and spores, contributing to its resilience in various environments.↵↵The Gram-positive nature of S. antibioticus is indicative of its thick peptidoglycan layer, which is a common feature among members of this genus and plays a critical role in maintaining cell integrity. This structural characteristic is essential for its survival in competitive microbial communities, particularly in soil environments where it can engage in interactions with other microorganisms.↵↵S. antibioticus is primarily recognized for its production of streptomycin, an aminoglycoside antibiotic that has been instrumental in the treatment of bacterial infections, particularly those caused by Mycobacterium tuberculosis. The ability of this bacterium to synthesize such potent compounds highlights its ecological significance, as it may contribute to the regulation of microbial populations in its natural habitat.↵↵In summary, Streptomyces antibioticus exemplifies the intricate relationships between microbial physiology, antibiotic production, and ecological interactions, underscoring the importance of soil-dwelling actinomycetes in both health and disease management." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces antibioticus Positive 1890 LGUX00000000.1 Bac0000856 Streptomyces atratus str. SCSIO_ZH16 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces atratus 1893 NZ_CP027306.1 Bac0000857 Streptomyces atratus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces atratus 1893 FPJO00000000.1 Bac0000858 Kitasatospora aureofaciens Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora aureofaciens soil 1894 LGUY00000000.1 Bac0000859 Streptomyces globisporus str. TFH56 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces globisporus 1908 NZ_CP029362.1 Bac0000860 Streptomyces globisporus str. 1912-4Crt Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces globisporus 1908 QWFA00000000.1 Bac0000861 Streptomyces reticuli Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces reticuli 1926 NZ_LN997845.1 Bac0000862 Streptomyces rimosus "**Streptomyces rimosus** is a Gram-positive bacterium primarily found in soil environments. This actinobacterium is notable for its filamentous morphology, which is characteristic of the genus Streptomyces. As a member of this group, **S. rimosus** plays a significant role in soil ecology, contributing to the decomposition of organic matter and nutrient cycling.↵↵One of the defining traits of **S. rimosus** is its ability to produce a variety of secondary metabolites, including antibiotics such as oxytetracycline, which have important applications in medicine and agriculture. This metabolic versatility underscores its ecological role as a competitive organism within its habitat, where it may inhibit the growth of other microorganisms through the production of these bioactive compounds.↵↵The presence of **S. rimosus** in soil not only highlights its potential for biotechnological applications but also emphasizes the importance of actinobacteria in maintaining soil health and fertility. By mediating interactions within the microbial community, **S. rimosus** may influence the dynamics of microbial diversity and succession in terrestrial ecosystems, illustrating the intricate relationships between soil microorganisms and their environment." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rimosus Positive soil 1927 NZ_CP025551.1 Bac0000863 Streptomyces scabiei "Streptomyces scabiei is a Gram-positive, aerobic bacterium characterized by its tailed morphology and ability to undergo sporulation. This microbe is part of the diverse genus Streptomyces, which is renowned for its role in soil ecosystems and its capacity to produce a wide range of bioactive compounds. As a terrestrial inhabitant, S. scabiei thrives in soil environments, where it contributes to the complex interactions within microbial communities.↵↵The sporulating nature of S. scabiei enables it to survive in varying environmental conditions, allowing it to persist in terrestrial habitats. This trait is essential for its dissemination and colonization capabilities. The tailed shape of the bacterium may facilitate its motility or interaction with other microorganisms in the soil matrix, although specific functions associated with this morphology are not well-documented.↵↵Overall, Streptomyces scabiei exemplifies the ecological significance of soil-dwelling microorganisms, particularly in nutrient cycling and the development of soil health. Its ability to sporulate and adapt to aerobic conditions underscores its potential role in influencing microbial diversity and dynamics within terrestrial ecosystems. Understanding the traits and behaviors of such microbes can provide insights into their contributions to soil fertility and plant health, representing an important area for further research." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces scabiei Positive Tailed Yes Aerobic Mesophilic Terrestrial Free living Sporulating Plant 1930 BCMM00000000.1 Bac0000864 Streptomyces sp. "Streptomyces sp. is a Gram-positive bacterium commonly found in the rhizosphere of Arugula and in various soil environments. Characterized by its filamentous structure, Streptomyces species are known for their complex life cycles, which include the formation of spores that contribute to their survival and dispersal in diverse ecological niches. These bacteria play a crucial role in soil ecosystems, where they are involved in the decomposition of organic materials and nutrient cycling.↵↵The presence of Streptomyces in the rhizosphere indicates its potential interactions with plant roots, which may enhance soil health and promote plant growth through mechanisms such as nutrient mobilization and the production of bioactive compounds. Additionally, Streptomyces species are renowned for their ability to produce a wide array of secondary metabolites, many of which have significant pharmaceutical applications, including antibiotics and antifungals. This trait underscores their importance not only in ecological contexts but also in biotechnological and medical fields.↵↵The unique ecological role of Streptomyces sp. within the rhizosphere of Arugula may contribute to the plant's health and resilience, highlighting the symbiotic relationships that can exist between soil microorganisms and higher plants. Understanding these interactions could provide insights into sustainable agricultural practices, particularly in enhancing crop yields and soil fertility through the management of microbial communities." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Positive Rhizosphere of Arugula; soil 1931 DNQU00000000.1 Bac0000865 Streptomyces violaceoruber str. S21 "Streptomyces violaceoruber strain S21 is a Gram-positive, spore-forming bacterium that thrives optimally at a temperature of 29.0°C. It belongs to the genus Streptomyces, which is renowned for its ability to produce a wide array of bioactive compounds, including antibiotics and other secondary metabolites. The Gram-positive nature of S. violaceoruber str. S21 suggests a thick peptidoglycan layer in its cell wall, characteristic of this genus, which may contribute to its resilience in various environments.↵↵Being a spore-forming organism, S. violaceoruber str. S21 likely possesses mechanisms that enable it to survive adverse conditions, such as desiccation and nutrient scarcity, by entering a dormant state. This capability not only aids in its survival but also plays a crucial role in its dispersal and colonization of new habitats. ↵↵The optimal growth temperature of 29.0°C indicates that S. violaceoruber str. S21 is well-suited for environments that maintain moderate temperatures, which may include soil ecosystems or plant-associated niches. Given the ecological role of Streptomyces species in soil health and nutrient cycling, it is plausible that this strain participates in the degradation of organic matter and the promotion of plant growth through its metabolic activities. Overall, S. violaceoruber str. S21 exemplifies the ecological versatility and metabolic potential characteristic of the Streptomyces genus, highlighting its importance in microbial communities and potential applications in biotechnology." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces violaceoruber Positive 29 mesophilic spore-forming 1935 NZ_CP020570.1 Bac0000866 Streptomyces griseoruber str. DSM 40281 "Streptomyces griseoruber str. DSM 40281 is a Gram-positive bacterium that thrives optimally at a temperature of 29.0°C. This species belongs to the genus Streptomyces, which is renowned for its filamentous growth and complex life cycle. As a member of the Actinobacteria phylum, S. griseoruber exhibits the characteristic mycelial structure typical of this group, which is pivotal for its role in soil ecosystems.↵↵The Gram-positive nature of S. griseoruber indicates a thick peptidoglycan layer in its cell wall, which is a hallmark of its resilience and adaptability to various environmental conditions. This structural feature also plays a crucial role in the bacterium's interactions with its surroundings, including potential contributions to soil health and nutrient cycling.↵↵Understanding the optimal growth temperature of 29.0°C can provide insights into the ecological niches that S. griseoruber may occupy. This temperature preference suggests that it may thrive in temperate environments, where it can participate actively in the decomposition of organic matter. The ecological role of S. griseoruber in nutrient recycling and organic matter degradation highlights its potential importance in maintaining soil fertility and health, essential for sustainable agricultural practices. Further research into this strain may uncover additional functional capabilities and biotechnological applications, particularly in the production of bioactive compounds." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseoruber Positive 29 mesophilic 1943 LMWW00000000.1 Bac0000867 Streptomyces kasugaensis str. AM-2504 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces kasugaensis non-spore-forming 1946 SIXH00000000.1 Bac0000868 Streptomyces noursei "Streptomyces noursei is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its ability to produce a variety of bioactive compounds. This actinobacterium is notable for its complex life cycle and filamentous growth, characteristics typical of the Streptomyces genus. As a soil-dwelling organism, S. noursei plays a significant role in the decomposition of organic matter, contributing to nutrient cycling within its ecosystem.↵↵The organism's ability to produce secondary metabolites is of particular interest, as it has been implicated in the synthesis of antibiotics, which are critical in medical and agricultural applications. This trait underlines the importance of S. noursei not only in microbial ecology but also in biotechnological research, where it serves as a model organism for studying antibiotic production pathways.↵↵In addition to its biotechnological significance, S. noursei's filamentous structure allows for efficient resource utilization in diverse environments, demonstrating its adaptability to various soil conditions. This adaptability may enhance its ecological role in promoting soil health and microbial diversity. Overall, Streptomyces noursei exemplifies the intricate relationships within soil ecosystems and highlights the potential for harnessing its properties for therapeutic and agricultural innovations." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces noursei Positive 1971 LWBU00000000.1 Bac0000869 Actinomadura madurae Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura madurae 37 mesophilic 1993 FOVH00000000.1 Bac0000870 Thermoactinomyces vulgaris "Thermoactinomyces vulgaris is a Gram-positive, filamentous bacterium that thrives in aerobic environments, primarily found in decaying straw and manure. This microbe is notable for its ability to degrade complex organic materials, contributing to the nutrient cycling processes within its habitat. The filamentous morphology of Thermoactinomyces vulgaris allows for an extensive surface area, which may facilitate efficient nutrient absorption and interaction with other microbial communities in its environment.↵↵As an aerobic organism, Thermoactinomyces vulgaris necessitates the presence of oxygen for growth and metabolic processes, making it a crucial player in the decomposition of organic matter. The degradation of straw and manure not only supports the organism's growth but also plays a significant role in soil health and fertility, by recycling nutrients back into the ecosystem. Furthermore, the presence of Thermoactinomyces vulgaris in these environments suggests that it may be involved in the breakdown of lignocellulosic materials, potentially aiding in processes such as composting and enhancing soil structure.↵↵In summary, Thermoactinomyces vulgaris exemplifies the intricate interplay between microbial life and the decomposition of organic matter, underscoring the importance of filamentous bacteria in maintaining ecological balance and promoting nutrient availability within their habitats." Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Thermoactinomyces Thermoactinomyces vulgaris positive Filamentous aerobic thermophilic decaying straw; manure 2026 LGKI00000000.1 Bac0000871 Kibdelosporangium aridum Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kibdelosporangium Kibdelosporangium aridum 29 mesophilic spore-forming / non-spore-forming 2030 QHKI00000000.1 Bac0000872 Microbacterium testaceum str. RSA3 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium testaceum 2033 LDRV00000000.1 Bac0000873 Microbacterium testaceum str. TPD7010 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium testaceum 2033 QDFT00000000.1 Bac0000874 Curtobacterium flaccumfaciens str. JUb65 "Curtobacterium flaccumfaciens str. JUb65 is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. This strain is part of the Curtobacterium genus, which is known for its diverse metabolic capabilities and ecological roles. As a member of this taxonomic group, C. flaccumfaciens str. JUb65 may participate in various biological processes, including the degradation of organic materials and potential interactions with plant systems, although specific interactions have not been detailed for this strain.↵↵The aerobic nature of C. flaccumfaciens str. JUb65 suggests its reliance on oxygen for respiration, which could influence its habitat preferences and competitive dynamics with other microorganisms in its environment. This trait also implies potential applications in bioremediation or agricultural settings, where oxygen availability can be a crucial factor in microbial activity.↵↵As research progresses, further exploration of C. flaccumfaciens str. JUb65 may reveal novel insights into its metabolic pathways and interactions with other organisms, particularly in soil ecosystems. Understanding the specific roles and capabilities of this strain could contribute to broader knowledge regarding the ecological functions of Gram-positive, aerobic bacteria in various habitats." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium flaccumfaciens Positive Aerobe 2035 SNVW00000000.1 Bac0000875 Curtobacterium citreum str. NS330 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium citreum microaerophile 29 mesophilic 2036 LDQB00000000.1 Bac0000876 Aeromicrobium erythreum str. AR18 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium erythreum 37 mesophilic 2041 NZ_CP011502.1 Bac0000877 Pimelobacter simplex "Pimelobacter simplex is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits an aerobic metabolism. This microbe has been identified in a variety of environments, including deteriorated mural paintings, oil-contaminated soil, oil-contaminated sea sediment, and the rhizosphere and roots of pine trees. Its presence in these diverse habitats suggests a notable adaptability to different ecological niches, particularly those affected by organic contamination.↵↵The isolation of Pimelobacter simplex from oil-contaminated environments indicates a potential role in the degradation of hydrocarbons, which may contribute to bioremediation efforts in polluted sites. Furthermore, its association with the rhizosphere of pine trees highlights its possible involvement in plant-microbe interactions, potentially influencing nutrient cycling or soil health. This dual capacity to thrive in both contaminated and natural environments underscores the ecological versatility of Pimelobacter simplex, making it an interesting subject for further study in microbial ecology and environmental microbiology." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Pimelobacter Pimelobacter simplex positive Rod aerobic deteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil Nonsporulating 2045 FOUK00000000.1 Bac0000878 Pimelobacter simplex str. VKM Ac-2033D "Pimelobacter simplex strain VKM Ac-2033D is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in aerobic environments. This microbe has been isolated from diverse habitats, including deteriorated mural paintings, oil-contaminated soil and sea sediment, as well as the rhizosphere and roots of pine trees. ↵↵The presence of Pimelobacter simplex in oil-contaminated environments suggests a potential role in biodegradation processes, where it may contribute to the breakdown of hydrocarbons. Its association with pine tree rhizospheres indicates possible interactions with plant roots, which may facilitate nutrient exchange or influence microbial community dynamics in forest ecosystems. ↵↵Overall, the adaptability of Pimelobacter simplex to various environments, particularly those impacted by anthropogenic activities, highlights its potential significance in bioremediation efforts and the maintenance of ecological balance in contaminated sites. Further research into its metabolic pathways could provide insights into its functional roles within these diverse habitats." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Pimelobacter Pimelobacter simplex positive Rod aerobic deteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil Nonsporulating 2045 NZ_CP009896.1 Bac0000879 Rothia aeria "Rothia aeria is a Gram-positive coccus that is categorized as a nonsporulating microbe, demonstrating aerobic respiration. This bacterium is primarily host-associated, suggesting a potential relationship with specific hosts. The spherical shape of Rothia aeria contributes to its classification within the broader group of cocci, which includes a variety of other bacteria exhibiting similar morphological characteristics.↵↵As an aerobe, Rothia aeria requires oxygen for growth and metabolism, which influences its ecological niche and interactions within host environments. The host-associated habitat indicates that Rothia aeria may play a role in the microbial communities found in or on specific organisms, potentially contributing to host health or influencing microbial dynamics.↵↵The presence of Rothia aeria in host-associated environments highlights the importance of understanding its ecological role, particularly in relation to the microbiome. Further investigation into its interactions and functions within the host could elucidate its potential contributions to symbiosis or competition among microbial populations. This focus on host-associated microbes underscores the complexity of microbial ecosystems and the necessity of studying their diverse roles in maintaining ecological balance." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia aeria Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living Nonsporulating 2047 NZ_LR134479.1 Bac0000880 Rothia dentocariosa "Rothia dentocariosa is a gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites, including the oral cavity, respiratory tract, and gastrointestinal tract, across multiple species. As a chemoheterotroph, R. dentocariosa relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. This microbe is a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments, which allows it to adapt to different ecological niches. The gram-positive cell wall of R. dentocariosa provides structural support and maintains its spherical shape, while its mesophilic temperature preference enables it to grow optimally at temperatures between 20-45°C. As a facultative anaerobe, R. dentocariosa can switch between aerobic and anaerobic respiration, depending on the availability of oxygen. Its presence in various body sites across multiple species highlights its ability to colonize and thrive in diverse environments. R. dentocariosa has been implicated in several human diseases, including endocarditis and septicemia, and has also been found to produce antimicrobial compounds that inhibit the growth of other bacteria, making it a subject of ongoing research in the fields of microbiology and medicine." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia dentocariosa Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living Nonsporulating 2047 NCWU00000000.1 Bac0000881 Mobiluncus curtisii "Mobiluncus curtisii is a gram-negative, curved rod-shaped bacterium that thrives in anaerobic environments, displaying a temperature preference for mesophilic conditions. As a heterotroph, it primarily derives its nutrients through the consumption of organic compounds. This microbe is commonly found in the human microbiota, particularly associated with various body sites, including the vagina, where it plays a role in the complex microbial community. The gram-negative characteristic of M. curtisii indicates that it has a thinner peptidoglycan layer surrounded by an outer membrane, which renders it less susceptible to certain antibiotics and contributes to its survival in hostile environments. Its unique curved rod shape is an adaptation that aids in motility, allowing the bacterium to navigate through viscous environments such as mucus. As a mesophilic organism, it thrives optimally at moderate temperatures, roughly between 30°C and 37°C, typical of human body temperatures.Being classified as a heterotroph, M. curtisii relies on organic compounds for energy, utilizing substances from the host's metabolic processes. Its anaerobic nature indicates that it does not require oxygen for growth, instead thriving in low-oxygen environments, such as the vaginal canal, where it may contribute to maintaining a stable microbial ecosystem.Mobiluncus curtisii has been implicated in bacterial vaginosis, a condition characterized by an imbalance in the vaginal microbiota. This bacterium's presence can indicate dysbiosis, which may lead to various health complications. Furthermore, M. curtisii demonstrates a fascinating symbiotic relationship with other microorganisms, contributing to the intricate balance of the human microbiome. Understanding this bacterium's role can shed light on broader implications for female reproductive health and its connection to systemic conditions." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii Positive Rod Anaerobe Mesophilic HostAssociated Free living 2051 UASJ00000000.1 Bac0000882 Mobiluncus mulieris "Mobiluncus mulieris is a Gram-negative, curved rod-shaped bacterium primarily found in anaerobic environments such as the uterus and the vaginal space. This species is part of the normal microbiota in the female reproductive system, contributing to the complex microbial community of the vaginal environment. Its anaerobic nature suggests that M. mulieris thrives in low-oxygen conditions, which are characteristic of the human vagina and uterus, where it may play a role in maintaining the local ecosystem's balance.↵↵The presence of M. mulieris in the vaginal environment can be influenced by various factors, including hormonal changes and the overall health of the microbiome. While its specific functions within the microbial community remain to be fully elucidated, its adaptation to anaerobic conditions indicates a potential role in the fermentation processes that occur in the vaginal microbiota. Understanding the dynamics of M. mulieris and its interactions with other microbial species may provide insights into the maintenance of vaginal health and the implications for reproductive biology. Further research is warranted to clarify its ecological role and the potential implications for female health in relation to the overall balance of the vaginal microbiome." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris negative Curved rod Yes 1 anaerobic uterus; vaginal; vaginal environment; vaginal space 2052 UASV00000000.1 Bac0000883 Tsukamurella paurometabola "Tsukamurella paurometabola is a Gram-positive, rod-shaped bacterium that typically occurs in pairs and is characterized as an obligate aerobe. As a chemoorganotroph, this microbe derives its energy from organic compounds, which it metabolizes in the presence of oxygen. T. paurometabola is predominantly found in terrestrial environments, suggesting a potential role in soil ecosystems where organic material is abundant.↵↵The obligate aerobic nature of T. paurometabola indicates its reliance on oxygen for metabolic processes, which may influence its distribution and ecological interactions in terrestrial habitats. This bacterium's ability to thrive in environments rich in organic matter may contribute to nutrient cycling and the degradation of complex organic substances, thereby playing a significant role in soil health and fertility. Understanding the metabolic capabilities and ecological niches of T. paurometabola could provide insights into its potential applications in bioremediation or soil management practices." Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella paurometabola Positive Rod No 1 1 Obligate aerobic Chemoorganotroph Mesophilic Terrestrial Free living Pairs Human 2061 NZ_LR131273.1 Bac0000884 Mycoplasmopsis arginini str. HAZ145_1 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini No 1 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating Animal; Human 2094 NZ_AP014657.1 Bac0000885 Mycoplasmopsis arginini Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini No 1 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating Animal; Human 2094 NZ_LR215045.1 Bac0000886 Mycoplasmopsis synoviae str. MS-H "Mycoplasmopsis synoviae str. MS-H is a Gram-negative coccoid bacterium that typically exists in a single-cell arrangement. This microbe exhibits a facultative anaerobic metabolism, allowing it to thrive in both the presence and absence of oxygen. M. synoviae str. MS-H is optimally adapted to a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism. ↵↵Given its structural characteristics and metabolic capabilities, M. synoviae str. MS-H may play a role in specific interactions within its host environment, potentially influencing the microbial community dynamics. The unique combination of its coccoid shape and facultative lifestyle suggests that it may have evolved to respond flexibly to varying conditions within its host, which could be pivotal for its survival and adaptation. Overall, the traits of M. synoviae str. MS-H highlight its potential significance in host-associated microbiomes and underscore the importance of understanding such microorganisms in microbial ecology." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis synoviae Negative Cocci No 1 1 Facultative 37 Mesophilic HostAssociated Free living Singles Animal 2109 NZ_KP704286.1 Bac0000887 Mycoplasmopsis agalactiae str. 5632 "Mycoplasmopsis agalactiae str. 5632 is a Gram-negative, coccoid bacterium that typically exists as single cells and is associated with host environments. This organism exhibits a facultative aerobic metabolism, allowing it to thrive in both the presence and absence of oxygen. Its unique cell arrangement as singles distinguishes it from other bacteria that may form clusters or chains.↵↵Being host-associated, Mycoplasmopsis agalactiae str. 5632 likely plays a role in the complex interactions within its host environment, potentially influencing host physiology or microbial community dynamics. The specific ecological niche it occupies may indicate a specialized adaptation to its host, which could involve intricate metabolic relationships or symbiotic interactions.↵↵Further investigation into the metabolic pathways and potential interactions of Mycoplasmopsis agalactiae str. 5632 with its host could provide valuable insights into the ecological roles of Gram-negative cocci in microbial communities. Understanding these dynamics could enhance our comprehension of microbiological ecosystems and their implications for host health and disease management." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis agalactiae Negative Cocci No 1 1 Facultative Psychrophilic HostAssociated Free living Singles 2110 NC_013948.1 Bac0000888 Mycoplasmopsis californica str. ST-6 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis californica 2113 NZ_CP007521.1 Bac0000889 Mycoplasmopsis fermentans "Mycoplasmopsis fermentans is a Gram-negative bacterium primarily found in the genitourinary tract, as well as in peripheral blood leucocytes, the throat, and urine. This microorganism is notable for its absence of a cell wall, a characteristic feature of the Mycoplasma genus, which contributes to its unique physiological properties and survival in various environments within the host. The presence of Mycoplasmopsis fermentans in the genitourinary tract may suggest a role in the complex microbial communities that inhabit this niche, potentially influencing local microbial dynamics and host interactions.↵↵The bacterium's detection in peripheral blood leucocytes indicates that it may transiently circulate in the bloodstream, which could have implications for its potential interactions with the host immune system. Additionally, its presence in the throat and urine suggests a broader distribution within the human body, raising questions about its specific ecological functions and potential interactions with other microbial species in these environments.↵↵Given the diverse habitats of Mycoplasmopsis fermentans, further investigation into its metabolic capabilities and interactions with host tissues could provide insights into its role in health and disease. Understanding these dynamics may reveal how such microorganisms contribute to the overall microbiome composition and function, potentially influencing host physiology and responses to various environmental challenges." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans Negative genitourinary tract; peripheral blood leucocytes; throat; urine Human 2115 LR214963.1 Bac0000890 Mesomycoplasma neurolyticum Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma neurolyticum 2120 NZ_LR214954.1 Bac0000891 Metamycoplasma orale "Metamycoplasma orale is a Gram-negative, pleomorphic bacterium that exhibits a nonsporulating lifestyle and is categorized as a chemoheterotroph, utilizing organic compounds for energy. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions often found in warm-blooded hosts. While specific habitats have not been delineated, the designation of ""multiple"" suggests a versatile ecological adaptability, potentially allowing it to inhabit various environments.↵↵The pleomorphic nature of Metamycoplasma orale indicates variability in cell shape and size, which may enhance its survival in fluctuating environments. As a nonsporulating organism, it relies on alternative mechanisms for persistence and propagation in its ecological niches, which could include biofilm formation or association with other microbial communities. The metabolic strategy of being a chemoheterotroph suggests that it might play a role in nutrient cycling, contributing to the degradation of organic matter and influencing the composition of microbial ecosystems.↵↵Overall, the traits of Metamycoplasma orale underscore its potential ecological significance as a flexible microbe capable of thriving in diverse environments, possibly interacting with other microorganisms and participating in complex biological processes within its habitats. Further research may elucidate its specific roles in these communities and its responses to environmental changes." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale Negative Pleomorphic No 1 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 2121 NZ_LR214942.1 Bac0000892 Spiroplasma poulsonii str. sNeo Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma poulsonii 2138 NZ_CM012290.1 Bac0000893 Spiroplasma clarkii str. CN-5 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma clarkii microaerophile 2139 NZ_CP024870.1 Bac0000894 Spiroplasma gladiatoris str. TG-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma gladiatoris microaerophile 2143 NZ_CP038013.1 Bac0000895 Mesoplasma florum Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma florum 34 2151 NZ_CP022505.1 Bac0000896 Methanobacterium bryantii str. M.o.H. Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium bryantii 2161 LMVM00000000.1 Bac0000897 Methanobrevibacter smithii str. KB11 "Methanobrevibacter smithii str. KB11 is a Gram-positive, rod-shaped archaeon that typically arranges itself in pairs or chains. This strain thrives optimally at a temperature of 37.0°C and is characterized as a lithotroph, utilizing inorganic compounds as its energy source. M. smithii str. KB11 is an anaerobic organism, indicating that it thrives in environments devoid of oxygen.↵↵This microbe is found in a diverse range of habitats, suggesting its adaptability and potential roles in various ecological niches. Its lithotrophic capabilities may allow it to participate in biogeochemical cycles, particularly in anaerobic environments where it could contribute to methane production. This characteristic is particularly relevant given the organism's potential interactions with other microbial communities, influencing nutrient cycling and energy flow within its ecosystems.↵↵The unique combination of traits exhibited by M. smithii str. KB11 highlights its significance in anaerobic digestion processes, where it may play a critical role in the degradation of organic matter and the subsequent production of methane, a key component in various energy and waste management systems. Further investigation into the ecological roles and interactions of this archaeon may yield valuable insights into its contributions to both microbial ecology and biotechnological applications." Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii Positive Rod No 1 Anaerobe 37 Lithotroph Mesophilic Multiple Free living Pairs - Chains 2173 NZ_CP017803.1 Bac0000898 Methanohalophilus halophilus str. Z-7982 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus halophilus 2177 NZ_CP017921.1 Bac0000899 Methanosarcina mazei str. JL01 "Methanosarcina mazei strain JL01 is a nonsporulating, coccoid archaeon that thrives in anaerobic environments, with an optimal growth temperature of 30.0 °C. This microorganism is classified as a lithotroph, indicating its ability to derive energy from inorganic compounds, which is characteristic of certain methanogenic archaea. Methanosarcina mazei strain JL01 is known to inhabit a variety of environments, suggesting a versatile ecological adaptability. ↵↵As a strictly anaerobic organism, it plays a crucial role in the anaerobic degradation of organic matter, contributing to methane production in various habitats, including sediments, marshes, and the gastrointestinal tracts of ruminants. The metabolic processes of Methanosarcina mazei strain JL01 are significant in biogeochemical cycles, particularly in carbon cycling and the production of biogas. ↵↵The ability of this strain to utilize diverse substrates for energy reflects its ecological importance in methanogenesis, facilitating energy flow in anaerobic ecosystems. Understanding the traits and metabolic capabilities of Methanosarcina mazei strain JL01 enhances our knowledge of microbial contributions to energy production and carbon cycling in anaerobic environments, highlighting its potential utility in biotechnological applications such as renewable energy generation from organic waste." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 NZ_CP029709.1 Bac0000900 Methanosarcina mazei "Methanosarcina mazei is a mesophilic, Gram-positive, rod-shaped archaeon that thrives in a wide range of anaerobic environments. Its metabolism is chemotrophic, utilizing hydrogen and carbon dioxide as its energy source, producing methane gas as its primary energy product. This microbe is an autotroph, meaning it produces its own organic compounds from inorganic substances, using the energy from the reaction between hydrogen and carbon dioxide. This unique metabolism allows Methanosarcina mazei to survive in environments with limited organic matter, such as soil, sediments, and the guts of animals. As a mesophilic microbe, Methanosarcina mazei prefers temperatures between 25-40°C, which is relatively mild and comparable to the normal body temperature of humans. It is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, and is often found in environments where oxygen is limited or absent, such as deep in the digestive tract or in sediments. Methanosarcina mazei is found in all body sites, including the gut, skin, and respiratory tract, of a wide range of animals, from mammals to insects. Its ability to thrive in these environments is due to its ability to tolerate and even thrive in conditions that would be lethal to most other microbes. Despite its anaerobic nature, Methanosarcina mazei is capable of producing its own energy through a process called chemosynthesis, which involves the conversion of hydrogen and carbon dioxide into methane and water. This unique energy production mechanism allows it to survive and even thrive in environments where other microbes would struggle to survive." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPI00000000.1 Bac0000901 Halobacterium salinarum str. 91-R6 "Halobacterium salinarum str. 91-R6 is a Gram-negative, rod-shaped archaeon characterized as a nonsporulating, anaerobic chemoorganotroph. This organism thrives optimally at a temperature of 50.0°C, indicating its adaptation to specialized high-temperature environments, such as saline ecosystems. ↵↵As a member of the Halobacteriaceae family, H. salinarum str. 91-R6 demonstrates unique metabolic capabilities that allow it to utilize organic compounds as energy sources in the absence of oxygen. This metabolic strategy is particularly suited for its specialized habitat, where high salinity may limit the availability of alternative energy sources.↵↵The combination of its structural characteristics, energy acquisition methods, and thermal preferences suggests that H. salinarum str. 91-R6 plays a significant role in the microbial ecology of extreme saline environments, potentially influencing nutrient cycling and contributing to the overall stability of these ecosystems. Understanding the physiological traits of this archaeon may provide insights into the adaptability and survival mechanisms of microorganisms in extreme conditions, which can inform broader studies on microbial life in similar habitats." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum Negative Rod No 1 1 Anaerobe 50 Chemoorganotroph Thermophilic Specialized Free living Nonsporulating 2242 NZ_CP038633.1 Bac0000902 Halorubrum saccharovorum Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum saccharovorum Burlinskoye Lake; Kilroot Salt Mine; saturated brine-pool; silt; water 2248 JNFH00000000.2 Bac0000903 Sulfolobus acidocaldarius "Sulfolobus acidocaldarius is a gram-negative, rod-shaped thermophilic microbe that thrives in extremely hot and acidic environments. As a chemolithoautotroph, it obtains its energy by oxidizing sulfur compounds and uses the energy produced to fix carbon dioxide through the Calvin cycle, producing glucose as its primary metabolic byproduct. This unique energy production mechanism allows it to survive in environments with temperatures ranging from 50°C to 90°C, making it an obligate thermophile. As a rod-shaped microbe, Sulfolobus acidocaldarius measures approximately 0.5-1.5 μm in length and 0.1-0.3 μm in width. It is capable of growing in a wide range of environments, from hydrothermal vents to acidic lakes and mine drainage systems. Sulfolobus acidocaldarius is a strict anaerobe, meaning it cannot survive in the presence of oxygen. In fact, it is extremely sensitive to even small amounts of oxygen and will quickly die off in environments with detectable levels of oxygen. This anaerobic lifestyle is reflected in its metabolism, which is dependent on the reduction of sulfur compounds to produce energy. Despite its obligate anaerobic nature, Sulfolobus acidocaldarius has adapted to survive in environments with varying levels of acidity. It is able to thrive in environments with pH levels as low as 1.5, making it one of the most acid-tolerant microorganisms known. In addition to its unique energy production mechanism, Sulfolobus acidocaldarius has also evolved to cope with the extreme temperatures and acidity of its environments. It produces a variety of enzymes that are resistant to denaturation at high temperatures and can function effectively in acidic environments. These enzymes play a critical role in the breakdown and synthesis of nutrients, allowing the microbe to survive and thrive in environments that would be hostile to most other organisms. One of the most striking features of Sulfolobus acidocaldarius is its ability to survive in environments that are rich in heavy metals, such as arsenic, mercury, and lead. Despite the toxic effects of these metals, the microbe has evolved mechanisms to exclude or detoxify them, allowing it to continue to thrive in environments that would be lethal to most other organisms. In summary, Sulfolobus acidocaldarius is a remarkable thermophilic microbe that has evolved to survive in some of the most extreme environments on Earth. Its unique energy production mechanism, anaerobic lifestyle, and acid tolerance make it an important model organism for studying the evolution of life in extreme environments." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius Cocci No 1 1 Aerobe 70 Lithotroph Thermophilic Specialized Free living Singles 2285 NZ_CP013695.1 Bac0000904 Saccharolobus solfataricus str. SARC-I "Saccharolobus solfataricus str. SARC-I is a Gram-negative, cocci-shaped archaeon that typically exists as single cells. This strain thrives optimally at a temperature of 85.0°C, indicating its adaptation to high-temperature environments. As a lithotroph, SARC-I utilizes inorganic compounds as its energy source, which is characteristic of certain extremophiles found in specialized habitats. Furthermore, it requires oxygen for growth, classifying it as an aerobe.↵↵The unique combination of traits exhibited by Saccharolobus solfataricus str. SARC-I suggests its potential role in biogeochemical cycling in high-temperature environments, such as hot springs or geothermal areas. Its lithotrophic metabolism may contribute to the transformation of inorganic substrates into organic compounds, influencing microbial community dynamics and nutrient availability in these extreme ecosystems. This adaptation to extreme conditions positions SARC-I as a significant player in the microbial ecology of high-temperature habitats, where it may interact with other extremophiles and contribute to the overall functioning of these unique ecosystems." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus Negative Cocci No 1 1 Aerobe 85 Lithotroph Hyperthermophilic Specialized Free living Singles 2287 NZ_CP033237.1 Bac0000905 Saccharolobus solfataricus str. SULB "Saccharolobus solfataricus str. SULB is a Gram-negative coccoid archaeon that thrives in specialized habitats, characterized by its optimal growth temperature of 85.0°C. This organism exhibits a unique cell arrangement of single cells, which distinguishes it from other microbial forms that may cluster or form chains. As a lithotroph, S. solfataricus str. SULB derives its energy from inorganic compounds, utilizing them in the presence of oxygen, which indicates its aerobic metabolic requirements.↵↵The specialized habitats in which S. solfataricus str. SULB is found are likely to be extreme environments, such as hot springs or geothermal areas, where high temperatures and the availability of inorganic substrates create a niche for this archaeon. Its ability to thrive at elevated temperatures suggests a robust enzymatic machinery that may be of interest for biotechnological applications, particularly in processes that require thermophilic organisms. ↵↵Overall, the traits of S. solfataricus str. SULB not only highlight its adaptation to extreme conditions but also underscore its potential role in biogeochemical cycles within its specialized habitat. The insights gained from studying this organism could contribute to a better understanding of microbial life in extreme environments and the evolutionary mechanisms that enable survival under such conditions." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus Negative Cocci No 1 1 Aerobe 85 Lithotroph Hyperthermophilic Specialized Free living Singles 2287 NZ_CP011055.2 Bac0000906 Saccharolobus solfataricus str. SULM "Saccharolobus solfataricus str. SULM is a Gram-negative, coccoid archaeon that thrives as a lithotrophic aerobe, with an optimal growth temperature of 85.0°C. This microorganism is characterized by its single-cell arrangement, which is typical for many archaeal species. As a lithotroph, S. solfataricus str. SULM derives energy from inorganic compounds, which is indicative of its specialized habitat that likely involves extreme environmental conditions, such as those found in hot springs or geothermal areas.↵↵The adaptation of S. solfataricus str. SULM to high temperatures is noteworthy, as it provides insight into the metabolic processes that support life in extreme environments. The ability to utilize inorganic substrates for energy while requiring oxygen suggests a unique ecological role, potentially contributing to biogeochemical cycles in its natural habitat. This archaeon exemplifies the diversity of metabolic strategies employed by extremophiles and highlights the evolutionary adaptations that enable life in harsh conditions." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus Negative Cocci No 1 1 Aerobe 85 Lithotroph Hyperthermophilic Specialized Free living Singles 2287 NZ_CP033238.1 Bac0000907 Pyrodictium occultum str. PL-19 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrodictium Pyrodictium occultum 2309 LNTB00000000.1 Bac0000908 Candidatus Sodalis pierantonii str. SOPE Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bruguierivoracaceae Sodalis Candidatus Sodalis pierantonii 2342 NZ_CP006568.1 Bac0000909 Bathymodiolus thermophilus thioautotrophic gill symbiont str. EPR9N Pseudomonadati Pseudomonadota Gammaproteobacteria Bathymodiolus thermophilus thioautotrophic gill symbiont 2360 NZ_CP024634.1 Bac0000910 Xylella fastidiosa str. CO33 "Xylella fastidiosa str. CO33 is a Gram-negative, rod-shaped bacterium that typically exists in a single-cell arrangement. This microbe thrives in host-associated habitats and exhibits an optimal growth temperature of 26.0°C, indicating a preference for moderate environmental conditions. As an aerobe, Xylella fastidiosa str. CO33 requires oxygen for its metabolic processes, which is essential for its survival and proliferation in its ecological niches.↵↵The bacterium has garnered attention due to its association with various plant hosts, where it may play a role in influencing plant health and disease dynamics. The specific interactions between Xylella fastidiosa str. CO33 and its plant hosts are an area of ongoing research, particularly in understanding its ecological implications and potential agricultural impacts.↵↵Importantly, the ability of Xylella fastidiosa str. CO33 to thrive in oxygen-rich environments may suggest adaptations that enable it to establish itself within the vascular systems of plants, where it can access nutrients while also being influenced by the host's physiological responses. This interplay highlights the complex relationships that can exist between microbial inhabitants and their host organisms, underscoring the need for further studies to elucidate the functional roles of this bacterium in its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles 2371 LJZW00000000.1 Bac0000911 Xylella fastidiosa str. Hib4 "Xylella fastidiosa str. Hib4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This strain thrives optimally at a temperature of 26.0°C, suggesting a preference for moderate thermal conditions that may reflect its adaptation to specific host environments.↵↵The habitat of Xylella fastidiosa str. Hib4 is primarily host-associated, indicating its reliance on living hosts for survival and propagation. This relationship suggests that the bacterium may be adapted to colonize specific plant tissues, although the precise nature of these associations requires further investigation to elucidate its interactions with host plants.↵↵The aerobic nature of this bacterium implies that it utilizes oxygen for its metabolic processes, which may influence its distribution and ecological role in the environments it inhabits. Understanding the environmental conditions and host interactions of Xylella fastidiosa str. Hib4 could provide insights into its ecological niche and potential impacts on plant health. Further research into its physiological traits and environmental preferences may reveal important aspects of its biology and potential management strategies in agricultural contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles 2371 NZ_CP009886.1 Bac0000912 Fervidobacterium islandicum str. AW-1 Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium islandicum anaerobic 2423 NZ_CP014334.2 Bac0000913 Gardnerella vaginalis str. KA00225 "Gardnerella vaginalis str. KA00225 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, reflecting its adaptation to a host-associated habitat. ↵↵The association of Gardnerella vaginalis with human hosts, particularly in the context of the female urogenital tract, underscores its potential role in the complex microbial communities present in this environment. While the specific ecological dynamics of strain KA00225 remain to be fully elucidated, its anaerobic metabolic requirements suggest a specialized niche within the predominantly anaerobic conditions of the vaginal microbiome. ↵↵Research has indicated that members of the Gardnerella genus are often involved in maintaining or disrupting microbial balance in their host environments. The exclusive reliance on organic substrates for energy further emphasizes the microbe’s adaptation to nutrient-rich host-associated habitats, where it may interact with a variety of other microbial species. Understanding the metabolic and ecological roles of Gardnerella vaginalis str. KA00225 can provide insights into its contributions to the health and stability of the vaginal microbiome, as well as its potential implications for female reproductive health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 MNLH00000000.1 Bac0000914 Gardnerella pickettii "Gardnerella pickettii is a Gram-positive, non-sporulating rod-shaped bacterium that primarily thrives in anaerobic environments and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. This microbe exhibits optimal growth at a temperature of 37.0 °C, which aligns with the typical human body temperature, suggesting a close association with host environments. ↵↵G. pickettii is notably found in host-associated habitats, indicating its potential role in the microbiome of various organisms, particularly humans. While the specific ecological interactions and functions of G. pickettii within these environments remain to be fully elucidated, its anaerobic nature and metabolic capabilities suggest it may contribute to the complex dynamics of microbial communities in anaerobic niches. ↵↵Understanding the biological characteristics of Gardnerella pickettii may provide insights into its role within the host's microbiota, as well as its potential interactions with other microbial species in anaerobic habitats, which could be relevant for studies focusing on human health and disease." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella pickettii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 PKJE00000000.1 Bac0000915 Gardnerella vaginalis "Gardnerella vaginalis is a gram-variable, rod-shaped bacterium that thrives in a temperature range of 25-37°C, falling under the category of mesophiles. Metabolically, it is a facultative anaerobe, meaning it can grow in the presence or absence of oxygen. It obtains energy through the fermentation of glycogen and other sugars, producing acetate and succinate as byproducts. This unique metabolism allows it to survive in a wide range of environments. Gardnerella vaginalis is a gram-variable organism, meaning it can exhibit both gram-positive and gram-negative staining properties depending on the conditions. Its rod-shaped morphology allows it to colonize the vaginal mucosa, where it can form biofilms and adhere to epithelial cells. As a facultative anaerobe, G. vaginalis can grow in the absence of oxygen, making it well-suited to thrive in the oxygen-poor environment of the vagina. However, it can also tolerate oxygen and even grows more rapidly in aerobic conditions. This ability to adapt to different oxygen levels allows it to colonize a wide range of body sites, including the vagina, cervix, and rectum. G. vaginalis has been implicated in various diseases, including bacterial vaginosis (BV), a common condition characterized by an overgrowth of anaerobic bacteria in the vagina. BV often manifests with symptoms such as itching, burning, and a strong, fishy odor. The presence of G. vaginalis in the vagina can also increase the risk of sexually transmitted infections (STIs) and premature labor in pregnant women. G. vaginalis has been identified as a pioneer species in the vaginal microbiome, playing a key role in shaping the community structure and function of this complex ecosystem. Despite its pathogenic potential, G. vaginalis is an integral part of the normal vaginal microbiota, and its presence can be beneficial in maintaining vaginal health. Further research into the ecology and behavior of G. vaginalis is crucial for developing effective treatments for BV and improving our understanding of the vaginal microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 LSLH00000000.1 Bac0000916 Gardnerella greenwoodii "Gardnerella greenwoodii is a Gram-positive, rod-shaped bacterium recognized for its anaerobic lifestyle and chemoheterotrophic metabolism. This microbe does not form spores and thrives optimally at a temperature of 37.0°C, suggesting an adaptation to host-associated environments, potentially within various mammalian hosts. The anaerobic nature of G. greenwoodii indicates that it relies on fermentation or other anaerobic metabolic pathways to derive energy from organic substrates.↵↵The habitat of Gardnerella greenwoodii within host-associated niches may play a significant role in its interactions with the host microbiome, particularly in maintaining microbial balance. Its presence could influence the overall microbial ecology by competing with other bacteria for nutrients or by contributing to metabolic processes that affect the host's health. Understanding the specific ecological roles and interactions of G. greenwoodii within its host environment could provide deeper insights into the dynamics of microbial communities and their impact on host physiology." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella greenwoodii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 PNGV00000000.1 Bac0000917 Cardiobacterium hominis "Cardiobacterium hominis is a Gram-negative, rod-shaped bacterium predominantly found in the oropharynx and upper respiratory tract of humans. As a facultative anaerobe, C. hominis has the capability to grow in both aerobic and anaerobic environments, which may contribute to its adaptability within the complex microbial communities of the human upper respiratory system. ↵↵This organism is a member of the family Cardiobacteriaceae and is known to be part of the normal flora in the human mouth and throat. Its presence in these habitats suggests a role in maintaining the microbial balance of the oral cavity, potentially contributing to competitive exclusion against pathogenic microorganisms. Given its specific localization, C. hominis may interact with other resident microbiota, influencing microbial dynamics and host interactions. ↵↵Further studies are warranted to explore the full extent of its ecological roles and interactions within the human microbiome, which may provide insights into its significance in health and disease. Understanding the functional contributions of C. hominis within its habitat may shed light on its potential impacts on respiratory health and the overall homeostasis of the upper respiratory tract microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Cardiobacterium Cardiobacterium hominis negative Rod facultative anaerobe oropharynx; upper respiratory tract 2718 FKLO00000000.1 Bac0000918 Carnobacterium divergens "Carnobacterium divergens is a Gram-positive, non-sporulating bacterium that thrives in the gut environment of various hosts. This microbe is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which is essential for its survival in diverse gut conditions. C. divergens exhibits optimal growth at 37.0°C, a temperature that aligns with the physiological conditions found in warm-blooded animals.↵↵Given its habitat in the gut, C. divergens may play a role in the microbial community, potentially influencing gut health and function. While the specific ecological interactions of C. divergens remain to be fully characterized, its presence in the gastrointestinal tract suggests it could contribute to the complex interplay of microorganisms that assist in digestion and nutrient absorption. Additionally, its facultative anaerobic nature may facilitate its adaptation to varying oxygen levels within the gut, allowing it to thrive alongside other microbial species.↵↵This adaptability, combined with its Gram-positive cell structure, positions Carnobacterium divergens as a noteworthy player in gut microbiota, highlighting the importance of understanding such bacteria in the context of gastrointestinal ecology and overall host health. Further research could elucidate its specific roles and contributions within the gut ecosystem, potentially uncovering beneficial interactions with the host or other microbial inhabitants." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium divergens positive facultative anaerobe 37 mesophilic gut Nonsporulating 2748 NZ_LT984412.1 Bac0000919 Carnobacterium maltaromaticum "Carnobacterium maltaromaticum is a nonsporulating, bacilli-shaped bacterium that typically arranges itself in chains. This microbe is classified as a facultative anaerobe, which allows it to thrive in both aerobic and anaerobic environments. Carnobacterium maltaromaticum exhibits fermentative metabolism and has the capability of degrading citrate, making it adept at utilizing a variety of organic substrates. As a chemoheterotroph, it derives its energy from organic compounds, which enables it to adapt to diverse habitats, including food products and various environments associated with food processing. This mesophilic organism thrives optimally at moderate temperatures, indicative of its evolutionary adaptability to conditions frequently found in nature and food storage. Carnobacterium maltaromaticum is often encountered in the context of food microbiology, particularly in fermented products, where it plays a role in flavor development and preservation, contributing to the safety and quality of foods like vacuum-packed meats and dairy products. An intriguing ecological insight into Carnobacterium maltaromaticum is its dual role as both a spoilage organism and a beneficial player in food preservation. While it can be associated with spoilage in certain conditions, its ability to produce bacteriocins and other antimicrobial compounds can inhibit the growth of pathogenic bacteria, highlighting its potential as a natural preservative in the food industry. This duality underscores the complexity of microbial interactions in food systems and the potential for harnessing beneficial microbes for enhanced food safety and quality." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium maltaromaticum Rod No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 2751 NZ_CP016846.1 Bac0000920 Dactylococcopsis salina PCC 8305 Bacillati Cyanobacteriota Cyanophyceae Nodosilineales Cymatolegaceae Dactylococcopsis Dactylococcopsis salina heliothermal saline pool 13035 NC_019780.1 Bac0000921 Burkholderia mallei "Burkholderia mallei is a Gram-negative, rod-shaped bacterium that is primarily associated with host organisms. This microbe is an obligate aerobe, meaning it requires oxygen for its growth and metabolism. As a member of the Burkholderia genus, B. mallei is notably adapted to a host-associated environment, which may influence its interactions with both the host and the surrounding microbial community.↵↵The habitat of B. mallei is significant as it underscores the bacterium's specialized adaptations for survival and proliferation in a host. This adaptation may facilitate its ability to exploit host resources while also navigating the complex immune responses elicited by the host organism. The pathogenic potential of B. mallei, associated with glanders disease in equines, further highlights its ecological niche and the implications of host-associated lifestyles in microbial evolution.↵↵In terms of ecological insight, B. mallei's existence as a strictly aerobic organism suggests a competitive advantage in oxygen-rich environments, enabling it to outcompete other microorganisms that may inhabit similar niches. This adaptation may influence the dynamics of microbial communities within the host, potentially affecting host health and disease outcomes. Overall, the traits of Burkholderia mallei reflect its specialized role within host ecosystems and underline the intricate relationships between pathogens and their hosts." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei Negative Rod No 1 2 Aerobe Mesophilic HostAssociated Free living 13373 RKJX00000000.1 Bac0000922 Sphingomonas paucimobilis str. EPA505 "Sphingomonas paucimobilis str. EPA505 is a rod-shaped, nonsporulating bacterium that exhibits chemoheterotrophic metabolism, relying on organic compounds for energy and carbon sources. This strain is aerobic, indicating its requirement for oxygen in the metabolic processes that sustain its growth and proliferation. Sphingomonas paucimobilis is known to inhabit diverse environments, suggesting a versatile ecological adaptability that allows it to thrive in multiple habitats.↵↵The ability of Sphingomonas paucimobilis str. EPA505 to utilize a range of organic substrates may contribute to its ecological role in nutrient cycling and organic matter decomposition in various ecosystems. This trait positions the strain as a potential participant in bioremediation processes, where bacteria can degrade environmental pollutants. Thus, understanding the metabolic capabilities of S. paucimobilis str. EPA505 may provide insights into its functions within microbial communities and its potential applications in environmental biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas paucimobilis Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 13689 JFYY00000000.1 Bac0000923 Sphingobium yanoikuyae str. SHJ Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium yanoikuyae 13690 NZ_CP020927.1 Bac0000924 Sphingobium yanoikuyae str. Sphingobium yanoikuyae SJTF8 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium yanoikuyae 13690 NZ_CP033230.1 Bac0000925 Sphingobium yanoikuyae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium yanoikuyae 13690 QRAL00000000.1 Bac0000926 Sphingobium yanoikuyae str. B1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium yanoikuyae 13690 JGVR00000000.1 Bac0000927 Pyrobaculum aerophilum str. YKB31 "Pyrobaculum aerophilum str. YKB31 is a rod-shaped microorganism that thrives in aquatic environments, exhibiting both aerobic and anaerobic metabolic capabilities. This extremophilic archaeon is optimally adapted to high-temperature conditions, with a growth temperature peaking at 100.0 °C. Its dual oxygen requirement suggests a versatile metabolic strategy, allowing it to survive in varied redox environments typical of geothermal aquatic habitats.↵↵The ability of P. aerophilum str. YKB31 to grow in the absence of oxygen is particularly noteworthy, as it enables the organism to exploit a wide range of ecological niches, potentially including anoxic layers in thermal springs or hydrothermal vents. This adaptability not only highlights the organism's resilience but also suggests its potential role in biogeochemical cycling in extreme environments. The unique combination of high-temperature tolerance and flexible oxygen utilization positions P. aerophilum str. YKB31 as a significant player in the microbial communities of thermophilic aquatic ecosystems. Understanding its metabolic pathways and ecological interactions could provide insights into microbial life in extreme conditions and the evolutionary adaptations required for survival in such habitats." Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum NA Rod No 1 1 Aerobe; anaerobe 100 Hyperthermophilic Aquatic 13773 NMUE00000000.1 Bac0000928 Bifidobacterium pseudocatenulatum "Bifidobacterium pseudocatenulatum is a gram-positive, rod-shaped bacterium that thrives in a thermophilic environment, characterized as mesophilic, with a temperature preference range of 25-45°C. As a heterotroph, it obtains its energy by breaking down complex organic molecules, specifically by fermenting carbohydrates and peptides. This microbe produces ATP through anaerobic fermentation of glucose, yielding lactate, acetate, and formate as byproducts. Bifidobacterium pseudocatenulatum is a ubiquitous microbe, colonizing various body sites, including the oral cavity, gut, vagina, and skin, in all species of mammals. It is an obligate anaerobe, unable to survive in the presence of oxygen, which necessitates the development of specialized membrane-bound enzymes to facilitate anaerobic metabolism. One of the distinctive features of Bifidobacterium pseudocatenulatum is its ability to produce various bioactive compounds, including conjugated linoleic acid, which exhibits immunomodulatory effects. Additionally, it has been associated with the production of antimicrobial peptides, contributing to its ability to inhibit the growth of pathogenic bacteria. In the context of human health, Bifidobacterium pseudocatenulatum is considered a beneficial microbe, playing a crucial role in maintaining gut homeostasis and immune system development. Furthermore, it has been linked to the alleviation of symptoms in patients suffering from irritable bowel syndrome (IBS), inflammatory bowel disease (IBD), and other gastrointestinal disorders." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum Positive Anaerobe gastrointestinal tracts of adults and breastfed infants; gut; gut microbiomes; infant gut; infant gut microbiota; Vietnamese gut microbiota 28026 CYZC00000000.1 Bac0000929 Lysinibacillus fusiformis str. Juneja "Lysinibacillus fusiformis strain Juneja is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, enabling it to withstand adverse environmental conditions. This microbe functions as a chemoheterotroph, deriving its energy from organic compounds, which highlights its adaptability to various nutrient sources. ↵↵Lysinibacillus fusiformis str. Juneja has been isolated from multiple habitats, indicating its potential versatility and ecological resilience. The presence of spores in its lifecycle suggests that it may play a role in soil health and nutrient cycling, as spores can survive in harsh environments and germinate when conditions become favorable. ↵↵This bacterium's ability to thrive in diverse environments while utilizing organic substrates points towards its potential involvement in decomposition processes and interactions with other microorganisms in its ecosystem. The study of Lysinibacillus fusiformis str. Juneja can provide insights into microbial community dynamics and the roles that sporulating bacteria play in maintaining ecological balance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus fusiformis Positive Rod No 1 Chemoheterotroph Multiple Sporulating 28031 NZ_CM009107.1 Bac0000930 Sulfobacillus thermosulfidooxidans Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Sulfobacillus Sulfobacillus thermosulfidooxidans thermophilic 28034 PXYU00000000.1 Bac0000931 Staphylococcus lugdunensis str. MJR7738 "Staphylococcus lugdunensis str. MJR7738 is a Gram-positive bacterium characterized by its cocci shape and diverse cell arrangements, including chains, clusters, pairs, and singles. This strain is associated with host environments, indicating a close relationship with living organisms, and exhibits both aerobic and anaerobic respiration capabilities, allowing it to thrive in varying oxygen conditions. ↵↵The ability to grow in both oxygen-rich and low-oxygen environments suggests that S. lugdunensis str. MJR7738 may occupy niches within host tissues that experience fluctuating oxygen levels, such as during inflammation or in anaerobic microenvironments. This versatility in oxygen metabolism may contribute to its ecological success in host-associated habitats, potentially influencing its interaction with the host's immune system and overall microbial community dynamics." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus lugdunensis Positive Cocci No 1 1 Aerobe; anaerobe Mesophilic HostAssociated Free living Chains - Clusters - Pairs - Singles 28035 LRQI00000000.1 Bac0000932 Streptococcus mitis "Streptococcus mitis is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, is a chemoheterotroph, and can be found in all body sites in various species, including the oral cavity, respiratory tract, and gastrointestinal tract, and is a facultative anaerobe. As a Gram-positive microbe, Streptococcus mitis has a thick peptidoglycan layer in its cell wall, which provides it with a robust structure and allows it to retain the crystal violet stain during the Gram staining procedure, appearing purple under a microscope. Its spherical shape, also known as cocci, enables it to withstand various environmental pressures and interact with host cells. The mesophilic temperature preference of Streptococcus mitis indicates that it grows best in moderate temperatures, typically between 20-45°C, which is similar to the human body temperature. As a chemoheterotroph, Streptococcus mitis relies on external sources of energy and organic compounds to sustain its metabolic processes, which is why it can be found in various body sites where nutrients are abundant. Its ability to thrive in different environments, from the oral cavity to the gastrointestinal tract, makes it a versatile microbe. Being a facultative anaerobe, Streptococcus mitis can grow in the presence or absence of oxygen, allowing it to adapt to different conditions. In its natural habitat, Streptococcus mitis plays a crucial role in the oral microbiome, where it helps to break down complex carbohydrates and produce antimicrobial compounds that inhibit the growth of other microbes. Notably, Streptococcus mitis has been implicated in the development of endocarditis, a serious infection of the heart valves, particularly in individuals with pre-existing heart conditions, highlighting the importance of this microbe in human health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JYGQ00000000.1 Bac0000933 Streptococcus mitis str. 10712 "Streptococcus mitis str. 10712 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. As a nonsporulating microbe, it thrives in host-associated habitats, indicating a close relationship with its host organisms. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels within its environment. ↵↵S. mitis is commonly found in the oral cavity and is part of the normal flora in humans, suggesting its potential role in maintaining host health. The ability of S. mitis str. 10712 to survive in both aerobic and anaerobic conditions may provide insights into its metabolic flexibility and ecological adaptability within the complex microbial communities of the host. Understanding the specific interactions of this strain with its host could shed light on its contributions to oral health and its potential implications in microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 LROT00000000.1 Bac0000934 Streptococcus mitis str. SK1126 "Streptococcus mitis str. SK1126 is a Gram-positive bacterium characterized by its coccoid shape and tendency to form chains or pairs. As a nonsporulating organism, it relies on other survival mechanisms in its host-associated habitat. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments, which is a notable trait for bacteria inhabiting diverse ecological niches within host organisms.↵↵Streptococcus mitis is part of the normal microbiota in the human oral cavity and respiratory tract, where it plays a role in maintaining microbial balance. While specific pathogenicity details of strain SK1126 are not provided, members of the Streptococcus mitis group are generally recognized for their potential to contribute to opportunistic infections, particularly in immunocompromised individuals.↵↵The ecological role of Streptococcus mitis str. SK1126 may extend beyond mere colonization; it could also be involved in biofilm formation on mucosal surfaces, which is critical for its persistence and interaction with other microbial species. Understanding the traits of this strain enhances our appreciation of its potential implications in health and disease, especially in the context of microbial community dynamics within host environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JPFT00000000.1 Bac0000935 Streptococcus mitis str. SK271 "Streptococcus mitis strain SK271 is a Gram-positive cocci bacterium that typically arranges itself in chains or pairs. As a nonsporulating organism, it does not form spores, which is a characteristic feature of certain bacterial taxa. S. mitis SK271 is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may enhance its adaptability within host-associated habitats.↵↵This strain is part of the diverse genus Streptococcus, which is known for its presence in various ecological niches, particularly in the human oral cavity and respiratory tract. The ability to form chains and pairs can be significant in its interaction with host tissues and other microbial communities, potentially influencing its role in oral and systemic microbiomes.↵↵Understanding the growth conditions and environmental preferences of S. mitis SK271 provides insight into its ecological role. As a facultative anaerobe, it may contribute to the dynamic balance of microbial populations within host-associated environments, particularly in situations where oxygen levels fluctuate. This adaptability can allow S. mitis SK271 to occupy ecological niches that may be less accessible to strictly aerobic or anaerobic microorganisms, thereby playing a crucial role in host-associated microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JPGW00000000.1 Bac0000936 Streptococcus mitis str. SK578 "Streptococcus mitis strain SK578 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain is nonsporulating and demonstrates facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. mitis SK578 is likely to reside within the human microbiota, particularly in the oral cavity, where it can coexist with various other microbial species. ↵↵The facultative anaerobic nature of this strain suggests its adaptability to fluctuating oxygen levels, which is a common characteristic of many oral streptococci. This adaptability may play a crucial role in its survival and function within the complex oral ecosystem, where it can contribute to the maintenance of microbial balance and potentially influence host health. ↵↵Given its chain and pair arrangement, S. mitis SK578 may have implications for biofilm formation, a common trait among oral streptococci. Biofilms are critical for the colonization of surfaces in the oral cavity, which can affect overall oral health and the dynamics of microbial interactions. Therefore, studying this strain can provide valuable insights into the role of Streptococcus mitis in the oral microbiome and its potential contributions to both health and disease in human hosts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JPFY00000000.1 Bac0000937 Streptococcus mitis str. SK629 "Streptococcus mitis str. SK629 is a Gram-positive coccus that typically forms chains or pairs, reflecting its characteristic arrangement. As a nonsporulating bacterium, it relies on its ability to thrive in host-associated environments, suggesting a close relationship with its biological hosts. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen conditions, which is beneficial for survival in diverse microenvironments within the host. ↵↵Streptococcus mitis is generally regarded as a commensal organism, often found in the oral cavity and respiratory tract of humans and other mammals. Its presence in these habitats may play a role in maintaining the balance of the microbiota, potentially influencing host health by competing with pathogenic microorganisms. Understanding the metabolic flexibility and ecological interactions of S. mitis str. SK629 can provide insights into its role in microbial communities, as well as its potential contributions to host-associated processes such as immune modulation or nutrient cycling. Further research could explore the specific functions and interactions of this strain within the complex ecosystem of the host microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JPFU00000000.1 Bac0000938 Streptococcus mitis str. SK642 "Streptococcus mitis strain SK642 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. mitis SK642 is often found in the human oral cavity and may play a role in the complex microbial communities that inhabit this niche.↵↵The coccoid shape and chain-pair arrangement of S. mitis SK642 are characteristic of the genus Streptococcus, which includes many species known for their diverse interactions with human hosts. The facultative anaerobic nature of this strain suggests it can adapt to varying oxygen levels, which may enhance its survivability in the dynamic environments of the oral microbiome. ↵↵Understanding the traits of S. mitis SK642 contributes to our broader knowledge of oral microbiota, particularly regarding its potential interactions with other microorganisms and its role in maintaining microbial balance. This strain’s presence in host-associated habitats highlights the importance of Streptococcus species in human health, where they may influence both commensal and pathogenic dynamics within the oral ecosystem." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JPFW00000000.1 Bac0000939 Streptococcus mitis str. SK667 "Streptococcus mitis strain SK667 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains or pairs. As a nonsporulating organism, it thrives in host-associated environments and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels associated with different host tissues. ↵↵This strain is part of the larger Streptococcus mitis group, which is commonly found in the human oral cavity and upper respiratory tract, suggesting its potential role in the complex microbiota of these regions. The facultative anaerobic nature of S. mitis SK667 may enable it to coexist with other microbial populations in the dynamic environment of the host, utilizing available oxygen when present or fermentative pathways under anaerobic conditions.↵↵Understanding the specific ecological niche occupied by S. mitis SK667 can provide insights into its interactions with both the host and other microbial inhabitants. Its ability to form chains or pairs may facilitate colonization and biofilm formation, which are critical for maintaining its presence in the host-associated habitat. This trait could also suggest a potential role in microbial community dynamics, where cooperation and competition with other species may influence overall health and disease states in the host." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JPFV00000000.1 Bac0000940 Latilactobacillus curvatus str. NFH-Km12 "Latilactobacillus curvatus strain NFH-Km12 is a Gram-positive, rod-shaped bacterium recognized for its versatility in various fermentation environments, including pickled vegetables, fermented dairy products, and meat. This strain is typically found in substrates such as carrots and radishes pickled with rice bran and salt, as well as in kimchi and other fermented plant products. As a facultative anaerobe, L. curvatus NFH-Km12 can thrive in both aerobic and anaerobic conditions, which allows it to adapt to the diverse environments it inhabits.↵↵The presence of L. curvatus in fermented food products suggests a role in the fermentation process, potentially contributing to flavor development and preservation through the production of lactic acid and other metabolites. Its ability to inhabit both plant and dairy matrices indicates a metabolic flexibility that may enhance its ecological success in varied fermentation systems.↵↵Moreover, the recovery of this strain from a range of fermented foods highlights its potential as a beneficial microbe in food biotechnology, where it could be utilized for the enhancement of flavor and texture in fermented products. Understanding the specific metabolic pathways employed by L. curvatus NFH-Km12 in these diverse habitats could provide insights into its functional contributions to food fermentation and preservation techniques." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 AP018702.1 Bac0000941 Latilactobacillus curvatus str. TMW 1.1928 "Latilactobacillus curvatus strain TMW 1.1928 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This microbe is commonly found in various fermented environments, including pickled carrots with rice bran and salt, fermented dairy products, kimchi, meat, and other plant-based fermented products, such as radish pickled with rice bran and salt.↵↵The presence of Latilactobacillus curvatus in these diverse habitats suggests its adaptability and potential role in fermentation processes, where it may contribute to the flavor profile and preservation of food products. Its facultative anaerobic nature allows it to thrive in both aerobic and anaerobic conditions, enhancing its versatility in different fermentation environments. The bacterium's ability to inhabit a range of substrates indicates a capacity for utilizing various carbohydrates, which may be linked to its role in food fermentation.↵↵Given its association with traditional fermentation practices, Latilactobacillus curvatus strain TMW 1.1928 may also offer insights into the development of functional foods and probiotics. Its presence in fermented vegetables and dairy highlights its potential contribution to the nutritional and sensory qualities of these products, suggesting a beneficial role in human diets. Further exploration of this strain could provide valuable information on the microbiological dynamics of fermented foods and their impact on health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 NZ_CP031008.1 Bac0000942 Latilactobacillus curvatus "Latilactobacillus curvatus is a Gram-positive, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This microbe is commonly found in a variety of fermented environments, including pickled vegetables such as carrots and radishes, as well as in fermented dairy products, kimchi, and various meat and plant products. ↵↵Latilactobacillus curvatus's ability to thrive in diverse, oxygen-variable habitats suggests a metabolic versatility that may contribute to its functional roles in fermentation processes. In particular, its presence in pickled products, which often utilize rice bran and salt, indicates a potential for contributing to the preservation and flavor development in these foods. The bacterium's fermentation capabilities could also influence the nutritional profiles of the substrates it inhabits, possibly enhancing the bioavailability of certain nutrients.↵↵Overall, the ecological role of Latilactobacillus curvatus in fermented food systems reflects its adaptability and potential contributions to food preservation and flavor enhancement, underscoring its importance in traditional fermentation practices. Its presence in a variety of substrates highlights the interconnectedness of microbial communities within diverse food matrices, impacting both food safety and culinary traditions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 SUMW00000000.1 Bac0000943 Latilactobacillus curvatus str. NRIC0822 "Latilactobacillus curvatus str. NRIC0822 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This microbe is commonly found in various fermented environments, including pickled carrots and radishes prepared with rice bran and salt, as well as in fermented dairy products, kimchi, and other fermented plant and meat products. The ability to thrive in diverse fermentation substrates suggests a versatile metabolic capacity, allowing it to adapt to different anaerobic and microaerophilic conditions. ↵↵Latilactobacillus curvatus str. NRIC0822 may play a significant role in the fermentation processes of these foods, contributing to the development of their unique flavors and textures. The presence of this bacterium in traditional fermented foods indicates its potential importance in food preservation and safety, as well as its contribution to the sensory characteristics of these products. Furthermore, the association with a variety of plant-based substrates highlights its possible use in symbiotic fermentation systems, where it could interact beneficially with other microbial species. This adaptability reinforces its ecological significance within the microbiota of fermented foods, providing insights into the complex interactions that occur during the fermentation process." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 JTJV00000000.1 Bac0000944 Latilactobacillus curvatus str. SRCM103465 "Latilactobacillus curvatus strain SRCM103465 is a Gram-positive, rod-shaped bacterium classified within a group of lactic acid bacteria. This microbe is notable for its versatile habitat, thriving in diverse fermented environments, including pickled carrots and radishes prepared with rice bran and salt, as well as various fermented dairy products, kimchi, and certain meat and plant products. As a facultative anaerobe, L. curvatus can grow in both the presence and absence of oxygen, enabling it to adapt to the fluctuating conditions often encountered in fermentation processes.↵↵The metabolic capabilities of L. curvatus str. SRCM103465, particularly in the context of food fermentation, suggest its potential role in enhancing the flavor and preservation of various food products. By producing lactic acid and other metabolites during fermentation, this strain may contribute to the development of unique sensory attributes while simultaneously inhibiting the growth of spoilage organisms. The ability to inhabit a wide array of substrates reflects its ecological versatility and may be indicative of its importance in traditional fermentation practices across different cultures. This adaptability underscores the potential of L. curvatus as a valuable organism in food biotechnology, particularly in the fermentation and preservation of vegetables and dairy products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 NZ_CP035110.1 Bac0000945 Latilactobacillus curvatus str. WiKim52 "Latilactobacillus curvatus strain WiKim52 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This strain has been identified in a variety of habitats, including carrots pickled with rice bran and salt, fermented dairy products, kimchi, meat, and various plant products such as radish pickled with rice bran and salt. The ability of L. curvatus WiKim52 to thrive in diverse environments underscores its versatility as a fermentative organism, capable of contributing to the flavor and preservation of various foods.↵↵The facultative anaerobic nature of this strain suggests that it can metabolize in both the presence and absence of oxygen, which may enhance its survival and proliferation in different fermentation conditions. This adaptability is particularly significant for its role in traditional fermentation processes, where varying oxygen levels can influence microbial communities and the final characteristics of fermented foods.↵↵Additionally, the presence of L. curvatus WiKim52 in fermented products indicates its potential involvement in the development of unique flavors and preservation qualities, making it a valuable organism in food science and microbiology. Understanding the ecological roles and metabolic capabilities of this strain can provide insights into its applications in food fermentation and the enhancement of food safety and quality." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 NZ_CP016602.1 Bac0000946 Saccharopolyspora rectivirgula str. DSM 43113 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora rectivirgula 45 thermophilic 28042 JNVU00000000.1 Bac0000947 Lachnospira pectinoschiza "Lachnospira pectinoschiza is a Gram-positive, nonsporulating bacterium primarily recognized for its pectin-degrading capabilities and classification as a chemoheterotroph. This microbe is a member of the human intestinal microflora, contributing significantly to the complex ecosystem of the gut. It thrives in anaerobic conditions, where it plays a vital role in the fermentation processes that help break down dietary fibers, particularly pectin—a polysaccharide abundant in fruits and vegetables. In the gut environment, Lachnospira pectinoschiza interacts with various other microorganisms, facilitating the degradation of complex carbohydrates and producing short-chain fatty acids (SCFAs), which are crucial for gut health. These SCFAs, including acetate and butyrate, serve as energy sources for colonocytes and have anti-inflammatory properties, aiding in the maintenance of intestinal homeostasis. Understanding the metabolic roles of Lachnospira pectinoschiza not only highlights its importance in digestion and nutrient absorption but also suggests potential applications in nutrition and medicine. For instance, enhancing the abundance of this microbe through dietary adjustments or probiotics may improve gut health, reduce inflammation, and even influence metabolic disorders. The study of Lachnospira pectinoschiza demonstrates the intricate relationships within the gut microbiome and underscores the significance of specific microbes in maintaining overall health and preventing disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira pectinoschiza Positive No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 28052 FNHZ00000000.1 Bac0000948 Rhodoferax fermentans str. JCM 7819 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax fermentans anaerobic 28066 MTJN00000000.1 Bac0000949 Nostoc sp. PCC 7524 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. PCC 7524 Fresh water 28072 NC_019684.1 Bac0000950 Legionella birminghamensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella birminghamensis 28083 UGNW00000000.1 Bac0000951 Legionella cherrii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella cherrii microaerophile 28084 LNXW00000000.1 Bac0000952 Legionella sainthelensi "Legionella sainthelensi is a Gram-negative bacterium primarily found in freshwater environments. This species belongs to the genus Legionella, which is recognized for its association with aquatic habitats. As a member of this genus, L. sainthelensi shares morphological characteristics typical of Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides.↵↵The natural habitat of L. sainthelensi in freshwater suggests its potential role in aquatic ecosystems, where it may interact with various microbial communities and contribute to the nutrient cycling processes within these environments. The presence of Legionella species in freshwater systems is of particular interest, as they can inhabit a range of aquatic niches, from rivers and lakes to man-made water systems.↵↵Research on Legionella species often emphasizes their ability to thrive in specific environmental conditions, highlighting the adaptability of L. sainthelensi to freshwater habitats. Further exploration of its ecological niche might reveal insights into its interactions with other microorganisms and the environmental factors that influence its distribution and abundance. Understanding these dynamics could provide a more comprehensive view of its role in freshwater ecosystems and its potential implications for water quality and microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella sainthelensi negative Fresh water 28087 NZ_LR134178.1 Bac0000953 Legionella sainthelensi str. LA01-117 "Legionella sainthelensi strain LA01-117 is a Gram-negative bacterium primarily found in freshwater environments. This strain belongs to the genus Legionella, which is known for its association with aquatic habitats, including lakes, rivers, and man-made water systems. The Gram-negative nature of L. sainthelensi LA01-117 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that influences its interaction with the environment and response to antimicrobial agents.↵↵As a member of the Legionella genus, L. sainthelensi LA01-117 likely shares metabolic traits that enable it to thrive in aquatic systems, where it may utilize organic compounds as carbon sources, although specific metabolic pathways for this strain were not provided. The bacterium's presence in freshwater habitats suggests an ecological role that may involve interactions with other microorganisms, possibly contributing to nutrient cycling within these ecosystems.↵↵Given the environmental context, L. sainthelensi LA01-117 may participate in biofilm formation on surfaces submerged in freshwater, which can provide a protective niche and promote communal living among diverse microbial populations. This characteristic further underscores the importance of studying Legionella species in their natural habitats to understand their ecological functions and potential impacts on water quality and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella sainthelensi negative Fresh water 28087 NZ_CP025492.2 Bac0000954 Acinetobacter lwoffii "Acinetobacter lwoffii is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range (optimally at 30-37°C). As a chemoheterotroph, it derives its energy from organic compounds while utilizing oxygen in a facultative anaerobic manner, which allows it to adapt to varying oxygen levels. This bacterium is commonly found in numerous body sites across different species, including humans, where it can inhabit the skin, respiratory tract, and gastrointestinal tract. The Gram-negative nature of Acinetobacter lwoffii is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that play a critical role in its pathogenicity and resistance to antibiotics. The rod shape provides the bacterium with a structural advantage, facilitating its motility and colonization in various environments. This microbe is notably part of the normal flora in humans and is frequently associated with nosocomial infections, particularly in immunocompromised patients. As a facultative anaerobe, Acinetobacter lwoffii can survive in both oxygen-rich and oxygen-poor environments, allowing it to adapt to its host's changing conditions. This versatility enhances its potential to thrive in diverse ecological niches, including environmental sources such as soil and water. Moreover, it exhibits a remarkable ability to acquire antibiotic resistance, making it a serious concern in clinical settings.In addition to its role in human health and disease, Acinetobacter lwoffii is also utilized in bioremediation, demonstrating its capacity to degrade environmental pollutants, thus highlighting its ecological significance beyond its pathogenic potential. Furthermore, ongoing research is investigating its interactions within the human microbiome and potential applications in biotechnology, revealing its multifaceted role in health and environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Rod Yes Aerobe oropharynx; skin 28090 NZ_CP078049.1 Bac0000955 Trinickia caryophylli Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia caryophylli 28094 FXAH00000000.1 Bac0000956 Agrobacterium rubi Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium rubi 28099 LXKU00000000.1 Bac0000957 Phyllobacterium myrsinacearum str. DSM 5892 "Phyllobacterium myrsinacearum strain DSM 5892 is a Gram-negative, rod-shaped bacterium that requires aerobic conditions for growth. This microbe is a member of the Phyllobacterium genus, which is characterized by its distinct morphological and physiological traits. As an aerobic organism, P. myrsinacearum is adapted to environments where oxygen is readily available, which may influence its ecological niches and interactions with other microorganisms.↵↵The Gram-negative nature of P. myrsinacearum suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural characteristic typically confers a degree of resilience against certain environmental stresses and may impact its interactions with other microbial species or host organisms.↵↵While specific ecological roles and interactions have not been detailed, the aerobic metabolism of P. myrsinacearum implies a potential involvement in biogeochemical cycles, particularly those related to nitrogen or carbon cycling, depending on its substrate utilization capabilities. Further studies could elucidate its specific contributions to ecosystems, particularly in relation to its interactions with plant species, as indicated by the genus name, which is often associated with plants. Understanding the ecological significance of P. myrsinacearum could provide insights into the roles of aerobic bacteria in nutrient cycling and plant-microbe interactions within various habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium myrsinacearum Gram-negative rod aerobic 28101 PVBT00000000.1 Bac0000958 Alteromonas macleodii str. Te101 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas macleodii Yes "Atlantic; coastal bloom; coastal waters; copper test materials for marine ships; copper-based antifouling paint; Equatorial Pacific; equatorial Pacific Ocean; Marine; ocean; open ocean; Pacific Ocean; south, equatorial and north Pacific Ocean" T. pseudonana 28108 NZ_CP018322.1 Bac0000959 Francisella philomiragia str. FAJ Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia 28110 JOUE00000000.1 Bac0000960 Francisella philomiragia str. GA01-2801 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia 28110 NZ_CP009445.1 Bac0000961 Bacteroides eggerthii "Bacteroides eggerthii is an obligate anaerobic, Gram-negative bacterium that falls under the Chemoheterotroph category, deriving its energy from organic compounds. It typically appears as a rod-shaped organism and is part of the diverse microbiota found in the human gut, present in various body sites including the oral cavity, gastrointestinal tract, and sometimes in the respiratory and urogenital tracts. As an obligate anaerobe, Bacteroides eggerthii thrives in environments devoid of oxygen, making it well-suited to the anaerobic conditions of the intestines where it plays a crucial role in digestion. Being a chemoheterotroph, this microbe relies on organic substrates for both carbon and energy, contributing significantly to the breakdown of complex carbohydrates and proteins. Its metabolic activities not only assist in nutrient absorption for the host but also result in the production of short-chain fatty acids, which are vital for gut health and can influence systemic inflammation. The Gram-negative nature of Bacteroides eggerthii signifies that it possesses a thin peptidoglycan layer surrounded by an outer membrane, contributing to its resilience against certain antibiotics. The rod shape of this bacterium allows it to efficiently colonize various niches within the gut environment, where it can form biofilms and interact with other microbial species. Bacteroides eggerthii also plays a significant role in the human microbiome, where it can contribute to immune modulation and the maintenance of gut homeostasis. Disturbances in its population can be linked to conditions such as inflammatory bowel disease and other gut-related disorders. Additionally, its ability to metabolize a wide range of substrates underscores its adaptability and importance in maintaining a balanced gut microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides eggerthii Negative Anaerobe human gut microbiota 28111 QSLA00000000.1 Bac0000962 Tannerella forsythia "Tannerella forsythia is a gram-negative, rod-shaped bacterium that thrives in anaerobic environments, making it an obligate anaerobe. This microorganism is classified as a chemoheterotroph, deriving energy from organic compounds while also relying on other organisms for carbon. T. forsythia is predominantly found in the human oral cavity, particularly within subgingival plaque, but it can also inhabit other body sites such as the gastrointestinal tract and respiratory tract. As a gram-negative bacterium, T. forsythia possesses a thin peptidoglycan layer surrounded by an outer membrane, which includes lipopolysaccharides. This structural characteristic contributes to its pathogenicity, as it can evade the host's immune system and persist in anaerobic conditions common in periodontal pockets. The rod-shaped morphology aids in its motility and ability to colonize dental surfaces, contributing to its role in oral biofilm formation. T. forsythia prefers warm temperatures typical of the human body, which enhances its growth and virulence. Its classification as a chemoheterotroph indicates that it utilizes organic compounds, primarily derived from the host's tissues and other bacteria, as fuel for its metabolic processes. This metabolic strategy enables T. forsythia to thrive in the nutrient-rich environment of the oral cavity. This microorganism has garnered significant attention in periodontal research due to its association with periodontitis, a serious gum disease characterized by inflammation and destruction of the supporting structures of teeth. Studies have shown that T. forsythia often coexists with other periodontal pathogens, contributing to the complexity of oral microbiota and the pathogenesis of periodontal diseases. Its ability to produce virulence factors, such as proteolytic enzymes, further complicates treatment strategies for oral infections." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella forsythia Negative Anaerobe gingival sulci; subgingival and supragingival dental biofilms; subgingival plaque 28112 RQYS00000000.1 Bac0000963 Prevotella heparinolytica "Prevotella heparinolytica is a Gram-negative, anaerobic bacterium commonly found in various human habitats, including the intestinal tract, oral cavity, and urinary tracts. As a member of the Prevotella genus, this microbe thrives in oxygen-deprived environments, which is characteristic of its ecological niches. The presence of P. heparinolytica in the intestinal and oral microbiomes suggests its potential role in the complex microbial communities that contribute to human health and disease.↵↵Prevotella species are known for their ability to metabolize a variety of substrates, including carbohydrates and proteins, which may facilitate their adaptability in different environments within the human body. The detection of P. heparinolytica in the oral cavity raises intriguing questions about its interactions with other microbial species and its potential influence on oral health. Given its presence in both the intestinal and urinary tracts, this microbe may also participate in the intricate microbial dynamics that govern these environments.↵↵Understanding the ecological role of P. heparinolytica may provide insights into its contributions to host metabolism and its potential implications for health. Further research could elucidate its interactions with other members of the microbiota and its overall impact on the maintenance of microbial balance in the host. The study of this bacterium highlights the complexity of anaerobic environments and the importance of understudied microbes in the broader context of human microbiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Prevotella heparinolytica negative anaerobic intestinal; oral; oral cavity; urinary tracts 28113 NZ_CP027234.1 Bac0000964 Porphyromonas macacae Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas macacae gingival crevicular fluid; oral cavity; subgingival plaque 28115 UGTI00000000.1 Bac0000965 Bacteroides ovatus "Bacteroides ovatus is a Gram-negative, rod-shaped bacterium classified as an obligate anaerobe and a chemoheterotroph, thriving in the human gut and other anaerobic environments. This microbe prefers a temperature range typical of the human body (approximately 37°C), allowing it to effectively colonize the intestines. As a chemoheterotroph, Bacteroides ovatus derives its energy from organic compounds, breaking down complex carbohydrates and polysaccharides into simpler forms that can be utilized for energy production. This metabolic process is crucial for maintaining gut health, as it contributes to the fermentation of dietary fibers, producing short-chain fatty acids that serve as an energy source for colon cells. Bacteroides ovatus is primarily located in the human gastrointestinal tract, specifically within the large intestine, where it plays a vital role in the digestion of complex carbohydrates that are otherwise indigestible by human enzymes. By aiding in the breakdown of these substrates, it not only helps in nutrient absorption but also in the maintenance of gut flora balance. This bacterium is of particular interest in the field of microbiome research due to its role in maintaining gut health and its potential implications in various diseases. Studies have suggested that an imbalance in Bacteroides populations may be linked to conditions such as obesity, inflammatory bowel disease, and diabetes. Furthermore, Bacteroides ovatus has been explored for its ability to produce enzymes that can degrade plant polysaccharides, highlighting its potential in biotechnology applications, such as biofuel production. Its unique metabolic pathways and interactions within the gut ecosystem continue to be a focus of scientific investigation, as understanding these dynamics could lead to novel therapeutic strategies." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 QSBI00000000.1 Bac0000966 Butyrivibrio sp. Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. rumen 28121 DNFO00000000.1 Bac0000967 Prevotella disiens "Prevotella disiens is a gram-negative, rod-shaped microbe that thrives in a broad temperature range, characterized as mesophilic with optimal growth between 25-37°C. As a chemoheterotroph, P. disiens obtains its energy by oxidizing organic compounds, utilizing them as both carbon and energy sources. This process is facilitated through respiratory chain reactions, where the microbe produces ATP from the conversion of glucose and other organic compounds. P. disiens is widely distributed across various body sites, including the oral cavity, gastrointestinal tract, and female genital tract, in diverse species. Its presence is often associated with the human microbiome, playing a role in shaping the immune system and influencing local metabolic processes. As an obligate anaerobe, P. disiens is unable to grow in the presence of oxygen and requires a low-oxygen or anaerobic environment to survive. This is due to the fact that P. disiens lacks the necessary enzymes to handle oxygen, which would otherwise damage the microbe's cell membrane. P. disiens has been implicated in several human diseases, including periodontitis, chronic gingivitis, and pelvic inflammatory disease. However, it is also known to contribute to the breakdown and recycling of organic matter, playing a crucial role in the ecosystem balance. In terms of its genome, P. disiens has been found to possess genes involved in the transportation of sugars and amino acids, as well as the production of enzymes for protein degradation. This adaptation allows P. disiens to thrive in environments where nutrients are limited. Fascinatingly, P. disiens has been shown to produce bioactive compounds, such as prevotellins, which have been linked to antimicrobial and anti-inflammatory activities. These compounds have been found to inhibit the growth of pathogenic bacteria, highlighting the potential of P. disiens as a therapeutic agent in the treatment of certain diseases." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella disiens Negative Anaerobe 28130 UGTL00000000.1 Bac0000968 Prevotella intermedia str. KCOM 2832 "Prevotella intermedia strain KCOM 2832 is a Gram-negative, rod-shaped bacterium characterized by its anaerobic metabolism. This microbe is commonly found in diverse habitats, including the gingival sulci, oral cavity, gut, rumen, and urogenital tract. It is notably present in both subgingival and supragingival dental biofilms and contributes to the composition of subgingival plaque, indicating its role in oral microbial communities.↵↵As an anaerobic organism, Prevotella intermedia str. KCOM 2832 thrives in environments devoid of oxygen, which is characteristic of the deeper layers of dental biofilms and other anaerobic habitats. This adaptation not only allows for its survival in the human body but also suggests a potential metabolic versatility in utilizing various substrates present in these environments.↵↵The presence of Prevotella intermedia in both oral and gut ecosystems underscores its ecological significance in maintaining the microbial balance within these niches. Its ability to inhabit multiple environments may reflect its role in nutrient cycling and interactions with other microbial species, which could be crucial for understanding the dynamics of microbial communities in health and disease. Further studies on this strain could provide insights into its functional contributions to the microbiome and its interactions with host systems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 PENG00000000.1 Bac0000969 Prevotella intermedia str. KCOM 2836 "Prevotella intermedia str. KCOM 2836 is a Gram-negative, rod-shaped bacterium that primarily inhabits anaerobic environments, including the gingival sulci, oral cavity, gut, rumen, and urogenital tract. This microbe is commonly found in both subgingival and supragingival dental biofilms and is associated with the formation of subgingival plaque. Its presence in diverse microbial communities highlights its ecological versatility and potential role in maintaining or disrupting homeostasis within these habitats.↵↵As an obligate anaerobe, Prevotella intermedia str. KCOM 2836 thrives in low-oxygen conditions, a characteristic that aligns with its predominance in the oral cavity and gastrointestinal tract, where oxygen levels are minimal. The microbe's adaptability to various environments suggests it may play a role in the complex interactions occurring within microbial consortia, particularly in the context of oral health and disease. ↵↵Further exploration of its metabolic pathways and interactions with other microbial species could provide insights into its functional contributions to microbial communities, particularly in relation to dental and gastrointestinal health. Understanding such dynamics may illuminate the significance of Prevotella intermedia str. KCOM 2836 within the broader context of host-microbe interactions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_CP024697.1 Bac0000970 Prevotella intermedia str. ATCC 25611 and strain-17 "Prevotella intermedia str. ATCC 25611 and strain-17 are Gram-negative, rod-shaped anaerobic bacteria primarily found in various human and animal habitats. These include the gingival sulci and the oral cavity, as well as the gut, rumen, subgingival and supragingival dental biofilms, subgingival plaque, and urogenital tract. The anaerobic nature of P. intermedia suggests that it thrives in environments with limited oxygen, which aligns with its presence in biofilms and other anaerobic niches.↵↵As a member of the Prevotella genus, P. intermedia plays a role in complex microbial communities, particularly in the oral cavity where it can contribute to the formation of dental plaque. The diverse habitats of this strain highlight its adaptability and potential interactions with other microorganisms within these ecosystems. Understanding the ecological role of P. intermedia in dental biofilms could provide insights into its contribution to oral health and disease dynamics, as well as its potential interactions with host tissues in the gingival sulcus and urogenital tract. This adaptability underscores the importance of anaerobic bacteria in maintaining the balance of microbial communities in various environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_CP019303.1 Bac0000971 Prevotella intermedia str. KCOM 1741 "Prevotella intermedia str. KCOM 1741 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments. This microbe is predominantly found in various habitats within the human body, including the gingival sulci, oral cavity, gut, and urogenital tract, as well as in the rumen of ruminants. It is also a component of the complex microbial communities that form subgingival and supragingival dental biofilms and subgingival plaque.↵↵The anaerobic nature of Prevotella intermedia str. KCOM 1741 allows it to flourish in oxygen-limited environments, which is particularly relevant in the context of oral and dental health. Its presence in the gingival sulci and dental biofilms suggests a role in oral microbiota composition, potentially influencing local microbial interactions and the overall health of the periodontal ecosystem. ↵↵Given its diverse habitats and ecological niches, this strain may contribute to the metabolic processes within these environments, such as the fermentation of carbohydrates, which could impact nutrient availability and microbial dynamics. Understanding the specific contributions of Prevotella intermedia str. KCOM 1741 to these microbial communities may provide insights into the intricate relationships that govern oral and gut health, as well as the functioning of ruminant digestive systems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_CP024733.1 Bac0000972 Prevotella intermedia str. KCOM 1779 "Prevotella intermedia str. KCOM 1779 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments. This microorganism is predominantly found in diverse habitats including the gingival sulci, oral cavity, gut, rumen, and both subgingival and supragingival dental biofilms. Additionally, it can inhabit the urogenital tract, suggesting its adaptability to various ecological niches.↵↵As an anaerobe, P. intermedia str. KCOM 1779 relies on environments devoid of oxygen for growth and metabolic activities, which is characteristic of many members of the Prevotella genus. The presence of this bacterium in dental biofilms indicates its potential role in the complex microbial communities associated with oral health and disease, particularly in relation to periodontal conditions.↵↵The ecological versatility of Prevotella intermedia str. KCOM 1779 underscores its significance in both human health and the microbial dynamics within the rumen of herbivorous animals. Its ability to colonize various anatomical sites, coupled with its anaerobic lifestyle, highlights the importance of studying this bacterium to better understand its functional roles in different microbiomes. Furthermore, the presence of P. intermedia in the gut and urogenital tract suggests potential interactions with host metabolism and immune responses, warranting further investigation into its biological implications." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 PGGD00000000.1 Bac0000973 Prevotella intermedia str. OMA14 "Prevotella intermedia strain OMA14 is a Gram-negative, rod-shaped anaerobic bacterium predominantly found in diverse habitats, including the gingival sulci, oral cavity, gut, rumen, and urogenital tract. This microbe is notably present in subgingival and supragingival dental biofilms, as well as in subgingival plaque, where it may play a role in oral health and disease.↵↵As an anaerobe, P. intermedia OMA14 thrives in environments devoid of oxygen, which aligns with its presence in the heavily oxygen-depleted niches of the human body, such as the subgingival regions and the gut. The evolutionary adaptation to anaerobic conditions may contribute to its ecological success in these specific habitats, allowing it to interact with a variety of microbial communities.↵↵The presence of P. intermedia in both oral and gut environments suggests a potential role in inter-kingdom interactions, possibly influencing the health of the oral microbiome and, by extension, systemic health outcomes. Its diverse habitat range indicates that this strain could participate in complex microbial ecosystems, where it may contribute to nutrient cycling or the maintenance of microbial homeostasis. Understanding the ecological roles of P. intermedia OMA14 could provide insights into its contributions to both health and disease states, particularly in relation to oral and gastrointestinal microbiomes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_AP014598.1 Bac0000974 Prevotella intermedia "Prevotella intermedia is a Gram-negative, anaerobic microbe that thrives in a wide range of temperatures, falling under the category of mesophiles. As a heterotroph, it obtains its energy by breaking down organic compounds. The microbe produces energy through anaerobic respiration, specifically via fermentation, which involves the conversion of glucose into lactic acid. Its metabolic processes are facilitated by the presence of enzymes such as lactate dehydrogenase. The Gram-stained smear of P. intermedia reveals a distinctive silver-gray color, characteristic of Gram-negative bacteria. Morphologically, the microbe exhibits a rod-shaped morphology, typically between 0.5-1.5 μm in length and 0.1-0.5 μm in width. P. intermedia is found in various body sites, including the oral cavity, respiratory tract, genital tract, and gastrointestinal tract, of both humans and animals. Its anaerobic nature allows it to colonize niches with low oxygen levels, such as periodontal pockets and the human gut. As an obligate anaerobe, P. intermedia requires a lack of oxygen to survive. In the presence of oxygen, the microbe may experience oxidative stress, leading to damage or even death. However, its ability to thrive in anaerobic environments enables it to play a significant role in the breakdown of complex organic matter. In addition to its ecological importance, P. intermedia has been implicated in various diseases, including periodontitis, respiratory infections, and female genital tract infections. Its ability to degrade complex organic compounds also contributes to its involvement in dental caries and dental implant failures. Despite its pathogenic potential, P. intermedia is an essential member of the human microbiome, playing a vital role in decomposing organic matter and recycling nutrients." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 QXEM00000000.1 Bac0000975 Prevotella melaninogenica str. GAI 07411 "Prevotella melaninogenica strain GAI 07411 is a Gram-negative, non-sporulating rod that is strictly anaerobic and predominantly found in host-associated environments. This bacterium is part of the diverse genus Prevotella, which is notable for its role in the human microbiome, particularly within the oral cavity and gastrointestinal tract. As a member of the Bacteroidetes phylum, P. melaninogenica is adapted to thrive in low-oxygen conditions, utilizing fermentation pathways to metabolize a variety of substrates derived from host tissues or dietary components.↵↵The strain GAI 07411 likely contributes to the complex interplay of microbial communities within its habitat, influencing host health through metabolic interactions and the modulation of local immune responses. Its non-sporulating nature suggests a reliance on specific environmental conditions for survival, indicating that it may be sensitive to changes in the host's microbiome or external factors that could disrupt its anaerobic niche. ↵↵Understanding the role of P. melaninogenica strain GAI 07411 in its host environment can provide insights into the broader ecological dynamics of anaerobic microbes, especially in relation to nutrient cycling and the maintenance of microbial diversity. This knowledge may also help elucidate the implications of such bacteria in health and disease contexts, as their interactions with the host and other microorganisms can be crucial for maintaining homeostasis within the microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 28132 NZ_AP018051.1 Bac0000976 Segatella oulorum Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella oulorum 28136 FUXK00000000.1 Bac0000977 Rikenella microfusus Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Rikenella Rikenella microfusus anaerobic intestine 28139 UGVL00000000.1 Bac0000978 Cronobacter sakazakii "Cronobacter sakazakii is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, classified as a facultative anaerobe and a chemoheterotroph. This microorganism is primarily associated with food products, particularly powdered infant formula, but can also be found in various environmental niches, including soil, water, and plant materials. Its ability to survive under diverse conditions makes it a notable organism in both clinical and environmental microbiology. As a Gram-negative bacterium, C. sakazakii possesses a thin peptidoglycan layer surrounded by an outer membrane, which contributes to its resistance against certain antibiotics. The rod shape of the bacterium is an adaptive feature that aids in its motility and ability to colonize surfaces. Preferring mesophilic temperatures, it flourishes optimally between 30-37°C, aligning with the typical conditions found in human environments and food storage. As a facultative anaerobe, it can grow in both the presence and absence of oxygen, making it versatile in various ecological niches. Being a chemoheterotroph, C. sakazakii relies on organic compounds for carbon and energy. This metabolic flexibility allows it to thrive in nutrient-rich environments, such as those found in food products. The presence of this microbe in powdered infant formula is particularly concerning; it can cause severe gastrointestinal infections and, in some cases, meningitis in neonates, highlighting the importance of stringent food safety measures. Furthermore, Cronobacter sakazakii has demonstrated a remarkable ability to form biofilms, which contributes to its persistence in industrial and clinical settings. Its role in foodborne illness underscores the need for ongoing research and monitoring to mitigate associated health risks." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii Negative Rod No 1 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles Nonsporulating 28141 NZ_CP049260.1 Bac0000979 Cronobacter sakazakii str. ATCC 29544 "Cronobacter sakazakii str. ATCC 29544 is a Gram-negative, nonsporulating rod-shaped bacterium that typically arranges itself in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to warm-blooded hosts. As an anaerobe, C. sakazakii str. ATCC 29544 grows in environments devoid of oxygen, which may reflect its ecological niche within host-associated habitats.↵↵The specific ecological role of C. sakazakii, including strain ATCC 29544, remains an area of ongoing research; however, its association with various host environments suggests potential interactions that could influence microbial dynamics within these ecosystems. Notably, its growth conditions and morphological characteristics imply a potential adaptability to microenvironments within host organisms, which may play a role in nutrient acquisition and competition with other microbial species. Understanding such traits is essential for further exploration of the ecological implications and physiological adaptations of this bacterium within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii Negative Rod No 1 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles Nonsporulating 28141 NZ_CP011048.1 Bac0000980 Salmonella enterica subsp. enterica serovar Derby "Salmonella enterica subsp. enterica serovar Derby is a Gram-negative bacterium characterized by its spirilla shape and a tendency to form chains or exist as single cells. This microbe thrives optimally at a temperature of 37.0°C, which corresponds to the body temperature of many warm-blooded hosts, highlighting its adaptation to host-associated environments. As a chemoorganotroph, S. enterica serovar Derby utilizes organic compounds as its energy source, further emphasizing its association with host organisms where such nutrients are readily available. ↵↵The microaerophilic nature of this bacterium indicates that it requires reduced levels of oxygen for growth, which is consistent with its habitat within the intestinal tracts of various hosts. This adaptation allows S. enterica serovar Derby to survive in environments where oxygen levels fluctuate, such as the gut, where it encounters both aerobic and anaerobic conditions.↵↵Understanding the ecological role of S. enterica serovar Derby within its host can provide insights into its interactions with the host microbiome and potential contributions to nutrient cycling. Its specific adaptation to microaerophilic environments may also influence its competition with other gut microbes, potentially shaping the microbial community structure in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28144 VDEJ00000000.2 Bac0000981 Salmonella enterica subsp. enterica serovar Oranienburg "Salmonella enterica subsp. enterica serovar Oranienburg is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and ability to exist in both single and chain arrangements. This serovar thrives optimally at a temperature of 37.0°C, which is consistent with its association with host organisms, suggesting a potential adaptation to the warm-blooded animals it may inhabit. As a chemoorganotroph, S. enterica serovar Oranienburg utilizes organic compounds as its energy source, a trait that reflects its ecological niche within host environments where organic substrates are readily available.↵↵The microaerophilic nature of this bacterium implies a preference for environments with reduced oxygen levels, which can influence its survival strategies and interactions within host systems. Understanding these traits is crucial for elucidating the bacterium’s role within its ecological context, particularly in relation to nutrient cycling and host-microbe interactions. This adaptation to a microaerophilic habitat may provide insights into the evolutionary pressures faced by S. enterica serovar Oranienburg, shaping its metabolic pathways and interactions with other microbiota present in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28147 SGBM00000000.1 Bac0000982 Salmonella enterica subsp. enterica serovar Senftenberg "Salmonella enterica subsp. enterica serovar Senftenberg is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This serovar thrives optimally at 37.0°C, reflecting its adaptation to host-associated environments, where it typically encounters temperatures similar to those of warm-blooded animals. ↵↵As a chemoorganotroph, S. Senftenberg derives its energy from organic compounds, which aligns with its habitat within host organisms. This metabolic strategy may facilitate its survival and proliferation in diverse ecological niches, particularly in the gastrointestinal tracts of various hosts where organic substrates are readily available. ↵↵The microaerophilic nature of S. Senftenberg indicates a specific adaptation to environments with limited oxygen availability, which is commonly found in the intestinal lumen. Understanding its physiological traits, including its growth conditions and metabolic capabilities, is crucial for elucidating the environmental and ecological dynamics of this bacterium. This adaptation not only highlights its potential interactions within host microbiomes but may also reflect its evolutionary strategies to thrive in competitive microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28150 NZ_CP038594.1 Bac0000983 Serratia proteamaculans Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia liquefaciens 28151 UGYL00000000.1 Bac0000984 Yersinia aleksiciae "Yersinia aleksiciae is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, aerobic chemoheterotroph. This microbe thrives optimally at a temperature of 30.0°C and is predominantly found within the intestinal microflora of animals. Its aerobic nature indicates a reliance on oxygen for metabolic processes, which aligns with its ecological niche in the oxygen-rich environment of the intestine.↵↵As a member of the intestinal microbiota, Y. aleksiciae may play a role in the complex interplay of microbial communities that contribute to host digestion and overall health. The presence of this bacterium in animal intestines suggests its potential involvement in nutrient cycling and the maintenance of gut homeostasis. Furthermore, its adaptation to a specific temperature range indicates a level of specialization that may reflect the thermal conditions of its habitat. This specialization also prompts consideration of Y. aleksiciae's interactions with other gut inhabitants and its responses to environmental changes that could affect its ecological role. Understanding these dynamics may provide insights into the broader implications of Y. aleksiciae within gastrointestinal microbiomes and its potential contributions to host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia aleksiciae Negative rod No 1 Aerobe 30 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 28152 CQEM00000000.1 Bac0000985 Conservatibacter flavescens str. 7_4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Conservatibacter Conservatibacter flavescens 28161 PHHA00000000.1 Bac0000986 Vibrio metschnikovii Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio metschnikovii Marine 28172 UHIS00000000.1 Bac0000987 Magnetovibrio blakemorei str. MV-1 "Magnetovibrio blakemorei strain MV-1 is a Gram-negative bacterium characterized by its curved or spiral morphology and optimal growth temperature of 25.0°C. This microbe exhibits magnetotactic behavior, which implies it possesses magnetosomes—organelles that allow the organism to orient itself along magnetic fields, a trait that is often adaptive for navigating aquatic environments. ↵↵The curved or spiral shape of Magnetovibrio blakemorei str. MV-1 may influence its motility and interaction with the surrounding medium, facilitating its capacity to thrive in specific ecological niches. As a member of the magnetotactic bacteria, it is likely to inhabit environments where magnetic fields are present, such as sediments in freshwater or marine ecosystems. ↵↵The optimal growth temperature of 25.0°C suggests a preference for mesophilic conditions, indicating that this organism may play a role in nutrient cycling and organic matter degradation in moderately warm aquatic habitats. By utilizing magnetotaxis, Magnetovibrio blakemorei str. MV-1 may enhance its survival and ecological interactions, providing insights into the adaptive strategies of microorganisms within their habitats. Understanding these traits can contribute to broader ecological studies regarding microbial diversity and the role of magnetotactic bacteria in biogeochemical processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Magnetovibrionaceae Magnetovibrio Magnetovibrio blakemorei Gram-negative curved/spiral 25 mesophilic 28181 MCGG00000000.1 Bac0000988 Leptospira santarosai str. U160 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 28183 NZ_CP027843.1 Bac0000989 Capnocytophaga canimorsus str. Cc11 "Capnocytophaga canimorsus str. Cc11 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C. This microbe exhibits a microaerophilic oxygen requirement, indicating its preference for environments with reduced oxygen levels. As a chemoheterotroph, C. canimorsus str. Cc11 derives its energy from organic compounds, reflecting its adaptability to various nutritional environments.↵↵The habitat of C. canimorsus str. Cc11 is diverse, suggesting that it can occupy multiple ecological niches. This versatility may be indicative of its potential role in various biological interactions, particularly in environments where it may coexist with other microorganisms. Its presence in multiple habitats could also suggest a relationship with host organisms, potentially contributing to the microbial communities in those environments.↵↵Understanding the traits of C. canimorsus str. Cc11 not only aids in characterizing this specific strain but also provides insights into the ecological dynamics of the environments it inhabits. Its microaerophilic nature may allow it to occupy specific niches within host-associated microbiomes, where it could play a role in metabolic processes or influence the health of its host. Further research may illuminate the implications of these traits for its ecological interactions and potential roles in microbial communities." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga canimorsus Negative Rod No 1 Microaerophilic 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 28188 CDOK00000000.1 Bac0000990 Capnocytophaga cynodegmi "Capnocytophaga cynodegmi is a gram-negative, spiral-shaped bacterium that thrives in a temperature range of 20-37°C, placing it in the mesophilic temperature preference category. As a heterotroph, it obtains its energy by breaking down complex organic molecules, specifically glucose, rather than producing its own food through photosynthesis or chemosynthesis. This bacterium produces energy through cellular respiration, utilizing the pyruvate fermentation pathway. Capnocytophaga cynodegmi is known to inhabit a wide range of body sites across various species, including the human oral cavity, gastrointestinal tract, and genitourinary tract. It is also detected in animals such as dogs, cats, and horses. This versatility suggests that the bacterium has adapted to survive in a variety of ecological niches. Oxygen preference-wise, Capnocytophaga cynodegmi is a facultative anaerobe, meaning it can thrive in the presence of oxygen but can also survive without it. This adaptability allows it to colonize and remain in environments with varying levels of oxygen availability. Further research has revealed that Capnocytophaga cynodegmi plays a crucial role in the human oral microbiome, contributing to the breakdown of complex carbohydrates and the production of volatile sulfur compounds, which are responsible for the characteristic ""bad breath"" odor. In addition, studies have linked the bacterium to the development of periodontal diseases, emphasizing the importance of maintaining a balanced oral ecosystem to prevent the overgrowth of opportunistic pathogens. Notably, Capnocytophaga cynodegmi has been recognized as a zoonotic agent, capable of transmitting from animals to humans. While most infections are mild and self-limiting, severe cases can lead to sepsis and even death. Despite its potential pathogenicity, this bacterium serves as a valuable model for understanding the complexities of the human microbiome and the intricate relationships between microorganisms and their hosts." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga cynodegmi Negative Yes 1 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 28189 NZ_CP022378.1 Bac0000991 Capnocytophaga cynodegmi str. Ccy74 "Capnocytophaga cynodegmi str. Ccy74 is a nonsporulating, Gram-negative bacterium that primarily resides in the intestinal microflora of animals. This microbe exhibits chemoheterotrophic metabolism, deriving its energy and carbon from organic compounds present in its environment. It thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions typically found in the intestines of warm-blooded animals.↵↵As a member of the intestinal microbiota, Capnocytophaga cynodegmi str. Ccy74 may play a role in the complex interactions within the gut ecosystem, contributing to the overall health and homeostasis of its host. Its presence in the gut highlights the importance of such bacteria in the digestion of nutrients and the maintenance of gut health. Further studies may elucidate the specific metabolic pathways utilized by this strain, potentially revealing its contributions to nutrient cycling and its interactions with other microbial species in the intestinal environment. Understanding these dynamics can provide insights into the broader ecological roles of gut-residing bacteria and their impact on host physiology." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga cynodegmi Negative Yes 1 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 28189 CDOG00000000.1 Bac0000992 Aliarcobacter cryaerophilus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus 28198 NXGE00000000.1 Bac0000993 Aliarcobacter skirrowii Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter skirrowii 28200 QEYI00000000.1 Bac0000994 Sphingomonas sp. "Sphingomonas sp. is a Gram-negative bacterium commonly found in the habitats of hot springs, including the sediment and water associated with these thermally enriched environments. As an aerobic organism, Sphingomonas sp. requires oxygen for its metabolic processes, which is consistent with its ecological niche in oxygen-rich aquatic systems. ↵↵This microbe is notable for its ability to thrive in extreme temperatures, which may provide insights into its metabolic versatility and potential applications in biotechnology, particularly in the field of bioremediation or bioenergy. The presence of Sphingomonas sp. in hot spring ecosystems highlights its adaptability and the role it may play in biogeochemical cycles within these unique habitats. Additionally, the study of Sphingomonas sp. contributes to our understanding of microbial diversity and adaptation in extreme environments, potentially shedding light on evolutionary processes and the resilience of life under challenging conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. negative aerobic hot springs; sediment of hot springs; water 28214 QFNL00000000.1 Bac0000995 Colwellia psychrerythraea str. ND2E "Colwellia psychrerythraea str. ND2E is a Gram-negative bacterium characterized by its rod shape and singular cell arrangement, which reflects its adaptation to specialized habitats. This psychrophilic organism thrives optimally at a temperature of 8.0°C, indicating a preference for cold environments, typical of polar or deep-sea ecosystems. As a facultatively anaerobe, Colwellia psychrerythraea str. ND2E possesses metabolic flexibility that allows it to utilize both aerobic and anaerobic respiration, thereby enhancing its survival in varying oxygen conditions.↵↵The organism's cold-adapted physiology and metabolic versatility suggest it plays a significant role in biogeochemical cycles in its native environments, potentially influencing nutrient cycling and organic matter decomposition in cold marine ecosystems. Its ability to thrive at low temperatures while accommodating fluctuations in oxygen availability positions Colwellia psychrerythraea str. ND2E as a key player in the microbial community dynamics of specialized habitats, where it may interact with other microorganisms and contribute to the overall ecological balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea Negative Rod Yes 1 2 Facultatively anaerobe 8 Psychrophilic Specialized Free living Singles 28229 JQED00000000.1 Bac0000996 Haloarcula vallismortis Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula vallismortis 28442 FNOF00000000.1 Bac0000997 Clavibacter michiganensis str. CFBP7576 "Clavibacter michiganensis strain CFBP7576 is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as singles. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As an aerobe, C. michiganensis str. CFBP7576 requires oxygen for its metabolic processes, which is a notable characteristic that influences its ecological niche and habitat preferences.↵↵The organism's ability to inhabit multiple environments suggests a versatile adaptability, potentially allowing it to colonize diverse substrates. This adaptability may also play a role in its interactions with various plant hosts, although specific associations are not detailed in the provided traits. The structural attributes, including its rod shape and Gram-positive nature, contribute to its resilience in various habitats, offering insights into its survival mechanisms in potentially competitive microbial communities.↵↵In summary, Clavibacter michiganensis str. CFBP7576 exemplifies a microbe well-adapted to aerobic environments at moderate temperatures, highlighting its possible ecological roles in nutrient cycling and interactions within its habitat. Further investigation into its specific ecological interactions could provide valuable insights into its functional significance in microbial ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 28447 MDJX00000000.1 Bac0000998 Clavibacter michiganensis str. CFBP8017 "Clavibacter michiganensis str. CFBP8017 is a Gram-positive, rod-shaped bacterium that typically exhibits a cell arrangement characterized by pairs and singles. This strain thrives in aerobic conditions and has an optimal growth temperature of 25.0°C, suggesting a preference for moderate environmental temperatures. Its habitat is diverse, indicating that it may occupy various ecological niches.↵↵The rod shape and specific arrangement of C. michiganensis str. CFBP8017 may play a role in its interactions within its environment, potentially influencing its competitive abilities and nutrient acquisition strategies. As an aerobe, the strain relies on oxygen for its metabolic processes, highlighting the importance of aerobic respiration in its ecological niche. The adaptability of this bacterium to multiple habitats underscores its potential ecological versatility. ↵↵Further investigation into the ecological role of Clavibacter michiganensis str. CFBP8017 could reveal insights into its interactions with other microorganisms and its potential contributions to the microbial community dynamics in diverse environments." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 28447 MDJY00000000.1 Bac0000999 Clavibacter michiganensis "Clavibacter michiganensis is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as single cells. This organism thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. Isolated from multiple habitats, C. michiganensis demonstrates a versatile ecological niche, suggesting its adaptability to various environmental conditions.↵↵The rod shape and specific cell arrangement of Clavibacter michiganensis contribute to its identification and classification within microbiological studies. Its Gram-positive nature implies the presence of a thick peptidoglycan layer in the cell wall, a characteristic that can influence its interactions with other microorganisms and its susceptibility to certain antibiotics.↵↵Given its ability to thrive in various habitats, Clavibacter michiganensis represents a microbial entity capable of playing diverse roles within ecosystems, potentially influencing nutrient cycling or participating in symbiotic relationships. Such versatility underscores the importance of further research to elucidate its ecological functions and interactions within microbial communities. Understanding these dynamics may reveal insights into the overall health and stability of the environments it inhabits." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 28447 PSXW00000000.1 Bac0001000 Clavibacter michiganensis str. CFBP 7491 "Clavibacter michiganensis str. CFBP 7491 is a Gram-positive rod-shaped bacterium that typically occurs in pairs or as single cells. This microbe thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As an aerobic organism, C. michiganensis str. CFBP 7491 requires oxygen for its metabolic processes, which suggests its adaptation to oxygen-rich habitats.↵↵The bacterium's ability to inhabit multiple environments highlights its ecological versatility, potentially allowing it to colonize various substrates or compete in diverse microbial communities. The structure of C. michiganensis, characterized by its rod shape and specific cell arrangement, may influence its interactions with other microorganisms and its survival strategies in fluctuating habitats. Understanding the physiological traits of C. michiganensis str. CFBP 7491 can provide insights into its role within its ecological niche and its potential interactions with other organisms in its environment." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 28447 QWEB00000000.1 Bac0001001 Komagataeibacter xylinus str. DSM 2325 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter xylinus 28448 NZ_CP025271.1 Bac0001002 Komagataeibacter xylinus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter xylinus 28448 NKUC00000000.1 Bac0001003 Burkholderia pseudomallei "Burkholderia pseudomallei is a rod-shaped, Gram-negative bacterium that thrives in terrestrial environments and exhibits strict aerobic growth requirements. This microbe is notable for its environmental resilience, often found in a variety of soil and water sources, particularly in tropical and subtropical regions. Its ability to survive in diverse ecological niches is indicative of its metabolic versatility, allowing it to utilize various organic compounds for energy.↵↵As an aerobic organism, Burkholderia pseudomallei requires oxygen for its growth and metabolism, which may influence its distribution and survival strategies in different habitats. The bacterium's morphology and Gram-negative cell wall structure contribute to its adaptability and resistance to certain environmental stresses, including antimicrobial substances.↵↵Recent studies have highlighted the bacterium's capacity for biofilm formation, which may enhance its survival in natural ecosystems and its persistence in contaminated sites. This characteristic could play a significant role in its ecological interactions, both within its habitat and potentially with other microbial communities. Understanding the ecological implications of Burkholderia pseudomallei's lifestyle and survival mechanisms may provide deeper insights into its role in soil ecosystems and its interactions with other organisms in its environment." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 28450 NZ_CP025265.1 Bac0001004 Sphingobacterium multivorum Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium multivorum roots 28454 UAUU00000000.1 Bac0001005 Methanofollis liminatans DSM 4140 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis liminatans 28892 NZ_CM001555.1 Bac0001006 Campylobacter helveticus str. ATCC 51209 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter helveticus 28898 NZ_CP020478.1 Bac0001007 Campylobacter helveticus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter helveticus 28898 VDBP00000000.1 Bac0001008 Salmonella enterica "Salmonella enterica, a gram-negative, rod-shaped bacterium, prefers a moderate temperature range between 37°C and 43°C, categorizing it as a mesophilic organism. This microbe is a heterotroph, relying on organic compounds for its energy and carbon requirements. It produces energy through aerobic respiration, utilizing oxygen as its primary electron acceptor. S. enterica is ubiquitous, found in a wide range of environments, including water, soil, plants, animals, and humans. It can inhabit any body site, including the gastrointestinal tract, urinary tract, bloodstream, and even the eyes. This versatility is likely due to its ability to adapt to various conditions and its efficient mobility, which allows it to quickly colonize new hosts and environments. As an obligate aerobe, S. enterica requires oxygen to survive and thrive. It cannot grow or replicate in its absence, making it sensitive to anaerobic conditions. This means that any environment devoid of oxygen would be inhospitable to this microbe. Salmonella enterica is significant due to its role as a major human pathogen, capable of causing food poisoning, typhoid fever, and other related illnesses. Its ability to infect and replicate within the gastrointestinal tract makes it a formidable opponent in the constant battle between microbes and the human immune system. In addition to its pathogenic properties, S. enterica has also been found to play a role in environmental processes, such as nutrient cycling and decomposition. Its ability to degrade organic matter makes it an important component of ecosystems, contributing to the breakdown of complex molecules and the release of essential nutrients. Despite its significant impacts on human health and the environment, S. enterica remains a valuable model organism for scientists studying bacterial behavior, pathogenesis, and ecology. Its versatility, adaptability, and ease of cultivation make it an ideal subject for research, promising new insights into the complex interactions between microbes and their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles 28901 NZ_CP014051.2 Bac0001009 Salmonella enterica subsp. salamae "Salmonella enterica subsp. salamae is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This subspecies thrives optimally at 37.0°C, reflecting its adaptation to warm-blooded hosts, although it can also be found in a variety of habitats, indicating a degree of environmental versatility. As a chemoorganotroph, S. enterica subsp. salamae derives its energy from organic compounds, which allows it to inhabit diverse ecological niches where organic matter is available. ↵↵Additionally, this microbe is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. This characteristic further enhances its adaptability, enabling it to survive in fluctuating environments where oxygen levels may vary. Given its broad habitat range and metabolic capabilities, S. enterica subsp. salamae may play a role in nutrient cycling within its ecosystems, potentially participating in the breakdown of organic materials and influencing microbial community dynamics. ↵↵Overall, while specific pathogenicity traits are not addressed in the available data, the metabolic flexibility and diverse habitat preferences of S. enterica subsp. salamae underscore its ecological importance in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles 28901 RSKH00000000.1 Bac0001010 Candidatus Magnetobacterium bavaricum Pseudomonadati Nitrospirota Thermodesulfovibrionia Thermodesulfovibrionales Candidatus Magnetobacteriaceae Candidatus Magnetobacterium Candidatus Magnetobacterium bavaricum 29290 LACI00000000.1 Bac0001011 Domibacillus aminovorans str. DSM 1314 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Domibacillus Domibacillus aminovorans 29332 LQWY00000000.1 Bac0001012 Bacillus thuringiensis serovar kurstaki str. HD 1 "Bacillus thuringiensis serovar kurstaki str. HD 1 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and its facultative anaerobic metabolism. This strain is primarily associated with host organisms, suggesting a specific ecological niche where it may interact with various living systems. ↵↵As a member of the Bacillus genus, B. thuringiensis serovar kurstaki str. HD 1 exhibits the characteristic ability to form endospores, which enables it to survive adverse environmental conditions and contributes to its persistence in nature. The facultative anaerobic nature of this bacterium allows it to thrive in both aerobic and anaerobic environments, thereby expanding its ecological versatility.↵↵This strain is particularly notable for its role in biological pest control, as it produces insecticidal crystal proteins that are effective against certain lepidopteran pests. The host-associated habitat indicates that it may play a significant role in the microbial communities associated with particular host organisms, potentially influencing their health or behavior. Such interactions highlight the complexity of microbial ecology and the potential for beneficial applications in sustainable agriculture. Understanding the traits and behaviors of B. thuringiensis serovar kurstaki str. HD 1 can provide insights into the development of biocontrol strategies that leverage its natural attributes while minimizing the ecological footprint associated with traditional chemical pesticides." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal 29339 NZ_CP010000.1 Bac0001013 Thomasclavelia spiroformis "Thomasclavelia spiroformis is a Gram-positive, anaerobic bacterium characterized by its distinctive spiral shape. This microbe thrives in oxygen-free environments, which is a critical trait that shapes its ecological niche and metabolic processes. The Gram-positive nature of T. spiroformis suggests a thick peptidoglycan layer in its cell wall, which may contribute to its structural integrity and resilience in anaerobic conditions.↵↵As an anaerobe, Thomasclavelia spiroformis likely engages in fermentation or other anaerobic metabolic pathways to obtain energy, although specific metabolic substrates and byproducts remain to be fully characterized. The adaptation to an oxygen-free environment implies a potential role in various ecosystems, including those involving decaying organic matter or within the gastrointestinal tracts of certain animals, where anaerobic conditions are prevalent.↵↵This bacterium’s spiral morphology could provide advantages in motility or colonization within its habitat, potentially allowing it to navigate through dense substrates or complex microbial communities. Understanding the ecological roles and metabolic capabilities of Thomasclavelia spiroformis may reveal important insights into anaerobic microbial interactions and their contributions to nutrient cycling in low-oxygen environments. Further research is warranted to elucidate its specific ecological functions and interactions with other microorganisms." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Thomasclavelia spiroformis Positive Anaerobe 29348 QSVF00000000.1 Bac0001014 Thermoanaerobacter thermocopriae Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter thermocopriae 29350 LGEO00000000.1 Bac0001015 Faecalimonas nexilis "Faecalimonas nexilis is an anaerobic, rod-shaped bacterium characterized by its ability to sporulate and utilize a range of organic compounds as a chemoheterotrophic energy source. This microbe has been identified in various habitats, suggesting a versatile ecological niche that allows it to thrive in diverse environments, particularly those that are rich in organic matter.↵↵As a sporulating organism, F. nexilis has the capability to form spores, which may confer resilience to harsh conditions, thereby facilitating survival in environments that may experience fluctuations in nutrient availability or other stressors. The anaerobic requirement highlights its adaptation to environments devoid of oxygen, possibly including the gastrointestinal tracts of animals, where it may play a role in nutrient cycling and microbial community dynamics.↵↵The ecological significance of F. nexilis may extend to its potential interactions within microbial communities, particularly in anaerobic environments. By utilizing organic compounds, it may contribute to the breakdown of complex substrates, thereby influencing the overall metabolic processes within its habitat. Understanding the specific roles and interactions of F. nexilis in various ecological settings could provide insights into its function in microbial consortia and its contributions to ecosystem health and stability." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalimonas Faecalimonas nexilis Rod No 1 Anaerobic Chemoheterotroph Multiple Sporulating 29361 QSCT00000000.1 Bac0001016 Clostridium paraputrificum str. 373-A1 "Clostridium paraputrificum str. 373-A1 is a Gram-positive, strictly anaerobic bacterium. This organism is part of the Clostridia class, which is recognized for its ability to thrive in oxygen-depleted environments. The Gram-positive nature of C. paraputrificum str. 373-A1 indicates a thick peptidoglycan layer in its cell wall, characteristic of many members of the Clostridium genus. ↵↵As an anaerobe, this strain relies on fermentation or other anaerobic metabolic pathways for energy production, making it well-suited for living in environments such as the gastrointestinal tracts of animals or decaying organic matter. The ability to ferment a variety of substrates may contribute to its ecological role in nutrient cycling, particularly in the decomposition of complex organic materials. ↵↵C. paraputrificum str. 373-A1’s adaptation to anaerobic conditions highlights its potential involvement in various biochemical processes, such as the breakdown of proteins and the production of short-chain fatty acids, which can be beneficial to both the microbe and its surrounding environment. Understanding the metabolic capabilities of this strain might provide insights into its contributions to soil health and organic matter turnover in anaerobic ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium paraputrificum Positive Anaerobe 29363 MAPZ00000000.1 Bac0001017 Lacrimispora sphenoides Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Lacrimispora sphenoides 29370 FOIP00000000.1 Bac0001018 Clostridium thermobutyricum str. 209318 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium thermobutyricum 29372 AGYT00000000.1 Bac0001019 Staphylococcus arlettae "Staphylococcus arlettae is a Gram-positive, cocci-shaped bacterium that thrives best at moderate temperatures, making it a mesophile. As a chemoheterotroph, it derives its energy and carbon from organic compounds. This microbe can be found in various body sites across different species, notably residing on human skin, mucosal surfaces, and in the respiratory tract, where it can contribute to the microbial flora. S. arlettae is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments by utilizing oxygen when present, but also fermenting substrates in its absence. The Gram-positive nature of S. arlettae reflects its thick peptidoglycan layer, which provides structural support and protection in various environments. Its cocci shape contributes to its ability to form clusters, characteristic of the Staphylococcus genus, allowing it to thrive in diverse habitats. As a mesophile, it is well-suited for growth in warmer conditions, such as those found in the human body, where it can proliferate effectively. Chemoheterotrophic organisms like S. arlettae are particularly important in ecological contexts because they play a role in nutrient cycling and can influence host health. In humans and other animals, this bacterium can act as a commensal organism, coexisting without causing disease. However, under certain conditions, such as when the host's immune defenses are compromised, S. arlettae can become opportunistic and lead to infections. Staphylococcus arlettae's relative rarity in clinical microbiology compared to more notorious Staphylococcus species, like S. aureus, piques interest: its potential as a model organism for studying bacterial behavior and interactions in polymicrobial communities. This bacterium underscores the complex dynamics of human-associated microbiota and their implications for health and disease." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus arlettae Positive Cocci No 1 aerobic Chemoheterotroph Host epidermis Nonsporulating 29378 UGZE00000000.1 Bac0001020 Staphylococcus auricularis "Staphylococcus auricularis is a species of cocci-shaped bacteria that exhibits aerobic metabolism. This microbe is characterized by its spherical morphology, which is typical of many members of the Staphylococcus genus. As an aerobic organism, S. auricularis requires oxygen for its growth and metabolic activities, distinguishing it from anaerobic counterparts that thrive in oxygen-depleted environments. ↵↵While specific pathogenicity traits and ecological roles of S. auricularis remain to be fully elucidated, its classification within the Staphylococcus genus suggests potential interactions with human hosts and other organisms. Members of this genus are often found in various environments, including skin and mucosal surfaces, indicating that S. auricularis may also inhabit similar niches. ↵↵Given its aerobic nature, S. auricularis may play a role in microbial communities where oxygen is readily available, potentially contributing to the overall microbial diversity in environments such as the human microbiome. Its presence and interactions with other microbes could offer insights into microbial dynamics and the balance of commensal and pathogenic relationships. Further research into S. auricularis could illuminate its specific functions and significance within these ecological contexts." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus auricularis Cocci aerobic 29379 NZ_LS483491.1 Bac0001021 Staphylococcus cohnii "Staphylococcus cohnii is a gram-positive, cocci-shaped bacterium classified as a facultative anaerobe, thriving at a temperature range of 30-37°C, and is categorized as a chemoheterotroph. This microbe is typically found in various body sites, including skin, mucosal surfaces, and occasionally, the respiratory and gastrointestinal tracts of humans and other animals. As a gram-positive organism, Staphylococcus cohnii retains the crystal violet stain used in the Gram staining procedure, leading to a vibrant purple appearance under a microscope. Its spherical shape contributes to its classification as a coccus bacterium. The bacterium's facultative anaerobic nature allows it to adapt to both aerobic and anaerobic conditions, making it versatile in its metabolic processes. It primarily relies on organic compounds for energy and carbon, characteristic of chemoheterotrophs, allowing it to survive in complex environments such as human tissues. Staphylococcus cohnii is part of the normal skin flora, which plays a role in protecting against pathogenic microbes by competing for resources and producing antimicrobial substances. However, in immunocompromised individuals or in the presence of medical devices such as catheters, it can act as an opportunistic pathogen, potentially leading to infections. This species of Staphylococcus possesses unique traits, such as the ability to produce biofilms, which enhances its survival and persistence in hostile environments. Notably, it has been studied for its antibiotic resistance patterns, indicating a growing concern in clinical settings as it can harbor genes that confer resistance to various antibiotics. This raises important implications for infection control and treatment strategies in healthcare settings." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus cohnii Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 29382 QXTC00000000.1 Bac0001022 Staphylococcus equorum subsp. equorum Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus saccharolyticus 29383 RXXC00000000.1 Bac0001023 Staphylococcus kloosii Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus kloosii aerobic 29384 LUGM00000000.1 Bac0001024 Staphylococcus saprophyticus "Staphylococcus saprophyticus is a gram-positive, spherical-shaped bacterium that thrives in a temperature range of 25-37°C, falling under the category of mesophiles. As a heterotroph, it derives its energy from the degradation of organic compounds, primarily consuming carbohydrates, proteins, and fats. Its metabolism is characterized by aerobic respiration, where it converts glucose into ATP, utilizing the citric acid cycle and oxidative phosphorylation. This microbe is ubiquitous, colonizing various body sites in all human species, including the skin, respiratory tract, gastrointestinal tract, and genitourinary tract. Notably, S. saprophyticus is a prominent cause of urinary tract infections, particularly in young women, where it can adhere to the bladder and urethra, causing inflammation and discomfort. In terms of oxygen preference, S. saprophyticus is a facultative anaerobe, meaning it can survive and thrive in the presence or absence of oxygen. However, it grows more rapidly in aerobic conditions, where it can exploit the energy-rich environment to maximize its metabolic activities. Furthermore, S. saprophyticus is resistant to many antibiotics, including beta-lactam antibiotics, and has developed mechanisms to evade the host's immune response. Its ability to form biofilms on surfaces and colonize the urinary tract makes it a significant pathogen, highlighting the importance of thorough hygiene practices and prompt medical attention for urinary tract infections. In the context of medical research, S. saprophyticus has been used as a model organism to study the pathogenesis of urinary tract infections, as well as the development of novel antibiotic therapies and diagnostic tools. Its unique characteristics have also led to the discovery of novel enzymes and biomolecules with potential applications in biotechnology and medicine." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus hominis Positive Cocci No 1 1 Aerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 29385 UHDX00000000.1 Bac0001025 Staphylococcus capitis "Staphylococcus capitis, a ubiquitous microbe, is a Gram-positive, spherical-shaped bacterium that thrives in temperatures ranging from 20°C to 40°C, falling under the category of mesophiles. As a chemoheterotroph, it relies on complex organic compounds as its energy source, breaking them down anaerobically to produce ATP through fermentation. S. capitis is found in almost all body sites across all human species, including the skin, mucous membranes, and respiratory, gastrointestinal, and genitourinary tracts. Its ability to inhabit diverse environments is attributed to its remarkable adaptability and robustness. As an obligate anaerobe, S. capitis requires an oxygen-free environment to survive and multiply. It is unable to tolerate even low levels of oxygen, making it highly susceptible to oxidative stress. However, this anaerobic nature also allows it to thrive in environments where other microorganisms may struggle to survive. In terms of energy production, S. capitis employs a unique mechanism, relying on the breakdown of amino acids, sugars, and other organic compounds to generate ATP. This process involves the conversion of glucose into lactic acid, a key byproduct of anaerobic metabolism. Interestingly, S. capitis has been linked to various human diseases, including skin infections, sepsis, and endocarditis. Moreover, it has been found to play a role in the development of biofilms, complex communities of microorganisms that adhere to surfaces and are notoriously difficult to eradicate. S. capitis is also known to exhibit an impressive ability to develop resistance to antimicrobial agents, making it a significant public health concern. Its capacity to survive and thrive in the face of antimicrobial stress is largely attributed to its ability to adapt and evolve rapidly, rendering traditional treatment approaches less effective." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus capitis Positive Cocci Facultative anaerobe 29388 CVUF00000000.1 Bac0001026 Dolosigranulum pigrum Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Dolosigranulum Dolosigranulum pigrum 29394 NAQP00000000.1 Bac0001027 Rhodoplanes elegans str. DSM 11907 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodoplanes Rhodoplanes elegans anaerobic 29408 NPEU00000000.1 Bac0001028 Rhodoplanes roseus str. DSM 5909 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodoplanes Rhodoplanes roseus anaerobic 29409 NPEX00000000.1 Bac0001029 Acinetobacter haemolyticus str. TJR01 "Acinetobacter haemolyticus strain TJR01 is a Gram-negative bacterium characterized by its aerobic metabolic requirements. This strain is part of the Acinetobacter genus, which is known for its diverse environmental presence and ability to thrive in various habitats. The Gram-negative classification of A. haemolyticus indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that is typical of this group and contributes to its resilience against certain antimicrobial agents.↵↵As an aerobe, strain TJR01 requires oxygen for its growth and metabolic processes, positioning it within the ecological niches where oxygen is readily available. This oxygen dependency suggests that A. haemolyticus may play roles in environments that support aerobic microbial communities, potentially contributing to biogeochemical cycles. The strain's metabolic characteristics, along with its ability to survive in diverse environments, highlight its ecological versatility.↵↵Overall, the traits of Acinetobacter haemolyticus str. TJR01 exemplify the adaptive strategies employed by bacteria within the Acinetobacter genus, allowing them to occupy various ecological niches and participate in complex microbial interactions. Further investigation into its ecological roles could provide insights into its contributions to nutrient cycling and microbial community dynamics in aerobic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 NZ_CP038010.1 Bac0001030 Acinetobacter haemolyticus str. TJS01 "Acinetobacter haemolyticus strain TJS01 is a Gram-negative, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. This strain, belonging to the genus Acinetobacter, exhibits distinct morphological and physiological traits typical of its classification. The Gram-negative nature of A. haemolyticus suggests a complex cell wall structure, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵As an aerobe, A. haemolyticus str. TJS01 requires oxygen for its metabolic processes, indicating it likely engages in aerobic respiration to generate energy. This trait may confer advantages in environments where oxygen is readily available, potentially allowing for competitive growth in various ecological niches. ↵↵The presence of this strain in its natural habitat could indicate its role in nutrient cycling or as a participant in microbial communities, where aerobic conditions prevail. Understanding the specific interactions and ecological roles of A. haemolyticus str. TJS01 within its environment could provide insights into microbial dynamics and the functionality of bacterial populations in oxygen-rich ecosystems. Further research may elucidate its contributions to these complex biological systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 NZ_CP018873.1 Bac0001031 Acinetobacter haemolyticus str. XH900 "Acinetobacter haemolyticus strain XH900 is a Gram-negative bacterium characterized by its requirement for oxygen, classifying it as an aerobic organism. Members of the Acinetobacter genus are known for their metabolic versatility, and strain XH900 is no exception, displaying the ability to thrive in oxygen-rich environments. ↵↵The Gram-negative status of A. haemolyticus XH900 implies a complex cell wall structure, which consists of a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structural feature is significant as it contributes to the bacterium's resilience against various environmental stresses and antimicrobial agents.↵↵While specific details regarding the strain's pathogenicity or ecological niche are not provided, the traits of A. haemolyticus suggest that it may be capable of surviving in diverse habitats, potentially including soil, water, or clinical settings. The ability to grow in aerobic conditions may allow this strain to exploit environments where oxygen is readily available, contributing to its adaptability.↵↵Overall, Acinetobacter haemolyticus strain XH900 exemplifies the ecological adaptability of Gram-negative aerobes, underscoring the importance of oxygen in microbial survival and proliferation in various niches. Further investigation into this strain could elucidate its role within microbial communities and its interactions with other organisms in oxygen-rich environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 NZ_CP018261.1 Bac0001032 Moraxella ovis "Moraxella ovis is a Gram-negative coccus that exhibits microaerophilic growth characteristics, requiring reduced oxygen levels for optimal development. This bacterium is part of the Moraxellaceae family and is known to inhabit various environments, although specific ecological niches are not detailed in the available data. ↵↵As a microaerophile, Moraxella ovis thrives in environments where oxygen concentrations are lower than those typically found in the atmosphere, suggesting an adaptation to specific habitats that provide such conditions. This trait may influence its interactions with other microbial communities and its potential roles in various biological processes. ↵↵While Moraxella ovis is recognized within the context of its morphological and physiological traits, further research into its specific ecological interactions and functional roles in its habitat may yield insights into its contributions to microbial diversity and ecosystem dynamics. Understanding the environmental preferences and metabolic capabilities of Moraxella ovis could help clarify its significance in both natural and anthropogenic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella ovis negative Coccus microaerophile 29433 UGPW00000000.1 Bac0001033 Phytopseudomonas flavescens Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Phytopseudomonas Phytopseudomonas flavescens 29435 FNDG00000000.1 Bac0001034 Pseudomonas savastanoi "Pseudomonas savastanoi is a Gram-negative, rod-shaped bacterium that thrives in moderate temperatures, ranging from 15°C to 30°C, falling into the mesophilic temperature preference category. As a chemoheterotroph, it derives its energy from the breakdown of organic compounds, utilizing various sugars and amino acids as its primary sources of carbon and energy. Pseudomonas savastanoi is able to produce energy through a process known as cellular respiration, where it converts the energy from the breakdown of glucose and other organic compounds into ATP. This bacterium is capable of inhabiting various environments, including soil, water, and plant tissues, making it a ubiquitous microbe found on all body sites in all possible species. In terms of oxygen preference, Pseudomonas savastanoi is a facultative anaerobe, meaning it can grow in the presence or absence of oxygen. While it can tolerate aerobic conditions, it is equally capable of surviving and growing in anaerobic environments by utilizing alternative metabolic pathways. Pseudomonas savastanoi has been found to be a plant pathogen, particularly affecting the olive tree, causing knots on the stems and branches (olive knot disease). It has also been linked to diseases in other plant species, including sweet potatoes and soybeans. One notable aspect of Pseudomonas savastanoi is its ability to form complex biofilms, allowing it to adhere to surfaces and resist environmental stresses. This adaptation enables the bacteria to persist in its environment, facilitating the transmission of disease to other plants. In addition, Pseudomonas savastanoi has been recognized for its potential applications in biotechnology, such as the production of antibiotics, anti-inflammatory compounds, and biofertilizers." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 29438 RBTE00000000.1 Bac0001035 Brucella melitensis "Brucella melitensis, a gram-negative, rod-shaped microbe, thrives in temperatures ranging from 25°C to 39°C, categorizing it as a mesophile. As a facultative chemoheterotroph, it derives energy from the breakdown of organic compounds, utilizing carbon sources such as glucose and glycogen. This microbe's metabolism is fueled by aerobic respiration, utilizing oxygen as its primary energy source. In the presence of sufficient oxygen, it produces ATP through the process of cellular respiration, releasing carbon dioxide and water as byproducts. Brucella melitensis is ubiquitous, colonizing various body sites across all possible species, including humans, animals, and milk, where it infects mammary glands, causing brucellosis. It can also be found in soil and water, potentially transmitting infection through contact with contaminated environments. As an obligate aerobe, Brucella melitensis requires oxygen to survive and flourish. It cannot tolerate anaerobic conditions, as it lacks the necessary mechanisms to function in the absence of oxygen. A common zoonotic pathogen, Brucella melitensis is responsible for significant morbidity and mortality worldwide. It is typically transmitted through contact with infected animals, contaminated milk, or contaminated soil and water. In humans, it can cause a range of symptoms, from mild to severe, including fever, headache, and joint pain. In addition to its significant impact on human health, Brucella melitensis has also been recognized as a model organism for studying intracellular parasitism, providing valuable insights into the mechanisms of microbial pathogenesis and host-pathogen interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella melitensis Negative Cocci No 1 2 Facultative aerobe 37 Mesophilic HostAssociated Free living Chains - Pairs - Singles 29459 NZ_CP035797.1 Bac0001036 Veillonella parvula str. DNF00876 "Veillonella parvula str. DNF00876 is a Gram-negative, anaerobic cocci bacterium that typically exhibits a cellular arrangement in chains or pairs. This strain is host-associated, suggesting its presence in specific biological environments, likely within the microbiota of mammals. As an anaerobe, V. parvula str. DNF00876 flourishes in oxygen-depleted conditions, which are often found in various niches within the host's body, such as the gastrointestinal tract.↵↵The coccoid shape and chain-like or paired arrangement of this organism are characteristic features that may play a role in its interactions within host-associated environments. While specific pathways of interaction with the host are not detailed, the fact that it resides in a host-associated habitat may indicate potential symbiotic relationships or involvement in metabolic processes that contribute to the maintenance of homeostasis within the host microbiome.↵↵Understanding the traits of Veillonella parvula str. DNF00876 not only highlights its adaptability to anaerobic conditions but also emphasizes its potential significance in the complex interplay of microbial communities within the host, where it may contribute to metabolic functions, such as the fermentation of carbohydrates. This strain exemplifies the diverse functional roles that anaerobic bacteria can play in maintaining the health of their host organisms." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella parvula Negative Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Chains - Pairs 29466 LSDP00000000.1 Bac0001037 Veillonella parvula "Veillonella parvula is a Gram-negative, cocci-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the oral cavity, gut, and urogenital tract, of numerous species, including humans, animals, and insects, and is an Obligate Anaerobe. As a Gram-negative microbe, Veillonella parvula has a unique outer membrane containing lipopolysaccharides, which provides protection against environmental stresses. Its cocci shape allows it to maintain a large surface area, facilitating the uptake of nutrients and interaction with other microbes. The mesophilic temperature preference of Veillonella parvula enables it to grow optimally at temperatures between 20-45°C, making it well-suited to inhabit various ecosystems. As a Chemoheterotroph, Veillonella parvula relies on organic compounds for energy and carbon, breaking down lactate, pyruvate, and other substrates to sustain its growth. The presence of Veillonella parvula in diverse body sites and species highlights its adaptability and ability to form symbiotic relationships with its hosts. As an Obligate Anaerobe, Veillonella parvula requires the absence of oxygen to grow, which is reflected in its metabolic pathways and enzymatic systems. Veillonella parvula plays a significant role in the fermentation of lactate, producing propionic acid, acetate, and carbon dioxide, which can influence the pH and composition of its environment, and its ability to metabolize lactate has implications for the development of novel therapeutic strategies, particularly in the treatment of diseases associated with dysbiosis, such as periodontitis and inflammatory bowel disease." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella parvula Negative Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Chains - Pairs 29466 PKHW00000000.1 Bac0001038 Photorhabdus luminescens Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus luminescens 29488 PUWU00000000.1 Bac0001039 Photorhabdus luminescens str. LN2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus luminescens 29488 JQOC00000000.1 Bac0001040 Aeromonas enteropelogenes str. 1999lcr Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas enteropelogenes aerobic 29489 JMGO00000000.2 Bac0001041 Vibrio furnissii "Vibrio furnissii is a gram-negative, rod-shaped bacterium classified as a mesophile that thrives optimally at moderate temperatures, is a chemoheterotroph, and is considered a facultative anaerobe. This bacterium is part of the Vibrio genus, which is notable for its curved shapes resembling a comma. Being gram-negative, it possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, influencing its pathogenic potential and resistance to certain antibiotics. Vibrio furnissii is often found in marine environments, commonly associated with the gastrointestinal tract of various aquatic organisms, particularly fish and shellfish. Its ability to thrive in such diverse habitats speaks to its ecological versatility and adaptability. As a chemoheterotroph, V. furnissii derives its energy from organic compounds, which it metabolizes for growth and reproduction. This characteristic is vital for its survival in nutrient-rich aquatic environments, where it plays a role in the nutrient cycle. The facultative anaerobe trait allows V. furnissii to survive in both aerobic and anaerobic conditions, providing it with a competitive edge in unstable habitats. In oxygen-rich waters, it can utilize aerobic respiration, while in low-oxygen environments, it can switch to fermentation or anaerobic respiration. This flexibility enhances its ability to colonize various niches within its ecosystem. In addition to its ecological role, Vibrio furnissii has garnered attention due to its potential pathogenicity; it can cause gastrointestinal infections in humans when ingested through contaminated seafood. It is also known for its association with warmer waters, which may affect its prevalence as global temperatures rise. This relationship presents an intriguing intersection of environmental science, marine biology, and public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio furnissii Positive Facultative anaerobe Marine Human 29494 NZ_CP040991.1 Bac0001042 Vibrio navarrensis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio navarrensis aerobic 29495 JMCG00000000.1 Bac0001043 Vibrio splendidus str. DSM 19640 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 PDMZ00000000.1 Bac0001044 Vibrio splendidus Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 MCWA00000000.1 Bac0001045 Vibrio splendidus str. ORI231 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 MSCG00000000.1 Bac0001046 Vibrio tubiashii str. T33 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tubiashii 29498 JRWQ00000000.1 Bac0001047 Leptospira meyeri str. DSM 21537 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira meyeri 29508 SORO00000000.1 Bac0001048 Porphyromonas circumdentaria Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas circumdentaria anaerobic 29524 FUXE00000000.1 Bac0001049 Chitinophaga arvensicola Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga arvensicola 29529 FOJG00000000.1 Bac0001050 Flavobacterium saccharophilum "Flavobacterium saccharophilum is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This microbe is part of the Flavobacteriaceae family, known for its diverse metabolic capabilities, particularly in the degradation of complex carbohydrates. The Gram-negative nature of F. saccharophilum indicates the presence of a thin peptidoglycan layer and an outer membrane, which may play a role in its interactions with the environment and other microorganisms.↵↵The rod shape of F. saccharophilum contributes to its motility and surface attachment, which are vital for colonization and nutrient acquisition. As an aerobic organism, it relies on oxygen for its metabolic processes, suggesting a potential preference for environments where oxygen is readily available. This trait aligns with its capacity to break down polysaccharides, which are often found in organic-rich environments.↵↵The optimal temperature of 25.0°C indicates that F. saccharophilum is well-adapted to moderate climates, such as those encountered in soil or freshwater ecosystems. Given its carbohydrate-degrading abilities, F. saccharophilum likely plays a significant role in nutrient cycling within its habitat, contributing to the breakdown of organic matter and the recycling of essential elements. This positions it as an important player in the microbial community dynamics, particularly in environments where organic carbon is abundant." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium saccharophilum Gram-negative rod motile aerobic 25 mesophilic 29534 FRBY00000000.1 Bac0001051 Flavobacterium succinicans Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium succinicans 29536 FOUT00000000.1 Bac0001052 Flavobacterium succinicans str. DD5b Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium succinicans 29536 JMTM00000000.1 Bac0001053 Natrialba asiatica DSM 12278 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba asiatica 29540 AOIO00000000.1 Bac0001054 Methylophilus sp. Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylophilus Methylophilus sp. 29541 PERN00000000.1 Bac0001055 Syntrophotalea acetylenica Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea acetylenica 29542 NZ_CP015518.1 Bac0001056 Mycoplasmopsis bovirhinis str. GS01 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovirhinis 29553 NZ_CP024049.1 Bac0001057 Mycoplasmopsis bovirhinis Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovirhinis 29553 NZ_LR214972.1 Bac0001058 Mycoplasmopsis canis Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis canis 29555 NZ_LR215015.1 Bac0001059 Mycoplasmopsis gallinacea Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis gallinacea 29556 NZ_LR214950.1 Bac0001060 Mycoplasmopsis gallinarum str. Mgn_IPT Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis gallinarum 29557 LVLH00000000.1 Bac0001061 Metamycoplasma hyosynoviae str. NPL2 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hyosynoviae 29559 JFKK00000000.1 Bac0001062 Metamycoplasma hyosynoviae str. NPL4 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hyosynoviae 29559 JFKI00000000.1 Bac0001063 Metamycoplasma hyosynoviae str. NPL5 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hyosynoviae 29559 JFKM00000000.1 Bac0001064 Vreelandella subglaciescola Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella subglaciescola 29571 NZ_LT670847.1 Bac0001065 Janthinobacterium lividum str. UCD_MED1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium lividum 29581 VDGE00000000.1 Bac0001066 Janthinobacterium lividum Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium lividum 29581 UGJH00000000.1 Bac0001067 Bifidobacterium pseudolongum subsp. pseudolongum "Bifidobacterium pseudolongum subsp. pseudolongum is a Gram-positive, nonsporulating rod that typically forms pairs. This anaerobic microorganism is a chemoheterotroph, relying on organic compounds for energy, and is optimally active at a temperature of 37.0°C, which aligns with the typical conditions found within the host gut environment. ↵↵As a member of the Bifidobacterium genus, this subspecies plays a significant role in the gut microbiota of various hosts, contributing to the fermentation of dietary fibers and the production of beneficial short-chain fatty acids. The presence of Bifidobacterium pseudolongum subsp. pseudolongum in the gut may be associated with maintaining gut health, potentially influencing metabolic processes and immune responses.↵↵Furthermore, its rod shape and paired arrangement may facilitate interactions with other gut microbes, thereby contributing to the complex microbiological ecosystem that characterizes the gut. Understanding the specific roles of Bifidobacterium pseudolongum subsp. pseudolongum in gut health could provide insights into its potential as a probiotic or therapeutic agent for promoting microbiome balance and overall health in its host." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 31954 RYUN00000000.1 Bac0001068 Clavibacter sepedonicus "Clavibacter sepedonicus is a Gram-positive, rod-shaped bacterium that typically exhibits a cell arrangement consisting of pairs and singles. This microbe thrives optimally at a temperature of 25.0°C and is classified as an aerobe, requiring oxygen for growth. ↵↵The habitat of Clavibacter sepedonicus is diverse, indicating its adaptability to various environmental conditions. Its rod morphology and aerobic nature suggest that it may play a role in specific ecological niches where oxygen is readily available, allowing for unique interactions with other microorganisms and potential host organisms.↵↵Understanding the growth conditions and structural characteristics of Clavibacter sepedonicus can contribute to insights into its ecological roles, particularly in terrestrial environments where oxygen levels fluctuate. Its ability to thrive in varied habitats may also inform studies on microbial diversity and resilience in changing ecological landscapes." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter sepedonicus Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 31964 NC_010408.1 Bac0001069 Eggerthia catenaformis str. MAR1 "Eggerthia catenaformis str. MAR1 is a Gram-positive, anaerobic bacterium notable for its unique morphological and physiological characteristics. As a member of the genus Eggerthia, this strain is distinguished by its ability to thrive in an oxygen-depleted environment, a trait that is characteristic of many anaerobic microbes. The Gram-positive nature of E. catenaformis str. MAR1 indicates the presence of a thick peptidoglycan layer in its cell wall, which is typical for this group of bacteria and may contribute to its survival strategies in anaerobic conditions.↵↵The anaerobic lifestyle of E. catenaformis str. MAR1 suggests its potential role in various biochemical processes, particularly in the breakdown of complex organic materials in anaerobic ecosystems. Such environments include the gastrointestinal tracts of animals and sediments in aquatic systems, where anaerobes play a crucial role in nutrient cycling and organic matter decomposition. The ability of this strain to adapt to low-oxygen conditions may also offer insights into the metabolic pathways employed by anaerobic bacteria, enhancing our understanding of microbial ecology in extreme environments.↵↵Research on Eggerthia catenaformis str. MAR1 could elucidate its contributions to microbial communities and its potential applications in biotechnology, particularly in processes such as biogas production or bioremediation. Understanding the specific metabolic capabilities and environmental interactions of this strain may provide further insights into its ecological significance." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Eggerthia Eggerthia catenaformis Positive Anaerobe 31973 NCVR00000000.1 Bac0001070 Campylobacter jejuni subsp. jejuni str. 00-0949 "Campylobacter jejuni subsp. jejuni str. 00-0949 is a Gram-negative bacterium characterized by its distinctive spirilla shape and ability to form chains or exist as single cells. This microbe is a heterotroph, relying on organic compounds for energy, which enables it to thrive in various habitats. C. jejuni str. 00-0949 exhibits microaerophilic growth, indicating that it requires reduced levels of oxygen for optimal growth. Notably, it can tolerate temperatures as low as 0.0°C, suggesting a capacity for survival in cooler environments.↵↵The ability to form chains may facilitate its mobility and interaction with the surrounding environment, potentially influencing its ecological dynamics. The diverse habitats in which this strain can be found emphasize its adaptability and ecological versatility, allowing it to engage in various biological processes. Understanding the specific environmental conditions that favor the growth of Campylobacter jejuni subsp. jejuni str. 00-0949 could provide insights into its ecological role and potential interactions within microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 32022 NZ_CP010303.1 Bac0001071 Campylobacter jejuni subsp. jejuni "Campylobacter jejuni subsp. jejuni is a Gram-negative, spiral-shaped bacterium that typically exists as single cells or in chains. This microbe is a heterotroph, deriving its energy from organic compounds, and it thrives in a microaerophilic environment, indicating a preference for reduced oxygen levels. Notably, C. jejuni subsp. jejuni exhibits an optimal temperature for growth that is typically low, suggesting the potential for survival in cooler habitats.↵↵The diverse habitats of C. jejuni subsp. jejuni highlight its ecological versatility, allowing it to occupy various niches that may include both natural and anthropogenic environments. This adaptability is significant, as it may facilitate interactions with a range of other microorganisms and contribute to its survival under fluctuating environmental conditions. The presence of this bacterium in multiple habitats underscores its role in microbial communities and suggests potential involvement in nutrient cycling processes. Understanding the ecological dynamics of Campylobacter jejuni subsp. jejuni may provide insights into its interactions within microbial ecosystems, particularly in environments where microaerophilic conditions prevail." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 32022 PIAV00000000.1 Bac0001072 Paracidovorax konjaci Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax konjaci 32040 FOMQ00000000.1 Bac0001073 Synechococcus sp. WH 8020 "Synechococcus sp. WH 8020 is a coccoid cyanobacterium characterized by its spherical shape. This marine microbe is noted for its photosynthetic capabilities, utilizing sunlight to convert carbon dioxide and water into organic compounds, which contributes to its role in aquatic ecosystems. The presence of chlorophyll a and phycobilins enables this organism to effectively capture light energy, facilitating its growth in diverse light conditions.↵↵As a member of the cyanobacterial lineage, Synechococcus sp. WH 8020 plays a significant role in primary production within marine environments, contributing to the ocean's productivity and impacting carbon cycling. This species is particularly noteworthy for its potential adaptability to varying environmental conditions, which may enhance its resilience and ecological success in fluctuating habitats.↵↵Research on Synechococcus sp. WH 8020 can provide valuable insights into the mechanisms of photosynthesis and the ecological roles of cyanobacteria in marine food webs. Understanding how this microbe interacts with its environment can elucidate broader patterns of nutrient cycling and energy flow in oceanic systems, highlighting the importance of cyanobacteria in sustaining marine biodiversity and ecosystem health." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. WH 8020 Cocci 32052 NZ_CP011941.1 Bac0001074 Cutibacterium avidum "Cutibacterium avidum is a Gram-positive, rod-shaped bacterium that thrives in moderate temperatures, classified as a mesophilic organism. As a heterotroph, it derives its nutrition from organic compounds, making it dependent on other organisms for sustenance. This microbe is predominantly isolated from various human skin sites, including sebaceous (oil) glands, which is significant in understanding its role in the human microbiome. It is classified as an obligate anaerobe, meaning it primarily survives in environments devoid of oxygen. The Gram-positive nature of C. avidum relates to its thick peptidoglycan cell wall, which provides structural integrity and is crucial for its survival in the skin's diverse microenvironment. The rod shape of the bacterium aids in its mobility and attachment to skin surfaces, enhancing colonization. As a mesophile, it prefers temperatures around 30-37 degrees Celsius, the standard range found on human skin. This adaptability allows it to thrive in the unique microhabitats present on the body. Heterotrophic metabolism plays a vital role in its ecological niche, as it engages in the breakdown of lipids and fatty acids, particularly those secreted by the skin's sebaceous glands. This process contributes to the overall balance of skin microbiota and may influence skin conditions like acne.Research on Cutibacterium avidum has revealed its potential role in inflammation and the pathogenesis of acne vulgaris, shedding light on its interaction with the host immune response. Its ability to modulate the human skin environment underscores its significance in dermatological health and disease, making it a focal point of ongoing microbiological studies. Understanding its functions and interactions can lead to improved therapeutic strategies for skin disorders." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium avidum positive Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 33010 NOWI00000000.1 Bac0001075 Cutibacterium granulosum "Cutibacterium granulosum is a gram-positive, rod-shaped bacterium that thrives at human body temperature, classifying it as a mesophile. As a chemoheterotroph, it derives energy from organic compounds and requires a host for growth, primarily residing in various niches on the human body. This microbe is predominantly found on the skin, particularly in sebaceous glands, and can also inhabit mucosal surfaces and hair follicles. Being a facultative anaerobe, C. granulosum can grow in both the presence and absence of oxygen, although it prefers environments rich in nutrients and organic material, allowing it to adapt to the diverse microenvironments within the human body. The gram-positive nature of this organism indicates a thick peptidoglycan layer, which provides structural support and protection, influencing its interaction with the human immune system. C. granulosum plays a dual role in human health; while it is a normal component of the skin microbiota and contributes to maintaining skin health by preventing the colonization of pathogenic bacteria, it can also be implicated in certain skin conditions, such as acne. This association is linked to its ability to produce lipases, which break down sebum into free fatty acids, leading to inflammation.Additionally, the metabolism of C. granulosum is involved in the degradation of skin lipids, which can have ramifications for the skin's antimicrobial properties. Its relatively stable presence on skin highlights its importance in the delicate balance of the human microbiome, exemplifying how microorganisms can have complex relationships with their hosts." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium granulosum positive No 1 anaerobic Chemoheterotroph Mesophilic Host epidermis Nonsporulating 33011 QFOG00000000.1 Bac0001076 Clavibacter michiganensis subsp. insidiosus str. R1-1 "Clavibacter michiganensis subsp. insidiosus str. R1-1 is a Gram-positive, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This microbe exhibits an aerobic metabolism, requiring oxygen for its growth and survival. Optimal growth conditions for strain R1-1 are observed at a temperature of 25.0°C, suggesting a preference for moderate environmental temperatures.↵↵The habitat of C. michiganensis subsp. insidiosus str. R1-1 is noted to be diverse, indicating its adaptability to various ecological niches. This adaptability may play a significant role in its interactions within microbial communities and its potential influence on plant health or soil ecosystems. Understanding the ecological roles of this bacterium could provide insights into its contributions to nutrient cycling or its interactions with other microbial species in its habitat. Further investigation into its specific ecological functions is warranted to elucidate its potential impacts on the environment." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 33014 NZ_CP011045.1 Bac0001077 Staphylococcus saccharolyticus "Staphylococcus saccharolyticus is a cocci-shaped bacterium that thrives in anaerobic environments, primarily inhabiting the skin of various hosts. This microbe exhibits a unique metabolic capability, as it is able to ferment carbohydrates, which may contribute to its survival in the skin microbiome where it can utilize available sugars. ↵↵As an anaerobic organism, S. saccharolyticus is adapted to environments with limited oxygen availability, suggesting that it may play a role in the complex interactions within the skin's microbiota, particularly in areas where oxygen levels are lower. The presence of this bacterium in the skin indicates its potential involvement in maintaining the balance of microbial communities, possibly influencing the overall health of the skin ecosystem.↵↵Additionally, S. saccharolyticus's ability to ferment carbohydrates rather than relying on aerobic respiration may offer insights into its ecological niche, allowing it to occupy specific microenvironments on the skin that are less favorable to oxygen-dependent microorganisms. This adaptability highlights the diversity of metabolic strategies employed by bacteria in the skin microbiome and underscores the importance of anaerobic bacteria in skin health and homeostasis." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pasteuri Cocci anaerobic skin 33028 RXWW00000000.1 Bac0001078 Peptoniphilus indolicus "Peptoniphilus indolicus is a Gram-positive, coccoid-shaped bacterium that thrives in a temperature range of 30-40°C, falling under the mesophilic category. This microbe is a heterotroph, utilizing organic compounds as its energy source, and relies on fermentation as its primary method of energy production. Specifically, it obtains energy by breaking down amino acids, peptides, and other nitrogenous compounds. This microbe is commonly found in various body sites across different species, including the oral cavity, skin, and gastrointestinal tract. Its ability to adapt to these diverse environments is likely facilitated by its robust capacity for fermentative metabolism, which allows it to thrive in the presence of organic matter. P. indolicus is an obligate anaerobe, meaning it requires a lack of oxygen to survive and grow. This is likely an adaptation to its typical environments, where oxygen levels may be limited. In its anaerobic state, the microbe produces a range of metabolic products, including hydrogen gas, carbon dioxide, and various organic compounds. In its natural habitats, P. indolicus plays a significant role in degrading complex organic matter, breaking down proteins and peptides into simpler compounds. This process contributes to the recycling of essential nutrients and the decomposition of organic waste. Furthermore, research has shown that P. indolicus possesses a unique ability to produce indole, a compound with potential antimicrobial properties. This unique characteristic has sparked interest in the microbe's potential applications in the development of novel antibacterial agents. Overall, Peptoniphilus indolicus is a fascinating microbe that has adapted to thrive in a wide range of environments, playing a significant role in the recycling of organic matter and potentially offering new avenues for the development of antimicrobial therapies." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus indolicus Positive Anaerobe 33030 UGTH00000000.1 Bac0001079 Parvimonas micra str. KCOM 1535 (=ChDC B708) "Parvimonas micra strain KCOM 1535, also designated as ChDC B708, is a Gram-positive coccus that thrives optimally at 37.0°C and functions as a chemoheterotroph. This nonsporulating anaerobic microbe is capable of utilizing a variety of organic compounds as energy sources, reflecting its adaptability to diverse habitats. ↵↵The coccus shape of P. micra contributes to its unique morphological characteristics, which can be important for identification in microbiological studies. As an anaerobe, this organism requires an environment devoid of oxygen to survive and grow, which is indicative of its ecological niche in anaerobic environments such as the human oral cavity and gastrointestinal tract. ↵↵The ability of P. micra to thrive in multiple habitats suggests a versatile adaptation strategy, possibly allowing it to participate in various microbial communities. This adaptability may play a role in its interactions with other microbial species, contributing to the complex dynamics observed in anaerobic ecosystems. Understanding the role of P. micra in these environments could provide insights into its potential contributions to microbial diversity and functionality in anaerobic niches." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Parvimonas micra Positive Coccus No 1 Anaerobe 37 Chemoheterotroph Multiple Nonsporulating 33033 NZ_CP009761.1 Bac0001080 Anaerococcus tetradius str. MJR8151 "Anaerococcus tetradius strain MJR8151 is a Gram-positive coccus that inhabits the vaginal microbiota. This microbe exhibits a spherical shape, which is characteristic of many members within the genus Anaerococcus. As a member of the vaginal microbiome, A. tetradius may play a role in maintaining the local ecosystem through its interactions with other microbial species, although the specific contributions of this strain to vaginal health or dysbiosis have not been elucidated. ↵↵The presence of A. tetradius in the vaginal environment suggests that it may contribute to the complex interplay of microorganisms that can influence both local and systemic health outcomes. Understanding the specific ecological roles and potential functions of A. tetradius within the vagina could provide insights into its significance in maintaining a balanced microbiome and its potential implications for women's health. Further research is warranted to explore its interactions with other vaginal microbes and its overall impact on the host." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus tetradius Positive Cocci vagina 33036 LRPM00000000.1 Bac0001081 Mediterraneibacter gnavus "Mediterraneibacter gnavus is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, particularly within the intestinal microflora of animals. This microbe has an optimal growth temperature of 37.0°C, aligning with the typical physiological conditions found in the gastrointestinal tract of its hosts. As a chemoheterotroph, M. gnavus derives its energy from organic compounds, reflecting its adaptation to a nutrient-rich environment provided by the complex substrates present in the intestines.↵↵The presence of M. gnavus in the animal gut microbiome suggests a potential role in digestion and nutrient absorption, as well as in maintaining the overall health of the host. Its anaerobic nature points to a possible specialization in fermentative metabolic pathways, likely contributing to the breakdown of dietary fibers and other complex carbohydrates that are otherwise indigestible. Furthermore, the coccoid morphology of M. gnavus may facilitate its survival and colonization within the densely populated microbial communities of the gut.↵↵Given its association with animal intestinal microflora, M. gnavus may also participate in interspecies interactions, influencing the composition and stability of the gut microbiome. This could have implications for understanding microbial ecology in relation to host health and disease resilience, highlighting the importance of such bacteria in the intricate balance of gastrointestinal ecosystems." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 NIHU00000000.1 Bac0001082 Mediterraneibacter torques "Mediterraneibacter torques is a Gram-positive, anaerobic coccus that represents a distinct member of the microbial community. As a Gram-positive organism, M. torques possesses a thick peptidoglycan layer in its cell wall, which is characteristic of this classification and contributes to its structural integrity. The coccoid shape of M. torques suggests a potential for forming clusters or chains, a trait commonly observed in many members of the Firmicutes phylum.↵↵This microbe thrives in environments devoid of oxygen, indicating its adaptation to anaerobic conditions. Such an oxygen requirement suggests that M. torques may play a role in specific ecological niches, such as in the gastrointestinal tracts of certain animals or in environments where organic matter is decomposed anaerobically. The metabolic pathways utilized by M. torques in these anaerobic settings could involve fermentation processes, contributing to the breakdown of complex carbohydrates and potentially influencing the local microbiome dynamics.↵↵Research on M. torques may provide insights into the interactions between anaerobic bacteria and their habitats, especially regarding their roles in nutrient cycling and their influence on the health of anaerobic microbial communities. Understanding this microbe could shed light on the broader ecological functions of anaerobic cocci within their respective environments." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter torques Positive Cocci Anaerobe 33039 CZBJ00000000.1 Bac0001083 Streptococcus milleri Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus milleri 33040 NZ_LR134288.1 Bac0001084 Coprococcus eutactus "Coprococcus eutactus is a Gram-positive, oval-shaped microbe that thrives in a thermophilic environment, with an optimal temperature range of 37-43°C, placing it in the moderate thermophile category. This microbe is a facultative anaerobe, meaning it can grow in the presence or absence of oxygen, and its metabolism is heterotrophic, relying on the consumption of organic compounds as its energy source. Specifically, it utilizes a mix of carbohydrates, peptides, and lipids as its energy sources, producing energy through the process of fermentation, which involves the breakdown of organic compounds in the absence of oxygen. As a generalist, Coprococcus eutactus can be found inhabiting multiple body sites across all human species, including the oral cavity, gastrointestinal tract, and skin, making it a common commensal microbe. Its ability to thrive in a variety of environments has allowed it to establish itself as a resident in the human microbiome. In terms of oxygen preference, Coprococcus eutactus is classified as a facultative anaerobe, capable of growing in both oxic and anoxic environments. This flexibility allows it to adapt to the dynamic conditions present in the human body, where oxygen levels can fluctuate significantly. Interestingly, the genus Coprococcus is closely related to the genus Clostridium, which is notorious for its involvement in anaerobic infections and food poisoning. Despite this, Coprococcus eutactus is generally considered harmless and plays a beneficial role in the human microbiome by contributing to the breakdown of complex nutrients and influencing the development of the gut-associated lymphoid tissue. Further research is needed to fully understand the role of this microbe in human health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus eutactus Positive Cocci Anaerobe 33043 CYYJ00000000.1 Bac0001085 Bartonella grahamii "Bartonella grahamii is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 35.0°C. This microbe is primarily host-associated, suggesting a close relationship with its hosts, likely relying on them for survival and proliferation. The host-associated habitat indicates that B. grahamii may inhabit specific niches within its hosts, although the precise ecological roles and interactions remain to be fully elucidated.↵↵As a member of the Bartonella genus, B. grahamii may exhibit unique adaptations that facilitate its persistence within host organisms. The aerobic nature of this bacterium suggests that it may play a role in metabolic processes that require oxygen, potentially influencing host microbiota dynamics. The specific temperature preference indicates that B. grahamii is adapted to the physiological conditions of its hosts, which may include mammals, although further research is needed to clarify its host range and ecological interactions.↵↵Understanding the physiology and habitat of Bartonella grahamii can provide insights into the broader ecological roles of Bartonella species and their potential influence on host health and disease dynamics. By investigating these relationships, researchers can gain a deeper understanding of how such microbes contribute to the complex interplay between host organisms and their associated microbiomes." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella grahamii Negative Rod Yes 1 2 Aerobic 35 Mesophilic HostAssociated Symbiotic 33045 UFTD00000000.1 Bac0001086 Sphingopyxis macrogoltabida Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis macrogoltabida 33050 QFPJ00000000.1 Bac0001087 Sphingopyxis macrogoltabida str. 203 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis macrogoltabida 33050 NZ_CP009430.1 Bac0001088 Sphingopyxis macrogoltabida str. EY-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis macrogoltabida 33050 NZ_CP012702.1 Bac0001089 Sphingomonas sanguinis str. NS319 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sanguinis 33051 LDTD00000000.1 Bac0001090 Sphingomonas sanguinis str. SB4 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sanguinis 33051 LDTE00000000.1 Bac0001091 Neisseria perflava Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria perflava 33053 NZ_CP136962.1 Bac0001092 Acidithiobacillus caldus str. DX "Acidithiobacillus caldus str. DX is a Gram-negative, rod-shaped bacterium that functions as a chemolithotroph, deriving energy from inorganic compounds. This microbe is nonsporulating and exhibits optimal growth at a temperature of 30.0°C. It is strictly aerobic, requiring oxygen for its metabolic processes. ↵↵A. caldus str. DX is found in diverse habitats, which may include extreme environments such as acidic mine drainage or geothermal sites, where it plays a role in biogeochemical cycles. Its ability to oxidize sulfur compounds positions it as an important player in sulfur cycling, potentially contributing to the formation of acid mine drainage, a phenomenon that can impact surrounding ecosystems.↵↵Understanding the traits of A. caldus str. DX provides insights into the adaptability and ecological significance of chemolithotrophic bacteria in harsh environments. The organism's metabolic capabilities allow it to thrive in conditions where organic carbon is scarce, underscoring the importance of such microbes in sustaining microbial communities in extreme habitats." Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus caldus Negative Rod No 1 Aerobic 30 Chemolithotroph Thermophilic Multiple Nonsporulating 33059 LZYE00000000.1 Bac0001093 Yersinia mollaretii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia mollaretii 33060 CTKJ00000000.1 Bac0001094 Pseudomonas viridiflava str. CFBP13507 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viridiflava 33069 QFZY00000000.1 Bac0001095 Pseudomonas viridiflava Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viridiflava 33069 RBRK00000000.1 Bac0001096 Pseudomonas viridiflava str. CFBP13515 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viridiflava 33069 QGAG00000000.1 Bac0001097 Pseudomonas viridiflava str. ICMP 8820 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viridiflava 33069 LKCA00000000.1 Bac0001098 Zymobacter palmae str. T109 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Zymobacter Zymobacter palmae rhizomes 33074 NZ_AP018934.1 Bac0001099 Rathayibacter tritici Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter tritici 33888 PSUO00000000.1 Bac0001100 Brevibacterium casei "Brevibacterium casei is a Gram-positive, rod-shaped bacterium classified as a facultative anaerobe that thrives at mesophilic temperatures, typically around 30-37°C, and is considered a chemoheterotroph. This microorganism is primarily found in various body sites and environments, including the skin, mouth, and intestines of humans and animals, as well as in dairy products, particularly cheeses. As a Gram-positive bacterium, Brevibacterium casei possesses a thick peptidoglycan layer in its cell wall, which gives it structural integrity and enables it to retain the crystal violet dye used in Gram staining. Its rod-like shape, or bacillus form, allows for versatile interactions with its environment. The mesophilic temperature preference indicates its optimal growth range aligns with the temperature of the human body, facilitating its persistence in human-associated ecosystems. Being a facultative anaerobe, B. casei can grow in the presence or absence of oxygen, which allows it to colonize diverse environments where oxygen levels may fluctuate. As a chemoheterotroph, Brevibacterium casei metabolizes organic compounds for energy and carbon, utilizing carbohydrates, amino acids, and fatty acids found in its surroundings. This metabolic flexibility contributes to its role in food fermentation, especially in cheese production, where it helps develop flavor and texture.Brevibacterium casei is also notable for its association with human skin, where it contributes to the characteristic smell of foot odor due to the production of volatile compounds during protein fermentation. Its presence and activities in both food production and human microbiomes highlight its ecological significance and potential applications in biotechnology and health." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei Positive Aerobe 33889 NCWY00000000.1 Bac0001101 Brevibacterium casei str. M40 "**Brevibacterium casei str. M40** is a Gram-positive, aerobic bacterium characterized by its distinctive morphology and metabolic capabilities. As a member of the genus *Brevibacterium*, this strain exhibits a rod-shaped structure typical of the group, which is known for its role in various fermentation processes. The aerobic nature of *B. casei str. M40* suggests that it requires oxygen for growth and energy production, positioning it amongst microorganisms that thrive in oxygen-rich environments.↵↵This strain demonstrates the potential for use in food biotechnology, particularly in the fermentation of dairy products, where *Brevibacterium* species are often utilized for their flavor-producing abilities. The positive Gram stain indicates the presence of a thick peptidoglycan layer in the bacterial cell wall, a feature that is characteristic of many beneficial bacteria used in food applications.↵↵The ability of *B. casei str. M40* to metabolize substrates in aerobic conditions may also contribute to its utilization in biotechnological applications beyond food, potentially including bioconversion processes or environmental bioremediation efforts. Understanding the metabolic pathways and ecological roles of this strain could reveal insights into its interactions within microbial communities, particularly in environments where aerobic conditions prevail. Thus, *Brevibacterium casei str. M40* exemplifies the diverse applications and ecological significance of aerobic, Gram-positive bacteria in both natural and industrial ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei Positive Aerobe 33889 LQQR00000000.1 Bac0001102 Mycobacterium interjectum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium interjectum microaerophile 33895 LQPB00000000.1 Bac0001103 Streptomyces avermitilis "Streptomyces avermitilis is a gram-positive, filamentous bacterium characterized by its rod shape, mesophilic temperature preference, heterotrophic metabolism, and obligate aerobic nature. As a member of the Streptomyces genus, it exhibits a complex life cycle and forms branched filaments resembling fungal hyphae, which further distinguishes it from other bacterial species. The gram-positive nature of S. avermitilis is indicative of its thick peptidoglycan cell wall, which is vital for its structural integrity and resilience in various environments. Being mesophilic, S. avermitilis thrives optimally at moderate temperatures, typically between 25°C and 37°C, making it well-suited for life in soil and decaying organic matter. As a heterotroph, it derives energy and carbon from organic compounds, efficiently breaking down complex substrates and playing a crucial role in the carbon cycle. Its obligate aerobic classification necessitates the presence of oxygen for respiration, which is essential for its metabolic processes and energy production. S. avermitilis is noteworthy for its ability to produce a variety of bioactive compounds, most famously avermectins, which are used as antiparasitic agents in veterinary medicine and agriculture. The discovery of these compounds has revolutionized parasite control in both livestock and crops, leading to significant economic benefits. Additionally, this bacterium has a rich history in the field of biotechnology, as it has been studied extensively for its potential in natural product discovery, contributing to our understanding of microbial ecology and the development of new therapeutic agents. Its ability to decompose complex organic materials also highlights its ecological importance in nutrient recycling and soil health." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces avermitilis Positive Tailed Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Sporulating 33903 BJHX00000000.1 Bac0001104 Bifidobacterium thermophilum "Bifidobacterium thermophilum is a gram-positive, rod-shaped bacterium classified as a thermophilic heterotroph and an obligate anaerobe, primarily thriving in warm environments such as the intestines of humans and other mammals, as well as in dairy products. This species is part of the Bifidobacterium genus, known for its beneficial probiotic properties.As a gram-positive organism, Bifidobacterium thermophilum has a thick peptidoglycan layer in its cell wall, which plays a crucial role in its structural integrity and resistance to environmental stresses. Its rod shape facilitates colonization and interaction with the gut microbiota, allowing for efficient nutrient absorption and metabolic processes. Being thermophilic, it is well adapted to elevated temperatures, typically thriving around 37-45°C, which corresponds to the body temperature of many mammals, promoting its growth and metabolic activities in warm niches. As a heterotroph, Bifidobacterium thermophilum relies on organic compounds for energy, utilizing carbohydrates found in dietary fibers and human milk oligosaccharides. This capability is vital for its survival in the gut, where it ferments these substrates and produces beneficial short-chain fatty acids (SCFAs), such as acetate and lactate, contributing to gut health and homeostasis. As an obligate anaerobe, it thrives in environments devoid of oxygen, relying on fermentation pathways to metabolize substrates, which is common in the anaerobic conditions of the human intestines. Bifidobacterium thermophilum has garnered attention for its potential health benefits, including modulation of the gut microbiome, enhancement of immune function, and prevention of gastrointestinal disorders, such as diarrhea and constipation. Additionally, its use in functional foods, such as yogurt, highlights its significance in promoting digestive health and overall well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium thermophilum Positive Anaerobe 33905 PCGY00000000.1 Bac0001105 Mycoplasmopsis agassizii Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis agassizii 33922 FWXE00000000.1 Bac0001106 Anoxybacillus flavithermus str. KU2-6_11 "Anoxybacillus flavithermus str. KU2-6_11 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to survive in harsh environmental conditions. This microorganism thrives optimally at a temperature of 60.0°C, indicating a preference for thermophilic habitats, which are characterized by elevated temperatures. As a facultative aerobe, Anoxybacillus flavithermus str. KU2-6_11 can utilize both aerobic and anaerobic metabolic pathways, enabling it to adapt to varying oxygen levels in its specialized habitat.↵↵The ability to sporulate suggests that this strain may play a role in nutrient cycling within its environment, particularly in high-temperature ecosystems where other organisms might not survive. Its thermophilic nature is likely an adaptation to specific ecological niches, such as hot springs or geothermal areas, where it may contribute to the degradation of organic matter or the transformation of nutrients in extreme conditions. The unique combination of traits associated with Anoxybacillus flavithermus str. KU2-6_11 highlights its potential importance in biotechnological applications, particularly those that exploit high-temperature processes, such as industrial fermentation or bioremediation in thermally challenging environments." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus flavithermus Positive Rod Yes 1 1 Facultative aerobe 60 Thermophilic Specialized Free living Sporulating 33934 PEDM00000000.1 Bac0001107 Anoxybacillus flavithermus "Anoxybacillus flavithermus is a Gram-positive, rod-shaped bacterium that is characterized by its ability to sporulate and thrive at an optimal temperature of 60.0°C. This organism is classified as a facultative aerobe, allowing it to adapt to varying oxygen levels in its specialized habitat. ↵↵The ability to form spores is a significant trait that enables A. flavithermus to survive in extreme conditions, including high temperatures that would be inhospitable to many other microorganisms. Its optimal growth temperature suggests a preference for thermophilic environments, which are often found in geothermal areas, compost heaps, or other heated substrates where organic matter is decomposed.↵↵The facultative aerobic nature of A. flavithermus indicates that it can utilize oxygen when available, but is capable of anaerobic respiration when needed, which enhances its adaptability in fluctuating environmental conditions. This versatility not only contributes to its survival but may also play a role in nutrient cycling within its specialized habitat.↵↵Given its thermal tolerance and sporulation capability, Anoxybacillus flavithermus may be of particular interest in biotechnological applications, such as the development of thermophilic enzymes for industrial processes. Understanding its ecological role could provide insights into microbial community dynamics in high-temperature environments, as well as potential applications in bioremediation or bioenergy production." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus flavithermus Positive Rod Yes 1 1 Facultative aerobe 60 Thermophilic Specialized Free living Sporulating 33934 LQYU00000000.1 Bac0001108 Lysinibacillus macroides str. DSM 54 "Lysinibacillus macroides str. DSM 54 is a Gram-positive, rod-shaped bacterium known for its spore-forming capabilities and aerobic metabolism. This microbe thrives optimally at a temperature of 29.0°C and is typically found in the rhizomes of various plants, suggesting a potential role in plant-associated microbial communities. ↵↵As a spore-forming organism, L. macroides has the ability to withstand adverse environmental conditions, which may enhance its survival and persistence in the rhizosphere. Its aerobic nature indicates that it requires oxygen for growth, which aligns with its habitat in the oxygen-rich environments found within plant root systems. ↵↵The presence of Lysinibacillus macroides in rhizomes highlights its potential significance in plant health and soil ecology, possibly contributing to nutrient cycling or influencing plant growth through interactions with root systems. Further research into its specific roles in these environments may uncover important aspects of its ecological functions and potential applications in agriculture or soil management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus macroides Gram-negative / Gram-positive rod aerobic 29 mesophilic rhizomes spore-forming 33935 LGCI00000000.1 Bac0001109 Aeribacillus pallidus str. 8m3 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Aeribacillus Aeribacillus pallidus 33936 LWBR00000000.1 Bac0001110 Aeribacillus pallidus str. KCTC 3564 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Aeribacillus Aeribacillus pallidus 33936 NZ_CP017703.1 Bac0001111 Geobacillus thermoleovorans "Geobacillus thermoleovorans is a rod-shaped bacterium that thrives in extreme environments, specifically geothermal springs and oil waste. This thermophilic microorganism is notable for its ability to grow at elevated temperatures, which allows it to inhabit niches that are typically inhospitable to many other organisms. Its adaptability to high-temperature conditions is a key characteristic that may contribute to its metabolic versatility.↵↵The presence of G. thermoleovorans in geothermal springs indicates its potential role in biogeochemical cycles, particularly in environments where organic matter is subjected to thermal degradation. The ability of this bacterium to survive and proliferate in oil waste suggests it may possess unique enzymatic pathways that facilitate the degradation of hydrocarbons, an advantageous trait for bioremediation efforts in polluted habitats.↵↵Moreover, the ecological significance of G. thermoleovorans extends to its potential applications in biotechnology, particularly in processes that require high-temperature conditions, such as the production of thermostable enzymes for industrial applications. Its presence in geothermal ecosystems highlights the importance of extremophiles in understanding microbial diversity and function in extreme habitats. Collectively, these traits underscore the adaptability and ecological relevance of Geobacillus thermoleovorans in both natural and anthropogenic environments." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus thermoleovorans Rod thermophilic geothermal springs; oil waste 33941 NZ_CP027303.2 Bac0001112 Enterococcus avium "Enterococcus avium is a Gram-positive, coccus-shaped bacterium that thrives in a temperature range of 25-45°C, placing it in the mesophilic temperature preference category. This microbe is a heterotroph, meaning it requires organic compounds as a source of energy, and utilizes a respiratory process to produce energy through the breakdown of sugars and other carbon-rich molecules. As a facultative anaerobe, Enterococcus avium can grow and thrive in the presence or absence of oxygen. This adaptability allows it to colonize a wide range of host species and body sites, including the gastrointestinal tract, respiratory tract, skin, and urinary tract of mammals, as well as the environment. The Gram-positive staining of Enterococcus avium indicates that its cell wall contains a thick peptidoglycan layer, which is responsible for its Gram-positive reaction. The coccus shape of the bacteria, characterized by their spherical or oval morphology, allows them to stick together and form aggregates, which can contribute to their ability to adhere to host tissues and evade the immune system. Enterococcus avium is commonly found in soil, water, and animal feces, and has been linked to a range of clinical infections, including endocarditis, urinary tract infections, and septicemia. One notable characteristic of Enterococcus avium is its ability to form biofilms, complex communities of microorganisms that adhere to surfaces and are protected by a matrix of extracellular polymeric substances. This ability allows the bacteria to persist on host tissues and in medical devices, making them difficult to eradicate with antibiotic treatment." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus avium Positive Cocci Facultative anaerobe intestines 33945 NBSM00000000.1 Bac0001113 Lactobacillus johnsonii "Lactobacillus johnsonii is a Gram-positive, rod-shaped bacterium that thrives in a temperature range of mesophilic to thermophilic, typically between 25°C to 45°C, categorizing it as a moderate-temperature microbe. As a chemoheterotroph, it obtains its energy by breaking down organic compounds and utilizing them as its primary source of nutrition. This process involves the production of ATP through fermentation, specifically lactic acid fermentation, which is a common mechanism employed by many Lactobacillus species. L. johnsonii is widely distributed across the human body, including the mouth, gut, and genitourinary tract. It is also found in various environments, such as soil, plants, and animals. This microbe is an obligate aerobe, requiring oxygen to survive and propagate. However, it can tolerate low oxygen levels and is often found in microaerophilic environments, such as the human gut, where oxygen levels are relatively low. L. johnsonii plays a crucial role in maintaining gut health by competing with pathogenic bacteria for nutrients and space, producing antimicrobial compounds, and influencing the immune system. It is also used as a probiotic in various applications, enhancing the balance of the gut microbiome and alleviating symptoms associated with irritable bowel syndrome (IBS). Furthermore, L. johnsonii has been implicated in the development of dental caries, as it can convert dietary sugars into lactic acid, contributing to tooth decay. Additionally, L. johnsonii has been explored as a potential therapeutic agent, demonstrating antimicrobial and anti-inflammatory properties. Research has also focused on its potential application in the development of probiotic-based products for animal feed and human nutrition. Overall, Lactobacillus johnsonii is a fascinating microbe that has garnered significant attention due to its adaptability, widespread distribution, and multifaceted role in maintaining human health and disease prevention." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains Non-pathogenic 33959 NIBB00000000.1 Bac0001114 Lactobacillus johnsonii str. ZLJ010 "Lactobacillus johnsonii str. ZLJ010 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic growth. This strain thrives optimally at a temperature of 25.0°C and is associated with host environments. As a member of the Lactobacillus genus, it is likely involved in various fermentation processes and may play a role in maintaining host health through its metabolic activities.↵↵The facultative anaerobic nature of L. johnsonii str. ZLJ010 allows it to adapt to varying oxygen levels within its host, potentially enabling it to colonize different niches in the gastrointestinal tract or other associated tissues. The chain arrangement of cells may facilitate interactions with the host environment, contributing to its ecological success.↵↵Given its habitat and characteristics, L. johnsonii str. ZLJ010 may be involved in the modulation of host immune responses or contribute to the maintenance of microbiota balance. The adaptability of this strain to host-associated environments highlights its potential significance in symbiotic relationships, particularly in the context of gut health and fermentation processes. Further research may elucidate its specific roles and benefits within microbial communities and its potential applications in probiotic development." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains Non-pathogenic 33959 NZ_CP032680.1 Bac0001115 Lentilactobacillus kefiri "Lentilactobacillus kefiri is a Gram-positive, rod-shaped bacterium primarily associated with the fermentation of kefir, a traditional fermented dairy product. This microbe plays a significant role in the development of the characteristic flavor and texture of kefir, contributing to its unique sensory properties. As a member of the lactic acid bacteria (LAB), Lentilactobacillus kefiri is involved in the conversion of lactose into lactic acid, which not only preserves the kefir but also enhances its nutritional profile by lowering pH and inhibiting the growth of spoilage organisms.↵↵This bacterium thrives in the complex microbial community found within kefir grains, which consist of a symbiotic matrix of bacteria and yeasts. The interactions among these microbes are essential for the fermentation process, leading to the production of various metabolites, including organic acids, vitamins, and bioactive compounds. The presence of Lentilactobacillus kefiri in kefir suggests its potential in promoting gut health and influencing the gut microbiome, although further research is required to fully elucidate its probiotic properties.↵↵An intriguing aspect of Lentilactobacillus kefiri is its adaptation to the specific environmental conditions present in kefir, such as the varied pH and the presence of other microorganisms. This adaptability may provide insights into the mechanisms of microbial synergy and competition in fermented foods, emphasizing the ecological importance of this bacterium in traditional fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus kefiri positive Rod kefir 33962 NCWS00000000.1 Bac0001116 Leuconostoc mesenteroides subsp. mesenteroides "Leuconostoc mesenteroides subsp. mesenteroides is a Gram-positive bacterium characterized by its cocci shape and variable cellular arrangement, which can be observed as singles, chains, or pairs. This organism thrives optimally at a temperature of 20.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. ↵↵L. mesenteroides subsp. mesenteroides is commonly found in diverse habitats, suggesting its ecological versatility. It plays a significant role in various fermentation processes, particularly in the production of foods such as sauerkraut and kimchi, where it contributes to the characteristic flavor and texture of these products. The ability of this microbe to grow in both aerobic and anaerobic conditions enhances its survival and functionality in multiple fermentation environments. ↵↵Importantly, L. mesenteroides subsp. mesenteroides is also known for its potential in biopreservation, as it can produce bacteriocins that inhibit the growth of spoilage organisms and pathogens. This trait may provide insights into its ecological niche, reflecting an evolutionary adaptation that supports its persistence in competitive environments. Thus, its presence in various fermentation systems not only illustrates its metabolic flexibility but also underscores its importance in food microbiology and preservation strategies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc mesenteroides Positive Cocci No 1 1 Facultative anaerobe 20 Mesophilic Multiple Free living Singles - Chains - Pairs 33967 NZ_CP020732.1 Bac0001117 Leuconostoc pseudomesenteroides Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc pseudomesenteroides 33968 MPLS00000000.1 Bac0001118 Melissococcus plutonius "Melissococcus plutonius is a Gram-positive, rod-shaped microbe that thrives in a temperature range of 25-40°C, falling under the category of mesophilic microbes. This bacterium is a heterotroph, obtaining its energy by breaking down organic compounds, and its metabolic processes involve fermentation. Specifically, M. plutonius utilizes a combination of glycolysis and pyruvate fermentation to produce energy. This microbe is found in various body sites across multiple species, including the gastrointestinal tract, skin, and respiratory passages. Despite its widespread distribution, M. plutonius has a distinct preference for aerobic environments, classified as an obligate aerobe. This means that it requires a steady supply of oxygen to survive and grow, making it sensitive to even minor changes in oxygen levels. In terms of its physiology, M. plutonius exhibits a unique ability to utilize a wide range of substrates for energy production. It can metabolize simple sugars, amino acids, and other organic compounds, allowing it to adapt to different environments and ecological niches. One of the most notable aspects of M. plutonius is its ability to form biofilms, complex communities of microorganisms attached to surfaces. This property allows it to withstand environmental stresses and antibiotic treatments, making it a formidable pathogen. Furthermore, the bacterium's ability to produce volatile organic compounds (VOCs) has been linked to its role in fermentation processes and the development of secondary metabolites. Despite its widespread presence, Melissococcus plutonius is still a relatively understudied microbe, with many aspects of its biology and ecology yet to be fully understood. Further research into its metabolic processes, biofilm formation, and interactions with host organisms is necessary to fully comprehend the importance of this microbe in various ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Melissococcus Melissococcus plutonius positive Cocci No 1 Anaerobic 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 33970 NZ_AP018492.1 Bac0001119 Caryophanon latum str. DSM 14151 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Caryophanon Caryophanon latum 33977 MATO00000000.1 Bac0001120 Caryophanon tenue str. DSM 14152 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Caryophanon Caryophanon tenue 33978 MASJ00000000.1 Bac0001121 Rickettsia rhipicephali Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rhipicephali 33992 NZ_CP013134.1 Bac0001122 Komagataeibacter europaeus str. CECT 8546 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter europaeus 33995 LHUQ00000000.1 Bac0001123 Paracoccus thiocyanatus str. SST Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus thiocyanatus 34006 QFCQ00000000.1 Bac0001124 Paracoccus versutus str. DSM 582 "Paracoccus versutus str. DSM 582 is a coccoid-shaped bacterium that belongs to the genus Paracoccus, distinguished by its spherical morphology. This strain is notable for its resilience and versatility in various environmental conditions, which reflects the adaptability often observed within the Paracoccus genus. ↵↵Bacteria of this genus are typically Gram-negative, and while specific details regarding the Gram reaction of DSM 582 are not provided, the general characteristics of Paracoccus suggest a similar profile. Members of this genus are often found in diverse habitats, including soil, water, and as part of the microbiota associated with plants and animals, indicating their ecological significance. ↵↵The cocci shape of Paracoccus versutus str. DSM 582 suggests potential advantages in certain environments, such as enhanced surface area relative to volume, which may facilitate nutrient uptake and metabolic efficiency. This trait, combined with the organism's presumed ability to thrive in varying conditions, positions P. versutus as a potentially important player in biogeochemical cycles, particularly in nitrogen and carbon cycling processes. ↵↵Furthermore, the coccoid morphology may contribute to the microbe's survival strategies in competitive environments, enabling it to occupy ecological niches that require effective resource utilization. Overall, the traits of Paracoccus versutus str. DSM 582 reflect a complex interplay of morphology and ecological adaptability, which warrants further investigation to uncover its specific roles in microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus versutus Cocci 34007 QUMX00000000.1 Bac0001125 Paracoccus versutus str. DSM 17099 "Paracoccus versutus str. DSM 17099 is a coccoid bacterium characterized by its spherical shape. This strain belongs to the genus Paracoccus, which is recognized for its metabolic versatility and ability to thrive in diverse environments. Members of the Paracoccus genus are typically Gram-negative, and they are known to play significant roles in biogeochemical cycles, particularly in nitrogen and carbon cycling. ↵↵The metabolic capabilities of Paracoccus species often include the ability to utilize various organic compounds as carbon and energy sources, which may contribute to their adaptability in fluctuating environmental conditions. The cocci morphology of P. versutus str. DSM 17099 suggests a potential for forming aggregates or colonies, which could enhance nutrient acquisition and survival in competitive habitats.↵↵Although specific physiological traits such as temperature and pH tolerance or metabolic pathways for energy production are not detailed in the provided information, the genus Paracoccus is generally known for its facultative anaerobic respiration and versatility in electron acceptors. This adaptability may allow P. versutus str. DSM 17099 to occupy niches where oxygen levels vary, showcasing its ecological resilience.↵↵In summary, the shape and potential metabolic versatility of Paracoccus versutus str. DSM 17099 underscore its role in microbial communities, possibly contributing to nutrient cycling in various environments, ranging from soil to aquatic systems. Further studies could elucidate its specific ecological functions and interactions within these communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus versutus Cocci 34007 QTUJ00000000.1 Bac0001126 Rhodovulum sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sp. 34009 PALT00000000.1 Bac0001127 Moraxella cuniculi Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella cuniculi 34061 NZ_LR134343.1 Bac0001128 Faucicola osloensis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 PKJS00000000.1 Bac0001129 Faucicola osloensis str. KSH Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_CP024182.1 Bac0001130 Faucicola osloensis str. TT16 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_CP024189.1 Bac0001131 Faucicola osloensis str. KMC41 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_AP017382.1 Bac0001132 Pseudomonas amygdali pv. mori Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 34065 LJQU00000000.1 Bac0001133 Variovorax paradoxus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus 34073 LKTV00000000.1 Bac0001134 Riemerella anatipestifer str. HXb2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella anatipestifer 34085 NZ_CP011859.1 Bac0001135 Riemerella anatipestifer str. RCAD0133 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella anatipestifer 34085 NZ_CP029760.1 Bac0001136 Sphingobacterium faecium str. DSM 11690 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium faecium 34087 QBKH00000000.1 Bac0001137 Streptobacillus moniliformis Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis 34105 UAVA00000000.1 Bac0001138 Geobacter sulfurreducens str. YM18 "Geobacter sulfurreducens strain YM18 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 30.0°C. This strain is part of a broader group of Geobacter species known for their ability to reduce metal ions and contribute to biogeochemical cycles, particularly in environments where organic matter is present.↵↵G. sulfurreducens YM18 is notable for its versatile habitat utilization, suggesting it can adapt to a variety of anaerobic environments. This adaptability may enable it to play significant roles in the degradation of organic compounds and in the reduction of metal oxides in various ecosystems, including sediments and subsurface environments. The metabolic pathways employed by this strain facilitate electron transfer processes that are crucial for energy acquisition in oxygen-limited settings.↵↵The ecological significance of G. sulfurreducens YM18 lies in its potential applications in bioremediation and bioenergy, particularly in the context of microbial fuel cells, where its ability to transfer electrons to electrodes could be harnessed for sustainable energy production. Furthermore, the strain's adaptation to multiple habitats underscores the importance of anaerobic microorganisms in maintaining ecosystem functions, particularly in conditions where oxygen is scarce." Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens Negative Rod Yes 1 2 Anaerobe 30 Mesophilic Multiple 35554 NZ_AP017912.1 Bac0001139 Citrobacter amalonaticus "Citrobacter amalonaticus is a Gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classified as a mesophilic organism. As a chemoheterotroph, it derives energy and carbon from organic compounds, which it metabolizes in various environments. This microbe is typically found in the gastrointestinal tracts of humans and animals, as well as in soil and water, indicating its widespread presence in the ecosystem. The Gram-negative characteristic of C. amalonaticus signifies that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that contribute to its pathogenic potential and immune evasion. Its rod shape allows for efficient movement and colonization in diverse environments, enhancing its survival abilities. As a mesophile, C. amalonaticus prefers moderate temperatures, typically between 20°C and 45°C, making it well-suited for life in warm-blooded hosts. Being a chemoheterotroph, C. amalonaticus relies on organic compounds for both energy and carbon, allowing it to thrive in nutrient-rich environments such as the intestinal flora. This microbe is classified as a facultative anaerobe, which means it can grow in both the presence and absence of oxygen. This adaptability is crucial for its survival in the host gut, where oxygen levels may vary significantly. Citrobacter amalonaticus is also recognized for its potential pathogenicity, as it can be associated with urinary tract infections and other opportunistic infections, particularly in immunocompromised individuals. Its ability to produce certain enzymes, such as urease, contributes to its pathogenic profile. Furthermore, the microbe plays a role in biogeochemical cycling, particularly in nitrogen transformations, highlighting its ecological significance beyond human health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter amalonaticus Negative Facultative anaerobe gut 35703 NZ_CP014015.2 Bac0001140 Haloferax gibbonsii str. ARA6 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax gibbonsii 35746 NZ_CP011950.1 Bac0001141 Bifidobacterium choerinum str. FMB-1 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium choerinum 35760 NZ_CP018045.1 Bac0001142 Bifidobacterium choerinum str. LMG 10510 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium choerinum 35760 JGYU00000000.1 Bac0001143 Nocardioides sp. Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. 35761 PBYI00000000.1 Bac0001144 Nitrosospira briensis Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira briensis 35799 FOVJ00000000.1 Bac0001145 Rhodovulum adriaticum str. DSM 2781 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum adriaticum anaerobic 35804 SLXL00000000.1 Bac0001146 Rhodovulum sulfidophilum Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sulfidophilum anaerobic 35806 MSYR00000000.1 Bac0001147 Helicobacter heilmannii "Helicobacter heilmannii is a Gram-negative, curved or spiral-shaped microbe that thrives optimally at a temperature of 37.0°C and exhibits microaerophilic growth requirements. This bacterium is non-spore-forming, indicating that it does not produce spores as a means of survival under adverse conditions. ↵↵Helicobacter heilmannii is closely associated with the gastric environment, where it likely interacts with the host's mucosal lining. Its microaerophilic nature suggests that it requires lower levels of oxygen for growth compared to atmospheric conditions, which aligns with its adaptation to the gastrointestinal tract where oxygen levels are typically reduced. The optimal growth temperature of 37.0°C reflects its adaptation to the warm-blooded host organisms, which may influence its distribution and interactions within various mammalian species.↵↵Understanding the traits of H. heilmannii provides insight into its potential role in the microbiome of the stomach and its possible interactions with other microbial species present in this niche. This microbe may contribute to the complex dynamics of gastric microbiota, influencing both host health and disease processes. Further investigation into its ecological role could enhance our understanding of microbial communities in the gastrointestinal tract and their impact on host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter heilmannii Gram-negative curved/spiral microaerophile 37 mesophilic non-spore-forming 35817 CDMM00000000.1 Bac0001148 Helicobacter pullorum "Helicobacter pullorum is a Gram-negative, spiral-shaped microbe that thrives in temperatures ranging from 25-40°C, making it a mesophile. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, and its primary energy source is likely a combination of amino acids, carbohydrates, and other organic molecules. The energy production pathway is through anaerobic respiration, utilizing fermentation and anaerobic glycolysis to generate ATP. Helicobacter pullorum can be found in various body sites across all species, including the respiratory, gastrointestinal, and genitourinary tracts, as well as on the skin and in the oral cavity. Its ability to colonize multiple sites and adapt to different environments allows it to thrive in a wide range of ecological niches. Additionally, its ability to resist acidic environments and oxygen toxicity enables it to survive in areas where other microbes may not be able to. Oxygen preference is another characteristic that sets Helicobacter pullorum apart. It is a microaerophile, meaning it prefers to grow in the presence of low levels of oxygen, typically 0.1-10% of the atmosphere. This allows it to thrive in environments where oxygen is limited, such as in the deep tissues or in areas with reduced blood flow. In recent studies, Helicobacter pullorum has been linked to various diseases, including gastroenteritis, pneumonia, and urinary tract infections. Its ability to colonize and persist in different body sites makes it a significant player in the human microbiome, and further research is needed to fully understand its role in human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pullorum Negative Microaerophile 35818 UGJF00000000.1 Bac0001149 Helicobacter pullorum str. NAP1W4 "Helicobacter pullorum strain NAP1W4 is a Gram-negative, microaerophilic bacterium. As a member of the Helicobacter genus, this organism is characterized by its requirement for low oxygen levels, which is essential for its growth and metabolic processes. The microaerophilic nature of H. pullorum suggests that it thrives in environments where oxygen concentrations are lower than those found in the atmosphere, potentially allowing it to inhabit specialized niches within its biological or ecological environments. ↵↵While the specific pathogenicity and ecological roles of H. pullorum strain NAP1W4 are not detailed in the current context, its classification as a microaerophile indicates that it may be associated with habitats such as the gastrointestinal tracts of animals or other environments with limited oxygen availability. This trait could facilitate interactions with other microbial communities or influence its survival strategies in competitive ecosystems. ↵↵Furthermore, the Gram-negative cell wall structure of H. pullorum, which includes an outer membrane and a thin peptidoglycan layer, may contribute to its adaptability and resilience in varying environmental conditions. The unique combination of traits exhibited by this strain highlights its potential significance in understanding microbial diversity and the role of microaerophilic bacteria in ecological systems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pullorum Negative Microaerophile 35818 LXWI00000000.1 Bac0001150 Caldibacillus thermoamylovorans str. SSBM "Caldibacillus thermoamylovorans str. SSBM is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This organism demonstrates the ability to thrive in both aerobic and anaerobic environments, allowing it to adapt to varying conditions, particularly in thermophilic habitats. As a member of the genus Caldibacillus, it is likely adapted to high-temperature environments, which may influence its metabolic pathways and enzymatic activities.↵↵The facultative anaerobic nature of Caldibacillus thermoamylovorans str. SSBM suggests that it can utilize different metabolic strategies depending on the availability of oxygen. This versatility could enable it to play a role in nutrient cycling within its environment, potentially contributing to the degradation of complex organic materials, especially at elevated temperatures. ↵↵Understanding the metabolic capabilities of Caldibacillus thermoamylovorans str. SSBM could provide insights into its potential applications in biotechnology, particularly in processes that require thermophilic conditions, such as bioremediation and the production of biofuels from biomass. Overall, the adaptability of this microbe reflects the intricate balance of microbial life in thermophilic ecosystems, where oxygen availability can fluctuate significantly." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus thermoamylovorans Positive Rod Facultative anaerobe 35841 NZ_CP023704.1 Bac0001151 Caldibacillus thermoamylovorans "Caldibacillus thermoamylovorans is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This organism thrives in high-temperature environments, indicating its thermophilic nature, which suggests an adaptation to extreme conditions that may be found in geothermal habitats. The ability to grow in both the presence and absence of oxygen enhances its survival in fluctuating environmental conditions, allowing it to utilize various metabolic pathways depending on the availability of oxygen.↵↵The rod shape of Caldibacillus thermoamylovorans may confer advantages in nutrient acquisition and motility, although specific motility mechanisms have not been detailed in the current trait data. Its facultative anaerobic metabolism may also enable it to play a role in nutrient cycling within its habitat, potentially influencing the microbial community dynamics in thermophilic environments.↵↵Given its thermophilic characteristics and metabolic flexibility, Caldibacillus thermoamylovorans may contribute to the degradation of organic matter in high-temperature ecosystems, impacting the overall biochemical processes within these environments. Further research into its metabolic pathways and ecological interactions could provide deeper insight into its role in thermophilic microbial communities and its potential applications in biotechnology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus thermoamylovorans Positive Rod Facultative anaerobe 35841 JXLU00000000.1 Bac0001152 Pseudomonas cichorii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cichorii 36746 RBRY00000000.1 Bac0001153 Corynebacterium bovis Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium bovis microaerophile 37 mesophilic 36808 PQNQ00000000.1 Bac0001154 Mycobacteroides abscessus "Mycobacteroides abscessus is a rod-shaped bacterium that thrives in chloraminated water environments. This microbe is part of a broader group of bacteria that can adapt to various ecological niches, particularly those influenced by human activity, such as water treatment systems. The presence of M. abscessus in chloraminated water suggests a potential resilience to chemical disinfection processes, which may allow it to persist in treated water supplies. ↵↵The rod shape of M. abscessus is characteristic of its genus, which is known for its unique cell wall structure that contributes to its survival in diverse conditions. Research into the habitat and survival mechanisms of M. abscessus can provide insights into water quality management and the potential risks associated with microbial contamination in municipal water supplies. Understanding the ecological role of this bacterium in chloraminated environments may help elucidate its interactions with other microbial communities and its responses to environmental stressors. ↵↵Furthermore, the adaptability of M. abscessus to chloraminated water highlights the importance of monitoring and managing water treatment processes to mitigate any unintended consequences on microbial ecology and public health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 CSVM00000000.1 Bac0001155 Mycolicibacterium agri Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium agri 36811 PDCP00000000.1 Bac0001156 Streptomyces caelestis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces caelestis 29 mesophilic 36816 LGCN00000000.1 Bac0001157 Streptomyces subrutilus str. 10-1-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces subrutilus 36818 MEHK00000000.1 Bac0001158 Terrisporobacter glycolicus "Terrisporobacter glycolicus is a Gram-positive, rod-shaped microbe that prefers temperatures between 25-45°C, placing it in the mesophilic category. As a chemoorganotroph, it obtains its energy by breaking down organic compounds, specifically glycerol, which serves as its primary energy source. This process involves the oxidation of glycerol to form ATP, making it a chemosynthetic organism. While it can reside in various body sites across different species, including the human gut, soil, and aquatic environments, its primary habitat is in the gastrointestinal tracts of animals. As a Gram-positive microbe, Terrisporobacter glycolicus has a thick peptidoglycan layer in its cell wall, which provides resistance to external stresses. Its rod shape allows it to move efficiently through its environment, potentially increasing its chances of interacting with potential energy sources. The mesophilic temperature range it prefers indicates that it thrives in moderate temperatures, often found in temperate regions. Terrisporobacter glycolicus is an obligate anaerobe, meaning it requires a completely oxygen-free environment to survive. This is due to the fact that the enzymes involved in glycerol breakdown are sensitive to oxygen and would be inactivated by its presence. When grown in vitro, this microbe is typically cultured under anaerobic conditions to mimic its natural environment. Lastly, research has shown that Terrisporobacter glycolicus is capable of producing a wide range of volatile organic compounds (VOCs) as byproducts of its metabolic processes. These VOCs have been linked to changes in the human gut microbiome and may play a role in shaping the complex interplay between microorganisms and their hosts. Overall, Terrisporobacter glycolicus is a fascinating microbe that continues to yield insights into the intricate relationships between microorganisms and their environments." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Terrisporobacter Terrisporobacter glycolicus Rod No 1 Anaerobic Chemoheterotroph Mesophilic Nonsporulating 36841 FORW00000000.1 Bac0001159 Oxobacter pfennigii str. DSM 3222 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Oxobacter Oxobacter pfennigii anaerobic 36849 LKET00000000.1 Bac0001160 Sinorhizobium saheli str. LMG 7837 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium saheli 36856 LNQB00000000.1 Bac0001161 Porphyromonas cangingivalis str. COT-109 OH1386 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas cangingivalis anaerobic 36874 JQJD00000000.1 Bac0001162 Nocardia brasiliensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia brasiliensis 37326 UGSN00000000.1 Bac0001163 Nocardia farcinica str. TRH1 "Nocardia farcinica strain TRH1 is a Gram-positive, coccoid bacterium characterized by its filamentous cell arrangement. This microbe is a chemoheterotroph, deriving its energy from organic compounds, and thrives optimally at a temperature of 37.0°C. As an aerobic organism, N. farcinica TRH1 requires oxygen for its metabolic processes, which aligns with its habitat preference for soil environments. ↵↵The nonsporulating nature of this strain suggests a reliance on vegetative growth under favorable conditions rather than forming spores as a survival strategy. The filamentous arrangement of its cells may contribute to its ability to colonize and interact with soil microenvironments effectively, potentially facilitating its role in nutrient cycling within its ecosystem.↵↵Overall, the ecological insight into Nocardia farcinica str. TRH1 highlights its adaptation to soil habitats where it may play a significant role in the decomposition of organic materials, thus influencing soil health and fertility in its native environment." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia farcinica Positive Cocci No 1 1 Aerobe 37 Chemoheterotroph Mesophilic Soil Free living Filaments Nonsporulating 37329 LYCQ00000000.1 Bac0001164 Nocardia farcinica "Nocardia farcinica is a Gram-positive bacterium characterized by its filamentous arrangement of cocci and its classification as a chemoheterotroph. This species thrives in aerobic conditions and is optimally active at a temperature of 37.0°C, which is consistent with its adaptation to environments that may mimic mammalian body temperatures. Nocardia farcinica is nonsporulating, indicating it does not form spores as a means of survival, which may reflect its ecological niche within soil habitats where it can exploit organic matter for energy.↵↵As an inhabitant of the soil, Nocardia farcinica plays a role in the decomposition of organic materials, contributing to nutrient cycling in terrestrial ecosystems. Its filamentous structure may enhance its ability to penetrate and colonize various substrates, facilitating its survival and metabolic activities in complex soil environments. The ecological dynamics of Nocardia farcinica, particularly its interactions with other soil microorganisms and its potential role in biogeochemical processes, remain areas of interest for further research, highlighting the significance of this organism in soil microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia farcinica Positive Cocci No 1 1 Aerobe 37 Chemoheterotroph Mesophilic Soil Free living Filaments Nonsporulating 37329 NZ_LN868942.1 Bac0001165 Thermus scotoductus "Thermus scotoductus is a gram-positive, rod-shaped bacteria that thrives in extreme environments with temperatures ranging from 55°C to 70°C, categorizing it as a thermophilic microbe. As a chemolithoautotroph, it derives its energy from the oxidation of elemental sulfur, utilizing hydrogen sulfide as its energy source. This process allows it to produce energy through the conversion of chemical bonds, characteristic of chemosynthesis. As an autotroph, Thermus scotoductus is capable of producing its own food through chemical reactions, utilizing the energy obtained from the oxidation of sulfur compounds. Its metabolic process is independent of light, as it does not require photosynthesis to generate energy. Thermus scotoductus is found in various environments, including hot springs, geothermal areas, and deep-sea hydrothermal vents. Its ability to thrive in these conditions makes it a unique microbe, capable of surviving in a wide range of temperatures and environments. As an obligate aerobe, Thermus scotoductus requires the presence of oxygen to survive. It is unable to grow in anaerobic conditions and is sensitive to the absence of oxygen. This characteristic is consistent with its ability to thrive in environments where oxygen is readily available. One of the most significant aspects of Thermus scotoductus is its ability to produce sulfuric acid as a byproduct of its metabolic process. This characteristic makes it an important player in the natural cycle of sulfur, as it helps to regulate the levels of sulfur compounds in the environment. Thermus scotoductus plays a crucial role in the decomposition of organic matter in hot environments, breaking down complex biomolecules into simpler compounds. Its ability to thrive in extreme conditions makes it an important component of these ecosystems, contributing to the decomposition and recycling of nutrients." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus Rod No 1 facultative anaerobe 60 Chemoheterotroph Thermophilic Multiple Nonsporulating 37636 PELW00000000.1 Bac0001166 Candidatus Phytoplasma mali str. strain AT Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma mali 37692 NC_011047.1 Bac0001167 Enterococcus casseliflavus "Enterococcus casseliflavus is a Gram-positive, coccus-shaped bacterium that thrives in temperatures ranging from 30°C to 45°C, categorizing it as a mesophilic microorganism. As a heterotroph, it obtains its energy by breaking down organic compounds, such as sugars, amino acids, and other nutrients. The process of energy production is achieved through the breakdown of these organic compounds, resulting in the production of ATP through cellular respiration. E. casseliflavus is found in various body sites across all possible species, including the human gut, skin, and respiratory tract. Its presence is often associated with individuals suffering from chronic diseases, such as diabetes, cancer, and bacterial infections. In terms of oxygen preference, E. casseliflavus is classified as a facultative anaerobe, meaning it can survive and grow in both aerobic and anaerobic environments. However, it exhibits optimal growth in the presence of oxygen, indicating a preference for aerobic conditions. E. casseliflavus has a unique ability to form biofilms, which are complex communities of microorganisms that adhere to surfaces. These biofilms provide protection from environmental stresses, antibiotics, and the host immune system, allowing the bacterium to persist and thrive in its environment. E. casseliflavus has been recognized as a potential opportunistic pathogen, capable of causing infections in compromised hosts. Its ability to form biofilms and its antibiotic resistance make it a challenging target for treatment. Despite its potential pathogenic properties, E. casseliflavus has also been found to have beneficial properties, such as its ability to produce antimicrobial compounds that inhibit the growth of other bacteria. Furthermore, its presence in the human gut microbiome has been linked to improved immune function and reduced inflammation." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe intestines 37734 MJEG00000000.1 Bac0001168 Flavobacterium hibernum str. DSM 12611 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium hibernum 37752 JPRK00000000.1 Bac0001169 Dietzia maris str. DSM 43672 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia maris 37915 LVFF00000000.1 Bac0001170 Rhodococcus opacus str. 1CP "Rhodococcus opacus str. 1CP is a Gram-positive bacterium characterized by its cocci shape and filamentous cell arrangement. This microbe is an obligate aerobe, requiring oxygen for its metabolic processes. The filamentous arrangement of its cells suggests a potential for enhanced surface area, which may facilitate nutrient absorption and intercellular communication among individual cells.↵↵Rhodococcus species are well-known for their versatile metabolic capabilities, particularly in the degradation of a wide range of organic compounds. While the specific metabolic pathways of strain 1CP have not been detailed, its classification within the Rhodococcus genus implies an ability to adapt to various environmental conditions, which may include the degradation of pollutants. ↵↵Additionally, the filamentous growth form may play a role in its ecological interactions, potentially allowing for biofilm formation or increased resilience in fluctuating environments. The presence of aerobic respiration mechanisms suggests a capacity for growth in oxygen-rich environments, which may position it as a significant player in soil microbiomes or other aerobic habitats. ↵↵Further investigation into the metabolic pathways and ecological roles of Rhodococcus opacus str. 1CP could provide insights into its potential applications in bioremediation and industrial microbiology, highlighting the importance of this strain in biotechnological contexts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 37919 NZ_CP009111.1 Bac0001171 Rhodococcus opacus str. 04-OD7 "Rhodococcus opacus strain 04-OD7 is a Gram-positive, aerobic bacterium characterized by its coccoid shape and filamentous cell arrangement. This strain exhibits a notable ability to thrive in aerobic conditions, indicating its reliance on oxygen for metabolic processes. The filamentous arrangement of cells may suggest a potential for complex interactions within microbial communities or biofilm formation, which could enhance its survival in various environments.↵↵Given its classification within the Rhodococcus genus, strain 04-OD7 may possess unique metabolic capabilities, such as the degradation of organic compounds, providing insights into its role in biogeochemical cycles. Additionally, the filamentous structure may facilitate nutrient exchange and resource utilization, underscoring the potential ecological significance of this strain in its native habitat.↵↵This combination of traits highlights the adaptability of Rhodococcus opacus strain 04-OD7 to aerobic environments, suggesting that it could play a role in the ecological dynamics of soil or other oxygen-rich ecosystems where organic matter decomposition is essential. Future studies could explore its interactions with other microorganisms and its potential applications in bioremediation processes, leveraging its metabolic versatility." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 37919 PUIO00000000.1 Bac0001172 Rhodococcus opacus str. R7 "Rhodococcus opacus strain R7 is a Gram-positive bacterium characterized by its cocci shape and filamentous cell arrangement. This microbe requires oxygen for growth, classifying it as an aerobic organism. The structural properties of R. opacus str. R7, particularly its filamentous arrangement, may confer advantages in nutrient acquisition and colonization in various environments.↵↵R. opacus species are known for their metabolic versatility, including the ability to degrade a range of organic compounds, which suggests potential applications in bioremediation processes. While the specific biochemical pathways utilized by strain R7 are not detailed here, the broader genus is recognized for its capacity to metabolize hydrocarbons and other complex organic molecules. This trait may enable R. opacus str. R7 to thrive in environments impacted by anthropogenic activities, such as contaminated soils or waste sites.↵↵In conclusion, the filamentous arrangement of R. opacus str. R7, coupled with its aerobic metabolism, positions it as a potentially important organism in ecological contexts where organic degradation and nutrient cycling are critical. Further research could elucidate its specific roles in such environments, enhancing our understanding of microbial contributions to ecosystem health and recovery." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 37919 NZ_CP008950.1 Bac0001173 Arthrobacter agilis str. UMCV2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter agilis 37921 NZ_CP024915.1 Bac0001174 Sinomonas atrocyanea str. KCTC 3377 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Sinomonas Sinomonas atrocyanea 37927 NZ_CP014519.1 Bac0001175 Crystallibacter crystallopoietes "Crystallibacter crystallopoietes is a rod-shaped bacterium characterized by its distinct morphological features. This organism is notable within its genus for its unique structural and biochemical properties, which may contribute to its adaptability in various environments. ↵↵The rod shape of Crystallibacter crystallopoietes suggests a cellular organization that could influence its motility and ecological interactions. While specific metabolic pathways and ecological niches remain to be elucidated, the morphology of this bacterium indicates potential roles in biogeochemical cycles, particularly if it exhibits specialized metabolic capabilities associated with its rod shape.↵↵In summary, Crystallibacter crystallopoietes exemplifies the diversity of rod-shaped bacteria, potentially serving as a model for understanding the ecological roles of similar microorganisms in their natural habitats. The implications of its morphology on ecological interactions warrant further investigation, particularly in the context of microbial community dynamics." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Crystallibacter Crystallibacter crystallopoietes Rod 37928 FNKH00000000.1 Bac0001176 Methanolobus vulcani Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus vulcani 38026 FNCA00000000.1 Bac0001177 Corynebacterium genitalium Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium genitalium 38288 RBLQ00000000.1 Bac0001178 Corynebacterium jeikeium "Corynebacterium jeikeium is a Gram-positive, rod-shaped bacterium that typically exists as single cells. As a facultative aerobe, it has the ability to grow in both the presence and absence of oxygen, which allows it to thrive in diverse environments. C. jeikeium is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, adapting to various nutrient sources in its habitat. ↵↵This bacterium is known to inhabit multiple environments, suggesting a degree of ecological versatility. Its ability to metabolize organic materials and tolerate varying oxygen levels may contribute to its survival in different ecological niches, potentially including human-associated environments. ↵↵Overall, the adaptability of C. jeikeium to fluctuating oxygen levels and its organic nutrient requirements highlight its ecological resilience, which may play a role in its interactions within microbial communities and its potential presence in clinical contexts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium Positive Rod No 1 1 Facultative aerobe Chemoorganotroph Mesophilic Multiple Free living Singles 38289 NZ_LS483459.1 Bac0001179 Photobacterium damselae Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae mesophilic 38293 PYOG00000000.1 Bac0001180 Photobacterium damselae subsp. piscicida str. MT1415 "Photobacterium damselae subsp. piscicida str. MT1415 is a Gram-negative bacterium notable for its potential relevance in aquatic environments. This microorganism is part of the family Vibrionaceae, which includes various species associated with marine ecosystems. The Gram-negative nature of P. damselae subsp. piscicida indicates a distinctive cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵As a member of the genus Photobacterium, this strain may possess the capability for bioluminescence, a trait common among many species in this genus, although specific data on luminescent properties for strain MT1415 is not provided. The ecological significance of P. damselae subsp. piscicida likely encompasses interactions within marine food webs, potentially influencing the dynamics of microbial communities and nutrient cycling in aquatic environments.↵↵Further investigation into this strain's metabolic pathways and environmental tolerances could reveal its roles in marine biogeochemistry and its interactions with other microbial organisms. Understanding these traits may also provide insights into the evolutionary adaptations of bacteria within marine ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae negative 38294 SUMH00000000.1 Bac0001181 Streptomyces pristinaespiralis str. HCCB 10218 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces pristinaespiralis 38300 NZ_CP011340.1 Bac0001182 Corynebacterium minutissimum Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium minutissimum 38301 UFXP00000000.1 Bac0001183 Corynebacterium mycetoides Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium mycetoides aerobic / microaerophile 37 mesophilic 38302 NZ_LT629700.1 Bac0001184 Rhodococcus coprophilus Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus coprophilus 29 mesophilic 38310 NZ_LS483468.1 Bac0001185 Shewanella algae str. KC-Na-R1 "Shewanella algae str. KC-Na-R1 is a Gram-negative, rod-shaped bacterium that can exist as single cells or in pairs. This strain is characterized by its heterotrophic metabolism, utilizing organic compounds as its energy source. It exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. The capacity to adapt to varying oxygen levels suggests that S. algae str. KC-Na-R1 may play versatile roles in different ecological niches, potentially participating in biogeochemical cycles in diverse habitats. ↵↵Given its adaptability and metabolic versatility, S. algae str. KC-Na-R1 could be significant in various environmental contexts, including nutrient cycling and organic matter degradation. This adaptability may allow it to occupy niches that are less favorable for strictly aerobic or anaerobic organisms, highlighting its potential importance in microbial communities across different ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella algae Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Multiple Free living Pairs - Singles 38313 NZ_CP033575.1 Bac0001186 Blastococcus aggregatus Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus aggregatus aerobic 38502 OBQI00000000.1 Bac0001187 Methanococcus maripaludis str. JJ "Methanococcus maripaludis strain JJ is a coccoid archaeon characterized by its single-cell arrangement and anaerobic metabolism. This microorganism thrives optimally at a temperature of 35.0°C and utilizes lithotrophic pathways for energy, likely deriving it from the reduction of carbon dioxide to methane. M. maripaludis str. JJ is typically found in aquatic environments, where it plays a role in the biogeochemical cycling of carbon and methane. ↵↵As an obligate anaerobe, this strain contributes to the anaerobic degradation processes in its habitat, which can significantly influence the ecological dynamics of sedimentary environments. Its metabolic processes not only aid in maintaining the redox balance in these ecosystems but also demonstrate the significance of methanogenic archaea in global carbon cycling. This organism's ability to thrive in specific temperature and energy conditions highlights its potential role in biotechnological applications aimed at methane production or bioremediation in anaerobic settings." Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis Cocci No 1 1 Anaerobe 35 Lithotroph Mesophilic Aquatic Free living Singles 39152 NZ_CP026606.1 Bac0001188 Streptomyces laurentii str. ATCC 31255 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces laurentii 25 mesophilic spore-forming 39478 AP017424.1 Bac0001189 Andreesenia angusta str. DSM 1989 "Andreesenia angusta str. DSM 1989 is a Gram-positive, rod-shaped bacterium that demonstrates a non-spore-forming lifestyle and thrives optimally at a temperature of 32.0 °C. The Gram-positive nature of this microbe suggests the presence of a thick peptidoglycan layer, which is characteristic of its cell wall structure, potentially influencing its resilience in various environmental conditions. ↵↵Being a rod-shaped organism, A. angusta may exhibit a range of growth patterns and interactions within microbial communities. The absence of spores indicates that this strain relies on other mechanisms for survival and propagation, such as binary fission, which may influence its adaptability to fluctuating environmental conditions. The optimal growth temperature of 32.0 °C suggests that A. angusta is well-suited to thrive in moderately warm habitats, possibly reflecting its adaptation to specific ecological niches that provide stable thermal conditions.↵↵This combination of traits indicates that A. angusta could play a role in nutrient cycling or other ecological processes within its habitat. The non-spore-forming characteristic might also suggest a more specialized ecological strategy, potentially limiting its distribution to environments where it can maintain favorable growth conditions. Understanding the physiological and ecological roles of A. angusta could provide insights into its interactions with other microorganisms and its contribution to microbial diversity." Bacillati Bacillota Tissierellia Tissierellales Gottschalkiaceae Andreesenia Andreesenia angusta Gram-positive rod motile 32 mesophilic non-spore-forming 39480 MKIE00000000.1 Bac0001190 Clostridium combesii str. DSM 20696 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium combesii anaerobic 39481 PEIK00000000.1 Bac0001191 Faecalicatena contorta "Faecalicatena contorta is a recently identified species of bacteria primarily found in the intestinal microflora of animals. As a chemoheterotroph, it relies on organic compounds from its host for energy and carbon, playing a potential role in nutrient absorption and digestion. This microbe contributes to the complex ecosystem of gut bacteria, which is crucial for maintaining the health of its host. The ecological interactions of F. contorta within the gut environment can significantly influence the overall microbial composition and metabolic activities of the intestinal microbiome. By participating in the degradation of complex carbohydrates and proteins, it aids in the fermentation processes that produce short-chain fatty acids, important for gut health and providing energy to colonocytes. Moreover, the presence of F. contorta might reflect the dietary habits and health status of its host, as shifts in the gut microbiota can be indicative of various physiological conditions. Its ability to thrive in the animal intestinal niche underlines the intricate relationship between host and microbe, emphasizing the importance of maintaining a balanced microbial community for optimal digestive function. Through its metabolic activities and interactions, Faecalicatena contorta may offer insights into the mechanisms of gut health and disease, potentially guiding future research into dietary interventions and probiotic development aimed at promoting gut microbial balance." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalicatena Faecalicatena contorta Gram-positive rod No 1 37 Chemoheterotroph mesophilic Animal Intestinal Microflora non-spore-forming 39482 CYZU00000000.1 Bac0001192 Lachnospira eligens "Lachnospira eligens is a Gram-negative, rod-shaped bacterium that is classified as an anaerobe, meaning it thrives in environments devoid of oxygen. This microbe is host-associated, indicating its presence in specific biological hosts rather than in free-living or environmental settings. The anaerobic nature of Lachnospira eligens suggests that it likely plays a role in anaerobic fermentation processes, which are critical for metabolic activities within its host. ↵↵As a member of the diverse gut microbiota, Lachnospira eligens may contribute to the fermentation of dietary fibers, producing short-chain fatty acids that are beneficial for host health. The metabolic activities of this bacterium could influence the overall gut environment and impact the nutritional status of the host. Understanding the role of Lachnospira eligens in the gut ecosystem may provide insights into its potential contributions to host metabolic functions, gut homeostasis, and the maintenance of a balanced microbiota. ↵↵Further research into its specific interactions and functions within the host can elucidate its significance in health and disease, highlighting the intricate relationships between gut-associated microorganisms and their hosts." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira eligens Negative Rod 1 Anaerobe Mesophilic HostAssociated Free living 39485 QSIS00000000.1 Bac0001193 Dorea formicigenerans "Dorea formicigenerans is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites of humans and animals, including the gastrointestinal tract, skin, and respiratory system. As an obligate anaerobe, Dorea formicigenerans requires the absence of oxygen to grow and survive, which is reflected in its optimal growth conditions. The Gram-positive characteristic of Dorea formicigenerans indicates that it has a thick peptidoglycan layer in its cell wall, providing it with a robust structure. Its rod shape allows it to maintain a large surface area, facilitating the exchange of nutrients and waste products. As a chemoheterotroph, Dorea formicigenerans relies on organic compounds for energy and carbon, which it obtains from its surroundings. This microbe can be found in a wide range of body sites, from the oral cavity to the gut, and even in the environment, such as in soil and water. The inability of Dorea formicigenerans to survive in the presence of oxygen makes it well adapted to environments with low oxygen levels, such as the human gut. Dorea formicigenerans plays a significant role in the fermentation of complex carbohydrates and production of short-chain fatty acids, which are essential for maintaining a healthy gut microbiome, and its unique metabolic capabilities allow it to contribute to the degradation of various organic compounds, making it a key player in the ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QSQQ00000000.1 Bac0001194 Anaerobutyricum hallii "Anaerobutyricum hallii is a Gram-negative, rod-shaped microbe that thrives in a variety of environments, particularly in the human gut. It is a thermophilic microbe, meaning it prefers temperatures between 37°C to 45°C, which is well within the range of human body temperature. As a chemoheterotroph, Anaerobutyricum hallii harnesses energy from the breakdown of organic matter, specifically from the fermentation of simple sugars, amino acids, and other nutrients. It produces ATP through anaerobic respiration, utilizing the process of substrate-level phosphorylation. Anaerobutyricum hallii can be found in all body sites, including the gut, respiratory tract, and skin, as well as in various environmental niches, such as soil, sediments, and water. Its ability to inhabit a wide range of environments is likely due to its flexibility in adapting to different temperatures and nutrient availability. As an obligate anaerobe, Anaerobutyricum hallii requires a low-oxygen environment to survive, as oxygen would inhibit its metabolic processes. Its anaerobic nature enables it to thrive in environments where oxygen levels are low, such as in the human gut or in sedimentary environments. Anaerobutyricum hallii plays a crucial role in the human gut microbiome, contributing to the breakdown of complex nutrients and the production of short-chain fatty acids, which are essential for gut health. Its presence has also been linked to the development of certain gastrointestinal disorders, highlighting the importance of understanding the complex relationships within the human microbiome. Notably, Anaerobutyricum hallii has been shown to produce a range of bioactive compounds, including butyrate, which has been implicated in the regulation of inflammation and the maintenance of gut barrier function. Its ability to produce these compounds highlights its potential as a probiotic, potentially offering therapeutic benefits for human health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Anaerobutyricum hallii Positive No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 39488 QSOE00000000.1 Bac0001195 Eubacterium ramulus str. 21 "Eubacterium ramulus str. 21 is a Gram-positive, anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. As a member of the Eubacterium genus, this strain exhibits typical traits associated with anaerobic metabolism, potentially utilizing fermentation pathways to generate energy. The Gram-positive nature of Eubacterium ramulus str. 21 suggests a robust cell wall structure, which may contribute to its survival in complex microbial communities where competition for resources is significant.↵↵The anaerobic requirement of this strain indicates its ecological niche likely encompasses environments such as the gastrointestinal tracts of animals or other anoxic habitats, where oxygen levels are inherently low. Such conditions may foster interactions with other microbial species, contributing to the overall microbial diversity and metabolic functions within the community. ↵↵Insight into Eubacterium ramulus str. 21 can be gained by considering its potential role in nutrient cycling within anaerobic environments. By participating in the breakdown of organic matter, this strain may play a crucial role in the fermentation processes that contribute to the health of the host ecosystem. Understanding the specific metabolic pathways and ecological interactions of Eubacterium ramulus str. 21 could provide valuable insights into the dynamics of anaerobic microbial communities and their contributions to ecosystem functioning." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ramulus Positive Anaerobe 39490 JRFU00000000.1 Bac0001196 Agathobacter rectalis "Agathobacter rectalis is a Gram-positive, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is classified as an anaerobe. This microbe thrives optimally at a temperature of 37.0°C, suggesting an adaptation to warm environments, potentially aligning with the physiological conditions found within the mammalian gut. Notably, Agathobacter rectalis is nonsporulating, indicating that it does not form spores as a means of survival under adverse conditions.↵↵The bacterium's chemoheterotrophic nature allows it to utilize organic compounds as both a carbon and energy source, which is typical for many anaerobic bacteria inhabiting diverse environments. Its ability to thrive in multiple habitats underscores its ecological versatility, though the specifics of these habitats remain broad and varied. ↵↵The presence of Agathobacter rectalis in anaerobic environments, particularly within the gastrointestinal tract, may play a role in the complex microbial communities that contribute to gut health and functionality. This suggests a potential involvement in metabolic processes or interactions that could influence the host's digestive efficiency and overall well-being. Further research could elucidate the specific contributions of Agathobacter rectalis to these microbiomes and its interactions with other microbial species in various ecological contexts." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 CZAJ00000000.1 Bac0001197 Agathobacter rectalis str. R22 "Agathobacter rectalis strain R22 is a Gram-positive, nonsporulating, rod-shaped bacterium that thrives optimally at 37.0°C and exhibits anaerobic metabolic characteristics as a chemoheterotroph. This organism is capable of utilizing a variety of organic compounds for energy, reflecting its adaptability to diverse habitats. Its anaerobic nature suggests that it plays a significant role in environments where oxygen is limited, potentially contributing to the fermentation processes within those ecosystems.↵↵The ability of A. rectalis str. R22 to survive and metabolize in anaerobic conditions may implicate it in various ecological niches, including the gastrointestinal tract of mammals, where similar anaerobic conditions prevail. This bacterium's metabolic versatility could also suggest its involvement in biogeochemical cycles, particularly in the degradation of complex organic materials in sedimentary environments. Further studies could elucidate the specific contributions of A. rectalis str. R22 to microbial community dynamics and its potential interactions with other microbial taxa in its habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 JRFS00000000.1 Bac0001198 Eubacterium ventriosum "Eubacterium ventriosum is a Gram-positive, rod-shaped microbe that thrives in a temperature range of mesophilic, typically between 25-40°C. As a chemoheterotroph, it is able to derive its energy from the oxidation of organic compounds. Specifically, it utilizes glucose as its primary energy source, which is converted into adenosine triphosphate (ATP) through cellular respiration. As a microbe that inhabits various body sites, E. ventriosum can be found in all possible species, including the human body, where it is part of the normal flora. Its ability to thrive in such a wide range of environments is due to its exceptional flexibility in terms of energy production and oxygen preference. As an aerotolerant anaerobe, E. ventriosum can survive in the presence of oxygen, but it does not require it for growth. This unique characteristic allows it to coexist with other microorganisms that thrive in oxygen-rich environments, while also being able to withstand conditions without oxygen. Its ability to produce ATP through fermentation, in addition to its oxidative phosphorylation, further underscores its versatility. Physiologically, E. ventriosum is capable of producing a range of compounds that contribute to its ecological success. It can produce acids, such as lactic acid and acetic acid, which help to maintain the pH balance of its environment. Additionally, it can produce enzymes that break down complex polymers, allowing it to access energy-rich substrates. Furthermore, studies have shown that E. ventriosum plays a crucial role in human health, particularly in the gut microbiome. Its ability to catabolize complex carbohydrates and produce short-chain fatty acids (SCFAs) contributes to the maintenance of a healthy gut. The SCFAs produced by E. ventriosum serve as an energy source for the host and can also help to regulate the immune system. In conclusion, Eubacterium ventriosum is a remarkable microbe that has adapted to thrive in a wide range of environments, from the human gut to other body sites and beyond. Its unique combination of characteristics, including its ability to survive in the presence of oxygen, produce a range of compounds, and contribute to human health, make it an important and fascinating microbe to study." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ventriosum Positive Anaerobe feces 39496 QSFO00000000.1 Bac0001199 [Eubacterium] yurii "[Eubacterium] yurii is a rod-shaped, nonsporulating bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which it metabolizes in environments devoid of oxygen. ↵↵The adaptability of [Eubacterium] yurii to multiple habitats underscores its ecological versatility, allowing it to occupy diverse anaerobic niches where organic matter is present. Its nonsporulating nature suggests that it may rely on stable environmental conditions for survival, as it does not produce spores to withstand adverse situations. ↵↵Understanding the physiology and habitat preferences of [Eubacterium] yurii could provide insights into its role in microbial communities, particularly in environments rich in organic substrates, such as the human gut or various anaerobic ecosystems. This adaptability not only highlights its metabolic flexibility but also suggests potential interactions with other microorganisms, influencing nutrient cycling and ecosystem dynamics." Bacillati Bacillota Clostridia Peptostreptococcales Filifactoraceae Peptoanaerobacter [Eubacterium] yurii Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 39498 FUZS00000000.1 Bac0001200 Mesorhizobium ciceri str. CC1192 "Mesorhizobium ciceri str. CC1192 is a Gram-negative, nonsporulating bacterium classified within the group of chemoheterotrophs, utilizing organic compounds as its energy source. This strain is predominantly found in soil environments, where it plays a significant role in the nitrogen-fixing symbiosis with legumes, particularly chickpeas. ↵↵As a member of the Mesorhizobium genus, CC1192 is likely to engage in mutualistic relationships with host plants, contributing to soil fertility through the conversion of atmospheric nitrogen into a bioavailable form that benefits plant growth. The nonsporulating nature of this strain suggests a reliance on stable environmental conditions for survival, as it does not produce spores to withstand adverse conditions. ↵↵The ecological significance of Mesorhizobium ciceri str. CC1192 lies in its potential contribution to sustainable agricultural practices, particularly in legume cultivation. By enhancing nitrogen content in the soil, this strain may reduce the need for chemical fertilizers, thus promoting more environmentally friendly farming strategies. Furthermore, understanding the characteristics and behaviors of such soil bacteria can provide insights into optimizing legume-based cropping systems, which are critical for sustainable food production and soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium ciceri Negative Yes 1 Chemoheterotroph Mesophilic Soil Nonsporulating 39645 NZ_CP015062.1 Bac0001201 Mycolicibacterium moriokaense str. GAS496 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium moriokaense 39691 QJJU00000000.1 Bac0001202 Mycolicibacterium moriokaense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium moriokaense 39691 MVIB00000000.1 Bac0001203 Mycolicibacterium parafortuitum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium parafortuitum environment 39692 UEGS00000000.1 Bac0001204 Cereibacter sphaeroides f. sp. denitrificans str. IL106 "Cereibacter sphaeroides f. sp. denitrificans str. IL106 is a Gram-negative, rod-shaped bacterium that typically forms chains. This microorganism is notable for its photosynthetic capabilities, allowing it to harness light energy for growth. It can thrive in various habitats, demonstrating a versatile ecological adaptability. ↵↵C. sphaeroides f. sp. denitrificans str. IL106 exhibits a unique metabolic flexibility, functioning as both an aerobe and an anaerobe, enabling it to survive in diverse oxygen conditions. Its optimal growth temperature is 25.0°C, indicating a preference for moderate environments, which may reflect its ecological niches where such conditions are prevalent.↵↵The ability to switch between aerobic and anaerobic respiration may provide ecological advantages, particularly in fluctuating environments where oxygen levels can vary. This metabolic versatility likely contributes to its success in colonizing multiple habitats, suggesting a role in biogeochemical cycles, particularly in nitrogen transformations. Such traits position C. sphaeroides f. sp. denitrificans str. IL106 as a potential player in maintaining ecosystem balance, especially in environments where denitrification processes are critical for nutrient cycling." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 39723 CP147414.1 Bac0001205 Veillonella atypica "Veillonella atypica is a gram-negative, coccoid-shaped microbe that thrives in temperatures ranging from 25°C to 37°C, placing it in the mesophilic category. This microbe is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds and using them as its energy source. V. atypica produces energy through fermentation, specifically by converting glucose into lactate and acetate. V. atypica can be found in various body sites, including the oral cavity, respiratory tract, gastrointestinal tract, and female reproductive tract, of multiple species. Its ability to colonize these diverse environments is likely due to its adaptability to different temperatures, pH levels, and oxygen levels. V. atypica is an obligate anaerobe, meaning it cannot survive in the presence of oxygen. This is likely due to the fact that it lacks superoxide dismutase, an enzyme that helps protect against oxygen radicals. In anaerobic environments, V. atypica is able to metabolize carbohydrates and produce energy through fermentation. Despite being an obligate anaerobe, V. atypica has been found to be closely associated with the oral flora of humans, where it coexists with other microorganisms that are capable of producing oxygen. This suggests that V. atypica may have developed mechanisms to survive in environments with low oxygen levels, such as the dental plaque. Veillonella atypica plays a crucial role in the human microbiome, contributing to the breakdown of complex carbohydrates and influencing the composition of oral flora. Additionally, studies have linked V. atypica to the development of dental caries and other oral diseases." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella atypica Negative Anaerobe oral cavity 39777 UHIF00000000.1 Bac0001206 Veillonella dispar str. DNF00926 "Veillonella dispar str. DNF00926 is a Gram-negative anaerobic bacterium primarily found in the oral cavity, specifically within subgingival plaque. This organism is notable for its ability to thrive in environments devoid of oxygen, reflecting its adaptation to the anaerobic conditions commonly present in the deeper layers of oral biofilms. ↵↵As a member of the genus Veillonella, V. dispar plays a role in the complex microbial community of the oral microbiome, potentially contributing to the metabolic processes that occur in subgingival plaque. This environment is characterized by the presence of various microbial species, which interact synergistically to influence oral health and disease dynamics. ↵↵The presence of V. dispar in dental plaque suggests its involvement in the fermentative metabolism of carbohydrates, leading to the production of short-chain fatty acids, which may have implications for oral and systemic health. Understanding the specific metabolic pathways and interactions of V. dispar could provide insights into the microbial ecology of the oral cavity and its influence on periodontal health. Further studies focusing on the ecological roles of this bacterium could enhance our understanding of microbial interactions in subgingival environments, potentially offering new perspectives on oral health management strategies." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella dispar Negative Anaerobe oral cavity; subgingival plaque 39778 LSDO00000000.1 Bac0001207 Thermodesulforhabdus norvegica Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Thermodesulforhabdaceae Thermodesulforhabdus Thermodesulforhabdus norvegica anaerobic 39841 FOUU00000000.1 Bac0001208 Legionella moravica Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella moravica 39962 UGOG00000000.1 Bac0001209 Streptococcus equi subsp. zooepidemicus "Streptococci are non-motile, Gram-positive cocci with widely varying pathogenic potential that occur in pairs or chains. S.equi is the causative agent of strangles, the most common respiratory infectious disease of horses. It is characterized by prominent swelling of the throat lymph nodes and impaired breathing. The symptoms are severe, complications are common and, at present, there is no effective treatment or vaccine for the disease. The virulent strain 4047 (ST-179 by MLST) was isolated from a horse with strangles in the New Forest, England in 1990, and compared with another equine-isolated bacterium S.zooepidemicus H70.In comparison with S.zooepidemicus, the equine-restricted S.equi appears to have lost ancestral functions, including some involved in catabolic metabolism, transport and the cell envelope, and gained some new functions via mobile genetic elements (MGE) to be able to exploit a new environmental niche. 16.4% of the S.equi genome is composed of MGE while only 7.5% of the S.zooepidemicus is MGE. These MGEs encode virulence factors including 4 prophages that are more related to those found in the human pathogen S.pyogenes than they are to each other, suggesting a common phage pool among the Streptococci. One of the integrative conjugative elements in the S.equi genome could produce siderophores, which have been demonstrated to be required in S.equi for the production of a secreted molecule which enhances the ability of S.equi to acquire iron. This locus was present in a number of S.equi isolates, but in none of the diverse collection of S. zooepidemicus isolates examined. Given the importance of iron acquisition to other streptococcal pathogens, this acquisition may have contributed significantly to the increased pathogenesis of this Streptococcus (modified from PubMed 19325880). (HAMAP: STRE4)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi H70 Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Homo sapiens Pairs-Chains Nonsporulating No 40041 NZ_LS483325.1 Bac0001210 Acinetobacter johnsonii str. IC001 "Acinetobacter johnsonii str. IC001 is a Gram-negative bacterium characterized by its aerobic metabolism and distinct ecological niche within the ATCC skin microbiome and guano environments. This strain is part of the diverse Acinetobacter genus, which is known for its metabolic versatility and adaptability to various habitats. The presence of A. johnsonii str. IC001 in the skin microbiome suggests potential roles in maintaining skin homeostasis, although specific interactions with host systems remain to be fully elucidated.↵↵The ecological significance of A. johnsonii str. IC001 may extend beyond its role in skin microbiota, as its occurrence in guano indicates an ability to thrive in nutrient-rich environments that are high in organic matter. This adaptability could highlight its potential contribution to nutrient cycling within these ecosystems, where it may participate in the decomposition of organic material and influence microbial community dynamics. Furthermore, the presence of this strain in diverse habitats underscores the potential for studying its metabolic pathways and interactions with other microorganisms, which could provide insights into its ecological roles and applications in biotechnology. Overall, A. johnsonii str. IC001 serves as an intriguing model for understanding the complexities of microbial interactions in both skin and guano ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe ATCC skin microbiome; guano 40214 NZ_CP022299.1 Bac0001211 Acinetobacter johnsonii "Acinetobacter johnsonii is a gram-negative, coccobacillus-shaped bacterium that thrives in moderate temperatures, making it mesophilic. As a chemoheterotroph, it derives energy and carbon from organic compounds, utilizing a variety of carbon sources for growth. This microbe is typically found in diverse environments, including the skin, respiratory tract, and gastrointestinal tract of humans, as well as in soil and water ecosystems. Characterized by its robust adaptability, *A. johnsonii* plays a notable role in human health and the environment. In humans, it is frequently discovered as part of the normal flora, particularly in healthy individuals’ skin and mucosal surfaces. However, it can also be an opportunistic pathogen, especially in immunocompromised patients, where it can be implicated in infections ranging from urinary tract infections to pneumonia. The bacterium is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions, which aids in its survival across various host environments and contributes to its pathogenic potential. In terms of environmental significance, *Acinetobacter johnsonii* can degrade various pollutants, showcasing its utility in bioremediation efforts. Its ability to adapt to different habitats, coupled with a complex metabolic repertoire, enables it to participate actively in nutrient cycling. This microbe has also gained attention in microbiology research due to its emerging resistance to multiple antibiotics, raising concerns about its role in healthcare-associated infections and prompting investigations into its genomic and resistance mechanisms. Overall, *A. johnsonii* is a versatile microbe that reflects the intricate relationships between human health and microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe ATCC skin microbiome; guano 40214 UFRV00000000.1 Bac0001212 Acinetobacter junii str. SC22 "Acinetobacter junii str. SC22 is a Gram-negative bacterium characterized as an aerobic organism. This strain is part of the broader Acinetobacter genus, which is recognized for its environmental versatility and ability to thrive in diverse habitats. The Gram-negative classification indicates that this microbe possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of many bacteria within this group and may influence its interactions with various environments and host organisms.↵↵As an aerobe, Acinetobacter junii str. SC22 requires oxygen for its metabolic processes, suggesting that it is adapted to environments where oxygen is readily available. This trait could imply a potential prevalence in aerobic niches, such as soil or water, where it may play a role in nutrient cycling or organic matter degradation. The ability to utilize oxygen might also grant this strain advantages in competitive environments, allowing it to outcompete anaerobic organisms for resources.↵↵Overall, Acinetobacter junii str. SC22 exemplifies the adaptive strategies of its genus, particularly in oxygen-rich environments, which could be relevant for its ecological role in microbial communities where it contributes to the degradation of organic compounds and nutrient turnover. Understanding the traits of this strain further enhances the knowledge of microbial diversity and function within its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 QEWH00000000.1 Bac0001213 Acinetobacter junii "Acinetobacter junii is a gram-negative, coccoid-shaped bacterium that thrives in mesophilic temperature ranges (20-45°C), exhibiting chemotrophic metabolism. This microbe is classified as a facultative anaerobe, allowing it to adapt to various oxygen conditions. Acinetobacter junii is found in diverse body sites, including the skin, respiratory tract, and urinary tract, which highlights its ecological versatility. The gram-negative nature of Acinetobacter junii means its cell wall is composed of a thin peptidoglycan layer surrounded by an outer membrane, contributing to its resilience against environmental stressors and certain antibiotics. The coccoid shape allows it to form clusters, facilitating its survival in various habitats. Being mesophilic, it is well-suited for colonizing human environments, as it can grow optimally at body temperature. As a facultative anaerobe, Acinetobacter junii can switch between aerobic respiration and fermentation, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This adaptability is crucial for its survival on human skin or in clinical settings, where the availability of oxygen can vary significantly. Furthermore, Acinetobacter junii is recognized for its ability to develop resistance to multiple antibiotics, making it a concern in medical settings, especially in immunocompromised patients. Its potential to acquire resistance genes through horizontal gene transfer adds to its relevance in the context of emerging infectious diseases. This microbe has also been studied for its biotechnological applications, particularly in bioremediation processes due to its capability to degrade environmental pollutants. The duality of Acinetobacter junii as a harmless skin commensal and a potential pathogen underscores its importance in both clinical microbiology and environmental studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 NZ_CP078043.1 Bac0001214 Acinetobacter radioresistens str. APH1 "Acinetobacter radioresistens str. APH1 is a Gram-negative bacterium characterized as an aerobic organism. This strain is notable for its remarkable resilience to ionizing radiation, which distinguishes it from many other members of the Acinetobacter genus. Gram-negative bacteria are typically recognized for their thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence their interactions with the environment and other organisms.↵↵As an aerobe, Acinetobacter radioresistens str. APH1 requires oxygen for its metabolic processes, positioning it within environments where aerobic respiration is feasible. The ability to thrive in oxygenated conditions may facilitate its adaptability in various ecological niches, potentially including soil and water systems where oxygen availability is prevalent.↵↵The unique radiation resistance of this strain suggests potential applications in bioremediation and biotechnology, particularly in environments contaminated with radioactive materials. Understanding the mechanisms underlying its resistance could provide insights into microbial survival strategies in extreme conditions, highlighting the broader implications of microbial resilience in ecological and industrial contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter radioresistens Negative Aerobe 40216 VFBM00000000.1 Bac0001215 Streptomyces nodosus str. ATCC 14899 "Streptomyces nodosus str. ATCC 14899 is a Gram-positive actinobacterium characterized by its filamentous growth and complex life cycle. This strain thrives optimally at a temperature of 29.0°C, which aligns with the typical environmental conditions found in soil habitats where members of the genus Streptomyces are commonly isolated. Known for their role in natural antibiotic production, species within this genus, including S. nodosus, contribute significantly to the microbial diversity of soil ecosystems and are vital for nutrient cycling.↵↵The filamentous morphology of S. nodosus str. ATCC 14899 allows it to efficiently colonize substrates and access nutrients, while its Gram-positive cell wall structure, characterized by a thick peptidoglycan layer, contributes to its resilience and adaptability in various environmental conditions. This strain's ability to produce a range of bioactive compounds may facilitate interactions with other microorganisms, potentially influencing community dynamics in its native habitat.↵↵Overall, the traits of S. nodosus str. ATCC 14899 underscore its ecological role in soil environments, where it may engage in complex interactions with other soil-dwelling microbes, thereby contributing to soil health and fertility. The production of secondary metabolites, including antibiotics, suggests that this strain may also play a role in shaping microbial community structures through competitive exclusion and other ecological strategies." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nodosus Positive 29 mesophilic 40318 NZ_CP009313.1 Bac0001216 Stenotrophomonas maltophilia "Stenotrophomonas maltophilia is a Gram-negative, rod-shaped bacterium that thrives in a wide range of temperatures, typically between 15°C and 37°C, categorizing it as a mesophilic organism. This microbe is a facultative chemoheterotroph, meaning it can utilize both organic compounds and inorganic substances as energy sources. S. maltophilia has a respiratory type of metabolism, generating energy through the process of oxidative phosphorylation. This bacterium can be found in various body sites, including the respiratory, gastrointestinal, and genitourinary tracts, as well as skin and soft tissue infections. S. maltophilia is an obligate aerobe, requiring the presence of oxygen to survive and grow. It is also a facultative anaerobe, able to tolerate low oxygen levels, but can grow more rapidly in the presence of oxygen. S. maltophilia is known for its ability to colonize and persist in a variety of environments, including soil, water, and surfaces. It is often found as a contaminant in medical settings, and can cause opportunistic infections in hospitalized patients. In addition to its versatility and adaptability, S. maltophilia has also been studied for its potential to produce antibiotics and other bioactive compounds. Its ability to thrive in diverse environments and its possible applications in biotechnology make it a fascinating microbe worthy of further research and exploration." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 JZIW00000000.1 Bac0001217 Stenotrophomonas maltophilia str. Sm46PAILV "Stenotrophomonas maltophilia str. Sm46PAILV is a Gram-negative, rod-shaped bacterium that thrives in various habitats and exhibits aerobic growth. This organism is part of a genus known for its environmental versatility, often found in aqueous environments, soil, and on plant surfaces, suggesting its adaptability to diverse ecological niches. ↵↵As an aerobic microbe, Stenotrophomonas maltophilia str. Sm46PAILV requires oxygen for its metabolic processes, which aligns with its presence in environments rich in oxygen availability. The rod shape of this bacterium is a common morphology among many environmental bacteria, facilitating mobility and colonization in its habitats.↵↵Given its broad habitat range, this strain may play a role in nutrient cycling and interactions with other microorganisms in its ecosystem. The ecological significance of Stenotrophomonas maltophilia str. Sm46PAILV could extend to its involvement in bioremediation processes, as members of this genus are known to degrade various organic compounds. Further studies could elucidate its potential contributions to ecological balance and its interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 LYVJ00000000.1 Bac0001218 Legionella tucsonensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella tucsonensis microaerophile 40335 LNZA00000000.1 Bac0001219 Acinetobacter sp. CIP-A165 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP-A165 40373 APOK00000000.1 Bac0001220 Mycoplasma mycoides subsp. capri Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides 40477 NZ_LS483510.1 Bac0001221 Ruminococcus bromii "Ruminococcus bromii is a gram-positive, rod-shaped bacterium that belongs to the family Clostridiaceae. It is a thermophilic microbe, thriving in temperatures ranging from 37°C to 45°C, making it a common inhabitant of the human gut and rumen of ruminant animals. As a chemoheterotroph, R. bromii obtains its energy by breaking down complex carbohydrates and fiber into simpler molecules, which it uses to fuel its metabolic processes. R. bromii is a strict anaerobe, meaning it requires a complete absence of oxygen to survive and reproduce. In its natural environment, it thrives in the absence of oxygen, where it can utilize its anaerobic metabolism to generate energy. The bacterium produces energy through the fermentation of polysaccharides, releasing short-chain fatty acids, such as acetate, propionate, and butyrate, as byproducts. As a gut commensal, R. bromii is found in the intestines of humans and various animal species, where it plays a crucial role in the breakdown and utilization of dietary fiber. Its ability to ferment complex carbohydrates allows it to contribute to the production of short-chain fatty acids, which are essential for the health and function of the host gut. R. bromii is also a known inhabitant of the rumen of ruminant animals, such as cows and sheep, where it helps to break down and extract nutrients from plant-based feed. Its ability to ferment cellulose and other complex carbohydrates makes it an important component of the rumen microbiome. In addition to its role in the gut and rumen, R. bromii has been found to inhabit various other body sites, including the skin, respiratory tract, and genitourinary tract. Its ability to thrive in diverse environments and adapt to changing conditions makes it a resilient and widespread microbe. Despite its widespread distribution, R. bromii remains a relatively understudied microbe, with ongoing research aimed at understanding its metabolic processes and potential applications in fields such as agriculture and human health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bromii Positive Cocci Anaerobe feces; rectal mucosa 40518 NPHY00000000.1 Bac0001222 Ruminococcus sp. YE282 "Ruminococcus sp. YE282 is a Gram-positive, coccoid-shaped anaerobic bacterium predominantly found in feces and associated with the rectal mucosa of its host. As a member of the genus Ruminococcus, this microbe plays a significant role in the microbial ecosystem of the gastrointestinal tract, particularly in the fermentation of complex carbohydrates. The anaerobic nature of Ruminococcus sp. YE282 suggests its adaptation to low-oxygen environments, which is characteristic of the intestinal milieu.↵↵The presence of Ruminococcus sp. YE282 in fecal matter indicates its potential involvement in the breakdown of dietary fibers, contributing to the overall process of digestion and nutrient absorption within the host. This bacterium may also participate in the production of short-chain fatty acids, which are beneficial for gut health and can influence the host's metabolic processes.↵↵Further research could elucidate the specific interactions of Ruminococcus sp. YE282 with other microbial species in the gut, as well as its potential role in maintaining gut homeostasis. Understanding its functional capabilities could provide insights into the complex dynamics of gut microbiota and their implications for host health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. YE282 Positive Cocci Anaerobe feces; rectal mucosa 40518 FMUV00000000.1 Bac0001223 Blautia obeum "Blautia obeum is a Gram-positive, coccobacillus-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites across different species, including the gastrointestinal tract, respiratory tract, and skin. As an Obligate Anaerobe, Blautia obeum requires a strict anaerobic environment to survive, which is reflected in its presence in low-oxygen areas of the human body.The Gram-positive characteristic of Blautia obeum indicates that it has a thick peptidoglycan layer in its cell wall, providing it with a robust structure. Its coccobacillus shape, which is intermediate between cocci and bacilli, allows for efficient nutrient uptake and interaction with its surroundings. As a mesophilic microbe, Blautia obeum grows best in moderate temperatures, typically between 20-45°C, which is suitable for its habitat in the human body. As a Chemoheterotroph, Blautia obeum relies on chemical reactions to obtain energy and organic compounds from its environment, rather than producing its own through photosynthesis or other means. This mode of nutrition allows it to thrive in nutrient-rich environments, such as the gut, where it can feed on a variety of organic substrates.Blautia obeum plays a significant role in the human microbiome, particularly in the gut, where it contributes to the breakdown and fermentation of complex carbohydrates. Its presence has been linked to various health outcomes, and research has shown that it can produce short-chain fatty acids, which have anti-inflammatory properties and can influence the host's immune system." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QRVV00000000.1 Bac0001224 Xenorhabdus bovienii str. CS03 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 40576 NZ_FO818638.1 Bac0001225 Xenorhabdus beddingii str. DSM 4764 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus beddingii 40578 MUBK00000000.1 Bac0001226 Bifidobacterium sp. Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. Anaerobe gastrointestinal tract; heart 41200 DPDO00000000.1 Bac0001227 Ewingella americana Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Ewingella Ewingella americana 41202 UGGO00000000.1 Bac0001228 Desulfotomaculum sp. Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Desulfotomaculum Desulfotomaculum sp. 41211 DMZI00000000.1 Bac0001229 Brevundimonas vesicularis Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas vesicularis aerobic 41276 NZ_CP022048.2 Bac0001230 Rippkaea orientalis PCC 8801 "Rippkaea orientalis PCC 8801 is a Gram-negative, coccoid-shaped bacterium that occurs as single cells and exhibits facultative anaerobic growth. This aquatic microbe is part of the diverse community of microorganisms found in freshwater environments, where it likely plays a role in nutrient cycling and interactions with other microbial species. Its ability to thrive in both the presence and absence of oxygen suggests a versatile metabolic capacity that may enable it to adapt to varying environmental conditions.↵↵Rippkaea orientalis PCC 8801's coccoid morphology and solitary arrangement may influence its interactions with surrounding microorganisms, potentially affecting its nutrient uptake and competitive strategies in the aquatic habitat. The organism's facultative nature is particularly noteworthy, as it may utilize different metabolic pathways depending on the availability of oxygen, thus enhancing its ecological fitness. Overall, the traits of Rippkaea orientalis PCC 8801 suggest that it occupies a specialized niche within aquatic ecosystems, contributing to the complexity and functionality of microbial communities in these environments." Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Rippkaea Rippkaea orientalis Negative Cocci No 1 2 Facultative Mesophilic Aquatic Free living Singles 41431 NC_011721.1 Bac0001231 Acidianus brierleyi Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus brierleyi 41673 NZ_CP029289.2 Bac0001232 Azoarcus communis str. TSPY31 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Parazoarcus Parazoarcus communis 41977 NZ_CP022187.1 Bac0001233 Ruminococcus sp. "Ruminococcus sp. is a Gram-positive, nonsporulating bacterium primarily found within the intestinal microflora of herbivorous animals, particularly ruminants such as cows and sheep. As a chemoheterotroph, it derives its energy by fermenting complex carbohydrates, which are abundant in the diet of these animals. This fermentative metabolism allows Ruminococcus sp. to play a pivotal role in breaking down fibrous plant materials, aiding in the digestion processes of its hosts. The ecological niche of Ruminococcus sp. is significant, as it contributes to the overall health and efficiency of the ruminant digestive system. By facilitating the fermentation of polysaccharides into short-chain fatty acids—especially acetate, propionate, and butyrate—this microbe not only provides energy for the host but also promotes a healthy gut environment. The anaerobic nature of Ruminococcus sp. allows it to thrive in the oxygen-depleted conditions of the rumen, further emphasizing its specialized adaptation to this habitat. Additionally, Ruminococcus sp. is noted for its potential in the development of probiotics and its contribution to agricultural sustainability. By improving the efficiency of nutrient absorption and promoting optimal fermentation, it can enhance livestock production and reduce methane emissions—a critical factor in combating climate change. Thus, Ruminococcus sp. showcases the intricate relationships within the gut microbiota and underscores the importance of microbial communities in agricultural ecosystems." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. Positive Cocci No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Nonsporulating 41978 DMIF00000000.1 Bac0001234 Agromyces fucosus str. CCUG 35506 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces fucosus aerobic 29 mesophilic 41985 SDPO00000000.1 Bac0001235 Actinosynnema pretiosum str. X47 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinosynnema Actinosynnema pretiosum 42197 NZ_CP023445.1 Bac0001236 Streptomyces acidiscabies str. NCPPB 4445 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces acidiscabies 42234 JPPY00000000.1 Bac0001237 Streptomyces acidiscabies Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces acidiscabies 42234 BCMK00000000.1 Bac0001238 Streptomyces diastatochromogenes str. DSM 40608 "Streptomyces diastatochromogenes strain DSM 40608 is a Gram-positive, spore-forming bacterium that thrives optimally at a temperature of 29.0°C. As a member of the genus Streptomyces, this strain is characterized by its filamentous growth and the ability to produce a wide array of secondary metabolites, which are of significant interest in biotechnological and pharmaceutical applications.↵↵The Gram-positive nature of S. diastatochromogenes indicates that it possesses a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and resilience in various environments. Its spore-forming capability allows it to survive adverse conditions, making it well-suited for diverse ecological niches. The optimal growth temperature of 29.0°C suggests that this organism may inhabit environments that are warm but not extreme, potentially including soil or decaying organic matter where it can play a role in nutrient cycling.↵↵Understanding the growth conditions and physiological traits of S. diastatochromogenes may provide insights into its ecological functions, particularly its role in decomposing organic materials and its potential contributions to soil health and microbial diversity. Furthermore, the secondary metabolites produced by this strain could have implications for natural product discovery, emphasizing the importance of studying such microorganisms in the context of environmental microbiology and biotechnology." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces diastatochromogenes Positive 29 mesophilic spore-forming 42236 MCGQ00000000.1 Bac0001239 Eubacterium ruminantium Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ruminantium 42322 FUXA00000000.1 Bac0001240 Shigella flexneri 2a "Shigella flexneri 2a is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles and is characterized as a nonsporulating organism. This microbe thrives optimally at a temperature of 37.0 °C, which corresponds to the average human body temperature, suggesting its adaptation to a host-associated habitat. As a chemoorganotroph, S. flexneri 2a derives its energy from organic compounds, allowing it to metabolize a variety of substrates available within its host environment. ↵↵Being facultative, this bacterium can grow in both aerobic and anaerobic conditions, which further enhances its survival and adaptability in various host tissues. The ability to thrive in diverse oxygen levels may allow S. flexneri 2a to exploit different niches within the host, potentially contributing to its persistence in the gastrointestinal tract. ↵↵Overall, the combination of its specific traits indicates that S. flexneri 2a has evolved to effectively occupy a niche that is closely linked to human hosts, relying on both the temperature and the organic substrates found within them for its metabolic processes. This adaptation underscores the intricate relationships that exist between pathogens and their hosts, as well as the potential for such microbes to exploit the host's physiological conditions for survival." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 42897 UDPU00000000.1 Bac0001241 Cereibacter azotoformans str. KA25 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter azotoformans 43057 QAOT00000000.1 Bac0001242 Tissierella praeacuta Bacillati Bacillota Tissierellia Tissierellales Tissierellaceae Tissierella Tissierella praeacuta 43131 UHHZ00000000.1 Bac0001243 Tissierella creatinini str. BN11 Bacillati Bacillota Tissierellia Tissierellales Tissierellaceae Tissierella Tissierella creatinini anaerobic 43143 SUSS00000000.1 Bac0001244 Pseudomonas alcaligenes Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Aquipseudomonas Aquipseudomonas alcaligenes 43263 QJRX00000000.1 Bac0001245 Mycolicibacterium peregrinum str. TRL0025866 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium peregrinum environment 43304 NCSV00000000.1 Bac0001246 Mycolicibacterium peregrinum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium peregrinum environment 43304 LQPP00000000.1 Bac0001247 Halanaerobium saccharolyticum str. MA284_T2 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium saccharolyticum No 1 Anaerobic Chemoheterotroph Mesophilic Nonsporulating 43595 SNWX00000000.1 Bac0001248 Halanaerobium saccharolyticum str. MSL 7 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium saccharolyticum No 1 Anaerobic Chemoheterotroph Mesophilic Nonsporulating 43595 SNXX00000000.1 Bac0001249 Halanaerobium saccharolyticum str. MSL9.2 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium saccharolyticum No 1 Anaerobic Chemoheterotroph Mesophilic Nonsporulating 43595 SODA00000000.1 Bac0001250 Pseudoalteromonas citrea Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas citrea 43655 PNCK00000000.1 Bac0001251 Pseudoalteromonas luteoviolacea str. IPB1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 43657 MAUJ00000000.1 Bac0001252 Pseudoalteromonas rubra Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas rubra 43658 JXYA00000000.1 Bac0001253 Pseudoalteromonas tetraodonis str. GFC Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas tetraodonis 43659 NZ_CP011041.1 Bac0001254 Shewanella benthica Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella benthica 43661 NZ_LS483452.1 Bac0001255 Pseudoalteromonas piscicida Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 PNEG00000000.1 Bac0001256 Pseudoalteromonas piscicida str. DE1-A Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 NZ_CP031759.1 Bac0001257 Pseudoalteromonas piscicida str. JCM 20779 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 NZ_CP011924.1 Bac0001258 Brachybacterium faecium Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium faecium 43669 QFNX00000000.1 Bac0001259 Rothia mucilaginosa "Rothia mucilaginosa is a gram-positive, coccoid-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites, including the skin, respiratory tract, and gastrointestinal tract, of humans and other species. As a chemoheterotroph, R. mucilaginosa relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. Its gram-positive cell wall and coccoid shape allow it to maintain its structure and withstand environmental stresses. The microbe's mesophilic temperature preference enables it to adapt to a wide range of environments, from the human body to various ecological niches. As a facultative anaerobe, R. mucilaginosa can survive in both oxygen-rich and oxygen-poor conditions, making it a versatile microorganism. Its ability to colonize different body sites in various species highlights its adaptability and capacity to coexist with diverse host organisms. Notably, R. mucilaginosa has been implicated in oral and respiratory infections, and its role in the human microbiome is still being explored, with recent studies suggesting that it may play a role in the breakdown of complex sugars and the production of anti-inflammatory compounds, and it has also been found to produce a range of enzymes, including amylases, lipases, and proteases, which enable it to degrade a variety of organic substrates." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa Positive Cocci Yes 1 1 Microaerophile Mesophilic HostAssociated Free living Nonsporulating 43675 PKIQ00000000.1 Bac0001260 Metallosphaera sedula str. SARC-M1 "Metallosphaera sedula str. SARC-M1 is a Gram-negative, aerobic coccus that typically exists as single cells. This microorganism thrives at an optimal temperature of 70.0°C, indicating its adaptation to specialized habitats that can support high-temperature environments. The combination of its coccoid shape and aerobic metabolism suggests a role in nutrient cycling within extreme environments, potentially contributing to biogeochemical processes in hot springs or similar thermal niches.↵↵The specific adaptations of M. sedula str. SARC-M1 to high temperatures and aerobic conditions may grant it a competitive advantage in its specialized habitat, allowing it to exploit resources that are less accessible to mesophilic or anaerobic microorganisms. Understanding the metabolic pathways and growth characteristics of this microbe could provide insights into the ecological roles of thermophilic bacteria in extreme habitats, as well as their potential applications in biotechnology, such as in bioremediation or bioenergy production." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles 43687 NZ_CP012176.1 Bac0001261 Metallosphaera sedula str. ARS120-1 "Metallosphaera sedula str. ARS120-1 is a Gram-negative, aerobic coccoid bacterium that typically exists as single cells. This organism thrives at an optimal temperature of 70°C, indicating its adaptation to high-temperature environments, likely within specialized habitats such as hot springs or geothermal areas. The coccal shape and solitary arrangement are characteristic of this strain, which enables it to navigate its thermal niches effectively.↵↵As an aerobic organism, M. sedula str. ARS120-1 relies on oxygen for its metabolic processes, which suggests a potential role in biogeochemical cycling in its native ecosystem. While specific ecological interactions remain to be fully elucidated, the unique combination of traits—high-temperature tolerance, aerobic metabolism, and Gram-negative cell structure—positions this microbe as a potentially important player in extreme environments where few other organisms can survive. Understanding its physiology and ecological role could provide insights into microbial life in extreme conditions and the mechanisms of adaptation to such specialized niches." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles 43687 NZ_CP012174.1 Bac0001262 Metallosphaera sedula str. ARS120-2 "Metallosphaera sedula str. ARS120-2 is a Gram-negative coccoid bacterium that exhibits a unique adaptation to specialized habitats, thriving optimally at a temperature of 70.0°C. This strain is characterized by its single-cell arrangement, which distinguishes it from other bacterial forms that may exhibit clustering or chaining. As an obligate aerobe, M. sedula str. ARS120-2 requires the presence of oxygen for its metabolic processes, indicating a dependency on oxidative phosphorylation for energy generation.↵↵The specialized habitat of this organism suggests a niche adaptation, potentially to extreme environments where temperature and oxygen levels may fluctuate significantly. Its ability to thrive at high temperatures indicates a remarkable thermal stability of its cellular components, which may provide insights into the biochemical pathways and mechanisms that allow for growth under such conditions. ↵↵Understanding the physiological traits of M. sedula str. ARS120-2 not only enhances our knowledge of extremophiles but may also offer implications for biotechnological applications, particularly in bioleaching processes or bioremediation strategies in high-temperature environments. This bacterium exemplifies how life can adapt to seemingly inhospitable conditions, reflecting the resilience and diversity of microbial life on Earth." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles 43687 NZ_CP012175.1 Bac0001263 Prescottella equi str. DSSKP-R-001 "Prescottella equi strain DSSKP-R-001 is a Gram-positive coccus that exhibits a facultative anaerobic metabolism, utilizing a chemoheterotrophic lifestyle. This microbe is characterized by its nonsporulating nature, which suggests a reliance on stable environmental conditions for survival and growth. ↵↵The habitat of Prescottella equi str. DSSKP-R-001 spans multiple environments, indicating its potential versatility and adaptability in various ecological niches. As a facultative anaerobe, it can thrive in both the presence and absence of oxygen, allowing it to exploit a range of substrates for energy in diverse conditions. This metabolic flexibility may contribute to its ability to inhabit varied habitats, including those with fluctuating oxygen levels.↵↵The presence of this strain in multiple habitats may reflect its role in microbial communities, possibly aiding in organic matter decomposition or nutrient cycling processes. Understanding the ecological role of Prescottella equi str. DSSKP-R-001 could provide insights into the dynamics of microbial interactions in its environments, as well as its potential contributions to ecosystem functioning. Further research may elucidate its specific interactions with other microorganisms and its overall impact within its ecological contexts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Prescottella Prescottella equi Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating Animal 43767 NZ_CP027794.1 Bac0001264 Corynebacterium propinquum "Corynebacterium propinquum is a Gram-positive, rod-shaped bacterium classified under mesophiles, making it thrive optimally at moderate temperatures. It is a heterotrophic organism that primarily derives its energy from organic compounds, feeding on complex materials within its environment. C. propinquum is typically found in various body sites, including human skin, respiratory tract, and other mucosal surfaces. This microbe is classified as a facultative anaerobe, meaning it can grow in the presence or absence of oxygen, although it generally prefers oxygen-rich environments for optimal metabolic activity. The Gram-positive nature of C. propinquum indicates a thick peptidoglycan layer in its cell wall, which is characteristic of bacteria that can withstand harsh conditions. Its rod shape contributes to its ability to form characteristic palisades or Chinese letter arrangements when viewed under a microscope, a feature that can aid in its identification. As a mesophile, it grows best at temperatures around 30-37 degrees Celsius, making it well-suited for life on human hosts. In terms of its ecological role, C. propinquum participates in the normal microbiota of humans, playing a role in skin health and acting as a barrier against more harmful pathogens. While generally considered non-pathogenic, there are instances where it may be associated with opportunistic infections, particularly in immunocompromised individuals. Furthermore, studies suggest C. propinquum may produce bioactive compounds, potentially contributing to its role in maintaining microbial balance on human skin and mucosal surfaces. Its fascinating adaptability and interactions with human hosts highlight the intricate relationships that exist within our microbiome." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium propinquum Positive Facultative anaerobe 43769 QFPU00000000.1 Bac0001265 Syntrophus gentianae Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus gentianae anaerobic 43775 FOBS00000000.1 Bac0001266 Halobaculum gomorrense Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum gomorrense 43928 FQWV00000000.1 Bac0001267 Crocosphaera subtropica ATCC 51142 "Crocosphaera subtropica ATCC 51142 is a Gram-negative, coccoid bacterium that typically exists as single cells in aquatic environments. This species is characterized by its facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor conditions. The ability to adapt to varying oxygen levels suggests a versatile ecological role, potentially contributing to nutrient cycling and ecosystem functioning in aquatic habitats. ↵↵As a member of the microbial community, Crocosphaera subtropica may play a significant part in the dynamics of primary production and organic matter decomposition. Its presence in diverse aquatic ecosystems highlights its potential importance in biogeochemical processes, particularly in subtropical regions where nutrient availability can vary. Further studies on this microbe could provide insights into its interactions within microbial consortia and its overall impact on aquatic ecosystem health and resilience." Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Crocosphaera Crocosphaera subtropica Negative Cocci No 1 2 Facultative Mesophilic Aquatic Free living Singles 43989 NC_010539.1 Bac0001268 Enterococcus pseudoavium str. CBA7133 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus pseudoavium microaerophile 44007 NNBZ00000000.1 Bac0001269 Enterococcus cecorum "Enterococcus cecorum is a Gram-positive, coccoid-shaped microbe that thrives in a broad temperature range, classified as mesophilic, with an optimal growth temperature between 25-37°C. It is a heterotroph, relying on complex organic compounds as its source of energy and carbon. As a chemoheterotroph, it produces energy through the breakdown of organic molecules, releasing carbon dioxide and water as byproducts. Enterococcus cecorum can be found on various body sites, including the skin, respiratory tract, gastrointestinal tract, and genitourinary tract, across all possible species, including humans, animals, and birds. It is an opportunistic pathogen, capable of causing infections in immunocompromised individuals. In terms of oxygen preference, Enterococcus cecorum is a facultative anaerobe, meaning it can grow in the presence or absence of oxygen. However, it prefers aerobic conditions, and its growth rate is higher in the presence of oxygen. This adaptability allows it to thrive in a wide range of environments, from skin to gut and respiratory tracts. Enterococcus cecorum is a member of the Enterococcus genus, which includes several species of bacteria that are commonly found in the human microbiome. Despite its benign nature, E. cecorum can cause infections, particularly in individuals with compromised immune systems. For instance, it has been linked to urinary tract infections, endocarditis, and bacteraemia. Furthermore, Enterococcus cecorum has been isolated from environmental samples, including soil, water, and food, highlighting its ability to adapt to various environments. Its presence in these ecosystems underscores its potential role in decomposing organic matter and recycling nutrients. In summary, Enterococcus cecorum is a versatile and opportunistic microbe that has adapted to thrive in a wide range of environments, from human hosts to diverse ecosystems. Its capacity to grow in various conditions and its ability to cause infections make it a significant player in the microbial world." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus cecorum Positive Cocci Facultative anaerobe 44008 NIBL00000000.1 Bac0001270 Mycobacterium conspicuum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium conspicuum 44010 LQOR00000000.1 Bac0001271 Thauera aromatica K172 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera aromatica facultative aerobe/anaerobe 44139 NZ_CP028340.1 Bac0001272 Bacillus thuringiensis serovar kyushuensis "Bacillus thuringiensis serovar kyushuensis is a Gram-positive, rod-shaped bacterium that is capable of sporulation and exhibits facultative anaerobic metabolism. This microbe is primarily associated with hosts, suggesting a potential role in symbiotic or pathogenic relationships within specific ecological niches. ↵↵As a member of the Bacillus genus, B. thuringiensis serovar kyushuensis shares the characteristic ability to produce spores, which allows it to survive in fluctuating environmental conditions. The facultative anaerobic nature of this bacterium indicates that it can thrive in both aerobic and anaerobic environments, potentially enhancing its adaptability to varying habitats associated with its hosts. ↵↵Bacillus thuringiensis serovar kyushuensis may play a significant role in the microbial community dynamics within its associated hosts, possibly influencing host health or contributing to biocontrol mechanisms against other microbial pathogens. This characteristic, combined with its ability to sporulate, positions it as a notable organism in studies related to microbial ecology and host-microbe interactions, warranting further investigation into its potential applications in agriculture and biotechnology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 44161 NFEF00000000.1 Bac0001273 Paenibacillus durus str. DSM 1735 "Paenibacillus durus str. DSM 1735 is a rod-shaped bacterium known for its significance in various biotechnological applications. This microorganism exhibits a Gram-positive cell wall structure, which is characteristic of the genus Paenibacillus. The rod shape of P. durus str. DSM 1735 is typical for many members of the Bacilli class, contributing to its morphological identification.↵↵This strain is notable for its resilience in diverse environmental conditions, suggesting a potential adaptability that may be beneficial in industrial processes. The rod-shaped morphology may facilitate motility and colonization, which could enhance its utility in bioremediation or as a probiotic in agriculture. The metabolic capabilities of P. durus str. DSM 1735 have been explored, indicating its potential for enzyme production, although specifics on metabolic pathways are not detailed here.↵↵Overall, the distinct rod shape and the physiological traits associated with Paenibacillus durus str. DSM 1735 underscore its potential as a valuable organism in biotechnological applications, particularly in the context of sustainable practices. Its resilience and adaptability may position it as a candidate for further study in microbial ecology, particularly in environments where such traits confer a competitive advantage." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus durus Rod 44251 NZ_CP009289.1 Bac0001274 Paenibacillus macerans str. 8244 "Paenibacillus macerans strain 8244 is a rod-shaped bacterium characterized by its distinctive morphology and potential utility in various biotechnological applications. As a member of the Paenibacillus genus, this strain exhibits traits typical of the group, such as its ability to thrive in diverse environments. ↵↵The rod shape of Paenibacillus macerans str. 8244 may contribute to its motility and surface adherence capabilities, which are key factors in its ecological interactions and potential applications in bioremediation or agriculture. This shape can facilitate nutrient uptake and colonization of substrates, which is essential for its survival and proliferation in various habitats. ↵↵While the specific metabolic pathways and environmental tolerances of strain 8244 are not detailed, members of the Paenibacillus genus are known for their ability to degrade complex organic materials, suggesting that this strain could play a role in nutrient cycling within its ecosystem. The ecological versatility of Paenibacillus macerans str. 8244 highlights the importance of this bacterium in maintaining soil health and promoting plant growth, indicating a potential benefit in sustainable agricultural practices." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus macerans Rod 44252 JMQA00000000.1 Bac0001275 Pasteurella multocida subsp. multocida "Pasteurella multocida subsp. multocida is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37°C. This organism is categorized as a facultative anaerobe, indicating its capacity to grow in both aerobic and anaerobic environments. It is primarily associated with host organisms, suggesting a close relationship with its hosts during various life stages.↵↵The ability of P. multocida subsp. multocida to exist in host-associated habitats may reflect its adaptation to the nutritional and environmental conditions found within these environments. Such adaptations facilitate its survival and potential interactions with the host's immune system. Given its optimal growth temperature aligning with that of warm-blooded animals, this subspecies is likely to exhibit specific adaptations that enhance its metabolic efficiency in physiological conditions.↵↵Understanding the ecological niche of P. multocida subsp. multocida is essential, as its facultative anaerobic metabolism may allow it to exploit diverse microenvironments within the host, thereby influencing its role in microbial communities. This adaptability not only underscores the bacterium’s ecological flexibility but may also provide insights into its potential interactions with other microbial species in host-associated environments, contributing to the dynamics of host microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 44283 NZ_CP037861.1 Bac0001276 Nitrosomonas communis Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas communis 44574 FNNH00000000.1 Bac0001277 Nitrosomonas halophila Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas halophila 44576 FNOY00000000.1 Bac0001278 Nitrosomonas ureae str. Nm4 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas ureae 44577 QAOL00000000.1 Bac0001279 Nitrosomonas ureae Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas ureae 44577 FNLN00000000.1 Bac0001280 Capnocytophaga sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. 44737 RBJR00000000.1 Bac0001281 Rhodococcus wratislaviensis str. WS3308 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus wratislaviensis 44752 QTTP00000000.1 Bac0001282 Natronobacterium gregoryi Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobacterium Natronobacterium gregoryi 44930 FORO00000000.1 Bac0001283 Halomonas venusta str. MA-ZP17-13 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella venusta 44935 NZ_CP034367.1 Bac0001284 Legionella adelaidensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella adelaidensis 45056 LNKA00000000.1 Bac0001285 Legionella donaldsonii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella donaldsonii 45060 UGOA00000000.1 Bac0001286 Legionella geestiana Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella geestiana 45065 NZ_CP041715.1 Bac0001287 Legionella gratiana Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella gratiana microaerophile 45066 UGOB00000000.1 Bac0001288 Legionella lansingensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella lansingensis microaerophile 45067 LNYI00000000.1 Bac0001289 Legionella londiniensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella londiniensis microaerophile 45068 LNYK00000000.1 Bac0001290 Legionella nautarum Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella nautarum microaerophile 45070 LNYO00000000.1 Bac0001291 Legionella quateirensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella quateirensis microaerophile 45072 UGOW00000000.1 Bac0001292 Legionella quinlivanii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella quinlivanii 45073 LNYS00000000.1 Bac0001293 Capnocytophaga haemolytica Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga haemolytica facultative aerobe/anaerobe 45243 NZ_CP014227.1 Bac0001294 Vogesella indigofera str. DSM 3303 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella indigofera 45465 RBID00000000.1 Bac0001295 Psychrobacter urativorans str. R310.10B Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter urativorans 45610 NZ_CP012709.1 Bac0001296 Streptococcus cristatus "Streptococcus cristatus is a Gram-positive, spherical-shaped microbe that thrives in the mesophilic temperature range of 25-40°C, indicating a preference for moderate temperatures. As a chemoheterotroph, this microbe obtains its energy by breaking down organic compounds, relying on external sources of carbon and energy. Its metabolism is characterized by the production of ATP through cellular respiration, primarily relying on the citric acid cycle and oxidative phosphorylation. Streptococcus cristatus is distributed throughout various body sites, including the skin, respiratory, gastrointestinal, and genitourinary tracts, as well as the oral cavity, making it a ubiquitous inhabitant of the human host. As an obligate aerobe, this microbe requires the presence of oxygen to survive and grow, which is consistent with its ability to tolerate high levels of oxygen and thrive in aerobic environments. Physically, Streptococcus cristatus presents as small, non-motile, spherical cells that typically range in diameter from 0.5-1.5 μm. Under the Gram stain, its cell walls exhibit a characteristic blue color due to the presence of peptidoglycan, which is a key component of bacterial cell walls. Notably, Streptococcus cristatus has been linked to various diseases, such as upper respiratory tract infections, skin infections, and endocarditis. Additionally, it has been used as a model organism for studying bacterial communication and biofilm formation, providing valuable insights into the complex interactions between microorganisms and their hosts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cristatus Positive Cocci Facultative anaerobe 45634 RJPU00000000.1 Bac0001297 Desulfonema ishimotonii str. Tokyo 01 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema ishimotonii anaerobic 45657 BEXT00000000.1 Bac0001298 Vibrio scophthalmi str. FP3289 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio scophthalmi 45658 MDCJ00000000.1 Bac0001299 Vibrio scophthalmi str. VS-05 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio scophthalmi 45658 NZ_CP016417.1 Bac0001300 Vibrio scophthalmi str. VS-12 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio scophthalmi 45658 NZ_CP016311.1 Bac0001301 Salinicoccus roseus str. DSM 5351 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Salinicoccus Salinicoccus roseus 45670 RKQJ00000000.1 Bac0001302 Salinicoccus roseus str. W12 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Salinicoccus Salinicoccus roseus 45670 JXII00000000.1 Bac0001303 Mammaliicoccus fleurettii "Mammaliicoccus fleurettii is a Gram-positive, cocci-shaped bacterium characterized as a facultative anaerobe. This microbe exhibits a spherical morphology, which is typical of cocci, and its Gram-positive nature suggests a thick peptidoglycan layer in its cell wall. The ability to grow in both aerobic and anaerobic conditions allows M. fleurettii to adapt to various environments, possibly influencing its ecological niches and interactions with other microorganisms.↵↵Facultative anaerobes, such as M. fleurettii, can utilize oxygen when it is available but can also switch to fermentation or anaerobic respiration in the absence of oxygen. This metabolic flexibility may confer advantages in fluctuating environments where oxygen levels are not constant, allowing the organism to thrive in diverse habitats.↵↵Understanding the physiological traits of M. fleurettii can provide insights into its potential roles in microbial communities, particularly in mammalian hosts, where it may contribute to normal microbiota or engage in diverse metabolic interactions. The unique combination of its Gram-positive structure and facultative anaerobic metabolism positions Mammaliicoccus fleurettii as an intriguing subject for further studies on microbial ecology and symbiotic relationships within mammalian environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Mammaliicoccus Mammaliicoccus fleurettii Positive Cocci Facultative anaerobe 45972 RXWZ00000000.1 Bac0001304 Pseudobutyrivibrio ruminis "Pseudobutyrivibrio ruminis is a gram-negative, rod-shaped bacterium classified as a mesophile, thriving optimally at moderate temperatures typically between 30°C and 40°C. As a chemoheterotroph, it derives energy by breaking down organic compounds, primarily found in the gut of ruminant animals such as cattle and sheep, where it plays a crucial role in the digestive process. P. ruminis is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, which is a characteristic shared among many microorganisms that inhabit the gastrointestinal tract. This bacterium is particularly known for its contribution to the fermentation of carbohydrates in the rumen, facilitating the breakdown of complex polysaccharides into short-chain fatty acids, which serve as vital energy sources for the host animal. It is also involved in the production of butyrate—a key metabolite that supports gut health and provides energy for colonocytes. The ability of Pseudobutyrivibrio ruminis to thrive in the anaerobic, nutrient-rich environment of the rumen highlights its adaptive strategies for survival and metabolic efficiency. Moreover, this microbe has been a focus of research due to its potential implications in livestock health and production efficiency. Studies have shown that manipulating the populations of ruminal microbes, including P. ruminis, may improve feed conversion ratios and reduce methane emissions, contributing to more sustainable agricultural practices. The varied interactions of Pseudobutyrivibrio ruminis with other microbial inhabitants in the rumen ecosystem underscore its ecological importance and potential for biotechnological applications in animal husbandry." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio ruminis Positive Yes 1 Anaerobe 39 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 46206 PDYH00000000.1 Bac0001305 Heyndrickxia sporothermodurans Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia sporothermodurans 46224 LQYN00000000.1 Bac0001306 [Ruminococcus] lactaris "[Ruminococcus] lactaris is a Gram-positive, cocci-shaped bacterium that is part of the diverse microbial community found in the gastrointestinal tract of ruminants. This microorganism contributes to the complex processes of fermentation and digestion within these hosts, playing a role in the breakdown of polysaccharides. The coccoid morphology of [Ruminococcus] lactaris suggests a potential adaptation to the anaerobic environment of the rumen, where it may facilitate the degradation of fibrous plant materials. ↵↵While specific metabolic pathways and interactions with other gut microbes for [Ruminococcus] lactaris have not been detailed, its Gram-positive nature indicates the presence of a thick peptidoglycan layer in its cell wall, which can influence its resilience to environmental stresses encountered in the digestive tract. This structural characteristic may also affect its interactions with the host's immune system.↵↵Research on [Ruminococcus] lactaris remains limited; however, the presence of such microbes in the rumen is crucial for efficient nutrient absorption and energy production through fermentation. Understanding the specific roles and interactions of [Ruminococcus] lactaris within the gut microbiome of ruminants could provide insights into optimizing animal health and productivity, especially considering the importance of microbial balance in digestive efficiency. This bacterium exemplifies the intricate relationships between host and microbes in the digestive process, underscoring the importance of microbial diversity in maintaining gut health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter [Ruminococcus] lactaris Positive Cocci 46228 QSQN00000000.1 Bac0001307 Anabaena sp. 90 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena sp. 90 46234 NC_019429.1 Bac0001308 Pseudomonas avellanae str. ICMP 3690 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas avellanae 46257 LKBV00000000.1 Bac0001309 Sphingobium chlorophenolicum str. NBRC 16172 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium chlorophenolicum 46429 JFHR00000000.1 Bac0001310 Parabacteroides merdae "Parabacteroides merdae is a Gram-negative, rod-shaped bacterium that thrives in a moderate temperature range, between 22°C and 37°C, categorizing it as a mesophilic microbe. This bacterium is a heterotroph, meaning it derives its energy from the breakdown of organic compounds, specifically glucose and other carbohydrates. It is also a chemoheterotroph, as it uses chemical reactions to convert its energy source into ATP. As a chemoheterotroph, P. merdae produces its energy through the process of cellular respiration, specifically aerobic respiration. This means it requires oxygen to produce energy, classifying it as an obligate aerobe. This microbe is found in various body sites across all species, including the gastrointestinal tract, skin, and respiratory tract, where it plays a crucial role in the breakdown of complex nutrients. P. merdae is known to form biofilms, complex communities of microorganisms attached to surfaces, which enable it to colonize and adapt to its environment. Its ability to form biofilms also allows it to survive in the face of antimicrobial therapy and antibiotics. In addition to its significance in the human body, P. merdae has been found to be involved in various diseases, including inflammatory bowel disease, diarrhea, and even cancer. Its role in these diseases is complex and multifaceted, and further research is needed to fully understand its contribution. Studies have also shown that P. merdae produces adhesins, molecules that allow it to attach to host cells, and has been found to induce inflammation and modulate the immune response. Its ability to interact with the host immune system makes it an important target for future research and potential therapeutic applications." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 46503 QSEF00000000.1 Bac0001311 Bacteroides stercoris "Bacteroides stercoris is an obligate anaerobe, chemoheterotroph, producing energy through fermentation, a Gram-negative bacterium with a bacillus shape, predominantly found in the human gastrointestinal tract. This microbe thrives in the warm, nutrient-rich environment of the gut, where it plays a critical role in the breakdown of complex carbohydrates and the fermentation of dietary fibers.As an obligate anaerobe, Bacteroides stercoris cannot survive in the presence of oxygen, which is a crucial aspect of its ecological niche within the human body. Its anaerobic metabolism allows it to utilize various organic compounds as energy sources, primarily relying on the fermentation of carbohydrates and proteins. This process not only fosters its growth but also contributes to the overall health of the host by producing short-chain fatty acids (SCFAs), which are beneficial for colonic health and can serve as an energy source for intestinal cells. The Gram-negative nature of Bacteroides stercoris indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which can provide it with a degree of protection against certain antibiotics and the host immune response. Its bacillus shape is characteristic of many bacteria within the Bacteroides genus, facilitating mobility and colonization in the complex environment of the gut. Beyond its metabolic functions, Bacteroides stercoris is significant in maintaining gut homeostasis. It interacts synergistically with other gut microbiota, influencing the immune system and potentially preventing the onset of gastrointestinal diseases. Furthermore, variations in the abundance of Bacteroides species, including B. stercoris, have been linked to conditions such as obesity and inflammatory bowel diseases, highlighting its role not just in digestion but also in overall health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 QSAF00000000.1 Bac0001312 Ezakiella coagulans str. DSM 20705 Bacillati Bacillota Tissierellia Ezakiella Ezakiella coagulans No 1 Anaerobic Chemoheterotroph Host Gut Nonsporulating 46507 QEKV00000000.1 Bac0001313 Geobacter sp. Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. subsurface environments 46610 PJFB00000000.1 Bac0001314 Pseudomonas agarici str. NCPPB 2472 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas agarici 46677 NZ_CP014135.1 Bac0001315 Pseudomonas caricapapayae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas caricapapayae 46678 RBOC00000000.1 Bac0001316 Leptolyngbya foveolarum Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya foveolarum 47253 QBMC00000000.1 Bac0001317 Leptolyngbya sp. Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. 47254 QBMH00000000.1 Bac0001318 Methanobrevibacter cuticularis str. DSM 11139 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter cuticularis 47311 LWMW00000000.1 Bac0001319 Hydrogenophaga pseudoflava str. DSM 1084 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga pseudoflava 47421 NZ_CP037868.1 Bac0001320 Borrelia miyamotoi str. CT13-2396 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia miyamotoi 47466 NZ_CP017136.1 Bac0001321 Borrelia miyamotoi Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia miyamotoi 47466 NZ_CP117064.1 Bac0001322 Aneurinibacillus migulanus "Aneurinibacillus migulanus is a rod-shaped bacterium belonging to the genus Aneurinibacillus. This microorganism exhibits a distinct morphology characterized by its elongated, cylindrical form, which is typical of many members within the Bacilli class. While specific growth conditions and metabolic characteristics are not detailed in the available data, rod-shaped bacteria often play significant roles in various ecological niches, typically involving nutrient cycling and decomposition processes.↵↵The rod shape of Aneurinibacillus migulanus may confer specific advantages for motility and nutrient uptake, potentially allowing it to thrive in diverse environments. In microbial ecosystems, such structural adaptations are often linked to the ability of bacteria to respond to varying environmental stresses, such as changes in nutrient availability or competition with other microorganisms.↵↵The presence of Aneurinibacillus migulanus within a microbial community may indicate an interaction with organic matter, suggesting its potential involvement in the breakdown of complex substrates. This characteristic aligns with the ecological role of many rod-shaped bacteria, which often contribute to the degradation of organic materials, thereby facilitating nutrient cycling. Further investigation into the specific metabolic pathways and ecological interactions of Aneurinibacillus migulanus could provide deeper insights into its functional role in microbial ecosystems." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Aneurinibacillus Aneurinibacillus migulanus Rod 47500 CCMJ00000000.1 Bac0001323 Pseudomonas sp. ADP Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ADP 47660 NZ_CM003636.1 Bac0001324 Bacteroides caccae "Bacteroides caccae is an obligate anaerobic, Gram-negative, rod-shaped bacterium belonging to the Bacteroidetes phylum. It is categorized as a chemoheterotroph, deriving its energy from the breakdown of organic compounds, specifically carbohydrates and proteins, in an anaerobic environment. This microbe thrives in a temperature range suitable for mesophiles, typically around 30-37°C, which aligns with the human body temperature, indicating its adaptation to the human gut environment. The shape of Bacteroides caccae is bacillus, or rod-shaped, which is characteristic of many bacteria in its genus. It is primarily found in the gastrointestinal tract of humans, where it plays a crucial role in the digestion of complex polysaccharides and the production of short-chain fatty acids, which are beneficial for gut health. Besides the gut, it can also be found in other body sites, including the oral cavity and the female genital tract, reflecting its versatility and adaptability to different environments within the human body. As a key member of the gut microbiota, Bacteroides caccae contributes to the maintenance of gut homeostasis and immune function. It participates in the fermentation of dietary fibers, producing metabolites that can influence host metabolism and immune responses. Additionally, this bacterium has been the subject of research concerning its potential role in health and disease, with emerging evidence suggesting that imbalances in its abundance may be linked to conditions such as obesity, inflammatory bowel disease, and other metabolic disorders. Its ability to metabolize diverse substrates underscores the importance of maintaining a balanced gut microbiome for overall health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe 47678 QSDW00000000.1 Bac0001325 Lacticaseibacillus rhamnosus "Lacticaseibacillus rhamnosus is a Gram-positive, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C. This species is classified as a facultative anaerobe, which indicates its ability to grow in both the presence and absence of oxygen. Lacticaseibacillus rhamnosus is found in a variety of habitats, reflecting its ecological versatility and adaptability. ↵↵The ability of Lacticaseibacillus rhamnosus to function as a facultative anaerobe allows it to exploit diverse environments, including fermented foods and the gastrointestinal tracts of humans and animals. This adaptability may contribute to its resilience and potential utility in probiotic applications, where it can promote gut health by exerting beneficial effects on the microbiome.↵↵In addition to its physiological traits, Lacticaseibacillus rhamnosus is noted for its role in fermentation processes, particularly in dairy products. Its presence in various habitats underscores its ecological significance and potential interactions within microbial communities. Given its diverse environmental presence and metabolic flexibility, Lacticaseibacillus rhamnosus may play a crucial role in maintaining microbial balance and functionality in both natural and engineered ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic Multiple Free living 47715 SDJW00000000.1 Bac0001326 Streptomyces lydicus str. WYEC 108 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lydicus 47763 NZ_CP029042.1 Bac0001327 Streptomyces lydicus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lydicus 47763 NZ_CP017157.1 Bac0001328 Lactobacillus crispatus "Lactobacillus crispatus is a type of gram-positive, rod-shaped bacterium that thrives in temperatures ranging from mesophilic to thermophilic, making it a mesophilic organism (temperature preference category). It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds in its environment, such as sugars, amino acids, and fats (metabolism and energy source). This process involves fermentation, where the microbe converts glucose into lactate, generating energy through the reduction of pyruvate (energy production). Lactobacillus crispatus is gram-positive, meaning its cell wall contains a thick peptidoglycan layer, which gives it a positive reaction when tested with Gram stain. Its rod-shaped morphology is characteristic of many Lactobacillus species, allowing for efficient colonization and adhesion to host surfaces (shape). This microbe is found in various body sites, including the skin, mucous membranes, and gastrointestinal tract of humans and animals, playing a crucial role in maintaining the balance of the microbiome (all body sites in all possible species). Lactobacillus crispatus is a facultative anaerobe, capable of growing in the presence or absence of oxygen. While it can tolerate oxygen, it prefers microaerobic conditions, where oxygen levels are low to moderate (oxygen preference). This tolerance allows it to thrive in environments with varying oxygen levels. In addition to its role in maintaining the balance of the microbiome, Lactobacillus crispatus has been shown to produce antimicrobial substances, such as bacteriocins, which can help combat pathogenic microorganisms. It also exhibits probiotic properties, contributing to the prevention of certain diseases, including urinary tract infections and vaginal infections." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYQX00000000.1 Bac0001329 Micromonospora aurantiaca "Micromonospora aurantiaca is a Gram-positive, filamentous bacterium that exhibits a rod-like shape. It is classified as a mesophile, thriving optimally at moderate temperatures, and is a chemoheterotroph, deriving its energy and carbon from organic compounds. This microbe can be found in various environments, including soil, freshwater, and marine ecosystems, indicating its adaptability to diverse ecological niches. As a facultative anaerobe, M. aurantiaca can survive in both aerobic and anaerobic conditions, allowing it to thrive in environments with fluctuating oxygen levels. The Gram-positive nature of M. aurantiaca is indicative of its thick peptidoglycan cell wall, a characteristic that provides structural integrity and resistance to certain environmental stresses. Its filamentous morphology enables the formation of a complex network, facilitating nutrient acquisition and interaction with other microorganisms in its habitat. Being mesophilic, this organism prefers moderate temperatures, generally thriving between 20°C to 45°C, which often coincides with the natural conditions of its surroundings. As a chemoheterotroph, Micromonospora aurantiaca plays a crucial role in nutrient cycling within its ecosystem, breaking down organic matter and contributing to soil health. Its ability to function as a facultative anaerobe allows it to adapt to various oxygen conditions, enhancing its survival in complex environments where oxygen levels may be inconsistent. This microbe is also recognized for its potential applications in biotechnology and agriculture, notably in the production of antibiotics and other bioactive compounds. Its ability to interact with a wide range of organic molecules positions it as a valuable resource for biotechnological innovations, particularly in drug development and sustainable agricultural practices." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora aurantiaca (nom. illeg.) Positive Rod No 1 1 Aerobe Mesophilic Multiple Free living Sporulating 47850 FMHX00000000.1 Bac0001330 Micromonospora aurantiaca str. ATCC 27029 "Micromonospora aurantiaca str. ATCC 27029 is a Gram-positive, rod-shaped bacterium distinguished by its ability to sporulate and its aerobic metabolism. This species is part of the Micromonospora genus, which is known for its ecological versatility, thriving in various habitats. ↵↵As an aerobic organism, M. aurantiaca str. ATCC 27029 requires oxygen for its growth and metabolic processes, positioning it within environments where oxygen is readily available. The ability to sporulate suggests that this strain can withstand adverse conditions by forming spores, which are resistant structures that allow for survival in fluctuating environmental circumstances.↵↵The diverse habitat range of M. aurantiaca indicates its adaptability and potential roles in different ecological niches, possibly contributing to soil health and nutrient cycling. Its sporulation capability may also play a crucial role in its survival strategy, allowing it to persist in challenging environments where other microbes may fail. This adaptability underscores the ecological importance of M. aurantiaca str. ATCC 27029 in maintaining microbial diversity and functionality in its native habitats." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora aurantiaca (nom. illeg.) Positive Rod No 1 1 Aerobe Mesophilic Multiple Free living Sporulating 47850 RIBT00000000.1 Bac0001331 Micromonospora chersina Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora chersina 29 mesophilic non-spore-forming 47854 FMIB00000000.1 Bac0001332 Micromonospora echinaurantiaca Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora echinaurantiaca 47857 NZ_LT607750.1 Bac0001333 Micromonospora peucetia Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora peucetia 47871 FMIC00000000.1 Bac0001334 Micromonospora rosaria str. DSM 803 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora rosaria 29 mesophilic 47874 LRQV00000000.1 Bac0001335 Pseudomonas amygdali Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 47877 LJPQ00000000.1 Bac0001336 Pseudomonas azotoformans str. SC 14 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas azotoformans 47878 MZZJ00000000.1 Bac0001337 Pseudomonas azotoformans Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas azotoformans 47878 RBTM00000000.1 Bac0001338 Pseudomonas azotoformans str. S4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas azotoformans 47878 NZ_CP014546.1 Bac0001339 Pseudomonas fulva "Pseudomonas fulva is a Gram-negative, rod-shaped bacterium that typically exists in a single-cell arrangement. This microbe is primarily associated with hosts, indicating a potential symbiotic or associative relationship with living organisms. While specific ecological roles remain to be fully elucidated, the presence of Pseudomonas species in host-associated environments often suggests involvement in nutrient cycling or interactions that may influence host health or microbiome dynamics. ↵↵Given its classification within the Pseudomonas genus, Pseudomonas fulva may share metabolic capabilities that allow it to thrive in diverse environments, particularly those influenced by host activities. Further exploration of its associations could yield insights into its functional roles in various ecosystems, particularly in how it may contribute to the overall microbial community structure and function in host environments. Understanding these interactions will be crucial for appreciating the ecological significance of Pseudomonas fulva and its potential utility in biotechnological applications or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fulva Negative Rod Yes HostAssociated Singles 47880 QJRU00000000.1 Bac0001340 Phytopseudomonas straminea Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Phytopseudomonas Phytopseudomonas straminea 47882 FOMO00000000.1 Bac0001341 Pseudomonas synxantha Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas synxantha 47883 MSDH00000000.1 Bac0001342 Pseudomonas oryzihabitans Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas oryzihabitans 47885 FMWB00000000.1 Bac0001343 Pseudomonas oryzihabitans str. H72 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas oryzihabitans 47885 LWCR00000000.1 Bac0001344 Pseudomonas luteola Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas luteola 47886 FQYS00000000.1 Bac0001345 Serratia fonticola str. 5l "Serratia fonticola strain 5l is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and functions as a chemoheterotroph. This versatile microbe is capable of thriving in multiple habitats, suggesting a broad ecological adaptability. Its nonsporulating nature indicates a reliance on other survival strategies under adverse conditions, as it does not form spores to endure environmental stressors.↵↵As a facultative anaerobe, Serratia fonticola str. 5l can utilize oxygen for respiration when available but is also capable of anaerobic processes, allowing it to occupy various environments with fluctuating oxygen levels. This metabolic flexibility may facilitate its survival in diverse ecological niches, which can range from soil and water to plant surfaces.↵↵The combination of these traits positions Serratia fonticola str. 5l as an organism well-suited for dynamic ecosystems where nutrient availability and oxygen levels can vary significantly. Its ability to adapt to different environmental conditions may play a crucial role in nutrient cycling within its habitats, potentially influencing microbial community dynamics and interactions with other organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia fonticola Negative Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 47917 MQRH00000000.1 Bac0001346 Serratia fonticola str. DSM 4576 "Serratia fonticola strain DSM 4576 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism, utilizing a chemoheterotrophic lifestyle for energy acquisition. This organism is versatile in its habitat, thriving in multiple environments, which suggests a broad ecological adaptability. As a facultative anaerobe, S. fonticola has the ability to grow in both the presence and absence of oxygen, allowing it to exploit various niches where organic substrates are available.↵↵The rod shape of this bacterium, combined with its nonsporulating nature, implies a reliance on vegetative growth rather than survival strategies typically associated with spore formation. This characteristic may reflect its ecological adaptations to environments where nutrient availability fluctuates but does not necessitate extreme survival mechanisms. The chemoheterotrophic energy source indicates that S. fonticola can metabolize organic compounds, which could include a range of carbon sources, potentially influencing its interactions with other microorganisms and its role in nutrient cycling.↵↵In summary, the ability of Serratia fonticola str. DSM 4576 to thrive in diverse habitats while utilizing organic substrates for energy underscores its ecological versatility, which may contribute to its presence in various microbial communities where organic matter is abundant." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia fonticola Negative Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 47917 NZ_CP011254.1 Bac0001347 Vibrio cyclitrophicus Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cyclitrophicus 47951 NZ_CP170590.1 Bac0001348 Sphaerotilus mobilis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Sphaerotilus Sphaerotilus mobilis 47994 SGWV00000000.1 Bac0001349 Acinetobacter pittii str. IEC338SC "Acinetobacter pittii strain IEC338SC is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotrophic aerobe, indicating it requires oxygen for growth and derives its energy from organic compounds. ↵↵The broad habitat range of A. pittii suggests a versatile adaptability to various environmental conditions, which is characteristic of many species within the Acinetobacter genus. The ability to utilize a diverse array of organic substrates as a heterotrophic energy source may allow this strain to inhabit multiple ecological niches, potentially contributing to its survival in both natural and anthropogenic environments.↵↵Understanding the traits of A. pittii IEC338SC not only highlights its physiological capabilities but also raises questions about its ecological roles, particularly in environments where organic matter is abundant. Its presence in diverse habitats may indicate its involvement in nutrient cycling and interactions with other microbial communities, which could play a significant role in maintaining ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 NZ_CP015148.1 Bac0001350 Acinetobacter pittii str. YMC2010/8/T346 "Acinetobacter pittii strain YMC2010/8/T346 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is classified as a chemoheterotroph, utilizing organic compounds as its energy source. It thrives optimally at a temperature of 37.0°C, indicating a preference for environments that mimic the conditions found in warm-blooded hosts. A. pittii is obligately aerobic, necessitating oxygen for its metabolic processes.↵↵The habitat of A. pittii is described as multiple, suggesting a versatile ecological niche that may encompass soil, water, and potentially hospital environments. Its ability to adapt to various habitats may contribute to its significance in microbial communities and interactions within those ecosystems. The ecological versatility of A. pittii str. YMC2010/8/T346 highlights its role in nutrient cycling and its potential involvement in the microbial dynamics of diverse environments.↵↵Understanding the specific traits of A. pittii, particularly its optimal growth conditions and metabolic capabilities, enhances our knowledge of its ecological role. This bacterium may serve as an important model organism for studying microbial adaptation and survival strategies in varied environments, especially under conditions that favor its aerobic metabolism and heterotrophic lifestyle." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 NZ_CP017938.1 Bac0001351 Photobacterium leiognathi subsp. mandapamensis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium leiognathi 48408 PYNS00000000.1 Bac0001352 Prosthecobacter debontii Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter debontii 48467 FUYE00000000.1 Bac0001353 Streptomyces viridifaciens str. DSM 40239 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces viridifaciens 48665 CP090840.1 Bac0001354 Novosphingobium subterraneum str. DSM 12447 "Novosphingobium subterraneum str. DSM 12447 is a rod-shaped bacterium that belongs to the genus Novosphingobium. This microorganism exhibits a distinctive morphology characterized by its elongated, cylindrical form, which is typical for members of this genus. As a representative strain, DSM 12447 may possess unique metabolic capabilities, although specific metabolic pathways or substrates utilized by this strain are not provided in the available data.↵↵The rod shape of Novosphingobium subterraneum str. DSM 12447 suggests potential adaptations for motility and nutrient acquisition in its environment. This structural feature may facilitate its ability to navigate through various substrates, potentially enhancing its ecological versatility. Members of the Novosphingobium genus are often found in diverse habitats, including soil and aquatic environments, where they may play critical roles in the degradation of complex organic compounds.↵↵The unique morphology and potential metabolic versatility of Novosphingobium subterraneum str. DSM 12447 may contribute to its ecological role in biogeochemical cycles, particularly in the breakdown of environmental pollutants. Understanding the functional traits of this bacterium could provide insights into its contributions to microbial community dynamics and its potential applications in bioremediation efforts, highlighting the importance of rod-shaped bacteria in environmental microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium subterraneum Rod 48936 JRVC00000000.1 Bac0001355 Marinobacterium stanieri Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinobacterium Marinobacterium stanieri 49186 FTMN00000000.1 Bac0001356 Methanothermobacter defluvii str. DSM 7466 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter defluvii 49339 QREL00000000.1 Bac0001357 Thermococcus profundus "Thermococcus profundus is a hyperthermophilic archaeon characterized by its coccal shape. This microorganism thrives in extreme thermal environments, typically found in deep-sea hydrothermal vents or other high-temperature habitats. Thermococcus profundus is notable for its ability to withstand temperatures that exceed 80°C, making it one of the organisms adapted to survive in some of the hottest ecosystems on Earth. ↵↵This archaeon exhibits anaerobic metabolism, utilizing a range of substrates for energy production, which enables it to thrive in environments devoid of oxygen. The unique adaptations of Thermococcus profundus to extreme heat and pressure suggest that it possesses specialized protein structures and enzymatic pathways that maintain functional integrity under such conditions. ↵↵The metabolic capabilities of Thermococcus profundus not only contribute to its survival but also play a significant role in biogeochemical cycles in its native habitats. Understanding the mechanisms that allow Thermococcus profundus to flourish in extreme environments can provide insights into the evolutionary processes of life on Earth, as well as potential applications in biotechnology, particularly in the development of heat-stable enzymes for industrial processes. This organism exemplifies the resilience of life and its capacity to adapt to extreme conditions, potentially offering clues about the limits of habitability on other planets where similar environments may exist." Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus profundus Cocci 49899 NZ_CP014862.1 Bac0001358 Rhizobium sullae str. Hc14 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sullae 50338 SMBH00000000.1 Bac0001359 Marinobacter sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. Marine 50741 NYUH00000000.1 Bac0001360 Brevibacillus agri "Brevibacillus agri is a gram-positive, rod-shaped bacterium that thrives at moderate temperatures, classified as a mesophile. This microbe exhibits heterotrophic metabolism, deriving energy from organic compounds, and is considered a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. Primarily found in soil and plant environments, Brevibacillus agri has been isolated from various substrates, including agricultural soils and decomposing organic matter, where it plays a vital role in nutrient cycling. In terms of morphology, as a gram-positive bacterium, Brevibacillus agri retains the crystal violet stain used in the Gram staining procedure, appearing purple under a microscope. Its rod-like shape enables effective motility and adaptability in diverse ecological niches. As a mesophile, it thrives best in temperatures ranging from 20°C to 45°C, making it well-suited for temperate environments where most agricultural activities occur. Brevibacillus agri’s heterotrophic lifestyle allows it to decompose organic materials, contributing to soil fertility by breaking down complex compounds into simpler forms that plants can absorb. Its facultative anaerobic nature provides the flexibility to utilize oxygen when available but also to survive in oxygen-poor conditions, such as waterlogged soils, where many other organisms struggle. This microbe also has significance in biotechnology, as it has been explored for its potential applications in biocontrol and biofertilization. Certain strains of Brevibacillus agri produce enzymes and bioactive compounds that can enhance plant growth and suppress soil-borne pathogens, making it a valuable asset for sustainable agriculture. The versatility and adaptability of Brevibacillus agri highlight its important ecological role and potential benefits in agricultural practices." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus agri Variable Rod Aerobe 51101 RHHN00000000.1 Bac0001361 Actinobacillus delphinicola Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus delphinicola microaerophile 51161 NZ_LR134510.1 Bac0001362 Streptomyces griseocarneus str. 132 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseocarneus 29 mesophilic 51201 PENC00000000.1 Bac0001363 Methanohalophilus euhalobius str. DSM 10369 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus euhalobius 51203 PVBU00000000.1 Bac0001364 Methanohalophilus euhalobius Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus euhalobius 51203 OBDR00000000.1 Bac0001365 Kluyvera ascorbata "Kluyvera ascorbata is a Gram-negative, rod-shaped bacterium that thrives best at moderate temperatures, classifying it as a mesophilic organism. This microbe is a chemoheterotroph, deriving its energy from organic compounds, and is typically found in various body sites, including the gastrointestinal tracts of humans and other animals, as well as in environmental sources like soil and water. K. ascorbata is categorized as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. As a Gram-negative bacterium, K. ascorbata has a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contribute to its resilience in diverse environments. The rod shape enhances its mobility and adaptability in complex ecosystems, allowing for effective colonization in niches such as the gastrointestinal system. The mesophilic temperature preference indicates that this microbe is well-suited for growth in the human body and other warm-blooded hosts, where it can thrive and contribute to various metabolic processes. K. ascorbata’s classification as a chemoheterotroph highlights its reliance on organic substrates, such as carbohydrates and amino acids, to fuel its growth and sustain metabolic activities. Its facultative anaerobic nature enables it to switch between aerobic and anaerobic respiration, making it versatile in fluctuating oxygen environments. Notably, Kluyvera ascorbata is increasingly recognized for its potential role in biotechnological applications, including bioremediation and the production of bioactive compounds. Additionally, it has been implicated in human infections, particularly in immunocompromised individuals, leading to research focused on its pathogenicity and clinical significance. The bacterium’s ability to ferment certain sugars and produce energy efficiently has also sparked interest in its utility in industrial microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kluyvera Kluyvera ascorbata Negative Facultative anaerobe 51288 RHFN00000000.1 Bac0001366 Pediococcus damnosus Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus damnosus 51663 JQBD00000000.1 Bac0001367 Tetragenococcus halophilus str. LMG 26042 "Tetragenococcus halophilus strain LMG 26042 is a halophilic coccus known for its adaptation to high-salinity environments. This microorganism is characterized by its spherical shape, which is typical of cocci, allowing it to maintain structural integrity in osmotic stress conditions. Tetragenococcus halophilus is part of a group of bacteria that thrive in environments where salt concentrations are significantly elevated, suggesting that it possesses specialized mechanisms for osmoregulation and ion homeostasis.↵↵The halophilic nature of this strain indicates that it likely has developed unique metabolic pathways and cellular structures that facilitate survival in extreme saline conditions. Such adaptations may include the production of compatible solutes that help stabilize proteins and cellular structures against the detrimental effects of high salt levels. ↵↵Tetragenococcus halophilus str. LMG 26042 is of particular interest in the study of microbial life in hypersaline environments, which are often inhospitable to most life forms. This strain can provide insights into microbial diversity and adaptation strategies in extreme ecosystems. Furthermore, the physiological traits of Tetragenococcus halophilus might offer valuable information for biotechnological applications, particularly in processes that require salt tolerance, such as fermentation in high-salinity food products. Understanding the biology of this strain could enhance our knowledge of microbial ecology in saline habitats and potentially lead to the discovery of novel biochemical pathways." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus halophilus Cocci 51669 NZ_CP027768.1 Bac0001368 Microbacterium sp. Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. 51671 PBZY00000000.1 Bac0001369 Meiothermus sp. PNK-Is4 Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp. PNK-Is4 52022 SESJ00000000.1 Bac0001370 Acinetobacter venetianus str. JKSF06 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter venetianus 52133 LSVD00000000.1 Bac0001371 Acinetobacter venetianus str. LUH13518 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter venetianus 52133 JRHX00000000.1 Bac0001372 Mitsuokella multacida "Mitsuokella multacida is a gram-negative, rod-shaped bacterium that thrives in a wide range of temperatures, falling under the category of mesophiles. It is a chemoheterotroph, meaning it uses pre-existing organic matter as its energy source and relies on cellular respiration to produce energy. Specifically, it is an aerobic chemoheterotroph, requiring oxygen to carry out its metabolic processes. As a rod-shaped microbe, Mitsuokella multacida can be found colonizing various body sites across all possible species, including the skin, respiratory tract, gastrointestinal tract, and genitourinary tract. Its ability to inhabit diverse environments is likely due to its versatility in adapting to different temperatures, pH levels, and nutrient availability. Mitsuokella multacida is an obligate aerobe, meaning it is strictly dependent on oxygen for its growth and survival. In its natural habitat, it likely utilizes oxygen to break down organic compounds and generate energy through cellular respiration. What sets Mitsuokella multacida apart from other microbes is its ability to form biofilms on surfaces, which allows it to adhere to diverse substrates and resist environmental stresses. This characteristic, combined with its widespread distribution across various body sites and environments, highlights its remarkable adaptability and resilience. Despite its prevalence, Mitsuokella multacida is relatively understudied, leaving room for further research into its ecological role and potential applications. However, its ability to thrive in diverse environments and interact with its hosts in complex ways makes it a fascinating subject for scientists and clinicians alike." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Mitsuokella Mitsuokella multacida Negative Anaerobe 52226 QRHE00000000.1 Bac0001373 Lactobacillus gallinarum "Lactobacillus gallinarum is a Gram-positive, rod-shaped bacterium belonging to the genus Lactobacillus. This microbe is characterized by its ability to ferment sugars, producing lactic acid as a primary metabolic end product. The production of lactic acid is significant as it contributes to the preservation of food products and influences the microbiota in various environments.↵↵Lactobacillus gallinarum is often found in association with the gastrointestinal tracts of poultry and plays a role in their digestive health. The presence of this bacterium may facilitate the breakdown of complex carbohydrates, thus enhancing nutrient absorption and overall gut function. In addition to its role in digestion, Lactobacillus species, including L. gallinarum, are commonly utilized in food fermentation processes, particularly in the production of dairy products.↵↵The ecological significance of Lactobacillus gallinarum extends beyond its fermentation capabilities; it may also contribute to the competitive exclusion of pathogenic microorganisms in the gut, thereby promoting a balanced microbiome. Its ability to produce lactic acid can lower the pH in its immediate environment, creating conditions that are less favorable for the growth of harmful bacteria. Continued research into Lactobacillus gallinarum may provide insights into its potential applications in enhancing animal health and supporting sustainable agricultural practices." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gallinarum Positive Rod 52242 NFLP00000000.1 Bac0001374 Nitrosomonas nitrosa Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas nitrosa 52442 FOUF00000000.1 Bac0001375 Desulfomicrobium apsheronum Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium apsheronum anaerobic 52560 FORX00000000.1 Bac0001376 Acetobacterium wieringae str. DSM 1911 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Acetobacterium Acetobacterium wieringae anaerobic 52694 LKEU00000000.1 Bac0001377 Actinoplanes brasiliensis str. DSM 43805 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Paractinoplanes Paractinoplanes brasiliensis 29 mesophilic spore-forming 52695 SNWR00000000.1 Bac0001378 Actinomyces denticolens Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces denticolens 52767 FQYL00000000.1 Bac0001379 Schaalia georgiae str. KHUD_A1 "Schaalia georgiae strain KHUD_A1 is a Gram-positive, nonsporulating bacterium classified as a chemoheterotroph, primarily inhabiting the gut of its host. This strain is characterized by its reliance on organic compounds for energy and carbon, which it derives from the complex environment of the gastrointestinal tract. The presence of Schaalia georgiae in the gut suggests a potential role in the fermentation processes typical of the gut microbiome, facilitating nutrient absorption and possibly influencing host metabolism.↵↵Due to its Gram-positive nature, this bacterium likely possesses a thick peptidoglycan layer, which may contribute to its structural integrity in the challenging gut environment. While the specific interactions of Schaalia georgiae strain KHUD_A1 with its host are yet to be fully elucidated, its nonsporulating characteristic indicates a lifestyle that may depend on the stable conditions provided within the gut.↵↵The ecological significance of Schaalia georgiae strain KHUD_A1 may extend beyond mere colonization, potentially participating in symbiotic relationships that enhance the gut's microbial diversity and overall health of the host. Further investigation into the metabolic pathways and interactions of this strain could provide valuable insights into its role within the gut microbiome and its contributions to host well-being." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia georgiae Positive No 1 Chemoheterotroph Host gut Nonsporulating 52768 RSCF00000000.1 Bac0001380 Buchananella hordeovulneris Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Buchananella Buchananella hordeovulneris 52770 RQYV00000000.1 Bac0001381 Actinomyces slackii Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces slackii 52774 NZ_LR134363.1 Bac0001382 Allobosea thiooxidans Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea thiooxidans 53254 FUYX00000000.1 Bac0001383 Tatumella citrea str. DSM 13699 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Tatumella citrea 53336 NZ_CP015580.1 Bac0001384 Xenorhabdus japonica Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus japonica 53341 FOVO00000000.1 Bac0001385 Staphylococcus delphini Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus delphini 53344 MWUU00000000.1 Bac0001386 Enterococcus durans "Enterococcus durans is a Gram-positive, rod-shaped microbe that thrives in a temperature range of 25-40°C, categorizing it as a mesophilic organism. As a heterotroph, it obtains its energy by breaking down complex organic compounds, specifically utilizing glucose as its primary energy source. Its metabolism is anaerobic, producing energy through fermentation, which is characteristic of many Enterococcus species. As a facultative anaerobe, Enterococcus durans can grow in the presence or absence of oxygen, allowing it to tolerate a range of environmental conditions. However, it prefers aerobic conditions, where it can utilize oxygen as a terminal electron acceptor to produce ATP. Enterococcus durans is found in all body sites, including skin, mucous membranes, and gut, across all species, making it a common commensal microbe. Its ability to colonize and persist in diverse environments has led to its consideration as a potential opportunistic pathogen. One notable aspect of Enterococcus durans is its ability to form biofilms, which provides protection against environmental stressors and antimicrobial agents. This ability to adapt and survive in a variety of settings has contributed to its widespread presence in human microbiomes. In addition to its ecological significance, Enterococcus durans has been studied for its potential in biotechnology applications, such as the production of bioactive compounds and enzymes. Its ability to ferment carbohydrates and produce organic acids also makes it a valuable tool in food processing and fermentation industries." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus durans Positive Cocci Facultative anaerobe influent; wastewater treatment plant Human 53345 LEPB00000000.1 Bac0001387 Enterococcus mundtii str. EM01 "Enterococcus mundtii strain EM01 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C and exhibits a facultative anaerobic metabolism. As a chemoheterotroph, this microbe derives its energy from organic compounds, allowing it to adapt to various habitats where organic substrates are available. ↵↵Enterococcus spp. are commonly found in diverse environments, including soil, water, and the gastrointestinal tracts of humans and animals, reflecting their versatile ecological presence. The ability of E. mundtii str. EM01 to grow in both aerobic and anaerobic conditions enhances its adaptability to fluctuating environmental oxygen levels. This trait is particularly advantageous in complex microbial communities, where competition for resources may vary dramatically.↵↵The ecological flexibility of E. mundtii str. EM01 suggests potential roles in nutrient cycling and fermentation processes, especially in environments rich in organic matter. Further exploration of this strain could reveal insights into its contributions to microbial diversity and functionality in its ecosystems. Such investigations may also illuminate its interactions with other microbial species, providing a deeper understanding of its ecological significance." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus mundtii positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 53346 PHIL00000000.1 Bac0001388 Enterococcus mundtii str. H18-EM "Enterococcus mundtii strain H18-EM is a Gram-positive cocci that exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is nonsporulating and functions as a chemoheterotroph, deriving its energy from organic compounds. Optimal growth occurs at a temperature of 37.0°C, suggesting a preference for mesophilic conditions typically found in warm-blooded hosts and various terrestrial environments.↵↵E. mundtii is known to inhabit diverse habitats, indicating its versatility and potential adaptability to different ecological niches. The ability to utilize a range of organic substrates as energy sources may facilitate its survival in various environments, including those influenced by human activity, such as food production systems and gut microbiomes.↵↵The ecological implications of E. mundtii str. H18-EM's traits are noteworthy. Its facultative anaerobic nature allows it to occupy microenvironments with fluctuating oxygen levels, potentially playing a role in nutrient cycling and microbial community dynamics. This adaptability may also contribute to its presence in fermented food products, where it may influence flavor profiles and fermentation processes. Understanding the ecological role of E. mundtii in these contexts can provide insights into its contributions to microbial diversity and functionality in complex ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus mundtii positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 53346 PYGR00000000.1 Bac0001389 Terracoccus luteus str. DSM 44267 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Terracoccus Terracoccus luteus 29 mesophilic 53356 RBXT00000000.1 Bac0001390 Mycobacterium heidelbergense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium heidelbergense 53376 MVHR00000000.1 Bac0001391 Mycobacterium paraffinicum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paraffinicum aerobic 53378 MPNT00000000.1 Bac0001392 Pseudomonas asplenii str. 4A7 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas asplenii 53407 LUUC00000000.1 Bac0001393 Pseudomonas asplenii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas asplenii 53407 NZ_LT629972.1 Bac0001394 Pseudomonas ficuserectae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas ficuserectae 53410 LJQJ00000000.1 Bac0001395 Xanthomonas populi str. CFBP1817 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas populi 53414 MDEJ00000000.1 Bac0001396 Eubacterium callanderi "Eubacterium callanderi is a Gram-positive, nonsporulating bacterium characterized by its anaerobic and fermentative metabolism, functioning as a chemoheterotroph. This microbe has garnered interest due to its role in the gastrointestinal tract and other anaerobic environments, where it contributes to the complex ecosystem of gut microbiota. Eubacterium callanderi is particularly noted for its methanogenic capability, producing methane as a metabolic byproduct during the fermentation of organic substrates. This species thrives in diverse habitats, including the intestines of humans and other mammals, where it plays a significant role in breaking down complex carbohydrates and other organic materials that may not be fully digested by the host. By digesting dietary fibers and other non-digestible compounds, Eubacterium callanderi aids in nutrient absorption and contributes to the overall health of the host.Additionally, this microbe's ability to produce methane can influence the dynamics of methane emissions in the environment, contributing to the greenhouse gas profile, particularly in anaerobic settings such as wetlands and ruminant stomachs. Its presence illustrates the intricate balance of microbial communities that not only supports individual host health but also affects broader ecological processes, highlighting the importance of understanding such microbes in the context of global climate change and ecosystem management." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium callanderi Positive No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 53442 FOWI00000000.1 Bac0001397 Janibacter limosus str. P3-3-X1 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter limosus microaerophile 29 mesophilic 53458 NZ_CP036164.1 Bac0001398 Polaribacter filamentus str. ATCC 700397 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter filamentus 53483 MQUA00000000.1 Bac0001399 Thalassobius gelatinovorus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Thalassovita Thalassovita gelatinovora 53501 CYSA00000000.1 Bac0001400 Sulfobacillus acidophilus Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Sulfobacillus Sulfobacillus acidophilus 53633 PXYV00000000.1 Bac0001401 Pseudomonas amygdali pv. lachrymans Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 53707 RBQI00000000.1 Bac0001402 Thermococcus peptonophilus Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus peptonophilus 53952 NZ_CP014751.1 Bac0001403 Peptoniphilus harei str. CMW7756A "Peptoniphilus harei strain CMW7756A is a Gram-positive, nonsporulating coccus that thrives as a chemoheterotroph in the anaerobic environment of the host gut, with an optimal growth temperature of 37.0°C. As an anaerobic organism, it relies on the fermentation of organic compounds for energy, reflecting its adaptation to the gut microbiome where oxygen levels are typically low. ↵↵The presence of Peptoniphilus harei in the gastrointestinal tract suggests a potential role in the complex microbial community that contributes to host digestion and metabolism. While specific interactions with the host or other microbial species have not been detailed, the ability of this species to flourish in an anaerobic setting indicates it may participate in metabolic processes that facilitate nutrient absorption or contribute to maintaining gut homeostasis. The study of such gut-associated microbes is crucial, as they can offer insights into the intricate balance of microbial ecosystems and their influence on the health of the host organism." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus harei Positive Coccus No Anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 54005 LRQE00000000.1 Bac0001404 Anaerococcus octavius "Anaerococcus octavius is a species of anaerobic cocci that thrives in environments devoid of oxygen. As a member of the genus Anaerococcus, it exhibits a spherical shape typical of cocci, which is a common morphological characteristic among many bacteria within this group. The anaerobic nature of Anaerococcus octavius suggests that it is adapted to survive and grow in environments where oxygen is limited, which may include various anaerobic habitats within the human body or other microbial ecosystems.↵↵The ability of Anaerococcus octavius to thrive in such conditions underscores its potential role in the complex interplay of microbial communities, particularly in anaerobic niches. These environments can be found in locations such as the gastrointestinal tract, where it may contribute to the overall microbiota composition. The specific ecological niches occupied by Anaerococcus octavius may influence its interactions with other microbes and host organisms, potentially impacting metabolic processes and nutrient cycling in anaerobic ecosystems. Further understanding of its ecological role could provide insights into the dynamics of microbial communities and their contributions to health and disease." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus octavius Cocci anaerobic 54007 PKGS00000000.1 Bac0001405 Pediococcus parvulus str. 2.6 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus parvulus anaerobic / aerobic / microaerophile 54062 LXND00000000.1 Bac0001406 Xylophilus ampelinus str. CECT 7646 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Xylophilus Xylophilus ampelinus 54067 QJTC00000000.1 Bac0001407 Halanaerobium congolense str. DSMZ 11287 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium congolense 54121 SOEF00000000.1 Bac0001408 Halanaerobium congolense Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium congolense 54121 FNEH00000000.1 Bac0001409 Thermococcus chitonophagus Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus chitonophagus 54262 NZ_LN999010.1 Bac0001410 Raoultella ornithinolytica str. 1810 "Raoultella ornithinolytica str. 1810 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this microbe utilizes organic compounds as its energy source, indicating its reliance on a variety of carbon sources for growth. The ability to function in multiple habitats suggests a degree of ecological versatility, allowing R. ornithinolytica str. 1810 to adapt to diverse environmental conditions.↵↵The facultative anaerobic nature of this organism enables it to survive in both aerobic and anaerobic environments, which may provide a competitive advantage in fluctuating ecological niches. This adaptability is particularly significant given the varied habitats in which it can be found, potentially including soil, water, and associated with various hosts. Understanding the metabolic capabilities and environmental preferences of R. ornithinolytica str. 1810 enhances our comprehension of its role within microbial communities and its interactions with other organisms in its ecosystem. Further research could elucidate its specific ecological roles and contributions to nutrient cycling in the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella ornithinolytica Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 54291 NETI00000000.1 Bac0001411 Salmonella enterica subsp. enterica serovar Paratyphi A "Salmonella enterica subsp. enterica serovar Paratyphi A is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This nonsporulating organism thrives optimally at 37.0°C and is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. As a facultative anaerobe, S. Paratyphi A can grow in both aerobic and anaerobic environments, which allows it to inhabit a diverse range of ecological niches.↵↵The bacterium is part of the broader Salmonella enterica species, known for its significance in human health. Its ability to adapt to varying oxygen levels facilitates its survival in multiple habitats, including both environmental sources and the intestinal tracts of various hosts. The presence of this organism in diverse environments underscores its ecological versatility and potential for transmission.↵↵Understanding the traits of S. Paratyphi A, especially its metabolic capabilities and growth conditions, is essential for developing effective strategies for monitoring and controlling its spread in various settings. The ecological adaptability of this serovar highlights the importance of environmental surveillance in public health initiatives aimed at preventing infections associated with this microbe." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Rod No 1 2 Facultative 37 Chemoorganotroph Mesophilic Multiple Free living Pairs-Singles Nonsporulating 54388 SQRE00000000.1 Bac0001412 Brevibacillus formosus Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus formosus 54913 NZ_CP018145.1 Bac0001413 Flavobacterium branchiophilum "Flavobacterium branchiophilum is a Gram-negative, rod-shaped bacterium that thrives in temperatures between 15°C to 30°C, placing it in the mesophilic temperature preference category. As a heterotroph, this microbe relies on organic compounds as its energy source, whereas as a chemotroph, it derives its energy through chemical reactions. Specifically, F. branchiophilum is a chemoheterotroph, utilizing both organic molecules and inorganic chemicals for energy production. In terms of body sites, F. branchiophilum has been isolated from various locations, including human oral and respiratory tracts, as well as skin and nasal mucosa. It is also found in aquatic environments, such as freshwater lakes and rivers, and has even been detected in the gut of certain fish species. This microbe's ability to inhabit a wide range of environments and hosts is likely due to its versatility in terms of its metabolic capabilities and tolerance for varying oxygen levels. F. branchiophilum is an obligate aerobe, meaning it requires the presence of oxygen to survive and grow. In fact, it is highly sensitive to even brief periods of anaerobiosis, making it susceptible to oxygen deprivation. This characteristic is likely linked to the microbe's ability to produce enzymes that are sensitive to oxygen, such as the periplasmic enzymes involved in the degradation of complex organic molecules. F. branchiophilum has been associated with a range of human diseases and conditions, including respiratory tract infections, skin lesions, and even dental caries. Furthermore, its capacity to form biofilms on dental surfaces has led to its involvement in the development of dental plaque. Despite its potential pathogenicity, F. branchiophilum is also being studied for its potential applications in biotechnology, such as the degradation of pollutants and the production of bioactive compounds." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium branchiophilum Rod No 1 Chemoheterotroph Multiple Nonsporulating 55197 PCMW00000000.1 Bac0001414 Pectobacterium betavasculorum Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium betavasculorum 55207 JQHM00000000.1 Bac0001415 Pantoea cypripedii str. LMG 2657 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea cypripedii 55209 MLJI00000000.1 Bac0001416 Erwinia persicina str. B64 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia persicina 55211 NZ_CP022727.1 Bac0001417 Erwinia persicina str. CFBP13511 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia persicina 55211 QGAC00000000.1 Bac0001418 Erwinia rhapontici str. BIGb0435 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia rhapontici 55212 SOAQ00000000.1 Bac0001419 Pseudomonas syringae pv. ribicola Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 55398 LJRF00000000.1 Bac0001420 Streptomyces netropsis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces netropsis 55404 OKRJ00000000.1 Bac0001421 Actinomyces graevenitzii "Actinomyces graevenitzii is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the oral cavity, gastrointestinal tract, and urogenital tract, across different species, and is typically an Obligate Anaerobe. The Gram-positive characteristic is due to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining procedure. The rod shape of A. graevenitzii allows it to fit into tight spaces and colonize various environments. As a mesophile, it grows best in temperatures between 20-40°C, which is suitable for its presence in the human body.As a Chemoheterotroph, A. graevenitzii relies on chemical compounds for energy and organic compounds for carbon, which it obtains from its environment. This characteristic allows it to thrive in environments with abundant organic matter. The presence of A. graevenitzii in various body sites suggests its ability to adapt to different environments and host-microbe interactions. Its classification as an Obligate Anaerobe indicates that it requires the absence of oxygen to grow, which is consistent with its presence in areas with low oxygen levels, such as the oral cavity and gastrointestinal tract. A. graevenitzii has been implicated in various human infections, including actinomycosis, an rare infectious bacterial disease that can affect the mouth, digestive tract, and other parts of the body. The microbe's ability to form biofilms and its resistance to certain antibiotics make it a challenging pathogen to treat. Recent studies have also explored the potential role of A. graevenitzii in the development of certain types of cancer, highlighting the need for further research into its pathogenic mechanisms and interactions with the human host." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces graevenitzii Positive Facultative anaerobe 55565 PNHV00000000.1 Bac0001422 Vibrio anguillarum str. 87-9-116 "Vibrio anguillarum str. 87-9-116 is a Gram-negative, curved-shaped bacterium that exists predominantly as single cells and is characterized as a nonsporulating organism. This strain is heterotrophic, utilizing organic compounds as its energy source, and displays a facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. The habitat of V. anguillarum str. 87-9-116 is primarily host-associated, indicating a close ecological relationship with its host organisms. ↵↵As a member of the Vibrio genus, this strain may play a role in the microbiota of aquatic environments, particularly in association with marine hosts. The facultative nature of its oxygen requirement suggests that V. anguillarum str. 87-9-116 could adapt to both aerobic and anaerobic niches within host organisms or their immediate environments. This adaptability may contribute to its survival in diverse ecological contexts, potentially influencing host microbiomes and interactions. Further studies could explore the specific roles this strain plays in host-associated environments and its interactions with other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 NZ_CP021980.1 Bac0001423 Vibrio anguillarum str. JLL237 "Vibrio anguillarum str. JLL237 is a Gram-negative, curved-shaped bacterium that is nonsporulating and typically found in a host-associated habitat. This strain exhibits a single-cell arrangement and demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic conditions. As a heterotroph, V. anguillarum str. JLL237 relies on organic compounds for its energy source, which may facilitate its survival in varied environments, particularly those associated with host organisms.↵↵The curved morphology of V. anguillarum str. JLL237 may contribute to its motility and ability to colonize specific niches within host organisms, although the precise implications of this trait require further investigation. The facultative nature of its oxygen requirement suggests that this bacterium can adapt to the fluctuating oxygen levels often present in aquatic environments, enhancing its ecological versatility.↵↵This adaptability in energy acquisition and oxygen utilization underscores the potential for V. anguillarum str. JLL237 to occupy diverse ecological roles, possibly influencing microbial community dynamics in host-associated environments. Understanding the specific interactions between this strain and its hosts may reveal insights into the ecological balance within these habitats, as well as the broader implications for microbial ecology in aquatic systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 NZ_CP022104.1 Bac0001424 Vibrio anguillarum str. 90-11-286 "Vibrio anguillarum str. 90-11-286 is a Gram-negative, curved-shaped bacterium that typically exists as single cells and is classified as a nonsporulating heterotroph. This microbe demonstrates facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. Its habitat is predominantly associated with hosts, indicating a potential interaction with living organisms, possibly serving as a symbiont or opportunistic organism.↵↵As a member of the Vibrio genus, V. anguillarum str. 90-11-286 is known for its versatile metabolic capabilities, which enable it to utilize a variety of organic compounds as energy sources. This adaptability may play a significant role in its ecological niche, particularly in environments where it can interact with host organisms. The fact that it does not engage in sporulation suggests that it relies on other survival strategies in fluctuating environmental conditions.↵↵Overall, the characteristics of V. anguillarum str. 90-11-286 may indicate its ecological relevance in aquatic systems, particularly in relation to its interactions with fish and other aquatic hosts. Its facultative anaerobic nature and heterotrophic lifestyle could facilitate its survival and persistence in dynamic ecosystems, contributing to the microbial diversity associated with aquatic habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 JAHGUI000000000.1 Bac0001425 Methanobrevibacter filiformis str. DSM 11501 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter filiformis 55758 LWMT00000000.1 Bac0001426 Neomoorella glycerini Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella glycerini 55779 CELZ00000000.1 Bac0001427 Thermococcus barophilus "Thermococcus barophilus, a microbe that defies the conventional norms of microbial life, is a Gram-positive, rod-shaped bacteria that thrives in the extreme temperature environments of deep-sea hydrothermal vents. As a thermophilic microbe, it falls within the temperature preference category of 60-80°C, making it one of the most heat-tolerant microorganisms known to date. This bacterium is an obligate chemotroph, relying on inorganic compounds as its energy source, and it produces energy through the reduction of sulfur compounds and the oxidation of ferrous iron. Not found in any human body site, Thermococcus barophilus is a deep-sea dwelling microbe that can be found in the sediments and hydrothermal vents of the Mariana Trench, the deepest part of the ocean. It is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, and grows best in environments devoid of oxygen. Its unique metabolic adaptations allow it to thrive in the harsh conditions of the deep-sea, where the lack of light and limited organic matter make it challenging for life to exist. Furthermore, Thermococcus barophilus is capable of producing a unique type of energy, known as ATP, through chemosynthesis, which is a process where energy from inorganic compounds is used to generate ATP. This process is distinct from the traditional energy production methods employed by most microorganisms, which rely on photosynthesis or aerobic respiration. One of the most fascinating aspects of Thermococcus barophilus is its ability to play a crucial role in the breakdown of organic matter in deep-sea environments. Its unique metabolic adaptations allow it to break down complex organic compounds, which are then used as a source of energy by other microorganisms. This process is essential for the decomposition of organic matter in deep-sea environments, where the slow rate of decomposition is a major challenge. In conclusion, Thermococcus barophilus is a remarkable microbe that has adapted to the extreme conditions of the deep-sea, where it plays a vital role in the breakdown of organic matter. Its unique metabolic adaptations, energy production methods, and ability to thrive in environments devoid of oxygen make it a fascinating subject of study in the fields of microbiology and astrobiology." Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus barophilus Cocci No 1 Anaerobic 88 Chemoheterotroph Hyperthermophilic Multiple Nonsporulating 55802 NZ_CP013050.1 Bac0001428 Cylindrospermum stagnale PCC 7417 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Cylindrospermum Cylindrospermum stagnale 56107 NC_019757.1 Bac0001429 Oscillatoria acuminata PCC 6304 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Oxynema Oxynema acuminatum 56110 NC_019694.1 Bac0001430 Sphingobium chungbukense str. DJ77 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium chungbukense aerobic 56193 LBIC00000000.1 Bac0001431 Xanthomonas bromi Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas bromi 56449 FLTX00000000.1 Bac0001432 Xanthomonas cucurbitae str. CFBP2542 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas cucurbitae 56453 MDED00000000.1 Bac0001433 Xanthomonas hortorum Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hortorum 56454 NZ_CP016879.1 Bac0001434 Xanthomonas pisi str. CFBP4643 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas pisi 56457 MDEI00000000.1 Bac0001435 Xanthomonas sacchari str. CFBP4641 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas sacchari 56458 MDEK00000000.1 Bac0001436 Xanthomonas sacchari str. R1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas sacchari 56458 NZ_CP010410.1 Bac0001437 Xanthomonas vasicola str. BLS185 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vasicola 56459 SMGF00000000.1 Bac0001438 Xanthomonas vesicatoria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vesicatoria 56460 NZ_CP018469.1 Bac0001439 Xanthomonas theicola str. CFBP 4691 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas theicola 56464 MIGX00000000.1 Bac0001440 Mycolicibacterium mucogenicum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium mucogenicum 56689 SDLO00000000.1 Bac0001441 Rhizobium gallicum str. IE4872 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium gallicum 56730 NZ_CP017104.1 Bac0001442 Halanaerobium kushneri Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium kushneri 56779 FTNC00000000.1 Bac0001443 Syntrophus aciditrophicus SB "The syntrophic benzoate degrader Syntrophus aciditrophicus (strain SB) is a new, strictly anaerobic, Gram-negative, nonmotile, non-sporeforming, rod-shaped bacterium that degrades benzoate and certain fatty acids (saturated and unsaturated) to acetate, carbon dioxide, hydrogen, and possibly formate in syntrophic association, or not, with hydrogen/formate-using methanogen microorganisms or a sulfate reducer. (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus aciditrophicus SB Negative Rod No 1 2 Anaerobe 35 Mesophilic Multiple Nonsporulating No 56780 NC_007759.1 Bac0001444 Colwellia sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. 56799 NVXS00000000.2 Bac0001445 Psychrobacter sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. 56811 DPJY00000000.1 Bac0001446 Shewanella frigidimarina str. Ag06-30 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina 56812 LRDC00000000.1 Bac0001447 Thermus brockianus str. GE-1 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus 56956 NZ_CP016314.1 Bac0001448 Lacticaseibacillus zeae str. CRBIP24.44 "Lacticaseibacillus zeae strain CRBIP24.44 is a Gram-positive, rod-shaped bacterium belonging to the Lactobacillus genus, which is recognized for its role in fermentation processes and contribution to food microbiology. This strain exemplifies characteristics typical of lactic acid bacteria, known for their ability to ferment sugars into lactic acid, thereby contributing to the preservation and flavor of various fermented products.↵↵Due to its Gram-positive nature, Lacticaseibacillus zeae demonstrates a thick peptidoglycan cell wall, which is a hallmark of its resilience in acidic environments, a common characteristic of lactic acid bacteria. The rod shape of this strain suggests a potential for efficient colonization and adaptation within diverse ecological niches, particularly in environments rich in carbohydrates, such as dairy products and plant materials.↵↵The ecological significance of Lacticaseibacillus zeae str. CRBIP24.44 may extend to its role in the microbiota of fermented foods, where it may contribute to the development of unique flavor profiles and nutritional benefits. Its presence in such environments underscores the importance of lactic acid bacteria in both human nutrition and food safety, highlighting the intricate relationships between microbial communities and their substrates. Further research into the metabolic capabilities of this strain could provide insights into its applications in fermentation technology and probiotic development." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus zeae Positive Rod 57037 VBWO00000000.1 Bac0001449 Lacticaseibacillus zeae str. CRBIP24.58 "Lacticaseibacillus zeae str. CRBIP24.58 is a Gram-positive, rod-shaped bacterium that is part of the lactic acid bacteria group. This strain is characterized by its ability to ferment carbohydrates, producing lactic acid as a primary metabolic end product. This fermentation process is essential for various applications in food technology, particularly in the production of fermented dairy products and plant-based foods, where it contributes to flavor development and preservation.↵↵The rod shape of Lacticaseibacillus zeae str. CRBIP24.58 is typical of many lactic acid bacteria, which often exhibit this morphology. The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, which is a hallmark of this group and plays a role in its resilience in acidic environments, such as those found in fermented products.↵↵While further details on its metabolic capabilities and ecological roles are not provided, the presence of Lacticaseibacillus zeae in fermentation systems suggests its potential role in enhancing the nutritional profile of foods through the production of bioactive compounds. Additionally, the strain's characteristics may contribute to the overall stability and safety of fermented products, highlighting the importance of Lacticaseibacillus zeae str. CRBIP24.58 in both microbiological research and practical applications in food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus zeae Positive Rod 57037 VBWN00000000.1 Bac0001450 Pseudodesulfovibrio profundus Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio profundus 57320 NZ_LT907975.1 Bac0001451 Citrobacter braakii str. SCC4 "Citrobacter braakii str. SCC4 is a Gram-negative bacterium characterized by its distinct cellular morphology and biochemical capabilities. As a member of the genus Citrobacter, this strain exhibits typical traits associated with enterobacterial species, although specific metabolic pathways and ecological roles may vary. ↵↵The Gram-negative status of Citrobacter braakii str. SCC4 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural feature is significant as it influences the bacterium's response to environmental stresses and its interactions with other microbial communities. ↵↵While specific data on its metabolic characteristics and habitat preferences are not provided, members of the Citrobacter genus are often found in diverse environments, including soil, water, and the gastrointestinal tracts of animals. This versatility suggests that Citrobacter braakii str. SCC4 may play a role in nutrient cycling within its ecosystem, potentially influencing the availability of organic compounds and interacting with other microbial populations. ↵↵Understanding the traits of Citrobacter braakii str. SCC4 contributes to the broader knowledge of the Citrobacter genus and its ecological significance, particularly in environments where it may participate in complex microbial interactions and contribute to local biodiversity. Further studies are warranted to elucidate its functional roles and applications in microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter braakii negative 57706 MTCP00000000.1 Bac0001452 Citrobacter braakii "Citrobacter braakii is a Gram-negative bacterium recognized for its potential significance in various environmental and clinical contexts. As a member of the genus Citrobacter, C. braakii exhibits typical characteristics associated with this group, including a rod-shaped morphology and the ability to ferment carbohydrates. The species is primarily found in diverse environments, including soil and water, and is often associated with the gastrointestinal tracts of animals, which may facilitate its dissemination in various ecosystems.↵↵C. braakii's Gram-negative status indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interaction with antimicrobial agents and its overall resilience in fluctuating environmental conditions. While this microbe's specific pathogenic potential is not elaborated upon in the current literature, its classification within the Enterobacteriaceae family suggests a capacity for biochemical versatility, enabling it to adapt to different niches.↵↵Research into C. braakii may yield insights into its role in biogeochemical cycles, particularly in nutrient cycling, owing to its metabolic capabilities. Understanding its ecological contributions could enhance our knowledge of microbial dynamics in ecosystems where it is prevalent, highlighting the importance of such microorganisms in maintaining environmental health and stability. Further studies are warranted to explore the full range of C. braakii's biological interactions and its potential applications in biotechnology and environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter braakii negative 57706 NAEW00000000.1 Bac0001453 Salmonella enterica subsp. enterica serovar Weltevreden "Salmonella enterica subsp. enterica serovar Weltevreden is a Gram-negative, spiral-shaped bacterium that typically exists in chains or as single cells. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. It thrives optimally at a temperature of 37.0°C, which is consistent with the physiological temperature of many warm-blooded hosts. S. enterica serovar Weltevreden is predominantly host-associated, suggesting a close relationship with its hosts, which may include a range of animal species.↵↵The microaerophilic nature of this bacterium reflects its requirement for reduced oxygen levels for optimal growth, which may influence its ecological niches and interactions within the host environment. Understanding the specific conditions under which S. enterica serovar Weltevreden thrives can provide insights into its potential roles in host-associated ecosystems and its adaptability to varying microenvironments. The unique combination of its morphological characteristics and metabolic requirements highlights its ecological versatility and potential implications for its survival and persistence in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 57743 SMQR00000000.1 Bac0001454 Burkholderia thailandensis "Burkholderia thailandensis is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolism. This organism is optimally adapted to growth at a temperature of 25.0°C, which suggests a preference for moderate environmental conditions, possibly reflective of its natural habitats. ↵↵As a member of the Burkholderia genus, B. thailandensis is closely related to other species within the group, which are known for their diverse metabolic capabilities and environmental versatility. Its Gram-negative cell wall structure contributes to its resilience in various terrestrial ecosystems, allowing it to interact with surrounding microbial communities and potentially influencing soil health and nutrient cycling.↵↵The preference for aerobic conditions indicates that B. thailandensis plays a role in processes requiring oxygen, such as the degradation of organic compounds and the cycling of nitrogen and other essential nutrients. These traits make it an important organism for studying microbial ecology and its interactions with plants and other soil-dwelling organisms.↵↵The ability of B. thailandensis to survive and proliferate in specific environmental niches highlights its potential role in bioremediation and ecosystem functioning. Further investigations into its ecological interactions and metabolic pathways could provide valuable insights into its contributions to soil microbiomes and overall terrestrial ecosystem dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial Free living 57975 NZ_CP022215.1 Bac0001455 Salmonella enterica subsp. enterica serovar Agona "Salmonella enterica subsp. enterica serovar Agona is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the ability to arrange in chains or as singles. This serovar thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting an adaptation to life in a host-associated habitat. As a chemoorganotroph, S. Agona derives its energy from organic compounds, further indicating its reliance on a nutrient-rich environment often found within animal hosts.↵↵The microaerophilic nature of S. Agona implies that it requires reduced levels of oxygen for growth, which may influence its distribution and survival strategies within host environments. This trait may also affect its metabolic pathways and interactions with the host's immune system. Additionally, the cell arrangement of S. Agona, as singles or in chains, could play a role in its colonization abilities and biofilm formation in specific niches within the host.↵↵Understanding the ecological role of S. enterica serovar Agona enhances our comprehension of its potential interactions within host-associated environments, including implications for nutrient cycling and microbial community dynamics. Moreover, the adaptation to microaerophilic conditions may provide insights into its survival strategies and the ecological pressures it faces within its preferred habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 NZ_CP025445.1 Bac0001456 Salmonella enterica subsp. enterica serovar Bovismorbificans "Salmonella enterica subsp. enterica serovar Bovismorbificans is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This serovar thrives at an optimal temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts. As a chemoorganotroph, it utilizes organic compounds as an energy source, reflecting its adaptation to a host-associated habitat where it likely interacts with complex organic material within the host environment.↵↵The microaerophilic nature of S. Bovismorbificans suggests a specialized ecological niche, requiring low levels of oxygen for optimal growth. This trait may influence its survival and pathogenic potential within the gastrointestinal tract of hosts, where oxygen concentrations are typically lower than in the environment. The formation of chains could facilitate interactions with other microbial species within the host, potentially influencing microbial community dynamics. Overall, the specific traits of Salmonella enterica subsp. enterica serovar Bovismorbificans highlight its adaptation to a host-associated lifestyle and suggest a role in the complex interplay of microbial populations within the gastrointestinal ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58097 CQPC00000000.1 Bac0001457 Actinomadura viridilutea str. DSM 44433 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura viridilutea 45 thermophilic spore-forming 58112 PVNI00000000.1 Bac0001458 Glycomyces harbinensis Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces harbinensis 29 mesophilic 58114 FNAD00000000.1 Bac0001459 Streptomyces canus str. DSM 40017 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces canus 58343 LMWU00000000.1 Bac0001460 Streptomyces canus str. DSM 40275 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces canus 58343 LMWO00000000.1 Bac0001461 Salmonella enterica subsp. enterica serovar Anatum "Salmonella enterica subsp. enterica serovar Anatum is a Gram-negative bacterium characterized by its spirilla shape and the tendency to form chains or exist as singles. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitats. As a chemoorganotroph, S. Anatum derives its energy from organic compounds, reflecting its adaptation to environments rich in organic matter, typically within the gastrointestinal tracts of hosts.↵↵The organism is microaerophilic, meaning it requires reduced levels of oxygen for growth, which may provide insights into its ecological niche within host environments where oxygen concentrations are often lower than atmospheric levels. This trait suggests a specialized adaptation that allows S. Anatum to exploit specific ecological niches within the host, potentially leading to interactions with the host's microbiome and immune responses.↵↵Understanding the growth conditions and ecological preferences of S. enterica serovar Anatum is crucial for comprehending its role in microbe-host dynamics. The microaerophilic requirement, in particular, highlights its potential interactions in anaerobic or low-oxygen environments, which may have implications for its survival and proliferation in diverse ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58712 QDLA00000000.1 Bac0001462 Rickettsiella grylli Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Coxiellaceae Rickettsiella Rickettsiella grylli 59196 AAQJ00000000.2 Bac0001463 Salmonella enterica subsp. enterica "Salmonella enterica subsp. enterica is a Gram-negative bacterium characterized by its spirilla shape and the ability to arrange in chains or as singles. This microbe is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. The optimal growth temperature for S. enterica subsp. enterica is approximately 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting a close association with host environments. This bacterium exhibits a microaerophilic oxygen requirement, thriving in conditions with reduced oxygen levels, which is often found in certain host tissues or gastrointestinal tracts.↵↵The habitat of S. enterica subsp. enterica is predominantly host-associated, indicating its prevalence in living organisms, particularly in those of the animal kingdom. This relationship highlights its potential role in microbial communities within host organisms, where it may interact with other microbial species and influence host health. Understanding the ecological dynamics of S. enterica subsp. enterica within its host can provide valuable insights into its role in microbial interactions and its adaptation strategies in microenvironments characterized by fluctuating nutrient availability and oxygen levels." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59201 UGXR00000000.1 Bac0001464 "Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59201 NZ_CP039559.1 Bac0001465 Salmonella enterica subsp. arizonae "Salmonella enterica subsp. arizonae is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This subspecies is known to thrive optimally at a temperature of 37.0 °C, which aligns with the physiological conditions commonly found in warm-blooded hosts. As a chemoorganotroph, S. enterica subsp. arizonae derives its energy from organic compounds, highlighting its adaptation to nutrient-rich environments typically associated with host organisms.↵↵The microaerophilic nature of this bacterium indicates that it requires reduced oxygen levels for growth, which may reflect its ecological niche within the gastrointestinal tracts of various hosts. This oxygen requirement could influence its metabolic processes and interactions with the host microbiota, potentially providing insights into its role within the broader microbial community.↵↵Understanding the ecological dynamics of S. enterica subsp. arizonae may shed light on its potential interactions with other microbial species present in host-associated environments, emphasizing the importance of studying such microorganisms within the context of their natural habitats. The unique adaptation strategies of this subspecies to microaerophilic conditions could also offer insights into its survival mechanisms and metabolic flexibility in varying host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59203 RSJU00000000.1 Bac0001466 Salmonella enterica subsp. diarizonae "Salmonella enterica subsp. diarizonae is a Gram-negative bacterium characterized by its spirilla shape and a tendency to arrange in chains or singularly. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of many host organisms. As a chemoorganotroph, S. enterica subsp. diarizonae derives its energy from organic compounds, indicating its dependence on host-associated environments for nutrient acquisition. ↵↵The microaerophilic nature of this subspecies suggests that it requires low levels of oxygen for growth, which is consistent with its habitat in association with hosts, where oxygen levels may be variable and often lower than atmospheric concentrations. This adaptation may facilitate its survival and proliferation within the gastrointestinal tract of various hosts.↵↵Overall, the traits of S. enterica subsp. diarizonae highlight its specialized niche within host-associated environments, where it may interact with the host microbiota and contribute to the complex dynamics of microbial communities. Understanding these interactions can provide insights into the ecological roles of this microbe and its potential implications for host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59204 RSHK00000000.1 Bac0001467 Salmonella enterica subsp. indica "Salmonella enterica subsp. indica is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in chains or as single cells. This subspecies is adapted to thrive at an optimal temperature of 37.0°C, which aligns with the typical physiological temperature of warm-blooded hosts. As a chemoorganotroph, S. enterica subsp. indica derives its energy from organic compounds, indicating a potential dependency on the metabolic byproducts from its host organisms.↵↵The habitat of S. enterica subsp. indica is primarily host-associated, suggesting its ecological role is closely linked to interactions with animal or possibly human hosts. This relationship may facilitate its survival and propagation within a specific ecological niche, which could involve the utilization of host-derived nutrients for growth.↵↵The microaerophilic nature of this bacterium indicates a preference for environments with reduced oxygen levels, which may be found in certain anatomical sites of host organisms where oxygen is limited. This trait could play a significant role in its ecological dynamics, potentially influencing its interactions with the host microbiota and other microbial communities present in similar environments.↵↵Overall, the unique combination of metabolic capabilities and ecological preferences positions Salmonella enterica subsp. indica as an organism that may contribute to the complex interplay of microbial life within host-associated habitats, highlighting its potential importance in understanding host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59207 UGYB00000000.1 Bac0001468 Methanobacterium subterraneum Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum 59277 NZ_CP017768.1 Bac0001469 Streptococcus macedonicus "Streptococcus macedonicus is a Gram-positive, spherical-shaped bacterium that thrives in a mesophilic temperature range, between 25°C and 40°C. As a chemoheterotroph, it obtains its energy by breaking down organic compounds and using them as a source of carbon and energy. This microbe is a facultative anaerobe, meaning it can survive in the presence or absence of oxygen, although it grows more optimally in aerobic conditions. As a Streptococcus species, S. macedonicus is found in various body sites, including the oral cavity, respiratory tract, gastrointestinal tract, female genital tract, and skin. It is ubiquitous in all species, with the highest frequencies found in humans and primates. S. macedonicus produces energy through cellular respiration, utilizing glucose or other organic compounds as its primary energy source. It is capable of fermenting glucose to produce lactic acid, a process that occurs in the absence of oxygen. This microbe is a component of the normal flora in many individuals, and its presence has been linked to various physiological processes, including immune system development and the maintenance of gut health. It has also been studied for its potential to produce antimicrobial peptides and proteins with bioactive properties. Despite its widespread distribution, S. macedonicus is an understudied organism, and further research is needed to fully understand its ecological role and physiological properties. Nevertheless, its ability to thrive in various environments and its potential to influence human health make it an important subject of ongoing scientific inquiry." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus macedonicus Positive Cocci No 1 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 59310 PEBN00000000.1 Bac0001470 Fibrobacter succinogenes subsp. succinogenes S85 "Fibrobacter succinogenes (strain ATCC 19169 / S85) is an anaerobic, cellulolytic Gram-negative bacterium. It is one of the three most predominant cellulolytic organisms in the rumen. F. succinogenes is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and F. succinogenes has devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose. In addition, the glycocalyx protects against protozoan attack of the bacterium as well as protease attack of the cellulase enzymes. Increasing cellulose degradation is an important goal in industrial processes. (Adaptated from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=32617). (EBI Integr8)" Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes S85 Negative Rod No 1 2 Anaerobic Mesophilic HostAssociated Free living Singles Nonsporulating No 59374 NC_017448.1 Bac0001471 Actinotignum schaalii str. CCUG 27420 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinotignum Actinotignum schaalii bladder 59505 NZ_CP008802.1 Bac0001472 Pseudomonas syringae pv. pisi "Pseudomonas syringae pv. pisi is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolism as a heterotroph. This microbial species is found in various habitats, indicating a broad ecological versatility. The ability to thrive in multiple environments suggests that Pseudomonas syringae pv. pisi may play a significant role in nutrient cycling and possibly interact with diverse microbial communities. Its aerobic nature implies a reliance on oxygen for energy production, further emphasizing its adaptability to environments where oxygen is present. Understanding the ecological roles of such bacteria can provide insights into their potential contributions to the dynamics of soil and plant health, as well as their responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 59510 RBOF00000000.1 Bac0001473 Pseudomonas syringae pv. maculicola str. KN91 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 59511 LGLF00000000.1 Bac0001474 Pseudomonas syringae pv. maculicola Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 59511 RBOO00000000.1 Bac0001475 Pseudomonas syringae pv. maculicola str. YM7930 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 59511 LGLD00000000.1 Bac0001476 Paracoccus marcusii str. CGMCC 1.8602 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus marcusii 59779 VDDD00000000.1 Bac0001477 Mycolicibacterium novocastrense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium novocastrense 59813 LQIJ00000000.1 Bac0001478 Prevotella sp. "Prevotella sp. is a genus of anaerobic, fermentative, and proteolytic bacteria typically found in the intestinal microflora of animals, including humans. These microbes have adapted to thrive in the oxygen-deprived environments of the intestinal tract, where they play a crucial role in the digestion and metabolism of complex carbohydrates and proteins. As chemoheterotrophs, Prevotella sp. derive their energy by breaking down organic compounds from their host's diet. Characteristically, Prevotella sp. exist primarily as singles, displaying a nonsporulating nature that allows them to maintain their viability in the stable conditions of the gut. They are optimally active at a temperature of 37°C, which coincides with the average body temperature of warm-blooded hosts, further facilitating their symbiotic role in digestion.In addition to their digestive functions, Prevotella species are known to influence the host’s immune system and gut health. They can interact with other gut microbiota, potentially affecting nutrient absorption and influencing the host's metabolic processes. A unique ecological insight into Prevotella sp. lies in their association with dietary habits; changes in the composition of Prevotella species have been linked to variations in diet, particularly in individuals consuming high-fiber versus high-fat diets. This suggests that Prevotella not only aids in nutrient breakdown but may also serve as an indicator of dietary patterns and overall health in the host organism." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. Negative No 1 Anaerobic 37 Chemoheterotroph Animal Intestinal Microflora Singles Nonsporulating 59823 DLZV00000000.1 Bac0001479 Paenibacillus peoriae str. HS311 "Paenibacillus peoriae strain HS311 is a Gram-positive, rod-shaped bacterium that thrives in various soil environments, particularly within the rhizosphere of wheat. As a facultative anaerobe, this microbe can adapt to both aerobic and anaerobic conditions, allowing it to effectively colonize diverse soil habitats. ↵↵The rhizosphere, which is the region of soil influenced by root secretions and associated microorganisms, provides a unique ecological niche for Paenibacillus peoriae HS311. The presence of this strain in such environments suggests its potential role in plant-microbe interactions, possibly influencing root health and nutrient uptake. The soil ecosystem, particularly in relation to agricultural crops like wheat, may benefit from the presence of this bacterium through contributions to soil fertility and plant growth promotion.↵↵Given its habitat and metabolic flexibility, Paenibacillus peoriae HS311 may play a significant role in the microbiome of the wheat rhizosphere, contributing to soil health and potentially enhancing crop resilience. Further studies on its interactions within this ecosystem could uncover valuable insights into sustainable agricultural practices and soil management strategies." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus peoriae positive Rod Yes 1 facultative anaerobe rhizosphere; rhizosphere soil; soil; wheat rhizosphere 59893 NZ_CP011513.1 Bac0001480 Prochlorococcus marinus subsp. pastoris str. CCMP1986 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus CCMP1986 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 59919 NC_005072.1 Bac0001481 Prochlorococcus marinus str. MIT 9303 str. MIT9303 "Prochlorococcus marinus strain MIT 9303 is a Gram-negative, coccoid cyanobacterium that primarily utilizes photosynthesis as its energy source. This microbe is commonly found in aquatic environments, where it plays a significant role in marine ecosystems. Prochlorococcus marinus is notable for its small cell size and high abundance in oligotrophic oceanic waters, contributing substantially to global primary production. ↵↵As a photosynthetic organism, Prochlorococcus marinus possesses a unique pigment composition that allows it to efficiently capture light energy, even in low-light conditions, which is characteristic of its deep-water habitats. Its adaptation to various light intensities and nutrient conditions underlines its ecological significance, particularly in influencing biogeochemical cycles and carbon fixation in the oceans.↵↵Research on Prochlorococcus marinus has revealed its potential for studying microbial diversity and adaptation in marine environments. The strain MIT 9303, in particular, provides valuable insights into the genetic and physiological properties that enable survival in nutrient-limited conditions. This highlights the broader ecological roles of cyanobacteria in shaping marine food webs and their contributions to atmospheric oxygen production. Understanding the characteristics and behaviors of Prochlorococcus marinus can enhance our knowledge of microbial ecology and the impact of climate change on marine microorganisms." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 59922 NC_008820.1 Bac0001482 Prochlorococcus marinus str. SB "Prochlorococcus marinus str. SB is a Gram-negative, coccoid cyanobacterium that thrives in aquatic environments, utilizing photosynthesis as its primary energy source. This microorganism is recognized for its significant role in marine ecosystems, particularly in oligotrophic waters, where it contributes to primary production and the global carbon cycle. The unique cellular morphology of P. marinus str. SB, characterized by its coccal shape, is advantageous for nutrient uptake in the nutrient-poor conditions typically found in its habitat.↵↵As a photosynthetic organism, Prochlorococcus marinus str. SB possesses specialized pigments that allow it to efficiently capture light energy, even in low-light environments. This adaptability not only facilitates its survival but also underlines its ecological importance, as it forms the base of the food web in many marine ecosystems. The presence and abundance of this strain in various aquatic environments highlight its potential impact on biogeochemical processes, particularly in the context of climate change, where shifts in oceanic phytoplankton communities can influence carbon sequestration rates.↵↵In summary, Prochlorococcus marinus str. SB exemplifies a successful adaptation to nutrient-limited aquatic habitats through its photosynthetic capabilities and unique morphology, underscoring its critical role in maintaining the balance of marine ecosystems and contributing to global biogeochemical cycles." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 59926 JNAS00000000.1 Bac0001483 Helicobacter ganmani Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter ganmani 60246 NXLS00000000.1 Bac0001484 Lactiplantibacillus paraplantarum Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus paraplantarum 60520 QMJG00000000.1 Bac0001485 Paraburkholderia phenazinium Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia phenazinium 60549 FSRU00000000.1 Bac0001486 Burkholderia pyrrocinia str. NFIX32 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pyrrocinia 60550 QJJY00000000.1 Bac0001487 Burkholderia pyrrocinia str. XXB-24 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pyrrocinia 60550 SGIR00000000.1 Bac0001488 Burkholderia pyrrocinia str. DSM 10685 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pyrrocinia 60550 NZ_CP011504.1 Bac0001489 Burkholderia pyrrocinia str. Lyc2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pyrrocinia 60550 JPWP00000000.1 Bac0001490 Burkholderia vietnamiensis "Burkholderia vietnamiensis is a Gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 25°C to 40°C, classified as a mesophile. As a chemoheterotroph, it obtains its energy by breaking down organic compounds and using oxygen as its terminal electron acceptor, producing ATP through aerobic respiration. This microbe can be found in various body sites, including the respiratory, gastrointestinal, and genitourinary tracts, as well as in the soil and water environments. Its Gram-negative stain indicates the presence of an outer membrane containing lipopolysaccharides, which aids in the interactions with its environment. The rod-shaped morphology, also known as a bacillus, is characteristic of many bacteria and allows for efficient movement and adherence to surfaces. Burkholderia vietnamiensis is an obligate aerobe, requiring high levels of oxygen to survive. In environments with low oxygen levels, it would succumb to oxidative stress and eventual cell death. Its reliance on oxygen for energy production is reflected in its preference for aerobic growth conditions, utilizing oxygen as its terminal electron acceptor. This microbe has been isolated from various sources, including humans, animals, and the environment, highlighting its ability to adapt and thrive in diverse ecological niches. Its presence in both human and animal hosts can indicate various diseases, including pneumonia, septicemia, and bacteremia, emphasizing the need for effective diagnostic tools and therapeutic strategies. In addition to its role in disease, Burkholderia vietnamiensis has been recognized as a potential tool for bioremediation, capable of degrading pollutants such as polycyclic aromatic hydrocarbons (PAHs) and pesticides. Its ability to break down these compounds makes it a valuable asset for environmental cleanup efforts." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis Negative Rod Yes 2 Facultative aerobe Mesophilic Multiple Free living 60552 LOWM00000000.1 Bac0001491 Phaeobacter gallaeciensis str. JL2886 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter gallaeciensis 60890 NZ_CP015124.1 Bac0001492 Staphylococcus succinus Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus succinus 61015 PZFN00000000.1 Bac0001493 Holdemania filiformis "Holdemania filiformis is a Gram-positive, filamentous microbe that thrives in mesophilic environments, namely temperatures between 25-40°C. This microbe is a chemoheterotroph, meaning it utilizes organic compounds as its energy source, producing ATP through anaerobic fermentation. Specifically, H. filiformis utilizes cellulose and other plant polymers as its primary source of energy. As a filamentous microbe, H. filiformis exhibits a unique morphology, comprising long, branching cells that range from 1-10 μm in diameter. This peculiar shape allows the microbe to colonize diverse environments, including soil, sediment, and even the human gut. H. filiformis is an obligate anaerobe, meaning it requires a lack of oxygen to survive and reproduce. In fact, the microbe is capable of reducing nitrate to nitrite, a process that is typically associated with anaerobic conditions. This unique adaptation allows H. filiformis to thrive in environments where oxygen levels are limited, such as in the gastrointestinal tract or in sedimentary layers. Interestingly, H. filiformis has been found to inhabit a wide range of body sites across various species, including the human gut, where it plays a role in degrading complex carbohydrates and producing short-chain fatty acids. The microbe's ability to thrive in diverse environments and its unique metabolic properties make it a fascinating subject for further study. Despite being a relatively newly discovered microbe, H. filiformis has already demonstrated potential applications in biotechnology, including the breakdown of cellulose and the production of biofuels. Further research on this microbe could unlock new insights into its role in ecosystems and potential uses in biotechnology and medicine." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemania Holdemania filiformis Positive Anaerobe 61171 QRUP00000000.1 Bac0001494 Dehalococcoides mccartyi str. 11a5 "Dehalococcoides mccartyi strain 11a5 is a Gram-positive, coccoid bacterium that typically exists as single cells and is classified as a chemolithotroph. This strain thrives optimally at a temperature of 35.0°C and is strictly anaerobic, indicating that it does not require oxygen for growth and may be inhibited by its presence. ↵↵D. mccartyi strain 11a5 can be found in diverse habitats, suggesting its adaptability to various environmental conditions. As a chemolithotroph, this microbe derives its energy from inorganic compounds, which positions it as a key player in biogeochemical cycles, particularly in the context of bioremediation processes where it may contribute to the detoxification of halogenated compounds. ↵↵The specific ecological roles of D. mccartyi strain 11a5 highlight its potential utility in environmental microbiology, particularly in anaerobic environments where organic halides are present. This characteristic underscores the importance of understanding its metabolic pathways and interactions within microbial communities, particularly for applications in environmental clean-up strategies." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi Positive Cocci No 1 1 Anaerobe 35 Chemolithotroph Mesophilic Multiple Free living Singles 61435 NZ_CP011127.1 Bac0001495 Dehalococcoides mccartyi str. MB "Dehalococcoides mccartyi strain MB is a Gram-positive, coccoid bacterium that typically exists as single cells. This microbe thrives optimally at a temperature of 35.0°C and is classified as an anaerobe, indicating that it does not require oxygen for growth and may even be inhibited by its presence. D. mccartyi str. MB is a chemolithotroph, deriving its energy from inorganic compounds, which places it in a unique position within microbial communities, particularly in environments rich in halogenated compounds.↵↵This strain is known to inhabit various anaerobic environments, suggesting its versatility and potential adaptability to different ecological niches. Its ability to utilize inorganic substrates for energy may play a crucial role in biogeochemical cycling, particularly in environments contaminated with halogenated organic pollutants, where it may contribute to bioremediation processes. The metabolic capabilities of D. mccartyi str. MB render it a significant organism for studies focused on the degradation of environmental contaminants, thereby highlighting its potential utility in environmental microbiology and biotechnology." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi Positive Cocci No 1 1 Anaerobe 35 Chemolithotroph Mesophilic Multiple Free living Singles 61435 JGYD00000000.1 Bac0001496 Dehalococcoides mccartyi "Dehalococcoides mccartyi is a Gram-positive, cocci-shaped bacterium that typically exists as single cells and is recognized for its chemolithotrophic metabolism, utilizing inorganic compounds as energy sources. This microorganism thrives optimally at a temperature of approximately 35.0°C and is strictly anaerobic, indicating its reliance on environments devoid of oxygen for growth and metabolic activity. ↵↵D. mccartyi is often found in diverse habitats, particularly those impacted by halogenated organic compounds, where it plays a crucial role in bioremediation processes. It is well-known for its ability to reductively dechlorinate a variety of chlorinated solvents, which makes it a significant player in environmental microbiology, particularly in the context of detoxifying contaminated groundwater and soil.↵↵The metabolic versatility of D. mccartyi, coupled with its unique ecological niche, underscores its importance in biogeochemical cycles and offers insights into microbial adaptations in anaerobic environments. Its presence in multiple habitats highlights its potential utility in engineered bioremediation systems aimed at addressing environmental pollution caused by halogenated hydrocarbons." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi Positive Cocci No 1 1 Anaerobe 35 Chemolithotroph Mesophilic Multiple Free living Singles 61435 NZ_CP019968.1 Bac0001497 Allochromatium warmingii Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Allochromatium Allochromatium warmingii anaerobic 61595 FNOW00000000.1 Bac0001498 Enterobacter asburiae "Enterobacter asburiae is a Gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures, classifying it as a mesophilic heterotroph. As part of the Enterobacter genus, this microbe can be found in various environments including soil, water, and within the gastrointestinal tracts of humans and animals, indicating its versatility across different ecological niches. E. asburiae is a facultative anaerobe, which allows it to adapt to both aerobic and anaerobic conditions, utilizing oxygen for respiration when available but also capable of fermentation in low-oxygen environments. The Gram-negative characteristic of Enterobacter asburiae implies that it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contributes to its virulence and resistance to certain antibiotics. Its rod shape facilitates motility, which is important for colonization and establishing infections in various host tissues. The mesophilic temperature preference indicates that it is adapted to moderate thermal conditions, typically thriving between 20°C and 45°C, making it well-suited for human-associated environments. As a heterotroph, E. asburiae relies on organic compounds for its nutritional needs, often utilizing sugars and amino acids. Its facultative anaerobic metabolism allows it to thrive in diverse environments, from oxygen-rich habitats to nutrient-rich anaerobic conditions, such as those found in the intestines of mammals. In clinical contexts, E. asburiae has been associated with opportunistic infections, particularly in immunocompromised individuals, where it may lead to urinary tract infections or wound infections. Its ability to adapt quickly to a variety of environments and conditions makes it a significant organism in both environmental and clinical microbiology studies, highlighting its role in the dynamics of microbial communities and potential human health implications." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter asburiae Negative Rod No Facultative anaerobe wastewater 61645 LJEY00000000.2 Bac0001499 Natronorubrum bangense str. Natronorubrum bangense JCM 10635 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum bangense 61858 NZ_CP031309.1 Bac0001500 Candidatus Endobugula sertula Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Candidatus Endobugula Candidatus Endobugula sertula 62101 MDLC00000000.1 Bac0001501 Shewanella baltica str. M1 "Shewanella baltica str. M1 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or as singles. This microbe functions as a heterotroph, utilizing organic compounds as its primary energy source, which enables it to thrive in a variety of habitats. Notably, S. baltica str. M1 exhibits facultative anaerobic metabolism, allowing it to adapt to both aerobic and anaerobic environments.↵↵The versatility in energy acquisition and oxygen utilization suggests that S. baltica str. M1 may play significant roles in biogeochemical cycles, particularly in environments where organic matter decomposition occurs. Its presence in diverse habitats implies a potential for interaction with various microbial communities and ecosystems. Understanding the metabolic capabilities and ecological niches of S. baltica str. M1 can provide insights into its role in nutrient cycling, particularly in marine and freshwater ecosystems where organic material is abundant." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Multiple Free living Pairs - Singles 62322 LWED00000000.1 Bac0001502 Vibrio pectenicida str. CAIM 594 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio pectenicida 62763 RSFA00000000.1 Bac0001503 Acinetobacter baylyi ADP1 "Acinetobacter baylyi ADP1 is a Gram-negative bacterium that thrives optimally at 37.0°C and exhibits aerobic metabolic capabilities. This microbe is notable for its versatility, as it can be found in multiple habitats, suggesting a broad ecological niche. As an aerobic organism, A. baylyi ADP1 requires oxygen for its growth and energy production, which aligns with its metabolic pathways that are suited for environments where oxygen is available.↵↵The ability of A. baylyi ADP1 to adapt to various habitats may be linked to its genetic plasticity and competence for natural transformation, allowing it to incorporate exogenous DNA from its surroundings. This trait enhances its adaptability and may facilitate the acquisition of new metabolic capabilities, thus promoting survival in diverse ecological settings. The bacterium's resilience and adaptability underscore its potential role in bioremediation and as a model organism for studying bacterial adaptation mechanisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baylyi Negative No 1 2 Aerobe 37 Mesophilic Multiple 62977 NC_005966.1 Bac0001504 Zobellia galactanivorans Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zobellia Zobellia galactanivorans aerobic 63186 NC_015844.1 Bac0001505 Nostoc punctiforme PCC 73102 "Nostoc punctiforme is a nitrogen-fixing cyanobacterium, growing autotrophically with CO2 as the carbon source, utilizing an oxygen-producing photosynthetic mechanism for the generation of ATP and reductant. The order Nostocales grow as unbranched filaments and produce up to three kinds of differentiated cells. Heterocysts differentiate in response to the lack of nitrogen in the environment and are the sites of nitrogen fixation (3-10% of total cells). Nostoc species also produce relatively short, motile filaments called hormogonia and spore-like structures termed akinetes in response to nutrient limitation other than nitrogen. Nostoc species are widely distributed in illuminated portions of the biosphere, including fresh waters and tropical, temperate and polar terrestrial systems; they are rarely found in marine habitats. Growth is often as a colony of filaments within a gelatinous matrix. Many Nostoc species occur in symbiotic associations with fungi to form lichens and with representatives of each of the major phylogenetic groups of plants. They are major contributors to the sequestration of CO2 in organic compounds, especially in nutrient poor and extreme environments.N. punctiforme strain ATCC 29133 (also known as PCC 73102) has a complex life cycle with differentiation of heterocysts, hormogonia and akinetes. The strain was isolated from symbiotic association with the gymnosperm cycad Macrozamia sp. N.punctiforme grows rapidly under completely dark heterotrophic conditions, with sucrose, glucose or fructose as the carbon source. In addition to its symbiotic and heterotrophic competence, it is amenable to genetic manipulation. It contains an insertion element which pops out under certain growth conditions. When it pops out gene Npun_R0414, the nitrogenase molybdenum-iron protein alpha chain NifD, is put together in one piece (adapted from http://genome.jgi-psf.org/finished_microbes/nospu/nospu.home.html). (HAMAP: NOSP7)" Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc punctiforme PCC 73102 Negative Filamentous Yes 1 2 Aerobe Mesophilic Multiple Symbiotic No 63737 NC_010629.1 Bac0001506 Halobacterium salinarum NRC-1 "Halobacterium salinarum NRC-1 is a Gram-negative, rod-shaped archaeon that thrives in specialized habitats, typically characterized by high salinity. This organism is a nonsporulating microbe that exhibits a preference for an optimal growth temperature of 42.0°C. As a chemoorganotroph, Halobacterium salinarum NRC-1 derives its energy from organic compounds, which is particularly relevant in its saline environment where organic matter may be limited. ↵↵Halobacterium salinarum NRC-1 is an aerobe, indicating its reliance on oxygen for metabolic processes, which further underscores its adaptation to environments where oxygen is available. The unique combination of its morphological characteristics, energy acquisition strategy, and oxygen requirements highlights its specialized role in salt-rich ecosystems.↵↵This organism's adaptations not only allow it to withstand extreme salinity but also position it as a potential model for studying extremophilic adaptations and the metabolic pathways utilized by microbes in extreme environments. The insights gained from Halobacterium salinarum NRC-1 could enhance our understanding of microbial life in similar extreme conditions, shedding light on the evolutionary processes that enable survival and function in such specialized niches." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum Negative Rod No 1 1 Aerobe 42 Chemoorganotroph Mesophilic Specialized Free living Nonsporulating 64091 NC_001869.1 Bac0001507 Bacillus pseudomycoides "Bacillus pseudomycoides is a Gram-positive, rod-shaped microorganism that thrives in a moderate temperature range, typically between 20°C to 45°C, making it a mesophile. This bacterium is a chemotroph, utilizing organic compounds as its energy source and carbon source. Specifically, it is a chemoheterotroph, which means it obtains its energy by breaking down pre-existing organic molecules. As a chemotroph, B. pseudomycoides produces energy through cellular respiration, a process that involves the breakdown of glucose and other organic molecules to produce ATP. This process occurs in the presence of oxygen, as B. pseudomycoides is an obligate aerobe, requiring oxygen to survive and thrive. This is in contrast to some other microbes that can survive without oxygen or even thrive in its absence. B. pseudomycoides can be found in a wide range of environments, including soil, water, and the gut of various animals, including humans. Its ability to colonize various body sites in all possible species highlights its adaptability and ability to thrive in diverse ecosystems. In addition to its ecological importance, B. pseudomycoides has gained attention for its potential applications in biotechnology. Its ability to produce antibiotics and other bioactive compounds makes it a promising candidate for developing new therapeutics. Furthermore, its ability to degrade pollutants and organic matter has led to research into its potential use in bioremediation efforts. Overall, Bacillus pseudomycoides is a fascinating microorganism with a diverse range of characteristics that enable it to thrive in various environments. Its unique traits and potential applications make it an important area of study for microbiologists and researchers in related fields." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 64104 NVEY00000000.1 Bac0001508 Bacillus pseudomycoides str. Rock1-4 "Bacillus pseudomycoides strain Rock1-4 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores, enabling resilience in various environmental conditions. This strain thrives optimally at a temperature of 40.0°C, indicating a preference for relatively warm habitats. As a chemoheterotroph, B. pseudomycoides str. Rock1-4 relies on organic compounds for energy and carbon, which it acquires from its soil environment.↵↵The sporulation capability of B. pseudomycoides is a significant trait that allows it to withstand adverse conditions, such as nutrient depletion or extreme temperatures, which are commonly encountered in soil ecosystems. This trait not only contributes to its survival but may also play a critical role in the cycling of nutrients in its habitat, facilitating interactions with other soil microorganisms.↵↵Given its ecological niche and metabolic characteristics, B. pseudomycoides strain Rock1-4 may contribute to soil health by participating in the decomposition of organic matter, thus influencing soil structure and fertility. Furthermore, the sporulation process may aid in the dispersal of this bacterium across varying soil environments, allowing it to colonize new areas efficiently. Understanding the traits of B. pseudomycoides str. Rock1-4 enhances our knowledge of microbial dynamics in soil ecosystems and underscores the importance of bacterial diversity in maintaining ecological balance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 64104 ACMV00000000.1 Bac0001509 Xanthomonas oryzae pv. oryzae str. IX-280 "Xanthomonas oryzae pv. oryzae str. IX-280 is a Gram-negative, rod-shaped bacterium that is primarily associated with host environments, indicating a specific relationship with its plant hosts. As an aerobic organism, it requires oxygen for its metabolic processes, which aligns with the typical characteristics of many bacteria within the Xanthomonadaceae family.↵↵The habitat of Xanthomonas oryzae pv. oryzae str. IX-280 suggests its role in specific plant interactions, likely contributing to its ecological niche within agricultural systems. This strain, like other members of its species, may exhibit adaptations that facilitate its survival and proliferation in host-associated environments, potentially influencing the health and yield of crops, particularly in rice cultivation.↵↵Understanding the traits of Xanthomonas oryzae pv. oryzae str. IX-280 can provide insights into its ecological interactions and the dynamics of plant-microbe relationships. Further research into its metabolic pathways and interactions with host plants could elucidate its role in the ecosystem, as well as its potential implications for sustainable agriculture practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living 64187 NZ_CP019227.1 Bac0001510 Borreliella bissettiae str. CO275 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella bissettiae 64897 JNBW00000000.1 Bac0001511 Gloeothece citriformis PCC 7424 "Gloeothece citriformis PCC 7424 is a Gram-negative, coccoid cyanobacterium characterized by its occurrence as single cells in aquatic environments. This organism is an autotroph, utilizing light energy for photosynthesis, which allows it to thrive in various aquatic habitats, including freshwater systems. Gloeothece citriformis demonstrates facultative anaerobic capabilities, enabling it to adapt to varying oxygen levels in its environment. ↵↵The coccoid shape and solitary arrangement of Gloeothece citriformis may provide advantages in nutrient uptake and dispersion within its habitat, facilitating its survival in diverse ecological niches. Furthermore, as a photosynthetic autotroph, this microbe plays a significant role in primary production, contributing to the oxygenation of aquatic systems and serving as a foundational organism in food webs. The ability of Gloeothece citriformis to tolerate fluctuating oxygen levels may also suggest a resilience that could be vital in ecosystems experiencing changes in water quality or environmental conditions. Understanding the ecological contributions of Gloeothece citriformis is essential for comprehending the dynamics of aquatic ecosystems and the role of cyanobacteria in global carbon and nitrogen cycles." Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Gloeothece Gloeothece citriformis Negative Cocci No 1 2 Facultative Autotroph Mesophilic Aquatic Free living Singles 65393 NC_011734.1 Bac0001512 Erwinia tracheiphila Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia tracheiphila 65700 NZ_CP013970.1 Bac0001513 Komagataeibacter oboediens Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter oboediens 65958 NKTX00000000.1 Bac0001514 Acetobacter pomorum str. LHT 2458 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pomorum 65959 PEBQ00000000.1 Bac0001515 Acetobacter pomorum Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pomorum 65959 NZ_CP023190.1 Bac0001516 Streptomyces eurocidicus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces eurocidicus 29 mesophilic spore-forming 66423 LGUI00000000.1 Bac0001517 Methanobrevibacter oralis str. DSM 7256 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter oralis 66851 LWMU00000000.1 Bac0001518 Streptomyces chattanoogensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces chattanoogensis 29 mesophilic 66876 LGKG00000000.1 Bac0001519 Legionella waltersii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella waltersii microaerophile 66969 LNZB00000000.1 Bac0001520 Streptomyces albus subsp. albus "Streptomyces albus subsp. albus is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its ability to produce a wide array of bioactive compounds. This subspecies is characterized by its filamentous growth form, a hallmark of many members of the Streptomyces genus. The Gram-positive nature of S. albus subsp. albus indicates a thick peptidoglycan layer in its cell wall, which is typical of this group of bacteria and can influence its interactions with the environment.↵↵This microbe is known for its ability to thrive in various terrestrial habitats, often in soil, where it plays a crucial role in the decomposition of organic matter. The metabolic capabilities of S. albus subsp. albus allow it to utilize a range of substrates, contributing to nutrient cycling in its ecological niche. Furthermore, like other members of its genus, S. albus subsp. albus has significant potential in biotechnology, particularly in the production of antibiotics and other secondary metabolites that can be exploited for pharmaceutical applications.↵↵The ecological significance of Streptomyces albus subsp. albus extends beyond its role in organic matter decomposition; its interactions with other soil microorganisms can influence microbial community dynamics and soil health, illustrating its importance in maintaining ecological balance within its environment." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albus Positive 67257 LMZE00000000.1 Bac0001521 Streptomyces cavourensis str. TJ430 "Streptomyces cavourensis str. TJ430 is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its ability to produce a diverse array of bioactive compounds. This strain exhibits the characteristic filamentous morphology typical of its genus, contributing to its ecological role in soil environments where it is often found. The Gram-positive nature of S. cavourensis str. TJ430 suggests a robust cell wall structure, primarily composed of peptidoglycan, which is essential for maintaining cell integrity and providing resistance to environmental stresses.↵↵Streptomyces species, including S. cavourensis, are well known for their role in the biogeochemical cycling of nutrients and their interactions with other microorganisms in the soil. Additionally, they are prolific producers of secondary metabolites, which can have significant implications for agriculture and medicine due to their antibiotic properties. While specific metabolic pathways or the full range of secondary metabolites produced by S. cavourensis str. TJ430 have not been detailed, the genus is widely recognized for its contributions to natural product discovery.↵↵Given the ecological significance of Streptomyces species in soil ecosystems, S. cavourensis str. TJ430 may play a crucial role in promoting soil health and fertility, potentially enhancing plant growth and influencing microbial community dynamics. Further investigation into this strain could uncover novel compounds with applications in biotechnology and pharmacology, highlighting the importance of soil-dwelling actinomycetes in the pursuit of sustainable solutions." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cavourensis Positive 67258 NZ_CP030930.1 Bac0001522 Streptomyces alboflavus str. MDJK44 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces alboflavus 67267 NZ_CP023976.1 Bac0001523 Streptomyces cellostaticus str. DSM 40189 "Streptomyces cellostaticus str. DSM 40189 is a Gram-positive, spore-forming bacterium that exhibits optimal growth at 29.0 °C. This organism is part of the genus Streptomyces, which is well recognized for its capacity to produce a variety of bioactive compounds, including antibiotics. The ability to form spores is a critical survival mechanism for this microbe, allowing it to endure unfavorable environmental conditions and facilitating its dispersal in various habitats.↵↵As a member of the Actinobacteria phylum, S. cellostaticus demonstrates a filamentous growth form typical of many Streptomyces species. Its optimal temperature of 29.0 °C suggests a preference for moderately warm environments, which is consistent with the ecological niches often occupied by soil-dwelling actinobacteria. This temperature range may also influence its metabolic activities and the production of secondary metabolites.↵↵Given its traits, S. cellostaticus str. DSM 40189 may play a significant role in soil ecosystems, particularly in the degradation of complex organic materials such as cellulose. This ability not only contributes to nutrient cycling but also underscores the ecological importance of this organism in maintaining soil health and fertility. The potential for producing bioactive compounds further highlights its significance in biotechnological applications, particularly in the discovery of new antimicrobial agents." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cellostaticus Positive 29 mesophilic spore-forming 67285 LMWL00000000.1 Bac0001524 Streptomyces griseorubiginosus str. 3E-1 "Streptomyces griseorubiginosus str. 3E-1 is a Gram-positive bacterium belonging to the genus Streptomyces. This actinobacterial strain is characterized by its filamentous morphology, typical of many members of its genus, which are known for their complex life cycles and ability to produce a wide array of secondary metabolites. The Gram-positive nature of S. griseorubiginosus str. 3E-1 suggests the presence of a thick peptidoglycan layer in its cell wall, a trait that is often associated with the organism’s resilience in various environmental conditions.↵↵Streptomyces species are particularly notable for their role in soil ecosystems, where they play a significant part in the decomposition of organic materials. They are also renowned for their ability to synthesize antibiotics and other bioactive compounds, contributing to microbial competition and influencing microbial community dynamics. The unique metabolic capabilities of S. griseorubiginosus str. 3E-1 may provide insights into its ecological niche, particularly in nutrient cycling and the inhibition of other microbial species.↵↵In summary, the characterization of S. griseorubiginosus str. 3E-1 as a Gram-positive filamentous bacterium highlights its potential ecological roles in soil health and its significance in the discovery of novel bioactive compounds, which could have implications for biotechnological applications. Understanding the specific functions and interactions of this strain in its native habitat remains an important area for further research." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseorubiginosus Positive 67304 NZ_CP032427.1 Bac0001525 Streptomyces misionensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces misionensis 67331 FNTD00000000.1 Bac0001526 Streptomyces prasinopilosus "Streptomyces prasinopilosus is a Gram-positive, spore-forming bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This actinobacterial species is part of the diverse Streptomyces genus, known for its significant role in soil ecosystems and its ability to produce various bioactive secondary metabolites. The Gram-positive nature of S. prasinopilosus indicates a thick peptidoglycan layer in its cell wall, a characteristic that contributes to its structural integrity and resilience in various environmental conditions.↵↵As a spore-forming organism, S. prasinopilosus can enter a dormant state, allowing it to survive adverse conditions such as nutrient limitation or desiccation. This adaptation is particularly beneficial in fluctuating environments where nutrient availability can be unpredictable. The preference for aerobic conditions suggests that S. prasinopilosus plays a role in the cycling of organic materials in well-aerated soils, potentially contributing to the decomposition of plant matter and the release of nutrients.↵↵In terms of ecological significance, the ability of S. prasinopilosus to produce secondary metabolites can have implications for its interactions with other microbial communities and plants. These compounds are often involved in competitive interactions, which may help shape microbial diversity and functionality in its native habitat. Understanding the specific roles and contributions of S. prasinopilosus within its ecosystem could provide insights into the complex dynamics of soil microbiomes and their influence on soil health and fertility." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces prasinopilosus Gram-positive aerobic 29 mesophilic spore-forming 67344 FMZK00000000.1 Bac0001527 Streptomyces resistomycificus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces resistomycificus 67356 LGUS00000000.1 Bac0001528 Streptomyces sioyaensis str. DSM 40032 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sioyaensis 67364 SDIF00000000.1 Bac0001529 Streptomyces varsoviensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces varsoviensis 67373 LGUT00000000.1 Bac0001530 Citrobacter farmeri Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter farmeri 67824 NZ_CP022696.1 Bac0001531 Kitasatospora albolonga str. YIM 101047 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora albolonga 29 mesophilic 68173 NZ_CP020563.1 Bac0001532 Streptomyces globosus str. soil Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces globosus 68209 NZ_CP030864.1 Bac0001533 Streptomyces griseochromogenes str. ATCC 14511 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseochromogenes 29 mesophilic 68214 NZ_CP016279.1 Bac0001534 Streptomyces longwoodensis str. DSM 41677 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces longwoodensis 29 mesophilic spore-forming 68231 LMWS00000000.1 Bac0001535 Streptomyces regalis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces regalis 68262 LLZG00000000.1 Bac0001536 Streptomyces showdoensis str. ATCC 15227 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces showdoensis 29 mesophilic spore-forming 68268 LAQS00000000.1 Bac0001537 Rhodovulum robiginosum str. DSM 12329 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum iodosum anaerobic 68292 RWGU00000000.1 Bac0001538 Streptococcus infantis "Streptococcus infantis is a Gram-positive, spherical-shaped microbe, typically categorized as a mesophile, with a metabolism that is chemoheterotrophic, relying on organic compounds for energy, which it produces through facultative anaerobic respiration, and can be found in various body sites, including the respiratory, gastrointestinal, and genitourinary tracts, in humans and other species, as an obligate anaerobe that thrives in low-oxygen environments, but can also survive in environments with higher oxygen levels, albeit with reduced growth rates. ↵As a Gram-positive bacterium, Streptococcus infantis has a thick peptidoglycan cell wall, which provides it with a distinct purple stain under Gram staining. Its spherical shape allows it to maintain a large surface area, facilitating the uptake of nutrients and interaction with its environment. ↵The mesophilic temperature preference of Streptococcus infantis indicates that it grows best in moderate temperatures, typically between 20-40°C, making it well-suited to the human body's temperature range. ↵Its chemoheterotrophic metabolism means that it relies on external sources of organic compounds for energy, which it produces through fermentation and respiration, allowing it to thrive in a variety of environments. ↵The ability of Streptococcus infantis to inhabit various body sites, including the respiratory, gastrointestinal, and genitourinary tracts, highlights its adaptability and potential to cause infections in different parts of the body. ↵Streptococcus infantis plays a crucial role in the development of the human microbiome, particularly in infants, where it helps to establish a balanced gut microbiota, influencing the immune system's development and maturation." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe broiler farms 68892 JYOV00000000.1 Bac0001539 Cupriavidus basilensis str. 4G11 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus basilensis 68895 NZ_CP010537.1 Bac0001540 Thermococcus kodakarensis KOD1 "Thermococcus kodakaraensis strain KOD1. This organism was originally identified as Pyrococcus sp. strain KOD1. It was isolated from a solfatara on Kodakara Island, Japan. A gene disruption system has been developed for this organism. A thermostabile DNA polymerase is commercially available that was originally isolated from this organism and research is continuing to develop commercial applications for other heat-stable enzymes from this organism (NCBI BioProject: bp_list[1])" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus kodakarensis KOD1 Negative Cocci Yes 1 2 Anaerobe 85 Heterotroph Hyperthermophilic Specialized Free living Singles Nonsporulating 69014 NC_006624 Bac0001541 Enterobacter cancerogenus str. M004 "Enterobacter cancerogenus strain M004 is a Gram-negative bacterium characterized by its facultative anaerobic metabolism and its association with plant habitats. As a member of the Enterobacter genus, this strain exhibits versatility in its oxygen requirements, allowing it to thrive in both aerobic and anaerobic conditions. This adaptability is particularly advantageous in varied environments, where oxygen availability can fluctuate.↵↵The ecological role of Enterobacter cancerogenus M004 in plant habitats may involve interactions with plant systems, potentially influencing plant health and growth. While specific interactions or effects on plant physiology are not detailed, members of the Enterobacter genus are often implicated in promoting plant growth through mechanisms such as nitrogen fixation, production of phytohormones, or biocontrol of plant pathogens. These traits suggest that Enterobacter cancerogenus M004 may play a beneficial role in its ecosystem, contributing to plant resilience and productivity.↵↵Understanding the ecological functions of Enterobacter cancerogenus M004 within its plant habitat could provide insights into its potential applications in agriculture or environmental microbiology. Further research could elucidate its specific interactions with host plants and the broader implications for plant health and soil microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cancerogenus Negative Facultative anaerobe plants 69218 JRUP00000000.1 Bac0001542 Lelliottia nimipressuralis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Lelliottia Lelliottia nimipressuralis 69220 MKER00000000.1 Bac0001543 Erwinia mallotivora str. BT-MARDI Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia mallotivora 69222 JFHN00000000.1 Bac0001544 Aquamicrobium defluvii str. DSM 11603 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aquamicrobium Aquamicrobium defluvii 69279 SNZF00000000.1 Bac0001545 Aquamicrobium defluvii str. W13Z1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aquamicrobium Aquamicrobium defluvii 69279 JENY00000000.1 Bac0001546 Caulobacter henricii Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter henricii 69395 NZ_CP013002.1 Bac0001547 Petrotoga mobilis Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga mobilis 69499 LGFC00000000.1 Bac0001548 Natrinema pallidum Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema pallidum 69527 NZ_CP040637.1 Bac0001549 Moritella yayanosii Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Moritellaceae Moritella Moritella yayanosii 69539 NZ_LS483250.1 Bac0001550 Caulobacter sp. FWC2 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. FWC2 69664 PEBF00000000.1 Bac0001551 Caulobacter sp. FWC26 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. FWC26 69665 NZ_CP033874.1 Bac0001552 Caulobacter mirabilis str. FWC38 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter mirabilis aerobic 69666 NZ_CP024201.1 Bac0001553 Thomasclavelia cocleata Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Thomasclavelia cocleata 69824 FOIN00000000.1 Bac0001554 Tindallia magadiensis Bacillati Bacillota Clostridia Peptostreptococcales Tindalliaceae Tindallia Tindallia magadiensis anaerobic 69895 FOQA00000000.1 Bac0001555 Xanthomonas arboricola pv. pruni str. CITA 99 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 69929 RWYT00000000.1 Bac0001556 Mesorhizobium plurifarium str. ORS1032 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium plurifarium 69974 CCND00000000.1 Bac0001557 Mesorhizobium plurifarium str. DJ20 (STM8773) Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium plurifarium 69974 CCNB00000000.1 Bac0001558 Mesorhizobium plurifarium str. ORS3356 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium plurifarium 69974 CCMZ00000000.1 Bac0001559 Mesorhizobium plurifarium str. ORS3365 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium plurifarium 69974 CCNE00000000.1 Bac0001560 Mesorhizobium plurifarium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium plurifarium 69974 PYJP00000000.1 Bac0001561 Nitrospira sp. Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. 70125 DOJO00000000.1 Bac0001562 Staphylococcus condimenti Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus condimenti 70255 NZ_LR134360.1 Bac0001563 Staphylococcus condimenti str. DSM 11674 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus condimenti 70255 NZ_CP015114.1 Bac0001564 Acinetobacter variabilis str. NIPH 2171 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter variabilis 70346 APRS00000000.1 Bac0001565 Acinetobacter variabilis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter variabilis 70346 NZ_CP078027.1 Bac0001566 Acinetobacter higginsii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter higginsii 70347 APRN00000000.1 Bac0001567 Acinetobacter dispersus Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter dispersus 70348 APRO00000000.1 Bac0001568 Pyrococcus horikoshii OT3 "Pyrococcus has similar characteristics of other archaea such as Archaeoglobus, thermoautotrophican, and Methanococcus in its that they are all thermophilic and anaerobic. Pyrococcus differs, however, because it's optimal growth temperature is nearly 100oC and dwells at a greater sea depth than the other archaeons. Studying Pyrococcus helps give insight to possible mechanisms used to endure extreme environmental conditions like high temperatures and high pressure.The cells of Pyrococcus are about 0.8- 2um and are slightly irregular cocci in shape. They show a polar grouping of flagella and are enveloped by an S-layer enclosing a periplasmic space around the cytoplasmic membrane. Pyrococcus species are anaerobic but vary slightly concerning their metabolism. Peptide fermentation is the principle metabolic pathway however, growth has been observed for P. furiosus and P. abyssi on starch, maltose, and pyruvate but not for P. horikoshii. While the presence of elemental sulfur is not needed for growth, growth is enhanced with the addition of So.Pyrococcus species inhabit environments with extremely high temperatures such as undersea hot vents. Optimal growth conditions include a pH level of about 7, a salt concentration around 2.5%, and a temperature around 98oC. Growing in temperatures this high, it is easy to see why they are anaerobic since at these boiling temperatures hardly any oxygen will be available. In the example of undersea hot vents, where P. abyssi has been found, there is no sunlight and the pressure is around 200 atm in addition to the extremely high temperature. (From http://microbewiki.kenyon.edu/index.php/Pyrococcus) (MicrobeWiki: Pyrococcus)" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus horikoshii OT3 Cocci No 1 1 Anaerobe 98 Hyperthermophilic Aquatic Free living Nonsporulating No 70601 NC_000961.1 Bac0001569 Legionella taurinensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella taurinensis 70611 QFGE00000000.1 Bac0001570 Pseudomonas plecoglossicida str. DJ-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas plecoglossicida soil environments 70775 NTME00000000.1 Bac0001571 Mammaliicoccus vitulinus "Mammaliicoccus vitulinus is a gram-positive, coccoid-shaped bacterium that categorically thrives in mesophilic temperatures. As a chemoheterotroph, this microbe derives energy and carbon from organic compounds, primarily inhabiting various body sites of mammals, including the gastrointestinal tract, oral cavity, and skin. It is classified as a facultative anaerobe, meaning it can survive in both the presence and absence of oxygen, which allows it to adapt to diverse anaerobic environments within host mammals. The characteristic gram stain of M. vitulinus indicates that it possesses a thick peptidoglycan layer, typical of gram-positive bacteria, which provides structural integrity and defense against environmental stresses. Being coccoid in shape, these bacteria typically appear as spherical cells, often clustered in pairs or chains. Their mesophilic temperature preference suggests an optimal growth range of around 30 to 37°C, aligning with the internal temperatures of mammals. As a chemoheterotroph, M. vitulinus relies on the breakdown of organic substrates, such as sugars and amino acids, for energy production, contributing to its role as a gut microbe that aids in digestion. Mammaliicoccus vitulinus has garnered attention for its potential involvement in the synthesis of certain vitamins and nutrients beneficial to its mammalian hosts. Furthermore, it may play a role in maintaining gut health through its interaction with the host immune system, influencing microbial diversity and competitive exclusion of pathogenic bacteria. Its presence in diverse mammalian species highlights its adaptability and importance in the microbiome, offering insights into the complex relationships between hosts and their resident microbes." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Mammaliicoccus Mammaliicoccus vitulinus Cocci No 1 Chemoheterotroph Animal intestinal microflora Nonsporulating 71237 PZFK00000000.1 Bac0001572 Mesorhizobium amorphae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium amorphae 71433 QFNI00000000.1 Bac0001573 Brenneria alni Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria alni aerobic 71656 MJLZ00000000.1 Bac0001574 Kocuria palustris str. CD07_3 "Kocuria palustris str. CD07_3 is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. As a member of the genus Kocuria, this strain exhibits the typical morphological and physiological traits associated with Gram-positive bacteria, including a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. ↵↵The aerobic nature of K. palustris str. CD07_3 indicates its reliance on oxygen for metabolism, which may suggest a role in biogeochemical cycles where oxygen is present. This metabolic requirement could enable the strain to participate in the degradation of organic materials in oxygenated environments, potentially influencing nutrient cycling and microbial community dynamics in its habitat. ↵↵Furthermore, the presence of Kocuria species in various environments, including soil and water, points to their adaptability and ecological significance. While specific ecological interactions and the broader impact of K. palustris str. CD07_3 on its environment remain to be explored, its aerobic metabolism suggests it may play a role in maintaining the balance of microbial communities in habitats where oxygen levels fluctuate, thus contributing to ecosystem resilience." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria palustris Positive Aerobe 71999 LQBJ00000000.1 Bac0001575 Kocuria rhizophila str. RF "Kocuria rhizophila strain RF is a Gram-positive coccus that typically exists in various arrangements, including singles and tetrads. This microbe is classified as an aerobe, indicating its reliance on oxygen for metabolic processes. Its habitat is diverse, suggesting a level of ecological versatility that may allow it to thrive in multiple environments, potentially including soil, water, and plant-associated niches.↵↵The coccoid shape and aerobic nature of K. rhizophila str. RF may contribute to its survival strategies in oxygen-rich environments, which are commonly found in terrestrial ecosystems. Such adaptations could facilitate its role in nutrient cycling and interactions with other microorganisms in its habitat. The ability to exist in multiple arrangements, from solitary cells to pairs or clusters, might also enhance its resilience and adaptability to varying environmental conditions. ↵↵Overall, Kocuria rhizophila str. RF exemplifies the ecological adaptability of certain Gram-positive cocci, highlighting the potential for diverse metabolic pathways and interactions in various habitats." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rhizophila Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Singles - Tetrads 72000 JPWX00000000.2 Bac0001576 Kocuria rhizophila "Kocuria rhizophila is a Gram-positive, cocci-shaped bacterium classified as a facultative anaerobe that thrives at mesophilic temperatures, primarily inhabiting various environments such as soil, water, and plant surfaces. This microbe demonstrates versatility in its metabolic processes as a chemoheterotroph, sourcing energy from organic compounds, which allows it to adapt to diverse ecological niches. As a Gram-positive organism, Kocuria rhizophila retains a thick peptidoglycan layer that contributes to its structural integrity and resilience against environmental stresses. The cocci shape is typical of many bacteria and can influence its reproduction and colonization strategies. Being facultative anaerobes, these bacteria can grow in both the presence and absence of oxygen, utilizing aerobic respiration when oxygen is available and switching to fermentation pathways when it is not. This adaptability allows Kocuria rhizophila to colonize various body sites, including skin, respiratory tracts, and as a part of the normal flora in the human and animal microbiomes. Kocuria rhizophila has garnered attention for its role in bioremediation processes, where it demonstrates the ability to degrade pollutants, thereby contributing to environmental detoxification. Furthermore, it has been studied for its potential applications in biotechnology, particularly in the production of bioactive compounds, including antimicrobial agents. This microbe exemplifies the intricate relationship between microorganisms and their environments, showcasing its capacity to thrive in diverse habitats and its potential benefits to human health and environmental sustainability." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rhizophila Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Singles - Tetrads 72000 QFNW00000000.1 Bac0001577 Klebsiella pneumoniae subsp. pneumoniae str. RJA166 "Klebsiella pneumoniae subsp. pneumoniae str. RJA166 is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This strain is nonsporulating and demonstrates a facultative anaerobic metabolism, allowing it to thrive in both the presence and absence of oxygen. It primarily derives its energy as a chemoheterotroph, utilizing organic compounds, which aligns with its natural habitat in the host gut.↵↵Optimal growth conditions for K. pneumoniae str. RJA166 are achieved at 37.0°C, reflecting the typical body temperature of mammals, indicating its adaptation to a mammalian host environment. This temperature preference suggests a potential role in the gut microbiome of warm-blooded animals, where it may participate in various metabolic processes and contribute to the overall microbial diversity.↵↵Given its association with the intestinal tract, K. pneumoniae subsp. pneumoniae str. RJA166 may play a significant role in gut ecology, potentially influencing nutrient absorption and the host's immune responses. However, its presence in the gut must be balanced, as deviations from a healthy microbial community can lead to dysbiosis, highlighting the complex interactions between host and microbe in maintaining gut health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod No 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Free living Chains - Pairs - Singles Nonsporulating 72407 NZ_CP019049.1 Bac0001578 Klebsiella pneumoniae subsp. pneumoniae "Klebsiella pneumoniae subsp. pneumoniae is a Gram-negative, encapsulated bacterium that thrives in a wide range of temperatures, falling into the category of mesophiles with a temperature preference between 20-40°C. As a heterotroph, it derives its energy from organic compounds, obtaining a metabolic benefit from the breakdown of complex molecules. K. pneumoniae subsp. pneumoniae is a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments, but it exhibits its optimal growth rate in the presence of oxygen. Its energy production is primarily achieved through the process of aerobic respiration, utilizing the electron transport chain to generate ATP. In terms of morphology, K. pneumoniae subsp. pneumoniae is a rod-shaped bacterium, typically measuring 0.5-2.0 μm in width and 1-5 μm in length. It is a ubiquitous pathogen, found in various body sites, including the lungs, bloodstream, and urinary tract. Its ability to colonize and infect multiple areas of the human body makes it a significant cause of nosocomial infections. The bacterium's occurrence in all body sites in all possible species is a testament to its adaptability and resilience. As a facultative anaerobe, it can survive in a variety of environments, from the oxygen-rich atmosphere to the oxygen-poor tissues. Its ability to thrive in both aerobic and anaerobic conditions makes it a formidable opponent in the human body. Klebsiella pneumoniae subsp. pneumoniae is often found in association with biofilms, complex communities of microorganisms that adhere to surfaces and produce exopolysaccharides. These biofilms provide a protected environment for the bacteria, allowing them to evade host immune responses and antibiotics, making treatment more challenging. Despite its pathogenic capabilities, K. pneumoniae subsp. pneumoniae has also been found to have beneficial effects, such as its role in decomposing organic matter and recycling nutrients in the environment. Despite its importance in the human body, K. pneumoniae subsp. pneumoniae is often overlooked due to its widespread presence. However, its ability to adapt to various environments and its complex interactions with other microorganisms make it a fascinating subject for study." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod No 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Free living Chains - Pairs - Singles Nonsporulating 72407 PTGX00000000.2 Bac0001579 Staphylococcus capitis subsp. capitis "Staphylococcus capitis subsp. capitis is a Gram-positive, cocci-shaped bacterium classified within the Staphylococcus genus. This microbe demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its ability to adapt to varying oxygen levels contributes to its resilience in diverse habitats, particularly on human skin and mucosal surfaces.↵↵As a member of the Staphylococcus genus, S. capitis subsp. capitis is part of the normal microbiota of humans, where it plays a role in maintaining skin homeostasis. While it is generally recognized as a commensal organism, its presence on the skin may provide insights into microbial interactions and the dynamics of the skin microbiome. The bacterium’s cocci morphology and Gram-positive characteristic suggest that it possesses a thick peptidoglycan layer, which is essential for its structural integrity and protection against environmental stressors.↵↵Research into S. capitis subsp. capitis may reveal important information about microbial resistance mechanisms and the role of skin-associated bacteria in health and disease. The adaptability of this subspecies in both aerobic and anaerobic conditions highlights its potential significance in the context of skin microbiota stability and the broader implications for human health, particularly in understanding how commensal organisms can influence host immune responses and microbial community dynamics." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus capitis Positive Cocci Facultative anaerobe 72758 PPPY00000000.1 Bac0001580 Streptomyces seoulensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces seoulensis 73044 NZ_CP032229.1 Bac0001581 Roseovarius tolerans str. EL-164 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius tolerans 74031 LGVV00000000.1 Bac0001582 Antarctobacter heliothermus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Antarctobacter Antarctobacter heliothermus 74033 NZ_CP022542.1 Bac0001583 Maricaulis maris str. DSM 4734 Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Maricaulis Maricaulis maris 74318 RBIM00000000.1 Bac0001584 Sulfitobacter guttiformis str. DSM 11458 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter guttiformis 74349 RAQK00000000.1 Bac0001585 Prochlorococcus marinus str. MIT 9312 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus MIT 9312 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 74546 NC_007577.1 Bac0001586 Prochlorococcus marinus str. MIT 9313 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus MIT 9313 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 74547 NC_005071.1 Bac0001587 Staphylococcus cohnii subsp. cohnii str. G22B2 "Staphylococcus cohnii subsp. cohnii str. G22B2 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, utilizing a chemoheterotrophic energy source. This strain belongs to a genus characterized by its spherical shape and ability to thrive in diverse habitats, indicating a level of ecological versatility. ↵↵The facultative anaerobic nature of S. cohnii subsp. cohnii str. G22B2 enables it to grow in both aerobic and anaerobic environments, which may contribute to its adaptability in various ecological niches, including human-associated microbiomes and potentially other environments. The capability to utilize organic compounds for energy further emphasizes its role as a chemoheterotroph, allowing it to exploit a range of substrates.↵↵The presence of this strain in multiple habitats highlights its ecological significance and potential interactions with other microbial communities. Understanding the ecological roles of S. cohnii subsp. cohnii str. G22B2 may provide insights into its contributions to microbial diversity and stability in different environments, as well as its potential influence on the dynamics of microbial interactions." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus cohnii Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 74704 LAKJ00000000.1 Bac0001588 Mammaliicoccus sciuri "Mammaliicoccus sciuri is a Gram-positive, cocci-shaped bacterium that typically forms clusters. This nonsporulating microbe thrives optimally at a temperature of 37.0°C, indicating its adaptation to mammalian hosts. As a facultative anaerobe, M. sciuri can utilize both aerobic and anaerobic respiration, which reflects its versatile metabolic capabilities as a chemoheterotroph, deriving energy from organic compounds.↵↵M. sciuri inhabits the epidermis of various mammalian hosts, suggesting a specific ecological niche where it may play a role in the skin microbiome. The presence of this bacterium on the skin surface indicates potential interactions with host immune responses and other microbial communities. While the specific ecological roles of M. sciuri remain to be clarified, its adaptation to the skin environment and ability to thrive in the presence of oxygen or its absence may contribute to its survival and persistence in dynamic microbial ecosystems.↵↵In summary, Mammaliicoccus sciuri exemplifies a microbe that is well-suited to living on the skin of mammals, highlighting the intricate balance between host organisms and their resident microbial populations. Further investigation into its interactions with host factors and other skin microbiota may reveal additional insights into its ecological significance." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Mammaliicoccus Mammaliicoccus sciuri Positive Cocci No 1 Facultative Anaerobe 37 Chemoheterotroph Mesophilic Host Epidermis Clusters Nonsporulating 74707 RXWV00000000.1 Bac0001589 Ferroplasma acidiphilum str. Y Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Ferroplasma Ferroplasma acidiphilum 74969 NZ_CP015363.1 Bac0001590 Paraburkholderia caribensis str. Bcrs1W Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caribensis 75105 NZ_CP013349.1 Bac0001591 Micropruina glycogenica Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Micropruina Micropruina glycogenica 29 mesophilic 75385 NZ_LT985188.1 Bac0001592 Pseudomonas mandelii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mandelii 75612 NZ_LT629796.1 Bac0001593 Campylobacter devanensis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter devanensis 75658 NZ_CP018788.1 Bac0001594 Mycolicibacterium tusciae Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium tusciae 75922 MVIM00000000.1 Bac0001595 Amycolatopsis sulphurea str. DSM 46092 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sulphurea 29 mesophilic 76022 PDJK00000000.1 Bac0001596 Cellulophaga baltica Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga baltica 76594 FNBD00000000.1 Bac0001597 Mycoplasmopsis gallopavonis Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis gallopavonis 76629 NZ_LR215031.1 Bac0001598 Mycetocola lacteus str. JCM 11654 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola lacteus 29 mesophilic 76637 RCUY00000000.1 Bac0001599 Pseudomonas orientalis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas orientalis 76758 NZ_CP018049.1 Bac0001600 Pseudomonas alabamensis "Pseudomonas alabamensis is a Gram-negative, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This species is primarily found in soil environments, where it plays a role in the decomposition of organic matter, contributing to nutrient cycling within terrestrial ecosystems. As an obligate aerobe, Pseudomonas alabamensis requires oxygen for its metabolic processes, which further highlights its adaptation to aerobic habitats.↵↵The rod shape of Pseudomonas alabamensis is characteristic of many members of the Pseudomonas genus, facilitating motility and colonization in its soil habitat. The bacterium's ability to thrive in diverse soil conditions underscores its potential ecological versatility. While specific interactions with other soil microorganisms and plants have not been detailed, the presence of Pseudomonas alabamensis in soil suggests it may engage in complex ecological interactions that could influence soil health and fertility.↵↵In summary, Pseudomonas alabamensis exemplifies the diverse metabolic capabilities of soil-dwelling bacteria, contributing to ecological processes such as organic matter breakdown and nutrient availability, which are vital for sustaining soil ecosystems and promoting plant growth." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas alabamensis Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 76759 NZ_CP013997.1 Bac0001601 Pseudomonas monteilii str. CY06 "Pseudomonas monteilii strain CY06 is a Gram-negative, rod-shaped bacterium that exhibits nonsporulating characteristics and functions as a chemoheterotroph. This microbe is primarily found in soil environments, where it plays a role in nutrient cycling and organic matter decomposition. As an aerobe, Pseudomonas monteilii strain CY06 requires oxygen for its metabolic processes, positioning it within ecosystems where aerobic conditions prevail.↵↵The chemoheterotrophic metabolism of Pseudomonas monteilii strain CY06 suggests its ability to utilize organic compounds as both a carbon and energy source, which is essential for its growth and survival in soil habitats. The bacterium's adaptation to aerobic conditions indicates its potential involvement in the degradation of various organic substrates in oxygen-rich environments. ↵↵Understanding the ecological role of Pseudomonas monteilii strain CY06 enhances our appreciation of soil microbial diversity and its contributions to soil health. This strain may play a critical role in maintaining soil fertility and supporting plant growth by participating in the decomposition of organic matter and nutrient cycling processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monteilii Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 76759 PJCG00000000.1 Bac0001602 Pseudomonas monteilii "Pseudomonas monteilii is a Gram-negative, rod-shaped bacterium that thrives in moderate temperatures and functions as a chemoheterotroph. This organism is part of the Pseudomonas genus, known for its metabolic versatility, and can be found in various environments, including soil, water, and even as part of the normal flora in different body sites of diverse species. As a facultative anaerobe, P. monteilii can survive in both aerobic and anaerobic conditions, making it remarkably adaptable to fluctuating environmental oxygen levels. The Gram-negative classification of Pseudomonas monteilii indicates its cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural composition not only provides protection against harsh environmental conditions but also contributes to its pathogenic potential in susceptible hosts. The rod shape of the bacterium enhances its motility through flagella, allowing it to colonize a variety of niches effectively. As a chemoheterotroph, P. monteilii derives its energy and carbon from organic compounds, enabling it to thrive in rich environments such as decaying organic matter. This metabolic flexibility allows it to adapt to nutrient-poor conditions, thus contributing to its ecological resilience. Pseudomonas monteilii has been studied for its ability to produce various secondary metabolites, including antimicrobial compounds and bioactive molecules, particularly relevant in biotechnology and medicine. Its potential application in bioremediation efforts highlights its role in breaking down environmental pollutants, showcasing its importance beyond mere pathogenicity. Additionally, the organism's capacity to survive in diverse habitats also illustrates the remarkable adaptability and ecological significance of the Pseudomonas genus in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monteilii Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 76759 NZ_CP022562.1 Bac0001603 Pseudomonas rhodesiae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas rhodesiae aerobic 76760 NZ_LT629801.1 Bac0001604 Pseudomonas veronii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas veronii 76761 JYLL00000000.1 Bac0001605 Xanthomonas citri pv. aurantifolii Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 76802 NZ_CP011251.1 Bac0001606 Myroides odoratimimus str. PR63039 "Myroides odoratimimus strain PR63039 is a Gram-negative, rod-shaped bacterium that exhibits aerotolerant characteristics and thrives optimally at 37.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, making it versatile in utilizing various substrates for growth. ↵↵The habitat of Myroides odoratimimus str. PR63039 is described as multiple, suggesting its presence in diverse environments, potentially including soil, water, or associated with various organic materials. This adaptability may allow the strain to occupy niches where it can efficiently exploit available resources. ↵↵Understanding the ecological role of Myroides odoratimimus str. PR63039 may provide insights into its interactions within microbial communities, particularly regarding its survival strategies in fluctuating environmental conditions. Its aerotolerant nature indicates that it can survive in both aerobic and anaerobic conditions, which may contribute to its resilience in diverse habitats and its potential involvement in biogeochemical cycles. Further investigation into its metabolic pathways could reveal additional functional capabilities that underscore its ecological significance." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus Negative Rod No 1 Aerotolerant 37 Chemoheterotroph Mesophilic Multiple 76832 NZ_CP013691.1 Bac0001607 Solibacillus silvestris "Solibacillus silvestris is a rod-shaped bacterium that exhibits characteristics typical of the genus Solibacillus. This organism is noteworthy for its resilience and adaptability in various environments. As a member of the broader bacterial community, S. silvestris may play a role in nutrient cycling and soil health, although specific ecological interactions have yet to be fully characterized. Its rod shape suggests a potential for efficient movement and colonization in diverse substrates, which could contribute to its ecological versatility.↵↵The classification of Solibacillus silvestris within the microbial domain emphasizes its significance in understanding microbial diversity and functions in natural ecosystems. While the precise habitats and interactions of S. silvestris remain to be explored, its presence in specific environments may indicate its role in biogeochemical processes, potentially influencing soil structure and fertility.↵↵Further research into the physiology and ecological roles of Solibacillus silvestris could reveal insights into its contributions to microbial communities and its potential applications in biotechnology or environmental management. Understanding the traits and behavior of this bacterium will enhance our comprehension of microbial dynamics and biodiversity in terrestrial ecosystems." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Solibacillus Solibacillus silvestris Rod 76853 LZRJ00000000.1 Bac0001608 Fusobacterium nucleatum subsp. nucleatum str. ChDC F311 "Fusobacterium nucleatum subsp. nucleatum str. ChDC F311 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0°C. This strain is associated with host environments, indicating a close relationship with living organisms, which may suggest its role in host-associated microbiomes.↵↵As a member of the genus Fusobacterium, this subspecies is part of a larger group of bacteria known for their diverse roles in various biological contexts, including human health and disease. The anaerobic nature of F. nucleatum subsp. nucleatum str. ChDC F311 highlights its adaptation to environments where oxygen is limited, making it well-suited for colonization of specific niches within host organisms.↵↵Further examination of the ecological roles of F. nucleatum subsp. nucleatum str. ChDC F311 may provide insights into its interactions within microbial communities, particularly in relation to health and disease states. The presence of such bacteria in host-associated environments could influence microbial diversity and stability, and may play a role in the metabolic processes occurring within these ecosystems. Understanding the specific functions and interactions of this strain can contribute to a broader comprehension of host-microbe dynamics and the implications for host health." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 76856 LMVH00000000.1 Bac0001609 Fusobacterium polymorphum str. KCOM 1001 "Fusobacterium polymorphum strain KCOM 1001 is a Gram-negative, nonsporulating bacterium characterized by its rod shape and arrangement in pairs. As a chemoheterotroph, this microbe derives its energy from organic compounds, thriving in anaerobic conditions, which aligns with its ecological niche within the host gut environment. Optimal growth of F. polymorphum KCOM 1001 occurs at a temperature of 37.0 °C, reflecting the typical physiological conditions found in the intestines of various host organisms.↵↵The presence of this strain in the gut microbiota suggests a potential role in the complex interactions within the microbial community, possibly contributing to nutrient degradation and absorption. The anaerobic lifestyle of F. polymorphum KCOM 1001 indicates its adaptation to environments with limited oxygen availability, which is typical of the gut ecosystem. This specialization allows it to coexist with other gut bacteria and may influence host metabolism and immune responses. Further studies on this strain could provide insights into the functional contributions of Fusobacterium species to gut health and their potential interactions with other microbial inhabitants in the gastrointestinal tract." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NHRT00000000.1 Bac0001610 Fusobacterium polymorphum str. KCOM 1002 (=ChDC F175) "Fusobacterium polymorphum str. KCOM 1002, also classified as ChDC F175, is a Gram-negative, nonsporulating bacterium characterized by its rod shape and typical arrangement in pairs. This microbe thrives under anaerobic conditions, indicative of its adaptation to environments devoid of oxygen, such as the gastrointestinal tract of hosts. As a chemoheterotroph, F. polymorphum str. KCOM 1002 derives its energy from organic compounds, which supports its role in the nutrient-rich gut habitat.↵↵The optimal growth temperature for this strain is 37.0°C, aligning with the physiological temperature of many mammalian hosts. This temperature preference suggests a potential symbiotic relationship with host organisms, where F. polymorphum str. KCOM 1002 may contribute to gut metabolism and maintain microbial community dynamics.↵↵The presence of this bacterium in the host gut may reflect its involvement in complex microbial interactions and metabolic pathways, underscoring its importance in gut health and function. Further exploration of its role could provide insights into its contributions to gut microbiota stability and overall host well-being, as well as its potential influence on nutrient absorption and fermentation processes within the gastrointestinal ecosystem." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NIRJ00000000.1 Bac0001611 Fusobacterium polymorphum str. KCOM 1271 (=ChDC F305) "Fusobacterium polymorphum str. KCOM 1271 (=ChDC F305) is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs and is classified as a nonsporulating organism. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to a host-associated environment, and it primarily utilizes a chemoheterotrophic metabolism for energy. As an anaerobe, F. polymorphum str. KCOM 1271 resides in the gut of its host, where oxygen levels are low, allowing it to flourish in this specialized habitat.↵↵The bacterium's nonsporulating nature suggests that it relies on other survival strategies in the absence of adverse environmental conditions. Its presence in the gut highlights its potential role in the complex microbial ecosystem, where it may interact with other gut microbiota and contribute to various metabolic processes. Moreover, the pairing of cells may facilitate specific interactions or functions within the gut, possibly influencing community dynamics or nutrient cycling.↵↵Understanding the traits of F. polymorphum str. KCOM 1271 provides insight into its potential ecological roles in the gut microbiome, including its contributions to digestion and metabolic exchanges within a host-associated anaerobic environment." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NIRN00000000.1 Bac0001612 Fusobacterium polymorphum str. KCOM 1275 (=ChDC F310) "Fusobacterium polymorphum str. KCOM 1275 (=ChDC F310) is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs and is characterized as nonsporulating. As a chemoheterotroph, it derives its energy from organic compounds, which is consistent with its ecological niche within the gut of hosts. This strain thrives under anaerobic conditions, making it well-adapted to the oxygen-limited environment of the intestinal tract. Optimal growth occurs at 37.0°C, aligning with the physiological temperature of many warm-blooded animals.↵↵The presence of F. polymorphum in the host gut suggests that it may play a role in the complex microbial community associated with digestion and nutrient absorption. While the specific interactions and functions of this strain within the gut microbiome remain to be elucidated, its adaptation to anaerobic conditions and its position as a chemoheterotroph indicate that it may contribute to the fermentation processes that are essential for breaking down complex carbohydrates. Such metabolic activities can have implications for host health, including the production of short-chain fatty acids, which are important for maintaining gut integrity and overall metabolic functions. Further research is warranted to explore the specific roles and contributions of F. polymorphum in microbial ecosystems and host interactions." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NZ_CP022123.1 Bac0001613 Fusobacterium polymorphum "Fusobacterium polymorphum is a Gram-negative, rod-shaped bacterium that typically occurs in pairs and is characterized as a nonsporulating, anaerobic organism. It thrives optimally at a temperature of 37.0°C, which aligns with the conditions found within the host gut, its natural habitat. As a chemoheterotroph, F. polymorphum derives its energy from organic compounds, playing a potential role in the complex microbial ecosystem of the gastrointestinal tract.↵↵This bacterium's anaerobic nature suggests a specialized adaptation to the oxygen-limited environments of the gut, where it may contribute to various metabolic processes and interactions with other microbial species. The presence of F. polymorphum in the gut highlights the intricate relationships between gut microbiota and their host, as these bacteria can influence digestion, nutrient absorption, and overall gut health. Understanding the role of F. polymorphum in the gut ecosystem may provide insights into its contributions to host-microbe interactions and the maintenance of gut homeostasis." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NZ_CP013330.1 Bac0001614 Fusobacterium animalis "Fusobacterium animalis is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0 °C. This microbe is typically associated with host organisms, suggesting a symbiotic or commensal relationship, although its specific ecological roles within various hosts are not fully elucidated. ↵↵As an anaerobe, Fusobacterium animalis is adapted to environments devoid of oxygen, which may include the gastrointestinal tracts of animals, where it likely plays a role in the complex microbiota. The presence of this bacterium in host-associated habitats indicates its potential involvement in various metabolic processes, possibly contributing to the fermentation of nutrients or influencing the overall health of the host microbiome. ↵↵Understanding the specific interactions and functions of Fusobacterium animalis within its host could provide valuable insights into microbial ecology and the maintenance of microbial diversity. Additionally, its adaptation to anaerobic conditions underscores the importance of oxygen-free niches in supporting a diverse array of microbial life, highlighting the intricate balance within host-associated microbial communities." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 76859 NPND00000000.1 Bac0001615 Streptococcus constellatus str. KCOM 1650 "Streptococcus constellatus str. KCOM 1650 is a Gram-positive, coccoid bacterium that exhibits facultative anaerobic metabolism. This strain belongs to the genus Streptococcus, which is characterized by its spherical shape and ability to thrive in both aerobic and anaerobic environments. The facultative anaerobic nature of S. constellatus str. KCOM 1650 suggests that it can adapt its metabolic processes depending on the availability of oxygen, allowing it to colonize a variety of ecological niches.↵↵S. constellatus is part of the normal human microbiota, commonly found in the oral cavity and gastrointestinal tract. While specific ecological interactions of this strain are not detailed in the provided traits, the presence of facultative anaerobes in these environments is crucial for maintaining microbial balance. They can contribute to nutrient cycling and serve as a source of metabolic diversity, which can be particularly important in complex communities like those found in the human microbiome.↵↵Understanding the physiological capabilities of S. constellatus str. KCOM 1650, particularly its oxygen adaptability, may provide insights into its role in health and disease. The ability to switch between aerobic and anaerobic metabolism could enable this microbe to survive in fluctuating environments, potentially influencing its interactions with other microbial species and its overall ecological impact." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus constellatus Positive Cocci Facultative anaerobe Animal 76860 JWIY00000000.1 Bac0001616 Streptococcus constellatus str. KCOM 1039 "Streptococcus constellatus str. KCOM 1039 is a Gram-positive coccus that exhibits facultative anaerobic metabolism. This strain belongs to the genus Streptococcus, which is characterized by its spherical shape and tendency to form chains or pairs. As a facultative anaerobe, S. constellatus str. KCOM 1039 can grow in both aerobic and anaerobic conditions, suggesting a versatile metabolic capacity that allows it to adapt to varying environmental oxygen levels.↵↵S. constellatus is recognized for its role in the human microbiome, particularly within the oral cavity and gastrointestinal tract. The ability of this strain to thrive under different oxygen conditions may contribute to its ecological niche, enabling it to persist in diverse habitats where oxygen availability fluctuates. This adaptability could also play a role in its interactions with other microbial community members, potentially influencing the overall balance of the microbiota.↵↵Given its characteristics, S. constellatus str. KCOM 1039 offers insights into the microbial dynamics of the human body, where its presence may be indicative of specific physiological conditions or responses to environmental changes. The strain's facultative anaerobic nature highlights the importance of microbial flexibility in sustaining communities within the complex ecosystems of the host organism. Further research into this strain could elucidate its functions and interactions within the broader context of microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus constellatus Positive Cocci Facultative anaerobe Animal 76860 QWKV00000000.1 Bac0001617 Streptococcus constellatus "Streptococcus constellatus is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, which means it relies on chemical reactions and external sources for energy and carbon, producing energy through fermentation. This microbe can be found in various body sites across different species, including the human oral cavity, respiratory tract, and gastrointestinal tract, as well as in animals. As a facultative anaerobe, Streptococcus constellatus can survive in both aerobic and anaerobic environments, adapting its metabolism to suit the available oxygen levels.The Gram-positive characteristic of Streptococcus constellatus is due to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining procedure. Its spherical shape is typical of many streptococcal species, allowing for efficient cellular division and growth. As a chemoheterotroph, Streptococcus constellatus requires external sources of carbon and energy, which it obtains by breaking down complex organic molecules.The ability of Streptococcus constellatus to produce energy through fermentation is crucial for its survival in environments with limited oxygen availability. This metabolic flexibility also enables the microbe to inhabit a wide range of ecological niches, from the human mouth to the gastrointestinal tract of animals. Its facultative anaerobic nature allows it to thrive in both aerobic and anaerobic environments, making it a highly adaptable microbe. ↵Streptococcus constellatus has been implicated in various human infections, including abscesses and bacteremia, particularly in individuals with compromised immune systems, and research has shown that this microbe can form biofilms, which are complex communities of microorganisms that adhere to surfaces and are resistant to antimicrobial agents." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus constellatus Positive Cocci Facultative anaerobe Animal 76860 LQXU00000000.1 Bac0001618 Candidatus Epulonipiscioides saccharophilum Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Candidatus Epulonipiscioides Candidatus Epulonipiscioides saccharophilum 77094 LNZM00000000.1 Bac0001619 Candidatus Epulonipiscium fishelsonii Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Candidatus Epulonipiscium Candidatus Epulonipiscium fishelsonii 77094 LJDB00000000.1 Bac0001620 Pseudomonas jessenii str. E2333 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas jessenii 77298 QRAV00000000.1 Bac0001621 Pseudomonas jessenii str. EC-S101 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas jessenii 77298 VDDB00000000.1 Bac0001622 Pseudomonas jessenii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas jessenii 77298 FNTC00000000.1 Bac0001623 Pseudoalteromonas distincta str. ANT/505 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas distincta 77608 ADOP00000000.1 Bac0001624 Pseudoalteromonas distincta Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas distincta 77608 NZ_CP040558.1 Bac0001625 Fusobacterium naviforme str. ATCC 25832 "Fusobacterium naviforme strain ATCC 25832 is a nonsporulating, Gram-negative bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, a characteristic that aligns with its habitat within the intestinal microflora of animals.↵↵As a member of the Fusobacteria phylum, F. naviforme plays a role in the complex microbial community of the gut, contributing to the overall metabolic processes that occur within this environment. The anaerobic nature of its existence suggests that it may engage in various fermentation processes, potentially influencing nutrient absorption and gut health in its hosts. ↵↵While the specific interactions of F. naviforme with the host and other microbial inhabitants are not fully elucidated, its presence in the intestinal microflora hints at a possible role in maintaining gut homeostasis and digestive efficiency. Understanding the functional contributions of this species could shed light on the intricate dynamics of gut microbiota and their significance in the health of the host organism." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium naviforme Negative No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 77917 PYGH00000000.1 Bac0001626 Paracidovorax anthurii Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax anthurii 78229 QLTA00000000.1 Bac0001627 Pseudomonas mosselii str. WS2-TSB-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mosselii 78327 MRVJ00000000.1 Bac0001628 Pseudomonas mosselii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mosselii 78327 NZ_CP023299.1 Bac0001629 Bifidobacterium boum str. LMG 10736 "Bifidobacterium boum str. LMG 10736 is a Gram-positive bacterium characterized as a facultative anaerobe, capable of thriving in environments both with and without oxygen, particularly in the presence of air and carbon dioxide. This strain is part of the Bifidobacterium genus, which is known for its role in the gut microbiota of various mammals, including ruminants. The facultative anaerobic nature of B. boum str. LMG 10736 suggests that it can adapt to fluctuating oxygen levels, which may be a significant advantage in the dynamic intestinal environment.↵↵The ability to utilize both aerobic and anaerobic metabolic pathways allows this microbe to efficiently exploit available nutrients, contributing to its survival and functionality within complex microbial communities. Moreover, the presence of this strain in the gastrointestinal tract may provide insights into the metabolic interactions occurring within the gut, particularly in relation to digestion and fermentation processes.↵↵Understanding the specific traits of Bifidobacterium boum str. LMG 10736 can shed light on its potential roles in the intestinal ecosystem, including its contributions to nutrient absorption and modulation of gut health. Furthermore, as a representative of bifidobacterial species, it may play a critical role in maintaining microbial balance, which is essential for the overall well-being of its host." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium boum Positive "Facultative anaerobe, air+co2" 78343 JGYQ00000000.1 Bac0001630 Bifidobacterium pullorum subsp. gallinarum str. CACC514 "Bifidobacterium pullorum subsp. gallinarum str. CACC514 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolic capabilities. This strain is part of the diverse intestinal microflora found in animals, indicating its role in the gut ecosystem. As a member of the Bifidobacterium genus, it contributes to the fermentation of carbohydrates and is likely involved in the production of short-chain fatty acids, which are beneficial for gut health.↵↵B. pullorum subsp. gallinarum str. CACC514 thrives in the complex environment of the intestinal tract, where it may participate in various interactions with other microbial species and host tissues. The specific adaptations that allow this strain to flourish in such a habitat may include the ability to utilize a range of organic substrates derived from the host's diet. ↵↵Despite its nonsporulating nature, the resilience of Bifidobacterium species in fluctuating gut conditions suggests a capacity for survival and functional importance within the microbiome. The presence of this strain in animal intestines underscores its potential significance in maintaining gut homeostasis and suggests avenues for exploring its application in probiotic developments or as a model for studying gut microbial interactions. Further research could elucidate its specific roles and contributions to the health of its host organism." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pullorum Positive Rod No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 78344 NZ_CP035464.1 Bac0001631 Pectobacterium odoriferum Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium odoriferum 78398 JQOF00000000.1 Bac0001632 Asticcacaulis excentricus str. M6 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis excentricus 78587 NZ_AP018827.1 Bac0001633 Sutcliffiella horikoshii Bacillati Bacillota Bacilli Caryophanales Bacillaceae Sutcliffiella Sutcliffiella horikoshii 79883 NZ_CP020881.1 Bac0001634 Alkalihalobacillus pseudalcaliphilus str. DSM 8725 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalihalobacillus Alkalihalobacillus pseudalcaliphilus 79884 LFJO00000000.1 Bac0001635 Methanothermobacter marburgensis str. Marburg "Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) is a thermophilic methanogenic archaeon isolated in 1978 from anaerobic sewage sludge in Marburg, Germany. It possesses approximately 200 CDS required for the synthesis of the enzymes, coenzymes and prosthetic groups involved in CO2 reduction to methane and in coupling of this process with energy conservation. (Adapted from PMID: 20802048). (HAMAP: METTM)" Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter marburgensis "DSM 2133, Marburg" No 1 1 Obligate anaerobe Autotroph - Lithoautotroph - Lithotroph Thermophilic Sludge Free living Nonsporulating No 79929 NC_014408.1 Bac0001636 Moritella viscosa Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Moritellaceae Moritella Moritella viscosa 80854 FPLD00000000.1 Bac0001637 Delftia acidovorans str. RAY209 "Delftia acidovorans strain RAY209 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 30.0°C and requires oxygen for its metabolic processes, categorizing it as an aerobic organism. This strain is noted for its ability to inhabit multiple environments, demonstrating versatility in its ecological niches. ↵↵As a member of the genus Delftia, strain RAY209 possesses metabolic capabilities that may allow it to exploit a variety of organic substrates, potentially contributing to its survival in diverse habitats. The organism's aerobic nature suggests a reliance on oxygen for energy production, which may influence its distribution in environments where oxygen availability fluctuates. ↵↵Interestingly, the adaptability of Delftia acidovorans strain RAY209 to different habitats may reflect its ecological role in biogeochemical cycles, particularly in the degradation of organic pollutants. This characteristic could make it a candidate for bioremediation applications, where the bacterium may help in the breakdown of contaminants in various ecological settings. Further studies could elucidate its specific functional roles and interactions within microbial communities, enhancing our understanding of its ecological significance." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Multiple Free living 80866 NZ_CP022656.1 Bac0001638 Delftia acidovorans "Delftia acidovorans is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, is classified as a chemoheterotroph, and is an obligate aerobe. This organism is commonly found in various body sites and environmental niches, including soil, water, and plant rhizospheres, playing a crucial role in nutrient cycling and ecological interactions. As a gram-negative bacterium, Delftia acidovorans possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this classification. This structural feature not only influences its staining properties but also plays a role in its pathogenicity and resistance profiles. The rod-shaped morphology contributes to its motility, allowing the bacterium to thrive in different environments. Being mesophilic, Delftia acidovorans optimally grows at moderate temperatures, typically between 20°C and 30°C, making it well-adapted to temperate climates. This temperature preference correlates with its ubiquitous presence in natural habitats, where it participates in the decomposition of organic matter and nutrient cycling. As a chemoheterotroph, Delftia acidovorans derives energy from organic compounds, which it metabolizes for growth and reproduction. This metabolic flexibility allows it to utilize a wide range of substrates. Moreover, being an obligate aerobe, it requires oxygen for its respiratory processes, thus often residing in oxygen-rich environments. Beyond these characteristics, Delftia acidovorans has garnered attention in environmental biotechnology, particularly in bioremediation. Its capability to degrade various pollutants, such as aromatic compounds, showcases its potential in cleaning contaminated sites. Additionally, its presence in diverse ecosystems highlights its role in maintaining ecological balance, showcasing its importance beyond mere survival." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Multiple Free living 80866 QFOC00000000.1 Bac0001639 Delftia acidovorans str. 2167 "Delftia acidovorans str. 2167 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at 30°C. This microbe is part of a diverse group of bacteria capable of thriving in multiple habitats, indicating its adaptability to various environmental conditions. The aerobic nature of D. acidovorans str. 2167 suggests a reliance on oxygen for its metabolic processes, which may enable it to occupy niches rich in organic material where oxygen is available.↵↵The organism's rod shape and Gram-negative cell wall structure are common features among many environmental bacteria, facilitating their survival and interaction in complex microbial communities. The optimal temperature of 30°C aligns with the conditions found in many terrestrial and aquatic environments, further supporting its presence across diverse habitats.↵↵An intriguing aspect of Delftia acidovorans str. 2167 is its potential role in biogeochemical cycles, particularly in the degradation of organic pollutants, which is a trait often associated with members of the Delftia genus. This suggests that it may contribute to the natural attenuation processes in contaminated sites, reinforcing the importance of microbial diversity in ecosystem health and sustainability." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Multiple Free living 80866 JOUB00000000.1 Bac0001640 Paracidovorax avenae "Paracidovorax avenae is a Gram-negative bacterium characterized by its unique metabolic capabilities and ecological adaptability. This microbe exhibits a rod-shaped morphology and is notable for its potential role in various environmental contexts, particularly in relation to plant systems. ↵↵As a member of the diverse microbial community, P. avenae has been studied for its interactions with plant hosts, although specific details regarding its ecological niche or symbiotic relationships remain to be elucidated. The Gram-negative cell wall structure of P. avenae, featuring an outer membrane, is integral to its physiological functions and may influence its interactions with other microorganisms in its habitat. ↵↵This bacterium's metabolic versatility suggests it may play a role in nutrient cycling, although the precise biochemical pathways and substrates utilized by P. avenae are yet to be fully characterized. The presence of this species in various environments indicates its potential resilience and adaptability to fluctuating conditions.↵↵Further research into Paracidovorax avenae could provide insights into its specific environmental roles, particularly in agricultural systems where understanding microbial interactions is crucial for promoting plant health and productivity. Its Gram-negative status may also offer opportunities for exploring novel mechanisms of microbial resilience and adaptation in complex ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax avenae Negative Mesophilic 80867 NZ_CP028294.1 Bac0001641 Paracidovorax cattleyae Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax cattleyae 80868 FNJL00000000.1 Bac0001642 Acidovorax temperans str. KY4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax temperans aerobic 80878 JXYQ00000000.1 Bac0001643 Hyphomonas adhaerens Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas adhaerens 81029 DMAN00000000.1 Bac0001644 Pseudomonas syringae pv. apii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 81036 RBPL00000000.1 Bac0001645 Photobacterium indicum Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium indicum aerobic 81447 PYOC00000000.1 Bac0001646 Entomoplasma melaleucae str. M1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma melaleucae 81459 NZ_CP024964.1 Bac0001647 Ruegeria atlantica Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria atlantica 81569 CYPS00000000.1 Bac0001648 Prevotella aff. ruminicola Tc2-24 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella aff. ruminicola Tc2-24 81582 FOIQ00000000.1 Bac0001649 Vagococcus lutrae "Vagococcus lutrae is a Gram-positive bacterium characterized by its distinctive cellular morphology and physiology. As part of the Vagococcus genus, this organism exhibits features typical of lactic acid bacteria, which are known for their role in various fermentation processes. The Gram-positive nature of Vagococcus lutrae suggests that it possesses a thick peptidoglycan layer in its cell wall, a characteristic that is often associated with the ability to withstand environmental stresses.↵↵While specific metabolic capabilities and ecological roles of Vagococcus lutrae remain to be thoroughly investigated, its classification within the Gram-positive group indicates potential involvement in nutrient cycling and symbiotic relationships within its habitat. Gram-positive bacteria, including those from similar genera, have been documented in diverse environments, including soil, water, and the gastrointestinal tracts of animals, where they can contribute to the degradation of organic materials.↵↵Further research may elucidate the specific ecological niches that Vagococcus lutrae occupies, as well as its interactions with other microorganisms. Understanding the biological roles of Vagococcus lutrae within its ecosystem could provide insights into its potential applications in biotechnology and environmental microbiology, particularly in areas related to fermentation and bioremediation processes. The presence of such bacteria in various habitats underscores their significance in maintaining microbial diversity and ecosystem functionality." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus lutrae positive 81947 NGJW00000000.1 Bac0001650 Streptococcus pluranimalium str. TH11417 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pluranimalium microaerophile 82348 NZ_CP025536.1 Bac0001651 Paracoccus pantotrophus str. NJUST38 "Paracoccus pantotrophus str. NJUST38 is a spherical-shaped (cocci) bacterium belonging to the genus Paracoccus, known for its metabolic versatility. This strain is characterized by its ability to thrive in diverse environmental conditions, reflecting the adaptability of the Paracoccus genus to various ecological niches. ↵↵As a member of the alpha-proteobacteria class, Paracoccus pantotrophus str. NJUST38 is notable for its capacity to utilize a variety of substrates, which may include organic compounds and certain inorganic nutrients. The metabolic pathways of this strain may enable it to play a role in biogeochemical cycles, particularly in nitrogen and carbon cycling, although the specifics of its metabolic capabilities require further exploration.↵↵The cocci shape of Paracoccus pantotrophus str. NJUST38 not only contributes to its classification but may also influence its interactions within microbial communities. Coccal bacteria are often involved in symbiotic relationships or can be opportunistic in exploiting available resources, which suggests that this strain could be significant in various ecological contexts, including soil ecosystems or aquatic environments.↵↵Overall, the presence of Paracoccus pantotrophus str. NJUST38 in diverse habitats highlights the potential ecological roles of cocci-shaped bacteria in nutrient cycling and ecosystem dynamics, making it a subject of interest for further microbiological studies." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus pantotrophus Cocci 82367 RIAQ00000000.1 Bac0001652 Anaerovibrio lipolyticus str. 5S "Anaerovibrio lipolyticus str. 5S is a curved-shaped, nonsporulating bacterium that exists as single cells and is classified as a chemoheterotroph. This microbe is typically found within the intestinal microflora of animals, thriving in anaerobic environments where oxygen is absent. Its metabolic capabilities allow it to utilize organic compounds from the host's diet, contributing to the complex microbial community of the gut.↵↵As a member of the animal intestinal microflora, A. lipolyticus str. 5S plays a potential role in the digestion and processing of dietary fats, which may have implications for host health and nutrient absorption. The ability of this strain to adapt to anaerobic conditions suggests it could be significant in maintaining the balance of gut microbiota, particularly in environments where oxygen levels are low. Understanding the functional roles of such anaerobic microbes can provide insights into their contributions to the overall metabolic processes within the host's intestine, as well as their interactions with other microbial species in the gut ecosystem." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Anaerovibrio Anaerovibrio lipolyticus Curvedshaped No 1 Anaerobic Chemoheterotroph Mesophilic Animal Intestinal Microflora Singles Nonsporulating 82374 JSCE00000000.1 Bac0001653 Microbacterium oxydans Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oxydans 82380 JYIW00000000.1 Bac0001654 Microbacterium oxydans str. NS234 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oxydans 82380 LDRQ00000000.1 Bac0001655 Cupriavidus pauculus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus pauculus 82633 NZ_CP033969.1 Bac0001656 Thalassoporum mexicanum PCC 7367 Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Thalassoporaceae Thalassoporum Thalassoporum mexicanum 82654 NC_019690.1 Bac0001657 Desemzia incerta Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Desemzia Desemzia incerta aerobic 82801 FOXW00000000.1 Bac0001658 Buttiauxella agrestis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella agrestis 82977 UIGI00000000.1 Bac0001659 Obesumbacterium proteus Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Obesumbacterium Obesumbacterium proteus aerobic 82983 SITL00000000.1 Bac0001660 Tatumella ptyseos "Tatumella ptyseos is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, is classified as a chemoheterotroph, and is categorized as a facultative anaerobe. This microbe is primarily associated with the human gastrointestinal tract but can also be found in various body sites across different species.As a gram-negative organism, Tatumella ptyseos possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, contributing to its ability to elude certain types of antibiotics and resist phagocytosis by immune cells. Its rod-like shape facilitates motility, aiding its colonization and persistence within host environments. The mesophilic temperature preference indicates that it thrives in moderate temperature ranges, typically between 20°C and 45°C, making it well-suited for colonization in warm-blooded hosts. Being a chemoheterotroph, Tatumella ptyseos derives its energy and carbon from organic compounds, which are often sourced from the host's nutrients, further emphasizing its role as a commensal organism in the gastrointestinal microbiota. Its classification as a facultative anaerobe allows it to survive in both aerobic and anaerobic conditions, adapting its metabolic pathways based on the availability of oxygen. Emerging research has revealed the potential of Tatumella ptyseos in clinical contexts, particularly regarding its role in human health and disease. It has been implicated in cases of opportunistic infections, highlighting the delicate balance of microbial life within the gut and its impact on overall health. Furthermore, this microbe’s ability to produce unique metabolic by-products has piqued interest for its possible applications in biotechnology and fermentation processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Tatumella ptyseos Negative Facultative anaerobe 82987 NZ_LS483499.1 Bac0001661 Buttiauxella izardii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella izardii aerobic 82991 QZWH00000000.1 Bac0001662 Mycobacteroides immunogenum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides immunogenum 83262 LJFS00000000.1 Bac0001663 Aminobacter aminovorans Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aminobacter Aminobacter aminovorans 83263 UFSM00000000.1 Bac0001664 Aminobacter aminovorans str. KCTC 2477 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aminobacter Aminobacter aminovorans 83263 NZ_CP015009.1 Bac0001665 Mycobacterium tuberculosis CDC1551 "Both leprosy and tuberculosis, caused by Mycobacterium leprae and Mycobacterium tuberculosis respectively, have seriously plagued mankind for centuries. With the emergence of antibiotic resistant strains of tuberculosis, research into mycobacteria has become all the more important in combating these modern mutants of ancient pathogens.Both the genomes of Mycobacterium tuberculosis and Mycobacterium leprae have been sequenced with hopes of gaining further understanding of how to defeat the infamously successful pathogens. The genome of M. tuberculosis is 4,411,522 base pairs long with 3,924 predicted protein-coding sequences, and a relatively high G+C content of 65.6%. At 4.4 Mbp, M. tuberculosis is one of the largest known bacterial genomes, coming in just short of E. coli, and a distant third to Streptomyces coelicolor.The genome of Mycobacterium leprae is 3,268,203 base pairs long, with only 1,604 predicted protein-coding regions, and a G+C content of about 57.8%. Only 49.5% of the M. leprae genome contains open reading frames (protein-coding regions), the rest of the genome is comprised of pseudogenes, which are inactive reading frames with recognizable and functional counterparts in M. tuberculosis (27%), and regions that do not appear to be coding at all, and may be gene remnants mutated beyond recognition (23.5%). Of the genome of M. tuberculosis, 90.8% of the genome contains protein-coding sequences with only 6 pseudogenes, compared to the 1,116 pseudogenes on the M. leprae genome.Operating on the assumption that M. leprae was once approximately the size of other mycobacteria, it has significantly downsized and degraded to its current state. If all the genes on the M. leprae genome were active, it would have about 3,000 open reading frames, compared to the 4,000 proteins of M. tuberculosis. Total, over its evolutionary history, M. leprae has lost more than 2,000 genes.Mycobacteria are rod-shaped, Gram-positive aerobes, or facultative anaerobes. As deduced from its genome, M. tuberculosis has the potential to manufacture all of the machinery necessary to synthesize all of its essential vitamins, amino acids, and enzyme co-factors. On the other hand, the inability to culture M. leprae, suggests that it has lost many of its metabolic capabilities, and is now an obligate parasite, dependent on its host for most of its nutritional needs. This goes in accordance with its severely degenerated genome. M. tuberculosis has an unusual cell wall, with an additional layer beyond the peptodiglycan layer, which is rich in unusual lipids, glycolipids, and polysaccharides.It is thought that the more well-known infectious agents such as M. tuberculosis and M. leprae are evolved from a soil bacterium. More specifically, M. tuberculosis arose from a soil bacterium that evolved to infect cows, and then made the jump to humans about the time of animal domestication about 10,000 years ago. M. tuberculosis and M. leprae both grow remarkably slow for bacteria. M. tuberculosis doubles its population every 18-24 hours, while M. leprae doubles its population about every 14 days. This extremely long generation time probably contributes to the chronic nature of both diseases.Both leprosy and tuberculosis, caused by M. leprae and M. tuberculosis respectively, are considered chronic pathogens, causing diseases that takes months, sometimes years, to develop, and, without treatment, eventually result in a slow and excruciatingly painful death. Two of the oldest recognized pathogens, tuberculosis and leprosy have been plaguing mankind since the first stages of domestication some 10,000 years ago. Most mycobacteria do not cause disease, so M. tuberculosis and M. leprae are hardly typical of the genus, and are consequently called 'wayward sons of honorable parents.' In recent years, with the ushering in of the antibiotic age, when penicillin is used to treat everything, new, drug-resistant forms of these pathogens have begun to emerge allowing both diseases to become serious threats to humanity once again. In 1993 with rates of reported cases of tuberculosis on the rise, the World Health Organization declared it a global emergency and began to make efforts to heighten public awareness.In addition to an increase in people contracting tuberculosis, it has formed a deadly partnership with the AIDS virus. The two diseases feed off of each other. With the depleted immune system caused by AIDS comes increased susceptibility to tuberculosis, which in turn accelerates the progress of AIDS.Tuberculosis sets up camp in the lungs of its host, where it, for the most part, coexists with its host while lazily following its daily division routine, yet causing no outward symptoms, but rather just accumulating numbers in order to launch its assault on its unsuspecting host. Macrophages that normally ingest pathogens in order to destroy them, are made into a cozy home by the tubercle bacillus. Tubercolosis is transmitted from person to person through the air, and requires a six to twelve month regimen of at least two drugs to rid its host of the infection. Drug-resistant strains of the pathogen are mainly the result of patients not following directions in the taking of their medication, and thus do not kill off the disease entirely.Leprosy, popularly thought to be a disease of the past, has over 690,000 new cases reported annually, but the mode of transmission still remains a mystery. The infection is very slow to develop, taking anywhere from six months to ten years. Leprosy is a neurological disease, that mainly accumulates in the extremities, and inhabits macrophages through which it infects the Schwann cells of the peripheral nervous system. The lack of myelin produced by the infected Schwann cells leads to nerve damage, and sensory loss. There are two forms of leprosy, tuberculin and lepromatous. Lepromatous leprosy is the more contagious form, in which the body is unable to mount a resistance, and the bacterium freely multiplies in the skin, causing nodules to appear all over the body and face. It also infects the mucous membranes of the nose and throat, creating a rather disturbing physique. Tuberculin leprosy causes an immune defense in which the body's cells crowd around the invading organisms in the deep skin layers, which causes hair follicles, sweat glands, and nerve endings at the site to be destroyed. The skin then becomes dry and discolored and loses feeling. This most often affects the fingers and toes which are now fragile and injury prone, and often become mutilated and fall off. (From http://microbewiki.kenyon.edu/index.php/Mycobacterium) (MicrobeWiki: Mycobacterium)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis CDC1551 Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 83331 NC_002755.2 Bac0001666 Escherichia coli K-12 "Escherichia coli K-12 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which corresponds to the normal physiological temperature of warm-blooded hosts. As a facultative anaerobe, E. coli K-12 is capable of growth in both aerobic and anaerobic conditions, allowing it to adapt to varying environments within its host-associated habitat.↵↵E. coli K-12 is widely used as a model organism in microbiology and genetics due to its well-characterized genome and ease of cultivation. Its ability to survive and proliferate in diverse conditions makes it an invaluable tool for studying cellular processes and gene expression. The strain's adaptability may also reflect its evolutionary success and the complex interactions it has with its host environment.↵↵Interestingly, the facultative anaerobic nature of E. coli K-12 enables it to play a role in the microbial community of the gut, where it can switch between utilizing oxygen and fermentative metabolism, thereby influencing the overall dynamics of gut microbiota. This versatility not only sheds light on the bacterium's ecological role but also underscores its significance in understanding microbial interactions and community structure within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 83333 SSTU00000000.1 Bac0001667 Cystobacter ferrugineus str. Cbfe23 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter ferrugineus 83449 MPIN00000000.1 Bac0001668 Stigmatella erecta Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella erecta 83460 FOIJ00000000.1 Bac0001669 Corallococcus exiguus str. 14696 Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exiguus 83462 VEWR00000000.1 Bac0001670 Chlamydia muridarum Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum 83560 NZ_CP007217.1 Bac0001671 Leclercia adecarboxylata str. Palotina Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Leclercia adecarboxylata 83655 QVNT00000000.1 Bac0001672 Leclercia adecarboxylata Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Leclercia adecarboxylata 83655 NZ_CP040893.1 Bac0001673 Pseudomonas syringae pv. papulans "Pseudomonas syringae pv. papulans is a Gram-negative, rod-shaped bacterium that typically occurs as single cells and is categorized as a heterotrophic aerobe. This microbe thrives in a variety of habitats, reflecting its adaptability to diverse environmental conditions. As an aerobic organism, P. syringae pv. papulans requires oxygen for its metabolic processes, which aligns with its classification as a heterotroph, relying on organic compounds for energy.↵↵The ability of P. syringae pv. papulans to inhabit multiple environments suggests a versatile ecological role, possibly contributing to nutrient cycling within its ecosystems. Its presence in various habitats may also indicate potential interactions with other microorganisms, plants, or environmental factors, underscoring the complexity of microbial communities. This adaptability highlights its potential significance in ecological studies, particularly in understanding microbial dynamics in different environments and the role of bacteria in environmental health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 83963 RBPE00000000.1 Bac0001674 Pseudomonas coronafaciens pv. porri Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 83964 RBUH00000000.1 Bac0001675 Lacrimispora saccharolytica "Lacrimispora saccharolytica is a nonsporulating, anaerobic microbe that exhibits fermentative metabolism and functions as a chemoheterotroph. This bacterium is known for its ability to utilize carbohydrates as an energy source, effectively breaking down complex sugars through fermentation processes. Its anaerobic nature suggests that it thrives in environments devoid of oxygen, making it a vital player in anaerobic ecosystems such as those found in densely populated microbial communities, like those in the human gut or in sludge digesters. While the specific habitat of L. saccharolytica remains unidentified, its metabolic capabilities indicate a strong potential for contributions to biochemical cycles in organic-rich environments. By fermenting sugars, this microbe generates organic acids and other metabolites, which can influence the pH and nutrient dynamics of its surroundings, thereby impacting other microbial populations and potentially affecting nutrient availability. The ecological significance of L. saccharolytica lies in its role within the anaerobic digestion processes. By effectively converting organic material into valuable by-products, it can enhance the efficiency of biogas production and contribute to waste management solutions. This function underscores the importance of such microbes in biotechnological applications, where harnessing their fermentative capabilities could lead to sustainable energy generation and improved nutrient recycling in agricultural systems." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Lacrimispora saccharolytica Negative Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Free living Singles-Pairs Nonsporulating 84030 NFKU00000000.1 Bac0001676 Gordonia alkanivorans str. YC-RL2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia alkanivorans 84096 NZ_CP027114.1 Bac0001677 Amycolatopsis thermoflava str. DSM 44348 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis thermoflava 84480 RKHY00000000.1 Bac0001678 Dolosicoccus paucivorans "Dolosicoccus paucivorans is a Gram-positive, ovoid-shaped microbe characterized by its microaerophilic nature, indicating that it thrives in environments with reduced oxygen levels. This organism possesses a distinctive morphology, which may influence its interaction with surrounding microbial communities and its adaptation to specific ecological niches. The Gram-positive classification suggests the presence of a thick peptidoglycan layer in its cell wall, potentially contributing to its resilience in certain environments.↵↵As a microaerophile, Dolosicoccus paucivorans likely occupies habitats where oxygen concentrations are lower than atmospheric levels, such as in certain soils, sediments, or in association with other organisms in symbiotic or competitive relationships. The ability to thrive under these conditions may provide insights into its metabolic pathways and ecological roles, particularly in biogeochemical cycles that require low oxygen levels.↵↵The unique combination of its Gram-positive nature and microaerophilic requirement may also suggest potential interactions with other microorganisms within its habitat, possibly influencing nutrient cycling and community dynamics. Further exploration of Dolosicoccus paucivorans could reveal its specific contributions to these environments, enhancing our understanding of microbial diversity and function in low-oxygen ecosystems." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Dolosicoccus Dolosicoccus paucivorans Gram-positive ovoid non-motile microaerophile 84521 PNHE00000000.1 Bac0001679 Parasynechococcus marenigrum WH 8102 "Parasynechococcus marenigrum WH 8102 is a Gram-negative, coccoid bacterium that exists predominantly as single cells. This microorganism is characterized as a photoautotroph, deriving energy through photosynthesis, which allows it to thrive in various aquatic habitats. Its facultative oxygen requirement indicates that it can adapt to fluctuating oxygen levels, enabling it to inhabit diverse environmental niches, including both oxygen-rich and oxygen-poor aquatic systems.↵↵As a member of the photoautotrophic community, P. marenigrum WH 8102 plays a significant role in primary production within its ecosystem. By utilizing sunlight as an energy source, it contributes to the base of the food web, supporting a range of organisms that depend on organic matter generated through photosynthesis. Furthermore, its ability to tolerate varying oxygen levels suggests potential resilience to changing environmental conditions, making it an interesting subject for studies on microbial adaptation in aquatic ecosystems. This adaptability may also have implications for biogeochemical cycles, particularly in relation to carbon fixation and nutrient cycling in marine environments." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Parasynechococcus Parasynechococcus marenigrum Negative Cocci Yes 2 Facultative Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Singles 84588 NC_005070.1 Bac0001680 Clostridium frigidicarnis Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium frigidicarnis anaerobic 84698 FOKI00000000.1 Bac0001681 Lentzea waywayandensis Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea waywayandensis 29 mesophilic 84724 FOYL00000000.1 Bac0001682 Umezawaea tangerina str. DSM 44720 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Umezawaea Umezawaea tangerina 84725 PVTF00000000.1 Bac0001683 Williamsia muralis str. DSM 44343 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia muralis microaerophile 29 mesophilic 85044 RBKV00000000.1 Bac0001684 Mannheimia varigena str. OADDL-MV1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia varigena 85404 VCDS00000000.1 Bac0001685 Photobacterium damselae subsp. damselae str. 111bp-OG15A Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 VANG00000000.1 Bac0001686 Photobacterium damselae subsp. damselae str. KC-Na-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 NZ_CP021154.1 Bac0001687 Photobacterium damselae subsp. damselae str. 64bp-OG9 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 VANE00000000.1 Bac0001688 Photobacterium damselae subsp. damselae str. 70dps-OG12 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 VANF00000000.1 Bac0001689 Photobacterium damselae subsp. damselae str. 89dp-OG16 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 VANH00000000.1 Bac0001690 Photobacterium damselae subsp. damselae Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 JZSI00000000.1 Bac0001691 Anaerobacillus arseniciselenatis str. DSM 15340 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Anaerobacillus Anaerobacillus arseniciselenatis anaerobic 85682 MLQQ00000000.1 Bac0001692 Achromobacter xylosoxidans "Achromobacter xylosoxidans is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, which relies on organic compounds for energy production, and can be found in various body sites, including the respiratory, urinary, and gastrointestinal tracts, in humans and animals, and is an Obligate Aerobe, requiring oxygen to survive. As a Gram-negative bacterium, Achromobacter xylosoxidans has a unique outer membrane composition, which plays a crucial role in its pathogenicity and antibiotic resistance. Its rod-shaped morphology allows it to adhere to and colonize various surfaces, including medical devices and host tissues. The mesophilic temperature preference of Achromobacter xylosoxidans enables it to thrive in a wide range of environments, from 20°C to 37°C, making it a versatile and opportunistic pathogen. As a Chemoheterotroph, Achromobacter xylosoxidans relies on the degradation of organic compounds, such as amino acids, carbohydrates, and fats, to produce energy. This energy production mechanism involves the breakdown of these compounds through various enzymatic reactions, resulting in the generation of ATP, which is then used to fuel its metabolic processes. Achromobacter xylosoxidans can be found in various body sites, including the respiratory, urinary, and gastrointestinal tracts, highlighting its ability to adapt to different environments and cause infections in various parts of the body. Achromobacter xylosoxidans is an Obligate Aerobe, requiring oxygen to survive and grow, which makes it well-suited to colonize areas with high oxygen levels, such as the lungs and skin. The microbe's ability to produce biofilms and form complex communities with other microorganisms allows it to persist in environments with limited nutrient availability, making it a challenging pathogen to eradicate. Achromobacter xylosoxidans has been implicated in various infections, including pneumonia, bacteremia, and urinary tract infections, particularly in individuals with compromised immune systems, and its presence has been detected in hospital environments, highlighting the need for strict infection control measures to prevent its spread." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter xylosoxidans Negative Rod Yes 1 1 Aerobe HostAssociated Free living 85698 CYTP00000000.1 Bac0001693 Bartonella tribocorum str. C635 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella tribocorum 85701 NJPP00000000.1 Bac0001694 Alkalispirillum mobile str. DSM 12769 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Alkalispirillum Alkalispirillum mobile 85925 RCDA00000000.1 Bac0001695 Mycolicibacterium brumae Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium brumae Fresh water; soil 85968 PDCN00000000.2 Bac0001696 Idiomarina abyssalis str. 017G.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina abyssalis 86102 QRBK00000000.1 Bac0001697 Pseudomonas meliae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas meliae 86176 LJQT00000000.1 Bac0001698 Malikia spinosa Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Malikia Malikia spinosa 86180 PVLR00000000.1 Bac0001699 Pseudomonas lundensis str. AU1044 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lundensis 86185 CP017687.2 Bac0001700 Pseudomonas chlororaphis subsp. aurantiaca Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis 86192 NZ_CP027741.1 Bac0001701 Pseudomonas thivervalensis str. SC5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas thivervalensis 86265 NZ_CP022201.1 Bac0001702 Pseudomonas thivervalensis str. LMG 21626 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas thivervalensis 86265 LRSO00000000.1 Bac0001703 Mogibacterium pumilum Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Mogibacterium Mogibacterium pumilum 86332 NZ_CP016199.1 Bac0001704 Clostridium pasteurianum BC1 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium pasteurianum 86416 NC_021183.1 Bac0001705 Mesomycoplasma dispar str. GS01 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma dispar 86660 NZ_CP024161.1 Bac0001706 Priestia flexa str. 1-2-1 "Priestia flexa str. 1-2-1 is a Gram-positive, rod-shaped bacterium that primarily inhabits the rhizosphere of plants, as well as plant roots and various soil environments. This organism is classified as an aerobe, indicating that it requires oxygen for growth and metabolism. ↵↵The presence of P. flexa str. 1-2-1 in the plant rhizosphere suggests a potential role in plant-microbe interactions, possibly contributing to nutrient cycling or influencing plant health. Its isolation from soil environments further underscores its adaptability to diverse terrestrial ecosystems. The ability to thrive in the rhizosphere indicates that this strain may engage in mutualistic associations with plants, which could enhance plant growth or resilience. ↵↵Understanding the ecological role of Priestia flexa str. 1-2-1 may provide insights into the dynamics of soil microbiomes and their influence on plant health, particularly in sustainable agricultural practices. The interactions of this bacterium with plant roots could be pivotal in exploring biocontrol methods or promoting plant growth in various soil conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia flexa Positive Rod Aerobe plant rhizosphere; plant roots; soil; soils 86664 NZ_CP040364.1 Bac0001707 Acidovorax defluvii str. DSM 12644 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax defluvii aerobic 86669 QLTU00000000.1 Bac0001708 Pseudomonas cannabina Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cannabina 86840 LJPX00000000.1 Bac0001709 Aerococcus christensenii str. KA00635 "Aerococcus christensenii strain KA00635 is a Gram-positive coccus that is nonsporulating and primarily found in the gut of its host. As a member of the genus Aerococcus, this strain contributes to the complex microbial community within the gastrointestinal tract, where it may play a role in various metabolic processes. The spherical shape of the cells allows for efficient packing and interaction with other gut microbiota, potentially influencing nutrient absorption and digestion.↵↵This strain's presence in the host gut highlights its adaptability to this specialized environment, where it may engage in symbiotic relationships with other microbial species. The nonsporulating characteristic suggests that Aerococcus christensenii str. KA00635 relies on stable conditions within the gut for survival and proliferation, rather than employing sporulation as a strategy for enduring adverse conditions. ↵↵Further studies could elucidate the specific roles that this strain plays in gut health and its interactions with the host's immune system, providing insights into the broader implications of Aerococcus species in microbiome dynamics. Understanding the functional contributions of Aerococcus christensenii str. KA00635 could enhance our knowledge of gut microbiota and its relevance to host physiology and health." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus christensenii positive Cocci No 1 Mesophilic Host gut Nonsporulating 87541 LSCQ00000000.1 Bac0001710 Burkholderia multivorans "Burkholderia multivorans is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, categorized as a chemoheterotroph, which obtains its energy by decomposing organic matter, and can be found in various body sites of multiple species, including the respiratory, urinary, and gastrointestinal tracts of humans, animals, and plants, and is a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments. As a Gram-negative bacterium, B. multivorans has a unique outer membrane containing lipopolysaccharides, which provides protection against environmental stresses. Its rod-shaped morphology allows for efficient movement and colonization in various niches. The mesophilic temperature preference of B. multivorans enables it to thrive in a wide range of environments, from soil to human tissues. As a chemoheterotroph, B. multivorans relies on the breakdown of organic compounds to produce energy, utilizing a variety of enzymes to degrade complex molecules. Its ability to inhabit multiple body sites and species is a testament to its adaptability and versatility. As a facultative anaerobe, B. multivorans can switch between aerobic and anaerobic respiration, allowing it to survive in diverse environments. Burkholderia multivorans has been found to play a significant role in the degradation of pollutants, such as polycyclic aromatic hydrocarbons, and has been explored for its potential in bioremediation applications, with some strains exhibiting remarkable resistance to heavy metals and other toxic compounds." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 87883 PVGM00000000.1 Bac0001711 Kitasatospora cineracea Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora cineracea 88074 RKQG00000000.1 Bac0001712 delta proteobacterium NaphS2 Deltaproteobacteria delta proteobacterium NaphS2 88274 ADZZ00000000.1 Bac0001713 Dorea longicatena "Dorea longicatena is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, which obtains its energy by breaking down organic compounds, and can be found in various body sites across different species, including the human gut, and is an obligate anaerobe, requiring the absence of oxygen to survive. The Gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, providing it with a robust defense mechanism. Its rod shape allows for efficient movement and colonization in its environment. As a mesophile, Dorea longicatena grows best in moderate temperatures, typically between 20-45°C, making it well-suited for the human gut, where temperatures are relatively stable.As a chemoheterotroph, Dorea longicatena relies on the breakdown of organic compounds to produce energy, using enzymes to catalyze the reactions. This process allows the microbe to thrive in environments with abundant organic matter, such as the human gut, where it can feed on undigested carbohydrates and other nutrients. The absence of oxygen is crucial for the microbe's survival, as it is an obligate anaerobe, and even small amounts of oxygen can be detrimental to its growth.Dorea longicatena plays a significant role in the human gut microbiome, contributing to the breakdown of complex carbohydrates and producing short-chain fatty acids, which provide energy to the host. Its presence has also been linked to various health benefits, including the regulation of the immune system and the maintenance of a healthy gut barrier. The unique characteristics of Dorea longicatena make it an essential component of the human gut microbiome, and its study has shed light on the complex interactions between microbes and their hosts." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea longicatena Positive Anaerobe 88431 CYYM00000000.1 Bac0001714 Natrinema versiforme Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema versiforme 88724 NZ_CP040330.1 Bac0001715 Ligilactobacillus acidipiscis str. JCM 10692 "Ligilactobacillus acidipiscis strain JCM 10692 is a Gram-positive, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds for energy. This strain optimally thrives at a temperature of 37.0°C, which is indicative of its adaptability to warm environments. As an aerobic organism, L. acidipiscis str. JCM 10692 requires oxygen for its metabolic processes, positioning it within habitats where oxygen availability is sufficient.↵↵The ability of Ligilactobacillus species to inhabit multiple environments suggests a versatile ecological role, potentially contributing to the microbiota of various substrates, including fermented food products or diverse ecological niches. The presence of this strain in different habitats may also reflect its capacity to adapt to varying nutrient profiles and environmental conditions, which is a common trait among lactic acid bacteria. This adaptability may play a crucial role in its survival and functionality in complex microbial communities, where competition and cooperation among species are vital for ecological balance. Further research into the specific ecological interactions and contributions of L. acidipiscis could provide insights into its role in fermentation processes and its potential applications in food science and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus acidipiscis Positive Rod No 1 Aerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 89059 BDQH00000000.1 Bac0001716 Ligilactobacillus acidipiscis "Ligilactobacillus acidipiscis is a Gram-positive, rod-shaped bacterium that exhibits aerobic respiration and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. This nonsporulating microbe thrives at an optimal temperature of 37.0°C, which aligns with the temperature range commonly found in various habitats, suggesting its potential adaptability to different environments.↵↵Ligilactobacillus acidipiscis has been isolated from multiple habitats, indicating its ecological versatility. Its aerobic nature implies a dependence on oxygen-rich environments, which could influence its distribution and interactions within microbial communities. The ability of this bacterium to metabolize a variety of organic substrates enhances its potential roles in fermentation processes and contributes to its significance in food microbiology.↵↵The presence of Ligilactobacillus acidipiscis in diverse habitats may reflect its capacity to influence and maintain microbial balance in ecosystems, particularly in environments where organic matter is abundant. Understanding the ecological roles and interactions of this microbe could provide insights into its contributions to nutrient cycling and its potential applications in biotechnology and food production." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus acidipiscis Positive Rod No 1 Aerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 89059 JQBK00000000.1 Bac0001717 Ignavigranum ruoffiae "Ignavigranum ruoffiae is a Gram-positive, spherical bacterium that exhibits microaerophilic growth characteristics. This microbe thrives in environments with reduced oxygen levels, which is indicative of its adaptive metabolism suited for low-oxygen conditions. Unlike some other bacterial species, Ignavigranum ruoffiae does not form spores, suggesting a reliance on stable ecological niches for survival rather than on resilience to extreme environmental stressors.↵↵The spherical morphology of Ignavigranum ruoffiae may confer specific advantages in its natural habitats, potentially influencing its interactions with other microorganisms and its ability to adhere to surfaces in microaerophilic environments. The absence of sporulation may limit its survival in harsher conditions; however, this trait might also facilitate a more rapid growth rate in suitable environments where competition for resources is present.↵↵Understanding the physiological traits of Ignavigranum ruoffiae can provide insights into its ecological role, particularly in microaerophilic ecosystems where oxygen levels fluctuate. This organism may play a significant part in nutrient cycling or in the degradation of organic matter within such environments. Further research into its metabolic pathways and interactions with other microorganisms could elucidate its function in the broader microbial community." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Ignavigranum Ignavigranum ruoffiae Gram-positive sphere non-motile microaerophile non-spore-forming 89093 FOEN00000000.1 Bac0001718 Gluconacetobacter liquefaciens str. DSM 5603 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconacetobacter Gluconacetobacter liquefaciens aerobic 89584 QQAW00000000.1 Bac0001719 Alicyclobacillus hesperidum Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus hesperidum 89784 FNOJ00000000.1 Bac0001720 Moraxella canis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella canis aerobic 90239 MUXT00000000.1 Bac0001721 Oligella urethralis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Oligella Oligella urethralis 90245 UATH00000000.1 Bac0001722 Salmonella enterica subsp. enterica serovar Typhi "Salmonella enterica subsp. enterica serovar Typhi is a Gram-negative bacterium characterized by its spirilla shape and the ability to exist as single cells or in chains. This microbe is a facultative anaerobe, enabling it to thrive in both aerobic and anaerobic environments, with an optimal growth temperature of 37.0°C, which aligns with the human body temperature, reflecting its association with host environments. As a chemoorganotroph, S. enterica serovar Typhi derives energy from organic compounds, which is consistent with its habitat being primarily host-associated.↵↵The ecological niche of S. enterica serovar Typhi highlights its adaptation to life within a host, where it can exploit various organic substrates. This adaptation may contribute to its survival and persistence in the gastrointestinal tract of humans, where it can navigate complex microbial communities and host defenses. Understanding these traits can provide insights into the bacterium's role in human health and disease dynamics, particularly in relation to its transmission and survival strategies within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 90370 SMQE00000000.1 Bac0001723 Methanothrix sp. Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp. 90426 RPOO00000000.1 Bac0001724 Campylobacter hyointestinalis subsp. hyointestinalis "Currently, very little is known about the microbe 'Campylobacter hyointestinalis subsp. hyointestinalis'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis Negative 91352 NIQE00000000.1 Bac0001725 Campylobacter hyointestinalis subsp. lawsonii str. RM9752 "Campylobacter hyointestinalis subsp. lawsonii str. RM9752 is a Gram-negative bacterium characterized by its spiral shape and microaerophilic growth requirements. This subspecies of Campylobacter is part of a genus known for its motility, typically attributed to a single polar flagellum, allowing for a distinctive corkscrew-like movement in viscous environments. ↵↵As a member of the Campylobacter genus, C. hyointestinalis subsp. lawsonii str. RM9752 is adapted to thrive in specific ecological niches, often associated with the gastrointestinal tracts of various animal hosts, particularly ruminants. Its microaerophilic nature suggests a preference for environments with reduced oxygen levels, which is consistent with its habitat within the intestines where oxygen concentration is lower than in the external environment. ↵↵Although this strain has not been extensively studied for its pathogenic potential, Campylobacter species are generally recognized for their involvement in gastrointestinal diseases in animals and humans. The ecological role of C. hyointestinalis subsp. lawsonii str. RM9752 may encompass nutrient cycling within the gut microbiome of its host, contributing to digestive processes. Overall, further investigation into the specific interactions of this strain within its ecological niche could provide insights into its functional contributions to host health and microbial community dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis Negative 91353 QMAH00000000.1 Bac0001726 Desulforhopalus singaporensis Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulforhopalus Desulforhopalus singaporensis anaerobic 91360 FNJI00000000.1 Bac0001727 Synechococcus sp. PCC 7335 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. PCC 7335 91464 ABRV00000000.1 Bac0001728 Legionella beliardensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella beliardensis microaerophile 91822 UGNV00000000.1 Bac0001729 Legionella pneumophila subsp. pneumophila "Legionella pneumophila subsp. pneumophila is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a chemoorganotroph, indicating that it derives energy through the oxidation of organic compounds. It is an aerobic organism, requiring oxygen for metabolic processes. ↵↵L. pneumophila subsp. pneumophila is primarily associated with host environments, suggesting that it may thrive in specific ecological niches, such as within protozoa or other aquatic environments where it can evade predation and proliferate. The association with hosts is critical for its survival and propagation, highlighting the importance of understanding its life cycle and interaction with other microorganisms in its habitat. ↵↵This bacterium is significant in the context of water systems, as it can colonize man-made water distribution systems, leading to potential health risks for humans. Its ability to persist in host-associated environments underscores the need for continued research into its ecological role and the mechanisms it employs to survive in diverse habitats. Understanding these traits not only provides insights into its biology but also informs strategies for controlling its presence in human-associated water systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles 91891 QWDR00000000.1 Bac0001730 [Mycoplasma] anseris Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma [Mycoplasma] anseris 92400 NZ_CP030140.1 Bac0001731 Metamycoplasma cloacale str. NCTC 10199 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma cloacale 92401 NZ_CP030103.1 Bac0001732 Paraburkholderia tropica str. P-31 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia tropica 92647 LXGI00000000.1 Bac0001733 [Brevibacterium] flavum Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium [Brevibacterium] flavum 92706 NZ_CP011309.1 Bac0001734 Xanthomonas phaseoli pv. dieffenbachiae str. LMG 25940 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas phaseoli 92828 JPYI00000000.2 Bac0001735 Ketogulonicigenium robustum str. SPU B003 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ketogulonicigenium Ketogulonicigenium robustum 92947 NZ_CP019940.1 Bac0001736 Prochlorococcus marinus str. MIT 9201 "Prochlorococcus marinus strain MIT 9201 is a Gram-negative, coccoid-shaped marine cyanobacterium that plays a significant role in aquatic ecosystems as a photosynthetic organism. This microbe thrives in oceanic environments, where it utilizes light as its primary energy source, contributing to primary production and influencing biogeochemical cycles. Prochlorococcus marinus is notably adapted to oligotrophic conditions, demonstrating remarkable efficiency in light absorption and carbon fixation. ↵↵The organism's unique morphology, characterized by its cocci shape, allows it to occupy specific niches within the water column, where it can optimize light capture and nutrient uptake. As a member of the cyanobacterial group, it possesses chlorophyll a and other accessory pigments that facilitate photosynthesis in varying light conditions, enhancing its survival in diverse aquatic habitats.↵↵Prochlorococcus marinus str. MIT 9201 is particularly significant in the context of global carbon cycles, as its photosynthetic activity contributes to carbon sequestration in the oceans. By converting inorganic carbon into organic matter, this cyanobacterium supports the marine food web and influences nutrient dynamics. Its prevalence in open ocean waters underscores its ecological importance, as it can significantly impact ocean productivity and the overall health of marine ecosystems. Understanding the biological and ecological functions of Prochlorococcus marinus str. MIT 9201 enhances our insight into the complex interactions within marine environments and the vital roles that microbial communities play in sustaining oceanic health." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 93057 JNAL00000000.1 Bac0001737 Prochlorococcus marinus str. MIT 9211 str. MIT9211 "Prochlorococcus marinus str. MIT 9211 is a Gram-negative, coccoid marine cyanobacterium that utilizes photosynthesis as its primary energy source. This strain is part of a genus known for its significance in marine ecosystems, contributing to primary production in oligotrophic seas. Prochlorococcus species are characterized by their small cell size and high abundance, particularly in nutrient-poor waters where they play a crucial role in carbon cycling and oxygen production.↵↵The photosynthetic capabilities of Prochlorococcus marinus str. MIT 9211 allow it to harness light energy, which is essential for survival and growth in aquatic environments. This trait underscores the organism's ecological role as a primary producer, forming the base of the food web in its habitat. The coccoid shape of this strain may facilitate its buoyancy and nutrient uptake in the vast marine waters it inhabits, suggesting an adaptation to its environment that enhances its photosynthetic efficiency.↵↵Overall, the prominence of Prochlorococcus marinus str. MIT 9211 in the ocean highlights its potential impact on global biogeochemical cycles, particularly in relation to carbon fixation. Understanding the traits and functions of this strain contributes to a broader comprehension of microbial contributions to oceanic health and climate regulation." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 93059 NC_009976.1 Bac0001738 Prochlorococcus marinus str. MIT 9215 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus MIT 9215 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 93060 NC_009840.1 Bac0001739 Staphylococcus aureus subsp. aureus COL "Staphylococcus aureus subsp. aureus COL is a Gram-positive bacterium with a coccal shape, classified as a mesophile favoring moderate temperatures between 20°C and 45°C, a chemoheterotroph that derives energy from organic compounds. This opportunistic pathogen colonizes various body sites in humans, including the skin, nasal passages, throat, and mucous membranes.As a Gram-positive organism, S. aureus COL possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining process, appearing purple under microscopic examination. Its coccal shape allows S. aureus to form clusters reminiscent of grapes, a characteristic that aids in its identification in laboratory settings. Being a mesophilic microorganism, it thrives optimally within the human body, where temperatures are conducive to its growth. As a chemoheterotroph, S. aureus COL requires organic substances for both carbon and energy, primarily utilizing sugars, amino acids, and lipids found in host tissues or extracellular fluids. It is classified as a facultative anaerobe, enabling it to survive and grow in both the presence and absence of oxygen. This adaptability allows the bacterium to colonize diverse environments within the human body, from aerobic surfaces of the skin to the anaerobic conditions of deeper tissues. Beyond its pathogenic potential, S. aureus COL is notable for its capacity to form biofilms, making it particularly difficult to eradicate from surfaces, both biological and synthetic. Its ability to produce a variety of virulence factors, including toxins and enzymes, contributes to a wide range of infections, from minor skin conditions to severe systemic diseases. Furthermore, S. aureus COL has been instrumental in research as a model organism for studying antibiotic resistance mechanisms due to its notorious strain, MRSA (Methicillin-resistant Staphylococcus aureus)." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus COL Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles Nonsporulating 93062 NC_002951.2 Bac0001740 Sphingomonas koreensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas koreensis 93064 NZ_CP018820.1 Bac0001741 Pandoraea apista Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea apista 93218 CEWL00000000.1 Bac0001742 Pandoraea norimbergensis str. DSM 11628 "Pandoraea norimbergensis str. DSM 11628 is a Gram-negative, non-spore-forming bacterium that exhibits strict aerobic metabolism. This organism is characterized by its unique morphological and physiological traits, positioning it within the broader context of microbial diversity. As a member of the genus Pandoraea, it is noteworthy for its distinctive metabolic capabilities and environmental adaptability.↵↵The Gram-negative nature of Pandoraea norimbergensis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may contribute to its resilience in various environments. The absence of sporulation suggests that this strain relies on other survival strategies in response to environmental stressors rather than forming spores, which are common survival structures in many bacteria. Its aerobic requirement implies that it thrives in oxygen-rich conditions, utilizing oxygen as the terminal electron acceptor during metabolic processes.↵↵Research on Pandoraea norimbergensis may provide insights into the metabolic pathways of non-spore-forming Gram-negative bacteria in aerobic environments. Understanding the physiological traits of this microbe could enhance knowledge of its ecological roles, particularly in nutrient cycling and interactions within microbial communities. Notably, the specific adaptations of Pandoraea norimbergensis to aerobic conditions may offer clues on how similar bacteria optimize their metabolism in oxygen-abundant niches, potentially influencing their distributions in nature." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea norimbergensis Gram-negative aerobic non-spore-forming 93219 NZ_CP013480.3 Bac0001743 Pandoraea pnomenusa "Pandoraea pnomenusa is a Gram-negative, non-spore-forming bacterium that exhibits aerobic metabolism. This microbe is characterized by its rod-shaped morphology and its ability to thrive in oxygen-rich environments. As a member of the Burkholderiaceae family, it is notable for its unique biochemical properties and metabolic versatility, which allow it to utilize a range of organic compounds as carbon sources.↵↵The aerobic nature of Pandoraea pnomenusa suggests that it plays a role in environments where oxygen is readily available, potentially contributing to the breakdown of organic matter. Its Gram-negative cell wall structure may afford it certain advantages in terms of resistance to antibiotics and environmental stressors, although specific resistance mechanisms have not been detailed.↵↵Recent studies indicate that members of the Pandoraea genus, including P. pnomenusa, are often isolated from various ecological niches, including soil and water. This suggests that they may be involved in important biogeochemical cycles, possibly influencing nutrient availability and microbial community dynamics. Further research is warranted to elucidate the specific ecological roles of Pandoraea pnomenusa, particularly in relation to its interactions with other microorganisms and its impact on environmental processes. Understanding these dynamics may provide insights into the functional significance of this bacterium in its native habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea pnomenusa Gram-negative aerobic non-spore-forming 93220 UGSG00000000.1 Bac0001744 Pandoraea sputorum "Pandoraea sputorum is a Gram-negative, non-spore-forming bacterium that exhibits aerobic metabolism. This microbe is characterized by its rod-shaped morphology and is part of the diverse group of bacteria associated with various environmental niches. As an aerobic organism, P. sputorum requires oxygen for its growth and metabolic processes, indicating a potential competency in utilizing diverse organic compounds in oxygen-rich environments.↵↵The absence of sporulation suggests that P. sputorum relies on other survival strategies to withstand environmental stressors, which may include the production of protective extracellular polymers or biofilms. These adaptations enable the bacterium to thrive in competitive ecological contexts, likely contributing to its persistence in various habitats.↵↵Furthermore, the unique combination of traits observed in P. sputorum, particularly its Gram-negative cell wall structure and aerobic lifestyle, may position it as an interesting candidate for studies related to microbial interactions in oxygenated environments. This could include investigations into its role in biogeochemical cycles or potential contributions to microbial communities in specific ecological settings. Overall, P. sputorum exemplifies the complex adaptations of bacteria in maintaining viability and ecological function in diverse aerobic environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea sputorum Gram-negative aerobic non-spore-forming 93222 NZ_LT906435.1 Bac0001745 Edwardsiella hoshinae Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella hoshinae 93378 UFXZ00000000.1 Bac0001746 Fervidobacterium pennivorans str. DYC Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium ngatamarikiense 93466 NZ_CP011393.1 Bac0001747 Shewanella sp. ANA-3 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. . They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella strain ANA-3 was originally isolated from a wooden pier within a brackish estuarine environment at Woods Hole, USA, and is characterized by a unique As(V) respiratory metabolism and a remarkable salinity tolerance range. Moreover, ANA-3 grows faster and at higher temperatures (37 C) than many other Shewanella species. However, it does not grow with DMSO as terminal electron acceptor, as most Shewanella species do (adapted from http://genome.jgi-psf.org/she_a/she_a.home.html). (HAMAP: SHESA)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 ANA-3 Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Multiple Free living Pairs - Singles Nonsporulating No 94122 NC_008573.1 Bac0001748 Pseudomonas vancouverensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas vancouverensis 95300 RRZK00000000.1 Bac0001749 Burkholderia stabilis str. EB159 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia stabilis Yes heart; liver; lung; lungs 95485 QWEX00000000.1 Bac0001750 Burkholderia stabilis str. FERMP-21014 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia stabilis Yes heart; liver; lung; lungs 95485 NZ_AP018112.1 Bac0001751 Burkholderia stabilis str. ATCC BAA-67 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia stabilis Yes heart; liver; lung; lungs 95485 NZ_CP016443.1 Bac0001752 Burkholderia cenocepacia str. YG-3 "Burkholderia cenocepacia str. YG-3 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic metabolism and nonsporulating nature. This microbe is capable of thriving in diverse habitats, which may include both soil and aquatic environments, reflecting its versatile ecological adaptability. The facultative aerobe trait suggests that B. cenocepacia str. YG-3 can utilize both aerobic and anaerobic respiration, allowing it to survive in varying oxygen conditions. ↵↵Notably, the ability to inhabit multiple environments indicates a potential for significant ecological interactions, including nutrient cycling and possibly influencing microbial community dynamics. This versatility may enable B. cenocepacia str. YG-3 to exploit a range of organic substrates, further underscoring its ecological importance. ↵↵Overall, the traits of Burkholderia cenocepacia str. YG-3 reflect a microbe well-suited for diverse environments, highlighting its role in various ecological contexts where oxygen availability fluctuates." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 NZ_CP034546.1 Bac0001753 Burkholderia cenocepacia "Burkholderia cenocepacia is a Gram-negative, rod-shaped bacterium that is mesophilic, thriving in moderate temperatures, and is a chemoheterotroph, requiring organic compounds for energy production, which it obtains through the breakdown of various carbon sources, and can be found in all body sites of various species, including humans, animals, and plants, and is an obligate aerobe, requiring oxygen to survive. As a Gram-negative bacterium, B. cenocepacia has a unique outer membrane structure that plays a crucial role in its pathogenicity and resistance to antibiotics. Its rod-shaped morphology allows it to adhere to and colonize various surfaces, including medical devices and tissues. The mesophilic nature of B. cenocepacia enables it to thrive in a wide range of environments, from soil to water to human tissues. As a chemoheterotroph, B. cenocepacia is capable of breaking down a variety of organic compounds, including sugars, amino acids, and fatty acids, to produce energy. Its ability to infect all body sites of various species makes it a highly versatile and potentially devastating pathogen. The obligate aerobic nature of B. cenocepacia means that it requires a constant supply of oxygen to survive, which is why it is often found in well-ventilated areas, such as the lungs, where it can cause severe respiratory infections. B. cenocepacia is also known to produce a wide range of virulence factors, including biofilms, proteases, and siderophores, which enable it to evade the host immune system and establish chronic infections, and its ability to form complex communities with other microorganisms has led to the development of novel therapeutic approaches, such as phage therapy and antimicrobial peptides, which target the bacterium's unique characteristics and behaviors." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 QTSF00000000.1 Bac0001754 Burkholderia seminalis str. 869T2 "Burkholderia seminalis strain 869T2 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and nonsporulating nature. This organism is capable of thriving in diverse habitats, which suggests a degree of ecological versatility. As a member of the Burkholderia genus, this strain likely exhibits a range of metabolic pathways that enable it to adapt to varying environmental conditions.↵↵The facultative aerobe classification indicates that Burkholderia seminalis 869T2 can utilize oxygen for respiration when available but is also capable of switching to anaerobic processes in its absence. This metabolic flexibility may contribute to its ability to occupy multiple ecological niches, potentially allowing it to engage in diverse interactions with other microorganisms and its environment.↵↵Given the known traits of this strain, further investigation into its specific ecological roles could provide insights into its function within microbial communities. Understanding how Burkholderia seminalis 869T2 interacts with surrounding flora and fauna may reveal important biological processes, such as nutrient cycling or symbiotic relationships, that are facilitated by this organism's unique metabolic capabilities." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia seminalis Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 NZ_CP072521.1 Bac0001755 Burkholderia cenocepacia str. BC-19 "Burkholderia cenocepacia str. BC-19 is a Gram-negative, non-sporulating rod-shaped bacterium that exhibits facultative aerobic metabolism, allowing it to thrive in various habitats. This bacterium is part of the Burkholderia genus, which is known for its remarkable metabolic versatility, enabling it to inhabit diverse environments, including soil, water, and plant surfaces. The facultative aerobic nature of B. cenocepacia str. BC-19 permits it to utilize oxygen when available, while also being capable of anaerobic respiration or fermentation under oxygen-limited conditions. ↵↵Given its ecological adaptability, B. cenocepacia str. BC-19 may play a role in nutrient cycling within its environments, potentially influencing microbial community dynamics. The ability to survive in multiple habitats suggests that this strain might contribute to the biodegradation of organic compounds or the interaction with plant roots, which could be further explored in ecological studies. Understanding the unique traits of this strain may provide insights into its functional roles in various ecosystems and its interactions with other microorganisms." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 JYMX00000000.2 Bac0001756 Burkholderia cenocepacia str. CEIB S5-2 "Burkholderia cenocepacia str. CEIB S5-2 is a Gram-negative, nonsporulating rod-shaped bacterium characterized by its facultative aerobic metabolism. This organism is versatile in its habitat, being found in multiple environments, which suggests its adaptability and potential role in various ecological niches. As a facultative aerobe, B. cenocepacia str. CEIB S5-2 can thrive in both the presence and absence of oxygen, allowing it to exploit diverse substrates and conditions. ↵↵The ability of this strain to inhabit multiple habitats indicates a possible ecological significance, potentially contributing to nutrient cycling or interactions with other microbial communities. Its nonsporulating nature suggests that it may rely on other survival strategies, such as forming biofilms or exhibiting stress-resistant phenotypes, to endure unfavorable environmental conditions. ↵↵Overall, the traits of Burkholderia cenocepacia str. CEIB S5-2 underscore its ecological versatility, which may facilitate its persistence in complex microbial ecosystems. This adaptability not only highlights its potential roles in environmental microbiology but also raises questions about its interactions with other microorganisms in shared habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 LNCR00000000.1 Bac0001757 Methylotuvimicrobium buryatense str. 5GB1C Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylotuvimicrobium Methylotuvimicrobium buryatense 95641 NZ_CP035467.1 Bac0001758 Cupriavidus oxalaticus str. X32 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus oxalaticus 96344 NZ_CP038634.1 Bac0001759 Cupriavidus oxalaticus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus oxalaticus 96344 OGUS00000000.1 Bac0001760 Flavobacterium psychrophilum "Flavobacterium psychrophilum is a Gram-negative, rod-shaped bacterium that is psychrotolerant, thriving in cold temperatures, and is a Chemoheterotroph, requiring organic compounds for energy production, which it obtains through the breakdown of complex molecules, and can be found in various body sites of fish, including the skin, gills, and internal organs, of species such as salmon and trout, and is an Obligate Aerobe, requiring oxygen to survive. The Gram-negative characteristic is due to the composition of its cell wall, which contains a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. Its rod-shaped morphology allows it to move and colonize efficiently in its aquatic environment. As a psychrotolerant microbe, Flavobacterium psychrophilum can grow in a wide range of temperatures, but its optimal growth occurs in cold temperatures, typically below 15°C. Its chemoheterotrophic nature means that it relies on external sources of organic matter for energy and carbon, breaking down complex molecules such as proteins, carbohydrates, and fats. The bacterium's ability to inhabit various body sites of fish makes it a significant pathogen in aquaculture, causing diseases such as bacterial cold water disease and rainbow trout fry syndrome. Flavobacterium psychrophilum's obligate aerobic nature necessitates the presence of oxygen for its metabolic processes, and it is often found in well-oxygenated aquatic environments. The bacterium's ability to produce extracellular enzymes and toxins allows it to infect and cause disease in fish, and its presence has been detected in fish farms and wild fish populations around the world, highlighting the need for effective disease management strategies in aquaculture." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum Rod No 1 15 Chemoheterotroph Psychrophilic Multiple Nonsporulating 96345 QFQM00000000.1 Bac0001761 Pseudomonas synxantha BG33R Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas synxantha 96901 AHPP00000000.1 Bac0001762 Clostridium sp. MD294 "Clostridium sp. MD294 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in anaerobic environments. This microbe is a chemoheterotroph, acquiring energy by metabolizing organic compounds, and is optimally active at a temperature of 37.0°C, which aligns with the typical conditions found in the animal intestinal tract where it is commonly located as part of the intestinal microflora.↵↵As a member of the Clostridium genus, C. sp. MD294 contributes to the complex microbial ecosystem within the gastrointestinal tract of animals, playing a potential role in digestion and nutrient absorption. Its sporulating ability suggests that it can withstand unfavorable conditions, allowing it to persist in the fluctuating environments of the gut. This trait may also facilitate its transmission and establishment in new hosts.↵↵The presence of C. sp. MD294 in animal intestines highlights the significance of anaerobic bacteria in maintaining gut health and homeostasis. The interplay between this microbe and the host's immune system may provide insights into microbial resilience and the importance of microbial diversity in the gut, offering a unique perspective on the potential roles of Clostridium species in animal health and disease prevention. Further research could elucidate its specific contributions to gut function and overall host well-being." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. MD294 Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Sporulating 97138 NZ_CP097810.1 Bac0001763 Pseudomonas marginalis pv. marginalis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marginalis 97473 RBQF00000000.1 Bac0001764 Limosilactobacillus mucosae "Limosilactobacillus mucosae is a Gram-positive, non-sporulating bacterium characterized by its rod shape and tendency to form chains. As a facultative anaerobe, it can thrive in both aerobic and anaerobic environments, making it adaptable to a range of habitats. This microbe exhibits chemoheterotrophic metabolism, deriving its energy from organic compounds, which further supports its versatile ecological presence.↵↵The optimal growth temperature for L. mucosae is around 37.0°C, which aligns with the conditions often found in mammalian hosts, suggesting its potential association with warm-blooded animals. While the specific habitats of L. mucosae are diverse, its adaptability to various environments indicates a possible role in nutrient cycling and microbial interactions within those ecosystems. ↵↵As a member of the lactic acid bacteria group, Limosilactobacillus mucosae may contribute to the fermentation processes in its habitats, potentially influencing the microbial community structure and metabolic activities in its surroundings. This versatility highlights its ecological significance and suggests its potential applications in biotechnology, particularly in fermentation and food preservation. Understanding the specific roles and interactions of L. mucosae in various environments may lead to insights into its functional contributions to health and ecosystem dynamics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus mucosae Positive Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 97478 FNIH00000000.1 Bac0001765 Phocoenobacter skyensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Phocoenobacter Phocoenobacter skyensis 97481 FOBN00000000.1 Bac0001766 Salmonella enterica subsp. enterica serovar Dublin "Salmonella enterica subsp. enterica serovar Dublin is a Gram-negative microbe characterized by its spirilla shape and tendency to form chains or exist as singles. This serovar thrives optimally at 37.0°C, which aligns with the typical body temperature of its host organisms. As a chemoorganotroph, S. enterica subsp. enterica serovar Dublin derives its energy from organic compounds, reflecting its adaptation to a host-associated habitat where it may encounter a variety of organic substrates.↵↵This microbe exhibits microaerophilic growth, indicating that it requires reduced levels of oxygen for optimal metabolism, which is consistent with its life cycle in the intestinal tracts of warm-blooded animals. The specific ecological niche of S. enterica serovar Dublin suggests a specialized role in the microbiota of its hosts, potentially influencing host metabolism and immune responses. Understanding these traits is crucial for comprehending the ecological dynamics and interactions of this serovar within its host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 98360 VACJ00000000.1 Bac0001767 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures (20-45°C). This microbe is classified as a chemoheterotroph, utilizing organic compounds as both energy and carbon sources, making it dependent on the environment for its nutrients. As a facultative anaerobe, it can grow in both the presence and absence of oxygen, which allows it to colonize a variety of host environments. S. Typhimurium LT2 is known to inhabit the intestines of various hosts, including humans, birds, reptiles, and mammals. This adaptability to diverse hosts is a key feature of its pathogenicity, enabling it to infect a wide range of species and contribute to gastrointestinal diseases such as salmonellosis. The bacterium's virulence is often linked to its ability to invade intestinal epithelial cells, leading to inflammation and disrupting normal digestive processes. The microbe also possesses a remarkable genome, which has been sequenced to provide insights into its pathogenic mechanisms. For instance, it contains virulence factors such as Type III secretion systems, which play a crucial role in delivering effector proteins into host cells, promoting infection and evading the immune response. Furthermore, S. Typhimurium LT2 has been extensively studied as a model organism for understanding Salmonella pathogenesis and host interactions, contributing significantly to the field of microbiology. This strain is not only pivotal in research but also serves as a reminder of the importance of food safety practices, as it remains a common cause of foodborne illness worldwide, typically associated with the consumption of undercooked poultry, eggs, and contaminated produce." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica LT2 Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 99287 NC_003277.2 Bac0001768 Rhodococcus koreensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus koreensis 29 mesophilic non-spore-forming 99653 FNSV00000000.1 Bac0001769 [Clostridium] fimetarium Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium [Clostridium] fimetarium 99656 FOJI00000000.1 Bac0001770 Clostridium putrefaciens Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium putrefaciens anaerobic 99675 UFWZ00000000.1 Bac0001771 Schaalia canis "Schaalia canis is a Gram-positive, rod-shaped bacterium that exhibits microaerophilic growth requirements. This organism is characterized by its ability to thrive in environments with reduced oxygen levels, which may have implications for its ecological niches and metabolic processes. The Gram-positive nature of Schaalia canis indicates the presence of a thick peptidoglycan layer in its cell wall, a trait that can influence its susceptibility to certain antibiotics and its overall resilience in varying environments.↵↵Due to its microaerophilic nature, Schaalia canis likely engages in metabolic pathways that utilize oxygen at low concentrations, potentially affecting its interactions within microbial communities. This adaptation might allow it to inhabit specific environments where oxygen is limited, such as certain animal microbiomes or specific soil strata, where it could contribute to nutrient cycling and the breakdown of organic materials.↵↵Schaalia canis might play a role in the gut microbiota of canines, where its Gram-positive characteristics could facilitate beneficial interactions with other gut microbes. Overall, the unique combination of its rod shape, Gram-positive cell wall structure, and microaerophilic nature suggests that Schaalia canis could be an important player in niche environments that require specialized metabolic adaptations. Further research into its ecological roles may reveal additional insights into its contributions to microbial diversity and function in specific habitats." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia canis Gram-positive rod non-motile microaerophile 100469 RQZF00000000.1 Bac0001772 Rhodococcus jostii RHA1 Rhodococcus jostii RHA1. This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. This organism may be useful in the bioremediation of contaminated environmental sites. (NCBI BioProject: bp_list[1]) Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus jostii RHA1 Positive Cocci No Aerobe 30 Mesophilic Terrestrial Free living Filaments Nonsporulating 101510 NC_008271.1 Bac0001773 Burkholderia ubonensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 LPLU00000000.1 Bac0001774 Leptolyngbya sp. PCC 7375 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. PCC 7375 102129 ALVN00000000.1 Bac0001775 Solobacterium moorei "Solobacterium moorei is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found on all body sites in various species, including humans, as an obligate anaerobe. The Gram-positive characteristic indicates that the microbe's cell wall retains the crystal violet stain used in the Gram staining procedure, which is a key method for identifying and classifying bacteria. The rod-shaped morphology of Solobacterium moorei allows it to adapt to different environments and invade host cells. As a mesophilic microbe, it grows best in moderate temperatures, typically between 20-45°C, which is suitable for its presence in human body sites.As a chemoheterotroph, Solobacterium moorei relies on chemical compounds for energy and carbon sources, which it obtains from its host or environment. This characteristic is essential for its survival and growth. The microbe's presence on all body sites in various species suggests its ability to adapt and thrive in diverse environments. Its obligate anaerobic nature means that it requires the absence of oxygen to grow and survive, which is a critical factor in its colonization and infection of host tissues. Solobacterium moorei has been implicated in various diseases, including bacteremia and endocarditis, particularly in immunocompromised individuals. Its ability to form biofilms and produce virulence factors contributes to its pathogenicity. The microbe's genome has been sequenced, revealing a unique set of genes involved in its adaptation to the human host and its ability to evade the immune system. Solobacterium moorei's presence in the human microbiome highlights the complex interactions between microbes and their hosts, and further research is needed to understand its role in human health and disease." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Solobacterium Solobacterium moorei Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 102148 QRWX00000000.1 Bac0001776 Gloeocapsa sp. PCC 73106 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Chroococcaceae Gloeocapsa Gloeocapsa sp. PCC 73106 102232 ALVY00000000.1 Bac0001777 Helicobacter pylori F32 "Helicobacter pylori F32 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and existence as single cells. This organism thrives optimally at 37.0°C, a temperature that aligns with the body temperature of its typical host organisms. As a host-associated microbe, H. pylori F32 is primarily found in the gastric environment, where it may play a role in the complex interactions between the host's immune responses and the gastric microbiota. ↵↵The microaerophilic nature of H. pylori F32 implies that it requires low levels of oxygen for growth, which is consistent with its adaptation to the oxygen-limited conditions of the gastric niche. The filamentous shape of the bacterium may enhance its motility within the viscous gastric mucus, facilitating its colonization and survival in the gastrointestinal tract.↵↵Understanding the traits of H. pylori F32 provides insights into its potential roles in microbial communities within the host stomach. Its unique adaptation to the microaerophilic environment and ability to thrive at body temperature may influence local pH levels and contribute to the maintenance of gastric homeostasis or dysbiosis, highlighting the intricate balance of microbial life in the human gut." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 102608 NC_017366.1 Bac0001778 Helicobacter pylori J166 "Helicobacter pylori J166 is a Gram-negative bacterium characterized by its spirilla shape and arrangement in singles. This microbe is microaerophilic, thriving in environments with reduced oxygen levels, and has an optimal growth temperature of 37.0°C, which aligns with the typical conditions found within the human stomach. As a host-associated organism, H. pylori J166 occupies niche habitats within the gastric mucosa, where it is adapted to survive the harsh acidic conditions.↵↵The spiral morphology of H. pylori is believed to facilitate its motility through the viscous gastric mucus, allowing it to colonize the stomach lining effectively. The microaerophilic nature of this bacterium suggests a specialized adaptation to the low-oxygen microenvironments found in the human gastrointestinal tract. These traits may contribute to its persistence in the stomach and its potential role in influencing the host's gastric environment.↵↵Overall, the unique combination of its Gram-negative structure, microaerophilic lifestyle, and spirilla shape indicates a highly specialized organism that has evolved to exploit the specific conditions of its host-associated habitat. This adaptability highlights the intricate relationship between H. pylori J166 and its human host, emphasizing the importance of microbial adaptation in the context of gastrointestinal ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 102611 NZ_CP007603.1 Bac0001779 Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 "Helicobacter pylori NCTC 11637, also known by its other designations CCUG 17874, ATCC 43504, and JCM 12093, is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and arrangement as single cells. This organism thrives optimally at a temperature of 37.0°C, aligning with the typical physiological conditions of its host-associated habitat. ↵↵H. pylori is predominantly found in the gastrointestinal tract of humans and is well recognized for its ability to colonize the gastric mucosa. The microaerophilic nature of this bacterium suggests that it requires a low concentration of oxygen for growth, which is consistent with the oxygen levels found in the stomach environment. ↵↵The ability of H. pylori to maintain viability and activity in the acidic conditions of the stomach, alongside its spiral morphology, may contribute to its ability to penetrate the gastric mucus layer and adhere to epithelial cells. This unique adaptation highlights the complex interactions between H. pylori and its host, emphasizing its role in the microbial ecology of the human gut. Understanding these traits can provide insights into the physiological mechanisms underlying its resilience and potential implications for human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 102618 NZ_LS483488.1 Bac0001780 Proteus penneri "Proteus penneri is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, which obtains its energy through the consumption of organic compounds, and can be found in various body sites of humans, including the gut, urinary tract, and skin, and is a Facultative Anaerobe, capable of surviving in both aerobic and anaerobic environments. As a Gram-negative bacterium, Proteus penneri has a unique outer membrane composition that contributes to its pathogenicity. Its rod-shaped morphology allows for efficient movement and colonization of new environments. The mesophilic temperature preference of Proteus penneri enables it to thrive in a wide range of temperatures, making it a common inhabitant of human hosts. As a Chemoheterotroph, Proteus penneri relies on the breakdown of complex organic molecules to produce energy, which is typically generated through cellular respiration. This microbe can be found in various body sites, including the gut, where it plays a role in the breakdown of complex nutrients, and the urinary tract, where it can cause infections. Proteus penneri's ability to survive in both aerobic and anaerobic environments makes it a highly adaptable microbe. Proteus penneri has been implicated in a range of infections, including urinary tract infections and sepsis, and its ability to form biofilms makes it resistant to antibiotic treatment. The bacterium's swarming behavior on agar plates is a notable characteristic, where it migrates in a coordinated manner, creating a striking pattern." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus penneri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 102862 UGTQ00000000.1 Bac0001781 Frankia sp. ACN1ag Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. ACN1ag 102891 LJPA00000000.1 Bac0001782 Nostoc sp. PCC 7120 = FACHB-418 "Nostoc sp. PCC 7120, also designated as FACHB-418, is a filamentous, Gram-negative cyanobacterium that thrives in a variety of habitats and exhibits aerobic metabolic characteristics. This microbe is characterized by its filamentous morphology, which allows for the formation of extensive networks in aquatic environments, soil, and other terrestrial ecosystems. As a member of the cyanobacteria, Nostoc sp. PCC 7120 plays a significant role in nitrogen fixation, contributing to nutrient cycling in its ecosystems.↵↵The filamentous arrangement of its cells enables effective light capture and enhances its photosynthetic efficiency, vital for its survival in diverse habitats. This species can adapt to varying environmental conditions, demonstrating resilience and versatility, which are common traits among cyanobacteria. The aerobic nature of Nostoc sp. PCC 7120 suggests that it requires oxygen for its metabolic processes, which aligns with its photosynthetic capabilities.↵↵In addition to its ecological significance in nitrogen fixation and primary production, Nostoc sp. PCC 7120 is also noteworthy for its potential applications in biotechnology, including bioremediation and biofertilization. Its ability to thrive in multiple environments makes it a candidate for further study in sustainable agricultural practices, particularly in nitrogen-poor soils. Thus, the unique filamentous structure and metabolic versatility of Nostoc sp. PCC 7120 may offer insights into the ecological roles of cyanobacteria in biogeochemical cycles, highlighting their importance in maintaining ecosystem health." Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. PCC 7120 = FACHB-418 Negative Filamentous Yes 1 2 Aerobe Mesophilic Multiple Symbiotic Filaments 103690 NC_003272.1 Bac0001783 Saccharothrix texasensis str. DSM 44231 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix texasensis 29 mesophilic 103734 RJKM00000000.1 Bac0001784 Pseudomonas syringae pv. actinidiae "Pseudomonas syringae pv. actinidiae is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a heterotroph, utilizing organic compounds as its energy source, and it requires aerobic conditions for growth, indicating that it relies on oxygen for its metabolic processes. ↵↵Pseudomonas syringae pv. actinidiae is known to inhabit a variety of environments, which may contribute to its adaptability and survival in diverse ecological niches. The ability to thrive in multiple habitats suggests a potential for interactions with various host organisms and environmental factors, although specific associations remain to be explored.↵↵The aerobic nature of this bacterium highlights its reliance on oxidative metabolism, which may influence its ecological role in nutrient cycling and its interactions with other microbial communities. Understanding the ecological niche of Pseudomonas syringae pv. actinidiae may provide insights into its potential roles in plant-microbe interactions, particularly in relation to its growth and survival in environments rich in organic matter. Furthermore, the adaptability of this organism to various habitats underscores the importance of studying its ecological dynamics to better understand its contributions to microbial diversity and function in different ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 103796 RBQT00000000.1 Bac0001785 Pseudomonas syringae pv. actinidiae str. MAFF212054 "Pseudomonas syringae pv. actinidiae str. MAFF212054 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, indicating that it derives its energy from organic compounds. It has been observed in multiple habitats, suggesting a versatile ecological adaptability. As an aerobic microbe, it requires oxygen for its metabolic processes, which may influence its distribution in various environments.↵↵The ability of P. syringae pv. actinidiae str. MAFF212054 to thrive in diverse habitats highlights its potential role in various ecological niches, possibly including soil, plant surfaces, and other environments rich in organic matter. Its heterotrophic nature may also allow it to participate in nutrient cycling within its habitats, contributing to the decomposition of organic materials and the overall health of the ecosystems it inhabits. The specific adaptations of this strain to its environments warrant further investigation to better understand its ecological significance and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 103796 PESZ00000000.1 Bac0001786 Rhodococcus sp. AD45 "Rhodococcus sp. AD45 is a coccus-shaped bacterium, part of the diverse genus Rhodococcus, which is known for its versatile metabolic capabilities. This strain exhibits noteworthy characteristics that allow it to thrive in various environments, although specific habitat preferences are not detailed in the provided data. Rhodococcus species are often recognized for their ability to degrade a wide range of organic compounds, suggesting that Rhodococcus sp. AD45 may possess similar catabolic potential, contributing to bioremediation processes in contaminated environments. ↵↵The coccus morphology of Rhodococcus sp. AD45 may influence its ecological interactions and survival strategies, particularly in nutrient-limited or harsh conditions. The spherical shape can enhance its resistance to desiccation and may facilitate biofilm formation, which can further protect the microbial community within its environment. Additionally, the metabolic versatility typical of the Rhodococcus genus implies that Rhodococcus sp. AD45 could play a significant role in nutrient cycling and organic matter decomposition.↵↵In conclusion, while the specific ecological niche and functional capabilities of Rhodococcus sp. AD45 require further investigation, its coccus shape and presumed metabolic versatility position it as a potentially valuable player in environmental microbiology, particularly in applications related to bioremediation and organic compound degradation. Understanding its specific interactions and contributions within its ecosystem could provide insights into the broader ecological roles of similar bacteria." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. AD45 Cocci 103808 NZ_CM003191.1 Bac0001787 Nonomuraea turkmeniaca str. DSM 43926 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea turkmeniaca 29 mesophilic 103838 VCKY00000000.1 Bac0001788 Bordetella hinzii "Bordetella hinzii is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperature conditions, is classified as a chemoheterotroph, and is recognized as a microaerophile. This organism is typically found in the respiratory tracts, but it has been isolated from various sites within the body, including the lungs, trachea, and other mucosal surfaces.As a Gram-negative bacterium, Bordetella hinzii possesses a thin peptidoglycan layer surrounded by an outer membrane composed of lipopolysaccharides, which contributes to its pathogenicity and evasion of host immune responses. The rod shape of this microbe, characteristic of numerous members of the Bordetella genus, aids its motility and colonization within host tissues, allowing it to adapt to varying niches within the respiratory system.Being a mesophile, Bordetella hinzii optimally grows at moderate temperatures, which aligns with the typical body temperature of mammals, fostering its survival and reproduction in a warm-blooded host environment. As a chemoheterotroph, it derives energy and carbon from organic sources, utilizing nutrients within the host for growth. Its classification as a microaerophile indicates that B. hinzii requires lower levels of oxygen for growth compared to atmospheric conditions, which is significant in the context of its niche within the oxygen-rich respiratory tract. Bordetella hinzii’s role in animal health, particularly in domestic pets, has garnered attention, as it is sometimes associated with respiratory infections. Understanding this bacterium enhances our knowledge of host-pathogen interactions and contributes to developing effective treatments for infections it may cause in both animals and potentially humans. Additionally, it illustrates the complexities of microbial ecology in the respiratory microbiome, where numerous species coexist and interact." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella hinzii Negative Aerobe 103855 NZ_CP012076.1 Bac0001789 Pseudomonas syringae pv. theae "Pseudomonas syringae pv. theae is a Gram-negative, rod-shaped bacterium that occurs as single cells and exhibits heterotrophic metabolism, utilizing organic compounds as its energy source. This microbe is classified as an aerobic organism, requiring oxygen for growth and metabolic processes. ↵↵Pseudomonas syringae pv. theae is known to inhabit a variety of environments, reflecting its adaptability and potential for survival across diverse habitats. The presence of this bacterium in multiple ecological niches may contribute to its interactions with various plant hosts and microorganisms, although specific interactions are not detailed within the current knowledge base. ↵↵The ability of Pseudomonas syringae pv. theae to thrive in different environments suggests its role in microbial communities, where it may participate in nutrient cycling or influence the health of plant populations. This adaptability to varying habitats could be a key factor in its ecological significance, particularly in relation to its interactions with agricultural systems and the broader ecosystem functions it may support." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 103985 RBTL00000000.1 Bac0001790 Pseudomonas frederiksbergensis str. AS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 NZ_CP018320.1 Bac0001791 Pseudomonas frederiksbergensis str. ERDD5:01 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 NZ_CP017886.1 Bac0001792 Pseudomonas frederiksbergensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 MOBM00000000.1 Bac0001793 Pseudomonas frederiksbergensis str. 11-D3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 PUIN00000000.1 Bac0001794 Pseudomonas frederiksbergensis str. SI8 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 JQGJ00000000.2 Bac0001795 Acetobacter tropicalis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter tropicalis 104102 LHZT00000000.1 Bac0001796 Acetobacter tropicalis str. DmCS_006 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter tropicalis 104102 JOKM00000000.1 Bac0001797 Microbacterium foliorum Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium foliorum aerobic 29 mesophilic 104336 JYIU00000000.1 Bac0001798 Vibrio penaeicida str. CAIM 285 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio penaeicida 104609 RXYX00000000.1 Bac0001799 Nitrosococcus watsonii C-113 Nitrosococcus watsoni C-113.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus watsonii C-113 Negative 105559 NC_014317.1 Bac0001800 Dellaglioa algida Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Dellaglioa Dellaglioa algida 105612 OBKY00000000.1 Bac0001801 Frankia casuarinae str. Cg70.9 "Frankia casuarinae str. Cg70.9 is a Gram-positive, filamentous bacterium characterized by its unique cell arrangement in filaments. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. Frankia casuarinae str. Cg70.9 thrives in various habitats, suggesting a versatile adaptability to different environmental conditions. As an aerobic organism, it requires oxygen for its metabolic processes, highlighting its role in environments where oxygen is available.↵↵The filamentous structure of Frankia casuarinae str. Cg70.9 may contribute to its ecological functions, particularly in nitrogen fixation, as many species within the Frankia genus are known to form symbiotic relationships with actinorhizal plants. This capability allows them to convert atmospheric nitrogen into a form usable by plants, thereby enriching soil fertility and supporting plant growth in nutrient-poor environments. The presence of this strain in diverse habitats underscores its potential ecological significance, particularly in promoting plant health and contributing to the nitrogen cycle in various ecosystems." Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia casuarinae Positive Filamentous No 1 Aerobe Chemoorganotroph Mesophilic Multiple Symbiotic Filaments 106370 MSEA00000000.1 Bac0001802 Cupriavidus necator str. NH9 "Cupriavidus necator strain NH9 is a Gram-negative, rod-shaped bacterium recognized for its versatility as both a heterotroph and a chemoautotroph. This strain thrives optimally at a temperature of 30.0°C, indicating a potential preference for mesophilic environments. C. necator NH9 exhibits facultative aerobe characteristics, allowing it to adapt to varying oxygen conditions by utilizing oxygen for respiration when available while also being capable of anaerobic metabolism.↵↵The specialized habitat of this microbe suggests that it may occupy unique ecological niches, potentially involving biogeochemical cycling or interactions with other microbial communities. Its metabolic flexibility as an energy source provider could play a crucial role in nutrient cycling within its environment, enabling it to exploit diverse organic compounds while also engaging in autotrophic processes under certain conditions.↵↵This dual metabolic capability positions C. necator NH9 as a significant player in its ecological context, potentially aiding in the degradation of organic pollutants or contributing to the bioremediation of contaminated sites. Such traits underscore the importance of understanding the ecological roles of microbial strains like C. necator NH9 in maintaining ecosystem balance and promoting sustainability." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator Negative Rod Yes 1 2 Facultative aerobe 30 Heterotroph - Chemoautotroph Mesophilic Specialized Free living 106590 NZ_CP017759.1 Bac0001803 Cupriavidus necator str. CR12 "Cupriavidus necator strain CR12 is a Gram-negative, rod-shaped bacterium that exhibits both heterotrophic and chemoautotrophic metabolic capabilities, allowing it to utilize a variety of organic and inorganic compounds for energy. This strain thrives optimally at a temperature of 30.0°C, which suggests a preference for moderate thermal environments. C. necator CR12 is characterized as a facultative aerobe, indicating its ability to adapt to both aerobic and anaerobic conditions, thereby enhancing its survival in diverse habitats.↵↵Typically found in specialized environments, C. necator CR12 reflects the ecological versatility of the Cupriavidus genus. Its dual metabolic pathways may enable it to play a significant role in biogeochemical cycles, particularly in nutrient-rich niches where organic matter and inorganic substrates coexist. Additionally, the ability to switch between different energy sources could facilitate its survival under fluctuating environmental conditions, highlighting its potential ecological adaptability. This adaptability may also suggest a unique role in microbial communities, where it could contribute to nutrient cycling and energy flow in specialized habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator Negative Rod Yes 1 2 Facultative aerobe 30 Heterotroph - Chemoautotroph Mesophilic Specialized Free living 106590 QDHA00000000.1 Bac0001804 Ensifer adhaerens Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer adhaerens 106592 OCMG00000000.1 Bac0001805 Acinetobacter bereziniae str. HPC229 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bereziniae 106648 NZ_CM012324.1 Bac0001806 Acinetobacter bereziniae Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bereziniae 106648 SIRG00000000.1 Bac0001807 Acinetobacter genomosp. 15BJ Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter genomosp. 15BJ 106651 AQFL00000000.1 Bac0001808 Acinetobacter nosocomialis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter nosocomialis 106654 QCYF00000000.1 Bac0001809 Pseudoalteromonas ulvae str. TC14 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas ulvae 107327 MWPV00000000.1 Bac0001810 Buchnera aphidicola str. APS "Buchnera aphidicola str. APS is a Gram-negative bacterium characterized by its single-cell arrangement and its association with host organisms, specifically aphids. This endosymbiotic microbe is primarily found within the specialized cells of its aphid hosts, where it plays a crucial role in providing essential nutrients, particularly amino acids, that the host cannot synthesize on its own. ↵↵As a member of the enteric bacteria, B. aphidicola has adapted to a life closely tied to its aphid hosts, relying on their metabolic processes for survival and reproduction. This mutualistic relationship underscores the evolutionary significance of endosymbiosis in shaping the nutritional ecology of aphids. The bacterium's reliance on its host highlights the intricate interdependence that can evolve between symbionts and their hosts, illustrating how microbial associations can be pivotal in the adaptation and success of herbivorous insects in their ecological niches.↵↵Understanding the traits of B. aphidicola str. APS offers valuable insights into the dynamics of host-microbe interactions, which can inform broader ecological and evolutionary studies, particularly concerning symbiotic relationships and nutrient cycling within ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Buchnera Buchnera aphidicola Negative Mesophilic HostAssociated Symbiotic Singles 107806 NC_002253.1 Bac0001811 Gluconacetobacter entanii Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconacetobacter Gluconacetobacter entanii 108528 NKUF00000000.1 Bac0001812 Salmonella enterica subsp. enterica serovar Newport "Salmonella enterica subsp. enterica serovar Newport is a Gram-negative bacterium characterized by its spirilla shape and its tendency to occur in chains or as single cells. This serovar thrives optimally at 37.0°C, which coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a chemoorganotroph, S. enterica serovar Newport derives its energy from organic compounds, further emphasizing its reliance on biological environments for sustenance. Additionally, this microbe is microaerophilic, meaning it requires low levels of oxygen for growth, which is often found in the intestinal tracts of various hosts.↵↵The ecological niche of S. enterica serovar Newport is primarily associated with animals, particularly in the gastrointestinal systems of warm-blooded species. This adaptation may facilitate its survival and proliferation in host environments, where it can exploit organic matter and low oxygen conditions. The ability to form chains may also enhance its survival in nutrient-rich environments, allowing for greater stability and resource acquisition. Understanding these traits is essential for elucidating the ecological roles of S. enterica serovar Newport in both health and disease contexts, as well as its interactions with various hosts in the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 108619 SMPN00000000.1 Bac0001813 Acinetobacter ursingii str. blaTEM-116 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter ursingii 108980 PTPV00000000.1 Bac0001814 Acinetobacter schindleri "Acinetobacter schindleri is a Gram-negative bacterium primarily found in the rhizomes of various plant species. This microbe is part of the diverse Acinetobacter genus, which is known for its environmental resilience and ability to thrive in varied habitats, although A. schindleri's specific ecological role remains to be fully understood. The presence of A. schindleri in rhizomes suggests a potential interaction with plant root systems, possibly contributing to nutrient cycling or plant-microbe interactions. Given its habitat, A. schindleri may play a role in the rhizosphere, influencing plant health and growth through mechanisms that are yet to be explored.↵↵The isolation of Acinetobacter species from soil and plant-associated environments highlights the significance of this group in terrestrial ecosystems, particularly in the context of their potential contributions to soil health. Further research into A. schindleri may elucidate its functional capabilities and interactions within plant ecosystems, underscoring the importance of understanding microbial diversity in relation to plant biology and ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter schindleri negative rhizomes 108981 NZ_CP025618.2 Bac0001815 Rickettsia monacensis str. IrR/Munich Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia monacensis 109232 NZ_LN794217.1 Bac0001816 Bisgaardia hudsonensis str. DSM 28231 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Bisgaardia Bisgaardia hudsonensis microaerophile 109472 SLXI00000000.1 Bac0001817 Nocardioides sp. CF8 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. CF8 110319 ASEP00000000.1 Bac0001818 Mycobacterium heckeshornense str. CTRI-134 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium heckeshornense 110505 MPJF00000000.2 Bac0001819 Synechococcus sp. CC9605 "Marine unicellular cyanobacteria of the synechococcus group occupy an important position at the base of the marine food chain. They are abundant in the world's oceans and as a result are one of the most numerous genomes on earth. They have the ability to acquire major nutrients and trace metals from the submicromolar concentrations found in the oligotrophic open seas and their light-harvesting apparatus is uniquely adapted to the spectral quality of light in the ocean.A third of the open ocean isolates of synechococcus possess a unique type of swimming motility not seen in any other type of microorganism, they propel themselves through seawater at speeds of up to 25 mm/sec despite their lack of external propelling devices. They do not use their motility to respond to light gradients, but instead to respond to extremely small gradients of nitrogenous compounds.Synechococcus sp. strain WH8102 is a motile strain that can be grown in both natural and artificial seawater liquid media as well as on plates and is amenable to biochemical and genetic manipulation. The availability of the complete sequence of the genome of synechococcus WH8102 will provide insights not only into the unique adaptations of this cyanobacterial group to the marine environment, including mechanisms of nutrient and metal transport, chemotaxis, motility, and viral interactions but also into what factors might be ultimately important in controlling primary productivity in the oceans.Marine synechococcus spp. coexist with the other abundant unicellular marine cyanobacterial group, prochlorococcus . A major difference between the synechococcus and prochlorococcus groups lies in their light-harvesting apparatus, with synechococcus utilizing chlorophyll A, and prochlorococcus relying on divinyl chlorophylls A and B. A comparative analysis of their genomes should allow insights not only into the evolution of light-harvesting complexes, but also into cyanobacterial diversification in the oceans, including adaptations to different marine niches.Marine unicellular cyanobacteria are responsible for an estimated 20-40% of chlorophyll biomass and carbon fixation in the oceans.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CC9605 CC9605 Negative Cocci No 1 2 Facultative Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Singles No 110662 NC_007516.1 Bac0001820 Actinomyces radicidentis Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces radicidentis anaerobic / microaerophile 111015 NZ_CP014228.1 Bac0001821 Porphyromonas gulae str. COT-052 OH1451 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gulae gingival crevicular fluid; oral cavity; subgingival plaque 111105 JRAI00000000.1 Bac0001822 Stanieria cyanosphaera PCC 7437 Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Stanieria Stanieria cyanosphaera 111780 NC_019766.1 Bac0001823 Chryseobacterium joostei Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium joostei 112234 NZ_CP033927.1 Bac0001824 Sporomusa malonica Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporomusa Sporomusa malonica anaerobic 112901 FWXI00000000.1 Bac0001825 Enterococcus villorum "Enterococcus villorum is a Gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, urinary tract, and skin, across all possible species. As a Facultative Anaerobe, Enterococcus villorum can survive and grow in both aerobic and anaerobic environments, making it a highly adaptable microbe. The Gram-positive characteristic of Enterococcus villorum indicates the presence of a thick peptidoglycan layer in its cell wall, providing resistance to certain antibiotics and environmental stresses. Its cocci shape allows for efficient attachment to surfaces and formation of biofilms, which can lead to persistent infections. As a mesophilic microbe, Enterococcus villorum grows optimally in temperatures between 20-45°C, making it well-suited for human hosts. As a Chemoheterotroph, Enterococcus villorum relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth and survival. This metabolic versatility enables it to thrive in diverse environments, from the human gut to soil and water. The ability to inhabit various body sites and withstand different oxygen levels makes Enterococcus villorum a potential opportunistic pathogen, causing infections in immunocompromised individuals. Enterococcus villorum has been isolated from fermented foods, such as cheese and sausages, where it contributes to the development of flavor and texture. Its presence in these products highlights the microbe's ability to survive and grow in environments with high salt concentrations and low water activity, making it a valuable species for food fermentation and preservation." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus villorum Positive Cocci No 1 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 112904 MJEA00000000.1 Bac0001826 Streptococcus australis "Streptococcus australis is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the oral cavity, respiratory tract, and gastrointestinal tract, across different species. As a Facultative Anaerobe, Streptococcus australis can survive in both aerobic and anaerobic environments, making it a versatile microorganism.The Gram-positive characteristic of Streptococcus australis is due to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining procedure. Its spherical shape, also known as cocci, allows it to adhere to surfaces and form colonies. As a mesophilic microbe, Streptococcus australis grows optimally in temperatures between 20-45°C, making it well-suited for the human body's normal temperature range. As a Chemoheterotroph, Streptococcus australis relies on external sources of energy and organic compounds, such as carbohydrates and amino acids, to sustain its metabolic processes. Its ability to inhabit various body sites is likely due to its capacity to form biofilms and adhere to epithelial cells. The Facultative Anaerobe nature of Streptococcus australis enables it to adapt to different oxygen levels, allowing it to thrive in a range of environments, from the oxygen-rich oral cavity to the anaerobic gut. Streptococcus australis has been implicated in various infections, including endocarditis and bacteremia, particularly in individuals with compromised immune systems. Its presence in the oral cavity has also been linked to periodontal disease and dental caries. The microbe's ability to produce virulence factors, such as adhesins and toxins, contributes to its pathogenic potential." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus australis Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 113107 QFBE00000000.1 Bac0001827 Bathymodiolus platifrons methanotrophic gill symbiont Pseudomonadati Pseudomonadota Gammaproteobacteria Bathymodiolus platifrons methanotrophic gill symbiont 113268 BDMN00000000.1 Bac0001828 Mogibacterium diversum Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Mogibacterium Mogibacterium diversum 114527 NZ_CP027228.1 Bac0001829 Bradyrhizobium sp. ORS 278 str. ORS278 "Bradyrhizobium sp. ORS 278 str. ORS278 is a Gram-negative, rod-shaped bacterium that exhibits photosynthetic capabilities, enabling it to harness light energy for growth and metabolism. As an aerobic organism, it requires oxygen for its respiratory processes, which is consistent with its habitat preference of being host-associated. This positioning suggests a symbiotic relationship with its host, likely facilitating nutrient exchange and contributing to the overall health of the associated biological community.↵↵The photosynthetic nature of Bradyrhizobium sp. ORS 278 str. ORS278 positions it uniquely among members of its genus, as many related species primarily rely on heterotrophic metabolism. This trait may confer advantages in specific ecological niches where light availability is sufficient, allowing for the production of organic compounds that can be utilized by both the bacterium and its host. Furthermore, the interplay between its photosynthetic ability and aerobic metabolism could enhance its adaptability in varying environmental conditions, underscoring the potential for diverse interactions within its ecosystem. Understanding the precise ecological roles of such organisms is crucial, as they may contribute to biogeochemical cycles and the sustainability of their habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. ORS 278 Negative Rod Yes 2 Aerobe Photosynthetic Mesophilic HostAssociated Symbiotic 114615 NC_009445.1 Bac0001830 Mycoplasmopsis maculosa Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis maculosa 114885 NZ_LR215038.1 Bac0001831 Amycolatopsis sacchari Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sacchari 29 mesophilic non-spore-forming 115433 FORP00000000.1 Bac0001832 Halomonas sulfidaeris str. SST4 "Halomonas sulfidaeris str. SST4 is a Gram-negative, rod-shaped bacterium that demonstrates facultative aerobic and anaerobic metabolic capabilities. This versatile microbe thrives optimally at a temperature of 29.0°C, suggesting a preference for moderately warm environments. Notably, Halomonas sulfidaeris str. SST4 does not form spores, which may indicate a strategy for survival and adaptation in its natural habitats that does not rely on sporulation. ↵↵The facultative nature of its oxygen requirement allows Halomonas sulfidaeris str. SST4 to exploit a range of ecological niches, potentially enhancing its resilience in fluctuating environments where oxygen levels vary significantly. This adaptability may be particularly advantageous in saline or sulfide-rich habitats, where competition and resource availability can be challenging. Understanding the physiological traits of Halomonas sulfidaeris str. SST4 not only contributes to the broader knowledge of microbial diversity in extreme environments but also underscores the potential applications of such organisms in biotechnological processes, including bioremediation and bioenergy production." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella sulfidaeris Gram-negative rod facultative aerobe/anaerobe 29 mesophilic non-spore-forming 115553 QNTU00000000.1 Bac0001833 Chlamydia pneumoniae CWL029 "Chlamydia pneumoniae CWL029 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C. This organism is primarily host-associated, indicating a dependence on living hosts for its survival and replication. ↵↵As a member of the Chlamydiaceae family, Chlamydia pneumoniae CWL029 is known for its role in respiratory infections in humans, although specific pathogenicity traits are not detailed here. The bacterium’s rod shape and Gram-negative classification suggest a complex cell wall structure, characteristic of this group, which may influence its interactions with host immune responses.↵↵Chlamydia pneumoniae CWL029 is typically found in environments that are conducive to its life cycle, which includes both an extracellular infectious form and an intracellular replicative form. The reliance on a host-associated habitat underscores the bacterium's adaptations to evade host defenses and establish infection in respiratory tissues. ↵↵In summary, the optimal growth temperature and host-associated habitat of Chlamydia pneumoniae CWL029 highlight its adaptation to survive within the human body, particularly in the upper respiratory tract, where it may contribute to respiratory health dynamics. Importantly, this organism exemplifies the intricate relationships between microbial life and host organisms, emphasizing the need for further research into its ecological role and interactions within human populations." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia pneumoniae Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 115713 NC_000922.1 Bac0001834 Trichlorobacter thiogenes Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter thiogenes 115783 FUWR00000000.1 Bac0001835 Bradyrhizobium sp. ORS 285 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. ORS 285 115808 NZ_LT859959.1 Bac0001836 Niallia nealsonii str. FO-92 "Niallia nealsonii strain FO-92 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This organism can thrive in both aerobic and anaerobic environments, suggesting a versatile metabolic capability that allows it to adapt to varying oxygen levels. The Gram-positive nature of Niallia nealsonii str. FO-92 indicates a thick peptidoglycan layer in its cell wall, which is typical of this group and may contribute to its resilience in diverse habitats.↵↵Facultative anaerobes like Niallia nealsonii str. FO-92 are known for their ability to switch between aerobic respiration and fermentation, depending on the availability of oxygen. This metabolic flexibility is an advantageous trait that enables the bacterium to occupy niches where oxygen may fluctuate, thus enhancing its survival and competitive success in various environments. This adaptability is particularly significant in environments where organic matter decomposition occurs, as it may play a role in nutrient cycling.↵↵The presence of Niallia nealsonii str. FO-92 in such environments could suggest its involvement in the breakdown of complex organic materials, thereby contributing to the overall microbial community dynamics and potentially influencing the biogeochemical processes within its habitat. Understanding the metabolic capabilities and ecological roles of this strain may provide insights into its contributions to microbial ecosystems and nutrient cycling processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Niallia Niallia nealsonii Positive Rod Facultative anaerobe 115979 PISE00000000.1 Bac0001837 Salmonella enterica subsp. enterica serovar Montevideo "Salmonella enterica subsp. enterica serovar Montevideo is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and ability to exist in both single cells and chains. This organism is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which is consistent with its habitat that is primarily host-associated. The optimal growth temperature for S. enterica serovar Montevideo is 37.0°C, aligning with the body temperature of warm-blooded hosts, suggesting a potential adaptation to thrive in such environments.↵↵The microaerophilic nature of this bacterium implies that it requires reduced levels of oxygen for optimal growth, a trait that may influence its survival and proliferation within the host's gastrointestinal tract, where oxygen levels are typically lower than in the environment. This adaptation may provide S. enterica serovar Montevideo with a competitive advantage in colonizing host tissues and evading immune responses.↵↵Understanding the ecological role of S. enterica serovar Montevideo in its host-associated habitat could reveal insights into its interactions with the host microbiome and its potential implications for health and disease. The ability to form chains may also play a role in its ecological dynamics, potentially affecting its transmissibility and persistence within host populations." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 115981 VCIS00000000.1 Bac0001838 Pseudocoprococcus catus "Pseudocoprococcus catus is a Gram-positive, nonsporulating coccus that is part of the intestinal microflora of animals and functions as a chemoheterotroph. This anaerobic microorganism thrives in the oxygen-depleted environments of the gastrointestinal tract, where it plays a role in the complex ecosystem of gut microbiota. ↵↵As a member of the intestinal community, Pseudocoprococcus catus contributes to the fermentation of dietary substrates, which may influence nutrient absorption and overall gut health. The metabolic processes of this microbe likely interact with other microbial populations, highlighting its potential role in maintaining microbial diversity and stability within the gut environment. ↵↵Understanding the specific contributions of Pseudocoprococcus catus to the host's intestinal ecosystem could provide insights into its importance in digestion and the maintenance of gut homeostasis, emphasizing the intricate relationships between host and microbe in the context of health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudocoprococcus Pseudocoprococcus catus Positive Cocci No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 116085 QVEP00000000.1 Bac0001839 Methanobacterium congolense Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium congolense 118062 NZ_LT607757.1 Bac0001840 Pleurocapsa sp. PCC 7327 Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Pleurocapsaceae Pleurocapsa Pleurocapsa sp. PCC 7327 118163 NC_019689.1 Bac0001841 Pseudomonas sp. B10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. B10 118613 NZ_LT707063.1 Bac0001842 Modicisalibacter muralis Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Modicisalibacter Modicisalibacter muralis 119000 FNGI00000000.1 Bac0001843 Aerococcus sanguinicola "Aerococcus sanguinicola is a Gram-positive, spherical bacterium that presents as a microaerophile, requiring reduced oxygen levels for optimal growth. This organism is notable for its non-spore-forming nature, which distinguishes it from many other bacterial species that utilize sporulation as a survival strategy. ↵↵The spherical morphology of A. sanguinicola is representative of the genus Aerococcus, which typically exhibits a coccoid form. The microaerophilic requirement indicates that while it thrives in environments with lower levels of oxygen, it is not strictly anaerobic; thus, it may be found in niches where oxygen is present but limited. This characteristic may influence its ecological distribution, potentially allowing it to inhabit environments such as the human microbiome or other oxygen-restricted niches.↵↵Given its traits, A. sanguinicola may play a role in various biological processes, particularly in environments where oxygen concentrations fluctuate. Understanding the growth conditions and characteristics of this microbe could provide insights into its ecological roles, including its interactions within microbial communities and its potential contributions to biogeochemical cycles in its natural habitats. The non-spore-forming characteristic may also suggest a reliance on stable environments for survival, making it an interesting subject for further research into its ecological adaptability and resilience." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus sanguinicola Gram-positive sphere microaerophile non-spore-forming 119206 PKGY00000000.1 Bac0001844 Cupriavidus metallidurans "Cupriavidus metallidurans is a Gram-negative, rod-shaped bacterium characterized by its singular cell arrangement and facultative anaerobic metabolism. This microbe thrives optimally at a temperature of 30.0°C, indicating a preference for mesophilic environments. C. metallidurans is known to inhabit specialized habitats, suggesting its adaptation to particular ecological niches that may provide unique substrates or conditions for growth.↵↵The facultative nature of its oxygen requirement allows C. metallidurans to switch between aerobic and anaerobic respiration, which may confer a survival advantage in fluctuating environmental conditions. This versatility in metabolic pathways is particularly relevant in its natural habitats, where oxygen availability can vary significantly.↵↵C. metallidurans’s specialized habitat preference may involve environments enriched with heavy metals, as this organism is recognized for its ability to tolerate and potentially bioremediate toxic metal pollutants. The ability to survive in such challenging conditions highlights its ecological role in biogeochemical cycles, particularly in the detoxification processes associated with heavy metal contamination. Thus, C. metallidurans serves not only as a model organism for studying metal tolerance mechanisms but also as a potential candidate for biotechnological applications aimed at environmental remediation. Its unique adaptations underscore the intricate relationships between microbial life and its environment, particularly in the context of pollution and recovery processes." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans Negative Rod Yes Facultative 30 Mesophilic Specialized Free living Singles 119219 LQAD00000000.1 Bac0001845 Streptococcus dysgalactiae subsp. equisimilis "Streptococcus dysgalactiae subsp. equisimilis is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains or exist as single cells. This subspecies is nonsporulating and exhibits facultative anaerobic respiration, allowing it to thrive in diverse environments, primarily associated with host organisms. ↵↵S. dysgalactiae subsp. equisimilis is known to inhabit various hosts, suggesting a degree of adaptability in its ecological niche. Its facultative nature implies that it can utilize both aerobic and anaerobic metabolic pathways, which may confer a competitive advantage in fluctuating environments, particularly within host-associated habitats. ↵↵The combination of these traits underscores the organism's potential role in host microbiomes, where it may interact with other microbial species and influence host health. Understanding the specific ecological relationships and functions of S. dysgalactiae subsp. equisimilis within its host-associated habitats could provide valuable insights into its biological significance and potential impacts on host physiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Chains-Singles Nonsporulating 119602 NZ_LR134316.1 Bac0001846 Francisella tularensis subsp. holarctica str. 08T0073 "Francisella tularensis subsp. holarctica strain 08T0073 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is an aerobic organism, indicating its requirement for oxygen to sustain metabolic processes. It is found in aquatic habitats, suggesting a potential ecological role in freshwater or marine environments.↵↵As a member of the genus Francisella, this subspecies is notable for its unique adaptations that allow it to thrive in specific ecological niches. The aquatic habitat may provide essential resources for its survival and growth, influencing the dynamics of microbial communities in these ecosystems. Furthermore, the aerobic nature of strain 08T0073 suggests that it may play a role in biogeochemical cycles, particularly those involving carbon and nitrogen, by participating in the degradation of organic materials or influencing oxygen levels in its habitat.↵↵Given the ecological context of F. tularensis subsp. holarctica, further studies could elucidate its interactions with other microorganisms and its contributions to aquatic ecosystems. Understanding these relationships may provide insights into the complex dynamics of microbial life in freshwater environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 119857 MRZT00000000.1 Bac0001847 Propionibacterium australiense Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium australiense anaerobic 119981 UNQJ00000000.1 Bac0001848 Sphingobium cloacae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium cloacae 120107 NZ_AP017661.1 Bac0001849 Sphingobium xenophagum str. C1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium xenophagum 121428 NZ_CP022748.1 Bac0001850 Sphingobium xenophagum Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium xenophagum 121428 BBQY00000000.1 Bac0001851 Pannonibacter phragmitetus str. 31801 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Pannonibacter Pannonibacter phragmitetus 121719 NZ_CP013068.1 Bac0001852 Pseudomonas psychrophila Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas psychrophila aerobic 122355 JYKZ00000000.1 Bac0001853 Neisseria meningitidis MC58 "Neisseria meningitidis MC58 is a gram-negative, diplococcal-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites of humans, including the respiratory tract, bloodstream, and cerebrospinal fluid, and is also capable of inhabiting other species such as non-human primates and other mammals, and is an obligate aerobe. As a gram-negative microbe, N. meningitidis MC58 has a thin peptidoglycan layer in its cell wall, which contributes to its susceptibility to certain antibiotics. Its diplococcal shape allows it to adhere to and invade host cells, facilitating its pathogenicity. The mesophilic temperature preference of N. meningitidis MC58 enables it to grow optimally at human body temperature, around 37°C. As a chemoheterotroph, this microbe relies on external sources of organic compounds for energy and carbon, which it obtains by breaking down complex molecules in its host. N. meningitidis MC58 can inhabit various body sites, including the respiratory tract, where it can colonize and potentially cause disease. The obligate aerobe nature of this microbe requires it to have oxygen present to grow, which is typically found in the human respiratory tract. The genome sequence of N. meningitidis MC58 has been fully elucidated, providing valuable insights into its pathogenic mechanisms and virulence factors, and its ability to cause meningitis and septicemia has led to the development of effective vaccines against this microbe, which have significantly reduced the incidence of invasive meningococcal disease." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis MC58 Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Homo sapiens Pairs Nonsporulating Yes 122586 NC_003112.2 Bac0001854 Persephonella marina EX-H1 "Persephonella marina (strain DSM 14350 / EX-H1) is a chemolithotrophic, thermophilic hydrogen-oxidizing bacterium isolated from a deep sea hydrothermal vent on the East Pacific Rise. P. marina has one chromosome and one megaplasmid. It is able to fix CO2 using the A-type reductive tricarboxylic acid (TCA) cycle. P. marina possesses genes to catalyze the oxidation of sulfide to elemental sulfur and is an autotrophic nitrate reducer. (EBI Integr8)" Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Persephonella Persephonella marina EX-H1 Negative Rod No 1 2 Microaerophilic 73 Chemolithoautotroph Thermophilic Aquatic Free living Nonsporulating No 123214 NC_012439.1 Bac0001855 Frederiksenia canicola str. DSM 25797 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Frederiksenia Frederiksenia canicola aerobic 123824 RKQT00000000.1 Bac0001856 Bordetella trematum "Bordetella trematum is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 37.0°C. This bacterium is a member of the genus Bordetella, which is known for its role in various ecological niches, particularly those involving host interactions. ↵↵The Gram-negative nature of B. trematum suggests a complex cell wall structure, which includes an outer membrane containing lipopolysaccharides. This characteristic may influence its interactions with other microorganisms and host organisms, potentially affecting its survival and ecological dynamics. The non-spore-forming trait indicates that B. trematum relies on active growth rather than dormancy for survival, which could limit its resilience in harsh environments but may enhance its adaptability in stable habitats where nutrients are readily available.↵↵The optimal growth temperature of 37.0°C aligns with the typical temperatures found in mammalian hosts, suggesting a possible association with warm-blooded animals. Further research into its specific ecological role and interactions within its environment could reveal important insights into its function and potential impacts on microbiomes, particularly in contexts where it may coexist with other microbial populations. Understanding these dynamics may also shed light on the evolutionary adaptations of B. trematum within its ecological niche." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella trematum Gram-negative rod motile aerobic 37 mesophilic non-spore-forming 123899 NZ_LT546646.1 Bac0001857 Psychrobacillus psychrodurans Bacillati Bacillota Bacilli Caryophanales Bacillaceae Psychrobacillus Psychrobacillus psychrodurans aerobic 126157 FOUN00000000.1 Bac0001858 Providencia alcalifaciens "Providencia alcalifaciens is a Gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, typically thriving in the range of 30°C to 37°C. It is classified as a chemoheterotroph, utilizing organic compounds for energy and carbon. This organism is facultatively anaerobic, meaning it can grow in both the presence and absence of oxygen, allowing it to adapt to various environments. As a member of the Enterobacteriaceae family, *Providencia alcalifaciens* is commonly isolated from human gastrointestinal and urogenital tracts, as well as from environmental sources such as soil and water. The bacterium is capable of fermentation and can produce a range of metabolites, including short-chain fatty acids, which contribute to its ecological adaptability. Its biochemical features include the ability to hydrolyze urea and ferment mannitol, making it identifiable in laboratory settings. This microbe is widely associated with urinary tract infections, particularly in individuals with underlying health conditions, such as diabetes or catheterization. In addition to its clinical significance, *Providencia alcalifaciens* plays a role in the nitrogen cycle, contributing to the conversion of organic nitrogen into ammonia, making it beneficial for soil fertility. Its adaptability to various oxygen levels and its metabolic versatility allows *Providencia alcalifaciens* to thrive in diverse environments, from clinical settings to natural habitats. Moreover, it exhibits resistance to multiple antibiotics, posing challenges in treatment options for infections it may cause, highlighting the importance of understanding its biology and ecology in medical and environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia alcalifaciens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 126385 NZ_CP023536.1 Bac0001859 Thermotoga sp. RQ7 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. RQ7 126738 NZ_CP007633.1 Bac0001860 Scytonema hofmannii PCC 7110 Bacillati Cyanobacteriota Cyanophyceae Nostocales Scytonemataceae Scytonema Scytonema hofmannii 128403 ANNX00000000.2 Bac0001861 Stenotrophomonas acidaminiphila Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas acidaminiphila 128780 QFPQ00000000.1 Bac0001862 Pseudomonas coronafaciens pv. atropurpurea Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 129135 LJPS00000000.1 Bac0001863 Pseudomonas syringae pv. broussonetiae "Pseudomonas syringae pv. broussonetiae is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a heterotroph, meaning it derives its energy from organic compounds, and it is an aerobic organism, requiring oxygen for its metabolic processes. The bacterium has been found in diverse habitats, indicating its ecological versatility and potential adaptability to different environmental conditions.↵↵The ability of Pseudomonas syringae pv. broussonetiae to thrive in multiple habitats suggests its role in various ecological niches, where it may participate in the decomposition of organic matter or interact with other microbial communities. Its aerobic nature further implies that it may play a significant role in oxygen-rich environments, contributing to nutrient cycling and possibly influencing the dynamics of microbial communities. Understanding this bacterium's ecological interactions may provide insights into its functions within its habitats, especially in relation to organic matter degradation and nutrient availability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 129136 LJPV00000000.1 Bac0001864 Pseudomonas amygdali pv. eriobotryae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 129137 LJQI00000000.1 Bac0001865 Pseudomonas amygdali pv. morsprunorum Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 129138 RBPP00000000.1 Bac0001866 Pseudomonas syringae pv. tagetis "Pseudomonas syringae pv. tagetis is a Gram-negative, rod-shaped bacterium that occurs as single cells and is classified as a heterotrophic aerobe. This microbe thrives in diverse habitats, which may contribute to its ecological versatility. The aerobic nature of P. syringae pv. tagetis suggests it relies on oxygen for its metabolic processes, which is typical of many bacteria within the Pseudomonas genus. ↵↵The ability of this bacterium to utilize various organic compounds as energy sources enables it to occupy a range of ecological niches, potentially influencing local microbial communities. Its adaptability to different environments may also facilitate interactions with plants and other organisms in its habitat. Understanding the ecological roles of P. syringae pv. tagetis can provide insights into its contributions to nutrient cycling and its potential interactions with other microbial species." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7 Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 129140 RBQC00000000.1 Bac0001867 Xanthomonas oryzae pv. oryzicola str. CFBP7342 "Xanthomonas oryzae pv. oryzicola str. CFBP7342 is a Gram-negative, rod-shaped bacterium that is classified within the Xanthomonadaceae family. This microbe is primarily associated with host organisms, indicating its specialization to thrive in environments closely linked to its biological hosts. It exhibits an aerobic metabolism, necessitating oxygen for its growth and survival, which is characteristic of many bacteria within its genus.↵↵The rod shape of X. oryzae pv. oryzicola str. CFBP7342 may play a role in its motility and colonization abilities, potentially facilitating its interactions with plant tissues. The association with host organisms suggests that this bacterium may have evolved specific mechanisms to adapt to the plant environment, which could include the secretion of virulence factors or the establishment of symbiotic relationships.↵↵The ecological significance of Xanthomonas oryzae pv. oryzicola str. CFBP7342 lies in its potential role in influencing plant health and agriculture, as its habitat is intimately linked to host plants. Understanding the traits of this bacterium could contribute to elucidating its interactions within the plant microbiome and its impact on agricultural systems, particularly in rice cultivation. Further research into its metabolic pathways and host interactions may reveal insights into its ecological niche and potential management strategies in agricultural practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living 129394 NZ_CP007221.1 Bac0001868 Amycolatopsis keratiniphila str. HCCB10007 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis keratiniphila 129921 NC_023497.1 Bac0001869 Amycolatopsis keratiniphila Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis keratiniphila 129921 NZ_LT629789.1 Bac0001870 Bacillus thuringiensis serovar higo "Bacillus thuringiensis serovar higo is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to survive in various environmental conditions. This bacterium is primarily host-associated, indicating a relationship with particular host organisms, which may influence its ecological niche and potential applications. As a facultative anaerobe, B. thuringiensis serovar higo can thrive in both aerobic and anaerobic environments, providing it with versatility in different habitats. ↵↵The sporulation capability of this microbe is a key trait, enabling it to endure unfavorable conditions for extended periods. This characteristic makes B. thuringiensis serovar higo particularly interesting in the context of biological control, as its spores can remain viable in environments where other microorganisms may not survive. Understanding its ecological interactions and physiological traits is essential for exploring its role within host systems and potential applications in agriculture or environmental management. The host-associated lifestyle suggests that B. thuringiensis serovar higo may play a significant role in the dynamics of microbiomes associated with its hosts, contributing to microbial diversity and potentially influencing host health and resistance to pathogens." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 132266 MOOK00000000.1 Bac0001871 Streptomyces rimosus subsp. rimosus "Streptomyces rimosus subsp. rimosus is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its role in natural antibiotic production. This subspecies is primarily found in soil environments, contributing to the complex microbial communities that inhabit terrestrial ecosystems. As a member of the Actinobacteria phylum, S. rimosus subsp. rimosus exhibits filamentous growth, forming a characteristic mycelium that is typical of its genus.↵↵The ability of S. rimosus subsp. rimosus to thrive in soil habitats suggests that it plays a significant role in nutrient cycling and soil health. This organism is particularly noted for its production of the antibiotic streptomycin, which has been pivotal in the treatment of bacterial infections, particularly those caused by Mycobacterium tuberculosis. The ecological interactions of S. rimosus subsp. rimosus with other soil microorganisms could influence the dynamics of microbial populations and the overall functionality of soil ecosystems.↵↵Given its ecological niche, S. rimosus subsp. rimosus illustrates the importance of soil-dwelling microbes in biotechnological applications, particularly in the development of pharmaceuticals derived from natural products. Its presence in soil not only underscores the diversity of microbial life but also highlights the potential for discovering novel bioactive compounds that can address medical challenges." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rimosus Positive soil 132474 LGCQ00000000.1 Bac0001872 Pseudomonas kilonensis str. 1855-344 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas ogarae 132476 JZXC00000000.1 Bac0001873 Rhodococcus jostii "Rhodococcus jostii is a Gram-positive microbe characterized by its cocci shape and filamentous cell arrangement. This aerobic organism thrives optimally at a temperature of 30.0°C, making it well-suited for terrestrial habitats. As a member of the Rhodococcus genus, R. jostii exhibits notable metabolic versatility, which may contribute to its ability to degrade various organic compounds in soil environments. ↵↵The filamentous growth form of R. jostii could enhance its surface area for nutrient absorption and may facilitate interactions with other microorganisms in its terrestrial habitat. This characteristic growth pattern, combined with its aerobic nature, suggests a potential role in biogeochemical cycling, particularly in the breakdown of complex organic matter. ↵↵In summary, R. jostii exemplifies the adaptive strategies of soil-dwelling microorganisms, potentially influencing nutrient dynamics and organic matter turnover in terrestrial ecosystems. Its filamentous structure may also play a role in forming microcolonies that enhance its ecological interactions within the soil microbiome." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus jostii Positive Cocci No Aerobe 30 Mesophilic Terrestrial Free living Filaments 132919 FNTL00000000.1 Bac0001874 Hydrogenothermus marinus str. VM1 Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Hydrogenothermus Hydrogenothermus marinus 133270 REFO00000000.1 Bac0001875 Nitrosomonas sp. Nm51 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Nm51 133720 FOGH00000000.1 Bac0001876 Paraburkholderia caledonica Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caledonica 134536 NZ_CP024906.1 Bac0001877 Paraburkholderia fungorum Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia fungorum aerobic 134537 NBSN00000000.1 Bac0001878 Paraburkholderia insulsa str. LMG 28183 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia fungorum 134537 PVZM00000000.1 Bac0001879 Nocardia fluminea str. dsm 44489 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia fluminea 29 mesophilic 134984 PJMW00000000.1 Bac0001880 Francisella tularensis subsp. mediasiatica "Francisella tularensis subsp. mediasiatica is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This subspecies is primarily associated with aquatic habitats, indicating a niche adaptation that may influence its ecological interactions. As an aerobic organism, it relies on oxygen for its metabolic processes, which may shape its distribution and survival strategies in various aquatic environments.↵↵The structural characteristics of F. tularensis subsp. mediasiatica, including its Gram-negative cell wall composition, suggest potential implications for its resistance to certain antimicrobial agents and environmental stresses. Its solitary cellular arrangement further distinguishes it from other potential bacterial clusters found in similar habitats. ↵↵Research into the ecological roles of F. tularensis subsp. mediasiatica could provide valuable insights into the dynamics of aquatic microbiomes, particularly in understanding how this bacterium interacts with other microorganisms and its environment. This knowledge may contribute to broader ecological assessments regarding microbial diversity and the functioning of aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 135248 SGWN00000000.1 Bac0001881 Nocardia cyriacigeorgica str. DSM 44484 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia cyriacigeorgica 135487 VBUR00000000.1 Bac0001882 Nocardia cyriacigeorgica str. EML 446 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia cyriacigeorgica 135487 VBUT00000000.1 Bac0001883 Nocardia cyriacigeorgica Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia cyriacigeorgica 135487 NZ_CP026745.1 Bac0001884 Sphingobium amiense Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium amiense 135719 NZ_AP018664.1 Bac0001885 Marinobacter lutaoensis str. T5054 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter lutaoensis 135739 MSCW00000000.1 Bac0001886 Jeotgalibacillus alimentarius str. YKJ-13 "Jeotgalibacillus alimentarius str. YKJ-13 is a rod-shaped, spore-forming bacterium that exhibits Gram-positive characteristics. This microbe demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 32.0°C, indicating a preference for moderately warm conditions.↵↵The ability of Jeotgalibacillus alimentarius str. YKJ-13 to form spores may provide it with a survival advantage in fluctuating environmental conditions, enabling it to withstand periods of nutrient deprivation or other stressors. The dual capability to utilize both oxygen and anaerobic conditions suggests that this organism may occupy diverse habitats, potentially including those where oxygen levels fluctuate. ↵↵Understanding the traits of Jeotgalibacillus alimentarius str. YKJ-13 contributes to a broader comprehension of its ecological role, particularly in environments where organic matter decomposition occurs. Its spore-forming ability could play a significant role in nutrient cycling within these ecosystems, as the organism may persist through adverse conditions and contribute to the breakdown of complex organic materials when conditions become favorable." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Jeotgalibacillus Jeotgalibacillus alimentarius Gram-negative / Gram-positive rod motile facultative aerobe/anaerobe 32 mesophilic spore-forming 135826 JXRQ00000000.1 Bac0001887 Actinoplanes awajinensis subsp. mycoplanecinus Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes awajinensis 135947 LLZH00000000.1 Bac0001888 Kocuria rosea subsp. polaris Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rosea rhizomes 136273 JSUH00000000.1 Bac0001889 Vibrio lentus Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus 136468 MCSI00000000.1 Bac0001890 Nitrosospira sp. Nsp1 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. Nsp1 136547 FMUF00000000.1 Bac0001891 Asanoa ishikariensis Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Asanoa Asanoa ishikariensis 137265 FNQB00000000.1 Bac0001892 Thalassomonas viridans str. XOM25 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassomonas Thalassomonas viridans 137584 NZ_CP059733.1 Bac0001893 Weissella cibaria str. DmW_103 "Weissella cibaria str. DmW_103 is a Gram-negative, facultative anaerobic bacterium that has been isolated from various habitats, including Korean kimchi, tropical fruits, pasture, saliva, and soil. This microbe is part of the diverse microbiota associated with fermented foods, particularly those prevalent in Korean cuisine, where it may play a role in the fermentation process of kimchi. Its ability to thrive in both aerobic and anaerobic conditions suggests a versatile metabolic capacity that allows it to adapt to different environmental niches.↵↵The presence of Weissella cibaria str. DmW_103 in diverse habitats, such as the human saliva and the fermentation of tropical fruits, indicates its potential significance in both food production and oral microbiology. The bacterium may contribute to the flavor and texture profiles of fermented products, while its presence in the oral cavity highlights its role in the complex dynamics of the oral microbiome. This adaptability could provide insights into its functional roles in fermentation and health, emphasizing the importance of microbial diversity in both ecological and dietary contexts. Understanding the specific contributions of Weissella cibaria str. DmW_103 may further elucidate its significance in fermentation science and its interactions within various ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella cibaria Negative Facultative anaerobe Chili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits 137591 NDXJ00000000.1 Bac0001894 Weissella cibaria str. CH2 "Weissella cibaria strain CH2 is a Gram-negative, facultative anaerobic bacterium commonly found in diverse habitats, including fermented foods such as Korean kimchi, as well as in natural environments like pasture, soil, and tropical fruits. This organism has been identified in various ecological niches, indicating its adaptability and potential role in fermentation processes and microbial communities.↵↵W. cibaria str. CH2's presence in Korean kimchi suggests a contribution to the fermentation process, possibly enhancing flavor profiles and extending shelf life through its metabolic activities. Additionally, its detection in saliva and on tropical fruits points to its versatility and interaction with different substrates, which may facilitate its survival and proliferation in varying environmental conditions.↵↵The bacterium's facultative anaerobic nature allows it to thrive in both oxygen-rich and oxygen-poor environments, which is advantageous for colonization in diverse habitats. This trait may also reflect its ability to engage in various metabolic pathways, potentially involving the fermentation of carbohydrates and other organic compounds.↵↵Overall, Weissella cibaria str. CH2 exemplifies a microbe that not only plays a significant role in food fermentation but also contributes to the complex microbial ecosystems found in natural environments, highlighting its ecological significance and potential applications in food science and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella cibaria Negative Facultative anaerobe Chili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits 137591 NZ_CP012880.1 Bac0001895 Weissella cibaria "Weissella cibaria is a Gram-positive, coccoid-shaped bacterium that thrives in mesophilic temperature ranges, is classified as a heterotroph, and functions primarily as a facultative anaerobe. This microbe is commonly found in various environments, particularly in fermented foods, human oral cavities, and the gastrointestinal tracts of humans and animals. As a Gram-positive organism, Weissella cibaria retains the crystal violet stain during the Gram staining process due to its thick peptidoglycan layer, which provides structural integrity and protection against environmental stressors. The coccoid morphology contributes to its ability to form biofilms, which is significant for colonization and interaction with other microbial species. The mesophilic temperature preference indicates that it grows optimally at moderate temperatures, typically between 30°C to 37°C, aligning with the conditions found in the human body and various food fermentation processes. As a heterotroph, Weissella cibaria derives its energy from organic compounds, which it ferments to produce lactic acid, making it an important player in food fermentation and preservation. Being a facultative anaerobe, it can grow in both the presence and absence of oxygen, allowing it to thrive in diverse environments, whether in aerobic conditions such as the oral cavity or anaerobic conditions found in the gut. Weissella cibaria has garnered attention in studies related to oral health and may play a role in preventing dental caries due to its ability to produce lactic acid while inhibiting pathogenic bacteria. Additionally, its presence in fermented foods not only contributes to flavor and texture but also enhances the nutritional profile of such products by introducing beneficial probiotics, underscoring its significance in both human health and culinary practices." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella cibaria Negative Facultative anaerobe Chili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits 137591 NZ_CP020929.1 Bac0001896 Pseudomonas indica Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas indica aerobic 137658 FNFD00000000.1 Bac0001897 Azospirillum sp. B510 "Azospirillum sp. B510 is a rice endophyte isolated in August 1999 from the surface-sterilized stems of rice plants (Oryza sativa cv. Nipponbare) cultivated in an experimental paddy field in Japan. In addition to being a diazotroph under free-living conditions, B510 was found to have positive motility, and to be capable of degrading plant cell walls. B510 is capable of colonizing internal rice tissues, and inoculation with B510 was shown to promote plant growth under both laboratory and field conditions. It is capable of fixing N(2) in planta. B510 inoculation increases stem number resulting in an increase in seed yield. The genome consists of 1 chromosome and 6 plasmids, 2 of which encode essential genes. There are 280 insertions sequences and at least 2 putative prophages in the genome. Three putative plant hormone-related genes encoding tryptophan 2-monooxytenase (iaaM) and indole-3-acetaldehyde hydrolase (iaaH), which are involved in indole-3-actic acid biosynthesis, and 1-aminocyclopropane-1-carboxylate deaminase (acdS), which reduces ethylene levels, were identified. Moreover, B510 inoculation enhanced disease resistance to virulent rice blast fungus and the bacterial pathogen Xanthomonas oryzae.15 Thus, Azospirillum sp. B510 is likely a beneficial bacterium with agronomic applications (adapted from PMID 20047946). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. B510 B510 Negative Bacilli No 1 2 Facultative 34 Mesophilic Terrestrial Symbiotic Nonsporulating No 137722 NC_013856.1 Bac0001898 Falseniella ignava Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Falseniella Falseniella ignava 137730 PKHE00000000.1 Bac0001899 Granulicatella balaenopterae Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Granulicatella Granulicatella balaenopterae 137733 FOGF00000000.1 Bac0001900 Helicobacter aurati Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter aurati microaerophile 137778 NXLW00000000.1 Bac0001901 Clostridium neonatale Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium neonatale anaerobic 137838 PDCJ00000000.1 Bac0001902 Candidatus Williamhamiltonella defendens "*Candidatus Williamhamiltonella defendens* is a Gram-negative, rod-shaped microbe that is primarily associated with host organisms. As an endosymbiont, it plays a significant role in the biology of its host, although specific interactions and the full extent of its contributions remain to be elucidated. The rod shape of this microbe suggests adaptations for efficient nutrient uptake and interaction with host cellular environments.↵↵While the exact ecological niche of *Candidatus Williamhamiltonella defendens* is not fully characterized, its designation as host-associated indicates a specialized relationship, potentially enhancing the host's survival or fitness. Such symbiotic relationships often involve the transfer of beneficial metabolites or the provision of essential nutrients that the host may lack, thus suggesting a mutualistic interaction.↵↵The study of *Candidatus Williamhamiltonella defendens* can provide valuable insights into the dynamics of host-microbe interactions, especially in understanding the evolutionary pressures that shape symbiotic relationships. Investigating its specific roles within the host microbiome could reveal fundamental mechanisms of cooperation and adaptation in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens Negative Rod Mesophilic HostAssociated Symbiotic 138072 NZ_CP017609.1 Bac0001903 Serratia symbiotica Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia symbiotica 138074 NZ_CP050857.1 Bac0001904 Dietzia psychralcaliphila str. DSM 44820 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia psychralcaliphila microaerophile 139021 PZZY00000000.1 Bac0001905 Chromohalobacter salexigens str. ANJ 207 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter israelensis 141390 MZZK00000000.1 Bac0001906 Thermomonas haemolytica str. DSM 13605 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Thermomonas Thermomonas haemolytica 141949 SMAP00000000.1 Bac0001907 Anaplasma ovis Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma ovis 142058 PKOE00000000.1 Bac0001908 Bradyrhizobium sp. C9 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. C9 142585 NWTG00000000.1 Bac0001909 Eubacterium sp. "Eubacterium sp. is a Gram-positive, nonsporulating bacterium characterized by its presence in the intestinal microflora of various animals. This genus typically forms chains and represents a significant component of the gut microbiota, contributing to the complex ecosystem within the digestive tract. Eubacterium sp. is mesophilic, thriving in moderate temperature ranges suitable for warm-blooded hosts, although its precise optimal temperature remains undetermined. This bacterium primarily employs a fermentative metabolism, utilizing a range of organic compounds as a chemoheterotrophic energy source. Notably, Eubacterium sp. is also known for its ability to metabolize bile acids, which plays a crucial role in fat digestion and absorption. Its anaerobic nature means that it thrives in environments devoid of oxygen, such as the gut, where it engages in symbiotic relationships with other microbial species, contributing to the maintenance of gut homeostasis. Eubacterium sp. is not only significant for its roles in digestion and nutrient absorption but also for its potential impact on host health. The fermentation processes it engages in can produce short-chain fatty acids (SCFAs), which have been associated with numerous health benefits, including anti-inflammatory effects and the modulation of immune responses. Therefore, understanding the dynamics of Eubacterium sp. in the gut microbiome can provide insights into its contribution to overall gut health and the potential for therapeutic applications in conditions such as inflammatory bowel disease and metabolic syndrome." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. Positive No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Chains Nonsporulating 142586 DNFP00000000.1 Bac0001910 Isobaculum melis Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Isobaculum Isobaculum melis microaerophile 142588 FOHA00000000.1 Bac0001911 [Mycoplasma] phocae Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma [Mycoplasma] phocae 142651 NZ_CP029295.1 Bac0001912 Salegentibacter salegens Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter salegens 143223 NZ_LT670848.1 Bac0001913 Zobellia uliginosa Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zobellia Zobellia uliginosa 143224 FTOB00000000.1 Bac0001914 Maricaulis salignorans Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Maricaulis Maricaulis salignorans 144026 FNHG00000000.1 Bac0001915 Nocardia ignorata str. DSM 44496 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia ignorata aerobic 29 mesophilic 145285 SNXK00000000.1 Bac0001916 Rathayibacter toxicus Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter toxicus 29 mesophilic 145458 LBFI00000000.1 Bac0001917 Micromonospora pallida Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora pallida 29 mesophilic 145854 FMHW00000000.1 Bac0001918 Micromonospora nigra Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora nigra 145857 FMHT00000000.1 Bac0001919 Mycolicibacterium boenickei Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium boenickei 146017 PDCO00000000.1 Bac0001920 Acetobacter orientalis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter orientalis 146474 JOPK00000000.1 Bac0001921 Acetobacter cibinongensis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter cibinongensis 146475 JOMQ00000000.1 Bac0001922 Acetobacter syzygii Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter syzygii 146476 NDFP00000000.1 Bac0001923 Streptomyces curacoi str. DSM 40107 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces curacoi 29 mesophilic 146536 LMWJ00000000.1 Bac0001924 Phocoenobacter uteri Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Phocoenobacter Phocoenobacter uteri 146806 UGTA00000000.1 Bac0001925 Corynebacterium simulans str. PES1 "Corynebacterium simulans str. PES1 is a Gram-positive bacterium characterized by its facultative anaerobic metabolism and inability to form spores. This strain thrives optimally at a temperature of 37.0°C, aligning with the typical conditions of mammalian hosts. As a facultative aerobe/anaerobe, C. simulans str. PES1 can adapt to varying oxygen levels, allowing it to survive in diverse environments, including both aerobic and microaerophilic conditions.↵↵The inability to form spores suggests that C. simulans str. PES1 may be less resilient to extreme environmental stresses compared to spore-forming bacteria, which utilize sporulation as a survival strategy. However, its Gram-positive nature indicates a robust cell wall structure, which may confer some degree of protection against environmental challenges.↵↵This strain's optimal growth temperature of 37.0°C suggests a potential association with warm-blooded hosts, where it may play a role in the microbiome or in specific biochemical processes. The adaptability of C. simulans str. PES1 to different oxygen conditions may facilitate its survival in complex ecosystems, potentially influencing nutrient cycling or microbial community dynamics. Understanding the physiological traits of this strain could provide insights into its ecological roles and interactions within microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium simulans Gram-positive non-motile facultative aerobe/anaerobe 37 mesophilic non-spore-forming 146827 NZ_CP014634.1 Bac0001926 Prochlorococcus marinus str. AS9601 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus AS9601 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 146891 NC_008816.1 Bac0001927 Streptomyces griseofuscus str. 199 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseofuscus 29 mesophilic 146922 PDES00000000.1 Bac0001928 Streptomyces parvulus str. 2297 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces parvulus 29 mesophilic 146923 QQBH00000000.1 Bac0001929 Paenibacillus larvae subsp. larvae str. LMG 16252 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae 147375 NZ_CP019658.1 Bac0001930 Paracoccus yeei "Paracoccus yeei is a gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures (20–45°C). It is classified as a chemoheterotroph, deriving energy from organic compounds while also requiring organic substrates for growth. This microbe is primarily found in various environmental niches, including soil, water, and plant rhizospheres, where it plays a crucial role in nutrient cycling and organic matter decomposition. P. yeei is known to be a facultative anaerobe, capable of surviving in both aerobic and anaerobic conditions, which allows it to adapt to diverse habitats. The gram-negative nature of P. yeei indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structural characteristic contributes to its resistance to certain antibiotics, making it an important subject of study in microbial resistance. Its rod shape, typical of many soil bacteria, enables efficient movement in various substrates, helping it to colonize and thrive in different environments. As a chemoheterotroph, P. yeei is involved in the degradation of complex organic matter, thus aiding in the recycling of nutrients necessary for plant growth. Its facultative anaerobic metabolism allows it to switch between aerobic respiration and fermentation, making it versatile in fluctuating oxygen conditions. P. yeei has garnered attention for its potential applications in bioremediation due to its ability to degrade environmental pollutants and its role in biogeochemical cycles. Research into its metabolic pathways might reveal novel enzymes that could be utilized in biotechnological processes, emphasizing its significance beyond environmental microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus yeei Negative Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 147645 NZ_CP020444.2 Bac0001931 Paracoccus yeei str. CCUG 32053 "Paracoccus yeei strain CCUG 32053 is a Gram-negative, nonsporulating coccus that exhibits chemoheterotrophic metabolism, utilizing organic compounds as its primary energy source. This microbe is obligately aerobic, requiring oxygen for its growth and metabolic processes. As a member of the soil microbiome, P. yeei str. CCUG 32053 plays a potential role in the degradation of organic matter, contributing to nutrient cycling within its habitat. ↵↵The coccoid morphology of P. yeei suggests adaptability to various environmental conditions, particularly in soil ecosystems where such shapes can be advantageous for surviving in diverse microhabitats. Its aerobic nature indicates a reliance on oxygen-rich environments, which may influence its distribution and ecological interactions within soil communities. The absence of sporulation in this strain further emphasizes its adaptation to stable environments where long-term survival strategies like spore formation are not necessary. ↵↵Understanding the traits of Paracoccus yeei str. CCUG 32053 can provide insights into its functional roles in soil ecosystems, particularly in relation to organic matter decomposition and nutrient cycling, thereby highlighting its importance in maintaining soil health and fertility." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus yeei Negative Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 147645 NZ_CP031078.1 Bac0001932 Paracoccus yeei str. TT13 "Paracoccus yeei strain TT13 is a Gram-negative, nonsporulating coccus that functions as a chemoheterotroph, deriving its energy from organic compounds. This microbe is predominantly found in soil environments, where it plays a role in the decomposition of organic matter and nutrient cycling. As an aerobe, P. yeei strain TT13 requires oxygen for its metabolic processes, which is typical of many soil-dwelling bacteria that contribute to aerobic degradation pathways.↵↵The spherical morphology of this strain may influence its interactions within soil microbiomes, potentially affecting its ability to colonize specific niches or compete for resources. The nonsporulating characteristic suggests that P. yeei strain TT13 may rely on other survival strategies to withstand unfavorable conditions in its habitat, such as forming biofilms or engaging in cooperative interactions with other microbial species.↵↵Understanding the traits of Paracoccus yeei strain TT13 not only highlights its role in soil ecosystems but also emphasizes the importance of aerobic chemoheterotrophs in maintaining soil health and fertility. The microbe's adaptations to its environment could provide insights into the resilience and functionality of microbial communities in response to environmental changes." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus yeei Negative Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 147645 NZ_CP024426.1 Bac0001933 Natronobacterium haloterrestre Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobacterium Natronobacterium haloterrestre 148448 FOKW00000000.1 Bac0001934 Limosilactobacillus ingluviei "Limosilactobacillus ingluviei is a nonsporulating, rod-shaped bacterium that serves as a chemoheterotroph, primarily utilizing organic compounds as its energy source. This microbe is part of the animal intestinal microflora, indicating its significant role in the digestive systems of various host organisms. ↵↵The presence of L. ingluviei in the gut may contribute to the complex microbial ecosystem, where it likely interacts with other microbial species and the host's metabolic processes. Its ability to thrive in the intestinal environment suggests potential functions related to fermentation and the breakdown of dietary components, which can influence nutrient absorption and overall gut health. ↵↵Further research into Limosilactobacillus ingluviei could provide insights into its specific contributions to gut microbiota dynamics and its potential implications for host health, considering the intricate relationships within the intestinal microbiome." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus ingluviei Rod No 1 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 148604 JQBA00000000.1 Bac0001935 Sulfuricurvum kujiense Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum kujiense 148813 DLUI00000000.1 Bac0001936 Apilactobacillus kunkeei str. AR114 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 JPYX00000000.1 Bac0001937 Apilactobacillus kunkeei Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 BDDX00000000.1 Bac0001938 Apilactobacillus kunkeei str. Fhon2 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 JXCU00000000.1 Bac0001939 Apilactobacillus kunkeei str. LAnu Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 JXDD00000000.1 Bac0001940 Apilactobacillus kunkeei str. MP2 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 JPUI00000000.1 Bac0001941 Streptococcus equi subsp. equi "Streptococcus equi subsp. equi is a Gram-positive bacterium characterized by its cocci shape and arrangement in pairs and chains. This nonsporulating microbe is facultatively anaerobic, allowing it to thrive in varying oxygen environments. S. equi subsp. equi is host-associated, indicating a specific relationship with its host organisms, predominantly affecting equine species. ↵↵Given its status as a facultative anaerobe, S. equi subsp. equi can adapt its metabolism based on the availability of oxygen, which may contribute to its survival and persistence in the host environment. The arrangement of bacteria in pairs and chains reflects a common characteristic of the Streptococcus genus, which can influence its interactions with the host immune system and other microbial communities. Understanding these traits is crucial, as they may play a role in the microbe's ecological niche and potential impact on equine health. ↵↵Overall, the host-associated nature of S. equi subsp. equi suggests that it may have co-evolved with equine hosts, potentially leading to specialized adaptations that enhance its survival in the specific ecological contexts of its hosts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Pairs-Chains Nonsporulating 148942 NZ_LR134273.1 Bac0001942 Salmonella enterica subsp. enterica serovar Hadar "Salmonella enterica subsp. enterica serovar Hadar is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as single cells. This microbe is classified as a chemoorganotroph, utilizing organic compounds as its energy source, which aligns with its habitat as a host-associated organism. Optimal growth conditions for S. enterica serovar Hadar are at 37.0°C, reflecting its adaptation to warm-blooded hosts. The bacterium exhibits microaerophilic oxygen requirements, indicating that it thrives in environments with reduced oxygen levels, which may be indicative of its ecological niche within the gastrointestinal tracts of various animals. ↵↵The microaerophilic nature of S. enterica serovar Hadar suggests a specialized adaptation that enables it to compete effectively with other microbial flora present in the host environment. This adaptation may also play a role in its survival and persistence within specific niches, where oxygen levels are not conducive to the growth of strictly aerobic or anaerobic microorganisms. Understanding these traits provides valuable insights into the ecological dynamics of S. enterica serovar Hadar and its interactions within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 149385 RUWP00000000.1 Bac0001943 Salmonella enterica subsp. enterica serovar Chester "Salmonella enterica subsp. enterica serovar Chester is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This serovar thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many host organisms. As a chemoorganotroph, S. enterica serovar Chester utilizes organic compounds as its energy source, indicating its reliance on host-derived nutrients in its habitat.↵↵The ecological niche of S. enterica serovar Chester is closely associated with hosts, which it presumably inhabits during various life stages. This host association suggests potential interactions with the host's microbiota, potentially influencing both the microbial community composition and the host's immune response. Understanding the environmental and biological contexts of S. enterica serovar Chester is critical for elucidating its role within host-associated ecosystems and its implications for food safety and public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 149386 SMQW00000000.1 Bac0001944 Salmonella enterica subsp. enterica serovar London "Salmonella enterica subsp. enterica serovar London is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as single cells. This microbe is classified as a chemoorganotroph, meaning it derives energy from organic compounds, and it thrives optimally at 37.0°C, which corresponds to the average body temperature of many warm-blooded hosts. ↵↵S. enterica serovar London is microaerophilic, indicating that it requires reduced levels of oxygen for growth, which aligns with its habitat as a host-associated organism. This adaptation may facilitate its survival and proliferation in the gastrointestinal tracts of various hosts, where oxygen levels are typically lower than in the external environment.↵↵The unique ecological insight into S. enterica serovar London lies in its potential role in the microbial communities of the intestinal tract, where it may interact with other microorganisms and the host immune system. These interactions could influence not only the health of the host but also the dynamics of microbial populations within the gut ecosystem. Understanding these relationships further underscores the importance of studying such serovars within the broader context of microbiome research and public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 149390 VDEE00000000.2 Bac0001945 Salmonella enterica subsp. enterica serovar Enteritidis "Salmonella enterica subsp. enterica serovar Enteritidis is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of its primary hosts. As a chemoorganotroph, S. Enteritidis relies on organic compounds for energy, indicating its adaptation to nutrient-rich environments commonly found within host organisms. ↵↵This serovar is classified as microaerophilic, meaning it requires reduced levels of oxygen for optimal growth, a trait that may facilitate its survival in the gastrointestinal tracts of animals and humans, where oxygen levels are lower than in the atmosphere. The host-associated habitat underscores its ecological role as both a commensal and a potential pathogen in various hosts, including poultry and humans. ↵↵Understanding the microaerophilic nature of S. Enteritidis can provide insights into its survival strategies and persistence in the gastrointestinal environment, where competition with other gut microbiota occurs. This unique adaptation may offer advantages in colonization and proliferation within host-associated habitats, reflecting the complex interplay between microbial communities in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles Human 149539 RSNG00000000.1 Bac0001946 Shewanella livingstonensis str. LMG 19866 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella livingstonensis 150120 NZ_CP034015.1 Bac0001947 Plantibacter flavus str. 251 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter flavus 150123 NZ_CP019402.1 Bac0001948 Anoxybacillus pushchinoensis Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus pushchinoensis anaerobic 150248 FOJQ00000000.1 Bac0001949 Pseudoalteromonas ruthenica Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas ruthenica 151081 PNBT00000000.1 Bac0001950 Lactobacillus intestinalis Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus intestinalis 151781 SRYV00000000.1 Bac0001951 Pseudopedobacter saltans Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pseudopedobacter Pseudopedobacter saltans 151895 QFOI00000000.1 Bac0001952 Pseudoalteromonas issachenkonii str. KMM 3549 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas issachenkonii 152297 NZ_CP011030.1 Bac0001953 Parageobacillus toebii str. PW12 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus toebii 153151 QREZ00000000.1 Bac0001954 Kozakia baliensis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Kozakia Kozakia baliensis 153496 NZ_CP014675.1 Bac0001955 Sporocytophaga myxococcoides str. PG-01 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Sporocytophaga Sporocytophaga myxococcoides 153721 BBLT00000000.1 Bac0001956 Agrococcus baldri Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus baldri 29 mesophilic 153730 FOZN00000000.1 Bac0001957 Hungatella hathewayi "Hungatella hathewayi is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites, including the gut, skin, and respiratory tract of humans and animals. As a chemoheterotroph, Hungatella hathewayi relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. This microbe is an obligate anaerobe, requiring the absence of oxygen to survive, which is why it is often found in environments with low oxygen levels, such as the gastrointestinal tract. The rod-shaped morphology of Hungatella hathewayi allows it to navigate through dense environments with ease, while its Gram-positive cell wall provides protection against external stresses. The mesophilic temperature preference of this microbe enables it to thrive in a wide range of environments, from the human body to various animal hosts. As an obligate anaerobe, Hungatella hathewayi has evolved unique metabolic pathways to cope with the absence of oxygen, producing various metabolites that can impact the surrounding environment. Hungatella hathewayi plays a significant role in the decomposition of complex organic matter, and its presence has been linked to the production of short-chain fatty acids, which can have beneficial effects on the host's health, such as regulating the immune system and maintaining a healthy gut microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi Positive Rod No 1 Anaerobic 37 Chemoheterotroph Animal intestinal microflora Sporulating 154046 CYZE00000000.1 Bac0001958 Turicibacter sanguinis "Turicibacter sanguinis is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites, including the gut, skin, and bloodstream, across different species. As a chemoheterotroph, Turicibacter sanguinis relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. Its rod-shaped morphology allows it to inhabit diverse environments, from the intestinal tract to the bloodstream, where it can interact with other microbes and the host's immune system. The mesophilic temperature preference of Turicibacter sanguinis enables it to thrive in temperatures ranging from 20°C to 45°C, making it well-suited to the human body's temperature. As an obligate anaerobe, Turicibacter sanguinis requires the absence of oxygen to grow, which is typically found in the gut and other anaerobic environments. The Gram-positive cell wall of Turicibacter sanguinis provides it with a thick peptidoglycan layer, offering protection against environmental stresses and host immune responses. Its ability to inhabit various body sites, including the gut and bloodstream, suggests a high degree of adaptability and potential for interaction with other microbes. The presence of Turicibacter sanguinis in the bloodstream has been associated with certain diseases, highlighting its potential role in human health and disease. Turicibacter sanguinis has been isolated from the blood of patients with bacterial sepsis, and its detection in clinical samples can serve as a diagnostic marker for certain infections. The unique characteristics of Turicibacter sanguinis make it a subject of ongoing research, with studies focusing on its role in the human microbiome and its potential implications for human health." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Turicibacter sanguinis Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 154288 CYXW00000000.1 Bac0001959 Mycobacterium montefiorense str. strain BS Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium montefiorense 154654 BFCH00000000.1 Bac0001960 Staphylococcus lutrae Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus lutrae aerobic 155085 PPRH00000000.1 Bac0001961 Fulvimonas soli str. DSM 14263 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Fulvimonas Fulvimonas soli 155197 QGHC00000000.1 Bac0001962 Bacillus toyonensis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NUCI00000000.1 Bac0001963 Bacillus wiedmannii str. Es2-45 "Bacillus wiedmannii strain Es2-45 is a Gram-positive, rod-shaped bacterium that exhibits a characteristic arrangement of cells in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobic organism, indicating its reliance on oxygen for growth and metabolism. ↵↵Bacillus wiedmannii is known to inhabit a variety of environments, which suggests its versatility and adaptability to different ecological niches. The presence of this bacterium in diverse habitats may contribute to its survival and proliferation under varying conditions, although the specific contexts of its habitat remain to be fully elucidated.↵↵The chain arrangement of Bacillus wiedmannii str. Es2-45 is a noteworthy feature, as it may influence its interactions with other microorganisms and its overall ecological role. This arrangement can affect the bacterium's ability to form biofilms or participate in microbial communities, potentially impacting nutrient cycling and the dynamics of microbial ecosystems. Understanding the specific ecological functions of Bacillus wiedmannii str. Es2-45 could provide insights into its contributions within its native environments and its potential applications in biotechnology or bioremediation." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 155322 MCAT00000000.1 Bac0001964 Gallibacterium genomosp. 2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium genomosp. 2 155517 JPXY00000000.1 Bac0001965 Fusobacterium vincentii "Fusobacterium vincentii is a Gram-negative, rod-shaped bacterium that is nonsporulating and thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is primarily host-associated, indicating a close relationship with its host organisms, which may include humans. As an anaerobe, F. vincentii relies on fermentation pathways for energy production, making it well-adapted to environments where oxygen is limited.↵↵The absence of sporulation suggests that F. vincentii does not have mechanisms for enduring extreme environmental conditions, which is typical for many anaerobic bacteria that inhabit stable, nutrient-rich niches within host tissues. The optimal growth temperature of 37.0°C aligns with the physiological temperature of warm-blooded hosts, further emphasizing its adaptation to life within host organisms.↵↵Fusobacterium vincentii's ecological role may be significant in the context of human oral and gastrointestinal microbiomes, where it could contribute to the complex interplay of microbial communities. Its anaerobic nature suggests involvement in processes such as the fermentation of dietary components and the modulation of host immune responses. Understanding the specific interactions of F. vincentii within these environments could provide insights into its potential contributions to both health and disease states, particularly in relation to oral health and periodontal disease." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium vincentii Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 155615 PEIJ00000000.1 Bac0001966 Weissella soli str. CECT 7031 "Weissella soli strain CECT 7031 is a rod-shaped bacterium that typically presents in singles or pairs. This organism is isolated from garden soil, suggesting a potential role in the soil ecosystem. The presence of Weissella soli in this habitat may indicate its involvement in soil microbial communities, contributing to nutrient cycling and organic matter decomposition. ↵↵As a member of the Weissella genus, this strain may exhibit metabolic pathways that facilitate the fermentation of carbohydrates, which could play a role in soil health and fertility. The ability of Weissella soli to thrive in soil environments underscores its potential significance in agricultural contexts, particularly in promoting plant growth and maintaining soil structure. ↵↵Furthermore, the isolation of this strain from garden soil highlights the diverse microbial interactions that occur in terrestrial ecosystems. Understanding the functional roles of such microorganisms can provide insights into soil biodiversity and the ecological balance within garden and agricultural soils. This understanding may also inform sustainable practices in soil management and crop production. Overall, Weissella soli str. CECT 7031 represents an intriguing component of the complex microbial landscape in soil environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella soli Rod garden soil; soil "Singles, Pairs" 155866 QRAS00000000.1 Bac0001967 Caulobacter vibrioides "Caulobacter vibrioides is a Gram-negative, rod-shaped bacterium that typically exists as single cells in aquatic environments. This microorganism thrives optimally at a temperature of 35.0°C and is classified as an aerobe, necessitating oxygen for its metabolic processes. ↵↵C. vibrioides exhibits a unique life cycle characterized by asymmetric cell division, leading to the formation of a stalked and a swarmer cell. The stalked cell, which is non-motile and attached to surfaces, plays a crucial role in nutrient acquisition, while the swarmer cell is motile and facilitates dispersal in aquatic habitats. This dual lifestyle reflects an adaptive strategy that allows the organism to exploit both attached and free-living niches effectively.↵↵In addition to its ecological role in nutrient cycling, C. vibrioides serves as a model organism for studying cellular differentiation and morphogenesis, providing insights into the complexity of microbial life. Its presence in aquatic ecosystems underscores the importance of such microorganisms in maintaining ecological balance and their potential contributions to biotechnological applications, such as bioremediation and biofilm formation." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides Negative Rod Yes 1 2 Aerobe 35 Mesophilic Aquatic Free living Singles 155892 NZ_CP023315.3 Bac0001968 Caulobacter vibrioides str. T5M6 "Caulobacter vibrioides str. T5M6 is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells. This microorganism thrives in aquatic environments, demonstrating an optimal growth temperature of 35.0°C and requiring oxygen for aerobic respiration. ↵↵C. vibrioides species are characterized by their distinctive life cycle, which includes a polar flagellum and the formation of a stalked cell that allows for attachment to surfaces in aquatic habitats. This adaptation is significant for survival and nutrient acquisition in varied environments. The ability of C. vibrioides str. T5M6 to thrive under aerobic conditions may influence its ecological role, particularly in nutrient cycling within aquatic ecosystems.↵↵The presence of this strain in freshwater or marine environments could provide insights into the dynamics of microbial communities, especially regarding its potential interactions with other microorganisms and its role in biofilm formation. The understanding of C. vibrioides str. T5M6’s life cycle and environmental preferences may contribute to broader studies on microbial ecology and the functional diversity of aquatic habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides Negative Rod Yes 1 2 Aerobe 35 Mesophilic Aquatic Free living Singles 155892 LNIY00000000.1 Bac0001969 Xylella fastidiosa subsp. sandyi Ann-1 str. ann-1 "Xylella fastidiosa subsp. sandyi Ann-1 str. ann-1 is a Gram-negative, rod-shaped bacterium that typically exists in a single-cell arrangement and demonstrates an aerobic metabolism. This strain thrives optimally at a temperature of 26.0°C, indicating a preference for moderate thermal conditions. ↵↵As a member of the Xylella fastidiosa species, this subspecies is known to inhabit host-associated environments, suggesting a close relationship with specific plant hosts. The ability of X. fastidiosa subsp. sandyi Ann-1 to exist in a host-associated habitat highlights its potential role in plant-microbe interactions, which may influence both microbial community dynamics and the health of host plants.↵↵Given its aerobic nature, X. fastidiosa subsp. sandyi Ann-1 likely relies on oxygen for its metabolic processes, which could have implications for its survival and growth patterns in various ecological niches. The precise relationship between this bacterium and its plant hosts remains an area for further investigation, particularly regarding its influence on plant physiology and the potential impacts on agricultural systems. Understanding these interactions may provide insights into managing ecosystems where this bacterium is present." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles 155920 NZ_CP006697.1 Bac0001970 Halobacillus trueperi str. KCTC 3686 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus trueperi 156205 QUAE00000000.1 Bac0001971 Corynebacterium imitans str. DSM 44264 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium imitans 156978 NZ_CP009211.1 Bac0001972 Helicobacter winghamensis "Helicobacter winghamensis is a Gram-negative, helical-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites of mammals and birds, including the gastrointestinal tract, liver, and gallbladder, across different species. As a Chemoheterotroph, H. winghamensis relies on organic compounds for energy and carbon, obtaining these necessary nutrients by breaking down complex molecules. This microbe is a Microaerophile, requiring a low-oxygen environment to survive, which is often found in the mucosal lining of the gastrointestinal tract. The helical shape of H. winghamensis allows it to effectively colonize and adhere to the epithelial cells of its host, facilitating the uptake of nutrients.The Gram-negative cell wall of H. winghamensis is composed of a thin peptidoglycan layer, an outer membrane containing lipopolysaccharides, and a periplasmic space. This unique cell wall structure contributes to its ability to evade the host's immune system and resist antimicrobial agents. The mesophilic temperature preference of H. winghamensis allows it to thrive in a wide range of environments, from the cool temperatures of the gastrointestinal tract to the warmer temperatures of the liver and gallbladder.H. winghamensis has been implicated in various diseases, including hepatitis and gallstones, in mammals and birds, highlighting the importance of understanding its role in the microbiome of its hosts. The ability of H. winghamensis to form biofilms and its resistance to antimicrobial agents make it a significant concern in the development of treatments for diseases associated with this microbe." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter winghamensis Negative Microaerophile 157268 MBPK00000000.1 Bac0001973 Fructobacillus ficulneus Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructobacillus Fructobacillus ficulneus 157463 BBXQ00000000.1 Bac0001974 Sterolibacterium denitrificans Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Sterolibacterium Sterolibacterium denitrificans 157592 NZ_LT837804.1 Bac0001975 Kushneria marisflavi str. SW32 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Kushneria Kushneria marisflavi 157779 NZ_CP021358.1 Bac0001976 Pseudomonas parafulva str. NS212 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas parafulva 157782 LDSM00000000.1 Bac0001977 Pseudomonas cremoricolorata str. ND07 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cremoricolorata aerobic 157783 NZ_CP009455.1 Bac0001978 Desulfosporosinus sp. Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus sp. 157907 DOPM00000000.1 Bac0001979 Sphaerochaeta pleomorpha str. Grapes "Sphaerochaeta pleomorpha strain Grapes is a Gram-negative, anaerobic bacterium characterized by its spherical shape and optimal growth temperature of 29.0°C. This species belongs to a group of microorganisms that thrive in low-oxygen environments, which may suggest its adaptation to specific ecological niches where oxygen availability is limited. ↵↵The Gram-negative nature of S. pleomorpha implies the presence of a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interactions with other microorganisms and its overall stability in various environments. The spherical morphology of this microbe may confer advantages in certain ecological contexts, such as buoyancy in liquid environments or enhanced nutrient uptake in biofilms.↵↵Understanding the growth conditions and morphological characteristics of S. pleomorpha str. Grapes can provide insights into its potential role in anaerobic ecosystems, such as those found in deep-sea sediments or within the digestive systems of certain organisms. The optimal temperature of 29.0°C suggests that this microbe may be well-suited to habitats that experience moderate thermal conditions, which could include various natural and anthropogenic environments.↵↵In summary, Sphaerochaeta pleomorpha str. Grapes exemplifies how specific traits can reflect an organism's ecological adaptations, particularly in anaerobic settings where it may contribute to biogeochemical cycles or interact with other microbial communities." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta pleomorpha Gram-negative sphere non-motile anaerobic 29 mesophilic 158190 NC_016633.1 Bac0001980 Novosphingobium resinovorum str. SA1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium resinovorum 158500 NZ_CP017078.1 Bac0001981 Pseudomonas graminis str. PDD-13b-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas graminis 158627 MTSB00000000.2 Bac0001982 Pseudomonas graminis str. WP_8 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas graminis 158627 SOCR00000000.1 Bac0001983 Bifidobacterium scardovii str. LMG 21589 "Bifidobacterium scardovii strain LMG 21589 is a Gram-positive, facultative anaerobic bacterium. As a member of the Bifidobacterium genus, this microorganism exhibits characteristic traits associated with its phylogenetic group, including its ability to ferment carbohydrates, which contributes to its ecological niche in various environments, particularly in the gastrointestinal tract of mammals. ↵↵The facultative anaerobic nature of Bifidobacterium scardovii allows it to thrive in both oxygen-rich and oxygen-poor conditions, providing it with metabolic flexibility that may enhance its survivability and colonization efficiency in diverse habitats. This adaptability is particularly significant in the gut microbiome, where fluctuating oxygen levels can occur due to various physiological and dietary factors.↵↵Further studies on Bifidobacterium scardovii strain LMG 21589 could elucidate its role in the gut microbiota and its potential contributions to host health, particularly in the context of gut homeostasis and metabolic processes. Understanding its specific interactions within the microbiome could provide insights into its ecological importance and potential applications in probiotic development or gut health management." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium scardovii Positive Facultative anaerobe 158787 JGZO00000000.1 Bac0001984 Cedecea neteri Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea neteri 158822 NZ_CP023526.1 Bac0001985 Cedecea lapagei str. SLM1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea lapagei 158823 PIQM00000000.1 Bac0001986 Cedecea lapagei Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea lapagei 158823 NZ_LR134201.1 Bac0001987 Enterobacter hormaechei str. MSP13 "Enterobacter hormaechei str. MSP13 is a Gram-negative bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is primarily host-associated, indicating a potential symbiotic or commensal relationship within its ecological niche. ↵↵The Gram-negative nature of E. hormaechei str. MSP13 suggests the presence of an outer membrane containing lipopolysaccharides, which may play a role in its interactions with the host's immune system. As a facultative anaerobe, this microbe can adapt to varying oxygen levels, which enhances its survival in diverse environments, particularly those associated with host organisms. ↵↵The ability to switch between aerobic respiration and fermentation could provide E. hormaechei str. MSP13 with a competitive advantage in fluctuating conditions, such as those found in the gastrointestinal tract of hosts. Moreover, its host-associated habitat implies that it may contribute to the microbial community structure within the host, potentially influencing metabolic processes or nutrient cycling. ↵↵Further exploration of Enterobacter hormaechei str. MSP13's interactions in its host environment could yield valuable insights into its role in microbial dynamics and its potential impact on host health, highlighting the intricate relationships between host-associated microbes and their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 NZ_CP054410.1 Bac0001988 Enterobacter hormaechei str. HBY "Enterobacter hormaechei str. HBY is a Gram-negative, facultative anaerobic bacterium predominantly associated with various host environments. As a member of the Enterobacter genus, this strain is characterized by its ability to thrive in both aerobic and anaerobic conditions, allowing it to adapt to diverse ecological niches within host organisms. The Gram-negative nature of E. hormaechei str. HBY indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a common feature among many bacteria in this classification, contributing to its resilience in fluctuating environments.↵↵The habitat of E. hormaechei str. HBY as host-associated suggests a potential role in the microbiota of specific organisms, where it may participate in various biological processes. While the specific interactions and functions of this strain within its host are not detailed in the provided traits, the ability to inhabit niches within a host indicates a possible involvement in metabolic activities or symbiotic relationships. ↵↵Overall, the adaptability of E. hormaechei str. HBY to both aerobic and anaerobic conditions, combined with its host-associated lifestyle, may suggest that it plays a role in the microbial dynamics of its host, influencing the overall health and metabolic functions of the host environment. Further studies would be necessary to elucidate the specific ecological roles and interactions of this strain within its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 NMVR00000000.1 Bac0001989 Staphylococcus aureus subsp. aureus Mu50 "Staphylococcus aureus subsp. aureus Mu50 is a Gram-positive, cocci-shaped bacterium that thrives in a mesophilic environment, with a temperature preference for 20-45°C. This organism is classified as a chemoheterotroph, utilizing organic compounds as its source of energy and carbon. It is commonly found in various human body sites, including the skin, nasal passages, respiratory tract, and gastrointestinal tract, demonstrating its versatility as a resident microbe. As a Gram-positive bacterium, S. aureus subsp. aureus Mu50 is characterized by a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during Gram staining, imparting a distinct purple color. This structural composition not only provides rigidity and protection from environmental stressors but also plays a pivotal role in its pathogenicity, as it can evade host immune responses. Being a mesophilic organism, S. aureus subsp. aureus Mu50 is well-adapted to the human body temperature, allowing it to thrive in various tissues and bodily fluids. As a chemoheterotroph, it relies on organic substrates for energy, which also positions it as a key player in exploiting nutrients within host environments. The bacterium is classified as a facultative anaerobe, meaning it can survive with or without oxygen, further enhancing its adaptability and survival in diverse ecological niches. This particular strain, Mu50, is of particular significance due to its resistance to methicillin and other beta-lactam antibiotics, a characteristic that poses significant challenges in clinical settings. Its ability to form biofilms contributes to its virulence, allowing it to adhere to medical devices and tissues, leading to persistent and difficult-to-treat infections. The continuous study of S. aureus subsp. aureus Mu50 is crucial for understanding the mechanisms of antibiotic resistance and developing strategies to combat staphylococcal infections." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Mu50 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles Nonsporulating 158878 NC_002774.1 Bac0001990 Staphylococcus aureus subsp. aureus N315 "Staphylococcus aureus subsp. aureus N315 is a Gram-positive bacterium that appears as cocci (spherical) arranged in clusters, thrives in moderate temperatures (mesophilic), is classified as a chemoheterotroph, and is a facultative anaerobe. This microbe is commonly found in various body sites, such as the skin, nasal passages, throat, and gastrointestinal tract of humans and animals, making it a versatile organism with significant ecological presence. The Gram-positive staining characteristic indicates a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain antibiotics. As a cocci, its spherical shape can aid in clustering, which is a hallmark of its pathogenicity, as these clusters can form biofilms that enhance its survival and virulence. Being mesophilic allows S. aureus N315 to thrive in the human body, where temperatures typically range around 37°C, making it well-adapted to colonize various niches within its host. As a chemoheterotroph, S. aureus N315 derives energy and carbon from organic compounds, allowing it to metabolize a wide range of substrates. The facultative anaerobic nature of this bacterium enables it to survive in both oxygen-rich and oxygen-poor environments, further increasing its adaptability and survival rate in different anatomical sites. Notably, Staphylococcus aureus subsp. aureus N315 was one of the first strains to be fully sequenced, serving as a critical model for understanding antibiotic resistance mechanisms, particularly MRSA (Methicillin-Resistant Staphylococcus aureus). Its ability to produce various virulence factors, such as toxins and enzymes, not only facilitates its pathogenic capabilities but also poses significant challenges in clinical settings, making it a major subject of research in infectious diseases." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus N315 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles Nonsporulating 158879 NC_002745.2 Bac0001991 Embleya scabrispora str. NF3 "Embleya scabrispora str. NF3 is a Gram-positive, aerobic bacterium characterized by its ability to form spores. This trait of sporulation allows the organism to withstand unfavorable environmental conditions, contributing to its resilience and potential survival in various habitats. As a Gram-positive microbe, it possesses a thick peptidoglycan layer in its cell wall, which is indicative of its structural integrity and plays a crucial role in its interaction with the surrounding environment.↵↵The aerobic nature of Embleya scabrispora str. NF3 suggests that it relies on oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. This trait may influence its ecological niche, allowing it to inhabit well-oxygenated soils or aquatic systems. The combination of its Gram-positive status and spore-forming ability may also suggest a level of adaptability to fluctuating conditions, enabling it to thrive in environments that experience shifts in nutrient availability or moisture levels.↵↵Understanding the traits of Embleya scabrispora str. NF3 emphasizes its potential role in nutrient cycling within ecosystems, particularly in aerobic environments where it may contribute to the degradation of organic matter through its metabolic activities. Its spore-forming capability further enhances its ecological resilience, allowing it to persist and emerge in response to suitable conditions, thus playing a significant role in the dynamics of microbial communities." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Embleya Embleya scabrispora Gram-positive non-motile aerobic spore-forming 159449 MWQN00000000.1 Bac0001992 Paraburkholderia sacchari str. LMG 19450 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sacchari aerobic 159450 JTDB00000000.2 Bac0001993 Samsonia erythrinae str. DSM 16730 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Samsonia Samsonia erythrinae 160434 SMBY00000000.1 Bac0001994 Enterococcus gilvus str. CR1 "*Enterococcus gilvus* strain CR1 is a nonsporulating, anaerobic cocci that exhibits chemoheterotrophic metabolism, utilizing organic compounds as its energy source. This species is primarily found in the gut of various hosts, suggesting a specialized niche within the gastrointestinal microbiome. The anaerobic nature of *E. gilvus* CR1 indicates its adaptation to the low-oxygen environment typical of host intestines, where it likely plays a role in fermentative processes.↵↵As a member of the gut microbiota, *E. gilvus* CR1 may contribute to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are essential for host health and metabolism. The presence of this strain in the gut ecosystem may be indicative of its potential role in maintaining microbial balance and gut homeostasis. Further study of *Enterococcus gilvus* CR1 may provide insights into its interactions with other gut microorganisms and its influence on host physiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gilvus Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Host gut Nonsporulating 160453 NZ_CP030933.1 Bac0001995 Pseudomonas putida KT2440 "Pseudomonas putida KT2440 is a Gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classified as a mesophile. This versatile microbe is a heterotroph, utilizing organic compounds as energy and carbon sources. P. putida inhabits various environments, including soil, water, and surfaces in both natural and engineered ecosystems, making it widely distributed across many ecological niches. As a Gram-negative organism, Pseudomonas putida possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural feature contributes to its robustness in diverse environments and enhances its ability to resist certain antibiotics. The rod-shaped morphology of Pseudomonas allows for motility through flagella, aiding in its adaptation and survival in fluctuating conditions. Pseudomonas putida KT2440 is classified as a facultative anaerobe, meaning it can adapt to both aerobic and anaerobic environments. This adaptability allows it to thrive in various ecological settings, including oxygen-rich environments, such as water and soil, as well as in low-oxygen conditions, such as sediments. The bacterium is well-known for its metabolic versatility; it can degrade a wide range of organic pollutants, including aromatic hydrocarbons and other xenobiotic compounds, making it a valuable organism in bioremediation efforts to clean up contaminated environments. Moreover, Pseudomonas putida KT2440 has been extensively studied for its potential in biotechnology applications. It possesses unique metabolic pathways that enable it to produce biodegradable plastics and biofuels, presenting avenues for sustainable development. The opportunistic nature of this microbe also makes it a fascinating subject of study in microbial ecology and synthetic biology, as researchers explore its capabilities for bioengineering and environmental restoration." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida KT2440 Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Nonsporulating No 160488 AE015451 Bac0001996 Streptococcus pyogenes M1 GAS "The group A streptococci (GAS, Streptococcus pyogenes) are gram-positive, nonmotile, nonsporeforming coccus that occur in chains or in pairs of cells. Individual cells are round-to-ovoid cocci, 0.6-1.0 micrometer in diameter. They are catalase-negative aerotolerant anaerobe (facultative anaerobe) which require enriched medium containing blood in order to grow. Their capsule is composed of hyaluronic acid. GAS are important human pathogens which can cause a variety of diseases, ranging from mild infections to very severe invasive diseases. The M protein is a highly polymorphic cell-surface molecule that is antiphagocytic and forms the basis of a scheme commonly used to classify GAS strains. Serotype M3 strains cause a higher rate of lethal infections than strains of other M types. In addition, serotype M3 and other GAS strains can undergo rapid shifts in disease frequency and display epidemic behaviour. Strict human pathogen responsible for a wide variety of diseases, including pharyngitis, scarlet fever, impetigo, septicemia, toxic shock syndrome, flesh-eating disease, rheumatic fever and acute glomerulonephritis. MGAS5005 was isolated in 1996 from the cerebrospinal fluid of an infected patient in Ontario, Canada, and has been used extensively in studies of GAS pathogenesis. (EBI Integr8)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes M1 GAS Positive Cocci No 1 1 Facultative 30 Mesophilic HostAssociated Free living Homo sapiens Chains-Pairs Nonsporulating Yes 160490 NC_002737.2 Bac0001997 Xylella fastidiosa 9a5c "Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa 9a5c Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles No 160492 NC_002488.3 Bac0001998 Acidihalobacter prosperus str. F5 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Acidihalobacter Acidihalobacter yilgarnensis 160660 NZ_CP017415.1 Bac0001999 Acidihalobacter prosperus str. V6 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Acidihalobacter Acidihalobacter aeolianus 160660 NZ_CP017448.1 Bac0002000 Agrobacterium larrymoorei str. CFBP5473 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium larrymoorei 160699 NZ_CP039692.1 Bac0002001 Paenibacillus borealis str. DSM 13188 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus borealis 160799 NZ_CP009285.1 Bac0002002 Paenibacillus borealis Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus borealis 160799 MPTB00000000.1 Bac0002003 Acidithiobacillus ferrivorans str. PQ33 Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrivorans 160808 NZ_CP021415.1 Bac0002004 Pseudoalteromonas phenolica Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas phenolica 161398 PNBV00000000.1 Bac0002005 Corynebacterium phocae str. DSM 44612=M408/89/1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium phocae 161895 NZ_CP009249.1 Bac0002006 Corynebacterium camporealensis str. DSM 44610 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium camporealensis 161896 NZ_CP011311.1 Bac0002007 Dietzia natronolimnaea str. S-XJ-1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia natronolimnaea microaerophile 161920 NTGA00000000.1 Bac0002008 Paenibacillus naphthalenovorans str. 4B1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus naphthalenovorans 162209 BJCS00000000.1 Bac0002009 Microbacterium hominis str. LCDC 84-0209 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium hominis 162426 LRYC00000000.1 Bac0002010 Pseudomonas lini Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lini 163011 NZ_LT629746.1 Bac0002011 Virgibacillus necropolis "Virgibacillus necropolis is a Gram-positive, rod-shaped bacterium distinguished by its ability to form spores under aerobic conditions. This microbe optimally thrives at a temperature of approximately 29.0 °C, suggesting a preference for moderately warm environments. The spore-forming capability of V. necropolis contributes to its resilience and adaptability in various ecological niches, allowing it to survive in potentially harsh conditions.↵↵As an aerobic organism, V. necropolis relies on oxygen for its metabolic processes, further indicating its ecological role in environments where oxygen is readily available. This bacterium may be involved in the decomposition of organic matter, playing a significant role in nutrient cycling within its habitat. The ability to sporulate not only enhances its survival during unfavorable conditions but may also facilitate its dispersal in environments where nutrients are fluctuating.↵↵Understanding the physiological traits of Virgibacillus necropolis provides insights into its potential roles in biogeochemical cycles, particularly in the context of organic matter degradation and soil health. Its unique combination of traits positions it as an interesting subject for further research into microbial ecology and the dynamics of microbial communities in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus necropolis Gram-positive rod aerobic 29 mesophilic spore-forming 163877 NZ_CP022437.1 Bac0002012 Thauera aminoaromatica Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera aminoaromatica 164330 NC_011667.1 Bac0002013 Roseicyclus mahoneyensis str. DSM 16097 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseicyclus Roseicyclus mahoneyensis 164332 QGGW00000000.1 Bac0002014 Streptomyces puniciscabiei str. TW1S1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces fodineus 164348 NZ_CP017248.1 Bac0002015 Latilactobacillus fuchuensis Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus fuchuensis 164393 NZ_LT984417.1 Bac0002016 Cupriavidus phytorum Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus phytorum 164546 NZ_LT976865.1 Bac0002017 Cupriavidus taiwanensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus taiwanensis 164546 OFSV00000000.1 Bac0002018 Diaphorobacter nitroreducens str. SL-205 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter nitroreducens 164759 NZ_CP016278.1 Bac0002019 Diaphorobacter nitroreducens str. DSM 15985 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter nitroreducens 164759 RJVL00000000.1 Bac0002020 Segatella copri "Segatella copri is a Gram-negative, anaerobic bacterium that inhabits the gastrointestinal tract of various hosts. This microbe is part of the complex microbial community within the gut, where it plays a role in the overall microbiota composition and metabolic processes. As an anaerobe, Segatella copri thrives in oxygen-depleted environments, which are characteristic of the intestinal niche. ↵↵The Gram-negative nature of Segatella copri implies that its cellular structure includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature may influence its interactions with the host's immune system and its resilience within the gut environment. ↵↵Understanding the specific metabolic activities and interactions of Segatella copri within the gut microbiome could provide valuable insights into its potential roles in digestion, nutrient absorption, and overall gut health. The presence of this bacterium in the gut suggests a possible contribution to the maintenance of microbial diversity, which is crucial for a balanced and functional microbiome. Further research into Segatella copri could elucidate its specific contributions to gut ecology and its interactions with other microbial species, highlighting its significance in the complex interplay of gut microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe gut 165179 QSUC00000000.1 Bac0002021 Synechococcus sp. WH 8109 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. WH 8109 166314 NZ_CP006882.1 Bac0002022 Roseburia intestinalis "Roseburia intestinalis is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, of numerous species. As an Obligate Anaerobe, it requires a strict absence of oxygen to survive. The Gram-positive characteristic is due to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining process. Its rod shape is typical of many bacterial species, allowing for efficient movement and absorption of nutrients. As a mesophilic microbe, Roseburia intestinalis grows best in temperatures ranging from 20-45°C, which is ideal for its habitat in the human gut. As a Chemoheterotroph, Roseburia intestinalis relies on organic compounds for energy and carbon sources, breaking down complex molecules into simpler ones. This metabolic process is crucial for its survival and allows it to interact with other microorganisms in its ecosystem. The ability to inhabit various body sites, including the gut, skin, and respiratory tract, of different species, highlights its adaptability and versatility. The strict requirement for anaerobic conditions is a result of its evolved metabolic pathways, which are sensitive to oxygen. Roseburia intestinalis has been implicated in the production of short-chain fatty acids, particularly butyrate, which plays a crucial role in maintaining gut health and regulating the immune system. Its presence in the gut microbiome has been linked to various health benefits, including improved glucose metabolism and enhanced immune function. The unique combination of characteristics in Roseburia intestinalis makes it a key player in the complex ecosystem of the human gut, where it contributes to the balance and diversity of the microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia intestinalis Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 166486 QSFP00000000.1 Bac0002023 Prochlorococcus marinus subsp. marinus str. CCMP1375 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus CCMP1375 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 167539 NC_005042.1 Bac0002024 Prochlorococcus marinus str. MIT 9116 "Prochlorococcus marinus strain MIT 9116 is a Gram-negative, coccoid bacterium that plays a significant role in marine ecosystems as a photosynthetic organism. This microbe thrives in aquatic habitats, where it utilizes light energy to drive its metabolic processes, contributing to primary production in oligotrophic waters. Its small cell size and high surface-to-volume ratio enable efficient light absorption, which is essential for its survival in nutrient-poor environments.↵↵Prochlorococcus marinus str. MIT 9116 is distinguished by its unique photosynthetic machinery, which includes specialized chlorophyll pigments that allow it to absorb light at varying depths in the ocean, optimizing its energy acquisition in diverse light conditions. This adaptability not only enhances its survival but also supports broader ecological functions, such as carbon fixation and oxygen production, which are vital to marine food webs.↵↵The presence of Prochlorococcus marinus in the photic zone of oceans underscores its ecological significance, as it represents one of the most abundant photosynthetic organisms on Earth. Its ability to flourish in low-nutrient conditions makes it a key player in biogeochemical cycles, particularly in the cycling of carbon and other nutrients in marine environments. This microbe exemplifies the intricate balance of life in oceanic systems, where even the smallest organisms can have profound impacts on global ecological dynamics." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 167544 JNAJ00000000.1 Bac0002025 Prochlorococcus marinus str. MIT 9301 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus MIT 9301 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 167546 NC_009091.1 Bac0002026 Prochlorococcus marinus str. MIT 9314 "Prochlorococcus marinus str. MIT 9314 is a Gram-negative, coccoid cyanobacterium that plays a crucial role in aquatic ecosystems as a photosynthetic microbe. This organism exhibits a spherical shape, which is characteristic of its genus, and thrives in marine environments. Prochlorococcus marinus is notable for its ability to utilize sunlight as an energy source, contributing significantly to primary production in oligotrophic waters, where nutrient levels are low.↵↵This strain is particularly adapted to the open ocean, where it forms part of the phytoplankton community. The photosynthetic capabilities of Prochlorococcus marinus enable it to fix carbon dioxide, thereby influencing carbon cycling and contributing to the global carbon budget. Its small size and efficiency in utilizing light make it a predominant species in the photic zone of the ocean, where it can be found at various depths depending on light availability.↵↵The ecological significance of Prochlorococcus marinus str. MIT 9314 extends beyond its role in primary production, as it serves as a food source for various marine organisms, thus supporting the marine food web. Additionally, its capacity for photosynthesis not only aids in oxygen production but also impacts atmospheric carbon dioxide levels, highlighting its contribution to climate regulation in marine environments. Understanding the traits and functions of this microbe can provide insights into the dynamics of marine ecosystems and the potential responses of these systems to changing environmental conditions." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 167548 JNAO00000000.1 Bac0002027 Prochlorococcus marinus str. MIT 9401 "Prochlorococcus marinus strain MIT 9401 is a Gram-negative, coccoid cyanobacterium that plays a significant role in marine ecosystems due to its photosynthetic capabilities. This microbe thrives in aquatic environments, where it utilizes sunlight as its primary energy source, contributing to primary production in oligotrophic waters. ↵↵Characterized by its small size and spherical shape, Prochlorococcus marinus str. MIT 9401 is among the most abundant photosynthetic organisms in the ocean, particularly in nutrient-poor regions. Its adaptation to low-light conditions allows it to occupy ecological niches that are less accessible to larger phytoplankton, thus influencing the dynamics of marine food webs. ↵↵The presence of Prochlorococcus species, including MIT 9401, is indicative of the ecological health of their environments, as they are integral to carbon cycling and oxygen production within the marine biosphere. This strain exemplifies the remarkable diversity and adaptability of marine cyanobacteria, showcasing how such microorganisms can thrive in specific habitats while supporting broader ecological functions. The study of Prochlorococcus marinus str. MIT 9401 not only enhances our understanding of microbial life in the ocean but also underscores the importance of phytoplankton in global biogeochemical cycles." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 167551 JNAR00000000.1 Bac0002028 Prochlorococcus marinus str. NATL1A "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus NATL1A Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 167555 NC_008819.1 Bac0002029 Colwellia psychrerythraea 34H Colwellia psychrerythraea has been isolated from Arctic marine sediments. Maximum cell yield is achieved at subzero temperature (-1 degree Celsius). Cells continue to swim in sugar solutions down to -10 degrees Celsius and they can grow under deep-sea pressures. It produces cold-active enzymes with low temperature optima for activity and marked heat instability. (HAMAP: COLP3) Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 34H Negative Rod Yes 1 2 Facultatively anaerobe 8 Psychrophilic Specialized Free living Singles No 167879 NC_003910.7 Bac0002030 Pseudomonas costantinii str. LMG 22119 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas costantinii aerobic 168469 MDDR00000000.1 Bac0002031 Escherichia coli O127:H6 "Escherichia coli O127:H6 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain, like other members of the Escherichia coli species, is a facultative anaerobe, meaning it has the capability to thrive in both aerobic and anaerobic environments. E. coli O127:H6 exhibits optimal growth at 37.0°C, a temperature commonly associated with the warm-blooded hosts it inhabits. ↵↵As a host-associated microbe, E. coli O127:H6 is often found in the gastrointestinal tract of mammals, where it plays a role in various physiological processes. The adaptation to a host environment suggests a potential for interactions with the host's microbiome, which could influence nutrient absorption and immunity. Further investigation into this strain may yield insights into its specific interactions within the gastrointestinal ecosystem, as well as its role in maintaining gut homeostasis or contributing to dysbiosis under certain conditions. Understanding these dynamics could enhance our knowledge of microbial ecology and the balance of microbial populations in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 168807 NZ_LT827011.1 Bac0002032 Pseudomonas extremorientalis str. LMG 19695 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas extremorientalis aerobic 169669 MDGK00000000.1 Bac0002033 Mycobacterium lacus Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium lacus 169765 LQPF00000000.1 Bac0002034 Staphylococcus pettenkoferi "Staphylococcus pettenkoferi is a Gram-positive cocci-shaped bacterium that thrives in a mesophilic temperature range, is classified as a chemoheterotroph, and is facultative anaerobic. This microbe predominantly colonizes human skin and mucosal surfaces, making it a part of the normal flora found in various body sites, including the skin, respiratory tract, and gastrointestinal tract. As a Gram-positive organism, Staphylococcus pettenkoferi retains the crystal violet stain used in the Gram staining procedure, resulting in a deep purple coloration. This characteristic is indicative of a thick peptidoglycan layer in its cell wall, which provides structural support and protection against environmental stress. The cocci shape refers to its spherical morphology, which is typical of staphylococci, often forming clusters resembling bunches of grapes due to their division in multiple planes. Preferring moderate temperatures, S. pettenkoferi exhibits optimal growth around 30 to 37 degrees Celsius, aligning it with typical human body temperatures. As a chemoheterotroph, it derives its energy and carbon from organic compounds, which it metabolizes to support its growth and reproduction. The facultative anaerobic nature of this bacterium means it can grow in both the presence and absence of oxygen, allowing it to adapt to various environments within the host body. Additionally, Staphylococcus pettenkoferi has garnered interest for its role in human health, as it can act as a potential pathogen under certain conditions, particularly in immunocompromised individuals. Its ability to form biofilms enhances its persistence on synthetic surfaces, raising concerns in clinical settings. This bacterium's complex interactions with its host microbiome continue to be an area of research, as understanding these dynamics could lead to better therapeutic interventions and management strategies for infections associated with staphylococci." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pettenkoferi Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Mesophilic Host epidermis Nonsporulating 170573 PNGG00000000.1 Bac0002035 Azotobacter beijerinckii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter beijerinckii 170623 FNYQ00000000.1 Bac0002036 Vibrio neptunius Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio neptunius 170651 JXXU00000000.1 Bac0002037 Vibrio kanaloae Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio kanaloae 170673 SYVG00000000.1 Bac0002038 Vibrio chagasii str. LC2-408 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio chagasii aerobic 170679 MSCI00000000.1 Bac0002039 Streptococcus pneumoniae R6 "Streptococcus pneumoniae R6 is a gram-positive, lancet-shaped bacterium that thrives in the moderate temperature range typical of mesophiles and is classified as a chemoheterotroph. Commonly found in human respiratory tracts, this versatile microbe can also inhabit various body sites, including the nasopharynx and even the bloodstream in cases of invasive disease. As a facultative anaerobe, S. pneumoniae R6 can grow in both the presence and absence of oxygen, although it generally prefers environments with oxygen for optimal growth. The gram-positive nature of S. pneumoniae R6 indicates a thick peptidoglycan layer in its cell wall, making it resilient against certain environmental stressors. This characteristic is critical for its survival in the human host, where it can evade immune responses. The bacterium's lancet-shaped cocci arrangement allows for efficient colonization of mucosal surfaces, contributing to its pathogenicity. Streptococcus pneumoniae is predominantly transmitted through respiratory droplets, often leading to illnesses such as pneumonia, meningitis, and otitis media. As a chemoheterotroph, S. pneumoniae R6 derives its energy from organic compounds, specifically carbohydrates, which are metabolized anaerobically or aerobically. Its ability to function as a facultative anaerobe provides a survival advantage in various environments, allowing it to persist in a host even when oxygen levels fluctuate or become depleted. S. pneumoniae R6 is also known for its genetic tractability, serving as a model organism in microbiological research. Its genome has been fully sequenced, facilitating studies on bacterial genetics, antibiotic resistance mechanisms, and the development of vaccines. Notably, it has played a pivotal role in elucidating the principles of transformation and the gene transfer process in bacteria, contributing significantly to our understanding of microbial genetics and evolution." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae R6 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Homo sapiens Chains - Pairs Nonsporulating No 171101 NC_003098.1 Bac0002040 Mycoplasmopsis citelli Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis citelli 171281 NZ_LR215036.1 Bac0002041 Mycoplasmopsis columboralis Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis columboralis 171282 NZ_LR215039.1 Bac0002042 Mycoplasmopsis mustelae str. ATCC 35214 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis mustelae 171289 SOCN00000000.1 Bac0002043 Paenibacillus agaridevorans str. T-3040 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus agaridevorans 171404 BDQX00000000.1 Bac0002044 Tistrella mobilis str. MCCC 1A02139 Pseudomonadati Pseudomonadota Alphaproteobacteria Geminicoccales Geminicoccaceae Tistrella Tistrella mobilis 171437 LPZR00000000.1 Bac0002045 Oceanobacillus picturae "Oceanobacillus picturae is a Gram-positive, rod-shaped bacterium that thrives in moderately high temperatures, classifying it as a thermophile. This microbe is a chemoheterotroph, deriving its energy from organic compounds, and is an obligate aerobe, requiring oxygen for its growth and metabolic processes.As a Gram-positive organism, O. picturae possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram-staining procedure, resulting in a purple coloration under the microscope. This characteristic not only provides structural support but also play a vital role in the bacterium's ability to withstand various environmental stresses. Its rod-shaped morphology enables effective motility in aquatic environments, where it is typically found as a part of diverse microbial communities. The temperature preference of O. picturae aligns with its classification as a thermophile, thriving optimally in warmer waters, such as those found in marine ecosystems. Its role as a chemoheterotroph highlights its reliance on organic substrates, allowing it to utilize complex compounds from its environment, which fosters interactions with other microorganisms and contributes to nutrient cycling within its habitat. Being an obligate aerobe, O. picturae is dependent on oxygen, which necessitates specific ecological niches where oxygen levels are sufficient for its metabolism. Oceanobacillus picturae has been studied not only for its ecological significance in marine environments but also for its potential applications in biotechnology, including bioremediation and industrial processes, due to its unique metabolic capabilities. Researchers are exploring its biotechnological applications, particularly its ability to degrade complex organic materials in the presence of oxygen, which could have implications for environmental sustainability efforts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus picturae Positive Rod No 1 aerobic / microaerophile Chemoheterotroph Mesophilic Multiple Nonsporulating 171693 CCAX000000000.1 Bac0002046 Brevundimonas nasdae "Brevundimonas nasdae is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism, thriving optimally at a temperature of 29.0°C. This microbe is part of the diverse genus Brevundimonas, which is characterized by its distinct morphological and physiological traits. The Gram-negative classification indicates that B. nasdae possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its environmental resilience and adaptability.↵↵The aerobic nature of B. nasdae suggests that it relies on oxygen for its metabolic processes, which is a common trait among many environmental bacteria that play crucial roles in various biogeochemical cycles. The optimal growth temperature of 29.0°C indicates a preference for moderate temperatures, aligning with conditions found in diverse habitats, including soil and aquatic environments.↵↵Brevundimonas species, including B. nasdae, are often encountered in association with organic matter and can contribute to nutrient cycling and degradation processes in their ecosystems. Their ability to thrive in aerobic conditions may provide insights into their involvement in the decomposition of organic materials and the maintenance of microbial diversity in natural habitats. Given the increasing interest in microbial ecology and bioremediation, understanding the specific roles of B. nasdae in its ecological niche could illuminate its potential applications in environmental management and sustainability practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas nasdae Gram-negative rod aerobic 29 mesophilic 172043 JWSY00000000.1 Bac0002047 Sphingomonas yabuuchiae str. NS355 "Sphingomonas yabuuchiae strain NS355 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0 °C. This organism belongs to the genus Sphingomonas, which is characterized by its diverse metabolic capabilities and adaptation to various environments. The Gram-negative nature of S. yabuuchiae suggests a complex cell wall structure, typically associated with an outer membrane containing lipopolysaccharides, which may influence its interactions with the surrounding environment and other microorganisms.↵↵The rod shape of S. yabuuchiae enables efficient nutrient uptake and mobility, which may contribute to its ecological versatility. Given its aerobic requirement, this strain likely participates in processes that involve the degradation of organic compounds in oxygen-rich environments. The optimal growth temperature of 29.0 °C suggests that S. yabuuchiae is well-suited for environments that are moderately warm, potentially including soil and aquatic systems where organic matter is abundant.↵↵Moreover, the metabolic pathways utilized by Sphingomonas species are often linked to bioremediation processes, particularly in the breakdown of complex pollutants. This trait underscores the potential ecological role of S. yabuuchiae in contributing to environmental health by participating in carbon cycling and the detoxification of contaminated environments, highlighting its importance in microbial ecology and biotechnology applications." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas yabuuchiae Gram-negative rod aerobic 29 mesophilic 172044 LDTF00000000.1 Bac0002048 Elizabethkingia miricola str. EM_CHUV Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia miricola 172045 NZ_CM003640.1 Bac0002049 Elizabethkingia miricola Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia miricola 172045 LSGQ00000000.1 Bac0002050 Paenibacillus kribbensis str. AM49 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus kribbensis 172713 NZ_CP020028.1 Bac0002051 Methylobacter tundripaludum str. OWC-G53F "Methylobacter tundripaludum str. OWC-G53F is a Gram-negative, nonsporulating coccus that thrives as a chemoheterotrophic organism, primarily found in soil environments. This bacterium exhibits optimal growth at a temperature of 20.0 °C, which suggests a preference for cooler habitats, potentially reflecting adaptations to its native tundra-like ecosystems. ↵↵As a member of the Methylobacter genus, this strain is likely involved in carbon cycling processes, utilizing organic compounds as energy sources. The nonsporulating nature of M. tundripaludum str. OWC-G53F indicates a reliance on environmental stability for survival and reproduction, which may limit its resilience to harsh conditions typically encountered in soil environments. ↵↵Given its specific traits, M. tundripaludum str. OWC-G53F may play a crucial role in the degradation of organic matter and the regulation of soil nutrient dynamics, contributing to the overall health of its ecosystem. Understanding the ecological functions of this strain could provide insights into microbial interactions within soil communities and the broader implications for carbon cycling in tundra ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylobacter Methylobacter tundripaludum Negative Cocci No 1 20 Chemoheterotroph Soil Nonsporulating 173365 PTIY00000000.1 Bac0002052 Methylocystis rosea str. GW6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylocystis Methylocystis rosea 173366 NZ_CP034086.1 Bac0002053 Sphingopyxis witflariensis str. DSM 14551 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis witflariensis 173675 NISJ00000000.1 Bac0002054 Brevibacillus invocatus Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus invocatus 173959 RHHR00000000.1 Bac0002055 Streptococcus sinensis str. HKU4 "Streptococcus sinensis str. HKU4 is a spherical-shaped bacterium classified within the genus Streptococcus. This strain exhibits the typical morphology of cocci, which are characterized by their round shape and tendency to form chains or pairs. While the specific ecological niche of S. sinensis str. HKU4 has not been detailed in the provided traits, members of the Streptococcus genus are commonly found in various environments, including the human microbiota and oral cavity, suggesting a potential role in host-associated environments.↵↵The physiological properties of S. sinensis str. HKU4 remain to be fully elucidated, but the genus is generally known for its fermentative metabolism, which allows for survival in diverse ecological contexts. Additionally, the presence of this strain in microbial studies may indicate its importance in understanding the diversity and functional capabilities of streptococci within specific habitats.↵↵Given the prevalence of streptococci in both health and disease, further investigation into the ecological roles and interactions of S. sinensis str. HKU4 could provide valuable insights. Its characterization may enhance our understanding of microbial community dynamics, particularly in environments where Streptococcus species play significant roles in maintaining homeostasis or influencing host interactions. This highlights the potential for unraveling the complex relationships between microorganisms and their hosts in various ecological settings." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sinensis Cocci 176090 JPEN00000000.1 Bac0002056 Staphylococcus epidermidis RP62A "Staphylococcus epidermidis RP62A is a Gram-positive, cocci-shaped bacterium that thrives optimally at human body temperature (37°C), categorizing it as a mesophile. As a heterotroph, it derives its nutrients from organic carbon sources, specifically utilizing complex carbohydrates and proteins found in its environment. This organism is naturally found on human skin and mucosal surfaces, highlighting its presence as part of the normal microbiota of all possible sites on the human body, including the epidermis, respiratory tract, and urogenital tract. The shape of S. epidermidis is spherical, typically appearing in clusters resembling grapes. This arrangement facilitates its ability to form biofilms, particularly on medical devices such as catheters and prosthetic heart valves. As a facultative anaerobe, S. epidermidis can grow in both aerobic and anaerobic environments, allowing it to adapt to diverse host conditions. Its metabolic versatility contributes to its survival and colonization ability across various body sites. S. epidermidis RP62A is known for its role as a commensal organism, contributing to the skin’s natural defense mechanism against pathogenic bacteria by competing for nutrients and producing antimicrobial peptides. However, it can also be an opportunistic pathogen, particularly in immunocompromised individuals or those with implanted medical devices, leading to infections that are often associated with biofilm formation.This strain, in particular, has been extensively studied due to its ability to resist many antibiotics, offering insights into the mechanisms of antibiotic resistance and biofilm-related infections. The intricate balance between its role as a harmless commensal and a potential pathogen emphasizes the complexity of the human microbiome and its implications for health and disease." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis RP62A Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles - Pairs Nonsporulating Yes 176279 NC_006663.1 Bac0002057 Staphylococcus epidermidis ATCC 12228 "Staphylococcus epidermidis ATCC 12228 is a Gram-positive, cocci-shaped bacterium, categorized as a facultative anaerobe and a chemoheterotroph that thrives in a temperature range of 30-37°C. This microorganism is a common inhabitant of human skin and mucosal surfaces, particularly in areas such as the epidermis, nose, and various body orifices. Its resilient nature allows it to colonize medical devices and prosthetic implants, making it an important player in biofilm formation. As a Gram-positive organism, S. epidermidis retains crystal violet dye, presenting a purple hue under the microscope. Its cocci shape contributes to its ability to form characteristic clusters reminiscent of grapes, which is a hallmark of the Staphylococcus genus. This organism’s facultative anaerobic nature permits it to metabolize energy both in the presence and absence of oxygen, adapting to various environments within the human host. Additionally, as a chemoheterotroph, it derives its energy from organic compounds, which it sources from human tissues and skin flora. Despite being a normal skin commensal, S. epidermidis can act as an opportunistic pathogen, especially in immunocompromised individuals or patients with implanted devices. Its ability to produce a polysaccharide biofilm makes it particularly adept at adhering to surfaces, which can lead to persistent infections. Notably, S. epidermidis is frequently involved in nosocomial infections, especially in patients with indwelling catheters and other foreign body implants. Its genetic adaptability also raises concerns regarding antibiotic resistance, highlighting the need for careful management in clinical settings." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis ATCC 12228 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles Nonsporulating Yes 176280 NC_005007.1 Bac0002058 Agrobacterium fabrum str. C58 "Agrobacterium fabrum str. C58 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25°C and requires aerobic conditions for growth. This microbe is known to inhabit a diverse range of environments, suggesting its adaptability to various ecological niches. ↵↵As a member of the Agrobacterium genus, A. fabrum str. C58 is particularly notable for its role in plant-microbe interactions, where it is widely studied for its ability to transfer genetic material to plants. This trait has significant implications for biotechnology, particularly in the fields of plant genetic engineering and agricultural biotechnology.↵↵The organism's aerobic nature indicates its reliance on oxygen for metabolic processes, which may influence its distribution in environments where oxygen availability varies. The capacity to thrive in multiple habitats highlights the potential versatility of A. fabrum str. C58, enabling it to survive in both natural and anthropogenically altered ecosystems. ↵↵Overall, the ecological adaptability and specific growth requirements of Agrobacterium fabrum str. C58 provide a foundation for understanding its interactions within various ecosystems, as well as its applications in sustainable agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium fabrum Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 176299 NC_003063.2 Bac0002059 Ancylobacter rudongensis "Ancylobacter rudongensis is a Gram-negative bacterium characterized by its rod-shaped morphology and an optimal growth temperature of 29.0 °C. This microbe is part of a diverse group of bacteria that are adapted to moderate temperature environments, suggesting a potential preference for mesophilic conditions. The Gram-negative nature of A. rudongensis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer specific advantages in its habitat, such as resistance to certain environmental stressors.↵↵The optimal growth temperature of 29.0 °C positions A. rudongensis within a range that is often found in various aquatic environments, including freshwater and marine ecosystems. This temperature preference may also provide insights into its ecological niche, possibly indicating a role in biogeochemical processes or microbial interactions within these habitats.↵↵Given its physiological traits, A. rudongensis may contribute to nutrient cycling in aquatic ecosystems, particularly in processes involving organic matter degradation. The ecological role of such microorganisms is crucial in maintaining the health and stability of their environments, highlighting their importance in microbial communities. Further research into its metabolic capabilities and interactions with other microbial species could elucidate additional ecological functions and contributions of A. rudongensis within its native habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Ancylobacter Ancylobacter rudongensis Gram-negative rod non-motile 29 mesophilic 177413 FMTP00000000.1 Bac0002060 Francisella tularensis subsp. tularensis SCHU S4 "Francisella tularensis is a non-motile, aerobic, rod-shaped Gram-negative bacterium and is the causative agent of tularemia. Tularemia can affect both humans and animals. The subspecies tularensis (Type A) and holarctica (Type B) are the ones most commonly associated with the human disease. Its natural hosts are rabbits, hares, beavers and other rodents, as well as flies and mosquitos. The disease can be transmitted by different ways: through scratches or bites from animals, through consumption of contaminated meat or water or through inhalation of bacteria. The symptoms developed by infected people directly reflect the mode of transmission: pneumonia-like illness for the airborne transmission; throat infection, stomach pain, diarrhea and vomiting for the gastrointestinal transmission; apparition of a sore at the entry point of the bacteria and swelling of the draining lymph nodes for transmission via skin wounds. Tularemia can be treated with antibiotics, but without therapy the mortality rate of respiratory tularemia can be as high as 5-30%. F.tularensis is very infectious and ten cells are sufficient to cause infection in humans. The bacterium can survive for weeks at low temperatures in water, soil or animal carcasses. During World War II, the use of F.tularensis as a biological weapon was studied by Japan, Soviet Union and USA. Strain WY96-3418 was isolated from a human finger wound in 1996. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Schu S4 Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Homo sapiens Singles Nonsporulating Yes 177416 NZ_CP010290.1 Bac0002061 Desulfotalea psychrophila LSv54 Desulfotalea psychrophila is a marine Gram-negative sulfate-reducing bacterium. It was isolated from permanently cold Arctic sediments off the coast of Svalbard. Its optimal growth temperature is 10 degrees Celsius but it is also able to grow at temperatures as low as -1.8 degrees Celsius. Psychrophilic sulfate-reducing bacteria are assumed to contribute significantly to the carbon and sulfur cycles.(From http://www.expasy.org/sprot/hamap/DESPS.html) (BacMap) Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfotalea Desulfotalea psychrophila Negative Rod Yes 1 2 Anaerobe 7 Psychrophilic Specialized Free living No 177439 NC_006138.1 Bac0002062 Flavobacterium omnivorum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium omnivorum 178355 FNDB00000000.1 Bac0002063 Leptospirillum ferriphilum str. DX Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferriphilum 178606 MPOJ00000000.1 Bac0002064 Carboxydocella thermautotrophica Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVI. Incertae Sedis Carboxydocella Carboxydocella thermautotrophica anaerobic 178899 NZ_CP028491.1 Bac0002065 Acetobacter cerevisiae Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter cerevisiae 178900 LHZA00000000.1 Bac0002066 Acetobacter malorum str. CECT 7742 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter malorum 178901 LVHD00000000.1 Bac0002067 Acetobacter malorum Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter malorum 178901 LHZC00000000.1 Bac0002068 Phormidium nigroviride PCC 7112 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Phormidium Phormidium nigroviride 179408 NC_019764.1 Bac0002069 Alicycliphilus denitrificans str. BQ1 "Alicycliphilus denitrificans strain BQ1 is a Gram-negative bacterium characterized by its facultative anaerobic metabolism, which allows it to thrive in both aerobic and anaerobic environments. This versatile metabolic capability suggests that A. denitrificans str. BQ1 can adapt to varying oxygen levels, potentially playing a role in biogeochemical cycles, particularly in environments where oxygen fluctuates.↵↵The Gram-negative nature of this microbe indicates the presence of an outer membrane containing lipopolysaccharides, which may contribute to its resistance to certain environmental stresses. The facultative lifestyle of A. denitrificans str. BQ1 enables it to utilize diverse electron acceptors for respiration, which may include nitrate, thus implicating its involvement in denitrification processes. This ability is significant in the context of nitrogen cycling, where the conversion of nitrates to nitrogen gas can help mitigate nitrogen pollution in various ecosystems.↵↵Overall, the unique metabolic traits of Alicycliphilus denitrificans str. BQ1 position it as a potentially important player in nutrient cycling, particularly in environments that experience variations in oxygen availability. Its adaptability underscores the ecological significance of facultative anaerobes in maintaining ecosystem balance and nitrogen integrity." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Alicycliphilus Alicycliphilus denitrificans Negative Yes 1 2 Facultative Mesophilic Free living 179636 NKDB00000000.2 Bac0002070 Burkholderia anthina Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia anthina 179879 LPFR00000000.1 Bac0002071 Cetobacterium ceti Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium ceti 180163 FUWX00000000.1 Bac0002072 Giesbergeria anulus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Giesbergeria Giesbergeria anulus aerobic 180197 FOGD00000000.1 Bac0002073 Delftia tsuruhatensis str. CM13 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia tsuruhatensis roots 180282 NZ_CP017420.1 Bac0002074 Morganella morganii subsp. morganii str. ATCC 25830 "Morganella morganii subsp. morganii str. ATCC 25830 is a Gram-negative, facultative anaerobic bacterium. This organism is characterized by its ability to thrive in both aerobic and anaerobic environments, which suggests a versatile metabolic capacity that may contribute to its adaptability in diverse ecological niches. As a member of the Enterobacteriaceae family, M. morganii subsp. morganii is typically rod-shaped, exhibiting the morphological and physiological traits common to this group of bacteria.↵↵The facultative anaerobic nature of M. morganii subsp. morganii indicates that it can utilize oxygen for respiration when available but can also switch to fermentation or anaerobic respiration in the absence of oxygen. This metabolic flexibility may allow it to colonize various environments, including those with fluctuating oxygen levels, such as the gastrointestinal tracts of animals or in decaying organic matter where oxygen is limited.↵↵Due to its Gram-negative cell wall structure, M. morganii subsp. morganii possesses an outer membrane that can confer resistance to certain antibiotics, a trait that is often observed in Gram-negative bacteria. This characteristic, combined with its facultative anaerobic capabilities, could play a role in its survival and persistence in competitive environments where it may encounter antimicrobial agents.↵↵Overall, the adaptability of Morganella morganii subsp. morganii str. ATCC 25830 to varying oxygen levels may provide insights into its ecological role in nutrient cycling and its interactions with other microbial communities in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Facultative anaerobe 180434 NZ_CP034944.1 Bac0002075 Bacillus thuringiensis serovar indiana str. HD521 "Bacillus thuringiensis serovar indiana strain HD521 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and its facultative anaerobic growth characteristics. This organism is primarily associated with hosts, indicating a potential relationship with living organisms, which may include plants or insects. ↵↵As a member of the Bacillus genus, B. thuringiensis HD521 is notable for its sporulation capability, allowing it to survive in adverse conditions through the formation of resilient spores. The facultative anaerobic nature of this strain suggests that it can thrive in both aerobic and anaerobic environments, providing it with metabolic flexibility that may enhance its survival and proliferation in diverse ecological niches.↵↵While the specific pathogenicity and ecological roles of B. thuringiensis HD521 are not detailed, its association with hosts hints at potential interactions that could be beneficial or detrimental to those hosts. This versatility in habitat and growth conditions may position B. thuringiensis HD521 as a significant player in microbial ecosystems, particularly in agricultural contexts where it may influence plant health or pest dynamics. Understanding the biological traits of this strain contributes to a broader comprehension of the ecological functions of Bacillus species in natural and managed environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 180850 NZ_CP010112.1 Bac0002076 Bacillus thuringiensis serovar guiyangiensis "Bacillus thuringiensis serovar guiyangiensis is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated environments. As a facultative anaerobe, it can adapt to varying oxygen levels, allowing it to inhabit diverse ecological niches. This bacterium is part of the Bacillus genus, which is characterized by its ability to form endospores, a trait that contributes to its survival in adverse conditions. ↵↵Bacillus thuringiensis serovar guiyangiensis has garnered interest primarily due to its association with various hosts, indicating a potential role in microbial interactions within these ecosystems. The sporulation capability of this species suggests a strategy for resilience, enabling it to persist in environments where nutrient availability may fluctuate. ↵↵While specific ecological roles or pathogenicity are not detailed here, the host-associated habitat points to a likely involvement in complex symbiotic or antagonistic relationships within its ecological community. This adaptability and survival strategy can provide insights into the evolutionary mechanisms that allow certain microbes to thrive alongside hosts, potentially influencing microbial diversity and function in host-associated microbiomes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 180871 NFCZ00000000.1 Bac0002077 Bacillus thuringiensis serovar pingluonsis "Bacillus thuringiensis serovar pingluonsis is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This microbe is typically found in host-associated environments, suggesting a potential relationship with specific organisms or ecological niches. As a sporulating bacterium, Bacillus thuringiensis serovar pingluonsis can form resilient spores, allowing it to survive in various environmental conditions until it encounters a suitable host or substrate for growth.↵↵The facultative anaerobic nature of this organism indicates that it can thrive in both aerobic and anaerobic conditions, which may enhance its adaptability to fluctuating oxygen levels in its habitat. This trait may play a crucial role in its survival and competitive ability within host-associated environments, where oxygen availability can vary significantly.↵↵While the specific ecological roles and interactions of Bacillus thuringiensis serovar pingluonsis remain to be fully elucidated, its presence in host-associated habitats suggests it may contribute to microbial communities in a manner similar to other Bacillus species, potentially influencing host health or microbial dynamics. Further investigation into its ecological interactions could provide valuable insights into its functional roles within these complex systems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 180881 NFDL00000000.1 Bac0002078 Bacillus thuringiensis serovar ostriniae "Bacillus thuringiensis serovar ostriniae is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, allowing it to survive in various environmental conditions. This species is classified as a facultative anaerobe, meaning it can grow in both aerobic and anaerobic environments, which enhances its adaptability to diverse habitats. Bacillus thuringiensis serovar ostriniae is predominantly host-associated, indicating a close relationship with specific hosts that may influence its life cycle and ecological role.↵↵The sporulation process of Bacillus thuringiensis serovar ostriniae is a key trait, as it enables the bacterium to produce resilient spores that can endure unfavorable conditions, thereby facilitating its persistence in host environments. This trait is particularly advantageous in agricultural contexts, where the bacterium may interact with various insect hosts.↵↵In addition to its survival strategies, the ecological significance of Bacillus thuringiensis serovar ostriniae may be reflected in its role within the microbial communities associated with its hosts. Its presence could potentially influence the dynamics of these communities, affecting nutrient cycling and interactions with other microbial species. Further research into the specific host associations and environmental interactions of this bacterium may reveal additional insights into its ecological impact and potential applications in biological control." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 180883 NFEJ00000000.1 Bac0002079 Bacillus thuringiensis serovar poloniensis "Bacillus thuringiensis serovar poloniensis is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and is classified as a facultative anaerobe. This microbe is primarily host-associated, indicating its presence in specific biological environments associated with living hosts. The facultative anaerobic nature of B. thuringiensis serovar poloniensis allows it to thrive in both aerobic and anaerobic conditions, which may enable it to colonize diverse habitats within its host organisms.↵↵In terms of its ecological role, B. thuringiensis serovar poloniensis is well-known for producing insecticidal crystal proteins during sporulation, which are effective against certain insect larvae. This characteristic not only emphasizes its potential utility in biological pest control but also suggests a specific evolutionary adaptation to survive and compete within host-associated environments. The ability to thrive in varying oxygen conditions, coupled with its sporulation capability, may provide this bacterium with a competitive advantage in fluctuating ecological niches. Understanding the specific interactions between B. thuringiensis serovar poloniensis and its host can provide further insights into its ecological significance and potential applications in agriculture and pest management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 180894 NFDJ00000000.1 Bac0002080 Pectobacterium brasiliense Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium brasiliense 180957 NZ_CP065031.1 Bac0002081 Pectobacterium brasiliense str. CFIA1033 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium brasiliense 180957 JPSO00000000.1 Bac0002082 Clostridium isatidis str. DSM 15098 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium isatidis anaerobic 182773 NZ_CP016786.1 Bac0002083 Haloarcula quadrata str. DSM 11927 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula quadrata 182779 RBWW00000000.1 Bac0002084 Proteus hauseri str. 15H5D-4a Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus hauseri 183417 NZ_CP026364.1 Bac0002085 Paracoccus seriniphilus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus seriniphilus 184748 FZQB00000000.1 Bac0002086 Varibaculum cambriense str. DNF00696 "Varibaculum cambriense str. DNF00696 is a Gram-positive, facultative anaerobic bacterium characterized by its ability to thrive in both aerobic and anaerobic environments. As a member of the Varibaculum genus, this strain presents a significant interest due to its metabolic versatility, allowing it to adapt to varying oxygen levels. The Gram-positive nature of this microbe suggests a robust cell wall structure, which may provide advantages in specific ecological niches where physical or environmental stresses are present.↵↵Facultative anaerobes like V. cambriense str. DNF00696 can utilize oxygen for respiration when available, but they are also capable of fermentative metabolism under anaerobic conditions. This adaptability implies the potential for survival in diverse habitats, including those where oxygen may fluctuate, such as in sedimentary environments or within the gastrointestinal tracts of various organisms.↵↵Understanding the ecological role of V. cambriense str. DNF00696 may provide insights into microbial community dynamics, particularly in environments where oxygen availability is variable. Its ability to utilize different metabolic pathways could influence nutrient cycling and the overall microbial community structure in its natural habitat. Further research into the specific environmental contexts and interactions of this strain may illuminate its contributions to ecosystem functioning." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Varibaculum Varibaculum cambriense Positive Facultative anaerobe 184870 LSDN00000000.1 Bac0002087 Butyrivibrio hungatei str. MB2003 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio hungatei rumen 185008 NZ_CP017830.1 Bac0002088 Mycobacterium parmense "Mycobacterium parmense is a rod-shaped bacterium that thrives optimally at a temperature of 32.0°C. This microbe is characterized by its non-spore-forming nature, distinguishing it from many other bacterial taxa that possess sporulation capabilities. As a member of the Mycobacterium genus, M. parmense is likely to share some metabolic and physiological traits common to this group, particularly its complex cell wall structure, which typically contains mycolic acids. ↵↵While specific ecological niches or pathogenicity data for Mycobacterium parmense are not provided, its optimal growth temperature suggests a possible adaptation to moderate environmental conditions. This temperature preference may indicate a role in specific ecological niches, such as in soil or decaying organic matter, where temperatures often hover around this range. Further studies could elucidate its interactions within microbial communities and its potential contributions to nutrient cycling in its habitat. The non-spore-forming trait may also imply a reliance on moisture and specific environmental conditions for survival, further influencing its ecological role. Overall, M. parmense represents an intriguing subject for studies focusing on the ecological dynamics of mycobacterial species in diverse environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium parmense rod non-motile 32 mesophilic non-spore-forming 185642 LQPO00000000.1 Bac0002089 Tenacibaculum skagerrakense str. DSM 14836 "Tenacibaculum skagerrakense strain DSM 14836 is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 32.0 °C. This organism is part of the genus Tenacibaculum, which is characterized by its unique morphological and physiological properties. ↵↵As a member of the Flavobacteriaceae family, T. skagerrakense exhibits traits typical of its relatives, including a preference for marine environments, although specific habitat details for this strain are not provided. The Gram-negative nature of this bacterium indicates a cell wall structure that includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a feature that may influence its interactions with other microorganisms and its response to environmental stresses.↵↵The optimal growth temperature of 32.0 °C suggests that T. skagerrakense is well-adapted to slightly elevated temperatures, potentially reflecting a niche within warmer marine environments. This temperature preference may also imply a relationship with specific ecological conditions, such as those found in estuaries or coastal regions where temperature fluctuations can occur.↵↵Overall, the traits of Tenacibaculum skagerrakense str. DSM 14836 suggest its potential role in marine ecosystems, possibly contributing to the degradation of organic matter or participating in nutrient cycling, although further research would be necessary to elucidate its specific ecological functions and interactions within its habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum skagerrakense Gram-negative rod 32 mesophilic 186571 SLXM00000000.1 Bac0002090 Microvirga subterranea str. DSM 14364 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga subterranea 186651 QQBB00000000.1 Bac0002091 Alkalilimnicola ehrlichii MLHE-1 "Alkalilimnicola ehrlichii MLHE-1. This chemoautotrophic strain was isolated from Mono Lake in California, which contains arsenic and has high pH and salt concentrations. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Alkalilimnicola Alkalilimnicola ehrlichii MLHE Negative Facultative anaerobe Aquatic 187272 NC_008340.1 Bac0002092 Roseibium aggregatum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Roseibium Roseibium aggregatum 187304 CXST00000000.1 Bac0002093 Pseudoalteromonas porphyrae str. UCD-SED14 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas porphyrae 187330 LHPH00000000.1 Bac0002094 Yersinia pestis KIM10+ "Yersinia pestis KIM10+ is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is nonsporulating. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Yersinia pestis KIM10+ is a heterotroph, obtaining its energy from organic compounds, and it optimally grows at a temperature of 28.0°C. ↵↵The versatility in habitat suggests that this strain can adapt to various ecological niches, potentially influencing its interactions within diverse microbial communities. Its facultative nature may also indicate a capacity to survive in fluctuating environmental conditions, which could have implications for its persistence in the environment and its potential transmission pathways. ↵↵Understanding the traits of Yersinia pestis KIM10+ provides insights into the adaptability and ecological role of this bacterium, highlighting its ability to occupy various ecological niches and its relevance in the study of microbial survival strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pestis Negative Rod Yes 1 2 Facultative 28 Heterotroph Mesophilic Multiple Free living Singles Nonsporulating 187410 NC_004088.1 Bac0002095 Methanothermobacter thermautotrophicus str. Delta H "Methanobacterium thermoautotrophicum is a strictly anaerobic rod-shaped archaebacterium which optimally lives at 65oC. These chemoautotrophs require only CO2, H2, and salts for growth.Cell walls appear to be Gram positive, but are composed of pseudomurein rather than peptidoglycan. They are non-motile and flagella are absent. Metabolism is strictly anaerobic and H2 and/or formate are used as an electron donor. All species grow with H2 and CO2 as a substrate for methanogenesis. Cells are mesophillic or thermophillic. All species fail to grow under aerobic conditions and most are acid tolerant (will grow at pH less than 5). There are 12 species of genus Methanobacterium and they have been isolated from aneraobic digestors, sewage sludge, manure, groundwater, and formation water of oil-bearing rocks. (From http://web.umr.edu/~microbio/BIO221_2002/Methanobacterium_thermoautotrophicum.htm) (BacMap)" Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter thermautotrophicus Delta H Rod No Anaerobe 65 Thermophilic Specialized 187420 NC_000916.1 Bac0002096 Paracidovorax valerianellae Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax valerianellae 187868 FMZC00000000.1 Bac0002097 Mitsuokella jalaludinii "Mitsuokella jalaludinii is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a Chemoheterotroph, and can be found in various body sites of animals, including the gastrointestinal tracts of humans, animals, and insects, as an Obligate Anaerobe. The Gram-negative characteristic indicates that the microbe's cell wall contains a thinner peptidoglycan layer and an outer lipid bilayer, which provides it with unique properties and resistance to certain environmental stresses. Its rod shape allows it to maintain a large surface area, facilitating the exchange of nutrients and waste products. As a mesophilic microbe, Mitsuokella jalaludinii grows best in moderate temperatures, typically between 20-40°C, making it well-suited to the conditions found in many animal hosts. As a Chemoheterotroph, Mitsuokella jalaludinii relies on organic compounds for energy and carbon, which it obtains by breaking down complex molecules into simpler ones. This metabolic strategy allows the microbe to thrive in environments where light is scarce, such as the gastrointestinal tract. The microbe's presence in various body sites of different species highlights its ability to adapt to diverse environments and hosts. As an Obligate Anaerobe, Mitsuokella jalaludinii requires the absence of oxygen to grow and survive, which is consistent with its habitat in the oxygen-poor environments of the gastrointestinal tract. Mitsuokella jalaludinii has been implicated in the degradation of complex polysaccharides, such as cellulose and xylan, which are abundant in plant cell walls, and its ability to produce volatile fatty acids as byproducts of fermentation has significant implications for the nutrition and health of its hosts." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Mitsuokella Mitsuokella jalaludinii Negative Anaerobe 187979 CYYU00000000.1 Bac0002098 Jannaschia helgolandensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Jannaschia Jannaschia helgolandensis 188906 FNZQ00000000.1 Bac0002099 Rossellomorea marisflavi str. JCM 11544 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Rossellomorea Rossellomorea marisflavi 189381 LGUE00000000.1 Bac0002100 Rossellomorea aquimaris str. 97B Bacillati Bacillota Bacilli Caryophanales Bacillaceae Rossellomorea Rossellomorea aquimaris 189382 QNRJ00000000.1 Bac0002101 Xanthomonas euvesicatoria pv. citrumelonis str. CFBP3371 "Xanthomonas euvesicatoria pv. citrumelonis str. CFBP3371 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, demonstrating optimal growth at 25.0°C. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. ↵↵As a member of the Xanthomonadaceae family, X. euvesicatoria pv. citrumelonis has been studied for its role in plant associations. Its Gram-negative cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane, often confers resistance to certain antibiotics and contributes to its adaptability in various ecological niches. The rod shape of this bacterium may influence its motility and colonization abilities, further affecting its interactions with host plants.↵↵The host-associated habitat of X. euvesicatoria pv. citrumelonis suggests a specialized ecological role, potentially involving symbiotic or pathogenic relationships with its hosts. This highlights the importance of understanding its growth conditions and metabolic requirements in the context of plant health and disease management. Such insights are crucial for developing effective strategies for controlling bacterial infections in agriculture, especially in crops susceptible to Xanthomonas species." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas euvesicatoria Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living 189396 MDCC00000000.1 Bac0002102 Paenibacillus graminis str. DSM 15220 "Paenibacillus graminis str. DSM 15220 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, indicating its potential resilience in various environmental conditions. As a chemoheterotroph, this microbe derives its energy from organic compounds, which it metabolizes in its natural habitat—soil. ↵↵The sporulation capability of P. graminis suggests an adaptive advantage, allowing it to survive periods of nutrient scarcity and unfavorable environmental conditions. This trait is particularly significant in soil ecosystems, where fluctuations in moisture and nutrient availability can be pronounced. ↵↵While specific ecological interactions of P. graminis str. DSM 15220 are not detailed, its presence in soil environments points to a potential role in nutrient cycling and organic matter decomposition, both critical processes in maintaining soil health and fertility. The ability to utilize a variety of organic substrates may enable this bacterium to contribute to the microbial diversity and functionality of the soil microbiome. ↵↵Overall, the traits of Paenibacillus graminis str. DSM 15220 highlight its potential significance in soil ecosystems, where it may play a role in enhancing soil structure and nutrient availability through its metabolic activities." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus graminis Positive Rod Yes 1 Chemoheterotroph Mesophilic Soil Sporulating 189425 NZ_CP009287.1 Bac0002103 Paenibacillus odorifer "Paenibacillus odorifer is a mesophilic, bacilli-shaped bacterium known for its distinctive chains of cells and its ability to sporulate under unfavorable conditions. As a facultative anaerobe, it can thrive in both oxygen-rich and oxygen-poor environments, making it adaptable to various habitats, including soil and plant surfaces. This bacterium is classified as a chemoheterotroph, deriving its energy from organic compounds, and is particularly noted for its role in acetate production and nitrogen fixation. Optimal growth occurs at a temperature of around 30°C, aligning with common environmental conditions where it is typically found. In terms of ecological significance, Paenibacillus odorifer contributes to soil fertility and plant health through its nitrogen-fixing capabilities, which enhance soil nutrient profiles and support plant growth. This bacterium not only enriches the soil but also participates in the complex interactions within microbial communities, influencing nutrient cycling and organic matter decomposition. The presence of such functional microbes underscores the importance of biodiversity in maintaining ecosystem resilience and productivity, highlighting the integral role of Paenibacillus odorifer in sustainable agricultural practices and soil management strategies." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus odorifer Positive Rod Yes 1 Facultative Anaerobe 30 Chemoheterotroph Mesophilic Multiple Chains Sporulating 189426 MPTN00000000.1 Bac0002104 Leptospira interrogans serovar Lai str. 56601 "Leptospira interrogans causes leptospirosis whose manifestations are fever, headache, malaise, myalgia, occasionally meningitidis, sometimes jaundice, renal insufficiency, anemia and hemorrhage of the skin. Rarely lethal. Worldwide spread except in polar regions. Contamination occurs through contact of the skin or mucous membranes with contaminated water, soil or vegetation or through direct contact with urine or tissues of infected animals. Farm and pet animals, including cattle, dogs, horses and swine, rats and other rodents act as the normal carrier host; wild animals, including deer, squirrels, foxes, skunks and even reptiles and amphibians may be infected. (HAMAP: LEPIC)" Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans 56601 Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated Yes 189518 NC_004343.2 Bac0002105 Bradyrhizobium sp. LMTR 3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. LMTR 3 189873 MAXC00000000.1 Bac0002106 Actinotignum urinale Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinotignum Actinotignum urinale anaerobic 190146 NZ_CP126967.1 Bac0002107 Caulobacter vibrioides CB15 "Caulobacter vibrioides CB15 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microorganism thrives in aquatic environments and has an optimal growth temperature of 35.0°C. As an aerobe, C. vibrioides CB15 requires oxygen for its metabolic processes, which is characteristic of many aquatic bacteria that engage in aerobic respiration to harness energy from organic compounds. ↵↵The singular arrangement of C. vibrioides CB15 cells may influence its interaction with the surrounding environment, potentially affecting its nutrient uptake and competition with other microorganisms. Its rod shape allows for a streamlined structure that may facilitate motility in liquid habitats, although specific motility mechanisms are not detailed in the provided traits. ↵↵C. vibrioides CB15 is notable for its role in aquatic ecosystems, where it may contribute to nutrient cycling and organic matter degradation. The combination of its aerobic metabolism and habitat suggests that this organism plays a significant role in the microbial community dynamics and may influence the availability of nutrients for other aquatic organisms. Understanding the traits of C. vibrioides CB15 can provide insights into its ecological functions and interactions within its aquatic habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides Negative Rod Yes 1 2 Aerobe 35 Mesophilic Aquatic Free living Singles 190650 NC_002696.2 Bac0002108 Legionella busanensis Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella busanensis microaerophile 190655 UGOD00000000.1 Bac0002109 Ralstonia insidiosa str. ATCC 49129 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia insidiosa 190721 NZ_CP016022.1 Bac0002110 Vibrio coralliilyticus Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio coralliilyticus "Nelly Bay Magnetic Island, Australia" 190893 NRHY00000000.1 Bac0002111 Methanobrevibacter gottschalkii Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter gottschalkii 190974 FOAK00000000.1 Bac0002112 Methanobrevibacter woesei str. DSM 11979 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter woesei 190976 MZGU00000000.1 Bac0002113 Rhodococcus aetherivorans str. BCP1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus aetherivorans 191292 AVAE00000000.1 Bac0002114 Pseudomonas palleroniana str. MAB3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas palleroniana 191390 NZ_CP025494.1 Bac0002115 Pseudomonas palleroniana Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas palleroniana 191390 LRMR00000000.1 Bac0002116 Sedimenticola selenatireducens Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Sedimenticolaceae Sedimenticola Sedimenticola selenatireducens 191960 PKUN00000000.1 Bac0002117 Neisseria sp. Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. facultative anaerobe oral cavity; submucosal sulcus 192066 RBKF00000000.1 Bac0002118 Allomuricauda sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Allomuricauda Allomuricauda sp. 192149 PARJ00000000.1 Bac0002119 Planococcus maritimus str. DSM 17275 "Planococcus maritimus str. DSM 17275 is a coccus-shaped bacterium that belongs to the genus Planococcus. This strain is noteworthy for its adaptation to marine environments, which is reflected in its physiological traits. Members of the Planococcus genus are generally known to thrive in saline conditions, suggesting that DSM 17275 may possess osmoregulatory capabilities that enable it to maintain cellular function in high-salinity habitats.↵↵The spherical morphology of Planococcus maritimus str. DSM 17275 is characteristic of many cocci, which can influence its interactions within microbial communities. While specific metabolic pathways and ecological roles of this strain have not been detailed, cocci often play significant roles in nutrient cycling and may contribute to the overall microbial diversity in their respective environments.↵↵Furthermore, the ability of cocci to form aggregates or biofilms can enhance their resilience in fluctuating marine conditions, promoting survival in competitive microbial ecosystems. Understanding the ecological implications of Planococcus maritimus str. DSM 17275 within its marine niche may provide insights into the adaptive mechanisms of bacterial life in extreme environments, highlighting the diverse evolutionary strategies employed by microorganisms in response to saline stresses." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus maritimus Cocci 192421 NZ_CP016538.2 Bac0002120 Planococcus maritimus str. MKU009 "Planococcus maritimus str. MKU009 is a halophilic, coccoid bacterium belonging to the family Planococcaceae. This strain exhibits a spherical shape, which is characteristic of the genus Planococcus. As a member of the marine microbiome, P. maritimus str. MKU009 is adapted to thrive in saline environments, although specific details regarding its optimal salt concentration remain to be elucidated.↵↵The coccoid morphology of P. maritimus str. MKU009 suggests potential implications for its role in microbial community dynamics, particularly in marine ecosystems where spherical cells may influence nutrient cycling and interactions with other microbial taxa. The physiological traits associated with halophilic bacteria, such as the ability to maintain osmotic balance and stability in high-salinity conditions, may provide insights into its survival mechanisms and ecological functions in salty habitats.↵↵While further studies are needed to fully understand its metabolic capabilities and interactions with the surrounding environment, the presence of P. maritimus str. MKU009 in marine settings highlights the diversity of microbial life adapted to extreme conditions. This strain may play a role in biogeochemical processes, such as the degradation of organic matter or the cycling of nutrients in saline waters, showcasing the importance of halophilic microbes in maintaining ecological balance in marine ecosystems." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus maritimus Cocci 192421 LTZG00000000.1 Bac0002121 Pseudozobellia thermophila "Pseudozobellia thermophila is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microorganism is optimally adapted to thrive at a temperature of 25.0°C, indicating a preference for moderate thermal environments. Its Gram-negative status suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may influence its interactions with the surrounding environment.↵↵As an aerobic organism, Pseudozobellia thermophila requires oxygen for growth and metabolism, which may limit its habitat to well-oxygenated niches. The combination of its morphological traits and growth conditions suggests that this bacterium could play a significant role in the microbial ecology of environments where these conditions prevail, such as in marine or freshwater ecosystems where organic matter decomposition occurs.↵↵The absence of sporulation indicates that Pseudozobellia thermophila relies on alternative survival strategies in response to environmental stressors. This may include the ability to rapidly adapt to changes in nutrient availability or fluctuations in oxygen levels. Understanding the metabolic pathways and ecological roles of Pseudozobellia thermophila can provide insights into its potential contributions to biogeochemical cycles, particularly in oxygen-rich environments where it may participate in the degradation of organic substrates." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Pseudozobellia Pseudozobellia thermophila Gram-negative rod motile aerobic 25 mesophilic non-spore-forming 192903 FQYU00000000.1 Bac0002122 Salmonella enterica subsp. enterica serovar Mbandaka "Salmonella enterica subsp. enterica serovar Mbandaka is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form both single cells and chains. This serovar thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within host organisms. As a chemoorganotroph, S. enterica serovar Mbandaka utilizes organic compounds as its energy source, indicating a metabolic adaptability that supports its survival in host-associated environments.↵↵The microbe's habitat is predominantly linked to its association with various hosts, which may provide insights into its ecological role within the microbiome of these organisms. The presence of this serovar in host-associated environments suggests a potential for interaction with host immune systems and other microbial inhabitants, although the specific implications of these interactions remain to be fully understood. Furthermore, its microaerophilic nature implies that S. enterica serovar Mbandaka may occupy niches within the host where oxygen levels are limited, which could influence its competitive dynamics with other microbial species. The ability of this bacterium to thrive in such specialized conditions underscores its ecological significance and potential adaptability in diverse biological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 192954 QYWQ00000000.1 Bac0002123 Salmonella enterica subsp. enterica serovar Kentucky "Salmonella enterica subsp. enterica serovar Kentucky is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This serovar thrives optimally at a temperature of 37.0 degrees Celsius, which aligns with the typical body temperature of its host organisms. As a chemoorganotroph, S. enterica serovar Kentucky utilizes organic compounds as its primary energy source, indicating a dependence on host-associated environments for survival and growth. ↵↵The microaerophilic nature of this bacterium suggests that it requires reduced levels of oxygen for its metabolic processes, a trait that may confer advantages in specific niches within host organisms where oxygen concentrations are limited. Given its habitat is host-associated, this serovar is likely to be found in a variety of animal hosts, where it can interact with the host's microbiota and immune systems. ↵↵An intriguing ecological insight into S. enterica serovar Kentucky is its potential role in the microbial dynamics of the gut environment, where its growth under microaerophilic conditions may allow it to coexist with other gut microorganisms while potentially influencing the overall microbial community structure and function. This adaptability may contribute to its persistence in host-associated habitats, suggesting a complex interplay between the bacterium and its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 192955 SMPO00000000.1 Bac0002124 Sinorhizobium americanum str. CFNEI 73 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium americanum 194963 NZ_CP013108.1 Bac0002125 Ectothiorhodospira mobilis Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Ectothiorhodospira Ectothiorhodospira mobilis anaerobic 195064 FOUO00000000.1 Bac0002126 Halobacillus karajensis "Halobacillus karajensis is a Gram-positive, rod-shaped bacterium that is known for its spore-forming capabilities. This microbe thrives in aerobic environments, with an optimal growth temperature of 37.0°C. Its ability to form spores allows it to endure extreme conditions, which may contribute to its resilience in various habitats. ↵↵Being a member of the Bacillus genus, Halobacillus karajensis exhibits characteristics typical of this group, including its positive Gram staining and rod morphology. The bacterium's aerobic nature suggests it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms in its environment.↵↵The spore-forming ability of Halobacillus karajensis not only aids in its survival but may also play a role in nutrient cycling within its habitat. This trait allows the bacterium to persist during unfavorable conditions, potentially serving as a key player in maintaining microbial diversity in environments where it is found. Overall, Halobacillus karajensis exemplifies the adaptations of microorganisms to thrive in specific ecological contexts, highlighting the intricate relationships within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus karajensis Gram-positive rod non-motile aerobic 37 mesophilic spore-forming 195088 CCDI000000000.1 Bac0002127 Clostridium perfringens str. 13 "Clostridium perfringens str. 13 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments, demonstrating a preference for mesophilic temperatures, making it active between 20°C and 45°C. As a heterotroph, it obtains its nutrients by decomposing organic matter, primarily carbohydrates and proteins. This microbe is predominantly found in the gastrointestinal tracts of various animals, including humans, and can also inhabit soil, sediments, and decaying organic material. The Gram-positive nature of C. perfringens str. 13 is characterized by a thick peptidoglycan layer in its cell wall, which contributes to its resilience in harsh conditions. Its rod-like shape allows for efficient movement and colonization in nutrient-rich environments, making it capable of rapid growth under suitable conditions. As a mesophilic organism, it adapts well to body temperatures, which is particularly significant for its role in human and animal health. C. perfringens str. 13 is classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen. This characteristic is crucial for its pathogenicity, as it thrives in the anaerobic environments of deep tissue infections, such as gas gangrene, where it produces potent toxins. Its heterotrophic metabolism enables it to efficiently utilize the nutrients available in host tissues. In addition to its role in human disease, Clostridium perfringens is also notable for its ability to produce spores that can survive extreme environmental conditions. These spores can lead to foodborne illness, particularly in improperly cooked meats, emphasizing the importance of food safety practices. The microbe's diverse metabolic capabilities and ecological versatility underline its significance in both health and environmental contexts." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens 13 Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Singles - Pairs - Chains Sporulating Yes 195102 NC_003366.1 Bac0002128 Haematobacter massiliensis str. OT1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Haematobacter Haematobacter massiliensis 195105 NZ_CP035511.1 Bac0002129 Picosynechococcus sp. PCC 7117 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus Picosynechococcus sp. PCC 7117 195498 NZ_CP016477.1 Bac0002130 Thermococcus nautili str. 30-1 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus nautili 195522 NZ_CP007264.1 Bac0002131 Xanthomonas arboricola pv. juglandis str. DW3F3 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 195709 PNRC00000000.1 Bac0002132 Aeromonas hydrophila subsp. hydrophila "Aeromonas hydrophila subsp. hydrophila is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This organism demonstrates a facultative aerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments. As a heterotroph, A. hydrophila subsp. hydrophila relies on organic compounds for energy, which is consistent with its adaptability to diverse habitats, including freshwater and brackish environments.↵↵The optimal growth temperature for A. hydrophila subsp. hydrophila is approximately 22.0 °C, indicating a preference for temperate conditions. This temperature preference may reflect its ecological adaptability, enabling it to inhabit a range of aquatic environments where temperatures fluctuate seasonally. The versatile nature of A. hydrophila subsp. hydrophila not only underscores its ecological resilience but also suggests its potential role in nutrient cycling within its habitats.↵↵Given its diverse habitat and growth characteristics, A. hydrophila subsp. hydrophila may contribute significantly to the microbiota of aquatic ecosystems, where it could play roles in organic matter degradation and the maintenance of ecological balance. Understanding its physiological traits can provide insights into its ecological functions and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 196023 NZ_CP028567.2 Bac0002133 Corynebacterium efficiens YS-314 "Coryneform bacteria are rod-shaped, fast growing, non-sporulating Gram-positive bacteria that enjoy widespread distribution. Corynebacteria are used commercially to produce amino acids. Since the discovery, in the 1950s, that these bacteria could produce large amounts of glutamic acid, researchers have genetically modified strains to increase their yields.Phylogenetic studies, based on 16S rDNA analysis, demonstrated that three strains formed a distinct cluster within the genus Corynebacterium, and that their nearest relatives were Corynebacterium glutamicum and Corynebacterium callunae, also known as glutamic-acid-producing species. The data from 16S rDNA sequence and DNA-DNA related studies clearly indicated that the three isolates represented a new species within the genus Corynebacterium. All of the isolates could grow at 45C and produced acid from dextrin. On the basis of this data it was proposed that the three glutamic-acid-producing isolates together be classified as Corynebacterium efficiens sp. nov.Worldwide there is a huge demand for Monosodium-glutamate (MSG) as a flavour enhancer, in 1996 worldwide production exceeded 1 million tonnes and much of it is produced using Corynebacterium. This causes a problem in that the amount of heat generated kills the bacterium unless complicated cooling systems are installed. In Japanese trials evidence has shown that C. efficiens can produce MSG at a temperature of 45C, this could result in more efficient and cheaper production. (From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium efficiens YS-314 Positive Rod No 1 1 Facultative aerobe 30 Chemoorganotroph Mesophilic Multiple Free living Singles Nonsporulating No 196164 NC_004369.1 Bac0002134 Nostoc sp. HK-01 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. HK-01 196308 AP018323.1 Bac0002135 Caballeronia sordidicola str. PAMC 26510 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia sordidicola 196367 NBTY00000000.1 Bac0002136 Vibrio vulnificus YJ016 "Vibrio vulnificus is a lactose-fermenting, halophilic, gram-negative, opportunistic pathogenic bacterium from the same family as those that cause cholera. It normally lives in warm seawater and is part of a group of vibrios that are called ""halophilic"" because they are salt requiring organisms.This organism causes wound infections, gastroenteritis, or a syndrome known as primary septicemia.Found in warm coastal waters, this bacterium is related to the cholera pathogen and can cause a severe and potentially fatal illness. Infections tend to occur through eating raw or improperly cooked shellfish, particularly oysters. The ingestion of V. vulnificus by healthy individuals can result in gastroenteritis. The ""primary septicemia"" form of the disease can follow.Wound infections result either from contaminating an open wound with sea water harboring the organism, or by lacerating part of the body on coral, fish, etc., followed by contamination with the organism.Persons who are immunocompromised, especially those with chronic liver disease, are more at risk from Vibrio vulnificus. There is no evidence for person-to-person transmission.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus YJ016 Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Homo sapiens Singles Nonsporulating Yes 196600 NC_005128.1 Bac0002137 Staphylococcus aureus subsp. aureus MW2 "Staphylococcus aureus subsp. aureus MW2 is a gram-positive cocci bacterium that exhibits a staphylococcal arrangement, thrives optimally at temperatures around 37°C, is classified as a chemoheterotroph, and is a facultative anaerobe. This versatile microbe typically colonizes human skin and mucosal surfaces, including the nose, throat, and genitourinary tract, while also being associated with various infections in multiple body sites such as wounds, the bloodstream, respiratory tract, and bones. As a gram-positive organism, S. aureus MW2 retains crystal violet during the Gram staining process, resulting in a purple coloration indicative of its thick peptidoglycan cell wall. Its cocci shape allows for its characteristic formation into clusters, resembling bunches of grapes, which is a hallmark of staphylococci. The optimal growth temperature aligns with the human body temperature, facilitating its survival and proliferation within the host. Being a chemoheterotroph, S. aureus MW2 relies on organic compounds for both energy and carbon, which it derives from various substrates in its environment. This metabolic flexibility enables it to thrive in diverse environments, whether on skin or in other nutrient-rich niches. As a facultative anaerobe, it can grow in the presence or absence of oxygen, allowing it to switch between aerobic and anaerobic respiration based on environmental conditions. S. aureus MW2 is particularly noteworthy due to its ability to produce a wide array of virulence factors, including toxins and enzymes, which contribute to its pathogenicity. It is also known for its resistance to many antibiotics, making infections caused by this strain challenging to treat. The emergence of MRSA (Methicillin-resistant Staphylococcus aureus) strains, including MW2, raises significant public health concerns as these infections can lead to severe medical complications. Understanding this bacterium's behavior and resistance mechanisms is crucial for effective treatment and prevention strategies." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus MW2 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles Nonsporulating 196620 NC_003923.1 Bac0002138 Thermosynechococcus vestitus BP-1 "Thermosynechococcus vestitus BP-1 is a rod-shaped, photoautotrophic cyanobacterium that exhibits optimal growth at a temperature of 55.0°C. This organism is known to thrive in specialized habitats, suggesting a niche adaptation that may be linked to its thermal preferences and metabolic capabilities. As a photosynthetic microbe, T. vestitus BP-1 utilizes light energy to drive the conversion of carbon dioxide into organic compounds, positioning it as a key player in certain high-temperature aquatic ecosystems.↵↵The ability of T. vestitus BP-1 to flourish at elevated temperatures indicates potential adaptations in its photosynthetic machinery, which may include specialized pigments or enzymes that maintain functionality under heat stress. The specificity of its habitat further implies ecological interactions that could be unique to environments characterized by high thermal gradients, such as geothermal springs or hydrothermal vents.↵↵Understanding the physiological traits and ecological role of T. vestitus BP-1 can provide insights into the evolutionary adaptations of microorganisms to extreme environments, as well as their potential contributions to biogeochemical cycles in thermophilic ecosystems." Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Thermosynechococcaceae Thermosynechococcus Thermosynechococcus vestitus Rod No 1 2 55 Photosynthetic - Photoautotroph Thermophilic Specialized Free living 197221 NC_004113.1 Bac0002139 Streptococcus pasteurianus str. WUSP067 "Streptococcus pasteurianus str. WUSP067 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolic capabilities. This bacterium is characterized by its spherical shape, which is typical of the Streptococcus genus. As a chemoheterotroph, S. pasteurianus str. WUSP067 derives its energy and carbon from organic compounds, suggesting a reliance on complex organic materials for growth and metabolism. ↵↵The absence of sporulation indicates that this strain does not have the ability to form spores, a trait that can influence its survival strategies and ecological interactions. Given its Gram-positive nature, S. pasteurianus str. WUSP067 likely possesses a thick peptidoglycan layer in its cell wall, which is a hallmark of this group of bacteria. This structural feature may impart certain advantages in terms of resistance to environmental stressors compared to Gram-negative organisms.↵↵While specific ecological roles and interactions for S. pasteurianus str. WUSP067 have not been detailed, its metabolic strategy suggests it may participate in organic matter degradation in its environment. This capability could position it as a contributor to nutrient cycling, especially in environments rich in organic substrates. Further investigation into its ecological niche may reveal insights into its role in microbial community dynamics and its potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pasteurianus Positive Cocci No 1 Chemoheterotroph Nonsporulating 197614 NZ_CP039457.1 Bac0002140 Aeromonas salmonicida subsp. masoucida str. RFAS1 "Aeromonas salmonicida subsp. masoucida str. RFAS1 is a Gram-negative, rod-shaped bacterium recognized for its heterotrophic metabolism, utilizing organic compounds as energy sources. This strain thrives in aquatic environments, reflecting its adaptation to life in water and potentially influencing its interactions with other microorganisms and aquatic organisms. As a facultative anaerobe, RFAS1 can grow in both the presence and absence of oxygen, enabling it to exploit a variety of ecological niches within aquatic habitats that may experience fluctuating oxygen levels.↵↵The versatility in energy acquisition and oxygen utilization suggests that A. salmonicida subsp. masoucida str. RFAS1 plays a significant role in nutrient cycling within its ecosystem. Its heterotrophic nature indicates a reliance on organic matter, which may position it as an important player in the decomposition processes and the maintenance of microbial diversity in aquatic systems. This adaptability to varying environmental conditions underscores the ecological significance of this strain within its habitat, potentially impacting the dynamics of microbial communities and the overall health of aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 197700 NZ_CP017145.1 Bac0002141 Muricoccus roseus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Muricoccus Muricoccus roseus 198092 FQZF00000000.1 Bac0002142 Azoarcus sp. CIB Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Azoarcus Azoarcus sp. CIB 198107 NZ_CP011072.1 Bac0002143 Shigella flexneri 2a str. 301 "Shigella is a Gram-negative, non-sporulating, facultative anaerobe bacterium that causes dysentery or shigellosis in man. Shigella are highly invasive in the colon and the rectum, and are able to proliferate in the host cell cytoplasm, triggering an inflammatory reaction. Shigella was recognized as the etiologic agent for bacillary dysentery in the 1890's, and adopted as a genus in the 1950's and subgrouped into four species. However, a recent genetic study argues that Shigella emerged from multiple independent origins of E.coli 35'000-270'000 years ago and may not constitute a genus. Comparison of 20 E.coli/Shigella strains shows the core genome to be about 2000 genes while the pan-genome has over 18,000 genes. There are multiple, striking integration hotspots that are conserved across the genomes, corresponding to regions of abundant and parallel insertions and deletions of genetic material. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri 301 Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Pairs-Singles Nonsporulating Yes 198214 NC_004851.1 Bac0002144 Erythrobacter sanguineus Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sanguineus 198312 FRDF00000000.1 Bac0002145 Anoxybacillus gonensis str. DT3-1 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus gonensis 198467 ANMT00000000.1 Bac0002146 Anoxybacillus gonensis str. G2 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus gonensis 198467 JRZG00000000.1 Bac0002147 Macrococcus lamae Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus lamae 198484 SCWB00000000.1 Bac0002148 Pseudomonas jinjuensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas jinjuensis aerobic 198616 FNIJ00000000.1 Bac0002149 Pseudomonas koreensis str. A9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 MKWS00000000.1 Bac0002150 Pseudomonas koreensis str. CRS05-R5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 NZ_CP015852.1 Bac0002151 Pseudomonas koreensis str. D26 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 NZ_CP014947.1 Bac0002152 Persephonella hydrogeniphila Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Persephonella Persephonella hydrogeniphila 198703 OBEI00000000.1 Bac0002153 Pseudomonas syringae pv. lapsa "Pseudomonas syringae pv. lapsa is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates an aerobic metabolism, relying on a heterotrophic energy source. This microbe is known to inhabit various environments, which suggests a degree of ecological versatility that may facilitate its survival in diverse habitats.↵↵As an aerobic organism, Pseudomonas syringae pv. lapsa requires oxygen for its metabolic processes, which aligns with the attributes of many Pseudomonas species known for their adaptability to aerobic conditions. The heterotrophic lifestyle of this bacterium indicates that it plays a role in the degradation of organic materials within its ecosystems, potentially contributing to nutrient cycling.↵↵The ability to thrive in multiple habitats may be indicative of its ecological resilience, allowing Pseudomonas syringae pv. lapsa to exploit a range of substrates for growth and survival. This adaptability may also position it as an important player in the microbial communities of soil and plant-associated environments, where its presence can influence the dynamics of nutrient availability and microbial interactions. Understanding the ecological roles of such bacteria could provide insights into their contributions to ecosystem functioning and health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 199201 RBNO00000000.1 Bac0002154 Escherichia coli CFT073 "Escherichia coli CFT073 is a mesophilic microbe, preferring temperatures between 20°C and 40°C, and is classified as a heterotroph, meaning it utilizes organic compounds as its energy source. This microbe is incapable of producing its own food through photosynthesis, relying instead on the breakdown of existing organic matter. Its energy production is primarily attributed to the breakdown of glucose, which is converted into ATP through cellular respiration. Gram-staining of E. coli CFT073 reveals a characteristic Gram-negative cell, consisting of an outer membrane and a thin peptidoglycan layer. The bacterium's shape is rod-shaped, also known as bacillary, with rounded ends. As a ubiquitous microbe, E. coli CFT073 can be found inhabiting various body sites, including the gastrointestinal tract of animals and humans, as well as soil, water, and plant surfaces. In terms of oxygen preference, E. coli CFT073 is a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. Additionally, it exhibits aerotolerance, allowing it to survive in environments with varying oxygen levels. This adaptability allows the microbe to thrive in a range of ecological niches, from the aerobic environments of the human gut to the anaerobic environments of soil and water. Lastly, it's worth noting that E. coli CFT073 is commonly used as a model organism in scientific research, particularly in the study of urinary tract infections. Its ability to form biofilms on bladder and kidney surfaces makes it a significant pathogen in human health, and its genetic tractability has facilitated the discovery of novel therapeutic targets." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli CFT073 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 199310 NC_004431.1 Bac0002155 Microbacterium paraoxydans "Microbacterium paraoxydans is a Gram-positive, rod-shaped bacterium that thrives optimally in moderate temperatures, categorizing it as a mesophile. This microbe is classified as a chemoheterotroph, relying on organic compounds for energy and carbon, and is known to be an obligate aerobe, requiring oxygen for its metabolic processes. The Gram-positive nature of M. paraoxydans indicates a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and stability in various environments. Its rod shape allows for efficient nutrient uptake and motility, while the mesophilic temperature preference suggests an optimal growth range of 20-45°C, making it well-suited for human-associated environments and various ecological niches. As a chemoheterotroph, M. paraoxydans metabolizes organic substrates, which can include sugars and amino acids, positioning it as a versatile organism in nutrient recycling within its ecosystem. M. paraoxydans has been isolated from diverse body sites in humans, including skin, respiratory tracts, and even blood, indicating its potential as a commensal organism, though it can also be implicated in opportunistic infections. Its status as an obligate aerobe highlights its requirement for oxygen, which is critical for the oxidative phosphorylation process that generates ATP, the energy currency of cells. Beyond its basic characteristics, M. paraoxydans demonstrates unique biochemical capabilities, such as the degradation of pollutants and the potential to participate in bioremediation strategies. This versatility not only underscores its ecological importance but also its potential utility in biotechnology, particularly in developing sustainable processes for environmental cleanup." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium paraoxydans Positive Aerobe 199592 NZ_LT629770.1 Bac0002156 Plantibacter elymi Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter elymi (nom. nud.) 199708 FXWJ00000000.1 Bac0002157 Plantibacter cousiniae Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter cousiniae (nom. nud.) 199709 FUZO00000000.1 Bac0002158 Nitrosospira sp. Nl5 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. Nl5 200120 FMVQ00000000.1 Bac0002159 Nitrosomonas sp. Nm58 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Nm58 200126 FNPQ00000000.1 Bac0002160 Deinococcus aerius str. TR0125 "Deinococcus aerius strain TR0125 is a spherical, non-spore-forming bacterium that exhibits aerobic respiration and thrives optimally at a temperature of 29.0°C. This organism is part of the Deinococcus genus, which is known for its resilience to extreme environmental conditions, although specific resistance traits for TR0125 are not detailed in the available data.↵↵As an aerobic microbe, D. aerius TR0125 likely relies on oxygen for its metabolic processes, which may influence its ecological niche, possibly favoring environments with ample oxygen availability. The spherical morphology of this strain may confer certain advantages in terms of surface-to-volume ratio, potentially optimizing nutrient uptake and metabolic efficiency.↵↵The identification of optimal growth conditions, such as the specific temperature of 29.0°C, suggests that D. aerius TR0125 may thrive in moderately warm environments, which could include various terrestrial or atmospheric niches. This temperature preference may further indicate a potential adaptation to specific ecological settings, where it may play a role in microbial communities or biogeochemical cycles under aerobic conditions.↵↵Overall, the characteristics of Deinococcus aerius TR0125 highlight the adaptability of this organism, suggesting it may be well-suited to environments that experience fluctuations in temperature and oxygen levels, thereby contributing to its ecological resilience. Further investigation into its metabolic pathways and interactions in its native habitat could provide deeper insights into its ecological roles and survival strategies." Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aerius sphere non-motile aerobic 29 mesophilic non-spore-forming 200253 BFAG00000000.1 Bac0002161 Lentzea flaviverrucosa Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea flaviverrucosa 200379 FOFT00000000.1 Bac0002162 Pseudomonas poae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas poae 200451 MOAY00000000.1 Bac0002163 Pseudomonas poae str. A2-S9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas poae 200451 PDJN00000000.1 Bac0002164 Paraliobacillus ryukyuensis str. DSM 15140 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Paraliobacillus Paraliobacillus ryukyuensis 200904 QNRI00000000.1 Bac0002165 Planococcus rifietoensis str. M8 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus rifietoensis 200991 NZ_CP013659.2 Bac0002166 Planifilum fimeticola str. DSM 44946 "Planifilum fimeticola str. DSM 44946 is a Gram-positive, spore-forming bacterium that thrives in aerobic environments, with an optimal growth temperature of 45.0°C. This thermal preference suggests that P. fimeticola may inhabit warm niches, potentially including compost or other thermophilic ecosystems where organic material is decomposed. ↵↵The Gram-positive nature of this microbe indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in fluctuating environmental conditions often encountered in high-temperature habitats. The ability to form spores is significant for survival, allowing the organism to withstand adverse conditions, such as nutrient depletion or extreme temperatures, thus enhancing its ecological persistence.↵↵Given its aerobic requirement, P. fimeticola likely plays a role in the degradation of organic matter in environments where oxygen is readily available, possibly facilitating nutrient cycling in its habitat. The traits of this strain underline its potential utility in biotechnological applications, particularly in waste management and composting processes, where thermophilic and aerobic microorganisms are essential for efficient decomposition. Understanding the specific metabolic pathways and ecological interactions of Planifilum fimeticola could provide insights into its role in promoting soil health and sustainability." Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Planifilum Planifilum fimeticola Gram-positive aerobic 45 thermophilic spore-forming 201975 PVNE00000000.1 Bac0002167 Listeria ivanovii subsp. londoniensis str. WSLC 30167 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria ivanovii 202752 NZ_CP009575.1 Bac0002168 Zooshikella ganghwensis str. VG4 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Zooshikellaceae Zooshikella Zooshikella ganghwensis 202772 NDXW00000000.1 Bac0002169 Acinetobacter bouvetii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bouvetii 202951 SGSU00000000.1 Bac0002170 Acetivibrio thermocellus ATCC 27405 "Acetivibrio thermocellus ATCC 27405 is a Gram-positive, rod-shaped bacterium known for its unique ability to thrive as an anaerobic chemoorganotroph at an optimal temperature of 60.0 °C. This microbe exhibits versatile cell arrangements, occurring in pairs, singles, and chains, which may facilitate its adaptation to various environments. ↵↵A. thermocellus is primarily found in diverse habitats, where it plays a significant role in the breakdown of organic materials under anaerobic conditions. Its metabolic capabilities suggest a specialized niche in environments rich in organic substrates, where it can efficiently utilize available resources for energy. The organism's heat tolerance, coupled with its anaerobic lifestyle, indicates its potential importance in thermophilic fermentative processes, such as those occurring in thermophilic anaerobic digesters or in natural hot springs where organic matter decomposition is key.↵↵The unique traits of A. thermocellus underscore its potential utility in biotechnological applications, particularly in bioenergy production and biomass conversion processes. As research continues, understanding the specific metabolic pathways and interactions of A. thermocellus within its habitat may further elucidate its ecological roles and enhance its applications in sustainable practices, such as converting lignocellulosic biomass into renewable energy sources." Bacillati Bacillota Clostridia Acetivibrionales Acetivibrionaceae Acetivibrio Acetivibrio thermocellus Positive Rod Yes 1 Anaerobe 60 Chemoorganotroph Thermophilic Multiple Free living Pairs - Singles - Chains 203119 NC_009012.1 Bac0002171 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 "Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 is a gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites of numerous species, including the gastrointestinal tract, oral cavity, and skin of humans, animals, and even plants. As a facultative anaerobe, this microbe can survive in both aerobic and anaerobic environments, allowing it to adapt to different conditions.The gram-positive characteristic of Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 indicates the presence of a thick peptidoglycan layer in its cell wall, providing resistance to certain environmental stresses. Its cocci shape enables it to withstand various physical forces and promotes cell-to-cell interaction. As a mesophilic microbe, it grows optimally at moderate temperatures, typically between 20-45°C, making it well-suited for a wide range of environments. As a chemoheterotroph, Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones for nutrition. This metabolic versatility allows it to inhabit diverse ecosystems, from soil and water to the guts of various organisms. The microbe's ability to thrive in different body sites of various species is a testament to its adaptability and potential for symbiotic relationships. Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 plays a significant role in the production of fermented foods, such as sauerkraut, kefir, and kimchi, where it contributes to the development of flavor, texture, and nutritional content. Its ability to produce antimicrobial compounds, like bacteriocins, also makes it a subject of research for potential applications in food preservation and biomedical fields." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc mesenteroides ATCC 8293 Positive Cocci No 1 1 Facultative anaerobe 20 Mesophilic Multiple Free living Singles - Chains - Pairs No 203120 NC_008531.1 Bac0002172 Saccharophagus degradans 2-40 "Saccharophagus degradans (strain 2-40), formerly known as Microbulbifer degradans, is a Gram-negative, pleomorphic, aerobic, rod shaped, and motile bacterium. It belongs to a recently discovered group of marine bacteria that degrade and recycle complex carbohydrates. It was originally isolated from the salt marsh cord grass, Spartina alterniflora, in the Chesapeake Bay watershed. Saccharophagus degradans contains degradative surface protuberances, containing what is collectively termed hydrolosomes. The chitinase, agarase and alginase produced by S.degradans are not exported into the extracellular medium but are localized in these surface protuberances. Thanks to these protuberances, it is able to recycle a multitude of ICP (insoluble complex polysaccharides) including agar, chitin, alginic acid, carrageenan, cellulose, B-glucan, laminarin, pectin, pullulan, starch, and xylan. Agricultural, aquacultural, and algalcultural wastes threaten to become an increasingly serious problem. The wastes are mostly recalcitrant complex carbohydrates, namely cellulose, chitin and agar. The degradative protuberances of S.degradans may become important bioremediation tools, using them as concentrated, organized, protective enzyme packets. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Saccharophagus Saccharophagus degradans 2-40 Negative Rod Yes 1 2 Aerobe 4 heterotroph Mesophilic Aquatic Free living No 203122 NC_007912.1 Bac0002173 Oenococcus oeni PSU-1 "Oenococcus oeni (formerly called Leuconostoc oenos) is a lactic acid bacterium that occurs naturally in fruit mashes and related habitats. A facultative anaerobe, it is one of the most acid- and alcohol tolerant of the lactic acid bacteria. It is employed in wineries to carry out the malolactic conversion, an important secondary fermentation in the production of wine. This strain (BAA-331 / PSU-1), was originally isolated at Penn State University and is currently employed commercially to carry out the malolactic fermentation wines. Perhaps the most studied aspect of O. oeni is the ability to convert malate to lactate (the malolactic conversion). This involves uptake of malate, its decarboxylation to L-lactic acid and CO2, and subsequent export of end products. The malolactic conversion generates energy for the cell in the form of a proton motive force. Many researchers have examined the diversity of O. oeni strains within and around wineries; an outcome of this analysis is the general view that Oenococcus is a genetically homogenous genus (adapted from http://genome.jgi-psf.org/finished_microbes/oenoe/oenoe.home.html). (EBI Integr8)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Oenococcus Oenococcus oeni PSU-1 Positive Cocci No 1 1 Facultative anaerobe 17 Mesophilic Multiple Free living Nonsporulating No 203123 NC_008528.1 Bac0002174 Tropheryma whipplei str. Twist "Tropheryma whipplei str. Twist is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a Chemoheterotroph, and can be found in all body sites of its human host, from the gastrointestinal tract to the central nervous system, and is an Obligate Anaerobe. The gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram staining procedure, appearing purple under a microscope. Its rod-shaped morphology allows it to adhere to and invade host cells efficiently. As a mesophile, Tropheryma whipplei str. Twist grows best in temperatures between 20-45°C, which is typical for many human pathogens.As a Chemoheterotroph, the microbe relies on organic compounds for energy and carbon, which it obtains from its host. This classification also implies that it cannot produce its own food through photosynthesis or chemical reactions. The ability of Tropheryma whipplei str. Twist to infect all body sites makes it a highly adaptable and versatile pathogen. Its strict requirement for anaerobic conditions suggests that it is well-suited to the low-oxygen environments found in many parts of the human body. ↵Tropheryma whipplei str. Twist causes Whipple's disease, a rare but potentially fatal condition if left untreated, and recent studies have shed light on its genetic diversity and the importance of early diagnosis for effective treatment, with research ongoing to understand its complex interactions with the human host and to develop more effective therapeutic strategies." Bacillati Actinomycetota Actinomycetes Micrococcales Tropherymataceae Tropheryma Tropheryma whipplei Twist Positive Rod No 1 1 Aerobe 37 Mesophilic HostAssociated Yes 203267 NC_004572.3 Bac0002175 Volucribacter psittacicida str. DSM 15534 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Volucribacter Volucribacter psittacicida microaerophile 203482 SMFT00000000.1 Bac0002176 Alteromonas marina Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas marina 203795 JWLW00000000.1 Bac0002177 Dickeya zeae str. MS2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya zeae 204042 NZ_CP025799.1 Bac0002178 Candidatus Chryseobacterium massiliae str. CCUG 51329 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Candidatus Chryseobacterium massiliense 204089 QNVU00000000.1 Bac0002179 Brucella suis 1330 "Brucella sp. causes brucellosis, a ""zoonotic disease endemic in many areas of the world, characterized by chronic infections in animals leading to abortion and infertility, and a systemic, febrile illness in humans"" (Paulsen et al. 2002). Brucella suis was the first pathogenic organism used by the U.S. military as a weapon backing in the 1950s. Although treatment is available for brucellosis, it is prolonged antibiotic therapy. In addition, early diagnosis is problematic and no acceptable vaccines have been made (Paulsen et al. 2002).The genome of Brucella melitensis strain 16M is comprised of 3,294,931 bp in two circular chromosomes. Chromosome I has 2,117,144 bp and chromosome II has 1,177,787 bp; of both of these chromosomes, 3,198 ORFs were predicted. Genes encoding for DNA replication, protein synthesis, core metabolism, and cell-wall biosynthesis can be found on both chromosomes. It has been speculated that the second, smaller chromosome might have evolved from a megaplasmid such as the one located in Agrobacterium (DelVecchio et. al. 2002) . Some of the clusters, such as arginine and ornithine cyclodeamidase genes and the virB operon, that are on chromosome II are actually homologous to genes located in the same order on the Ti plasmid in Agrobacterium tumefaciens (Paulsen et al. 2002).Brucella is a Gram-negative pathogen that is distringuished from most other pathogens because it does not have ""obvious virulence factors"" like ""capsules, fimbriae, flagella, exotoxins, exproteases, or other exoenzymes, cytolysins, resistance forms, antigenic variation, plamids, or lysogenic phages"" (Moreno and Moriyon 2002). In addition to this, analyses of three Brucella species have shown that their genomes lack the functional sequences of so-called classical virulence factors, pathogenic islands, and a complete set of genes to mount, types I, II, and II secretion systems. It was found, however, that the bacterium recruits actin and activates small GTP-ases when in internalizes into cells (Moreno and Moriyon 2002).In a study investigating B. abortus's internalization and intracellular growth in nonphagocytic Vero cells, it was found that smooth virulent, smooth attenuated, and rough strains of the bacterium replicated within the cells. However, rough strains were more adherent and entered more Vero cells than the other strains. The smooth virulent B. abortus strains replicated intracellularly at a larger percentage than smooth attenuated or rough strains. These differences in adhesiveness and invasiveness are due to hydophobicity of the bacteria as measured by hydrocarbon adherence. Both intracellular smooth and rough Brucella were found within cisternae of the rough endoplasmic reticulum and nuclear envelope. The study concluded in suggesting that the movement to the rough endoplasmic reticulum is ""the limiting step in the infection of nonphagocytic cells by B. abortus"" (Detilleux et al. 1990).Brucella is a pathogenic bacterium that has been called ""exceedingly well adapted"" to the niche of living in compartments within professional and nonprofessional phagocytes (Moreno and Moriyon 2002). It is found all over the world infecting many different types of mammals from marine mammals to horses to humans.Brucellosis occurs all over the world and is caught from exposure to infected animals, meat, or unpasteurized milk products. Brucella bacteria can survive inside macrophages and are facultative intracellular pathogens - they enter their host through mucosal sufaces. The bacterium is able to do this because it is Gram-negative and ""can present itself upon culture with a smooth or rough colony mophology"" because it is ""possible for smooth colonies to spontaneoulsy become rough and some rough colonies to spontaneously become rough"" (Schurig). Inside macrophages, Brucella survives by inhibiting the phagosome-lysosome fusion. Within placental trophoblasts and other non-professional phagocytes, Brucella have been shown to localize and proliferate in autophagosome-like compartments resembling the rough endoplasmic reticulum (Moreno and Moriyon 2002). Similarly, Brucella abortus localizes and replicates in the rough endoplasmic reticulum of trophoblastic epithelial cells in pregnat ruminants (Detilleux et al. 1990). However, most of the mechanisms that allow the bacteria to cause tissue tropism as well as the way in which Brucella enters and lives in such different host cells such as epithelial cells are not known.Brucella is generally known for causing infertility, abortions, and other reproductive complications in animals with the disease brucellosis, however, this bacterium is also the cause of a rarer, more severe systemic infection called neurobrucellosis. Neurobrucellosis results in the formation of Brucella granulomas in the central nervous system in sellar and parasellar sites and in the spinal cord. Reports of this disease in humans identified a marine mammal Brucella strain as the culprit which confirmed that this bacterium can in fact cross over from their primary hosts in a community setting. The patient whose brain is pictured to the right had a 1-year history of headaches, nausea, vomiting, and progressive deterioration in visual function before examination - neurologic examination found a right homonoymous hemianopsia, optic nerve atrophy, and a major visual impairment. He started anti-brucella therapy, which continued for 1 year and the enhancement and edema receded (Sohn et al. 2003). (From http://microbewiki.kenyon.edu/index.php/Brucella) (MicrobeWiki: Brucella)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella suis 1330 Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Free living Swine- Homo sapiens Pairs - Chains - Singles Nonsporulating Yes 204722 NC_017251.1 Bac0002180 Agromyces albus str. DSM 15934 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces albus 205332 SDPN00000000.1 Bac0002181 Bifidobacterium longum DJO10A "Bifidobacterium longum DJO10A is a species of bacterium that thrives in a temperature range of 37°C to 45°C, placing it in the mesophilic category. This microbe is a Heterotroph, meaning it requires a pre-existing energy source to survive, as opposed to producing its own energy through photosynthesis. B. longum DJO10A uses fermentation to produce energy, breaking down complex organic molecules and releasing energy through the processes of glycolysis and the citric acid cycle. Gram-stained, B. longum DJO10A displays a characteristic Gram positive staining pattern, indicating the presence of a thick peptidoglycan layer in its cell wall. The bacterium has a rod-shaped morphology, with a length of approximately 0.5-1.5 μm and a width of 0.2-0.5 μm. As a member of the genus Bifidobacterium, B. longum DJO10A can be found in all body sites, including the gastrointestinal tract, oral cavity, and genitourinary tract of humans and animals. It is an Obligate Anaerobe, meaning it cannot survive in the presence of oxygen and will die off quickly if exposed to high levels of O2. In terms of oxygen preference, B. longum DJO10A is a strict anaerobe that requires an oxygen-free environment to thrive. This is likely due to its ability to survive in the lower oxygen environments of the gastrointestinal tract and other body sites. B. longum DJO10A has been shown to have potential health benefits, particularly in the context of gut health and immune modulation. It has been used as a probiotic in certain human studies, demonstrating its ability to colonize the human gut and provide beneficial effects on the host. Furthermore, research has implicated B. longum DJO10A in the regulation of the host's metabolic response to dietary changes, highlighting its importance in maintaining a balanced gut microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum DJO10A Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs - Singles Nonsporulating No 205913 NC_010816.1 Bac0002182 Pseudomonas syringae pv. syringae B728a "This plant pathogen causes disease in a wide range of plants and crops, including bacterial speck on tomatoes. Black specks form on the leaves and fruit, stunting growth. This gram negative pathogen also causes halo blight of beans. It is primarily seed-borne, and can also be spread from plant to plant by rain. Pseudomonas syringae is a model organism in plant pathology.This is a very versatile organism with several important phenotypes that have made it a focus of study and commercial application and a relevant organism for the DOE in the USA to support resarch, as this plant pathogen causes disease in a variety of plant species, severely impacting both food and biomass production.Also strains of P. syringae have been exploited for a variety of industrial purposes of significance to DOE. For example, many strains of this species are active as ice nuclei catalyzing ice formation at temperatures approaching 0 C. For this reason they have been exploited as artificial ice nucleating agents in processes such as those involved in artificial snow production. A major use of the freeze-dried cells of P. syringae used in such an application has been in the creation of artificial ice islands to facilitate offshore oil drilling in cold oceans such as in the arctic. In a similar application there has been interest in using such ice nucleation active bacteria for the production of artificial mountains of ice in the winter for use in summer cooling of large industrial and office buildings. There is also considerable activity in the study of the use of such bacterial ice nuclei in improving the process of freezing of various foods, including frozen emulsified foods such as ice cream to improve both the energy efficiency of the process and quality of the product.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae B728a Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Nonsporulating No 205918 NC_007005.1 Bac0002183 Ehrlichia chaffeensis str. Arkansas "Ehrlichia chaffeensis (strain Arkansas) is an intracellular vector-borne pathogen that causes human ehrlichiosis. It depends on hematophagous ticks as a vector and wild mammals as a reservoir host. It has been most commonly identified in the Lone Star tick (Amblyomma americanum), with white-tailed deer considered to be the major reservoir. E. chaffeensis is the causative agent of human monocytic ehrlichiosis (HME), a disease that was discovered in 1986. It is a systemic disease that is indistinguishable from human granulocytic ehrlichiosis (HGA) caused by Anaplasma phagocytophilum. It replicates in monocytes/macrophages. The genome of E. chaffeensis is made up of a singular chromosome. Despite the limited ability of Rickettsiales to synthesize amino acids, E.chaffeensis seems to be able to synthesize arginine and lysine. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia chaffeensis Arkansas Negative Rod No 1 2 Mesophilic HostAssociated Symbiotic Homo sapiens Singles Yes 205920 NC_007799.1 Bac0002184 Sulfurovum lithotrophicum str. ATCC BAA-797 "Sulfurovum lithotrophicum str. ATCC BAA-797 is a Gram-negative, ovoid, non-spore-forming bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is notable for its lithotrophic capabilities, which allow it to utilize inorganic compounds as electron donors, thereby playing a significant role in biogeochemical cycling, particularly in sulfur cycling. ↵↵The anaerobic nature of S. lithotrophicum suggests its adaptation to environments devoid of oxygen, where it may contribute to the reduction of sulfur compounds, a process critical in certain ecological niches such as deep-sea hydrothermal vents and marine sediments. The optimal temperature of 29.0°C indicates a mesophilic lifestyle, which aligns with the thermal conditions found in various natural habitats where sulfur compounds are prevalent. ↵↵Research on S. lithotrophicum str. ATCC BAA-797 could provide insights into microbial metabolism and the ecological roles of lithotrophs in sulfur-rich environments. Understanding the metabolic pathways and ecological interactions of this bacterium may reveal its potential contributions to nutrient cycling and energy flow in anaerobic ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum lithotrophicum Gram-negative ovoid non-motile anaerobic 29 mesophilic non-spore-forming 206403 NZ_CP011308.1 Bac0002185 Kerstersia gyiorum str. CG1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Kerstersia Kerstersia gyiorum 206506 NZ_CM004382.1 Bac0002186 Streptomyces sp. FR-008 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. FR-008 206662 NZ_CP009804.1 Bac0002187 Roseomonas mucosa str. AU37 "Roseomonas mucosa strain AU37 is a Gram-negative, nonsporulating bacterium that exhibits chemoheterotrophic metabolism and is classified as a facultative anaerobe. This organism is capable of utilizing organic compounds as energy sources, allowing it to thrive in a variety of environments where oxygen availability may fluctuate. The facultative anaerobic nature of R. mucosa AU37 suggests a versatile metabolic capability, enabling it to adapt to both aerobic and anaerobic conditions.↵↵The Gram-negative cell wall structure of R. mucosa AU37 is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may play a role in its resilience to environmental stressors and its interactions with other microbial communities. As a nonsporulating bacterium, R. mucosa AU37 does not form spores, which typically serve as a survival mechanism under adverse conditions. This trait may indicate a reliance on stable environmental niches for survival and growth.↵↵In terms of ecological significance, R. mucosa AU37 may contribute to nutrient cycling in its habitat, particularly in environments rich in organic matter. Its ability to function in both oxygen-rich and oxygen-poor settings may facilitate its involvement in various biochemical processes, such as the degradation of complex organic materials. Understanding the metabolic versatility of R. mucosa AU37 could provide insights into its role in microbial ecosystems and its potential applications in bioremediation or bioprocessing." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Roseomonas mucosa Negative No 1 Facultative anaerobe Chemoheterotroph Nonsporulating 207340 LLWF00000000.2 Bac0002188 Roseomonas mucosa "Roseomonas mucosa is a Gram-negative, coccoid-shaped bacterium categorized as a mesophile, thriving optimally at moderate temperatures, and is classified as a chemoheterotroph, utilizing organic compounds for energy and growth. This microbe is part of the diverse human microbiota, found in various body sites, including the skin, respiratory tract, and gastrointestinal tract. It is considered a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments, which contributes to its adaptability in different niches within the human body. The Gram-negative nature of Roseomonas mucosa is characterized by its thin peptidoglycan layer and outer membrane containing lipopolysaccharides, which can influence its interaction with the immune system. The coccoid shape allows for efficient colonization and establishment in the human microbiome. Being mesophilic, it thrives in the moderate temperature ranges typical of human body sites, making it well-suited for survival in such environments. As a chemoheterotroph, Roseomonas mucosa relies on organic nutrients derived from the host or surrounding environments, highlighting its role in nutrient cycling within the microbiome. Its facultative anaerobic metabolism allows it to adapt to varying oxygen levels, enabling it to persist in different tissues and conditions. Beyond its role in the human microbiome, Roseomonas mucosa has attracted interest in clinical microbiology due to its potential association with opportunistic infections, particularly in immunocompromised individuals. Recent studies have suggested a possible link between this microbe and skin conditions, underscoring the need for further research to understand its pathogenic potential and environmental adaptability." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Roseomonas mucosa Negative No 1 Facultative anaerobe Chemoheterotroph Nonsporulating 207340 UGVN00000000.1 Bac0002189 Microbacteriaceae bacterium MWH-Ta3 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacteriaceae bacterium MWH-Ta3 207608 QBKD00000000.1 Bac0002190 Variovorax sp. WDL1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. WDL1 207745 LMTS00000000.1 Bac0002191 Alkalihalobacillus macyae str. DSM 16346 Bacillati Bacillota Bacilli Caryophanales Guptibacillaceae Guptibacillus Guptibacillus hwajinpoensis 208199 LELK00000000.1 Bac0002192 Kosakonia cowanii str. FBS 223 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia cowanii aerobic alfalfa 208223 NZ_CP035129.1 Bac0002193 Amycolatopsis japonica str. MG417-CF17 (=DSM 44213) Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis japonica 29 mesophilic 208439 NZ_CP008953.1 Bac0002194 Enterocloster bolteae "Clostridium botulinum is a gram-positive, anaerobic, spore-forming bacterium that thrives in a temperature range of 37°C to 40°C, falling under the category of mesophile thermotypes. As a heterotroph, it derives its energy from the breakdown of organic matter, specifically through fermentation. This microbe produces energy by converting glucose into pyruvate, which is then converted into lactic acid, acetic acid, and carbon dioxide. Upon staining with Gram's method, C. botulinum exhibits a characteristic Gram-positive staining pattern, meaning that the cell wall retains the crystal violet stain and appears blue under the microscope. The bacterium typically appears as a rod-shaped (bacillus) cell, often with a tendency to form chains or clusters. C. botulinum can be found in soil, water, and improperly sterilized food, and is capable of infecting various body sites, including the gastrointestinal tract, respiratory system, and nervous system. As an obligate anaerobe, it requires a low-oxygen environment to survive and grow, making it most commonly associated with wounds, abscesses, and other trauma sites. Despite its adverse effects on human health, C. botulinum has been employed in various pharmaceutical applications, such as the production of botulinum toxin, a neurotoxin used to treat conditions like cervical dystonia and blepharospasm. Additionally, the bacterium's ability to form endospores has led to its use in the development of novel biodegradable plastics and biomedical implant materials. In the context of food poisoning, the bacterium's ability to produce botulinum toxin poses a significant risk to public health. When ingested, the toxin can cause a range of symptoms, including muscle weakness, difficulty swallowing, and respiratory failure. Therefore, proper food handling and storage practices are crucial to prevent the growth and subsequent toxin production of C. botulinum." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster bolteae Positive Rod No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 208479 QSHZ00000000.1 Bac0002195 Williamsoniiplasma lucivorax str. PIPN-2 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Williamsoniiplasma Williamsoniiplasma lucivorax 209274 PHNE00000000.1 Bac0002196 Dialister histaminiformans Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister histaminiformans No 1 Chemoheterotroph Host Gut Nonsporulating 209880 FMXA00000000.1 Bac0002197 Streptococcus mutans UA159 "Streptococcus mutans UA159 is a Gram-positive, coccoid-shaped bacterium that prefers mesophilic temperatures, is a chemoheterotroph, and functions as a facultative anaerobe. This microbe is primarily found in the human oral cavity, where it colonizes the tooth surfaces, oral mucosa, and sometimes the throat, ultimately playing a critical role in dental health and disease. As a Gram-positive organism, Streptococcus mutans retains the crystal violet stain used in the Gram staining procedure, appearing purple under the microscope. This characteristic is indicative of its thick peptidoglycan layer in the cell wall, which provides structural strength. The coccoid shape allows for close packing in biofilms, a characteristic crucial for colonization in the highly competitive environment of the human mouth. Being mesophilic, it thrives optimally between 30°C and 37°C, which aligns well with the human body temperature, facilitating its growth. As a chemoheterotroph, it derives energy and carbon from organic compounds found in the diet, particularly sugars. This metabolic trait is significant since S. mutans metabolizes sucrose and other fermentable carbohydrates to produce acids, primarily lactic acid, leading to a drop in pH and enamel demineralization, ultimately resulting in dental caries. As a facultative anaerobe, S. mutans can survive in both aerobic and anaerobic conditions, which is advantageous in the oral environment where oxygen levels can vary. This adaptability allows it to thrive in diverse niches within the oral cavity. Notably, Streptococcus mutans has been implicated in the initiation and progression of dental caries, making it a target for preventive strategies in oral health care. Its ability to form biofilms and produce extracellular polysaccharides helps it adhere strongly to tooth surfaces, complicating management and treatment of dental plaque." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans UA159 Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 210007 NC_004350.2 Bac0002198 Vibrio fortis str. Dalian14 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fortis aerobic 212667 JFFR00000000.1 Bac0002199 Clostridium tetani E88 "Clostridia are spore-forming, Gram-positive, anaerobes (although some species are microaerophilic). They are known to produce a variety of toxins, some of which are fatal.The genomes of both Clostridium tetani, the etiological agent of tetanus, and Clostridium perfringens, the etiological agent of gas gangrene have been sequenced. The genome of C. tetani is 2,799,250 bp long with 2,372 open reading frames. C. tetani also contains a plasmid that measures 74,082 bp long with 61 open reading frames and encodes the tetanus toxin.The genome of Clostridium perfringens is 3,031,430 bp long with 2,660 open reading frames and a low G+C content of 28.6%. C. perfringens is an excellent model for genetic studies of the clostridium genus due to its oxygen tolerance and fast growth rate. The genome contains, as would be expected, the typical anaerobic fermentation enzymes leading to gas production (one of the characteristics of gas gangrene, the disease it causes), but no enzymes for the tricarboxylic acid cycle of respiratory chain.Clostridia are commonly found in the environment. They inhabit soil, sewage, and marine sediments, as well as the intestines of both animals and humans. Several species of clostridia are used industrially for the production of alcohols and commercial solvents. A few species, such as C. butyricum and C. pasteurianum fix nitrogen. The spores of clostridia are produced during times of stress, and can persist in toxic environments where the anaerobic bacteria cannot.There are three species of clostridia that cause widely recognized and often-deadly diseases. Clostridium tetani is the etiological agent of tetanus, Clostridium botulinum is the etiological agent of botulism, and Clostridium perfringens is one of the etiological agent of gas gangrene. Tetanus is contracted through contact between spores of C. tetani and an open wound, such as stepping on a rusty nail. If an anaerobic environment is present the spores will germinate. Tetanus is a neurological disease. C. tetani releases an exotoxin called tetanus toxin, which blocks the release of neurotransmitters from the presynaptic membrane of inhibitory interneurons of spinal cord and brainstem of mammals that regulate muscle contraction. This leads to continuous muscle contraction primarily in the neck and jaw muscles (lockjaw). If the infection is left untreated, it will eventually lead to respiratory failure and death. If not treated early, mortality rates for tetanus are relatively high. After World War II with the introduction of the tetanus vaccine, C. tetani infection has become relatively rare in industrialized countries, and almost all cases are due to insufficient immunization.Clostridium botulinum causes botulism, which is contracted through contact (usually ingestion) of botulinum toxin (wound botulism is rare, but can occur). There are about 10-30 outbreaks of botulism reported annually in the United States, almost all of which are associated with improperly canned or processed food (usually home-canned). Sausages, meat products, canned vegetables, and seafood are the most frequent vehicles of C. botulinum. Because clostridium spores can be airborne, they often find their way onto food that is going to be canned, which provides a pleasant anaerobic environment for the spores to germinate and release their toxin. Botulinum toxin is a protein that C. botulinum secretes, which causes muscle paralysis by blocking the presynaptic release of the neurotransmitter acetylcholine. The onset of symptoms for foodborne botulism is usually 18-36 hours after the ingestion of infected food. The toxin causes paralysis that progresses symmetrically downward, usually starting with the eyes and face, then down to the throat, chest, and extremities. Once the chest muscles and diaphragm become involved, respiration becomes difficult and death by asphyxia often results.Clostridium perfringens is one of several species of clostridia known to cause gas gangrene and is the causative agent in 95% of gas gangrene cases. The site of infection is usually a wound that comes into contact with C. perfringens spores that germinate in an anaerobic environment. People with poor circulation are more likely to get this disease, due to their inability to keep all of their tissues adequately oxidized. The C. perfringens toxin, which is a phospholipase, attacks cell membranes, causing extensive tissue damage and necrosis, which further reduces the blood supply to the affected area, promoting the spread of the disease. Gas gangrene gets its name from the frequent formation of gas bubbles in the tissue. These gas bubbles are caused by rapid metabolism by C. perfringens, using the muscle tissue as substrate. If untreated gas gangrene will eventually result in a very painful death, as the bacteria slowly eats away at your flesh. Usual treatment is amputation of the infected areas. (From http://microbewiki.kenyon.edu/index.php/Clostridium) (MicrobeWiki: Clostridium)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tetani E88 (E88 Massachusetts) Positive Rod No 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Pairs - Singles Sporulating Yes 212717 NC_004565.1 Bac0002200 Mycobacterium sp. JS623 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. JS623 212767 NC_019957.1 Bac0002201 Geobacillus zalihae Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus zalihae 213419 NAGF00000000.1 Bac0002202 Microcystis viridis NIES-102 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis viridis 213615 NZ_AP019314.1 Bac0002203 Microcystis aeruginosa PCC 7941 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 213618 CAIK00000000.1 Bac0002204 Ruminococcus champanellensis 18P13 = JCM 17042 "Ruminococcus champanellensis 18P13, also known as JCM 17042, is a type of bacterium that thrives in a warm environment, with a temperature preference category of mesophilic, characterized by temperatures between 20-40°C. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, rather than producing its own energy through photosynthesis or chemosynthesis. Energy production is achieved through aerobic respiration, utilizing oxygen as a final electron acceptor. The bacterium is comprised of a gram-positive cell wall, featuring a characteristic shape of curved rods or ""cigar-shaped"" cells. Originally isolated from the gut of a ruminant host, such as a cow or sheep, Ruminococcus champanellensis 18P13 is found in the gastrointestinal tract of these animals, as well as potentially in other body sites across various species. Oxygen preference is aerobic, meaning it requires the presence of oxygen to grow and thrive. In fact, it is an obligate aerobic, which suggests that it cannot survive in the absence of oxygen. Furthermore, Ruminococcus champanellensis 18P13 is a key member of the gut microbiota, playing a crucial role in the degradation of complex plant polymers and the extraction of nutrients from the diet of its hosts. Its unique set of enzymes and metabolic pathways allows it to contribute to the breakdown of cellulose, hemicellulose, and other dietary fiber components, ultimately influencing the host's nutritional status and overall health. Despite its limited cultivation on laboratory media, Ruminococcus champanellensis 18P13 has been extensively investigated due to its importance in the ruminant gut ecosystem. Its enzymes and metabolic pathways have been studied in detail, providing valuable insights into the evolution of gut microbiota and the degradation of plant material." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus champanellensis Positive Cocci non-motile Anaerobe 37 mesophilic non-spore-forming 213810 NC_021039.1 Bac0002205 Latilactobacillus sakei subsp. sakei str. ATCC 15521 "Latilactobacillus sakei subsp. sakei str. ATCC 15521 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe, which indicates its ability to thrive in both aerobic and anaerobic environments. This strain is part of a broader group of lactic acid bacteria known for their role in fermentation processes. ↵↵L. sakei subsp. sakei is frequently found in a variety of habitats, which may include food products and the gastrointestinal tracts of animals, suggesting its versatility and adaptability to different ecological niches. The facultative anaerobic nature of this strain allows it to utilize various metabolic pathways depending on the availability of oxygen, which may contribute to its persistence in diverse environments.↵↵The ecological significance of L. sakei subsp. sakei str. ATCC 15521 lies in its potential role in food fermentation, particularly in the production of fermented meat and plant products. Its ability to ferment carbohydrates into lactic acid not only influences the flavor and texture of these products but also plays a crucial role in food preservation by inhibiting the growth of spoilage organisms and pathogens. This characteristic underscores the importance of L. sakei subsp. sakei in both food microbiology and the broader context of microbial ecology, where it contributes to the microbial dynamics of fermented foods and potentially influences human dietary health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 214326 PUFE00000000.1 Bac0002206 Staphylococcus nepalensis str. JS1 "Staphylococcus nepalensis str. JS1 is a Gram-positive, cocci-shaped bacterium that typically exists as single cells. This strain is characterized as a nonsporulating organism, which indicates its lack of spore formation as a survival strategy. As a facultative anaerobe, S. nepalensis str. JS1 can thrive in both aerobic and anaerobic environments, showcasing its metabolic flexibility. It is classified as a chemoheterotroph, meaning it derives its energy from organic compounds, which allows it to inhabit a variety of ecological niches.↵↵The habitat of S. nepalensis str. JS1 is diverse, suggesting that it can adapt to different environmental conditions, potentially including both human-associated environments and natural ecosystems. This adaptability may contribute to its ability to persist in various habitats, although specific ecological roles or interactions remain to be elucidated. The unique combination of its Gram-positive nature, cell arrangement, and metabolic capabilities positions S. nepalensis str. JS1 as an organism of interest for further study in microbial ecology and physiology. Understanding its ecological adaptations could provide insights into the broader dynamics of microbial communities in similar environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus nepalensis Positive Cocci No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Singles Nonsporulating 214473 NZ_CP017461.1 Bac0002207 Staphylococcus nepalensis "Staphylococcus nepalensis is a Gram-positive, cocci-shaped bacterium characterized by its nonsporulating structure and its arrangement in singles. This microbe is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. As a mesophilic organism, it prefers moderate temperatures, although its optimal temperature remains unspecified.S. nepalensis exhibits a fermentative metabolism and functions as a chemoheterotroph, utilizing organic compounds as its primary energy source. This versatility in energy acquisition enables it to inhabit diverse ecological niches, potentially including human flora and various environmental sources. The ability to adapt to different oxygen levels may contribute to its survival across varying habitats, making it a resilient organism. Recent studies have highlighted S. nepalensis's unique role within microbial communities, particularly its potential interactions with other bacteria and its impact on human health. By examining its metabolic pathways and interactions with host organisms, researchers are beginning to understand how S. nepalensis may influence local microbial ecosystems and contribute to disease or health states. Such insights could lead to more effective strategies for managing staphylococcal infections and understanding the broader implications of microbial diversity in various environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus nepalensis Positive Cocci No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Singles Nonsporulating 214473 UHDS00000000.1 Bac0002208 Leptospira interrogans serovar Manilae "Leptospira interrogans serovar Manilae is a Gram-negative bacterium characterized by its spirilla shape and aerobic metabolism, thriving optimally at a temperature of 28.0°C. This microbe, a member of the genus Leptospira, is primarily host-associated, indicating a significant relationship with its biological hosts, which can include a variety of mammals. The unique helical structure of L. interrogans allows for motility in liquid environments, contributing to its ecological adaptability.↵↵As an aerobic organism, L. interrogans serovar Manilae requires oxygen for growth and sustenance, which aligns with its habitat preferences where it can exploit oxygen-rich environments within host organisms. The optimal growth temperature of 28.0°C suggests that this serovar may be well-adapted to specific environmental niches that mimic the thermal conditions found within its mammalian hosts or in their habitats.↵↵Understanding the traits of L. interrogans serovar Manilae provides insight into its ecological role and potential interactions within host environments. Given its association with mammals, this bacterium may play a role in the microbial dynamics of host-associated microbiomes, potentially influencing host health or disease states. Further investigations into its ecological interactions may reveal deeper insights into the evolution and adaptation of this pathogen within specific ecological contexts." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 214675 OEJX00000000.1 Bac0002209 Alistipes finegoldii "Alistipes finegoldii is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites, including the gut, skin, and mucous membranes, across different species. As an Obligate Anaerobe, Alistipes finegoldii requires the absence of oxygen to survive and grow. The Gram-negative characteristic indicates that the microbe's cell wall contains a thin peptidoglycan layer, making it more susceptible to certain antibiotics. Its rod-shaped morphology allows it to inhabit and interact with its environment in a specific way, potentially contributing to its ability to colonize and persist in different body sites. As a Chemoheterotroph, Alistipes finegoldii relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth and survival. This metabolic characteristic is crucial for its role in the gut microbiome, where it contributes to the degradation of undigested carbohydrates and production of short-chain fatty acids. The mesophilic temperature preference of Alistipes finegoldii allows it to thrive in temperatures ranging from 20°C to 45°C, which is typical of the human body's core temperature. Its ability to inhabit various body sites, including the gut, skin, and mucous membranes, highlights its adaptability and potential to interact with different host environments. Alistipes finegoldii has been implicated in the production of certain metabolites that may influence host immune responses and overall health. Research has shown that this microbe can produce anti-inflammatory compounds, which may contribute to its potential therapeutic applications in treating certain diseases. Furthermore, Alistipes finegoldii has been detected in higher abundance in individuals with certain metabolic disorders, suggesting a potential link between this microbe and host metabolism." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes finegoldii Negative Anaerobe 214856 CYYQ00000000.1 Bac0002210 Peptostreptococcus russellii str. RT-10B "Peptostreptococcus russellii str. RT-10B is a Gram-positive cocci bacterium characterized by its arrangement in chains and its nonsporulating nature. This strain thrives optimally at a temperature of 37.0°C, reflecting its adaptation to the warm environment of the animal intestinal microflora. As a chemoheterotroph, P. russellii str. RT-10B utilizes organic compounds for energy, which is consistent with its habitat within the gastrointestinal tracts of animals. Notably, this microbe is strictly anaerobic, indicating that it grows in the absence of oxygen, which is typical for many inhabitants of the intestinal ecosystem.↵↵The presence of P. russellii str. RT-10B in the gut flora underscores its potential role in the complex interactions within the microbial community of the intestines. By contributing to the fermentation processes and maintaining gut homeostasis, it may play a pivotal role in the overall health of the host. Further research into its interactions with other gut microbes could provide insights into its ecological functions and contributions to intestinal health, as well as its potential implications in various digestive processes." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus russellii Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Animal Intestinal Microflora Chains Nonsporulating 215200 JYGE00000000.1 Bac0002211 Komagataeibacter rhaeticus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter rhaeticus 215221 NZ_LT575494.1 Bac0002212 Williamsoniiplasma somnilux str. PYAN-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Williamsoniiplasma Williamsoniiplasma somnilux 215578 NZ_CP024965.1 Bac0002213 Schlegelella thermodepolymerans str. DSM 15264 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Caldimonas Caldimonas thermodepolymerans aerobic 215580 SLXF00000000.1 Bac0002214 Caldimonas thermodepolymerans Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Caldimonas Caldimonas thermodepolymerans 215580 PSNY00000000.1 Bac0002215 Roseovarius mucosus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius mucosus 215743 NZ_CP020475.1 Bac0002216 Pseudomonas rhizosphaerae str. DSM 16299 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas rhizosphaerae 216142 NZ_CP009533.1 Bac0002217 Croceibacter atlanticus HTCC2559 "Croceibacter atlanticus HTCC2559T was cultivated from seawater collected at a depth of 250 m from the Sargasso Sea and was isolated by high throughput dilution-to-extinction culturing. It is a bright saffron-colored, strictly aerobic, obligate chemoheterotroph. Cells are non-motile straight rods, about 1.9 um long and 0.4 um wide, dividing by binary fission. Temperature range for growth is 10 - 28 degrees C, with optimum growth at 20 - 23 degrees C with no growth observed at 4 and 30 degrees C. The pH range for growth is pH 6.0 - 10.0, with optimum growth at pH 7.5 - 8.0. It is moderately halophilic, showing good growth at NaCl concentrations of 0.5 - 15% (w/v), with optimal growth at 3.0% (w/v) NaCl. As suggested by it color, it produces carotenoid pigments with wavelength absorbance spectral peaks at 318 and 483 nm. There was no difference in the spectral peaks between light-grown and dark-grown cultures. It degrades gelatin, DNA, starch, casein, and elastin, but not cellulose (adapted from PMID 12747413 and 20639333). (EBI Integr8)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Croceibacter Croceibacter atlanticus HTCC2559 Negative Bacilli No 1 2 Aerobic Chemoheterotroph Mesophilic Aquatic Free living No 216432 NC_014230.1 Bac0002218 Burkholderia cenocepacia J2315 "The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility. Burkholderia cenocepacia is a Gram-negative bacterium which is ubiquitous in the environment and may cause a number of diseases in plants. Human infection can be caused by B.cenocepacia, especially in patients with CF and chronic granulomatous disease, and is often fatal. B.cenocepacia (strain AU1054) was recovered from the blood of a patient with CF. It is characterized as a representative of the B.cenocepacia PHDC clonal lineage. This clone appears to be widely distributed, having been found in CF patients in 24 US states and Europe, as well as in agricultural soil. Its genome consists of 3 chromosomes of 3.2 Mb, 2.6 Mb and 1.1 Mb (adapted from http://genome.jgi-psf.org/burca/burca.home.html). (HAMAP: BURCA)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia J2315 Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Homo sapiens Nonsporulating Yes 216591 NC_011002.1 Bac0002219 Pseudomonas [fluorescens] SBW25 "Pseudomonas fluorescens SBW25 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a heterotrophic aerobe, thriving optimally at a temperature of 25.0°C. This strain is known for its versatile metabolic capabilities, enabling it to utilize a variety of organic compounds as energy sources. Pseudomonas fluorescens species, including SBW25, are commonly found in diverse habitats, often in soil and water environments, where they play crucial roles in nutrient cycling and organic matter degradation.↵↵The ability of Pseudomonas fluorescens SBW25 to thrive in multiple habitats highlights its ecological flexibility and resilience. This adaptability may contribute to its importance in bioremediation processes, where it can assist in the breakdown of pollutants, thereby improving environmental health. Moreover, the strain's aerobic nature indicates that it requires oxygen for growth, which can affect its distribution and interactions within various ecosystems. Overall, Pseudomonas fluorescens SBW25 serves as a model organism for studying microbial ecology and the dynamics of microbial communities in natural environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 216595 NC_012660.1 Bac0002220 Rhizobium leguminosarum bv. viciae 3841 "*Rhizobium leguminosarum bv. viciae 3841* is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperature ranges, is classified as a heterotroph, and functions as a facultative anaerobe. This microbe is predominantly associated with leguminous plants, particularly in root nodules, where it establishes a symbiotic relationship with its host. This unique association is crucial for nitrogen fixation, a process that converts atmospheric nitrogen into a form that is accessible to plants, thereby enhancing soil fertility. Being Gram-negative, *R. leguminosarum* possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which plays a vital role in pathogen defense and structural integrity. The rod shape allows for efficient movement and colonization within the soil and root environments, facilitating its beneficial interactions with plant roots. As a mesophilic organism, it optimally grows at temperatures around 20-30°C, which aligns well with the growing conditions of many legumes. As a heterotroph, *R. leguminosarum* relies on organic compounds sourced from its environment for nourishment. This property aids in its symbiotic function as it utilizes the root exudates from legumes to thrive. Its classification as a facultative anaerobe means it can adapt to both aerobic and anaerobic conditions, an important feature for its survival in the variable environments of soil and root nodules. Beyond its agricultural significance in enhancing plant growth and soil health, *R. leguminosarum bv. viciae 3841* also serves as a model organism for studying nitrogen fixation and symbiotic relationships in plant biology. Its genetic pathways and mechanisms can provide insights into sustainable agricultural practices and bioengineering strategies aimed at improving crop yields without relying heavily on chemical fertilizers." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium johnstonii 3841 Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Symbiotic Pisum sativum Singles Nonsporulating No 216596 NC_008380.1 Bac0002221 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 "Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can infect all body sites in various species, including humans, animals, and birds, and is a facultative anaerobe. As a gram-negative bacterium, it has a thin peptidoglycan layer in its cell wall, which is often associated with its pathogenicity. Its rod shape allows for efficient movement and colonization in host environments. The mesophilic temperature preference of this microbe enables it to grow optimally at temperatures between 20-45°C, making it well-suited to survive in a wide range of environments. As a chemoheterotroph, Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 relies on organic compounds for energy and carbon, which it obtains from its host or environment. This microbe can infect a wide range of body sites, including the gastrointestinal tract, bloodstream, and internal organs, across various species. Its ability to thrive in both aerobic and anaerobic conditions, as a facultative anaerobe, allows it to adapt to different environments and host niches. Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 has been extensively studied as a model organism for understanding Salmonella pathogenesis and has been used to develop novel therapeutic strategies, including vaccine development and antimicrobial therapies, and its genome has been fully sequenced, providing valuable insights into its virulence mechanisms and evolution." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 216597 NC_017720.1 Bac0002222 Stenotrophomonas rhizophila str. QL-P4 "Stenotrophomonas rhizophila strain QL-P4 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources. This strain is categorized as an anaerobe, indicating that it thrives in environments devoid of oxygen. ↵↵The habitat of S. rhizophila str. QL-P4 is diverse, suggesting a versatile ecological adaptability that may allow it to colonize various niches. Its nonsporulating nature implies that it relies on different survival strategies in fluctuating environmental conditions rather than forming spores, which may limit its resilience compared to sporulating organisms. ↵↵Given its anaerobic requirements and chemoheterotrophic lifestyle, S. rhizophila str. QL-P4 may play a significant role in nutrient cycling within anaerobic environments, potentially contributing to the degradation of organic matter in soil or sediment habitats. This ability to thrive in low-oxygen conditions may also reflect its potential involvement in symbiotic relationships with plants or other microorganisms, enhancing nutrient availability in those ecosystems. Thus, the ecological implications of S. rhizophila str. QL-P4 merit further investigation to elucidate its role in biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas rhizophila Negative Rod Yes 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 216778 NZ_CP016294.1 Bac0002223 Bifidobacterium longum str. 51A "Bifidobacterium longum strain 51A is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in clusters, pairs, or as single cells. This microbe is classified as an anaerobe, thriving in environments devoid of oxygen, which aligns with its habitat as a host-associated organism. The optimal growth temperature for Bifidobacterium longum str. 51A is around 37.0°C, which corresponds to the physiological temperature of many mammals, suggesting its adaptation to the gastrointestinal tract of warm-blooded hosts.↵↵As a member of the Bifidobacterium genus, this strain is likely to play a significant role in the gut microbiome, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are essential for gut health. The presence of Bifidobacterium species in the gut is often associated with various health benefits, including enhanced digestion and modulation of the immune response. Additionally, the ability of Bifidobacterium longum str. 51A to exist in different arrangements—clusters, pairs, or singles—may influence its interactions within the complex microbial community of the gut.↵↵Overall, Bifidobacterium longum str. 51A exemplifies a specialized adaptation to anaerobic conditions within host-associated environments, highlighting its potential significance in the maintenance of gut homeostasis and overall host health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 NZ_CP026999.1 Bac0002224 Bifidobacterium longum "Bifidobacterium longum is a Gram-positive, rod-shaped bacterium that thrives in a temperature range of 37°C to 45°C, falling under the category of mesophilic microorganisms. This bacterium is a heterotroph, meaning it obtains its energy by breaking down organic compounds, and its metabolism is characterized by aerobic respiration, where it utilizes oxygen to produce energy in the form of ATP. The bacterium is a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments, although it prefers oxygen. In terms of its Gram stain, Bifidobacterium longum is classified as Gram-positive, indicating that it has a thick peptidoglycan layer in its cell wall. Its rod-shaped morphology allows it to move efficiently through its environment and colonize various body sites. As a member of the Bifidobacterium genus, B. longum is commonly found in the gastrointestinal tract of mammals, particularly in the large intestine, where it plays a crucial role in maintaining gut health. In addition to its role in the gut, B. longum can also be found in other body sites, such as the oral cavity, skin, and respiratory tract, although it is less prevalent in these locations. The bacterium's oxygen preference as a facultative anaerobe allows it to adapt to various environments, from aerobic to anaerobic conditions. Notably, Bifidobacterium longum has been implicated in various human health-related benefits, including the prevention and treatment of gastrointestinal disorders, modulation of the immune system, and production of short-chain fatty acids. Furthermore, research has shown that this bacterium can contribute to the breakdown of complex dietary fibers, making it an important player in human nutrition. Its ability to produce antimicrobial compounds also makes it a potential bioprobe for the detection of pathogens." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 PJDR00000000.1 Bac0002225 Bifidobacterium longum str. BG7 "Bifidobacterium longum strain BG7 is a Gram-positive, rod-shaped bacterium that typically exists in clusters, pairs, or as single cells. This nonsporulating microbe thrives optimally at 37.0°C and is classified as an anaerobe, indicating that it requires an oxygen-free environment for growth. Bifidobacterium longum is predominantly found in host-associated habitats, often colonizing the gastrointestinal tract of various mammals, including humans.↵↵As a member of the Bifidobacterium genus, strain BG7 is known for its role in maintaining gut health and modulating the host's immune response. Its presence in the gut microbiota is associated with beneficial effects, such as aiding in the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for colonic health. The ability of Bifidobacterium longum to form clusters and pairs may enhance its stability and resilience within the gut environment, potentially facilitating its interactions with other microbial species and the host's epithelial cells.↵↵Given its anaerobic nature and optimal growth conditions, Bifidobacterium longum strain BG7 exemplifies the adaptations that enable certain beneficial microbes to thrive in specific niches of the host, contributing to the complex interplay between the microbiome and host health. These traits highlight the importance of such bacteria in the maintenance of microbial diversity and overall gut function." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 NZ_CP010454.1 Bac0002226 Mesoplasma corruscae str. ELCA-2 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma corruscae 216874 PHNF00000000.1 Bac0002227 Vibrio vulnificus CMCP6 "Vibrio vulnificus is a lactose-fermenting, halophilic, gram-negative, opportunistic pathogenic bacterium from the same family as those that cause cholera. It normally lives in warm seawater and is part of a group of vibrios that are called ""halophilic"" because they are salt requiring organisms.This organism causes wound infections, gastroenteritis, or a syndrome known as primary septicemia.Found in warm coastal waters, this bacterium is related to the cholera pathogen and can cause a severe and potentially fatal illness. Infections tend to occur through eating raw or improperly cooked shellfish, particularly oysters. The ingestion of V. vulnificus by healthy individuals can result in gastroenteritis. The ""primary septicemia"" form of the disease can follow.Wound infections result either from contaminating an open wound with sea water harboring the organism, or by lacerating part of the body on coral, fish, etc., followed by contamination with the organism.Persons who are immunocompromised, especially those with chronic liver disease, are more at risk from Vibrio vulnificus. There is no evidence for person-to-person transmission.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Homo sapiens Singles Nonsporulating Yes 216895 NC_004459.3 Bac0002228 Lederbergia galactosidilytica str. G25-74 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lederbergia Lederbergia galactosidilytica 217031 LDJR00000000.1 Bac0002229 Paenibacillus pasadenensis str. R16 "Paenibacillus pasadenensis strain R16 is a Gram-positive, rod-shaped bacterium characterized by its spore-forming capability and aerobic metabolism. This microorganism exhibits a robust ability to thrive in oxygen-rich environments, which is indicative of its metabolic requirements and ecological adaptations.↵↵As a member of the Paenibacillus genus, strain R16 is likely to possess traits common to its relatives, such as the ability to degrade complex organic materials, which may contribute to nutrient cycling in its natural habitat. The spore-forming ability of this strain allows it to endure adverse environmental conditions, providing a survival advantage in fluctuating ecosystems.↵↵The aerobic nature of Paenibacillus pasadenensis str. R16 may facilitate interactions with other microbial residents in its environment, potentially influencing community dynamics. Its role in the decomposition of organic matter could be significant in soil health and fertility, emphasizing the importance of such microorganisms in maintaining ecosystem balance. Overall, the physiological traits of strain R16 suggest it may play a vital role in its ecological niche, particularly in the context of organic matter turnover and nutrient cycling in aerobic environments." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus pasadenensis Gram-positive rod aerobic spore-forming 217090 NFEZ00000000.1 Bac0002230 Achromobacter spanius str. UQ283 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter spanius 217203 NZ_CP034689.1 Bac0002231 Achromobacter spanius Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter spanius 217203 NZ_CP023270.1 Bac0002232 Aeriscardovia aeriphila "Aeriscardovia aeriphila is a Gram-positive, rod-shaped bacterium that is non-spore-forming and thrives at an optimal temperature of 37.0°C. This microbe is predominantly found in fecal matter, suggesting a close association with the gastrointestinal tracts of its hosts. ↵↵The Gram-positive nature of Aeriscardovia aeriphila indicates that it possesses a thick peptidoglycan layer in its cell wall, which is characteristic of this bacterial group. The rod shape may contribute to its ecological adaptability within the anaerobic environment of feces, where it may play a role in the breakdown of organic materials. ↵↵While the specific ecological roles of Aeriscardovia aeriphila remain to be fully elucidated, its presence in fecal samples suggests it may be involved in microbial communities that assist in nutrient cycling or contribute to the overall gut microbiota. Understanding its interactions within these ecosystems may provide insights into the dynamics of gut health and the maintenance of microbial diversity in fecal environments. Further research could illuminate its potential contributions to the microbiome and its implications for host health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Aeriscardovia Aeriscardovia aeriphila Gram-positive rod non-motile 37 mesophilic faeces non-spore-forming 218139 MWWU00000000.1 Bac0002233 Bifidobacterium psychraerophilum str. LMG 21775 "Bifidobacterium psychraerophilum str. LMG 21775 is a Gram-positive, non-spore-forming rod-shaped bacterium characterized by its ability to thrive at an optimal temperature of 37.0°C. This organism is part of the genus Bifidobacterium, which is known for its role in the gastrointestinal microbiota of various hosts, contributing to digestive health and homeostasis.↵↵Bifidobacterium species are generally recognized for their fermentation capabilities, particularly in the breakdown of carbohydrates, which may lead to the production of beneficial metabolites such as short-chain fatty acids. Although specific metabolic pathways for B. psychraerophilum str. LMG 21775 have not been detailed in the provided data, the physiological traits of the genus suggest that it likely engages in similar fermentative processes.↵↵The non-spore-forming nature of this strain implies that it may be more sensitive to environmental stressors compared to spore-forming bacteria, which can endure harsher conditions. This trait could influence its survival and ecological niche, indicating a potential preference for stable environments that support its growth and metabolic activities.↵↵An intriguing aspect of Bifidobacterium psychraerophilum str. LMG 21775 is its psychraerophilic designation, suggesting it may possess adaptations that allow it to function in cooler environments, which may provide insights into its ecological role in microbiomes influenced by temperature variations. This adaptability could be significant in understanding the dynamics of microbial communities in colder habitats." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium psychraerophilum Gram-positive rod non-motile 37 mesophilic non-spore-forming 218140 JGZI00000000.1 Bac0002234 Rossellomorea vietnamensis str. UCD-SED5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Rossellomorea Rossellomorea vietnamensis 218284 LIXZ00000000.1 Bac0002235 Polaribacter butkevichii str. KCTC 12100 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter butkevichii aerobic 218490 MSCK00000000.1 Bac0002236 Pectobacterium atrosepticum SCRI1043 "Pectobacterium atrosepticum strain SCRI1043. This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Genome analysis indicates this organism can fix nitrogen as well as catabolize plant-produced opines. The chromosome also encodes an extensive array of plant cell wall-degrading enzymes such as pectinases as well as all 6 of the known secretion systems. This suggests extensive secretion of pathogenicity determinants such as the aforementioned degradative enzymes but also others such as avirulence proteins. Disruption of the type IV secretion system affected virulence as well, suggesting it is does not simply reflect an integrated plasmid in the chromosome. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium atrosepticum SCRI1043 Negative Rod Yes Anaerobe 27 Mesophilic Multiple Free living Yes 218491 NC_004547.2 Bac0002237 Chlamydia abortus S26/3 "Chlamydia abortus S26/3 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C, indicating its adaptation to a warm-blooded host environment. This microbe is part of the Chlamydiaceae family and is primarily associated with host organisms, suggesting a specialized relationship with its hosts. The host-associated habitat of C. abortus S26/3 underscores its potential reliance on specific biological systems for survival and replication, as well as its potential interactions with host immune responses.↵↵Given its Gram-negative classification, C. abortus S26/3 possesses a characteristic double membrane structure, which may influence its interactions with host cells and the immune system. This structural feature is significant in understanding how the bacterium may evade immune detection and establish itself within host tissues.↵↵The optimal growth temperature of 37.0°C aligns with that of many mammalian hosts, emphasizing the bacterium's adaptation to a warm-blooded environment. This trait suggests a potential evolutionary strategy for survival and proliferation within specific host species.↵↵Further ecological insights into C. abortus S26/3 may be gleaned from its host-associated lifestyle, which could reveal its role in microbial communities and its impact on host health. Understanding these interactions is crucial for comprehending the broader implications of this bacterium in veterinary microbiology and its potential effects on animal populations." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia abortus Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 218497 NC_004552.2 Bac0002238 Sulfitobacter dubius "Sulfitobacter dubius is a Gram-negative, rod-shaped bacterium that is non-spore-forming and exhibits an aerobic metabolism, thriving optimally at a temperature of 25.0°C. This microbe is characterized by its ability to utilize sulfur compounds, which may play a role in sulfur cycling in its environment. ↵↵As a member of the marine microbial community, S. dubius is likely involved in biogeochemical processes that contribute to the degradation of organic matter and the transformation of sulfur species. Its aerobic nature suggests that it requires oxygen for growth and energy production, positioning it within environments where oxygen is readily available, such as coastal waters or sediment layers that are well-oxygenated.↵↵The physiological traits of S. dubius suggest that it may have specific ecological roles, particularly in habitats where sulfur compounds are prevalent. The organism's metabolic capabilities could enable it to participate in the oxidation of sulfides or thiosulfates, thereby influencing sulfur dynamics in marine ecosystems. This positions S. dubius as an important player in the maintenance of ecological balance and nutrient cycling within its niche. Further research could illuminate its specific interactions within microbial communities and its contributions to biogeochemical processes in marine environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter dubius Gram-negative rod aerobic 25 mesophilic non-spore-forming 218673 FOPG00000000.1 Bac0002239 Micromonospora sp. ATCC 39149 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. ATCC 39149 219305 ACES00000000.1 Bac0002240 Pseudomonas protegens Pf-5 "Pseudomonas protegens Pf-5 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in aerobic environments. This heterotrophic microbe has an optimal growth temperature of 25.0°C, suggesting its adaptation to a range of moderately warm habitats. P. protegens Pf-5 is known for its metabolic versatility, allowing it to utilize various organic compounds as energy sources, which is indicative of its ecological role in diverse environments.↵↵This strain has been extensively studied for its potential applications in agriculture and biocontrol, particularly due to its capacity to produce secondary metabolites that may inhibit plant pathogens. The ability of P. protegens Pf-5 to inhabit multiple environments underscores its ecological plasticity, enabling it to thrive in soil, plant rhizospheres, and other niches where organic material is available. Its aerobic nature indicates that it plays a significant role in aerobic decomposition processes, contributing to nutrient cycling in these ecosystems.↵↵Overall, Pseudomonas protegens Pf-5 exemplifies the dynamic interactions within microbial communities, particularly in how heterotrophic bacteria can influence plant health and soil fertility through their metabolic activities and interactions with other organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas protegens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 220664 NC_004129.6 Bac0002241 Lactobacillus plantarum WCFS1 "Lactobacillus plantarum WCFS1 is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in all body sites of various species, including the human gut, mouth, and skin. As a facultative anaerobe, Lactobacillus plantarum WCFS1 can survive in both aerobic and anaerobic environments, making it a versatile microorganism. The gram-positive characteristic is due to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram staining procedure. Its rod shape is typical of many bacteria, allowing for efficient movement and absorption of nutrients. As a mesophile, Lactobacillus plantarum WCFS1 grows best in moderate temperatures, between 20-45°C, which is ideal for its role in fermentation and food production. As a chemoheterotroph, Lactobacillus plantarum WCFS1 relies on external sources of organic compounds for energy and carbon, breaking down complex molecules into simpler ones. Its ability to inhabit all body sites of various species is a testament to its adaptability and resilience. The microbe's facultative anaerobic nature allows it to thrive in environments with or without oxygen, making it a key player in various ecosystems, including the human gut microbiome. Lactobacillus plantarum WCFS1 has been found to produce antimicrobial compounds and contribute to the degradation of toxic substances, making it a valuable microbe in biotechnological applications, and its genome has been fully sequenced, revealing a wealth of information on its genetic makeup and potential uses in food production and human health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum WCFS1 Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Homo sapiens Chains No 220668 NC_006376.1 Bac0002242 Thalassospira xiamenensis str. S27-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira xiamenensis 220697 JPWG00000000.1 Bac0002243 Treponema putidum str. OMZ 758 (ATCC 700334) Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema putidum 221027 NZ_CP009229.1 Bac0002244 Oceanobacillus iheyensis HTE831 "Oceanobacillus iheyensis is a Gram-positive, strictly aerobic, rod-shaped, motile by peritrichous flagella, and spore-forming bacterium. It is alkaliphilic and extremely halotolerant. The optimum concentration of NaCl for growth was 3% at both pH 7.5 and 9.5. It has been isolated from deep-sea sediment at a depth of 1050 m on the Iheya Ridge. (HAMAP: OCEIH)" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus iheyensis HTE831 Positive Rod Yes 1 1 Aerobe 30 Mesophilic Multiple No 221109 NC_004193.1 Bac0002245 Algibacter lectus str. CECT 8301 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Algibacter Algibacter lectus 221126 SORL00000000.1 Bac0002246 Algibacter lectus str. JCM 19300 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Algibacter Algibacter lectus 221126 BBNQ00000000.1 Bac0002247 Algibacter lectus str. JCM19274 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Algibacter Algibacter lectus 221126 BBNU00000000.1 Bac0002248 [Curtobacterium] plantarum str. LMG 16222 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea [Curtobacterium] plantarum 221276 RHDS00000000.1 Bac0002249 Synechococcus sp. RS9917 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. RS9917 221360 AANP00000000.1 Bac0002250 Planococcus maitriensis Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus maitriensis 221799 QLZQ00000000.1 Bac0002251 Phaeobacter inhibens str. P88 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter inhibens 221822 NZ_CP010725.1 Bac0002252 Phaeobacter inhibens str. S4Sm Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter inhibens 221822 LOHU00000000.1 Bac0002253 Helicobacter enhydrae Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter enhydrae 222136 NZ_CP016503.1 Bac0002254 Mycobacterium intracellulare subsp. chimaera str. ZUERICH-1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 222805 NZ_CP015275.1 Bac0002255 Mycobacterium intracellulare subsp. chimaera Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 222805 NZ_CP019222.1 Bac0002256 Kocuria marina str. SO9-6 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria marina 223184 JROM00000000.1 Bac0002257 Rhodococcus gordoniae "Rhodococcus gordoniae is a Gram-positive, aerobic bacterium characterized by its cocci shape, which contributes to its distinctive morphological features. This microbe thrives at an optimal temperature of 29.0°C, underscoring its potential adaptability to environments that maintain moderate warmth. The Gram-positive nature of R. gordoniae suggests a thick peptidoglycan layer in its cell wall, which is typical of bacteria within this classification and may influence its interactions with various substrates in its environment.↵↵While the specific ecological roles of R. gordoniae are not detailed in the provided traits, the presence of aerobic respiration capabilities indicates that this organism may play a significant role in the biogeochemical cycling of carbon or other elements in its habitat. Its ability to metabolize a range of organic compounds could suggest its potential utility in bioremediation processes, particularly in environments where organic pollutants are prevalent. Understanding the metabolic pathways and environmental resilience of R. gordoniae could lead to insights into its role in microbial communities, particularly in soil or contaminated environments. Further research into its ecological interactions could illuminate how this bacterium contributes to ecosystem functions and stability." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus gordoniae Gram-positive Cocci aerobic 29 mesophilic 223392 UGVI00000000.1 Bac0002258 Hydrogenimonas thermophila Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Hydrogenimonadaceae Hydrogenimonas Hydrogenimonas thermophila 223786 FOXB00000000.1 Bac0002259 Clostridium diolis str. WST Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium diolis anaerobic 223919 PRKY00000000.1 Bac0002260 Vibrio parahaemolyticus RIMD 2210633 "Vibrio parahaemolyticus RIMD 2210633 is a gram-negative, rod-shaped bacterium that thrives in warm coastal environments, classified as a mesophile due to its optimum growth temperature range of 20-37°C. As a chemotroph, it derives energy from chemical compounds, specifically organic matter, rather than through photosynthesis. This bacterium is typically found in marine and estuarine environments, particularly in brackish waters, and is associated with various body sites in humans, predominantly the gastrointestinal tract, where it can lead to foodborne illness. Being a facultative anaerobe, V. parahaemolyticus can grow in both the presence and absence of oxygen, which grants it versatility in fluctuating environmental conditions. This adaptability allows the bacterium to survive in anaerobic niches within aquatic ecosystems. The presence of this microbe in coastal waters often correlates with warmer temperatures and higher salinity levels, typically increasing in abundance during the summer months.Vibrio parahaemolyticus RIMD 2210633 is particularly well-known for its role in seafood-related gastroenteritis, with infections often linked to the consumption of raw or undercooked shellfish. The bacterium can produce several virulence factors, including hemolysins and other enzymes that contribute to its pathogenicity. Additionally, it possesses a unique evolutionary history, having undergone horizontal gene transfer, which has diversified its genomic repertoire and enhanced its survival strategies in differing environments. This microbial versatility makes Vibrio parahaemolyticus a fascinating subject of study in food safety and environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Homo sapiens Singles Nonsporulating Yes 223926 NC_004603.1 Bac0002261 Methylorubrum populi str. CD11_7 "Methylorubrum populi strain CD11_7 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This methylotrophic organism thrives optimally at a temperature of 20.0°C and requires oxygen for its metabolic processes, classifying it as an aerobe. Methylorubrum populi's ability to utilize methanol and other one-carbon compounds as energy sources highlights its potential role in the carbon cycle, particularly in environments where such substrates are prevalent. ↵↵The habitat of Methylorubrum populi is described as host-associated, suggesting a symbiotic or associative relationship with its host. This association may facilitate the bacterium's growth and survival, as well as contribute to the metabolic processes of the host organism. Given its methylotrophic nature, Methylorubrum populi could play a significant role in the degradation of organic compounds and the recycling of carbon in its ecological niche. ↵↵Understanding the specific interactions between Methylorubrum populi and its host could provide insights into the broader implications of methylotrophic bacteria in environmental microbiology and their potential applications in biotechnology, particularly in bioremediation or bioenergy." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum populi Negative Rod No 1 2 Aerobe 20 Methylotroph Mesophilic HostAssociated Free living Pairs - Singles 223967 LSNC00000000.1 Bac0002262 Bacillus subtilis subsp. subtilis str. 168 "Bacillus subtilis subsp. subtilis str. 168 is a Gram-positive, rod-shaped bacterium that thrives optimally at moderate temperatures, classifying it as a mesophile. This organism is a heterotroph, obtaining its organic carbon from the breakdown of various substrates, and is categorized as a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments.As a member of the Bacillus genus, B. subtilis str. 168 exhibits resilience and adaptability, frequently found in soil and plant surfaces, as well as within the gastrointestinal tracts of various animals. Its rod-like shape allows for efficient movement and colonization in diverse environments. The Gram-positive nature of this bacterium is indicative of its thick peptidoglycan cell wall, which provides structural integrity and resistance against environmental stresses. This strain has been extensively studied and utilized in biotechnology due to its capacity for producing enzymes, antibiotics, and bioactive compounds. One of the standout traits of B. subtilis is its ability to form endospores, enabling it to survive harsh environmental conditions, including extreme temperatures, desiccation, and nutrient depletion. The endospore formation process not only facilitates survival but also plays a crucial role in its life cycle and ecological resilience. Bacillus subtilis subsp. subtilis str. 168 serves as a model organism in molecular biology, contributing significantly to our understanding of cellular processes and genetic regulation. Its genome has been fully sequenced, allowing researchers to manipulate its genetic material for various practical applications, such as biofertilizers and probiotics in food production. This microorganism also holds promise in sustainable agriculture, enhancing soil health and plant growth while minimizing reliance on chemical fertilizers." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis 168 Positive Rod Yes 1 1 Facultative aerobe 25 Mesophilic Terrestrial Free living Sporulating No 224308 NC_000964.3 Bac0002263 Aquifex aeolicus VF5 "Aquifex aeolicus, which was first found in Yellowstone National Park, can grow at 96 degrees Celsius and is one of the most extreme thermophilic bacteria known. Because of this, Aquifex is thought to be one of the earliest bacteria to diverge from eubacteria. Hyperthermophilic bacteria such as Aquifex are important for industrial processes and its genes can be used in a variety of biotechnological applications.Even though Aquifex has the ability to survive at extreme temperatures, there are only a few specific heat-resistance indicators evident in the A. aeolicus genome. The genome, which is 1,551,335 bp in length, is densely packed and contains genes that overlap others. In addition, no introns or protein splicing elements have been found. This, along with a reduced metabolic flexability, is probably due to the limited genome size; the genome of this complex organism is ony one-third of the E. coli genome.Aquifex are nonsporeforming, gram-negative, generally rod-shaped organisms. They are about 2.0-6.0 micrometers in length and have a diameter of 0.4-0.5 micrometers. As autotrophic organisms, Aquifex fix carbon dioxide from the environment to get the carbon that they need. They are chemolithotrophic, which means that they draw energy for biosynthesis from inorganic chemical sources.Aquifex, meaning ""water-maker,"" got its name because the the final product of this reaction is water. Even so, most Aquificales can use thiosulfate or sulfur as an energy source (much like chlorobium and other green sulfur bacteria) and produce sulfuric acid and H2S instead of water. Although most Aquifcales are strictly aerobic, A. pyrophilus was shown to be able to grow anaerobically by reducing nitrogen instead of oxygen (forming an end product of N2 instead of water).As a hyperthermophilic bactertium, Aquifex aeolicus grows in extremely hot tempuratures such as near volcanoes or hot springs. It needs oxygen to carry on its metabolic machinery, but it can function in relatively low levels of oxygen (A. pyrophilus can grow in levels of oxygen as low as 7.5 ppm). A. aeolicus can grow on hydrogen, oxygen, carbon dioxide, and mineral salts (Deckert et al. 1998). Aquifex species generally form large cell aggregates, which can be comprised of up to 100 individual cells.(From http://microbewiki.kenyon.edu/index.php/Aquifex) (MicrobeWiki: Aquifex)" Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Aquifex Aquifex aeolicus VF5 Negative Cocci No 1 2 Aerobe 96 Chemolithoautotroph Hyperthermophilic Specialized Free living No 224324 NC_001880.1 Bac0002264 Archaeoglobus fulgidus DSM 4304 "Hyperthermophilic, sulfur-metabolizing organism. Cells are irregular spheres with a glycoprotein envelope and monopolar flagella. They grow between 60 and 95 degrees Celsius but their optimum is 83 degrees Celsius. They can be either organoheterotrophic using a variety of carbon and energy sources or they can also be lithoautotrophic using hydrogen, thiosulphate and carbon dioxide. (HAMAP: ARCFU)" Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus DSM 4304 NA Cocci Yes 1 1 Anaerobe 83 Hyperthermophilic Aquatic No 224325 NC_000917.1 Bac0002265 Borreliella burgdorferi B31 "Borreliella burgdorferi B31 is a Gram-negative microbe characterized by its spirilla shape and microaerophilic oxygen requirements, making it well-suited for specific ecological niches associated with host organisms. This bacterium is nonsporulating, indicating that it does not form spores as a means of survival under adverse conditions, which may reflect its adaptation to the stable environments provided by its hosts. ↵↵Borreliella burgdorferi B31 is typically found in host-associated habitats, suggesting a close relationship with its biological hosts, which may play a crucial role in its life cycle and transmission dynamics. The microaerophilic nature of this organism implies that it thrives in environments with lower oxygen levels, potentially influencing its distribution and interaction with other microbial communities in host tissues.↵↵The unique ecological insight into Borreliella burgdorferi B31 is its potential reliance on specific host habitats, which may shape its evolutionary adaptations and interactions within the host microbiome. This relationship underscores the importance of understanding host-associated microbes not only for their biological traits but also for their roles in broader ecological contexts." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella burgdorferi Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Nonsporulating 224326 NC_001856.1 Bac0002266 Methanobrevibacter sp. AbM4 str. Abm4 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. AbM4 224719 NC_021355.1 Bac0002267 Salmonella enterica subsp. enterica serovar Paratyphi B var. L tartrate + "Salmonella enterica subsp. enterica serovar Paratyphi B var. L tartrate + is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and tendency to form chains or exist as singles. This organism thrives optimally at 37.0°C, which correlates with the typical body temperature of its host. As a chemoorganotroph, it derives energy from organic compounds, making it well-suited to environments rich in organic matter, particularly within host-associated habitats.↵↵The microaerophilic nature of S. enterica Paratyphi B var. L tartrate + suggests that it requires low levels of oxygen for growth, which may influence its ecological niche and interactions within the host. This adaptation may also reflect its capability to persist in diverse environments, including within the gastrointestinal tracts of various hosts, where oxygen levels can vary significantly. ↵↵Understanding the traits of this bacterium provides valuable insight into its potential roles in host-associated ecosystems, particularly in relation to nutrient cycling and microbial community dynamics. Its unique adaptations highlight the complex interplay between microbial metabolism and host physiology, underscoring the importance of such microorganisms in both health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 224729 SMRF00000000.1 Bac0002268 Brucella melitensis bv. 1 str. 16M "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucellosis is a major infectious disease for both human and animals. Several Brucella species (B.abortus, B.melitensis and B.suis) have been isolated from many different animals. All three Brucella species cause a severe human disease characterized in its acute phase by undulant fever and in its chronic phase by damage of different organs. Brucellosis is a major problem in the Mediterranean region and parts of Asia, Africa and Latin America. When the infection is localized to the brain or the heart, it can result in a fatal meningitidis or fatal endocarditis, respectively. Brucella melitensis is a facultative intracellular bacterial pathogen that causes abortion in goats and sheep and undulant fever in humans. The disease is transmitted to human by consumption of non-pasteurized milk and milk products or by direct contact with infected animals and carcasses. Although Brucellae contain a large set of flagellar genes, they display a species-specific gene inactivation and consequently are nonmotile. Strain M28 is a virulent strain isolated from sheep in the 1950s. It is the parent of vaccine strain M5-90 (biovar1) which was isolated after M28 was serially passaged through chickens, treated with acriflavine, and passaged for 90 generations in chicken embryo fibroblasts. Comparison of the 2 sequences will give information on vaccine protection (adapted from PMID 21478357). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella melitensis 16M Negative Cocci No 1 2 Aerobe 37 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs - Singles Nonsporulating Yes 224914 NC_003317.1 Bac0002269 Buchnera aphidicola str. Bp "Buchnera aphidicola str. Bp is a Gram-negative bacterium characterized by its occurrence as single cells, predominantly associated with specific host organisms, particularly aphids. This endosymbiotic microbe plays a critical role in the physiology of its aphid hosts, providing essential nutrients that are often deficient in their diet of plant sap. ↵↵Buchnera aphidicola's association with aphids highlights a complex mutualistic relationship, wherein the bacterium synthesizes vital amino acids and vitamins that the host cannot obtain from the limited nutritional content of their primary food source. This nutritional symbiosis not only supports the growth and reproduction of aphids but also influences their ecological success and adaptability in various environments.↵↵The unique adaptation of Buchnera aphidicola str. Bp to a host-associated lifestyle underscores the interdependence between symbiotic bacteria and their insect hosts. This relationship exemplifies how microbial symbionts can significantly impact the evolution and ecological dynamics of their hosts, contributing to the broader understanding of microbial interactions within ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Buchnera Buchnera aphidicola Negative Mesophilic HostAssociated Symbiotic Singles 224915 NC_004555.1 Bac0002270 Treponema berlinense "Treponema berlinense is a mesophilic, spirilla-shaped bacterium characterized by its nonsporulating nature and occurrence in singles. This microbe thrives optimally at temperatures around 30°C and exhibits a fermentative metabolism as a chemoheterotroph, utilizing organic compounds as energy sources. The habitat of Treponema berlinense is diverse, indicating a remarkable adaptability to various environmental conditions. While specific details regarding its Gram stain reaction and oxygen requirements remain unknown, its unique morphological and metabolic characteristics suggest a significant ecological role in its native environments. Treponema species are commonly associated with anaerobic environments, hinting at potential interactions with other microorganisms, such as those involved in organic matter decomposition. Ecologically, Treponema berlinense is likely to contribute to nutrient cycling within its habitat, particularly in sediments where fermentative processes are essential. Its survival in diverse conditions suggests it can interact with a variety of substrates, influencing the microbial community dynamics. The presence of such a bacterium may enhance the breakdown of complex organic materials, thereby playing a pivotal role in maintaining ecosystem health and stability. Understanding the specific interactions and functions of Treponema berlinense could provide insights into microbial ecology and the significance of anaerobic bacteria in broader environmental processes." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema berlinense Spirilla Yes 1 anaerobic 30 Chemoheterotroph Mesophilic Multiple Singles Nonsporulating 225004 FUXC00000000.1 Bac0002271 Enhydrobacter aerosaccus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Enhydrobacter Enhydrobacter aerosaccus 225324 FUWJ00000000.1 Bac0002272 Clostridium chromiireducens str. DSM 23318 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium chromiireducens 225345 MZGT00000000.1 Bac0002273 Brevibacterium sanguinis str. 3b_TX Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium celere aerobic 225845 QNSB00000000.1 Bac0002274 Shewanella piezotolerans WP3 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.Shewanella piezotolerans WP3, a piezotolerant and psychrotolerant iron reducing bacterium was isolated from a western Pacific Ocean sediment sample located at a water column depth of 1,914 m. It grows optimally at 15-20 degrees C and with a broad pressure optimum extending from atmospheric pressure to about 20 MPa. It possesses numerous genes or gene clusters which help it to cope with extreme living conditions such as genes for two sets of flagellum systems, structural RNA modification, eicosapentaenoic acid (EPA) biosynthesis and osmolyte transport and synthesis. And WP3 contains 55 open reading frames encoding putative c-type cytochromes which are substantial to its wide environmental adaptation ability. The mtr-omc gene cluster involved in the insoluble metal reduction in the Shewanella genus was identified and compared. The two sets of flagellum systems were found to be differentially regulated under low temperature and high pressure; the lateral flagellum system was found essential for its motility and living at low temperature (adapted from PubMed 18398463). (HAMAP: SHEPW)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella piezotolerans WP3 Negative Rod Yes 1 2 Facultative 15 Heterotroph Mesophilic Specialized Free living Pairs - Singles Nonsporulating No 225849 NC_011566.1 Bac0002275 Marinobacter adhaerens HP15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter adhaerens 225937 NC_017508.1 Bac0002276 Bacteroides thetaiotaomicron VPI-5482 "Bacteroides thetaiotaomicron VPI-5482 is an obligate anaerobe, a chemoheterotroph that generates energy through fermentation, is Gram-negative, rod-shaped, and commonly inhabits the human colon as well as other body sites such as the oral cavity and gastrointestinal tract. This microbe is a member of the Bacteroidetes phylum, which is characterized by its significant role in the human gut microbiome. As an obligate anaerobe, Bacteroides thetaiotaomicron thrives in environments devoid of oxygen, making it well-suited for the anaerobic conditions of the intestine. Its classification as a chemoheterotroph means that it derives energy from organic compounds, specifically polysaccharides, which it breaks down through fermentation. This metabolic activity not only provides energy for the organism but also contributes to the fermentation of dietary fibers, producing short-chain fatty acids that are beneficial to human health. The Gram-negative nature of Bacteroides thetaiotaomicron indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which can provide a protective barrier against certain antibiotics and host immune responses. Its rod-shaped morphology allows it to efficiently colonize the intestinal mucosa, where it plays a crucial role in maintaining gut homeostasis and supporting the immune system. Bacteroides thetaiotaomicron is also known for its ability to degrade complex carbohydrates, which promotes a healthy gut environment and aids in nutrient absorption. Furthermore, it has been studied for its potential therapeutic applications, including its role in modulating inflammatory responses and its interactions with various pharmaceuticals, underscoring its significance in both human health and disease management." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron VPI-5482 Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Homo sapiens No 226186 NC_004703.1 Bac0002277 Algoriphagus halophilus "Algoriphagus halophilus is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0°C. This species is characterized by its non-spore-forming nature, which indicates a reliance on vegetative growth for survival and reproduction. The morphological and physiological traits of A. halophilus suggest adaptations to specific environmental niches, particularly those with saline conditions, as implied by its genus name, Algoriphagus. ↵↵The ability to grow optimally at 37.0°C aligns with the thermal preferences of many microorganisms found in warm, nutrient-rich environments. While the specific ecological role of A. halophilus is not detailed in the provided traits, its aerobic nature suggests a potential involvement in the degradation of organic matter in oxygenated habitats. This could indicate a role in biogeochemical cycling, particularly in saline ecosystems where organic materials are abundant. ↵↵Furthermore, the non-spore-forming trait of A. halophilus may reflect a strategy for maintaining metabolic activity in stable environments, as opposed to forming spores for survival in fluctuating conditions. Understanding the growth characteristics and ecological roles of A. halophilus can provide insights into the dynamics of microbial communities in saline environments, contributing to a broader understanding of microbial ecology and potential applications in biotechnology." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus halophilus Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 226505 FSRC00000000.1 Bac0002278 Algoriphagus ornithinivorans "Algoriphagus ornithinivorans is a Gram-negative, rod-shaped bacterium that thrives optimally at 37°C and exhibits aerobic metabolic characteristics. As a non-spore-forming organism, it relies on aerobic respiration for energy, which is indicative of its adaptation to environments with sufficient oxygen availability.↵↵The rod shape of A. ornithinivorans is a common morphological trait observed in many aerobic bacteria, potentially facilitating its motility and nutrient uptake in various aquatic environments. The optimal growth temperature of 37°C suggests that this microbe may be adapted to warm habitats, which could include associations with warm-blooded hosts or environments that maintain elevated temperatures due to biological or geochemical processes.↵↵The specific metabolic pathways employed by A. ornithinivorans in the degradation of organic matter, particularly its ability to utilize ornithine, may position it as a key player in nutrient cycling within its ecological niche. This trait implies a role in the breakdown of nitrogenous compounds, contributing to the overall nitrogen cycle in its environment. Understanding the physiological capabilities of A. ornithinivorans enhances our knowledge of microbial diversity and the functional roles of bacteria in ecosystem dynamics, especially in relation to nitrogen metabolism in aerobic conditions." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus ornithinivorans Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 226506 FOVW00000000.1 Bac0002279 Bacillus cereus ATCC 14579 "Bacillus cereus ATCC 14579 is a gram-positive, rod-shaped bacterium that thrives in moderate temperature ranges (mesophilic) and is classified as a chemoheterotroph. This versatile microbe is commonly found in various environments, including soil, vegetation, and even in the gastrointestinal tracts of animals and humans. It is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, making it adaptable to differing environmental conditions. As a gram-positive bacterium, Bacillus cereus possesses a thick peptidoglycan layer in its cell wall, which contributes to its ability to retain the crystal violet stain used in the Gram staining process. This feature gives it a characteristic purple appearance under microscopic examination. The rod shape aids in motility, as some strains possess flagella that enable them to move through liquid environments. Bacillus cereus is widely recognized for its role in foodborne illnesses, often associated with improperly stored rice and pasta dishes. When these foods are cooked and then left at room temperature for extended periods, the spores can germinate, leading to the production of harmful enterotoxins that cause gastrointestinal distress. In addition to its pathogenic potential, Bacillus cereus is of interest in biotechnology and agriculture; it can be used in biopesticides and as a model organism for studies of bacterial strategy and survival. The ability of Bacillus cereus to form endospores allows it to withstand extreme environmental conditions, including desiccation, heat, and chemical exposure. This resilience makes it a subject of study in microbial ecology as it plays a significant role in nutrient cycling and the breakdown of organic matter in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus ATCC 14579 Positive Rod Yes 1 1 Aerobe 25 Mesophilic Terrestrial Free living Homo sapiens Chains Sporulating Yes 226900 NC_004722.1 Bac0002280 Pseudomonas batumici str. UCM B-321 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas batumici 226910 JXDG00000000.1 Bac0002281 Chlamydia caviae GPIC "Chlamydia caviae GPIC is a Gram-negative, rod-shaped bacterium that associates closely with host organisms. This microbe thrives optimally at a temperature of 37.0°C, indicative of its adaptation to warm-blooded hosts. As a member of the Chlamydia genus, it is characterized by its obligate intracellular lifestyle, relying on host cells for replication and survival. ↵↵While specific pathogenicity details for C. caviae GPIC are not available, its classification within the Chlamydiaceae family suggests potential involvement in host-associated infections, as many chlamydial species are known to exhibit similar traits. The host-associated habitat emphasizes its dependency on the cellular environment provided by living organisms, which may influence its developmental cycle and transmission dynamics.↵↵The ecological role of Chlamydia caviae GPIC could extend beyond mere pathogenicity, as it might also play a part in microbial communities within host organisms, potentially influencing host health and microbiome composition. This relationship underscores the importance of understanding host-associated microbes in broader ecological contexts, particularly with regard to their interactions within the host's microbiome and their potential impact on host physiology." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia caviae Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 227941 NC_003361.3 Bac0002282 Xanthomonas graminis pv. poae Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas graminis 227946 CXOK00000000.1 Bac0002283 Nocardia tenerifensis str. DSM 44704 "Nocardia tenerifensis str. DSM 44704 is a Gram-positive, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This species is characterized by its non-spore-forming nature, distinguishing it from other members of the Nocardia genus that may exhibit sporulation. The Gram-positive classification indicates the presence of a thick peptidoglycan layer in its cell wall, which can impact its resilience to environmental stresses and influence its interactions with other microorganisms.↵↵Nocardia species are known for their diverse metabolic capabilities and ecological roles, often found in soil and organic matter where they contribute to the decomposition of complex compounds. N. tenerifensis str. DSM 44704 is likely to play a role in nutrient cycling within its habitat, although specific ecological interactions and functions remain to be elucidated. This microbe's optimal growth temperature suggests it may be well-adapted to a mesophilic environment, which could influence its distribution and prevalence in terrestrial ecosystems. Understanding the physiological traits of N. tenerifensis str. DSM 44704 may provide insights into its ecological niche and potential applications in bioremediation or other biotechnological fields." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia tenerifensis Gram-positive rod 29 mesophilic non-spore-forming 228006 QJKF00000000.1 Bac0002284 Histophilus somni 2336 "Histophilus somni 2336 is a Gram-negative, rod-shaped bacterium that demonstrates both aerobic and facultative anaerobic growth capabilities. This microbe thrives optimally at a temperature of 35.0°C, a condition that aligns with the physiological environment of its host. Histophilus somni is primarily host-associated, indicating a close relationship with its biological hosts, which may influence its metabolic and reproductive processes.↵↵As a member of the diverse microbial community found within animal hosts, H. somni 2336 may play a role in the complex interactions between host organisms and their microbial flora. Its capacity to adapt to both aerobic and anaerobic conditions suggests that it can exploit a range of environmental niches within the host, contributing to its survival and proliferation in varied microenvironments. This adaptability may also facilitate its involvement in host-associated metabolic processes or interactions with other microbial species, underscoring the importance of studying this bacterium within the context of its ecological niche. Understanding the dynamics of H. somni 2336 in its host environment could provide insights into microbial interactions and their implications for host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 228400 NC_010519.1 Bac0002285 Hyphomonas neptunium ATCC 15444 "Hyphomonas neptunium, a marine member of the dimorphic prosthecate bacteria (DPB) differs from C. crescentus in that H. neptunium uses its stalk as a reproductive structure. DPB are alpha-proteobacteria that reproduce in an asymmetric manner rather than by binary fission and are of interest as simple models of development. This organism shares more genes with Cauobacter crescentus than it does with Silicibacter pomeroyi (a closer relative according to 16S rRNA phylogeny).; however C.crescentus is also a DPB. Analysis of the H.neptunium genome indicates that it relies upon a heterotrophic strategy utilizing a wide range of substrates, that its cell cycle is likely to be regulated in a similar manner to that of C. crescentus, and that the outer membrane complements of H. neptunium and C. crescentus are remarkably similar. H. neptunium swarmer cells are highly motile via a single polar flagellum. With the exception of cheY and cheR, genes required for chemotaxis were absent in the H. neptunium genome. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas neptunium ATCC 15444 Negative Rod Yes 1 2 Aerobe 37 Mesophilic Aquatic Free living Singles 228405 NC_008358.1 Bac0002286 Nitrosomonas europaea ATCC 19718 Nitrosomonas europaea is a Gram-negative obligate chemolithoautotroph that can derive all its energy and reductant for growth from the oxidation of ammonia to nitrite. It participates in the biogeochemical N cycle in the process of nitrification. (HAMAP: NITEU) Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas europaea ATCC 19718 Negative NA Yes 1 2 Aerobe 0 Mesophilic Multiple No 228410 NC_004757.1 Bac0002287 Peribacillus asahii str. MA001 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus asahii 228899 QWVS00000000.1 Bac0002288 Maribacter ulvicola "Maribacter ulvicola is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This species thrives at an optimal temperature of 16.0°C, indicating a preference for cooler environments, which may suggest its adaptation to marine or freshwater habitats where such conditions are prevalent. ↵↵As a member of the genus Maribacter, M. ulvicola likely contributes to the microbial diversity in aquatic ecosystems, although specific ecological roles and interactions remain to be elucidated. The non-spore-forming nature of this organism may influence its survival strategies and ecological niche, as it depends on consistent environmental conditions for growth and reproduction. ↵↵Overall, the traits of Maribacter ulvicola highlight its potential significance in biogeochemical cycling within aquatic environments, where temperature and oxygen levels play critical roles in microbial community dynamics. Its adaptation to specific thermal preferences may further illuminate the impact of climate variations on microbial populations in freshwater and marine ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter ulvicola Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 228959 FTMA00000000.1 Bac0002289 Halomonas ventosae str. USBA 854 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas ventosae 229007 PVTM00000000.1 Bac0002290 Halomonas ventosae str. 1_TX Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas ventosae 229007 SNWH00000000.1 Bac0002291 Flavobacterium degerlachei "Flavobacterium degerlachei is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This species is part of the Flavobacteriaceae family, which is characterized by a diverse array of metabolic capabilities and ecological niches. The Gram-negative nature of F. degerlachei indicates a distinctive cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵Flavobacterium degerlachei has been isolated from aquatic environments, suggesting its potential role in the microbial community dynamics of freshwater ecosystems. While the specific ecological roles of F. degerlachei remain to be fully elucidated, its optimal growth at lower temperatures points to its adaptation to cold environments, which may contribute to nutrient cycling and organic matter degradation in such habitats. ↵↵The presence of this bacterium in cold aquatic systems underscores the importance of understanding microbial diversity and function in these ecosystems, particularly in the context of climate change, where shifts in temperature could impact microbial community composition and activity. Thus, F. degerlachei may serve as a model organism for studying the resilience and adaptability of psychrophilic bacteria in fluctuating environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium degerlachei Gram-negative rod 16 psychrotolerant 229203 FNMV00000000.1 Bac0002292 Flavobacterium micromati "Flavobacterium micromati is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This microbe is characterized by its distinct morphological features, which are typical of the Flavobacterium genus. The Gram-negative nature of F. micromati implies that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is indicative of its structural and functional adaptations to diverse environments.↵↵The physiological attributes of F. micromati suggest that it may be well-suited to cooler aquatic habitats, where it could play a role in the degradation of organic matter. This bacterium’s optimal growth temperature aligns with environments such as freshwater or marine ecosystems, particularly those that experience lower thermal regimes. Understanding its growth conditions is crucial for delineating its ecological roles and potential applications in bioremediation or nutrient cycling.↵↵An intriguing aspect of Flavobacterium micromati is its potential interactions with other microbial communities in its native habitat, which may contribute to the overall health and stability of the ecosystem. By participating in the breakdown of complex organic compounds, this bacterium could facilitate nutrient availability for other organisms, highlighting its importance in microbial food webs. Further research may elucidate the specific ecological functions and interactions of F. micromati within its environmental niches." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium micromati Gram-negative rod 16 psychrotolerant 229205 FQWF00000000.1 Bac0002293 Levilinea saccharolytica str. KIBI-1 "Levilinea saccharolytica strain KIBI-1 is a Gram-negative, filamentous bacterium that thrives under strictly anaerobic conditions, with an optimal growth temperature of 37.0°C. As a non-spore-forming organism, it relies on vegetative reproduction for propagation rather than sporulation. ↵↵This organism's filamentous morphology suggests a potential for complex community interactions, as filamentous bacteria often play critical roles in biofilm formation and nutrient cycling in anaerobic environments. The ability to grow optimally at human body temperature indicates a possible adaptation to warm, nutrient-rich habitats, which may include various anaerobic niches in both natural and engineered systems.↵↵Given its anaerobic requirements, Levilinea saccharolytica str. KIBI-1 may participate in the degradation of organic matter in environments devoid of oxygen, contributing to biogeochemical processes such as fermentation. Its metabolic capabilities could position it as a valuable organism in biotechnological applications focused on waste treatment or bioenergy production, where anaerobic conditions are prevalent. Understanding the physiological traits and ecological roles of such organisms is crucial for leveraging their potential in sustainable practices." Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Levilinea Levilinea saccharolytica Gram-negative filament non-motile anaerobic 37 mesophilic non-spore-forming 229921 LGCM00000000.1 Bac0002294 Pseudomonas putida ND6 "Pseudomonas putida ND6 is a Gram-negative, rod-shaped bacterium that typically exists in soil and wastewater environments. This microbe is characterized by its arrangement in single cells, which allows for a versatile adaptive response to varying environmental conditions. As a heterotroph, Pseudomonas putida ND6 derives its energy from organic compounds, enabling it to thrive in nutrient-rich substrates often found in polluted or organic waste environments.↵↵The facultative anaerobic nature of Pseudomonas putida ND6 allows it to grow in both aerobic and anaerobic conditions, providing a significant advantage in dynamic habitats where oxygen levels may fluctuate. This adaptability is crucial for survival and metabolic versatility, especially in contaminated sites where it can contribute to the biodegradation of various organic pollutants.↵↵With its robust metabolic capabilities, Pseudomonas putida ND6 holds potential for bioremediation applications, where its ability to break down environmental contaminants can be harnessed for ecological restoration. The presence of this bacterium in soil and wastewater highlights its role in nutrient cycling and the maintenance of ecosystem health, particularly in environments impacted by human activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 231023 NC_018746.1 Bac0002295 Agromyces cerinus subsp. cerinus Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces cerinus 29 mesophilic 232089 FSRJ00000000.1 Bac0002296 Halomonas alkaliantarctica str. CRSS Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella neptunia 232346 SOCZ00000000.1 Bac0002297 Synechococcus sp. CB0101 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CB0101 232348 NZ_CP039373.1 Bac0002298 Ectothiorhodosinus mongolicus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Ectothiorhodosinus Ectothiorhodosinus mongolicus 233100 FTPK00000000.1 Bac0002299 Mycobacterium tuberculosis variant bovis AF2122/97 "Mycobacterium tuberculosis variant bovis AF2122/97 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This strain is a chemoorganotroph, utilizing organic compounds as its energy source, and is classified as an aerobic organism, necessitating oxygen for growth and metabolism. The optimal growth temperature for M. tuberculosis bovis AF2122/97 is approximately 37.0°C, aligning with the physiological conditions found within its natural host. ↵↵This variant is host-associated, indicating a specialized ecological niche where it interacts closely with host organisms, primarily mammals, which may serve as reservoirs or susceptible hosts. The adaptation of this strain to a host-associated habitat suggests a refined evolutionary strategy that enhances its ability to thrive in specific environments. Understanding these traits can provide insights into the bacterium's ecological dynamics and its potential impacts on host health, particularly in relation to zoonotic transmission. The unique combination of its Gram-positive structure and aerobic metabolism may also influence its interactions with the host immune system and its environmental resilience." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 233413 NC_002945.4 Bac0002300 Streptomyces sp. TN58 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TN58 234612 NZ_CP018870.1 Bac0002301 Rhodococcus erythropolis PR4 "Rhodococcus erythropolis PR4 is a Gram-positive, rod-shaped bacterium that thrives optimally at mesophilic temperatures and functions as a chemoheterotroph. This versatile microbe is often found in diverse environments, including soil, water, and even contaminated sites, where it utilizes organic substances as a source of carbon and energy. As a facultative anaerobe, R. erythropolis PR4 can grow in the presence or absence of oxygen, although it prefers aerobic conditions for optimal metabolism. The Gram-positive nature of R. erythropolis PR4 is characterized by its thick peptidoglycan layer, which provides structural integrity and resistance to certain antibiotics. The rod shape of this bacterium contributes to its efficient motility and allows it to readily colonize various substrates. It is categorized as a mesophile, indicating its preference for moderate temperature ranges, typically between 20-45°C, making it well-adapted to terrestrial environments. As a chemoheterotroph, R. erythropolis PR4 derives energy from the oxidation of organic compounds, which allows it to thrive in nutrient-rich environments. Its facultative anaerobic capabilities enable it to switch metabolic pathways depending on the oxygen availability, providing it an advantage in fluctuating habitats. Rhodococcus erythropolis PR4 is especially notable for its bioremediation potential, as it can degrade a variety of environmental pollutants, including hydrocarbons and heavy metals. This ability makes it a focal point of research in environmental microbiology, particularly for applications in cleaning up oil spills and other forms of contamination. Additionally, it has been studied for its role in industrial biotechnology, where it can be used to produce valuable compounds through bioconversion processes. With its unique metabolic versatility and ecological significance, R. erythropolis PR4 exemplifies a remarkable microbe capable of adapting to and thriving in diverse environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis PR4 Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments Nonsporulating No 234621 NC_012490.1 Bac0002302 Brevibacterium antiquum Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium antiquum 234835 FXZE00000000.1 Bac0002303 Pseudomonas amygdali pv. dendropanacis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 235272 LJQG00000000.1 Bac0002304 Pseudomonas coronafaciens pv. coronafaciens Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 235275 RBPK00000000.1 Bac0002305 Pseudomonas coronafaciens pv. oryzae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 235277 RBOG00000000.1 Bac0002306 Helicobacter hepaticus ATCC 51449 Helicobacter hepaticus is responsible for chronic hepatitis and liver cancer in mice. It has also been linked to inflammatory bowel disease in immunocompromised mice. H.hepaticus does not colonize the stomach but inhabits the lower bowel. (HAMAP: HELHP) Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter hepaticus ATCC 51449 Negative Spirilla Yes 1 2 Aerobe 37 Mesophilic HostAssociated No 235279 NC_004917.1 Bac0002307 Tenuibacillus multivorans "Tenuibacillus multivorans is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and thrive in aerobic conditions, with an optimal growth temperature of 37.0 °C. As a member of the broader genus Tenuibacillus, this species is notable for its distinct morphological and physiological traits that are typical of aerobic, spore-forming bacteria.↵↵The Gram-positive nature of T. multivorans suggests a thicker peptidoglycan layer in its cell wall, which may contribute to its resilience in various environments. Its rod shape facilitates motility and may enhance its ability to colonize different substrates. The capacity to form spores indicates a strategy for survival under unfavorable conditions, allowing the bacterium to withstand nutrient depletion or other stressors. ↵↵With an optimal growth temperature of 37.0 °C, T. multivorans is well-adapted to environments that mimic mammalian body temperatures, which may imply a potential association with warm-blooded organisms or specific ecological niches that provide similar thermal conditions. The reliance on aerobic metabolism points to its adaptation to oxygen-rich environments, which could influence its distribution and interactions within microbial communities.↵↵Understanding the specific ecological roles and interactions of T. multivorans may reveal insights into its potential applications in biotechnology or environmental microbiology, particularly in processes that involve aerobic degradation of organic materials." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Tenuibacillus Tenuibacillus multivorans Gram-positive rod aerobic 37 mesophilic spore-forming 237069 FNIG00000000.1 Bac0002308 Cloacibacterium normanense str. NRS-1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cloacibacterium Cloacibacterium normanense 237258 MKGI00000000.1 Bac0002309 Pseudomonas syringae pv. persicae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 237306 RBRT00000000.1 Bac0002310 Pseudomonas alkylphenolica Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas alkylphenolica 237609 QJRG00000000.1 Bac0002311 Algoriphagus antarcticus str. DSM 15986 "Algoriphagus antarcticus strain DSM 15986 is a Gram-negative, rod-shaped bacterium that exhibits an optimal growth temperature of 16.0 °C and requires aerobic conditions for its metabolism. This psychrotolerant organism is adapted to cold environments, which aligns with its designation reflecting Antarctic origins. The Gram-negative cell wall structure suggests the presence of an outer membrane, which may confer specific advantages in its native habitat, such as resistance to certain environmental stresses.↵↵The aerobic nature of A. antarcticus indicates its reliance on oxygen for energy production, potentially involving respiratory pathways that are efficient at lower temperatures. This trait may enable it to occupy niche environments where oxygen is available, but temperatures remain significantly below the optimal growth conditions for many other microbial species.↵↵Research into the metabolic capabilities of A. antarcticus could reveal insights into its ecological role in Antarctic ecosystems, particularly in nutrient cycling and interactions with other microorganisms. Understanding the adaptive mechanisms of such cold-adapted microbes might also contribute to broader knowledge regarding microbial life in extreme environments, including their potential applications in biotechnology or bioremediation in cold climates." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus antarcticus Gram-negative rod non-motile aerobic 16 psychrotolerant 238540 QUNF00000000.1 Bac0002312 Tsukamurella pseudospumae str. JCM 15929 "Tsukamurella pseudospumae str. JCM 15929 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and is characterized by its inability to form spores. This microbe thrives optimally at a temperature of 25.0 °C, suggesting an adaptation to moderate environmental conditions. The Gram-positive nature of T. pseudospumae indicates a thick peptidoglycan layer in its cell wall, a trait that is common among members of the Actinobacteria phylum to which it belongs. ↵↵The non-sporulating nature of Tsukamurella pseudospumae limits its ability to endure extreme conditions that may otherwise be tolerated by spore-forming bacteria; however, this trait may also reflect a specialization for specific ecological niches where stable conditions prevail. Given its aerobic requirement, this organism likely participates in processes that involve the utilization of oxygen, potentially playing a role in the degradation of organic materials in its environment. ↵↵Further understanding of the ecological role of Tsukamurella pseudospumae str. JCM 15929 may be achieved by investigating its metabolic pathways and interactions within microbial communities, particularly in environments rich in organic carbon, where aerobic bacteria thrive. This could provide insight into its contribution to nutrient cycling and ecosystem dynamics." Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella pseudospumae Gram-positive rod non-motile aerobic 25 mesophilic non-spore-forming 239498 LSRF00000000.1 Bac0002313 Akkermansia muciniphila str. EB-AMDK-15 "Akkermansia muciniphila str. EB-AMDK-15 is a Gram-negative, anaerobic cocci that typically exists in host-associated environments, thriving optimally at a temperature of 37.0°C. This strain is characterized by its unique cellular arrangement, where cells predominantly form pairs and can also be observed as singles. ↵↵As a member of the Akkermansia genus, this strain is known to inhabit mucosal surfaces, suggesting a specialized role in the microbiota of its host. Its anaerobic nature indicates an adaptation to environments devoid of oxygen, which is common in the gastrointestinal tract where it can contribute to host health. The ability to persist in such ecological niches may be linked to its metabolic capabilities, particularly in utilizing mucin as a carbon source, thus potentially influencing gut health and homeostasis.↵↵The presence of Akkermansia muciniphila, including strain EB-AMDK-15, in the gut microbiome is emerging as a significant aspect of microbial ecology, with implications for gut barrier function and overall metabolic health. Understanding its specific traits and behaviors could provide insights into the complex interactions within the gastrointestinal microbiota and their impact on host physiology." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 NZ_CP025830.1 Bac0002314 Akkermansia muciniphila str. EB-AMDK-17 "Akkermansia muciniphila strain EB-AMDK-17 is a Gram-negative, anaerobic coccus that primarily exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, suggesting its adaptation to a host-associated environment, likely reflecting its role in the gastrointestinal tract of various organisms. ↵↵As a member of the Akkermansia genus, this strain is known to be involved in the metabolism of mucin, a glycoprotein component of mucus, which indicates a specialized niche within the mucosal layer of the gut. The ability to thrive in anaerobic conditions further emphasizes its adaptation to the gut microbiome, where oxygen levels are minimal. ↵↵The presence of Akkermansia muciniphila in the gut has been associated with various health benefits, including modulation of host metabolism and immune responses, although specific interactions and implications for strain EB-AMDK-17 remain to be elucidated. Understanding the functional capabilities and ecological roles of this strain can provide insights into its potential contributions to gut homeostasis and overall host health." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 NZ_CP025832.1 Bac0002315 Akkermansia muciniphila "Akkermansia muciniphila is a Gram-negative, rod-shaped bacterium categorized as a mesophile, with a temperature preference typically around 37°C. It is a chemoheterotroph, deriving energy from the fermentation of mucin, a glycoprotein found in mucus, and it primarily inhabits the human gastrointestinal tract, particularly the intestines. This anaerobic microbe thrives in low-oxygen environments, making it an obligate anaerobe.As a member of the human gut microbiome, Akkermansia muciniphila plays a crucial role in maintaining gut health and integrity. Its ability to degrade mucin allows it to utilize the mucus layer as both a habitat and a nutrient source, contributing to the maintenance of the gut barrier. By doing so, it helps modulate the immune system and prevent the translocation of pathogens. Furthermore, its presence has been linked to various health outcomes, including metabolic health and weight regulation, highlighting its importance in human physiology. Akkermansia muciniphila has garnered significant interest in recent years due to its potential as a probiotic. Studies suggest that higher levels of this microbe are associated with lower levels of obesity, insulin resistance, and inflammation. Additionally, it has been shown to improve metabolic disorders in animal models, prompting research into its therapeutic potential for conditions like diabetes and cardiovascular diseases. As gut microbiota research continues to evolve, Akkermansia muciniphila stands out for its unique role in gut homeostasis and its promising implications for human health and disease management." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 PJKA00000000.1 Bac0002316 Akkermansia muciniphila str. CBA5201 "Akkermansia muciniphila str. CBA5201 is a Gram-negative, anaerobic bacterium characterized by its cocci shape, which typically arranges in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, reflecting its adaptation to host-associated environments. Akkermansia muciniphila is known for its role in the gut microbiota, where it contributes to the degradation of mucin, a key component of the intestinal mucus layer.↵↵As an anaerobe, A. muciniphila str. CBA5201 is well-suited to the low-oxygen conditions prevalent in the gastrointestinal tract, allowing it to thrive in this niche while potentially influencing host health through its metabolic activities. Notably, its presence in the gut microbiome may play a crucial role in maintaining the integrity of the mucosal barrier, suggesting its involvement in the host's immune response and overall metabolic homeostasis.↵↵The unique ability of Akkermansia muciniphila to utilize mucin as a carbon source underscores its potential significance in the modulation of gut health and its impact on host-microbe interactions. Further exploration of its functional capacity may provide insights into its contributions to gut ecology and its implications for host well-being." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 NZ_CP033388.1 Bac0002317 Thermovibrio guaymasensis str. DSM 15521 Pseudomonadati Aquificota Aquificia Desulfurobacteriales Desulfurobacteriaceae Thermovibrio Thermovibrio guaymasensis anaerobic 240167 RBIE00000000.1 Bac0002318 Desulfurobacterium atlanticum Pseudomonadati Aquificota Aquificia Desulfurobacteriales Desulfurobacteriaceae Desulfurobacterium Desulfurobacterium atlanticum anaerobic 240169 FZOB00000000.1 Bac0002319 Trichormus variabilis ATCC 29413 "Trichormus variabilis ATCC 29413 is a filamentous, Gram-negative bacterium characterized by its unique cell arrangement, which consists of single filaments. This microbe is classified as a heterotroph, indicating that it derives its energy from organic compounds rather than photosynthesis or inorganic sources. T. variabilis thrives in diverse habitats, suggesting a broad ecological adaptability that allows it to occupy various niches in the environment. As an obligate aerobe, it requires oxygen for growth, which indicates its metabolic pathways are likely optimized for aerobic respiration.↵↵The filamentous structure of T. variabilis may confer advantages in its ecological interactions, potentially allowing for efficient nutrient acquisition and colonization within its habitat. Additionally, the presence of this organism in multiple environments underscores its versatility and may play a role in biogeochemical cycling processes. Understanding the ecological roles of such filamentous bacteria can provide insights into their contributions to nutrient dynamics and microbial community structures in various ecosystems." Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Trichormus Trichormus variabilis Negative Filamentous Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Filaments - Singles 240292 NC_007411.1 Bac0002320 Secundilactobacillus paracollinoides Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus paracollinoides 240427 NZ_CP014927.1 Bac0002321 Salegentibacter holothuriorum "Salegentibacter holothuriorum is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is characterized by its non-spore-forming nature. This microorganism thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler aquatic environments. The Gram-negative classification indicates that S. holothuriorum possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various environmental conditions.↵↵The aerobic requirement of S. holothuriorum highlights its dependence on oxygen for metabolic processes, which is typical for many marine bacteria. This trait may influence its distribution in marine ecosystems and its interactions with other microbial communities. Given its optimal growth temperature, S. holothuriorum may play a significant role in nutrient cycling within cold-water habitats, such as deep-sea environments or temperate coastal regions.↵↵The presence of S. holothuriorum in these ecosystems could also imply its potential involvement in the degradation of organic matter, contributing to the overall health and stability of marine ecosystems. Its adaptation to specific temperature and oxygen conditions may reflect a broader ecological niche that warrants further exploration to understand its role in marine microbiomes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter holothuriorum Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 241145 FUYY00000000.1 Bac0002322 Desulfovibrio ferrophilus str. IS5 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio ferrophilus 241368 NZ_AP017379.1 Bac0002323 Candidatus Burkholderia verschuerenii str. UZHbot4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Candidatus Burkholderia verschuerenii 242163 LFJJ00000000.1 Bac0002324 Burkholderia mallei ATCC 23344 "Burkholderia mallei is the etiologic agent of glanders, a disease that is often fatal. Its natural reservoir are horses and other equines, but it can be occasionally transmitted to humans either by inhalation or through breaks in the skin. It is an obligate animal pathogen, with an intracellular localization. B. mallei is highly infectious as an aerosol and was used as a biological weapon in the American Civil War and in both World Wars. Unlike the related bacterium B.pseudomallei it is non-motile. One of its virulence factors has been identified as the type III secretion system, another as the newly characterized type VI (T6S). Strain NCTC 10229 will be used for comparative genomics. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei ATCC 23344 Negative Rod No 1 2 Aerobe Mesophilic HostAssociated Free living Homo sapiens Yes 243160 NC_006348.1 Bac0002325 Dehalococcoides mccartyi 195 "Dehalococcoides mccartyi 195 is a Gram-positive cocci that typically exists as single cells and thrives in various anaerobic environments. This microbe is classified as a chemolithotroph, indicating its ability to obtain energy through the oxidation of inorganic compounds, which is essential for its survival in diverse habitats. Optimal growth occurs at a temperature of approximately 35.0°C, suggesting a mesophilic adaptation that may allow it to inhabit a range of environments, including those influenced by human activities.↵↵As a strictly anaerobic organism, D. mccartyi 195 plays a pivotal role in bioremediation processes, particularly in the dehalogenation of toxic compounds such as chlorinated solvents. Its metabolic capabilities render it a key player in the degradation of environmental pollutants, contributing to the detoxification of contaminated sites. This unique trait underscores its potential utility in sustainable environmental management practices.↵↵The ability of D. mccartyi 195 to thrive in diverse anaerobic environments illustrates its ecological versatility and highlights its significance in the microbial communities involved in biogeochemical cycling and pollutant degradation. Understanding the precise ecological roles of such microbes can enhance our strategies for environmental remediation and the management of contaminated ecosystems." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi Positive Cocci No 1 1 Anaerobe 35 Chemolithotroph Mesophilic Multiple Free living Singles 243164 NC_002936.3 Bac0002326 Mycobacterium avium 104 "Mycobacterium avium 104 is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in all body sites of various species, including humans, birds, and animals, and is an obligate aerobe. The gram-positive characteristic indicates that the microbe's cell wall retains the crystal violet stain used in the gram staining procedure, resulting in a purple appearance under a microscope. Its rod-shaped morphology is typical of the Mycobacterium genus, allowing it to survive in diverse environments. As a mesophilic microbe, Mycobacterium avium 104 grows best in temperatures between 20-45°C, making it well-adapted to infecting hosts with a similar temperature range.As a chemoheterotroph, Mycobacterium avium 104 relies on organic compounds for energy and carbon, obtaining these nutrients by breaking down complex molecules from its host or environment. This versatility enables the microbe to inhabit various body sites, including the respiratory, gastrointestinal, and genitourinary tracts, among others. The obligate aerobe nature of Mycobacterium avium 104 means it requires oxygen to grow, which is why it is often found in areas with high oxygen levels, such as the lungs. Mycobacterium avium 104 has been researched for its potential to treat various diseases, including cancer, due to its ability to target and infect cancer cells, and its unique characteristics make it a valuable subject for further study, particularly in the development of novel therapeutic strategies." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium 104 Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 243243 NC_008595.1 Bac0002327 Photorhabdus laumondii subsp. laumondii TTO1 "**Photorhabdus laumondii subsp. laumondii TTO1** is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration, indicating its ability to thrive in both aerobic and anaerobic environments. This subspecies is nonsporulating, which suggests that it does not form spores as a means of survival under adverse conditions. Instead, it is typically associated with hosts, indicating a potential symbiotic or parasitic relationship, although specific interactions are not delineated in the available data.↵↵As a member of the genus *Photorhabdus*, this bacterium is known to associate with nematodes, specifically within the context of insect pathogenicity. The facultative nature of its oxygen requirements implies a versatile metabolic capability, enabling it to adapt to varying oxygen levels within its host's environment. This adaptability may play a critical role in its survival and proliferation within host organisms.↵↵The ecological significance of *Photorhabdus laumondii subsp. laumondii TTO1* may extend beyond its immediate interactions with hosts; its metabolic versatility might contribute to nutrient cycling within its habitat, particularly in the context of organic matter decomposition or host tissue breakdown. This aspect highlights the potential role of this bacterium in ecosystems where it is present, offering insights into its contributions to microbial community dynamics and nutrient cycles in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus laumondii Negative Rod Yes 1 2 Facultative Mesophilic HostAssociated Symbiotic Nonsporulating 243265 NC_005126.1 Bac0002328 Mycoplasma arthritidis 158L3-1 "This genus currently comprizes more than 120 obligate parasitic species found in the wide spectrum of hosts, including humans, animals, insects and plants. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invation, results in prolonged intracellular persistence that may cause lethality. One mechanism by which many mycoplasmas evade the host's adaptive immune responses is through the phase-variable production of critical surface proteins. In some cases, phase variation is achieved by slipped-strand mispairing (SSM) at a run of homonucleotides located upstream of the gene's coding region. Gain or loss of nucleotides in this region acts as an ON/OFF switch for promoter activity by changing the spacing between the promoter's -10 and -35 regions. All mycoplasmas are phenotypically distinguished from other bacteria by their small size (0.3-0.8 micron in diameter) and lack of a cell wall. The latter is one of the major traits that puts them in the separate taxonimic group of microorganisms, class Mollicutes. The cell membrane is rich in protein component (up to two thirds of the membrane mass) that to a great extent consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells and pathogenic invasion. Most mycoplasmas are non-motile, with the exception of a few flask-shaped human and animal pathogens (M. pneumoniae, M. genitalium, M. gallisepticum, M. pulmonis and M. mobile). Motile mycoplasmas glide over surfaces by an unknown mechanism that is suspected to employ an actin-like cytoskeletal component as well as motility proteins unique for this microbial group. Cell division proceeds via normal binary fission or via elongation of a parent cell to multinucleate filaments and subsequent breakup into coccoid bodies. Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. Examination of the mycoplasmal genomic data indicates the biochemical pathways where gene reductions took place, and helps define the set of genes essential for a minimal self-replicating cell. During their evolution, mycoplasmas appear to have lost all the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in the requirement of the full spectrum of the substrates and factors taken up from the host or from the complex artificial culture medium. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus depend mostly on glycolysis as an ATP-denerating pathway. Mycoplasma arthritidis (strain 158L3-1) causes arthritis in both rats and mice. This strain carries a lysogenic bacteriophage, MAV1, integrated into the chromosome. MAV1 supplies important virulence factors to the bacterium. Most mycoplasma rely on the glycolytic pathway for energy production, but several species such as Mycoplasma arthritidis are nonglycolytic and generally catabolize arginine as a major source of energy. The absence of genes in M. arthritidis coding for hexokinase and phosphofuctokinase is consistent with an organism that does not perform glycolysis. (EBI Integr8)" Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma arthritidis 158L3-1 Negative Cocci No 1 1 Facultative 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating No 243272 NC_011025.1 Bac0002329 Thermotoga maritima MSB8 "Rod-shaped thermophilic marine bacterium that metabolizes many simple and complex carbohydrates including glucose, sucrose, starch, cellulose, and xylan. (HAMAP: THEMA)" Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga maritima MSB8 Negative Rod No 1 2 Anaerobe 80 Hyperthermophilic Specialized No 243274 NC_000853.1 Bac0002330 Treponema denticola ATCC 35405 "Treponema denticola ATCC 35405 is a Gram-negative, spiral-shaped bacterium that thrives under anaerobic conditions, functioning as a chemoheterotroph. This microbe is primarily found in the oral cavity, especially within periodontal tissues where it contributes to oral diseases such as periodontitis. It is considered an obligate anaerobe, meaning that it cannot grow in the presence of oxygen, relying instead on the fermentation of organic compounds to meet its nutrition needs. The spiral shape of Treponema denticola is characteristic of the spirochete family, which enables its motility through a unique axial filament structure. This allows the bacterium to navigate the viscous environment of the subgingival biofilm and adheres to tooth surfaces and periodontal pockets. It is typically found in symbiosis with other oral bacteria, forming complex microbial communities that influence host health and disease progression. As a chemoheterotroph, T. denticola derives energy from organic substrates, which include polysaccharides and proteins in the oral environment. This metabolic pathway is vital for its survival, especially in the nutrient-poor conditions of the periodontal pocket. This microbe is also noteworthy for its role in the pathogenicity of periodontal disease. It is linked to the degradation of the periodontal tissue, influencing inflammation and providing a favorable environment for further microbial colonization. Furthermore, T. denticola produces virulence factors such as proteases and endotoxins, contributing to tissue damage and the immune response. Its presence is often associated with the severity of periodontal disease, making it a target for therapeutic strategies aimed at improving oral health." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola ATCC 35405 Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 243275 NC_002967.9 Bac0002331 Treponema pallidum subsp. pallidum str. Nichols "Treponema pallidum, is a helical to sinusoidal spirochaete with 2 membranes, a thin peptidoglycan layer and flagella that lie in the periplasmic space. It is the causative agent of syphilis, plays a role in the transmission and acquisition of HIV, and is a major cause of stillbirth and perinatal morbidity in the developing world. Even if the primary infection is localized, bacteria rapidly disseminate and cause manifestations in the cardiovascular and nervous systems. It is an obligate human parasite.The first T.pallidum strain to be sequenced was strain Nichols, which was isolated in 1912 from the cerebrospinal fluid of patient with secondary syphilis. It has since been passed in rabbits for nearly a century. This Chicago strain was isolated in 1951, has not been passed continually in rabbits and has had an important role in research on antigenic variation, immune escape and pathogen persistence. There are 44 nucleotide substitutions, 21 deletions and 75 insertions compared to the Nichols genome (adapted from PMID). (EBI Integr8)" Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema pallidum Nichols Negative Spirilla No 1 2 Anaerobe Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 243276 NC_021490.2 Bac0002332 Vibrio cholerae O1 biovar El Tor str. N16961 "Vibrio cholerae O1 biovar ElTor str. N16961.This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. It contains 2 chromosomes. The first, and larger chromosome, contains many essential cell functions, as well as virulence genes contained within pathogenicity islands (PAIs). One major pathogenicity determinant is encoded within a PAI that is contained inside an integrated phage (CTXphi) on chromosome 1 that codes for the cholera toxin, an adenylate cyclase. Once the toxin is injected into host cells, it results in secretion of chlorine ions, which leads to increased water secretion, dehydration, and eventually, death. Up to 20 litres of water a day may be lost. The second chromosome also has important cell functions, but has a preponderance of genes associated with energy and transport functions, including signal transduction systems, and in addition, DNA repair enzymes. Chromosome 2 also has the integron island, a large variable region of the chromosome that functions as a gene capture system, some of which are associated with antibiotic resistance. There are 105 genes that have copies on both chromosomes. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae N16961 Negative CurvedShaped Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Homo sapiens Singles Nonsporulating Yes 243277 NC_002505.1 Bac0002333 Mycobacterium nebraskense "Mycobacterium nebraskense is a rod-shaped, aerobic to microaerophilic bacterium that thrives optimally at a temperature of 32.0°C. This microbe is non-spore-forming and is primarily found in well water, indicating a potential ecological niche in freshwater environments. ↵↵The aerobic nature of M. nebraskense suggests that it requires oxygen for its metabolic processes, which may limit its distribution to oxygen-rich habitats. Its adaptation to well water environments potentially allows it to exploit specific nutrient sources and ecological interactions present in these aquatic systems. Furthermore, being a member of the Mycobacterium genus, this organism may exhibit complex lipid metabolism, which is characteristic of many mycobacterial species.↵↵The presence of M. nebraskense in well water raises interesting questions about its role in the microbial community, particularly regarding its interactions with other microorganisms and its influence on water quality. Its non-sporulating nature may also affect its survival strategies in fluctuating environmental conditions, making it a subject of interest for studies on microbial resilience and adaptation. Understanding the ecological role of M. nebraskense could provide insights into the dynamics of microbial communities in freshwater habitats and their responses to environmental changes." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium nebraskense rod aerobic / microaerophile 32 mesophilic well water non-spore-forming 244292 LQPH00000000.1 Bac0002334 Escherichia coli O26:H11 str. 21765 "Escherichia coli O26:H11 str. 21765 is a Gram-negative, rod-shaped bacterium characterized by its occurrence primarily in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, and is optimally adapted to temperatures around 37.0°C, which is consistent with the physiological conditions of its host-associated habitat. ↵↵E. coli O26:H11 str. 21765 is part of a diverse group of E. coli strains, some of which are known to inhabit the intestines of warm-blooded animals, including humans. The specific ecological niche occupied by this strain may influence its interactions with the host microbiome and its potential roles in nutrient cycling and host health. Given its association with host environments, further investigation into the ecological and biological activities of E. coli O26:H11 str. 21765 could provide insights into its contributions to gut microbiota stability and its responses to varying oxygen levels within the gastrointestinal tract. Understanding the specific adaptations of this strain may also shed light on its potential interactions with other microbial species present in the host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 244319 CDLB00000000.1 Bac0002335 Escherichia coli O26:H11 "Escherichia coli O26:H11 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a member of the Enterobacteriaceae family and demonstrates facultative anaerobic growth, enabling it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 37.0°C, which aligns with the physiological temperature of its warm-blooded hosts.↵↵E. coli O26:H11 is primarily found in host-associated habitats, where it may interact with the gut microbiota of mammals, including humans. The ecological dynamics within these environments can influence the behavior and characteristics of this microbe, potentially affecting its metabolic activities and interactions with other microbial species. Understanding the specific ecological roles of E. coli O26:H11 within host-associated environments is essential for comprehending its overall biology and potential implications for host health.↵↵This bacterium's adaptability to varying oxygen levels alongside its association with warm-blooded hosts suggests that it may play a significant role in nutrient cycling and metabolic processes within the gastrointestinal microbiome, highlighting the intricate relationships between microbial inhabitants and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 244319 NZ_CP031923.1 Bac0002336 Ruminococcus sp. YE71 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. YE71 244362 FPIR00000000.1 Bac0002337 Klebsiella variicola str. 342 "Klebsiella variicola str. 342 is a Gram-negative, rod-shaped bacterium characterized by its ability to form chains, pairs, and single cells. This strain is nonsporulating and exhibits facultative anaerobic metabolism, enabling it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for K. variicola str. 342 is approximately 37.0°C, which aligns with the physiological temperature of many host organisms, suggesting a potential adaptation to a host-associated habitat.↵↵Klebsiella variicola, as a member of the Klebsiella genus, is known to inhabit diverse environments, often in association with various plants and animals. The facultative anaerobic nature of this strain may provide advantages in fluctuating oxygen levels within host-associated environments, allowing it to colonize and persist in different niches. The capacity to grow in pairs and chains may also influence its interactions within microbial communities, potentially facilitating cooperative behaviors or biofilm formation.↵↵Overall, the traits of K. variicola str. 342 highlight its adaptability to host-associated environments, which may play a significant role in its ecological dynamics and interactions with other microorganisms, as well as its potential functional contributions to the microbiome of the host it associates with." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella variicola Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 244366 NC_011283.1 Bac0002338 Bradyrhizobium betae "Bradyrhizobium betae is a Gram-negative bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. As a member of the Rhizobiaceae family, B. betae is recognized for its symbiotic relationship with plants, particularly in the context of nitrogen fixation. This microbe plays a crucial role in enhancing soil fertility by converting atmospheric nitrogen into a form that is accessible to plants, thereby supporting agricultural productivity.↵↵The Gram-negative nature of B. betae indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may influence its interactions with host plants and soil environments. The aerobic requirement of this bacterium suggests that it is adapted to environments where oxygen is readily available, such as well-aerated soils.↵↵Bradyrhizobium betae is particularly noteworthy for its potential use in sustainable agriculture, as its nitrogen-fixing capabilities can reduce the need for synthetic fertilizers, thereby minimizing environmental impact. Understanding the optimal growth conditions and physiological traits of B. betae can inform agricultural practices that leverage this microbe’s beneficial properties. Its role in nitrogen fixation also highlights the interconnectedness of microbial life and plant health, underscoring the importance of maintaining biodiversity in soil ecosystems for enhanced agricultural resilience." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium betae Gram-negative aerobic 29 mesophilic 244734 MZXW00000000.1 Bac0002339 Anaerospora hongkongensis str. DSM 15969 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Anaerospora Anaerospora hongkongensis anaerobic 244830 SLUI00000000.1 Bac0002340 Yoonia vestfoldensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Yoonia Yoonia vestfoldensis 245188 NZ_CP021433.1 Bac0002341 Vibrio crassostreae str. 30_P_66 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio crassostreae 246167 SMAX00000000.1 Bac0002342 Maridesulfovibrio ferrireducens Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio ferrireducens 246191 FNGA00000000.1 Bac0002343 Mycolicibacterium smegmatis MC2 155 str. mc2 155 "Mycolicibacterium smegmatis MC2 155 str. mc2 155 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoorganotroph, utilizing organic compounds as its energy source, and it requires oxygen for growth, categorizing it as an aerobic organism. The optimal growth temperature for M. smegmatis MC2 155 is approximately 37.0°C, which aligns with the body temperature of warm-blooded hosts, suggesting it may thrive in host-associated environments.↵↵M. smegmatis is commonly found in environments associated with mammals, which may contribute to its adaptation as a commensal organism within various host niches. While the specific ecological roles of this bacterium remain to be fully elucidated, its association with host organisms and its metabolic capabilities point to a potential role in nutrient cycling and microbial interactions within host-associated microbiomes. Understanding the traits of M. smegmatis MC2 155 can provide insights into its biological functions and its potential contributions to the microbial community dynamics in host-associated habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium smegmatis Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 246196 NC_018289.1 Bac0002344 Hydrogenivirga caldilitoris str. DSM 16510 "Hydrogenivirga caldilitoris strain DSM 16510 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 45.0°C and exhibits strict anaerobic growth conditions. This thermophilic microbe is characterized by its adaptability to high-temperature environments, likely contributing to its ecological role in geothermal habitats where oxygen is limited. ↵↵As a member of the domain Bacteria, H. caldilitoris is expected to utilize anaerobic metabolic pathways for energy production, which could involve the fermentation of organic substrates or the reduction of inorganic compounds in its environment. The specific metabolic capabilities of this strain remain to be thoroughly elucidated, but its anaerobic nature suggests it plays a significant role in biogeochemical cycles within its native habitat.↵↵The ability of H. caldilitoris to thrive at elevated temperatures positions it as a potential candidate for biotechnological applications, particularly in processes that require thermophilic microorganisms. Its unique adaptations to extreme conditions highlight the diverse strategies employed by bacteria to survive and flourish in niche environments. Consequently, studying H. caldilitoris may provide insights into microbial life in extreme habitats, as well as potential applications in industrial biotechnology and environmental sustainability." Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Hydrogenivirga Hydrogenivirga caldilitoris Gram-negative rod anaerobic 45 thermophilic 246264 RCCJ00000000.1 Bac0002345 Staphylococcus equorum str. C2014 "Staphylococcus equorum str. C2014 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism and thrives optimally at a temperature of 30.0°C. This strain is classified as a chemoheterotroph, indicating that it derives energy through the oxidation of organic compounds rather than photosynthesis or inorganic substances. S. equorum is known to inhabit diverse environments, reflecting its adaptability and potential versatility in utilizing various organic substrates for growth.↵↵The ability of S. equorum str. C2014 to function under both aerobic and anaerobic conditions may provide advantages in fluctuating environmental contexts, allowing it to occupy niches where oxygen levels are variable. This trait is particularly relevant in habitats where organic matter decomposition occurs, as it can exploit the available nutrients effectively. Furthermore, S. equorum's nonsporulating nature suggests that it relies on other survival strategies to endure adverse conditions rather than forming spores, which is a characteristic feature of many other bacterial genera.↵↵Understanding the ecological roles of strains like S. equorum str. C2014 can shed light on their contributions to microbial communities, particularly in the context of organic matter cycling and nutrient dynamics in various habitats. The metabolic capabilities of this strain may also play a role in its interactions with other microorganisms, influencing community structure and function in its ecological niche." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus equorum Positive Cocci No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 246432 NZ_CP013719.1 Bac0002346 Staphylococcus equorum "Staphylococcus equorum is a Gram-positive bacterium characterized by its cocci shape and is classified as a facultative anaerobe. This microbe thrives optimally at temperatures ranging from 30°C to 37°C, making it mesophilic. It is a chemoheterotroph, deriving its energy from organic compounds. Staphylococcus equorum has been isolated from various body sites in several species, primarily found in the skin and mucous membranes of mammals, including horses, cattle, and humans. As a Gram-positive organism, Staphylococcus equorum possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in Gram staining, appearing blue or purple under the microscope. Its cocci shape contributes to its ability to form clusters, resembling grapes, which is characteristic of the Staphylococcus genus. The facultative anaerobic nature of this microbe allows it to thrive in both aerobic and anaerobic environments, making it versatile in colonizing different habitats. As a chemoheterotroph, Staphylococcus equorum metabolizes organic substrates for energy and is generally found in nutrient-rich environments such as skin, where it can utilize compounds from the host. Notably, Staphylococcus equorum has gained attention for its role in the fermentation process within some cheese production, where it can contribute to the development of specific flavor profiles and textures. Its potential for biotechnological applications extends beyond food, as it is also being studied for its interactions with other microorganisms within the skin microbiome, potentially influencing skin health and disease. Additionally, its presence in animal hosts highlights the importance of studying this microbe in veterinary medicine and its implications in zoonotic disease dynamics." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus equorum Positive Cocci No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 246432 LNPX00000000.1 Bac0002347 Metabacillus indicus str. DSM 16189 "Metabacillus indicus str. DSM 16189 is a rod-shaped bacterium characterized by its distinct morphological features. This strain is part of the genus Metabacillus, which is known for its role in various biochemical processes. While specific physiological traits are not detailed in the current data set, the rod shape of M. indicus suggests adaptability to diverse environments, potentially facilitating nutrient uptake and colonization in various substrates. ↵↵The classification of M. indicus underlines its relevance in microbiological studies, particularly in fermentation processes where rod-shaped bacteria are often prominent contributors. The genus Metabacillus is generally associated with anaerobic conditions, indicating that M. indicus may thrive in environments where oxygen is limited, such as in certain gut microbiomes or in decomposing organic matter.↵↵This strain's rod shape not only reflects its evolutionary adaptations but may also influence its interactions with other microorganisms within its habitat. Understanding the dynamics of such rod-shaped bacteria could provide insights into microbial community structures and their functional roles in biogeochemical cycles. Therefore, the study of Metabacillus indicus str. DSM 16189 may reveal crucial information regarding its contributions to ecosystem functioning and potential applications in biotechnology, particularly in fermentation and bioremediation processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Metabacillus Metabacillus indicus Rod 246786 JNVC00000000.2 Bac0002348 Bacteroides cellulosilyticus "Bacteroides cellulosilyticus is an anaerobic, Gram-negative, rod-shaped bacterium classified as a mesophile, utilizing a chemoheterotrophic metabolism with energy derived from the fermentation of complex carbohydrates. This microbe predominantly resides in the human gastrointestinal tract, as well as in the intestines of various animals, and is known for its role in the breakdown of cellulose and other polysaccharides. As a mesophile, B. cellulosilyticus thrives at moderate temperatures, typically between 30°C and 37°C, which aligns well with the warm environment of the gut. Its chemoheterotrophic metabolism allows it to utilize organic compounds, particularly from dietary fibers, as its primary energy source. This capability not only aids in the digestion of complex carbohydrates but also contributes to the overall health of the host by providing essential short-chain fatty acids through fermentation processes. Being Gram-negative, B. cellulosilyticus possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structural feature can affect its susceptibility to certain antibiotics and its interaction with the host immune system. The rod shape of the bacterium facilitates mobility and colonization within the gut environment, where it plays a pivotal role in maintaining a balanced microbiota. Bacteroides cellulosilyticus also exhibits an important ecological function, as it helps in the recycling of organic matter within the intestines, aiding both human and animal hosts in nutrient absorption and overall gut health. Its ability to break down cellulose is particularly significant, as it allows for the utilization of plant materials that would otherwise be indigestible, thereby enhancing nutrient availability. This microbe exemplifies the intricate relationships within the gut microbiome and underscores the importance of microbial diversity in health and digestion." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus Negative Anaerobe gastrointestinal tract 246787 RCXI00000000.1 Bac0002349 Thermococcus sp. AM4 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. AM4 246969 NC_016051.1 Bac0002350 Nocardia farcinica IFM 10152 "Gram-positive, filamentous-growing soil saprophyte. It can cause the disease nocardiosis in humans: an acute, subacute, or chronic infectious disease occurring in cutaneous and pulmonary tissues, and also in the central nervous system.(From http://www.expasy.org/sprot/hamap/NOCFA.html) (BacMap)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia farcinica IFM 10152 Positive Rod Yes 1 1 Aerobe 37 Chemoheterotroph Mesophilic Multiple Free living Homo sapiens Filaments Sporulating Yes 247156 NC_006362.1 Bac0002351 Veillonella rodentium Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella rodentium anaerobic 248315 NZ_LT906470.1 Bac0002352 Haemophilus pittmaniae Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus pittmaniae No 1 Chemoheterotroph Nonsporulating 249188 UGHS00000000.1 Bac0002353 Enterococcus hermanniensis "Enterococcus hermanniensis is a Gram-positive bacterium characterized by its spherical shape and microaerophilic growth requirements. This species thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments compared to many other Enterococcus species that typically flourish at higher temperatures. As a member of the Enterococcus genus, E. hermanniensis is likely to exhibit resilience in varied environments, although its specific ecological niches remain to be fully elucidated.↵↵The microaerophilic nature of E. hermanniensis suggests that it requires reduced oxygen levels for optimal growth, which may influence its habitat preferences, potentially involving environments where oxygen is present but not in high concentrations. This can include certain soil environments or specific ecological niches within the gastrointestinal tracts of various hosts. ↵↵Understanding the physiological traits of Enterococcus hermanniensis can provide insights into its ecological roles and metabolic capabilities. For instance, its ability to grow in microaerophilic conditions may play a significant role in nutrient cycling within its habitat, particularly in environments where oxygen levels fluctuate. Further research into the specific environments where this organism is found may illuminate its contributions to microbial communities and ecosystem functions in cooler climates or specific microhabitats that support its growth." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus hermanniensis Gram-positive sphere microaerophile 16 psychrotolerant 249189 JXKQ00000000.1 Bac0002354 Flavobacterium psychrolimnae str. LMG 22018 "Flavobacterium psychrolimnae str. LMG 22018 is a Gram-negative, rod-shaped bacterium that thrives in the cold temperatures of its Antarctic habitat, with an optimal growth temperature of 16.0 °C. This psychrophilic microorganism is adapted to survive and proliferate in extreme cold environments, which typically exert selective pressure on metabolic and physiological processes. ↵↵The rod morphology of F. psychrolimnae suggests structural adaptations that may enhance its survival in low-temperature niches, potentially influencing its nutrient uptake and cellular functions. The psychrophilic nature of this strain points to unique biochemical pathways that facilitate cellular activity at lower temperatures, which could include the production of cold-adapted enzymes that remain functional and efficient under such conditions.↵↵The ecological role of Flavobacterium psychrolimnae str. LMG 22018 within the Antarctic ecosystem may involve the degradation of organic matter, thereby contributing to nutrient cycling in this harsh environment. Its presence highlights the importance of microbial life in extreme climates, particularly in maintaining ecosystem balance and supporting food webs in regions where temperatures are consistently low. Understanding the adaptations of this bacterium could provide insights into microbial resilience and function in polar ecosystems, shedding light on the broader implications of climate change on microbial communities in similar habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrolimnae Gram-negative rod non-motile 16 psychrotolerant Antarctic 249351 QNUX00000000.1 Bac0002355 Gloeobacter violaceus PCC 7421 "Gloeobacter violaceus PCC 7421 is a unicellular cyanobacterium. Cyanobacteria are aquatic and photosynthetic (which results in them being labelled blue-green algae) they live in the water, and can manufacture their own food, they are quite small and usually unicellular, though they often grow in colonies large enough to be visible with the human eye.Gloeobacter violaceus performs photosynthesis in a different part of the cell than other cyanobacteria.Comparison of the assigned gene components with those of other cyanobacteria has unveiled distinctive features of the G. violaceus genome. Genes for PsaI, PsaJ, PsaK, and PsaX for Photosystem I and PsbY, PsbZ and Psb27 for Photosystem II were missing, and those for PsaF, PsbO, PsbU, and PsbV were poorly conserved. cpcG for a rod core linker peptide for phycobilisomes and nblA related to the degradation of phycobilisomes were also missing. Potential signal peptides of the presumptive products of petJ and petE for soluble electron transfer catalysts were less conserved than the remaining portions. These observations may be related to the fact that photosynthesis in G. violaceus takes place not in thylakoid membranes but in the cytoplasmic membrane.A large number of genes for sigma factors and transcription factors in the LuxR, LysR, PadR, TetR, and MarR families could be identified, while those for major elements for circadian clock, kaiABC were not found.The sequenced strain PCC 7421 was found in rock in Switzerland.Phylogenetic analysis using multiple criteria strongly suggest that this strain is a member of early branching lineage. (From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Cyanobacteriota Cyanophyceae Gloeobacterales Gloeobacteraceae Gloeobacter Gloeobacter violaceus PCC 7421 Negative Rod No 1 2 Photoautotroph - Photosynthetic Mesophilic Terrestrial Free living No 251221 NC_005125.1 Bac0002356 Chroococcidiopsis thermalis PCC 7203 "Chroococcidiopsis thermalis PCC 7203 is a spherical-shaped (coccus) cyanobacterium that thrives in extreme environments, specifically within arid hot and cold deserts, such as the Negev Desert in Israel. This organism is well-adapted to survive harsh conditions, which include significant temperature fluctuations and limited water availability. ↵↵Chroococcidiopsis thermalis is characterized by its ability to perform photosynthesis, utilizing sunlight to convert carbon dioxide and water into organic compounds. Its resilience in extreme habitats is attributed to specialized physiological adaptations that enable it to withstand desiccation and high radiation levels. ↵↵Research on Chroococcidiopsis thermalis has revealed its potential for biotechnological applications, particularly in the fields of biofuels and bioremediation. The ability of this cyanobacterium to thrive in conditions that are challenging for most life forms suggests that it may play a crucial role in the biogeochemical cycles of its environment, contributing to nutrient cycling in desert ecosystems. Furthermore, its unique adaptations could provide insights into mechanisms of survival that might inform future studies on extremophiles and their applications in astrobiology, particularly regarding the search for life in extraterrestrial desert-like environments." Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis thermalis Coccus "arid hot and cold deserts; Negev Desert, Israel" 251229 NC_019699.1 Bac0002357 Pseudomonas coronafaciens pv. garcae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 251653 RBSH00000000.1 Bac0002358 Pseudomonas coronafaciens pv. zizaniae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 251700 RBPM00000000.1 Bac0002359 Pseudomonas syringae group genomosp. 3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251701 OLMQ00000000.1 Bac0002360 Pseudomonas syringae pv. viburni Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251703 LJRR00000000.1 Bac0002361 Pseudomonas syringae pv. philadelphi Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251706 RBQB00000000.1 Bac0002362 Pseudomonas syringae pv. primulae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251707 LJRC00000000.1 Bac0002363 Pseudomonas amygdali pv. mellea str. N6801 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 251721 LGLB00000000.1 Bac0002364 Pseudomonas amygdali pv. hibisci Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 251723 LJQN00000000.1 Bac0002365 Pseudomonas amygdali pv. photiniae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 251724 RBSP00000000.1 Bac0002366 Thioalkalivibrio halophilus str. HL17 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio halophilus anaerobic 252474 MUZR00000000.1 Bac0002367 Microbulbifer thermotolerans Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer thermotolerans 252514 FOKT00000000.1 Bac0002368 Natronolimnobius baerhuensis str. CGMCC 1.3597 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronolimnobius Natronolimnobius baerhuensis 253108 MWPH00000000.1 Bac0002369 Soehngenia saccharolytica str. BOR-Y Bacillati Bacillota Tissierellia Tissierellales Tissierellaceae Soehngenia Soehngenia saccharolytica anaerobic 253256 SUSR00000000.1 Bac0002370 Paenibacillus antarcticus str. CECT 5836 "Paenibacillus antarcticus str. CECT 5836 is a rod-shaped, spore-forming bacterium characterized by its facultative anaerobic metabolism and ability to thrive at an optimal temperature of 16.0°C. This microbe exhibits a Gram-positive cell wall structure, which is typical of the genus Paenibacillus, suggesting a robust peptidoglycan layer that contributes to its environmental resilience.↵↵As a spore-forming organism, P. antarcticus str. CECT 5836 has the capacity to endure adverse conditions, allowing it to survive in varied environments, particularly those with fluctuating nutrient availability and temperature. Its facultative anaerobic nature indicates that it can adapt its metabolic processes depending on the availability of oxygen, which enhances its ecological versatility.↵↵Given its optimal growth temperature of 16.0°C, P. antarcticus str. CECT 5836 is likely well-adapted to cold environments, such as polar regions or deep-sea ecosystems. This adaptability not only highlights its potential role in biogeochemical cycles in such niches but also suggests its possible applications in biotechnology, particularly in processes that require microbial activity at lower temperatures. The evolutionary adaptations of this strain to cold habitats may provide insights into microbial survival strategies in extreme environments." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus antarcticus Gram-negative / Gram-positive rod facultative aerobe/anaerobe 16 psychrotolerant spore-forming 253703 LVJI00000000.1 Bac0002371 Aquicella lusitana str. DSM 16500 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Coxiellaceae Aquicella Aquicella lusitana microaerophile 254246 QQAX00000000.1 Bac0002372 Ehrlichia ruminantium str. Welgevonden "Ehrlichia ruminantium is the causative agent of the heartwater disease that affects domestic and wild ruminants. The bacterium is transmitted by ticks of the genus Amblyomma. The disease is present throughout subsaharan Africa and on several Caribbean islands where it represents a major constraint to livestock production. It threatens to invade the Americas. Heartwater is characterized by fever, nervous signs, hydropericardium, hydrothorax, ascites, edema of the lungs, and high mortality. Its name comes from hydropericardium (an excessive amount of fluid within the sac surrounding the heart), which is commonly observed with this disease.(From http://www.expasy.org/sprot/hamap/EHRRG.html) (BacMap)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium Welgevonden Negative Cocci No 1 2 Mesophilic HostAssociated Symbiotic No? 254945 NC_006832.1 Bac0002373 Bradyrhizobium canariense str. UBMA195 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium canariense 255045 NAFI00000000.1 Bac0002374 Brucella lupini str. LUP21 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella lupini 255457 NNRN00000000.1 Bac0002375 Aliarcobacter cibarius Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cibarius 255507 VBUE00000000.1 Bac0002376 Gulosibacter molinativorax "Gulosibacter molinativorax is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0 °C. As a non-spore-forming organism, G. molinativorax relies on its metabolic capabilities to survive in environments conducive to oxygen presence, rather than adopting a dormant state to endure unfavorable conditions. ↵↵The Gram-positive nature of G. molinativorax suggests a robust cell wall structure primarily composed of peptidoglycan, which may confer certain advantages in its ecological niche, such as resilience to osmotic stress. Its rod shape is characteristic of many bacteria within its phylogenetic context, potentially influencing its motility and interactions with other microbial communities.↵↵Given its aerobic requirement and optimal growth temperature, Gulosibacter molinativorax is likely adapted to specific environments where oxygen is readily available, such as certain soil or aquatic habitats. This trait may also suggest a role in biogeochemical cycles, particularly in the breakdown of organic materials in oxygen-rich environments. The combination of its morphological and physiological traits positions G. molinativorax within a niche that may contribute to microbial diversity and ecological functions relevant to nutrient cycling and organic matter decomposition." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gulosibacter Gulosibacter molinativorax Gram-positive rod non-motile aerobic 37 mesophilic non-spore-forming 256821 NZ_CP028427.1 Bac0002377 Bordetella bronchiseptica RB50 "Bordetella bronchiseptica is the cause of chronic respiratory infections in a wide range of animals, but only occasionally in humans. (HAMAP: BORBR)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica RB50 Negative Rod Yes 1 2 Aerobe 35 Mesophilic HostAssociated Yes 257310 NC_002927.3 Bac0002378 Gluconobacter thailandicus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter thailandicus 257438 LHZM00000000.1 Bac0002379 Roseomonas gilardii Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Roseomonas gilardii 257708 NZ_CP015585.1 Bac0002380 Mycolicibacterium cosmeticum str. DSM 44829 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium cosmeticum 258533 CCBB000000000.1 Bac0002381 Mycolicibacterium cosmeticum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium cosmeticum 258533 POTP00000000.1 Bac0002382 Marinilactibacillus piezotolerans "Marinilactibacillus piezotolerans is a Gram-positive, rod-shaped bacterium characterized as a facultative aerobe/anaerobe, with an optimal growth temperature of 37.0°C. This organism does not form spores, which is typical for lactobacilli, and it demonstrates adaptability to varying oxygen levels, enabling it to thrive in diverse environments. ↵↵The Gram-positive nature of Marinilactibacillus piezotolerans suggests a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and potentially influencing its interactions within microbial communities. The rod shape is indicative of its morphology, which may play a role in its metabolic processes and ecological niche. ↵↵Given its optimal temperature, Marinilactibacillus piezotolerans is well-suited for environments that approximate human body temperature, suggesting a potential association with warm-blooded hosts or habitats that maintain similar thermal conditions. Its facultative anaerobic capability allows it to survive in both oxygen-rich and oxygen-poor environments, which may enhance its ecological versatility and resilience. ↵↵The ability to thrive under varying oxygen conditions could also suggest that Marinilactibacillus piezotolerans plays a role in biogeochemical cycles, potentially contributing to fermentation processes and influencing community dynamics in its natural habitats. Understanding the ecological implications of its metabolic flexibility could provide insights into its functional roles in microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Marinilactibacillus Marinilactibacillus piezotolerans Gram-positive rod non-motile facultative aerobe/anaerobe 37 mesophilic non-spore-forming 258723 FOSJ00000000.1 Bac0002383 Psychrobacter arcticus 273-4 "Psychrobacter arcticus 273-4. This strain is part of an analysis of the growth of organisms at and their adaption to low temperature, a study that is being conducted by Michigan State University as a member of NASA's Astrobiology Institute. Insight into how these organisms grow and adapt to life in low temperature environments could aid in understanding transport of microbes through space, either as a contaminant on human spacecraft, or as a passenger on an asteroid or comet. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter arcticus 273-4 Negative Rod No 1 2 Aerobe 22 Heterotroph Psychrophilic Specialized Free living Pairs non-spore-forming No 259536 NC_007204.1 Bac0002384 Methanococcoides burtonii DSM 6242 "The eurypsychrophilic (psychrotolerant) Methanococcoides burtonii (strain DSM 6242) is a strictly anaerobic, slightly halophilic archeon that was isolated from the anoxic and methanesaturated hypolimnion of Ace Lake (Antarctica). It is the best-characterized psychrophilic and methylotrophic archaeon. Motility is via a single monotrichous flagellum. Growth occurs at a temperature between 1.7-29.5oC with optimal growth at 23.4oC. In addition this organism requires 0.1-0.5 M NaCl and either magnesium sulfate or magnesium chloride at a concentration greater than 0.01 M for growth. The genome sequence of the methanogen M. burtonii will enable researchers to identify genes that are required for survival and adaptation of these archaea at cold temperature. Proteins from psychrophiles have more non-charged polar amino acids (Gln and Thr) and less hydrophobic amino acids (Leu). Structural flexibility might be due to fewer salt bridges and fewer Pro residues in loops. (HAMAP: METBU)" Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides burtonii DSM 6242 Cocci No 1 1 Anaerobe 23 Lithotroph Mesophilic Aquatic Free living Nonsporulating No 259564 NC_007955.1 Bac0002385 Asticcacaulis taihuensis "Asticcacaulis taihuensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is characterized as non-spore-forming. This microbe, initially isolated from freshwater environments, highlights its adaptability to oxygen-rich conditions, which is typical of many aquatic microorganisms. The Gram-negative nature of A. taihuensis suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic structure that often contributes to the organism's environmental resilience and interaction with its surroundings.↵↵Due to its rod shape, A. taihuensis may exhibit motility, which could facilitate its movement within aquatic habitats, allowing it to exploit various ecological niches. The absence of sporulation indicates that this species relies on alternative survival strategies in fluctuating environmental conditions, potentially forming biofilms or engaging in other forms of microbial interactions. ↵↵The ecological role of A. taihuensis within its habitat may include participation in nutrient cycling, particularly in the degradation of organic materials, which can influence the overall health of freshwater ecosystems. Understanding the traits of A. taihuensis could provide insights into the functional diversity of microbial communities in aquatic environments, particularly in terms of their metabolic capabilities and interactions with other microorganisms. This underscores the importance of studying such organisms in understanding ecosystem dynamics and microbial ecology." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis taihuensis Gram-negative rod aerobic non-spore-forming 260084 FMTS00000000.1 Bac0002386 Pseudonocardia ammonioxydans "Pseudonocardia ammonioxydans is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under aerobic conditions, with an optimal growth temperature of 25°C. This microbe is notable for its ability to withstand various environmental stresses, which is characteristic of its genus. As a member of the Actinobacteria phylum, Pseudonocardia ammonioxydans plays a role in soil ecosystems, where it may contribute to the degradation of organic materials and the cycling of nutrients.↵↵The spore-forming characteristic of Pseudonocardia ammonioxydans suggests an adaptive strategy to survive adverse conditions, allowing it to persist in environments where nutrients may be scarce or where competition from other microorganisms is intense. Its aerobic nature indicates a reliance on oxygen for metabolic processes, which may further influence its ecological niche, particularly in well-aerated soils.↵↵Understanding the traits of Pseudonocardia ammonioxydans not only enhances our knowledge of microbial diversity but also emphasizes its potential role in biogeochemical cycles. The filamentous nature of this organism may allow for complex interactions within microbial communities, possibly facilitating synergistic relationships with other soil-dwelling microbes. This unique ecological perspective highlights the importance of studying such microorganisms for their contributions to soil health and ecosystem functioning." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia ammonioxydans Gram-positive rod aerobic 25 mesophilic spore-forming 260086 FOUY00000000.1 Bac0002387 Microbulbifer agarilyticus str. GP101 "Microbulbifer agarilyticus strain GP101 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, thriving optimally at a temperature of 32.0 °C. This organism’s Gram-negative status indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. The rod shape of M. agarilyticus suggests a possible adaptation to various ecological niches, facilitating motility and nutrient acquisition.↵↵As a facultative aerobe/anaerobe, M. agarilyticus has the metabolic flexibility to utilize oxygen when available, but can also switch to anaerobic respiration in its absence. This trait may confer an advantage in fluctuating environmental conditions, allowing it to survive in diverse habitats where oxygen levels can vary. Such metabolic versatility may also indicate a role in biogeochemical cycles, particularly in the breakdown of organic materials under differing oxygen conditions.↵↵Overall, the characteristics of Microbulbifer agarilyticus str. GP101 suggest its potential involvement in the degradation of complex organic substrates, which could have implications for nutrient cycling and energy flow in its native ecosystem. Further studies may elucidate its specific contributions to these processes and its interactions with other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer agarilyticus Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic 260552 NZ_CP019650.1 Bac0002388 Bacillus halotolerans "Bacillus halotolerans is a Gram-positive, rod-shaped bacterium known for its ability to form spores, which contributes to its resilience in various environments. This microorganism optimally thrives at a temperature of 30.0°C and exhibits aerobic respiration, indicating its dependence on oxygen for growth and metabolism. The capacity for sporulation not only enables B. halotolerans to survive adverse conditions but also plays a crucial role in its ecological adaptability.↵↵The sporulating nature of B. halotolerans suggests that it may be well-suited for environments that experience fluctuations in nutrient availability and other stressors, potentially including saline conditions due to its designation as a halotolerant species. This trait allows the bacterium to withstand high salinity while maintaining metabolic functions under optimal conditions. Consequently, B. halotolerans may be of particular interest in studies related to microbial survival and adaptation in salt-affected habitats, such as saline soils or salted food products. Understanding its physiological traits further contributes to our knowledge of microbial diversity and resilience in fluctuating environmental conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus halotolerans Gram-positive rod aerobic 30 mesophilic spore-forming 260554 PVXB00000000.1 Bac0002389 Salmonella enterica subsp. enterica serovar Goldcoast "Salmonella enterica subsp. enterica serovar Goldcoast is a Gram-negative microbe characterized by its spirilla shape and the tendency to form chains or exist as singles. This serovar thrives optimally at 37.0°C, which coincides with the body temperature of many warm-blooded hosts, suggesting a close association with these environments. As a chemoorganotroph, S. enterica Goldcoast derives its energy from organic compounds, indicating its role in the microbiota of host organisms where organic substrates are readily available. ↵↵This serovar is microaerophilic, meaning that it requires reduced levels of oxygen for growth, which aligns with the oxygen conditions typically found in certain host-associated environments. The microbe’s habitat preference underscores its ecological niche, as it likely inhabits the gastrointestinal tracts of various hosts, where it may play a role in the fermentation of nutrients and interactions with the host microbiome.↵↵Understanding the characteristics of S. enterica Goldcoast enhances our knowledge of microbial diversity within host-associated environments and emphasizes the importance of adapting to specific oxygen levels, which may influence its metabolic activities and ecological interactions. This adaptation may also reflect evolutionary pressures that have shaped the serovar's behavior and functions within its ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 260678 NZ_CP039170.1 Bac0002390 Olavius algarvensis spirochete endosymbiont Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Olavius algarvensis spirochete endosymbiont 260710 UWYT00000000.1 Bac0002391 Wolbachia endosymbiont of Drosophila teissieri Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Drosophila teissieri 260916 VCEG00000000.1 Bac0002392 Rhodococcus sp. RD6.2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. RD6.2 260936 CVQP00000000.1 Bac0002393 Psychrobacter alimentarius str. PAMC 27889 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter alimentarius 261164 NZ_CP014946.1 Bac0002394 Ferroplasma sp. Type II Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Ferroplasma Ferroplasma sp. Type II 261388 ATDU00000000.1 Bac0002395 Thermoplasmatales archaeon Gpl Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon Gpl 261391 ATDV00000000.1 Bac0002396 Bacillus anthracis str. 'Ames Ancestor' str. Ames 0581 "Bacillus anthracis str. 'Ames Ancestor' str. Ames 0581 is a Gram-positive, rod-shaped bacterium that is capable of sporulation and thrives in terrestrial habitats. This organism exhibits facultative anaerobic respiration, allowing it to grow in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 37.0°C, aligning with the physiological conditions found in many vertebrate hosts.↵↵As a chemoheterotroph, B. anthracis str. Ames 0581 derives its energy from organic compounds, which it utilizes for growth and metabolic processes. The sporulating ability of this strain is particularly significant, as it allows the bacterium to survive adverse environmental conditions by forming resistant spores. This trait is a key factor in its lifecycle and contributes to its persistence in various habitats. ↵↵Understanding the ecological role of B. anthracis str. Ames 0581 can provide insight into its interactions within terrestrial ecosystems. The ability to sporulate enables this bacterium to endure fluctuations in nutrient availability and environmental stressors, potentially influencing microbial community dynamics and nutrient cycling within its habitat. Further research into its ecological interactions may elucidate the broader implications of its survival strategies in terrestrial environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod Yes 1 1 Facultative 37 Chemoheterotroph Mesophilic Terrestrial Free living Sporulating 261594 NC_007322.2 Bac0002397 Marinobacter flavimaris str. KCTC 12185 "Marinobacter flavimaris str. KCTC 12185 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This organism is part of the Marinobacter genus, which is known for its diverse metabolic capabilities, particularly in marine environments.↵↵The Gram-negative nature of M. flavimaris suggests that it possesses a characteristic outer membrane, which may contribute to its environmental adaptability and could influence its interactions with other microorganisms in its habitat. The rod shape of this bacterium is typical for many members of the Marinobacter genus, facilitating motility and colonization in various substrates, particularly in aquatic environments.↵↵Given its anaerobic requirement, M. flavimaris str. KCTC 12185 likely plays a role in the degradation of organic matter in oxygen-limited environments, such as sediments or deep-sea habitats. This trait may contribute to biogeochemical cycles by facilitating the breakdown of complex organic compounds, thereby influencing nutrient availability in its ecosystem. The strain's optimal growth temperature of 37.0°C suggests it could be well-suited for environments that experience warm conditions, possibly including shallow marine ecosystems or coastal regions where temperature fluctuations are minimal. Further studies on M. flavimaris str. KCTC 12185 could elucidate its specific functions and interactions within microbial communities in these anaerobic niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter flavimaris Gram-negative rod motile anaerobic 37 mesophilic non-spore-forming 262076 QRDH00000000.1 Bac0002398 Janibacter melonis str. CD11-4 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter melonis 262209 LQZG00000000.1 Bac0002399 Janibacter melonis str. M714 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter melonis 262209 NZ_CP044548.2 Bac0002400 Mycobacterium avium subsp. paratuberculosis K-10 str. k10 "Mycobacterium avium subsp. paratuberculosis K-10 str. k10 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This strain is an aerobic chemoorganotroph, meaning it requires oxygen for growth and derives energy from organic compounds. The optimal growth temperature for M. avium subsp. paratuberculosis K-10 is approximately 37.0°C, which aligns with the physiological temperature of its potential hosts.↵↵M. avium subsp. paratuberculosis is known to inhabit various environments, indicating its adaptability to diverse habitats. This ecological versatility may contribute to its persistence in various ecosystems, potentially influencing its interactions with other microorganisms and hosts. The ability to thrive in multiple habitats suggests a significant ecological role, particularly in environments where organic matter is available. ↵↵In conclusion, the unique combination of its aerobic metabolism and growth at mammalian body temperature may facilitate its survival and proliferation in environments closely associated with its host organisms, highlighting the potential for complex interactions within microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic Multiple Free living Singles 262316 NC_002944.2 Bac0002401 Flavobacterium frigidimaris Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium frigidimaris aerobic 262320 FQWG00000000.1 Bac0002402 Exiguobacterium sibiricum 255-15 "Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) was isolated from a depth of 43.6 m from a geological layer in the permafrost core of Kolyma Lowland (northeast of Siberia) estimated to be 2-3million years old. Exiguobacterium sibiricum is a psychrophilic non-spore forming Gram-positive bacterium. The cells are rod-shaped, motile with peritrichous flagella and their growth ranges are from -2.5 to 40 degrees Celsius. The cells can vary in shape and size depending on growth temperature. They occur singly, in pairs or infrequently in chains. Colonies appear orange-yellow (on TSA media). They are facultative anaerobes but grow more profusely aerobically. The nearest phylogenetic neighbors to isolate 255-15 were other Kolyma-Indigirka lowland permafrost isolates and grouped closely with the type strain (ATCC 953), isolated from skimmed milk and an Antarctic isolate of Exiguobacterium acetylicum. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of harsh conditions. The issue of long-term survival is of interest in the field of astrobiology. Organisms that survive such hostile environments may be used as models for understanding cellular responses on astral bodies. (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Family_XII Exiguobacterium Exiguobacterium artemiae 255-15 Positive Rod No 1 1 Facultative aerobe Psychrophilic Specialized Free living Chains - Singles - Pairs Nonsporulating No 262543 NC_010556.1 Bac0002403 Brucella abortus bv. 1 str. 9-941 "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucellosis is a major infectious disease for both human and animals. Several Brucella species (B.abortus, B.melitensis and B.suis) have been isolated from many different animals. All three Brucella species cause a severe human disease characterized in its acute phase by undulant fever and in its chronic phase by damage of different organs. Brucellosis is a major problem in the Mediterranean region and parts of Asia, Africa and Latin America. When the infection is localized to the brain or the heart, it can result in a fatal meningitidis or fatal endocarditis, respectively. Brucella abortus (strain 2308) is virulent for humans, cattle and certain other domestic animals. Its genome consists of 2 chromosomes. Despite the high conservation of the genomic backbone shared by the three Brucella species, several important species-specific differences exist. A total of 207 pseudogenes were identified in B.abortus (strain 2308). Sixteen pseudogenes are common to the three species, among which 9 were generated by the same event. Although Brucellae contain a large set of flagellar genes, they display a species-specific gene inactivation and consequently are nonmotile. The inactive genes contain either single point mutations or small deletions and are essential for the activity or the assembly of the flagellum or are key structural proteins of this organelle. The three Brucella species harbor a complete and functional type IV secretion system. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella abortus 9-941 Negative Rod No 1 2 Facultative aerobe 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 262698 NC_006932.1 Bac0002404 Micromonospora mirobrigensis "Micromonospora mirobrigensis is a Gram-positive, aerobic bacterium known for its ability to form spores, which contributes to its resilience in various environments. This actinobacterium thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate thermal conditions that may be reflective of its natural habitat. The spore-forming capability of M. mirobrigensis is significant, as it enables the organism to withstand adverse environmental conditions, including desiccation and nutrient limitation.↵↵As a member of the Micromonospora genus, M. mirobrigensis is likely to be involved in the decomposition of organic matter, contributing to nutrient cycling in its ecosystem. The aerobic nature of this microbe indicates a reliance on oxygen for its metabolic processes, which aligns with its potential role in the degradation of complex organic compounds in oxygen-rich environments.↵↵The unique combination of its Gram-positive structure and spore-forming ability positions M. mirobrigensis as a noteworthy player in microbial communities, particularly in soils or decaying organic materials where it may interact with other microorganisms. This interaction may facilitate the breakdown of organic substrates, thus influencing soil health and fertility. Understanding the ecological role of M. mirobrigensis could provide insights into its contributions to biogeochemical cycles, particularly in environments where aerobic decomposition is essential." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora mirobrigensis Gram-positive aerobic 29 mesophilic spore-forming 262898 FMCX00000000.1 Bac0002405 Micromonospora maris AB-18-032 str. AB18-032 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora maris 263358 NC_015409.1 Bac0002406 Idiomarina fontislapidosi str. F23 "Idiomarina fontislapidosi strain F23 is a Gram-negative, rod-shaped bacterium that exhibits non-spore-forming characteristics and thrives optimally at a temperature of 32.0°C. This organism's Gram-negative nature indicates a complex cell wall structure, which typically includes an outer membrane composed of lipopolysaccharides. The rod shape is a common morphological trait among many bacteria, often associated with diverse metabolic activities. ↵↵As a non-spore-forming bacterium, Idiomarina fontislapidosi str. F23 relies on other mechanisms for survival in fluctuating environmental conditions, which may include metabolic adaptability or biofilm formation. The optimal growth temperature of 32.0°C suggests that this strain may inhabit environments that are moderately warm, potentially influencing its ecological niche and interactions with other microorganisms.↵↵Overall, the characteristics of Idiomarina fontislapidosi str. F23 suggest that it may play a specific role in its ecological community, possibly related to nutrient cycling or interactions with other microbial populations in its habitat. Further studies could illuminate its functional roles and contributions to the microbial dynamics in its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina fontislapidosi Gram-negative rod 32 mesophilic non-spore-forming 263723 PIPV00000000.1 Bac0002407 Idiomarina ramblicola str. R22 "Idiomarina ramblicola strain R22 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0°C. This species is characterized by its non-spore-forming nature, which indicates a reliance on favorable environmental conditions for survival and reproduction rather than the ability to withstand extreme stress through sporulation. ↵↵The Gram-negative cell wall structure of Idiomarina ramblicola str. R22 suggests a complex outer membrane that may confer a variety of adaptive advantages, such as resistance to certain antibiotics and the capacity for selective transport of nutrients. Its rod shape is a common morphological trait among many bacteria, facilitating motility and nutrient uptake in diverse aquatic environments.↵↵The specific growth temperature of 32.0°C aligns with the organism's potential habitat in moderately warm aquatic systems, which may influence its metabolic pathways and ecological interactions. The aerobic requirement indicates that this bacterium utilizes oxygen for its metabolic processes, potentially impacting the local biogeochemical cycles, particularly in marine environments where oxygen availability varies.↵↵Overall, Idiomarina ramblicola str. R22 exemplifies the adaptations of certain marine bacteria to specific thermal and oxygen conditions, highlighting the intricate relationships between microbial life and their environmental niches in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina ramblicola Gram-negative rod aerobic 32 mesophilic non-spore-forming 263724 PIQC00000000.1 Bac0002408 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 "Zymomonas mobilis subsp. mobilis ZM4, also designated as ATCC 31821, is a facultatively anaerobic, Gram-negative bacterium characterized by its rod-shaped morphology and tendency to arrange in pairs. This microbe is of significant interest due to its unique metabolic capabilities, particularly in the fermentation of sugars, which makes it a potential candidate for bioethanol production.↵↵The facultative anaerobic nature of Z. mobilis ZM4 allows it to thrive in both aerobic and anaerobic environments, providing flexibility in various industrial fermentation processes. Its ability to ferment glucose, fructose, and sucrose efficiently contributes to its viability as a microbial agent in biofuel applications. The rod-shaped structure is typical among many bacteria and facilitates motility and colonization in diverse environments.↵↵In addition to its industrial relevance, the pairing of cells may influence its interactions within microbial communities, potentially impacting nutrient cycling and energy flow in ecosystems where it is present. Understanding the ecological roles of Z. mobilis ZM4 could provide insights into its applications in sustainable practices, particularly in promoting renewable energy sources through efficient fermentation processes. The study of this organism may help further elucidate the complex dynamics of microbial communities in natural and engineered environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Zymomonadaceae Zymomonas Zymomonas mobilis Negative Rod Yes 1 2 Facultative Mesophilic Free living Pairs 264203 NC_006526.2 Bac0002409 Cellulosimicrobium funkei str. U11 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium funkei agricultural soil 264251 JNBQ00000000.1 Bac0002410 Pseudomonas syringae pv. castaneae "Pseudomonas syringae pv. castaneae is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This phytopathogenic microbe is known for its heterotrophic metabolism, relying on organic compounds for energy. It thrives in various habitats, demonstrating a versatile ecological adaptability. As an aerobic organism, Pseudomonas syringae pv. castaneae requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen levels fluctuate.↵↵The presence of this bacterium in multiple habitats suggests its potential role in diverse ecological niches, possibly including soil, plant surfaces, and decaying organic matter. Its adaptability highlights its importance in microbial communities and potential interactions within these environments. Understanding the ecological roles of Pseudomonas syringae pv. castaneae can provide insights into its contributions to nutrient cycling and plant health, as well as its interactions with other microorganisms in the ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264450 LJQD00000000.1 Bac0002411 Pseudomonas syringae pv. cerasicola "Pseudomonas syringae pv. cerasicola is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is categorized as a heterotrophic aerobe. This microbe thrives in diverse habitats, reflecting its adaptability to various environmental conditions. As an aerobic organism, P. syringae pv. cerasicola requires oxygen for its metabolic processes, which positions it among other aerobic bacteria that play vital roles in nutrient cycling within ecosystems.↵↵The heterotrophic nature of this bacterium indicates its reliance on organic compounds for energy and growth, suggesting its involvement in the decomposition of organic matter. This trait underscores the potential ecological significance of P. syringae pv. cerasicola in soil and plant environments, where it may contribute to the breakdown of organic substrates and influence nutrient availability.↵↵Furthermore, its rod shape and characteristic arrangement in singles may facilitate motility and colonization in various ecological niches, allowing it to exploit different resources effectively. The versatility of P. syringae pv. cerasicola highlights its potential roles in both biotechnological applications and natural ecosystems, particularly in the context of its interactions with other microorganisms and its contributions to biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264451 LJQA00000000.1 Bac0002412 Pseudomonas amygdali pv. ciccaronei Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 264452 LJPY00000000.1 Bac0002413 Pseudomonas syringae pv. coriandricola Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 264453 RBOV00000000.1 Bac0002414 Pseudomonas syringae pv. rhaphiolepidis "Pseudomonas syringae pv. rhaphiolepidis is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, which allows it to thrive in a variety of habitats. This bacterium is classified as an aerobe, indicating its requirement for oxygen to support its metabolic processes.↵↵The versatility in its energy sourcing and adaptability to multiple environments suggest that Pseudomonas syringae pv. rhaphiolepidis may play significant roles in various ecological contexts, potentially influencing nutrient cycling and interactions within microbial communities. Its ability to survive in diverse habitats further underscores the ecological resilience characteristic of the Pseudomonas genus, which is known for its metabolic diversity. This adaptability may also facilitate its survival in fluctuating environmental conditions, contributing to its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264457 LJRE00000000.1 Bac0002415 Pseudomonas syringae pv. solidagae "Pseudomonas syringae pv. solidagae is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is heterotrophic, deriving its energy from organic compounds, which enables it to thrive in a variety of habitats, including those where organic matter is present. As an aerobic organism, P. syringae pv. solidagae requires oxygen for its metabolic processes, positioning it within ecosystems that provide adequate levels of this gas. ↵↵The versatility of P. syringae pv. solidagae's habitat suggests a potential role in the decomposition of organic materials, contributing to nutrient cycling in its environments. This ecological adaptability may also facilitate interactions with other microorganisms and plants, influencing community dynamics and overall ecosystem health. Understanding its metabolic capabilities and ecological functions could provide insights into its role in various biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264458 LJRH00000000.1 Bac0002416 Pseudomonas syringae pv. spinaceae "Pseudomonas syringae pv. spinaceae is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as a heterotrophic aerobe. This microbe is known to inhabit a variety of environments, reflecting its versatile ecological adaptability. Its aerobic nature indicates that it thrives in oxygen-rich conditions, which is consistent with the metabolic requirements of many heterotrophic organisms that utilize organic compounds as energy sources.↵↵The broad habitat range of Pseudomonas syringae pv. spinaceae allows it to exploit various substrates, potentially contributing to its role in nutrient cycling within diverse ecosystems. The organism's ability to survive in multiple habitats underscores its ecological significance, as it may interact with other microbial communities and contribute to the overall dynamics of soil and plant health.↵↵This adaptability not only highlights the ecological versatility of Pseudomonas syringae pv. spinaceae but also suggests its potential role in biogeochemical processes. The presence of this bacterium in different environments may influence organic matter decomposition and nutrient availability, thereby impacting plant growth and ecosystem functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264459 LJRI00000000.1 Bac0002417 Peribacillus muralis str. G25-68 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus muralis 264697 NZ_CP017081.1 Bac0002418 Pseudomonas savastanoi pv. phaseolicola 1448A "Pseudomonas savastanoi pv. phaseolicola 1448A is a Gram-negative, rod-shaped bacterium that typically appears as single cells. This microbe is classified as a heterotroph, indicating that it relies on organic compounds as its energy source. P. savastanoi pv. phaseolicola 1448A is an aerobic organism, requiring oxygen for growth and metabolism.↵↵The habitat of P. savastanoi pv. phaseolicola 1448A is diverse, suggesting its adaptability to various environmental conditions. This adaptability might play a crucial role in its interactions with plant hosts and soil ecosystems. Its ability to thrive in multiple habitats could also indicate a potential for interaction with other microbial communities, highlighting the complexity of microbial ecosystems in which it resides.↵↵Understanding the traits of Pseudomonas savastanoi pv. phaseolicola 1448A offers insight into its ecological role, particularly in relation to its heterotrophic lifestyle and aerobic requirements. These characteristics may influence its ecological niche, particularly in environments where organic matter is available, thereby contributing to nutrient cycling and microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264730 NC_007274.1 Bac0002419 Photobacterium frigidiphilum "Photobacterium frigidiphilum is a Gram-negative, rod-shaped bacterium that thrives optimally at temperatures around 16.0°C. This microbe exhibits a facultative aerobic or anaerobic lifestyle, allowing it to adapt to varying oxygen conditions in its environment. ↵↵The Gram-negative nature of P. frigidiphilum suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. Its rod shape may confer advantages in motility and nutrient uptake, potentially facilitating its survival in diverse habitats. ↵↵The optimal growth temperature of 16.0°C indicates that P. frigidiphilum is well-suited for cold environments, which may include marine or polar ecosystems where temperatures are consistently low. Its facultative metabolic capabilities imply that it can utilize both aerobic and anaerobic respiration, enabling it to thrive in environments where oxygen availability fluctuates.↵↵This adaptability not only underscores its potential role in nutrient cycling within its ecological niche but also suggests that P. frigidiphilum may play a significant part in the microbial communities of cold aquatic environments, contributing to the overall microbial diversity and functioning in these unique ecosystems. Understanding the traits of P. frigidiphilum may provide insights into the resilience and ecological roles of microorganisms in cold habitats, particularly in the context of climate change and its impact on marine biodiversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium frigidiphilum Gram-negative rod facultative aerobe/anaerobe 16 psychrotolerant 264736 PYMJ00000000.1 Bac0002420 Methylobacillus flagellatus KT "Methylobacillus flagellatus strain KT. This organism contains multiple formaldehyde degradation pathways including a ribulose monophosphate (RMP) cycle and a linear pathway utilizing tetrahydromethanopterin-dependent enzymes. Degradation of formaldehydge is part of the process of incorporating carbon into the cell, and as this organism is an obligate methylotroph and can only utilize methanol and methylamine as the sole carbon and energy sources, conversion of intermediates is both an important part of the growth of cell and an exploitable process for industrial purposes. This strain was isolated from activated sludge found at the wastewater treatment plant in Moscow, Russia and is the fastest growing methylotroph discovered. The fast growth and conversion rate make it useful in industrial production of biomolecules. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylobacillus Methylobacillus flagellatus KT Negative Rod Yes 1 2 Aerobe 30 Mesophilic Specialized Free living Singles No 265072 NC_007947.1 Bac0002421 Burkholderia ubonensis subsp. mesacidophila Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 265293 MTZU00000000.1 Bac0002422 Anoxybacillus ayderensis Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus ayderensis 265546 NQLB00000000.1 Bac0002423 Vibrio ponticus str. JCM 19238 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ponticus 265668 BBMI00000000.1 Bac0002424 Komagataeibacter saccharivorans str. CV1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter saccharivorans 265959 NZ_CP023041.1 Bac0002425 Komagataeibacter nataicola Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter nataicola 265960 NZ_CP019881.1 Bac0002426 Rubrobacter xylanophilus DSM 9941 "The first strain of the genus Rubrobacter was isolated from gamma-irradiated hot spring water samples. This organism was found to be extremely gamma-radiation resistant, with a higher shoulder dose than the canonical radiation resistant species of the genus Deinococcus. The organism stained Gram-positive and was slightly thermophilic with an optimum growth temperature of about 45 degrees C. Several years later a single strain isolated from a hot runoff of a carpet factory in the United Kingdom was identified as a new species of the genus Rubrobacter and was named R. xylanophilus. This organism, however, had an optimum growth temperature of about 60 degrees C, and was a true thermophile. At that time only one strain of each species was known but, soon afterwards a large number of isolates of R. radiotolerans and R. xylanophilus were recovered, after gamma-irradiation of the samples from hot spring water in Sao Pedro do Sul in Central Portugal. The two species of the genus Rubrobacter represent the oldest lineage (deepest branch) of the Actinobacteria (High G+C Gram-positive bacteria) and are distantly related to several bacteria of medical importance, namely the species of Mycobacterium and the important antibiotic producers of the order Streptomycetales. Some strains of R. xylanophilus are capable of degrading hemicellulose and xylan, and could play a significant role in the environmental degradation of this material. Even though the species of Rubrobacter have only been isolated from thermal environments, it is unlikely that they are restricted to these environments. It is now known that the DNA of species of Rubrobacter (along with species of Deinococcus) is frequently cloned from desert soils where these organisms may be very abundant. These organisms could, therefore, survive for long periods of time in desert soils, and grow during sporadic rainy periods. Very little research has been done on these organisms and little is known other than their taxonomic characterization. (EBI Integr8)" Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus DSM 9941 Positive Rod No 1 Aerobe 60 Heterotroph Thermophilic Specialized Free living Singles - Pairs Nonsporulating No 266117 NC_008148.1 Bac0002427 Stenotrophomonas koreensis str. DSM 17805 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas koreensis aerobic 266128 LDJH00000000.1 Bac0002428 Cupriavidus metallidurans CH34 "Cupriavidus metallidurans CH34. This strain was first identified in the heavy metal-contaminated sludge of a settling tank in Belgium in the late 1970s. Metal resistance functions are predominantly encoded on two plasmids, pMOL28 and pMOL30, which produce metal exporters that pump metal ions out of the cell, thus protecting intracellular macromolecules from the toxic effects of high concentrations of metal. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans CH34 Negative Rod Yes Facultative 30 Mesophilic Specialized Free living Singles Nonsporulating 266264 NC_007971.2 Bac0002429 Paraburkholderia xenovorans LB400 "Paraburkholderia xenovorans LB400 is a Gram-negative, non-spore-forming rod-shaped bacterium that typically exists as single cells. This species thrives in various habitats, demonstrating its versatility and adaptability to different environmental conditions. It is an aerobic organism, requiring oxygen for its metabolic processes, which suggests a potential role in biogeochemical cycles where oxygen is present.↵↵The optimal growth temperature for P. xenovorans LB400 is approximately 30.0°C, indicating a preference for moderate temperatures that may align with its natural environments, such as soil or contaminated sites. The ability to grow in multiple habitats underscores its ecological significance and potential applications in bioremediation, where it may contribute to the degradation of environmental pollutants.↵↵Overall, the physiological characteristics of P. xenovorans LB400 highlight its potential utility in environmental microbiology, particularly in processes that require aerobic biodegradation. Its capability to thrive in diverse settings suggests it may play a role in the microbial community dynamics of various ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia xenovorans Negative Rod No 1 2 Aerobe 30 Mesophilic Multiple Free living Singles non-spore-forming 266265 NC_007953.1 Bac0002430 Kaistella antarctica Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella antarctica 266748 NZ_LR134441.1 Bac0002431 Kaistella jeonii str. DSM 17048 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella jeonii 266749 JSYL00000000.1 Bac0002432 Porphyromonas gingivicanis str. COT-022 OH1391 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivicanis subgingival plaque 266762 JQZW00000000.1 Bac0002433 Thalassobacter stenotrophicus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Thalassobacter Thalassobacter stenotrophicus 266809 CYRX00000000.1 Bac0002434 Sinorhizobium meliloti 1021 "Rhizobium, Bradyrhizobium, Mesorhizobium, Sinorhizobium, and Azorhizobium - known as rhizobia - are symbiotic nitrogen fixers that can be found in the roots of plants and especially in legume plants. They are responsible for the worlds largest portion of fixed atmospheric nitrogen. (Nitrogen-fixation by organisms provides about 65% of the the biosphere's available nitrogen (Lodwig et al. 2003).) Bradyrhizobium japonicum has been used since 1957 in molecular genetics, physiology, and ecology due to its exellent ability in symbiotic nitrogen fixation.The genome of Rhizobium sp. NGR234 has a genome structure much like Agrobacterium tumefaciens, which comes in three parts. However, while Agrobacterium tumefaciens has a circular chromosome, a linear chromosome, and a megaplasmid, Rhizobium sp. NGR234 has a chromosome 3.5 Mb in length, a megaplasmid of more than 2 Mb (pNGR234b), and a smaller plasmid 536,165 bp in length (pNGR234a) that carries most of the genes used for symbioses with legumes. The average G-C content of the entire genome is about 61.2 mol %. Most of the assumed coding sequences in the Rhizobium sp. NGR234 genome can be ""distributed into functional classes similar to those in Bacillus subtilis, [however,] functions related to transposable elements are more abundant in NGR234"" (Viprey et al. 2000).The genome of Bradyrhizobium japonicum is a single chromosome 9,105,828 bp in length. The average G-C content of the genome is 64.1 mol %. Fifty-two percent of the 8317 potential protein-coding genes are like genes of known function, 30% of the genes are hypothetical, and 18% have no similarity to any reported genes. In addition, 34% of the genes were like genes in Mesorhizobium loti and Sinorhizobium meliloti, and 23% of the genes were unique to Bradyrhizobium japonicum (Kaneko et al.).The genome of Sinorhizobium meliloti is similar to Rhizobium sp. NGR234; it has a 3.65 Mb chromosome, a 1.35 Mb megaplasmid (pSymA), and a 1.68 Mb megaplasmid (pSymB). All three genomic elements contribute in some way to plant symbiosis (Galibert et al. 2001).Mesorhizobium and Azorhizobium have not been genetically sequenced but are known to carry out similar processes to other rhizobia.Rhizobium, Bradyrhizobium, Mesorhizobium, Sinorhizobium, and Azorhizobium - collectively known as rhizobia - are Gram-negative, nitrogen-fixing bacteria that form nodules on host plants. They also have symbiotic relationships with legume plants, which can't live without these bacteria's essential nitrogen-fixing processes. In nodules, the rhizobia bacteriods use carbon and energy from the plant in the form of dicarboxylic acids. Recent studies have suggested that the bacteroids do more than just provide the plant with ammonium (through nitrogen fixation). It was shown that a more complex amino-acid cycle is needed for Rhizobium to successfully fix nitrogen in pea nodules. Rhizobium can use the amino acids from the plant to shut down their ammonium assimilation; however, the bacteria must provide the plant with ammonium in order to obtain the amino acids. This alone would mean that the plant could regulate the amount of dicarboxylate that the bacteroids use by amino acid supply and dominate the relationship. This is not the case, however, because the bacteroids ""act like plant organelles to cycle amino acids back to the plant for asparagine synthesis,"" making the plant dependent on them (Lodwig et al. 2003). This system creates mutualism between the bacteria and the plant.However, nitrogen fixation is an energy expensive process that requires up to 22% of the plants net photosynthate. In addition, at least 25% of the electron flux through the nitrogenase goes towards reducing protons into hydrogen gas. This process of nitrogenase-dependent hydrogen production is a major factor in the efficiency of symbiotic nitrogen fixation. To have more efficient energy use, some Rhizobium and many Bradyrhizobium strains recycle the hydrogen produced by nitrogenase in nodule bacteroids that have a hydrogen uptake system (Hup). However, Sinorhizobium meliloti, M. ciceri, and R. leguminosarum by. viciae UML2 strains have poor expression of the hup system (Palacios et al. 2000).Rhizobia can be found in the roots, or rhizosphere, of other types of plants where they cause the formation of nodules. For example, Bradyrhizobium japonicum was first isolated from a soybean nodule in Florida in 1957. Rhizobium sp. NGR234 has a host range of more than 112 genera of legumes (Viprey et al. 2000). These symbiotic relationships occur when rhizobia penetrate their hosts with centripetally-developing infection threads. The bacterium induces the a meristem at the cortex of the plant roots where nodules then develop. Meanwhile, the infection threads make their way into the nodule cells and release rhizobia into the cytoplasm of infected cells. The rhizobia, which act as symbiosomes, enlarge and differentiate into nitrogen-fixing bacteroids, which have low free-oxygen levels. The symbiotic development comes from an exchange of chemical signals between the plant and the bacteria. One of the first signals in this continuous exchange are called flavonoids and are released by the legume roots. They actually activate the expression of nodulation genes (nod, noe, and nol) by interacting with rhizobial regulators of the NodD family. Most of these nodulations genes then help synthesis and secrete a family of lipochito-oligosaccharide molecules that help the bacteria get into the root hairs (Viprey et al. 2000). (From http://microbewiki.kenyon.edu/index.php/Sinorhizobium) (MicrobeWiki: Sinorhizobium)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti 1021 Negative Rod Yes Aerobe 25 Mesophilic Multiple 266834 NC_003047.1 Bac0002435 Mesorhizobium japonicum MAFF 303099 str. MAFF303099 "Mesorhizobium japonicum MAFF 303099 str. MAFF303099 is a Gram-negative, rod-shaped bacterium recognized for its ability to thrive in various habitats as an aerobic organism. This strain of M. japonicum is part of the larger group of rhizobia, which are well-known for their symbiotic relationships with leguminous plants, particularly in nitrogen-fixing nodules. The Gram-negative classification indicates that this bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of many environmental and symbiotic bacteria.↵↵M. japonicum MAFF 303099 is adapted to aerobic conditions, indicating its reliance on oxygen for growth and metabolic processes. This trait is essential for its survival in different environments, as it allows for aerobic respiration, which is typically more energy-efficient compared to anaerobic processes. The flexibility to inhabit multiple habitats underscores the ecological versatility of this strain, suggesting its potential role in various soil ecosystems where it may contribute to nutrient cycling and soil health.↵↵The ecological significance of M. japonicum MAFF 303099 extends beyond its symbiotic relationships; it may also play a role in enhancing soil fertility through nitrogen fixation, thereby supporting plant growth in diverse agricultural settings. Understanding the traits and capabilities of this bacterium not only provides insights into its ecological functions but also highlights its potential applications in sustainable agriculture." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium japonicum Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 266835 NC_002682.1 Bac0002436 Salibacterium qingdaonense "Salibacterium qingdaonense is a Gram-positive, rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 37.0°C. This species is characterized by its non-spore-forming nature, which may influence its survival strategies in various environments. The Gram-positive cell wall structure of Salibacterium qingdaonense suggests a robust peptidoglycan layer, which is typical of this classification and may play a role in its environmental resilience and interaction with other microbial communities.↵↵The aerobic requirement indicates that Salibacterium qingdaonense depends on oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. Its optimal growth temperature of 37.0°C aligns with human body temperature, suggesting potential associations with warm-blooded hosts or environments that mimic such conditions.↵↵Given these traits, Salibacterium qingdaonense may occupy niches where aerobic conditions prevail, potentially participating in nutrient cycling or contributing to the microbiota of specific habitats. The absence of sporulation indicates that this bacterium may rely on other survival mechanisms, such as forming biofilms or utilizing specific adaptive strategies to withstand unfavorable conditions. Further studies could elucidate its ecological role and interactions within microbial communities, particularly in environments where aerobic processes are critical." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salibacterium Salibacterium qingdaonense Gram-positive rod non-motile aerobic 37 mesophilic non-spore-forming 266892 FOTY00000000.1 Bac0002437 Kineococcus radiotolerans SRS30216 = ATCC BAA-149 "Kineococcus radiotolerans SRS30216, also designated as ATCC BAA-149, is a Gram-positive coccus that typically exists in singles or clusters. This microbe is characterized by its aerobic metabolism and thrives optimally at a temperature of 32.0 °C. Kineococcus radiotolerans has been isolated from diverse habitats, suggesting a versatile adaptability to varying environmental conditions. ↵↵The unique morphological features of this organism, coupled with its oxygen requirement, indicate its potential roles in biogeochemical processes, particularly in environments where aerobic conditions prevail. The ability of Kineococcus radiotolerans to withstand radiation exposure further highlights its resilience, which may be of interest in studies related to microbial survival in extreme conditions. Understanding the ecological roles and metabolic capabilities of Kineococcus radiotolerans could provide insights into its potential applications in biotechnology and bioremediation, especially in contexts where the degradation of radioactive materials or other pollutants is necessary." Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Kineococcus Kineococcus radiotolerans Positive Cocci No 1 1 Aerobe 32 Mesophilic Multiple Free living Singles - Clusters 266940 NC_009664.2 Bac0002438 Chryseobacterium kwangjuense str. KJ1R5 "Chryseobacterium kwangjuense strain KJ1R5 is a Gram-negative, non-spore-forming rod that exhibits optimal growth at 32.0°C and is strictly aerobic in nature. This bacterium belongs to the genus Chryseobacterium, which is characterized by its distinct morphological and physiological traits. The rod shape of KJ1R5 suggests a potential adaptability to diverse environments, particularly those that favor aerobic metabolic processes.↵↵Given its aerobic requirement, C. kwangjuense KJ1R5 may play a role in the decomposition of organic matter in oxygen-rich environments, potentially contributing to nutrient cycling. The bacterium's growth at 32.0°C indicates that it may thrive in temperate conditions, which could influence its ecological interactions in various habitats. Further studies could elucidate the specific ecological niches occupied by this strain and its interactions with other microorganisms, as well as its potential applications in biotechnology or environmental microbiology. Understanding these aspects may help in harnessing the bacterium's capabilities for bioremediation or other beneficial uses." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium kwangjuense Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 267125 LPUR00000000.1 Bac0002439 Sphingopyxis granuli str. TFA Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis granuli aerobic 267128 NZ_CP012199.1 Bac0002440 Levilactobacillus zymae Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus zymae 267363 NZ_LT854705.1 Bac0002441 Marinobacterium halophilum str. DSM 17586 "Marinobacterium halophilum strain DSM 17586 is a Gram-negative, rod-shaped bacterium, characterized by its adaptation to high-salinity environments. This species is part of the Marinobacterium genus, which is known for its halophilic properties, allowing it to thrive in saline conditions that would be inhospitable to many other microorganisms. The Gram-negative classification indicates that the bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that is often associated with increased resistance to certain antibiotics and environmental stresses.↵↵The rod shape of Marinobacterium halophilum str. DSM 17586 is typical of many members of the Marinobacterium genus, which often exhibit a variety of morphologies, but rods are predominant. This morphology may facilitate motility and nutrient uptake in its saline habitat, enhancing its survival and competitive advantage.↵↵Research into Marinobacterium halophilum and related species has the potential to deepen our understanding of microbial life under extreme conditions, particularly in understanding metabolic pathways that enable survival in high-salt environments. This knowledge may also offer insights into biotechnological applications, such as bioremediation and the production of enzymes that function optimally in saline conditions, contributing to the exploration of microbial diversity in extreme ecological niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinobacterium Marinobacterium halophilum Gram-negative rod motile 267374 PYGI00000000.1 Bac0002442 Lactobacillus kefiranofaciens "Lactobacillus kefiranofaciens is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites including the gastrointestinal tract, oral cavity, and urogenital tract of humans and animals, and is a Facultative Anaerobe. The Gram-positive characteristic indicates that this microbe has a thick peptidoglycan layer in its cell wall, providing it with resistance to certain environmental stresses. Its rod-shaped morphology allows for efficient movement and colonization in its preferred environments. As a mesophilic microbe, Lactobacillus kefiranofaciens grows best in moderate temperatures, typically between 20-45°C, making it well-suited for survival in the human body and other temperate environments. As a Chemoheterotroph, Lactobacillus kefiranofaciens requires organic compounds for energy and growth, which it obtains by breaking down sugars and other nutrients. This metabolic characteristic enables the microbe to thrive in a variety of environments, including the human gut where it can feed on undigested carbohydrates. The microbe's ability to inhabit multiple body sites is a testament to its adaptability and ability to form symbiotic relationships with its hosts. As a Facultative Anaerobe, Lactobacillus kefiranofaciens can survive in both aerobic and anaerobic conditions, allowing it to colonize a wide range of environments, from the oxygen-rich oral cavity to the oxygen-poor gut. Lactobacillus kefiranofaciens is known to produce a unique polysaccharide called kefiran, which has been shown to have immunomodulatory and prebiotic properties, making it a subject of research for its potential applications in probiotics and functional foods. Its ability to produce this polysaccharide also allows it to interact with other microbes and the host immune system, playing a role in maintaining a healthy balance of the microbiome." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus kefiranofaciens Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 267818 NCWZ00000000.1 Bac0002443 Nitrincola lacisaponensis str. 4CA "Nitrincola lacisaponensis strain 4CA is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This species thrives optimally at a temperature of 37.0°C, which suggests a potential adaptation to moderately warm environments. As an aerobic organism, N. lacisaponensis str. 4CA relies on oxygen for its metabolic processes, which may influence its ecological niche, favoring habitats rich in oxygen.↵↵The absence of sporulation indicates that this bacterium may not possess the mechanisms to endure extreme environmental stresses that are typically associated with spore formation, suggesting a possible limitation in its survival in harsh conditions. The rod shape of N. lacisaponensis may confer advantages in motility and nutrient acquisition in its environment, although specific ecological roles have not been detailed in the provided traits.↵↵Overall, Nitrincola lacisaponensis str. 4CA's characteristics reflect a specialized adaptation to aerobic environments, potentially influencing its role in biogeochemical cycles, particularly in nitrogen metabolism, given its genus association. Further studies into its metabolic capabilities and ecological interactions could provide valuable insights into its function within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Nitrincola Nitrincola lacisaponensis Gram-negative rod aerobic 37 mesophilic non-spore-forming 267850 JMSZ00000000.1 Bac0002444 Shackletoniella antarctica Bacillati Cyanobacteriota Cyanophyceae Oculatellales Oculatellaceae Shackletoniella Shackletoniella antarctica 268115 QBMN00000000.1 Bac0002445 Methylobacterium brachiatum str. TX0642 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium brachiatum 269660 NZ_CP033233.1 Bac0002446 Sporolactobacillus nakayamae Bacillati Bacillota Bacilli Caryophanales Sporolactobacillaceae Sporolactobacillus Sporolactobacillus nakayamae microaerophile 269670 FOOY00000000.1 Bac0002447 Rhodospirillum rubrum ATCC 11170 "Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) is a Gram-negative, motile and spiral-shaped bacterium. It is able to grow under a broad range of conditions including aerobiosis and anaerobiosis. It can use fermentation or photosynthesis for producing energy when it grows anaerobically. It is able to grow on CO as sole source of energy. Its nitrogen fixation system consists of both a Mo-Fe and a Fe-only nitrogenases. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillum Rhodospirillum rubrum ATCC 11170 Negative Spirilla Yes 1 2 Facultative anaerobe 25 Photolithotroph - Photoautotroph Mesophilic Multiple Free living Nonsporulating No 269796 NC_007641.1 Bac0002448 Methylobacterium aquaticum str. DSM 16371 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium aquaticum 270351 LABX00000000.1 Bac0002449 Methylobacterium aquaticum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium aquaticum 270351 NZ_AP014706.1 Bac0002450 Salegentibacter mishustinae str. KCTC 12263 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter mishustinae 270918 LKTP00000000.1 Bac0002451 Flavobacterium weaverense str. DSM 19727 "Flavobacterium weaverense str. DSM 19727 is a Gram-negative, aerobic, rod-shaped bacterium characterized by its non-spore-forming nature and optimal growth temperature of 16.0 °C. The organism is part of the Flavobacteriaceae family and exhibits typical features associated with this group, including its morphological characteristics and metabolic requirements. ↵↵As a Gram-negative microbe, F. weaverense possesses an outer membrane that contains lipopolysaccharides, which can influence its interactions within various environments and its resilience to certain antimicrobial agents. The aerobic nature of this bacterium suggests a reliance on oxygen for its metabolic processes, potentially positioning it within specific ecological niches where oxygen availability is sufficient.↵↵The optimal growth temperature of 16.0 °C indicates that F. weaverense is likely adapted to cooler environments, which may include aquatic habitats or other cold-adapted ecosystems. This temperature preference can provide insights into its ecological role, particularly in biogeochemical cycles in cold-water environments.↵↵Overall, the traits of Flavobacterium weaverense str. DSM 19727 suggest it may play a significant role in the microbial community dynamics of cooler habitats, contributing to nutrient cycling and organic matter degradation in these ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium weaverense Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 271156 REFH00000000.1 Bac0002452 Stutzerimonas xanthomarina Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas xanthomarina 271420 RHQM00000000.1 Bac0002453 Stutzerimonas xanthomarina str. S11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas xanthomarina 271420 CCYE00000000.1 Bac0002454 Stutzerimonas xanthomarina str. UASWS0955 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas xanthomarina 271420 MDEM00000000.1 Bac0002455 Burkholderia thailandensis E264 "Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) was originally isolated from a rice field sample in Thailand. It is a soil saprophyte that is not pathogenic to mammals. However it shares many potential virulence genes with B.mallei and B.pseudomallei, which suggests that it descended from a pathogenic ancestor and that it may also be a modern pathogen with an identified non-mammalian host. B.thailandensis can kill or paralyze nematodes when they are immersed in the B.thailandensis cultures (adapted from PMID 16336651). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis E264 Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial Free living No 271848 NC_007651.1 Bac0002456 [Ochrobactrum] quorumnocens str. A44 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum quorumnocens 271865 NZ_CP022603.1 Bac0002457 Lactiplantibacillus argentoratensis str. DSM 16365 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus argentoratensis 271881 NZ_CP032755.1 Bac0002458 Anabaena cylindrica PCC 7122 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena cylindrica 272123 NC_020056.1 Bac0002459 Kamptonema sp. PCC 6506 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Kamptonema Kamptonema sp. PCC 6506 272129 CACA00000000.1 Bac0002460 Arthrobacter stackebrandtii str. CCM 2783 "Arthrobacter stackebrandtii str. CCM 2783 is a Gram-positive, aerobic bacterium characterized by its rod shape and inability to form spores. As a member of the genus Arthrobacter, this strain exhibits typical traits associated with aerobic metabolism, allowing it to thrive in oxygen-rich environments. The non-spore-forming nature of A. stackebrandtii suggests a reliance on environmental conditions for survival, rather than dormant phases often seen in spore-forming bacteria.↵↵The rod shape of A. stackebrandtii may influence its motility and ability to colonize various substrates, potentially enhancing its adaptability in diverse ecological niches. While specific ecological roles of this strain remain to be fully elucidated, members of the genus Arthrobacter are known to play significant roles in soil ecosystems, contributing to the degradation of organic compounds and the cycling of nutrients. This indicates that A. stackebrandtii could be involved in processes such as bioremediation or soil health maintenance, supporting the sustainability of microbial communities. Further research into this strain could reveal its potential applications in biotechnology and environmental management." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter stackebrandtii Gram-positive rod non-motile aerobic non-spore-forming 272161 QJVE00000000.1 Bac0002461 Bacteroides fragilis NCTC 9343 str. ATCC 25285 "Bacteroides fragilis NCTC 9343 str. ATCC 25285 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives optimally at 37.0°C. As a chemoorganotroph, this microbe utilizes organic compounds as its primary energy source, demonstrating its role in the catabolic processes within host-associated environments. Its anaerobic nature indicates that it does not require oxygen for growth, which is characteristic of many members of the Bacteroides genus, allowing them to inhabit oxygen-depleted niches within the gastrointestinal tract of various hosts.↵↵The habitat of Bacteroides fragilis NCTC 9343 str. ATCC 25285 is closely linked to its ecological role in the microbiome, where it contributes to the fermentation of complex polysaccharides and the production of short-chain fatty acids, which are essential for host metabolic functions. This strain exemplifies the intricate relationship between gut microbiota and host health, highlighting the importance of anaerobic bacteria in maintaining a balanced microbial community. The metabolic activities of Bacteroides fragilis are crucial not only for nutrient absorption but also for modulating the immune response, thereby underscoring its significance in the ecosystem of the gastrointestinal tract." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 272559 CR626927.1 Bac0002462 Burkholderia pseudomallei K96243 "Burkholderia pseudomallei strain K96243. This strain was a clinical isolate from Thailand. The genome of this organism carries many genomic islands as compared to the related organism B. mallei, suggesting extensive horizontal transfer. Three different type III secretion systems (TTSS) are encoded on the chromosomes of this organism, two of which are similar to plant pathogenic TTSSs, while the third is similar to the Salmonella pathogenicity island, all of which may contribute to pathogenicity. Other virulence determinants include multidrug efflux pumps, secreted toxins and proteases, and various adhesins. Capsular polysaccharide may protect the organism from host defense mechanisms. This organism also carries a number of small sequence repeats which may promoter antigenic variation, similar to what was found with the B. mallei genome. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei K96243 Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living Homo sapiens Yes 272560 NC_006351.1 Bac0002463 Chlamydia trachomatis D/UW-3/CX "Chlamydia trachomatis D/UW-3/CX is a Gram-negative, coccoid bacterium that thrives in a range of body sites within the human host, predominantly in the urogenital tract, but also found in the conjunctiva and rectum. This microbe is classified as a chemoheterotroph, deriving its energy from organic compounds, and is notable for being an obligate intracellular pathogen, meaning it requires host cells for survival and replication. Chlamydia trachomatis has a temperature preference for the human body, typically around 37°C, allowing it to exploit its host effectively. As a Gram-negative organism, it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contribute to its virulence and immune evasion mechanisms. The coccoid shape of Chlamydia trachomatis aids in its ability to remain inside host cells and avoid detection by the immune system. Its obligate intracellular lifestyle means that it enters host epithelial cells, where it replicates within a specialized vacuole called an inclusion body.One of the most significant aspects of Chlamydia trachomatis infection is its potential for causing long-term health issues. Infections can lead to complications such as pelvic inflammatory disease, infertility, and chronic pain. Furthermore, Chlamydia trachomatis is also responsible for the leading cause of preventable blindness globally, known as trachoma, highlighting its broader public health implications. This microbe's ability to exist in various body sites and adapt to the host environment underscores its role as a notable pathogen in human health." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis D/UW-3/CX Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic Homo sapiens Yes 272561 NC_000117.1 Bac0002464 Clostridium acetobutylicum ATCC 824 "Clostridium acetobutylicum ATCC 824 is a gram-positive, rod-shaped bacterium that thrives in a thermophilic environment, falling under the category of "" Mesophilic"" temperature preference. As a chemoheterotroph, it relies on organic compounds as its energy source, where it uses fermentation as its mode of energy production. This means that C. acetobutylicum ATCC 824 does not require light for energy, and instead, breaks down organic molecules to produce ATP. The bacterium's gram-positive staining characteristics indicate the presence of a thick peptidoglycan cell wall, which provides structural support and protection against external environmental factors. Its rod-shaped morphology allows it to adapt to various environments and interact with its surroundings effectively. C. acetobutylicum ATCC 824 is an obligate anaerobe, meaning that it cannot thrive in the presence of oxygen and is susceptible to damage or even death from exposure to atmospheric oxygen. This adaptation enables it to survive in environments where oxygen levels are low or absent, such as soil, sediments, and the human gastrointestinal tract. In terms of body sites, C. acetobutylicum ATCC 824 can be found in various parts of the human body, including the gut, skin, and reproductive tract. It is also commonly isolated from soil, sewage, and industrial environments. One of the most notable features of C. acetobutylicum ATCC 824 is its ability to produce a wide range of bioactive compounds, including acetone, butanol, and ethanol, which are produced during fermentation. This microbe has been extensively studied in the context of industrial biofuel production, biotechnology, and bioremediation. Furthermore, C. acetobutylicum ATCC 824 has been found to possess genes involved in the biosynthesis of antimicrobial compounds, such as antimicrobial peptides and bacteriocins. These compounds have been shown to exhibit potent antimicrobial activity against other microorganisms, making this microbe a valuable subject for further research into antimicrobial resistance and the development of novel antibiotics." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium acetobutylicum ATCC 824 Positive Rod Yes 1 1 Anaerobe 10 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles Sporulating No 272562 NC_001988.2 Bac0002465 Clostridioides difficile 630 "Clostridioides difficile 630 is a gram-positive, rod-shaped bacterium that thrives in anaerobic environments, characterized by its temperature preference for mesophilic conditions, within the range of 25-40°C. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically glycans, peptides, and proteins, in the absence of light. This microbe is an obligate anaerobe, requiring a low oxygen environment to survive, which is typical of many Clostridium species. Upon staining, C. difficile 630 exhibits a characteristic Gram-positive reaction, indicating a thick peptidoglycan layer in its cell wall. Its rod-shaped morphology, also known as a bacillus, is a defining feature of the genus Clostridium. In terms of its habitat, C. difficile 630 can be found colonizing the gastrointestinal tract of humans and animals, as well as other body sites, including the skin, respiratory tract, and genitourinary tract. This microbe's ability to produce energy is attributed to its fermentation process, where it converts glucose into lactate, acetate, and other short-chain fatty acids. This process is anaerobic, occurring in the absence of oxygen, which is typical of many anaerobic microbes. Despite its ability to thrive in anaerobic environments, C. difficile 630 has been linked to severe infections in humans, particularly in healthcare settings. The microbe's ability to adhere to epithelial cells and produce potent toxins, A and B, contributes to its pathogenic potential. Furthermore, the development of antibiotic resistance in C. difficile 630 has made treatment challenging, highlighting the importance of continued research and infection control measures. In addition to its importance in human health, C. difficile 630 has also been used as a model organism in research studies, particularly in the fields of microbiology, immunology, and infectious disease. Its ability to colonize the gastrointestinal tract and produce toxins has made it an important tool for studying the interactions between microbes and the host immune system." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs-Singles-Chains Sporulating 272563 NC_008226.2 Bac0002466 Gluconacetobacter diazotrophicus PA1 5 str. PAl 5 "Gluconacetobacter diazotrophicus PA1 5 str. PAl 5 is a Gram-negative, rod-shaped bacterium that exists as single cells and thrives in host-associated habitats. This microbe is an aerobic organism, requiring oxygen for its metabolic processes, and it exhibits a unique ability to utilize atmospheric nitrogen as its primary energy source, classifying it as a diazotroph. The optimal growth temperature for G. diazotrophicus PA1 5 str. PAl 5 is approximately 30.0°C, indicating a preference for moderately warm environments.↵↵This bacterium is particularly noteworthy for its nitrogen-fixing capabilities, which can play a significant role in enhancing soil fertility and promoting plant growth in its associated habitats. The association with hosts suggests potential symbiotic relationships, where G. diazotrophicus may contribute to the nutrient dynamics of the host and the surrounding ecosystem. Such interactions could have implications for agricultural practices, particularly in sustainable systems that aim to reduce reliance on chemical fertilizers. The ability of G. diazotrophicus to thrive in specific ecological niches underscores its potential importance in microbial community dynamics and nutrient cycling within host-associated environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus Negative Rod No 1 2 Aerobe 30 Diazotroph Mesophilic HostAssociated Symbiotic Singles 272568 NC_010123.1 Bac0002467 Haloarcula marismortui ATCC 43049 Haloarcula marismortui ATCC 43049. This organism was isolated from the Dead Sea and will provide information on the proteins necessary for adaptation to a high salt environment. (NCBI BioProject: bp_list[1]) Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula marismortui ATCC 43049 No 1 Aerobe 40 Chemoorganotroph Mesophilic Aquatic Free living Singles Nonsporulating No 272569 NC_006393.1 Bac0002468 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 "Klebsiella pneumoniae subsp. pneumoniae MGH 78578 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites of humans, including the respiratory, urinary, and gastrointestinal tracts, as well as the skin and mucous membranes, of all possible species, and is a facultative anaerobe. As a Gram-negative bacterium, it has a thin peptidoglycan layer in its cell wall, which contributes to its resistance to certain antibiotics. Its rod shape allows it to move and colonize efficiently in different environments. The mesophilic temperature preference of this bacterium enables it to grow optimally at temperatures between 20-45°C, making it well-suited to thrive in the human body. As a chemoheterotroph, Klebsiella pneumoniae subsp. pneumoniae MGH 78578 relies on organic compounds for energy and carbon, which it obtains from its host or environment. Its ability to inhabit various body sites makes it a versatile and opportunistic pathogen. Additionally, its facultative anaerobic nature allows it to survive in both aerobic and anaerobic conditions, making it a formidable opponent for the human immune system. This microbe has been found to possess a large genome, comprising approximately 5.3 million base pairs, which encodes for various virulence factors and antibiotic resistance genes, contributing to its ability to cause severe infections, particularly in individuals with compromised immune systems, and its genome has been extensively studied to understand its evolution and virulence mechanisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae MGH 78578 Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Homo sapiens Chains - Pairs - Singles Nonsporulating No 272620 NC_009653.1 Bac0002469 Lactococcus cremoris subsp. cremoris SK11 "Lactococcus cremoris subsp. cremoris SK11 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 40.0°C, indicating a preference for warm environments. It is part of a broader group of lactic acid bacteria, which are known for their utility in food fermentation processes, particularly in dairy products.↵↵The coccoid morphology of L. cremoris SK11 contributes to its role in the fermentation of lactose, which is a key characteristic of lactic acid bacteria. As a facultative anaerobe, this microbe can grow in both the presence and absence of oxygen, allowing it to inhabit diverse environments, although its specific habitat preferences remain unspecified. ↵↵Lactococcus cremoris subsp. cremoris SK11's ability to thrive at elevated temperatures suggests potential applications in industrial fermentation processes, where controlled thermal conditions are often employed to enhance microbial activity and product yield. This characteristic may also imply that the strain could play a role in niche environments where temperature fluctuations are minimal, thereby contributing to stable fermentation outcomes. Understanding the ecological role of such microorganisms can provide insights into their applications in biotechnology and food science." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 272622 NC_008505.1 Bac0002470 Lactococcus lactis subsp. lactis Il1403 "Lactococcus lactis subsp. lactis Il1403 is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites of numerous species, including the gastrointestinal tract of humans, animals, and even plants. As a facultative anaerobe, it can survive in both aerobic and anaerobic environments, making it a versatile microorganism.The Gram-positive characteristic is due to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining procedure. Its spherical shape is a result of the rigid cell wall that provides structural support and maintains the cell's shape. The mesophilic temperature preference allows Lactococcus lactis subsp. lactis Il1403 to grow best in temperatures between 20-40°C, making it suitable for various industrial and environmental applications. As a chemoheterotroph, Lactococcus lactis subsp. lactis Il1403 relies on external sources of energy and organic compounds, such as sugars and amino acids, to sustain its growth and metabolic activities. Its ability to inhabit various body sites, including the gut and skin of different species, highlights its adaptability and potential to interact with diverse host environments. The facultative anaerobic nature of Lactococcus lactis subsp. lactis Il1403 enables it to adjust its metabolic pathways according to the availability of oxygen, allowing it to thrive in a range of ecosystems. Lactococcus lactis subsp. lactis Il1403 has been extensively studied for its potential in biotechnology and food production, particularly in the production of fermented dairy products, such as cheese and yogurt, due to its ability to ferment lactose and produce lactic acid. Its genome has been fully sequenced, providing valuable insights into its genetic makeup and metabolic capabilities, and has been used as a model organism to explore the intricacies of microbial physiology and genetics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Il1403 Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating No 272623 NC_002662.1 Bac0002471 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 "Legionella pneumophila is the causative agent of the Legionnaires' disease, a potentially fatal pneumonia. It was isolated after an outbreak of pneumonia at an American legion convention in Philadelphia. Legionella pneumophila is found in biofilms and fresh and industrial water systems worldwide. It can survive and replicate intracellularly in free-living protozoa, often in aquatic biofilms. Legionella pneumophila (strain Corby) is an aerobic human isolate. (HAMAP: LEGPC)" Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Philadelphia 1 Negative Rod Yes 1 2 Aerobe Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 272624 NC_002942.5 Bac0002472 Listeria innocua Clip11262 "Listeria are mainly soil bacteria, though as a pathogen they are food-borne. They are intracellular pathogens that use actin filaments within the host cell for their motility. L. monocytogenes is the causative agent of listeriosis.The genomes of both Listeria monocytogenes and Listeria innocua have been sequenced. The genome of Listeria monocytogenes is 2,944,528 bp long with 2853 open reading frames and a G+C content of 39%. The genome of Listeria innocua is 3,011,209 bp long with 2973 open reading frames and a G+C content of 37%. Surprisingly, many encoded proteins are similar to those of the soil bacterium Bacillus subtilis. L. monocytogenes has a single circular chromosome, while L. innocua contains an additional plasmid of 81,905 bp.The ability of Listeria to inhabit a wide range of environments coincides with the presence of 331 genes encoding different transport proteins, comprising 11.6% of the total gene compliment of L. monocytogenes. Listeria also has an extensive regulatory repertoire occupying 7.3% of the total genome.Listeria are non spore-forming, nonbranching, Gram-positive rods that occur individually or form short chains. Listeria are able to produce adenosine triphosphate thorugh a complete respiratory chain, and have several fermentation pathways. This coincides with their lifestyle as microaerophilic, facultative anaerobes. Listeria are intecellular pathogens that use host-produced actin filaments for motility within the host cell. The bacteria propel themselves through the cytoplasm of an infected cell using a tail composed of actin.Listeria colonies are small, smooth and blueish-gray. Their optimum growth temperature is between 30 and 37 degrees Celsius, but growth can occur at temperatures as low as 4 degrees Celsius, but the generation time is longer. Listeria is widely distributed throughout the environment, inhabiting soil, decaying vegetable matter, sewage, water, animal feed, fresh and frozen poultry, processed meats, raw milk, cheese, and humans. But primary habitats are considered to be soil and decaying vegetable matter, living as a saprophyte. Listeria can also survive in many extreme conditions that it encounters during its lifespan, such as high salt concentrations, high pH, and high temperature. Both pathogenic and innocuous forms of listeria have this ability. Listeria spp. also form biofilms, which allow them to attach to solid surfaces where they proliferate and become extremely difficult to remove.Listeria monocytogenes is the etiological agent of listeriosis. L. monocytogenes is a food-borne pathogen, which, as mentioned earlier, can survive normal refrigeration processes. It can cause severe disease in immunocompromised individuals, and pregnant women. Listeria is an intracellular pathogen where they co-opt the cell's machinery, and travel through the blood stream, once they make it through the gastrointestinal tract. After ingestion of contaminated food, Listeria migrates from the intestinal lumen to the central nervous system, and the fetoplacental unit. The clinical manifestations of listeriosis include meningitis, meningoencephalitis, septicemia, abortion, perinatal infection, and gastroenteritis. Listeria is capable of infecting macrophages, which aquire the pathogen through phagocytosis, or epithelial cells, which are infected when listeria induces cytoskeletal changes and plasma membrane extensions. (From http://microbewiki.kenyon.edu/index.php/Listeria) (MicrobeWiki: Listeria)" Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria innocua Clip11262 Positive Rod Yes 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles Nonsporulating No 272626 NC_003212.1 Bac0002473 Paramagnetospirillum magnetotacticum MS-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Magnetospirillaceae Paramagnetospirillum Paramagnetospirillum magnetotacticum 272627 JXSL00000000.1 Bac0002474 Methylorubrum extorquens AM1 str. DM4 "Methylorubrum extorquens AM1 str. DM4 is a Gram-negative, rod-shaped bacterium capable of methylotrophic metabolism, utilizing methanol and other one-carbon compounds as its primary energy sources. This organism can be found in diverse habitats, reflecting its adaptability and ecological versatility. Typically, M. extorquens AM1 str. DM4 exists in cell arrangements that include single cells and pairs, facilitating various forms of growth and interaction within its environment.↵↵The optimal growth temperature for this strain is approximately 25.0°C, indicating a preference for moderate temperature conditions. As a facultative aerobe, M. extorquens AM1 str. DM4 can thrive in both aerobic and anaerobic environments, allowing it to exploit a wide range of ecological niches. This flexibility in oxygen requirements may contribute to its survival in fluctuating environmental conditions, such as those found in soil or water.↵↵Overall, the metabolic capabilities and physiological traits of Methylorubrum extorquens AM1 str. DM4 highlight its potential role in biogeochemical cycles, particularly in the conversion of methanol into biomass and energy, which may have implications for carbon cycling in various ecosystems. The ability to utilize methylated compounds positions this strain as an important player in the microbial community, potentially influencing nutrient dynamics and contributing to ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum extorquens Negative Rod Yes 1 2 Facultative aerobe 25 Methylotroph Mesophilic Multiple Free living Pairs - Singles 272630 NC_012988.1 Bac0002475 Methylorubrum extorquens AM1 "Methylorubrum extorquens AM1 is a Gram-negative, rod-shaped bacterium that exhibits a versatile metabolic capacity as a methylotroph, utilizing single-carbon compounds as its primary energy source. This microbe can adapt to various habitats, demonstrating a remarkable ability to thrive in diverse environmental conditions. Methylorubrum extorquens AM1 typically exists as single cells or in pairs, reflecting its flexible cellular arrangement.↵↵Optimal growth temperature for this organism is approximately 25.0°C, which suggests a preference for moderate environmental temperatures. As a facultative aerobe, Methylorubrum extorquens AM1 can grow in both the presence and absence of oxygen, which allows it to occupy a range of ecological niches, potentially including both aerobic and microaerophilic environments.↵↵The metabolic versatility of Methylorubrum extorquens AM1 not only enables it to utilize methanol and other methylated compounds but also positions it as a potential player in biotechnological applications, such as bioremediation and carbon cycling. Its ability to thrive in varied conditions underscores the ecological significance of methylotrophic bacteria in global carbon dynamics, particularly in environments where organic carbon is limited." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum extorquens Negative Rod Yes 1 2 Facultative aerobe 25 Methylotroph Mesophilic Multiple Free living Pairs - Singles 272630 NC_012809.1 Bac0002476 Malacoplasma penetrans HF-2 "Malacoplasma penetrans HF-2 is a Gram-negative coccal bacterium characterized by its single-cell arrangement and facultative anaerobic metabolism. This microbe thrives at an optimal temperature of 37.0°C, suggesting a close association with warm-blooded hosts, potentially indicating its adaptation to a host-associated habitat. ↵↵As a facultative anaerobe, M. penetrans HF-2 possesses the metabolic versatility to grow in both the presence and absence of oxygen, allowing it to exploit various environments within its host. The coccoid shape of this organism may influence its interactions within the host's microbiome, potentially affecting nutrient acquisition or competitive dynamics with other microbial inhabitants.↵↵Understanding the physiological traits of M. penetrans HF-2 provides insights into its potential roles in host-associated environments. Given its temperature preference and oxygen utilization capabilities, it may play a specific role in the microbial community structure of its host, contributing to metabolic processes that are integral to host health and homeostasis. Further investigations into its interactions and functions within the host-associated microbiome could enhance our understanding of its ecological significance." Bacillati Mycoplasmatota Mollicutes Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans Negative Cocci No 1 1 Facultative 37 Mesophilic HostAssociated Free living Singles 272633 NC_004432.1 Bac0002477 Mycoplasmopsis pulmonis UAB CTIP "Mycoplasmopsis pulmonis UAB CTIP is a Gram-negative coccus that typically exists as single cells and is characterized as a facultative anaerobe, thriving optimally at 37.0°C. This microbe is associated with host environments, suggesting a potential role in the microbiota of its host organisms. ↵↵The Gram-negative nature of Mycoplasmopsis pulmonis UAB CTIP indicates that it possesses a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions within host systems. Its coccus shape and arrangement as singles may contribute to its adaptability in various environments, allowing it to respond effectively to changes in host physiology.↵↵Being a facultative anaerobe, Mycoplasmopsis pulmonis UAB CTIP can metabolize energy through both aerobic respiration and fermentation, providing it with a versatile means of survival in differing oxygen conditions. This adaptability could allow it to persist in fluctuating environments within host tissues, where oxygen availability may vary.↵↵The association of Mycoplasmopsis pulmonis UAB CTIP with host organisms may reflect its involvement in complex microbial communities, potentially influencing host health and homeostasis. Understanding the specific ecological roles and interactions of this microbe could provide insights into the dynamics of host-associated microbiomes and their impacts on host physiology." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis Negative Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Singles 272635 NC_002771.1 Bac0002478 Pasteurella multocida subsp. multocida str. Pm70 "Organisms of the genus Pasteurella are Gram-negative, non-motile, facultatively anaerobic coccobacilli belonging to the gamma division of proteobacteria.Pasteurella multocida, named after Louis Pasteur for his early work on attenuated bacteria as vaccines is a multi-species pathogen which causes serious diseases in animals and humans. This bacterium is the causative agent of fowl cholera in chickens and turkeys, hemorrhagic septicemia in cattle, atrophic rhinitis in pigs, and infections in humans from dog and cat bites.This agent is responsible for annual losses of several hundred million dollars to animal production. Furthermore, this pathogen is estimated to infect approximately 20-50% of the 1 to 2 million Americans (primarily children) who are bitten by dogs and cats each year. Patients tend to exhibit swelling, cellulitis and bloody drainage at the wound site. Infection may move to nearby joints where it can cause swelling and arthritis.Researchers have identified two Pm proteins which resemble the filamentous hemagglutinin (fha) genes found in the whooping cough bacterium, Bordella pertussis. These proteins are components of the whooping cough vaccine and may prove useful for preventing infections caused by Pm. The fha proteins help the pertussis bacterium grab onto the host cell, and the Pm versions of these proteins may play similar roles, making them promising vaccine targets.In spite of the important economic impact due to P. multocida infections in food animals and the large numbers of people infected each year worldwide, very little is known about the genetic basis for the virulence of this organism and it still remains unclear how the organism is able to colonize, evade the immune system, and become established in a wide variety of hosts.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Pm70 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chicken- Homo sapiens Yes 272843 NC_002663.1 Bac0002479 Pyrococcus abyssi GE5 "Pyrococcus has similar characteristics of other archaea such as Archaeoglobus, thermoautotrophican, and Methanococcus in its that they are all thermophilic and anaerobic. Pyrococcus differs, however, because it's optimal growth temperature is nearly 100oC and dwells at a greater sea depth than the other archaeons. Studying Pyrococcus helps give insight to possible mechanisms used to endure extreme environmental conditions like high temperatures and high pressure.The cells of Pyrococcus are about 0.8- 2um and are slightly irregular cocci in shape. They show a polar grouping of flagella and are enveloped by an S-layer enclosing a periplasmic space around the cytoplasmic membrane. Pyrococcus species are anaerobic but vary slightly concerning their metabolism. Peptide fermentation is the principle metabolic pathway however, growth has been observed for P. furiosus and P. abyssi on starch, maltose, and pyruvate but not for P. horikoshii. While the presence of elemental sulfur is not needed for growth, growth is enhanced with the addition of So.Pyrococcus species inhabit environments with extremely high temperatures such as undersea hot vents. Optimal growth conditions include a pH level of about 7, a salt concentration around 2.5%, and a temperature around 98oC. Growing in temperatures this high, it is easy to see why they are anaerobic since at these boiling temperatures hardly any oxygen will be available. In the example of undersea hot vents, where P. abyssi has been found, there is no sunlight and the pressure is around 200 atm in addition to the extremely high temperature. (From http://microbewiki.kenyon.edu/index.php/Pyrococcus) (MicrobeWiki: Pyrococcus)" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus abyssi GE5 Cocci No 1 1 Anaerobe 103 Hyperthermophilic Aquatic Free living Nonsporulating No 272844 NC_001773.1 Bac0002480 Rhodobacter sphaeroides 2.4.1 "Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) is an alphaproteobacterium. It harbors 2 chromosomes and five plasmids. It possesses an extensive range of energy acquiring mechanisms including photosynthesis, lithotrophy, aerobic and anaerobic respiration. It can also fix molecular nitrogen, synthesize important tetrapyrroles, chlorophylls, heme, and vitamin B12. It has also been shown to detoxify a number of metal oxides and oxyanions and is the subject of ongoing studies on bioremediation and is the first free living bacterium known to utilize the regulatory systems associated with quorum-sensing. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides 2.4.1 Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains No 272943 NC_007488.2 Bac0002481 Rickettsia sibirica 246 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia sibirica 272951 NZ_AABW01000001.1 Bac0002482 Bacillus taeanensis str. BH030017 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus taeanensis 273032 QOCW00000000.1 Bac0002483 Thermoplasma acidophilum DSM 1728 "A thermoacidophilic archaeon, Thermoplasma is a fascinating microorganism whose study can give new insight into how extremophiles can live in such conditions missing some of the generic cell structure that other thermophilic's have. Protease and chaperone assemblies from Thermoplasma have helped illuminate the structure and function of their more complex eukaryotic homologues.The T. acidophilum genome consists of a single circular chromosome of 1,564,906 bp. No plasmids were detected through biochemical methods or DNA sequencing, but a 15.2kbp has previously been reported in other isolates. The genome for T. volcanium is composed of 1,584,804 bp. There has been apparent lateral gene transfer between T. acidophilum and Sulfolobus solfataricus mainly including protein degradation pathways and various transport proteins. These two microorganisms are phylogenetically distant with S. sulfolobus being a crenarchaeon, but they do share the same living environment. While Thermoplasma may share around 252 open reading frames (17%) with Sulfolobus, but surprisingly, no homologues of the genes that mediate sulphur respiration in Archaeoglobus (a fellow archaeon) were found. Instead, homologues of genes that mediate dissimilatory sulphur reduction in Salmonella typhimurium were present. Thermoplasma also contain proteins not present in other archaeal genome including Hta, an archaeal DNA-binding protein that is closely related to bacterial proteins and appear to substitute functionally for the missing histones.Thermoplasma live in extreme environments without a protective outer layer (S-layer, cell wall) and survive with only a plasma membrane. Not to mention they retain a near neutral cytoplasm. They have flagella and are motile, although it is unclear what structure can function as the stator for flagellar rotation. Thermoplasma can metabolize like Sulfolobus through glucose degradation which eventually leads to the TCA cycle. Thermoplasma contain several respiratory chain proteins such as electron transfer flavoproteins and cytochrome b homologues. They are also able to gain energy anaerobically, however, by sulfur respiration.Environments that have characteristics including a pH level between 0.5 - 4.0 with temperatures ranging from 55-60oC are where you can find Thermophiles. Optimum growth conditions are about pH 2 and 60oC. Strands have been isolated from self-heating coal refuse piles and solfatara fields. (From http://microbewiki.kenyon.edu/index.php/Thermoplasma) (MicrobeWiki: Thermoplasma)" Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmataceae Thermoplasma Thermoplasma acidophilum DSM 1728 Rod No 1 1 Facultative anaerobe 59 Thermophilic Specialized Free living Nonsporulating No 273075 NC_002578.1 Bac0002484 Yersinia pseudotuberculosis IP 32953 "Yersinia pseudotuberculosis IP 32953 is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, categorized as a facultative anaerobe and a chemoheterotroph. This organism is part of the genus Yersinia, which includes notable pathogens such as Yersinia pestis, the causative agent of plague. Yersinia pseudotuberculosis primarily resides in the gastrointestinal tracts of animals, especially rodents, and can be found in various other body sites including lymph nodes, intestines, and occasionally in the bloodstream during systemic infection. As a Gram-negative bacterium, Yersinia pseudotuberculosis possesses a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, contributing to its virulence and resilience in diverse environments. Its rod shape (bacillus) facilitates motility and colonization within host tissues. The mesophilic temperature preference allows it to grow optimally at temperatures similar to that of warm-blooded animals, enhancing its ability to infect mammals. Being a facultative anaerobe, Yersinia pseudotuberculosis has the versatility to derive energy through both aerobic respiration and fermentation, depending on the availability of oxygen. This adaptability aids in its survival across various habitats, including anaerobic conditions within the gut. As a chemoheterotroph, it relies on organic compounds for energy and carbon, typically obtained from the host, making it a successful enteric pathogen. Yersinia pseudotuberculosis is associated with gastroenteritis in humans, often transmitted through contaminated food or water. This microbe’s pathogenic mechanisms involve the secretion of virulence factors that enable it to invade host cells, evade immune responses, and establish infection. The study of this bacterium not only provides insights into infectious diseases but also contributes to our understanding of microbial ecology and the interactions between pathogens and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pseudotuberculosis IP 32953 Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles Nonsporulating Yes 273123 NC_006154.1 Bac0002485 Brevibacterium aurantiacum Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 NRGQ00000000.1 Bac0002486 Brevibacterium aurantiacum str. SMQ-1420 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 NZ_CP025334.1 Bac0002487 Microbacterium oleivorans "Microbacterium oleivorans is a Gram-positive, rod-shaped bacterium that thrives optimally at mesophilic temperatures, functioning as a chemoheterotroph. This microbe is typically found in various environments, including soil, plant surfaces, and marine ecosystems, where it plays a significant role in the biodegradation of hydrocarbons, particularly in oil-contaminated environments. As a Gram-positive organism, M. oleivorans possesses a thick peptidoglycan layer in its cell wall, which is characteristic of bacteria in the Firmicutes phylum. This structural feature not only contributes to its resistance against certain antibiotics but also plays a crucial role in the microbe's overall stability and environmental adaptability. Its rod shape, or bacillary form, allows for efficient nutrient uptake and mobility, enhancing its survival in diverse habitats. Being a mesophilic bacterium, M. oleivorans prefers moderate temperatures, typically thriving between 20°C to 37°C. This temperature preference aligns with the natural habitats where it is commonly found, making it well-suited for its ecological role. As a chemoheterotroph, M. oleivorans derives energy and carbon from organic compounds, particularly oils, which it metabolizes effectively, aiding in the bioremediation of environments affected by petroleum spills. Moreover, M. oleivorans is classified as an obligate aerobe, requiring oxygen for its growth and metabolic processes. This requirement underscores its ecological niche, as it actively participates in the degradation of organic pollutants in aerobic conditions. M. oleivorans has also been studied for its potential applications in bioremediation and environmental biotechnology, due to its ability to degrade complex hydrocarbons. This remarkable property not only highlights its ecological significance but also its potential for use in cleaning up oil spills and other environmental contaminants." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oleivorans Positive Aerobe dust 273677 SMZX00000000.1 Bac0002488 Microbacterium hydrocarbonoxydans Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium hydrocarbonoxydans 273678 JYJB00000000.1 Bac0002489 Thermococcus thioreducens str. DSM 14981 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus thioreducens 277988 LIXN00000000.1 Bac0002490 Thermococcus thioreducens Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus thioreducens 277988 FOIW00000000.1 Bac0002491 Mycolicibacterium gilvum Spyr1 "Mycolicibacterium gilvum Spyr1 is a Gram-positive, rod-shaped bacterium that exists as single cells and exhibits aerobic metabolism. This microbe is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which is consistent with its terrestrial habitat. ↵↵The Gram-positive nature of M. gilvum Spyr1 suggests the presence of a thick peptidoglycan layer in its cell wall, a characteristic that often influences its resilience in various environments. The rod shape and solitary arrangement of the cells may provide advantages in nutrient uptake and metabolic efficiency, particularly in aerobic conditions where oxygen is readily available. ↵↵While specific ecological roles of M. gilvum Spyr1 have not been detailed, its terrestrial habitat implies a potential involvement in soil microbiomes, where it could contribute to organic matter decomposition or nutrient cycling. Understanding its metabolic capabilities may reveal insights into its interactions within microbial communities, especially in relation to organic substrates in terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium gilvum Positive Rod No 1 1 Aerobic Chemoorganotroph Mesophilic Terrestrial Free living Singles 278137 NC_014814.1 Bac0002492 Mesorhizobium sp. WSM1497 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. WSM1497 278153 NZ_CP021070.1 Bac0002493 Opitutaceae bacterium TAV4 Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutaceae bacterium TAV4 278959 LXWU00000000.2 Bac0002494 Streptomyces ambofaciens ATCC 23877 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces ambofaciens 29 mesophilic 278992 NZ_CP012382.1 Bac0002495 Collimonas arenae str. Cal35 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas arenae 279058 NZ_CP009963.1 Bac0002496 Collimonas pratensis str. Ter291 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas pratensis 279113 NZ_CP013236.1 Bac0002497 Microcella alkaliphila str. AC4r Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microcella Microcella alkaliphila 279828 SGXT00000000.1 Bac0002498 Microcella alkaliphila str. JAM-AC0309 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microcella Microcella alkaliphila 279828 NZ_AP017315.1 Bac0002499 Suttonella ornithocola "Suttonella ornithocola is a Gram-negative, rod-shaped bacterium that exhibits non-spore-forming characteristics and has an optimal growth temperature of 32.0°C. This microbe is notable for its distinct morphology and growth preferences, which can offer insights into its ecological niche and potential associations within its environment.↵↵As a member of the broader microbial community, Suttonella ornithocola's Gram-negative cell wall structure may contribute to its interactions with other microorganisms and host organisms, influencing its survival and adaptability in specific habitats. The non-spore-forming nature of this bacterium suggests a reliance on favorable environmental conditions for growth and reproduction, which may limit its resilience to extreme stressors compared to spore-forming taxa.↵↵The optimal temperature of 32.0°C indicates that Suttonella ornithocola may thrive in moderate environments, potentially reflecting its adaptation to specific ecological niches, such as those found in avian hosts or associated habitats. This temperature preference might also suggest that the bacterium plays a role in the microbiome of birds or other warm-blooded animals, where it could contribute to nutrient cycling or microbial interactions.↵↵Overall, the characteristics of Suttonella ornithocola provide a foundation for understanding its potential ecological roles and interactions, particularly in avian environments where temperature and microbial diversity can significantly influence community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Suttonella Suttonella ornithocola Gram-negative rod non-motile 32 mesophilic non-spore-forming 279832 UHIC00000000.1 Bac0002500 Acinetobacter colistiniresistens str. NIPH 1859 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter colistiniresistens 280145 APRZ00000000.1 Bac0002501 Acinetobacter courvalinii "Acinetobacter courvalinii is a Gram-negative bacterium belonging to the genus Acinetobacter, which encompasses a diverse group of opportunistic pathogens. This microbe is nonsporulating and exhibits mesophilic characteristics, thriving in moderate temperature ranges typically between 20°C and 45°C. As a chemoheterotroph, A. courvalinii utilizes organic compounds as its energy source, which allows it to grow in various environments where organic matter is present. While the specific habitat of A. courvalinii remains largely uncharacterized, members of the Acinetobacter genus are often found in soil, water, and within the human microbiome, suggesting a proclivity for diverse ecological niches. These bacteria are known for their resilience and ability to survive in harsh conditions, which can contribute to their presence in hospital environments, where they may act as opportunistic pathogens. One ecological insight into A. courvalinii is its potential role in bioremediation efforts. Like other Acinetobacter species, it may possess the capacity to degrade pollutants, including hydrocarbons, in contaminated environments. This ability not only underscores its ecological versatility but also highlights its potential utility in environmental clean-up strategies. Understanding and harnessing the metabolic pathways of A. courvalinii could pave the way for innovative applications in biotechnology and environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter courvalinii Negative No 1 Chemoheterotroph Mesophilic Nonsporulating 280147 APSA00000000.1 Bac0002502 Bradyrhizobium pachyrhizi str. BR3262 "Bradyrhizobium pachyrhizi str. BR3262 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. As a member of the genus Bradyrhizobium, this strain is part of a group of bacteria known for their symbiotic relationships with leguminous plants, facilitating nitrogen fixation, which is crucial for soil fertility. The rod shape of B. pachyrhizi str. BR3262 is characteristic of many bacteria within the Rhizobiaceae family, contributing to its adaptability in various environments.↵↵The aerobic requirement of this strain indicates that it utilizes oxygen for its metabolic processes, which may influence its distribution and survival in soil ecosystems. This trait, coupled with its optimal growth temperature, suggests that B. pachyrhizi str. BR3262 may play a significant role in specific climatic regions that provide favorable conditions for its growth and activity. ↵↵Understanding the physiological traits of B. pachyrhizi str. BR3262 enhances our comprehension of its ecological niche, particularly its potential contributions to sustainable agriculture through its interactions with host plants. This strain's specific temperature preference and oxygen requirements may also inform agricultural practices aimed at optimizing nodulation and nitrogen fixation, ultimately benefiting crop yields in suitable environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium pachyrhizi Gram-negative rod aerobic 29 mesophilic 280333 LJYE00000000.1 Bac0002503 Leptospira borgpetersenii serovar Ballum str. 56604 "Leptospira borgpetersenii serovar Ballum str. 56604 is a Gram-negative, non-sporulating bacterium characterized by its distinctive spirilla shape. This microbe is categorized as an aerobe, indicating that it requires oxygen for its metabolic processes. It is primarily found in host-associated environments, suggesting a close relationship with its biological hosts, which could include a variety of mammals. ↵↵The spirilla morphology of L. borgpetersenii allows for a unique motility that may contribute to its ecological niche, enabling it to effectively navigate through fluid environments associated with its hosts. Its aerobic nature implies that it thrives in aerobic conditions, potentially influencing its distribution and interactions within host-associated habitats. The non-sporulating characteristic suggests that this organism relies on its host environment for survival and reproduction, as it does not produce spores for resilience against adverse conditions.↵↵Understanding the ecological role of L. borgpetersenii serovar Ballum str. 56604 could provide insights into its interactions with host organisms and the potential implications for the microbial communities in which it resides, particularly in terms of symbiotic relationships or pathogenic potential. Further research is necessary to explore the specific host interactions and environmental factors that shape the ecological dynamics of this bacterium." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 280505 NZ_CP012030.1 Bac0002504 [Bacillus thuringiensis] serovar konkukian str. 97-27 "Bacillus thuringiensis serovar konkukian str. 97-27 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and functions as a facultative aerobe. This strain is part of the diverse Bacillus genus, known for its ability to thrive in various habitats, which may include soil and plant materials, allowing it to adapt to multiple ecological niches.↵↵The facultative aerobic nature of Bacillus thuringiensis str. 97-27 suggests that it can utilize oxygen when available but can also switch to anaerobic metabolism in its absence, enhancing its survival in fluctuating environmental conditions. Its sporulation ability enables the formation of resilient spores that can endure extreme conditions, contributing to its persistence in diverse environments.↵↵Due to its ecological versatility, Bacillus thuringiensis serovar konkukian str. 97-27 may play significant roles in its native ecosystems, including nutrient cycling and possibly interacting with other microbial communities. This adaptability not only supports its survival but may also facilitate its utilization in applications such as biocontrol in agriculture, where its traits could be leveraged for pest management. Understanding the ecological functions of this strain could provide insights into its potential benefits in sustainable agricultural practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative aerobe Mesophilic Multiple Free living Sporulating 281309 NC_005957.1 Bac0002505 Haemophilus influenzae 86-028NP "Haemophilus influenzae 86-028NP is a gram-negative, rod-shaped bacterium that thrives at a mesophilic temperature preference, is classified as a chemoheterotroph, and is a facultative anaerobe. This microbe primarily colonizes the mucosal surfaces of the human respiratory tract, notably the nasopharynx, but can also be found in other body sites such as the ears, sinuses, and lungs.As a gram-negative organism, Haemophilus influenzae has a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contribute to its virulence and ability to evade the host immune system. Its rod shape facilitates motility and colonization within mucosal tissues. The mesophilic temperature range indicates that H. influenzae optimally grows at body temperature, which aids its survival in human hosts. Being a chemoheterotroph means it derives energy from organic compounds, predominantly through the catabolism of carbohydrates and proteins, rather than performing photosynthesis or utilizing inorganic molecules. As a facultative anaerobe, Haemophilus influenzae can grow in both aerobic and anaerobic conditions, which allows it to effectively colonize various niches within the respiratory tract and adapt to fluctuating oxygen levels in the host environment.This specific strain, 86-028NP, has been studied for its role in respiratory diseases such as pneumonia and bronchitis. Additionally, it has contributed to our understanding of bacterial pathogenesis and the mechanisms of capsular virulence, as it produces a polysaccharide capsule that is crucial for evading the host's immune response. Such studies underscore the importance of H. influenzae in clinical microbiology and infectious disease research, illuminating potential avenues for vaccine development and therapeutic interventions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae 86-028NP Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living Homo sapiens Yes 281310 NC_007146.2 Bac0002506 Dechloromonas denitrificans str. ATCC BAA-841 "Dechloromonas denitrificans str. ATCC BAA-841 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This versatility is complemented by its optimal growth temperature of 29.0°C, indicating a preference for mesophilic conditions. As a member of the microbial community, D. denitrificans plays a significant role in the nitrogen cycle, particularly in the process of denitrification, where nitrate is reduced to nitrogen gas or nitrous oxide. ↵↵The ability to adapt to varying oxygen levels suggests that D. denitrificans could occupy various ecological niches, including wastewater treatment systems where oxygen levels fluctuate. This adaptability not only enhances its survival but also emphasizes its potential utility in bioremediation strategies aimed at reducing nitrogen pollution in aquatic ecosystems. By participating in denitrification processes, D. denitrificans contributes to the regulation of nitrogen levels, which is crucial for maintaining ecological balance and preventing eutrophication in natural water bodies." Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Azonexaceae Dechloromonas Dechloromonas denitrificans Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 281362 LODL00000000.1 Bac0002507 Acinetobacter marinus Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter marinus 281375 FMYK00000000.1 Bac0002508 Thermincola carboxydiphila Bacillati Bacillota Clostridia Eubacteriales Thermincolaceae Thermincola Thermincola carboxydiphila 281456 LGTE00000000.1 Bac0002509 Planktothrix agardhii NIES-204 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix agardhii 282423 AP017993.1 Bac0002510 Bartonella quintana str. Toulouse str. Toulose "Bartonella quintana strain Toulouse is a Gram-negative, rod-shaped bacterium that is nonsporulating and exhibits an aerobic metabolism. This microbe thrives optimally at 37.0 degrees Celsius, which aligns with the body temperature of its typical mammalian hosts. As a host-associated organism, B. quintana is primarily found in the bloodstream of infected individuals, where it may establish a niche that facilitates its survival and replication. ↵↵The aerobic nature of B. quintana suggests a reliance on oxygen for its metabolic processes, which may influence its distribution and interactions within host tissues. Understanding the specific environmental conditions and host interactions of B. quintana strain Toulouse can provide valuable insights into its biology and potential roles in human health. Given its adaptation to a mammalian host environment, further exploration of its ecological relationships may reveal important aspects of its life cycle and transmission, particularly in urban settings where it has been historically associated with conditions such as trench fever. This highlights the significance of studying host-associated bacteria like B. quintana, as they may offer insights into the dynamics of microbial communities in human-dominated ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella quintana Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Nonsporulating 283165 NC_005955.1 Bac0002511 Fructobacillus durionis "Fructobacillus durionis is a Gram-positive, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This species is notable for its unique physiological traits, particularly its ability to ferment fructose, which may play a significant role in its metabolic processes and ecological niche. The rod shape of F. durionis contributes to its adaptability in various environments, potentially influencing its interactions with other microorganisms.↵↵As a member of the Lactobacillaceae family, F. durionis may be involved in fermentation processes, which are crucial in food microbiology and could have implications in the production of fermented foods. The optimal growth temperature suggests a preference for cooler environments, which could indicate its presence in specific ecological niches such as low-temperature fermentation systems or certain plant-associated habitats.↵↵Understanding the traits of Fructobacillus durionis could provide insights into its role in microbial communities, particularly in cooler climates or in association with certain fruits, where it may contribute to the flavor and preservation of food products. Further investigation into its metabolic capabilities and ecological interactions would help clarify the significance of this bacterium in its native habitat." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructobacillus Fructobacillus durionis Gram-positive rod non-motile 16 psychrotolerant non-spore-forming 283737 FOLI00000000.1 Bac0002512 Bizionia paragorgiae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bizionia Bizionia paragorgiae 283786 FNQK00000000.1 Bac0002513 Streptomyces variegatus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces variegatus 29 mesophilic 284040 JYJH00000000.1 Bac0002514 Onishia taeanensis Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Onishia Onishia taeanensis 284577 FNCI00000000.1 Bac0002515 Onishia taeanensis str. USBA-857 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Onishia Onishia taeanensis 284577 QLSX00000000.1 Bac0002516 Priestia koreensis str. DSM 16467 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia koreensis 284581 LILC00000000.1 Bac0002517 Streptomyces agglomeratus str. 6-3-2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces agglomeratus 285458 MEHJ00000000.1 Bac0002518 Streptomyces bungoensis str. DSM 41781 "Streptomyces bungoensis str. DSM 41781 is a Gram-positive bacterium recognized for its optimal growth at a temperature of 29.0 °C. This strain is part of the Streptomyces genus, which is notable for its filamentous growth form and extensive secondary metabolite production. The Gram-positive nature indicates a thick peptidoglycan layer in its cell wall, a characteristic that is common among many members of the Actinobacteria phylum.↵↵The optimal temperature of 29.0 °C suggests that S. bungoensis str. DSM 41781 thrives in mesophilic conditions, which is typical for many soil-dwelling actinobacteria. This temperature preference may influence its ecological role, particularly in decomposing organic materials and cycling nutrients within its habitat. ↵↵The ability of Streptomyces species to produce a variety of bioactive compounds, including antibiotics, is a significant aspect of their biology. While specific metabolic capabilities of S. bungoensis str. DSM 41781 are not detailed here, its belonging to a genus renowned for such traits suggests potential applications in biotechnology and pharmaceuticals. Understanding the growth characteristics and environmental preferences of this strain can shed light on its ecological functions, particularly in soil ecosystems where it may contribute to microbial diversity and the degradation of complex organic compounds." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces bungoensis Positive 29 mesophilic 285568 LMWX00000000.1 Bac0002519 Micromonospora coriariae Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora coriariae 285665 NZ_LT607412.1 Bac0002520 Mesobacillus subterraneus str. DSM 13966 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Mesobacillus Mesobacillus subterraneus 285983 RSFW00000000.1 Bac0002521 Photorhabdus australis subsp. thailandensis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus australis 286156 LOMY00000000.1 Bac0002522 Yoonia rosea "Yoonia rosea is a Gram-negative, rod-shaped bacterium known for its ability to form spores and thrive in aerobic environments. This organism exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. The production of spores indicates an adaptation mechanism for survival in fluctuating conditions, allowing Yoonia rosea to endure unfavorable environments by entering a dormant state. ↵↵While specific ecological roles remain to be fully characterized, the combination of its aerobic metabolism and spore-forming capability may suggest a role in nutrient cycling within its habitat. This adaptation could also indicate potential for survival in soil or decaying plant matter, where oxygen is available, and competition with other microbial communities is prevalent. The unique traits of Yoonia rosea highlight its potential significance in ecological interactions, particularly in environments where aerobic decomposition processes are critical. Further investigation into its ecological niche may reveal insights into its contributions to microbial diversity and function in its native habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Yoonia Yoonia rosea Gram-negative rod non-motile aerobic 25 mesophilic spore-forming 287098 FTPR00000000.1 Bac0002523 Haliea salexigens "Haliea salexigens is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0 °C. This microbe is part of the diverse assemblage of halophilic organisms, which suggests a potential adaptation to saline environments, although specific habitat details are not provided in the available data. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, characteristic of many bacteria in aquatic and soil ecosystems.↵↵The optimal temperature for Haliea salexigens suggests that this organism is well-suited for moderate thermal environments, potentially contributing to its ecological niche in coastal or estuarine regions. Furthermore, its aerobic nature implies a reliance on oxygen for metabolic processes, which may influence its distribution and interactions within microbial communities.↵↵Given these traits, Haliea salexigens may play a significant role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling in saline aquatic systems, where it could interact with other microorganisms to maintain ecosystem function. The ability to thrive in a specific temperature range while requiring oxygen highlights its potential importance in understanding microbial dynamics in changing environments, particularly as salt concentrations and temperatures fluctuate due to climate change." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Haliea Haliea salexigens Gram-negative rod aerobic 29 mesophilic 287487 DMND00000000.1 Bac0002524 Amycolatopsis rifamycinica str. DSM 46095 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis rifamycinica 29 mesophilic 287986 JMQI00000000.1 Bac0002525 Bradyrhizobium sp. BTAi1 "Bradyrhizobium sp. BTAi1 is a Gram-negative, bacilli-shaped microbe that occurs as single cells and is classified as a nonsporulating organism. This bacterium thrives in mesophilic conditions, indicating an optimal living temperature that typically falls within moderate ranges conducive to microbial growth. As a facultative anaerobe, Bradyrhizobium sp. BTAi1 can survive and grow in both aerobic and anaerobic environments, making it versatile in various ecological niches. This strain is particularly noteworthy for its ability to perform nitrogen fixation, a crucial process wherein atmospheric nitrogen (N2) is converted into ammonia (NH3), making nitrogen accessible to plants. As a chemoheterotroph, it derives energy not only from organic compounds but also plays a significant role in nutrient cycling within soil ecosystems. Its presence contributes to enhanced soil fertility and promotes plant growth, particularly in leguminous species, with which it often forms symbiotic relationships. An intriguing aspect of Bradyrhizobium sp. BTAi1 is its potential impact on sustainable agriculture. By naturally enriching soil nitrogen levels, this microbe can reduce the need for chemical fertilizers, thus mitigating environmental pollution and supporting more sustainable farming practices. Its ability to coexist in diverse soil conditions further highlights its importance in maintaining soil health and promoting biodiversity, making it a valuable organism in ecological research and agricultural applications." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. BTAi1 BTAi1 Negative Rod Yes 1 2 Aerobe Photosynthetic Mesophilic HostAssociated Symbiotic Singles Nonsporulating No 288000 NC_009475.1 Bac0002526 Bacillus cereus E33L str. ZK "Bacillus cereus E33L str. ZK is a Gram-positive, rod-shaped bacterium that typically forms chains and is capable of sporulation. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As an aerobic organism, it requires the presence of oxygen for growth and metabolic activities. ↵↵B. cereus strains, including E33L str. ZK, are commonly found in terrestrial habitats, which suggests a potential association with soil ecosystems. Given its ability to form spores, this bacterium may exhibit resilience to adverse environmental conditions, allowing it to survive in various terrestrial environments where nutrient availability and moisture levels fluctuate. ↵↵The characteristic chain formation observed in this strain could play a role in its ecological interactions, potentially influencing its ability to colonize surfaces or compete with other microbial communities in its habitat. Understanding the environmental adaptations and survival mechanisms of B. cereus E33L str. ZK may provide insights into its role within soil microbial ecosystems and its contributions to nutrient cycling processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Terrestrial Free living Chains Sporulating 288681 NC_006274.1 Bac0002527 Bordetella ansorpii Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella ansorpii 288768 FKIF00000000.1 Bac0002528 Clostridium perfringens SM101 "Clostridium perfringens SM101 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic conditions, making it an obligate anaerobe. This microbe prefers a temperature range of 30-37°C, classifying it as mesophilic. C. perfringens SM101 is a heterotroph, relying on organic compounds as a source of carbon and energy for growth, which occurs primarily in oxygen-deprived environments like the intestines of humans and animals, soil, and decaying organic matter. As an obligate anaerobe, C. perfringens SM101 cannot survive in the presence of oxygen, and its metabolic processes are adapted to utilize fermentation pathways. This bacterium's ability to produce various enzymes allows it to break down proteins, sugars, and complex carbohydrates, facilitating its survival in environments where competing microorganisms might struggle. The organism is commonly associated with foodborne illnesses, particularly in improperly stored meats, as it can multiply rapidly and produce potent toxins that lead to conditions such as gas gangrene, and enterotoxemia. In addition to its pathogenic potential, C. perfringens SM101 is noteworthy for its role in industrial applications, such as waste treatment and bioremediation, where its robust enzymatic activity can assist in the breakdown of organic pollutants. This microbe also serves as a model organism in research settings, aiding scientists in understanding anaerobic metabolism and the complexities of microbial interactions in ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens SM101 Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles - Chains Sporulating Yes 289380 NC_008264.1 Bac0002529 Mycoplasmopsis bovis PG45 "Mycoplasmopsis bovis PG45 is a Gram-negative, coccoid microbe that typically exists in a single-cell arrangement and is classified as a nonsporulating organism. This species thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to mammalian hosts, where such temperatures are commonly found. As a chemoheterotroph, Mycoplasmopsis bovis PG45 derives its energy from organic compounds, reflecting its dependence on host-derived nutrients within its habitat. Its facultative oxygen requirement indicates that this microbe can grow in both aerobic and anaerobic environments, which may enhance its survival and adaptability within diverse host-associated niches. ↵↵The specific ecological roles of Mycoplasmopsis bovis PG45 remain to be fully elucidated, but its characteristics suggest that it may play a significant role in the microbial communities associated with animal hosts. The ability to thrive at mammalian body temperature and utilize a range of organic substrates could indicate a specialized niche within the host's microbiota, potentially contributing to the complex interactions between host health and microbial populations. This adaptability highlights the importance of studying such microbes within their ecological contexts to better understand their contributions to host-associated microbiomes." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis Negative Cocci No 1 1 Facultative 37 Chemoheterotroph Mesophilic HostAssociated Free living Singles Nonsporulating 289397 NC_014760.1 Bac0002530 Eubacterium coprostanoligenes Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium coprostanoligenes 290054 FUWW00000000.1 Bac0002531 Citrobacter koseri ATCC BAA-895 "Citrobacter koseri ATCC BAA-895 is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, prefers to utilize organic compounds as a carbon source, and is classified as a facultative anaerobe. This species belongs to the Enterobacteriaceae family and is commonly found in the human gut, as well as in various environmental sources such as soil and water.The gram-negative characteristic of C. koseri signifies a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contributes to its virulence. Its rod shape is typical of many Enterobacteriaceae, providing mobility and surface area for nutrient absorption. As a mesophilic organism, C. koseri flourishes between 30°C and 37°C, making it well-suited for growth within human body temperatures. The facultative anaerobic nature of this microbe allows it to adapt to both aerobic and anaerobic environments, giving it the flexibility to survive in various ecological niches. C. koseri is predominantly found in the intestinal tracts of humans and animals, where it plays a role in the gut microbiome. It can also be isolated from clinical specimens, particularly in immunocompromised patients, where it is associated with opportunistic infections. Pathogenic strains have been implicated in neonatal meningitis and other serious infections, emphasizing the importance of understanding this bacterium in clinical settings. Additionally, C. koseri exhibits biochemical versatility, which allows it to metabolize a wide range of substrates. This metabolic adaptability, coupled with its potential pathogenicity, makes it a significant subject of research within microbiology and infectious disease studies. Its ability to form biofilms may also contribute to its persistence in hospital environments, where it can pose a risk to vulnerable populations." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter koseri ATCC BAA-895 Negative Yes 1 2 Facultatively anaerobe Mesophilic Multiple Free living Homo sapiens Yes 290338 NC_009794.1 Bac0002532 Cronobacter sakazakii ATCC BAA-894 "Cronobacter sakazakii ATCC BAA-894 is a gram-negative, rod-shaped bacterium that thrives in mesophilic conditions, showing a temperature preference of around 30-37°C. As a chemoheterotroph, it relies on organic compounds for energy and carbon, making it adaptable to various environments. This bacterium is classified as a facultative anaerobe, allowing it to grow in the presence or absence of oxygen, although it prefers aerobic conditions. Cronobacter sakazakii is known for its presence in various environments, notably in dried foods such as powdered infant formula and other food products. Its versatility allows it to inhabit not only food sources but also environmental niches like soil and water. The ability to survive desiccation and resist harsh conditions makes it a significant concern for food safety. This pathogen can colonize the gastrointestinal tract, and its implications are particularly severe in neonates and immunocompromised individuals, leading to conditions like meningitis and enteritis. In terms of pathogenicity, Cronobacter sakazakii has been associated with severe infections, especially in infants, where it may cause necrotizing enterocolitis. It can produce biofilms, contributing to its persistence in food-processing environments, complicating efforts at decontamination. Furthermore, this microbe exhibits resistance to multiple antibiotics, raising concerns in clinical settings regarding treatment efficacy. In addition to its health implications, research has demonstrated that Cronobacter sakazakii possesses unique biochemical properties that allow for the production of various enzymes, leading to potential applications in biotechnology. The ongoing study of this bacterium continues to shed light on its role in food safety and human health, making it a subject of great scientific interest." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii ATCC BAA-895 Negative Rod No Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 290339 NC_009780.1 Bac0002533 Paenarthrobacter aurescens TC1 "Paenarthrobacter aurescens TC1 is a Gram-positive, rod-shaped bacterium that thrives in terrestrial habitats and requires oxygen for growth, classifying it as an aerobe. This microbe is nonsporulating, indicating that it does not form spores as a means of survival under adverse conditions. The optimal growth temperature for P. aurescens TC1 is 30°C, suggesting a preference for moderate environmental conditions that are typical of many soil-dwelling bacteria.↵↵Given its aerobic nature, P. aurescens TC1 likely plays a significant role in the aerobic degradation of organic matter within its terrestrial habitat. Its nonsporulating characteristic may reflect an adaptation to environments where conditions are relatively stable and conducive to growth, reducing the need for sporulation as a survival strategy. This bacterium may contribute to nutrient cycling and soil health, highlighting its potential importance in ecological contexts such as soil microbiomes and biogeochemical processes. Understanding the specific metabolic pathways and interactions of P. aurescens TC1 within its environment could provide insights into its role in soil ecology and its potential applications in bioremediation or sustainable agriculture practices." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter Paenarthrobacter aurescens Positive Rod No 1 1 Aerobe 30 Mesophilic Terrestrial Free living Nonsporulating 290340 NC_008712.1 Bac0002534 Borreliella bavariensis PBi "Borreliella bavariensis PBi is a Gram-negative bacterium characterized by its spirilla shape and aerobic metabolism. This microbe is primarily host-associated, indicating a close relationship with specific hosts, although the precise host organisms have not been specified. As an aerobe, B. bavariensis PBi requires oxygen for its growth and survival, which may influence its distribution and interactions within host environments.↵↵The Gram-negative classification of B. bavariensis PBi suggests the presence of a distinctive outer membrane containing lipopolysaccharides, which may play a role in its interaction with the host's immune system. The spirilla morphology may facilitate motility, potentially aiding in colonization and the establishment of relationships with host tissues. ↵↵Understanding the ecological role and potential interactions of Borreliella bavariensis PBi within its host environment is critical, as it may contribute to the overall microbiome dynamics and influence host health. This reflects the broader theme of microbial diversity and its implications for host organisms, highlighting the intricate interdependencies that characterize host-associated microbial communities." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella bavariensis Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living 290434 NC_006129.1 Bac0002535 Prosthecochloris aestuarii DSM 271 "Prosthecochloris aestuarii is a non-motile, spherical to ovoid green sulfur bacterium that forms 10 to 20 non-branching prosthecae per cell (the function of these structures is unknown). It is anaerobic and obligately photoautotrophic in growth mode. Strain SK413 is the type species for the genus Prosthecochloris, and the organism was originally isolated from the hydrogen sulfide-rich mud of a shallow lagoon with elevated salt concentration and described in 1970. The cells produce bacteriochlorophyll c, bacteriochlorophyll a, and chlorophyll a as well as chlorobactene and its hydroxylated derivative as the major photosynthetic pigments. P.aestuarii can fix nitrogen, lacks gas vesicles, and has an elevated requirement for salt (range: 0.2 to 10% NaCl; optimum 0.5 to 2% NaCl) (adapted from http://genome.jgi-psf.org/finished_microbes/proae/proae.home.html). (EBI Integr8)" Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii DSM 271 Negative Cocci No 1 2 Anaerobe 30 Photosynthetic Mesophilic Aquatic Free living No 290512 NC_011061.1 Bac0002536 Gluconobacter oxydans 621H "Gluconobacter oxydans 621H.Genome sequencing of Gluconobacter oxydans 621H (DSM 2343) has identified a number of membrane-bound dehydrogenases. The glucose/sorbitol dehydrogenase is responsible for the oxidation of D-sorbitol, gluconate and glycerol, producing L-sorbose, 5-ketogluconate and dihydroxyacetone, respectively. Other identified membrane-bound dehydrogenases include the alcohol, glucose, and sorbitol dehydrogenases, which are involved in acetate, gluconate, and D-fructose formation, respectively. In addition to the dehydrogenases with a recognized substrate, 75 putative dehydrogenase/oxidoreductases, 23 of which are thought to be membrane bound, have been identified in the genome sequence. Expression studies of G. oxydans grown on glucose has shown that a number of these uncharacterized oxidoreductases are transcribed and presumably have a role in cellular metabolism.The plasmids in G. oxydans strain 621H are not homologous to plasmids from other G. oxydans strains. Identified genes include those for plasmid replication, a DNA helicase II, a restriction/modification system, a heavy metal resistance system and, on the megaplasmid, genes for DNA transfer via conjugation. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter oxydans 621H Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living Singles No 290633 NC_006675.1 Bac0002537 Helicobacter pylori 51 "Helicobacter pylori 51 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the typical human body temperature, indicating its adaptation to a host-associated habitat. H. pylori 51 exhibits microaerophilic oxygen requirements, suggesting that it prefers environments with lower levels of oxygen than are present in the atmosphere, a trait which supports its survival in the gastrointestinal tract where oxygen levels are limited.↵↵The unique morphology and specific growth conditions of H. pylori 51 contribute to its ecological niche within the host. This bacterium's ability to inhabit the acidic environment of the stomach, coupled with its microaerophilic nature, underscores its specialization for survival in a highly competitive and hostile ecosystem. As H. pylori 51 interacts with the host, it may influence the local microbial community dynamics and contribute to the overall health or disease state of the gastrointestinal tract. The understanding of its traits provides insight into its potential role in host-microbe interactions, emphasizing the importance of studying such organisms within their natural contexts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 290847 NC_017382.1 Bac0002538 Photorhabdus asymbiotica str. ATCC 43949 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus asymbiotica 291112 NC_012962.1 Bac0002539 Methylophaga muralis Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga muralis 291169 MCRI00000000.1 Bac0002540 Algoriphagus yeomjeoni str. DSM 23446 "Algoriphagus yeomjeoni strain DSM 23446 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This microbe thrives optimally at a temperature of 29.0°C, suggesting a potential preference for moderate environmental conditions. Its Gram-negative classification indicates the presence of an outer membrane, which may contribute to its adaptability in various aquatic environments.↵↵As an aerobic organism, A. yeomjeoni relies on oxygen for its metabolic processes, which could influence its distribution in oxygen-rich niches, such as coastal waters or sediment layers. The specific environmental conditions under which this bacterium flourishes could provide insights into its ecological role, particularly in biogeochemical cycles involving nitrogen or carbon, given the importance of aerobic respiration in these processes.↵↵The isolation of A. yeomjeoni from its native milieu may reflect its adaptation to specific ecological settings, potentially linking it to organic matter degradation or nutrient cycling in marine environments. Further research into its metabolic capabilities and interactions with other microorganisms could elucidate its function within microbial communities and its contribution to ecosystem dynamics." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus yeomjeoni Gram-negative rod non-motile aerobic 29 mesophilic 291403 QLLK00000000.1 Bac0002541 Micromonospora rifamycinica Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora rifamycinica 291594 NZ_LT607752.1 Bac0002542 Ruegeria sp. TM1040 Ruegeria sp. TM1040. This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. TM1040 TM1040 Negative Rod Yes Aerobe Phototroph Mesophilic Multiple Free living Pfiesteria piscicida 292414 NC_008043.1 Bac0002543 Thiobacillus denitrificans ATCC 25259 "Thiobacillus denitrificans is an obligate chemolithoautotrophic, facultative anaerobe bacterium. It is best known for its ability to couple the oxidation of inorganic sulfur compounds (such as hydrogen sulfide and thiosulfate) to denitrification. It is a natural agent for intrisic bioremediation of groundwater polluted with nitrate. In addition, it has been used in engineered water treatment systems for nitrate removal. Its ability to carry out nitrate-dependent Fe(II) oxidation under anaerobic conditions could influence metal and radionuclide transport in the subsurface, as ferric iron-containing minerals that may be formed, especially iron(III) oxides, are well-known for their ability to adsorb heavy metals and radionuclides, such as uranium. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus denitrificans ATCC 25259 Negative Rod No 1 2 Aerobe 28 Lithotroph - Chemolithotroph Mesophilic Multiple Free living Nonsporulating No 292415 NC_007404.1 Bac0002544 Symbiobacterium thermophilum IAM 14863 Symbiobacterium thermophilum is an uncultivable bacterium isolated from compost that depends on microbial commensalism. The Gram-stain result indicates that S.thermophilum is Gram-negative whereas the results of the 16S ribosomal DNA phylogenic study indicates that it belongs to the Gram-positive group. Proteins associated with the S-layer have been identified in S.thermophilum and Gram variability was observed in several S-layer-coated bacteria.(From http://www.expasy.org/sprot/hamap/SYMTH.html) (BacMap) Bacillati Bacillota Clostridia Eubacteriales Symbiobacteriaceae Symbiobacterium Symbiobacterium thermophilum IAM 14863 Positive Rod No 1 Microaerophilic 60 Thermophilic Terrestrial Free living Nonsporulating No 292459 NC_006177.1 Bac0002545 Mycobacterium florentinum "Mycobacterium florentinum is an ovoid, non-spore-forming bacterium that thrives under microaerophilic conditions, with an optimal growth temperature of 32.0°C. This species is part of the Mycobacterium genus, which is characterized by its unique cell wall structure that contains mycolic acids, contributing to its resilience in various environments.↵↵As a microaerophile, M. florentinum requires reduced levels of oxygen for optimal growth, which suggests an adaptation to specific ecological niches, possibly involving interactions with other microorganisms or host organisms in environments where oxygen levels fluctuate. The preference for a moderate temperature of 32.0°C may indicate a potential association with warm-blooded hosts or warmer environmental habitats, though further studies would be required to elucidate its specific ecological roles.↵↵Understanding the growth conditions and morphological characteristics of M. florentinum may provide insights into its environmental adaptations and potential interactions within microbial communities. The unique ovoid shape of this microorganism could also play a role in its survival strategies, influencing its metabolic processes and interactions with the surrounding environment. These traits highlight the importance of microbiological studies in uncovering the ecological significance of lesser-known species within the Mycobacterium genus." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium florentinum ovoid non-motile microaerophile 32 mesophilic non-spore-forming 292462 LQOV00000000.1 Bac0002546 Cyanobium gracile PCC 6307 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium gracile 292564 NC_019675.1 Bac0002547 Flavonifractor plautii "Flavonifractor plautii is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites across different species, including the gut, skin, and respiratory tract. As an Obligate Anaerobe, F. plautii requires the absence of oxygen to survive, which is reflected in its metabolic processes that are tailored to function optimally in low-oxygen environments. The Gram-positive characteristic of F. plautii indicates the presence of a thick peptidoglycan layer in its cell wall, providing structural support and protection against environmental stresses. Its rod-shaped morphology allows for efficient movement and interaction with its surroundings, facilitating the uptake of nutrients and the evasion of host immune responses. As a mesophile, F. plautii grows best in temperatures ranging from 20-45°C, making it well-suited to inhabit the warm, nutrient-rich environments found in various body sites. As a Chemoheterotroph, F. plautii relies on the degradation of organic compounds to obtain energy, which is consistent with its role in breaking down complex molecules in the gut and other environments. The ability of F. plautii to inhabit a wide range of body sites across different species highlights its adaptability and versatility as a microbe. Its obligate anaerobic nature has led to the evolution of unique metabolic pathways that enable it to thrive in low-oxygen environments, where other microbes may struggle to survive. F. plautii's ability to break down flavonoids, a class of plant compounds, has been implicated in the modulation of host-microbe interactions and the maintenance of a healthy gut microbiome." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii Positive Facultative anaerobe human gut microbiota 292800 CZAT00000000.1 Bac0002548 Sphingopyxis sp. 113P3 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. 113P3 292913 NZ_CP009452.1 Bac0002549 Rhodococcoides kroppenstedtii Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides kroppenstedtii 293050 FOJN00000000.1 Bac0002550 Martelella mediterranea str. USBA-857 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Martelella Martelella mediterranea 293089 PVUG00000000.1 Bac0002551 Bacillus stratosphericus str. 5Co "Bacillus stratosphericus str. 5Co is a rod-shaped bacterium characterized by its resilience and adaptability to various environments. This species belongs to the genus Bacillus, which is known for its ability to form endospores, although specific information about sporulation in this strain is not provided. The rod shape of Bacillus stratosphericus str. 5Co may confer advantages in motility and nutrient acquisition in diverse habitats.↵↵This organism's ability to thrive under varying conditions suggests potential for applications in biotechnology, particularly in processes requiring microbial resilience. Notably, members of the Bacillus genus are often investigated for their roles in bioremediation and agricultural enhancement due to their capacity to produce a range of enzymes and metabolites. ↵↵Bacillus stratosphericus str. 5Co may play a unique role in its native environment, possibly contributing to soil health or nutrient cycling, although specific ecological interactions remain to be elucidated. These traits underscore the potential significance of Bacillus stratosphericus str. 5Co in both natural ecosystems and biotechnological applications, warranting further study to explore its functional capabilities and interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus stratosphericus Rod 293386 MWKO00000000.1 Bac0002552 Alkaliphilus metalliredigens QYMF "Alkaliphilus metalliredigens (strain QYMF) is s an alkaliphilic, moderately halophilic metal-reducing bacterium phylogenetically associated with the Firmicutes. A. metalliredigens was isolated from borax leachate ponds. Alkaliphilus metalliredigens can reduce Fe(III)-citrate, Fe(III)-EDTA, Co(III)-EDTA, or Cr(VI) as electron acceptors with yeast extract or lactate as electron donors. Growth during iron reduction occurs over the pH range of 7.5 to 11.0, a sodium chloride range of 0 to 80 g/l and a temperature range of 4 degrees Celsius to 45 degrees Celsius. Optimal growth conditions during iron reduction in the presence of borate (2 g/l) were observed at a pH of 9.6, a sodium chloride concentration of 20 g/l and a temperature of approximately 35 degrees Celsius. A. metalliredigens is a strict anaerobe that can tolerate up to 1.5% (w/v) borax (Na2B4O7), and the cells are straight rods that produce endospores. The microorganism appears to be a novel metal-reducing bacterium that is distantly related to other commonly studied iron-reducing microorganisms. At the present time (December 2007), the most closely related microorganisms are Alkaliphilus transvaalensis and Alkaliphilus crotonatoxidans. (EBI Integr8)" Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Alkaliphilus Alkaliphilus metalliredigens QYMF Positive Rod Yes 1 1 Anaerobe Mesophilic Ponds Free living Sporulating No 293826 NC_009633.1 Bac0002553 Martinezella lusitana Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella lusitana 293958 FMAF00000000.1 Bac0002554 Anoxybacillus amylolyticus str. DSM 15939 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacteroides Anoxybacteroides amylolyticum 294699 NZ_CP015439.1 Bac0002555 Marinomonas aquimarina Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas aquimarina 295068 FLOC00000000.1 Bac0002556 Candidatus Berkiella aquae Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Berkiellales Candidatus Berkiellaceae Candidatus Berkiella Candidatus Berkiella aquae 295108 LKAJ00000000.2 Bac0002557 Bacteroides fragilis YCH46 "Bacteroides fragilis YCH46 is an anaerobic, Gram-negative, rod-shaped bacterium that thrives in human intestines, exhibiting a temperature preference for mesophilic conditions and functioning as a chemoheterotroph, utilizing organic compounds for energy production. This microbe is predominantly found in the gastrointestinal tract, where it plays a critical role in maintaining gut health, contributing to the complex microbiome that aids in digestion and nutrient absorption. As a mesophile, Bacteroides fragilis YCH46 grows optimally at moderate temperatures, which aligns with the conditions of the human body. Its classification as a chemoheterotroph indicates that it derives energy from organic substrates, metabolizing a variety of carbohydrates and proteins. This metabolic versatility allows it to thrive in the nutrient-rich environment of the intestines, where it can break down complex polysaccharides, contributing to the fermentation process and producing short-chain fatty acids that are beneficial for colon health. The Gram-negative characteristic of Bacteroides fragilis YCH46 is significant, as it possesses an outer membrane that contributes to its resistance against certain antibiotics. Its rod shape enhances its ability to colonize the intestinal mucosa, facilitating interactions with host tissues and other microbial species.Bacteroides fragilis YCH46 also plays a role in modulating the immune response, helping to maintain a balanced gut microbiota. An imbalance of this microbe has been associated with various gastrointestinal disorders, highlighting its importance in health and disease. Its ability to produce bacteriocins may also provide a competitive advantage against pathogenic bacteria, contributing to the overall stability of the gut ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis YCH46 Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Yes 295405 NC_006297.1 Bac0002558 Roseivirga echinicomitans str. KMM 6058 "Roseivirga echinicomitans strain KMM 6058 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic respiration and thrives optimally at a temperature of 16.0°C. This strain is characterized by its non-spore-forming nature, indicating that it does not produce spores as a means of survival under adverse conditions. ↵↵Given its specific temperature preference, R. echinicomitans str. KMM 6058 may be well-suited to cold marine environments, which aligns with the ecological niches often occupied by members of the Roseivirga genus. The aerobic respiration characteristic highlights its reliance on oxygen for metabolic processes, suggesting a potential role in nutrient cycling within its habitat. ↵↵Further studies on R. echinicomitans str. KMM 6058 could provide insight into its interactions within microbial communities in cold marine ecosystems and its potential contributions to biogeochemical processes in these environments." Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga echinicomitans Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 296218 LRDB00000000.1 Bac0002559 Solidesulfovibrio carbinolicus str. DSM 3852 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio carbinolicus 296842 NZ_CP026543.1 Bac0002560 Chryseobacterium shigense "Chryseobacterium shigense is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolism and thrives at an optimal temperature of 25°C. As a member of the genus Chryseobacterium, this microbe is characterized by its distinct cellular morphology and respiratory requirements, which contribute to its ecological niche. ↵↵The Gram-negative nature of C. shigense indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may impart specific advantages in terms of environmental resilience and interaction with other microbial entities. The rod shape of the organism is consistent with many members of this genus, facilitating motility and colonization in various environments.↵↵The preference for aerobic conditions suggests that C. shigense may play a role in nutrient cycling in oxygen-rich habitats, possibly contributing to the degradation of organic matter. Its optimal growth temperature of 25°C aligns with many environmental microbes, indicating a potential adaptation to temperate climates or habitats where such temperatures prevail.↵↵Given its physiological traits, Chryseobacterium shigense may be an important player in the microbial communities of soil or aquatic environments, where it could engage in competitive interactions with other microorganisms or participate in biogeochemical processes. Understanding the ecological role of C. shigense could provide insights into the dynamics of microbial communities and their responses to environmental changes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium shigense Gram-negative rod non-motile aerobic 25 mesophilic 297244 FTNY00000000.1 Bac0002561 Legionella pneumophila str. Lens "Legionella pneumophila is the causative agent of the Legionnaires' disease, a potentially fatal pneumonia. It was isolated after an outbreak of pneumonia at an American legion convention in Philadelphia. Legionella pneumophila is found in biofilms and fresh and industrial water systems worldwide. It can survive and replicate intracellularly in free-living protozoa, often in aquatic biofilms. Legionella pneumophila (strain Corby) is an aerobic human isolate. (HAMAP: LEGPC)" Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobe Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 297245 NC_006369.1 Bac0002562 Pseudolactococcus piscium MKFS47 "Pseudolactococcus piscium MKFS47 is a Gram-positive, nonsporulating cocci bacterium that typically forms chains. This morphological arrangement is characteristic of the genus, which is known to thrive in various environments. The cocci shape and chain-like cell arrangement suggest a potential role in nutrient cycling and microbial interactions within its ecological niche. ↵↵While the specific ecological role of Pseudolactococcus piscium MKFS47 remains to be fully elucidated, its Gram-positive nature indicates the presence of a thicker peptidoglycan layer, which may provide resilience against environmental stressors. This trait is often associated with microorganisms that inhabit diverse habitats, including those with fluctuating conditions. ↵↵The nonsporulating aspect of Pseudolactococcus piscium MKFS47 implies that, unlike some other bacteria, it does not produce spores as a means of survival under adverse conditions. This may suggest a reliance on other mechanisms for resilience, such as metabolic flexibility or rapid reproduction in favorable environments. ↵↵Overall, the traits of Pseudolactococcus piscium MKFS47 highlight its potential importance in microbial communities, particularly in contexts where chain-forming behavior may facilitate cooperative interactions or enhance nutrient acquisition strategies. Further study may reveal its specific ecological contributions and functional roles within its habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus piscium Positive Cocci No 1 Chains Nonsporulating 297352 NZ_LN774770.1 Bac0002563 Photobacterium profundum SS9 "This organism is a piezophile, that is it lives under high pressure, having been isolated at a depth of 2500 m. It grows over a broad (90 MPa) pressure range and is amenable to genetic manipulation. Like other Vibrionaceae it has 2 circular chromosomes and a 80 kb plasmid. It encodes two complete operons for F1F0 ATP synthase, one on each chromosome as well as three complete sets of cbb3 cytochrome oxidase genes; the one on chr. 2 was possibly acquired from an aproteobacterium, along with an unusual diheme cytochrome c gene. These findings support the idea that modified electron and proton transport are necessary for metabolic activity at high pressure. Confirmation that SS9 is a true piezophile comes from the observation that several stress-response genes are activated at atmospheric pressure (adapted from PubMed 15746425). (HAMAP: PHOPR)" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium profundum Negative Rod Yes 1 2 Facultative 15 Psychrophilic Multiple Free living Singles Nonsporulating No 298386 NC_005871.1 Bac0002564 Methylobacterium variabile str. DSM 16961 "Methylobacterium variabile str. DSM 16961 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and has an optimal growth temperature of 29.0°C. As a member of the Methylobacterium genus, this strain is characterized by its non-spore-forming nature, indicating a reliance on favorable environmental conditions for survival and proliferation.↵↵The aerobic metabolism of Methylobacterium variabile suggests that it plays a role in the cycling of methylated compounds in various environments, potentially contributing to carbon and nitrogen cycling processes. Its association with methylotrophic pathways, which allow it to utilize one-carbon compounds, may facilitate its adaptation to diverse ecological niches, including soil and plant environments.↵↵Given its specific temperature preference and aerobic requirements, Methylobacterium variabile str. DSM 16961 may exhibit an ecological significance in environments that are moderately warm and oxygen-rich, where it can compete effectively with other microbial populations. Further studies could elucidate its role in such ecosystems and its potential contributions to biogeochemical cycles." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium variabile Gram-negative rod aerobic 29 mesophilic non-spore-forming 298794 LABY00000000.1 Bac0002565 Tateyamaria omphalii str. DOK1-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tateyamaria Tateyamaria omphalii 299262 NZ_CP019312.1 Bac0002566 Enterobacter ludwigii str. EcWSU1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter ludwigii bat guano 299767 NC_016514.1 Bac0002567 Enterobacter ludwigii str. I42 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter ludwigii bat guano 299767 NZ_CP040606.1 Bac0002568 Enterobacter ludwigii str. P101 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter ludwigii bat guano 299767 NZ_CP006580.1 Bac0002569 Shigella dysenteriae Sd197 "Shigella dysenteriae Sd197 is a gram-negative, rod-shaped bacterium that belongs to the Enterobacteriaceae family. As a mesophilic organism, it thrives optimally at temperatures around 37°C. This microbe is classified as a chemoheterotroph, relying on organic compounds for energy and carbon, and is a facultative anaerobe, which means it can survive in both the presence and absence of oxygen.In terms of habitat, *Shigella dysenteriae* can primarily be found in the gastrointestinal tract of humans and other primates. It is known to inhabit the intestines, where it becomes pathogenic, causing bacillary dysentery. Transmission often occurs through contaminated food or water, emphasizing its significant role in public health concerns, especially in areas with poor sanitation.The pathogenicity of *S. dysenteriae* is largely attributed to its ability to invade the epithelial cells of the colon, leading to cell destruction and inflammatory responses. The bacterium produces a potent Shiga toxin, which can result in severe diarrhea, abdominal cramps, and even life-threatening complications, such as hemolytic uremic syndrome (HUS). Furthermore, *Shigella dysenteriae* exhibits notable resistance to many antibiotics, complicating treatment options for infections. This resistance often stems from the acquisition of plasmids carrying resistance genes, reflecting a growing concern for public health as it raises the stakes in controlling dysenteric outbreaks globally. Understanding the biology and pathogenic mechanisms of *S. dysenteriae Sd197* is crucial for developing effective prevention and therapeutic strategies against shigellosis, a disease that continues to impact vulnerable populations around the world." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella dysenteriae Sd197 Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 300267 NC_009344.1 Bac0002570 Shigella sonnei Ss046 "Shigella sonnei Ss046 is a gram-negative, rod-shaped bacterium that thrives optimally at moderate temperatures, categorizing it as a mesophile. As a chemoheterotroph, it derives energy from organic compounds and is a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions. This microbe primarily inhabits the human gastrointestinal tract, being a causative agent of bacillary dysentery, or shigellosis. The gram-negative cell wall structure of S. sonnei consists of a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This unique composition contributes to its virulence and resistance to certain antibiotics, making infections challenging to treat. The rod shape enhances its motility within the viscous environment of the intestinal lumen, facilitating colonization and invasion of epithelial cells. As a mesophilic organism, S. sonnei grows best at temperatures ranging from 30°C to 37°C, mirroring the body temperature of its human host. This temperature preference is crucial for its survival and pathogenicity. Being a facultative anaerobe enables S. sonnei to adapt to varying oxygen levels within the intestine, where it ferment carbohydrates to generate energy, even in low-oxygen environments. Shigella sonnei is notable for its ability to cause severe gastrointestinal illness with a low infectious dose—estimated at just 10 to 100 bacteria. This efficiency allows it to spread rapidly, particularly in crowded and unsanitary conditions, such as refugee camps or during outbreaks in institutional settings. The bacterium also has been the subject of research aimed at understanding its pathogenic mechanisms and potential vaccine development, given its significant public health implications." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sonnei Ss046 Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 300269 NC_009347.1 Bac0002571 Thermus thermophilus HB8 Not yet available. (HAMAP: THET8) Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus HB8 Negative NA NA 1 2 Aerobe 0 Thermophilic Specialized No 300852 NC_006463.1 Bac0002572 Roseburia hominis "Roseburia hominis is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites, including the gut, skin, and mucous membranes, across different species. As an Obligate Anaerobe, it requires a strict anaerobic environment to survive, which is reflected in its ability to flourish in low-oxygen conditions. The Gram-positive characteristic of R. hominis indicates the presence of a thick peptidoglycan layer in its cell wall, providing structural support and shape to the microbe. Its rod-shaped morphology allows for efficient absorption of nutrients and interaction with its environment. As a Chemoheterotroph, R. hominis relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its metabolic processes. This characteristic enables the microbe to inhabit a wide range of environments, from the human gut to soil and sediment. The mesophilic temperature preference of R. hominis allows it to thrive in temperatures between 20-45°C, making it well-suited to the conditions found in the human body. Its ability to inhabit various body sites, including those with limited oxygen availability, highlights its adaptability and resilience. R. hominis plays a crucial role in the degradation of complex polysaccharides and production of short-chain fatty acids, which can influence the host's immune system and overall health. Notably, research has shown that R. hominis is capable of producing butyrate, a key metabolite with anti-inflammatory properties, which may have implications for the treatment of various diseases, including inflammatory bowel disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia hominis Negative Anaerobe intestinal microbiome 301301 CYZJ00000000.1 Bac0002573 Roseburia faecis "Roseburia faecis is a nonsporulating, mesophilic, fermentative bacterium classified within the animal intestinal microflora. As a member of the human gut microbiome, R. faecis plays a crucial role in the digestion of complex polysaccharides, particularly dietary fibers, through its chemoheterotrophic metabolism. This bacterium utilizes a range of organic substrates, contributing to the fermentation process that generates short-chain fatty acids (SCFAs), such as butyrate, which are essential for maintaining gut health and overall metabolic balance. The presence of R. faecis is often associated with a healthy gut environment and has been linked to a variety of beneficial health outcomes, including anti-inflammatory effects and enhanced gut barrier function. It thrives in the intestine, where it contributes to the diverse microbial community that aids in the degradation of nutrients and fortification of host immunity. Interestingly, the abundance of R. faecis in the gut microbiota has been correlated with various dietary patterns, particularly those rich in fiber. This highlights the dynamic relationship between diet and microbial composition; an increase in fiber intakes, such as whole grains and fruits, can foster an environment conducive to the growth of R. faecis, thereby enhancing its therapeutic potential. This illustrates not only the importance of microbial diversity in the gut but also underscores dietary modulation as a strategic approach to promoting gut health and preventing metabolic disorders." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia faecis Positive No 1 anaerobic Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 301302 CVRR00000000.1 Bac0002574 Methanothrix harundinacea Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix harundinacea 301375 LGFT00000000.1 Bac0002575 Virgibacillus dokdonensis str. AK90 "Virgibacillus dokdonensis str. AK90 is a rod-shaped, spore-forming bacterium that exhibits Gram-positive characteristics. This microorganism is notably adapted to thrive at an optimal temperature of 37.0°C, suggesting a preference for mesophilic conditions commonly found in various environments. The ability to form spores may confer resilience to adverse environmental conditions, allowing the strain to survive in fluctuating habitats.↵↵The Gram-positive nature of Virgibacillus dokdonensis str. AK90 indicates a thicker peptidoglycan layer in its cell wall, which is a characteristic feature of this group of bacteria. This structural trait is often associated with increased resistance to certain antibiotics and environmental stressors, although the specific implications for this strain remain to be elucidated.↵↵Given its rod shape and spore-forming capability, Virgibacillus dokdonensis str. AK90 may play a role in soil health and nutrient cycling, as many members of the Virgibacillus genus are known to contribute to microbial communities that promote plant growth and soil fertility. Further research may reveal additional ecological roles or biotechnological applications, particularly in the context of its environmental resilience and metabolic capabilities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus dokdonensis Gram-negative / Gram-positive rod motile 37 mesophilic spore-forming 302167 NFZX00000000.1 Bac0002576 Ehrlichia ruminantium str. Gardel "Ehrlichia ruminantium is the causative agent of the heartwater disease that affects domestic and wild ruminants. The bacterium is transmitted by ticks of the genus Amblyomma. The disease is present throughout subsaharan Africa and on several Caribbean islands where it represents a major constraint to livestock production. It threatens to invade the Americas. Heartwater is characterized by fever, nervous signs, hydropericardium, hydrothorax, ascites, edema of the lungs, and high mortality. Its name comes from hydropericardium (an excessive amount of fluid within the sac surrounding the heart), which is commonly observed with this disease.(From http://www.expasy.org/sprot/hamap/EHRRG.html) (BacMap)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia ruminantium Negative Cocci No 1 2 Mesophilic HostAssociated Symbiotic No? 302409 NC_006831.1 Bac0002577 Haloferax larsenii Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax larsenii 302484 FOAD00000000.1 Bac0002578 Bifidobacterium animalis subsp. animalis "Bifidobacterium animalis subsp. animalis is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of approximately 39.0°C. This subspecies is part of the Bifidobacterium genus, which is commonly found in the gastrointestinal tracts of various mammals, including humans, where it plays a significant role in gut health.↵↵Bifidobacterium animalis subsp. animalis is notable for its ability to adapt to multiple habitats, suggesting a versatile ecological niche. The anaerobic nature of this bacterium indicates its reliance on fermentation processes to generate energy, which is crucial for its survival in environments devoid of oxygen. This metabolic characteristic allows Bifidobacterium animalis subsp. animalis to contribute to the fermentation of dietary fibers, producing short-chain fatty acids that can have beneficial effects on gut health and overall metabolism.↵↵Additionally, the ability of this bacterium to thrive at a relatively high optimal temperature may indicate its adaptation to warm-blooded hosts. This feature underscores the ecological relationship between Bifidobacterium animalis subsp. animalis and its mammalian hosts, as it highlights the potential for mutualistic interactions that can enhance the host's digestive efficiency and nutrient absorption. Such relationships are fundamental to understanding the dynamics of gut microbiota and their impact on health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis Positive Rod No 1 1 Anaerobe 39 Mesophilic Multiple Free living Nonsporulating 302912 NZ_CP015407.2 Bac0002579 Paenibacillus sp. MY03 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. MY03 302980 MXQD00000000.1 Bac0002580 Lactobacillus apis "Lactobacillus apis is a nonsporulating, mesophilic bacterium characterized by its bacilli shape and tendency to form chains. As a member of the Lactobacillus genus, it is a chemoheterotroph that primarily utilizes fermentative metabolism, deriving its energy from a variety of organic substrates. While specific details about its oxygen requirements are not well-defined, other Lactobacillus species are typically either facultatively anaerobic or anaerobic. L. apis is often found in diverse habitats, including the gastrointestinal tracts of insects, particularly bees, where it plays a crucial role in the fermentation processes that contribute to gut health and nutrient absorption. Its presence in these environments suggests a symbiotic relationship, aiding in the digestion of complex sugars and the production of beneficial compounds like lactic acid, which can suppress pathogenic microbes.Unique to L. apis is its potential role in the microbiota of honeybee hives, where it may influence the fermentation of honey and the microbiome stability of bee colonies. This bacteria’s ability to thrive in such specialized environments reflects the adaptability of Lactobacillus species and underscores their ecological significance in promoting the health of pollinators, which are vital for global agriculture. Understanding L. apis could pave the way for biotechnological applications in enhancing bee health, thus supporting biodiversity and ecosystems dependent on pollination." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus apis Positive Rod No 1 37 Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 303541 FMAN00000000.1 Bac0002581 Thauera sp. 28 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera sp. 28 303682 AMXA00000000.1 Bac0002582 Methanocella paludicola SANAE "Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) is a mesophilic, hydrogenotrophic methanogen archaeon isolated from an anaerobic, propionate-degrading enrichment culture, which was originally established from rice paddy soil. It belongs to an abundant and ubiquitous group of methanogens called rice cluster I (RC-I) whose members are most active and play a key role in methane production from rice paddy field (RPF). Growth of M. paludicola is observed at 25-40 degrees Celsius, with an optimum temperature range for growth of 35-37 degrees Celsius. The pH range for growth is 6.5-7.8, with an optimum at pH 7.0. It is able to utilize H2/CO2 and formate for growth and methane production. M. paludicola possesses the mcrA gene encoding the alpha subunit of methyl-coenzyme M reductase, a key enzyme in the methane production pathway. (Adaptated from PMID: 18398197). (HAMAP: METPS)" Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales Methanocellaceae Methanocella Methanocella paludicola SANAE Rod No 1 1 Anaerobic 37 Mesophilic Free living Singles No 304371 NC_013665.1 Bac0002583 Campylobacter lari RM2100 "Campylobacter lari RM2100 is a gram-negative, spiral-shaped bacterium characterized as a microaerophile and a chemoheterotroph, which thrives optimally at temperatures around 42°C. This microorganism is commonly found in various body sites of different species, particularly in the intestines of birds, mammals, and reptiles, where it plays a role in the gut microbiome. As a gram-negative organism, C. lari possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, giving it distinctive staining properties. Its spiral shape and motility, facilitated by a single polar flagellum, enable it to navigate the viscous environments of intestinal tracts, contributing to its virulence mechanisms. Microaerophilic in nature, C. lari requires reduced levels of oxygen for optimal growth, making it particularly well-suited to the anaerobic conditions found within the intestines. This oxygen dependency is crucial for its metabolic processes, as it relies on the fermentation of organic compounds as a primary energy source, classifying it as a chemoheterotroph. Notably, C. lari has been associated with gastrointestinal illnesses in humans, particularly through the consumption of contaminated water or undercooked poultry. Its pathogenic potential is underlined by its ability to evade the host immune response and adhere to intestinal epithelial cells, leading to inflammation and infection. Moreover, this microbe has garnered attention in research for its unique genetic and biochemical properties, which may offer insights into the broader Campylobacter genus, paving the way for novel therapeutic approaches to combat Campylobacter-related infections. The study of C. lari RM2100 emphasizes the importance of understanding microbial adaptation and survival strategies within diverse ecological niches." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari RM2100 Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Homo sapiens Chains - Singles Nonsporulating Yes 306263 NC_012040.1 Bac0002584 Corynebacterium jeikeium K411 "Corynebacterium jeikeium is a multidrug-resistant bacterium of the human skin flora. It has been recognized as a serious nosocomial pathogen. It causes a variety of severe nosocomial infections, most frequently associated with immunocompromised patients. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium K411 Positive Rod No 1 1 Facultative aerobe Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 306537 NC_003080.1 Bac0002585 Wolbachia endosymbiont of Drosophila ananassae Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Drosophila ananassae 307502 NSDR00000000.1 Bac0002586 Flavobacterium sp. 2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. 2 natural spring 308053 PEFC00000000.1 Bac0002587 Rhodovulum sp. MB263 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sp. MB263 308754 NZ_CP020385.1 Bac0002588 Coprothermobacter proteolyticus DSM 5265 "Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) is a rod-shaped, anaerobic, thermophilic proteolytic, Gram-positive bacterium isolated from a thermophilic digestor that was fermenting tannery wastes and cattle manure. This organism was originally classified as Thermobacteroides proteolyticus and subsequently assigned to the new genus of Coprothermobacter. C. proteolyticus has an optimum temperature for growth of 63 degrees Celsius. It is phylogenetically related (96.3 % sequence similarity) to Coprothermobacter platensis (a moderately thermophilic bacterium), and both show similar morphology and fermentation products. Both can reduce thiosulfate to sulfide with glucose as substrate. The thiosulfate addition clearly stimulates glucose utilization and growth. Anaerobic digestion is increasingly used for carbon decontamination of agroindustrial wastewaters. Proteins are frequently a major component of'such wastes, and their degradation, initiated by extracellular proteases, is often incomplete. The vast majority of full-scale digestors are mesophilic, however thermophilic treatment is also being explored as it may have advantages, especially for effluents produced at high temperature (adapted from PubMed 9828430). (EBI Integr8)" Pseudomonadati Coprothermobacterota Coprothermobacteria Coprothermobacterales Coprothermobacteraceae Coprothermobacter Coprothermobacter proteolyticus DSM 5265 Negative Rod No 1 1 Anaerobe 63 Thermophilic Specialized Free living Pairs - Singles Nonsporulating No 309798 NC_011295.1 Bac0002589 Dictyoglomus thermophilum H-6-12 "Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) is a Gram-negative, obligately anaerobic and extremely thermophilic bacterium isolated from a slightly alkaline hot spring (Tsuetae Hot Spring) in Kumamoto Prefecture, Japan. It has an optimum temperature for growth of 78 degrees Celsius and forms a characteristic cell-association structure called 'rotund bodies'. (EBI Integr8)" Pseudomonadati Dictyoglomota Dictyoglomia Dictyoglomales Dictyoglomaceae Dictyoglomus Dictyoglomus thermophilum H-6-12 Negative Rod No 1 2 Anaerobe 78 Chemoorganotroph Thermophilic Aquatic Free living Chains - Pairs - Singles Nonsporulating No 309799 NC_011297.1 Bac0002590 Haloferax volcanii DS2 "Haloferax volcanii (strain ATCC 29605 / DSM 3757 / IFO 14742 / NCIMB 2012 / DS2) is a moderate halophilic archaeon isolated from bottom sediment from the Dead Sea. H.volcanii possesses the properties of the halobacteria, but differs from the known species in two important respects; the cells are disc shaped and often cupped when grown under optimum conditions, and the optimum requirements for sodium chloride is in the range 1.7-2.5 molar which is about half of that generally reported for the halobacteria. The optimum sodium chloride concentration for growth is close to that found in the Dead Sea and the tolerance for magnesium chloride is very high. (adapted from PMID: 1190944 and 20333302). (HAMAP: HALVD)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii DS2 Rod No 1 1 Aerobe Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating No 309800 NC_013968.1 Bac0002591 Thermomicrobium roseum DSM 5159 str. DSM5159 "Thermomicrobium roseum DSM 5159 str. DSM5159 is a Gram-negative, rod-shaped bacterium characterized by its unique cellular arrangement, which occurs predominantly in pairs or as single cells. This microbe thrives optimally at a temperature of 70.0°C, indicating its preference for thermophilic environments. As an aerobe, Thermomicrobium roseum requires oxygen for its metabolic processes, aligning it with other organisms adapted to high-temperature habitats where oxygen is available.↵↵The specific habitat of Thermomicrobium roseum is described as specialized, suggesting that it occupies a niche that may be distinct from more common microbial environments. This specialization may confer advantages in terms of competition and survival in extreme conditions, potentially influencing biogeochemical cycles in its ecosystem.↵↵Understanding the traits of Thermomicrobium roseum provides insight into the adaptations required for life in high-temperature, oxygen-rich environments. Its unique metabolic requirements and thermal tolerance may play a vital role in the microbial community structure and function in geothermal ecosystems, highlighting the importance of thermophilic microbes in nutrient cycling and energy flow in extreme habitats." Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum Negative Rod No 1 1 Aerobe 70 Thermophilic Specialized Free living Pairs - Singles 309801 NC_011959.1 Bac0002592 Thermotoga neapolitana DSM 4359 "Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) is a hyperthermophilic bacterium isolated from black smoker in the bay near Naples, Italy. This organism, like other Thermotoga, produces a vast quantity of hydrogen in batch culture. It is being considered for use in projects to utilize waste carboydrates for the production of hydrogen gas for industrial purposes. A number of thermostable enzymes such as alkaline phosphatase are also produced by this bacterium and may be of use for industrial purposes. (adapted from : http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=21023). (HAMAP: THENN)" Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga neapolitana DSM 4359 Negative Rod No 1 2 Microaerophilic 70 Heterotroph Hyperthermophilic Specialized Free living Nonsporulating No 309803 NC_011978.1 Bac0002593 Phocaeicola plebeius "Phocaeicola plebeius is a Gram-negative, non-sporulating rod-shaped bacterium characterized as a chemoheterotroph, thriving in anaerobic environments. This microbe is primarily found within the intestinal microflora of animals, where it plays a role in the digestive processes and overall gut health. As an anaerobe, Phocaeicola plebeius is adapted to environments devoid of oxygen, which is typical of the intestinal tract, allowing it to efficiently utilize organic compounds derived from the host's diet.↵↵The presence of Phocaeicola plebeius in the gut microbiome suggests a potential interaction with other microbial species, contributing to the complex ecosystem of the intestinal environment. By participating in the fermentation of carbohydrates and the breakdown of proteins, this bacterium may influence nutrient absorption and gut health in its host. Furthermore, its classification within the intestinal microflora highlights its potential role in maintaining the balance of microbial communities, which is essential for preventing dysbiosis and supporting the immune system.↵↵Overall, Phocaeicola plebeius exemplifies the intricate relationships between intestinal microorganisms and their hosts, emphasizing the importance of anaerobic bacteria in sustaining gut homeostasis and aiding in digestion." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius Negative Rod No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 310297 QSJG00000000.1 Bac0002594 Phocaeicola coprocola "Methylotenera mobilis is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites across different species, including the human gut, soil, and aquatic environments, and is an obligate aerobe. As a gram-negative microbe, Methylotenera mobilis has a unique outer membrane composed of lipopolysaccharides, which provides it with a protective barrier against its environment. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients and interaction with its surroundings. The mesophilic temperature preference of Methylotenera mobilis enables it to grow optimally in temperatures ranging from 20-45°C, making it well-suited for a wide range of environments. As a chemoheterotroph, Methylotenera mobilis relies on organic compounds for energy and carbon, utilizing a variety of substrates, including methanol and other one-carbon compounds. This versatility in substrate utilization allows it to thrive in diverse environments, from soil and aquatic ecosystems to the human gut. The presence of Methylotenera mobilis in various body sites across different species highlights its ability to adapt and survive in different niches. As an obligate aerobe, Methylotenera mobilis requires oxygen to grow, which is essential for its energy-producing metabolic processes. Methylotenera mobilis has been found to play a significant role in the biodegradation of methanol and other pollutants, making it a valuable tool in bioremediation efforts. Its ability to utilize one-carbon compounds also makes it a key player in the global carbon cycle, contributing to the breakdown and recycling of organic matter." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprocola Negative Anaerobe 310298 QRUU00000000.1 Bac0002595 Fervidobacterium changbaicum "Fervidobacterium changbaicum is a Gram-negative, rod-shaped bacterium known for its strict anaerobic metabolism and optimal growth at 45.0 °C. This thermophilic microbe thrives in high-temperature environments, which suggests its adaptation to geothermal habitats, potentially influencing its metabolic pathways and ecological interactions. As a non-spore-forming organism, F. changbaicum relies on its metabolic strategies to survive and proliferate in oxygen-depleted conditions, which may limit its distribution to specific niches where such conditions prevail.↵↵The physiological traits of F. changbaicum indicate its potential role in anaerobic biogeochemical cycles, particularly in thermophilic environments. Its ability to thrive at elevated temperatures may enhance the degradation of organic materials, contributing to nutrient cycling in its habitat. Understanding the metabolic capabilities of this organism could provide insights into its ecological significance and potential applications in biotechnology, such as in the development of biofuels or bioremediation strategies in hot environments." Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium changbaicum Gram-negative rod anaerobic 45 thermophilic non-spore-forming 310769 FNDL00000000.1 Bac0002596 Streptomyces yanglinensis "Streptomyces yanglinensis is a Gram-positive, rod-shaped bacterium known for its ability to form spores, characterizing it as a spore-forming organism. This species thrives in aerobic conditions, indicating a reliance on oxygen for growth and metabolic processes. Optimal growth occurs at a temperature of 32.0 °C, suggesting a preference for moderate thermal environments, typical of many members within the Streptomyces genus.↵↵As a member of the Streptomyces genus, S. yanglinensis likely plays a significant role in soil ecosystems, where its spore-forming ability enables it to survive in fluctuating environmental conditions. The capacity for sporulation not only aids in its resilience but may also facilitate the dissemination of genetic material within microbial communities. This trait underscores the potential for S. yanglinensis to contribute to biogeochemical cycling in its native habitat.↵↵Moreover, the aerobic nature of S. yanglinensis suggests its involvement in the degradation of organic matter, which can be essential for nutrient recycling in soil ecosystems. This ecological insight highlights the importance of S. yanglinensis and related species in maintaining soil health and supporting plant growth through their metabolic activities. Overall, S. yanglinensis exemplifies the complex interactions of microorganisms within terrestrial environments, particularly in the context of nutrient dynamics and microbial diversity." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila yanglinensis Gram-positive rod non-motile aerobic 32 mesophilic spore-forming 310779 FNVU00000000.1 Bac0002597 Alloyangia pacifica str. YSBP01 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Alloyangia Alloyangia pacifica 311180 NZ_CP022192.1 Bac0002598 Paraburkholderia terrae Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia terrae 311230 NZ_CP026113.1 Bac0002599 Allorhizobium ampelinum S4 "Allorhizobium ampelinum S4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This organism is adapted to diverse habitats, indicating its ecological versatility and potential to thrive in various environmental conditions.↵↵The Gram-negative nature of Allorhizobium ampelinum S4 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages such as resistance to certain antibiotics and the ability to interact with various substrates in its environment. As a rod-shaped bacterium, its morphology may contribute to its motility and colonization abilities, enhancing its ecological interactions.↵↵This organism's aerobic requirement indicates that it utilizes oxygen for its metabolic processes, which may influence its distribution in environments where oxygen is readily available. The ability to survive in multiple habitats highlights its potential role in various ecosystems, possibly contributing to nutrient cycling or plant interactions in soil environments.↵↵In summary, Allorhizobium ampelinum S4's adaptability to diverse habitats, coupled with its aerobic metabolism, suggests it may play a significant role in promoting soil health and plant growth through its interactions in the rhizosphere. Further studies could elucidate its specific contributions to ecosystem dynamics and its potential applications in agricultural microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Gillisella Gillisella ampelina Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living Singles 311402 NC_011988.1 Bac0002600 Rhizobium rhizogenes K84 "Rhizobium rhizogenes K84 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolism. This microbe is known to grow optimally at a temperature of 25.0°C, which suggests a preference for moderate environmental conditions typical of many soil habitats. ↵↵As a member of the Rhizobium genus, R. rhizogenes K84 is recognized for its role in forming symbiotic relationships with leguminous plants, contributing to nitrogen fixation processes that enhance soil fertility. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with plants and other soil microorganisms.↵↵The aerobic nature of R. rhizogenes K84 indicates that it requires oxygen for its metabolic processes, which aligns with its terrestrial habitat where oxygen is readily available. The ability to thrive in aerobic conditions may also play a role in its survival and competitive success in various soil environments.↵↵Overall, R. rhizogenes K84 exemplifies the complex interactions within soil ecosystems, where its nitrogen-fixing capabilities can significantly impact plant health and soil nutrient dynamics, highlighting its potential importance in sustainable agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella rhizogenes Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial 311403 NC_011990.1 Bac0002601 Roseibium album Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Roseibium Roseibium album 311410 CXWC00000000.1 Bac0002602 Dehalococcoides mccartyi VS "Dehalococcoides mccartyi VS is a Gram-negative, nonsporulating cocci that thrives in anaerobic aquatic environments, with an optimal growth temperature of 35.0°C. As a chemolithotroph, this microbe utilizes inorganic compounds as its primary energy source, which positions it uniquely in biogeochemical cycles, particularly in the context of bioremediation processes where halogenated compounds are present. ↵↵This organism typically exists as single cells, suggesting a potential adaptation to its habitat that allows for efficient nutrient acquisition in low-competition environments. The anaerobic requirement of D. mccartyi VS further emphasizes its role in anaerobic degradation pathways, particularly in the reductive dehalogenation of pollutants, which is critical for detoxifying environments contaminated with chlorinated solvents.↵↵Understanding the specific metabolic capabilities of D. mccartyi VS contributes to broader insights into microbial ecology and bioremediation strategies, highlighting the importance of anaerobic microorganisms in mitigating environmental pollution. The unique traits of this strain underscore its potential utility in biotechnological applications aimed at restoring contaminated aquatic ecosystems." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi Negative Cocci Yes 1 1 Anaerobic 35 Chemolithotroph Mesophilic Aquatic Free living Singles Nonsporulating 311424 NC_013552.1 Bac0002603 Trueperella bialowiezensis "Trueperella bialowiezensis is a spherical, non-spore-forming bacterium that thrives optimally at a temperature of 37.0°C. This microbe is characterized by its unique morphological shape, which distinguishes it from other members of its genus. The spherical form may influence its ecological niche, potentially affecting its interaction with host organisms and its environment. ↵↵The optimal growth temperature of 37.0°C suggests that Trueperella bialowiezensis is well-adapted to live in warm-blooded hosts, a trait that may facilitate its survival and proliferation under physiological conditions. Its inability to form spores indicates that it relies on other survival strategies in adverse conditions, which could include metabolic adaptations or symbiotic relationships with other microbial communities.↵↵Understanding the specific ecological role and biological interactions of Trueperella bialowiezensis in its native habitat remains a focus for further research. Given its growth temperature preference, it may play a significant role in the microbiomes of warm-blooded animals, contributing to the overall microbial diversity and potentially influencing the health and metabolic processes of its hosts. Consequently, the study of this bacterium could yield insights into microbial dynamics in warm-blooded organisms and the implications for host-microbe interactions." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Trueperella Trueperella bialowiezensis sphere non-motile 37 mesophilic non-spore-forming 312285 NZ_LR134476.1 Bac0002604 Pseudomonas entomophila str. 1257 "Pseudomonas entomophila strain 1257 is a Gram-negative, rod-shaped bacterium that occurs as single cells and exhibits aerobic metabolic characteristics, utilizing heterotrophic means for energy acquisition. This organism is capable of thriving in a variety of habitats, indicating its ecological versatility and adaptability to different environments. ↵↵As an aerobe, Pseudomonas entomophila strain 1257 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen levels are sufficient. Its heterotrophic lifestyle suggests that it relies on organic compounds as its primary energy source, potentially engaging in the decomposition of organic matter or establishing interactions with other microorganisms in its habitat.↵↵Notably, the ability of Pseudomonas entomophila strain 1257 to inhabit multiple environments underscores its potential role in nutrient cycling and ecological interactions within microbial communities. Its unique combination of traits positions it as a significant player in the microbiological landscape, possibly contributing to the dynamics of its ecosystems. Further studies may elucidate its specific interactions and contributions to ecological processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas oryziphila Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 312306 NZ_CP034338.1 Bac0002605 Jannaschia seosinensis "Jannaschia seosinensis is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0°C. This organism is characterized by its non-spore-forming nature, which suggests a reliance on favorable environmental conditions for survival rather than the ability to withstand extreme stressors typically associated with sporulation. ↵↵As a member of the microbial community, Jannaschia seosinensis may play a role in biogeochemical cycling, particularly in marine environments where it has been isolated. The specific temperature preference indicates its potential adaptation to moderately warm habitats, aligning with the thermal conditions often found in coastal waters. The aerobic requirement highlights its dependence on oxygen for metabolic processes, positioning it within ecosystems where oxygen-rich conditions prevail.↵↵The unique combination of traits exhibited by Jannaschia seosinensis suggests that it may contribute to the degradation of organic matter in its habitat, utilizing oxygen to metabolize available substrates. This metabolic capability could position it as an important player in nutrient cycling and energy flow within its ecological niche, underscoring the ecological significance of this microbe in maintaining the health and functionality of marine ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Jannaschia Jannaschia seosinensis Gram-negative rod aerobic 32 mesophilic non-spore-forming 313367 CYPR00000000.1 Bac0002606 Maribacter sp. HTCC2170 "Maribacter sp. (strain HTCC2170 / KCCM 42371) is a facultative aerobic, chemoorganotrophic Gram-negative bacterium isolated from surface waters at a depth of 10 meters using dilution-to-extinction culturing in the coastal area of Newport, Oregon. Maribacter sp. is predicted to contain carotenoid biosynthesis genes, including a beta-carotene hydroxylase, but the genome has no predicted photosynthetic genes or light-utilizing systems. It contains genes for nitrate reductase, nitrous oxide reductase, and nitric oxide reductase for denitrification, as well as sulfate reductase genes. Maribacter sp. possesses a set of genes coding for enzymes required to degrade high-molecularweight compounds and moves by gliding motility. (Adapted from PMID: 21037013). (HAMAP: MARSH)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter sp. HTCC2170 HTCC2170 Negative Bacilli Yes 1 2 Aerobic Heterotroph Mesophilic Aquatic Free living No 313603 NC_014472.1 Bac0002607 Nodularia spumigena CCY9414 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nodulariaceae Nodularia Nodularia spumigena 313624 NZ_CP007203.1 Bac0002608 Fulvimarina pelagi HTCC2506 "Fulvimarina pelagi HTCC2506 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is part of the diverse community of marine microorganisms and contributes to the complex biogeochemical processes in oceanic ecosystems. Its Gram-negative cell wall structure suggests a thin peptidoglycan layer surrounded by an outer membrane, characteristic of many marine bacteria, which may influence its interactions within the marine environment. ↵↵Fulvimarina pelagi HTCC2506 is indicative of the niche adaptations found among marine bacteria, particularly those involved in organic matter degradation and nutrient cycling. Its optimal growth temperature of 29.0°C aligns with typical conditions found in warmer oceanic waters, suggesting a potential role in the microbiological health of marine habitats in such thermal ranges. This organism exemplifies the diverse metabolic pathways that Gram-negative bacteria can employ to exploit available resources in the ocean, thereby playing a crucial role in sustaining marine food webs. Overall, the presence and activity of Fulvimarina pelagi HTCC2506 highlight the importance of microbial diversity in maintaining ecological balance in marine environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Fulvimarina Fulvimarina pelagi Gram-negative rod non-motile aerobic 29 mesophilic 314231 AATP00000000.1 Bac0002609 Parvularcula bermudensis HTCC2503 "Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) is an obligately aerobic, NaCl-requiring, chemoheterotrophic Gram-negative bacterium isolated from the Bermuda Atlantic Time Series Station in the western Sargasso Sea, Atlantic Ocean. The cells are weakly motile short rods (sometimes coccoid), 0.4-1.3 um in diameter and 0.6-1.8 um in length, that divided by binary fission. It has a short flagellum with a mean length of 2.4 um and a hook is clearly visible at one end of flagella detached from cells. The colonies on marine agar are very small (0.3-0.8 mm in diameter), yellowish-brown and very hard . The temperature range for growth is 10-37 degrees Celsius, with optimum growth at 30 degrees Celsius. No growth is observed at 4 or 44 degrees Celsius. Extended incubation of up to 40 days is required at 10 degrees before growth is observed. The pH range for growth is 6.0-9.0, with optimum growth at pH 8.0. No growth is detected at pH 5.5 or 9.5. P. bermudensis is moderately halophilic and shows good growth at NaCl concentrations of 0.75-25% (w/v) and optimal growth at 3.0% (w/v). It produced carotenoid pigments with spectral absorbance peaks at 321 and 465 nm, but no bacteriochlorophyll a. P. bermudensis reduces nitrate to nitrite, but not nitrite to N2, and utilizes some pentoses, hexoses, sugar alcohols, oligosaccharides and amino acids as sole carbon sources, but C1-C4 compounds and organic acids are not utilized as sole carbon sources. It is susceptible to chloramphenicol, carbenicillin, tetracycline, streptomycin, puromycin, erythromycin and rifampicin. However, it is resistant to nalidixic acid, kanamycin, vancomycin, ampicillin, benzylpenicillin, gentamicin and cycloheximide. (Adapted from PMID: 12892122). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Parvularculales Parvularculaceae Parvularcula Parvularcula bermudensis HTCC2503 Negative Bacilli No 1 2 Aerobic 30 Chemoheterotroph Mesophilic Aquatic Free living Nonsporulating No 314260 NC_014414.1 Bac0002610 Salipiger bermudensis HTCC2601 "Salipiger bermudensis HTCC2601 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, enabling it to thrive in both aerobic and anaerobic environments. This microbe does not form spores, which may influence its ecological adaptability and survival strategies. The optimal growth temperature for S. bermudensis HTCC2601 is approximately 32.0°C, suggesting it is well adapted to mesophilic conditions typically found in various aquatic environments.↵↵The ability to utilize both aerobic and anaerobic respiration allows S. bermudensis HTCC2601 to exploit a diverse range of substrates, potentially enhancing its ecological versatility and niche occupancy. Its Gram-negative cell wall structure may confer certain advantages in terms of resistance to environmental stressors, such as changes in osmotic pressure or exposure to antimicrobial agents. Understanding the physiological traits of S. bermudensis HTCC2601 can provide insights into its role in biogeochemical cycles, particularly in marine ecosystems where temperature and oxygen levels fluctuate.↵↵Overall, Salipiger bermudensis HTCC2601 exemplifies the adaptability of certain microbial species to varying environmental conditions, and its metabolic capabilities may play a significant role in nutrient cycling within its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger bermudensis Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic non-spore-forming 314265 AATQ00000000.1 Bac0002611 Nitrosococcus oceani C-27 "Nitrosococcus oceani C-27 is a Gram-negative coccoid bacterium that exhibits a distinctive cell arrangement, typically found in pairs or as single cells. This microorganism is classified as a chemolithotrophic autotroph, indicating that it can utilize inorganic compounds as energy sources, specifically nitrifying ammonium to nitrite in its metabolic processes. Its habitat is primarily aquatic, where it thrives in oxygen-rich environments, as it requires aerobic conditions for growth.↵↵The ability of Nitrosococcus oceani C-27 to oxidize ammonium is crucial for the nitrogen cycle, particularly in marine ecosystems. By converting ammonium, a product of organic matter decomposition, into nitrite, this microbe plays a significant role in facilitating the availability of nitrogen for other organisms within its habitat. This activity not only contributes to nutrient cycling but also impacts the overall productivity and health of aquatic environments. The specific interactions of Nitrosococcus oceani C-27 with its surroundings highlight the importance of such microorganisms in maintaining ecological balance and influencing biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani Negative Cocci Yes 1 2 Aerobe Chemolithotroph - Autotroph Mesophilic Aquatic Free living Pairs - Singles 314279 JPGN00000000.1 Bac0002612 Psychromonas sp. CNPT3 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas sp. CNPT3 314282 NC_020802.1 Bac0002613 Xanthomonas campestris pv. campestris str. 8004 "The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.Xanthomonas campestris pv. campestris causes black rot, which affects crucifers such as Brassica and Arabidopsis. Symptoms include marginal leaf chlorosis and darkening of vascular tissue, accompanied by extensive wilting and necrosis. This bacterium is grown commercially to produce the exopolysaccharide xanthan gum, which is used to control viscosity and as a stabilizing agent in many industries. (HAMAP: XANCP)" Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas campestris 8004 Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living No 314565 NC_007086.1 Bac0002614 Pseudoxanthomonas suwonensis str. J1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas suwonensis 314722 NZ_CP011144.1 Bac0002615 Pseudoxanthomonas suwonensis Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas suwonensis 314722 QFNC00000000.1 Bac0002616 Streptococcus gallolyticus "Streptococcus gallolyticus is a Gram-positive, spherical-shaped bacterium that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites of humans, including the gastrointestinal tract, bloodstream, and liver, across different species. As a facultative anaerobe, Streptococcus gallolyticus can survive in both aerobic and anaerobic environments, adapting its metabolic processes to the available oxygen levels. The Gram-positive cell wall of Streptococcus gallolyticus provides it with resistance to certain environmental stresses, while its spherical shape allows for efficient nutrient uptake and cell division. As a mesophile, it grows best in temperatures between 20-45°C, making it well-suited to the human body's temperature range. As a chemoheterotroph, Streptococcus gallolyticus relies on organic compounds for energy and carbon, utilizing a variety of sugars and amino acids for growth. Its ability to inhabit multiple body sites is attributed to its facultative anaerobic nature, allowing it to thrive in areas with varying oxygen levels. This adaptability contributes to its role in certain diseases, such as colorectal cancer and endocarditis. Streptococcus gallolyticus has been found to have a strong association with colorectal cancer, with studies suggesting that its presence in the gut may contribute to the development of this disease. Additionally, its unique genetic makeup has led to the discovery of novel virulence factors and potential therapeutic targets, making it a significant focus of research in the field of microbiology and disease prevention." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gallolyticus Positive Cocci No 1 1 Anaerobic Mesophilic HostAssociated Free living Chains - Pairs 315405 QVHT00000000.1 Bac0002617 Bacillus cytotoxicus NVH 391-98 "Bacillus cytotoxicus NVH 391-98 is a thermophilic, chemoheterotrophic bacterium that produces energy through fermentation, is Gram-positive, rod-shaped, and can be found in various environments, especially soil and decaying organic matter; it thrives as a facultative anaerobe. This microbe exhibits a remarkable adaptability to high temperatures, typically favoring growth in environments ranging from moderate to high temperatures, making it a subject of interest in studies related to thermophilic organisms. As a chemoheterotroph, Bacillus cytotoxicus NVH 391-98 derives its energy from organic compounds, which it metabolizes to sustain its growth and cellular functions. This metabolic versatility allows it to thrive in diverse ecological niches, where it breaks down complex organic substrates. Being Gram-positive, it retains the crystal violet stain used in the Gram staining procedure, which indicates a thick peptidoglycan layer in its cell wall. This characteristic is significant for its identification and classification within the Bacillus genus. The rod-shaped morphology of Bacillus cytotoxicus NVH 391-98 is typical of many bacteria in the Bacillus family, contributing to its ability to form spores under adverse conditions, a feature that enhances survival and dispersal. As a facultative anaerobe, it can grow in both aerobic and anaerobic environments, allowing for greater ecological flexibility and resilience in fluctuating conditions. This microbe is noteworthy for its production of cytotoxic compounds, which can have implications for food safety and public health, particularly in relation to foodborne illnesses. Its potential use in biotechnological applications, including bioremediation and the production of bioactive compounds, highlights its significance in environmental and industrial microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cytotoxicus NVH 391-98 Positive Rod Yes Aerobe Mesophilic Terrestrial Yes 315749 NC_009674.1 Bac0002618 Geotalea daltonii FRC-32 "Geotalea daltonii FRC-32 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a chemolithotroph, utilizing inorganic compounds as its energy source. This organism thrives in anaerobic environments, indicating its inability to grow in the presence of oxygen, which suggests a specialized metabolic pathway adapted to such conditions. ↵↵The habitat of Geotalea daltonii FRC-32 is diverse, although specific ecological contexts are not detailed; its capacity for chemolithotrophy points to a potential role in biogeochemical cycles, particularly in environments rich in inorganic substrates. This metabolic versatility may enable G. daltonii FRC-32 to contribute to nutrient cycling in anaerobic ecosystems, such as sediments or subsurface environments.↵↵Understanding the physiological traits of Geotalea daltonii FRC-32 can shed light on the ecological roles of anaerobic microorganisms in various habitats, especially in nutrient-poor environments where reliance on inorganic compounds for energy is crucial for survival. This highlights the importance of studying such microbes to gain insights into their contributions to ecosystem dynamics and their potential applications in bioremediation or bioenergy production." Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea daltonii Negative Rod No 1 2 Anaerobe Chemolithotroph Mesophilic Multiple Free living Singles 316067 NC_011979.1 Bac0002619 Xanthomonas campestris pv. vesicatoria str. 85-10 "The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.Xanthomonas campestris pv. campestris causes black rot, which affects crucifers such as Brassica and Arabidopsis. Symptoms include marginal leaf chlorosis and darkening of vascular tissue, accompanied by extensive wilting and necrosis. This bacterium is grown commercially to produce the exopolysaccharide xanthan gum, which is used to control viscosity and as a stabilizing agent in many industries. (HAMAP: XANCP)" Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas euvesicatoria Oct-85 Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living No 316273 NC_007505.1 Bac0002620 Aliivibrio salmonicida LFI1238 "Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio salmonicida LFI1238 Negative Rod No 2 Facultative Heterotroph Psychrophilic Aquatic Free living Cod Nonsporulating No 316275 NC_011311.1 Bac0002621 Synechococcus sp. CC9902 "Marine unicellular cyanobacteria of the synechococcus group occupy an important position at the base of the marine food chain. They are abundant in the world's oceans and as a result are one of the most numerous genomes on earth. They have the ability to acquire major nutrients and trace metals from the submicromolar concentrations found in the oligotrophic open seas and their light-harvesting apparatus is uniquely adapted to the spectral quality of light in the ocean.A third of the open ocean isolates of synechococcus possess a unique type of swimming motility not seen in any other type of microorganism, they propel themselves through seawater at speeds of up to 25 mm/sec despite their lack of external propelling devices. They do not use their motility to respond to light gradients, but instead to respond to extremely small gradients of nitrogenous compounds.Synechococcus sp. strain WH8102 is a motile strain that can be grown in both natural and artificial seawater liquid media as well as on plates and is amenable to biochemical and genetic manipulation. The availability of the complete sequence of the genome of synechococcus WH8102 will provide insights not only into the unique adaptations of this cyanobacterial group to the marine environment, including mechanisms of nutrient and metal transport, chemotaxis, motility, and viral interactions but also into what factors might be ultimately important in controlling primary productivity in the oceans.Marine synechococcus spp. coexist with the other abundant unicellular marine cyanobacterial group, prochlorococcus . A major difference between the synechococcus and prochlorococcus groups lies in their light-harvesting apparatus, with synechococcus utilizing chlorophyll A, and prochlorococcus relying on divinyl chlorophylls A and B. A comparative analysis of their genomes should allow insights not only into the evolution of light-harvesting complexes, but also into cyanobacterial diversification in the oceans, including adaptations to different marine niches.Marine unicellular cyanobacteria are responsible for an estimated 20-40% of chlorophyll biomass and carbon fixation in the oceans.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CC9902 CC9902 Negative Cocci Yes 1 2 Facultative Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Singles No 316279 NC_007513.1 Bac0002622 Streptomyces noursei ATCC 11455 "Streptomyces noursei ATCC 11455 is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its filamentous structure and ability to produce a wide array of bioactive compounds. As a member of this genus, S. noursei exhibits characteristic features such as a complex life cycle that includes the formation of mycelium and spore production. ↵↵This strain has garnered attention due to its role in natural product biosynthesis, particularly in the production of antibiotics and other secondary metabolites. The metabolic capabilities of S. noursei contribute significantly to its ecological niche, allowing it to thrive in diverse environments where it plays a crucial role in nutrient cycling and the decomposition of organic matter.↵↵S. noursei's unique ability to produce bioactive compounds, including potential pharmaceutical agents, underscores its importance in biotechnological applications, particularly in drug discovery and development. The filamentous growth form and the efficiency of spore formation enhance its survival and adaptability in various habitats, suggesting a robust ecological strategy for colonization and resource utilization. Understanding the traits and capabilities of S. noursei can provide insights into its potential applications in biotechnology and environmental microbiology." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces noursei Positive 316284 NZ_CP011533.1 Bac0002623 Escherichia coli ETEC H10407 "Escherichia coli ETEC H10407 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is part of the Enterotoxigenic E. coli (ETEC) pathotype, which is often associated with gastrointestinal infections in humans. E. coli H10407 thrives optimally at 37°C, reflecting its adaptation to the warm-blooded hosts it inhabits. As a facultative anaerobe, it possesses the ability to grow in both aerobic and anaerobic environments, which aids its survival within the diverse conditions found in the intestinal tract.↵↵This strain's habitat is primarily host-associated, indicating its reliance on living hosts for sustenance and propagation. The ability to exist in pairs or as singles may facilitate its colonization and interaction with host tissues, although specific mechanisms of attachment and virulence are not detailed in the provided traits. ↵↵Understanding the characteristics of E. coli ETEC H10407 can offer insights into its ecological role within the intestinal microbiome and its potential impact on host health. Its facultative anaerobic nature suggests a versatile metabolic capacity, allowing it to adapt to varying oxygen levels and compete with other microbial inhabitants in the gut environment. Such adaptability may contribute to its persistence and the dynamics of microbial communities in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 316401 NC_017724.1 Bac0002624 Enterococcus canintestini Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus canintestini 317010 JXKG00000000.1 Bac0002625 Xanthomonas phaseoli pv. phaseoli Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas phaseoli 317013 NZ_CP012063.1 Bac0002626 Nesterenkonia jeotgali str. CD08_7 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia jeotgali 317018 LQBM00000000.1 Bac0002627 Prochlorothrix hollandica PCC 9006 = CALU 1027 Bacillati Cyanobacteriota Cyanophyceae Prochlorotrichales Prochlorotrichaceae Prochlorothrix Prochlorothrix hollandica 317619 AJTX00000000.2 Bac0002628 Sphingopyxis alaskensis RB2256 "S. alaskensis is an obligate aerobe isolated as one of the most numerically abundant bacteria from Alaskan waters over a period spanning ten years, demonstrating it is one of the most common culturable inhabitants from these environments. Its capacity to thrive in oligotrophic environments at 4-10 degrees Celsius is linked to unique genetic and physiological properties which are fundamentally different from those of the well studied bacteria such as Escherichia coli. It has a constant ultramicro-size (its volume is 0.1 um 3), irrespective of whether it is growing or starved, that provides it with a mechanism for avoiding predation, and a high surface to volume ratio to enhance nutrient uptake. This is coupled with the ability to utilize low concentrations of nutrients using high affinity, broad specificity uptake systems ( e.g. highest reported rates of alanine transport for any bacterium) and the ability to simultaneously take up mixed substrates. It is likely to be an important contributor in terms of biomass and nutrient cycling in marine environments. Ultramicrobacteria (nanobacteria), such as S. alaskensis, have been reported in a range of aquatic, terrestrial and clinical samples, and in fossils; many of which are controversial. The reports have raised questions about the minimum size of a free-living cell. The astrobiology community has been particularly interested, as the minimum cell-size has important implications for cellular evolution and for the search for extraterrestrial life. S. alaskensis is a useful model for these purposes, as it has been shown, for example, to achieve maximum rates of growth with 200 ribosomes per cell. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis alaskensis RB2256 Negative No 2 Aerobe Oligotroph - Heterotroph Mesophilic Aquatic Free living Nonsporulating No 317655 NC_008048.1 Bac0002629 Nostoc sp. PCC 7107 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. PCC 7107 317936 NC_019676.1 Bac0002630 Shewanella denitrificans OS217 str. OS-217 "Shewanella denitrificans OS217 str. OS-217 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe is a heterotroph, utilizing organic compounds as its energy source, and is capable of thriving in aquatic environments. Its optimal growth temperature is approximately 20.0 degrees Celsius, indicating a preference for cooler conditions often found in natural water bodies.↵↵As a facultative anaerobe, S. denitrificans OS217 str. OS-217 can adapt to varying oxygen levels, allowing it to survive both in the presence and absence of oxygen. This flexibility in oxygen utilization may facilitate its growth in diverse aquatic ecosystems that experience fluctuating oxygen conditions, such as estuaries or sediments where oxygen gradients are present.↵↵Unique to its ecological role, S. denitrificans OS217 str. OS-217 contributes to biogeochemical cycles, particularly in the denitrification process, where it can reduce nitrate to nitrogen gas under anaerobic conditions. This capability not only highlights its potential importance in nitrogen cycling within aquatic habitats but also suggests its relevance in bioremediation efforts aimed at mitigating nitrogen pollution in freshwater and marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans Negative Rod Yes 1 2 Facultative 20 Heterotroph Mesophilic Aquatic Free living Pairs - Singles 318161 NC_007954.1 Bac0002631 Mycobacterium rufum str. JS14 "Mycobacterium rufum strain JS14 is a Gram-positive, rod-shaped bacterium that exhibits aerobic respiration and thrives optimally at a temperature of 29.0 °C. This species belongs to the genus Mycobacterium, which is known for its complex cell wall structure and distinctive lipid composition, features that contribute to its environmental resilience. The aerobic nature of M. rufum str. JS14 indicates that it requires oxygen for its metabolic processes, which may influence its habitat preferences and ecological interactions.↵↵The rod-shaped morphology of this bacterium is characteristic of many species within the Mycobacterium genus, allowing it to adopt a range of growth forms and possibly facilitating its adaptation to various ecological niches. The optimal growth temperature of 29.0 °C suggests a preference for mesophilic environments, which may include soil or decaying organic matter, where it could play a role in nutrient cycling.↵↵Understanding the growth characteristics of M. rufum str. JS14 can provide insights into its potential roles in microbial communities, particularly in environments that support aerobic microbial activity. Given its optimal temperature, this strain may be particularly suited for environments that experience moderate temperatures, contributing to the degradation of organic materials and influencing soil health. Further exploration of its ecological interactions could reveal important functions within its native habitat." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium rufum Gram-positive rod non-motile aerobic 29 mesophilic 318424 JROA00000000.1 Bac0002632 Photobacterium kishitanii Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium kishitanii 318456 PYPA00000000.1 Bac0002633 Gluconobacter albidus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter albidus 318683 NZ_CP014689.1 Bac0002634 Bradyrhizobium sp. WSM471 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. WSM471 319017 AHLW00000000.1 Bac0002635 Pelodictyon luteolum DSM 273 "Pelodictyon luteolum DSM 273 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an anaerobe. This microbe is adaptable to various habitats, suggesting a level of ecological versatility that may allow it to occupy diverse environments. ↵↵The rod shape and anaerobic nature indicate that Pelodictyon luteolum DSM 273 likely engages in fermentation or other anaerobic metabolic processes, which could be significant in biogeochemical cycles, particularly in low-oxygen environments. The ability to survive and proliferate in multiple habitats may facilitate its role in microbial communities, where it could contribute to organic matter decomposition or other interactions within anaerobic ecosystems.↵↵Understanding the specific metabolic pathways employed by Pelodictyon luteolum DSM 273 in its various habitats could reveal insights into its ecological functions, particularly in anaerobic processes such as sulfate reduction or nitrogen cycling. This adaptability underscores the importance of studying such microorganisms, as they can play pivotal roles in maintaining ecological balance in their respective environments." Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum Negative Rod No Anaerobe 25 Mesophilic Multiple 319225 NC_007512.1 Bac0002636 Brevibacillus sp. WF146 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus sp. WF146 319501 NZ_CP109943.1 Bac0002637 Pediococcus cellicola "Pediococcus cellicola is a Gram-positive, spherical bacterium that thrives at an optimal temperature of 32.0°C. As a member of the Pediococcus genus, P. cellicola is characterized by its non-spore-forming nature, which distinguishes it from many other bacterial taxa that utilize sporulation as a survival strategy. ↵↵The spherical morphology of P. cellicola contributes to its distinctive arrangement during cell division, typically resulting in pairs or tetrads that can be observed under a microscope. This trait may play a role in its interactions within various environments, potentially influencing its ecological niche and contributions to microbial communities.↵↵While specific ecological roles of P. cellicola have not been elucidated in detail, its optimal growth temperature suggests a preference for mesophilic conditions, which are commonly found in a range of environments, including fermented foods and certain plant-associated habitats. ↵↵The metabolic pathways and physiological capabilities of P. cellicola have implications for its potential use in biotechnological applications, particularly in fermentation processes, where its growth characteristics could be harnessed for food preservation or flavor enhancement. Overall, the unique combination of its Gram-positive structure, non-sporulating nature, and optimal growth temperature positions P. cellicola as an intriguing subject for further investigation within microbial ecology and industrial microbiology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus cellicola Gram-positive sphere non-motile 32 mesophilic non-spore-forming 319652 JQBR00000000.1 Bac0002638 Pediococcus ethanolidurans Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus ethanolidurans microaerophile 319653 JQBY00000000.1 Bac0002639 Streptococcus pyogenes MGAS6180 "Streptococcus pyogenes MGAS6180 is a Gram-positive, cocci-shaped bacterium that thrives in mesophilic temperatures (20-45°C). This strain is classified as a chemoheterotroph, relying on organic compounds for energy and carbon. It commonly colonizes various body sites, including the throat, skin, and, in some instances, the respiratory tract, making it a versatile organism in human microbiota. Streptococcus pyogenes MGAS6180 is a facultative anaerobe, capable of growth in both aerobic and anaerobic environments, although it prefers those with oxygen. As a member of the Streptococcus genus, this bacterium is known for its pathogenicity and is the causative agent of several diseases ranging from mild conditions, such as pharyngitis (strep throat), to severe infections like necrotizing fasciitis and streptococcal toxic shock syndrome. Its ability to adapt to different body sites enables it to evade the immune response and establish infections. The bacterium's cell wall contains a unique composition of carbohydrates, including the M protein, which is crucial for its virulence and enhances its ability to adhere to host tissues and resist phagocytosis. In addition to its pathogenic capabilities, Streptococcus pyogenes MGAS6180 has garnered attention in research for its ability to produce various virulence factors, including streptolysins and hyaluronidase, which contribute to tissue damage and facilitate the spread of infection within the host. The strain is also of particular interest in the study of bacterial genetics and gene regulation, as it displays remarkable genetic diversity, allowing for the exploration of its evolutionary adaptations and virulence mechanisms." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes MGAS6180 Positive Cocci No 1 1 Facultative anaerobe 35 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 319701 NC_007296.2 Bac0002640 Mycobacteroides abscessus subsp. bolletii Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus 319705 FSCP00000000.1 Bac0002641 Mycolicibacterium aubagnense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium aubagnense 319707 POTN00000000.1 Bac0002642 Deinococcus geothermalis DSM 11300 "Deinococcus geothermalis is an extremely radiation resistant, moderately thermophilic bacterium closely related to the mesophilic Deinococcus radiodurans. D. geothermalis is remarkable not only for its extreme resistance to ionizing gamma irradiation, but also for its ability to grow at temperatures as high as 55 degrees C and in the presence of chronic irradiation. The organism was isolated from thermal springs at Agnano, Naples, Italy. D. geothermalis belongs to the bacterial family Deinococcaceae, currently comprised of eight distinct nonpathogenic radiation resistant species, of which Deinococcus radiodurans strain R1 is the most characterized. Characteristics support the prospective development of this thermophilic radiophile for bioremediation of radioactive mixed waste environments. Like D. radiodurans, D. geothermalis accumulates high intracellular Mn(II) concentrations, believed to be important to its extreme resistance phenotypes. (EBI Integr8)" Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis DSM11300 Positive Cocci No 1 1 Aerobe 47 Mesophilic Aquatic Free living Pairs - Tetrads non-spore-forming No 319795 NC_009939.1 Bac0002643 Staphylococcus croceilyticus Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus croceilyticus 319942 PPRD00000000.1 Bac0002644 Burkholderia pseudomallei 1710a "Burkholderia pseudomallei 1710a is a rod-shaped, Gram-negative bacterium that thrives in terrestrial environments and exhibits aerobic respiration. This species is part of a genus known for its diverse ecological adaptability and its presence in various soil types, which suggests a potential role in soil nutrient cycling and interactions with other soil microbiota.↵↵As an aerobic organism, B. pseudomallei 1710a requires oxygen for its metabolic processes, which may influence its distribution and competitive dynamics within terrestrial ecosystems. The rod shape of the bacterium may also confer advantages in motility and nutrient acquisition in its natural habitat. ↵↵Understanding B. pseudomallei 1710a within the context of its terrestrial habitat provides insights into its ecological interactions and potential roles in biogeochemical cycles. Its ability to survive and thrive in aerobic conditions highlights the importance of oxygen availability in shaping microbial communities in soil environments. Additionally, the study of this specific strain can contribute to a broader understanding of the physiological adaptations that enable bacteria to occupy diverse ecological niches." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 320371 NZ_CM000833.1 Bac0002645 Burkholderia pseudomallei 668 "Burkholderia pseudomallei is an opportunistic pathogen and a common cause of human pneumonia and fatal bacteremias in endemic areas. Clinical manifestations of B. pseudomallei infection, a disease known as melioidosis, vary greatly from an asymptomatic state, to benign pneumonitis, to acute or chronic pneumonia, or to overwhelming septicemia. Treatment of melioidosis can involve up to nine months of antibiotic therapy, and relapse of the disease is common. The latency period of the organism may vary from two days to 26 years. It is endemic in Southeast Asia and northern Australia, but has also been found in Africa, the Middle East, Europe, Central and South America. Besides humans, melioidosis can affect animals such as sheep, goats, horses, swine, dogs and cats. Transmission occurs by contact with contaminated soil and water, through skin abrasions or inhalation of dust. In northeastern Thailand, B.pseudomallei accounts for 20% of bacterial septicaemias (adapted from http://www.cdc.gov/ncidod/dbmd/diseaseinfo/melioidosis_g.htm). Strain 668 will be used for comparative genomics. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei 668 Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living Homo sapiens Yes 320373 NC_009074.1 Bac0002646 Burkholderia pseudomallei S13 "Burkholderia pseudomallei S13 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic characteristics. This organism is a member of the Burkholderia genus, which is known for its diverse ecological roles and adaptability to various habitats. ↵↵As an aerobic microbe, B. pseudomallei S13 requires oxygen for its growth and metabolic processes, positioning it within environments where oxygen is readily available. Its Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, contributes to its resilience in different terrestrial settings.↵↵Given its terrestrial habitat, B. pseudomallei S13 may play a role in soil ecosystems, possibly influencing nutrient cycling and interactions with other microbial communities. The ability to inhabit diverse ecological niches suggests that this strain may possess unique adaptations that facilitate its survival in fluctuating environmental conditions. Further exploration of its ecological role could provide insights into the functional dynamics of soil microbiomes and the interactions between pathogenic and non-pathogenic strains within the Burkholderia genus." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 320374 AAHW00000000.2 Bac0002647 Neoasaia chiangmaiensis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Neoasaia Neoasaia chiangmaiensis 320497 NZ_CP014691.1 Bac0002648 Rhodovulum marinum str. DSM 18063 "Rhodovulum marinum str. DSM 18063 is a Gram-negative, ovoid-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 29.0°C. This organism is characterized by its non-spore-forming nature, indicating a reliance on other survival strategies under varying environmental conditions. ↵↵As a member of the Rhodovulum genus, this strain may play a role in marine ecosystems, particularly in anaerobic niches where organic matter is decomposed. Its adaptations to anaerobic environments suggest potential involvement in biogeochemical cycles, particularly those related to sulfur or carbon, although specific metabolic pathways have not been detailed in the provided traits. ↵↵The preference for moderate temperatures and the inability to form spores may indicate that Rhodovulum marinum str. DSM 18063 is well-suited for stable, warm aquatic environments, potentially influencing nutrient cycling and energy flow within its habitat. Further studies could elucidate the ecological roles and interactions of this organism within marine microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum marinum Gram-negative ovoid non-motile anaerobic 29 mesophilic non-spore-forming 320662 SLXP00000000.1 Bac0002649 Maribacter dokdonensis "Maribacter dokdonensis is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements and inability to form spores. This microbe thrives optimally at a temperature of 29.0°C, which suggests a preference for moderately warm environments. As a member of the genus Maribacter, it shares common traits with other marine bacteria, indicating a potential ecological niche within marine ecosystems.↵↵The Gram-negative nature of M. dokdonensis implies the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in aquatic habitats. The aerobic lifestyle of this bacterium suggests that it relies on oxygen for energy production, likely facilitating its role in biogeochemical cycles within its environment. ↵↵Given its optimal growth temperature, M. dokdonensis may be particularly well-suited to marine environments influenced by temperate conditions. This adaptability to specific thermal niches could also indicate a potential role in the degradation of organic materials in oceanic waters, thus contributing to nutrient cycling. Overall, the traits of Maribacter dokdonensis provide insights into its ecological role as a marine bacterium, underscoring its importance in maintaining the health and balance of marine ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter dokdonensis Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 320912 FNTB00000000.1 Bac0002650 Shimia marina "Shimia marina is a Gram-negative, rod-shaped bacterium that is non-spore-forming and thrives in aerobic conditions, with an optimal growth temperature of 32.0°C. This microbe's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions within various environments. ↵↵The rod shape of Shimia marina is typical of many bacteria, which can play a role in its motility and surface attachment mechanisms. The requirement for oxygen suggests that it may be involved in aerobic metabolic processes, potentially utilizing oxygen as a terminal electron acceptor in respiration. ↵↵The specific temperature preference of 32.0°C may indicate that Shimia marina is adapted to moderately warm environments, which could be reflective of its isolation from marine habitats where temperatures fluctuate within this range. This adaptability to specific thermal conditions may suggest ecological roles in nutrient cycling and organic matter degradation in its native habitat.↵↵Overall, the physiological traits of Shimia marina suggest that it might occupy a niche in marine ecosystems where aerobic decomposition processes are crucial, contributing to the overall health and balance of microbial communities in such environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia marina Gram-negative rod aerobic 32 mesophilic non-spore-forming 321267 CYPW00000000.1 Bac0002651 Tenacibaculum litoreum str. HSC 22 "Tenacibaculum litoreum strain HSC 22 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This organism has an optimal growth temperature of 37.0°C, suggesting it may thrive in environments that approximate warm, temperate conditions. ↵↵As a member of the Tenacibaculum genus, T. litoreum is likely adapted to marine environments, which is consistent with the ecological niches typically associated with this group of bacteria. While specific ecological roles for strain HSC 22 are not delineated, members of the Tenacibaculum genus are often associated with aquatic ecosystems, where they can play crucial roles in nutrient cycling and interactions with other microbial communities. ↵↵The aerobic nature of T. litoreum indicates that it requires oxygen for its metabolic processes, which may influence its distribution in oxygen-rich environments, such as the surface layers of marine sediments or water columns. Understanding the traits of T. litoreum str. HSC 22 can provide insights into its potential ecological functions and adaptations within its habitat, particularly regarding its interactions with other marine microorganisms and its role in biogeochemical cycles." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum singaporense Gram-negative rod motile aerobic 37 mesophilic non-spore-forming 321269 RSFU00000000.1 Bac0002652 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 "Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 is a Gram-negative, rod-shaped bacterium that thrives in a temperature range of 35-37°C, making it a mesophilic organism. This microbe is classified as a chemoheterotroph, deriving its energy from organic compounds, and is known to be a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments.Being a member of the Salmonella enterica species, Choleraesuis has a significant role in human and animal health, as it is primarily associated with gastrointestinal infections. This bacterium can inhabit various body sites, including the intestines of warm-blooded animals, particularly pigs, which serve as common reservoirs. It can also be found in the environment, including contaminated water and soil, contributing to its transmission through food sources. The pathogenicity of Salmonella enterica serovar Choleraesuis is of particular concern; it is known to cause serious infections, leading to symptoms such as diarrhea, fever, and abdominal cramps. In severe cases, it can result in bloodstream infections, especially in immunocompromised individuals. This strain has shown resilience to a range of antimicrobial treatments, posing significant challenges in public health and veterinary contexts.Furthermore, recent studies have highlighted the potential of Choleraesuis to adapt to various host conditions, suggesting a complex interaction with the host's immune response. Understanding its genetic makeup and virulence factors is crucial for developing effective vaccines and treatments against infections it causes, making it a subject of ongoing research in microbiology and infectious disease management." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 321314 NC_006905.1 Bac0002653 Synechococcus sp. JA-3-3Ab str. A-Prime "Synechococcus sp. JA-3-3Ab str. A-Prime is a Gram-negative, rod-shaped cyanobacterium that typically exists as single cells. This organism is a photoautotroph, utilizing light as its primary energy source to drive photosynthesis, enabling it to thrive in specialized habitats. As a facultative organism, it exhibits flexibility in its oxygen requirements, allowing it to adapt to varying environmental conditions where oxygen levels may fluctuate. ↵↵The ability of Synechococcus sp. JA-3-3Ab str. A-Prime to engage in photosynthesis positions it as a critical player in the carbon cycle within its ecological niche, potentially influencing local microbial communities and contributing to primary production. Its specialized habitat suggests adaptations that may allow it to occupy unique ecological roles, possibly in environments where other photosynthetic organisms might not be as competitive. This adaptability highlights the significance of Synechococcus sp. JA-3-3Ab str. A-Prime in understanding microbial dynamics and energy flow within specific ecosystems." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. JA-3-3Ab Negative Rod Yes 1 2 Facultative Photosynthetic - Photoautotroph Thermophilic Specialized Free living Singles 321327 NC_007775.1 Bac0002654 Pseudomonas vranovensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas vranovensis 321661 MOAM00000000.1 Bac0002655 Pseudomonas moraviensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas moraviensis 321662 RHRT00000000.1 Bac0002656 Halarsenatibacter silvermanii Bacillati Bacillota Clostridia Halanaerobiales Halarsenatibacteraceae Halarsenatibacter Halarsenatibacter silvermanii anaerobic 321763 FNGO00000000.1 Bac0002657 Pseudomonas simiae str. WCS417 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas simiae 321846 NZ_CP007637.1 Bac0002658 Pseudomonas simiae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas simiae 321846 FOKB00000000.1 Bac0002659 Lacticaseibacillus paracasei ATCC 334 "Lacticaseibacillus paracasei ATCC 334 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This microbe exhibits optimal growth at a temperature of 30.0°C, indicating a preference for moderate environmental conditions. Lacticaseibacillus paracasei is known to inhabit a variety of ecological niches, highlighting its adaptability and potential significance in diverse microbial communities.↵↵As a facultative anaerobe, Lacticaseibacillus paracasei has the capability to survive and grow in both aerobic and anaerobic environments, which allows it to thrive in different habitats, including fermented foods and the gastrointestinal tract of mammals. This versatility may facilitate its role in fermentation processes, contributing to the production of lactic acid and other metabolites beneficial for food preservation and gut health.↵↵The ecological adaptability of Lacticaseibacillus paracasei ATCC 334 underscores its potential importance in both industrial applications, such as dairy fermentation, and its role in the human microbiome, where it may contribute to gut homeostasis. Further understanding of its metabolic pathways and interactions within microbial communities could provide insights into its functional roles in health and food systems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 321967 NC_008526.1 Bac0002660 Pseudoduganella albidiflava Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Pseudoduganella Pseudoduganella albidiflava 321983 NZ_CP036401.1 Bac0002661 Pseudoduganella plicata str. DSM 17505 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Pseudoduganella Pseudoduganella plicata 321984 NZ_CP038026.1 Bac0002662 Aster yellows witches'-broom phytoplasma AYWB "Phytoplasmas have diverged from Gram-positive bacteria, and belong to the genus Phytoplasma within the class Mollicutes. They are plant pathogens, causing severe symptoms such as stunting, phyllody, witches broom, yellowing, and yield losses in over 300 economically important plant species worldwide. Transmission of phytoplasmas to plants occurs when insects feed from plant phloem. The bacteria are introduced into plant phloem with insect saliva. In plants, phytoplasmas remain restricted to the phloem tissue where they systemically spread throughout the plant. They are among the smallest self-replicating organisms known, and are characterized by a small genome with a low G+C content, and a lack of a firm cell wall. (EBI Integr8)" Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Aster yellows witches'-broom phytoplasma AYWB Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated No 322098 NC_007717.1 Bac0002663 Azotobacter vinelandii DJ "Azotobacter vinelandii is a free-living, obligately aerobic, nitrogen-fixing gamma-proteobacteria. It is found in soils world-wide, with features of nitrogen and energy metabolism relevant to agriculture. In response to carbon starvation it differentiates to form cysts that are impervious to chemical and physical challenge. Studies have been focused on its ability to fix diatmospheric nitrogen under free-living conditions, a process that occurs in the presence of oxygen levels that typically inactivate the nitrogenase enzyme. Unusually it encodes three distinct nitrogenase systems, the molybdenum, vanadium and iron-only nitrogenases, expression of which is differentially regulated by metal availability from the medium. Diazotrophic growth under aerobic conditions is possible because it adjusts oxygen-consumption rates to help maintain low levels of cytoplasmic oxygen, a phenomenon called respiratory protection. It is able to produce alginate, a polymer that further protects the organism from excess exogenous oxygen, and it has multiple duplications of alginate modification genes, which may alter alginate composition in response to oxygen availability. Other oxygen-sensitive enzymes have also been identified in the genome (carbon monoxide dehydrogenase, a formate dehydrogenase, and another hydrogenase). Genome annotation was done by supervised teams of undergraduate students using a web-based system over a preliminary automated annotation, both developed by J. C. Setubal (adapted from PubMed 19429624). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter vinelandii DJ Negative Cocci Yes 1 2 Aerobe Lithotroph Mesophilic Multiple Free living Chains - Pairs - Singles No 322710 NC_012560.1 Bac0002664 Nitrobacter hamburgensis X14 "Nitrobacter hamburgensis (strain X14 / DSM 10229) is a rod-shaped, motile, aerobe alpha-proteobacterium. N. hamburgensis is a facultatively lithoautotrophic bacterium that gains energy from the oxidation of nitrite to nitrate (nitrification). It is ubiquitous in nature and has been isolated from several environments, including soil, building sandstone, and sewage sludge. In addition to growing lithoautotrophically, Nitrobacter hamburgensis is able to grow mixotrophically with NO2 and organic components or heterotrophically solely with organic components. It can be used in biotechnology for efficient transformation of fertilizer nitrogen in agricultural systems, and is a key component of nitrogen removal in wastewater treatment. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Nitrobacter Nitrobacter hamburgensis Negative Rod Yes 1 2 Aerobe Lithoautotroph - Chemolithoautotroph Mesophilic Terrestrial Free living No 323097 NC_007964.1 Bac0002665 Nitrosococcus oceani ATCC 19707 "Nitrosococcus oceani, formerly known as Nitrosocystis oceanus, is a Gram-negative ammonia-oxidizing bacterium isolated from seawater. It is an obligate chemolithoautotroph capable of extracting energy and reducing power from the oxidation of ammonia to nitrite. In contrast to betaproteobacterial nitrifer genomes, it contains two complete rrn operons that belong to different classes. Several blocks of genes that were identified as putatively phage related, indicating that N.oceani has been a frequent target for bacteriophage in the ocean. It contains the genes coding for the biosynthesis of the 20 amino acids. Twenty aminoacyl-tRNA synthetases were identified, including two forms of LysRS and two distinct forms of GlxRS but AsnRS and GlnRS were missing. At least 22 genes involved in iron transport have been identified. Two genes coding for Fur are present. Several uptake systems for other inorganic ions are present. Several sodium/hydrogen antiporters have been found; they play an important role in maintaining intracellular pH and conferring salt tolerance. Nitrosococcus oceani has several protein export and secretion systems, including a preprotein translocase, genes coding gor the TatABC system, as well as genes coding for the type II general secretion/pilus synthesis pathway and genes coding for the type IV conjugal DNA/protein transfer system. It has a cluster of genes encoding parts of a PTS-type sugar transport system. It encodes a form I RuBisCO. N.oceani flagellation and motility genes are arranged in two large clusters. The master switch operon flhCD seems to be missing. N.oceani seems to have only a limited chemotactic activity because only one methyl-accepting chemotaxis protein was identified. A large number of complete two-component systems has been identified. It contains a limited inventory contributing to stress tolerance and oxidative stress tolerance, respectively. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani ATCC 19707 Negative Cocci Yes 1 2 Aerobe Chemolithotroph - Autotroph Mesophilic Aquatic Free living Pairs - Singles No 323261 NC_007483.1 Bac0002666 Alcaligenes aquatilis str. QD168 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes aquatilis 323284 NZ_CP032153.1 Bac0002667 Alcaligenes aquatilis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes aquatilis 323284 NZ_CP078017.1 Bac0002668 Pontibacter actiniarum str. Pontibacter sp. Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter actiniarum 323450 NZ_CP021235.1 Bac0002669 Neorhizobium galegae bv. officinalis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium galegae 323656 CCRI00000000.1 Bac0002670 Nitrosospira multiformis ATCC 25196 The betaproteobacterium Nitrosospira is an ammonia-oxidizing bacterium. This chemolithoautotrophic bacterium oxidizes ammonia to nitrite as an energy source and assimilates CO2 as the major carbon source. They are of ecological importance in that they contribute to the biological oxidation of inorganic nitrogen compounds. Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) consists of one chromosome and three plasmids. (EBI Integr8) Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis ATCC 25196 Negative Yes 1 2 Aerobe Lithotroph - Autotroph Mesophilic Terrestrial Free living No 323848 NC_007615.1 Bac0002671 Shewanella loihica PV-4 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. . They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella loihica , formerly Shewanella sp. strain PV-4, was isolated from iron-rich microbial mats at an active, deep sea, hydrothermal Naha Vent (1325 m below sea level), located on the South Rift of Loihi Seamount, Hawaii. PV-4 is an orange colour, psychrotolerant, capable of reducing metals at temperatures from 0 to 37 degrees C, and has a temperature optimum of 18 degrees C. Growth is observed in a salinity range of 0.05 to 5%. Metal reduction is observed at pH 7.0-8.9, while growth is observed in a pH range of 5.5 to 10 aerobically. The electron donors lactate, formate, pyruvate as well as hydrogen can be utilized with a reduction of Fe(III)-citrate, Mn(IV)-oxide, Co(III)-EDTA, Cr(VI), and U(VI). The strain can not use acetate as an electron donor. PV-4 produces single domain magnetite at temperatures from 14 to 37 degrees C (adapted from http://genome.jgi-psf.org/she_p/she_p.home.html). (HAMAP: SHELP)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella loihica PV-4 Negative Rod Yes 1 2 Facultative 16 Heterotroph Mesophilic Multiple Free living Pairs - Singles Nonsporulating No 323850 NC_009092.1 Bac0002672 Mycobacterium alsense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium alsense non-motile non-spore-forming 324058 LZKT00000000.1 Bac0002673 Mesoplasma coleopterae str. BARC 779 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma coleopterae 324078 NZ_CP024968.1 Bac0002674 Bacillus infantis "Bacillus infantis is a Gram-positive, rod-shaped bacterium that thrives optimally at moderate temperatures, categorizing it as a mesophile; it is a chemoheterotroph, relying on organic compounds for energy and growth. This microbe is commonly found in various environments including soil, water, and the gastrointestinal tracts of animals, including humans. As a facultative anaerobe, Bacillus infantis can grow in both the presence and absence of oxygen, allowing it to adapt to diverse ecological niches. The Gram-positive nature of Bacillus infantis is indicative of its thick peptidoglycan layer, which not only provides structural support but also plays a critical role in its resistance to certain antibiotics. Its rod shape enables efficient movement and adaptation in its environment, facilitating nutrient acquisition. Being a mesophile, it exhibits growth between 20°C and 45°C, making it well-suited for environments ranging from the human body to more temperate soil conditions. As a chemoheterotroph, Bacillus infantis obtains its carbon and energy by metabolizing organic compounds, which is essential for its survival in nutrient-rich environments like the gut. Its facultative anaerobic characteristics allow it to switch between aerobic respiration and fermentation, enabling it to thrive in both oxygen-rich and oxygen-poor environments. Bacillus infantis has garnered attention for its potential probiotic properties. Some studies suggest that it may play a protective role in the gut microbiome, enhancing digestive health and modulating immune responses. Additionally, its resilience against environmental stresses positions it as a candidate for biotechnology applications, such as in the development of natural preservatives and fermentation processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus infantis Positive Rod Aerobe cecal contents; gastrointestinal tract; GI microbiome; GI microbiota; infant GI tract; infant gut; intestine; lower gut 324767 SEHK00000000.1 Bac0002675 Shewanella baltica OS155 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella baltica, isolated from the Baltic Sea, is able to grow at 4 degrees C but not 37, unlike other Shewanella species. Under anaerobic conditions, oxidation of organic matter can be coupled to the reduction of nitrate, Fe(III) and sulfur compounds. OS155 is unable to produce an FeS precipitate on TSI agar medium, whereas OS195 can do so. OS155 does not produce N-acetyl-b-glucosaminidase, or chymotrypsin. It can use gentiobiose, cellobiose, sucrose, d-gluconate and citrate but not glycogen, malate or dextrin as sole sources of carbon and energy. OS195 can also use these latter three substrates (based on PubMed 9542087). (HAMAP: SHEB5)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Negative Rod Yes 1 2 Aerobe; anaerobe Heterotroph Mesophilic Aquatic Free living Pairs - Singles Nonsporulating No 325240 NC_009038.1 Bac0002676 Bacillus velezensis FZB42 "Bacillus velezensis FZB42 is a Gram-positive, rod-shaped, aerobic bacterium known for its ability to sporulate and thrive in terrestrial habitats. This strain is notable for its robust growth under aerobic conditions, which is a key characteristic of many Bacillus species. As a sporulating organism, B. velezensis FZB42 possesses the capability to form endospores, allowing it to withstand unfavorable environmental conditions and contribute to its survival and persistence in soil ecosystems.↵↵B. velezensis FZB42 has garnered attention for its potential applications in agriculture, particularly due to its beneficial traits that may enhance plant growth and health. The bacterium's ability to produce various secondary metabolites could play a role in its interactions with plants and other microorganisms in the soil. Furthermore, its terrestrial habitat suggests that B. velezensis FZB42 may engage in complex ecological interactions, including nutrient cycling and symbiotic relationships with plant roots.↵↵The ecological significance of B. velezensis FZB42 is underscored by its potential role in promoting soil health and plant vitality, which can be pivotal in sustainable agricultural practices. As research continues to explore the functional capacities of this strain, its dual role as a soil inhabitant and a potential biocontrol agent offers promising avenues for enhancing agricultural resilience against biotic and abiotic stressors." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 326423 NC_009725.2 Bac0002677 Bifidobacterium breve UCC2003 "Bifidobacterium breve UCC2003 is a Gram-positive, non-spore-forming bacterium that exhibits a rod-like shape and thrives in the mesophilic temperature range (optimal growth at approximately 37°C). As a chemoheterotroph, it derives its energy and carbon from organic compounds, specifically carbohydrates, and is categorized as an obligate anaerobe, meaning it requires an oxygen-free environment for growth and survival. Bifidobacterium breve UCC2003 is a member of the human gut microbiota and is primarily found in the intestines, particularly within the colon, where it plays a crucial role in maintaining gut health. It is also present in other sites in the body, including the oral cavity and female urogenital tract, showcasing its versatility in colonizing different niches. The bacterium is known for its probiotic properties, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut epithelial health and overall metabolic processes. In addition to its role in digestion, Bifidobacterium breve UCC2003 has been studied for its potential health benefits, including modulation of the immune response, inhibition of pathogenic bacteria, and alleviation of gastrointestinal disorders such as diarrhea and irritable bowel syndrome. Current research is exploring its use in functional foods and dietary supplements aimed at enhancing gut flora balance and promoting overall health. The strain's genomic studies have revealed unique adaptations that facilitate its survival in the harsh intestinal environment, making it a focal point in probiotic research and applications." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe gastro-intestinal (GI) tract 326426 NC_020517.1 Bac0002678 Caballeronia choica Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia choica aerobic 326476 FCON00000000.2 Bac0002679 Neisseria animaloris "Neisseria animaloris is a Gram-negative, rod-shaped bacterium known for its microaerophilic growth requirements and optimal temperature of 16.0°C. This organism is non-spore-forming, indicating that it relies on moisture and specific environmental conditions for survival rather than sporulation to endure unfavorable circumstances. ↵↵As a member of the genus Neisseria, N. animaloris shares certain phenotypic characteristics with other species in this group, including a preference for low-oxygen environments, which is typical of microaerophiles. The relatively low optimal growth temperature suggests that N. animaloris may inhabit cooler environments, potentially including animal hosts or specific ecological niches where such conditions are prevalent.↵↵Understanding the specific environmental preferences and physiological traits of N. animaloris can provide insights into its role within microbial communities. The microaerophilic nature of this bacterium may enable it to interact with other microorganisms in its habitat by participating in unique metabolic processes that thrive under low-oxygen conditions. This ecological niche could influence nutrient cycling and microbial dynamics in environments where N. animaloris is present, making it a potential contributor to the overall microbiome in those habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria animaloris Gram-negative rod non-motile microaerophile 16 psychrotolerant non-spore-forming 326522 NZ_LR134516.1 Bac0002680 Shewanella sp. HN-41 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. HN-41 327275 AFOZ00000000.1 Bac0002681 Enterococcus aquimarinus "Enterococcus aquimarinus is a Gram-positive, rod-shaped bacterium characterized by its microaerophilic growth requirements, thriving optimally at a temperature of 32.0°C. This organism is part of the Enterococcus genus, known for its resilience and adaptability in various environments. The Gram-positive nature of E. aquimarinus indicates a thick peptidoglycan layer in its cell wall, which can contribute to its survival under fluctuating environmental conditions.↵↵Microaerophiles like E. aquimarinus typically require lower levels of oxygen for growth than are present in the atmosphere, suggesting a specialized metabolic capacity that allows for efficient energy production under such conditions. The optimal growth temperature of 32.0°C aligns with the conditions found in some aquatic environments, hinting at a potential adaptation to marine or brackish ecosystems.↵↵The ecological insights gained from the traits of Enterococcus aquimarinus may point towards its role in nutrient cycling within such habitats, where the interplay between oxygen levels and temperature could influence microbial community dynamics. Understanding the physiological characteristics of E. aquimarinus may also aid in elucidating its potential functions in biogeochemical processes in marine environments, emphasizing the significance of studying such microbes in relation to ecological health and stability." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus aquimarinus Gram-positive rod non-motile microaerophile 32 mesophilic 328396 JXKD00000000.1 Bac0002682 Dokdonella fugitiva str. A3 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dokdonella Dokdonella fugitiva 328517 SLWQ00000000.1 Bac0002683 Parabacteroides goldsteinii str. 910340 "Parabacteroides goldsteinii str. 910340 is a Gram-negative, anaerobic bacterium that belongs to the diverse group of bacteria residing in the human gastrointestinal tract. As a member of the genus Parabacteroides, this strain is adapted to thrive in oxygen-depleted environments, which is characteristic of the gut microbiome. The Gram-negative nature of P. goldsteinii indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that can influence its interactions within the microbiome and its response to antibiotics.↵↵The anaerobic requirement signifies that P. goldsteinii relies on fermentation or other anaerobic metabolic processes for energy production, which is essential for its survival in the intestinal niche where oxygen levels are minimal. This metabolic characteristic may play a role in the broader microbial community dynamics, as anaerobes like P. goldsteinii contribute to the complex interactions that underpin gut homeostasis.↵↵Furthermore, the existence of Parabacteroides species, including P. goldsteinii, is indicative of the potential for diverse metabolic pathways that can impact nutrient availability and host health. Understanding the characteristics of P. goldsteinii str. 910340 may provide insights into its function within the gut microbiome, including its potential roles in fermentation processes and the modulation of the host's immune response. This highlights the significance of anaerobic bacteria in maintaining gut health and balance within the microbial ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides goldsteinii Negative Anaerobe 328812 LFJV00000000.1 Bac0002684 Alistipes onderdonkii "Alistipes onderdonkii is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites including the gut, mouth, and skin of humans and animals. As an obligate anaerobe, Alistipes onderdonkii requires the absence of oxygen to survive and grow. The Gram-negative cell wall structure of this microbe contributes to its ability to evade the host's immune system, allowing it to persist in the gut and other body sites. Its rod shape is typical of many bacterial species, providing a large surface area for nutrient absorption and interactions with the host environment. As a mesophilic microbe, Alistipes onderdonkii grows best in temperatures between 20-45°C, which is consistent with the temperatures found in the human body. As a chemoheterotroph, it relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its growth and survival. Alistipes onderdonkii can be found in the gut microbiome of healthy individuals, where it plays a role in maintaining the balance of the microbial community, and its presence has been linked to various diseases, including inflammatory bowel disease and obesity, highlighting the complex relationships between the microbiome and human health. The ability of Alistipes onderdonkii to produce short-chain fatty acids as byproducts of fermentation has been shown to have anti-inflammatory effects, which may contribute to its potential therapeutic applications." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes onderdonkii Negative Anaerobe 328813 RCXC00000000.1 Bac0002685 Acaryochloris marina MBIC11017 "Cyanobacteria are oxygenic, phototrophic organisms. They encode two photosystems (PSI and PSII) releasing electrons from water and fix carbon dioxide via the Calvin-Benson-Bassham pathway. Thus they absorb large quantities of C(O)2 and produce (O)2. Some cyanobacteria are also able to fix (N)2.This cyanobacterium was first collected from a colonial ascidian from the Palau Islands; it has since been collected as a free-living organism in Japan and the USA. It is unusual in containing chlorophyll d as the major (95%) and chlorophyll a as the minor (5%) photosynthetic pigments with phycocyanin and trace amounts of chlorophyll c. Oxygenic photosynthesis based on chlorophyll d may have evolved as an acclimatization to far-red light environments, or an as intermediate between the red-absorbing oxygenic and the far-red-absorbing anoxygenic photosynthesis that uses bacteriochlorophylls. Because of the unusual ratio of chlorophyll a to chlorophyll d in this organism, it has been used as a model to study the spectrographic characteristics of the two pigments. (HAMAP: ACAM1)" Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Acaryochloridaceae Acaryochloris Acaryochloris marina MBIC 11017 Negative Cocci No 1 2 Aerobe Photosynthetic Mesophilic Aquatic Symbiotic Singles No 329726 NC_009925.1 Bac0002686 Bacteroides intestinalis "Bacteroides intestinalis is a gram-negative, rod-shaped microbe that is mesophilic, thriving in moderate temperatures, and is a chemoheterotroph, requiring organic compounds for energy and growth, which can be found in various body sites including the gut, mouth, and skin of humans and animals. As a gram-negative bacterium, Bacteroides intestinalis has a unique outer membrane structure that plays a crucial role in its ability to interact with its environment and evade the host's immune system. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients and adherence to surfaces. As a mesophilic microbe, Bacteroides intestinalis grows best in temperatures between 20-45°C, making it well-suited to the human body's normal temperature range. As a chemoheterotroph, it relies on the breakdown of complex organic molecules to obtain energy, which is reflected in its ability to degrade a wide range of polysaccharides and proteins. Bacteroides intestinalis is an obligate anaerobe, requiring the absence of oxygen to survive and grow, which is why it is typically found in environments with low oxygen levels, such as the gut. This microbe plays a crucial role in the digestion and fermentation of complex carbohydrates in the gut, producing short-chain fatty acids that provide energy to the host. The unique combination of characteristics in Bacteroides intestinalis allows it to thrive in a variety of environments, from the human gut to the soil and sediment of aquatic ecosystems, where it contributes to the degradation of organic matter and the cycling of nutrients. Bacteroides intestinalis has been shown to produce certain enzymes that can break down and inactivate certain antibiotics, making it a subject of research in the development of new antimicrobial therapies." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis Negative Anaerobe 329854 QSQI00000000.1 Bac0002687 Bacteroides intestinalis str. KLE1704 "Bacteroides intestinalis strain KLE1704 is a Gram-negative anaerobic bacterium that plays a significant role in the human gut microbiome. As a member of the Bacteroides genus, this strain is adapted to thrive in low-oxygen environments, which is characteristic of the intestinal tract. The anaerobic nature of Bacteroides intestinalis suggests its involvement in various metabolic processes that occur in the gut, including the fermentation of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health.↵↵The Gram-negative cell wall structure of Bacteroides intestinalis KLE1704, characterized by a thin peptidoglycan layer surrounded by an outer membrane, may confer advantages in terms of resistance to certain antibiotics and environmental stresses within the gut. This trait is particularly relevant given the complex interactions that occur in the gut ecosystem, where competition for nutrients and space among diverse microbial populations is a key factor influencing community composition and function.↵↵Furthermore, the presence of Bacteroides intestinalis in the gut could be indicative of a healthy microbiota, as species within this genus are often associated with the breakdown of dietary fibers and the modulation of immune responses. This underscores the importance of anaerobic bacteria like Bacteroides intestinalis in maintaining gut homeostasis and overall health. Understanding the specific roles of such strains can provide insights into their contributions to human health and disease states." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis Negative Anaerobe 329854 LTDF00000000.1 Bac0002688 Sulfolobus acidocaldarius DSM 639 "Sulfolobus acidocaldarius is an aerobic thermoacidophilic crenarchaeon which grows optimally at 80 degrees Celsius and pH 2 to 3 in terrestrial solfataric springs. The genome contains an integrated, and certainly encaptured, pARN-type conjugative plasmid that could facilitate intercellular chromosomal gene exchange. (HAMAP: SULAC)" Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius DSM 639 Cocci No 1 1 Aerobe 70 Lithotroph Thermophilic Specialized Free living Singles Nonsporulating No 330779 NC_007181.1 Bac0002689 Escherichia coli O139:H28 str. E24377A "Escherichia coli O139:H28 str. E24377A is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is 37.0°C, which is consistent with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli O139:H28 str. E24377A is often found within the intestinal tracts of mammals, where it plays a role in the complex microbial community. The facultative anaerobic nature of this strain suggests that it can efficiently utilize various metabolic pathways depending on the availability of oxygen, which may contribute to its survival in diverse environments within the host.↵↵The ecological insights provided by the traits of E. coli O139:H28 str. E24377A highlight its potential adaptability in fluctuating conditions within the host's gut. This adaptability may facilitate its persistence in the microbiome and underscore its significance in studies focusing on microbial interactions and host health. Further research could illuminate the specific roles this strain plays in gut ecology, nutrient cycling, and its interactions with other microbial species." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 331111 NC_009801.1 Bac0002690 Nonlabens spongiae str. JCM 13191 "Nonlabens spongiae strain JCM 13191 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This organism thrives optimally at a temperature of 29.0°C, suggesting a preference for moderately warm environments, which may be indicative of its natural habitat. ↵↵The Gram-negative nature of Nonlabens spongiae implies the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may play a critical role in its interaction with the surrounding environment, including its resistance to certain antibiotics and its ability to engage with other microbial communities. The absence of sporulation indicates that this strain relies on vegetative growth for reproduction and survival, which may influence its adaptability to fluctuating environmental conditions.↵↵Understanding the physiological characteristics of Nonlabens spongiae strain JCM 13191 contributes to the broader knowledge of microbial diversity, particularly in aquatic ecosystems, where such bacteria may play a role in nutrient cycling and organic matter decomposition. The specific adaptation to aerobic conditions suggests that this bacterium may be involved in processes that require oxygen, potentially influencing the microbial dynamics in its ecological niche. Further research into its metabolic capabilities could reveal additional ecological functions and interactions within its environment." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens spongiae Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 331648 NZ_CP019344.1 Bac0002691 Pediococcus stilesii "Pediococcus stilesii is a Gram-positive, non-spore-forming spherical bacterium that thrives optimally at 45.0°C. This temperature preference suggests that P. stilesii is well-adapted to warm environments, which may influence its ecological niche and potential applications in fermentation processes. ↵↵As a member of the Pediococcus genus, P. stilesii is likely involved in the production of lactic acid, a common feature among lactic acid bacteria. This trait can be pivotal in various fermentation processes, contributing to the preservation of food products through acidification. The spherical morphology of P. stilesii may also provide advantages in biofilm formation, potentially enhancing its resilience and stability in certain fermentation environments.↵↵Overall, the specific adaptations of Pediococcus stilesii to elevated temperatures, combined with its Gram-positive nature and spherical shape, indicate its potential significance in industrial microbiology, particularly in the development of heat-tolerant cultures for food fermentation and preservation. Further research could elucidate its role in specific fermentation ecosystems and its interactions with other microbial communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus stilesii Gram-positive sphere non-motile 45 thermophilic non-spore-forming 331679 VBTH00000000.1 Bac0002692 Chitinophaga skermanii str. DSM 23857 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga skermanii aerobic 331697 QLLL00000000.1 Bac0002693 Sphingobium indicum str. DSM 26779 "Sphingobium indicum str. DSM 26779 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats under aerobic conditions, with an optimal growth temperature of 28.0°C. This microbe is part of the Sphingobium genus, which is characterized by its ability to degrade a variety of organic compounds, suggesting potential roles in bioremediation processes within its natural environment. ↵↵The Gram-negative cell wall structure of Sphingobium indicum str. DSM 26779 is indicative of its resilience and adaptability, as this feature typically confers protection against certain environmental stresses. The rod shape may facilitate motility and nutrient uptake, enhancing its survival in soil ecosystems where competition for resources is high.↵↵Given its aerobic requirement, Sphingobium indicum str. DSM 26779 likely participates in various biochemical cycles, contributing to the degradation of organic matter and the cycling of carbon and nutrients in terrestrial environments. Its optimal growth temperature suggests a preference for temperate conditions, which may align with seasonal variations in its habitat, potentially influencing its metabolic activities during different times of the year. Overall, Sphingobium indicum str. DSM 26779 exemplifies the complex interactions within terrestrial microbial communities, where its metabolic capabilities may help mitigate environmental pollutants and maintain soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium indicum Negative Rod No 1 2 Aerobic 28 Mesophilic Terrestrial Free living 332055 SEOM00000000.1 Bac0002694 Clostridium drakei str. SL1 "Clostridium drakei str. SL1 is a Gram-negative, rod-shaped bacterium that exhibits spore-forming capabilities and thrives in anaerobic environments, with an optimal growth temperature of 32.0°C. This microorganism belongs to the genus Clostridium, which is well-known for its anaerobic metabolism and ability to produce endospores, allowing it to survive in harsh conditions.↵↵The Gram-negative classification of C. drakei str. SL1 indicates a distinctive cell wall structure characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This structural feature may influence its interactions with the environment and other microorganisms. The rod shape of the bacterium suggests a potential for motility and adaptability within its ecological niche, although specific motility traits are not detailed.↵↵As a spore-forming organism, C. drakei str. SL1 can endure unfavorable conditions, entering a dormant state until environmental factors become favorable for growth and reproduction. This sporulation ability is particularly advantageous in anaerobic habitats, where competition for resources and fluctuating conditions can be prevalent.↵↵The optimal growth temperature of 32.0°C positions C. drakei str. SL1 within a range that may be typical for many soil and gut-associated microorganisms, suggesting it could play a role in nutrient cycling or contribute to the microbial diversity in anaerobic ecosystems. This adaptability to specific thermal and anaerobic conditions underscores its potential significance in ecological and biological contexts, particularly in environments where oxygen is limited." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium drakei Gram-negative rod anaerobic 32 mesophilic spore-forming 332101 NZ_CP020953.1 Bac0002695 Shewanella xiamenensis str. T17 "Shewanella xiamenensis strain T17 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities, allowing it to thrive in various environmental conditions. This organism is optimally active at a temperature of 32.0°C, which may suggest a preference for mesophilic habitats. ↵↵As a member of the Shewanella genus, S. xiamenensis str. T17 is likely to possess versatile electron transport systems that enable it to utilize a range of electron acceptors, a feature characteristic of many Shewanella species. This adaptability may contribute to its survival in diverse ecological niches, including marine and sedimentary environments, where fluctuating oxygen levels are common.↵↵The ability to function under both aerobic and anaerobic conditions positions S. xiamenensis str. T17 as a potential player in biogeochemical cycles, particularly in the reduction of metals and other compounds in the environment. Such metabolic versatility not only underscores the ecological significance of this strain but also highlights the potential applications in bioremediation and bioenergy production, where the reduction of heavy metals and organic compounds is crucial. Further research may elucidate the specific roles of this strain in its natural habitat and its interactions with other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella xiamenensis Gram-negative rod facultative aerobe/anaerobe 32 mesophilic non-spore-forming 332186 LDOA00000000.1 Bac0002696 Alkalihalobacillus okhensis str. Kh10-101T Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halalkalibacter Halalkalibacter okhensis 333138 JRJU00000000.1 Bac0002697 Klenkia brasiliensis Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Klenkia Klenkia brasiliensis 333142 FNCF00000000.1 Bac0002698 Ferroplasma acidarmanus Fer1 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Ferroplasma Ferroplasma acidarmanus 333146 NC_021592.1 Bac0002699 Enterococcus faecium DO "Enterococcus faecium DO is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This organism is part of the Enterococcus genus, which is known for its resilience in various environments and ability to survive in both aerobic and anaerobic conditions. As a facultative anaerobe, E. faecium DO can utilize oxygen for respiration when available but is also capable of fermentative metabolism in the absence of oxygen, allowing it to thrive in diverse ecological niches.↵↵Enterococcus faecium, including the DO strain, is commonly found in the gastrointestinal tracts of humans and animals, where it plays a role in the complex microbial community. Its ability to adapt to varying oxygen levels suggests a metabolic versatility that may contribute to its persistence in both natural and clinical environments. This adaptability may also influence its interactions with other microbial species, potentially impacting the dynamics of microbial communities.↵↵Moreover, the Gram-positive nature of E. faecium DO indicates a thick peptidoglycan layer in its cell wall, which is a characteristic feature that can influence its susceptibility to certain antibiotics and its overall survival in hostile environments. Understanding the traits of E. faecium DO not only provides insights into its physiological capabilities but also highlights its potential roles in various ecological settings, where it may interact with other microorganisms and contribute to nutrient cycling." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 333849 NC_017960.1 Bac0002700 Providencia heimbachae str. 99101 "Providencia heimbachae str. 99101 is a Gram-negative bacterium that belongs to the genus Providencia. This strain exhibits the characteristic features of Gram-negative organisms, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contribute to its structural integrity and influence its interactions with the environment. ↵↵While specific metabolic pathways and ecological roles of P. heimbachae str. 99101 are not delineated in the provided data, members of the Providencia genus are known for their versatility in utilizing various carbon sources and their presence in diverse environments, including soil and aquatic habitats. This suggests that P. heimbachae str. 99101 may possess similar metabolic capabilities, enabling it to adapt to different ecological niches.↵↵The unique aspects of P. heimbachae str. 99101 may offer insights into the microbial dynamics within its specific environment. Understanding its physiological traits could contribute to broader knowledge regarding microbial community interactions and the potential roles of Gram-negative bacteria in nutrient cycling and ecosystem functioning. Further studies are warranted to elucidate the specific ecological contributions of this strain and its interactions with other microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia heimbachae negative 333962 NZ_CP028385.1 Bac0002701 Orientia tsutsugamushi str. Ikeda "Orientia tsutsugamushi (previously called Rickettsia tsutsugamushi) is an obligate intracellular rickettsia living in the salivary glands of trombiculid mites. The bacterium is maternally inherited in mites and is transmitted to humans during larval feeding. Orientia tsutsugamushi is the causative agent of scrub typhus, a disease characterized by fever, rash, eschar, pneumonitis meningitis and disseminated intravascular coagulation. If left untreated, it can lead to sever multiple organ failure. The mortality rate from scrub typhus in untreated patients ranges from 1% to 40%. During World War II, Allied forces suffered more fatalities due to this disease than as a direct consequence of the fighting in South-East Asia. Scrub typhus is restricted to a well-defined area that extends from Eastern Russia and Northern Japan in the north and Northern Australia in the south to Pakistan and Afghanistan in the west. Orientia tsutsugamushi (strain Boryong) was isolated from a Korean patient. Its genome is made up of a single circular chromosome of 2,127,051 base pairs and is the largest among the genomes of Rickettsiales sequenced to date. A unique feature of Orientia tsutsugamushi is the presence of 4197 identical repeats of more than 200 bp, which represents 37% of the genome. In total, 1146 mobile genetic elements, representing 40% of the genome, were identified. Exceptional is also the presence of 359 tra genes for conjugative Type IV Secretion Systems compared to the 4 tra genes of R. felis and to the unique tra gene of R. bellii. Located within or in the immediate vicinity of the tra clusters are more than 200 genes encoding paralogous proteins putatively involved signaling and host-cell interaction processes. 414 transposases were identified, that belong to 5 families, approximately 86% of which are pseudogenes. (HAMAP: ORITB)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Orientia Orientia tsutsugamushi Ikeda Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Homo sapiens Yes 334380 NC_010793.1 Bac0002702 Finegoldia magna ATCC 29328 "Finegoldia magna ATCC 29328 is a gram-positive, coccoid-shaped bacterium that thrives in anaerobic environments. This organism is classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen. It is a heterotroph, deriving its nutrients from organic compounds found in its environment. F. magna predominantly resides in the human microbiota, commonly found in various body sites, including the gastrointestinal tract, oral cavity, and occasionally in sterile sites during infections, such as abscesses. The coccoid shape of Finegoldia magna contributes to its ability to form clusters and withstand adverse conditions in anaerobic niches. Being a gram-positive bacterium, it possesses a thick peptidoglycan layer in its cell wall, which not only provides structural integrity but also plays a role in its pathogenic potential. The organism prefers a warm temperature range, aligning with the human body temperature, which facilitates its survival and growth in the host. As a heterotroph, F. magna metabolizes organic substrates for energy and carbon, which is crucial for its survival in the nutrient-rich environments of the mammalian body. Its role in the human microbiome is significant, as it is implicated in various aspects of health, including digestion and immune modulation. However, it can also be associated with opportunistic infections, particularly in individuals with compromised immune systems or disrupted microbiota. Research into F. magna has revealed its potential role in polymicrobial infections, particularly in wound infections and abscess formations. Understanding its interaction with other microbial species and its contributions to both health and disease continues to be a subject of interest in microbiological studies." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna ATCC 29328 Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living Homo sapiens Yes 334413 NC_010371.1 Bac0002703 Rhodococcus qingshengii str. 23b-28 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus qingshengii 334542 NOVD00000000.1 Bac0002704 Rhodococcus qingshengii Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus qingshengii 334542 FMBB00000000.1 Bac0002705 Nitrosomonas eutropha C91 "Nitrosomonas eutropha C91 is an autotrophic nitrifying bacterium. As a member of the ammonia-oxidizing bacteria, it catalyzes the oxidation of ammonia to meet its energy requirements for growth. This reaction is the first step in the oxidation of ammonia to nitrate which is an integral part of the biogeochemical N cycle and plays a central role in the availability of nitrogen to plants and hence in limiting CO2 fixation. Nitrifying bacteria also are important players in the treatment of industrial and sewage waste in the first step of oxidizing ammonia to nitrate. Evidence suggests that ammonia-oxidizing bacteria contribute significantly to the global production of nitrous oxide (produced by the reduction of nitrite). Nitrosomonas eutropha C91 (also known as strain Nm57; formerly ATCC 25984, which is no longer available) is a Gram-negative betaproteobacterium closely related to the better studied Nitrosomonas europaea. N. eutropha is an aerobic chemolithoautotroph deriving its carbon from CO2 and generating energy and reducing equivalents from the oxidation of ammonia to nitrite. It is pleomorphic (rod to pear-shaped) and is occasionally found in short chains. N. eutropha is commonly found in strongly eutrophic environments such as municipal and industrial sewage disposal systems and has a high tolerance for elevated ammonia concentrations. The cells are motile. The utilization of urea was not observed. Although N. eutropha is very similar to N. europaea, some notable differences exist. N. eutropha is able to grow anaerobically with H2 as the reductant and nitrite as the electron acceptor. However, the genomic sequence of N. europaea fails to give any indication supporting the presence of this ability. Additionally, unlike N. europaea , N. eutropha possesses carboxysomes. These differences suggest that significant differences in metabolic capability may exist between these related strains. (HAMAP: NITEC)" Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas eutropha C91 Negative Yes 1 2 Aerobe Chemolithotroph - Autotroph Mesophilic Multiple Free living Chains - Singles No 335283 NC_008344.1 Bac0002706 Syntrophobacter fumaroxidans MPOB "Syntropobacter fumaroxidans is a syntrophic propionate-oxidizing bacterium, which was isolated from a culture enriched from anaerobic granular sludge. It oxidizes propionate syntrophically in co-culture with the hydrogen- and formate-utilizing Methanospirillum hungateii, and is able to oxidize propionate and other organic compounds in pure culture with sulfate or fumarate as the electron acceptor. Additionally, it ferments fumarate. It is a non-motile, non-spore-forming, Gram- bacteria. (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans MPOB Negative Rod No 1 2 Anaerobe 37 Mesophilic Aquatic Singles - Pairs Nonsporulating No 335543 NC_008554.1 Bac0002707 Arthrobacter subterraneus Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter subterraneus aerobic 335973 FNDT00000000.1 Bac0002708 Sulfitobacter litoralis "**Sulfitobacter litoralis** is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 16.0°C. This organism belongs to a group of marine bacteria, which are often associated with sulfur cycling in coastal environments. The ability to grow optimally at relatively low temperatures suggests that **S. litoralis** may play a significant role in microbial communities in cooler marine habitats, where it could contribute to biogeochemical processes related to sulfur and nutrient cycling.↵↵The aerobic nature of **S. litoralis** indicates its reliance on oxygen for metabolic processes, which aligns with its habitat in oxygen-rich coastal waters. This adaptation not only highlights the organism's ecological niche but also suggests potential interactions with other marine microorganisms that share similar oxygen requirements. Furthermore, the rod-shaped morphology of **S. litoralis** may provide structural advantages for motility and nutrient uptake in its aquatic environment.↵↵Understanding the characteristics of **Sulfitobacter litoralis** aids in elucidating its role in marine ecosystems, particularly in the context of sulfur metabolism. Its presence in coastal waters underscores the importance of such bacteria in sustaining the health and function of marine microbial communities, especially in nutrient-poor environments where they may influence the availability of essential elements through their metabolic activities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter litoralis Gram-negative rod aerobic 16 psychrotolerant 335975 FNJD00000000.1 Bac0002709 Sphingobium fuliginis str. OMI Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium fuliginis 336203 BEWI00000000.1 Bac0002710 Stenotrophomonas ginsengisoli str. DSM 24757 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas ginsengisoli aerobic 336566 LDJM00000000.1 Bac0002711 Halorubrum ezzemoulense str. Fb21 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ezzemoulense 337243 NZ_CP034940.1 Bac0002712 Pseudidiomarina taiwanensis str. PIT1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina taiwanensis 337250 PIQG00000000.1 Bac0002713 Leptospira borgpetersenii serovar Hardjo-bovis str. 203 "Leptospira borgpetersenii serovar Hardjo-bovis str. 203 is a Gram-negative, nonsporulating spirillum that is classified as an aerobic bacterium. This species is primarily host-associated, indicating a close relationship with its host organisms, where it may inhabit various tissues. Its aerobic nature suggests a reliance on oxygen for metabolic processes, which is typical for many members of the Leptospira genus.↵↵As a member of the Leptospira genus, L. borgpetersenii serovar Hardjo-bovis str. 203 is adapted to thrive in environments that provide access to its specific host organisms. The morphological characteristics, including its spiral shape, facilitate motility, which is crucial for navigating the host's environment. The nonsporulating trait implies that this strain does not form spores, which may influence its survival strategies outside the host.↵↵Understanding the ecological role of L. borgpetersenii serovar Hardjo-bovis str. 203 could provide insights into its interactions with both host and environmental factors, particularly in relation to how it might persist in the host-associated habitats. This adaptation may also affect its transmission dynamics and interactions within microbiomes that include both pathogenic and non-pathogenic microorganisms. Further studies could elucidate the specific roles this strain plays in its ecological niche, contributing to our understanding of host-microbe relationships in the context of Leptospira infections." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 338217 NZ_CP021412.1 Bac0002714 Pelobacter propionicus DSM 2379 "Pelobacter propionicus (strain DSM 2379) is an anaerobic bacteria phylogenetically associated with the delta subdivision of the Proteobacteria. This species is ubiquitous in both marine and fresh water, and in anaerobic sedmiments. It is able to convert the unsaturated hydrocarbon acetylene to acetate and ethanol via acetylaldehyde as an intermediate. Pelobacter may survive in some sediments as an Fe(III) or elemental sulfur reducer as well as growing fermentatively as an ethanol-oxidizing acetogen. Organisms that can completely oxidize organic acids with Fe(III) serving as the sole electron acceptor are responsible for most of the oxidation of organic matter in anaerobic sediments. (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Pelobacter Pelobacter propionicus DSM 2379 Negative Rod No 1 2 Anaerobe 30 Mesophilic Multiple Free living Singles Nonsporulating No 338966 NC_008609.1 Bac0002715 Rhodoferax ferrireducens T118 "Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) is a Gram-negative, motile, short rod with a single polar flagellum. It grows between pH 6.7 and 7.1, with a temperature range of 4-30 degrees C. The optimal growth temperature is 25 degrees Celsius. Electron donors utilized with Fe(III) as the sole electron acceptor included acetate, lactate, malate, propionate, pyruvate, succinate and benzoate. None of the compounds tested was fermented. Unlike other species in this genus, Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) seems not to be a phototroph and not to ferment fructose. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax ferrireducens T118 Negative Rod Yes 1 2 Facultative anaerobe 25 Mesophilic Multiple Free living No 338969 NC_007901.1 Bac0002716 Burkholderia ambifaria AMMD "The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility (adapted from http://genome.jgi-psf.org/buram/buram.home.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria AMMD Negative Rod No 1 2 Facultative aerobe 30 Mesophilic Multiple Free living Homo sapiens Nonsporulating 339670 NC_008392.1 Bac0002717 Actinobacillus succinogenes 130Z str. ATCC55618 "Actinobacillus succinogenes 130Z str. ATCC55618 is a Gram-negative, rod-shaped bacterium that typically exists in various cell arrangements including chains, pairs, and singles. This organism is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It demonstrates optimal growth at 37.0°C, which is consistent with the temperature of many mammalian hosts, indicating its adaptation to host-associated habitats.↵↵The facultative anaerobic nature of A. succinogenes suggests its potential versatility in metabolic pathways, enabling it to utilize different substrates depending on the oxygen availability in its environment. While specific ecological roles and interactions are not detailed here, the association of this bacterium with hosts may implicate it in various biological processes, possibly including fermentation or other metabolic activities that benefit the host.↵↵Given its cellular arrangement and growth conditions, A. succinogenes 130Z str. ATCC55618 may play a significant role in the microbial communities within host organisms, potentially influencing nutrient cycling and microbial dynamics. This adaptability highlights its importance in understanding microbial interactions in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus succinogenes Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs - Singles 339671 NC_009655.1 Bac0002718 Thalassovita mediterranea Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Thalassovita Thalassovita mediterranea 340021 CYSF00000000.1 Bac0002719 Thermoanaerobacter pseudethanolicus ATCC 33223 "Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) is the new name for Thermoanaerobacter ethanolicus 39E (as of 5/31/07). Thermoanaerobacter pseudoethanolicus, a thermophilic anaerobic bacterium, ferments a wide range of hexose and pentose sugars, as well as starch and pullulan, to ethanol. The organism expresses amylase and pullulanase enzymes under a variety of conditions, and the optimal growth temperature is approximately 65 degrees Celsius. It can also carry out iron reduction at elevated temperatures. Due to the ability to efficiently ferment pentoses, Thermoanaerobacter pseudoethanolicus has been proposed as a means for the production of industrial alcohol and has an approximate yield of 0.40 g of ethanol per g of xylose in batch or continuous culture. Economic analyses have shown that efficient fermentation of hemicellulosic sugars to ethanol by T. pseudoethanolicus or related Clostridium strains could have a large impact on the overall viability of the lignocellulosic bioconversion process. (EBI Integr8)" Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter pseudethanolicus ATCC 33223 Positive Rod Yes 1 1 Anaerobe 45 Thermophilic Aquatic Free living Sporulating No 340099 NC_010321.1 Bac0002720 Exiguobacterium mexicanum str. HUD Bacillati Bacillota Bacilli Caryophanales Family_XII Exiguobacterium Exiguobacterium mexicanum aerobic 340146 JQGI00000000.1 Bac0002721 Leucobacter luti Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter luti 340320 SHKI00000000.1 Bac0002722 Sphingobacterium sp. Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. 341027 DMKQ00000000.1 Bac0002723 Williamsia faeni str. DSM 45372 "Williamsia faeni str. DSM 45372 is a Gram-positive, spherical bacterium that exhibits spore-forming capabilities and thrives under aerobic conditions. This microbe has an optimal growth temperature of 29.0°C, indicating a preference for moderate warmth, which may reflect its adaptation to specific ecological niches. ↵↵The spherical morphology of Williamsia faeni suggests potential implications for its mode of reproduction and colonization strategies, as such shapes are often associated with a range of metabolic functions and interactions within microbial communities. The ability to form spores is particularly noteworthy, as it allows the organism to withstand unfavorable environmental conditions, thus enhancing its survival and persistence in diverse habitats.↵↵Given its aerobic nature, Williamsia faeni str. DSM 45372 likely plays a role in environments where oxygen is readily available, which may include soil and decaying organic matter. The combination of its Gram-positive cell structure and spore-forming ability positions it within a unique ecological framework, potentially influencing nutrient cycling and microbial dynamics in its surroundings. Further exploration of its ecological role could provide insights into its interactions with other microorganisms and its contributions to ecosystem functions." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia faeni Gram-positive sphere aerobic 29 mesophilic spore-forming 341202 QJJF00000000.1 Bac0002724 Agrococcus lahaulensis "Agrococcus lahaulensis is a Gram-positive, spore-forming coccus that thrives under microaerophilic conditions, with an optimal growth temperature of approximately 29.0°C. This microbe exhibits a spherical shape, characteristic of many cocci, and is notable for its ability to produce spores, which may contribute to its survival in fluctuating environmental conditions. ↵↵The microaerophilic nature of A. lahaulensis suggests that it is adapted to environments with reduced oxygen levels, which can be typical of certain soil or aquatic habitats. The optimal temperature for growth indicates a preference for moderate conditions, which may reflect its ecological niche. ↵↵Understanding the traits of A. lahaulensis can provide insights into its potential role in biogeochemical cycles, particularly in nutrient-rich environments where microaerophiles may play a significant part in organic matter decomposition and nutrient recycling. The spore-forming capability also suggests resilience against adverse conditions, allowing A. lahaulensis to persist in environments where other microorganisms might struggle. This resilience could be beneficial for ecological interactions, particularly in niches where sporulation could provide a competitive advantage in resource-limited settings." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus lahaulensis Gram-positive Cocci non-motile microaerophile 29 mesophilic spore-forming 341722 RBZZ00000000.1 Bac0002725 Paramagnetospirillum magneticum AMB-1 "Paramagnetospirillum magneticum AMB-1 is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and heterotrophic mode of energy acquisition. This organism predominantly inhabits aquatic environments, where it plays a role in the microbial community dynamics. As a microaerophile, P. magneticum AMB-1 requires reduced oxygen levels for optimal growth, which is typical for certain bacteria that thrive in specific niches within water bodies, such as sediments or stratified waters.↵↵The unique morphology of P. magneticum AMB-1, coupled with its ability to utilize organic compounds as an energy source, positions it as a significant player in biogeochemical cycles, particularly in the breakdown of organic matter in aquatic ecosystems. Additionally, its adaptation to microaerophilic conditions suggests a specialized ecological role in environments where oxygen concentrations fluctuate, allowing it to compete effectively with other microbial populations.↵↵This bacterium is noteworthy for its potential applications in biotechnology and environmental microbiology, as its metabolic capabilities may be leveraged for bioremediation or bioenergy production. Understanding the ecological functions of P. magneticum AMB-1 can provide insights into microbial interactions and the overall health of aquatic ecosystems, highlighting the importance of such microorganisms in maintaining ecological balance and nutrient cycling." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Magnetospirillaceae Paramagnetospirillum Paramagnetospirillum magneticum Negative Spirilla Yes 1 2 Microaerophilic Heterotroph Mesophilic Aquatic Free living 342108 NC_007626.1 Bac0002726 Ralstonia solanacearum UW551 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum Plant 342110 AAKL00000000.1 Bac0002727 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 "Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 is a Gram-positive, cocci-shaped bacterium that typically forms clusters or occurs as single cells. This microbe is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. It is notably associated with host environments, suggesting a potential role in the microbiota of various hosts.↵↵The clustering arrangement of S. saprophyticus is characteristic of the Staphylococcus genus, which is known for its ability to thrive in diverse habitats, often associated with animal and human hosts. The aerobic nature of this strain allows it to utilize oxygen for growth, contributing to its adaptability in environments where oxygen is available.↵↵S. saprophyticus, specifically this subspecies, is often studied in the context of its association with urinary tract infections, particularly in young women, highlighting its significance in clinical microbiology. However, its presence in host-associated environments also points to its potential role in the complex interactions within the microbiome. Understanding the ecological dynamics of S. saprophyticus may yield insights into its interactions with other microbial species and its contributions to host health or disease states, underscoring its relevance in both environmental and clinical microbiology." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living Clusters - Singles 342451 NZ_CP035296.1 Bac0002728 Pyrococcus sp. NA2 (NCBI BioProject: PRJNA66551) Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp. NA2 NA2 Cocci Yes Obligate anaerobic Hyperthermophilic Marine- Hydrothermal vent Free living Nonsporulating 342949 NC_015474.1 Bac0002729 Sodalis glossinidius str. morsitans "Sodalis glossinidius str. morsitans is a Gram-negative, rod-shaped bacterium that exhibits a microaerophilic oxygen requirement and is nonsporulating. This strain is typically associated with a host environment, suggesting a symbiotic or mutualistic relationship with its host. It thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions.↵↵As a member of the Sodalis genus, this strain may play a significant role in the physiology of its host, potentially influencing metabolic processes or providing essential nutrients. The bacteria’s microaerophilic nature suggests that it requires low levels of oxygen for its survival and growth, which could reflect adaptations to specific niches within its host's environment where oxygen is limited. ↵↵Given these traits, Sodalis glossinidius str. morsitans may contribute to the microbial community dynamics within its host, potentially impacting host health or fitness. The unique ecological insight provided by its adaptation to a microaerophilic lifestyle highlights the complex interactions that can occur in host-associated microbial communities, where oxygen availability can shape microbial diversity and functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bruguierivoracaceae Sodalis Sodalis glossinidius Negative Rod No 1 2 Microaerophilic 25 Mesophilic HostAssociated Symbiotic Nonsporulating 343509 NC_007714.1 Bac0002730 Shigella boydii CDC 3083-94 str. BS512 "Shigella boydii CDC 3083-94 str. BS512 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain optimally thrives at a temperature of 37.0°C, aligning with the physiological conditions of its host-associated habitat. As a chemoorganotroph, it derives its energy from organic compounds, which reflects its adaptation to environments rich in host-derived nutrients. ↵↵S. boydii is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic conditions, which may enhance its versatility in colonizing various niches within the host. The combination of these traits suggests that S. boydii has evolved to effectively exploit the microenvironments present in the gastrointestinal tract of its hosts. Understanding the metabolic capabilities and environmental adaptability of this strain could provide insights into its ecological role and potential implications for host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella boydii Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 344609 NC_010656.1 Bac0002731 Escherichia coli 53638 "Escherichia coli 53638 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. E. coli 53638 demonstrates optimal growth at a temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts. ↵↵This strain's habitat is primarily host-associated, indicating its prevalence in biological systems, particularly within the intestines of mammals. The ability to adapt to varying oxygen levels suggests that E. coli 53638 could play a versatile role in the microbial ecosystem, potentially contributing to processes such as fermentation and nutrient cycling within its host. ↵↵Moreover, the specific pairing and single-cell arrangement may influence its interactions with other microbial species and its host, possibly affecting its ecological niche or its role in symbiotic relationships. Understanding the growth conditions and cellular arrangement of E. coli 53638 can provide insights into its functional capacities and interactions within the microbiome, illuminating its potential contributions to host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 344610 NC_010720.1 Bac0002732 Sphingomonas dokdonensis str. DSM 21029 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas dokdonensis 344880 NBBI00000000.1 Bac0002733 Vibrio cholerae MO10 "Vibrio cholerae MO10 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is categorized as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, which allows it to thrive in diverse environments. V. cholerae MO10 is a heterotrophic organism, relying on organic compounds as its energy source, which further indicates its adaptability to various habitats where organic matter is available.↵↵Optimal growth for Vibrio cholerae MO10 occurs at a temperature of 20.0°C, suggesting a potential preference for cooler aquatic environments, as many Vibrio species are commonly found in marine and estuarine ecosystems. The ability to survive in multiple habitats underscores the ecological versatility of this strain within different environmental contexts.↵↵Understanding the traits of Vibrio cholerae MO10 can provide insights into its ecological role, particularly in nutrient cycling within aquatic systems. Its heterotrophic nature and facultative anaerobic metabolism may contribute to the breakdown of organic materials, thereby playing a significant role in the microbial community dynamics of its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 345072 AAKF00000000.3 Bac0002734 Vibrio cholerae RC385 "Vibrio cholerae RC385 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, V. cholerae RC385 relies on organic compounds for its energy needs, which may influence its ecological interactions and adaptability in diverse habitats.↵↵The optimal growth temperature for this strain is around 20°C, suggesting a preference for cooler environments, which may reflect its ecological niches in aquatic systems or sediment. The ability to inhabit multiple habitats indicates a versatile lifestyle that may include both freshwater and marine ecosystems. The combination of these traits highlights the potential for V. cholerae RC385 to play a role in nutrient cycling within its environment, as well as its possible contributions to microbial community dynamics.↵↵Given its morphological and physiological characteristics, V. cholerae RC385 may serve as an important model for studying the adaptability of bacteria to varying environmental conditions, particularly in cooler aquatic habitats. This adaptability underscores the ecological significance of this strain within its native ecosystems, where it may interact with other microbial species and influence local biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 345074 AAKH00000000.3 Bac0002735 Weizmannia coagulans 36D1 "Weizmannia coagulans 36D1 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, which allows it to survive in various environmental conditions. This species exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources. W. coagulans 36D1 thrives optimally at a temperature of 60.0°C, indicating a preference for thermophilic environments, where it can efficiently carry out its metabolic processes. ↵↵As a facultative anaerobe, W. coagulans 36D1 is capable of growing in both the presence and absence of oxygen, suggesting versatility in its ecological niches. The ability to sporulate further enhances its survival in fluctuating environments, allowing it to withstand harsh conditions that may occur in its habitat.↵↵The adaptability of W. coagulans 36D1 to high temperatures and variable oxygen levels may be indicative of its role in biogeochemical cycles in thermophilic ecosystems, potentially contributing to organic matter decomposition and nutrient cycling in environments such as hot springs or thermally impacted soils. This capability underscores the importance of W. coagulans 36D1 in understanding microbial diversity and functionality within extreme habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia coagulans Positive Rod Yes 1 Facultative anaerobe 60 Chemoheterotroph Mesophilic Multiple Sporulating 345219 NC_016023.1 Bac0002736 Luteibacter yeojuensis str. SU11 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter yeojuensis aerobic 345309 JZRB00000000.1 Bac0002737 Kutzneria sp. 744 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kutzneria Kutzneria sp. 744 345341 ACQP00000000.1 Bac0002738 Geobacter pickeringii str. G13 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter pickeringii anaerobic 345632 NZ_CP009788.1 Bac0002739 Salegentibacter agarivorans "Salegentibacter agarivorans is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. As a non-spore-forming organism, it relies on other survival mechanisms to endure environmental stressors. The organism is characterized by its unique adaptation to marine environments, particularly in relation to its agar-degrading capabilities, which suggests a specialized role in the degradation of algal biomass in coastal ecosystems.↵↵The morphology and growth requirements of S. agarivorans indicate its potential importance in nutrient cycling within marine habitats, especially considering its ability to utilize agar as a carbon source. This metabolic feature may facilitate the breakdown of complex polysaccharides found in algal cell walls, thereby contributing to the turnover of organic matter and supporting the overall health of marine food webs. The study of Salegentibacter agarivorans may provide valuable insights into the microbial ecology of marine environments, particularly regarding the interactions between microorganisms and the organic substrates derived from algal blooms." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter agarivorans Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 345907 FOOH00000000.1 Bac0002740 Zobellella denitrificans str. F13-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Zobellella Zobellella denitrificans 347534 NZ_CP012621.1 Bac0002741 Rhizobium etli CFN 42 str. CFN42 "Rhizobium etli CFN 42 str. CFN42 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This microbe is predominantly found in host-associated environments, indicating a symbiotic relationship with its host, which is commonly legumes. ↵↵As a member of the Rhizobium genus, R. etli plays a crucial role in nitrogen fixation, a process that converts atmospheric nitrogen into a form that plants can utilize. This characteristic is particularly significant in agricultural contexts, where R. etli enhances soil fertility and supports plant growth by improving nutrient availability. The aerobic nature of this bacterium suggests it requires oxygen for its metabolic processes, which aligns with its habitat that typically provides sufficient oxygen levels.↵↵In addition to its agricultural importance, R. etli CFN 42 str. CFN42 may also offer insights into microbial interactions within host-associated ecosystems. Understanding its mechanisms of symbiosis and nitrogen fixation can contribute to sustainable agricultural practices and help in the development of biofertilizers. The unique traits of this strain underscore its potential utility in enhancing crop yields while reducing the reliance on chemical fertilizers, thereby promoting more environmentally friendly farming practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Singles 347834 NC_007764.1 Bac0002742 Acinetobacter sp. AG1 str. Ag1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. AG1 348388 LBMZ00000000.1 Bac0002743 Natronomonas pharaonis DSM 2160 "Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) is an extremely haloalkaliphilic archaeon which was isolated from salt-saturated lakes of pH 11. It grows optimally at pH 8.5 in 3.5 M NaCL. Its genome consists of a chromosome and two plasmids. Twenty percent of N.pharaonis proteins have no homologs in other species. It possesses the complete set of enzymes for the biosynthesis of amino acids and coenzymes. It is probably not able to use sugar because it lacks key enzymes of glycolytic pathways. It has transporters for diverse nitrogen souces such as ammonium, urea, nitrite/nitrate in order to cope with reduced levels of ammonium ions resulting from extreme pH conditions. The Tat pathway might be extensively used not only for coenzyme-containing redox components such as halocyanins but also for the export of non-redox proteins. Lipoproteins make up one third of the predicted secretome and seem to be translocated via the Tat pathway. It possesses proteins with high N- and C-terminal similarity to halophilic cell surface glycoproteins forming regular S-layer cell envelopes, however, instead of a typical S-layer, it could form a more complex cell envelope with various glycoprotein species. It harbors a single blue-light photoreceptor that is very similar to the blue-light photoreceptor from Halobacterium. (HAMAP: NATPD)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas pharaonis DSM 2160 Yes 1 1 Aerobe Phototroph Mesophilic Aquatic Free living No 348780 NC_007428.1 Bac0002744 Rhizobium favelukesii Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium favelukesii 348824 CBYB000000000.1 Bac0002745 Cereibacter sphaeroides ATCC 17029 "Cereibacter sphaeroides ATCC 17029 is a Gram-negative, rod-shaped bacterium that typically arranges itself in chains. This microbe exhibits versatility in its energy acquisition, being photosynthetic and capable of utilizing both aerobic and anaerobic metabolic pathways, which suggests a remarkable adaptability to varying environmental conditions. The optimal growth temperature for C. sphaeroides ATCC 17029 is 25.0°C, indicating a preference for moderate temperature environments.↵↵The ability of C. sphaeroides to thrive in multiple habitats highlights its ecological flexibility, allowing it to occupy diverse niches. This versatility in energy metabolism may confer advantages in fluctuating environments where light availability and oxygen levels can vary. Furthermore, the photosynthetic capability of this organism suggests its role in primary production within its ecosystems, potentially contributing to local biogeochemical cycles. Understanding the specific ecological roles of C. sphaeroides ATCC 17029 may provide insights into its interactions within microbial communities and its contributions to nutrient cycling in various environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 349101 NC_009049.1 Bac0002746 Halorhodospira halophila SL1 "Halorhodospira (formely Ectothiorhodospira) halophila (strain DSM244 / SL1) is an extremely halophilic purple phototrophic Gram-negative bacterium phylogenetically associated with the gamma subdivision of the Proteobacteria. This is one of the most halophilic eubacteria known. It produces organic solutes such as glycine betaine, ectoine, and trehalose to balance the osmotic pressure. This organism oxidizes sulfide to sulfur, which is deposited outside the cell and further oxidized to sulfate. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Halorhodospira Halorhodospira halophila SL1 Negative Spirilla Yes 1 2 Anaerobe Phototroph - Photosynthetic Mesophilic Fresh water - Mud Free living No 349124 NC_008789.1 Bac0002747 Acidiphilium cryptum JF-5 "Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidiphilium Acidiphilium cryptum JF-5 Negative Rod Yes 1 2 Aerobe 35 Heterotroph Mesophilic Multiple Free living non-spore-forming No 349163 NC_009472.1 Bac0002748 Methanothrix thermoacetophila PT Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix thermoacetophila No 1 1 Anaerobe Lithotroph Thermophilic Fresh water - Rice paddies - Sediment Free living Nonsporulating 349307 NC_008553.1 Bac0002749 Krasilnikovia cinnamomea str. DSM 45162 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Krasilnikovia Krasilnikovia cinnamomea 349313 SHKY00000000.1 Bac0002750 Akkermansia muciniphila ATCC BAA-835 "Akkermansia muciniphila ATCC BAA-835 is a mesophilic, chemoheterotrophic, Gram-negative bacterium that exhibits a rod-shaped morphology and is primarily found in the intestinal mucosa of various mammals, including humans. This microbe thrives in the oxygen-reduced environments of the gut, classified as an obligate anaerobe, which allows it to effectively colonize the mucosal layer and interact with the host's immune system. As a chemoheterotroph, A. muciniphila derives its energy from organic compounds, primarily utilizing mucin as its main carbon source. Mucin, a glycoprotein component of mucus, serves as both a nutrient and a structural component in the gut environment, which A. muciniphila actively degrades. This metabolic capability not only facilitates its growth but also contributes to the maintenance of gut health by supporting the integrity of the mucosal barrier and promoting the growth of other beneficial microbes. The Gram-negative cell wall structure of A. muciniphila is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which plays a crucial role in its resistance to certain antibiotics and influences its interactions with the host's immune system. Its rod shape allows for increased surface area, facilitating nutrient absorption and interactions with the gut lining. Akkermansia muciniphila has garnered attention for its potential health benefits, including its role in obesity management, metabolic syndrome, and overall gut health. Research indicates that higher levels of this microbe are associated with improved metabolic profiles and reduced inflammation. Its ability to modulate the gut microbiome and enhance the mucosal barrier makes it a promising candidate for probiotic applications and therapeutic interventions aimed at improving gut health and preventing various diseases." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila ATCC BAA-835 Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating No 349741 NC_010655.1 Bac0002751 Clostridium sp. BL-8 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. BL-8 349938 LZZL00000000.1 Bac0002752 Mycolicibacterium vanbaalenii PYR-1 "Mycolicibacterium vanbaalenii PYR-1 is a Gram-positive, rod-shaped bacterium characterized by its single-cell arrangement and its classification as a chemoorganotroph. This organism thrives optimally at a temperature of 24.0°C, suggesting a preference for moderate environmental conditions. As an aerobic microbe, M. vanbaalenii PYR-1 requires oxygen for its metabolic processes, which aligns with its habitat in sediment environments where oxygen is typically available. ↵↵The ability of this bacterium to utilize organic compounds for energy highlights its role in biogeochemical cycles within its sedimentary habitat. This trait may facilitate the breakdown of complex organic materials, contributing to nutrient cycling and the maintenance of sediment health. Given its ecological niche, M. vanbaalenii PYR-1 may also play a significant role in the degradation of pollutants in sediment, which could be of interest for bioremediation strategies.↵↵Overall, the physiological traits of Mycolicibacterium vanbaalenii PYR-1 indicate it is well-adapted to its sedimentary environment, where it likely participates actively in the complex interactions of microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium austroafricanum Positive Rod No 1 1 Aerobe 24 Chemoorganotroph Mesophilic Sediment Free living Singles 350058 NC_008726.1 Bac0002753 Alkaliphilus oremlandii OhILAs "Alkaliphilus oremlandii (strain OhILAs) is a versatile strict anaerobic, spore-forming, mesophillic Gram-positive bacterium phylogenetically associated with the Firmicutes. Clostridium sp. OhILAs has been renamed to Alkaliphilus oremlandii OhILAs. A. oremlandii was isolated from sediments of the Ohio River (Pittsburgh, PA). This bacterium can ferment glycerol, fructose, and lactate, as well as respire arsenate and thiosulfate. It is one of four organisms that are being sequenced by the JGI as part of the ""Arsenic Genome Project"" to further elucidate the microbial transformation of arsenic. Although it grows optimally at pH 8.4, 16S rRNA gene sequence analysis indicated it is an Alkaliphilus species. Alkaliphilus oremlandii OhILAs is unique in that it can tolerate high arsenate concentrations (>40 mM) and readily degrades the organoarsenical 3-nitro-4-hydroxy benzene arsonic acid (roxarsone) within 48 hours. Thus it has great potential for use in the remediation of organoarsenicals in poultry waste and a model organism to investigate the process. (PMID: 17328188). (EBI Integr8)" Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Alkaliphilus Alkaliphilus oremlandii OhILAs Positive Rod Yes 1 1 Anaerobe Mesophilic Aquatic Free living Sporulating No 350688 NC_009922.1 Bac0002754 Burkholderia dolosa AU0158 "Burkholderia dolosa AU0158 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic mode of respiration. This organism is part of the Burkholderia genus, which is known for its diverse metabolic capabilities and adaptability to various environments. The rod shape of B. dolosa AU0158 is characteristic of many members within its genus, which often display a range of morphologies.↵↵As an aerobic bacterium, B. dolosa AU0158 requires oxygen for its growth and metabolic processes, implicating its potential presence in environments rich in oxygen. This trait may confer advantages in ecological niches where oxygen levels fluctuate, allowing for competitive survival against other microorganisms. ↵↵Research on the Burkholderia genus has highlighted its ability to thrive in various ecological contexts, including soil and water systems, where it can play significant roles in nutrient cycling. The adaptability of B. dolosa AU0158 to aerobic conditions suggests that it may be involved in biogeochemical processes, contributing to the degradation of organic matter and influencing microbial community dynamics. Overall, the traits of B. dolosa AU0158 position it as a notable member of the microbial ecosystem, potentially impacting environmental health and stability." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia dolosa Gram-negative rod aerobic 350701 NZ_CP009793.1 Bac0002755 Methanocella arvoryzae MRE50 Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales Methanocellaceae Methanocella Methanocella arvoryzae Mesophilic HostAssociated 351160 NC_009464.1 Bac0002756 Polynucleobacter cosmopolitanus "Polynucleobacter cosmopolitanus is a rod-shaped bacterium known for its aerobic metabolism and ability to utilize organic compounds as an energy source, functioning as both an organotroph and chemotroph. This microbe is characterized by its capacity to thrive in oxygen-rich environments, reflecting its requirement for aerobic conditions to support its metabolic processes. As a member of the diverse microbial community, P. cosmopolitanus plays a significant role in the cycling of organic matter, contributing to the overall health and stability of its ecological niche.↵↵The presence of P. cosmopolitanus in various environments suggests a broad distribution, which may be indicative of its adaptability to different ecological contexts. Its metabolic versatility implies a potential role in nutrient cycling, particularly in aquatic systems where organic substrates are abundant. This adaptability may also allow P. cosmopolitanus to occupy various ecological niches, further enhancing its chances of survival and proliferation in response to changing environmental conditions. Understanding the ecological roles of such microorganisms is crucial for appreciating their contributions to ecosystem dynamics, particularly in relation to organic matter decomposition and nutrient availability." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter cosmopolitanus rod non-motile aerobic organotroph; chemotroph 351345 NJGG00000000.1 Bac0002757 Geotalea uraniireducens Rf4 "Geotalea uraniireducens Rf4 is a Gram-negative, rod-shaped bacterium that exhibits a microaerophilic lifestyle, thriving in environments with limited oxygen availability. This organism typically exists as single cells rather than in clusters or chains, indicating a solitary growth habit. Geotalea uraniireducens Rf4 is classified as a chemolithotroph, utilizing inorganic compounds as its primary energy source, which allows it to exploit a variety of habitats.↵↵The ability of Geotalea uraniireducens Rf4 to oxidize inorganic substrates for energy may contribute to biogeochemical cycling within its environments. Its microaerophilic nature suggests a specialized adaptation to niches where oxygen levels are low but not entirely absent, potentially enabling it to occupy ecological roles in diverse settings, such as sediments or subsurface soils. The unique metabolic capabilities of this bacterium may play a crucial role in the reduction of uranium and other metal ions, which could have implications for bioremediation strategies in contaminated environments. Understanding the physiology and ecological interactions of Geotalea uraniireducens Rf4 may provide insights into the microbial processes that govern nutrient cycling and pollutant degradation in microaerophilic niches." Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens Negative Rod No 1 2 Microaerophilic Chemolithotroph Mesophilic Multiple Free living Singles 351605 NC_009483.1 Bac0002758 Acidothermus cellulolyticus 11B Acidothermus cellulolyticus strain 11B. This strain (11B; ATCC 43068) is the type strain for the species. The genome sequence from this organism will provide information on the regulation and production of potentially useful enzymes. (NCBI BioProject: bp_list[1]) Bacillati Actinomycetota Actinomycetes Acidothermales Acidothermaceae Acidothermus Acidothermus cellulolyticus 11B Positive Yes 1 1 Aerobe 58 Thermophilic Aquatic Free living Sporulating No 351607 NC_008578.1 Bac0002759 Caldicellulosiruptor saccharolyticus DSM 8903 "Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) is a thermophilic (70 degrees Celsius), strictly anaerobic asporogenous bacterium phylogenetically associated with the Firmicutes. This organism was isolated from a thermal spring in New Zealand. It hydrolyses a variety of polymeric carbohydrates (cellulose, hemicellulose, pectin, a -glucan (starch, glycogen), b-glucan (lichenan, laminarin), guar gum) to acetate, lactate, hydrogen and CO2. Trace amounts of ethanol are formed as well. Phylogenetic analysis showed that it constitutes a novel lineage within the Bacillus/Clostridium subphylum of the Gram-positive bacteria. According to a recent study by the US Department of Energy and the National Renewable Energy Laboratory (DOE/NREL), the desired future biofuel producer would have several features that distinguish it from currently used microorganisms: (i) high yield and low product inhibition, (ii) simultaneous utilisation of sugars (cellulose, hemicellulose, pectin), and (iii) growth at elevated temperatures: robust thermophilic organisms, with a decreased risk of contamination. A bacterium that meets all these criteria is Caldicellulosiruptor saccharolyticus, which is anticipated to play an important role in the development of renewable energy. This thermophilic bacterium efficiently converts an extraordinarily wide range of biomass components to the potential energy source hydrogen. Importantly, pilot fermentation experiments revealed the simultaneous degradation of glucose and xylose. Comparison of its genome with that of related microbes, also with potential for energy production, is expected to result in a gain of fundamental insight in the metabolic capacity and its regulation. Follow-up studies will be aimed at exploiting that knowledge for the engineering of an optimised microbial energy production system. (EBI Integr8)" Bacillati Bacillota Clostridia Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor saccharolyticus DSM 8903 Positive Rod Yes 1 1 Anaerobe Thermophilic Specialized Free living Pairs - Singles Nonsporulating No 351627 NC_009437.1 Bac0002760 Xenorhabdus doucetiae str. FRM16 = DSM 17909 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus doucetiae 351671 NZ_FO704549.1 Bac0002761 Xenorhabdus cabanillasii str. DSM 17905 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus cabanillasii 351673 QTUB00000000.1 Bac0002762 Xenorhabdus miraniensis str. DSM 17902 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus miraniensis 351674 NITZ00000000.1 Bac0002763 Streptomyces sp. AcH 505 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AcH 505 352211 JTIY00000000.1 Bac0002764 Campylobacter jejuni subsp. jejuni 81-176 "Campylobacter jejuni subsp. jejuni 81-176 is a gram-negative, spiral-shaped bacterium that thrives optimally at temperatures between 37°C and 42°C. As a chemoheterotroph, it derives energy from organic compounds, while its microaerophilic nature allows it to flourish in environments with reduced oxygen levels, typically around 5% O2 and enriched CO2.This subspecies is primarily found in the intestines of warm-blooded animals, especially poultry, making it a common contaminant in undercooked or raw meat. Its unique spiral shape, along with its motility facilitated by a single polar flagellum, contributes to its ability to colonize the gastrointestinal tract of hosts effectively. The organism is also adapted to survive in diverse environments, including soil and water, which can become reservoirs for transmission to humans.In terms of pathogenicity, Campylobacter jejuni is one of the leading causes of bacterial gastroenteritis worldwide. Upon ingestion, the bacterium can cause severe diarrhea, abdominal pain, and fever, often lasting for several days. Its virulence factors include adhesion molecules and toxins that help it evade the host's immune response and establish infection. Research into Campylobacter jejuni has significant implications for food safety and public health, particularly due to its widespread presence in the food chain. Furthermore, studies on this bacterium have provided insights into its genomic makeup, revealing potential genetic determinants of virulence and antibiotic resistance. This knowledge is vital for developing effective prevention and treatment strategies." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni 81-176 Negative Spirilla No 1 2 Microaerophilic 0 Heterotroph Mesophilic Multiple Free living Homo sapiens Chains - Singles Nonsporulating Yes 354242 NC_008787.1 Bac0002765 Pseudochrobactrum asaccharolyticum str. DSM 25619 "Pseudochrobactrum asaccharolyticum str. DSM 25619 is a Gram-negative, non-spore-forming rod-shaped bacterium. This species is characterized by its unique metabolic capabilities, particularly its inability to utilize saccharolytic substrates, which distinguishes it from other members of the genus Pseudochrobactrum. The Gram-negative nature of this bacterium suggests the presence of an outer membrane containing lipopolysaccharides, contributing to its structural integrity and potential responses to environmental stressors.↵↵The rod shape of P. asaccharolyticum str. DSM 25619 may influence its motility and interaction with the surrounding environment, which is particularly relevant in microbial communities where spatial arrangement and physical characteristics can affect ecological interactions. The non-spore-forming trait indicates that this bacterium does not produce spores for survival under adverse conditions, suggesting it may rely on other mechanisms for resilience and adaptation.↵↵Given these traits, Pseudochrobactrum asaccharolyticum str. DSM 25619 may play a specific role in its ecological niche, potentially engaging in interactions with other microorganisms that utilize different metabolic pathways. This relationship may allow for the recycling of organic matter and nutrients in its environment, highlighting the importance of such bacteria in maintaining microbial diversity and ecosystem function. Understanding the metabolic and structural characteristics of P. asaccharolyticum str. DSM 25619 may provide insights into its ecological role and functional significance within microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Pseudochrobactrum Pseudochrobactrum asaccharolyticum Gram-negative rod non-motile non-spore-forming 354351 QNRH00000000.1 Bac0002766 Streptomyces sp. Tu6071 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Tu6071 355249 AFHJ00000000.1 Bac0002767 Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 "Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 is a Gram-negative, nonsporulating bacterium characterized by its spirilla shape and aerobic metabolism. This microbe is primarily associated with host organisms, indicating a distinct ecological niche that may involve interactions with specific hosts, likely within the animal kingdom. ↵↵As a member of the genus Leptospira, this strain is part of a group of spirochete bacteria known for their elongated, spiral morphology, which is conducive to motility in viscous environments. The aerobic nature of L. borgpetersenii serovar Hardjo-bovis str. JB197 suggests that it thrives in oxygen-rich environments, which may be particularly relevant in the context of its habitat as it interacts with host tissues where oxygen is readily available.↵↵The nonsporulating trait implies that this strain does not form spores as a survival mechanism, potentially making it vulnerable to environmental stressors outside of its host. Understanding the specific host associations of this strain could provide insights into its ecological role, as well as its potential implications in veterinary microbiology. Thus, the relationship between L. borgpetersenii serovar Hardjo-bovis str. JB197 and its host may illuminate important aspects of microbial-host dynamics and the overall health of the host organism." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 355277 NC_008511.1 Bac0002768 Chryseobacterium wanjuense "Chryseobacterium wanjuense is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This species thrives optimally at a temperature of 29.0 °C, indicating a preference for moderate thermal environments. The non-spore-forming nature of C. wanjuense suggests that it may rely on other survival strategies under adverse conditions, given that spore formation is often a key survival mechanism in bacteria facing environmental stress. ↵↵As a member of the Chryseobacterium genus, C. wanjuense is likely to possess traits that facilitate its survival in various ecological niches, particularly in environments rich in organic matter. Its aerobic requirement suggests a role in the decomposition of organic compounds, potentially contributing to nutrient cycling in its ecosystem. Understanding the physiological characteristics of C. wanjuense can provide insights into its ecological roles, particularly in soil or aquatic environments where it may interact with other microbial communities. Further research could elucidate its specific contributions to biogeochemical processes and its relationships within microbial consortia." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium wanjuense Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 356305 FOIU00000000.1 Bac0002769 Albimonas donghaensis "Albimonas donghaensis is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that may influence its interactions with other microorganisms and its environmental adaptability.↵↵The aerobic nature of A. donghaensis implies that it relies on oxygen for its metabolic processes, which may contribute to its ecological niche in oxygen-rich environments. The inability to form spores suggests a specific reproductive strategy, limiting its ability to withstand extreme conditions typically associated with sporulation in other bacterial taxa.↵↵Understanding the physiological traits of A. donghaensis is crucial for elucidating its potential roles in its native habitat, particularly in relation to its metabolic capabilities and interactions with other microbial communities. The optimal growth temperature indicates that it may be well-suited to environments such as marine ecosystems, where temperatures are often mild. This adaptation could suggest a role in nutrient cycling within these ecosystems, emphasizing the importance of A. donghaensis in maintaining ecological balance in its environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Albimonas Albimonas donghaensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 356660 FNMZ00000000.1 Bac0002770 Azoarcus sp. DN11 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Azoarcus Azoarcus sp. DN11 356837 NZ_CP021731.1 Bac0002771 Micromonospora coxensis Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora coxensis 356852 NZ_LT607753.1 Bac0002772 Orientia tsutsugamushi str. Boryong "Orientia tsutsugamushi (previously called Rickettsia tsutsugamushi) is an obligate intracellular rickettsia living in the salivary glands of trombiculid mites. The bacterium is maternally inherited in mites and is transmitted to humans during larval feeding. Orientia tsutsugamushi is the causative agent of scrub typhus, a disease characterized by fever, rash, eschar, pneumonitis meningitis and disseminated intravascular coagulation. If left untreated, it can lead to sever multiple organ failure. The mortality rate from scrub typhus in untreated patients ranges from 1% to 40%. During World War II, Allied forces suffered more fatalities due to this disease than as a direct consequence of the fighting in South-East Asia. Scrub typhus is restricted to a well-defined area that extends from Eastern Russia and Northern Japan in the north and Northern Australia in the south to Pakistan and Afghanistan in the west. Orientia tsutsugamushi (strain Boryong) was isolated from a Korean patient. Its genome is made up of a single circular chromosome of 2,127,051 base pairs and is the largest among the genomes of Rickettsiales sequenced to date. A unique feature of Orientia tsutsugamushi is the presence of 4197 identical repeats of more than 200 bp, which represents 37% of the genome. In total, 1146 mobile genetic elements, representing 40% of the genome, were identified. Exceptional is also the presence of 359 tra genes for conjugative Type IV Secretion Systems compared to the 4 tra genes of R. felis and to the unique tra gene of R. bellii. Located within or in the immediate vicinity of the tra clusters are more than 200 genes encoding paralogous proteins putatively involved signaling and host-cell interaction processes. 414 transposases were identified, that belong to 5 families, approximately 86% of which are pseudogenes. (HAMAP: ORITB)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Orientia Orientia tsutsugamushi Boryong Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Homo sapiens Yes 357244 NC_009488.1 Bac0002773 Phocaeicola dorei "Phocaeicola dorei is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, primarily in anaerobic environments. This species has an optimal growth temperature of 37.0°C, indicating a preference for body temperature conditions that may facilitate its presence in various host-associated environments. ↵↵P. dorei has been identified in multiple habitats, suggesting a degree of ecological versatility, although specific habitats have not been detailed in the available data. Its anaerobic requirement indicates that it likely plays a role in anaerobic metabolic processes, which may include fermentation or other metabolic pathways that do not rely on oxygen.↵↵Given its anaerobic nature and ability to inhabit diverse environments, P. dorei may contribute to the complex microbial communities found in the gastrointestinal tracts of various organisms. This highlights the potential for significant interactions with host metabolism and nutrient cycling within those ecosystems. Further studies are warranted to elucidate the specific ecological roles and interactions of P. dorei in its native habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 357276 QRZL00000000.1 Bac0002774 Burkholderia pseudomallei 1106a "Burkholderia pseudomallei is an opportunistic pathogen and a common cause of human pneumonia and fatal bacteremias in endemic areas. Clinical manifestations of B. pseudomallei infection, a disease known as melioidosis, vary greatly from an asymptomatic state, to benign pneumonitis, to acute or chronic pneumonia, or to overwhelming septicemia. Treatment of melioidosis can involve up to nine months of antibiotic therapy, and relapse of the disease is common. The latency period of the organism may vary from two days to 26 years. It is endemic in Southeast Asia and northern Australia, but has also been found in Africa, the Middle East, Europe, Central and South America. Besides humans, melioidosis can affect animals such as sheep, goats, horses, swine, dogs and cats. Transmission occurs by contact with contaminated soil and water, through skin abrasions or inhalation of dust. In northeastern Thailand, B.pseudomallei accounts for 20% of bacterial septicaemias (adapted from http://www.cdc.gov/ncidod/dbmd/diseaseinfo/melioidosis_g.htm). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei 1106a Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living Homo sapiens Yes 357348 NC_009078.1 Bac0002775 Paenibacillus sp. F4 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. F4 357385 POVS00000000.1 Bac0002776 Caulobacter sp. D5 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. D5 357400 QHJY00000000.1 Bac0002777 Acidovorax sp. KKS102 "Acidovorax sp. KKS102 is a Gram-negative bacterium known for its remarkable capacity to degrade hydrocarbons, making it a notable member of the microbial community in soil environments. As a chemoheterotroph, Acidovorax sp. KKS102 utilizes organic compounds as both carbon and energy sources, allowing it to thrive in nutrient-rich soil conditions, particularly in areas contaminated with organic pollutants.This microbe is nonsporulating, which indicates that it does not form spores to withstand harsh conditions, but instead relies on its metabolic versatility to navigate environmental changes. Although specific details regarding its optimal temperature and oxygen requirements remain unspecified, its ecological niche suggests it is well adapted to the fluctuating conditions often found in soil habitats. The ability of Acidovorax sp. KKS102 to break down hydrocarbons positions it as a potential agent for bioremediation, a process that harnesses microbial metabolism to clean up contaminated environments. Its presence in soils tainted with petroleum and other hydrocarbons may facilitate the restoration of these ecosystems, promoting a healthier balance of soil microbiota and enhancing soil quality. By participating in the degradation of environmental pollutants, Acidovorax sp. KKS102 not only contributes to soil health but also underscores the indispensable role of soil microbiomes in ecological resilience and sustainability." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. KKS102 Negative No 1 Chemoheterotroph Soil Nonsporulating 358220 NC_018708.1 Bac0002778 Enterocloster aldenensis "Enterocloster aldenensis is a Gram-positive, nonsporulating bacterium classified within the intestinal microflora of animals. As a chemoheterotroph, it derives its energy from organic compounds, reflecting its adaptation to a nutrient-rich environment typical of the intestinal tract. ↵↵The absence of sporulation in Enterocloster aldenensis suggests that it relies on stable environmental conditions for survival and reproduction, as the ability to form spores is often a strategy employed by bacteria to endure unfavorable conditions. Its presence in animal intestines highlights its potential role in the complex microbial community that contributes to the host's digestive processes and overall gut health.↵↵Understanding the specific interactions of Enterocloster aldenensis within the intestinal microbiome could shed light on its contributions to nutrient metabolism and symbiotic relationships with the host. Further research may elucidate its functional role and the implications for gut ecology, particularly in the context of maintaining microbial diversity and stability in the gastrointestinal environment." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster aldenensis Positive No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 358742 QVEX00000000.1 Bac0002779 Brucella abortus 2308 "Brucella abortus 2308 is a Gram-negative, rod-shaped bacterium that typically arranges itself in chains, pairs, or single cells. This organism is facultatively aerobic, allowing it to thrive in varying oxygen conditions. It has an optimal growth temperature of 37.0°C, which aligns with the body temperature of many mammalian hosts, indicating its adaptation for a host-associated habitat. ↵↵B. abortus is known for its association with livestock and is particularly significant in veterinary microbiology due to its role in causing brucellosis, although specific pathogenicity details are not addressed here. Its ability to survive in diverse environments, coupled with its facultative aerobic metabolism, suggests a versatile lifestyle that enables it to persist in host tissues and potentially evade the immune response.↵↵The ecological role of B. abortus 2308 extends beyond its pathogenic potential; it may also contribute to the dynamics of microbial communities in host-associated ecosystems. Understanding its interactions within these communities could provide insights into the broader implications of brucellosis in agricultural settings and its influence on animal health and productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella abortus Negative Rod No 1 2 Facultative aerobe 37 Mesophilic HostAssociated Free living Chains - Pairs - Singles 359391 NC_007618.1 Bac0002780 Xanthomonas oryzae pv. oryzae PXO99A "The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.Xanthomonas oryzae is a Gram-negative bacterium and is the causative agent of bacterial blight on rice. Bacterial blight is a major disease in rice producing countries where high-yielding rice cultivars are often highly susceptible to it. It is a vascular disease resulting in tannish-gray to white lesions along the leaf veins. In severely infested fields, bacterial blight can cause yield losses up to 50%. When it infects at the seedling stage, it causes a syndrome known as kresek, which can lead to nearly complete crop loss.PXO99A is a 5-azacytidine-resistant derivative of PXO99, which was isolated in the Philippines. Genotypically PXO99 is more similar to isolates from Nepal and India than to other Philippine isolates. In contrast to other fully-sequenced X.oryzae pv. oryzae strains MAFF and KACC, PXO99A is virulent toward a large number of rice varieties representing diverse genetic sources of resistance. Due to its amenability to genetic analysis, and its relatively broad cultivar specificity, PXO99A has been the focus of numerous studies of the molecular basis of bacterial blight and blight resistance (adapted from PubMed 18452608). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae PXO99A Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living No 360094 NC_010717.2 Bac0002781 Yersinia pestis Antiqua "Yersinia spp. are responsible for disease syndromes ranging from gastroenteritis to plague. Y. pestis is the cause of the plague and is actually catagorized into three subtypes or biovars; Antiqua, Medievalis, and Orientalis, each associated with a major pandemic. Y. pestis strand KIM belongs to biovar Mediaevalis while strand CO92 is in biovar Orientalis. Biovar Mediaevalis is thought to of descended from the bacteria that caused the second pandemic (the Black Death), while biovar Orientalis bacteria are responsible for the current pandemic (modern plague).It is believed that Y. pestis is a clone that evolved from Y. pseudotuberculosis about 1.5 to 20 thousand years ago. This means that Y. pestis has evolved rapidly from being a pathogen widely found in the environment, able to infect mammalian intestines, to a blood-borne pathogen of mammals that can parasitize insects and has a limited capacity for survival outside a host.Y. pestis is rod shaped, gram negative, and non-motile yet has two distinct flagellar gene clusters; one set is incomplete and the other has a truncated FldH, which is a transcriptional activator for the flagellar genes.Y. pestis uses aerobic respiration and anaerobic fermentation to produce and consume hydrogen gas for energy.Yersinia species are pathogens whose environments are not rich in minerals and grow at temperatures ranging from about 26oC to 37oC.Y. pseudotuberculosis and Y. enterocolitica both infect the intestines of mammals through the fecal-oral route (contaminated food and water) and rarely is deadly. Y. pestis, on the other hand, is transmitted subcutaneously through a bite of an infected flea or rat (bubonic), but can also be transmitted by air (especially during pandemics of the disease). More specifically, fleas become infected after taking blood meals from septicemic animals and becoming infected themselves. Y. pestis grows in the midgut and eventually blocks the proventriculus, starving the flea for blood. The insects attempt to feed more often but end up giving back infected blood into the wound of the bite. The flea eventually dies, presumably from starvation and dehydration. On an interesting note, when the temperatures get higher fleas do not have their proventriculus blocked, and only those that are blocked can transmit the disease. When held at 30oC, fleas survive infections in an unblocked state, possibly leading at an explanation of why human bubonic plagues ended after the onset of warmer temperatures.All pathogenic species of Yersinia contain the pCD1virulence plasmid. Y. pestis obtained two unique plasmids that encode a variety of virulence determinants. The pPCP1 plasmid encodes the plasminogen activator Pla, essential for virulence through the subcutaneous route. The pMT1 plasmid encodes murine toxin Ymt and the F1 capsular protein, which have been shown to play a role in the transmission of plague. Ymt, designated murine toxin because the protein is highly lethal for mice, is required for Y. pestis to survive in fleas. Ymt mutants, however, are as virulent as its parent in mice with plague.Researchers have also discovered that at rising temperatures cells gradually lose their ability to bind Congo red (CR) along with their ability to cause disease in mice from peripheral routes of infection. This is because in the pgm (pigmentation) operon there are genes encoding the yersiniabactin (Ybt) siderophore-dependent iron transport system, required for virulence in mice subcutaneously, as well as genes for the Hms phenotype, which is required for cells to colonize and block the proventriculus. A pgm deletion is therefore lethal to Y. pestis.(From http://microbewiki.kenyon.edu/index.php/Yersinia) (MicrobeWiki: Yersinia)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pestis Antiqua Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 360102 NC_008122.1 Bac0002782 Campylobacter concisus 13826 "Campylobacter concisus 13826 is a gram-negative, curved bacillus that thrives optimally at moderate temperatures, classifying it as a mesophile. This microbe is a chemoheterotroph, relying on organic compounds for energy and carbon, and exhibits microaerophilic behavior, meaning it requires lower levels of oxygen than what is present in the atmosphere for optimal growth. Campylobacter concisus is primarily associated with the human gastrointestinal tract, where it can be found in the oral cavity and intestines, but has also been identified in other body sites, including the respiratory tract and genitourinary system. The gram-negative nature of Campylobacter concisus is indicative of its double membrane structure, featuring an outer membrane composed of lipopolysaccharides, which can help evade the host immune response. Its curved bacillus shape enhances motility, allowing this microorganism to navigate through viscous environments like intestinal mucus. As a mesophile, it thrives at temperatures around 37°C, typical of the human body, which supports its role as a pathogen. The chemoheterotrophic lifestyle of Campylobacter concisus relies on carbohydrates and amino acids for energy, underscoring its adaptability to the nutrient-rich environments of the human gut. Its microaerophilic requirement highlights its unique metabolic adaptations, allowing it to flourish in low-oxygen environments while potentially competing with other gut flora. Campylobacter concisus has garnered attention for its association with gastrointestinal diseases, particularly inflammatory bowel disease. Emerging research suggests that dysbiosis involving this microbe may play a role in gut health and disease progression, paving the way for further studies into its pathogenic mechanisms and potential therapeutic targets. Its ability to persist in various human body sites and adapt to different environments underscores its significance in microbial ecology and human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus 13826 Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Homo sapiens Chains - Singles Nonsporulating Yes 360104 NC_009796.1 Bac0002783 Campylobacter hominis ATCC BAA-381 "Campylobacter hominis ATCC BAA-381 is a microbe that thrives in a mesophilic temperature range, specifically between 25°C and 37°C, placing it in the temperature preference category of ""mesophilic"". This microbe is a heterotroph, meaning it does not produce its own food, but rather obtains energy from the breakdown of organic compounds. C. hominis is also a chemoheterotroph, as it uses chemical energy from the oxidation of organic compounds to produce ATP. Gram-stained samples of C. hominis reveal a gram-negative staining pattern, indicating the presence of a thin peptidoglycan layer in the cell wall. The microbe's shape is typically spiral or comma-like, with a helical body and a flagellated phenotype. C. hominis can be found in various body sites, including the gastrointestinal tract, respiratory tract, and genitourinary tract, across all species. This microbe is an obligate aerobe, requiring the presence of oxygen for survival and growth. In terms of energy production, C. hominis is capable of using the Embden-Meyerhof-Parnas (EMP) pathway, also known as glycolysis, to produce ATP from glucose. This is in contrast to many other microbes that use different metabolic pathways, such as the pentose phosphate pathway or the citric acid cycle. One of the most distinctive features of C. hominis is its unique ability to infect humans, often causing gastrointestinal disease, particularly in individuals with compromised immune systems. Additionally, its ability to colonize various body sites, including the respiratory and genitourinary tracts, has significant implications for human health and disease. Despite being a relatively well-studied species, C. hominis remains a significant public health concern, and continued research is necessary to better understand its behavior and pathogenic potential." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hominis ATCC BAA-381 Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Chains - Singles Nonsporulating No 360107 NC_009714.1 Bac0002784 Burkholderia pseudomallei 406e "Burkholderia pseudomallei 406e is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and is classified as an obligate aerobe. This microbe is part of a genus known for its environmental versatility, often found in soil and water, where it can persist in various ecological niches. The rod shape of B. pseudomallei 406e is characteristic of many members within the Burkholderia genus, contributing to its ability to adapt to different habitats.↵↵As an aerobic organism, B. pseudomallei 406e requires oxygen for its metabolic processes, influencing its distribution and behavior in terrestrial ecosystems. The capacity of this bacterium to inhabit diverse environments underscores its ecological significance, as it may play a role in nutrient cycling and soil dynamics. Furthermore, the adaptability of B. pseudomallei 406e to aerobic conditions allows it to exploit various substrates, which may facilitate its survival and proliferation in competitive environments. ↵↵Overall, the traits of Burkholderia pseudomallei 406e highlight its ecological role as a terrestrial microbe that is well-adapted to oxygen-rich habitats, potentially influencing microbial communities and ecosystem functions in its native environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 360118 AAMM00000000.2 Bac0002785 Crenothrix polyspora Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Crenotrichaceae Crenothrix Crenothrix polyspora 360316 FUKI00000000.1 Bac0002786 Longilinea arvoryzae Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Longilinea Longilinea arvoryzae anaerobic 37 mesophilic non-spore-forming 360412 BBXY00000000.1 Bac0002787 Roseburia inulinivorans "Roseburia inulinivorans is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites of humans and animals, including the gut, skin, and mucous membranes. As an obligate anaerobe, it requires a strict anaerobic environment to survive, which is typically found in the gastrointestinal tract. The Gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, providing structural support and protection. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients from its surroundings. As a chemoheterotroph, Roseburia inulinivorans relies on organic compounds for energy and carbon, breaking down complex molecules such as inulin, a polysaccharide found in plants. This ability to degrade inulin allows the microbe to thrive in environments where other microbes may struggle to survive. The mesophilic temperature preference of Roseburia inulinivorans allows it to grow optimally at temperatures between 20-45°C, making it well-suited to the temperatures found in the human gut. Roseburia inulinivorans plays a significant role in the human gut microbiome, contributing to the breakdown of complex carbohydrates and producing short-chain fatty acids, which provide energy to the host. Its presence has been linked to various health benefits, including the regulation of the immune system and the maintenance of a healthy gut barrier. The microbe's ability to produce butyrate, a short-chain fatty acid, has also been shown to have anti-inflammatory properties, highlighting its potential importance in the prevention and treatment of certain diseases." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia inulinivorans Positive No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 360807 QSFX00000000.1 Bac0002788 Exiguobacterium sp. AT1b "Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) is a non-spore forming Gram-positive bacterium isolated from a slightly alkaline and highly carbonate hot spring water of Angel Terrace, which is part of Mammoth Terrace, Yellowstone National Park. Exiguobacterium sp. is a facultative anaerobe but grows more profusely aerobically. It is able to grow from 15 to 50 degrees Celsius. The cells are rods about 2 um in length, with rounded ends. They occur singly, in pairs or infrequently in chains. Exiguobacterium sp. possesses high nuclease activity and are able to metabolize cellulosic materials. It is also involved in the carbon cycling in hot environments. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of high temperature and low temperature conditions. The issue of adaptations to different temperatures is of interest in the field of astrobiology. Organisms that inhabit such diametrally opposite environments may be used as models for understanding cellular responses on astral bodies. (Adaptated from: http://genome.jgi-psf.org/exi_a/exi_a.home.html). (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. AT1b AT1b Positive Rod Yes 1 1 Facultative anaerobe Thermophilic Specialized Free living Nonsporulating No 360911 NC_012673.1 Bac0002789 Pseudomonas savastanoi pv. savastanoi "Pseudomonas savastanoi pv. savastanoi is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits heterotrophic metabolism. This microbe is classified as an aerobe, requiring oxygen for its growth and energy production. P. savastanoi pv. savastanoi is capable of thriving in a variety of habitats, which may include diverse environments ranging from soil to plant surfaces.↵↵The rod shape and single-cell arrangement of P. savastanoi pv. savastanoi contribute to its adaptability in fluctuating environments, enabling it to utilize various organic compounds as energy sources. Its status as a heterotroph indicates that it is dependent on organic matter for nutrition, which may facilitate its role in ecological processes such as decomposition and nutrient cycling.↵↵The versatility of P. savastanoi pv. savastanoi in inhabiting multiple environments underscores its potential ecological significance, particularly in relation to plant interactions and its possible involvement in symbiotic or competitive relationships within microbial communities. Understanding this microbe's ecological roles could provide insights into its contributions to soil health and plant-microbe interactions, highlighting the importance of microbial diversity in maintaining ecosystem stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 360920 RBPF00000000.1 Bac0002790 Pseudomonas savastanoi pv. nerii "Pseudomonas savastanoi pv. nerii is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, which supports its adaptability to multiple habitats. This organism requires oxygen for growth, classifying it as an aerobe. ↵↵P. savastanoi pv. nerii is known to inhabit diverse environments, suggesting a versatile metabolic capacity that may allow it to exploit a range of ecological niches. The presence of this microbe in various habitats underscores its potential role in microbial communities, where it may contribute to nutrient cycling and interactions with other microorganisms. Understanding its ecological roles could provide insights into the dynamics of microbial ecosystems and the influence of environmental factors on bacterial distribution." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 360921 RBUB00000000.1 Bac0002791 Terribacillus saccharophilus Bacillati Bacillota Bacilli Caryophanales Bacillaceae Terribacillus Terribacillus saccharophilus 361277 NPBH00000000.1 Bac0002792 Bifidobacterium parmae Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium parmae anaerobic 361854 NMWT00000000.1 Bac0002793 Mycobacterium ulcerans Agy99 "In 1948 the etiologic agent of the Bairnsdale ulcer in humans was discovered by a team of Australian researchers and was named Mycobacterium ulcerans. During the 1960s many cases were reported from the Buruli County in Uganda and the disease became generally known as Buruli ulcer. The Buruli ulcer is a devastating necrotic disease of subcutaneous tissue and a single Buruli ulcer can cover more than 15% of a person's skin surface and contains huge numbers of extracellular bacteria. Despite their abundance and extensive tissue damage, there is no acute inflammatory response to the bacteria and the lesions are often painless. This pathology is attributed to mycolactone, a macrolide toxin. Impoverished rural communities of West and Central Africa are worst affected although the disease occurs in other parts of the world. Since 1989, the prevalence of Buruli ulcer has increased and now exceeds that of leprosy and, in some instances, tuberculosis. Outbreaks are sporadic and unpredictable. Although the epidemiology of Buruli ulcer is poorly understood, proximity to stagnant or slow-flowing watercourses is a recognized risk factor. M. ulcerans is associated with algae, therefore, snails and organisms that feed on algae could be passive hosts. It has been shown that M. ulcerans is able to multiply in the salivary glands of Naucoris cimicoides, a carnivorous water bug. Humans could become infected through contact with contaminated Naucorides. Mycobacterium ulcerans (strain Agy99) was isolated from an ulcerative lesion on the right elbow of a female patient from the Ga district of Ghana in 1999. Its genome is made up of a 5.6 Mb chromosome and a 174,155-bp plasmid. The chromosome contains 4160 CDS and 771 pseudogenes, it harbors two prophages, phiMU01 and phiMU02, 302 insertion sequence elements and multiple DNA deletions and rearrangements. This indicates that M. ulcerans has recently evolved via lateral gene transfer and reductive evolution from the generalist, more rapid-growing environmental Mycobacterium marinum to become a niche-adapted specialist. The virulence plasmid pMUM001 encodes 81 CDS. Six CDS code for proteins involved in mycolactone synthesis, among which, mlsA1 and mlsA2, two giant polyketide synthases (PKS) responsible for the synthesis of the mycolactone core, and mlsB which is responsible for the synthesis of the mycolactone side chain. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans Agy99 Positive Rod No 1 1 Aerobe 32 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 362242 NC_005916.1 Bac0002794 Flavobacterium aquidurense str. RC62 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aquidurense 362413 JRLF00000000.1 Bac0002795 Flavobacterium aquidurense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aquidurense 362413 FNPS00000000.1 Bac0002796 Flavobacterium reichenbachii str. LMG 25512 "Flavobacterium reichenbachii strain LMG 25512 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is characterized by its distinct morphological features typical of the Flavobacterium genus, which play a crucial role in its ecological niche. ↵↵The Gram-negative nature of F. reichenbachii strain LMG 25512 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that contributes to its resilience in various environments. The rod shape is consistent with the morphology observed in many members of the Flavobacteriaceae family, which often inhabit diverse aquatic ecosystems and can be involved in the degradation of organic matter.↵↵As an aerobic organism, F. reichenbachii strain LMG 25512 requires oxygen for its metabolic processes, positioning it within environments where oxygen is readily available, such as surface waters and sediments. The optimal growth temperature of 25.0°C suggests that this strain is well-adapted to moderately warm environments, which may align with the thermal conditions prevalent in its natural habitat.↵↵Overall, the specific traits of Flavobacterium reichenbachii strain LMG 25512 indicate its potential role in nutrient cycling and organic matter decomposition in aquatic ecosystems, highlighting its importance in maintaining ecological balance within these environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium reichenbachii Gram-negative rod motile aerobic 25 mesophilic 362418 JPRL00000000.1 Bac0002797 Ligilactobacillus salivarius UCC118 "Ligilactobacillus salivarius UCC118 is a Gram-positive, nonsporulating rod-shaped bacterium that is classified as a facultative anaerobe. This organism is primarily associated with host environments, indicating its potential role in symbiotic relationships, particularly within the gastrointestinal tracts of various animals, including humans. ↵↵As a member of the Lactobacillus genus, Ligilactobacillus salivarius UCC118 is likely involved in the fermentation of carbohydrates, which may lead to the production of lactic acid and other metabolites beneficial for gut health. The facultative anaerobic nature of this microbe allows it to thrive in varying oxygen conditions, potentially contributing to its adaptability within diverse host-associated environments. ↵↵The presence of Ligilactobacillus salivarius UCC118 in the gut microbiota suggests it may play a significant role in maintaining intestinal homeostasis and influencing the overall health of the host. Current research points towards its involvement in the modulation of the immune response and the competitive exclusion of pathogenic microorganisms, highlighting its importance in microbial community dynamics and gut health maintenance. Understanding the specific interactions of Ligilactobacillus salivarius UCC118 within the host could provide insights into its potential applications in probiotics and functional foods aimed at enhancing digestive health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 362948 NC_006529.1 Bac0002798 Haloquadratum walsbyi DSM 16790 "A square, non-motile, pigmented halophilic archaea that dominates in most thalassic NaCl-saturated environments, reaching population densities of over 107 cells per ml, this strain was isolated from a Spanish solar saltern. The two unique features of these cells are the wafer like rectangular shape,usually between 2 and 5 micro m and a cell thickness of not more than 0.1 micro m. In their specific habitat these squares are challenged by the sub-lethal conditions of an extremely high MgCl2 concentration and high solar irradiance. This means that although the organism thrives in an aqueous environment it suffers severe desiccation stress. Special mechanisms are therefore required to maintain optimal water activity within the cell and at the cell surface. Concomitant with the extremely high salinity, the amount of dissolved oxygen decreases to near anoxia and some essential nutrients (e.g. phosphates) become unavailable due to complexation with Mg2+. It encodes the largest archaeal protein known to date, halomucin (9159 residues), which is similar to animal mucins. Animal mucins play an important role in protecting various tissues against desiccation or harsh chemical conditions. Halomucin is thought to be exported outside the cell, where it is may be glycosylated, sulfated and sialated; H.walsbyi is the first archaea identified that is probably able to synthesize sialic acid. These modifications, along with the potential capacity to synthesize and poly-gamma-glutamate capsule, probably create an aqueous shield and in the case of the capsule may also help maintain the unique shape of the cell. (HAMAP: HALWD)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloquadratum Haloquadratum walsbyi SquareShaped No 1 1 Phototroph Mesophilic Aquatic Free living Singles No 362976 NC_008213.1 Bac0002799 Comamonas thiooxydans Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas thiooxydans 363952 CYHD00000000.1 Bac0002800 Comamonas thiooxydans str. JC12 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas thiooxydans 363952 AWOU00000000.1 Bac0002801 Comamonas thiooxydans str. JL14 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas thiooxydans 363952 AWTN00000000.1 Bac0002802 Chelatococcus sambhunathii "Chelatococcus sambhunathii is a Gram-negative, rod-shaped bacterium characterized as a non-spore-forming organism. This microbe demonstrates chemotrophic and organotrophic metabolic capabilities, utilizing organic compounds as energy sources for growth and maintenance. Its optimal growth temperature is approximately 37.0°C, suggesting a preference for conditions similar to those found in warm-blooded hosts or environments that mimic such thermal conditions.↵↵The distinct Gram-negative cell wall structure of Chelatococcus sambhunathii is indicative of its potential interactions within microbial communities, likely influencing its ecological niche and metabolic interactions with other microorganisms. The lack of sporulation may reflect a lifestyle that relies on stable environmental conditions, which could limit its ability to endure extreme stressors compared to spore-forming bacteria.↵↵In essence, Chelatococcus sambhunathii’s metabolic versatility and thermal preference may facilitate its role in nutrient cycling within its habitat, potentially contributing to the degradation of organic materials and influencing the composition of microbial communities in its environment. Further research into its specific ecological roles and interactions could provide deeper insights into its contributions to microbial dynamics and ecosystem functioning." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Chelatococcaceae Chelatococcus Chelatococcus sambhunathii Gram-negative rod motile 37 organotroph; chemotroph mesophilic non-spore-forming 363953 CYHC00000000.1 Bac0002803 Comamonas sp. E6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. E6 364029 BBXH00000000.1 Bac0002804 Sulfurivirga caldicuralii "Sulfurivirga caldicuralii is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits microaerophilic characteristics, thriving optimally at a temperature of 45.0°C. This organism is part of the diverse microbial communities that can be found in extreme thermal environments, likely contributing to biogeochemical cycles in such habitats. ↵↵As a microaerophile, S. caldicuralii requires reduced levels of oxygen for its metabolic processes, suggesting an adaptation to environments where oxygen is present but in lower concentrations than in the atmosphere. The specific temperature preference indicates that this microbe may be well-suited for life in hot springs or other geothermal locations, where it could play a role in sulfur cycling due to its likely involvement in sulfur metabolism, although such metabolic pathways have not been detailed in the provided traits.↵↵The unique combination of its morphological characteristics and environmental preferences positions Sulfurivirga caldicuralii as a potential candidate for studying microbial life in extreme conditions, offering insights into the adaptations that allow life to flourish in high-temperature and low-oxygen environments. Further research could elucidate its role in the microbial ecosystem and its potential applications in biotechnology or bioremediation." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Sulfurivirga Sulfurivirga caldicuralii Gram-negative rod microaerophile 45 thermophilic non-spore-forming 364032 FSRE00000000.1 Bac0002805 Pseudomonas pohangensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas pohangensis aerobic 364197 NZ_LT629785.1 Bac0002806 Cognatiyoonia koreensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cognatiyoonia Cognatiyoonia koreensis 364200 FOIZ00000000.1 Bac0002807 Granulibacter bethesdensis str. NIH6.1 "Granulibacter bethesdensis strain NIH6.1 is a Gram-negative, rod-shaped bacterium that has been isolated from a variety of habitats. This microbe exhibits characteristics typical of its genus, contributing to its classification within the broader context of bacterial diversity. The Gram-negative nature of G. bethesdensis suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may play a role in its environmental adaptability and interactions with other microorganisms.↵↵The versatile habitat of Granulibacter bethesdensis indicates its potential for niche specialization, allowing it to thrive in diverse environments. Such adaptability may be linked to specific metabolic capabilities or symbiotic relationships with other microbial or host organisms. As research continues, understanding the physiological and ecological roles of G. bethesdensis in its various habitats could provide insights into its interactions within microbial communities and its responses to environmental changes.↵↵Overall, the presence of Granulibacter bethesdensis str. NIH6.1 across multiple habitats highlights the significance of this bacterium in ecological research and its potential contributions to microbial diversity and ecosystem functioning. Further investigation into its metabolic pathways and interactions may reveal novel biological functions that underscore its ecological importance." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Granulibacter Granulibacter bethesdensis Negative Rod No 1 2 Mesophilic Multiple Free living 364410 NZ_CP018192.1 Bac0002808 Granulibacter bethesdensis str. CGDNIH3 "Granulibacter bethesdensis strain CGDNIH3 is a Gram-negative, rod-shaped bacterium characterized by its versatile habitat, which allows it to thrive in multiple environments. This organism is notable for its morphological features, which include a typical rod shape, a characteristic of many members of the Gram-negative group. The Gram-negative staining indicates a thin peptidoglycan layer surrounded by an outer membrane, a trait that can influence its interactions with other microorganisms and its resilience in various ecological niches.↵↵The ability of Granulibacter bethesdensis to inhabit multiple habitats suggests a degree of adaptability and metabolic versatility, potentially allowing it to exploit diverse resources in its surroundings. While specific ecological roles or interactions with other species are not detailed, the broad habitat range may imply potential involvement in nutrient cycling or other ecological processes.↵↵Research into Granulibacter bethesdensis may provide insights into the adaptations that allow Gram-negative bacteria to survive and flourish in a variety of environments, highlighting the ecological importance of such microorganisms in maintaining ecosystem balance. Understanding the traits and behaviors of this strain may also contribute to a broader comprehension of microbial diversity and function in different habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Granulibacter Granulibacter bethesdensis Negative Rod No 1 2 Mesophilic Multiple Free living 364410 NZ_CP003181.2 Bac0002809 Polaromonas naphthalenivorans CJ2 "Polaromonas naphthalenivorans (strain CJ2) is a Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria. Polaromonas naphthalenivorans was isolated from naphthalene-contaminated, freshwater sediment. This organism is capable of aerobic degradation of naphthalene at temperatures of less than 20 degrees Celsius. Naphthalene is the simplest member of a class of important contaminants, the polycyclic aromatic hydrocarbons (PAHs). PAHs can be toxic and/or carcinogenic, therefore PAH contamination is of considerable concern. The ability of Polaromonas naphthalenivorans to degrade PAHs at low temperatures makes it a potential bioremediation agent. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas naphthalenivorans CJ2 Negative Cocci No 1 2 Aerobe 20 Heterotroph Mesophilic Aquatic Free living Nonsporulating No 365044 NC_008759.1 Bac0002810 Rhodovulum imhoffii str. DSM 18064 "Rhodovulum imhoffii strain DSM 18064 is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and optimal growth temperature of 29.0°C. This organism is part of the diverse group of purple non-sulfur bacteria, which are known for their photosynthetic capabilities, utilizing light as an energy source in anaerobic or microaerophilic environments. ↵↵The rod shape of Rhodovulum imhoffii suggests a potential for motility and adaptation to various ecological niches, allowing it to thrive in environments where competition for resources may be significant. Its Gram-negative cell wall structure indicates the presence of an outer membrane, which can provide resistance to certain antibiotics and may play a role in its interactions with the surrounding environment.↵↵Given its optimal growth temperature of 29.0°C, Rhodovulum imhoffii is likely suited for life in moderately warm environments, possibly including freshwater habitats or artificially maintained ecosystems. The physiological traits of this bacterium, including its non-sporulating nature, suggest a reliance on favorable environmental conditions for survival and reproduction, rather than forming spores as a survival strategy. ↵↵Overall, the characteristics of Rhodovulum imhoffii str. DSM 18064 suggest it may play a role in nutrient cycling within its habitat, particularly through its potential engagement in photosynthetic processes that contribute to the overall productivity of microbial communities in warm, nutrient-rich environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum imhoffii Gram-negative rod non-motile 29 mesophilic non-spore-forming 365340 QAAA00000000.1 Bac0002811 Streptococcus mitis B6 "Streptococcus mitis B6 is a Gram-positive, heterotrophic bacterium that thrives in a temperature range of mesophilic, between 25-40°C. This microbe is capable of chemosynthesis, utilizing organic molecules as its energy source, and fermenting them to produce energy. Specifically, S. mitis B6 is a facultative anaerobe, meaning it can survive in both the presence and absence of oxygen. In the absence of oxygen, it can ferment carbohydrates and proteins to produce energy. However, in the presence of oxygen, it can perform aerobic respiration. In terms of morphology, S. mitis B6 is a coccus, meaning it has a spherical shape. It typically exists in pairs or chains. This microbe is found in various body sites, including the mucous membranes, skin, and respiratory tract of humans and animals. Specifically, it has been isolated from the oral cavity, nasopharynx, and genital tract. Streptococcus mitis B6 is a gram-positive bacteria, which means that it has a thick peptidoglycan layer in its cell wall. This layer is composed of a peptidoglycan backbone with alternating units of N-acetylglucosamine and N-acetylmuramic acid. The gram-positive classification is an important feature, as it determines the staining properties of the microbe. This microbe is a part of the oral flora and is often found in the dental plaque of humans. It has been associated with dental caries, but its exact role is still unclear. S. mitis B6 is also capable of adhering to tooth surfaces and modifying the local environment to create a niche for itself. In recent studies, S. mitis B6 has been found to produce bioactive compounds that inhibit the growth of other bacteria. This ability to produce antimicrobial peptides may contribute to its ability to colonize the oral cavity and establish itself as a member of the oral flora. Furthermore, research has shown that this microbe is capable of inducing an immune response in the host, leading to the production of antibodies that recognize its surface antigens. Overall, Streptococcus mitis B6 is a fascinating microbe that plays an important role in the oral ecosystem and continues to be a subject of interest in research." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis B6 Positive Cocci No 1 1 Aerobic Mesophilic HostAssociated Free living Homo sapiens Chains-Pairs Nonsporulating No 365659 NC_013853.1 Bac0002812 Sinorhizobium medicae WSM419 "Sinorhizobium medicae WSM419, originally known as Rhizobium meliloti WSM419, is an acid-tolerant strain originally isolated from acidic soil in Sardinia. It is a motile, non-spore-forming, rod-shaped bacteria. It nodulates Medicago spp., is used to inoculate these plants commercially, and is thus studied for its acid-tolerance. It was placed in a new taxon based on phenotypic and phylogenetic studies of the 16S gene. It has one chromosome and three plasmids. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium medicae WSM419 Negative Rod No 1 2 Aerobe 28 Mesophilic Multiple No 366394 NC_009620.1 Bac0002813 Haematobacter missouriensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Haematobacter Haematobacter missouriensis microaerophile 366616 NIPX00000000.1 Bac0002814 Xanthomonas citri pv. fuscans Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 366649 NZ_CP012054.1 Bac0002815 Yersinia similis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia similis 367190 CQBK00000000.1 Bac0002816 Rhodobacterales bacterium HTCC2255 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium HTCC2255 367336 AATR00000000.1 Bac0002817 Methanoculleus marisnigri JR1 "Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) is an anaerobic methanogenic archaeon phylogenetically associated with the order Methanomicrobiales. Methanoculleus marisnigri was first isolated from sediment from the Black Sea, but has also been identified in freshwater sediments. Members of the genus Methanoculleus are found commonly in marine and brackish environments, and they are among the most prevalent methanogens found in wastewater and sewage bioreactors and in landfills. Methanoculleus marisnigri can use hydrogen, formate, and secondary alcohols, such as propanol and butanol, for methanogenesis. A metabolic feature of Methanoculleus species and some closely related genera, but unique among the methanogens, is the ability to use ethanol and a variety of secondary alcohols as electron donors for methanogenesis, and this may contribute to their dominance in biomethanation processes. (HAMAP: METMJ)" Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus marisnigri JR1 Negative Cocci No 1 1 Anaerobe 21 Lithotroph Mesophilic Aquatic Free living Nonsporulating No 368407 NC_009051.1 Bac0002818 Thermofilum pendens Hrk 5 "Thermofilum pendens (strain Hrk5) is a a sulfur-dependent, anaerobic heterotroph archaea. It forms long thin filaments and may have an unusual mode of reproduction in which spherical bulges form at one end of the cell. It is an extracellular commensal, requiring an extract of another crenarchaeota Thermoproteus tenax for growth, and the genome sequence reveals that biosynthetic pathways for purines, most amino acids, and most cofactors are absent. Besides the lack of biosynthesis, several nutrient transporters that are not found in any other crenarchaeote are present in T. pendens. It appears that T. pendens has adapted to life in an environment rich in nutrients and grows mainly by peptide fermentation. It was known previously to utilize peptides as an energy source, but the genome revealed a substantial ability to grow on carbohydrates. T. pendens may obtain energy from sulfur reduction with hydrogen and formate as electron donors. It may also be capable of sulfur-independent growth on formate with formate hydrogen lyase. (HAMAP: THEPD)" Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum pendens Hrk 5 Rod No 1 1 Anaerobic 88 Hyperthermophilic Specialized Free living Nonsporulating No 368408 NC_008696.1 Bac0002819 Wolbachia endosymbiont of Laodelphax striatellus str. wStri Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Laodelphax striatellus 368602 LRUH00000000.1 Bac0002820 Morganella psychrotolerans Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella psychrotolerans psychrotolerant 368603 LZEX00000000.1 Bac0002821 Janthinobacterium svalbardensis str. PAMC 27463 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium svalbardense 368607 NZ_CP023422.1 Bac0002822 Flaviramulus basaltis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flaviramulus Flaviramulus basaltis 369401 FPKV00000000.1 Bac0002823 Salinispora tropica CNB-440 "Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) is an aerobic seawater-requiring marine actinomycete isolated from coarse beach sand off the Bahamas. The genus Salinispora is distinct from other actinomycetes however in that it resides in ocean sediments and is the first bacterium of its type to require seawater for growth thus providing opportunities to study marine adaptations in Gram-positive bacteria. One significant feature of S. tropica is its ability to produce structurally unique secondary metabolites. This observation supports the exploitation of marine actinomycetes as a source of new medicines. The metabolites observed from S. tropica include salinosporamide A, a potent inhibitor of the 20S proteasome that is currently in human clinical trials for the treatment of cancer. Interestingly, it has been observed that the three closely related Salinispora species produce dramatically different suites of secondary metabolites. These metabolites represent the single most significant phenotypic difference observed among the three species and raise questions about the ecological roles and evolutionary significance of secondary metabolites. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Salinispora Salinispora tropica CNB-440 Positive rod Yes 1 1 Aerobe 28 Mesophilic Aquatic Free living Singles - Clusters Sporulating No 369723 NC_009380.1 Bac0002824 Streptococcus pyogenes MGAS9429 "Streptococcus pyogenes MGAS9429 is a Gram-positive bacterium characterized by its spherical shape, preference for mesophilic temperatures (around 37°C), and classification as a chemoheterotroph. This pathogen is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. It is predominantly found in the human body, colonizing various sites including the throat, skin, and other mucosal surfaces, where it can cause infections. As a Gram-positive organism, S. pyogenes possesses a thick peptidoglycan layer that retains the crystal violet stain during the Gram staining process, resulting in a purple appearance under the microscope. Its spherical morphology often arranges in chains or pairs, an arrangement typical of many streptococci. The mesophilic temperature preference of this bacterium aligns with the human body's temperature, facilitating its survival and pathogenicity in humans. Being a chemoheterotroph, S. pyogenes obtains its energy from organic compounds, which is essential for its growth, reproduction, and virulence. Its facultative anaerobic nature enables it to adapt to various host environments, switching between fermentation and respiration based on oxygen availability. This flexibility enhances its ability to colonize and infect different body sites. S. pyogenes MGAS9429 is particularly notable due to its virulent properties and potential to cause diseases ranging from mild pharyngitis (strep throat) to severe conditions like necrotizing fasciitis and rheumatic fever. This strain is part of the M-protein family, which contributes to its pathogenic capabilities by evading the host's immune response and enhancing adherence to host tissues. Its ability to form biofilms further complicates treatment and eradication, making it a significant concern in clinical microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes MGAS9429 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 370551 NC_008021.1 Bac0002825 Aureimonas altamirensis str. ON-56566 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas altamirensis 370622 JRFJ00000000.1 Bac0002826 Sphingomonas mucosissima str. DSM 17494 "Sphingomonas mucosissima strain DSM 17494 is a Gram-negative, rod-shaped bacterium with an optimal growth temperature of 25.0°C. This microbial species belongs to the genus Sphingomonas, which is characterized by its unique sphingolipid-rich membrane composition, contributing to its adaptability in diverse environments. ↵↵As a member of the Sphingomonadaceae family, Sphingomonas mucosissima is known for its metabolic versatility, although specific metabolic pathways for this strain have not been detailed in the available data. The Gram-negative nature of this bacterium indicates a distinctive cell envelope structure, which typically includes an outer membrane containing lipopolysaccharides, potentially influencing its interactions within various ecosystems.↵↵The optimal growth temperature of 25.0°C suggests that Sphingomonas mucosissima may thrive in moderate environmental conditions, which could include various soil and aquatic habitats. The strain's physiological attributes may permit it to play a role in biogeochemical cycling, particularly in the degradation of organic compounds, although specific ecological functions remain to be thoroughly investigated.↵↵In summary, Sphingomonas mucosissima strain DSM 17494 exemplifies the potential of Gram-negative bacteria to adapt to and thrive in mesophilic environments, highlighting its importance in ecological processes such as organic matter decomposition and nutrient cycling. Further research into its metabolic capabilities could elucidate its role in specific biogeochemical pathways." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas mucosissima Gram-negative rod non-motile 25 mesophilic 370959 NBBJ00000000.1 Bac0002827 Erwinia typographi str. M043b "Erwinia typographi strain M043b is a Gram-negative, rod-shaped bacterium characterized by its ability to thrive in both aerobic and anaerobic environments. This strain does not form spores, which is a notable trait among its genus. Optimal growth conditions for E. typographi M043b occur at a temperature of 29.0°C, suggesting a preference for moderate temperatures that may reflect its adaptation to specific ecological niches.↵↵The facultative anaerobic nature of this bacterium indicates its metabolic versatility, allowing it to utilize various electron acceptors depending on the availability of oxygen. This trait may enable E. typographi M043b to inhabit a range of environments where oxygen levels fluctuate, potentially contributing to its survival in diverse habitats.↵↵While the specific ecological roles or interactions of E. typographi M043b remain to be fully elucidated, its traits suggest a capacity for adaptation to varying environmental conditions. This adaptability may permit it to play a role in the degradation of organic materials or in the cycling of nutrients within its ecosystem, potentially influencing microbial community dynamics and ecosystem functions. Further investigation into this strain could provide insights into its ecological significance and metabolic pathways." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia typographi Gram-negative rod facultative aerobe/anaerobe 29 mesophilic non-spore-forming 371042 JRUQ00000000.1 Bac0002828 Sphingobacterium daejeonense Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium daejeonense 371142 NZ_LR590470.1 Bac0002829 Bacteroides xylanisolvens "Bacteroides xylanisolvens is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites across different species, including the gastrointestinal tract, skin, and oral cavity. As an obligate anaerobe, Bacteroides xylanisolvens requires the absence of oxygen to survive and multiply. The gram-negative characteristic indicates that the microbe's cell wall contains an outer lipid bilayer, providing it with a unique set of interactions with its environment. Its rod-shaped morphology allows for efficient movement and colonization of surfaces. The mesophilic temperature preference suggests that Bacteroides xylanisolvens is adapted to moderate temperatures, typical of many animal hosts. As a chemoheterotroph, the microbe relies on external sources of organic compounds for energy and carbon. The ability to inhabit various body sites across different species highlights its adaptability and potential for symbiotic relationships. The obligate anaerobic nature of Bacteroides xylanisolvens limits its habitat to low-oxygen environments, such as the gut. Bacteroides xylanisolvens plays a significant role in the breakdown of complex polysaccharides, such as xylan, and has been implicated in the degradation of plant biomass, making it a key player in the cycling of nutrients in various ecosystems, and its presence has been detected in environments ranging from the human gut to soil and sediment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 FOUM00000000.1 Bac0002830 Streptomyces diacarni Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces diacarni 371608 QOIN00000000.1 Bac0002831 Rhodobacter ferrooxidans Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter ferrooxidans 371731 ACYY00000000.1 Bac0002832 Cohaesibacter gelatinilyticus "Cohaesibacter gelatinilyticus is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic growth characteristics, thriving optimally at a temperature of 29.0°C. This adaptability to varying oxygen levels suggests a versatile metabolic capacity, allowing it to flourish in diverse environmental conditions. The rod shape of C. gelatinilyticus may also influence its motility and interaction with substrates in its habitat, potentially enhancing its ability to colonize and utilize various organic materials. ↵↵The optimal growth temperature of 29.0°C indicates a preference for moderately warm environments, which could reflect its ecological niche or habitat preferences in natural or artificial settings. Understanding the growth conditions of C. gelatinilyticus is crucial for potential applications in biotechnology or environmental microbiology, where such traits might be harnessed for bioremediation or the breakdown of complex organic compounds. ↵↵Overall, the characteristics of Cohaesibacter gelatinilyticus suggest that it may play a significant role in the microbial community dynamics within its ecological niche by contributing to nutrient cycling and organic matter degradation, reinforcing the importance of studying such microorganisms to fully comprehend their ecological roles." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Cohaesibacteraceae Cohaesibacter Cohaesibacter gelatinilyticus Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 372072 OBEL00000000.1 Bac0002833 Buchnera aphidicola BCc "Buchnera aphidicola BCc is a Gram-negative bacterium characterized by its single-cell arrangement and is specifically associated with host organisms, namely aphids. As an endosymbiont, B. aphidicola BCc plays a crucial role in the nutritional ecology of its aphid hosts, providing essential amino acids that the insects cannot synthesize on their own. This symbiotic relationship exemplifies the intricate dependencies that can develop between microbial species and their hosts.↵↵The bacterium resides within specialized cells known as bacteriocytes, which are located in the aphid's body. This intimate association allows B. aphidicola BCc to efficiently transfer nutrients directly to the host, thereby influencing the aphid's growth and reproductive success. The metabolism of B. aphidicola BCc is adapted to the nutrient-poor environment of the aphid's diet, primarily consisting of plant sap, which is low in essential amino acids. ↵↵Buchnera aphidicola BCc serves as a model organism for studying endosymbiotic relationships and the evolutionary dynamics of microbial communities. It provides valuable insights into how such symbiotic associations can drive metabolic adaptations and co-evolution in host organisms. The presence of B. aphidicola BCc in aphids highlights the importance of microbial symbionts in shaping the fitness and ecological interactions of their hosts, underscoring the broader implications of symbiosis in ecological and evolutionary processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Buchnera Buchnera aphidicola Negative Mesophilic HostAssociated Symbiotic Singles 372461 NC_011878.1 Bac0002834 Shigella flexneri 5 str. 8401 "Shigella flexneri 5 str. 8401 is a gram-negative, rod-shaped bacterium that thrives optimally at moderate temperatures, classified as a mesophile. It is a chemoheterotroph, deriving energy from organic compounds. This opportunistic pathogen colonizes the intestinal tract of humans, primarily affecting the large intestine, where it causes shigellosis, an infectious disease characterized by diarrhea, fever, and abdominal pain. The gram-negative classification of *S. flexneri* indicates the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contribute to its pathogenicity and ability to evade the host's immune response. The rod shape, or bacillus form, allows for efficient motility and colonization within the human gastrointestinal tract. As a mesophile, *S. flexneri* flourishes between 30°C and 37°C, aligning with the human body temperature, which enhances its infectious potential. Being a chemoheterotroph, *S. flexneri* relies on pre-formed organic molecules for energy and carbon. This metabolic strategy is crucial for survival in the nutrient-rich environment of the human gut. As a facultative anaerobe, *S. flexneri* can grow in both aerobic and anaerobic conditions, allowing it to adapt and thrive within the fluctuating oxygen levels of the intestinal ecosystem. This bacterium possesses a type III secretion system (T3SS), which it uses to inject virulence factors directly into host cells, promoting invasion and evasion of the immune response. The genetic diversity within *S. flexneri* strains, including strain 8401, has implications for vaccine development and public health strategies, as certain serotypes exhibit increased virulence. Furthermore, its learned resistance to multiple antibiotics poses significant challenges in treating shigellosis, accentuating the need for ongoing research and novel therapeutic approaches in managing this pathogen." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri 8401 Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 373384 NC_008258.1 Bac0002835 Natrinema ejinorense str. JCM 13890 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema ejinorense 373386 NXNI00000000.1 Bac0002836 Rivularia sp. PCC 7116 Bacillati Cyanobacteriota Cyanophyceae Nostocales Rivulariaceae Rivularia Rivularia sp. PCC 7116 373994 NC_019679.1 Bac0002837 Baumannia cicadellinicola str. Hc "Baumannia cicadellinicola str. Hc is a Gram-negative, coccoid bacterium that is primarily associated with the host organism. This microbe is known for its close relationship with hemipteran insects, particularly cicadas and leafhoppers, where it plays a role in the intricate symbiotic interactions between the host and its microbial community. The cocci shape of Baumannia cicadellinicola str. Hc may facilitate its adaptation to the particular cellular environments within the host.↵↵As a host-associated bacterium, Baumannia cicadellinicola str. Hc is likely involved in nutrient metabolism or may contribute to the overall health and fitness of its insect host. Such symbiotic relationships are crucial for the survival of many insect species, as they can enhance nutrient acquisition or provide protection against pathogens. The specific traits of this bacterium suggest it may play a significant role in the metabolic processes of its host, possibly aiding in the digestion of plant materials or in the synthesis of essential compounds.↵↵Understanding the interactions between Baumannia cicadellinicola str. Hc and its host could provide valuable insights into the ecological dynamics of insect populations and their associated microbiomes. Furthermore, this bacterium exemplifies the complex relationships that can develop between microorganisms and their hosts, highlighting the importance of symbiosis in microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Palibaumannia Candidatus Palibaumannia cicadellinicola Negative Cocci No 1 Mesophilic HostAssociated Free living 374463 NC_007984.1 Bac0002838 Aminobacter sp. MSH1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aminobacter Aminobacter sp. MSH1 374606 NZ_CP026265.1 Bac0002839 Neisseria meningitidis 053442 "Neisseria meningitidis 053442 is a gram-negative, diplococcal-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites, including the respiratory tract, bloodstream, and cerebrospinal fluid, across multiple species, including humans. As an obligate aerobe, it requires oxygen to grow and survive. The gram-negative characteristic is attributed to its thin peptidoglycan layer and outer lipid membrane, which also makes it more resistant to certain antibiotics. Its diplococcal shape allows it to adhere to and invade host cells, contributing to its pathogenicity. As a mesophilic microbe, it grows best in moderate temperatures, typical of the human body.As a chemoheterotroph, Neisseria meningitidis 053442 relies on external sources of carbon and energy, which it obtains by breaking down complex organic molecules. This metabolic process allows it to thrive in various environments, including the human host. Its ability to infect multiple body sites, including the bloodstream and cerebrospinal fluid, makes it a significant concern for public health. The microbe's requirement for oxygen limits its growth to aerobic environments, which is why it is typically found in the upper respiratory tract, where oxygen levels are higher. Neisseria meningitidis 053442 is a major cause of meningitis and sepsis, particularly in children and young adults. Its ability to evade the host's immune system and cause severe disease has made it a focus of vaccine development and research. The microbe's polysaccharide capsule is a key virulence factor, allowing it to resist phagocytosis and cause invasive disease. Due to its severe disease potential and global distribution, Neisseria meningitidis 053442 is closely monitored by health organizations, and outbreaks are quickly contained through vaccination and contact tracing efforts." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis 53442 Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Homo sapiens Pairs Nonsporulating Yes 374833 NC_010120.1 Bac0002840 Candidatus Korarchaeum cryptofilum OPF8 Candidatus Korarchaeum cryptofilum OPF8.This organism is being sequenced for comparative genome analysis. (NCBI BioProject: bp_list[1]) Thermoproteati Thermoproteota Candidatus Korarchaeia Candidatus Korarchaeales Candidatus Korarchaeaceae Candidatus Korarchaeum Candidatus Korarchaeum cryptofilum Negative Filamentous Anaerobic Thermophilic Specialized Free living 374847 NC_010482.1 Bac0002841 Haemophilus influenzae PittII "Haemophilus influenzae PittII is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 35.0°C. This microbe is primarily host-associated, indicating its presence in environments closely linked to living organisms, which may suggest a symbiotic or commensal relationship within its ecological niche. H. influenzae PittII exhibits a versatile oxygen requirement, functioning as both an aerobe and a facultative anaerobe, allowing it to adapt to varying oxygen levels in its habitat. ↵↵The ability to survive in both aerobic and anaerobic conditions may confer a competitive advantage in diverse environments, particularly within host-associated ecosystems where oxygen availability can fluctuate. Such adaptability could facilitate its persistence and interactions with the host microbiome, potentially influencing local microbial community dynamics. Understanding the specific interactions and roles of H. influenzae PittII in its host environment may provide insights into its ecological significance and contribute to broader knowledge of microbial relationships in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 374933 AAZI00000000.1 Bac0002842 Picosynechococcus sp. PCC 7003 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus Picosynechococcus sp. PCC 7003 374981 NZ_CP016475.1 Bac0002843 Haemophilus influenzae 22.4-21 "Haemophilus influenzae 22.4-21 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic growth characteristics. This microbe thrives optimally at a temperature of 35.0°C, indicating a potential adaptation to host-associated environments, where it may be found in the warm-blooded hosts. ↵↵As a member of the genus Haemophilus, this strain's habitat is closely linked to its association with various hosts, suggesting a possible role in host-microbe interactions. The ability to grow in both aerobic and anaerobic conditions may confer an advantage in fluctuating oxygen environments within host tissues. This flexibility could allow Haemophilus influenzae 22.4-21 to colonize diverse niches, potentially influencing its ecological dynamics within the host.↵↵Understanding the growth conditions and environmental adaptability of Haemophilus influenzae 22.4-21 could provide insights into its ecological role and interactions within host ecosystems, emphasizing the importance of studying host-associated microorganisms in their natural habitats. This knowledge may also guide future research into the functional implications of this microbe in health and disease, although such aspects require further investigation." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 375063 AAZJ00000000.1 Bac0002844 Loigolactobacillus backii str. L101 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus backii 375175 LGIZ00000000.1 Bac0002845 Loigolactobacillus backii Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus backii 375175 NZ_CP014877.1 Bac0002846 Haemophilus influenzae R3021 "Haemophilus influenzae R3021 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, exhibiting optimal growth at 35.0°C. This microbe is classified as an aerobe and is also capable of facultative anaerobic respiration, allowing it to adapt to varying oxygen levels within its ecological niches. ↵↵As a member of the genus Haemophilus, H. influenzae R3021 shares characteristics with other species in this group, known for their association with various host organisms. The bacterium's rod shape and Gram-negative cell wall structure are indicative of its potential roles in microbial communities, particularly within the respiratory tract of hosts. ↵↵The ability to grow in both aerobic and anaerobic conditions suggests that H. influenzae R3021 may occupy diverse microenvironments within its host, potentially affecting its interactions with other microbial species. This versatility may facilitate its survival and persistence in dynamic ecological niches, where fluctuations in oxygen availability can occur. Further investigations into the specific ecological roles and interactions of H. influenzae R3021 could provide insights into the broader implications of its presence in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 375432 AAZE00000000.1 Bac0002847 Roseobacter denitrificans OCh 114 "Roseobacter denitrificans OCh 114.A single colony of Roseobacter denitrificans strain OCh 114 was grown heterotrophically and total DNA was isolated using proteinase K treatment followed by phenol extraction. The DNA was fragmented by kinetic shearing, and three shotgun libraries were generated: small and medium insert libraries in pOTWI3 (using size fractions of 2-3 kb and 6-8 kb, respectively), and a large insert fosmid library in pEpiFOS-5 (insert sizes ranging from 28-47 kb), which was used as a scaffold. The relative amount of sequence coverage obtained from the small, medium, and large insert libraries was 8X, 1X, and 1X, respectively. The whole genome sequence was established from 55,081 end sequences (giving 9.6X coverage) derived from these libraries using dye terminator chemistry on ABI 3730xl automated sequencers.The aerobic phototrophic bacteria are ubiquitous as plant symbionts, free-living in lakes and ocean surface waters, soils and even near deep sea hydrothermal vents. In fact, ~10% of all microorganisms in marine surface water samples appear to be aerobic phototrophic bacteria, suggesting a significant contribution to the global carbon cycle. Although the numbers of aerobic phototrophic bacteria vary with locale (Goericke, 2002), it is clear that these organisms are a previously unrecognized major component of the bacterial biomass on Earth. The genome sequence of this representative aerobic phototrophic bacteria species will enable discovery in the following three areas: 1) the evolutionary genesis of photosynthesis genes; 2) pathways of carbon dioxide fixation and production; 3) light and oxygen signal transduction in gene expression.Goericke R (2002) Bacteriochlorophyll a in the ocean: Is anoxygenic bacterial photosynthesis important? Limnol Oceanogr 47: 290-295. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseobacter Roseobacter denitrificans Och 114 Negative Rod Yes 2 Aerobe Photosynthetic - Phototroph Mesophilic Multiple Plants No 375451 NC_008388.1 Bac0002848 Streptomyces sp. NL15-2K Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NL15-2K 376149 BHXA00000000.1 Bac0002849 Halotalea alkalilenta Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halotalea Halotalea alkalilenta 376489 NZ_CP015243.1 Bac0002850 Gluconobacter japonicus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter japonicus 376620 LHZI00000000.1 Bac0002851 Escherichia coli O103:H2 "Escherichia coli O103:H2 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as individual cells. This strain thrives optimally at 37.0°C, which coincides with the body temperature of many mammals, suggesting its adaptation as a host-associated microbe. E. coli O103:H2 is characterized as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, allowing it to colonize diverse niches within host organisms.↵↵As a member of the Escherichia genus, E. coli O103:H2 occupies a significant ecological role in the gastrointestinal tract of warm-blooded animals. Its presence in such habitats underscores the importance of temperature and oxygen availability in shaping microbial communities within hosts. The ability to grow in varying oxygen levels enhances its survival in different microenvironments, such as within the gut where oxygen levels can fluctuate.↵↵Understanding the traits of E. coli O103:H2 may provide insights into its ecological interactions within the host microbiome, as well as its potential responses to environmental stresses. While specific pathogenicity or ecological roles of this strain are not detailed here, its adaptability to host-associated environments emphasizes the complexity of microbial life and the importance of studying diverse strains within the Escherichia genus." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 376725 NZ_CP031909.1 Bac0002852 Yersinia pestis Nepal516 "Yersinia spp. are responsible for disease syndromes ranging from gastroenteritis to plague. Y. pestis is the cause of the plague and is actually catagorized into three subtypes or biovars; Antiqua, Medievalis, and Orientalis, each associated with a major pandemic. Y. pestis strand KIM belongs to biovar Mediaevalis while strand CO92 is in biovar Orientalis. Biovar Mediaevalis is thought to of descended from the bacteria that caused the second pandemic (the Black Death), while biovar Orientalis bacteria are responsible for the current pandemic (modern plague).It is believed that Y. pestis is a clone that evolved from Y. pseudotuberculosis about 1.5 to 20 thousand years ago. This means that Y. pestis has evolved rapidly from being a pathogen widely found in the environment, able to infect mammalian intestines, to a blood-borne pathogen of mammals that can parasitize insects and has a limited capacity for survival outside a host.Y. pestis is rod shaped, gram negative, and non-motile yet has two distinct flagellar gene clusters; one set is incomplete and the other has a truncated FldH, which is a transcriptional activator for the flagellar genes.Y. pestis uses aerobic respiration and anaerobic fermentation to produce and consume hydrogen gas for energy.Yersinia species are pathogens whose environments are not rich in minerals and grow at temperatures ranging from about 26oC to 37oC.Y. pseudotuberculosis and Y. enterocolitica both infect the intestines of mammals through the fecal-oral route (contaminated food and water) and rarely is deadly. Y. pestis, on the other hand, is transmitted subcutaneously through a bite of an infected flea or rat (bubonic), but can also be transmitted by air (especially during pandemics of the disease). More specifically, fleas become infected after taking blood meals from septicemic animals and becoming infected themselves. Y. pestis grows in the midgut and eventually blocks the proventriculus, starving the flea for blood. The insects attempt to feed more often but end up giving back infected blood into the wound of the bite. The flea eventually dies, presumably from starvation and dehydration. On an interesting note, when the temperatures get higher fleas do not have their proventriculus blocked, and only those that are blocked can transmit the disease. When held at 30oC, fleas survive infections in an unblocked state, possibly leading at an explanation of why human bubonic plagues ended after the onset of warmer temperatures.All pathogenic species of Yersinia contain the pCD1virulence plasmid. Y. pestis obtained two unique plasmids that encode a variety of virulence determinants. The pPCP1 plasmid encodes the plasminogen activator Pla, essential for virulence through the subcutaneous route. The pMT1 plasmid encodes murine toxin Ymt and the F1 capsular protein, which have been shown to play a role in the transmission of plague. Ymt, designated murine toxin because the protein is highly lethal for mice, is required for Y. pestis to survive in fleas. Ymt mutants, however, are as virulent as its parent in mice with plague.Researchers have also discovered that at rising temperatures cells gradually lose their ability to bind Congo red (CR) along with their ability to cause disease in mice from peripheral routes of infection. This is because in the pgm (pigmentation) operon there are genes encoding the yersiniabactin (Ybt) siderophore-dependent iron transport system, required for virulence in mice subcutaneously, as well as genes for the Hms phenotype, which is required for cells to colonize and block the proventriculus. A pgm deletion is therefore lethal to Y. pestis.(From http://microbewiki.kenyon.edu/index.php/Yersinia) (MicrobeWiki: Yersinia)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pestis Nepal516 Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 377628 NC_008118.1 Bac0002853 Teredinibacter turnerae T7901 "Teredinibacter turnerae (strain ATCC 39867 / T7901) is a cellulolytic and diazotrophic Gram-negative bacterium isolated from the gills of woodboring marine bivalves Bankia gouldi of the family Teredinidae (shipworms). This species are shown to coexist with other as yet uncultivated bacteria as a component of an intracellular endosymbiotic bacterial consortium within specialized cells (bacteriocytes) of the gill epithelium. It displays an unusual combination of properties, being the only aerobic bacterium known to grow with cellulose and dinitrogen, respectively, as its sole carbon and nitrogen sources. The cellulolytic and diazotrophic capabilities of T. turnerae suggested two potential roles for this bacterium in the shipworm symbiosis. The first is to produce enzymes that may assist the host in degrading carbohydrate components of woody plant materials (cellulose, hemicellulose, and pectin). Shipworms are the only marine animals known to grow and reproduce normally with wood as their sole source of particulate food. The second is to provide a source of fixed nitrogen to supplement the host's nitrogen deficient diet of wood. T. turnerae genome is notable for containing an unusually large number of protein domains involved in the degradation of complex polysaccharides, including glycoside hydrolases (GH), carbohydrate esterases (CE), pectin lyases (PL), and carbohydrate binding modules (CBM). However, in contrast to S. degradans, which is a generalist capable of degrading more than 10 types of plant, algal, animal and fungal polysaccharides, the T. turnerae genome lacks enzyme systems for degradation of common marine polysaccharides including agar, alginate, and fucoidan and has only comparatively sparse representation of chitinase (two vs. seven in S. degradans) and laminarinase (six vs. ten in S. degradans) genes. Enzymes for degradation of the fungal polysaccharide pullulan are also absent in T. turnerae. Instead, the gene content of the T. turnerae genome suggests a high degree of specialization for degrading polysaccharides associated with woody plant materials, including cellulose, xylan, mannan, galactorhamnan and pectin. The genome of T. turnerae revealed a complete set of nitrogen fixation genes (nif) organized in three main clusters. The first cluster contains nitrogenase accessory and regulatory genes including nifQ, nifBAL, and the electron transport complex genes rnfABCDGE. The second cluster contains the structural nitrogenase genes encoded by the nifHDKT operon. The third cluster contains genes nifENX whose gene products function to synthesize nitrogenase molydenum-iron cofactors, as well as nifUSVPWZM whose gene products also function in nitrogen fixation. In addition to genes involved in nitrogen fixation, about 40 genes in the genome of T. turnerae are predicted to function in nitrogen assimilation. The majority of these are dedicated to urea metabolism and transport. The genome of T. turnerae is also of interest as an example of the range of adaptations associated with intracellular endosymbionts of eukaryotes. A characteristic suite of genomic modifications, including reduced genome size, skewed %G+C, elevated mutation rates and loss of genes of core metabolism, are identified through analysis of genomes of a number of obligate intracellular symbionts. However, this is not the case for T. turnerae, which stands as an example of a bacterium that is observed in nature only as an endosymbiont, but that can be cultivated in vitro in a simple defined medium without added vitamins or growth factors. (Adaptated from PMID:19568419). (HAMAP: TERTT)" Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Teredinibacter Teredinibacter turnerae T7901 Negative Rod Yes 1 2 Aerobe 32 Chemoheterotroph Mesophilic HostAssociated Symbiotic Lyrodus pedicellatus No 377629 NC_012997.1 Bac0002854 Allobosea sp. CRIB-10 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. CRIB-10 378404 FOKP00000000.1 Bac0002855 Gemmatimonas aurantiaca T-27 "Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) is a phylogenetically novel aerobic rod-shaped motile Gram-negative bacterium isolated from an anaerobic-aerobic sequential batch reactor operated under enhanced biological phosphorus removal conditions for wastewater treatment. G. aurantiaca grows at 25-35 degrees Celsius with an optimum growth temperature of 30 degrees Celsius, whilst no growth is observed below 20 or above 37 degrees Celsius within 20 days incubation. The pH range for growth is 6.5-9.5, with an optimum at pH 7.0. G. aurantiaca is able to utilize a limited range of substrates, such as yeast extract, polypepton, succinate, acetate, gelatin and benzoate. It is also able to utilize the following substrates weakly: glucose, sucrose, galactose, melibiose, maltose, formate and b-hydroxybutyrate. (adapated from PMID: 12892144). (EBI Integr8)" Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca T-27 Negative Rod No 1 2 Aerobe 30 Mesophilic Free living Nonsporulating No 379066 NC_012489.1 Bac0002856 Marinobacter pelagius Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter pelagius 379482 FOUR00000000.1 Bac0002857 Trabulsiella odontotermitis str. 12 "Trabulsiella odontotermitis str. 12 is a Gram-positive, non-spore-forming rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, indicating its ability to thrive in both oxygen-rich and oxygen-poor environments. This microbe has an optimal growth temperature of 32.0°C, suggesting a preference for mesophilic conditions that are commonly found in various ecological niches.↵↵The Gram-positive nature of T. odontotermitis str. 12 is indicative of its thick peptidoglycan layer, which may contribute to its resilience under certain environmental stresses. Its rod shape is a common morphology among many bacteria, allowing for versatile movement and adaptability within its habitat. The facultative nature of its oxygen requirement suggests that T. odontotermitis str. 12 can metabolize nutrients through aerobic respiration when oxygen is available, or switch to fermentation pathways in anaerobic conditions. ↵↵Potential ecological implications of T. odontotermitis str. 12 may include its role in the microbial community dynamics within its environment, especially in sediment or decaying organic matter where varying oxygen levels are present. The adaptability to both aerobic and anaerobic conditions could provide a competitive advantage in diverse microbiomes, particularly in environments impacted by organic decomposition. Further research may elucidate its interactions within these communities and its contributions to nutrient cycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Trabulsiella Trabulsiella odontotermitis Gram-positive rod facultative aerobe/anaerobe 32 mesophilic non-spore-forming 379893 JNGI00000000.1 Bac0002858 Pseudomonas protegens "Pseudomonas protegens is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic heterotroph, utilizing organic compounds for energy. This versatile microbe thrives optimally at a temperature of 25.0 degrees Celsius and is found in a variety of habitats, suggesting its adaptability to diverse environmental conditions. ↵↵Pseudomonas protegens is recognized for its metabolic versatility, allowing it to exploit a wide range of organic substrates, which may contribute to its ecological success in various niches, including soil and water environments. The bacterium’s aerobic nature indicates a reliance on oxygen for respiration, which may influence its distribution in environments with varying levels of oxygen availability. ↵↵The ability of Pseudomonas protegens to thrive in multiple habitats highlights its potential role in biogeochemical cycles and its interactions within microbial communities. Notably, this species has been studied for its potential applications in biocontrol, suggesting an ecological role in suppressing plant pathogens and influencing plant health. Thus, understanding the traits of Pseudomonas protegens contributes to insights into its ecological significance and possible applications in sustainable agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas protegens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 380021 MOAK00000000.1 Bac0002859 Glycomyces sambucus Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces sambucus aerobic 29 mesophilic 380244 FNGF00000000.1 Bac0002860 Xanthomonas albilineans GPE PC73 "Xanthomonas albilineans GPE PC73 is a Gram-negative, rod-shaped bacterium that inhabits various ecological niches including the leaf surface, phyllosphere, rhizosphere, and soil, as well as within the xylem vessels of plants. This microbe is strictly aerobic, necessitating the presence of oxygen for its metabolic processes. Its ability to colonize the leaf surfaces and associated areas suggests a potential role in the complex microbial communities that reside in these environments.↵↵The presence of Xanthomonas albilineans in both leaf lesions of fallen leaves and in soil indicates its adaptability to different habitats, facilitating its survival and proliferation in various ecological contexts. The association with xylem vessels further implies a capacity for interacting with plant vascular systems, which may influence its ecological relationships within plant microbiomes.↵↵Notably, the diverse habitats occupied by Xanthomonas albilineans suggest that it may play a significant role in the nutrient cycling processes within these environments, particularly in leaf litter decomposition and soil health. Understanding the ecological functions of this bacterium could provide insights into its role in plant health and microbial dynamics in agricultural systems, highlighting its potential importance in maintaining ecosystem balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas albilineans negative Rod Yes 1 aerobic leaf surface; leaf surface areas; lesion of fallen leaves; phyllosphere; rhizosphere; soil; xylem vessels 380358 NC_013722.1 Bac0002861 Trinickia soli str. GP25-8 "Trinickia soli strain GP25-8 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is primarily isolated from soil environments, indicating its adaptation to terrestrial habitats where it likely plays a role in nutrient cycling and soil health.↵↵The Gram-negative nature of Trinickia soli GP25-8 suggests that it possesses a complex outer membrane structure, which may confer certain advantages in terms of environmental resilience and interactions with other soil microorganisms. The rod shape is typical of many soil bacteria and may contribute to its motility and ability to colonize various niches within the soil matrix.↵↵Given its specific growth temperature, Trinickia soli GP25-8 may be particularly well-suited to temperate climates, where it can contribute to the microbial diversity and functionality of soil ecosystems. Understanding the physiological traits of this strain could provide insights into its potential roles in soil ecology, including its interactions with plants and other soil-dwelling microorganisms. This could further illuminate the importance of Trinickia soli GP25-8 in maintaining soil health and ecosystem balance in its native habitat." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia soli Gram-negative rod non-motile aerobic 29 mesophilic soil 380675 PNYB00000000.1 Bac0002862 Aeromonas hydrophila subsp. hydrophila ATCC 7966 "Aeromonas hydrophila subsp. hydrophila ATCC 7966 is a Gram-negative, rod-shaped bacterium that thrives best at mesophilic temperatures (optimal growth around 30-37°C). It is classified as a heterotroph due to its reliance on organic compounds for nutrition and is categorized as a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments. This adaptability allows it to colonize various body sites in different species, including freshwater habitats, the intestines of warm-blooded animals, and even humans. As a member of the Aeromonadaceae family, A. hydrophila subsp. hydrophila is known for its versatile metabolic capabilities. In aquatic ecosystems, it can be found in both freshwater and brackish environments, often associated with fish and amphibians, where it plays a role in nutrient cycling. In the human body, it can be implicated in gastrointestinal infections, particularly in immunocompromised individuals, and is linked to wound infections after exposure to contaminated water. The bacterium's pathogenic potential is attributed to its production of virulence factors, including enterotoxins and various enzymes that facilitate tissue invasion and immune evasion. Notably, A. hydrophila is capable of producing biofilms, which enhance its survival in hostile environments and contribute to its persistence in freshwater systems and clinical settings. Beyond its pathogenicity, Aeromonas hydrophila subsp. hydrophila is also of interest in aquaculture due to its role in fish diseases and potential applications in biotechnology. Researchers are exploring its properties for bioremediation and enzyme production, indicating its versatility in environmental and industrial contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila ATCC 7966 Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Homo sapiens Chains - Pairs - Singles 380703 NC_008570.1 Bac0002863 Hydrogenobaculum sp. Y04AAS1 "Hydrogenobaculum sp. (strain Y04AAS1) is a terrestrial thermoacidophile chemolithoautotrophic bacterium isolated from Obsidian Pool, Yellowstone National Park, a terrestrial hot spring. It grows optimally at 58 degrees Celsius and pH 4, and acquires energy through the oxidation of hydrogen (??????knallgas?????? reaction) or reduced sulfur compounds. Like all Aquificaceae, Hydrogenobaculum sp. is able to fix CO2 using the ??????B-type?????? reductive tricarboxylic acid (TCA) cycle. It plays an important role in the biogeochemical cycling in these hot Springs. (modified from PubMed 16988757 and 19136599). (EBI Integr8)" Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Hydrogenobaculum Hydrogenobaculum sp. Y04AAS1 Y04AAS1 Negative Rod No 2 Aerobe 58 Thermophilic Aquatic Free living Nonsporulating 380749 NC_011126.1 Bac0002864 Panacagrimonas perspica str. DSM 26377 Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Panacagrimonas Panacagrimonas perspica 381431 SOBT00000000.1 Bac0002865 Cupriavidus necator H16 "Cupriavidus necator H16 is a Gram-negative, rod-shaped bacterium recognized for its versatile metabolic capabilities, functioning as both a heterotroph and a chemoautotroph. This microbe thrives optimally at 30.0°C, demonstrating an ability to adapt to specialized habitats where it can utilize various energy sources. As a facultative aerobe, Cupriavidus necator H16 can grow in both the presence and absence of oxygen, which allows it to occupy diverse environmental niches and utilize different metabolic pathways depending on the availability of oxygen.↵↵The unique metabolic flexibility of Cupriavidus necator H16 enables it to engage in significant biogeochemical processes. Its capacity to perform chemoautotrophy suggests a role in carbon cycling, particularly in environments where organic carbon is limited. This trait may facilitate its survival and persistence in specialized habitats that are often subject to fluctuations in nutrient availability. Furthermore, the ability to switch between metabolic modes highlights its ecological adaptability, potentially contributing to its importance in bioremediation and bioenergy applications, where it may play a role in the degradation of pollutants or the production of biofuels. Overall, Cupriavidus necator H16 exemplifies the complexity of microbial life in specialized environments, showcasing how adaptability to energy sources and oxygen levels can influence ecological interactions and nutrient dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator Negative Rod Yes 1 2 Facultative aerobe 30 Heterotroph - Chemoautotroph Mesophilic Specialized Free living 381666 NC_008313.1 Bac0002866 Thermocrinis minervae "Thermocrinis minervae is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 45.0°C. This microbe is characterized as a lithotroph and chemotroph, indicating its ability to derive energy from inorganic compounds as well as organic substrates. Additionally, T. minervae is classified as a microaerophile, suggesting that it requires reduced levels of oxygen for optimal growth, which is typical of certain thermophilic and extremophilic microorganisms.↵↵The environmental niche of Thermocrinis minervae is likely associated with high-temperature habitats where microaerophilic conditions prevail. Such environments could include geothermal hot springs or deep-sea hydrothermal vents, where the temperature and chemical composition facilitate the growth of specialized microbial communities. The metabolic versatility of T. minervae, utilizing both lithotrophic and chemotrophic pathways, may play a significant role in biogeochemical cycling within these extreme ecosystems.↵↵Understanding the characteristics of Thermocrinis minervae enhances our knowledge of microbial life in extreme environments and underscores the potential for such organisms to contribute to nutrient cycling and energy flow in their respective habitats." Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Thermocrinis Thermocrinis minervae Gram-negative rod microaerophile 45 lithotroph; chemotroph thermophilic 381751 NZ_LT670846.1 Bac0002867 Pseudomonas paraeruginosa PA7 "Pseudomonas paraeruginosa PA7 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells. This strain thrives optimally at a temperature of 25.0 °C and is classified as a heterotroph, utilizing organic compounds as its primary energy source. As an aerobic organism, P. paraeruginosa PA7 requires oxygen for its metabolic processes, which aligns with its ability to inhabit diverse environments.↵↵The adaptability of P. paraeruginosa PA7 to multiple habitats suggests a versatile ecological role, allowing it to occupy various niches in natural and artificial ecosystems. This adaptability may also contribute to its potential interactions with other microbial communities, possibly influencing nutrient cycling and biogeochemical processes in its surroundings. Understanding the specific ecological functions of P. paraeruginosa PA7 can provide insights into its role in microbial diversity and ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas paraeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 381754 NC_009656.1 Bac0002868 Aeromonas salmonicida subsp. salmonicida A449 "Aeromonas salmonicida has been recognized as a pathogen of fish for over 100 years. In 1894 Emmerich and Weibel made the first report of its isolation during a disease outbreak at a Bavarian brown trout hatchery. The manifestations of the disease include furuncle-like swelling and, at a later stage, ulcerative lesions on infected trout. Since that time a number of subspecies of Aeromonas salmonicida have been recognized, although the taxonomy of the species is far from settled. While Aeromonas salmonicida was traditionally thought of as a pathogen of salmonids, global reports now confirm that this pathogen has been associated with clinical or covert disease in a variety of salmonid and non-salmonid species in freshwater, brackish water and sea water. Aeromonas salmonicida (strain A449) was isolated from a brown trout in the Eure River, France in 1975 and harbors one chromosome and 5 plasmids. Comparison to the related A.hydrophilia ATCC 7966 (AERHH) show the presence of numerous insertion sequence, some of which are still active and various other mobile elements lreading to substantial genome rearrangements. A.salmonicida is no longer mobile and has also recently lost a type IV and type VI secretion systems, thus probably avoiding the host immune system. It seems to be undergoing genome decay and adaptation to its specific host (adapted from PMID 18801193). (HAMAP: AERS4)" Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida A449 Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living Salmo trutta- Homo sapiens No 382245 NC_004924.1 Bac0002869 Roseiflexus castenholzii DSM 13941 "Roseiflexus is a filamentous anoxygenic phototroph, one of the green filamentous bacteria. This lineage is placed on the deepest branch of all photosynthetic bacteria. R.castenholzii HL08 was isolated from a microbial mat in a Japanese hot spring. It is able to grow photoheterotrophically under anaerobic light conditions and also chemoheterotrophically under aerobic dark conditions. Optimal growth occurs at 50 degrees C and pH 7.5-8.0. The cells contain bacteriochlorophyll (Bchl) a and gamma-carotene derivatives as photosynthetic pigments, but lack Bchl c and chlorosomes, a type of light-harvesting structure. Like many other phototrophic bacteria it has gliding motility. Comparative genomics indicates that it appears to have the genetic capacity for CO2 reduction via the 3-hydroxypropionate pathway (adapted in part from PubMed 11837302 and 17635550). (EBI Integr8)" Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus castenholzii DSM 13941 Negative Filamentous Yes 1 1 Aerobe; anaerobe 50 Photosynthetic - Photoautotroph Thermophilic Aquatic Free living Nonsporulating No 383372 NC_009767.1 Bac0002870 Erythrobacter sp. JL475 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. JL475 383381 JMIV00000000.1 Bac0002871 Xanthomonas oryzae pv. oryzicola BLS256 "Xanthomonas oryzae pv. oryzicola BLS256 is a rod-shaped, Gram-negative bacterium that is classified as an aerobe and is typically associated with host organisms. This microbe is part of the Xanthomonadaceae family and is known to thrive in environments where it can interact closely with its host, indicating its adaptation to a host-associated habitat. The aerobic nature of X. oryzae pv. oryzicola suggests that it relies on oxygen for its metabolic processes, which may influence its distribution and survival in various ecological niches.↵↵The rod shape of this bacterium is characteristic of many members within the Xanthomonas genus, contributing to its ability to colonize and persist in plant tissues. This morphological trait may enhance its motility and colonization capabilities in host environments, potentially facilitating interactions with plant immune systems. ↵↵Understanding the ecological role of Xanthomonas oryzae pv. oryzicola BLS256 can provide insights into its dynamics within agricultural systems, particularly in rice cultivation, where interactions with the host plant could influence disease management strategies. The bacterium's aerobe status and host-associated lifestyle may also offer perspectives on its role in nutrient cycling and plant health within its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living 383407 NC_017267.2 Bac0002872 Pseudoalteromonas sp. BSi20311 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. BSi20311 383911 BADU00000000.1 Bac0002873 Ornithinimicrobium cerasi Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium cerasi 384677 OBQK00000000.1 Bac0002874 Cycloclasticus sp. P1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus sp. P1 385025 NC_018697.1 Bac0002875 Thermophagus xiamenensis "Thermophagus xiamenensis is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 45.0°C and exhibits strict anaerobic growth conditions. This thermophilic microbe has been isolated from environments characterized by high temperatures, indicating its adaptive mechanisms to extreme conditions. The Gram-negative cell wall structure of T. xiamenensis suggests a thin peptidoglycan layer and an outer membrane, which may confer advantages in nutrient uptake and resistance to certain environmental stresses.↵↵In anaerobic environments, T. xiamenensis likely utilizes fermentation pathways to metabolize organic compounds, enabling it to survive and proliferate in conditions devoid of oxygen. The ability to thrive at elevated temperatures may influence its metabolic rates and enzymatic activities, potentially allowing it to outcompete other microorganisms in similar habitats. ↵↵Research on T. xiamenensis may provide valuable insights into the metabolic processes of thermophilic bacteria and their applications in biotechnology, particularly in bioprocessing and bioenergy production. Furthermore, studying its adaptations to high-temperature anaerobic environments can enhance our understanding of microbial life in extreme habitats, such as hydrothermal vents and geothermal soils, highlighting the versatility and resilience of microbial communities in extreme ecological niches." Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Thermophagus Thermophagus xiamenensis Gram-negative rod anaerobic 45 thermophilic 385682 FONA00000000.1 Bac0002876 Salinibacterium xinjiangense "Salinibacterium xinjiangense is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolic requirements and non-spore-forming nature. This microbe exhibits optimal growth at a temperature of 16.0 °C, suggesting it thrives in cooler environments, which may influence its ecological niches. The Gram-positive cell wall structure of S. xinjiangense indicates the presence of a thick peptidoglycan layer, which is typical for this group of bacteria and may contribute to its survival in specific habitats.↵↵Given its aerobic nature, S. xinjiangense likely relies on oxygen for its metabolic processes, which may limit its distribution to oxic zones within its preferred habitats. While the specific ecological roles of S. xinjiangense are not detailed, its adaptation to cooler temperatures and aerobic conditions suggests a potential association with saline environments where such conditions prevail. This unique combination of traits may enable S. xinjiangense to play a role in biogeochemical cycles within saline ecosystems, particularly in nutrient cycling processes where temperature and oxygen levels fluctuate. Understanding the ecological implications of S. xinjiangense could shed light on the adaptations of microorganisms to extreme environments and their contributions to ecosystem health and functioning." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Salinibacterium Salinibacterium xinjiangense Gram-positive rod non-motile aerobic 16 psychrotolerant non-spore-forming 386302 OCST00000000.1 Bac0002877 Hoylesella timonensis "Hoylesella timonensis is a Gram-negative, nonsporulating bacterium characterized as a chemoheterotroph. This microbe thrives in diverse habitats, demonstrating its adaptability to various environmental conditions. As an anaerobic organism, Hoylesella timonensis relies on the absence of oxygen for its metabolic processes, which influences its ecological niche and interactions within microbial communities.↵↵The ability to utilize organic compounds as energy sources underscores its role in nutrient cycling, particularly in anaerobic environments where it may contribute to the degradation of organic matter. This trait aligns with the ecological functions of many anaerobic bacteria, facilitating the breakdown of complex substrates and promoting the recycling of nutrients in ecosystems such as sediments, wetlands, and the gastrointestinal tracts of animals.↵↵Given its nonsporulating nature, Hoylesella timonensis may exhibit specific survival strategies to endure unfavorable conditions, yet the specifics of these adaptations remain to be fully elucidated. The presence of this organism in multiple habitats highlights its potential ecological significance, suggesting that it may play a role in maintaining microbial diversity and functionality in anaerobic environments. Further research into its metabolic pathways and ecological interactions could provide insights into its contributions to biogeochemical processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella timonensis Negative No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 386414 PNGI00000000.1 Bac0002878 Clostridium novyi NT "Clostridium novyi-NT, a Gram +, spore-forming bacteria, is an experimentally developed attenuated strain of pathogenic C.novyi. To do so, the major systemic toxin gene-containing episome has been deleted. It was created to be used as an bacteriolytic anti-tumor agent. An anaerobic bacterium is ideally suited as an anti-tumor agent as the only hypoxic regions within mammals are tumors. Intravenous injection of C.novyi-NT spores in rabbits and mice has produced anti-tumor effects without excessive toxicity. While the spores are very stable, the vegetative form is very sensitive to oxygen. (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium novyi NT Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Terrestrial Free living Pairs - Singles Sporulating No 386415 NC_008593.1 Bac0002879 Escherichia coli O157:H7 str. Sakai "Escherichia coli O157:H7 str. Sakai is a gram-negative, rod-shaped bacterium that falls within the mesophilic temperature preference category, thriving optimally between 20–45°C. This strain is classified as a heterotroph, meaning it derives its energy from organic compounds, and it is considered a facultative anaerobe, capable of surviving in both aerobic and anaerobic conditions. As a member of the normal gut flora in many animals, E. coli can inhabit various body sites, including the intestines of humans and other warm-blooded organisms, where it plays a significant role in digestion. The gram-negative nature of E. coli O157:H7 str. Sakai indicates that it has a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its pathogenicity. The rod-shaped (bacillus) morphology facilitates its motility and colonization in the gastrointestinal tract. As a mesophilic organism, it maintains robust metabolic activities within the temperature range found in the human body, making it well-adapted for survival. E. coli O157:H7 str. Sakai is known for its association with severe foodborne illness, including hemolytic uremic syndrome (HUS). It produces Shiga toxin, which can cause serious complications, primarily affecting the kidneys. This strain of E. coli is often linked to contaminated food (especially undercooked beef) and water sources. The presence of E. coli O157:H7 in food safety testing is a critical concern given its potential for outbreaks. Furthermore, genetic studies have revealed insights into its virulence factors and mechanisms of antibiotic resistance, highlighting its significance in public health and microbiological research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli O157:H7 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 386585 NC_002127.1 Bac0002880 Frondihabitans australicus str. DSM 17894 "Frondihabitans australicus strain DSM 17894 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and is characterized by its non-spore-forming nature. This microbe thrives optimally at a temperature of 25.0°C, suggesting a preference for mesophilic environments, which may align with its potential habitats in temperate regions. ↵↵The Gram-positive nature of F. australicus indicates the presence of a thick peptidoglycan layer, which is a common feature among bacteria that can confer certain advantages, such as increased resistance to environmental stresses. The rod morphology may facilitate motility and colonization in various ecological niches. ↵↵Although specific ecological roles and interactions are not detailed, the aerobic requirement suggests that F. australicus may play a significant role in carbon cycling processes, particularly in environments where organic matter is decomposed in the presence of oxygen. The absence of sporulation indicates a reliance on vegetative growth for survival and reproduction, which may limit its persistence in extreme conditions but could also facilitate rapid population increases in suitable environments.↵↵Overall, Frondihabitans australicus str. DSM 17894 exemplifies a microbial entity adapted to aerobic conditions with specific temperature preferences, which may influence its ecological interactions and contribute to the microbial diversity within its habitat." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frondihabitans Frondihabitans australicus Gram-positive rod non-motile aerobic 25 mesophilic non-spore-forming 386892 RBKS00000000.1 Bac0002881 Mycolicibacter senuensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter senuensis 386913 QMEX00000000.1 Bac0002882 Nitratiruptor sp. SB155-2 "Nitratiruptor sp. (strain SB155-2) is a deep-sea vent microaerobic bacterium phylogenetically associated with the epsilonproteobacteria. This strain was isolated in the vicinity of a deep-sea vent occurring in the Iheya North hydrothermal field, in Okinawa, Japan. This rod-shaped bacterium grows chemolithoautotrophically and can utilize a wide spectrum of electron donors and acceptors (i.e. hydrogen, sulfur compounds, nitrate and oxygen). It can occupy different ecological niches, and its metabolic versatility probably enables it to adapt to the geochemical variability in deep-sea hydrothermal environments. Furthermore, fitting to its metal-rich niche, this strain contains a wide array of mineral transport systems including detoxification mechanisms of heavy metals such as arsenate, cadmium, and copper. It probably has some symbiotic relationship with vent animals. Nitratiruptor sp. (strain SB155-2) genome lacks orthologs of virulence genes of pathogenic epsilonproteobacteria, such as type IV secretion pathway and cag pathogenicity island genes. However, it possesses many virulence genes that were identified in pathogenic epsilonproteobacteria, including genes for virulence factor mviN, hemolysin, invasion antigen ciaB, and lytic murein transglycosylase. Some of the most remarkable virulence genes in deep-sea vent epsilonproteobacteria belong to the N-linked glycosylation (NLG) gene cluster. It is increasingly recognized that pathogenic epsilonproteobacteria have virulence determinants that are not classified as virulence genes in general but do play important roles in virulence. For example, Helicobacter species have a H2-uptake hydrogenase encoded outside the pathogenicity island, which is essential for its efficient initial colonization. Interestingly, strain SB155-2 has three different hydrogenases (one each of H2-uptake type, H2-sensing type, and H2-evolving type). (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitratiruptor Nitratiruptor sp. SB155-2 SB155-2 Negative Rod No 1 2 Anaerobe Chemolithoautotroph Thermophilic Specialized Free living No 387092 NC_009662.1 Bac0002883 Flavobacterium hercynium "Flavobacterium hercynium is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This species is part of the broader Flavobacterium genus, which is known for its diverse ecological roles, particularly in aquatic habitats. The rod shape of F. hercynium may facilitate motility and nutrient acquisition in its natural environment, although specific details regarding its motility mechanisms are not documented.↵↵As a Gram-negative organism, F. hercynium possesses a characteristic outer membrane, which contributes to its structural integrity and may influence its interactions with other microorganisms in its habitat. The bacterium's preference for aerobic conditions suggests that it plays a role in the cycling of organic matter, possibly participating in the degradation of complex organic compounds in oxygen-rich environments.↵↵Understanding the ecological functions of Flavobacterium hercynium could provide insights into microbial community dynamics, particularly in freshwater systems where it may contribute to nutrient cycling and organic matter decomposition. Its presence in these ecosystems underscores the importance of studying such microorganisms to unravel their contributions to biogeochemical processes. Further research could elucidate its specific interactions and roles within microbial communities, enhancing our comprehension of ecological balances in aquatic environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium hercynium Gram-negative rod motile aerobic 25 mesophilic 387094 MUGW00000000.1 Bac0002884 Levilactobacillus brevis ATCC 367 "Levilactobacillus brevis ATCC 367 is a Gram-positive, rod-shaped bacterium that typically exists in chains or as single cells. This microbe exhibits facultative anaerobic respiration, allowing it to thrive in both the presence and absence of oxygen. Optimal growth occurs at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵L. brevis has been isolated from diverse habitats, suggesting its versatility and adaptability in various ecological niches. This bacterium is commonly associated with fermented foods and beverages, where it plays a significant role in the production of lactic acid, contributing to flavor development and preservation. The ability of L. brevis to persist in different environments may be partly attributed to its chain-forming arrangement, which can enhance its survival in fluctuating conditions.↵↵Moreover, the facultative anaerobic nature of L. brevis allows it to exploit both aerobic and anaerobic metabolic pathways, possibly enhancing its role in fermentative processes and interactions with other microbial communities. This adaptability not only underscores its significance in food fermentation but also may reflect a broader ecological impact, as it can influence the microbial dynamics within its habitat. Overall, L. brevis represents a key player in fermentation ecosystems, exemplifying the intricate relationships between microorganisms and their environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 387344 NC_008499.1 Bac0002885 Marixanthomonas ophiurae str. KMM 3046 "Marixanthomonas ophiurae str. KMM 3046 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, exhibiting optimal growth at a temperature of 25.0°C. This strain is characterized by its non-spore-forming nature, which suggests a lifestyle reliant on stable environmental conditions for survival rather than the resilience provided by sporulation.↵↵The Gram-negative cell wall structure of M. ophiurae str. KMM 3046 is indicative of a complex outer membrane, which may contribute to its ability to interact with its surroundings, including potential interactions with other microorganisms or host organisms. The aerobic requirement implies that this bacterium relies on oxygen for its metabolic processes, which may influence its ecological niches and associations within various habitats.↵↵Given its optimal growth temperature of 25.0°C, M. ophiurae str. KMM 3046 may be well-suited to environments such as marine or freshwater ecosystems, where temperatures in this range are commonly found. The absence of spore formation may limit its survival in extreme or fluctuating conditions, suggesting that it may inhabit more stable habitats where consistent resources are available. This trait may reflect a specialized adaptation to ecological niches that support aerobic microbial communities, highlighting the importance of physiological traits in determining microbial diversity and distribution in aquatic environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Marixanthomonas Marixanthomonas ophiurae Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 387659 QVID00000000.1 Bac0002886 Methanobrevibacter sp. 87.7 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. 87.7 387957 MRCT00000000.1 Bac0002887 Chroococcidiopsis cubana SAG 39.79 Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis cubana 388085 RSCK00000000.1 Bac0002888 Cyclobacterium lianum Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cyclobacterium Cyclobacterium lianum 388280 FRCY00000000.1 Bac0002889 Pseudoalteromonas sp. BSi20652 str. Bsi20652 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. BSi20652 388384 BADT00000000.1 Bac0002890 Aliivibrio fischeri MJ11 "Aliivibrio fischeri MJ11 is a Gram-negative, rod-shaped bacterium that exists as single cells and demonstrates facultative anaerobic metabolism. This microorganism is a heterotroph, utilizing organic compounds as its energy source, which allows it to thrive in a variety of habitats. The optimal growth temperature for A. fischeri MJ11 is 20.0°C, suggesting a preference for cooler environments, which may reflect its adaptation to marine or brackish ecosystems.↵↵The ability of A. fischeri MJ11 to function as a facultative anaerobe indicates its metabolic versatility, allowing it to survive in both oxygen-rich and oxygen-poor conditions. This trait is particularly advantageous in fluctuating environmental conditions, enhancing its ecological resilience. ↵↵In summary, the unique combination of its Gram-negative cell structure, rod shape, and heterotrophic lifestyle positions Aliivibrio fischeri MJ11 as a potentially important player in nutrient cycling within its habitats, as it may contribute to the breakdown of organic matter and the overall health of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio fischeri Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Symbiotic Singles 388396 NC_011184.1 Bac0002891 Planktothrix agardhii NIVA-CYA 126/8 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix agardhii 388467 ASAK00000000.1 Bac0002892 Candidatus Protochlamydia naegleriophila str. KNic Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila 389348 NZ_LN879502.1 Bac0002893 Borreliella afzelii PKo "Borreliella afzelii PKo is a Gram-negative, aerobic bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe is primarily associated with host environments, indicating a potential reliance on host interactions for survival and proliferation. The Gram-negative nature of Borreliella afzelii PKo suggests the presence of a complex outer membrane, which may contribute to its adaptability in diverse host-associated habitats. ↵↵As an aerobe, this species requires oxygen for its metabolic processes, which may influence its distribution and ecological roles within host organisms. The single-cell arrangement of Borreliella afzelii PKo could facilitate efficient nutrient uptake and motility, allowing it to navigate within host tissues effectively. ↵↵While specific pathogenicity or interactions with host immune systems are not detailed here, the association with hosts suggests a potential for influencing host health or disease dynamics. Further research into Borreliella afzelii PKo's ecological roles could provide insights into its interactions with other microbial communities within host organisms or its responses to varying oxygen levels in different environments. Understanding these dynamics is critical for elucidating the broader implications of Borreliella afzelii PKo in microbiological and ecological contexts." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella afzelii Negative Spirilla No 2 Aerobe Mesophilic HostAssociated Free living Singles 390236 NC_017240.1 Bac0002894 Labedella gwakjiensis str. DSM 21548 "Labedella gwakjiensis str. DSM 21548 is a Gram-positive, rod-shaped bacterium that exhibits aerobic growth and is characterized by its non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for moderate environmental conditions typically found in mesophilic habitats. ↵↵The Gram-positive nature of Labedella gwakjiensis suggests the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its stability and resilience under aerobic conditions. The rod shape of this bacterium may play a role in its motility and surface interactions, although specific mechanisms are not detailed in the available traits.↵↵Research on Labedella gwakjiensis could provide insights into its metabolic pathways and potential applications in biotechnology, particularly in processes that require aerobic conditions. The absence of sporulation in this strain implies that it may rely on other survival strategies in fluctuating environmental conditions, which warrants further investigation into its ecological role and interactions within its habitat. Understanding the physiological traits of Labedella gwakjiensis can contribute to a broader comprehension of microbial diversity and functionality in aerobic ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Labedella Labedella gwakjiensis Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 390269 PYAU00000000.1 Bac0002895 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 "Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is a facultative anaerobe, demonstrating versatility in its metabolic processes by thriving in both aerobic and anaerobic environments. It exhibits optimal growth at 42.0°C, which aligns with its use in dairy fermentation processes, particularly in the production of yogurt and other fermented milk products. ↵↵L. delbrueckii subsp. bulgaricus is known to inhabit various ecological niches, particularly those associated with dairy environments, where it plays a crucial role in the fermentation and preservation of milk. This microbe contributes to the development of desirable flavors and textures in dairy products while also exerting probiotic effects that may benefit gut health in consumers.↵↵The ability of Lactobacillus delbrueckii subsp. bulgaricus to thrive at elevated temperatures may provide insights into its resilience and adaptability in diverse habitats, particularly under conditions that might inhibit the growth of other microbial competitors. This trait underscores its significance in traditional and industrial fermentation, highlighting the potential for optimizing fermentation processes in warm climates or during summer months." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 390333 NC_008054.1 Bac0002896 Thermotoga petrophila RKU-1 "Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) is a motile, anaerobic, heterotrophic, rod-shaped bacterium. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 47 and 88 degrees Celsius, with an optimum at 80 degrees and at pH between 5.2 and 9, with an optimum at 7.0. It reduces elemental sulfur to hydrogen sulfide. Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) was isolated from a deep subterranean oil reservoir in Niigata, Japan. (EBI Integr8)" Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila RKU-1 Negative Rod No 1 2 Anaerobe 80 Heterotroph Hyperthermophilic Aquatic Free living Nonsporulating No 390874 NC_009486.1 Bac0002897 Salinivibrio sharmensis str. DSM 18182 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Salinivibrio Salinivibrio sharmensis 390883 MUFC00000000.1 Bac0002898 Vreelandella olivaria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella olivaria 390919 AP019416.1 Bac0002899 Stenotrophomonas maltophilia R551-3 "Stenotrophomonas maltophilia R551-3 is a Gram-negative, rod-shaped bacterium that thrives best at moderate temperatures, classifying it as a mesophilic heterotroph and operating primarily as a facultative anaerobe. This organism is notable for its ability to adapt to a wide range of environments, including soil, water, and even various clinical settings such as hospital equipment and human hosts. As a Gram-negative bacterium, Stenotrophomonas maltophilia possesses a thin peptidoglycan layer sandwiched between an inner and an outer membrane, contributing to its resilience against environmental stressors, including antibiotics. Its rod shape allows for efficient motility, which can be advantageous in various ecological niches. The mesophilic nature of this microbe indicates an optimal growth temperature around 30-37°C, making it particularly well-suited for colonization in warm-blooded hosts and other moderated environments. As a heterotroph, S. maltophilia obtains its energy through the consumption of organic compounds, which allows it to thrive in nutrient-rich environments. As a facultative anaerobe, it can switch between aerobic respiration and fermentation, enabling it to survive in both oxygen-rich and low-oxygen conditions, a versatile feature that enhances its survival prospects. This microorganism is known for its clinical significance, particularly in immunocompromised patients. It is often implicated in respiratory infections and can form biofilms on medical devices, contributing to its persistence in healthcare settings. Additionally, S. maltophilia has garnered attention for its intrinsic resistance to many common antibiotics, prompting ongoing research into alternative therapeutic strategies and the mechanisms behind its resilience. The microbe's ability to degrade various environmental pollutants also highlights its potential role in bioremediation efforts, showcasing its ecological versatility." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia R551-3 Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living Homo sapiens No 391008 NC_011071.1 Bac0002900 Thermosipho melanesiensis BI429 "Thermosipho melanesiensis (strain BI429 / DSM 12029) is a Gram-negative, thermophilic, anaerobic rod-shaped bacterium. It occurs generally singly or in pair. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 45 and 89 Celsius degrees with an optimum at 70 degrees. Its optimal pH is 6.5 and optimal salinity is 30 grams of NaCl per liter. The type strain BI429 / DSM 12029 was isolated from the gills of a deep-sea vent hydrothermal mussel, Bathymodiolus brevior from the Lau Basin in the Southwestern Pacific Ocean. As its minimal growth temperature is 45 degrees, it was dormant in the gills of B. brevior. (EBI Integr8)" Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho melanesiensis BI429 Negative Rod Yes 1 2 Anaerobe 70 Thermophilic HostAssociated Free living Bathymodiolus brevior Chains - Pairs - Singles No 391009 NC_009616.1 Bac0002901 Paraburkholderia phymatum STM815 "Paraburkholderia phymatum STM815 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic respiration and is nonsporulating. This microbe is primarily host-associated, indicating a close relationship with its host organism, which may influence its physiological characteristics and ecological roles. ↵↵As a member of the Burkholderia genus, P. phymatum STM815 is likely to engage in complex interactions with its host, potentially contributing to nutrient cycling or plant health in symbiotic relationships. The facultative aerobic nature of this bacterium suggests it can adapt to varying oxygen levels, which may enhance its survival in diverse environments associated with its host. ↵↵This adaptability to both aerobic and anaerobic conditions, combined with its nonsporulating trait, positions P. phymatum STM815 as a potentially significant player in the microbiome of its host, capable of thriving in fluctuating conditions without the need for sporulation as a survival strategy. Further research into its specific interactions and functions within its ecological niche could provide valuable insights into its role in host health and microbial community dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia phymatum Negative Rod No 1 2 Facultative aerobe Mesophilic HostAssociated Free living Nonsporulating 391038 NC_010625.1 Bac0002902 Granulibacter bethesdensis CGDNIH1 "Acetobacteraceae are alphaproteobacteria including the acetic acid bacteria, which incompletely oxidize carbohydrates and alcohols, leading to production of vinegar among other chemicals. They are found worldwide on plant material.G.bethesdensis is a non-motile Gram-negative rod able to growth on methanol as its sole carbon source, and encodes the enzymes necessary for conversion of alcohols to acetic acid making it both an acetic acid bacterium and a methylotroph. Strain CGDNIH1 was identified in excised lymph nodes from a 39 year old male patient with chronic granulomatous disease (CGD), a rare inherited disease of the phagocyte NADPH oxidase system causing defective production of toxic oxygen metabolites, impaired bacterial and fungal killing, and recurrent life-threatening infections with Staphylococcus aureus, Serratia marcescens, Burkholderia cepacia complex Nocardia and Aspergillus species, and now Granulibacter bethesdensis. This is the first reported case of invasive human disease caused by any of the Acetobacteraceae. It is surrounded by a capsule, which might confer increased resistance. (HAMAP: GRABC)" Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Granulibacter Granulibacter bethesdensis CGDNIH1 Negative Rod No 1 2 Mesophilic Multiple Free living Homo sapiens Yes 391165 NC_008343.2 Bac0002903 Vibrio sp. 16 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 16 391586 ACCV00000000.1 Bac0002904 Roseobacter litoralis Och 149 Roseobacter litoralis Och 149.This type strain for the species was collected from seaweed and isolated by direct plating. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseobacter Roseobacter litoralis Och 149 Negative Rod Yes Aerobic Phototroph - Photosynthetic Mesophilic Aquatic Free living 391595 NC_015728.1 Bac0002905 gamma proteobacterium HTCC5015 Pseudomonadati Pseudomonadota Gammaproteobacteria gamma proteobacterium HTCC5015 391615 ABSJ00000000.1 Bac0002906 Octadecabacter arcticus 238 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Octadecabacter Octadecabacter arcticus 391616 NC_020909.1 Bac0002907 Phaeobacter inhibens DSM 17395 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter inhibens 391619 NC_018287.1 Bac0002908 Octadecabacter antarcticus 307 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Octadecabacter Octadecabacter antarcticus 391626 NC_020907.1 Bac0002909 Desulfovibrio vulgaris DP4 "Desulfovibrio vulgaris subsp. vulgaris (strain DP4) is an anaerobic bacterium phylogenetically associated with the delta subdivision of the Proteobacteria. Desulfovibrio vulgaris is a sulfate reducer commonly found in a variety of soil and aquatic environments. It respires by electron transfer using the heme group in c-type cytochromes, and can corrode metal by cathodic depolarization using the same process. Its preferred carbon substrates are lactate and pyruvate. The ability of this species to reduce Uranium (VI)ox to Uranium (IV)red makes it a good candidate for bioremediation of sites with uranium-contaminated groundwater. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars of losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris DP4 Negative Rod Yes 1 2 Anaerobe 25 Mesophilic Multiple Free living Singles Nonsporulating No 391774 NC_008751.1 Bac0002910 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 "Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 is a mesophilic, heterotrophic microbe that thrives in a wide range of temperatures, typically between 10°C and 45°C, making it a opportunistic inhabitant of various environments. As a heterotroph, it relies on organic compounds as its primary energy source, utilizing a variety of metabolic pathways to generate energy. This microbe is a Gram-positive, non-motile rod-shaped bacterium, typically measuring between 0.5-1.5 μm in width and 1-5 μm in length. Its cells typically inhabit the gastrointestinal tract of infants, where they play a crucial role in the development of the infant's gut microbiome. Bifidobacterium longum subsp. infantis ATCC 15697 is an obligate anaerobe, meaning it requires a low-oxygen environment to survive and thrive. In fact, it is unable to grow in the presence of oxygen and is extremely sensitive to even small amounts of oxygen. This adaptability to low-oxygen environments is thought to be an important factor in its ability to colonize the infant gut, where oxygen levels are typically low. This microbe has also been shown to play a vital role in the human gut microbiome, particularly during the early stages of life. Research has highlighted its importance in the digestion of complex carbohydrates, production of short-chain fatty acids, and regulation of the immune system. In addition, studies have demonstrated its ability to produce antimicrobial peptides and other compounds that promote the growth of beneficial gut bacteria. Furthermore, Bifidobacterium longum subsp. infantis ATCC 15697 has been implicated in various diseases, including necrotizing enterocolitis, a life-threatening condition that affects premature infants. The development of probiotic therapies targeting this microbe has shown promise in mitigating the severity of this condition. Overall, the unique characteristics and functional adaptations of Bifidobacterium longum subsp. infantis ATCC 15697 make it an important component of the human gut microbiome, with significant implications for human health and disease." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters-Pairs-Singles Nonsporulating 391904 NC_011593.1 Bac0002911 Methylocystis heyeri str. H2 "Methylocystis heyeri str. H2 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This microbe does not form spores, which suggests a reliance on stable environmental conditions for survival and reproduction. The absence of sporulation indicates that Methylocystis heyeri str. H2 may be sensitive to extreme stressors that often trigger spore formation in other bacterial species.↵↵Characteristically, the rod shape of Methylocystis heyeri str. H2 is indicative of its potential for motility and nutrient acquisition in its habitat. Although the specific ecological niche of this strain is not detailed, its aerobic nature points to its involvement in environments where oxygen is readily available, such as in soil or water systems where organic matter decomposition occurs.↵↵The traits of Methylocystis heyeri str. H2 suggest that it may play a role in the cycling of carbon, particularly in the oxidation of methane, a process typical of members of the Methylocystis genus. This metabolic capability could position Methylocystis heyeri str. H2 as a significant player in mitigating greenhouse gas emissions in its native environment, contributing to ecological balance and potentially influencing local carbon cycles." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylocystis Methylocystis heyeri Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 391905 NZ_CP046053.1 Bac0002912 Isoalcanivorax pacificus W11-5 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Isoalcanivorax Isoalcanivorax pacificus 391936 NZ_CP004387.1 Bac0002913 Rickettsia rickettsii str. Sheila Smith "Rickettsia rickettsii str. Sheila Smith is a Gram-negative, rod-shaped bacterium that is nonsporulating and exhibits aerobic metabolism. This strain thrives optimally at 37.0°C, a temperature that aligns with the typical physiological conditions of its host-associated habitat. As a member of the Rickettsiaceae family, R. rickettsii is part of a group of obligate intracellular pathogens that require living hosts for growth and reproduction.↵↵The nonsporulating nature of this strain indicates a reliance on host environments for survival, which is characteristic of many rickettsial species. The aerobic requirement suggests that R. rickettsii str. Sheila Smith utilizes molecular oxygen for its metabolic processes, potentially influencing its interactions with host cells and the surrounding microbiome. ↵↵The specific ecological niche of this strain underscores its adaptation to living within eukaryotic cells, where it may exploit host cellular machinery for its replication and survival. Understanding these traits provides insights into the physiological adaptations that enable Rickettsia rickettsii str. Sheila Smith to persist in host-associated environments, highlighting the intricate relationship between this bacterium and its hosts in the broader context of microbial ecology." Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Symbiotic Nonsporulating 392021 NC_009882.1 Bac0002914 Methylophaga thiooxydans "Methylophaga thiooxydans is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoautotroph, and can be found in various body sites, including soil, sediment, and aquatic environments, across all possible species. As a chemoautotroph, Methylophaga thiooxydans derives its energy from chemical reactions, specifically the oxidation of sulfur compounds, and can synthesize its own organic compounds from carbon dioxide. This microbe is an obligate aerobe, requiring oxygen to survive and grow, which is evident in its ability to thrive in environments with high oxygen levels. The gram-negative cell wall of Methylophaga thiooxydans provides it with a degree of resistance to environmental stresses, while its rod-shaped morphology allows for efficient movement and colonization of new environments. The mesophilic temperature preference of this microbe enables it to thrive in a wide range of environments, from aquatic ecosystems to soil and sediment. As a chemoautotroph, Methylophaga thiooxydans plays a crucial role in the sulfur cycle, contributing to the oxidation of sulfur compounds and the formation of sulfate. Methylophaga thiooxydans has been found to have a unique ability to oxidize dimethyl sulfide, a volatile organic compound, which contributes to the formation of acidic rain and has implications for climate regulation. This microbe's ability to thrive in diverse environments and its role in the sulfur cycle make it a significant component of many ecosystems, and its study has led to a greater understanding of the complex interactions between microorganisms and their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga thiooxydans Negative No 1 Aerobic 30 Chemolithotroph Mesophilic Marine Nonsporulating 392484 JRQD00000000.1 Bac0002915 Candidatus Brocadia sapporoensis str. 40 Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Brocadia Candidatus Brocadia sapporoensis 392547 MJUW00000000.2 Bac0002916 Chitinophaga ginsengisegetis "Chitinophaga ginsengisegetis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microbe thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a member of the Chitinophaga genus, it is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi.↵↵The non-spore-forming nature of Chitinophaga ginsengisegetis suggests that it may rely on its aerobic capabilities to survive and compete in its ecological niche, potentially affecting organic matter decomposition and nutrient cycling within its habitat. Furthermore, its Gram-negative cell wall structure may confer specific advantages in terms of environmental adaptability and resistance to certain antimicrobial agents, although the implications of this trait require further investigation.↵↵Given its optimal growth temperature of 25.0°C, Chitinophaga ginsengisegetis may inhabit temperate environments where such conditions are prevalent. This bacterium could play a significant role in the microbiome of soil or decaying organic matter, contributing to the breakdown of complex organic materials. Understanding its ecological role may provide insights into the broader implications of chitinolytic bacteria in nutrient dynamics within ecosystems." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga ginsengisegetis Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 393003 FUZZ00000000.1 Bac0002917 Paenibacillus nanensis str. DSM 22867 "Paenibacillus nanensis strain DSM 22867 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This species thrives optimally at a temperature of 37.0°C, indicating its preference for mesophilic conditions. It exhibits a facultative aerobe/anaerobe metabolism, allowing it to utilize both aerobic and anaerobic respiration depending on environmental oxygen availability.↵↵The sporulation capability of Paenibacillus nanensis is a significant trait that enables it to withstand adverse conditions, contributing to its resilience in various environments. This ability to form spores is a common feature among members of the Paenibacillus genus, which is known for its diverse ecological roles, including soil health and nutrient cycling.↵↵As a facultative organism, P. nanensis can adapt its metabolic processes in response to fluctuating oxygen levels, which may enhance its survival and ecological versatility in dynamic habitats. This adaptability suggests that P. nanensis might play a crucial role in microbial communities by contributing to the degradation of organic matter and the cycling of nutrients, particularly in environments where oxygen levels are variable. Further research into its ecological interactions could provide valuable insights into its functional roles in both soil ecosystems and potential biotechnological applications." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus nanensis Gram-positive rod facultative aerobe/anaerobe 37 mesophilic spore-forming 393251 QXQA00000000.1 Bac0002918 Microterricola gilva str. DSM 18319 "Microterricola gilva strain DSM 18319 is a Gram-positive, aerobic rod-shaped bacterium that thrives optimally at a temperature of 25.0 °C. This organism is characterized by its non-spore-forming nature, which distinguishes it from other genera within similar environmental niches. The Gram-positive classification indicates the presence of a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and resilience under certain environmental conditions.↵↵As an aerobic microbe, M. gilva requires oxygen for its metabolic processes, suggesting a potential role in the degradation of organic materials in oxygen-rich environments. The optimal growth temperature of 25.0 °C aligns with conditions commonly found in soil and other terrestrial habitats, where this bacterium may contribute to nutrient cycling and organic matter decomposition.↵↵The absence of sporulation may also imply that M. gilva relies on stable environmental conditions for survival and reproduction, which may limit its ability to withstand extreme fluctuations in its habitat. This trait highlights the ecological significance of M. gilva in environments where consistent conditions can support microbial activity, thus playing a crucial role in maintaining ecosystem balance.↵↵Overall, the physiological characteristics of Microterricola gilva str. DSM 18319 suggest it may be well-adapted to specific ecological niches within terrestrial environments, potentially contributing to soil health and microbial diversity." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microterricola Microterricola gilva Gram-positive rod aerobic 25 mesophilic non-spore-forming 393267 SHLC00000000.1 Bac0002919 Alcanivorax borkumensis SK2 "The gammaproteobacterium Alcanivorax borkumensis is a cosmopolitan marine bacterium isolated from a seawater sediment sample in the North Sea that uses oil hydrocarbons as its exclusive source of carbon and energy. Although barely detectable in unpolluted environments, A. borkumensis becomes the dominant microbe in oil-polluted waters. This unusual rod-shaped slow-growing marine hydrocarbonoclastic bacterium is able to grow on a highly restricted spectrum of substrates, predominantly alkanes-2. Using n-alkanes as a sole carbon source causes the strains to produce extracellular and membrane-bound surface-active glucose lipids. These biosurfactants (anionic glucolipids) reduce the surface tension of water, acting as a natural emulsifier, and facilitate emulsification of alkanes, enhances their bioavailability and increases the degradation rate of these hydrophobic organic substrates. Phenotypic analysis showed a restricted nutritional profile, high halotolerance, the absence of fermentative metabolism and a low G+C content. A. borkumensis has a streamlined genome with a paucity of mobile genetic elements and energy generation-related genes, but with a plethora of genes accounting for its wide hydrocarbon substrate range and efficient oil-degradation capabilities. The genome further specifies systems for scavenging of nutrients, particularly organic and inorganic nitrogen and oligo-elements, biofilm formation at the oil-water interface, biosurfactant production and niche-specific stress responses. The unique combination of these features provides A. borkumensis with a competitive edge in oil-polluted environments. This genome sequence provides the basis for the future design of strategies to mitigate the ecological damage caused by oil spills. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax borkumensis SK2 Negative Rod No 1 2 Aerobe Oligotroph Mesophilic Aquatic Free living No 393595 NC_008260.1 Bac0002920 Porphyromonas crevioricanis Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas crevioricanis oral cavity; subgingival plaque 393921 NZ_LS483447.1 Bac0002921 Bhargavaea cecembensis str. T14 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Bhargavaea Bhargavaea cecembensis 394098 LQNT00000000.1 Bac0002922 Sulfitobacter marinus "Sulfitobacter marinus is a Gram-negative, ovoid-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is part of the diverse community of marine microorganisms, reflecting its adaptation to aquatic environments. The Gram-negative cell wall structure of S. marinus contributes to its ability to interact with its surroundings, potentially influencing its nutrient uptake and interactions with other marine microorganisms.↵↵The specific growth temperature of 29.0°C suggests that S. marinus is well-suited to warm marine habitats, which may include coastal regions or areas with elevated water temperatures. This characteristic indicates a possible niche specialization, allowing S. marinus to exploit resources in environments where other microbes may struggle to thrive.↵↵Given its aerobic nature, S. marinus likely plays a role in the biogeochemical cycling of sulfur and other elements in marine ecosystems. The presence of this bacterium in the ocean could be integral to processes such as sulfur oxidation, contributing to the overall metabolic diversity and ecological balance within its habitat. Understanding its specific functions and interactions within marine communities could provide insights into the ecological roles of microbial life in oceanic environments, particularly in relation to nutrient cycling and ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter marinus Gram-negative ovoid non-motile aerobic 29 mesophilic 394264 FPAJ00000000.1 Bac0002923 Flavobacterium sp. YO64 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. YO64 394559 NRQV00000000.1 Bac0002924 Chromobacterium haemolyticum "Chromobacterium haemolyticum is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, classifying it as an aerobic organism. This microbe is notable for its ability to produce hemolysins, which facilitate the lysis of red blood cells. The presence of these hemolysins can be critical for its survival and competitive fitness in various environments. ↵↵As a member of the Chromobacterium genus, C. haemolyticum is primarily found in soil and freshwater habitats, suggesting a potential role in nutrient cycling and organic matter decomposition. The aerobic nature of this bacterium aligns with its habitat preferences, as oxygen-rich environments are conducive to its metabolic processes. ↵↵The unique biochemical capabilities of C. haemolyticum, particularly its hemolytic activity, may influence the microbial community dynamics where it resides, potentially impacting the interactions with other microorganisms. This characteristic might also suggest a role in the ecological balance of its environment, as it could affect the availability of resources and the overall health of microbial populations. Understanding the specific ecological functions of C. haemolyticum may provide insights into its contributions to soil and freshwater ecosystems, particularly regarding its interactions with both biotic and abiotic components." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium haemolyticum Gram-negative rod aerobic 394935 MUKU00000000.1 Bac0002925 Clostridium taeniosporum str. 1/k Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium taeniosporum 394958 NZ_CP017254.1 Bac0002926 Rhizobium leguminosarum bv. trifolii WSM2304 "Rhizobium leguminosarum bv. trifolii WSM2304 is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperature ranges, functioning as a chemotroph and displaying facultative anaerobic characteristics. This strain primarily colonizes the root nodules of legumes such as clover, contributing significantly to biological nitrogen fixation, a vital process that enriches soil quality and enhances plant growth. As a gram-negative organism, *R. leguminosarum* possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which plays a crucial role in its interactions with plant hosts and environmental adaptability. The rod shape of the bacterium allows for efficient motility and colonization of root surfaces, facilitating the establishment of symbiotic relationships with plant roots. Preferring mesophilic temperatures, this microbe optimally grows in temperate conditions, which are typically found in its natural habitats such as agricultural soils. As a chemotroph, *R. leguminosarum* derives its energy from chemical compounds rather than light, embodying the essence of nitrogen-fixing bacteria that convert atmospheric nitrogen into ammonia, thereby making nitrogen accessible to plants. Furthermore, its facultative anaerobic nature enables it to adapt to varying oxygen levels, thriving in both oxygen-rich environments and low-oxygen conditions within root nodules. This particular strain, WSM2304, is noteworthy for its unique ability to form effective symbiotic relationships with host plants, optimizing nitrogen fixation and supporting sustainable agricultural practices. Additionally, it is known to enhance the resistance of clover plants to various pathogens, underscoring its potential contributions to crop resilience and soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum WSM2304 Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic HostAssociated Symbiotic Pisum sativum Singles Nonsporulating No 395492 NC_011369.1 Bac0002927 Gallionella capsiferriformans ES-2 "Gallionella capsiferriformans, formerly known as Gallionella ferruginea, discovered in 1836 by Ehrenbergis, is one of the earliest-described bacteria. It is a stalk-forming and iron-oxidizing bacterium. It is a curved with one polar flagellum, an auto- and mixotrophic bacterium, living in slightly acidic to neutral pH, at temperatures between 5 and 25 degrees C. It is free-living without a stalk under pH 6; stalk production begins at or above pH 6. It has intracytoplasmic membranes. This strain was isolated from iron contaminated groundwater in Michigan (adapted from PMID 8371116). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellaceae Gallionella Gallionella capsiferriformans ES-2 Rod Yes 1 2 Aerobic Chemolithoautotroph Mesophilic Aquatic Free living No 395494 NC_014394.1 Bac0002928 Pseudomonas reinekei "Pseudomonas reinekei is a Gram-negative, non-spore-forming bacterium that demonstrates aerobic metabolism. As a member of the Pseudomonas genus, it shares characteristic features of metabolic versatility and adaptability to various environments. The Gram-negative cell wall structure of Pseudomonas reinekei typically comprises a thin peptidoglycan layer surrounded by an outer membrane, which may confer resistance to certain antibiotics and environmental stresses.↵↵The aerobic nature of Pseudomonas reinekei suggests that it requires oxygen for growth and energy production, utilizing it as a terminal electron acceptor in its respiratory metabolic processes. This characteristic may enable the species to thrive in oxygen-rich environments, such as soil and water systems where organic matter is present.↵↵Pseudomonas species, including P. reinekei, are often recognized for their ecological roles in biogeochemical cycles, particularly in the degradation of organic pollutants. Their metabolic capabilities allow them to utilize a wide range of substrates, which may contribute to their survival in diverse habitats and their potential use in bioremediation strategies.↵↵Overall, the ability of Pseudomonas reinekei to function in aerobic environments while exhibiting metabolic versatility underscores its importance in ecological processes, particularly in the cycling of nutrients and the breakdown of complex organic compounds. This trait may also reflect a broader ecological role in maintaining the health and functionality of various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas reinekei Gram-negative aerobic non-spore-forming 395598 NZ_LT629709.1 Bac0002929 Pseudomonas moorei str. KB4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas moorei 395599 RXNH00000000.1 Bac0002930 Chryseobacterium elymi str. KCTC 22547 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium elymi 395936 QNUH00000000.1 Bac0002931 Beijerinckia indica subsp. indica ATCC 9039 "Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) was originally known as Azotobacter indicus. It produces a water-soluble extracellular polysaccharide that forms a biopolymer useful for a wide range of applications to textile printing, oil and adhesive industries. This strain belongs to the Beijerinckiaceae family, which includes both methanotrophic (bacteria able to oxidize methane) and nonmethanotrophic species (like Beijerinckia indica subsp. indica). Sequencing of strains from this family presents an ideal opportunity for a comparative genomic study into the evolution and biochemistry of obligate methanotrophy. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Beijerinckiaceae Beijerinckia Beijerinckia indica ATCC 9039 Negative Rod No 1 2 Aerobe 20 Chemoorganotroph Mesophilic Soil Free living Singles No 395963 NC_010581.1 Bac0002932 Brachybacterium phenoliresistens str. W13A50 "Brachybacterium phenoliresistens strain W13A50 is a Gram-positive, ovoid-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism and non-spore-forming nature. This strain exhibits optimal growth at a temperature of 32.0°C, indicating a preference for moderate thermal conditions. The ability to thrive in both aerobic and anaerobic environments suggests that B. phenoliresistens W13A50 may have adaptable metabolic pathways, allowing it to utilize a variety of substrates under differing oxygen levels. ↵↵Given its phenol resistance, this bacterium may play a significant role in the biodegradation of phenolic compounds, which are prevalent in various industrial effluents and environmental pollutants. The metabolic versatility and resilience of B. phenoliresistens W13A50 could provide insights into bioremediation strategies targeting phenolic contaminants. Furthermore, its Gram-positive morphology may influence its interactions within microbial communities, particularly in environments impacted by organic pollutants." Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium phenoliresistens Gram-positive ovoid non-motile facultative aerobe/anaerobe 32 mesophilic non-spore-forming 396014 JDYK00000000.1 Bac0002933 Pseudomonas sp. AD21 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. AD21 396378 NQYG00000000.1 Bac0002934 Thioalkalivibrio sp. K90mix "Thioalkalivibrio sp. (strain K90mix) is an extremely salt tolerant (haloalkaliphilic), chemolithoautotrophic, sulfur-oxidizing Gram-negative bacterium isolated from a mixture of soda lake sediments. Thioalkalivibrio sp. uses CO2 as a carbon source and reduced sulfur compounds as an energy source. It has a pH optimum of 10 and can grow at salinities up to 4.3M of sodium and 3.6M of potassium. Thioalkalivibrio sp. can be used to remove noxious sulfur compounds from waste streams and energy carriers (bioremediation and carbon sequestration). (Adapted from: http://genome.jgi-psf.org/thi_k/thi_k.home.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio sp. K90mix K90mix Negative Rod Yes 1 2 Aerobic Chemolithoautotroph Mesophilic Specialized Free living Nonsporulating No 396595 NC_013889.1 Bac0002935 Sphingomonas sanxanigenens Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sanxanigenens 397260 QFNN00000000.1 Bac0002936 Lachnospiraceae bacterium A2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium A2 397290 ASSX00000000.1 Bac0002937 Acidovorax citrulli AAC00-1 "Acidovorax avenae subsp. citrulli is an aerobic mesophillic Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria. It is formerly known as Pseudomonas pseudoalcaligenes subsp. citrulli. This organism is the causal agent of bacterial fruit blotch (BFB), which was first detected in Florida in 1989. The disease is spread by infested seeds, infected transplants, or natural spread from wild hosts. Infected transplants represent the most important means of disease transmission because fruit blotch can spread throughout the transplant operation and can be asymptomatic on older plants, which can lead to high numbers of infected young plants early in the planting season. Bacterial fruit blotch disease development is favored by warm wet weather, during which the disease can develop rapidly. Control of this disease is best achieved through preventative measures, but copper-based fungicides can mitigate the damage if applied prior to fruit set. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax citrulli Negative Rod No 1 2 Aerobe Mesophilic Multiple No 397945 NC_008752.1 Bac0002938 Campylobacter jejuni subsp. jejuni CG8486 "Campylobacter jejuni subsp. jejuni CG8486 is a Gram-negative bacterium characterized by its spirilla shape and the ability to exist in both single and chain arrangements. This microbe is a heterotroph, relying on organic compounds for energy, and exhibits microaerophilic growth, thriving in environments with reduced oxygen levels. Optimal growth conditions for C. jejuni CG8486 are not specified, but the organism is known to inhabit diverse ecological niches, suggesting adaptability to various environments.↵↵The microaerophilic nature of C. jejuni CG8486 indicates its preference for environments with lower oxygen concentrations, which may reflect its ecological adaptations to specific habitats, such as animal intestines or other anaerobic or low-oxygen environments where it can efficiently metabolize available nutrients. This adaptability to multiple habitats underscores the bacterium's potential role in various ecological interactions and nutrient cycling within its environments. The unique traits of this strain highlight the importance of understanding microbial diversity and the specific ecological roles that different strains may occupy." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 398000 AASY00000000.1 Bac0002939 Proteiniclasticum ruminis Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Proteiniclasticum Proteiniclasticum ruminis 398199 FOVK00000000.1 Bac0002940 Paraburkholderia phytofirmans PsJN "Paraburkholderia phytofirmans PsJN is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments, with an optimal growth temperature of 30°C. As a nonsporulating organism, it relies on vegetative growth rather than sporulation for survival and propagation. This species is strictly aerobic, indicating that it requires oxygen for its metabolic processes.↵↵The ecological role of Paraburkholderia phytofirmans PsJN may extend to interactions with plant systems, given its terrestrial habitat. Its ability to thrive in aerobic conditions suggests that it could be involved in soil nutrient cycling and potentially in enhancing plant growth through various mechanisms, including nitrogen fixation or promotion of root health. Further research into its specific interactions with plant hosts could provide valuable insights into its contributions to soil health and plant-microbe interactions in terrestrial ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia phytofirmans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Terrestrial Free living Nonsporulating 398527 NC_010679.1 Bac0002941 Burkholderia ambifaria MC40-6 "The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known, as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility.Burkholderia ambifaria is generally found as the dominant Burkholderia cepacia complex species in natural environments where it is often associated with plant roots. Burkholderia ambifaria strain MC40-6 was found to occur in soil associated with maize roots (i.e., maize rhizosphere) at a density of 10,000 to 100,000 cells per g in Michigan, USA in August 2004. Its original niche may have been tall prairie grasses. It is able to directly fix atmospheric nitrogen. It shows no pathogenicity towards onion, a plant on which plant-pathogenic Burkholderia cepacia strains show maceration or chlorosis symptoms (modified from http://genome.jgi-psf.org/finished_microbes/bura6/bura6.home.html). (HAMAP: BURA4)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria MC40-6 Negative Rod Yes 1 2 Facultative aerobe 30 Mesophilic Multiple Free living Homo sapiens Nonsporulating No 398577 NC_010553.1 Bac0002942 Delftia acidovorans SPH-1 "Delftia acidovorans SPH-1 is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, is classified as a heterotroph, and is an obligate aerobe. As a member of the *Delftia* genus, *D. acidovorans SPH-1* is primarily found in soil and aquatic environments, where it plays a significant role in nutrient cycling. This microbe exhibits a robust metabolic versatility, enabling it to utilize a wide range of organic compounds for growth. As a heterotroph, it derives its energy and carbon from organic sources rather than through photosynthesis or inorganic materials. The obligate aerobic nature of *D. acidovorans SPH-1* means that it requires oxygen for respiration, making it more prevalent in oxygen-rich environments such as moistened soils, sediment, and water bodies. This trait assures its competitive advantage in the ecological niches it inhabits. Microscopically, *D. acidovorans SPH-1* appears as straight rods, typically measuring 0.5 to 1.0 micrometers in width and 1.0 to 3.0 micrometers in length. This morphology aids in mobility within various substrates, allowing the bacterium to exploit its environment effectively.A notable feature of *Delftia acidovorans SPH-1* is its capacity to degrade a variety of pollutants, including aromatic compounds, which positions it as a potential agent for bioremediation processes. Furthermore, this organism has shown promise in industrial applications, particularly in the bioconversion of waste materials due to its metabolic versatility. Its ability to thrive in diverse environments makes it a subject of interest for studies in microbial ecology and environmental biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans SPH-1 Negative Rod Yes 1 2 Aerobe 30 Mesophilic Multiple Free living No 398578 NC_010002.1 Bac0002943 Dinoroseobacter shibae DFL 12 = DSM 16493 "Dinoroseobacter shibae DFL 12 (also designated DSM 16493) is a Gram-negative, rod-shaped bacterium that thrives in freshwater environments. This species is characterized by its phototrophic metabolism, utilizing light as an energy source, which distinguishes it from many other freshwater microbes that may rely on different energy sources. D. shibae exhibits optimal growth at a temperature of 33.0 °C, suggesting a preference for moderately warm aquatic habitats.↵↵As an aerobic organism, D. shibae requires oxygen for its metabolic processes, which supports its survival in well-oxygenated freshwater ecosystems. This characteristic may influence its distribution and interactions within its habitat, as it competes for resources with other microbial inhabitants that may possess different metabolic strategies. ↵↵The ecological role of D. shibae may include contributions to the cycling of organic matter and the production of oxygen in freshwater systems, thereby supporting the broader ecosystem functionality. Its phototrophic capabilities indicate a potential involvement in primary productivity, which is crucial for sustaining aquatic food webs. Furthermore, understanding the traits of D. shibae can provide insights into the adaptability and ecological significance of phototrophic bacteria in changing freshwater environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Dinoroseobacter Dinoroseobacter shibae Negative Rod Yes 1 2 Aerobe 33 Phototroph Mesophilic Fresh water Free living 398580 NC_009952.1 Bac0002944 Trichlorobacter lovleyi SZ "Trichlorobacter lovleyi SZ is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a chemolithotroph, utilizing inorganic compounds as its energy source. This microbe thrives optimally at a temperature of 35.0°C and is characterized as an anaerobe, indicating that it requires an oxygen-free environment for growth.↵↵The habitat of T. lovleyi SZ is diverse, suggesting its potential adaptability to various anaerobic environments. Its ability to metabolize inorganic substrates for energy may contribute to biogeochemical cycles, specifically in anaerobic conditions where it may play a role in the degradation of chlorinated compounds. This metabolic versatility could be particularly significant in natural and engineered ecosystems where pollutants are present, highlighting the potential for T. lovleyi SZ in bioremediation strategies. Understanding its specific interactions and roles within its habitats may provide insights into the broader ecological functions of anaerobic microbes in nutrient cycling and pollutant degradation." Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Trichlorobacter Trichlorobacter lovleyi Negative Rod No 1 2 Anaerobe 35 Chemolithotroph Mesophilic Multiple Free living Singles 398767 NC_010814.1 Bac0002945 Rhodococcoides kyotonense Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides kyotonense 398843 FZOW00000000.1 Bac0002946 Tessaracoccus flavescens str. SST-39T Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus flavescens 399497 NZ_CP019608.1 Bac0002947 Shewanella baltica OS195 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. OS195 was isolated in August 1986 from deep water of the Gotland Deep, a 240m deep anoxic basin in the Baltic Sea. It forms part of a large scale collection and study on Shewanella -isolates from the water column of the central Baltic Sea. In this study it was shown that Shewanella baltica had an increased abundance in the low oxic water and at the oxic-anoxic interface. It is fast growing and easy to be cultivated and shows a fast onset of growth even after prolonged periods of starvation. It also shows good growth at low organic carbon concentration. OS195 is a potential candidate to be used for bioremediation of sites contaminated with organic pollutants, heavy metals and for energy production in fuel cells. The genome-sequenced S. baltica strains form part of different clones according to RAPD analysis that fits well with the physiological features, a coincidence that was interpreted as different niches occupied by the different clones. OS195 formed part of the largest clone (clone ""A"") that was present in the Baltic Sea in two subsequent years (only 6 out of 13 clones were present over two years). Clone A is a versatile clone with respect to the use of electron acceptors and electron donors. Besides their potential use for biotechnological applications, the comparative genome analysis is targeted at a better understanding of the biogeochemical potential and the specific ecological niches of the different S. baltica - clones in the low oxic/anoxic water of the central Baltic Sea. (HAMAP: SHEB9)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS195 Negative Rod Yes 1 2 Aerobe; anaerobe Heterotroph Mesophilic Aquatic Free living Pairs - Singles Nonsporulating No 399599 NC_009997.1 Bac0002948 Agrococcus jejuensis "Agrococcus jejuensis is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival. The physiological characteristics of A. jejuensis suggest it may be well adapted to specific environmental niches where temperature and oxygen levels align with its growth preferences.↵↵This microbe was initially isolated from a unique ecological setting, which may contribute to its distinct metabolic capabilities and potential applications in biotechnology. The preference for aerobic conditions indicates that A. jejuensis likely plays a role in environments where oxygen is readily available, possibly contributing to nutrient cycling or other ecological processes. Further research may reveal additional functional traits that enhance our understanding of its ecological role and applications in bioremediation or agricultural practices, particularly in relation to its adaptive strategies in specific habitats." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus jejuensis Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 399736 NZ_LT629695.1 Bac0002949 Enterobacter sp. 638 "Enterobacter sp. 638 was isolated in association with poplar, Populus trichocarpa x deltoids, and represents a commonly found endophytic bacterium associated with this tree. Endophytes are bacteria that live within the tissue of a plant without substantively harming it. They can help promote plant growth in several ways, including helping the host overcome toxic effects of environmental pollution. Some Enterobacteriales can affect nodule formation by legumes, fix nitrogen and produce plant hormones. The family Enterobacteriacae includes free-living, commensal and pathogenic bacteria associated with host species ranging from plants to humans (adapted from http://genome.jgi-psf.org/finished_microbes/ent_6/ent_6.home.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. 638 638 Negative Rod Yes 2 Facultative anaerobe Mesophilic HostAssociated Free living No 399742 NC_009425.1 Bac0002950 Comamonas testosteroni KF-1 "Comamonas testosteroni KF-1 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolic capabilities and is nonsporulating. This species is known to inhabit a variety of environments, indicating its ecological versatility and adaptability. ↵↵As an aerobe, Comamonas testosteroni KF-1 requires oxygen for its growth and energy production, which positions it within ecosystems where aerobic conditions prevail. The absence of sporulation suggests that this strain relies on vegetative growth to withstand environmental challenges rather than forming spores, which may limit its survival capabilities in extreme conditions. ↵↵The presence of Comamonas testosteroni KF-1 in multiple habitats may reflect its ability to utilize various organic compounds, potentially contributing to biogeochemical cycling processes. Moreover, the metabolic pathways employed by this bacterium could play a role in the degradation of specific pollutants, further highlighting its ecological significance in bioremediation contexts. Understanding the traits of Comamonas testosteroni KF-1 enhances our comprehension of its role in microbial communities and its potential applications in environmental microbiology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni Negative Rod No 1 2 Aerobe Mesophilic Multiple Free living Nonsporulating 399795 AAUJ00000000.2 Bac0002951 Streptococcus merionis "Streptococcus merionis is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites such as the skin, respiratory, and gastrointestinal tracts of humans and animals, and is a facultative anaerobe. As a Gram-positive microbe, Streptococcus merionis has a thick peptidoglycan layer in its cell wall, which provides rigidity and maintains its spherical shape. Its mesophilic temperature preference allows it to grow optimally in temperatures between 20-45°C, making it well-suited to inhabit various environments. As a chemoheterotroph, Streptococcus merionis relies on external sources of organic compounds for energy and carbon, which it obtains by breaking down complex molecules into simpler ones. This microbe can colonize multiple body sites, including the skin, respiratory, and gastrointestinal tracts, where it can coexist with other microbes. Its ability to thrive in both aerobic and anaerobic conditions makes it a facultative anaerobe, allowing it to adapt to changing environmental conditions. Streptococcus merionis has been isolated from various hosts, including rodents, and has been implicated in diseases such as abscesses and septicemia. The unique ability of Streptococcus merionis to form biofilms and produce virulence factors makes it a significant concern in healthcare settings, and research into its pathogenesis and treatment is ongoing, with studies focusing on the development of novel therapeutic strategies to combat infections caused by this microbe." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus merionis Gram-positive Cocci No 1 29 Chemoheterotroph mesophilic Nonsporulating 400065 NZ_LT906439.1 Bac0002952 Pontibacter korlensis str. X14-1T Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter korlensis 400092 NZ_CP009621.1 Bac0002953 Microbacterium ginsengisoli "Microbacterium ginsengisoli is a Gram-positive, rod-shaped bacterium that exhibits aerobic to microaerophilic growth characteristics and thrives optimally at a temperature of 29.0°C. This species is part of the diverse Microbacterium genus, which is known for its presence in various environments, including soil and plant-associated habitats.↵↵The Gram-positive nature of M. ginsengisoli suggests a robust cell wall structure, which may contribute to its survival in diverse ecological niches. Its rod shape is typical of many bacteria in this genus and may facilitate motility and colonization in specific environments. The aerobic to microaerophilic oxygen requirement indicates that M. ginsengisoli can adapt to varying oxygen levels, potentially allowing it to inhabit both well-oxygenated and moderately oxygen-restricted environments.↵↵Given its optimal growth temperature of 29.0°C, M. ginsengisoli is likely well-suited for environments that are moderately warm, which may include temperate soils and agricultural settings. This adaptability may enable it to play a role in the decomposition of organic matter or contribute to nutrient cycling in its native habitats. ↵↵Overall, the traits of Microbacterium ginsengisoli suggest that it may serve important ecological functions, particularly in terrestrial ecosystems where it could interact with plant root systems and influence soil health and fertility. Further research could elucidate its specific roles within these ecological interactions." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium ginsengisoli Gram-positive rod non-motile aerobic / microaerophile 29 mesophilic 400772 JYIY00000000.1 Bac0002954 Undibacterium pigrum str. DSM 19792 "Undibacterium pigrum str. DSM 19792 is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, classifying it as an aerobic organism. This strain does not form spores, which is characteristic of its metabolic adaptations and ecological niche. The lack of sporulation may suggest a reliance on stable environmental conditions for survival, as well as a potential sensitivity to extreme stressors that typically trigger sporulation in other bacterial species.↵↵The morphology of Undibacterium pigrum, being rod-shaped, may influence its motility and interaction with its environment, although specific motility traits are not provided. The aerobic nature of this bacterium indicates that it likely occupies niches where oxygen is readily available, such as surface waters or soils with good aeration. ↵↵Given the traits of Undibacterium pigrum, further research could explore its role in biogeochemical cycles, particularly in oxygen-rich environments where it may contribute to nutrient cycling or organic matter degradation. The specific metabolic pathways and ecological interactions of this strain remain to be elucidated, but its aerobic nature positions it as a potentially important player in microbial communities that thrive in well-oxygenated habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium pigrum Gram-negative rod non-motile aerobic non-spore-forming 401470 QJKB00000000.1 Bac0002955 Neoundibacterium parvum Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Neoundibacterium Neoundibacterium parvum 401471 NZ_CP034464.1 Bac0002956 Bifidobacterium dentium Bd1 "Among the members of the large, diverse, and dynamic microbial community residing in the human gastrointestinal tract (GIT), Bifidobacterium is a dominant genus considered beneficial to humans. The GIT of healthy newborns is typically colonized by bifidobacteria, especially in breast-fed infants, during the first few days of life. However among Bifidobacterium is also found Bifdobacterium dentium, an opportunistic cariogenic pathogen. The genetic basis for the ability of B. dentium to survive in the oral cavity and contribute to caries development is not understood. Annotation of the genome sequence revealed multiple ways in which B. dentium has adapted to the oral environment through specialized nutrient acquisition, defense against antimicrobial agents, and gene products that increase fitness and competitiveness within the oral niche. B. dentium Bd1 was shown to metabolize a wide variety of carbohydrates, while colonization and persistence factors implicated in tissue adhesion, acid tolerance, and the metabolism of human saliva-derived compounds were also identified. It has evolved through a very limited number of horizontal gene acquisition events (adapted from PMID 20041198). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium Bd1 Positive Rod No 1 1 Anaerobic Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 401473 NC_013714.1 Bac0002957 Francisella tularensis subsp. novicida U112 "Francisella tularensis subsp. novicida U112 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This subspecies is classified as an aerobe, indicating that it requires oxygen for growth and metabolism. F. tularensis subsp. novicida U112 has been isolated from various habitats, suggesting a versatile ecological niche that may contribute to its adaptability in different environments.↵↵The structure of F. tularensis subsp. novicida U112, characterized by its rod shape and negative Gram reaction, aligns with the general morphological characteristics of the Francisella genus, which is known for its small cell size and unique cellular features. The ability to thrive in multiple habitats may reflect the organism's ecological flexibility, enabling it to persist in diverse settings, potentially including aquatic environments or soil.↵↵Understanding the ecological role of F. tularensis subsp. novicida U112 may provide insights into its interactions within microbial communities and its survival strategies in various ecosystems. This adaptability highlights the importance of further research into its environmental resilience and potential roles in biogeochemical cycles, which could enhance our understanding of microbial dynamics in the ecosystems it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Multiple Free living Singles 401614 NC_008601.1 Bac0002958 Nocardioides daphniae "Nocardioides daphniae is a Gram-positive, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which may influence its survival strategies and ecological interactions. ↵↵The Gram-positive nature of N. daphniae indicates that it possesses a thick peptidoglycan layer in its cell wall, a feature that is commonly associated with increased resistance to certain environmental stresses. Its rod shape may also confer advantages in mobility and nutrient absorption within its ecological niche. ↵↵While the specific ecological role of Nocardioides daphniae remains to be fully elucidated, its aerobic metabolism suggests that it could play a significant role in nutrient cycling within oxygen-rich environments, potentially contributing to the degradation of organic matter. The optimal growth temperature of 29.0°C aligns with conditions often found in various aquatic environments, hinting at its possible association with freshwater ecosystems, where it may interact with other microorganisms and contribute to the overall microbial community dynamics. This positioning within the ecosystem may allow N. daphniae to participate in the breakdown of complex organic substances, thereby facilitating nutrient availability for other organisms." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides daphniae Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 402297 NZ_CP038462.1 Bac0002959 Halobacillus mangrovi str. KTB 131 "Halobacillus mangrovi str. KTB 131 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 32.0°C. This microbe is categorized as aerobic, indicating that it requires oxygen for its metabolic processes. The ability to form spores may confer resilience, allowing the organism to survive in fluctuating environmental conditions, which is characteristic of many species within the Bacillus genus.↵↵Its Gram-positive nature suggests a robust cell wall structure, primarily composed of peptidoglycan, which may contribute to its stability and ability to endure harsh conditions. The optimal growth temperature of 32.0°C aligns with the typical thermal range for mesophilic organisms, suggesting potential adaptation to environments such as mangrove ecosystems where this strain was isolated.↵↵The ecological significance of Halobacillus mangrovi str. KTB 131 may relate to its potential role in nutrient cycling within its habitat. By participating in the degradation of organic matter and contributing to the microbial community dynamics, this bacterium may enhance soil and sediment health in mangrove environments. Furthermore, its spore-forming ability might facilitate its survival and proliferation in nutrient-poor or variable conditions, marking it as a potential candidate for biotechnological applications in bioremediation or soil enhancement." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus mangrovi Gram-positive Rod aerobic 32 mesophilic spore-forming 402384 NZ_CP020772.1 Bac0002960 Kushneria avicenniae "Kushneria avicenniae is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microorganism thrives optimally at a temperature of 32.0°C, suggesting a preference for moderately warm environments. The Gram-negative cell wall structure of K. avicenniae is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may confer specific advantages in its ecological niche.↵↵Given its aerobic nature, K. avicenniae relies on oxygen for its metabolic processes, which may influence its distribution in habitats rich in organic material, such as mangrove ecosystems where it could play a role in nutrient cycling. The non-spore-forming characteristic further indicates that this bacterium may be more susceptible to environmental stresses compared to spore-forming counterparts, necessitating stable conditions for survival and proliferation.↵↵Understanding the traits of Kushneria avicenniae can provide insights into its potential functional roles in microbial communities, particularly in relation to oxygen-rich environments where it may contribute to the degradation of organic matter and the maintenance of microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Kushneria Kushneria avicenniae Gram-negative rod aerobic 32 mesophilic non-spore-forming 402385 FOLY00000000.1 Bac0002961 Methanococcus maripaludis C5 "Methanococcus maripaludis (Latin ""mare"" meaning sea, ""palus"" meaning marsh) is a model species among the methanogenic Archaea. Originally characterized by W. J. Jones, the species was the predominent methanogen isolated from a salt-marsh sediment in South Carolina, United States. Numerous additional isolates were obtained by W. Whitman, including strain S2, also known as strain LL. M. maripaludis is strictly anaerobic, hydrogenotrophic (growing on hydrogen and carbon dioxide) and nitrogen-fixing, and is a mesophilic relative of the hyperthermophilic Methanococcus jannaschii. Cells are irregular cocci with weak motility. M. maripaludis is an excellent laboratory model because of rapid, reliable growth, a complete genome sequence, a robust set of genetic tools, and ongoing studies with expression arrays and proteomics.Methanococcus maripaludis possesses a small, circular genome of 1.66 Mb in length with no extrachromosomal elements. The genome has a low, 33%, GC content. Open reading frame predictions indicate 1719 orfs. The maripaludis genome is relatively simple with few repeated sequences, though it contains three copies of the 16S and 23S ribosomal genes. Interestingly, while the genome of the closely related Methanocaldococcus jannaschii contains a number of inteins, maripaludis appears to lack inteins entirely, even in orfs that are otherwise highly homologous to their M. jannashii counterparts. (From http://faculty.washington.edu/leighj/mm.html) (BacMap)" Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis C5 Cocci No 1 1 Anaerobe 35 Lithotroph Mesophilic Aquatic Free living Singles Nonsporulating No 402880 NC_009135.1 Bac0002962 Virgibacillus sp. SK37 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus sp. SK37 403957 NZ_CP007161.1 Bac0002963 Citrifermentans bemidjiense Bem "Citrifermentans bemidjiense Bem is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobe, thriving optimally at a temperature of 30.0°C. This microbe is characterized as a chemolithotroph, indicating that it derives its energy from inorganic compounds, a trait that suggests its potential role in biogeochemical cycles within its terrestrial habitat.↵↵The anaerobic nature of C. bemidjiense Bem points to its adaptation to environments where oxygen is limited, allowing it to exploit niches that may be inhospitable to other microbial life. Its ability to utilize inorganic substances for energy could facilitate the breakdown of complex organic materials in the soil, thereby contributing to nutrient cycling and soil health.↵↵Furthermore, the unique combination of its rod shape and single-cell arrangement may influence its motility and interaction with the surrounding environment, potentially affecting its ecological role in terrestrial ecosystems. The adaptability of C. bemidjiense Bem to anaerobic conditions and its chemolithotrophic metabolism highlight its significance in the microbial community dynamics of soil environments, where it may play a crucial role in the transformation of nutrients and energy flow within these systems." Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Citrifermentans Citrifermentans bemidjiense Negative Rod No 1 2 Anaerobe 30 Chemolithotroph Mesophilic Terrestrial Free living Singles 404380 NC_011146.1 Bac0002964 Escherichia coli O26 "Escherichia coli O26 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or single arrangements. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli O26 is optimally adapted to growth at a temperature of 37.0°C, which is consistent with the body temperature of many warm-blooded hosts. As a host-associated microbe, E. coli O26 is part of the diverse microbial community found within the gastrointestinal tracts of various animals, including humans.↵↵The ability of E. coli O26 to grow in different oxygen conditions suggests a metabolic versatility that allows it to exploit various niches within its host environment. This adaptability may provide insights into its potential interactions with the host's immune system and overall gut microbiota dynamics. The presence of E. coli O26 in host-associated habitats underscores its relevance in studies related to microbial ecology and host-microbe interactions, particularly in understanding how specific strains may contribute to the health or disease states of their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 404399 RSWY00000000.2 Bac0002965 Pararhodobacter aggregans str. D1-19 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pararhodobacter Pararhodobacter aggregans 404875 QDDR00000000.1 Bac0002966 Anoxybacillus thermarum str. AF/04 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus thermarum 404937 JXTH00000000.1 Bac0002967 Mycobacteroides salmoniphilum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides salmoniphilum 404941 PECH00000000.1 Bac0002968 Xylella fastidiosa M23 "Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa M23 Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles No 405441 NC_010577.1 Bac0002969 Stenotrophomonas humi str. DSM 18929 "Stenotrophomonas humi str. DSM 18929 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is part of the broader Stenotrophomonas genus, which is known for its metabolic versatility and adaptability to various environments. ↵↵As a member of the Xanthomonadaceae family, S. humi str. DSM 18929 is characterized by its robust physiological traits that allow it to survive in diverse ecological niches. The bacterium's aerobic nature suggests that it requires oxygen for its metabolic processes, which may contribute to its role in environments where organic matter decomposition is prevalent. ↵↵Given its optimal temperature of 25.0°C, S. humi str. DSM 18929 may be well-suited for life in temperate soils, where such conditions are commonly found. Its presence in soil ecosystems could imply a role in nutrient cycling or interactions with other microbial communities. Thus, this strain exemplifies the ecological significance of soil-dwelling bacteria in maintaining soil health and fertility, potentially influencing plant growth and ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas humi Gram-negative rod aerobic 25 mesophilic non-spore-forming 405444 LDJI00000000.1 Bac0002970 Bacillus cereus G9842 "Bacillus cereus G9842 is a gram-positive, rod-shaped bacterium categorized as a mesophile, thriving optimally at moderate temperatures, and is a chemoheterotroph, deriving energy from organic compounds. This bacterium typically colonizes various body sites in animals, particularly within the gastrointestinal tract, and is commonly associated with foodborne illness in humans. As a gram-positive organism, Bacillus cereus G9842 possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining process, giving it a characteristic purple hue. Its rod shape (bacillus) is indicative of its alignment with other members of the Bacillus genus, which are renowned for their environmental adaptability. The mesophilic nature of Bacillus cereus G9842 allows it to thrive in a range of temperatures, typically between 20°C and 37°C, making it well-suited to the human body and other warm-blooded hosts. As a chemoheterotroph, Bacillus cereus G9842 relies on organic materials for both carbon and energy, often found in food substances, which contributes to its role in food spoilage and intoxication, particularly in starchy dishes. This bacterium is classified as a facultative anaerobe, meaning it can survive in both aerobic and anaerobic conditions, allowing it to thrive in diverse environments. Bacillus cereus G9842 is also notable for its ability to form spores, which contribute to its resilience in adverse conditions, including heat and desiccation. This sporulation capability enables the microbe to survive in harsh environments and can lead to outbreaks, particularly through improperly stored food. Additionally, certain strains produce potent toxins that can cause gastrointestinal disorders, highlighting the importance of understanding this bacterium in both clinical and food safety contexts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus G9842 Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Homo sapiens Chains Sporulating Yes 405531 NC_011775.1 Bac0002971 Bacillus cereus B4264 "Bacillus cereus B4264 is a Gram-positive, rod-shaped bacterium that thrives in mesophilic temperature ranges, making it a facultative anaerobe and a chemoheterotroph. This microorganism is characterized by its ability to form endospores, which contribute to its resilience and adaptability in a variety of environments. Found in diverse habitats, such as soil, water, and even within the gastrointestinal tracts of various organisms, B. cereus can occupy numerous body sites, highlighting its ecological versatility. As a Gram-positive bacterium, B. cereus retains the crystal violet stain used in the Gram staining process, which is indicative of its thick peptidoglycan layer. Its rod-shaped morphology allows for efficient motility and colonization, particularly in nutrient-rich environments. Being mesophilic, it optimally grows at moderate temperatures, typically between 30°C and 37°C, which aligns with its presence in food products and environments conducive to human activity. As a facultative anaerobe, B. cereus can switch between anaerobic and aerobic respiration, enabling it to thrive in fluctuating oxygen levels. This metabolic flexibility is particularly advantageous when it colonizes food sources, where oxygen availability may vary. As a chemoheterotroph, it derives energy from organic compounds, allowing it to utilize a wide range of nutrients for growth and proliferation. Bacillus cereus B4264 is often associated with foodborne illnesses, causing gastrointestinal issues after consumption of contaminated food, particularly rice and other starchy foods. This strain is notable not only for its pathogenic potential but also for its production of various enzymes, including proteases and phospholipases, which contribute to its ability to break down organic matter. Additionally, some strains are being investigated for biotechnological applications, particularly in agriculture for their potential as biopesticides and biofertilizers. Through its multifaceted capabilities, B. cereus B4264 underscores the complex role of microorganisms in both health and industry." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus B4264 Positive Rod Yes 1 1 Aerobe 37 Mesophilic Multiple Free living Homo sapiens Chains Sporulating Yes 405532 NC_011725.1 Bac0002972 Bacillus cereus AH820 "Bacillus cereus AH820 is a gram-positive, rod-shaped bacterium that thrives optimally at mesophilic temperatures. As a chemoheterotroph, it derives its energy from organic compounds, making it versatile in its nutritional requirements. This species is classified as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen, which enhances its adaptability in various environments. B. cereus AH820 is part of a broader group of Bacillus cereus strains that can be found in diverse habitats, including soil, water, and even in association with plants and animals. This microbe is known for its ability to form endospores, a survival mechanism that allows it to endure extreme environmental conditions, such as high temperatures and desiccation. The endospore formation is a key characteristic that ensures its persistence in substrates where nutrient availability is uncertain.The pathogenic potential of Bacillus cereus AH820 is noteworthy, particularly in foodborne illness contexts. It can produce toxins capable of causing gastrointestinal diseases, including emetic and diarrheal syndromes, often associated with the consumption of contaminated, improperly stored foods, such as rice and pasta.Moreover, Bacillus cereus AH820 has been studied for its biotechnological applications, including its role in biocontrol and biodegradation processes. Its capability to decompose complex organic materials makes it a candidate for environmental bioremediation efforts. Additionally, its production of enzymes has implications in industrial applications, spanning from the food sector to pharmaceuticals, illustrating its dual nature as both a beneficial and a harmful microbe." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus AH820 Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Homo sapiens Chains Sporulating Yes 405535 NC_011771.1 Bac0002973 Actinopolyspora xinjiangensis Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora xinjiangensis 405564 FNJR00000000.1 Bac0002974 Pedobacter terrae "Pedobacter terrae is a Gram-negative, non-spore-forming rod-shaped bacterium that optimally thrives at a temperature of 25.0°C. This microbe belongs to the genus Pedobacter, which is known for its diverse metabolic capabilities and adaptability to various environmental conditions. The rod shape of P. terrae is characteristic of many members within its taxonomic group, which often play significant roles in soil microbiomes and organic matter degradation.↵↵As a non-spore-forming organism, Pedobacter terrae relies on vegetative growth for reproduction and survival in its environment. Its Gram-negative cell wall structure is indicative of a thin peptidoglycan layer surrounded by an outer membrane, which may provide it with resistance to certain antibiotics and environmental stresses.↵↵The optimal growth temperature of 25.0°C suggests that P. terrae is well-adapted to temperate environments, potentially making it an important player in soil ecosystems where moderate temperatures prevail. Although specific ecological roles remain to be fully elucidated, the traits of P. terrae imply that it may contribute to nutrient cycling and organic matter decomposition, processes crucial for maintaining soil health and fertility. The metabolic versatility often observed in Pedobacter species highlights their potential significance in biogeochemical cycles, particularly in the breakdown of complex organic compounds in soil habitats." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter terrae Gram-negative rod non-motile 25 mesophilic non-spore-forming 405671 FNCH00000000.1 Bac0002975 Escherichia coli APEC O1 "Escherichia coli APEC O1 is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, exhibiting optimal growth between 37°C, making it well-suited to the warm-blooded environments in which it often resides. As a chemoheterotroph, it derives its energy and carbon from organic compounds, highlighting its reliance on the metabolic byproducts of other organisms. This strain is primarily associated with the intestinal tracts of humans and animals, particularly in the gut flora, but can also be found in various body sites across different species, including the urogenital tract, respiratory system, and bloodstream, especially in cases of infection. As a facultative anaerobe, E. coli APEC O1 can survive and grow in both the presence and absence of oxygen, allowing it to thrive in diverse ecological niches. This adaptability enables the bacterium to exploit both aerobic and anaerobic conditions, providing it a competitive advantage in various environments. One of the significant aspects of E. coli APEC O1 is its role in avian pathogenicity, where it can cause severe infections in poultry, leading to substantial economic losses in the poultry industry. This strain possesses virulence factors that facilitate colonization and invasion of host tissues, leading to conditions such as septicemia and colibacillosis. Additionally, E. coli APEC O1 has been subject to extensive genetic studies, revealing insights into its pathogenic mechanisms and resistance traits, including its ability to evade the host immune response. As antibiotic resistance becomes a growing concern, understanding this microbe's genetics is crucial for developing effective treatments and prevention strategies in both veterinary and human medicine." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli O1 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 405955 NC_009838.1 Bac0002976 Aquisalimonas asiatica "Aquisalimonas asiatica is a Gram-negative, rod-shaped bacterium that demonstrates facultative aerobe/anaerobe metabolic capabilities, allowing it to thrive in varying oxygen conditions. This organism is non-spore-forming and has an optimal growth temperature of 37.0 °C, which is indicative of its potential adaptation to warm environments often associated with human activity or natural thermal sources.↵↵The Gram-negative nature of A. asiatica suggests the presence of an outer membrane that may contribute to its resilience in diverse habitats. Its rod shape is characteristic of many bacteria that inhabit complex environments, facilitating motility and colonization. The facultative lifestyle enables A. asiatica to exploit different ecological niches by utilizing oxygen when available while also being able to switch to anaerobic metabolism in oxygen-depleted scenarios.↵↵The ability to thrive at 37.0 °C positions A. asiatica within a range of habitats that include those influenced by warm water sources, whether from industrial processes or natural thermal springs. Overall, A. asiatica's traits indicate a versatile organism capable of adapting to fluctuating environmental conditions, which may offer insights into its ecological roles in nutrient cycling and interactions within microbial communities in warm environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Aquisalimonas Aquisalimonas asiatica Gram-negative rod facultative aerobe/anaerobe 37 mesophilic non-spore-forming 406100 FOEG00000000.1 Bac0002977 Burkholderia orbicola MC0-3 "Burkholderia orbicola MC0-3 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic respiration. This organism is characterized by its nonsporulating nature, indicating a reliance on alternative survival strategies under varying environmental conditions. B. orbicola MC0-3 has been isolated from multiple habitats, suggesting its adaptability and potential ecological versatility.↵↵The facultative aerobic metabolism allows B. orbicola MC0-3 to thrive in both oxygen-rich and oxygen-depleted environments, which may contribute to its widespread distribution in diverse ecological niches. The absence of sporulation implies that this bacterium may utilize other mechanisms for survival under unfavorable conditions, such as forming biofilms or entering a viable but non-culturable state.↵↵Understanding the traits of Burkholderia orbicola MC0-3 provides insight into its ecological role and potential applications in bioremediation or agricultural contexts, where its adaptability may be leveraged for beneficial purposes. Further research into its metabolic pathways and interactions with other microorganisms in its habitats could reveal additional ecological functions and applications." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia orbicola Negative Rod No 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 406425 NC_010508.1 Bac0002978 Natrinema sp. J7-2 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema sp. J7-2 406552 NC_018225.1 Bac0002979 Xenorhabdus nematophila ATCC 19061 "Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) is an insect pathogenic, facultatively anaerobic, non-spore forming Gram-negative bacterium isolated from the hemolymph of Galleria mellonella infected with Steinernema carpocapsae. X. nematophila possesses numerous peritrichous flagella mutualistically associated with the nematode S. carpocapsae and is only found inside infected hosts. The symbiotic association is essential for the survival of both nematode and its symbiotic bacteria. Free-living, juvenile S. carpocapsae enter insect larvae through the digestive tract. They penetrate the larvae body cavity and release X. nematophila into the hemolymph (blood). The bacteria multiply rapidly, killing the larvae, and providing suitable nutrient conditions for the growth and reproduction of S. carpocapsae. The nematode matures and reproduces. The new juveniles reassociate with X. nematophila and are released into the soil. This bacterium has great potential as a biological control agent for noxious insects in cryptic environments. It is therefore anticipated that with the tools and research knowledge presently available a bio-pesticide can be developed. (Adapted from PMID: 15909327). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus nematophila ATCC 19061 Negative Rod No 1 2 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating No 406817 NC_014228.1 Bac0002980 Sphingobium sp. MI1205 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. MI1205 407020 NZ_CP005193.1 Bac0002981 Sediminibacillus albus "Sediminibacillus albus is a Gram-positive, aerobic, spore-forming bacterium characterized by its rod-shaped morphology. This microbe thrives at an optimal temperature of 37.0°C, which aligns with the thermal preferences of many mesophilic organisms. The Gram-positive nature of S. albus suggests the presence of a thick peptidoglycan layer in its cell wall, which is a common feature among this group of bacteria.↵↵The ability to form spores is a significant trait of S. albus, allowing it to withstand unfavorable environmental conditions and remain viable in the presence of stressors such as desiccation or nutrient limitation. The aerobic metabolic requirement indicates that S. albus relies on oxygen for its energy production, which may limit its distribution to environments where oxygen is readily available.↵↵Understanding the physiological and morphological characteristics of Sediminibacillus albus can provide insights into its potential roles in various ecosystems, particularly in soil environments where aerobic conditions prevail. Its spore-forming ability may also suggest a resilience that allows it to contribute to nutrient cycling and soil health, underscoring its ecological importance in maintaining microbial diversity and functioning in terrestrial habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Sediminibacillus Sediminibacillus albus Gram-positive rod aerobic 37 mesophilic spore-forming 407036 FNFL00000000.1 Bac0002982 Shewanella baltica OS223 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.Shewanella baltica, isolated from the Baltic Sea, is able to grow at 4 degrees C but not 37, unlike other Shewanella species. Under anaerobic conditions, oxidation of organic matter can be coupled to the reduction of nitrate, Fe(III) and sulfur compounds. Shewanella baltica OS223 was isolated from the Baltic Sea at 120 m. (HAMAP: SHEB2)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS223 Negative Rod Yes 1 2 Aerobe; anaerobe Heterotroph Mesophilic Aquatic Free living Pairs - Singles Nonsporulating No 407976 NC_011664.1 Bac0002983 Streptomyces xiamenensis str. MCCC 1A01550 "Streptomyces xiamenensis str. MCCC 1A01550 is a Gram-positive, spore-forming bacterium that thrives in aerobic conditions, with an optimal growth temperature of 32.0°C. This species belongs to the genus Streptomyces, which is renowned for its complex life cycle and ability to produce a wide array of bioactive compounds, including antibiotics.↵↵As a member of the Actinobacteria phylum, S. xiamenensis exhibits the characteristic filamentous morphology often associated with its genus. Its ability to form spores not only aids in its survival under unfavorable environmental conditions but also plays a crucial role in its reproductive cycle, allowing for dispersal and colonization of new habitats.↵↵The optimal temperature of 32.0°C suggests that S. xiamenensis is well-adapted to moderate environmental conditions, potentially reflecting its ecological niche in soil or decaying organic matter where such temperatures are commonly found. The aerobic requirement indicates that this bacterium likely engages in aerobic respiration, utilizing oxygen to metabolize organic substrates, which may further contribute to its role in nutrient cycling within its ecosystem.↵↵Overall, the traits of Streptomyces xiamenensis str. MCCC 1A01550 underscore its potential significance in biotechnological applications, particularly in the discovery of novel antimicrobial agents and involvement in soil health, where its spore-forming capability may enhance resilience and adaptability." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces xiamenensis Gram-positive non-motile aerobic 32 mesophilic spore-forming 408015 NZ_CP009922.3 Bac0002984 Chitinophaga terrae "Chitinophaga terrae is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and non-spore-forming nature. This microbe is part of the broader Chitinophaga genus, which is known for its role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The aerobic metabolism of Chitinophaga terrae suggests that it requires oxygen for growth and may play a significant role in soil ecosystems, particularly in the breakdown of organic matter.↵↵Given its non-spore-forming trait, Chitinophaga terrae may be less resilient to extreme environmental conditions compared to spore-forming microorganisms. However, its aerobic capabilities position it to thrive in well-aerated environments, where it can contribute to nutrient cycling by facilitating the decomposition of chitinous materials. This function is crucial for maintaining soil health and fertility, as it aids in the recycling of nitrogen and other essential nutrients.↵↵In summary, Chitinophaga terrae exemplifies the complex interactions that bacteria have with their environment, particularly in soil ecosystems, where their metabolic processes can significantly influence organic matter decomposition and nutrient availability. Its role in chitin degradation highlights the importance of this microbe in the ecological balance and sustainability of terrestrial habitats." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga terrae (ex Kim and Jung 2007) Gram-negative rod non-motile aerobic non-spore-forming 408074 FNRL00000000.1 Bac0002985 Leptospira kmetyi Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira kmetyi Yes 1 corn roots 408139 NPDO00000000.1 Bac0002986 Mesorhizobium sp. ORS 3324 str. ORS3324 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. ORS 3324 408180 CCMY00000000.1 Bac0002987 Dyadobacter koreensis "Dyadobacter koreensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25°C. This organism is part of a group of soil-dwelling bacteria, which are recognized for their potential roles in nutrient cycling and soil health. The Gram-negative nature of D. koreensis suggests the presence of a complex outer membrane structure, which may contribute to its adaptability to various environmental conditions. ↵↵The aerobic requirement indicates that D. koreensis relies on oxygen for its metabolic processes, which may influence its distribution in well-aerated soil environments. The optimal growth temperature of 25°C positions it within the mesophilic range, suggesting that it is well-adapted to temperate climates where soil temperatures frequently fall within this range.↵↵In the context of its ecological role, D. koreensis may participate in the degradation of organic matter in soil, thereby contributing to the nutrient dynamics essential for plant growth and microbial diversity. The specific metabolic pathways and interactions with other soil microorganisms, while not detailed here, are likely to play a significant role in its ecological function, making it a potentially valuable component of soil microbiomes. Understanding the characteristics of D. koreensis can provide insights into microbial community structures and their contributions to ecosystem processes." Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter koreensis Gram-negative rod non-motile aerobic 25 mesophilic 408657 FNXY00000000.1 Bac0002988 Arthrobacter oryzae str. TNB02 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter oryzae 409290 RBED00000000.1 Bac0002989 Arthrobacter sp. H-02-3 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. H-02-3 409291 PYUI00000000.1 Bac0002990 Allocoprococcus comes "Allocoprococcus comes is a Gram-positive, anaerobic coccus characterized by its spherical shape. As a member of the microbial community, this organism thrives in environments devoid of oxygen, suggesting a specialized niche where it may play a significant role in various biochemical processes. The anaerobic nature of A. comes indicates its reliance on fermentation or other anaerobic metabolic pathways for energy production, which is common among many Gram-positive cocci.↵↵This microbe's coccoid morphology facilitates its survival and replication in anaerobic environments, potentially allowing it to form clusters or chains, a trait often observed in related bacterial genera. While the specific ecological role of A. comes remains to be fully elucidated, its anaerobic lifestyle indicates it could be involved in the degradation of organic matter, contributing to nutrient cycling within its habitat.↵↵The presence of A. comes in certain niches may also suggest its involvement in symbiotic relationships with other microorganisms, particularly in gut environments where anaerobic conditions prevail. This could further imply its potential role in maintaining microbial diversity and stability in such ecosystems. Future studies focusing on the metabolic pathways and interactions of A. comes with other gut flora could provide deeper insights into its ecological significance and functional contributions within anaerobic communities." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Allocoprococcus Allocoprococcus comes Positive Cocci Anaerobe 410072 QSOV00000000.1 Bac0002991 Methanocorpusculum labreanum Z "Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) is an anaerobic methanogenic archaeon phylogenetically associated with the Euryarchaeota. Methanocorpusculum labreanum was isolated from surface sediment from the LaBrea Tar Pits in Los Angeles, California. (HAMAP: METLZ)" Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum labreanum Z Cocci No 1 1 Anaerobe 37 Lithotroph Mesophilic Aquatic Free living Nonsporulating No 410358 NC_008942.1 Bac0002992 Pyrobaculum calidifontis JCM 11548 "Pyrobaculum calidifontis (strain JCM 11548 / VA1) is a facultative anaerobic, hyperthermophilic archaeon phylogenetically associated with the kingdom Crenarchaeota. This strain was isolated from a water sample at the surface of a hot spring in the Philippines and grows under atmospheric air. Pyrobaculum calidifontis cannot use sulfur compounds for anaerobic growth. Oxygen serves as a final electron acceptor under aerobic culture conditions, whereas oxygen can be replaced by nitrate under anaerobic conditions. Therefore, studies on P. calidifontis should provide valuable information on how hyperthermophiles respond to, deal with, or utilize molecular oxygen. The sequencing of Pyrobaculum calidifontis will greatly assist in future microbiology investigations of the genus because it is able to grow both aerobically and anaerobically on simple organic media to high cell densities. Moreover, Pyrobaculum calidifontis can be plated under aerobic conditions. These characteristics will facilitate genetic, biochemical, and microbiological studies and encourage diverse investigators without requiring extensive experience with extremophiles. The comparative genomics of P. calidifontis and other Pyrobaculum species will be informative because some metabolic characteristics of P. calidifontis (ie growth under atmospheric O2 concentrations) are unique thus far among described members of the genus while other characteristics (ie sulfur toxicity) are shared with other species within the genus. (HAMAP: PYRCJ)" Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum calidifontis JCM 11548 Rod No 1 1 Facultative anaerobe 90 Heterotroph Hyperthermophilic Specialized Free living Nonsporulating No 410359 NC_009073.1 Bac0002993 Blautia obeum ATCC 29174 "Blautia obeum ATCC 29174 is a microorganism that thrives in a mesophilic environment, with a temperature preference category of 20-45°C. Its metabolism is primarily chemoheterotrophic, meaning it obtains energy by breaking down organic compounds in the absence of light. Specifically, it produces energy through fermentation, a process in which organic molecules are converted into ATP without the presence of oxygen. This microbe is also a gram-positive, meaning it will retain the Gram stain, which is a characteristic that helps identify it under a microscope. In terms of shape, Blautia obeum ATCC 29174 is a rod-shaped bacterium, often referred to as a bacillus. It has a presence in various body sites across all species, including the gut, where it plays a crucial role in the breakdown of complex carbohydrates. As an obligate anaerobe, Blautia obeum ATCC 29174 requires a strictly anaerobic environment to survive, meaning it cannot tolerate the presence of oxygen. The lack of oxygen is essential for its metabolism, as it would be unable to produce energy through fermentation in the presence of oxygen. In addition to its unique characteristics, Blautia obeum ATCC 29174 has been extensively studied for its ability to break down complex carbohydrates, including cellulose and starch. This ability makes it an attractive candidate for biotechnological applications, such as the production of biofuels and bioproducts. Furthermore, its presence in the gut microbiome has been linked to various physiological processes, including inflammation and immune system regulation." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 411459 AAVO00000000.2 Bac0002994 Dorea formicigenerans ATCC 27755 "Dorea formicigenerans ATCC 27755 is a microorganism that thrives in environments with moderate temperatures, categorized as mesophilic, with an optimal growth temperature range of 25-40°C. This microbe is a chemoheterotroph, utilizing organic compounds as energy sources and reducing their complexity through cellular respiration. The energy production pathway employed by Dorea formicigenerans is fermentative, where glucose is converted into lactic acid and ATP is generated. The bacterium stains gram-positive, characterized by a thick peptidoglycan layer in its cell wall. Its cellular morphology is ovoid or coccoid in shape, with a diameter ranging from 0.5 to 1.5 μm. Dorea formicigenerans has been isolated from various human body sites, including the oral cavity, respiratory tract, and gastrointestinal tract, as well as from environmental samples. This widespread distribution suggests that the microbe is well adapted to colonize diverse habitats. As an obligate anaerobe, Dorea formicigenerans is unable to grow in the presence of oxygen and requires a low-oxygen or oxygen-free environment for survival. This adaptation is likely an evolutionary response to the microbe's inability to cope with oxidative stress. In addition to its scientific significance, Dorea formicigenerans ATCC 27755 has practical applications in the field of biotechnology. For instance, its ability to produce lactic acid from glucose makes it a potential candidate for industrial-scale fermented food production. Furthermore, the microbe's anaerobic metabolism can be exploited for the development of novel bioremediation strategies, enabling the degradation of recalcitrant pollutants in anaerobic environments." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe 411461 AAXA00000000.2 Bac0002995 Eubacterium ventriosum ATCC 27560 "Eubacterium ventriosum ATCC 27560 is a Gram-positive, rod-shaped bacterium that thrives in a mesophilic temperature range and is classified as a chemoheterotroph. This microbe is typically found in the human gastrointestinal tract, contributing to gut microbiota diversity, and is also present in various anoxic environments, including soil and sediments. Eubacterium ventriosum is an obligate anaerobe, meaning it can only grow in environments devoid of oxygen, a characteristic that greatly influences its ecological niche and metabolic processes. As a Gram-positive organism, Eubacterium ventriosum possesses a thick peptidoglycan layer in its cell wall, which is crucial for its structural integrity and protection against environmental stresses. Its rod-shaped morphology allows for efficient nutrient absorption and contributes to its motility within the viscous environments of the gut. The mesophilic temperature preference suggests that this microbe is well-adapted to the warm conditions of the human body, where it plays a role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut health. Eubacterium ventriosum also exhibits chemoheterotrophy, relying on organic compounds from its environment for energy and carbon sources, which is essential for its growth and metabolic activities. In addition, its status as an obligate anaerobe allows it to flourish in the anoxic conditions of the intestines, where competition with oxygen-loving microbes is minimized. Research indicates that Eubacterium ventriosum may have potential therapeutic uses in the modulation of gut microbiota and in studies related to diet and health, as gut microbiota composition plays a significant role in human health and disease. Its presence in the human microbiome highlights the delicate balance of microbial communities that are essential for metabolic processes and overall well-being." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ventriosum Positive Anaerobe 411463 AAVL00000000.2 Bac0002996 Anaerobutyricum hallii DSM 3353 "Anaerobutyricum hallii DSM 3353 is a Gram-positive, obligate anaerobic bacterium characterized by its nonsporulating nature and chemoheterotrophic metabolism. This microbe thrives optimally at a temperature of 37.0°C, suggesting a potential association with warm-blooded hosts or environments that maintain similar thermal conditions. ↵↵As a chemoheterotroph, Anaerobutyricum hallii utilizes organic compounds for energy and carbon, indicating its role in the fermentation processes typical of anaerobic environments. The species is found in multiple habitats, which may include diverse anaerobic niches within the gastrointestinal tracts of animals or other organic-rich environments conducive to anaerobic metabolism.↵↵The nonsporulating trait of Anaerobutyricum hallii suggests it may rely on other survival strategies in adverse conditions rather than forming spores, which can be a critical factor in its ecological niche. Given its obligate anaerobic nature, this bacterium likely contributes to the breakdown of complex organic materials in environments devoid of oxygen, thereby playing a significant role in nutrient cycling and energy flow within its habitats.↵↵Overall, the presence of Anaerobutyricum hallii in various anaerobic environments underscores its potential importance in microbial communities, particularly in processes such as fermentation and organic matter decomposition, where it may interact synergistically with other anaerobic microorganisms." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Anaerobutyricum hallii Positive No 1 Obligate anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 411469 ACEP00000000.1 Bac0002997 Mediterraneibacter gnavus ATCC 29149 "Mediterraneibacter gnavus ATCC 29149 is a Gram-positive, nonsporulating coccus that thrives as a chemoheterotrophic anaerobe, with an optimal growth temperature of 37.0°C. This microbe is part of the intestinal microflora of animals, suggesting it plays a role in the complex ecosystem of the gut microbiome. ↵↵As a member of the anaerobic community, M. gnavus likely contributes to the fermentation processes within the intestinal environment, aiding in the breakdown of complex carbohydrates and influencing nutrient availability for both the host and other microbial inhabitants. The presence of this organism in animal intestines may also have implications for gut health and microbial interactions, although its specific functions and contributions remain to be fully elucidated. ↵↵Overall, M. gnavus exemplifies the diversity of microbial life that resides within the intestinal tract, highlighting the intricate relationships between host and microbiota that are essential for maintaining gut homeostasis." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 411470 AAYG00000000.2 Bac0002998 Ruminococcus callidus ATCC 27760 "Ruminococcus callidus ATCC 27760 is a Gram-positive, coccobacillus-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites of numerous species, including the gastrointestinal tracts of humans, animals, and insects. As an obligate anaerobe, this microbe requires a strict anaerobic environment to survive and grow, making it well-suited to the low-oxygen conditions found in the rumen and gut. The Gram-positive characteristic of R. callidus indicates that it has a thick peptidoglycan layer in its cell wall, which provides structural support and maintains the cell's shape. Its coccobacillus shape allows it to colonize and adhere to surfaces, facilitating its role in the breakdown and fermentation of complex organic matter. As a chemoheterotroph, R. callidus relies on the consumption of organic compounds for energy and growth, utilizing a range of substrates including cellulose, xylan, and other polysaccharides. This ability to degrade and ferment complex carbohydrates makes it a key player in the digestive processes of herbivores and omnivores. The mesophilic temperature preference of R. callidus allows it to thrive in temperatures between 20-45°C, making it well-suited to the warm and stable environments found in the gastrointestinal tracts of animals. Ruminococcus callidus has been found to produce a range of volatile fatty acids, including acetate, propionate, and butyrate, which are essential for the health and well-being of its host. Its ability to degrade lignocellulose and other recalcitrant compounds has also led to its investigation for use in biotechnological applications, such as the production of biofuels and other value-added products." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus callidus Positive Cocci Anaerobe 411473 AWVF00000000.1 Bac0002999 Coprococcus eutactus ATCC 27759 "Coprococcus eutactus ATCC 27759 is a gram-positive, spherical-shaped bacterium that thrives optimally at mesophilic temperatures. This microbe is classified as a chemoheterotroph, relying on organic matter for energy and carbon. It is an obligate anaerobe, meaning it strictly requires anaerobic conditions for growth, which limits its habitat to environments devoid of oxygen, such as the human gastrointestinal tract and various other animal intestines. As a gram-positive organism, Coprococcus eutactus features a thick peptidoglycan cell wall, which contributes to its rigidity and provides a defensive barrier against certain environmental stresses. Its cocci shape allows this microbe to exist in clusters or chains, enhancing its metabolic interactions with neighboring gut flora. The mesophilic temperature preference (typically around 30°C to 37°C) aligns well with its natural habitat within the body, where it plays a role in digestion and the maintenance of gut health. In terms of its ecological niche, Coprococcus eutactus is frequently found in the intestines of various mammals, including humans, where it aids in the fermentation of dietary fibers, producing short-chain fatty acids beneficial for colonic health. Its chemoheterotrophic metabolism allows it to break down complex carbohydrates, contributing to the overall fermentation process in the gut. Notably, Coprococcus eutactus has been investigated for its potential health benefits, including its role in modulating the gut microbiome and supporting immune function. Additionally, some studies suggest it may have implications for metabolic health, hinting at a broader therapeutic role in conditions such as obesity and inflammatory bowel diseases. Its unique contributions to gut ecology underscore the importance of maintaining a diverse microbiota for overall health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus eutactus Positive Cocci Anaerobe 411474 ABEY00000000.2 Bac0003000 Bacteroides ovatus ATCC 8483 "Bacteroides ovatus ATCC 8483 is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature preference category, classified as a chemoheterotroph. This microbe primarily inhabits the human gastrointestinal tract, particularly in the colon, where it plays a significant role in the digestion of complex carbohydrates and the production of short-chain fatty acids essential for maintaining gut health.As a Gram-negative organism, Bacteroides ovatus possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which contributes to its resistance against certain antibiotics and influences its interactions within the host's microbiota. Its rod shape allows for efficient mobility and colonization within the gut lumen, facilitating its ability to compete for resources with other microbial species. Being a chemoheterotroph, Bacteroides ovatus relies on organic compounds for both energy and carbon, deriving nutrients from the breakdown of dietary fibers that human enzymes cannot digest. This ability not only highlights its ecological niche but also underscores its symbiotic relationship with humans, aiding in food breakdown and nutrient absorption. As an obligate anaerobe, Bacteroides ovatus flourishes in environments devoid of oxygen, which is characteristic of the anaerobic conditions present in the intestines. Its metabolic processes thrive in this low-oxygen environment, where it helps to stabilize gut microbiota diversity and function. Bacteroides ovatus is recognized for its potential role in health and disease, contributing to the understanding of the gut microbiome. Recent studies suggest that variations in the abundance and activity of this microbe may influence various conditions, including obesity and inflammatory bowel disease, reflecting its significant impact on human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe 411476 AAXF00000000.2 Bac0003001 Parabacteroides merdae ATCC 43184 "Parabacteroides merdae ATCC 43184 is a gram-negative, rod-shaped bacterium that thrives in anaerobic environments, making it an obligate anaerobe. This microbe typically prefers mesophilic temperature conditions, favoring growth in temperatures around 30-37 degrees Celsius. As a chemoheterotroph, P. merdae derives its energy from organic compounds, breaking them down for both carbon and energy sources. P. merdae is most commonly found in the gastrointestinal tract of humans, where it plays a significant role in the gut microbiome. The bacterium can also be located in various other body sites, including the oral cavity and the female genital tract, contributing to the overall microbial diversity in these environments. The presence of P. merdae in the gut is associated with complex interactions with other gut microbes, contributing to digestive health and potentially influencing host metabolism. One of the fascinating aspects of P. merdae is its capacity to participate in the degradation of complex carbohydrates and other organic compounds, helping in the fermentation process within the gut. This bacterium has also been the subject of research concerning its potential roles in human health and disease, including its relationship with conditions such as obesity and inflammatory bowel disease. Moreover, due to its genetic adaptability, Parabacteroides species, including P. merdae, are gaining interest for their potential use in probiotics and as therapeutic agents in microbiome-centered treatments. Its resilience in anaerobic conditions and ability to metabolize diverse substrates highlight its significant role in maintaining a balanced gut ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 411477 AAXE00000000.2 Bac0003002 Bacteroides uniformis ATCC 8492 "Bacteroides uniformis ATCC 8492 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, specifically categorized as an obligate anaerobe. This microbe prefers a mesophilic temperature range, typically around 37°C, which coincides with the human body temperature, making it well-suited for colonization within the human gastrointestinal tract. Bacteroides uniformis is recognized as a heterotroph, relying on organic compounds for its nutrition, which it derives from the complex polysaccharides present in dietary fibers. Bacteroides uniformis is predominantly found in the gut microbiota of humans and other mammals, where it plays a crucial role in the digestion of dietary fibers. The bacterium contributes to the fermentation process, breaking down complex carbohydrates into short-chain fatty acids, which are beneficial for host metabolism and health. These fatty acids not only provide energy for intestinal epithelial cells but also have anti-inflammatory and immune-regulating properties. One of the remarkable aspects of Bacteroides uniformis is its ability to adapt to various dietary habits and environmental changes within the gut. This adaptability is partly due to its extensive repertoire of enzymes that can degrade a wide variety of polysaccharides. Furthermore, Bacteroides uniformis has been investigated for its potential role in health, particularly in relation to obesity and metabolic diseases, as alterations in gut microbiota composition, including the presence and abundance of Bacteroides species, have been linked to metabolic health in humans. Research continues to explore its therapeutic applications, particularly in probiotics and gut health, showcasing its significance in both microbiology and human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe 411479 AAYH00000000.2 Bac0003003 Clostridium sp. SS2/1 "Clostridium sp. SS2/1 is a gram-positive, rod-shaped bacterium belonging to the genus Clostridium. This microbe is classified as a mesophile, thriving optimally at moderate temperatures typically found in natural environments. Clostridium sp. SS2/1 is a heterotroph, deriving its energy from organic compounds, and is strictly an obligate anaerobe, existing in environments devoid of oxygen.The gram-positive nature of Clostridium sp. SS2/1 indicates a thick peptidoglycan layer, which contributes to its structural integrity and resilience in anaerobic conditions. Its rod shape allows for efficient movement and interaction in various substrates, while the mesophilic temperature preference suggests that it can flourish in environments such as soils, sediments, and the gastrointestinal tracts of animals, where conditions are suitable for growth.As a heterotrophic organism, Clostridium sp. SS2/1 relies on complex organic substances for nutrition, which allows it to thrive in diverse ecological niches, particularly in decomposing organic matter. Being an obligate anaerobe, it is incapable of surviving in the presence of oxygen, making it well-adapted to anaerobic habitats such as deep soil layers and decaying organic materials, where it plays a crucial role in nutrient cycling. Notably, Clostridium species are renowned for their ability to produce spores, which are resistant to extreme conditions, allowing them to endure harsh environments until favorable growth conditions return. This spore-forming capability is a significant factor in their ecology, contributing to their persistence in various habitats. Clostridium sp. SS2/1 has garnered interest in biotechnology due to its potential applications in fermentation processes and bioproduction of biofuels, showcasing its versatility beyond its natural ecological contributions." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. SS2/1 Positive Anaerobe 411484 ABGC00000000.3 Bac0003004 Clostridium sp. M62/1 "Clostridium sp. M62/1 is a gram-positive, rod-shaped bacterium classified as an obligate anaerobe, thriving in low-oxygen environments. This microbe prefers mesophilic conditions, typically thriving between 25°C and 37°C. As a chemoheterotroph, it derives energy by metabolizing organic compounds, making it dependent on external sources of carbon and energy. Clostridium species, including M62/1, are commonly found within the human gut flora, as well as in soil and various anaerobic environments such as wetlands and the intestines of animals. The gram-positive nature of Clostridium sp. M62/1 is characterized by a thick peptidoglycan layer in its cell wall, which retains the crystal violet dye used in gram staining, allowing for easy identification in laboratory settings. The rod shape facilitates motility through flagella, giving it the ability to colonize diverse environments. Being an obligate anaerobe means that Clostridium sp. M62/1 cannot survive in the presence of oxygen, relying instead on fermentation processes to produce energy. The anaerobic nature of this microbe has implications for its ecological role and potential industrial applications. For instance, Clostridium species are known for their ability to produce solvents and biofuels through fermentation processes, making them valuable in biotechnology. Furthermore, some strains of Clostridium are used in bioremediation to degrade pollutants in anaerobic environments. The metabolic versatility of Clostridium sp. M62/1 highlights its ecological significance, particularly in nutrient cycling and the breakdown of complex organic substances in anaerobic habitats. Researchers continue to explore its potential uses in the production of biofuels and other bioproducts." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. M62/1 Uncharacterized Anaerobe 411486 ACFX00000000.2 Bac0003005 Anaerostipes caccae L1-92 "Anaerostipes caccae L1-92 is a Gram-positive anaerobic bacterium that is notable for its capacity to thrive in environments devoid of oxygen. As an anaerobe, A. caccae L1-92 plays a significant role in anaerobic fermentation processes, contributing to the breakdown of organic matter in various ecosystems. This species is typically found in the gastrointestinal tracts of mammals, where it participates in the complex microbial community involved in digestion and nutrient cycling.↵↵The Gram-positive nature of A. caccae L1-92 indicates the presence of a thick peptidoglycan layer in its cell wall, which may confer resilience against environmental stresses encountered in the anaerobic niches it inhabits. The ability of this bacterium to metabolize substrates in low-oxygen conditions suggests a specialized adaptation that underpins its ecological success in environments where oxygen levels are limited.↵↵Furthermore, A. caccae L1-92 may contribute to the fermentation of dietary fibers and other carbohydrates, producing short-chain fatty acids that are beneficial for host health and can influence gut microbiome dynamics. The metabolic activities of A. caccae L1-92 could potentially enhance nutrient availability for host organisms, underscoring the intricate interplay between microbial communities and their hosts in maintaining gut homeostasis. As such, A. caccae L1-92 serves as an important representative of anaerobic microbial life, with implications for understanding digestive health and microbial ecology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes caccae Positive Anaerobe 411490 ABAX00000000.3 Bac0003006 Enterocloster bolteae ATCC BAA-613 "Enterocloster bolteae ATCC BAA-613 is a Gram-positive, rod-shaped bacterium that exhibits anaerobic metabolism and functions as a chemoheterotroph. This organism does not undergo sporulation, which differentiates it from some other members of the Clostridia family that are known for their spore-forming capabilities. Enterocloster bolteae is versatile in its habitat, being capable of thriving in multiple environments, although specific ecological niches have not been detailed.↵↵The anaerobic nature of Enterocloster bolteae suggests a reliance on environments devoid of oxygen, where it likely contributes to the breakdown of organic matter. Its classification as a chemoheterotroph indicates that it obtains energy through the consumption of organic compounds, which may include a variety of substrates present in its habitat. This metabolic versatility may allow Enterocloster bolteae to play a significant role in nutrient cycling and organic matter decomposition in anaerobic ecosystems, such as those found in the gastrointestinal tracts of animals or in anoxic sediments.↵↵Given its unique traits, Enterocloster bolteae may be involved in complex microbial interactions within its environment, contributing to the overall microbial community dynamics and influencing the biochemical processes that sustain these anaerobic habitats. Further studies into its ecological roles could provide insights into its contributions to ecosystem functions and microbial health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster bolteae Positive Rod No 1 Anaerobe Chemoheterotroph Multiple Nonsporulating 411902 ABCC00000000.2 Bac0003007 Sporomusa ovata Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporomusa Sporomusa ovata anaerobic 411922 CTRP00000000.1 Bac0003008 Martinezella miluonensis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella miluonensis 411945 FMAH00000000.1 Bac0003009 Virgibacillus chiguensis "Virgibacillus chiguensis is a Gram-positive, aerobic bacterium characterized by its rod-shaped morphology and spore-forming capabilities. This species thrives optimally at a temperature of 37.0°C, suggesting a preference for mesophilic conditions, which are typical of many environments inhabited by bacteria. The ability to form spores is a notable trait, allowing V. chiguensis to survive in adverse conditions, although the specific triggers for sporulation in this species are not detailed.↵↵As a member of the Virgibacillus genus, V. chiguensis may share ecological niches with other bacilli, potentially contributing to nutrient cycling in its environment. Its aerobic lifestyle indicates a reliance on oxygen for metabolic processes, which may influence its distribution in terrestrial or aquatic ecosystems that provide sufficient oxygen levels. Further investigations into its ecological role could reveal insights into its interactions with other microorganisms and its contributions to biogeochemical processes. Understanding the characteristics of V. chiguensis may provide valuable information for biotechnological applications, particularly in areas where aerobic, spore-forming bacteria are utilized for their robust survival strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus chiguensis Gram-positive rod aerobic 37 mesophilic spore-forming 411959 FQXD00000000.1 Bac0003010 Burkholderia mallei NCTC 10229 "Burkholderia mallei is the etiologic agent of glanders, a disease that is often fatal. Its natural reservoir are horses and other equines, but it can be occasionally transmitted to humans either by inhalation or through breaks in the skin. It is an obligate animal pathogen, with an intracellular localization. B. mallei is highly infectious as an aerosol and was used as a biological weapon in the American Civil War and in both World Wars. Unlike the related bacterium B.pseudomallei it is non-motile. One of its virulence factors has been identified as the type III secretion system, another as the newly characterized type VI (T6S). Strain NCTC 10229 will be used for comparative genomics. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mallei NCTC 10229 Negative Rod No 1 2 Aerobe Mesophilic HostAssociated Free living Homo sapiens Yes 412022 NC_008836.1 Bac0003011 Celerinatantimonas diazotrophica str. DSM 18577 "Celerinatantimonas diazotrophica str. DSM 18577 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities, allowing it to thrive in varying oxygen conditions. This organism has an optimal growth temperature of 32.0 °C, suggesting a preference for moderately warm environments. ↵↵As a member of the microbial community, C. diazotrophica may play a significant role in nitrogen cycling due to its diazotrophic capabilities. Diazotrophs are known for their ability to fix atmospheric nitrogen, converting it into forms that can be utilized by other organisms in the ecosystem. This ability not only contributes to soil fertility but also supports plant growth in various environments.↵↵The structural characteristics, such as its rod shape and Gram-negative cell wall composition, may influence its interactions with other microorganisms and its resilience in diverse habitats. Furthermore, its facultative lifestyle enables C. diazotrophica to adapt to fluctuating conditions, potentially allowing it to occupy ecological niches where oxygen levels vary, thereby playing a crucial role in maintaining microbial diversity and ecosystem stability. Understanding the ecological implications of C. diazotrophica could provide insights into its potential applications in sustainable agriculture and environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Celerinatantimonadaceae Celerinatantimonas Celerinatantimonas diazotrophica Gram-negative rod facultative aerobe/anaerobe 32 mesophilic 412034 SMGD00000000.1 Bac0003012 Priestia aryabhattai str. AB211 "Priestia aryabhattai strain AB211 is a Gram-positive bacterium characterized by its aerobic metabolism and specific habitat preferences, primarily found in granite residual soil, associated with plant roots, and within the soil matrix. The Gram-positive nature of this microbe suggests the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environmental conditions.↵↵This strain's aerobic requirement indicates its dependence on oxygen for growth and energy production, positioning it as a participant in soil ecosystems where oxygen availability is sufficient. The association with plant roots suggests that Priestia aryabhattai may play a role in plant-microbe interactions, potentially influencing nutrient cycling or soil health through its metabolic activities. ↵↵In the context of its habitat, the presence of this bacterium in granite residual soils could imply an adaptation to nutrient-poor conditions, where it may contribute to the breakdown of organic matter or the mineralization of nutrients, thereby supporting plant growth and overall soil fertility. Understanding the functional roles of Priestia aryabhattai strain AB211 in these ecosystems may provide insights into the ecological dynamics of soil microbiomes and their contributions to plant health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia aryabhattai positive aerobic granite residual soil; plant roots; soil 412384 MCAN00000000.1 Bac0003013 Borrelia recurrentis A1 "Relapsing fever (RF) is a disease caused by several spirochetes of the genus Borrelia. Relapsing fever borrelioses are characterized by recurrent febrile episodes and spirochetemia. There are 2 forms; louse-borne relapsing fever (also known as urban or epidemic RF) is caused by Borrelia recurrentis, and is transmitted by the body louse Pediculus humanus humanus. It currently known in Ethiopia. Endemic tick-borne relapsing fever (TBRF) is a zoonotic disease transmitted worldwide by softbody ticks of the genus Ornithodoros. It is caused by at least 15 distinct Borrelia species throughout the world.Borrelia recurrentis strain A1 was isolated from an adult with RF in Ethiopia. RF causes fewer relapses that TBRF but has a higher spontaneous mortality rate despite antibiotics. Previous work suggested that B.recurrentis was very closely related to B.duttonii; the current sequencing project suggests that in fact B.recurrentis should be considered a strain of B.duttonii that is undergoing considerable gene decay. Decay is probably due at least in part to mutated recA and mutS genes in A1. All 6 plasmids in strain A1 have a counterpart in B.duttonii strain Ly (BORDL). (HAMAP: BORRA)" Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia recurrentis A1 Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 412418 NC_011260.1 Bac0003014 Borrelia duttonii Ly "Relapsing fever (RF) is a disease caused by several spirochetes of the genus Borrelia. Relapsing fever borrelioses are characterized by recurrent febrile episodes and spirochetemia. There are 2 forms; louse-borne relapsing fever (also known as urban or epidemic RF) is caused by Borrelia recurrentis, and is transmitted by the body louse Pediculus humanus humanus. It currently known in Ethiopia. Endemic tick-borne relapsing fever (TBRF) is a zoonotic disease transmitted worldwide by softbody ticks of the genus Ornithodoros. It is caused by at least 15 distinct Borrelia species throughout the world.Borrelia duttonii is endemic in Western Africa, where it causes TBRF, causing up to 6 relapses, no mortality but often adverse perinatal outcomes. Strain Ly was isolated from a 2-year-old girl with TBRF in Tanzania, and has 16 plasmids. Interestingly B.recurrentis strain A1 (BORRA), a causative agent of louse-borne relapsing fever RF, and sequenced by the same group at the same time, has been deduced to be a reduced form of B.duttonii undergoing genome decay. (HAMAP: BORDL)" Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia duttonii Ly Negative Spirilla No 1 2 Aerobe Psychrophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 412419 NC_011254.1 Bac0003015 Microterricola viridarii str. ERGS5:02 "Microterricola viridarii str. ERGS5:02 is a Gram-positive, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This organism exhibits typical characteristics of the Microterricola genus, suggesting its adaptability to various environmental conditions. The Gram-positive nature of M. viridarii str. ERGS5:02 indicates a thicker peptidoglycan layer in its cell wall, which is a distinguishing feature that may contribute to its stability and resilience in its natural habitat.↵↵The aerobic requirement of this strain points to its reliance on oxygen for metabolic processes, suggesting that it may play a role in the decomposition of organic matter within its ecosystem. The optimal temperature of 25.0°C aligns with many soil-dwelling microorganisms, indicating that M. viridarii str. ERGS5:02 is likely adapted to temperate environments, where it may contribute to nutrient cycling and soil health.↵↵Overall, M. viridarii str. ERGS5:02 exemplifies the diversity of microbial life and underscores the significance of aerobic Gram-positive bacteria in ecological processes, particularly in soil ecosystems. Its ability to thrive at moderate temperatures may offer insights into its resilience in fluctuating environmental conditions, which is crucial for maintaining ecosystem balance." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microterricola Microterricola viridarii Gram-positive rod aerobic 25 mesophilic 412690 NZ_CP014145.1 Bac0003016 Bacillus thuringiensis str. Al Hakam "Bacillus thuringiensis str. Al Hakam is a gram-positive, rod-shaped bacterium that is classified as a mesophile, thriving optimally at moderate temperatures, and is a heterotroph that utilizes organic compounds for growth. This bacterium is widely known for its ability to produce insecticidal crystal proteins, specifically delta-endotoxins, which effectively target the larvae of various lepidopteran pests.The gram-positive characteristic of B. thuringiensis indicates a thick peptidoglycan layer in its cell wall, providing structural integrity and resistance to certain environmental stresses. Its rod-shaped morphology allows for increased surface area and efficient nutrient absorption. As a mesophile, B. thuringiensis str. Al Hakam flourishes best in warm environments, typically between 20°C and 37°C, making it suitable for diverse ecological niches. As a heterotroph, this microbe absorbs organic matter from its surroundings, often found in soil and plant-related environments where it can break down complex organic substances. Being a facultative anaerobe, B. thuringiensis str. Al Hakam has the adaptability to thrive in both aerobic and anaerobic conditions. This flexibility enables it to colonize various habitats, including agricultural soils and decomposing organic matter. Beyond its role in agriculture as a biopesticide, B. thuringiensis str. Al Hakam has garnered attention for its implications in biological control methods, reducing the reliance on chemical pesticides and promoting sustainable farming practices. Furthermore, the potency of its crystal proteins has led to their incorporation in genetically modified organisms (GMOs), allowing crops to express these proteins and provide built-in pest resistance. This innovative application showcases the potential of B. thuringiensis not only in agricultural enhancement but also in environmental conservation by minimizing pesticide run-off into ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Al Hakam Positive Rod Yes 1 1 Facultative aerobe Mesophilic Multiple Free living Homo sapiens Sporulating No 412694 NC_008600.1 Bac0003017 Cronobacter malonaticus str. 45402 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter malonaticus homes 413503 NC_023025.1 Bac0003018 Pedobacter insulae "Pedobacter insulae is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0°C. As a non-spore-forming microbe, it exhibits a consistent morphological structure that is characteristic of its genus. The Gram-negative nature of Pedobacter insulae suggests a complex outer membrane structure, which may contribute to its adaptability in various environments.↵↵This species is part of the broader Pedobacter genus, which is known for its role in organic matter degradation and potential involvement in nutrient cycling. The aerobic metabolic pathways employed by Pedobacter insulae allow it to utilize oxygen for energy production, making it a significant player in oxygen-rich environments, such as soil or aquatic systems.↵↵Studying Pedobacter insulae could provide insights into the microbial processes that facilitate the breakdown of organic materials, thereby influencing ecosystem dynamics. Its specific temperature preference may also suggest a role in biogeochemical processes in temperate regions during moderate climatic conditions. Understanding the ecological niches occupied by such bacteria could enhance our comprehension of microbial diversity and function in natural habitats." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter insulae Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 414048 FOPP00000000.1 Bac0003019 Methylorubrum salsuginis "Methylorubrum salsuginis is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C and exhibits aerobic metabolic requirements. This microbe is part of a group of methylotrophic bacteria, which are known for their ability to utilize single-carbon compounds, such as methanol, as their primary carbon and energy sources. ↵↵The Gram-negative nature of M. salsuginis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interactions with the environment and other microorganisms. Its rod-shaped morphology is characteristic of many bacteria within its ecological niche, facilitating motility and possibly contributing to its adaptability in various environments. ↵↵Methylorubrum salsuginis's preference for aerobic conditions suggests that it occupies habitats where oxygen is readily available, potentially allowing it to participate in the cycling of carbon and other nutrients in its ecosystem. This characteristic positions M. salsuginis as a key player in the degradation of organic compounds in environments such as coastal saline habitats, where it is believed to contribute to the biogeochemical processes associated with methylotrophy. The ability of this bacterium to utilize methanol and other single-carbon compounds may also indicate its potential role in mitigating greenhouse gas emissions, particularly in environments impacted by anthropogenic activities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum salsuginis Gram-negative rod aerobic 29 mesophilic 414703 FOSV00000000.1 Bac0003020 Paenibacillus donghaensis str. KCTC 13049 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus donghaensis 414771 NZ_CP021780.1 Bac0003021 Planococcus donghaensis str. DSM 22276 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus donghaensis 414778 NZ_CP016543.2 Bac0003022 Actinopolyspora erythraea str. YIM90600 Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora erythraea 414996 JPMV00000000.1 Bac0003023 Proteiniborus ethanoligenes "Proteiniborus ethanoligenes is a Gram-positive, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbial species is characterized by its non-spore-forming nature, which distinguishes it from many other bacteria that utilize sporulation as a survival strategy in adverse environments.↵↵The anaerobic requirement of Proteiniborus ethanoligenes suggests a metabolic adaptation that may involve fermentation pathways, enabling it to utilize substrates in environments devoid of oxygen. This trait might facilitate its role in specific ecological niches, such as those found in the gastrointestinal tracts of certain animals or in anaerobic sediments, where it could contribute to organic matter decomposition or the cycling of nutrients.↵↵Understanding the metabolic capabilities of Proteiniborus ethanoligenes could provide insights into its potential applications in biotechnological processes, particularly in the production of biofuels or biogas, given its ability to metabolize ethanol. This bacterium exemplifies the diverse adaptations of microorganisms to thrive in anaerobic conditions, highlighting the importance of such organisms in both ecological and applied microbiological contexts." Bacillati Bacillota Clostridia Eubacteriales Clostridiales_Incertae_Sedis Proteiniborus Proteiniborus ethanoligenes Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 415015 FNQE00000000.1 Bac0003024 Pseudoxanthomonas spadix str. DSM 18855 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas spadix 415229 RDQN00000000.1 Bac0003025 Hyperthermus butylicus DSM 5456 "Hyperthermus butylicus (strain DSM 5456 / JCM 9403) is an extreme hyperthermophilic, anaerobic, sulfur-reducing archeon phylogenetically associated with the kingdom Crenarchaeota. This organism was isolated from the sea floor of a solfataric (volcanic area that gives off gas) environment with temperatures up to 112 degrees Celsius at a depth of 9 meter, off the shore of Sao Miguel Island, Azores. Hyperthermus butylicus grows optimally at 95-106 degrees Celsius, with a NaCl concentration of 17 g/l and a pH of 7.0. It utilizes peptide mixtures as carbon and energy sources but not amino acid mixtures, various synthetic peptides or undigested protein. It can also generate energy by reduction of elemental sulfur to yield hydrogen sulfide. Fermentation products include carbon dioxide, 1-butanol, acetic acid, phenylacetic acid and a trace of hydroxyphenyl acetic acid, which are produced in the presence or absence of sulfur and hydrogen. Its genome consists of a single circular chromosome of 1,667,163 bp with a 53.7% G+C content. A total of 1672 genes were annotated, of which 1602 are protein-coding, and up to a third are specific to H. butylicus. A large percentage of the predicted start codons are GUG (25%) or UUG (37%). Many of the predicted metabolic gene products are associated with the fermentation of peptide mixtures including several peptidases with diverse specificities, and there are many encoded transporters. Most of the sulfur-reducing enzymes, hydrogenases and electron-transfer proteins were identified which are associated with energy production by reducing sulfur to hydrogen sulfide. Two large clusters of regularly interspaced repeats (CRISPRs) are present, one of which is associated with a crenarchaeal-type cas gene superoperon; none of the spacer sequences yielded good sequence matches with known archaeal chromosomal elements. Two cdc6 genes are present, but neither could be linked unambiguously to an origin of replication. The genome carries no detectable transposable or integrated elements, no inteins, and introns are exclusive to tRNA genes. This suggests that the genome structure is quite stable, possibly reflecting a constant, and relatively uncompetitive, natural environment. (HAMAP: HYPBU)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Pyrodictiaceae Hyperthermus Hyperthermus butylicus DSM 5456 Cocci No 1 1 Anaerobic 95 Hyperthermophilic Aquatic Free living Singles - Pairs Nonsporulating No 415426 NC_008818.1 Bac0003026 Thiohalomonas denitrificans "Thiohalomonas denitrificans is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments. This microbe is characterized by its ability to perform denitrification, a crucial biochemical process that reduces nitrate to nitrogen gas, thereby playing a significant role in the nitrogen cycle. The anaerobic nature of T. denitrificans suggests a specialization for environments devoid of oxygen, where it contributes to the reduction of nitrogen compounds, potentially influencing local nutrient dynamics.↵↵The rod shape of T. denitrificans allows for efficient motility and nutrient acquisition in its natural habitat, which may include marine sediments or other anoxic environments. Its metabolic capabilities enable it to utilize various electron donors, thereby enhancing its adaptability to fluctuating environmental conditions.↵↵The ecological role of Thiohalomonas denitrificans extends beyond nitrogen cycling; it may also interact with other microbial communities, influencing community structure and function. Understanding its specific metabolic pathways and interactions can provide insights into biogeochemical processes in anaerobic ecosystems. Furthermore, the study of T. denitrificans could reveal important information regarding microbial adaptations to extreme environments, shedding light on the resilience and versatility of life in low-oxygen habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiohalomonadales Thiohalomonadaceae Thiohalomonas Thiohalomonas denitrificans Gram-negative rod non-motile anaerobic 415747 FMWD00000000.1 Bac0003027 Chryseobacterium flavum str. KCTC 12877 "Chryseobacterium flavum strain KCTC 12877 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This organism thrives optimally at a temperature of 32.0 °C, suggesting it is well-adapted to moderate environmental conditions. ↵↵As a member of the Chryseobacterium genus, C. flavum is likely to possess unique enzymatic capabilities that may allow it to degrade complex organic materials, although specific metabolic pathways have not been detailed in the available data. The aerobic nature of this bacterium indicates its reliance on oxygen for growth, which may influence its ecological niche, potentially positioning it in environments such as soil or aquatic systems where oxygen is readily available.↵↵Given its traits, C. flavum str. KCTC 12877 may play a significant role in the biogeochemical cycling of nutrients, particularly in the decomposition of organic matter. Its ability to thrive at moderate temperatures could also indicate a potential for adaptation to diverse habitats, making it a candidate for studies on microbial diversity in various ecological settings. Further research could elucidate its functional role in microbial communities and its interactions with other organisms in its environment." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium flavum Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 415851 QNUE00000000.1 Bac0003028 Rhodanobacter thiooxydans str. FW104-T7 "Rhodanobacter thiooxydans str. FW104-T7 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth rather than sporulation for survival and reproduction. ↵↵The aerobic requirement of R. thiooxydans indicates its metabolic pathways are likely adapted to utilize oxygen efficiently, which may play a role in its ecological niche. Given its optimal temperature, it may be well-suited for environments that maintain moderate thermal conditions, potentially influencing its distribution in habitats such as soil or aquatic systems.↵↵An intriguing aspect of R. thiooxydans str. FW104-T7 is its potential involvement in biogeochemical cycles, particularly in the oxidation of sulfur compounds, as suggested by its genus name. This capability could position it as a significant player in sulfur cycling within its ecosystem, contributing to the maintenance of ecological balance by transforming sulfur species and thereby influencing nutrient availability. Understanding the specific roles of such microbes can enhance our knowledge of microbial interactions in the environment and their contributions to ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter thiooxydans Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 416169 LVJS00000000.1 Bac0003029 Actinobacillus pleuropneumoniae serovar 5b str. L20 "Actinobacillus pleuropneumoniae serovar 5b str. L20 is a Gram-negative, rod-shaped bacterium that thrives in temperatures ranging from 30°C to 37°C, making it mesophilic. As a chemoheterotroph, it derives energy and carbon from organic compounds, primarily found in the respiratory tract of swine, which serve as its natural hosts. This microbe is classified as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen, a significant trait that facilitates its survival in varying environmental conditions within the host. Actinobacillus pleuropneumoniae is specifically associated with the respiratory system of pigs, where it primarily colonizes the lungs and upper respiratory tract. It is the causative agent of porcine pleuropneumonia, characterized by severe respiratory distress and substantial economic losses in the swine industry. The bacterium exhibits virulence factors, such as toxins and surface proteins, which assist in evading the host's immune response, resulting in pneumonia and other systemic infections. In terms of its genetic makeup, A. pleuropneumoniae serovar 5b str. L20 has been the subject of genomic studies, which have provided insights into its pathogenicity and potential avenues for vaccine development. Notably, the ability of this microbe to adapt to the host environment and establish infections underscores its significance in veterinary microbiology. Ongoing research on this bacterium continues to focus on its interactions with the host’s immune system, as well as the development of effective management strategies to counteract its impact on swine health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae L20 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Sus Scrofa Chains - Pairs - Singles No 416269 NC_009053.1 Bac0003030 Burkholderia sp. KJ006 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. KJ006 416344 NC_017921.1 Bac0003031 Halorubrum lacusprofundi ATCC 49239 "Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) is a psychrophile isolated from Deep Lake, a hypersaline lake in Antarctica. H. lacusprofundi can grow between 0 and 42 degrees Celsius with optimal growth at 31 degrees Celsius. H. lacusprofundi differs from the already sequenced Halobacterium sp. NRC-1 in that it can grow on a variety of carbon sources including glucose, mannose, acetate, and ethanol, while NRC-1 has a more limited metabolic capacity and has not been shown to use sugars. The other sequenced halophile, Haloarcula marismortui, on the other hand has been shown to use a variety of sugars. H. lacusprofundi, as a psychrophile, provides a contrast to both sequenced halophiles, and comparison of the three will highlight adaptations to low temperature. These results can be compared with those of psychrophilic methanogens to determine whether they use similar mechanisms for cold adaptation. (HAMAP: HALLT)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum lacusprofundi ATCC 49239 Rod Yes 1 1 Aerobe Mesophilic Aquatic Free living No 416348 NC_012029.1 Bac0003032 Pseudothermotoga lettingae TMO "Pseudothermotoga lettingae TMO is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells. This organism thrives optimally at a temperature of 65.0 °C, indicating its adaptation to high-temperature environments. As a heterotrophic anaerobe, Pseudothermotoga lettingae TMO relies on organic compounds for energy, which reflects its specialization in environments that lack oxygen.↵↵The specific habitat of Pseudothermotoga lettingae TMO is characterized as specialized, suggesting that it occupies unique ecological niches where conditions may differ significantly from more common environments. The ability to thrive in anaerobic conditions allows this microbe to contribute to biogeochemical cycles, particularly in environments such as deep-sea hydrothermal vents or hot springs, where organic matter is present but oxygen levels are minimal.↵↵This bacterium's traits highlight its potential role in the decomposition of complex organic materials in extreme habitats, thereby influencing the microbial dynamics within such ecosystems. Understanding the ecological functions of Pseudothermotoga lettingae TMO can provide insights into the adaptations of extremophiles and their contributions to nutrient cycling in high-temperature, low-oxygen environments." Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga lettingae Negative Rod No 1 2 Anaerobe 65 Heterotroph Hyperthermophilic Specialized Free living Singles 416591 NC_009828.1 Bac0003033 Paraburkholderia lycopersici Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia lycopersici 416944 FMYQ00000000.1 Bac0003034 Mycetohabitans endofungorum str. HKI456 "Mycetohabitans endofungorum strain HKI456 is a Gram-negative, ovoid-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 32.0°C. This microbe is noteworthy for its distinctive morphological and physiological characteristics, which contribute to its potential roles in various ecological niches. ↵↵The Gram-negative cell wall structure of M. endofungorum suggests a characteristic permeability barrier that could influence its interactions within microbial communities. The ovoid shape may confer advantages in its motility or colonization capabilities, although specific mechanisms remain to be elucidated. Its preference for aerobic conditions highlights its dependence on oxygen for metabolic processes, which may reflect its adaptations to environments rich in organic matter where it can access necessary resources.↵↵The optimal growth temperature of 32.0°C indicates that M. endofungorum is likely well-suited to moderate thermal environments, potentially influencing its distribution and interactions with other microorganisms in similar habitats. This trait might also suggest a role in the decomposition of organic materials in temperate ecosystems, where such temperatures are prevalent.↵↵Understanding the precise ecological roles and interactions of Mycetohabitans endofungorum strain HKI456 could provide insights into its contributions to biogeochemical cycles, particularly in the context of organic matter breakdown and nutrient cycling in its native environments. Further research may reveal its potential utility in biotechnology or environmental applications." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Mycetohabitans Mycetohabitans endofungorum Gram-negative ovoid aerobic 32 mesophilic 417203 PRDW00000000.1 Bac0003035 Streptomyces indicus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces indicus 417292 FNFF00000000.1 Bac0003036 Paenisporosarcina antarctica str. CGMCC 1.6503 "Paenisporosarcina antarctica strain CGMCC 1.6503 is a Gram-positive, rod-shaped bacterium known for its ability to form spores, which aids in its survival in diverse environmental conditions. This organism thrives optimally at a temperature of 16.0°C, indicating a preference for cooler habitats, which is consistent with its designation as a member of the Antarctic microbial community. Furthermore, P. antarctica is classified as a facultative aerobe/anaerobe, allowing it to adapt to varying oxygen levels, which enhances its ecological versatility.↵↵The capacity for sporulation suggests that P. antarctica can withstand extreme environmental stresses, such as nutrient limitation or desiccation, by entering a dormant state. This trait is particularly advantageous in fluctuating ecosystems, where conditions can change rapidly, thereby enabling the organism to persist until favorable conditions return. Additionally, its facultative anaerobic metabolism implies that it can occupy a range of niches, potentially utilizing available organic carbon sources in both oxygen-rich and oxygen-poor environments.↵↵The ecological insights surrounding Paenisporosarcina antarctica str. CGMCC 1.6503 highlight its potential role in nutrient cycling within cold habitats, where it may contribute to the degradation of organic matter and the recycling of nutrients in the Antarctic ecosystem. Its unique adaptations to cold and variable conditions underscore its importance in understanding microbial life in extreme environments." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Paenisporosarcina Paenisporosarcina antarctica Gram-positive rod non-motile facultative aerobe/anaerobe 16 psychrotolerant spore-forming 417367 NZ_CP038015.1 Bac0003037 Saccharopolyspora shandongensis "Saccharopolyspora shandongensis is a Gram-positive, aerobic bacterium known for its ability to form spores. This microbe belongs to the genus Saccharopolyspora, which is characterized by its filamentous structure and production of secondary metabolites. As a spore-forming organism, S. shandongensis can withstand adverse environmental conditions, enabling it to survive in various habitats.↵↵The aerobic nature of S. shandongensis suggests that it requires oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. This trait is typically associated with bacteria that play significant roles in the degradation of organic matter, potentially contributing to nutrient cycling in their environments.↵↵Given its sporulation ability and aerobic requirements, S. shandongensis may occupy ecological niches where oxygen availability fluctuates, allowing it to thrive in both stable and dynamic environments. This adaptability highlights the ecological significance of S. shandongensis in soil and other oxygen-rich habitats, where it may contribute to the breakdown of complex organic compounds and support the overall health of microbial communities. Further research could elucidate the specific roles it plays within these ecosystems and its interactions with other microbial species." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora shandongensis Gram-positive non-motile aerobic spore-forming 418495 FNOK00000000.1 Bac0003038 Bradyrhizobium sp. UFLA03-84 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. UFLA03-84 Pasture soil 418599 NSJY00000000.1 Bac0003039 Azoarcus olearius "Azoarcus olearius is a Gram-negative, rod-shaped bacterium characterized by its diazotrophic capabilities, allowing it to utilize atmospheric nitrogen as a source of energy. This microbe is typically found in host-associated environments, indicating a potential symbiotic relationship with its hosts. Azoarcus olearius exhibits microaerophilic growth, thriving in conditions with low oxygen levels, which may influence its distribution and interactions within its ecological niche.↵↵The diazotrophic ability of Azoarcus olearius positions it as a crucial player in nitrogen cycling, particularly in environments where nitrogen availability is limited. Its association with host organisms suggests that it may contribute to the nutrient dynamics within those systems, potentially enhancing the host's access to nitrogen. This trait aligns with broader ecological roles of diazotrophs, which are vital for sustaining plant growth in various ecosystems.↵↵Furthermore, the microaerophilic nature of Azoarcus olearius implies that it may be adapted to environments such as root zones of plants or other substrates where oxygen levels fluctuate. This adaptation not only enables it to thrive in specific niches but also highlights the intricate relationships between microorganisms and their environments, revealing how such traits can influence ecosystem functions and nutrient availability." Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Azoarcus Azoarcus olearius Negative Rod Yes 1 2 Microaerophilic Diazotroph Mesophilic HostAssociated Free living 418699 NC_008702.1 Bac0003040 Alloscardovia omnicolens Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Alloscardovia Alloscardovia omnicolens 419015 PKGU00000000.1 Bac0003041 Yersinia massiliensis str. GTA Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia massiliensis 419257 NZ_CP028487.1 Bac0003042 Brucella pseudogrignonensis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella pseudogrignonensis 419475 NNRM00000000.1 Bac0003043 Sulfolobus islandicus Y.N.15.51 "Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone 2), also called Yellowstone 2, is an aerobic thermo-acidophilic archaeum commonly identified in hot, acidic sulfur springs and isolated from a hot spring at Yellowstone National Park. S. islandicus can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. Like other Sulfolobus spp., S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. (Adaptated from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=18651 and PMID:19435847). (HAMAP: SULIN)" Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus Y.N.15.51 Cocci No 1 1 Facultative aerobe 75 Heterotroph Hyperthermophilic Specialized Free living Singles Nonsporulating No 419942 NC_012623.1 Bac0003044 Geobacillus thermodenitrificans NG80-2 "Geobacillus thermodenitrificans (strain NG80-2) is a facultative aerobic thermophilic bacterium phylogenetically associated with the Firmicutes. It was isolated from oilfield in Dagang (Northern China) at a depth of 2000 m and a temperature of 73 degrees Celsius. The complete genome sequence consists of a 3,550,319-bp chromosome and a 57,693-bp plasmid. The genome reveals that NG80-2 is well equipped for adaptation into a wide variety of environmental niches (not only in geothermal areas, but also in temperate regions and permanently cold habitats), by possessing genes for utilization of a broad range of energy sources, genes encoding various transporters for efficient nutrient uptake and detoxification, and genes for a flexible respiration system. The proteome further reveals the presence of a long-chain alkane degradation pathway; and the function of the key enzyme in the pathway, the long-chain alkane monooxygenase LadA, is confirmed by in vivo and in vitro experiments. This strain can use crude oil as a sole carbon source and can degrade 16 to 36 carbon alkanes. It grows between 45 degrees Celsius and 73 degrees Celsius (optimum 65 degrees Celsius), and is capable of oxygen and nitrate respiration. The thermophilic soluble monomeric LadA is an ideal candidate for treatment of environmental oil pollutions and biosynthesis of complex molecules. Geobacillus thermodenitrificans NG80-2 also produces an emulsifier, which may be useful for high temperature biodegradation or other industrial purposes. (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus thermodenitrificans NG80-2 Positive Rod Yes 1 1 Facultative aerobe 65 Chemoorganotroph Thermophilic Specialized Free living Sporulating No 420246 NC_009329.1 Bac0003045 Methanobrevibacter smithii ATCC 35061 "Methanobrevibacter smithii ATCC 35061 is a thermophilic, methanogenic, strict anaerobic bacterium that thrives in environments with temperatures above 45°C. It is a chemoheterotroph, utilizing organic compounds as its energy source and reducing carbon dioxide to produce methane as its primary product. This process is facilitated by its ability to produce hydrogen gas, which is then used to reduce carbon dioxide, producing methane as a byproduct. This unique metabolism allows M. smithii to play a crucial role in the decomposition of organic matter in environments such as landfills, digestive systems, and aquatic ecosystems. M. smithii is a Gram-negative, rod-shaped bacterium, typically measuring 0.5-1.5 μm in width and 2-5 μm in length. Its rod-shaped morphology allows it to efficiently colonize and interact with its environment. As a strict anaerobe, M. smithii is unable to survive in the presence of oxygen, which it degrades through the reduction of oxygen to water. Due to its ability to thrive in a wide range of environments, M. smithii can be found in various body sites across all possible species, including the human gut, where it plays a crucial role in the breakdown of dietary fiber and production of short-chain fatty acids. M. smithii is a thermophilic microbe, capable of growing optimally between 45-55°C, making it a key player in high-temperature environments. Its ability to thrive in these conditions is likely due to the presence of thermostable enzymes that enable it to maintain its cellular functions at elevated temperatures. M. smithii is a fascinating microbe that has evolved to thrive in a wide range of environments. Its unique metabolism and ability to produce methane make it a crucial component of many ecosystems, and its presence has important implications for our understanding of microbial ecology and biogeochemical cycles. Additionally, the study of M. smithii has led to the development of new biotechnological applications, such as the production of biofuels and bioproducts." Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii Positive Rod No 1 Anaerobe 37 Lithotroph Mesophilic Multiple Free living Pairs - Chains No 420247 NC_009515.1 Bac0003046 Epilithonimonas hominis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas hominis 420404 FNWX00000000.1 Bac0003047 Jannaschia donghaensis "Jannaschia donghaensis is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, exhibiting optimal growth at a temperature of 25.0°C. This microbe belongs to a genus characterized by its adaptation to marine settings, suggesting a potential ecological role in coastal or oceanic ecosystems. The Gram-negative nature of J. donghaensis indicates the presence of an outer membrane, which may contribute to its survival and interactions within its habitat, particularly in terms of nutrient uptake and resistance to certain environmental stressors.↵↵The optimal growth temperature of 25.0°C aligns with typical conditions found in temperate marine environments, indicating that J. donghaensis may be well-suited to moderate ocean temperatures. Its aerobic requirement suggests that this bacterium plays a role in the cycling of organic matter and nutrients, possibly participating in processes such as decomposition or biogeochemical cycling in its native habitat.↵↵Overall, the traits of Jannaschia donghaensis highlight its potential ecological significance in marine microbiomes, where it may contribute to the diversity and functionality of microbial communities, particularly in aerobic conditions where organic substrates are abundant. The understanding of its physiological characteristics and environmental preferences could further elucidate its role in marine ecosystems and the broader implications for nutrient cycling in oceanic environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Jannaschia Jannaschia donghaensis Gram-negative rod non-motile aerobic 25 mesophilic 420998 CXSU00000000.1 Bac0003048 Arthrobacter sp. D4 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. D4 421054 LUKC00000000.1 Bac0003049 Microbacterium sp. H6 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. H6 421122 QOAY00000000.1 Bac0003050 Chryseobacterium luteum str. DSM 18605 "Chryseobacterium luteum str. DSM 18605 is a Gram-negative, non-spore-forming bacterium characterized by its rod-shaped morphology and an optimal growth temperature of 16.0°C. This organism is obligately aerobic, necessitating oxygen for its metabolic processes. ↵↵As a member of the genus Chryseobacterium, C. luteum str. DSM 18605 exhibits notable traits that align with the genus's known characteristics, including the ability to thrive in various environments. While specific ecological roles are not detailed in the provided data, the optimal growth temperature suggests that this strain may be well-suited for cold environments, such as those found in marine or freshwater habitats where temperatures are typically lower. ↵↵The physiological adaptations of C. luteum str. DSM 18605 to aerobic conditions may indicate its involvement in the decomposition of organic matter or nutrient cycling in such ecosystems. Further studies could elucidate its interactions with other microorganisms and its contributions to environmental processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium luteum Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 421531 JPRO00000000.1 Bac0003051 Peribacillus butanolivorans str. PHB-7a Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus butanolivorans 421767 NZ_CP030926.1 Bac0003052 Peribacillus butanolivorans str. DSM 18926 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus butanolivorans 421767 LGYA00000000.1 Bac0003053 Mesorhizobium sp. WSM3876 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. WSM3876 422277 NSGA00000000.1 Bac0003054 Mucilaginibacter gracilis str. DSM 18602 "Mucilaginibacter gracilis str. DSM 18602 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits optimal growth at a temperature of 16.0°C. This psychrotolerant microbe is characterized by its adaptability to cooler environments, which may influence its ecological niches and interactions. ↵↵As a member of the genus Mucilaginibacter, this strain is likely involved in the decomposition of organic matter, contributing to nutrient cycling in its habitat. The rod-like morphology may facilitate motility and colonization of surfaces, potentially enhancing its ability to thrive in various ecological contexts. ↵↵Its non-spore-forming nature suggests a reliance on stable environmental conditions for survival, which may limit its distribution to environments where such conditions are present. Further investigations into the metabolic pathways and ecological roles of M. gracilis str. DSM 18602 could provide new insights into the functional dynamics of microbial communities in cooler ecosystems." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter gracilis Gram-negative rod non-motile 16 psychrotolerant non-spore-forming 423350 RBKU00000000.1 Bac0003055 Salmonella enterica subsp. enterica serovar Newport str. SL254 "Salmonella enterica subsp. enterica serovar Newport str. SL254 is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, classified as a facultative anaerobe and a chemoheterotroph. This versatile microbe primarily resides in the intestines of warm-blooded animals, including humans, where it can cause gastrointestinal infections, but it can also be found in various environmental reservoirs such as soil, water, and contaminated food sources. As a gram-negative organism, Salmonella enterica possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which contributes to its pathogenicity and ability to evade the host's immune response. The rod shape of the bacterium facilitates motility, allowing it to navigate through the viscous environment of the intestinal tract. Being mesophilic, it grows optimally at temperatures between 30°C and 37°C, aligning with the internal body temperature of its host.As a facultative anaerobe, SL254 can thrive in both aerobic and anaerobic environments, adapting its metabolic processes based on oxygen availability. Its classification as a chemoheterotroph indicates that it relies on organic compounds for carbon and energy, primarily deriving from the host’s nutrients during infections. This adaptability is critical for its survival in diverse environments and hosts. This particular strain of Salmonella enterica has garnered attention due to its antimicrobial resistance, particularly to commonly used antibiotics, posing challenges in clinical settings. Its ability to develop resistance mechanisms, such as efflux pumps and modified target sites, reflects a growing public health concern. Furthermore, serovar Newport has been implicated in several foodborne outbreaks, particularly associated with animal products such as poultry and beef, underscoring the importance of food safety measures in preventing transmission." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica SL254 Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Pairs - Singles Nonsporulating Yes 423368 NC_011080.1 Bac0003056 Crocosphaera watsonii WH 0003 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Crocosphaera Crocosphaera watsonii 423471 AESD00000000.1 Bac0003057 Agrobacterium pusense Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium pusense 424182 NC_022536.1 Bac0003058 Burkholderia pseudomallei 305 "Burkholderia pseudomallei 305 is a Gram-negative, rod-shaped bacterium primarily found in terrestrial environments and is classified as an aerobic organism. This strain is part of the Burkholderia genus, which is characterized by its diverse ecological adaptations and metabolic versatility. The aerobic nature of B. pseudomallei 305 suggests that it thrives in oxygen-rich environments, which may influence its ecological interactions and survival strategies in soil and other terrestrial habitats.↵↵The bacterium's rod shape is a common morphological trait among many environmental bacteria, enabling it to efficiently navigate its surroundings and potentially utilize various nutrient sources. The terrestrial habitat of B. pseudomallei 305 implies a role in soil ecosystems, where it may participate in nutrient cycling and interact with other microbial communities.↵↵This strain exemplifies the adaptability of Burkholderia species to a range of environmental conditions, reflecting the broader ecological significance of this genus in soil microbiomes. The presence of B. pseudomallei 305 in terrestrial habitats may contribute to the complex interactions among soil microbes and their roles in ecosystem functioning, particularly in nutrient availability and organic matter decomposition. Understanding such ecological dynamics is essential for elucidating the contributions of Burkholderia species to soil health and their potential impacts on agricultural and natural ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 425067 AAYX00000000.1 Bac0003059 Pedobacter duraquae str. DSM 19034 "Pedobacter duraquae strain DSM 19034 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe is characterized by its unique morphology and growth conditions, which suggest an adaptation to specific environmental niches. As a member of the Pedobacter genus, P. duraquae may play a role in various ecological processes, although detailed ecological interactions remain to be elucidated.↵↵The Gram-negative cell wall structure of P. duraquae is indicative of its potential resilience to certain environmental stresses, which could be advantageous in its natural habitats. The absence of sporulation suggests that this organism relies on other survival mechanisms, potentially including metabolic versatility or rapid reproductive strategies under favorable conditions. ↵↵Understanding the physiological traits of P. duraquae may contribute to a broader comprehension of microbial diversity in its habitat. Its optimal growth temperature aligns with mesophilic organisms, which are commonly found in various environments, including soil and aquatic systems. This suggests that P. duraquae may occupy ecological niches where moderate temperatures prevail, possibly impacting nutrient cycling or organic matter decomposition.↵↵Overall, the traits of Pedobacter duraquae strain DSM 19034 highlight its potential ecological significance, particularly in environments where temperature stability and nutrient availability are crucial for microbial communities. Further research could uncover its functional roles within these ecosystems." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter duraquae Gram-negative rod 25 mesophilic non-spore-forming 425511 SNWM00000000.1 Bac0003060 Sulfolobus islandicus L.D.8.5 "Sulfolobus islandicus (strain L.D.8.5 / Lassen 2) is an aerobic thermo-acidophilic archaeum commonly identified in hot, acidic sulfur springs and isolated from Lassen National Park in California. S. islandicus can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. Like other Sulfolobus spp., S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=18805). (HAMAP: SULID)" Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus L.D.8.5 Cocci No 1 1 Facultative aerobe 75 Heterotroph Hyperthermophilic Specialized Free living Singles Nonsporulating No 425944 NC_013769.1 Bac0003061 Thiomonas arsenitoxydans str. 3As Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Thiomonas Thiomonas arsenitoxydans 426114 NC_014144.1 Bac0003062 Methylobacterium sp. 4-46 Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) is a methylotrophic non-halophilic bacterium. It nodulates and fixes nitrogen in symbiosis with legumes. Methylobacterium represents a branch of the Rhizobia which grow facultatively on methanol. (EBI Integr8) Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. 4-46 4-46 Negative Rod Yes 1 2 Facultative Methylotroph Mesophilic Multiple Free living Pairs - Singles Nonsporulating No 426117 NC_010373.1 Bac0003063 Sulfolobus islandicus M.16.4 "Sulfolobus islandicus (strain M.16.4 / Kamchatka 3) is a thermo-acidophilic archaeon commonly identified in hot, acidic sulfur springs and isolated from a hot spring on the Kamchatka Penninsula, in the Russian Far East. S. islandicus can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. Like other Sulfolobus spp., S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. (Adaptated from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=18807). (HAMAP: SULIK)" Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus M.16.4 Cocci No 1 1 Aerobe 75 Lithotroph Hyperthermophilic Specialized Free living Singles Nonsporulating No 426118 NC_012726.1 Bac0003064 Staphylococcus aureus subsp. aureus str. Newman "Staphylococcus aureus subsp. aureus str. Newman is a gram-positive, cocci-shaped bacterium that thrives in the mesophilic temperature range (20–45°C) and is classified as a chemoheterotroph. This organism is commonly found at various body sites, including the skin, anterior nares, throat, and mucous membranes of humans. Additionally, it can inhabit various tissues and organs, making it a versatile commensal and opportunistic pathogen. As a gram-positive bacterium, S. aureus retains the crystal violet stain used in the Gram staining technique, leading to its distinctive violet-blue appearance under a microscope. Its cocci shape, typically observed in clusters resembling bunches of grapes, is characteristic of staphylococci. This morphology is critical for its identification in clinical and laboratory settings. The mesophilic temperature preference of S. aureus allows it to thrive in the human body, where it can exploit the warm, nutrient-rich environment. As a chemoheterotroph, it derives its energy by metabolizing organic compounds, primarily sourced from its host, which contributes to its role as both a commensal organism and a pathogen. It can survive in both aerobic and anaerobic conditions, though it is classified as a facultative anaerobe, allowing it to grow in a variety of oxygen conditions. Staphylococcus aureus subsp. aureus str. Newman is notably recognized for its role in various infections, such as skin and soft tissue infections, septicemia, and pneumonia. This strain has been extensively studied due to its resistance to multiple antibiotics, notably methicillin-resistant strains (MRSA), highlighting its clinical significance. The ability of S. aureus to form biofilms contributes to its persistence on medical devices and its resistance to host immune responses, underscoring the importance of ongoing research in understanding its pathogenic mechanisms and developing effective treatments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Newman Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles Nonsporulating 426430 NC_009641.1 Bac0003065 Alkalibacterium thalassium "Alkalibacterium thalassium is a Gram-positive, rod-shaped bacterium that exhibits a non-spore-forming morphology and thrives optimally at a temperature of 37.0°C. This microbe's Gram-positive nature suggests a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria. The rod shape may facilitate its motility and nutrient uptake in various environments, although specific motility traits have not been documented.↵↵The optimal growth temperature of 37.0°C indicates a preference for mesophilic conditions, which may suggest that Alkalibacterium thalassium is adapted to environments that are temperate and potentially rich in organic matter, although the specific ecological niches it occupies remain to be elucidated. ↵↵Given its non-spore-forming trait, Alkalibacterium thalassium may rely on other mechanisms for survival in fluctuating environmental conditions, such as forming biofilms or utilizing metabolic pathways that allow it to thrive in nutrient-limited settings. Understanding the ecological role of Alkalibacterium thalassium could provide insights into its interactions with other microbial communities, particularly in environments where temperature and nutrient availability vary. This adaptability may be crucial for its survival in various habitats, emphasizing the need for further research into its environmental and biological significance." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alkalibacterium Alkalibacterium thalassium Gram-positive rod non-motile 37 mesophilic non-spore-forming 426701 FNFK00000000.1 Bac0003066 Alkalibacterium putridalgicola "Alkalibacterium putridalgicola is a Gram-positive, rod-shaped bacterium that exhibits a preference for an optimal growth temperature of 37.0 °C. This organism is characterized by its non-spore-forming nature, which distinguishes it from many other bacterial taxa that utilize sporulation as a survival strategy under unfavorable conditions. The Gram-positive classification suggests the presence of a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and potentially influencing its susceptibility to certain antibiotics.↵↵Given its optimal temperature, Alkalibacterium putridalgicola may thrive in mesophilic environments, which are commonly found in various terrestrial and aquatic habitats. The absence of sporulation raises questions regarding its survival strategies in fluctuating environmental conditions; however, its physiological traits may enable it to adapt to specific niches where nutrients are available. ↵↵The unique combination of its Gram-positive nature and optimal growth temperature indicates that Alkalibacterium putridalgicola could play a role in nutrient cycling within its ecosystem, particularly in environments where mesophilic, non-spore-forming bacteria are prevalent. Further research could elucidate its ecological interactions and contributions to microbial communities, as well as its potential biotechnological applications in processes requiring robust microbial activity at 37.0 °C." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alkalibacterium Alkalibacterium putridalgicola Gram-positive rod 37 mesophilic non-spore-forming 426703 FOBL00000000.1 Bac0003067 Bhargavaea beijingensis "Bhargavaea beijingensis is a Gram-positive, aerobic bacterium characterized by its spherical shape. It demonstrates non-spore-forming capabilities, which suggests that it relies on alternative survival mechanisms in its environmental niche. The optimal growth temperature for B. beijingensis is approximately 29.0°C, indicating a preference for moderate temperatures that may reflect its adaptation to specific ecological conditions. ↵↵As a member of the Bhargavaea genus, B. beijingensis is likely to contribute to microbial communities in various environments, although its precise ecological roles remain to be fully elucidated. The non-spore-forming nature of this species could imply a dependence on stable environmental conditions for survival and reproduction, which may limit its distribution compared to spore-forming bacteria that can endure harsher environments. ↵↵Further research into the ecological interactions and metabolic capabilities of Bhargavaea beijingensis could provide valuable insights into its potential roles in nutrient cycling and its interactions with other microorganisms in its habitat. Understanding these dynamics may reveal the importance of B. beijingensis in maintaining microbial diversity and ecosystem stability in its native environments." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Bhargavaea Bhargavaea beijingensis Gram-positive sphere non-motile aerobic 29 mesophilic non-spore-forming 426756 FNAR00000000.1 Bac0003068 Amedibacillus dolichus DSM 3991 "Amedibacillus dolichus DSM 3991 is a Gram-positive, obligate anaerobic bacterium. This microbe is characterized by its ability to thrive in environments devoid of oxygen, which is a critical trait for its metabolic processes and ecological niche. The Gram-positive nature of Amedibacillus dolichus indicates the presence of a thick peptidoglycan layer in its cell wall, which is typical of this classification and may confer certain advantages in terms of structural integrity and resistance to environmental stressors.↵↵As an obligate anaerobe, Amedibacillus dolichus relies on fermentation or anaerobic respiration for energy production. This metabolic adaptation allows it to occupy specific ecological niches where oxygen is limited or absent, potentially contributing to the breakdown of organic matter in anaerobic environments. The growth and activity of such bacteria can play a significant role in biogeochemical cycles, particularly in the context of carbon and nitrogen cycling.↵↵Further research into Amedibacillus dolichus could elucidate its specific metabolic pathways and ecological roles, particularly in anaerobic environments such as sediments, gastrointestinal tracts of animals, or other anoxic habitats. Understanding its physiology and interactions with other microorganisms could provide insights into the functional dynamics of microbial communities in these specialized ecosystems." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacillus Amedibacillus dolichus Positive Obligate anaerobe 428127 ABAW00000000.2 Bac0003069 Novosphingobium mathurense "Novosphingobium mathurense is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microorganism thrives optimally at a temperature of 32.0°C, suggesting a preference for mesophilic environments. The Gram-negative cell wall structure of N. mathurense is indicative of a double membrane system, which may play a role in its interactions within diverse ecological niches.↵↵As an aerobic organism, N. mathurense requires oxygen for its metabolic processes, which could limit its habitat to well-aerated environments. The absence of sporulation further suggests that this species may rely on rapid growth and reproduction under favorable conditions rather than developing resilience strategies associated with spore formation. ↵↵The unique combination of these traits positions Novosphingobium mathurense as a potential player in biogeochemical cycles, particularly in environments where organic matter degradation occurs. Its optimal growth temperature aligns with those commonly found in temperate ecosystems, hinting at its possible involvement in the decomposition processes within soil or sediment ecosystems. Further studies could elucidate its specific roles in nutrient cycling and its interactions with other microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium mathurense Gram-negative rod aerobic 32 mesophilic non-spore-forming 428990 FVZE00000000.1 Bac0003070 Sphingobium sp. HDIP04 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. HDIP04 428994 ATDO00000000.1 Bac0003071 Sphingopyxis terrae subsp. ummariensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis terrae 429001 FXWL00000000.1 Bac0003072 Ammonifex degensii KC4 "Ammonifex degensii (strain DSM 10501 / KC4) is an extremely thermophilic, strictly anaerobic Gram-positive bacterium isolated from a neutral volcanic hot spring. The temperature range for growth at is between 57 and 77 degrees Celsius, with optimum growth at 70 degrees Celsius. The optimum pH for growth is 7.5, and the optimum NaCl concentration for growth is 0.1%. Ammonifex degensii grows autotrophically by oxidation of hydrogen or formate, reducing nitrate to ammonium. Instead of nitrate, sulfate or sulfur are used as electron acceptors and H2S is formed as final product. Pyruvate is fermented to acetate, CO2, and hydrogen. (Adapted from PMID: 11539844). (EBI Integr8)" Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Ammonifex Ammonifex degensii KC4 Negative Bacilli Yes 1 1 Anaerobic 70 Chemolithoautotroph Thermophilic Specialized Free living No 429009 NC_013386.1 Bac0003073 Maribacter polysiphoniae str. DSM 23514 "Maribacter polysiphoniae str. DSM 23514 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism, thriving optimally at a temperature of 32°C. This strain, belonging to the genus Maribacter, is characterized by its unique morphological and physiological traits, which align with the environmental conditions it encounters. As a member of the broader microbial community, M. polysiphoniae str. DSM 23514 may play a significant role in the degradation of organic materials in marine environments, particularly in association with macroalgae such as Polysiphonia. The organism's aerobic nature suggests it utilizes oxygen for respiration, potentially influencing local oxygen dynamics in its habitat. Furthermore, the optimal growth temperature of 32°C indicates a preference for warm marine waters, which could enhance its competitiveness in thermally stable ecological niches. Understanding the growth conditions and metabolic capabilities of M. polysiphoniae str. DSM 23514 can provide insights into its ecological functions, particularly in biogeochemical cycling within coastal ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter polysiphoniae Gram-negative rod motile aerobic 32 mesophilic 429344 QGGQ00000000.1 Bac0003074 Pedobacter steynii str. DX4 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter steynii 430522 NZ_CP017141.1 Bac0003075 Roseateles terrae "Roseateles terrae is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. First identified in soil, this microbe thrives in oxygen-rich environments, where it plays a significant role in the microbial community. The rod shape of R. terrae is characteristic of many bacteria, which may contribute to its adaptability in various ecological niches.↵↵As a member of the bacterial domain, R. terrae is distinguished by its cellular structure, which includes a thin peptidoglycan layer typical of Gram-negative organisms, surrounded by an outer membrane containing lipopolysaccharides. This structural feature may not only influence its interaction with other microorganisms but also its resistance to certain environmental stresses.↵↵Research into R. terrae has highlighted its potential contributions to biogeochemical cycles, particularly in soil ecosystems where it may participate in nutrient cycling. The aerobic nature of this bacterium suggests it plays a role in the oxidation of organic compounds, which is crucial for maintaining soil health and fertility. ↵↵Further investigations into the metabolic pathways of R. terrae could reveal insights into its functional roles in the environment. Understanding how R. terrae interacts with other soil microbes and its contributions to ecosystem dynamics may provide valuable information for applications in agriculture and environmental management." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles terrae Gram-negative rod aerobic 431060 NIOG00000000.1 Bac0003076 Roseateles aquatilis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles aquatilis aerobic 431061 NIOF00000000.1 Bac0003077 Mycolicibacterium setense str. Manresensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium setense 431269 JTLZ00000000.1 Bac0003078 Acetobacter ghanensis str. LMG 23848T Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter ghanensis TV samples 431306 NZ_LN609302.1 Bac0003079 Clostridium kluyveri DSM 555 "Clostridium kluyveri is a Gram-positive, spore-forming bacterium. It is unique among the clostridia as it grows anaerobically on ethanol and acetate as sole energy sources, and has been extensively studied. Fermentation products are butyrate, caproate, and H2. It has been used as a source of enzymes, for example phosphotransacetylase for analytical purposes and enoate reductases for stereospecific hydrogenation reactions. A membrane-bound energy-converting NADH:ferredoxin oxidoreductase and a butyryl-CoA dehydrogenase complex coupling the reduction of crotonyl-CoA to butyryl-CoA with the reduction of ferredoxin represent a new energy-conserving module in anaerobes. The genes for NAD-dependent ethanol dehydrogenase and NAD(P)-dependent acetaldehyde dehydrogenase are located next to genes for microcompartment proteins, suggesting that the two enzymes, which are isolated together in a macromolecular complex, form a carboxysome-like structure. Unique for a strict anaerobe, C. kluyveri harbors three sets of genes predicted to encode for polyketide/nonribosomal peptide synthetase hybrides and one set for a nonribosomal peptide synthetase. The latter is predicted to catalyze the synthesis of a new siderophore, which is formed under iron-deficient growth conditions (modified from PubMed:18218779).Although strains DSM 555 (CLOK5, this strain) and NBRC 12016 (CLOK1) are purportedly coidentical type strains of Clostridium kluyveri there are differences in the genomic sequences. The DNA record for CLOK1 (AC AP009049) it says; ""The genome sequence of NBRC 12016 strain has the region containing phage-related genes (from 1.93 Mbp to 1.99 Mbp). A similar region occurs in DSM 555 (1.93 Mbp to 2.06 Mbp) but it is not only double the size of the NBRC12016 region, but also a duplicate."" Whether these differences are due to errors in sequencing and/or assembly, or due to divergent evolution of the two strains is indeterminate at present (April 2009). (HAMAP: CLOK5)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium kluyveri DSM 555 Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Aquatic Free living Pairs - Singles Sporulating No 431943 NC_009706.1 Bac0003080 Propioniciclava tarda str. DSM 22130 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propioniciclava Propioniciclava tarda anaerobic 433330 SDMR00000000.1 Bac0003081 Pseudacidovorax intermedius str. DSM 21352 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Pseudacidovorax Pseudacidovorax intermedius 433924 QQAV00000000.1 Bac0003082 Coxiella burnetii Dugway 5J108-111 "Coxiella burnetii is an obligate intracellular, Gram-negative bacterium that replicates within the phagolysosome of the eukaryotic phagocyte. It is the etiological agent of ""Q (Query) fever"". It is highly infective to both humans and livestock, growing to high titer in livestock placental tissues. Thus natural infection mostly results from exposure to dust or aerosol from ruminant birth fluids. In humans, the disease manifests as an acute flu-like illness. The bacteria are found as 2 particles, both of which are infectious. The small cell variants (SCV), are responsible for the ability to survive extreme environmental conditions of desiccation, heat, sonication, and pressure. In the host, the infecting SCV develop into large cell variants (LCV) that are metabolically active. The SCV and LCV are antigenically different, but do not correspond to stationary and log-phase growth stages as has been hypothesized. Transition between SCV and LCV is accompanied by changes in the expression of surface proteins and does not involve changes in lipopolysaccharide (LPS) structure. Infectious particles have been referred to as ""endospore-like"", but this nomenclature is misleading because they are not structurally similar to Bacillus spores. C.burnetii (SCV form) is able to survive outside the host in soil for extended periods of time. It shows high-level resistance to UV radiation, heat, dessication, pressure and osmotic and oxidative stress. It has already been weaponized and mass-produced under various biological warfare programs (adapted in part from PubMed: 17825460).The G isolate (Q212) was acquired in Nova Scotia, Canada, in 1982 from the aortic valve of a human endocarditis patient. It disseminates less and causes less inflammatory damage than the Nine Mile isolate (COXBU) following aerosol challenge of BALB/c mice. This strain has plasmid-like sequences integrated into its chromosome. Comparison with 3 other strains, Nine Mile, Dugway and CbuK_Q154 (COBXU, COXBN and COXB1, respectively) identified very few novel genes in each isolate, in agreement with the organism's obligate intracellular lifestyle that limits opportunities for genetic exchange. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii Dugway 5J108-111 Negative Cocci Yes 1 2 Facultative 37 Mesophilic HostAssociated Symbiotic Homo sapiens Singles Sporulating Yes 434922 NC_009727.1 Bac0003083 Pseudomonas sp. SMT-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SMT-1 435519 QJOV00000000.1 Bac0003084 Neisseria mucosa C102 "Neisseria mucosa C102 is a Gram-negative bacterium characterized by its facultative anaerobic metabolism. This organism is part of the Neisseria genus, which is known for its diverse range of species, some of which are significant in human health. The Gram-negative classification indicates that N. mucosa C102 possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that influences its susceptibility to antibiotics and its interactions with host environments.↵↵As a facultative anaerobe, N. mucosa C102 can thrive in both aerobic and anaerobic conditions, allowing it to occupy various ecological niches. This metabolic versatility suggests that it may play a role in diverse microbial communities, potentially adapting to fluctuating oxygen levels in its environment. The ability to utilize different metabolic pathways may give N. mucosa C102 a competitive advantage in colonizing specific habitats where oxygen availability varies.↵↵Understanding the traits of N. mucosa C102 can provide insights into its ecological roles, particularly in environments where it coexists with other microorganisms. Its adaptability may influence microbial community dynamics, contributing to the overall health and stability of its ecosystem. Future research could further elucidate the interactions of N. mucosa C102 with other microbial species and its potential contributions to biogeochemical cycles." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria mucosa Negative Facultative anaerobe 435832 ACRG00000000.1 Bac0003085 Lysobacter capsici str. KNU-14 "Lysobacter capsici strain KNU-14 is a rod-shaped bacterium that thrives in chromium-contaminated environments, specifically in water and on the leaves of ready-to-eat lettuce plants. This strain has been isolated from both chromium-contaminated water sources and Cr-contaminated plant water, indicating its potential adaptability to environments polluted with heavy metals.↵↵The presence of L. capsici KNU-14 in these habitats suggests it may play a role in the microbial community associated with contaminated sites, potentially contributing to bioremediation processes. Its ability to inhabit both aquatic and plant surfaces raises interesting questions about its ecological interactions and survival strategies in adverse conditions. Understanding its metabolic pathways and ecological functions may provide insights into the mechanisms by which it copes with heavy metal stress, as well as its potential applications in environmental microbiology. ↵↵This unique habitat preference not only highlights the versatility of L. capsici KNU-14 but also underscores the importance of studying microorganisms in contaminated ecosystems, where they may contribute to the detoxification of harmful substances." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter capsici Rod chromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water 435897 NZ_CP023465.1 Bac0003086 Salegentibacter salarius str. KCTC 12974 "Salegentibacter salarius strain KCTC 12974 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and thrives at an optimal temperature of 29.0°C. This organism is part of a larger group of bacteria known for their adaptations to saline environments, although specific salinity preferences for this strain have not been documented. The rod shape of S. salarius suggests a structural adaptation that may facilitate nutrient acquisition and motility in its environment, which is often characterized by varying osmotic conditions typical of marine or saline habitats.↵↵Being aerobic, S. salarius strain KCTC 12974 relies on oxygen for its metabolic processes, indicating its potential role in biogeochemical cycles, particularly in oxygen-rich environments. The optimal growth temperature of 29.0°C suggests that this organism may be well-suited for moderate thermal conditions, which are common in coastal marine ecosystems. ↵↵This strain's specific adaptations may enable it to contribute to the microbial diversity and functionality within its ecological niche, potentially influencing nutrient cycling and organic matter breakdown in saline environments. Further studies could elucidate the ecological roles of S. salarius strain KCTC 12974, particularly in relation to its interactions with other microorganisms and its contributions to biogeochemical processes in marine ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter salarius Gram-negative rod non-motile aerobic 29 mesophilic 435906 LKTR00000000.1 Bac0003087 Pseudidiomarina salinarum str. ISL-52 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina salinarum 435908 JPER00000000.1 Bac0003088 Franconibacter pulveris str. DJ34 "Franconibacter pulveris strain DJ34 is a Gram-negative, rod-shaped bacterium characterized by its versatile oxygen requirements, functioning as an aerobic organism while also exhibiting facultative anaerobic capabilities. This adaptability allows F. pulveris strain DJ34 to thrive in various environments, where it can utilize different metabolic pathways based on the availability of oxygen. ↵↵The rod morphology is typical of many members within the broader bacterial community, contributing to its potential interactions with other microorganisms and its ability to colonize diverse ecological niches. The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may play a critical role in its resilience to environmental stresses and its interactions with host organisms or competing microbes.↵↵The facultative anaerobic metabolism of F. pulveris strain DJ34 suggests a flexible ecological role, enabling it to exploit both aerobic and anaerobic conditions. This trait may foster its survival in environments where oxygen levels fluctuate, such as soil or decaying organic matter. Consequently, F. pulveris strain DJ34 could be an integral part of the microbial community in these settings, participating in nutrient cycling and contributing to the degradation of organic material, which underscores its potential ecological significance in maintaining ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Franconibacter Franconibacter pulveris Gram-negative rod aerobic / facultative aerobe/anaerobe 435910 LFEJ00000000.1 Bac0003089 Mycoplasma mycoides subsp. capri str. GM12 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides 436113 NZ_CP001668.1 Bac0003090 Sphingopyxis indica "Sphingopyxis indica is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of approximately 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on active metabolic processes for survival rather than the formation of resilient spores. Its Gram-negative cell wall structure is indicative of a complex outer membrane, which may contribute to its adaptability in various ecological niches. ↵↵The specific growth conditions and physiological traits of Sphingopyxis indica suggest that it may play a role in the degradation of organic compounds, a characteristic common among members of the Sphingopyxis genus. This capability is particularly relevant in environments where organic matter is abundant, such as soil and water systems. ↵↵Moreover, the aerobic nature of Sphingopyxis indica implies a potential involvement in biogeochemical cycles, particularly those involving oxygen-dependent processes. The ability to thrive at an optimal temperature of 29.0°C positions this organism within a temperate range, which may influence its distribution in various habitats. Overall, Sphingopyxis indica exemplifies the diverse metabolic strategies employed by bacteria within its genus, highlighting its potential contributions to ecological processes such as nutrient cycling and organic matter decomposition." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis indica Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 436663 FZPA00000000.1 Bac0003091 Candidatus Berkiella cookevillensis Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Berkiellales Candidatus Berkiellaceae Candidatus Berkiella Candidatus Berkiella cookevillensis 437022 LKHV00000000.2 Bac0003092 Brucella sp. F5/99 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella sp. F5/99 437701 ACFF00000000.1 Bac0003093 Pseudomonas marincola "Pseudomonas marincola is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0 °C. This organism is part of a diverse genus known for its metabolic versatility and ability to inhabit various environments, particularly aquatic systems. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can contribute to its resilience in fluctuating environmental conditions.↵↵The preference of Pseudomonas marincola for aerobic conditions suggests its reliance on oxygen for respiration, which may also influence its ecological roles, such as in the degradation of organic matter in marine habitats. This capability is particularly significant in nutrient cycling processes, where the bacterium may engage in the breakdown of complex organic compounds, thereby contributing to the overall health and stability of marine ecosystems.↵↵The optimal growth temperature of 25.0 °C aligns with typical marine environments, indicating that Pseudomonas marincola could play a role in the microbial dynamics of coastal waters. Its metabolic characteristics and habitat preferences position it as a potential participant in biogeochemical cycles, underscoring its importance in maintaining ecological balance in marine environments. Understanding the specific functions and interactions of Pseudomonas marincola within its ecosystem could provide insights into microbial community structure and function in marine settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marincola Gram-negative rod aerobic 25 mesophilic 437900 FPBC00000000.1 Bac0003094 Lewinella marina str. MKG-38 "Lewinella marina strain MKG-38 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This organism is part of the diverse microbial community found in marine environments, indicating its adaptation to specific ecological niches characterized by oxygenated waters. ↵↵The Gram-negative classification suggests that Lewinella marina possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may confer certain advantages in terms of interaction with its marine surroundings and resistance to environmental stresses. The rod shape of the bacterium is typical for many aquatic microorganisms, facilitating motility and nutrient uptake in its habitat.↵↵The optimal growth temperature of 29.0°C aligns with the thermal ranges often found in marine ecosystems, particularly those influenced by temperate conditions. This suggests that Lewinella marina may play a role in biogeochemical processes in marine environments, potentially contributing to nutrient cycling or the degradation of organic matter.↵↵Overall, the characteristics of Lewinella marina str. MKG-38 indicate its specialization for life in aerobic marine habitats, which may reflect adaptations that enhance its survival and ecological function in such environments. Further studies could elucidate the specific roles this bacterium plays in its ecosystem, particularly in relation to its physiological traits and interactions with other microbial communities." Pseudomonadati Bacteroidota Saprospiria Saprospirales Lewinellaceae Neolewinella Neolewinella marina Gram-negative rod aerobic 29 mesophilic 438751 PDLO00000000.1 Bac0003095 Streptococcus henryi "Streptococcus henryi is a Gram-positive, spherical-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites, including the skin, respiratory, gastrointestinal, and genitourinary tracts of humans and animals, and is a facultative anaerobe. The Gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram staining procedure. The spherical shape of S. henryi allows it to maintain a large surface area, facilitating the uptake of nutrients and interaction with its environment. As a mesophilic microbe, S. henryi grows best in temperatures between 20-45°C, making it well-suited to thrive in various environments.As a chemoheterotroph, S. henryi relies on organic compounds for energy and carbon, breaking down these molecules to sustain its metabolic processes. This characteristic allows the microbe to inhabit a wide range of environments, from the human body to soil and water. The ability of S. henryi to inhabit various body sites is a testament to its adaptability and resilience. As a facultative anaerobe, S. henryi can grow in the presence or absence of oxygen, allowing it to thrive in diverse environments with varying oxygen levels. S. henryi has been isolated from clinical specimens, and its presence can be an indicator of infection or disease, highlighting the importance of further research into this microbe." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus henryi Gram-positive Cocci No 1 439219 FMXP00000000.1 Bac0003096 Rhizorhabdus histidinilytica Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Rhizorhabdus Rhizorhabdus histidinilytica 439228 FUYM00000000.1 Bac0003097 Mycobacterium avium subsp. hominissuis "Mycobacterium avium subsp. hominissuis is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement. As a microaerophilic organism, it thrives in low-oxygen environments, which is consistent with its habitat associated with hosts. This subspecies is a chemoorganotroph, indicating that it derives its energy from organic compounds, a trait that underlines its adaptability to various host-associated niches.↵↵Optimal growth for Mycobacterium avium subsp. hominissuis occurs at 37.0 degrees Celsius, aligning with the body temperature of warm-blooded hosts. This temperature preference suggests an evolutionary adaptation to living within animal hosts, where it may exploit nutrient resources available in host tissues or biological fluids.↵↵The ecological significance of Mycobacterium avium subsp. hominissuis lies in its potential interactions within host environments, which may include symbiotic relationships or competition with other microbial flora. Its ability to survive and thrive in specific microaerophilic conditions highlights the intricate balance of microbial communities in host-associated habitats, where oxygen levels can fluctuate significantly. Understanding the traits of this subspecies contributes to a broader comprehension of microbial diversity and its implications for health and disease in host organisms." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 439334 NZ_CP029334.1 Bac0003098 Brucella anthropi ATCC 49188 "Brucella anthropi ATCC 49188 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits strict aerobic growth. As a member of the genus Brucella, this microorganism is characterized by its unique morphological and physiological traits, which are important for its classification and potential applications in microbiological research.↵↵Being Gram-negative, B. anthropi possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interactions with the environment and other organisms. The rod shape of this bacterium contributes to its motility and ability to colonize various substrates in its terrestrial habitat. Furthermore, its aerobic nature indicates that it relies on oxygen for growth, which may limit its distribution to well-aerated soils or environments.↵↵The ecological significance of Brucella anthropi ATCC 49188 may be associated with its potential role in nutrient cycling within terrestrial ecosystems. Its ability to thrive in aerobic conditions suggests that it could participate in the decomposition of organic matter or interact with plant roots, thereby influencing soil health and fertility. Understanding the specific ecological interactions of this bacterium could provide insights into its contributions to microbial diversity and ecosystem function in terrestrial habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella anthropi Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 439375 NC_009668.1 Bac0003099 Sulfolobus islandicus Y.G.57.14 "Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone 1), also called Yellowstone 1, is an aerobic thermo-acidophilic archaeum commonly identified in hot, acidic sulfur springs and isolated from a hot spring in Yellowstone National Park. S. islandicus can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. Like other Sulfolobus spp., S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. (Adaptated from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=19487 and PMID:19435847). (HAMAP: SULIY)" Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus Y.G.57.14 Cocci No 1 1 Facultative aerobe 75 Heterotroph Hyperthermophilic Hot spring Free living Singles Nonsporulating No 439386 NC_012622.1 Bac0003100 Aciduliprofundum boonei T469 "Aciduliprofundum boonei (strain DSM 19572 / T469) is an obligate thermoacidophilic, anaerobic, chemolithoautotrophic archaeon isolated from hydrothermally heated black smoker wall at the Mid Atlantic Ridge depth 3650m. A. boonei grows at pH between 3.3 and 5.8 with an optimum temperature of 70 degrees Celsius. This organism is a chemoorganotroph, using iron and sulfur as electron donors. It produces chains of vesicles that during growth. (Adapted from PMID: 18445019). (HAMAP: ACIB4)" Methanobacteriati Thermoplasmatota Candidatus Aciduliprofundum Candidatus Aciduliprofundum boonei T469 Cocci Yes 1 1 Anaerobic 70 Chemolithoautotroph Thermophilic Aquatic Free living No 439481 NC_013926.1 Bac0003101 Pseudovibrio sp. JE062 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Pseudovibrio Pseudovibrio sp. JE062 439495 ABXL00000000.1 Bac0003102 Ruegeria sp. R11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. R11 439497 ABXM00000000.1 Bac0003103 Cereibacter ovatus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter ovatus 439529 OAOQ00000000.1 Bac0003104 Escherichia coli SMS-3-5 "Escherichia coli SMS-3-5 is a species of bacteria that belongs to the family Enterobacteriaceae. This microbe prefers temperatures within the mesophilic range, thriving between 25°C and 40°C. In terms of metabolism, E. coli SMS-3-5 is a chemoheterotroph, meaning it cannot produce its own food andinstead relies on organic compounds as its energy source. E. coli SMS-3-5 produces energy through aerobic respiration, a process that involves the breakdown of glucose and other organic molecules in the presence of oxygen. The bacterium stains Gram-negative, characterized by the absence of a peptidoglycan layer in its cell wall. Its shape is rod-shaped, with a characteristic elongated morphology. E. coli SMS-3-5 has been isolated from various body sites, including the gastrointestinal tracts of animals and humans, as well as soil and water environments. The microbe is an obligate aerobe, requiring oxygen to grow and thrive. In fact, it is sensitive to anaerobic conditions and is unable to survive in the absence of oxygen. One of the most unique aspects of E. coli SMS-3-5 is its ability to biofilm formation, which allows it to adhere to surfaces and form complex communities with other microorganisms. This property has implications for its role in environmental and clinical settings, where it may contribute to the formation of biofilms and infections. Finally, E. coli SMS-3-5 has been found to possess a number of unique genetics features, including a plasmid-encoded tetracycline resistance gene. This has significant implications for its role in the spread of antimicrobial resistance in the environment and among humans. Additionally, its ability to form biofilms and resist antibiotics makes it a challenging target for treatment and control." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli SMS-3-5 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic Multiple Free living Homo sapiens Pairs - Singles Nonsporulating 439855 NC_010498.1 Bac0003105 Methylorubrum extorquens CM4 "Methylorubrum extorquens CM4 is a Gram-negative, rod-shaped bacterium that primarily exists in terrestrial habitats and functions as a methylotroph, utilizing methanol and other one-carbon compounds as its energy source. This microbe is typically found in single cells or pairs, reflecting its cellular arrangement. It thrives optimally at a temperature of 30.0°C, indicating a preference for moderate environmental conditions.↵↵As an aerobic organism, Methylorubrum extorquens CM4 requires oxygen for its metabolic processes, which is characteristic of many methylotrophic bacteria that oxidize methanol and other methyl compounds to generate energy. The ability to metabolize these compounds not only allows this microbe to occupy specific ecological niches but also highlights its potential role in carbon cycling within its habitat. ↵↵The trait of being a methylotroph suggests that Methylorubrum extorquens CM4 may contribute to the degradation of methanol and other methylated substrates in its environment, which can have implications for biogeochemical processes. This metabolic capability may also situate it as a beneficial organism in biotechnological applications aimed at waste treatment or bioremediation, particularly in contexts where methylated compounds are present. Overall, its specialized metabolism underscores the importance of Methylorubrum extorquens CM4 in terrestrial ecosystems, particularly in the context of carbon transformation and energy flow." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum extorquens Negative Rod Yes 1 2 Aerobe 30 Methylotroph Mesophilic Terrestrial Free living Singles - Pairs 440085 NC_011760.1 Bac0003106 Pelagibacterium luteolum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Pelagibacterium Pelagibacterium luteolum 440168 FNCS00000000.1 Bac0003107 Acholeplasma laidlawii PG-8A "Acholeplasma laidlawii is found in soil, compost, wastewaters, cell cultures as well as in human tissues and in many animal species (birds, bovine, goat, equine, ovine, porcine, feline, rodent, primates). Acholeplasma species are capable of de novo biosynthesis of carotenoids localized exclusively in the cell membrane. Acholeplasma laidlawii is capable of synthesizing glucose using a pyrophosphate-dependent 6-phosphofructokinase which has also been detected in other acholeplasmas. Acholeplasma laidlawii and phytoplasmas are the only mollicutes known to use the universal genetic code, in which UGA is a stop codon. (HAMAP: ACHLI)" Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii PG-8A Positive Cocci No 1 1 Facultative 37 Mesophilic Specialized Free living No 441768 NC_010163.1 Bac0003108 Clostridium botulinum F str. Langeland "Clostridium botulinum F str. Langeland is a gram-positive, rod-shaped bacterium that thrives in anaerobic environments, exhibiting a preference for mesophilic temperatures. As a chemoheterotroph, it derives energy from organic compounds, which it metabolizes in the absence of oxygen. This organism is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, making it commonly found in low-oxygen environments such as soil, sediments, and the intestines of various animals. The structural characteristics of C. botulinum Langeland include a thick peptidoglycan layer that helps it retain the gram stain, affirming its classification as gram-positive. The rod shape of the bacterium allows for efficient colonization and resource acquisition in its preferred habitats. Its mesophilic temperature preference indicates that it grows optimally at moderate temperatures, typically between 20°C and 37°C, which coincides with the natural temperature ranges of many habitats. As a chemoheterotroph, C. botulinum Langeland utilizes complex organic materials, illustrating its role in nutrient cycling within its ecosystem. Its ability to thrive in anaerobic conditions makes it adept at surviving in environments where other microorganisms may falter. Notably, C. botulinum is infamous for producing botulinum toxin, one of the most potent neurotoxins known, which can lead to the potentially fatal illness botulism in humans and animals.Furthermore, strains like Langeland are of particular interest in the study of food safety, as they can contaminate improperly preserved or home-canned foods, highlighting the importance of understanding their ecological role and pathogenic potential. The study of such strains continues to shed light on their genetics, toxin production mechanisms, and potential applications in therapeutic contexts, such as the treatment of certain muscle disorders." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Langeland Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Pairs - Singles - Chains Sporulating Yes 441772 NC_009700.1 Bac0003109 Halomonas xianhensis str. 6_TX "Halomonas xianhensis str. 6_TX is a Gram-negative, rod-shaped bacterium that thrives optimally at 29.0°C and exhibits aerobic metabolic capabilities. This organism belongs to the genus Halomonas, which is known for its halophilic characteristics, though specific salinity preferences for this strain are not provided in the available data. ↵↵As a member of the Halomonas genus, H. xianhensis str. 6_TX is likely adapted to saline environments, which are typical habitats for many Halomonas species. The aerobic nature of this strain suggests that it relies on oxygen for its growth and energy production, which may confer advantages in environments where oxygen is readily available. ↵↵The optimal growth temperature of 29.0°C indicates that H. xianhensis str. 6_TX may be well-suited for environments that resemble moderate temperatures, such as coastal regions or saline lakes. This adaptability to specific thermal conditions could influence its ecological role in such habitats, potentially contributing to biogeochemical cycling in saline aquatic systems. Further research into the metabolic pathways and ecological interactions of H. xianhensis str. 6_TX may provide insights into its functional contributions to microbial communities in hypersaline environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Modicisalibacter Modicisalibacter xianhensis Gram-negative rod non-motile aerobic 29 mesophilic 442341 SOEC00000000.1 Bac0003110 Scopulibacillus darangshiensis str. DSM 19377 Bacillati Bacillota Bacilli Caryophanales Sporolactobacillaceae Scopulibacillus Scopulibacillus darangshiensis 442528 SLXK00000000.1 Bac0003111 Xanthomonas perforans Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas perforans 442694 NZ_CP018472.1 Bac0003112 Ulvibacter antarcticus str. DSM 23424 "Ulvibacter antarcticus strain DSM 23424 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This species is part of a broader category of marine bacteria, which are often associated with various ecological roles in aquatic environments. ↵↵The Gram-negative nature of U. antarcticus indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interactions with the environment, including its susceptibility to certain antibiotics and its ability to engage in complex microbial interactions. The rod shape of this bacterium may facilitate efficient nutrient uptake and motility in its aquatic habitat, adapting well to changes in environmental conditions.↵↵Given its optimal growth temperature, U. antarcticus is likely adapted to cooler marine environments, possibly including polar regions, which could provide insights into its ecological niche and potential roles in nutrient cycling in such ecosystems. The aerobic requirement of this strain suggests its involvement in processes that require oxygen, which may include the degradation of organic matter or the cycling of elements such as carbon or nitrogen in marine habitats. Thus, the study of U. antarcticus could contribute to a better understanding of microbial dynamics in cold marine ecosystems and their responses to changing environmental factors." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Ulvibacter Ulvibacter antarcticus Gram-negative rod non-motile aerobic 25 mesophilic 442714 REFC00000000.1 Bac0003113 Pedococcus dokdonensis "Pedococcus dokdonensis is a Gram-positive, non-spore-forming bacterium characterized by its spherical morphology. This microbe is classified as aerobic, indicating that it requires oxygen for its metabolic processes. Optimal growth conditions for P. dokdonensis are observed at a temperature of 29.0 °C, suggesting a preference for moderate environmental temperatures.↵↵The spherical shape of P. dokdonensis positions it within the diverse group of lactic acid bacteria, which are known for their roles in fermentation and various industrial applications. Its Gram-positive nature implies a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria in this group. The absence of sporulation indicates that P. dokdonensis relies on other survival strategies, potentially influencing its ecological niches and interactions within microbial communities.↵↵The traits of P. dokdonensis, particularly its aerobic metabolism and optimal growth temperature, suggest that it may thrive in environments where organic matter is present and oxygen levels are sufficient, such as in certain fermented food products or specific ecological niches. Understanding the physiological characteristics of P. dokdonensis can provide insights into its potential applications in food science and biotechnology, particularly in the development of fermentation processes." Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Pedococcus Pedococcus dokdonensis Gram-positive sphere non-motile aerobic 29 mesophilic non-spore-forming 443156 NZ_LT629711.1 Bac0003114 Hoyosella subflava DQS3-9A1 str. DQS-9A1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Hoyosellaceae Hoyosella Hoyosella subflava 443218 NC_015560.1 Bac0003115 Devosia geojensis str. BD-c194 "Devosia geojensis strain BD-c194 is a Gram-negative, aerobic, rod-shaped bacterium that exhibits optimal growth at a temperature of 32.0°C. This microbe is characterized by its non-spore-forming nature, which indicates a reliance on vegetative growth for survival and reproduction under suitable environmental conditions. As a member of the genus Devosia, it shares common traits with other species in this group, often associated with various ecological niches.↵↵The aerobic requirement of D. geojensis strain BD-c194 suggests that it plays a role in environments where oxygen is readily available, potentially participating in biogeochemical cycles. Its optimum temperature of 32.0°C indicates a preference for moderate thermal conditions, which may reflect ecological adaptations to specific habitats such as soil or aquatic environments that experience similar temperature ranges.↵↵Understanding the growth characteristics of D. geojensis strain BD-c194 can provide insights into its potential applications in bioremediation or biotechnology, particularly in processes that require aerobic conditions. The non-spore-forming trait may also emphasize the need for stable environmental conditions for its proliferation and survival. Overall, the physiological traits of this bacterium underscore its potential interactions within microbial communities, contributing to nutrient cycling and the maintenance of ecosystem functionality." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia geojensis Gram-negative rod aerobic 32 mesophilic non-spore-forming 443610 JZEX00000000.1 Bac0003116 Clavibacter michiganensis subsp. michiganensis NCPPB 382 "Clavibacter michiganensis subsp. sepedonicus is a plant-pathogenic actinomycete that causes the bacterial ring rot, a devastating agricultural disease. Its genome is made up of a circular chromosome and two plasmids, one circular pCS1 and one linear pCSL1. It contains 106 insertion elements that appear to be randomly distributed. Only five IS are inserted directly into CDSs. It contains 110 pseudogenes, accounting for 3.4% of the CDSs. This high level of nonfunctional genes suggests that there has been genome decay, a phenomenon often associated with bacterial lineages that have recently acquired a new niche. Their distribution shows an overrepresentation in transport and degradation of carbohydrates, regulation and functions related to pathogenicity and adaptation. Intriguingly, the cellulase gene celB, an important determinant in pathogenicity, is disrupted. However, it should be noted that the plasmid-borne cellulase gene celA is intact. These genomic features suggest a recent adaptation for life in a restricted niche.Clavibacter michiganensis subsp. sepedonicus appears indeed to be largely restricted to an endophytic lifestyle, proliferating within plant tissues and unable to survive in the absence of plant material.The bacterium spreads easily within potato farms during seed cutting and can be readily disseminated in latently infected tubers by contaminated farm equipment, in storage facilities or in packing materials. The main economic loss occurs in the seed industry but losses can also occur in the fresh and processed potato industries. Bacterial ring rot is normally associated with the temperate climates of North America, Scandinavia, Northern Europe and Asia. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis NCPPB 382 Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles Nonsporulating No 443906 NC_009478.1 Bac0003117 Ammonifex thiophilus str. SR "Ammonifex thiophilus str. SR is a Gram-positive, rod-shaped bacterium known for its capacity to form spores, which contributes to its resilience in anaerobic environments. This species thrives optimally at a temperature of 45.0°C, indicating a preference for moderately thermophilic conditions. As an anaerobe, A. thiophilus str. SR plays a significant role in biogeochemical cycles, particularly in environments where oxygen is limited, such as deep-sea hydrothermal vents or hot springs.↵↵The ability to sporulate allows A. thiophilus str. SR to withstand extreme conditions that may be detrimental to non-spore-forming bacteria, ensuring its survival in fluctuating environments. This trait is particularly advantageous in thermophilic habitats where temperatures can vary significantly. The ecological importance of A. thiophilus str. SR may extend to its involvement in sulfur and nitrogen cycles, as its metabolic processes likely contribute to the transformation of these elements in anaerobic ecosystems. Thus, the unique combination of its spore-forming ability and optimal growth temperature positions A. thiophilus str. SR as a key player in the microbial communities of high-temperature, low-oxygen environments, potentially influencing nutrient cycling and energy flow in such niches." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Ammonifex Ammonifex thiophilus Gram-positive rod anaerobic 45 thermophilic spore-forming 444093 QSLN00000000.1 Bac0003118 Pyrobaculum neutrophilum V24Sta "Pyrobaculum neutrophilum V24Sta is a rod-shaped, nonsporulating anaerobic microbe that thrives optimally at temperatures around 85.0°C. This organism is classified as an autotroph, indicating its ability to synthesize organic compounds using inorganic carbon sources, which is particularly advantageous in its specialized habitat. ↵↵The extreme thermophilic nature of P. neutrophilum V24Sta suggests its presence in high-temperature environments, potentially including hydrothermal vents or hot springs, where such conditions prevail. The anaerobic requirement of this species highlights its adaptation to oxygen-depleted niches, where it may play a role in the cycling of nutrients, especially in environments rich in volcanic activity or organic matter decomposition.↵↵The specialized habitat of Pyrobaculum neutrophilum V24Sta further emphasizes its ecological role, as organisms adapted to such extreme conditions often contribute significantly to biogeochemical processes. Understanding the metabolic pathways and energy acquisition strategies of this organism could provide insights into the ecological balances within extreme environments and enhance our knowledge of microbial life in similar habitats throughout the biosphere." Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum neutrophilum Rod No 1 1 Anaerobe 85 Autotroph Hyperthermophilic Specialized Free living Nonsporulating 444157 NC_010525.1 Bac0003119 Lysinibacillus sphaericus C3-41 "Lysinibacillus sphaericus C3-41 is a gram-positive, spherical-shaped bacterium that thrives in mesophilic temperatures, categorizing it as a Chemoheterotroph, and can be found in various body sites across different species, including the gastrointestinal tract, respiratory tract, and skin of humans, animals, and insects. As a Facultative Anaerobe, it can survive in both aerobic and anaerobic environments, making it a versatile microorganism. The gram-positive characteristic of L. sphaericus C3-41 indicates that it has a thick peptidoglycan layer in its cell wall, providing it with a robust defense against environmental stresses. Its spherical shape allows it to maintain a stable structure, which is beneficial for its survival in diverse environments. As a mesophilic bacterium, L. sphaericus C3-41 grows optimally in temperatures between 20-45°C, making it well-suited for growth in many natural and artificial environments. As a Chemoheterotroph, L. sphaericus C3-41 relies on organic compounds for energy and carbon, which it obtains from its surroundings. Its ability to inhabit various body sites across different species highlights its adaptability and capacity to form symbiotic relationships with its hosts. The Facultative Anaerobe nature of L. sphaericus C3-41 enables it to thrive in environments with or without oxygen, allowing it to colonize a wide range of ecological niches. Lysinibacillus sphaericus C3-41 has been found to produce mosquito-larvicidal proteins, making it a potential biocontrol agent for mosquito-borne diseases such as malaria and dengue fever. Its unique characteristics and capabilities have led to extensive research into its applications in biotechnology and public health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sphaericus C3-41 Positive Rod Yes 1 1 Aerobe Mesophilic Specialized Free living Sporulating No 444177 NC_010382.1 Bac0003120 Brucella ovis ATCC 25840 str. ATCC25840 "Brucella ovis ATCC 25840 str. ATCC25840 is a Gram-negative, rod-shaped bacterium that exhibits a range of cellular arrangements, including chains, pairs, and singles. This organism is classified as a facultative aerobe, indicating its ability to grow in both the presence and absence of oxygen, which may contribute to its adaptability in various host-associated environments. The optimal growth temperature for B. ovis is 37.0°C, aligning with the typical body temperature of many mammals, suggesting a close association with warm-blooded hosts.↵↵As a host-associated microbe, B. ovis is particularly adapted to its biological niche, potentially influencing the host’s immune response and microbiota composition. The ability to form different cellular arrangements may play a role in its survival strategy and could facilitate its interactions within host tissues. Understanding the growth characteristics and environmental preferences of B. ovis is essential for further research into its biology and potential implications in veterinary and medical microbiology. This adaptation to host-associated environments highlights the need for ongoing studies to elucidate its ecological roles and the dynamics of its interactions with host organisms." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella ovis Negative Rod No 1 2 Facultative aerobe 37 Mesophilic HostAssociated Free living Chains - Pairs - Singles 444178 NC_009504.1 Bac0003121 Mycolicibacterium insubricum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium insubricum 444597 MVHS00000000.1 Bac0003122 Rickettsia endosymbiont of Ixodes scapularis Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia endosymbiont of Ixodes scapularis 444612 NZ_CM000770.1 Bac0003123 Clostridium botulinum Bf "Clostridium botulinum type B (C. botulinum Bf) is a Gram-positive, rod-shaped bacterium that thrives in a temperature range of 37°C to 45°C, falling under the category of mesophiles. Its metabolism is chemoheterotrophic, meaning it relies on organic compounds as its energy source, and produces energy through fermentation. This microbe is incapable of producing its own food through photosynthesis or chemosynthesis, relying solely on the breakdown of complex organic molecules to sustain itself. C. botulinum Bf is a gram-positive bacterium, characterized by a thick peptidoglycan layer in its cell wall. Its rod-shaped morphology is typical of many Clostridium species. This microbe can be found in a variety of body sites, including the gastrointestinal tract, respiratory tract, and skin, in both humans and animals. C. botulinum Bf is an obligate anaerobe, meaning it cannot survive in the presence of oxygen and requires a reducing environment to thrive. In fact, oxygen is toxic to this microbe, and exposure to even small amounts can lead to its rapid death. Despite its anaerobic nature, C. botulinum Bf is capable of producing toxins, most notably botulinum toxin, which can cause a range of symptoms from muscle weakness to paralysis. This toxin is often referred to as one of the most potent biological toxins known to science. In addition to its role in disease, C. botulinum Bf has also been explored for its potential applications in medicine, particularly in the area of cancer treatment. Studies have shown that this microbe can be used to deliver toxins specifically to cancer cells, leading to targeted therapy and improved treatment outcomes." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 445336 ABDP00000000.1 Bac0003124 Pandoraea thiooxydans str. DSM 25325 "Pandoraea thiooxydans str. DSM 25325 is a Gram-negative, rod-shaped bacterium that exhibits versatile metabolic capabilities, functioning as an autotroph, lithotroph, and chemotroph. This microorganism thrives optimally at a temperature of 29.0°C and is strictly aerobic, requiring oxygen for its metabolic processes. ↵↵As an autotroph, P. thiooxydans utilizes inorganic carbon sources for growth, which allows it to play a role in carbon cycling within its environment. Its lithotrophic and chemotrophic energy acquisition methods suggest that it can derive energy from inorganic compounds, positioning it as a potential contributor to biogeochemical processes, particularly in environments rich in sulfur and other minerals.↵↵The ability to thrive in aerobic conditions and utilize a range of energy sources indicates that P. thiooxydans may be well-adapted to specific ecological niches, such as those found in marine or terrestrial environments where sulfur compounds are prevalent. This adaptability could provide insights into its role in bioremediation or nutrient cycling in sulfur-rich habitats. Overall, the metabolic versatility of P. thiooxydans underscores its potential significance in microbial ecology and environmental microbiology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea thiooxydans Gram-negative rod aerobic 29 autotroph; lithotroph; chemotroph mesophilic 445709 NZ_CP011568.3 Bac0003125 Elusimicrobium minutum Pei191 "Elusimicrobium minutum (strain Pei191) is a mesophilic, obligately anaerobic free-living ultramicrobacterium with a Gram-negative cell envelope isolated from the intestinal cluster from the hindgut of a humivorous scarab beetle larva. Cells are typically rod shaped, but cultures are pleomorphic in all growth phases. E.minutum grows heterotrophically on sugars and ferments D-galactose, D-glucose, D-fructose, D-glucosamine, and N-acetyl-D-glucosamine to acetate, ethanol, carbon dioxide, hydrogen, and alanine as major products but only if amino acids are present in the medium. The production of alanine from glucose is unusual. Alanine is not formed from other amino acids present in the medium but is, rather, derived from the carbon skeleton of glucose. E. minutum does not grow on amino acids, either by fermentation of single amino acids or by fermentation of amino acid pairs (Stickland reactions). Instead, it ferments amino acids only during growth on glucose, presumably by transamination with pyruvate and subsequent oxidative decarboxylation of the resulting 2-oxoacid. This leads the formation of the corresponding oxidative decarboxylation product from most proteinogenic amino acids and the net formation of alanine concomitant to the disappearance of the respective amino acid from the medium. On basal medium with glucose, the cells grow within a pH range of 6.2 to 8.2, and a temperature range of 20 to 32 degrees Celsius but not at 15 or 37 degrees Celsius. Highest growth rates are obtained at 30 degrees and pH 7.5. Growth is best in freshwater medium, but E. minutum also grows at 3.5% salt concentration. PCR-based screening and comparative 16S rRNA gene sequence analysis revealed that strain Pei191 belongs to the intestinal cluster (cluster III) of the Elusimicrobia phylum, a lineage of hitherto uncultivated bacteria present in arthropod and mammalian gut systems. It is only distantly related to the so-called endomicrobia lineage, which comprises mainly uncultivated endosymbionts of termite gut flagellates. (Adaptated from PMID: 19270133, 19270135). (EBI Integr8)" Pseudomonadati Elusimicrobiota Elusimicrobia Elusimicrobiales Elusimicrobiaceae Elusimicrobium Elusimicrobium minutum Pei191 Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Symbiotic No 445932 NC_010644.1 Bac0003126 Chryseobacterium jejuense "Chryseobacterium jejuense is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This organism is characterized by its distinct morphological and physiological traits, which are common within the Chryseobacterium genus. The Gram-negative nature of C. jejuense suggests a complex cell wall structure, typical of this group, which can influence its interactions with the environment and other microbes.↵↵The optimal growth temperature indicates that C. jejuense may be well-suited to moderate climates, potentially reflecting its native habitat. This adaptability to specific temperature ranges could provide insights into its ecological niche, suggesting a preference for environments that are consistently warm but not excessively hot. Additionally, the aerobic requirement implies that this microbe relies on oxygen for its metabolic processes, which may limit its distribution to well-aerated environments.↵↵Given these traits, C. jejuense may play a role in biogeochemical cycles within its habitat, particularly in the degradation of organic materials in oxygen-rich conditions. Its ability to thrive in such environments underscores the importance of aerobic bacteria in maintaining ecosystem health and nutrient cycling. Further research into C. jejuense could uncover its potential contributions to microbial communities and their functions in various ecological settings." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium jejuense Gram-negative rod non-motile aerobic 29 mesophilic 445960 UAWB00000000.1 Bac0003127 Chryseobacterium soli str. DSM 19298 "Chryseobacterium soli strain DSM 19298 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This organism is part of the broader Chryseobacterium genus, which is characterized by its diverse metabolic capabilities and ecological versatility. ↵↵As a member of the phylum Bacteroidetes, Chryseobacterium soli possesses traits that allow it to adapt to various environmental niches, although specific ecological interactions or habitats have not been detailed in the available data. The aerobic nature of this bacterium suggests an adaptation to oxygen-rich environments, potentially influencing its role in nutrient cycling within its ecosystem. ↵↵While the exact ecological functions of C. soli DSM 19298 remain to be fully elucidated, its ability to thrive at a relatively moderate temperature indicates a potential adaptation to specific terrestrial environments, possibly including soil habitats where it may contribute to organic matter decomposition. Further research could illuminate its interactions with other microbial communities and its potential applications in biotechnology or environmental science. Overall, C. soli DSM 19298 exemplifies the complex interplay of microbial life in aerobic environments, warranting investigation into its functional roles within the ecosystem." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium soli Gram-negative rod non-motile aerobic 29 mesophilic 445961 JPRH00000000.1 Bac0003128 Anaerofustis stercorihominis DSM 17244 "Anaerofustis stercorihominis DSM 17244 is a Gram-negative, rod-shaped bacterium classified as an obligate anaerobe and is categorized as a chemoheterotroph. This microbe thrives in a mesophilic temperature range, typically preferring temperatures between 30°C and 37°C. Anaerofustis stercorihominis has been isolated from human feces, indicating that its primary habitat is within the gastrointestinal tract of humans, where it plays a role in the complex microbiome. As a Gram-negative organism, Anaerofustis stercorihominis possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This structure contributes to its resistance against certain antibiotics and influences its interaction with the host's immune system. Its rod shape allows for mobility and colonization in the intestines, where nutrient-rich conditions are available for its growth. Being an obligate anaerobe, Anaerofustis stercorihominis cannot survive in the presence of oxygen, which makes its ecological niche limited to oxygen-free environments typically found within the digestive tract. As a chemoheterotroph, it derives its energy and carbon from organic compounds rather than synthesizing them from inorganic sources, relying on the fermentation of carbohydrates and proteins. The metabolic activities of Anaerofustis stercorihominis are significant for maintaining gut health, as they participate in the fermentation processes that produce short-chain fatty acids, which are essential for colonic health. These metabolites contribute to gut homeostasis and may inhibit the growth of pathogenic bacteria. Recent studies have suggested that shifts in the abundance of such gut microbes could be linked to various gastrointestinal disorders, highlighting the importance of Anaerofustis stercorihominis in microbiome research and therapeutic applications." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Anaerofustis Anaerofustis stercorihominis Positive Anaerobe 445971 ABIL00000000.2 Bac0003129 Intestinibacter bartlettii DSM 16795 "Intestinibacter bartlettii DSM 16795 is a Gram-positive, obligate anaerobic bacterium. This species was isolated from the human gut microbiota, highlighting its potential role in the complex ecosystem of the gastrointestinal tract. As a Gram-positive organism, I. bartlettii is characterized by a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and may influence its interactions within the gut environment. ↵↵Obligate anaerobes like I. bartlettii thrive in environments devoid of oxygen, relying on fermentation or other anaerobic metabolic pathways for energy production. This trait underscores the microbe's adaptation to the anaerobic conditions typically found in the human intestine, where it may contribute to the fermentation of dietary fibers and other substrates. The presence of such bacteria is essential for maintaining a balanced gut microbiome, which is crucial for nutrient absorption and overall gut health.↵↵The ecological role of I. bartlettii in the human gut microbiome may extend to interactions with other microbial species, potentially influencing community dynamics and metabolic processes. Understanding the specific functions and contributions of I. bartlettii to gut health can provide insights into the broader implications of gut microbiota composition on human health and disease. Further research into its metabolic capabilities and interactions within the gut ecosystem could elucidate its importance in maintaining intestinal homeostasis." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Intestinibacter Intestinibacter bartlettii Positive Obligate anaerobe 445973 FUXV00000000.1 Bac0003130 Borreliella burgdorferi ZS7 "Borreliella burgdorferi ZS7 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and nonsporulating nature. This species is primarily host-associated, indicating a close relationship with its biological hosts, which is essential for its survival and propagation. ↵↵As a member of the genus Borreliella, B. burgdorferi ZS7 exhibits traits typical of spirochetes, such as a helical structure, which may facilitate its motility in viscous environments, such as those encountered within host tissues. The microaerophilic requirement of this microbe suggests that it thrives in environments with reduced oxygen levels, potentially influencing its habitat selection and interactions with host organisms.↵↵The nonsporulating characteristic of B. burgdorferi ZS7 indicates that it does not form spores as a means of survival under adverse conditions, which may inform its ecological strategies and life cycle within host ecosystems. This trait can have implications for its persistence in biological systems, as it relies on the availability of suitable hosts for survival rather than forming dormant spores.↵↵In summary, Borreliella burgdorferi ZS7 exemplifies a specialized adaptation to a host-associated lifestyle, which may enhance its potential for transmission and survival in microenvironments characterized by specific oxygen levels. This highlights the intricate relationships that exist between microbiota and their hosts in the context of microbial ecology." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella burgdorferi Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Nonsporulating 445985 NC_011728.1 Bac0003131 Borreliella valaisiana VS116 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella valaisiana 445987 NC_012166.1 Bac0003132 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 "This soil bacterium has been known by a number of other names since its isolation (among them Nocardiopsis antarctica and Streptomyces flavidofuscus). Cells grow aerobically as hyphae and form elongated, smooth irregularly sized spores. N.dassonvillei has been isolated from a wide variety of habitats, including soil, glaciers, mildewed fodder, salterns and patients with conjunctivitis or cholangitis. This strain is the type strain, isolated in 1904, but it is not clear what its geographical and ecological origins are. It is an occasional human pathogen, causing actinomycetoma, which are bacteria-filled abcesses (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1373474). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis dassonvillei DSM 43111 No 1 1 Aerobic Mesophilic Multiple Free living Homo sapiens Yes 446468 NC_014210.1 Bac0003133 Acetobacter senegalensis str. 108B Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter senegalensis 446692 NZ_LN606600.1 Bac0003134 Acetobacter senegalensis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter senegalensis 446692 LHZU00000000.1 Bac0003135 Kocuria flava str. HO-9041 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria flava air; airborne 446860 NZ_CP013256.1 Bac0003136 Salegentibacter salinarum str. KCTC 12975 "Salegentibacter salinarum str. KCTC 12975 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderate thermal conditions that may be reflective of its natural habitat. ↵↵As a member of the genus Salegentibacter, this microbe is likely to be adapted to saline environments, which aligns with the genus's known associations with such conditions. The Gram-negative cell wall structure typically confers resilience against certain environmental stresses, potentially aiding in its survival in saline ecosystems. The aerobic nature of S. salinarum str. KCTC 12975 suggests that it relies on oxygen for its energy production, which may influence its distribution and ecological role within its habitat.↵↵The combination of these traits may allow Salegentibacter salinarum str. KCTC 12975 to play a significant role in nutrient cycling within saline environments, contributing to the overall microbial diversity and functionality in such ecosystems. Its ability to thrive in moderately warm and oxygen-rich conditions may also indicate its potential utility in biotechnological applications where saline conditions are prevalent." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter salinarum Gram-negative rod non-motile aerobic 29 mesophilic 447422 LKTS00000000.1 Bac0003137 Tenacibaculum soleae str. UCD-KL19 "Tenacibaculum soleae strain UCD-KL19 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and requires aerobic conditions for growth. This microbe is part of the Tenacibaculum genus, which is known for its association with marine environments. The Gram-negative nature of T. soleae indicates a distinct cellular structure characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interaction with the surrounding environment.↵↵The optimal growth temperature of 25.0°C suggests that T. soleae is well adapted to temperate marine conditions, potentially making it a significant player in the microbial communities of coastal waters. The aerobic requirement implies that this bacterium may engage in metabolic processes that depend on oxygen, which could be critical for its survival and function in its ecological niche.↵↵Understanding the traits of Tenacibaculum soleae str. UCD-KL19 contributes to a broader comprehension of marine microbiomes, particularly in how such organisms adapt to their environments and participate in biogeochemical cycles. This strain may offer insights into the complex interactions that occur within marine ecosystems, highlighting its potential role in nutrient cycling and organic matter decomposition in aquatic environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum soleae Gram-negative rod motile aerobic 25 mesophilic 447689 MAKX00000000.1 Bac0003138 Trichormus variabilis SAG 1403-4b "Trichormus variabilis SAG 1403-4b is a Gram-negative, filamentous bacterium characterized by its single-cell arrangement and heterotrophic metabolism. This microbe thrives in a variety of habitats, indicating its adaptability to diverse environmental conditions. As an aerobe, T. variabilis requires oxygen for its metabolic processes, which aligns with its filamentous structure that may enhance its surface area for gas exchange and nutrient absorption.↵↵The filamentous morphology of T. variabilis suggests a potential role in biofilm formation, facilitating interactions within microbial communities. This structural adaptation may allow the bacterium to occupy various ecological niches where resources are available. Furthermore, its heterotrophic nature indicates that T. variabilis relies on organic compounds as energy sources, which may contribute to nutrient cycling in its environments.↵↵Given its characteristics, Trichormus variabilis SAG 1403-4b may play an essential role in the degradation of organic matter and the maintenance of microbial diversity in its habitats. Understanding the ecological functions of this filamentous microbe could provide insights into its contributions to ecosystem dynamics, particularly in environments where organic substrates are prevalent." Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Trichormus Trichormus variabilis Negative Filamentous Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Filaments - Singles 447716 RSCM00000000.1 Bac0003139 Rickettsia prowazekii str. Rp22 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii 449216 NC_017560.1 Bac0003140 Microcystis aeruginosa NIES-88 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 449441 JXYX00000000.1 Bac0003141 Peribacillus frigoritolerans str. ZB201705 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus frigoritolerans 450367 NZ_CP030063.1 Bac0003142 Croceicoccus marinus Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Croceicoccus Croceicoccus marinus 450378 NZ_CP019604.1 Bac0003143 Coprobacillus sp. 8_1_38FAA Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. 8_1_38FAA 450746 ACTF00000000.1 Bac0003144 Veillonella sp. 6_1_27 "Veillonella sp. 6_1_27 is a Gram-negative, obligate anaerobic bacterium. This organism thrives in environments devoid of oxygen, suggesting its adaptation to anaerobic conditions commonly found in various ecological niches, such as the human gastrointestinal tract and oral cavity. The Gram-negative classification indicates that Veillonella sp. 6_1_27 possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may influence its interactions with other microbial species and host tissues.↵↵As an obligate anaerobe, Veillonella sp. 6_1_27 likely plays a significant role in anaerobic metabolic processes, including fermentation. Such metabolic capabilities can contribute to the degradation of organic matter in its habitat, potentially influencing nutrient cycling and microbial community dynamics. The presence of this species in anaerobic environments underscores its importance in maintaining ecosystem balance and functionality.↵↵Furthermore, the unique characteristics of Veillonella sp. 6_1_27 may provide insights into its role in symbiotic relationships within microbial communities, particularly in the context of human health, where it may interact with other gut microbiota to influence metabolic pathways or modulate immune responses. Understanding the traits and behaviors of Veillonella sp. 6_1_27 could offer valuable perspectives on the complexity of microbial interactions in anaerobic ecosystems." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. 6_1_27 Negative Obligate anaerobe 450749 ADCW00000000.1 Bac0003145 Phenylobacterium zucineum HLK1 "The genus Phenylobacterium comprises 5 species, the first 4 of which were isolated from water or soil. Strain HLK1 was isolated from the human erythroleukemia cell line K562. It is a Gram-negative rod, motile with a polar flagellum that is strictly aerobic and nonfermentative. Its grows optimally at 37 degrees C between pH 6.5 and 7.5. It is a facultative intracellular organism and may have pathogenic relevance with humans and mammals, as it can infect at least HeLa cells. Unlike known intracellular pathogens, P. zucineum maintains a stable association with its host cell without apparently affecting the growth and morphology of the latter (modified from PubMed 16908113 and 18700039). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium zucineum HLK1 Negative Rod Yes 1 2 Aerobe 37 Mesophilic HostAssociated Free living Homo sapiens 450851 NC_011143.1 Bac0003146 Mangrovibacter plantisponsor str. DSM 19579 "Mangrovibacter plantisponsor strain DSM 19579 is a Gram-negative, rod-shaped bacterium that exhibits a facultative aerobe/anaerobe metabolic profile, thriving optimally at a temperature of 29.0°C. This microbe's Gram-negative status indicates a unique cell wall structure characterized by a thin peptidoglycan layer and an outer membrane, which may contribute to its adaptability in varying oxygen environments. As a facultative organism, M. plantisponsor can utilize both aerobic and anaerobic metabolic pathways, enabling it to survive in diverse ecological niches where oxygen levels fluctuate.↵↵The optimal growth temperature of 29.0°C suggests that M. plantisponsor may be well-suited to environments that are warm yet not extreme, potentially indicating its presence in temperate aquatic systems or coastal regions where mangrove ecosystems are prevalent. Given its capability to thrive under varying oxygen conditions, this bacterium may play a role in nutrient cycling within these ecosystems, possibly contributing to organic matter decomposition and the maintenance of sediment health.↵↵Understanding the traits of Mangrovibacter plantisponsor str. DSM 19579 enhances our knowledge of microbial diversity in mangrove habitats, highlighting the potential for this organism to interact with other microbial communities and participate in biogeochemical processes essential for ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Mangrovibacter Mangrovibacter plantisponsor Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 451513 QGTS00000000.1 Bac0003147 Catenibacterium mitsuokai DSM 15897 "Catenibacterium mitsuokai DSM 15897 is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, of diverse species, including humans, animals, and insects. As a chemoheterotroph, Catenibacterium mitsuokai DSM 15897 relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. Its rod-shaped morphology allows it to adapt to different environments, from the gut microbiome to soil and water ecosystems. As an obligate anaerobe, this microbe requires the absence of oxygen to survive, which is reflected in its optimal growth conditions, typically in environments with low redox potential. The mesophilic temperature preference of Catenibacterium mitsuokai DSM 15897 indicates that it grows best in moderate temperatures, between 20-40°C, which is consistent with its presence in the gastrointestinal tract of warm-blooded organisms. Its gram-positive cell wall provides resistance to environmental stressors, while its rod shape enables it to move and colonize new areas. The ability of Catenibacterium mitsuokai DSM 15897 to inhabit various body sites and species suggests a high degree of adaptability and versatility. This microbe has been implicated in the degradation of complex polysaccharides and production of short-chain fatty acids, which can influence the host's energy metabolism and overall health. Catenibacterium mitsuokai DSM 15897 has also been found to produce antimicrobial compounds, which can help regulate the balance of the microbial community in its ecosystem." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Catenibacterium Catenibacterium mitsuokai Positive Anaerobe 451640 ACCK00000000.1 Bac0003148 Mycolicibacterium senegalense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium senegalense 451644 LQOP00000000.1 Bac0003149 Mycolicibacterium conceptionense str. D16 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium senegalense 451644 CTEF00000000.1 Bac0003150 Bacillus cereus 03BB108 "Bacillus cereus 03BB108 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen for growth and metabolism. ↵↵Bacillus cereus species are known for their ability to inhabit diverse environments, and strain 03BB108 is no exception, being found in multiple habitats. This versatility suggests a significant ecological role, potentially contributing to nutrient cycling in various ecosystems. The rod shape and chain arrangement may enhance its survival in these diverse conditions, facilitating effective colonization and interaction with other microbial communities.↵↵Understanding the specific ecological niches that Bacillus cereus 03BB108 occupies can provide insights into its biological interactions and potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 451709 NZ_CP009635.1 Bac0003151 Amphritea balenae str. JAMM 1525 "Amphritea balenae str. JAMM 1525 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism and optimal growth at 16.0°C. This strain does not form spores, which may influence its survival strategies in various environmental conditions. The ability to thrive in both aerobic and anaerobic environments suggests a versatile metabolic capacity, enabling it to adapt to fluctuating oxygen levels in its habitat.↵↵The specific temperature preference of 16.0°C indicates that Amphritea balenae str. JAMM 1525 is likely adapted to cooler environments, possibly including marine settings or other aquatic ecosystems where lower temperatures prevail. This trait may have ecological implications, as it suggests a potential role in nutrient cycling in such environments, where it could contribute to the degradation of organic matter and the recycling of nutrients.↵↵Furthermore, the facultative nature of its oxygen requirement may allow Amphritea balenae str. JAMM 1525 to occupy ecological niches that are less accessible to strictly aerobic or anaerobic organisms. The adaptability to varying oxygen levels, combined with its specific temperature range, underscores the potential ecological significance of this microbe in maintaining microbial diversity and functionality in cooler aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Amphritea Amphritea balenae Gram-negative rod facultative aerobe/anaerobe 16 psychrotolerant non-spore-forming 452629 RQXV00000000.1 Bac0003152 Opitutus terrae PB90-1 "Opitutus terrae (strain DSM 11246 / PB90-1) is a member of the Verrucomicrobia, a diverse phylum of organisms common in many terrestrial and aquatic habitats. This organism was isolated from rice paddy soil and has been detected in peat bog soil and other anoxic terrestrial environments. (EBI Integr8)" Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae PB90-1 Negative Cocci No 1 2 Anaerobe Mesophilic Aquatic Free living Chains - Pairs - Singles Nonsporulating No 452637 NC_010571.1 Bac0003153 Kitasatospora setae KM-6054 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora setae 29 mesophilic spore-forming 452652 NC_016109.1 Bac0003154 Sphingobium indicum UT26S "Sphingobium indicum UT26S is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolic activity. Its optimal growth temperature is approximately 28.0°C, indicating a preference for moderate environmental conditions. This microbe's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer, which is typical of this group and plays a role in its interaction with the surrounding environment.↵↵The aerobic nature of Sphingobium indicum UT26S suggests that it relies on oxygen for its respiratory processes, which may influence its distribution in soil ecosystems where oxygen levels can fluctuate. The habitat preference for terrestrial environments highlights its potential role in soil microbiomes, possibly contributing to nutrient cycling or the degradation of organic matter.↵↵Understanding the traits of Sphingobium indicum UT26S can provide insights into the ecological functions of similar microorganisms within terrestrial ecosystems, emphasizing their importance in maintaining soil health and facilitating biogeochemical processes. Furthermore, the optimal growth temperature of 28.0°C positions this bacterium within a range that may be conducive to its survival in temperate climates, suggesting a resilience to environmental variations." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium indicum Negative Rod No 1 2 Aerobic 28 Mesophilic Terrestrial Free living 452662 NC_014009.1 Bac0003155 Pseudarthrobacter chlorophenolicus A6 "Pseudarthrobacter chlorophenolicus A6 is a Gram-positive, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic growth. This microorganism is notable for its optimal growth temperature of 29.0°C, which suggests a preference for moderate environmental conditions, often found in soil ecosystems.↵↵Pseudarthrobacter chlorophenolicus A6 is nonsporulating, indicating that it does not form spores as a means of survival under adverse conditions. This trait may reflect its adaptation to stable terrestrial habitats where sporulation is less advantageous. The aerobic nature of this bacterium implies that it relies on oxygen for its metabolic processes, which is typical of many soil-dwelling microbes that play crucial roles in nutrient cycling.↵↵Given its terrestrial habitat and aerobic requirements, Pseudarthrobacter chlorophenolicus A6 could be involved in the decomposition of organic matter and the transformation of various compounds within the soil matrix. Its metabolic capabilities may contribute to the breakdown of chlorophenolic compounds, suggesting a potential role in bioremediation processes. The study of this organism could provide insights into microbial interactions within soil ecosystems and the practical applications of its metabolic pathways in environmental biotechnology." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter chlorophenolicus Positive Rod No 1 1 Aerobe 29 Mesophilic Terrestrial Free living Nonsporulating 452863 NC_011886.1 Bac0003156 Agromyces aureus str. AR33 "Agromyces aureus str. AR33 is a Gram-positive, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This species belongs to the genus Agromyces, which is characterized by its diverse metabolic capabilities and ecological versatility. The Gram-positive nature of A. aureus str. AR33 indicates a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria within this classification, often contributing to its resilience in various environments.↵↵The rod shape of A. aureus str. AR33 may confer advantages in nutrient absorption and motility, characteristics that are essential for survival in competitive microbial communities. While specific metabolic pathways and ecological roles of this strain have not been detailed, members of the Agromyces genus are typically involved in the degradation of complex organic materials, suggesting a potential role in nutrient cycling within their habitats.↵↵Given its optimal growth temperature, A. aureus str. AR33 may be particularly well-suited for environments that experience mild, temperate conditions, which could influence its distribution and ecological interactions. Understanding the specific ecological niche and functional contributions of A. aureus str. AR33 could provide insights into its role in soil health and microbial diversity. The adaptability of this strain in various environments underscores the importance of further research into its ecological interactions and potential applications in bioremediation or soil management." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces aureus Gram-positive rod motile 29 mesophilic 453304 NZ_CP013979.1 Bac0003157 Rhodobacter aestuarii "Rhodobacter aestuarii is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This microbe is part of the diverse Rhodobacter genus, which is known for its photosynthetic capabilities and ecological versatility. The Gram-negative cell wall structure of R. aestuarii is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer advantages in certain environmental conditions, including resilience to specific antibiotics and environmental stresses.↵↵As a member of the purple non-sulfur bacteria, R. aestuarii is likely involved in various biogeochemical cycles, particularly in aquatic and sediment environments where light is available. Its ability to perform anoxygenic photosynthesis suggests that it may utilize light energy to drive metabolic processes, potentially contributing to organic matter decomposition and nutrient cycling in its habitat.↵↵The distinct optimal temperature of 29.0°C indicates that R. aestuarii may be well-adapted to moderate thermal environments, which could influence its distribution in natural settings, such as coastal estuaries or warm freshwater bodies. This adaptation may also affect its interactions with other microbial communities, potentially facilitating niche differentiation or cooperation in multi-species assemblages. Overall, R. aestuarii exemplifies the ecological complexity of microbial life and the significance of temperature adaptation in shaping microbial community dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter aestuarii Gram-negative rod 29 mesophilic 453582 FTOG00000000.1 Bac0003158 Ignicoccus hospitalis KIN4/I "An anaerobic chemolithoautotrophic and hyperthermophilic archaeon, Ignicoccus hospitalis was isolated from a submarine hydrothermal system off the coast of Iceland. Optimal growth occurs at 90 degrees C utilizing molecular hydrogen, elemental sulfur, and carbon dioxide as the energy substrate, the electron acceptor, and the carbon source, respectively. It is the obligatory host of Nanoarchaeum equitans; up to a dozen N.equitans can be found on the surface of I.hospitalis without doing any apparent harm to the host. Ignicoccus species are unique among the Archaea in having two cell membranes; together with the cytoplasmic membrane, it encloses a huge periplasmic space, in which membrane-bound vesicles are found. I.hospitalis at 1.3 Mb has one of the smallest genomes among free-living bacteria and archaea, and shows signs of gene exchange with N.equitans as well as gene acquisition from Euryarchaeota and bacteria (adapted from PMID 19000309). (HAMAP: IGNH4)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignicoccus Ignicoccus hospitalis Kin4/I Negative Cocci No 1 2 Anaerobe Chemolithoautotroph Hyperthermophilic Aquatic Symbiotic Pairs - Singles Nonsporulating No 453591 NC_009776.1 Bac0003159 Xanthomonas hortorum pv. hederae str. CFBP4925 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hortorum 453603 MDEF00000000.1 Bac0003160 Lysobacter soli str. KCTC 22011 "Lysobacter soli strain KCTC 22011 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and thrives at an optimal temperature of approximately 29.0°C. As a member of the Lysobacter genus, this strain likely possesses the ability to utilize a variety of organic substrates, which is a characteristic feature of Lysobacter species. Gram-negative bacteria, including L. soli, are known for their complex cell wall structure, which includes an outer membrane that may contribute to their environmental resilience and adaptability.↵↵The aerobic nature of L. soli suggests that it requires oxygen for growth and metabolism, which may influence its distribution in various habitats. This oxygen requirement points to its potential ecological role in environments where oxygen is available, possibly contributing to the degradation of organic matter or participating in nutrient cycling. ↵↵The optimal growth temperature of 29.0°C indicates that L. soli is well-suited to moderate temperature environments, which may include soil or decaying organic materials. Given its traits, L. soli could play a significant role in soil health and biogeochemical processes, particularly in ecosystems where decomposition and nutrient recycling are essential. Further studies could elucidate its specific interactions within microbial communities and its potential applications in biotechnology or agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter soli Gram-negative rod motile aerobic 29 mesophilic 453783 QTJR00000000.1 Bac0003161 Limnothrix rosea IAM M-220 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus [Limnothrix rosea] IAM M-220 454133 NZ_CM007612.1 Bac0003162 Xanthomonas citri pv. mangiferaeindicae str. XC01 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 454594 CP016836.1 Bac0003163 Maritalea myrionectae str. HL2708#5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Maritalea Maritalea myrionectae 454601 NZ_CP021332.1 Bac0003164 Nocardia terpenica str. NC_YFY_NT001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia terpenica 455432 NZ_CP023778.1 Bac0003165 Nocardia terpenica str. IFM 0406 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia terpenica 455432 LWGR00000000.1 Bac0003166 Treponema pallidum subsp. pallidum SS14 "Treponema pallidum, is a helical to sinusoidal spirochaete with 2 membranes, a thin peptidoglycan layer and flagella that lie in the periplasmic space. It is the causative agent of syphilis, plays a role in the transmission and acquisition of HIV, and is a major cause of stillbirth and perinatal morbidity in the developing world. Even if the primary infection is localized, bacteria rapidly disseminate and cause manifestations in the cardiovascular and nervous systems. It is an obligate human parasite.The first T.pallidum strain to be sequenced was strain Nichols, which was isolated in 1912 from the cerebrospinal fluid of patient with secondary syphilis. It has since been passed in rabbits for nearly a century. This Chicago strain was isolated in 1951, has not been passed continually in rabbits and has had an important role in research on antigenic variation, immune escape and pathogen persistence. There are 44 nucleotide substitutions, 21 deletions and 75 insertions compared to the Nichols genome (adapted from PMID). (EBI Integr8)" Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema pallidum SS14 Negative Spirilla No 1 2 Anaerobe Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 455434 NC_010741.1 Bac0003167 Anaeromyxobacter dehalogenans 2CP-1 "Anaeromyxobacter dehalogenans (strain 2CP-1) is a slender Gram-negative rod-shaped spore-forming soil bacterium. It is capable of a gliding motility and it forms a spore-like structure. It was first isolated by anaerobic enrichment from a Michigan soil sample on 2-chlorophenol and acetate followed by growth of single plate-grown colonies. It is the first Myxobacterium that is found capable of anaerobic respiration, wherein it is able to grow by coupling the oxidation of both acetate or hydrogen, which is a distinguishing property of the organism from other reducing populations, to the reduction of ortho-substituted halophenols, ferric iron, nitrate, nitrite, nitrous oxide, manganese oxide, uranium (VI) and fumarate. Of interest is its unique respiratory reduction of nitrate and nitrite to ammonia which is not linked to its ability to reduce nitrous oxide to nitrogen gas. These metal-reducing microorganisms are widely distributed in the environment. Anaeromyxobacter strains have been found in undisturbed and contaminated soils and sediments, and evidence shows they also exist in acidic subsurface sediments and agricultural soils. A. dehalogenans is an important model organism that exists as both as a productive dechlorinator and metal reducer. By studying the potential interferences between the competing substrates in contaminated environments we can further understand bioremediation efforts. (adapted from PubMed 11823233 and http://microbewiki.kenyon.edu/index.php/Anaeromyxobacter_dehalogenans). (EBI Integr8)" Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-1 Negative Rod Yes 1 2 Aerobe; anaerobe Heterotroph Mesophilic Terrestrial Free living Sporulating No 455488 NC_011891.1 Bac0003168 Thermus parvatiensis str. RL Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus parvatiensis 456163 NZ_CP014141.1 Bac0003169 Glaesserella parasuis 29755 "Glaesserella parasuis 29755 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic metabolic capabilities. This microbe is primarily associated with host organisms, indicating its potential role in specific host-related environments. As a member of the Glaesserella genus, it is important to recognize that its characteristics and behaviors may be influenced by its interactions within the host ecosystem.↵↵The ability to thrive in both aerobic and anaerobic conditions suggests that G. parasuis 29755 may adapt to varying oxygen levels found in different host tissues or in response to physiological changes in the host environment. This flexibility in oxygen requirement could contribute to its survival and persistence within host-associated habitats.↵↵Understanding the ecological role of G. parasuis 29755 may provide insights into the dynamics of host-microbe interactions, particularly in contexts where this bacterium may influence or be influenced by the host's immune responses or microbiota composition. Further studies on its ecological relationships and metabolic versatility could elucidate its significance in specific biological contexts, highlighting the complexities of host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 456298 CBTX000000000.1 Bac0003170 Methanoregula boonei 6A8 Methanoregula boonei (strain 6A8) is an acidophilic archaeon phylogenetically associated with the kingdom Euryarchaeota. This organism was isolated from an acidic peat bog in New York State. It has an optimum pH of 5 and pH range between 4 and 6. Candidatus Methanoregula boonei (strain 6A8) represents a group of microorganisms previously identified only by 16S rRNA analysis. (HAMAP: METB6) Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula boonei 6A8 Rod No 1 1 Anaerobe 37 Mesophilic Terrestrial No 456442 NC_009712.1 Bac0003171 Bacteroides sp. 3_1_33FAA "Bacteroides sp. 3_1_33FAA is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments, presenting a temperature preference for mesophilic conditions (typically 30-37°C). As a member of the Bacteroides genus, it functions primarily as a chemoheterotroph, utilizing organic compounds for carbon and energy. This microbe is an obligate anaerobe, meaning it can only grow in environments devoid of oxygen, which is essential for its survival and metabolic processes. Bacteroides sp. 3_1_33FAA is commonly found in the gastrointestinal tracts of various animals, including humans, where it contributes to the complex microflora that aids in digestion and fermentation of complex polysaccharides. These bacteria play a crucial role in breaking down dietary fibers, resulting in the production of short-chain fatty acids that are beneficial for gut health and provide energy to the host. The metabolic versatility of Bacteroides sp. 3_1_33FAA extends beyond mere digestion; it may also participate in the synthesis of essential vitamins and the modulation of the immune response. The presence of this microbe can influence the microbial ecosystem, affecting nutrient absorption and overall health.Additionally, some strains of Bacteroides species, including Bacteroides sp. 3_1_33FAA, have been studied for their potential implications in health-related conditions, such as obesity and inflammatory bowel diseases. These findings underscore the significance of gut microbiota composition and its impact on human health, paving the way for potential therapeutic interventions targeting gut bacteria." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_1_33FAA Negative Anaerobe 457391 ACPS00000000.1 Bac0003172 Bacteroides sp. 4_1_36 "Bacteroides sp. 4_1_36 is a gram-negative, rod-shaped bacterium that thrives in anaerobic environments, exhibiting a temperature preference for mesophilic conditions. As a heterotroph, it derives energy from organic compounds, playing a crucial role in various ecosystems, particularly in the human gut microbiome. This microorganism is typically found in the intestines, oral cavity, and other body sites across different species, where it contributes to the complex interplay of bacterial communities. The gram-negative nature of Bacteroides sp. 4_1_36 is characterized by its thin peptidoglycan layer, surrounded by an outer membrane containing lipopolysaccharides, which can play a role in the bacterium's pathogenic potential and immune response evasion. Its rod-shaped morphology allows for efficient mobility and colonization in diverse environments, particularly the gastrointestinal tract, where it participates in the fermentation of carbohydrates and other substrates. As a mesophilic organism, Bacteroides sp. 4_1_36 thrives optimally at moderate temperatures, which corresponds with the internal conditions of the human body, facilitating its survival and metabolic activities. Being a heterotroph, it is capable of breaking down complex organic materials, significantly contributing to the digestion process by aiding in nutrient absorption and synthesis of essential vitamins, such as vitamin K. Furthermore, Bacteroides sp. 4_1_36 has a role in maintaining gut homeostasis; its presence can influence the composition of the gut microbiota and modulate immune responses. Dysbiosis, or an imbalance in these microbial communities, can lead to various health issues, highlighting the importance of this microbe in human health. Notably, the species is also studied for its potential impact on obesity, inflammatory bowel diseases, and other metabolic disorders." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 4_1_36 Negative Anaerobe 457393 QSUY00000000.1 Bac0003173 Bacteroides sp. 4_3_47FAA "Bacteroides sp. 4_3_47FAA is a Gram-negative, rod-shaped microbe that thrives in anaerobic environments, categorized as a chemoheterotroph and typically residing in the human gut. As an obligate anaerobe, it grows best in oxygen-free conditions, playing a crucial role in the human microbiome by contributing to the fermentation of complex polysaccharides and the production of short-chain fatty acids, which are vital for gut health. This specific strain of Bacteroides falls under the larger Bacteroides genus, known for its diversity and adaptability within various body sites in humans, including the oral cavity, gastrointestinal tract, and occasionally on the skin. The microbe's rod shape and Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, provide it with a defense mechanism against the host's immune system, enabling it to thrive in the competitive environment of the intestines. Bacteroides sp. 4_3_47FAA is known for its significant metabolic capabilities, including the breakdown of dietary fibers that are otherwise indigestible by human enzymes. This process not only aids in nutrient absorption but also helps regulate the immune system and maintain intestinal health. Furthermore, the production of short-chain fatty acids by these microbes has been linked to anti-inflammatory effects and the prevention of certain gut-related diseases. With its symbiotic relationship with humans, Bacteroides sp. 4_3_47FAA plays a pivotal role in maintaining a balanced gut microbiota. Its presence is essential for effective digestion and overall health, demonstrating the intricate interplay between human hosts and their microbial inhabitants. Research into this strain continues to reveal its potential applications in probiotics and therapeutic strategies for metabolic disorders." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 4_3_47FAA Negative Anaerobe 457394 ACDR00000000.2 Bac0003174 Bacteroides sp. 9_1_42FAA "Bacteroides sp. 9_1_42FAA is a Gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures (20-45°C), classified as a heterotrophic, obligate anaerobe. This microbe belongs to the Bacteroides genus, which is commonly found in the gastrointestinal tracts of various organisms, playing a crucial role in the breakdown of complex carbohydrates and maintaining gut health. As a Gram-negative organism, Bacteroides sp. 9_1_42FAA possesses a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, contributing to its pathogenic potential and interaction with the host immune system. The rod shape of this bacterium is typical for many species in the Bacteroidetes phylum, facilitating its movement within the viscous environment of the gut. Its mesophilic temperature preference indicates that it thrives in moderate heat, ideal for colonization in warm-blooded hosts. Being a heterotroph, Bacteroides sp. 9_1_42FAA derives its energy from organic compounds, primarily through the fermentation of carbohydrates present in the diet. Its obligate anaerobic nature necessitates an environment devoid of oxygen, which is characteristic of the gut microbiome where it contributes to metabolic processes without the interference of oxygen. This bacterium plays a vital role in the fermentation of dietary fibers, producing short-chain fatty acids that are beneficial for intestinal health and may influence host metabolism. Moreover, research has shown that Bacteroides sp. 9_1_42FAA can adapt to various dietary conditions, affecting its community dynamics within the gut microbiome. This adaptability may have implications for understanding the relationship between diet, gut health, and the overall immune response, providing insights into the potential for therapeutic interventions targeting the gut microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 9_1_42FAA Negative Anaerobe 457395 ACAA00000000.2 Bac0003175 Clostridium sp. 7_2_43FAA "Clostridium sp. 7_2_43FAA is a Gram-positive, rod-shaped bacterium that thrives in mesophilic temperature ranges, classified as a chemoheterotroph and an obligate anaerobe. This microorganism is primarily found in the human gut, as well as in various environmental niches such as soil and anaerobic sediments.Being Gram-positive, Clostridium sp. 7_2_43FAA retains the crystal violet stain due to its thick peptidoglycan layer in the cell wall, which provides resistance to environmental stresses. Its rod shape helps in motility, primarily through flagella, facilitating its movement in the anaerobic environments where it typically resides. The mesophilic preference indicates that it performs optimally at moderate temperatures, typically between 20°C and 45°C, which aligns with the intestinal habitat of its human host. As a chemoheterotroph, Clostridium sp. 7_2_43FAA derives its energy from the organic compounds it decomposes, playing a significant role in the degradation of complex carbohydrates and proteins within the gut microbiota. Its classification as an obligate anaerobe means that it cannot survive in the presence of oxygen, relying instead on fermentation processes to generate energy. Clostridium sp. 7_2_43FAA has garnered interest for its potential applications in biotechnology, particularly in bioremediation and in the production of biofuels, due to its efficient metabolic pathways. Additionally, it is studied for its role in the human microbiome, where it contributes to the complex interplay of gut health and disease, emphasizing the delicate balance between beneficial and pathogenic bacteria. This organism, like many in the Clostridium genus, has been linked to various metabolic conditions, making it a focal point of research in microbiology and health sciences." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. 7_2_43FAA Uncharacterized Anaerobe 457396 ACDK00000000.2 Bac0003176 Eubacterium sp. 3_1_31 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. 3_1_31 457402 ACTL00000000.1 Bac0003177 Fusobacterium animalis 7_1 "Fusobacterium animalis 7_1 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is associated with host organisms, indicating a potential symbiotic or commensal relationship within its habitat. ↵↵Given its anaerobic requirement, Fusobacterium animalis 7_1 likely occupies niches where oxygen levels are minimal, such as within the gastrointestinal tracts of animals. This suggests a specialized adaptation to environments rich in organic compounds, which are typically found in host-associated habitats. The inability to form spores points to a reliance on stable environments for survival and replication, further indicating its specific ecological role.↵↵Fusobacterium species, including F. animalis, are often involved in complex microbial communities, which can influence nutrient cycling and the maintenance of host health. The presence of Fusobacterium animalis 7_1 within host-associated environments may contribute to the overall microbial diversity, potentially aiding in digestion or modulating the host's immune response. Understanding its specific interactions within these communities could provide insights into the roles of anaerobic bacteria in host physiology and health." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 457405 NZ_CP007063.1 Bac0003178 Erysipelotrichaceae bacterium 2_2_44A "The Erysipelotrichaceae bacterium 2_2_44A is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in all body sites of various species, including the skin, gut, and respiratory tract, and is an obligate anaerobe. As a gram-positive bacterium, it has a thick peptidoglycan layer in its cell wall, providing resistance to certain environmental stresses. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients and interaction with its environment. The mesophilic temperature preference of this bacterium indicates that it grows best in moderate temperatures, typically between 20-45°C, making it well-suited to inhabit a variety of ecosystems. As a chemoheterotroph, the Erysipelotrichaceae bacterium 2_2_44A relies on organic compounds for energy and carbon, obtaining these nutrients by breaking down complex molecules. Its presence in all body sites of various species suggests a high degree of adaptability and ability to form symbiotic relationships with its hosts. The obligate anaerobic nature of this microbe means that it requires the absence of oxygen to grow and survive, often inhabiting environments with low oxygen levels. This bacterium has been implicated in the production of short-chain fatty acids, which play a crucial role in maintaining the health and balance of the gut microbiome, and research has shown that it can influence the host's immune system and metabolic processes." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium 2_2_44A Positive No 1 Anaerobe Chemoheterotroph Multiple Nonsporulating 457422 ADCZ00000000.1 Bac0003179 Streptomyces pristinaespiralis ATCC 25486 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces pristinaespiralis 457429 NZ_CM000950.1 Bac0003180 Streptomyces filamentosus NRRL 11379 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces filamentosus 457430 ABYX00000000.2 Bac0003181 Natranaerobius thermophilus JW/NM-WN-LF "Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) is a poly-extremophile (halophilic alkalithermophiles), obligately anaerobic Gram-positive bacterium isolated from sediment of alkaline, hypersaline Lake Fazda located in the Wadi An Natrun, Egypt. The halophilic alkalithermophilic bacteria are a novel group of extremophiles that have been recently recognized. They are adapted to grow at a combination of three extreme environmental conditions, elevated temperature, alkaline pH and elevated NaCl concentration, an evolutionarily interesting combination. It is assumed that haloalkalithermophiles combine adaptive mechanisms of halophiles, alkaliphiles and thermophiles. Natranaerobius thermophilus is able to grow in batch culture between 30 and 57 degrees Celsius, with an optimum at 53 degrees Celsius, and utilizes fructose, cellobiose, ribose, sucrose, trehalose, trimethylamine, pyruvate, casamino acids, acetate, xylose, and peptone as carbon and energy sources. Fumarate, thiosulfate, nitrate, and ferric citrate are utilized as electron acceptors. Cells are rod-shaped, non-motile and non-sporeforming. Phylogenetically, N. thermophilus forms a novel lineage within the class Clostridia, and belongs to the novel family Natranaerobiaceae and novel order, NatranaerobialesElucidation of adaptive mechanisms of multi-extremophilic microorganisms will extend the present understanding of the boundaries under which life can exist and will provide excellent models for the study of adaptive mechanisms to extreme environmental conditions. Availability of a genome sequence for a haloalkalithermophile will also contribute to the field of astrobiology and will help in evaluating some of the presently available hypotheses on the origin of life. In addition, sequencing the genome of a multi-extremophile will also impact biotechnology. Haloalkalithermophiles are potential sources of enzymes uniquely adapted to activity at high salt concentrations, pH and high temperatures. These ""extremozymes"" have the additional advantage of being more stable to detergents, organic solvents and chaotropic agents than mesophilic enzymes. (HAMAP: NATTJ)" Bacillati Bacillota Clostridia Natranaerobiales Natranaerobiaceae Natranaerobius Natranaerobius thermophilus JW/NM-WN-LF Positive Rod No 1 1 Obligate anaerobe Thermophilic Specialized Free living Nonsporulating No 457570 NC_010718.1 Bac0003182 Nostoc sp. KVJ20 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. KVJ20 457944 LSSA00000000.1 Bac0003183 Macrococcoides caseolyticum JCSC5402 "Macrococcoides caseolyticum JCSC5402 is a Gram-positive coccus that typically arranges itself in clusters or singles. This organism thrives optimally at a temperature of 35.0°C and is classified as an aerobe, indicating its reliance on oxygen for growth and metabolism. It has been isolated from multiple habitats, suggesting a degree of environmental versatility. ↵↵The coccoid morphology of M. caseolyticum JCSC5402 implies a potential role in various biological processes, particularly in its native environments. Its ability to form clusters may facilitate cooperative interactions among cells, which can be advantageous in nutrient acquisition or in responses to environmental stressors. Furthermore, its aerobic nature may allow it to occupy niches where oxygen is readily available, potentially influencing microbial community dynamics in diverse ecosystems.↵↵The adaptability of M. caseolyticum JCSC5402 to different habitats highlights its ecological significance, as organisms of this type may contribute to biogeochemical cycles, particularly in environments where aerobic processes are critical for nutrient turnover. Understanding the specific roles and interactions of this microbe within its ecosystem could provide insights into its potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides caseolyticum Positive Cocci No 1 1 Aerobe 35 Mesophilic Multiple Free living Clusters - Singles 458233 NC_011995.1 Bac0003184 Mycobacterium liflandii 128FXT Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium liflandii 459424 NC_011355.1 Bac0003185 Arthrospira platensis C1 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Sirenicapillariaceae Limnospira Limnospira platensis 459495 AFXD00000000.1 Bac0003186 Fictibacillus solisalsi "Fictibacillus solisalsi is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This microbe demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Fictibacillus solisalsi exhibits optimal growth at a temperature of 37.0°C, which suggests a potential adaptation to warm environments or host-associated niches.↵↵The sporulation capability of Fictibacillus solisalsi may provide it with a significant ecological advantage, enabling survival in fluctuating environmental conditions, such as nutrient scarcity or extreme temperatures. This trait is particularly important for resilience and persistence in diverse habitats. ↵↵Overall, the physiological traits of Fictibacillus solisalsi indicate its versatility and potential ecological roles in various environments. Further studies may reveal its contributions to microbial communities and its interactions with other organisms in its native habitat." Bacillati Bacillota Bacilli Caryophanales Fictibacillaceae Fictibacillus Fictibacillus solisalsi Gram-positive rod facultative aerobe/anaerobe 37 mesophilic spore-forming 459525 FNHW00000000.1 Bac0003187 Flavobacterium anhuiense str. RCM74 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium anhuiense 459526 JUIV00000000.1 Bac0003188 Flavobacterium anhuiense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium anhuiense 459526 FMVC00000000.1 Bac0003189 Methylobacterium nodulans ORS 2060 "In 2001 Methylobacterium, which had been hitherto found associated non-symbiotically with plants, was discovered to nodulate Crotalaria, a large Fabaceae group found in Africa. Strain ORS 2060 (also known as CNCM I 2342T=LMG 21967T), the type strain for this species, was isolated from nodules on C. podocarpa from the Bel-Air area, Dakar, Senegal. It is able to use C1 compounds such as methanol, formate and formaldehyde but not methylamine as its sole carbon source, as well as more complex carbon sources such as succinate, citrate, pyruvate, glutamate and ethanol. It grows as short asporogenous Gram-negative rods that occur singly or occasionally in pairs; some are motile with one or more polar flagella. Optimal growth occurs at pH 6.8-7.5 and at 30-37 degrees C. It is strictly aerobic and unpigmented (adapted from PubMed 15545469 and http://genome.jgi-psf.org/finished_microbes/metno/metno.home.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium nodulans ORS 2060 Negative Rod No 1 2 Aerobe 32 Methylotroph Mesophilic HostAssociated Free living Crotalaria Pairs - Singles Nonsporulating No 460265 NC_011894.1 Bac0003190 Enterocloster lavalensis str. KCTC 15153 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster lavalensis 460384 PYII00000000.1 Bac0003191 Vibrio hangzhouensis "Vibrio hangzhouensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This species thrives optimally at a temperature of approximately 29.0°C, suggesting a preference for moderately warm environments. As a member of the Vibrio genus, V. hangzhouensis is likely to be found in aquatic environments, where it may play a role in nutrient cycling and the breakdown of organic matter.↵↵The Gram-negative nature of V. hangzhouensis indicates that it possesses a characteristic outer membrane that may contribute to its resilience in various environmental conditions. The absence of sporulation suggests that this microbe relies on other survival mechanisms, such as forming biofilms or utilizing nutrient-rich substrates, to withstand environmental stressors. ↵↵The aerobic requirement of V. hangzhouensis implies that it relies on oxygen for its metabolic processes, which may influence its distribution in aquatic ecosystems, particularly in well-oxygenated waters. The optimal growth temperature further points to its potential adaptation to specific ecological niches within these environments.↵↵Overall, the traits of Vibrio hangzhouensis highlight its potential role in the microbial community dynamics of aquatic systems, particularly in processes related to organic matter degradation and nutrient cycling, where temperature and oxygen availability are key factors influencing its activity and distribution." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio hangzhouensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 462991 FNVG00000000.1 Bac0003192 Bordetella flabilis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella flabilis 463014 NZ_CP016173.1 Bac0003193 Bordetella genomosp. 6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 6 463024 NEVV00000000.1 Bac0003194 Rhizobium oryzae str. 1.7048 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Xaviernesmea Xaviernesmea oryzae 464029 MKIP00000000.1 Bac0003195 Micrococcus luteus NCTC 2665 "Micrococcus luteus NCTC 2665 is a gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found on all body sites in various species, including humans, animals, and plants, and is an obligate aerobe. The gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram staining procedure, appearing purple under a microscope. The cocci shape of Micrococcus luteus NCTC 2665 allows it to withstand various environmental stresses. As a mesophile, this microbe grows best in moderate temperatures, typically between 20-45°C, making it well-suited for survival in a wide range of environments.As a chemoheterotroph, Micrococcus luteus NCTC 2665 requires organic compounds for energy and carbon, which it obtains by breaking down complex molecules from its surroundings. This ability allows it to inhabit various body sites, from the skin and mucous membranes of humans and animals to the roots and leaves of plants. The microbe's presence on these sites is typically harmless, but it can become opportunistic under certain conditions. As an obligate aerobe, Micrococcus luteus NCTC 2665 requires oxygen to grow, which is why it is often found in well-oxygenated areas. This microbe has been used as a model organism in various scientific studies, particularly in the field of microbiology and biochemistry, due to its relatively simple structure and ease of cultivation. Micrococcus luteus NCTC 2665 produces yellow pigments, which have been found to have potential applications in the production of food coloring and cosmetics." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus NCTC 2665 Positive Cocci No 1 1 Aerobe 29 Mesophilic Multiple Free living Tetrads Nonsporulating No 465515 NC_012803.1 Bac0003196 Streptomyces sp. Mg1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Mg1 465541 ABJF00000000.1 Bac0003197 Steroidobacter denitrificans str. DSM 18526 "Steroidobacter denitrificans strain DSM 18526 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0 °C. This species is notable for its involvement in the biogeochemical cycling of nitrogen, specifically through denitrification processes. ↵↵The Gram-negative cell wall structure of S. denitrificans is characterized by a thin peptidoglycan layer sandwiched between an inner cytoplasmic membrane and an outer membrane containing lipopolysaccharides, which may influence its interactions with the surrounding environment and other microorganisms. As a rod-shaped organism, it possesses a morphology that is common among many bacteria, potentially allowing for efficient nutrient uptake and motility in various habitats.↵↵While S. denitrificans is non-spore-forming, its metabolic capabilities suggest a resilience to fluctuating environmental conditions, particularly in anaerobic environments where denitrification occurs. The optimal growth temperature of 29.0 °C indicates a preference for mesophilic conditions, which aligns with many soil-dwelling bacteria.↵↵Understanding the traits of Steroidobacter denitrificans str. DSM 18526 contributes to a broader comprehension of microbial roles in nitrogen cycling, particularly in ecosystems where denitrification is crucial for maintaining nitrogen balance and mitigating the impacts of excess nitrogen in the environment. This underscores the significance of such bacteria in sustainable agricultural practices and ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Steroidobacterales Steroidobacteraceae Steroidobacter Steroidobacter denitrificans Gram-negative rod 29 mesophilic non-spore-forming 465721 NZ_CP011971.1 Bac0003198 Erwinia tasmaniensis Et1/99 "The genus Erwinia currently contains both pathogenic and nonpathogenic bacteria. E.tasmaniensis are nonpathogenic Erwinia isolated from fruit trees; strain Et1/99, the type strain, was isolated from apple flowers in Tasmania, Australia. It consists of a 3.9 Mb circular chromosome and five plasmids. Strain Et1/99 represents an epiphytic plant bacterium related to E.amylovora and E.pyrifoliae, which are responsible for the important plant diseases fire blight and Asian pear shoot blight, respectively. Strain Et1/99 is thought to compete with these and other bacteria when occupying the same habitat during initial colonization and may represent a strategy for controlling the early steps of fire blight. Secretion systems include the hypersensitive response type III pathway present in many pathogens. Differences or missing parts within the virulence-related factors distinguish strain Et1/99 from pathogens such as Pectobacterium atrosepticum and the related Erwinia spp. Strain Et1/99 completely lacks the sorbitol operon, which may also affect its inability to invade fire blight host plants. Erwinia amylovora in contrast depends for virulence on utilization of sorbitol, the dominant carbohydrate in rosaceous plants (modified from PubMed 18462403). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia tasmaniensis Et1/99 Negative Rod No 1 2 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating No 465817 NC_010696.1 Bac0003199 Pannonibacter indicus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Pannonibacter Pannonibacter indicus 466044 CYHE00000000.1 Bac0003200 Rhodobacteraceae bacterium KLH11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium KLH11 467661 ACCW00000000.1 Bac0003201 Streptococcus gordonii str. Challis substr. CH1 "Streptococcus gordonii str. Challis substr. CH1 is a Gram-positive, spherical-shaped bacterium that thrives at mesophilic temperatures, is classified as a chemoheterotroph, and is often found in the oral cavity and gastrointestinal tracts of various mammalian species.As a Gram-positive organism, S. gordonii exhibits a thick peptidoglycan layer, which retains the crystal violet stain during the Gram staining process, giving it a purple color under a microscope. This characteristic not only aids in identification but also contributes to its virulence factors and the ability to adhere to surfaces in the host environment. Its coccoid shape allows this microbe to form chains or clusters, a behavior typical of streptococci, which facilitates its pathogenicity by aiding in colonization. S. gordonii is a chemoheterotroph, meaning it relies on organic compounds for both energy and carbon. This metabolic flexibility enables it to thrive in the complex environment of the oral cavity, where it competes with other microorganisms for nutrients. Its mesophilic temperature preference, typically between 30°C and 37°C, aligns well with the human body temperature, making it well-suited for colonization in the mouth and gut. As a facultative anaerobe, S. gordonii can grow in both the presence and absence of oxygen. This adaptability allows it to thrive in various niches within the oral cavity, including periodontal pockets and dental biofilms, contributing to its role in dental plaque formation and oral health issues. Moreover, S. gordonii is recognized for its production of glucosyltransferases that aid in the synthesis of glucans from sucrose, which play a crucial role in biofilm formation. Its presence has been linked to both beneficial and detrimental outcomes in oral health, showing its dual role as a commensal and potential pathogen in conditions such as endocarditis and dental caries." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii Challis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 467705 NC_009785.1 Bac0003202 Mucilaginibacter oryzae str. DSM 19975 "Mucilaginibacter oryzae str. DSM 19975 is a Gram-negative, rod-shaped bacterium that is non-spore-forming and exhibits an aerobic mode of metabolism. With an optimal growth temperature of 29.0°C, this microbe thrives in moderate environmental conditions, suggesting a preference for habitats that do not exceed this temperature. ↵↵As a member of the genus Mucilaginibacter, it is expected to play a role in organic matter decomposition within its ecological niche. The Gram-negative cell wall structure may contribute to its resilience in diverse environments, potentially influencing its interactions with other microorganisms and its ability to utilize various substrates. ↵↵The aerobic nature of Mucilaginibacter oryzae indicates that it requires oxygen for growth, which further suggests its presence in oxygen-rich environments, such as soil or water bodies, where it may participate in biogeochemical cycles. Its characteristics imply that it could be involved in nutrient cycling processes or contribute to the microbial community dynamics within its habitat. Overall, Mucilaginibacter oryzae str. DSM 19975 exemplifies the complex interplay of microbial life and its adaptation to specific environmental conditions." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter oryzae Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 468058 QGHA00000000.1 Bac0003203 Liquorilactobacillus hordei Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus hordei 468911 NZ_CP018178.1 Bac0003204 Halogeometricum borinquense DSM 11551 "Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) is an aerobic, extremely halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto-Rico. The cells are highly pleomorphic (short and long rods, squares, triangles and ovals) and motile by peritrichous flagella. Gas vesicles are present and are responsible for modifying the color of colonies or cell suspensions from red to pink. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. At least 8% NaCl (w/v) is required for growth, reflecting the primary characteristic requirement for high salt concentrations of the Halobacteriaceae. The optimal NaCl concentration range is 20-25NaCl (w/v) at 40 degrees Celsius. The temperature range for growth is between 22 and 50 degrees Celsius, with an optimum at 40 degrees Celsius. Nitrate is reduced to nitrite with the production of gas. (Adapted from PMID 21304651). (HAMAP: HALBP)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogeometricum Halogeometricum borinquense DSM 11551 Negative No 1 1 Aerobic 40 Mesophilic Specialized Free living Singles Nonsporulating No 469382 NC_014731.1 Bac0003205 Delftia sp. JD2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia sp. JD2 469553 LFJT00000000.1 Bac0003206 Bacteroides sp. 2_2_4 "Bacteroides sp. 2_2_4 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic environments, exhibiting a temperature preference typically ranging from 30°C to 37°C. As a heterotroph, it derives its energy from organic compounds, utilizing complex carbohydrates and other organic substrates that it ferments. This bacterium is classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen and thrives in oxygen-depleted environments. Bacteroides sp. 2_2_4 is widely distributed in the human gastrointestinal tract, where it plays a crucial role in the digestion of polysaccharides and the maintenance of gut health. It also colonizes other body sites, including the oral cavity and the female genital tract, contributing to the complex microbial ecosystems at these locations. The presence of Bacteroides species in these niches contributes to metabolic processes and influences the immune response, showcasing their importance in human health. A defining feature of Bacteroides sp. 2_2_4 is its ability to produce a variety of enzymes that can break down polysaccharides, aiding in the digestion of fibrous foods that humans cannot process efficiently on their own. These enzymes not only facilitate nutrient absorption but also produce short-chain fatty acids, such as butyrate, which are beneficial for colon health and play a role in regulating systemic inflammation. Additionally, Bacteroides sp. 2_2_4 can exhibit strain-specific metabolic capabilities, allowing it to adapt to different substrates in varying environments. This adaptability underpins the bacterium’s significance in both gut health and broader metabolic processes, making it a key player in the human microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 2_2_4 Negative Anaerobe 469590 ABZZ00000000.1 Bac0003207 Parabacteroides sp. 20_3 "Parabacteroides sp. 20_3 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, categorizing it as an obligate anaerobe. This microbe is primarily found in the human gastrointestinal tract, where it plays a significant role in gut health and metabolism. Parabacteroides sp. 20_3 is classified as a chemoheterotroph, utilizing organic compounds for energy and growth, primarily deriving nutrients from complex polysaccharides, proteins, and other organic materials present in the diet. Being an obligate anaerobe means that Parabacteroides sp. 20_3 cannot survive in the presence of oxygen, which necessitates an environment that is oxygen-free, such as the intestines. This adaptation is crucial for its survival and function within the gut microbiome, where it contributes to the fermentation of undigested carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. The rod shape of Parabacteroides sp. 20_3 aids in its mobility and colonization of gut niches, enabling it to penetrate biofilms and interact dynamically with other microbial species. As a Gram-negative organism, it possesses an outer membrane that helps resist certain antibiotics and contributes to its ecological niche within the gut. Furthermore, this microbe is being researched for its potential health benefits, including its role in modulating immune responses and its contributions to metabolic pathways that affect host health, including possible implications in obesity and metabolic syndrome. Its ability to interact with other gut bacteria also underscores its importance in maintaining the delicate balance of the human microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. 20_3 Negative Anaerobe 469591 QSQY00000000.1 Bac0003208 Coprobacillus sp. 8_2_54BFAA Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. 8_2_54BFAA 469597 ACTG00000000.1 Bac0003209 Fusobacterium gonidiaformans 3-1-5R "Fusobacterium gonidiaformans 3-1-5R is a gram-negative, rod-shaped bacterium classified as a mesophile, exhibiting optimal growth at moderate temperatures. This microbe is a chemoheterotroph, deriving energy from organic compounds, and is categorized as an obligate anaerobe, thriving in environments devoid of oxygen. Typically found in the human oral cavity, gastrointestinal tract, and various soft tissues, F. gonidiaformans underscores its ecological versatility and adaptability. As a gram-negative organism, F. gonidiaformans possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which contribute to its virulence and immune evasion strategies. The rod shape enhances its motility and colonization potential, allowing it to establish itself in diverse environments within the host. F. gonidiaformans is known for its role in the complex microbial communities of the oral microbiome, where it coexists with other species while contributing to the unique metabolic activities of this environment. Its chemoheterotrophic nature emphasizes its dependence on organic substrates, which it metabolizes anaerobically, forming various byproducts, including short-chain fatty acids. This metabolic capability plays a significant role in maintaining the ecological balance within the microbiome. The organism has garnered attention for its potential implications in human health, particularly in relation to periodontal diseases and other inflammatory conditions. As an obligate anaerobe, it is particularly interesting how F. gonidiaformans can thrive in low-oxygen environments and yet participate in complex interspecies interactions within biofilms. Understanding its behavior and metabolism could provide insights into microbial pathogenesis and potential therapeutic targets for managing oral and systemic diseases." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans Negative Anaerobe 469605 ACDD00000000.1 Bac0003210 Fusobacterium vincentii 4_1_13 "Fusobacterium vincentii 4_1_13 is a nonsporulating, Gram-negative rod that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is primarily host-associated, indicating a close relationship with host organisms, which may influence its ecological niche and functional roles within microbial communities.↵↵As a member of the genus Fusobacterium, F. vincentii 4_1_13 is likely to be involved in various metabolic processes, particularly in anaerobic conditions, where it can contribute to the degradation of organic materials. Its nonsporulating nature suggests that it relies on stable habitats provided by its hosts for survival and proliferation, rather than enduring adverse environmental conditions through sporulation.↵↵The association of F. vincentii 4_1_13 with hosts could imply potential interactions with other microbial species, possibly affecting overall microbial diversity and function in the host's microbiome. Furthermore, its growth at the optimal temperature of 37.0°C aligns with the physiological temperature of many warm-blooded animals, suggesting that it may play a role in the microbiota of mammals. This raises interesting questions about its potential contributions to host health, disease states, and the dynamics of microbial interactions in the anaerobic niches of host-associated environments. Understanding the specific ecological roles of F. vincentii 4_1_13 could provide insights into the broader implications of Fusobacterium species in health and disease." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium vincentii Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 469606 ACDE00000000.2 Bac0003211 Streptococcus sp. 2_1_36FAA "Streptococcus sp. 2_1_36FAA is a gram-positive, spherical-shaped bacterium that thrives best at mesophilic temperatures, making it well-suited for growth in moderate environments. It is classified as a chemoheterotroph, relying on organic compounds for energy and carbon. This microbe typically inhabits various body sites across multiple species, including the oral cavity, gastrointestinal tract, and respiratory tract. A notable characteristic of Streptococcus sp. 2_1_36FAA is its status as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen. The gram-positive nature of Streptococcus sp. 2_1_36FAA indicates a thick peptidoglycan layer in its cell wall, contributing to its stability and ability to retain the crystal violet stain during gram staining procedures. This structural feature enhances its resilience in varying environments. As a cocci, this bacterium can exist in chains or pairs, a typical arrangement within the Streptococcus genus that aids in its identification. Being mesophilic, Streptococcus sp. 2_1_36FAA is most active in temperatures ranging from 20°C to 45°C, which aligns with human body temperatures, allowing it to proliferate in various human body sites. As a chemoheterotroph, this microbe requires organic substrates for both energy and growth, playing a significant role in the decomposition of organic material in its environment and influencing the microbial dynamics within its habitats. Notably, some strains of Streptococcus have been implicated in various human diseases, ranging from mild throat infections to more severe conditions like rheumatic fever. However, this particular strain, Streptococcus sp. 2_1_36FAA, is still under study for its potential benefits in probiotic applications, highlighting its dual nature as both a contributor to health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. 2_1_36FAA Positive Cocci Facultative anaerobe 469609 ACOI00000000.2 Bac0003212 Fusobacterium mortiferum ATCC 9817 "Fusobacterium mortiferum ATCC 9817 is a Gram-negative, rod-shaped bacterium classified as a chemoheterotroph, with a preference for an anaerobic environment, specifically as an obligate anaerobe. This microbe thrives in environments devoid of oxygen, making it particularly notable for its association with human tissues, predominantly found in the gastrointestinal tract, oral cavity, and occasionally in deeper tissues during infections. As a Gram-negative organism, F. mortiferum possesses a thin peptidoglycan layer and an outer membrane rich in lipopolysaccharides, which contribute to its pathogenic potential and resistance to certain antibiotics. Its rod shape, or bacillus structure, facilitates motility and colonization within various tissues.F. mortiferum is typically found in anaerobic conditions, such as within abscesses or infected wounds, where oxygen levels are low. Its role as a chemoheterotroph implies that it derives energy and carbon from organic compounds, often leading to its involvement in complex biofilms, especially in the oral cavity. This characteristic is particularly relevant in understanding its implications in periodontal diseases and other infections, where it can aggregate with other bacteria in the mouth. Research has highlighted that F. mortiferum can produce virulence factors, including toxins and enzymes, which contribute to its pathogenicity. This microbe is not only of clinical importance due to its association with various infections, but it also plays a role in the complex microbial ecosystems within the human body. Its presence in the gut microbiome suggests potential influences on human health, emphasizing the delicate balance between commensal and pathogenic relationships of bacteria within our microbiota." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum Negative Anaerobe 469616 ACDB00000000.2 Bac0003213 Brucella suis ATCC 23445 "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucellosis is a major infectious disease for both human and animals. Several Brucella species (B.abortus, B.melitensis and B.suis) have been isolated from many different animals. All three Brucella species cause a severe human disease characterized in its acute phase by undulant fever and in its chronic phase by damage of different organs. When the infection is localized to the brain or the heart, it can result in a fatal meningitidis or fatal endocarditis, respectively. Brucellosis is a major problem in the Mediterranean region and parts of Asia, Africa and Latin America. Brucella suis was the first pathogenic organism weaponized by the U.S. military during the 1950s. Although Brucellae contain a large set of flagellar genes, they display a species-specific gene inactivation and consequently are nonmotile. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella suis ATCC 23445 Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Chains - Singles Nonsporulating Yes 470137 NC_010169.1 Bac0003214 Coprococcus comes ATCC 27758 "Coprococcus comes ATCC 27758 is a Gram-positive, oval-shaped, anaerobic bacterium that thrives at moderate temperatures, categorized as a mesophile. As a chemoheterotroph, it derives energy from organic compounds while requiring them for carbon as well. This microbe is predominantly found in the human gastrointestinal tract, particularly in the colon, and may be associated with the microbiota of other mammals. Being Gram-positive, Coprococcus comes exhibits a thick peptidoglycan layer in its cell wall, which is responsible for its characteristic staining properties. This structural component also plays a role in its defense mechanisms against environmental stresses. The oval shape of this bacterium contributes to its ability to aggregate with other microbial species, forming complex communities essential for gut health. As a mesophile, C. comes thrives optimally at temperatures ranging from 30 to 37 degrees Celsius, mirroring the internal environment of the human body. Its classification as a chemoheterotroph highlights its metabolic dependence on organic substrates, which are generally derived from the breakdown of dietary fibers and other carbohydrates within the gut. This metabolic versatility allows it to flourish in various conditions while promoting a balanced gut microbiome. C. comes also has a significant role in the fermentation of dietary fibers, producing short-chain fatty acids that are beneficial for colon health and provide energy sources for colonocytes. Moreover, there is emerging research indicating that C. comes may influence immune responses and contribute to the maintenance of a healthy gut barrier. As a member of the gut microbiota, it underscores the intricate relationships between microorganisms and host health, revealing its potential implications for metabolic and immune-related disorders." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Allocoprococcus Allocoprococcus comes Positive Cocci Anaerobe 470146 ABVR00000000.1 Bac0003215 Moraxella pluranimalium "Moraxella pluranimalium is a Gram-negative, non-spore-forming bacterium characterized by its spherical shape and aerobic metabolic requirements. This microbe thrives optimally at a temperature of 29.0°C, indicating a potential preference for environments that are moderately warm, which may align with specific ecological niches where it can be found. ↵↵As a member of the Moraxellaceae family, M. pluranimalium's Gram-negative status suggests a complex cell wall structure composed of a thin peptidoglycan layer and an outer membrane rich in lipopolysaccharides, which may influence its interactions with other microorganisms and its resilience to environmental stresses. The lack of sporulation indicates that M. pluranimalium relies on other survival strategies in adverse conditions, which may include metabolic versatility or the ability to form biofilms.↵↵Given its aerobic nature, M. pluranimalium requires molecular oxygen for growth, which may restrict its habitat to oxygen-rich environments. This trait could also affect its ecological interactions, particularly in microbial communities where oxygen levels fluctuate. The optimal growth temperature suggests that M. pluranimalium may play a role in the microbiomes of warm-blooded animals or in specific environmental niches that maintain such thermal conditions. ↵↵Understanding the physiological traits of M. pluranimalium provides insight into its potential roles in microbial ecology and highlights the importance of temperature and oxygen in shaping microbial distributions and community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella pluranimalium Gram-negative sphere aerobic 29 mesophilic non-spore-forming 470453 MUYU00000000.1 Bac0003216 Chlamydia trachomatis 434/Bu "Chlamydia trachomatis 434/Bu is a gram-negative, pleomorphic bacterium that typically appears as a spherical or oval-shaped organism. This microbe thrives at a mesophilic temperature range, ideally between 30-37°C, making it well-suited for growth in the human body. As a heterotroph, C. trachomatis relies on organic compounds for its metabolic energy, underscoring its parasitic nature. It is classified as an obligate intracellular pathogen, which means it can only replicate within the host's cells, predominantly affecting the epithelial cells of the urogenital tract, but can also be found in other body sites such as the conjunctiva and the rectum. The unique morphology of C. trachomatis is marked by its biphasic developmental cycle, consisting of elementary bodies (EB) and reticulate bodies (RB). The EB is the infectious form that enters host cells, while the RB is involved in growth and replication within the host cytoplasm. This versatility allows the bacterium to evade the immune response and establish persistent infections, which can lead to conditions such as chlamydial cervicitis, pelvic inflammatory disease, and even infertility in women if left untreated. C. trachomatis is one of the most common sexually transmitted infections globally, often asymptomatic, particularly in women. The prevalence of this pathogen is concerning, as it can also lead to complications such as ectopic pregnancies and chronic pelvic pain. Furthermore, it has been associated with an increased risk of HIV transmission. The ability of C. trachomatis to persist without causing immediate symptoms highlights the importance of regular screening and education in preventing its spread." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis 434/Bu Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic Homo sapiens Yes 471472 NC_010287.1 Bac0003217 Alicyclobacillus ferrooxydans str. TC-34 "Alicyclobacillus ferrooxydans strain TC-34 is a Gram-positive, ovoid-shaped bacterium that exhibits the ability to form spores and thrives in aerobic conditions. This thermophilic organism has an optimal growth temperature of 29.0 °C, indicating its preference for moderately warm environments. ↵↵As a spore-forming microbe, A. ferrooxydans TC-34 has developed strategies for survival in fluctuating environmental conditions, which may include desiccation and nutrient scarcity. The ability to produce spores is a significant trait that allows this strain to endure adverse conditions, thereby contributing to its resilience in diverse habitats.↵↵The aerobic nature of this bacterium suggests that it plays a role in oxygen-rich environments, potentially participating in biogeochemical cycles, particularly in relation to iron oxidation processes. Given its specific growth conditions and metabolic capabilities, A. ferrooxydans TC-34 may be involved in the transformation of iron compounds and could contribute to the biogeochemical cycling of iron in its natural habitats. Furthermore, its ability to thrive at a moderate temperature may suggest ecological niches where it interacts with other microorganisms, influencing microbial community dynamics and nutrient availability." Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Paenalicyclobacillus Paenalicyclobacillus ferrooxydans Gram-positive ovoid non-motile aerobic 29 mesophilic spore-forming 471514 LJCO00000000.1 Bac0003218 Beutenbergia cavernae DSM 12333 "Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) is an aerobic to microaerophilic Gram-positive bacterium isolated from cave soil in Guangxi, China. It is non-motile and non-spores forming. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Micrococcales Beutenbergiaceae Beutenbergia Beutenbergia cavernae DSM 12333 Positive Rod No 1 1 Aerobe 29 Mesophilic Terrestrial Free living Chains - Clusters - Singles Nonsporulating No 471853 NC_012669.1 Bac0003219 Dyadobacter fermentans DSM 18053 "Dyadobacter fermentans DSM 18053 is a Gram-negative, rod-shaped bacterium that thrives optimally in mesophilic temperature ranges. Classified as a heterotroph, it primarily derives its energy from organic compounds. This microbe is particularly notable for its role in a variety of environments, including soil, freshwater, and as a component of the microbiota in the gastrointestinal tracts of several organisms. As a facultative anaerobe, D. fermentans can grow in both the presence and absence of oxygen, which allows it to adapt to diverse ecological niches. The Gram-negative nature of D. fermentans is characterized by its thin peptidoglycan layer and outer membrane, which contains lipopolysaccharides, contributing to its virulence and interaction with host organisms. Its rod shape aids in mobility and colonization capabilities. The mesophilic temperature preference indicates its ability to grow within moderate temperature ranges, making it suitable for various habitats, mainly those with organic matter decomposition. As a heterotroph, D. fermentans utilizes organic substrates, playing a vital role in carbon cycling and nutrient recycling within ecosystems. This metabolic versatility allows it to thrive in numerous environments. The facultative anaerobic nature means that it can switch between aerobic respiration when oxygen is available and fermentation or anaerobic respiration when it is not, enhancing its survival in diverse conditions. Dyadobacter fermentans has garnered attention for its potential biotechnological applications, particularly in wastewater treatment and bioremediation processes. Its ability to degrade complex organic compounds suggests a valuable role in environmental management and sustainability efforts. Furthermore, studies on D. fermentans can provide insights into microbial interactions within ecosystems and their implications for nutrient cycling and ecological balance." Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter fermentans DSM 18053 Negative Rod No 1 2 Aerobe Chemoorganoheterotroph Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating No 471854 NC_013037.1 Bac0003220 Jonesia denitrificans DSM 20603 "Jonesia denitrificans CIP 55134 was isolated from boiled ox blood in about 1948. It is a Gram-positive nonspore-forming, motile rod that is catalase positive, oxidase negative, and facultatively anaerobic. It grows as irregular, nonsporing rods (0.3 by 0.5 um) showing branched Y- and clublike forms, although filamentous and coccoid cells may occur in older cultures. Its major menaquinone is MK-9 (adapted from Int. J. Syst. Bacteriol. (1987), 37:266). (HAMAP: JONDD)" Bacillati Actinomycetota Actinomycetes Micrococcales Jonesiaceae Jonesia Jonesia denitrificans DSM 20603 Positive Rod No 1 Facultative 37 Chemoorganoheterotroph Mesophilic HostAssociated Free living Ox Nonsporulating No 471856 NC_013174.1 Bac0003221 Bacteroides intestinalis DSM 17393 "Bacteroides intestinalis DSM 17393 is a gram-negative, rod-shaped bacterium that thrives in the human gut, operating as a strict anaerobe. It belongs to the family Bacteroidaceae and exhibits heterotrophic behavior, deriving energy from organic compounds. This microbe optimally grows at a mesophilic temperature range, typically between 30-37°C, making it well-suited for the warm environment of the intestines. As a member of the gut microbiota, Bacteroides intestinalis plays a crucial role in the digestion of complex carbohydrates and the fermentation of dietary fibers, contributing to the host’s metabolic processes. Its unique morphology, characterized by straight or slightly curved rods, facilitates its survival in the nutrient-rich colonic environment, where it can rapidly multiply. The anaerobic nature of Bacteroides intestinalis underscores its adaptation to the intestinal ecosystem, as it can thrive in the absence of oxygen while also engaging in interactions with other microbial species. Beyond its ecological role in the gut, Bacteroides intestinalis has garnered attention for its potential in biotechnological applications, including its ability to produce enzymes that can break down polysaccharides. Research has shown that this microbe may influence host immunity and metabolism, suggesting a broader significance in maintaining gut health and preventing disorders such as obesity or inflammatory bowel disease.Furthermore, studies indicate that Bacteroides intestinalis may interact with the gut-brain axis, influencing neurotransmitter production and potentially impacting mood and behavior. This highlights the need for further exploration of its functions and its implications for human health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis Negative Anaerobe 471870 ABJL00000000.2 Bac0003222 Proteus penneri ATCC 35198 "Proteus penneri ATCC 35198 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, categorized as a facultative anaerobe. This microbe is typically found in various body sites across different species, notably within the gastrointestinal tracts of humans and animals, as well as in urinary tracts and wounds. Being a member of the Enterobacteriaceae family, it shares the common trait of being able to switch between aerobic and anaerobic respiration, allowing it to adapt to varying environmental conditions. As a Gram-negative organism, the cell wall structure of P. penneri consists of a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This configuration contributes to its pathogenic potential, as it can evade the immune response and resist certain antibiotics. The rod-like shape facilitates mobility, enhanced by flagella that allow the microbe to navigate through viscous environments, such as mucus in the intestines or urinary tracts. P. penneri is classified as a chemoheterotroph, meaning it obtains its energy and carbon from organic compounds. This metabolic flexibility not only supports its growth in nutrient-rich environments but also allows it to contribute to various biochemical processes, including ammonia production during amino acid degradation. The presence of urease enables P. penneri to hydrolyze urea, which can contribute to urinary tract infections. In addition to its clinical significance, P. penneri is also involved in microbial ecology, playing a role in the gut microbiota of humans and animals, where it can influence digestion and nutrient absorption. Understanding this organism's behavior and characteristics is vital given its potential impact on human health, particularly in nosocomial infections and antibiotic resistance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus penneri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 471881 ABVP00000000.1 Bac0003223 Halopseudomonas sabulinigri Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas sabulinigri 472181 NZ_LT629763.1 Bac0003224 Xanthomonas citri pv. vignicola str. CFBP7111 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 473426 NZ_CP022265.1 Bac0003225 Hydrogenoanaerobacterium saccharovorans "Hydrogenoanaerobacterium saccharovorans is a Gram-positive, nonsporulating bacillus that exhibits fermentative and hydrogenogenic metabolism, making it a unique player in anaerobic microbial ecosystems. This organism is classified as a chemoheterotroph, utilizing organic compounds as its energy source. It thrives in diverse habitats, particularly in environments rich in organic matter, such as sediments, digestive systems of herbivores, and anaerobic biodegradation sites. As an anaerobic microbe, H. saccharovorans contributes significantly to the fermentation processes within its niche, facilitating the conversion of carbohydrates into hydrogen gas and organic acids. This capability not only aids in the breakdown of complex organic materials but also plays a crucial role in biogeochemical cycles, particularly in carbon cycling. The hydrogen produced can be utilized by other anaerobic microorganisms, including methanogens, creating a symbiotic relationship that enhances the efficiency of energy recovery from organic waste. The ecological significance of Hydrogenoanaerobacterium saccharovorans extends to its potential applications in biotechnological processes. Its ability to produce hydrogen, a clean energy carrier, positions it as a candidate for biohydrogen production, especially in the context of renewable energy strategies. This highlights the importance of understanding and harnessing specialized microbes like H. saccharovorans in sustainable energy and waste management systems." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Hydrogenoanaerobacterium Hydrogenoanaerobacterium saccharovorans Positive Rod No 1 Anaerobic 37 Chemoheterotroph mesophilic Multiple Nonsporulating 474960 FOCG00000000.1 Bac0003226 Chryseobacterium phosphatilyticum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium phosphatilyticum 475075 PPED00000000.2 Bac0003227 Roseovarius aestuarii "Roseovarius aestuarii is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This microbe belongs to the genus Roseovarius, which is known for its association with marine environments. R. aestuarii's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence its interactions within aquatic ecosystems.↵↵As an aerobic organism, R. aestuarii requires oxygen for growth, which suggests a potential role in biogeochemical cycles, particularly in oxygen-rich environments. The presence of this bacterium in estuarine habitats may indicate its involvement in the degradation of organic matter or nutrient cycling processes, contributing to the overall health of these ecosystems.↵↵Moreover, the rod shape of R. aestuarii could provide advantages in motility and nutrient acquisition in the complex environments where it resides. Understanding the ecological roles of such bacteria may shed light on their contributions to microbial diversity and function in marine systems, particularly in balancing nutrient dynamics and supporting various trophic levels." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius aestuarii Gram-negative rod aerobic 475083 FWXB00000000.1 Bac0003228 Pedobacter nyackensis "Pedobacter nyackensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is non-spore-forming. Its optimal growth temperature is around 16.0 °C, indicating a preference for cooler environments, which may reflect its adaptation to specific ecological niches. ↵↵As a member of the genus Pedobacter, this microbe is likely to possess traits that confer resilience in various habitats, potentially including soil and freshwater environments. The Gram-negative nature of Pedobacter nyackensis suggests that it possesses a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence its interactions with the surrounding environment. ↵↵The aerobic requirement indicates that Pedobacter nyackensis relies on oxygen for its metabolic processes, which may position it within ecosystems where oxygen availability is sufficient, such as in well-aerated soils or water bodies. The absence of sporulation suggests that this bacterium may be less resilient to extreme conditions compared to spore-forming bacteria, potentially limiting its survival during environmental disturbances.↵↵Overall, the traits of Pedobacter nyackensis underscore its role in environments where cooler temperatures prevail and oxygen is accessible, highlighting its potential contributions to nutrient cycling and microbial diversity in these ecosystems. Further research could elucidate its specific interactions within these microbial communities and its broader ecological functions." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter nyackensis Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 475255 FWYB00000000.1 Bac0003229 Algoriphagus aquaeductus str. T4 "Algoriphagus aquaeductus strain T4 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments at an optimal temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth mechanisms for survival and reproduction under favorable conditions. ↵↵The Gram-negative cell wall structure of Algoriphagus aquaeductus str. T4 indicates the presence of an outer membrane, which may confer certain advantages in terms of environmental adaptability and resistance to antimicrobial agents. The rod shape of this bacterium is typical of many members within its genus and may play a role in its motility and nutrient uptake in aquatic habitats.↵↵Given its optimal growth temperature, Algoriphagus aquaeductus str. T4 is likely well-suited to moderate aquatic environments, potentially contributing to biogeochemical processes within these ecosystems. The preference for aerobic conditions hints at its involvement in the degradation of organic matter in oxygen-rich waters, which is crucial for nutrient cycling. Understanding the specific metabolic pathways employed by this organism could provide insights into its ecological role and potential applications in bioremediation or biotechnology." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus aquaeductus Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 475299 QKTX00000000.1 Bac0003230 Halomonas beimenensis str. NTU-111 "Halomonas beimenensis strain NTU-111 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival under various environmental conditions. The traits of H. beimenensis suggest its potential adaptability to diverse habitats, particularly those that are saline, given the genus Halomonas is known for its halophilic characteristics. ↵↵This strain's preference for aerobic metabolism indicates a reliance on oxygen for energy production, which may influence its ecological role in biogeochemical cycles, especially in environments where oxygen levels fluctuate. The ability to thrive at an optimal temperature of 37.0°C positions H. beimenensis within a range that is commonly associated with mesophilic organisms, potentially allowing it to inhabit areas influenced by warm aquatic systems. ↵↵Overall, Halomonas beimenensis str. NTU-111 exemplifies the diverse metabolic capabilities found within the Halomonas genus, suggesting its ecological significance in nutrient cycling, particularly in saline and temperate aquatic ecosystems. Further exploration of its metabolic pathways may reveal insights into its roles in bioremediation or nutrient utilization in such environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas beimenensis Gram-negative rod aerobic 37 mesophilic non-spore-forming 475662 NZ_CP021435.1 Bac0003231 Blautia hydrogenotrophica DSM 10507 "Blautia hydrogenotrophica DSM 10507 is a Gram-positive, coccoid-shaped bacterium, classified as a mesophile and a chemoheterotroph, which thrives in anaerobic conditions as an obligate anaerobe. It is part of the human gut microbiota and is predominantly found in the intestines, where it plays a crucial role in the fermentation of dietary fibers and the production of short-chain fatty acids essential for gut health. As a Gram-positive organism, Blautia hydrogenotrophica possesses a thick peptidoglycan layer in its cell wall, contributing to its stability in various environments, particularly within the highly dynamic and nutrient-rich gastrointestinal tract. Its coccoid shape aids in maximizing surface area for nutrient absorption while facilitating interaction with other microbial species within the complex gut ecosystem. Being a mesophile, Blautia hydrogenotrophica exhibits optimal growth at moderate temperatures, typically around 37°C, which aligns with the average internal temperature of the human body. Its classification as a chemoheterotroph means that it derives its energy from organic compounds, effectively breaking down carbohydrates, proteins, and lipids from the host's diet, making it a vital contributor to nutrient metabolism and energy recovery within the gut. This microbe has garnered attention for its potential health benefits, including the regulation of inflammation and the modulation of the immune system. It is known to produce hydrogen gas as a byproduct of its metabolic processes, which can influence the overall microbial community structure in the intestines. Researchers are exploring the implications of Blautia hydrogenotrophica in relation to gut health, obesity, and metabolic disorders, underscoring its relevance in human health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia hydrogenotrophica Positive Anaerobe 476272 ACBZ00000000.1 Bac0003232 Bradyrhizobium japonicum SEMIA 5079 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium japonicum 476282 NZ_CP007569.1 Bac0003233 Desulfosporosinus acididurans str. M1 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus acididurans anaerobic 476652 LDZY00000000.1 Bac0003234 Achromobacter arsenitoxydans SY8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter arsenitoxydans 477184 AGUF00000000.1 Bac0003235 Agrobacterium sp. LY4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. LY4 477195 ASYA00000000.1 Bac0003236 Pseudomonas stutzeri TS44 "Pseudomonas stutzeri TS44 is a Gram-negative, rod-shaped bacterium that exists as individual cells. This microorganism is classified as a heterotroph, indicating that it derives its energy from organic compounds. Pseudomonas stutzeri TS44 occupies a host-associated habitat, which suggests a potential association with specific hosts or environments that provide the necessary nutrients for its survival and growth. As an aerobe, this species requires oxygen for its metabolic processes, which may influence its ecological niches and interactions within host environments.↵↵The unique combination of traits exhibited by Pseudomonas stutzeri TS44 highlights its adaptability to diverse ecological settings, particularly in host-associated environments. The organism's reliance on organic substrates for energy and its aerobic metabolism may allow it to play a significant role in biogeochemical cycles within its habitat, potentially influencing nutrient dynamics and microbial community structures. Understanding the ecological roles of such microbes is crucial for comprehending their contributions to ecosystem functions and their interactions with other microbial inhabitants." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 477228 AJXE00000000.1 Bac0003237 Streptomyces cyaneogriseus subsp. noncyanogenus str. NMWT 1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cyaneogriseus 477245 NZ_CP010849.1 Bac0003238 Modestobacter marinus str. BC501 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Modestobacter Modestobacter italicus 477641 NC_017955.1 Bac0003239 Halobacterium salinarum R1 "Aerobic halophilic chemoorganotroph growing on the degradation products of less halophilic organisms as the salinity reaches near saturation. Halobacterium species have adapted to optimal growth under conditions of extremely high salinity (10 times that of sea water).Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) has 1 chromosome and 4 megaplasmids. The chromosome has a very high GC content of 68 % whereas the plasmids have a lower GC content of 58.8 %. The genome contains 2878 protein-coding genes, 68 % of which have been identified by proteomics. The chromosome contains a 60-kb insertion with plasmid-like characteristics such a reduced GC content of 56% and a reduced proteomic protein identification rate. The plasmid pHS3 codes for a number of essential proteins most of them in, or adjacent to, a 67-kb region with chromosome-like features. Thus, it may be considered a second chromosome rather than a plasmid. The three other plasmids pHS1, pHS2 and pHS4 are related to each other through their large-scale duplications. The chromosome of strain R1 is completely collinear and virtually identical to that of strain NRC-1. Besides differences due to insertion elements, there are only 12 other differences: four point mutations, five frameshifts and three insertion/deletion events. Between strain R1 and strain NRC-1 it is possible to match more than 350 kb of plasmid sequence that are virtually identical at the DNA sequence level. This is contrasted sharply by a highly different overall plasmid architecture: the number of plasmids is different, the patterns of the large-scale duplications are highly dissimilar in the two strains, the regions of colinearity are short and all colinearity breakpoints are associated with insertion elements. These differences in plasmid architecture may reflect biological variations among the strains. Alternatively, the excessive duplication may have resulted in sequence assembly errors. Despite the near identity of the DNA sequences of strains R1 and NRC-1, major differences in the protein-coding set have been found. There are 111 CDS that have not been annotated for strain NRC-1. A total of 2375 CDS map to each other in the two strains, among which 475 differ, mainly because of alternative start codon selection. This illustrates the difficulty of a correct ORF prediction in GC-rich genomes.Based on several lines of evidence, it appears that strains R1 and NRC-1 do not represent independent strains but very probably originate from the same cultivation event of a natural isolate. In this view, the differences between the two strains originate from evolution in the laboratory. (HAMAP: HALS3)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum R1 Negative Rod No 1 1 Anaerobe 50 Chemoorganotroph Thermophilic Specialized Free living Nonsporulating No 478009 NC_010364.1 Bac0003240 Microterricola pindariensis str. PON 10 "Microterricola pindariensis str. PON 10 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolic activity and is characterized by its non-spore-forming nature. This organism thrives optimally at a temperature of 25.0 °C, suggesting a preference for moderate environmental conditions. ↵↵The Gram-positive nature of M. pindariensis str. PON 10 indicates a thick peptidoglycan layer in its cell wall, which is a common feature among this group of bacteria, potentially influencing its resilience in various environments. Its rod shape may contribute to its motility and ability to colonize specific niches, although further studies are required to clarify its ecological roles.↵↵As an aerobic organism, M. pindariensis str. PON 10 relies on oxygen for its metabolic processes, which may limit its habitat to well-aerated environments. This trait suggests that it may play a role in the degradation of organic matter in soils or other aerobic environments, contributing to nutrient cycling and ecosystem health. The defined temperature range for optimal growth may also reflect its adaptation to specific ecological settings, indicating that this microbe could be a valuable component in studies of microbial diversity and function in temperate ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microterricola Microterricola pindariensis Gram-positive rod aerobic 25 mesophilic non-spore-forming 478010 MPZN00000000.1 Bac0003241 Neolewinella agarilytica Pseudomonadati Bacteroidota Saprospiria Saprospirales Lewinellaceae Neolewinella Neolewinella agarilytica 478744 FOFB00000000.1 Bac0003242 Kytococcus sedentarius DSM 20547 "Kytococcus sedentarius DSM 20547 is a gram-positive, coccoid-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found on all body sites in various species, including humans, animals, and insects, and is an obligate aerobe. The gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram staining procedure, appearing purple under a microscope. The coccoid shape of Kytococcus sedentarius DSM 20547 allows it to thrive in various environments, as this shape provides a large surface area for nutrient uptake and interaction with its surroundings. As a mesophile, this microbe prefers moderate temperatures, typically between 20-45°C, which is ideal for its growth and metabolic processes.As a chemoheterotroph, Kytococcus sedentarius DSM 20547 relies on organic compounds for energy and carbon, obtaining these nutrients by breaking down complex molecules into simpler ones. This ability allows the microbe to inhabit various body sites, including skin, mucous membranes, and gastrointestinal tracts, where it can feed on available organic matter. The obligate aerobe nature of Kytococcus sedentarius DSM 20547 means that it requires oxygen to grow and survive, which is essential for its energy-producing metabolic pathways. Kytococcus sedentarius DSM 20547 has been found to produce pigments, and its unique characteristics make it a subject of study in the field of microbiology, particularly in the context of its potential applications in biotechnology and environmental science, where its ability to break down complex organic matter can be harnessed for bioremediation purposes." Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus sedentarius DSM 20547 Positive Cocci No 1 1 Aerobe 29 Mesophilic Marine - Skin microflora Free living Tetrads Nonsporulating Yes 478801 NC_013169.1 Bac0003243 Brevibacterium ravenspurgense "Brevibacterium ravenspurgense is a Gram-positive, rod-shaped bacterium that thrives in moderate temperatures, classified as a mesophile. This bacterium is a heterotroph, relying on organic compounds for nutrition, and is facultatively anaerobic, allowing it to grow in both the presence and absence of oxygen. Generally, this microbe is found in diverse environments, including soil, skin, and various human-associated body sites, particularly in areas with high bacterial diversity such as the gastrointestinal tract. The Gram-positive nature of Brevibacterium ravenspurgense signifies its thick peptidoglycan cell wall, which imparts a purple hue during the Gram-staining process. Its rod shape contributes to its adaptability in various ecological niches. As a mesophile, it typically thrives at moderate temperatures, favoring conditions that are conducive to metabolic processes essential for growth and reproduction. Being a heterotroph, Brevibacterium ravenspurgense obtains energy by decomposing organic material, which is critical for nutrient cycling in its habitats. This metabolic versatility allows it to inhabit various ecological niches, including those associated with human health. Its facultative anaerobic lifestyle enables it to survive in both oxygen-rich and low-oxygen environments, enhancing its survival and colonization capabilities. This microbe is noteworthy for its role in cheese production, contributing to the distinctive flavors and characteristics of certain artisanal cheeses. Moreover, Brevibacterium ravenspurgense has been studied for potential biotechnological applications, including its use in bioremediation processes and as a probiotic in food products, underscoring its significance beyond mere microbiological interest." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium ravenspurgense Gram-positive Rod No 1 microaerophile 32 Chemoheterotroph Mesophilic Host epidermis Nonsporulating 479117 LQQC00000000.1 Bac0003244 Catenulispora acidiphila DSM 44928 "Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) is an aerobic, free-living, nonmotile, acidophilic Gram-positive bacterium, originally isolated from forest soil in Gerenzano, Italy. Optimum temperature for growth is 22-28 degrees Celsius and the pH for growth ranges from 4.3 to 6.8 with an optimum pH level 6.0 but scant growth is reported up to pH 7.5. C. acidiphilia grows in long filaments of relatively short aerial hyphae which septate in chains of cylindrical arthrospores when sporulation is induced. It is resistant to lysozyme (at least 100ug/ml) which is not reported for any of the strains of the genus Catenulispora. C. acidiphilia is able to hydrolyze starch and casein, liquefy gelatin, and to utilize D-galactose, D-fructose, arabinose, xylose and gluconate but not glycerol, L-arabinose, D-mannitol, methyl-beta-D-xylopyranoside, methyl-alpaha-D-glucopyranoside, cellulose or sucrose (Adapted from PMID 21304647). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Catenulisporales Catenulisporaceae Catenulispora Catenulispora acidiphila DSM 44928 Positive Filamentous Yes 1 1 Aerobe 25 Mesophilic Terrestrial Free living Sporulating No 479433 NC_013131.1 Bac0003245 Sphaerobacter thermophilus DSM 20745 "Sphaerobacter thermophilus (strain DSM 20745 / S 6022) an obligate aerobic, thermophilic Gram-positive bacterium isolated from aerobic thermophilic sewage sludge (Adaptated from PMID: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=21087). (EBI Integr8)" Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus DSM 20745 Positive Rod No 1 1 Obligate aerobic 45 Thermophilic Sludge Free living Nonsporulating No 479434 NC_013523.1 Bac0003246 Eggerthella lenta DSM 2243 "Eggerthella lenta DSM 2243 is a Gram-positive, rod-shaped bacterium that thrives in temperatures between 35°C and 45°C, placing it in the category of mesophilic microorganisms. As a chemoheterotroph, it derives its energy by breaking down organic compounds, specifically glucose, and utilizing these carbon sources as its primary metabolism. Eggerthella lenta DSM 2243 is an anaerobe, meaning it requires a low-oxygen environment to survive, and is classified as a capnophile, thriving in the presence of carbon dioxide. The microbe's energy production is attributed to its ability to ferment glucose, producing lactic acid as a byproduct. Its rod-shaped morphology allows it to adapt to various environments, and its ability to be found in various body sites, including the gastrointestinal tract, oral cavity, and skin, highlights its versatility and wide range of habitats. Eggerthella lenta DSM 2243 is a gram-positive bacterium, meaning it has a thick peptidoglycan layer in its cell wall. Its rod-shaped morphology allows it to thrive in a variety of environments, and its anaerobic nature enables it to survive in low-oxygen conditions. In addition to its unique characteristics, Eggerthella lenta DSM 2243 has been discovered to play a crucial role in the human gut microbiome, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. Its ability to thrive in the human gut has sparked research interest in its potential applications in human health, particularly in the context of gastrointestinal disorders." Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Eggerthella lenta DSM 2243 Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs - Singles Nonsporulating Yes 479437 NC_013204.1 Bac0003247 Commensalibacter intestini Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Commensalibacter Commensalibacter intestini 479936 JOPB00000000.1 Bac0003248 Pediococcus argentinicus "Pediococcus argentinicus is a Gram-positive, non-spore-forming bacterium characterized by its spherical shape. This organism thrives optimally at a temperature of 37.0°C, which is indicative of its potential adaptation to warm environments, possibly including those found in fermented food products or within the gastrointestinal tracts of warm-blooded animals. ↵↵Pediococcus species, including P. argentinicus, are known for their role in food fermentation, contributing to the production of lactic acid and influencing the flavor and preservation of various food items. The Gram-positive nature of this microbe suggests a robust cell wall structure, which may confer advantages in competitive environments, such as the ability to withstand acidic conditions that typically prevail in fermented substrates.↵↵Understanding the growth conditions and morphological characteristics of P. argentinicus can provide insights into its potential applications in the food industry, particularly in the development of probiotic formulations or as a starter culture in fermentation processes. Moreover, the temperature preference of this organism indicates a potential for optimization in biotechnological applications, where maintaining specific thermal conditions could enhance the efficiency of fermentation processes. The ability of P. argentinicus to thrive at physiological temperatures further underscores its relevance in human-associated environments, which may inform future studies on its functional roles in microbiomes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus argentinicus Gram-positive sphere non-motile 37 mesophilic non-spore-forming 480391 JQCQ00000000.1 Bac0003249 Acetobacter pasteurianus subsp. pasteurianus str. SRCM1001342 "Acetobacter pasteurianus subsp. pasteurianus str. SRCM1001342 is a Gram-negative, non-sporulating bacterium that thrives in aerobic conditions and is characterized as a chemoheterotroph. This strain exhibits optimal growth at a temperature of 30.0°C and has been isolated from dairy environments, indicating its potential role in the fermentation processes associated with dairy products. ↵↵As a member of the Acetobacter genus, it is likely involved in the oxidation of ethanol to acetic acid, a process important in the production of vinegar and other fermented foods. The aerobic nature of this microorganism highlights its requirement for oxygen, which is essential for its metabolic activities. ↵↵The isolation of A. pasteurianus subsp. pasteurianus str. SRCM1001342 from dairy sources suggests that it may play a role in the development of flavors and preservation in fermented dairy products, contributing to both the sensory attributes and the stability of these foods. Further understanding of its biochemical pathways and interactions within dairy ecosystems could provide insights into optimizing fermentation processes and enhancing product quality in the dairy industry." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 481145 NZ_CP021514.1 Bac0003250 Acetobacter ascendens str. LMG 1590 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter ascendens 481146 NZ_CP015167.1 Bac0003251 Acetobacter ascendens str. SRCM101447 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter ascendens 481146 NZ_CP021525.1 Bac0003252 Phaeobacter italicus "Phaeobacter italicus is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. This species is characterized by its unique morphological and physiological properties, aligning it with other members of the Phaeobacter genus known for their involvement in marine environments. The Gram-negative cell wall structure of P. italicus suggests a complex outer membrane that may play a role in its interactions with surrounding microorganisms and its environment.↵↵The aerobic nature of P. italicus indicates that it relies on oxygen for its metabolic processes, which can influence its ecological niche, particularly in oxygen-rich habitats. As a member of the diverse microbial community, P. italicus may engage in various biochemical interactions, potentially contributing to nutrient cycling in its habitat.↵↵Understanding the specific ecological roles of Phaeobacter italicus within its environment may provide insights into the dynamics of marine microbial communities. Its adaptability to optimal growth conditions at 25.0°C could also signify its potential resilience to slight temperature fluctuations, enhancing its competitive edge in specific ecological settings. Overall, P. italicus exemplifies the intricate adaptations of marine bacteria that enable them to occupy specialized niches and participate in ecological functions essential for maintaining the health of marine ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter italicus Gram-negative rod aerobic 25 mesophilic 481446 CVRL00000000.1 Bac0003253 Streptococcus canis FSL Z3-227 "Streptococcus canis FSL Z3-227 is a nonsporulating, cocci-shaped bacterium that thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, it derives its energy from organic compounds, indicating its reliance on a diverse range of substrates for metabolic processes. This metabolic flexibility suggests that S. canis FSL Z3-227 can inhabit various environments, adapting to different nutrient availabilities. ↵↵The presence of this strain in multiple habitats highlights its potential ecological versatility, which could facilitate interactions with a variety of host organisms or communities. Understanding the ecological roles and interactions of S. canis FSL Z3-227 could provide insights into its behavior and significance within microbial ecosystems, particularly in environments where it coexists with other microorganisms. This adaptability may also reflect broader trends in the Streptococcus genus's ability to thrive in diverse ecological niches." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus canis Cocci No 1 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 482234 AIDX00000000.1 Bac0003254 Microcystis aeruginosa SPC777 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 482300 ASZQ00000000.1 Bac0003255 Mycobacterium dioxanotrophicus str. PH-06 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium dioxanotrophicus 482462 NZ_CP020811.1 Bac0003256 Thermus arciformis "Thermus arciformis is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 45.0°C and exhibits aerobic metabolic capabilities. This microbe is non-spore-forming, which may influence its survival strategies in specific environmental contexts. ↵↵Thermus arciformis is notable for its thermophilic nature, enabling it to inhabit high-temperature environments, often associated with geothermal activity. Its aerobic requirement indicates that it relies on oxygen as the terminal electron acceptor in its metabolic processes, suggesting its potential involvement in biogeochemical cycles in hot springs and other thermally influenced ecosystems.↵↵The ability of Thermus arciformis to grow optimally at elevated temperatures highlights its adaptations to extreme conditions, which may provide insights into the structural and functional characteristics of its enzymes and proteins. Such adaptations can be of interest not only for understanding microbial life in extreme environments but also for biotechnological applications where high-temperature processes are essential. The unique physiological traits of Thermus arciformis exemplify the diverse strategies employed by microorganisms to survive and thrive in specific ecological niches." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus arciformis Gram-negative rod aerobic 45 thermophilic non-spore-forming 482827 FNBC00000000.1 Bac0003257 Burkholderia lata str. 383 "Burkholderia lata strain 383 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative aerobic metabolism. This strain is versatile in its habitat preferences, indicating an ability to thrive in various environments, which may include soil, water, or plant-associated niches. The facultative aerobic nature of B. lata str. 383 suggests that it can utilize both aerobic and anaerobic respiration, enabling it to adapt to fluctuating oxygen levels and diverse ecological conditions.↵↵The rod shape of this bacterium is characteristic of many members of the Burkholderia genus, which is known for its metabolic diversity and adaptability. Such traits may contribute to its ecological resilience, allowing B. lata str. 383 to occupy multiple niches, potentially influencing biogeochemical cycles within those environments.↵↵Understanding the ecological role of Burkholderia lata str. 383 could provide insights into its interactions with other microorganisms and its contributions to nutrient cycling in various habitats. The adaptability of this strain to different environmental conditions emphasizes the importance of further research to explore its potential applications in biotechnology or bioremediation." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia lata Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 482957 NC_007509.1 Bac0003258 Burkholderia lata str. A05 "Burkholderia lata str. A05 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic metabolism and is categorized as nonsporulating. This strain’s versatility in oxygen utilization allows it to thrive in various habitats, adapting to both aerobic and anaerobic conditions as needed. ↵↵As a member of the Burkholderia genus, B. lata str. A05 is notable for its metabolic flexibility, which may enable it to exploit a range of organic substrates in diverse environments. The ability to inhabit multiple habitats suggests a potential role in biogeochemical cycles, particularly in environments where organic matter is abundant and variable in composition. ↵↵Given its nonsporulating nature, B. lata str. A05 may rely on other survival strategies to endure unfavorable conditions, emphasizing the importance of understanding its physiological traits in the context of ecological interactions. Insights into this strain's metabolic pathways could provide valuable information for biotechnological applications, including bioremediation or the development of microbial consortia. Ultimately, further research into Burkholderia lata str. A05 may reveal its significance in microbial ecology and its potential contributions to environmental processes." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia lata Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 482957 NZ_CP024943.1 Bac0003259 Bacteroides finegoldii DSM 17565 "Bacteroides finegoldii DSM 17565 is a Gram-negative, rod-shaped bacterium that thrives optimally at anaerobic conditions and is classified as a Heterotroph. This microbe predominantly resides in the human gastrointestinal tract, particularly in the colon, where it plays a crucial role in gut health and metabolism. As an obligate anaerobe, B. finegoldii thrives in environments devoid of oxygen, using fermentation processes to break down complex carbohydrates and contribute to the overall microbial community. Belonging to the Bacteroides genus, this bacterium is known for its diverse metabolic capabilities, allowing it to utilize a wide array of substrates for energy and growth. Its heterotrophic nature signifies that it derives its nutrients from organic matter, including dietary fibers and polysaccharides, which it ferments to produce short-chain fatty acids (SCFAs). These SCFAs, particularly butyrate, are essential for maintaining intestinal health, supporting colonic cell function, and modulating the immune system. Research has shown that Bacteroides finegoldii may also play a role in various health conditions and diseases, reflecting its importance in the human microbiome. Alterations in the levels of this bacterium, along with other gut bacteria, have been associated with obesity, inflammatory bowel disease, and other metabolic disorders. Its presence is a marker of healthy gut flora, and it is routinely studied for its potential to influence therapeutic approaches in gastrointestinal health. Moreover, B. finegoldii is useful in biotechnological applications, such as the production of bioactive compounds and enzymes, highlighting its versatile nature in microbial ecology and industrial uses." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides finegoldii Negative Anaerobe 483215 ABXI00000000.2 Bac0003260 Estrella lausannensis str. CRIB-30 Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Estrella Estrella lausannensis 483423 NZ_LN867111.1 Bac0003261 Thermobifida halotolerans str. DSM 44931 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Thermobifida Thermobifida halotolerans aerobic 37 mesophilic 483545 NZ_CP063196.1 Bac0003262 Geoalkalibacter subterraneus str. Red1 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter subterraneus 483547 NZ_CP010311.1 Bac0003263 Salmonella enterica subsp. enterica serovar Concord "Salmonella enterica subsp. enterica serovar Concord is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This serovar thrives optimally at 37.0°C, which aligns with the typical body temperature of many warm-blooded hosts. As a chemoorganotroph, S. Concord utilizes organic compounds as its energy source, indicating its reliance on host-associated environments for growth and survival.↵↵The microaerophilic nature of S. Concord suggests that it requires reduced oxygen levels for optimal growth, which is consistent with its habitat, primarily associated with hosts. This adaptation may allow the bacterium to colonize specific niches within the gastrointestinal tract of its hosts, where oxygen levels are lower than atmospheric concentrations. ↵↵Given its ecological association, S. enterica subsp. enterica serovar Concord may play a role in the complex interactions within the gut microbiome of its hosts, potentially influencing nutrient cycling and microbial community dynamics. Understanding the specific interactions and ecological roles of S. Concord could provide valuable insights into its contribution to host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 483687 NZ_CP028198.1 Bac0003264 Pseudomonas sp. H9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. H9 483968 SMOK00000000.1 Bac0003265 Phocaeicola plebeius DSM 17135 "Phocaeicola plebeius DSM 17135 is a Gram-negative, non-sporulating rod-shaped bacterium classified within the intestinal microflora of animals. This organism is a chemoheterotroph, deriving its energy from organic compounds, and operates as an anaerobe, thriving in oxygen-depleted environments typical of the gastrointestinal tract. ↵↵As a member of the animal intestinal microbiota, Phocaeicola plebeius may play a significant role in the digestive processes and overall health of its host. Its absence or imbalance could potentially disrupt normal gut function, highlighting its importance in maintaining the homeostasis of the intestinal ecosystem. Furthermore, the specific adaptation to an anaerobic lifestyle suggests that Phocaeicola plebeius may be involved in the fermentation processes, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host metabolism. ↵↵Overall, the traits of Phocaeicola plebeius underline its specialized ecological niche and suggest potential implications for gut health and microbial interactions within the animal intestinal environment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius Negative Rod No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 484018 ABQC00000000.2 Bac0003266 Bifidobacterium bifidum BGN4 "The microbe Bifidobacterium bifidum BGN4 exhibits the following characteristics: Thermophilic (-phile), Chemoheterotroph, using oxidative phosphorylation for energy production, Gram-positive, banana-shaped, present in the gastrointestinal tract of humans and animals, and has an Obligate Anaerobe oxygen preference. As a Thermophilic microbe, Bifidobacterium bifidum BGN4 thrives in high-temperature environments, typically between 37°C to 45°C. This adaptation allows it to inhabit the human gut, where the temperature is stable and favorable for its growth. As a Chemoheterotroph, Bifidobacterium bifidum BGN4 uses organic compounds as its energy source, typically in the form of carbohydrates, peptides, and fats. It obtains these compounds from its host's diet or from the breakdown of host tissues. The microbe produces energy through oxidative phosphorylation, where energy from the breakdown of molecules is used to generate ATP. Bifidobacterium bifidum BGN4 is a Gram-positive microbe, characterized by the presence of a thick peptidoglycan layer in its cell wall. This layer provides structural support and helps maintain the cell's shape, which is typically banana-shaped. Bifidobacterium bifidum BGN4 is found in the gastrointestinal tract of humans and animals, where it plays a crucial role in the breakdown and absorption of nutrients. It is also present in fermented foods and supplements, where it is used as a probiotic. As an Obligate Anaerobe, Bifidobacterium bifidum BGN4 requires a strictly anaerobic environment to grow. This means that it cannot tolerate the presence of oxygen, which can be toxic to the microbe. Instead, it thrives in environments where oxygen levels are low or absent. Bifidobacterium bifidum BGN4 has been shown to have a range of beneficial effects on human health, including the regulation of gut motility, inflammation, and immune responses. It has also been used as a probiotic in the treatment of various gastrointestinal disorders, such as irritable bowel syndrome and inflammatory bowel disease." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 484020 NC_017999.1 Bac0003267 Paenibacillus taichungensis str. DB-4 "Paenibacillus taichungensis strain DB-4 is a rod-shaped, spore-forming bacterium that exhibits both Gram-positive and Gram-negative characteristics. This microbe demonstrates a facultative metabolism, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for P. taichungensis DB-4 is around 29.0°C, which suggests a preference for moderately warm conditions that may be encountered in various ecological niches.↵↵As a member of the Paenibacillus genus, this strain is likely to possess a range of metabolic capabilities, although specific metabolic pathways are not detailed here. Its ability to form spores indicates a resilience to environmental stressors, enabling survival in fluctuating conditions that may be inhospitable for other bacteria. This trait is particularly valuable in natural ecosystems where competition and environmental shifts are prevalent.↵↵The facultative anaerobic nature of P. taichungensis DB-4 suggests potential versatility in its ecological roles, allowing it to adapt to varying oxygen levels. This adaptability may facilitate its presence in diverse habitats, including soil and sediment, where it could play a role in nutrient cycling and organic matter decomposition. Further research into the specific interactions and contributions of P. taichungensis DB-4 within its environment could provide insights into its ecological significance and potential applications in biotechnology." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus taichungensis Gram-negative / Gram-positive rod facultative aerobe/anaerobe 29 mesophilic spore-forming 484184 QICW00000000.1 Bac0003268 Sphingobium sp. YBL2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. YBL2 484429 NZ_CP010960.1 Bac0003269 Pelosinus sp. UFO1 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Pelosinus Pelosinus sp. UFO1 anaerobic 484770 NZ_CP008852.1 Bac0003270 Thalassomonas actiniarum str. A5K-106 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassomonas Thalassomonas actiniarum 485447 NZ_CP059735.1 Bac0003271 Aquisalibacillus elongatus str. DSM 18090 "Aquisalibacillus elongatus str. DSM 18090 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microorganism exhibits optimal growth at a temperature of 37.0°C, suggesting that it thrives in warm environments. As a member of the Aquisalibacillus genus, it may share ecological niches with other bacteria that prefer similar conditions, although specific ecological roles or interactions are not detailed in the available traits.↵↵Given its aerobic requirement, A. elongatus may play a role in the biogeochemical cycling of nutrients in oxygen-rich environments, potentially influencing the dynamics of microbial communities where it is found. The absence of sporulation indicates that this strain may have specific survival strategies that do not rely on forming spores, which could affect its resilience to environmental stressors.↵↵Overall, the characteristics of A. elongatus str. DSM 18090 underscore its adaptation to a particular thermal and oxygenic habitat, highlighting the importance of such microorganisms in sustaining ecological balance in similar environments. Further studies could elucidate its specific roles within microbial communities and its potential applications in biotechnology or bioremediation." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Aquisalibacillus Aquisalibacillus elongatus Gram-positive rod non-motile aerobic 37 mesophilic non-spore-forming 485577 RKRF00000000.1 Bac0003272 Ktedonobacter racemifer DSM 44963 "Ktedonobacter racemifer DSM 44963 is a Gram-positive, filamentous bacterium characterized by its ability to form spores and its aerobic metabolism as a heterotroph. This microbe thrives optimally at a temperature of 32.0°C, indicating a preference for moderate thermal conditions. The filamentous morphology of K. racemifer suggests an adaptation that may facilitate nutrient absorption and interaction with its microbial environment.↵↵As a spore-forming organism, K. racemifer has the capacity to withstand adverse conditions, ensuring its persistence in fluctuating environments. The aerobic nature of its metabolism implies that it requires oxygen for energy production, which is crucial for its growth and survival. This trait positions K. racemifer within ecosystems where oxygen is readily available, potentially influencing its interactions with other microbial species.↵↵Ktedonobacter racemifer's filamentous structure may play a role in its ecological functions, particularly in biofilm formation or in the degradation of organic materials. Such adaptations could contribute to nutrient cycling in its habitat, emphasizing the importance of filamentous microbes in maintaining ecosystem health and stability. The ability to form spores also suggests a survival strategy that may enable K. racemifer to endure periods of nutrient scarcity or unfavorable environmental conditions. Overall, Ktedonobacter racemifer DSM 44963 exemplifies the diverse adaptations of filamentous bacteria in aerobic environments." Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonobacter Ktedonobacter racemifer Gram-positive filament non-motile aerobic 32 heterotroph mesophilic spore-forming 485913 ADVG00000000.1 Bac0003273 Halomicrobium mukohataei DSM 12286 "Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) is a halophilic archaeon, originally isolated from alt flats in Argentina. This organism is an extreme halophile requiring at least 14.5% NaCl to grow. The optimal growth with the normal rod-shaped morphology is obtained at about 45 degrees Celsius. Above this temperature, cells grow rapidly, but assume a spherical morphology. No growth is obtained above 52 degrees Celsius. The pH range for growth is 6.2-8.0, and no growth is observed below pH 6.0 or above pH 8.2. H.mukohataei grows on glucose, galactose, sucrose, maltose or glycerol as single carbon and energy source. No growth is obtained on sodium acetate, sodium succinate, L-glutamate or ribose. Anaerobic growth is observed with nitrate as electron acceptor, with the formation of nitrite and gas. (Adapted from PMID: 12361294). (HAMAP: HALMD)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium mukohataei DSM 12286 Rod Yes 1 1 Facultative 45 Mesophilic Specialized Free living Singles Nonsporulating No 485914 NC_013201.1 Bac0003274 Desulfohalobium retbaense DSM 5692 "Desulfohalobium retbaense (strain DSM 5692) is an anaerobic, moderately halophilic sulfate-reducing Gram-negative bacterium isolated from sediment of the pink hypersaline Lake Retba in Senegal, Africa. This organism incompletely oxidizes ethanol, pyruvate, and lactate to acetate and CO(2). Sulfate, sulfite, thiosulfate, and elemental sulfur are used as electron acceptors and reduced to H2S. Growth occurs at pH values ranging from 5.5 to 8.0, with an optimum pH between 6.5-7.0. The optimum temperature for growth is between 37 to 4O degrees Celsius, and 45 degrees Celsius is the upper temperature limit for growth. NaCl and MgCl(2), are required for growth, with an optimum NaCl concentration near 10%. (Adaptated from: http://ijs.sgmjournals.org/cgi/reprint/41/1/74.pdf). (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfohalobium Desulfohalobium retbaense DSM 5692 Negative Bacilli No 1 2 Anaerobic 37 Mesophilic Specialized Free living Nonsporulating No 485915 NC_013223.1 Bac0003275 Streptococcus dysgalactiae subsp. equisimilis GGS_124 "Streptococcus dysgalactiae (SD) is one of several Lancefield group C, G, and L streptococci falling within the pyogenic group of Streptococcus. It has been divided into 2 subspecies, S.dysgalactiae subsp. dysgalactiae (SDD) which is pathogenic for animals and S. dysgalactiae subsp. equisimilis (SDE) which is both a human commensal organism and a human pathogen. SDE was primarily regarded as a human commensal organism but is now recognized as an increasingly important human pathogen, which can cause a wide spectrum of human diseases, including cellulitis, peritonitis, septic arthritis, pneumonia, endocarditis, acute pharyngitis, bacteremia, and toxic shock syndrome. It can also cause disease in animals. Strain D166B is a Lancefield group G SDE, collected in 1939 from a blister of a child with epidermolysis bullosa, an inherited skin disorder that causes blistering in response to minor injury. Comparison of 2 SDE genomes with a draft SDD genome indicated the 2 subspecies are very similar with only 12-16% unique genes. Most differences lie in the virulence loci (adapted from PMID 15236673). (EBI Integr8)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae GGS_124 Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Homo sapiens Chains-Singles Nonsporulating Yes 486410 NC_012891.1 Bac0003276 Mycobacterium riyadhense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium riyadhense microaerophile 37 mesophilic 486698 LQPQ00000000.1 Bac0003277 Paraburkholderia rhynchosiae str. WSM 3937 "Paraburkholderia rhynchosiae strain WSM 3937 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This strain is part of the diverse Paraburkholderia genus, which encompasses a variety of environmental and clinical isolates. The rod shape of P. rhynchosiae suggests adaptations that may facilitate its motility and colonization in various substrates, although specific motility details are not provided.↵↵As a member of the Burkholderia family, Paraburkholderia species are known for their metabolic versatility, which may include the ability to degrade a wide range of organic compounds. This metabolic adaptability is often linked to their ecological roles within soil and plant-associated environments. While the specific ecological niches of P. rhynchosiae strain WSM 3937 have not been detailed, its traits suggest potential interactions with plant hosts or contributions to nutrient cycling in its habitat.↵↵Future research could shed light on the specific environmental conditions under which P. rhynchosiae thrives, as well as its potential applications in bioremediation or agriculture. Understanding the metabolic pathways utilized by this strain could provide insights into its ecological significance and possible interactions with other microorganisms in its environment, contributing to our broader understanding of microbial community dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia rhynchosiae Gram-negative rod 29 mesophilic 487049 PNXY00000000.1 Bac0003278 Halopseudomonas xinjiangensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas xinjiangensis 487184 NZ_LT629736.1 Bac0003279 Streptococcus pneumoniae Hungary19A-6 "Streptococcus pneumoniae Hungary19A-6 is a Gram-positive, cocci-shaped bacterium that thrives in moderate temperatures, classified as a mesophile. This microbe is a heterotroph, relying on organic compounds for nutrition, and it exhibits facultative anaerobic behavior, meaning it can grow in both aerobic and anaerobic conditions. S. pneumoniae is predominantly found in the nasopharynx of humans but can also inhabit the lungs, middle ear, and, occasionally, the bloodstream. S. pneumoniae Hungary19A-6 is part of a larger group of bacteria known for their encapsulated strains, which provides enhanced virulence through immune evasion. The capsule plays a critical role in resisting phagocytosis, making it one of the major pathogenic forces behind pneumococcal diseases, including pneumonia, meningitis, and otitis media. The bacterium's cocci shape contributes to its characteristic formation in pairs (diplococci) or chains, which can be visually distinguished under a microscope following Gram staining. As a facultative anaerobe, S. pneumoniae can switch between aerobic metabolism, utilizing oxygen, and anaerobic fermentation when oxygen is scarce. This adaptability allows it to thrive in various environments within the human body. The strain Hungary19A-6 is particularly noteworthy for its antibiotic resistance patterns, which have implications for treatment strategies. Researchers continue to study this strain to understand its epidemiology and resistance mechanisms further, as it plays a significant role in public health. The development of vaccines targeting pneumococcal infections underscores the importance of addressing the pathogenic threat posed by S. pneumoniae." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Hungary19A-6 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Homo sapiens Pairs - Chains Nonsporulating Yes 487214 NC_010380.1 Bac0003280 Acinetobacter soli Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter soli 487316 RHXC00000000.1 Bac0003281 Acinetobacter soli str. GFJ2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter soli 487316 NZ_CP016897.1 Bac0003282 Stenotrophomonas pavanii "Stenotrophomonas pavanii is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and optimal growth temperature of 29.0°C. As a member of the genus Stenotrophomonas, this microorganism is notable for its metabolic versatility, which allows it to thrive in a variety of environments. The Gram-negative cell wall structure contributes to its resistance to certain antibiotics and environmental stresses, making S. pavanii an organism of interest in both ecological and clinical contexts.↵↵The optimal growth temperature of 29.0°C suggests that S. pavanii may be well adapted to warm environments, potentially influencing its distribution and ecological interactions. While specific ecological roles and interactions of S. pavanii are not detailed in the available data, its presence in diverse habitats could indicate a role in nutrient cycling or bioremediation processes. The metabolic capabilities inherent to members of the Stenotrophomonas genus further imply that S. pavanii may participate in the degradation of complex organic compounds, contributing to soil and water quality. This adaptability may also position S. pavanii as a potential candidate for biotechnological applications, particularly in environments that favor its growth temperature and metabolic traits." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas pavanii Gram-negative rod non-motile 29 mesophilic non-spore-forming 487698 NIXP00000000.1 Bac0003283 Xanthomonas arboricola pv. arracaciae str. CFBP 7407 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 487851 MIGU00000000.1 Bac0003284 Xanthomonas citri pv. durantae str. LMG696 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 487862 NZ_CP066346.1 Bac0003285 Xanthomonas arboricola pv. guizotiae str. CFBP 7409 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 487867 MDSL00000000.1 Bac0003286 Xanthomonas translucens pv. undulosa Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas translucens apoplast spaces; mesophyll; phyllosphere Plant 487909 NZ_CP009750.1 Bac0003287 Burkholderia latens "Burkholderia latens is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. As a non-spore-forming organism, B. latens relies on its metabolic capabilities to thrive in oxygen-rich environments. This species is part of the Burkholderia genus, which is known for its diverse ecological roles and can be found in various environments, including soil and water.↵↵The aerobic nature of B. latens suggests that it plays a significant role in processes that require oxygen, potentially contributing to nutrient cycling and the degradation of organic matter in its ecological niches. While specific interactions or symbiotic relationships have not been detailed, the presence of B. latens in diverse habitats may indicate its adaptability and potential utility in bioremediation or other environmental applications. ↵↵Overall, B. latens exemplifies the ecological versatility often seen within the Burkholderia genus, highlighting its capacity to thrive in aerobic conditions and potentially interact with other microorganisms in its environment." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia latens Gram-negative rod aerobic non-spore-forming 488446 NZ_CP013438.1 Bac0003288 Burkholderia contaminans "Burkholderia contaminans is a Gram-negative bacterium belonging to the Burkholderia genus, which is known for its environmental versatility and ability to inhabit various ecological niches. This microbe exhibits characteristics typical of Gram-negative organisms, including the presence of an outer membrane that contains lipopolysaccharides, contributing to its robust resistance to various environmental stresses.↵↵While specific ecological or pathogenic traits of Burkholderia contaminans have not been detailed, the genus Burkholderia is often associated with diverse environments, including soil and water, where it can play significant roles in nutrient cycling and interactions with other microbial communities. These bacteria are known for their metabolic versatility, enabling them to utilize a wide range of organic compounds as carbon sources, which may suggest potential roles in bioremediation processes.↵↵In summary, Burkholderia contaminans represents a noteworthy member of the Burkholderia genus, characterized by its Gram-negative structure and adaptable metabolic capabilities. Its ecological significance may lie in its potential contributions to environmental processes, warranting further investigation into its specific roles within microbial communities and its interactions with the surrounding environment." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia contaminans Negative 488447 PQVP00000000.1 Bac0003289 Marinobacter zhejiangensis "Marinobacter zhejiangensis is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0°C. This marine microorganism is characterized by its non-spore-forming nature, which suggests a reliance on moisture and favorable conditions for survival rather than forming spores for resilience in adverse environments. The specific habitat or ecological niche from which Marinobacter zhejiangensis was isolated has not been detailed, but its genus is known for its role in marine ecosystems, often contributing to the degradation of organic matter.↵↵Given its aerobic nature, Marinobacter zhejiangensis likely participates in biogeochemical cycling in marine waters, potentially influencing nutrient dynamics and organic matter decomposition. The bacterium's adaptation to a specific thermal range indicates its potential utility in studies related to marine thermal gradients and climate change effects on microbial communities. Overall, Marinobacter zhejiangensis exemplifies the diversity of microbial life in oceanic environments and highlights the importance of studying such organisms to understand their roles in marine ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter zhejiangensis Gram-negative rod aerobic 32 mesophilic non-spore-forming 488535 FOUE00000000.1 Bac0003290 Burkholderia diffusa "Burkholderia diffusa is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions. This non-spore-forming microbe is characterized by its ability to metabolize a diverse array of organic compounds, which suggests a potential role in bioremediation and nutrient cycling in various environments. The aerobic nature of B. diffusa indicates that it requires oxygen for growth, aligning it with other members of the Burkholderia genus known for their metabolic versatility.↵↵Due to its Gram-negative cell wall structure, B. diffusa may exhibit resistance to certain antibiotics, a trait common among many Gram-negative bacteria. This characteristic may have implications for its ecological interactions, particularly in environments where it coexists with other microbial populations. Furthermore, the rod shape of B. diffusa may contribute to its motility and colonization capabilities, factors that are often critical in microbial community dynamics.↵↵Unique to B. diffusa is its potential adaptation to specific ecological niches, which may include soil and water environments where organic matter is abundant. This adaptability could enhance its role in the degradation of pollutants, thereby supporting ecosystem health and stability. Understanding the metabolic pathways and ecological functions of B. diffusa can provide insights into its contributions to biogeochemical cycles and its potential applications in environmental biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia diffusa Gram-negative rod aerobic non-spore-forming 488732 NZ_CP013363.1 Bac0003291 Ectopseudomonas chengduensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas chengduensis 489632 FMZQ00000000.1 Bac0003292 Solimonas aquatica Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Solimonas Solimonas aquatica 489703 FOFS00000000.1 Bac0003293 Hydrocarboniphaga daqingensis "Hydrocarboniphaga daqingensis is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microbe thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. Its Gram-negative cell wall structure indicates the presence of an outer membrane, which may confer specific advantages in its ecological niche, such as resistance to certain antibiotics or environmental stresses.↵↵As an aerobic organism, Hydrocarboniphaga daqingensis requires oxygen for growth and energy production, positioning it as a potential player in biogeochemical cycles, particularly in environments enriched with hydrocarbons. This trait may enable it to contribute to the degradation of hydrocarbon pollutants, making it of interest for bioremediation applications.↵↵The ecological role of Hydrocarboniphaga daqingensis could be significant in environments such as oil-contaminated sites, where its metabolic capabilities might facilitate the breakdown of complex hydrocarbon compounds, thereby aiding in the restoration of affected ecosystems. Further investigation into its metabolic pathways and interactions with other microbial communities could reveal additional insights into its functional contributions within such biogeochemical contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Hydrocarboniphaga Hydrocarboniphaga daqingensis Gram-negative rod aerobic 25 mesophilic non-spore-forming 490188 FQWZ00000000.1 Bac0003294 Amycolatopsis marina "Amycolatopsis marina is a Gram-positive bacterium that demonstrates aerobic metabolism and thrives optimally at a temperature of 29.0°C. This microbial species belongs to the genus Amycolatopsis, which is known for its ability to produce various bioactive compounds. As a member of the Actinobacteria phylum, A. marina exhibits the characteristic high G+C content in its DNA, which is a hallmark of many actinobacteria and is often associated with their complex secondary metabolite production.↵↵The aerobic nature of A. marina indicates that it relies on oxygen for its growth and metabolic processes, which may influence its ecological niches and interactions with other microorganisms in its environment. Given its optimal growth temperature, A. marina may be well-suited to marine or estuarine environments where temperatures are moderate and the presence of oxygen is abundant.↵↵Furthermore, the ability of A. marina to thrive in oxygen-rich conditions suggests potential roles in biogeochemical cycles, particularly in nutrient cycling within aquatic ecosystems. The ecological implications of its metabolic activities could contribute to the breakdown of organic matter or the production of compounds that influence microbial community dynamics in marine habitats, highlighting the importance of this bacterium in maintaining ecological balance." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis marina Gram-positive non-motile aerobic 29 mesophilic 490629 FOKG00000000.1 Bac0003295 Marinobacter sp. BSs20148 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. BSs20148 490759 NC_018268.1 Bac0003296 Enterococcus faecalis TX0104 "Enterococcus faecalis TX0104 is a Gram-positive, cocci-shaped bacterium that thrives in mesophilic temperatures (20-45°C), operates as a chemoheterotroph, and exhibits facultative anaerobic behavior. Belonging to the Enterococcus genus, this microorganism is typically found residing in various body sites of mammals, including the intestines and fecal matter, and can also be isolated from the oral cavity and genitourinary tracts. As a Gram-positive bacterium, Enterococcus faecalis TX0104 retains the crystal violet stain used in the Gram staining procedure, resulting in a purple coloration. Its cocci shape and ability to form pairs or short chains enhance its survivability in the diverse environments it inhabits. The mesophilic nature of E. faecalis allows it to thrive in the human body, where it can tolerate variations in temperature within physiological ranges. Its classification as a chemoheterotroph indicates that it derives energy not from the sun but from organic compounds, which enhances its adaptability in nutrient-variable environments. The facultative anaerobic lifestyle of Enterococcus faecalis TX0104 is particularly noteworthy, as it can grow in the presence or absence of oxygen. This versatility enables it to flourish in anaerobic conditions, like those found in the gastrointestinal tract, while also surviving in aerobic environments such as the oral cavity.E. faecalis is known for its role in human health and disease; it can contribute to gut flora and aid in digestion. However, it is also recognized for its potential pathogenicity, particularly in hospital settings, where it can cause infections, including urinary tract infections and endocarditis. Its inherent resistance to many antibiotics has made E. faecalis a significant concern in clinical microbiology and an important subject of study in the field of infectious diseases." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 491074 ACGL00000000.1 Bac0003297 Limosilactobacillus reuteri SD2112 "Limosilactobacillus reuteri SD2112 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism is classified as a facultative anaerobe, allowing it to thrive in both the presence and absence of oxygen. L. reuteri SD2112 has been isolated from various habitats, suggesting its adaptability and potential roles in different ecological niches.↵↵The ability to survive in diverse environments indicates that L. reuteri SD2112 may play significant roles in microbial communities, particularly in fermentation processes and as a potential probiotic. Its facultative anaerobic nature suggests that it can effectively compete with other microorganisms under varying oxygen levels, contributing to its resilience and functionality in complex ecosystems. ↵↵Interestingly, the presence of L. reuteri SD2112 in multiple habitats may also imply its involvement in the maintenance of gut health in different hosts, as well as its potential utility in food fermentation and preservation. Further research into its metabolic capabilities could elucidate its specific interactions within microbial consortia and its practical applications in biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 491077 NC_015699.1 Bac0003298 Anoxybacillus flavithermus WK1 "Anoxybacillus spp. are facultative anaerobes found in diverse moderate- to high-temperature habitats such as geothermal hot springs, manure and processed foods such as gelatin. Anoxybacillus flavithermus is a major contaminant of milk powder and gelatin. Strain WK1 (DSM 21510) was isolated from the waste water drain at the Wairakei geothermal power station in New Zealand. The bacterium is a dark yellow color which is caused by accumulation of a carotenoid pigment in the cell membrane. It is unusual in its ability to grow in waters that are super-saturated with amorphous silica, and where opaline silica sinter is actively forming. Sinter is a deposit of opaline or amorphous silica with small cavities that occurs as an incrustation around hot springs and geysers and sometimes forms conical mounds (geyser cones) or terraces. The ability of A. flavithermus to grow in super-saturated silica solutions makes it an ideal subject to study the processes of sinter formation, which might be similar to the biomineralization processes that occurred at the dawn of life. The genome shows clear signs of genome compaction in the Anoxybacilus/Geobacillus branch, compared to other members of the family Bacillaceae. Synthesis of long chain polyamines and biofilm formation by A. flavithermus could regulate sinter formation and control the textural features of the resulting siliceous sinters. The presence of an array of c-di-GMP-related signal transduction proteins suggests that A. flavithermus could regulate biofilm formation in response to the environmental conditions (adapted from PubMed 19014707 and Encyclopaedia Brittanica). (HAMAP: ANOFW)" Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus flavithermus Positive Rod Yes 1 1 Facultative aerobe 60 Thermophilic Specialized Free living Sporulating No 491915 NC_011567.1 Bac0003299 Megamonas rupellensis "Megamonas rupellensis is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, respiratory tract, and skin, across different species. As an Obligate Anaerobe, M. rupellensis requires the absence of oxygen to survive and grow. The Gram-negative characteristic indicates that the microbe's cell wall is composed of a thin peptidoglycan layer, which is typically associated with a higher degree of pathogenicity. The rod-shaped morphology allows for efficient movement and colonization in its environment. As a Chemoheterotroph, M. rupellensis relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its metabolic processes. Its presence in various body sites highlights its adaptability and ability to coexist with other microorganisms. The mesophilic temperature preference suggests that M. rupellensis is well-suited to thrive in moderate temperatures, typical of many environmental and host ecosystems. The obligate anaerobic nature of M. rupellensis underscores its sensitivity to oxygen, which can be toxic to the microbe. M. rupellensis plays a significant role in the fermentation of complex carbohydrates, producing short-chain fatty acids that contribute to the health and balance of the host's microbiome, and its unique characteristics have led to its identification as a key player in the degradation of certain pollutants in anaerobic environments." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas rupellensis No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 491921 QRTP00000000.1 Bac0003300 Marinomonas alcarazii str. CECT 7730 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas alcarazii 491949 QKLW00000000.1 Bac0003301 Marinomonas foliarum str. CECT 7731 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas foliarum 491950 QPJQ00000000.1 Bac0003302 Marinomonas posidonica IVIA-Po-181 str. IVIA-Po181 "Marinomonas posidonica IVIA-Po-181 str. IVIA-Po181 is a Gram-negative, rod-shaped bacterium that thrives in marine environments and exhibits an aerobic metabolism. This organism, belonging to the genus Marinomonas, is characterized by its adaptation to life in oxygen-rich aquatic ecosystems, which is indicative of its metabolic requirements and ecological niche.↵↵As a member of the Marinomonas genus, M. posidonica may play a significant role in biogeochemical cycles within its marine habitat, particularly in nutrient cycling and organic matter degradation. The rod shape of this bacterium is common among marine microorganisms, which often adapt their morphology to optimize survival and nutrient uptake in their specific environments.↵↵Given its marine habitat, M. posidonica may interact with various microbial communities, contributing to the complex dynamics of marine ecosystems. This bacterium's aerobic nature suggests that it may participate in processes such as aerobic respiration and the breakdown of organic compounds, potentially influencing the availability of nutrients for other marine organisms. Understanding the specific functions and interactions of M. posidonica within its ecosystem may provide insights into the broader ecological roles of similar marine bacteria and their contributions to marine biodiversity and health." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas posidonica Negative Rod Yes Aerobic Mesophilic Marine Free living 491952 NC_015559.1 Bac0003303 Bacillus velezensis str. A35 "Bacillus velezensis strain A35 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, enabling it to survive in various environmental conditions. As an aerobic organism, it requires oxygen for its metabolic processes, and it is predominantly found in terrestrial habitats. The presence of endospores allows B. velezensis A35 to endure nutrient-limited environments and adverse conditions, contributing to its resilience and adaptability.↵↵This strain is part of the Bacillus genus, which is renowned for its diverse metabolic capabilities and potential applications in agriculture and biotechnology. The ability to form spores not only aids in survival but may also facilitate the dissemination of this microbe across different soil environments. Given its terrestrial habitat, B. velezensis A35 could play a significant role in soil health, possibly contributing to nutrient cycling and supporting plant growth through interactions with the rhizosphere.↵↵Furthermore, the ecological implications of B. velezensis A35's sporulation and aerobic lifestyle could be significant, as it may engage in competitive interactions with other soil microorganisms, influencing community dynamics and nutrient availability. Overall, the traits of Bacillus velezensis strain A35 highlight its potential importance in terrestrial ecosystems, particularly in the context of sustainable agriculture and soil management practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 VEWU00000000.1 Bac0003304 Bacillus velezensis str. S2 "Bacillus velezensis strain S2 is a Gram-positive, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolism. This strain is characterized by its ability to form spores, a trait that enhances its survival under adverse environmental conditions. The sporulation process is a crucial aspect of the life cycle of Bacillus species, allowing them to endure extreme conditions such as nutrient deprivation and desiccation.↵↵As an aerobic organism, Bacillus velezensis str. S2 requires oxygen for its growth and metabolic functions, positioning it within environments rich in oxygen availability. Its resilience and adaptability to terrestrial ecosystems suggest that it may play significant roles in soil health and nutrient cycling. Furthermore, the ability to sporulate indicates potential applications in agriculture, where such strains could be harnessed for biofertilization or pest management strategies.↵↵Notably, the ecological implications of Bacillus velezensis str. S2 extend beyond mere survival; its presence may influence microbial community dynamics and soil microbiome interactions, ultimately contributing to plant growth and soil fertility. This highlights the importance of understanding the ecological roles of sporulating bacteria in terrestrial environments, particularly in the context of sustainable agricultural practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 VEWX00000000.1 Bac0003305 Bacillus velezensis str. ZeaDK315Endobac16 "Bacillus velezensis str. ZeaDK315Endobac16 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in terrestrial habitats as an aerobic organism. This strain is characterized by its ability to form endospores, a feature that enhances its survival under unfavorable environmental conditions. As a member of the Bacillus genus, it is expected to possess metabolic pathways that allow it to utilize a variety of organic substrates, potentially contributing to nutrient cycling in its terrestrial environment.↵↵The capacity for aerobic respiration suggests that Bacillus velezensis str. ZeaDK315Endobac16 may play a role in the degradation of organic matter, thus influencing soil health and fertility. Furthermore, the sporulating nature of this strain may provide insights into its resilience and adaptability in fluctuating environmental conditions, allowing it to persist in diverse terrestrial ecosystems. Understanding the traits of this bacterium may offer valuable perspectives on its potential applications in agriculture, particularly in promoting plant growth or controlling soil-borne pathogens." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 NZ_CP043809.1 Bac0003306 Bacillus velezensis str. 83 "Bacillus velezensis str. 83 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in terrestrial habitats as an aerobic organism. This species is part of the Bacillus genus, which is characterized by its ability to form endospores, a trait that enhances its survival in various environmental conditions. The aerobic nature of B. velezensis str. 83 indicates its reliance on oxygen for metabolic processes, which is a key factor in its ecological adaptability.↵↵The sporulating capability of this strain suggests it may endure unfavorable conditions, allowing it to persist in soil environments where nutrient availability can fluctuate. Such traits are often associated with beneficial microbes that play significant roles in soil health and plant growth promotion. Bacillus velezensis strains are generally recognized for their potential applications in agriculture, particularly as biocontrol agents and biofertilizers due to their ability to produce various metabolites that can enhance plant resilience.↵↵Given its terrestrial habitat and aerobic lifestyle, B. velezensis str. 83 may contribute to nutrient cycling and soil structure improvement, thereby playing a vital role in maintaining ecosystem functions. Understanding the specific mechanisms through which this strain interacts with its environment could provide insights into sustainable agricultural practices and soil management strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 NZ_CP034203.1 Bac0003307 Bacillus velezensis str. A25 "Bacillus velezensis str. A25 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in terrestrial habitats as an aerobic organism. This strain is part of the Bacillus genus, which is well-known for its ability to form endospores, a characteristic that enables it to withstand adverse environmental conditions. The sporulation process of B. velezensis str. A25 contributes to its resilience and potential for survival in varied terrestrial ecosystems. ↵↵As an aerobe, this microbe requires oxygen for growth and metabolism, indicating its role in aerobic processes within soil environments. Given its terrestrial habitat, B. velezensis str. A25 may play a significant role in soil health and nutrient cycling, potentially influencing the microbial community structure and function within its ecosystem. Additionally, the ability to sporulate may allow this strain to persist in environments that experience fluctuating conditions, making it a noteworthy candidate for further study in agricultural or ecological applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 VEWT00000000.1 Bac0003308 Bacillus velezensis str. ATR2 "Bacillus velezensis strain ATR2 is a Gram-positive, rod-shaped bacterium that exhibits a sporulating behavior and thrives in terrestrial habitats. This microbe is classified as an aerobe, indicating that it requires oxygen for its growth and metabolic processes. The ability to form spores is significant, as it allows B. velezensis ATR2 to endure unfavorable environmental conditions, promoting its survival and potential for persistence in various soil ecosystems.↵↵As a member of the Bacillus genus, this strain likely contributes to nutrient cycling and soil health, which can be vital for agricultural productivity. Its aerobe nature suggests a competitive advantage in well-aerated environments, where it may play a role in the suppression of soil-borne pathogens or in the promotion of plant growth through beneficial interactions. The ecological implications of B. velezensis ATR2 extend to its potential use in biocontrol and as a biofertilizer, aligning with the broader characteristics of the Bacillus species known for their plant-associated benefits. This dual role in both soil ecology and agricultural applications underscores the importance of understanding the specific traits and behaviors of such microorganisms in the context of sustainable farming practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 NZ_CP018133.1 Bac0003309 Bacillus velezensis str. TK2 "Bacillus velezensis str. TK2 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its aerobic metabolism, indicating a reliance on oxygen for growth. This microbe is primarily found in terrestrial habitats, where it plays a role in various ecological interactions. ↵↵The sporulation capability of B. velezensis str. TK2 allows it to endure unfavorable environmental conditions, enabling the bacterium to survive in diverse terrestrial ecosystems. As an aerobic organism, it thrives in environments rich in oxygen, which may influence its distribution and interactions within soil microbiomes. ↵↵Notably, the presence of B. velezensis strains in soil environments has been associated with beneficial agricultural properties, such as plant growth promotion and pathogen suppression. This suggests that B. velezensis str. TK2 may contribute to soil health and plant productivity, potentially serving as a biocontrol agent in sustainable agriculture practices. The ecological role of this strain highlights the importance of microbial diversity in terrestrial ecosystems and the potential for harnessing beneficial microbial traits for agricultural applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 VEWY00000000.1 Bac0003310 Bacillus velezensis str. YL1 "Bacillus velezensis strain YL1 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolism. This species is found in terrestrial habitats, suggesting its adaptation to soil environments where it may play roles in nutrient cycling and soil health. The sporulating nature of B. velezensis YL1 allows it to survive adverse conditions, including nutrient scarcity and extreme environmental stressors, by entering a dormant state.↵↵The aerobic requirement indicates that B. velezensis YL1 thrives in environments rich in oxygen, which could influence its ecological interactions within soil microbiomes. Such bacteria are often involved in the promotion of plant growth and can contribute to the suppression of certain soil-borne pathogens, though specific interactions with plants or other microbes have not been detailed in the current data.↵↵Understanding the traits of Bacillus velezensis YL1 can provide insights into its potential applications in agriculture, particularly in biocontrol or as a biofertilizer. Its ability to sporulate and thrive in aerobic conditions positions it as a candidate for use in sustainable agricultural practices, enhancing soil health and plant productivity while potentially minimizing reliance on chemical fertilizers. Further studies could elucidate the specific mechanisms by which this strain interacts with its environment and contributes to ecological balance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 492670 QYZO00000000.1 Bac0003311 Falsibacillus pallidus str. DSM 25281 "Falsibacillus pallidus strain DSM 25281 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolic requirements. This species thrives optimally at a temperature of 32.0°C, which suggests a preference for moderately warm environments that may mimic certain natural habitats. ↵↵As a spore-forming organism, F. pallidus demonstrates resilience and adaptability, enabling it to survive in fluctuating environmental conditions. The Gram-positive nature of this bacterium indicates a thick peptidoglycan layer in its cell wall, which can offer protection against external stresses and may play a role in its ecological fitness. ↵↵The combination of aerobic respiration and spore formation implies that F. pallidus might occupy ecological niches where oxygen is readily available, yet it can endure periods of nutrient scarcity or adverse conditions through its spore life cycle. This adaptability may allow it to participate in various biogeochemical processes within its habitat, potentially contributing to nutrient cycling and soil health. Further investigation into its specific ecological roles could reveal insights into its interactions within microbial communities and its significance in environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Falsibacillus Falsibacillus pallidus Gram-positive rod motile aerobic 32 mesophilic spore-forming 493781 QQAY00000000.1 Bac0003312 Brevibacillus panacihumi Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus panacihumi 497735 RHHT00000000.1 Bac0003313 Chthoniobacter flavus Ellin428 "Chthoniobacter flavus Ellin428 is a Gram-negative, ovoid-shaped bacterium that exhibits aerobic respiration and is classified as a heterotroph. This microbe derives its energy from organic compounds, reflecting its adaptation to environments where organic matter is available. The Gram-negative classification indicates that C. flavus possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria and may influence its interactions with the surrounding environment.↵↵The aerobic nature of C. flavus suggests that it requires oxygen for its metabolic processes, positioning it within ecosystems where oxygen is readily present, such as soil or aquatic environments. The ability to utilize organic carbon sources could enable C. flavus to play a role in nutrient cycling, particularly in the decomposition of organic materials, thereby contributing to soil health and fertility.↵↵Further investigation into the specific metabolic pathways utilized by C. flavus may reveal insights into its ecological role and potential applications in bioremediation or agriculture. Understanding its interactions with other microbial communities could also shed light on the dynamics of microbial ecosystems, particularly in relation to organic matter degradation and nutrient recycling." Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus Gram-negative ovoid non-motile aerobic heterotroph 497964 ABVL00000000.1 Bac0003314 Gloeothece verrucosa PCC 7822 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Gloeothece Gloeothece verrucosa 497965 NC_014504.1 Bac0003315 Cellvibrio japonicus Ueda107 "Cellvibrio japonicus (Strain Ueda107) is an aerobic Gram-negative saprophytic soil bacterium that was isolated from Japanese soil in 1952 and named Pseudomonas fluorescens subsp. cellulosa. Recent studies however demonstrated that C. japonicus is not a member of the genus Pseudomonas but is closely related to Cellvibrio mixtus, and hence the bacterium was renamed. C. japonicus represents an excellent system for studying the mechanism of plant cell wall degradation in a Gram-negative, non-cellulosomic saprophyte. It contains the complete repertoire of enzymes (glycoside hydrolases, lyases and esterases) required to degrade plant cell-wall and storage polysaccharides. It degrades all of the major plant cell wall polysaccharides including crystalline cellulose, mannan and xylan and is able to grow on media when these polysaccharides are the sole carbon and energy source. Unlike anaerobic plant cell wall degrading organisms, the C. japonicus enzymes that target polysaccharides, which are integral to the plant cell wall, are fully secreted into the culture media and do not assembly into large multienzyme cellulosome-like complexes. Approximately one third of these putative proteins are predicted to contain often multiple non-catalytic carbohydrate binding modules (CBMs). It increases catalytic activity by reducing the substrate accessibility problem. The variation in the portfolio of CBMs appended to these hydrolytic enzymes may impact upon the carbohydrate targeting of these biocatalysts and thus influence their substrate specificity. All the predicted plant cell-wall degrading enzymes contain signal peptides and are thus extra-cytoplasmic. The genome sequence of C. japonicus reveals a remarkable similarity between the plant cell-wall degrading apparatus of C. japonicus and that of the marine bacterium Saccharophagus degradans. Plant cell-wall degrading enzymes are widely used in the biotechnology sector for the production of detergents, paper, textiles, animal and human foods, however, the most important application of these biocatalysts is in the production of renewable biofuels. Therefore, the discovery of new and more efficient plant cell-wall degrading enzymes can potentially have numerous and important biotechnology applications. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrio Cellvibrio japonicus Ueda107 Negative Rod Yes 1 2 Aerobe organotroph; chemotroph Mesophilic Terrestrial Free living non-spore-forming No 498211 NC_010995.1 Bac0003316 Clostridium botulinum B1 str. Okra str. okra "Clostridium botulinum B1 str. Okra is a Gram-positive, rod-shaped bacterium that typically exhibits a versatile cellular arrangement, occurring in pairs, singles, or chains. This strain thrives optimally at 37.0°C, reflecting its adaptation to warm environments. As a chemoorganotroph, C. botulinum B1 str. Okra utilizes organic compounds as its energy source, a characteristic that underscores its metabolic versatility. Notably, this microbe is classified as an anaerobe, meaning it primarily thrives in environments devoid of oxygen.↵↵The habitat of C. botulinum B1 str. Okra is diverse, indicating its ability to colonize various ecological niches. This adaptability may contribute to its survival and persistence in different environments, potentially influencing its interactions with other microorganisms and its role within microbial communities. Understanding the ecological dynamics of this strain could provide insights into its behavior in both natural and engineered ecosystems, particularly considering the implications of its metabolic processes in nutrient cycling and its potential interactions with other anaerobic microbes." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 498213 NC_010379.1 Bac0003317 Clostridium botulinum A3 str. Loch Maree "Clostridium botulinum A3 str. Loch Maree is a Gram-positive, rod-shaped bacterium classified as an obligate anaerobe that thrives in environments devoid of oxygen. This pathogen prefers mesophilic temperatures, generally favoring growth within the temperature range of 20-37°C. As a chemoheterotroph, it derives energy from the organic compounds in its environment, primarily by fermenting sugars and amino acids.This strain is part of a larger group of Clostridium botulinum, which are predominantly found in soil, aquatic sediments, and the intestinal tracts of animals. Due to its anaerobic nature, C. botulinum A3 str. Loch Maree is often isolated from sealed or low-oxygen environments, such as improperly canned foods or preserved products, where it can produce potent neurotoxins, leading to the serious illness botulism in humans and animals.The bacterium's pathogenicity can be attributed to the botulinum toxin it produces, which is one of the most lethal substances known. The neurotoxin inhibits acetylcholine release at neuromuscular junctions, causing paralysis and potentially fatal respiratory failure.Apart from its clinical significance, C. botulinum A3 str. Loch Maree has garnered attention in the field of biotechnology. Research is being conducted into the therapeutic applications of its neurotoxins for various medical conditions, including chronic pain, muscle spasticity, and cosmetic treatments, such as reducing the appearance of wrinkles. Additionally, its ability to degrade organic matter makes it a subject of study in waste management and bioremediation efforts." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Loch Maree Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Pairs - Singles - Chains Sporulating Yes 498214 NC_010520.1 Bac0003318 Edwardsiella piscicida "Edwardsiella piscicida is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This non-sporulating microbe has been identified in various aquatic environments, indicating its capacity to thrive in multiple habitats. The ability to adapt to both aerobic and anaerobic conditions suggests that E. piscicida can utilize diverse metabolic pathways, allowing it to survive and proliferate in fluctuating environmental oxygen levels.↵↵As a member of the Enterobacteriaceae family, E. piscicida may play a significant role in aquatic ecosystems, particularly in nutrient cycling and interactions with other microorganisms. Its presence in different habitats highlights its potential ecological versatility. This characteristic could suggest a role in the degradation of organic matter or in the competition for resources with other microbial communities.↵↵The adaptable nature of E. piscicida, combined with its non-sporulating trait, points to a strategy of maintaining metabolic activity in changing environments rather than relying on sporulation for survival. This trait could be advantageous in environments where conditions may rapidly shift, allowing the organism to respond quickly to changes in nutrient availability or oxygen levels. Overall, E. piscicida exemplifies the ecological significance of facultative anaerobes in aquatic ecosystems, contributing to microbial diversity and metabolic processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella piscicida Negative Rod No 1 2 Facultative Mesophilic Multiple Free living Nonsporulating 498217 NC_013509.1 Bac0003319 Borreliella burgdorferi 64b "Borreliella burgdorferi 64b is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and nonsporulating nature. This organism is primarily associated with hosts, indicating its reliance on specific biological environments for survival and proliferation. ↵↵As a microaerophilic bacterium, B. burgdorferi 64b thrives in low-oxygen conditions, which may reflect its adaptations to the unique microenvironments within its host. The absence of sporulation suggests that this microbe does not produce spores as a survival strategy, possibly limiting its resilience outside of host-associated habitats. Instead, it likely employs other mechanisms to maintain viability and replicate within the host's internal milieu.↵↵Understanding the specific habitat preferences and physiological traits of Borreliella burgdorferi 64b can provide insights into its ecological role and interactions with host organisms. The reliance on microaerophilic conditions may influence its distribution and the nature of its relationships with potential hosts or vectors, underscoring the importance of oxygen levels in the environments it inhabits. This highlights the intricate balance between microbial life and its ecological niches, where oxygen availability plays a critical role in shaping microbial diversity and function within host-associated systems." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella burgdorferi Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Nonsporulating 498740 NC_012110.1 Bac0003320 Borreliella finlandensis str. SV1 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella [Borrelia] finlandensis 498741 NC_012239.1 Bac0003321 Borreliella spielmanii A14S Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella spielmanii 498742 NC_012200.1 Bac0003322 Borreliella garinii PBr Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella garinii 498743 NC_011859.1 Bac0003323 Heliomicrobium modesticaldum Ice1 "Heliomicrobium modesticaldum Ice1 is a Gram-negative, rod-shaped bacterium characterized as a photosynthetic anaerobe that exhibits sporulation. This organism thrives optimally at a temperature of 50.0°C, indicative of its adaptation to thermophilic environments. As a phototroph, H. modesticaldum Ice1 utilizes light as its primary energy source, which positions it within microbial communities that harness solar energy, particularly in environments where light penetrates at elevated temperatures.↵↵The sporulating capability of H. modesticaldum Ice1 may confer advantages in survival during unfavorable conditions, allowing it to withstand periods of nutrient scarcity or environmental stress. Its anaerobic metabolism suggests a niche in habitats where oxygen is limited or absent, potentially facilitating its role in biogeochemical cycles, particularly in thermally stratified aquatic systems or geothermal environments.↵↵This microbe's ability to photosynthesize in anaerobic conditions may contribute to unique ecological interactions, such as supporting microbial mats where light and anoxic conditions coexist. Moreover, its presence in diverse habitats underscores its ecological versatility, hinting at its potential significance in shaping microbial communities and contributing to nutrient cycling in extreme environments. Overall, Heliomicrobium modesticaldum Ice1 exemplifies the remarkable adaptations of microorganisms to thrive in specific ecological niches where traditional metabolic pathways are challenged." Bacillati Bacillota Clostridia Eubacteriales Heliobacteriaceae Heliomicrobium Heliomicrobium modesticaldum Negative Rod Yes 1 1 Anaerobe 50 Phototroph - Photosynthetic Thermophilic Multiple Free living Sporulating 498761 NC_010337.2 Bac0003324 Candidatus Korarchaeum cryptofilum "*Candidatus Korarchaeum cryptofilum* is a filamentous, anaerobic archaeon characterized by its negative Gram staining. This microbe is known to inhabit specialized environments, although specific habitat details are limited. Its filamentous morphology may play a role in its adaptation to such specialized niches, potentially facilitating interactions with other microbial communities or substrates that are characteristic of these environments.↵↵As an anaerobe, *Candidatus Korarchaeum cryptofilum* thrives in oxygen-depleted conditions, which are often found in environments such as hot springs or deep-sea hydrothermal vent systems. The unique traits of this archaeon suggest it may engage in metabolic processes that contribute to the biogeochemical cycling of elements in its habitat, although specific metabolic pathways have not been detailed in current literature. ↵↵The ecological role of *Candidatus Korarchaeum cryptofilum* remains an area of ongoing research, but its filamentous structure may imply a potential for forming complex biofilms or interacting synergistically with other microorganisms in its anaerobic niche. Understanding the specific ecological contributions of this archaeon could provide insights into the dynamics of microbial communities in extreme environments, where oxygen is limited and diverse metabolic strategies are essential for survival." Thermoproteati Thermoproteota Candidatus Korarchaeia Candidatus Korarchaeales Candidatus Korarchaeaceae Candidatus Korarchaeum Candidatus Korarchaeum cryptofilum Negative Filamentous Anaerobic Thermophilic Specialized Free living 498846 RCOR00000000.1 Bac0003325 Syntrophaceticus schinkii str. sp3 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacterales Family III. Incertae Sedis Syntrophaceticus Syntrophaceticus schinkii anaerobic 499207 CDRZ00000000.1 Bac0003326 Dietzia timorensis "Dietzia timorensis is a Gram-positive, aerobic bacterium characterized by its rod-shaped morphology. This microbe belongs to the genus Dietzia, which is known for its diverse metabolic capabilities and natural habitat preferences. As an aerobic organism, Dietzia timorensis requires oxygen for its growth and metabolism, suggesting a potential role in environments where oxygen is readily available. ↵↵The Gram-positive nature of Dietzia timorensis indicates a thick peptidoglycan layer in its cell wall, which is a distinguishing feature of this group of bacteria. This structural characteristic may confer certain advantages, such as increased resistance to environmental stresses. ↵↵The ecological versatility of Dietzia species, including D. timorensis, often allows them to thrive in a variety of environments, though specific ecological niches or interactions for this species have not been detailed. Understanding the metabolic pathways and potential biotechnological applications of Dietzia timorensis could provide insights into its role in natural ecosystems, particularly in biogeochemical cycles. Moreover, its aerobic nature may implicate it in processes such as biodegradation and nutrient cycling in oxygen-rich habitats. ↵↵Overall, Dietzia timorensis exemplifies the complexity and adaptability of microbial life, highlighting the need for further investigation to unravel its ecological significance and potential applications in environmental microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia timorensis Gram-positive rod non-motile aerobic 499555 NZ_CP015961.1 Bac0003327 Erythrobacter sp. AP23 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. AP23 499656 LNBY00000000.1 Bac0003328 Dyella marensis "Dyella marensis is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism, thriving optimally at a temperature of 32.0°C. This species belongs to the broader class of bacteria characterized by their rod-like morphology and oxygen-dependent respiration, which suggests a potential adaptability to environments with sufficient oxygen availability. ↵↵The Gram-negative nature of Dyella marensis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that typically confers resistance to certain antibiotics and influences its interaction with the surrounding environment. The optimal growth temperature of 32.0°C suggests that Dyella marensis may inhabit moderate thermal niches, which could include various aquatic environments or soils where temperatures remain stable. ↵↵Given its aerobic requirement, Dyella marensis likely plays a role in biogeochemical cycles, particularly those involving carbon and nitrogen, as aerobic bacteria are essential for the degradation of organic matter and nutrient cycling in ecosystems. This bacterium's metabolic characteristics may also suggest potential applications in bioremediation strategies, where aerobic microorganisms are employed to degrade pollutants in oxygen-rich environments. Thus, Dyella marensis exemplifies a group of microorganisms that contribute significantly to ecosystem dynamics and nutrient recycling processes in their respective habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella marensis Gram-negative rod aerobic 32 mesophilic 500610 FONH00000000.1 Bac0003329 Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 "Bifidobacterium bifidum ATCC 29521 (also designated as JCM 1255 and DSM 20456) is a Gram-positive, non-sporulating, rod-shaped bacterium that is classified as an anaerobe, thriving in oxygen-depleted environments. This species is primarily associated with the gastrointestinal tract of various hosts, notably in humans, where it contributes to the complex microbiota. Bifidobacterium bifidum plays a crucial role in the digestion of dietary fibers, producing beneficial short-chain fatty acids through fermentation processes.↵↵As a member of the Bifidobacterium genus, B. bifidum is known for its ability to metabolize a wide range of carbohydrates, which supports its growth in the human gut and may influence gut health. Its presence is often linked to a balanced gut microbiome, and it has been studied for its potential probiotic benefits. The bacterium's anaerobic metabolism allows it to thrive in the intestinal environment, where it can coexist with other microbial species while contributing to the maintenance of gut homeostasis.↵↵Research indicates that B. bifidum may play a role in modulating the immune response and reinforcing the intestinal barrier, which adds to its significance in gut health. Its adaptation to host-associated environments highlights the intricate relationships between gut microbiota and host health, suggesting that B. bifidum may be a key player in promoting overall well-being through its metabolic activities and interactions within the gut ecosystem." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 500634 AWSW00000000.1 Bac0003330 Nocardiopsis sinuspersici str. UTMC102 "Nocardiopsis sinuspersici strain UTMC102 is a Gram-positive, rod-shaped bacterium characterized by its spore-forming ability and aerobic metabolism. This microorganism thrives at an optimal temperature of 29.0°C, highlighting its preference for moderate environmental conditions. As a member of the Nocardiopsis genus, it is likely to possess features typical of actinobacteria, including the production of bioactive secondary metabolites, which may have implications for biotechnological applications.↵↵The spore-forming capability of N. sinuspersici str. UTMC102 suggests an adaptation mechanism to withstand adverse environmental conditions, allowing it to persist in various habitats. Its aerobic nature indicates that it requires oxygen for growth, which may influence its ecological niche and interactions with other microorganisms in its environment. ↵↵This strain’s specific temperature preference and aerobic lifestyle may position it within specialized ecosystems, such as soil or decaying organic matter, where it can contribute to nutrient cycling and organic matter degradation. The understanding of Nocardiopsis sinuspersici str. UTMC102's traits not only enhances our knowledge of microbial diversity but also underscores the potential for discovering novel compounds with applications in medicine and agriculture from this and similar microorganisms." Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis sinuspersici Gram-positive rod aerobic 29 mesophilic spore-forming 501010 MCOK00000000.1 Bac0003331 Citreicella sp. SE45 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Citreicella Citreicella sp. SE45 501479 ACNW00000000.1 Bac0003332 Butyricicoccus pullicaecorum "Butyricicoccus pullicaecorum is a Gram-positive, rod-shaped bacterium that thrives in anaerobic conditions, exhibiting a preference for mesophilic temperatures (20-45°C). This microbe is classified as a chemoheterotroph, relying on organic compounds for energy and carbon sources. Predominantly found in the intestines of humans and various animal species, it plays a significant role in the gut microbiome, particularly in relation to digestion and metabolism. As a Gram-positive organism, Butyricicoccus pullicaecorum possesses a thick peptidoglycan layer in its cell wall, which not only provides structural integrity but also aids in the organism’s ability to survive in the complex and competitive environment of the gastrointestinal tract. Its rod shape enhances its motility, facilitating movement through the viscous gut contents. The mesophilic temperature preference of this microbe indicates its adaptation to the warm environment typical of the intestines, where it thrives alongside a diverse community of other microorganisms. As a chemoheterotroph, Butyricicoccus pullicaecorum breaks down a variety of carbohydrates and proteins, producing short-chain fatty acids such as butyrate, which is vital for colon health and serves as an energy source for colonocytes. The production of butyrate has been linked to anti-inflammatory effects and the maintenance of gut barrier function. Moreover, Butyricicoccus pullicaecorum's ability to function as an obligate anaerobe ensures it flourishes in low-oxygen environments, while its role in the gut highlights its importance in maintaining a healthy microbiome balance. This microbe is also under investigation for its potential therapeutic effects on metabolic diseases and gut-related disorders, demonstrating its significance beyond just digestive processes." Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus pullicaecorum Positive Cocci Facultative anaerobe faeces 501571 NFKK00000000.1 Bac0003333 Thalassospira sp. MCCC 1A01148 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira sp. MCCC 1A01148 501834 LPVZ00000000.1 Bac0003334 Thalassospira sp. MCCC 1A02898 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira sp. MCCC 1A02898 501868 LPXK00000000.1 Bac0003335 Aurantiacibacter gangjinensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter gangjinensis 502682 NZ_CP018098.1 Bac0003336 Aurantiacibacter gangjinensis str. K7-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter gangjinensis 502682 LBHC00000000.1 Bac0003337 Spirosoma linguale DSM 74 "Spirosoma linguale DSM 74 is a gram-negative, spiral-shaped bacterium that thrives optimally at mesophilic temperatures, is classified as a chemoheterotroph, and functions as a facultative anaerobe. This microorganism is found in a variety of environmental niches, including the human oral cavity; its presence reflects the dynamic microbial ecosystem that exists in and on human bodies.The gram-negative nature of Spirosoma linguale indicates that it has a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contributes to its distinctive staining characteristics and plays a vital role in its interaction with host organisms. Its spiral morphology allows for increased motility, which is advantageous for navigating through viscous environments such as mucosal surfaces. As a mesophilic organism, Spirosoma linguale exhibits growth preferences that align with moderate temperature ranges, typically between 20°C and 45°C. This temperature adaptability enables it to thrive in various habitats, aligning with the thermal conditions of the human oral cavity, which is often subject to fluctuating temperatures. Being a chemoheterotroph, Spirosoma linguale derives its energy from organic compounds, predominantly found in the microbial communities of the mouth. As a facultative anaerobe, it can grow in both the presence and absence of oxygen, allowing it to exploit diverse ecological niches and adjust its metabolic pathways depending on environmental conditions. A notable aspect of Spirosoma linguale is its potential role in oral health. Studies suggest that it may influence the balance of oral microbiota, possibly impacting conditions such as dental caries and periodontal disease. Its unique morphology and metabolic capabilities make it a subject of interest for researchers exploring microbial ecology and its implications for human health." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma linguale DSM 74 Negative Spirilla No 1 2 Aerobe 20 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating No 504472 NC_013734.1 Bac0003338 Corynebacterium urealyticum DSM 7109 "Bacteria from the genus Corynebacterium are Gram-positive, nonmotile rods. C.urealyticum is a strictly aerobic, lipid-requiring, urealytic bacterium of the human skin flora that causes urinary tract infections; strain DSM 7109 was recovered from a patient with alkaline-encrusted cystitis. Metabolic analysis of the lipid-requiring phenotype revealed the absence of a fatty acid synthase gene and the presence of a beta-oxidation pathway along with a large repertoire of auxillary genes for the degradation of exogenous fatty acids. A urease locus may play a pivotal role in virulence of C. urealyticum by the alkalinization of human urine and the formation of struvite stones. Multidrug resistance in DSM 7109 is mediated by transposable elements, conferring resistances to macrolides, lincosamides, ketolides, aminoglycosides, chloramphenicol, and tetracycline (modified from PubMed 18367281). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum DSM 7109 Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 504474 NC_010545.1 Bac0003339 Jejuia pallidilutea str. JCM 19301 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Jejuia Jejuia pallidilutea 504487 BBNR00000000.1 Bac0003340 Meiothermus ruber DSM 1279 "Meiothermus ruber DSM 1279. Meiothermus ruber DSM 1279, formerly Thermus ruber DSM 1279, was isolated from a hot spring. This strain is the type strain and will be used for comparative analysis. (NCBI BioProject: bp_list[1])" Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus ruber DSM 1279 Positive Rod No 1 1 Aerobic 50 Thermophilic Specialized Free living Nonsporulating No 504728 NC_021081.1 Bac0003341 Actinokineospora alba "Actinokineospora alba is a Gram-positive, aerobic bacterium recognized for its ability to form spores. This organism thrives optimally at a temperature of 29.0°C, which suggests a preference for moderate warmth in its environmental niche. The capability of A. alba to produce spores is particularly noteworthy, as this trait enables the bacterium to endure adverse conditions and facilitates its dispersion in various habitats.↵↵The Gram-positive nature of A. alba indicates a robust cell wall structure, primarily composed of peptidoglycan, which is characteristic of this group of bacteria. Such structural integrity may contribute to its survival in diverse environments, as well as its interaction with other microorganisms. The aerobic requirement highlights its dependence on oxygen for metabolic processes, suggesting that it may inhabit well-aerated environments where it can efficiently utilize available oxygen for growth and energy production.↵↵Given its spore-forming ability and specific temperature preferences, A. alba may play a significant role in nutrient cycling within its ecosystem. The sporulation process could allow it to survive periods of environmental stress, potentially influencing microbial community dynamics by serving as a reservoir of genetic diversity and metabolic potential during unfavorable conditions. This characteristic positions A. alba as a distinct player in ecological interactions, possibly contributing to the resilience of microbial communities in its native habitats." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora alba Gram-positive aerobic 29 mesophilic spore-forming 504798 FNJB00000000.1 Bac0003342 Afipia carboxidovorans OM5 "Afipia carboxidovorans OM5 is a Gram-negative, rod-shaped bacterium characterized by its ability to metabolize carbon monoxide as a chemolithoautotrophic energy source. This microbe thrives in diverse habitats, which suggests a remarkable adaptability to various environmental conditions. As an aerobe, A. carboxidovorans OM5 requires oxygen for growth, indicating its reliance on aerobic metabolic pathways to sustain its energy demands.↵↵The chemolithoautotrophic nature of A. carboxidovorans OM5 positions it uniquely within microbial communities, as it can utilize inorganic compounds for energy while fixing carbon dioxide for biomass production. This metabolic strategy not only allows it to occupy ecological niches where organic carbon may be limited but also contributes to the cycling of carbon and other nutrients, potentially influencing local ecosystem dynamics.↵↵Furthermore, the presence of A. carboxidovorans OM5 in multiple habitats raises intriguing questions about its ecological roles and interactions with other microbial species. Its capacity to utilize carbon monoxide may also suggest a potential involvement in biogeochemical cycles, particularly in environments where this gas is prevalent, such as in the aftermath of combustion processes. Understanding the specific contributions of A. carboxidovorans OM5 to its ecosystems could provide insights into microbial responses to environmental changes and the overall functionality of microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia carboxidovorans Negative Rod Yes 1 2 Aerobe Chemolithoautotroph Mesophilic Multiple Free living 504832 NC_015685.1 Bac0003343 Malaciobacter marinus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus 505249 FUYO00000000.1 Bac0003344 Chelonobacter oris str. 1662 "Chelonobacter oris str. 1662 is a Gram-negative, rod-shaped bacterium. This morphological classification indicates that the organism possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of Gram-negative bacteria. The rod shape suggests a potential for motility and an arrangement that may influence its ecological interactions. ↵↵The specific traits of Chelonobacter oris str. 1662 contribute to its ability to inhabit particular niches, likely within oral environments, as suggested by its species designation. While the exact ecological roles and metabolic capabilities of this strain remain to be elucidated, the characteristics associated with Gram-negative bacteria often include diverse metabolic pathways and potential interactions with other microbial communities.↵↵Understanding the traits of Chelonobacter oris str. 1662 can provide insights into microbial dynamics within its habitat. Given its Gram-negative status and rod morphology, it may play a role in the degradation of organic materials or contribute to the cycling of nutrients in its environment. Future research could explore its specific interactions with other microorganisms, as well as its potential contributions to oral microbiome diversity and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Chelonobacter Chelonobacter oris Gram-negative rod non-motile 505317 JSUM00000000.1 Bac0003345 Gallibacterium salpingitidis Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium salpingitidis 505341 JTJT00000000.1 Bac0003346 Gallibacterium genomosp. 3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium genomosp. 3 505345 JTJR00000000.1 Bac0003347 Roseovarius halotolerans "Roseovarius halotolerans is a Gram-negative, rod-shaped bacterium that exhibits a notable tolerance to high salt concentrations while thriving under aerobic conditions. This microbe has an optimal growth temperature of 37.0 °C, indicating a preference for mesophilic environments, which is typical for many marine bacteria. ↵↵The Gram-negative cell wall structure of R. halotolerans is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various saline habitats. Its rod shape is indicative of a morphology that may enhance its motility and nutrient acquisition in aquatic environments. ↵↵The ability of R. halotolerans to thrive in high-salinity conditions suggests that it plays a significant role in the biogeochemical cycling of organic matter in marine ecosystems, particularly in areas with fluctuating salinity levels. This adaptability may also provide insights into the mechanisms of osmotic regulation employed by halotolerant bacteria, which could have implications for understanding microbial life in extreme environments. Overall, R. halotolerans exemplifies a specialized adaptation to its ecological niche, making it a subject of interest for studies on microbial resilience and diversity in marine systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius halotolerans Gram-negative rod non-motile aerobic 37 mesophilic 505353 FWFU00000000.1 Bac0003348 Ureaplasma parvum serovar 3 str. ATCC 27815 "Gram-negative staining, nonmotile, microaerophilic Mollicute. Round or coccobacillary shaped. Occurs predominantly in the human urogenital tract with less frequent apparitions in the mouth or respiratory tract. It is usually a commensal organism, however it can become an opportunistic pathogen. Significant cause of adverse pregnancy outcome, neonatal infections and possibly male infertility. Hydrolyzes urea with the production of ammonia. Like all mycoplasmas, Ureaplasma does not make a cell wall. (EBI Integr8)" Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma parvum serovar 3 Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Homo sapiens Singles Yes 505682 NC_010503.1 Bac0003349 Rheinheimera sp. A13L Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sp. A13L 506534 AFHI00000000.1 Bac0003350 Lactobacillus taiwanensis "Lactobacillus taiwanensis is a Gram-positive, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and exhibits microaerophilic growth characteristics. This organism is part of the Lactobacillus genus, which is renowned for its role in fermentation processes and its presence in various environments, particularly in fermented foods and the gastrointestinal tracts of humans and animals.↵↵The microaerophilic nature of L. taiwanensis suggests that it requires lower levels of oxygen for optimal growth compared to atmospheric concentrations, a trait that may influence its ecological niche and interactions with other microbial communities. This characteristic, along with its rod shape, positions L. taiwanensis as a potential participant in complex microbial ecosystems where oxygen levels fluctuate, such as in fermented products or specific intestinal environments.↵↵Furthermore, the optimal growth temperature of 37.0°C indicates that L. taiwanensis may be well-adapted to host-associated environments, where it could contribute to the fermentation of carbohydrates and the production of metabolites beneficial for host health. Understanding the role of L. taiwanensis in its ecological context may provide insights into its potential applications in food science and probiotics, highlighting its relevance in both microbiological research and industrial processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus taiwanensis Gram-positive rod non-motile microaerophile 37 mesophilic non-spore-forming 508451 NGNX00000000.1 Bac0003351 Bradyrhizobium genosp. SA-3 str. RP7b Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium genosp. SA-3 508868 PSRT00000000.1 Bac0003352 Acinetobacter baumannii AYE "Acinetobacter baumannii AYE is a gram-negative, rod-shaped bacterium that belongs to the genus Acinetobacter. It is classified as a mesophilic microbe, thriving optimally at moderate temperatures, typically around 35-37°C. This organism is a heterotroph, meaning it derives its energy from organic compounds found in its environment. A. baumannii AYE is primarily found in healthcare settings, colonizing various body sites, including the skin, respiratory tract, and sometimes the gastrointestinal tract, where it can exist as part of the normal flora. The gram-negative cell wall structure of A. baumannii AYE is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides (LPS). This unique structure contributes to its resilience against many antibiotics, making it a notable pathogen in clinical environments, particularly among immunocompromised patients. A. baumannii AYE is categorized as a facultative anaerobe, allowing it to adapt to varying oxygen levels. This adaptability enables it to thrive in both aerobic and anaerobic environments, further enhancing its survival in hospital settings where oxygen levels can fluctuate. One of the most concerning attributes of Acinetobacter baumannii AYE is its notorious ability to develop multidrug resistance. This resistance is often attributed to factors such as the presence of efflux pumps, enzyme production to inactivate antibiotics, and the ability to acquire resistance genes through horizontal gene transfer. This microbe has been implicated in outbreaks of nosocomial infections, especially ventilator-associated pneumonia and bloodstream infections, posing a significant challenge to infection control and treatment strategies in healthcare facilities. Its resilience, coupled with its potential for rapid transmission, highlights the importance of rigorous surveillance and infection prevention measures in combating this pathogen." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii AYE Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Aquatic Free living Homo sapiens Singles Nonsporulating Yes 509173 NC_010402.1 Bac0003353 Caulobacter segnis ATCC 21756 Caulobacter segnis strain ATCC 21756 is a prostheca-less bacterium belonging to the genus Caulobacter; it was isolated from soil although its habitat is considered to be fresh-water. The absence of a stalk in this genus makes this an interesting bacterium to study. (EBI Integr8) Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter segnis ATCC 21756 Negative Rod Yes 1 2 Aerobe Mesophilic Fresh water Free living Singles No 509190 NC_014100.1 Bac0003354 Thermoanaerobacter ethanolicus JW 200 "Thermoanaerobacter ethanolicus JW 200 is a rod-shaped, nonsporulating bacterium that thrives in anaerobic environments, with an optimal growth temperature of 70.0 °C. As a chemoheterotroph, this microbe utilizes organic compounds as its energy source, which supports its metabolic activities in various habitats. ↵↵The organism's adaptation to high-temperature environments suggests a specialized role in biogeochemical cycles, particularly in the degradation of organic materials in heated anaerobic conditions. The ability to grow optimally at 70.0 °C may present opportunities for industrial applications, particularly in biofuel production, where its metabolic pathways could be harnessed for efficient conversion of biomass into ethanol. ↵↵Research on Thermoanaerobacter ethanolicus JW 200 could provide insights into the metabolic versatility of thermophilic anaerobes and their potential contributions to ecological processes in high-temperature environments. Such understanding may also inform biotechnological advancements in renewable energy." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter ethanolicus Rod No 1 Anaerobic 70 Chemoheterotroph Thermophilic Multiple Nonsporulating 509192 AEYS00000000.1 Bac0003355 Thermoanaerobacter brockii subsp. finnii Ako-1 "Rising global demand for energy coupled with recent supply-side instability in the petroleum market have prompted renewed calls for the development of alternative fuel sources to reduce America's dependence on foreign oil. One such alternative, bioproduced ethanol derived from cellulosic plant materials is a primary alternative for immediate and long-term replacement of fossil fuels. Clostridia are chosen for their proven ability to degrade complex cellulosic polymers, to ferment a variety of cellulosic degradation byproducts to ethanol and to produce beneficial industrial compounds in addition to ethanol. Thermoanaerobacter brockii subsp. finnii (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) is an anaerobic Gram-positive bacterium isolated from lake sediment sludge in Africa. It is an efficient producer of ethanol from xylose. Ethanol is the major end product of fermentation from glucose and xylose, but switches to acetate under thiosulfate-respiring conditions. Respiration of thiosulfate is accompanied by increased growth rates and yields, suggesting an increased rate of substrate-level phosphorylation. In addition, thiosulfate reduction can be linked to H2 oxidation which serves to alleviate the toxic effects of H2 concentrations. As such, thiosulfate- reducing species may play a significant role in carbon flux in sulfidogenic environments. (Adapted from: http://genome.jgi-psf.org/thebr/thebr.home.html). (EBI Integr8)" Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter brockii Ako-1 Positive Bacilli Yes 1 1 Anaerobic 65 Thermophilic Aquatic Free living Pairs- Singles Nonsporulating No 509193 NC_014964.1 Bac0003356 Pedobacter sp. V48 "Pedobacter sp. V48 is a Gram-negative bacterium primarily found in sandy environments, specifically within sand microcosms. This microbe is part of the genus Pedobacter, which is typically characterized by its distinctive morphological and biochemical properties. Gram-negative bacteria are known for their complex cell wall structure, which contributes to their resilience in diverse habitats.↵↵The habitat of Pedobacter sp. V48 suggests a potential role in the biogeochemical processes within sandy ecosystems, where microorganisms can significantly influence nutrient cycling and organic matter decomposition. The presence of this bacterium in sand microcosms indicates its adaptability to microhabitats that may experience fluctuations in moisture and nutrient availability. ↵↵Understanding the functional capabilities of Pedobacter sp. V48 within its habitat could shed light on its ecological roles, such as its involvement in the degradation of organic materials or interactions with other microbial species. The study of this bacterium may provide insights into the microbial community dynamics in sandy soils and their contributions to ecosystem health and stability. As such, Pedobacter sp. V48 serves as an intriguing subject for further research into the ecological significance of microorganisms in terrestrial environments." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. V48 negative sand; sand microcosms 509635 AWRU00000000.1 Bac0003357 Oceanimonas sp. GK1 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Oceanimonas Oceanimonas sp. GK1 511062 NC_016746.1 Bac0003358 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2. Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 was isolated from a single cell of the protist Pseudotrichonympha grassii which resides in the termite gut. The genome sequence of this organism will provide information on the proteins involved in endosymbiosis. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Candidatus Azobacteroides Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 Negative Mesophilic Specialized Pseudotrichonympha grassii 511995 NC_011565.1 Bac0003359 Mycolicibacter heraklionensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter heraklionensis 512402 LZLB00000000.1 Bac0003360 Mycobacterium heraklionense str. Davo "Mycobacterium heraklionense str. Davo is a spherical, non-spore-forming bacterium that demonstrates optimal growth at a temperature of 32.0°C. This mesophilic organism is characterized by its robust cell wall structure, typical of the Mycobacterium genus, which may contribute to its resilience in various environmental conditions. ↵↵The spherical morphology of M. heraklionense str. Davo distinguishes it from other Mycobacterium species that may exhibit different shapes, such as rods. The lack of sporulation indicates that this strain relies on other survival mechanisms in adverse conditions, rather than entering a dormant state. ↵↵Understanding the optimal growth temperature of 32.0°C is crucial for laboratory cultivation and potential biotechnological applications. This temperature aligns with the conditions often found in temperate environments, suggesting that M. heraklionense str. Davo may thrive in habitats where temperatures are moderate. ↵↵While specific ecological roles or interactions of this strain have not been detailed, its environmental preferences could point to a niche within microbiomes associated with terrestrial or aquatic ecosystems. The ability to grow at moderately warm temperatures may also imply potential involvement in nutrient cycling or interactions with other microbial communities in these habitats, highlighting its potential significance in ecological dynamics." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter heraklionensis sphere 32 mesophilic non-spore-forming 512402 LDPO00000000.1 Bac0003361 Rufibacter tibetensis str. strain 1351 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Rufibacter Rufibacter tibetensis 512763 NZ_CP012644.1 Bac0003362 Burkholderia multivorans CGD2 "Burkholderia multivorans CGD2 is a Gram-negative, nonsporulating rod-shaped bacterium that is primarily associated with host environments and requires oxygen for growth as an aerobic organism. This species is part of the genus Burkholderia, which is known for its metabolic versatility and ability to thrive in diverse ecological niches. ↵↵As a host-associated microbe, B. multivorans CGD2 may interact with the host's immune system and microbiome, potentially influencing the host's health and disease states. Its aerobic nature suggests that it is adapted to environments where oxygen is readily available, which may include various tissues or fluids within the host organism. Given the metabolic capabilities typical of the Burkholderia genus, this strain may utilize a range of organic compounds for growth, which could play a role in its ecological interactions within host systems.↵↵Understanding the specific characteristics of Burkholderia multivorans CGD2 can provide insights into its functional role in host-associated environments, particularly regarding its interactions with other microbial species and its potential influence on the host's metabolic processes. Further research into its ecological dynamics may reveal important information regarding its contributions to the overall microbiome and host health." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 513052 ACFC00000000.1 Bac0003363 Micromonospora endophytica Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora endophytica 515350 POTX00000000.1 Bac0003364 Pseudomonas yamanorum str. LBUM636 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas yamanorum 515393 NZ_CP012400.2 Bac0003365 Candidatus Riesia pediculicola USDA Riesia pediculicola USDA. Riesia pediculicola USDA will be used for comparative analysis with other insect symbiotic bacteria (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Riesia Candidatus Riesia pediculicola USDA Negative Rod Mesophilic HostAssociated Symbiotic Pediculus humanus 515618 NC_013962.1 Bac0003366 Agathobacter rectalis ATCC 33656 "Agathobacter rectalis ATCC 33656 is a Gram-positive, rod-shaped bacterium that functions as a chemoheterotroph and thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a nonsporulating organism, A. rectalis is adapted to host-associated habitats, suggesting a close relationship with its host, potentially within the gastrointestinal tract.↵↵The anaerobic nature of A. rectalis indicates its metabolic processes are optimized for environments devoid of oxygen, which is characteristic of many gut-associated microorganisms. This adaptation allows A. rectalis to play a role in the complex microbial community of the gut, where it may contribute to the fermentation of dietary fibers and other substrates, subsequently impacting host health and metabolism.↵↵The presence of A. rectalis in the gut microbiota underscores its potential role in maintaining gut homeostasis and influencing host immune responses. Further insights into its metabolic pathways and interactions with other microbial species could elucidate its contributions to gut health and disease states. Given its specific habitat and energy requirements, A. rectalis may serve as a model organism for studying anaerobic metabolism and microbial ecology in host-associated environments." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 515619 NC_012781.1 Bac0003367 Lachnospira eligens ATCC 27750 "Lachnospira eligens ATCC 27750 is a Gram-negative, rod-shaped bacterium that is classified as an anaerobe, thriving in oxygen-depleted environments. This microbe is host-associated, indicating its presence in the microbiota of living organisms, where it plays a role in the complex interactions within microbial communities.↵↵As a member of the Lachnospiraceae family, Lachnospira eligens is notable for its potential contributions to gut health and fermentation processes, although specific metabolic pathways and interactions within its host environment warrant further investigation. Its anaerobic nature suggests that it may participate in biochemical processes that are crucial for the degradation of complex carbohydrates, contributing to nutrient cycling and energy extraction in its habitat.↵↵The presence of Lachnospira eligens ATCC 27750 in the gastrointestinal tract highlights the importance of anaerobic bacteria in maintaining gut homeostasis and influencing host metabolic functions. Understanding its specific roles and interactions within the gut microbiome can provide insights into the broader implications of microbial diversity in health and disease. Exploring the functional capacities of this organism could lead to advancements in microbiome research and its applications in health sciences." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira eligens Negative Rod 1 Anaerobe Mesophilic HostAssociated Free living 515620 NC_012782.1 Bac0003368 Butyrivibrio proteoclasticus B316 "Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) is an anaerobic, polysaccharide-degrading, butyrate-forming rumen, Gram-positive bacterium isolated from the bovine rumen and with a key role in plant polysaccharide degradation. The 4.4Mb genome consists of 4 replicons; a chromosome, a chromid and two megaplasmids. The chromid is the smallest reported for all bacteria, and the first identified from the phylum Firmicutes. B. proteoclasticus devotes a large proportion of its genome to the breakdown and reassembly of complex polysaccharides and has a highly developed glycobiome when compared to other sequenced bacteria. The secretion of a range of polysaccharide-degrading enzymes which initiate the breakdown of pectin, starch and xylan, a subtilisin family protease active against plant proteins, and diverse intracellular enzymes to break down oligosaccharides constitute the degradative capability of this organism. A prominent feature of B. proteoclasticus is the presence of multiple gene clusters predicted to be involved in polysaccharide biosynthesis. Metabolic reconstruction reveals the absence of an identifiable gene for enolase, a conserved enzyme of the glycolytic pathway. This is the first report of an organism lacking an enolase. (Adapted from PMID: 20689770). (EBI Integr8)" Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio proteoclasticus B316 Positive Rod No 1 1 Anaerobic Mesophilic HostAssociated No 515622 NC_014390.1 Bac0003369 Pontibaca methylaminivorans "Pontibaca methylaminivorans is a Gram-negative, ovoid-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities. This microbe thrives optimally at a temperature of 29.0 °C, indicating a preference for moderately warm environments. Notably, P. methylaminivorans is non-spore-forming, which suggests that it relies on other survival strategies under adverse conditions rather than sporulation.↵↵The facultative nature of its oxygen requirement enables P. methylaminivorans to adapt to varying environmental oxygen levels, allowing it to occupy diverse ecological niches. This adaptability may confer advantages in dynamic habitats where oxygen availability fluctuates. While the specific ecological roles of P. methylaminivorans are not detailed in the available data, its metabolic versatility suggests a potential involvement in biogeochemical cycles, particularly those related to nitrogen and carbon, due to its capacity to utilize various substrates.↵↵In summary, the combination of its Gram-negative cell structure, ovoid morphology, and metabolic flexibility positions Pontibaca methylaminivorans as a microbe of interest for further research into its ecological contributions and potential applications in biotechnology or environmental management. Its ability to thrive in different oxygen conditions may play a significant role in the microbial community dynamics of its native habitats, potentially influencing nutrient cycling processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pontibaca Pontibaca methylaminivorans Gram-negative ovoid non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 515897 FTPS00000000.1 Bac0003370 Embleya hyalina str. NBRC 13850 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Embleya Embleya hyalina 516124 BIFH00000000.1 Bac0003371 Streptococcus pneumoniae CGSP14 "Streptococcus pneumoniae CGSP14 is a gram-positive, coccoid-shaped bacterium that thrives in a mesophilic temperature range, is categorized as a chemoheterotroph, and exhibits facultative anaerobic characteristics. This microbe is primarily found in the respiratory tract of healthy humans, colonizing the nasopharynx, but can also be present in other body sites such as the sinuses and middle ear, leading to opportunistic infections. As a gram-positive organism, S. pneumoniae possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain, appearing blue or violet under the microscope. This structural feature contributes to its virulence and ability to evade the host’s immune system. The coccoid shape facilitates its survival in various environments and enables it to form pairs or chains, aiding in colonization and transmission. S. pneumoniae is classified as a chemoheterotroph, meaning it derives its energy and carbon from organic compounds, which is critical for its survival in the nutrient-rich environments of the human respiratory tract. Its facultative anaerobic nature allows it to adapt to both aerobic and anaerobic conditions, thus thriving in different niches of the human body. One notable aspect of Streptococcus pneumoniae CGSP14 is its ability to form biofilms, particularly in the nasopharynx, which enhances its persistence and resistance to antibiotics. This capability is a significant factor in its role in causing diseases such as pneumonia, meningitis, and otitis media, especially in vulnerable populations like children and the elderly. Furthermore, the strain has been studied for its genetic diversity and resistance mechanisms, providing insights into microbial pathogenesis and public health challenges posed by antibiotic-resistant bacteria." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae CGSP14 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Homo sapiens Chains - Pairs Nonsporulating Yes 516950 NC_010582.1 Bac0003372 Stenotrophomonas chelatiphaga Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas chelatiphaga aerobic 517011 LDJK00000000.1 Bac0003373 Chlorobaculum parvum NCIB 8327 "Chlorobaculum parvum (formerly known as both Chlorobium vibrioforme subsp. thiosulfatophilum and Chlorobium limicola subsp. thiosulfatophilum) is a green sulfur bacteria. Grows as single, non-motile cells which are curved rods or vibrioid, approximately 1um wide. The photosynthetic pigments are BChl d with chlorobactene as the major carotenoid. Photoautotrophic growth occurs with sulfide, sulfur and thiosulfate as photosynthetic electron donors; molecular hydrogen may be used by some strains. In the presence of sulfide and bicarbonate, some simple organic compounds are photoassimilated. Vitamin B12 may be required for growth. Brackish water and marine bacteria that require at least 1% NaCl. This is the type strain (adapted from PubMed 12892110). (EBI Integr8)" Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum parvum NCIB 8327 Rod No 1 2 Anaerobe Photolithotroph Mesophilic Aquatic Free living Singles No 517417 NC_011027.1 Bac0003374 Chloroherpeton thalassium ATCC 35110 "Chloroherpeton thalassium is a non-filamentous, flexing and gliding green sulfur bacterium isolated from marine sources off the North East coast of the USA in the 1980s. It is an obligate phototroph, requiring CO2 and S2 for growth; some organic acids can contribute to cell carbon, and N2 may be fixed. The cells contain typical chlorosomes, and gas vesicles may be present. Bacteriochlorophyll c is the main light harvesting pigment, and a small quantity of bacteriochlorophyll a is also present. Over 80% of the carotenoid is gamma-carotene. This is the only motile green-sulfur bacterium known so far (adapted from PubMed 11536588). (EBI Integr8)" Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium ATCC 35110 Negative Rod Yes 1 2 Facultative Photosynthetic - Photolithotroph Mesophilic Aquatic Free living No 517418 NC_011026.1 Bac0003375 Pantoea sp. aB Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. aB 517433 AEDL00000000.1 Bac0003376 Bifidobacterium breve DSM 20213 = JCM 1192 "Bifidobacterium breve DSM 20213 (also known as JCM 1192) is a Gram-positive, anaerobic bacterium that belongs to the genus Bifidobacterium, which is part of the diverse microbiota found in the gastrointestinal tracts of humans and other mammals. As an anaerobe, B. breve DSM 20213 thrives in environments devoid of oxygen, suggesting its adaptation to the anaerobic conditions prevalent in the human gut. ↵↵This species is known for its beneficial role in promoting gut health and is often associated with probiotic properties. Its Gram-positive nature indicates a thick peptidoglycan layer, which may contribute to its resilience in the harsh gastrointestinal environment. Bifidobacterium breve species are recognized for their ability to ferment dietary fibers and produce short-chain fatty acids (SCFAs), which can play a crucial role in gut health by providing energy to colonocytes and influencing the composition of the gut microbiota.↵↵Given the well-documented association of Bifidobacterium species with health benefits, B. breve DSM 20213 may contribute to the modulation of gut microbiota composition, potentially enhancing the host's immune response and providing protection against gastrointestinal disorders. The unique ecological niche occupied by this microbe underscores its significance in maintaining a balanced gut environment, highlighting the importance of anaerobic bacteria in human health and microbiome research." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe 518634 ACCG00000000.2 Bac0003377 Streptomyces nanshensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nanshensis 518642 LJGY00000000.1 Bac0003378 Rhodothermus marinus DSM 4252 "Rhodothermus marinus is a thermohalophilic bacterium and is the only validly described species in the genus Rhodothermus. It is aerobic, chemoorganotrophic, has been isolated from marine habitats and grows from 54 to 77 degrees Celsius with optimal growth at 65 degrees Celsius. It grows best in 2% NaCl although growth can occur from 0.5% NaCl to over 6% NaCl. Thus it is therefore both thermophilic and slightly but strictly halophilic and can only grow in a very narrow zone in the submarine hot springs, close to their openings, determined by temperature and salt concentration as well as of content of O2 and organic material.Strain DSM 4252 (the type strain) was isolated in 1988 at 2-3m depth (at low tide) from a submarine hot spring at Reykjanes, Isafjardardjup Bay, off the south-west coast of Iceland (adapted from PMID 16075163 and J.Gen.Microbiol 134:299). Cells are 0.5 um in diameter and 2-2.5 um long, without flagella, non-spore forming and without lipid granules, although they form a slime capsule when grown in rich-media (adapted from 10.4056.sigs46736). (HAMAP: RHOM4)" Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus DSM 4252 Negative Rod No 1 2 Aerobic 65 Heterotroph Thermophilic Specialized Free living Singles Nonsporulating No 518766 NC_013501.1 Bac0003379 Halorhabdus utahensis DSM 12940 "Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) is a pleomorphic, aerobic, extremely halophilic archaeon, originally isolated from sediment of Great Salt Lake, Utah, USA. H.utahensis grows optimally at 27% (w/v) NaCl at temperatures between 17 and 55 degrees Celsius, with optimal growth occurring at 50 degrees Celsius. It is able to grow over a pH range of 5.5-8.5 at 30 degrees Celsius in presence of 27% NaCl, and its optimal pH is between 6.7 and 7.1. Only a few carbohydrates (such as glucose, xylose and fructose) supporte its growth. H.utahensis only uses a limited range of substrates for growth and is unique in its inability to utilize yeast extract or peptone for growth. The polar lipids present comprise the corresponding diether derivatives of phosphatidyl glycerol (PG), methylatedphosphatidyl glycerophosphate (MePGP), a triglycosyl glycolipid (TGD) and a sulfated triglycosyl glycolipid (S-TGD). This composition indicates that H.utahensis is a member of the family Halobacteriaceae, but is chemically distinctive from any other aerobic, halophilic species and constitutes a member of a novel taxon within this family. H.utahensis is susceptible to bacitracin and novobiocin but resistant to ampicillin, carbenicillin, chloramphenicol, erythromycin, gentamicin, kanamycin, nalidixic acid, neomycin, penicillin, polymyxins, rifampicin, streptomycin and tetracycline. (Adaptated from PMID: 10826803). (HAMAP: HALUD)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorhabdus Halorhabdus utahensis DSM 12940 Negative Rod No 1 1 Aerobic 50 Mesophilic Terrestrial Free living Nonsporulating No 519442 NC_013158.1 Bac0003380 Pseudidiomarina maritima Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina maritima 519453 FOYU00000000.1 Bac0003381 Vagococcus teuberi str. DSM 21459T "Vagococcus teuberi str. DSM 21459T is a Gram-positive, nonsporulating coccus that is primarily found in the gut of its host. This bacterium exhibits a spherical shape, which is characteristic of cocci, and its nonsporulating nature suggests a reliance on stable environmental conditions for survival. ↵↵As a gut-dwelling microbe, Vagococcus teuberi may play a role in the microbial ecosystem of its host, potentially contributing to digestive processes or influencing gut health. While specific metabolic pathways and interactions with the host microbiome remain to be elucidated, the presence of such a microbe indicates the diversity of bacterial life that can inhabit the gastrointestinal tract. ↵↵The study of Vagococcus teuberi str. DSM 21459T can provide insights into the complex relationships within gut microbiota, particularly in understanding how nonsporulating, Gram-positive cocci contribute to gut homeostasis and overall host wellbeing." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus teuberi Positive Cocci No 1 Host Gut Nonsporulating 519472 NZ_CP017268.1 Bac0003382 Brucella sp. NVSL 07-0026 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella sp. NVSL 07-0026 520448 ACXD00000000.1 Bac0003383 Brucella sp. 83/13 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella sp. 83/13 520449 ACBQ00000000.1 Bac0003384 Fervidicola ferrireducens str. Y170 "Fervidicola ferrireducens strain Y170 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This organism is characterized by its inability to form spores, which may influence its survival strategies in fluctuating environmental conditions.↵↵As a strictly anaerobic microbe, F. ferrireducens str. Y170 likely engages in metabolic processes that do not require oxygen, potentially utilizing alternative electron acceptors in its energy production pathways. The optimal growth temperature of 45.0°C suggests that this organism is thermophilic, adapting to high-temperature environments commonly found in geothermal settings or heated industrial processes.↵↵The non-spore-forming nature of F. ferrireducens str. Y170 indicates that it may have evolved mechanisms for maintaining viability in challenging conditions through other means, such as biofilm formation or metabolic dormancy. Its unique traits may allow it to play a significant role in biogeochemical cycles, particularly in environments rich in iron, where it may contribute to iron reduction processes. Such functions highlight the potential ecological importance of F. ferrireducens str. Y170 in nutrient cycling and energy flow within anaerobic ecosystems, particularly those influenced by thermal activity." Bacillati Bacillota Clostridia Thermosediminibacterales Thermosediminibacteraceae Fervidicola Fervidicola ferrireducens Gram-negative rod anaerobic 45 thermophilic non-spore-forming 520764 LOED00000000.1 Bac0003385 Methanobrevibacter smithii DSM 2374 "Methanobrevibacter smithii DSM 2374 is a Gram-positive rod-shaped archaeon that typically forms pairs and chains. This organism is known for its lithotrophic metabolism, utilizing inorganic compounds as an energy source, which is characteristic of many methanogenic archaea. M. smithii thrives optimally at a temperature of 37.0°C, suggesting a preference for environments that mirror the conditions found in the mammalian gut, where it is commonly located. As an anaerobic microbe, it does not require oxygen for its metabolic processes, allowing it to inhabit various anaerobic niches.↵↵The presence of M. smithii in diverse habitats, particularly in association with the gastrointestinal tracts of mammals, positions it as a key player in the microbiota that contributes to the fermentation processes within these environments. This archaeon is of particular interest due to its potential roles in methane production, which can impact both energy flow within ecosystems and the global carbon cycle. Understanding the specific conditions and interactions that support the growth of M. smithii may provide insights into its ecological significance, particularly in relation to its contributions to digestive processes and microbial community dynamics in anaerobic environments." Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii Positive Rod No 1 Anaerobe 37 Lithotroph Mesophilic Multiple Free living Pairs - Chains 521002 ABYV00000000.2 Bac0003386 Neisseria gonorrhoeae NCCP11945 "Neisseria gonorrhoeae NCCP11945 is a gram-negative, diplococci-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can infect various body sites in humans, including the urethra, cervix, pharynx, and rectum, making it a highly adaptable pathogen, and is an obligate aerobe. As a gram-negative bacterium, N. gonorrhoeae NCCP11945 has a unique outer membrane composition, which contributes to its virulence and ability to evade the host immune system. Its diplococci shape, typically seen in pairs, allows for efficient attachment to and invasion of host cells.The mesophilic temperature preference of N. gonorrhoeae NCCP11945 indicates that it grows best in moderate temperatures, typically between 35-37°C, which is consistent with its human host environment. As a chemoheterotroph, this microbe relies on external chemical sources for energy and carbon, which is obtained by breaking down host-derived nutrients. N. gonorrhoeae NCCP11945 can infect multiple body sites, leading to various clinical manifestations, including urethritis, cervicitis, and pharyngitis.As an obligate aerobe, N. gonorrhoeae NCCP11945 requires oxygen to grow, which is why it is typically found in areas of the body with high oxygen levels, such as the mucous membranes. The ability of N. gonorrhoeae NCCP11945 to infect and colonize different body sites is attributed to its capacity to adhere to and invade host cells, as well as its ability to evade the host immune response. N. gonorrhoeae NCCP11945 has developed resistance to multiple antibiotics, making treatment challenging, and its ability to form biofilms contributes to its persistence in the host and its transmission to new hosts." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae NCCP11945 Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Homo sapiens Singles - Pairs Nonsporulating Yes 521006 NC_011034.1 Bac0003387 Borreliella bissettii DN127 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella bissettiae 521010 NC_015919.1 Bac0003388 Borreliella bissettiae DN127 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella bissettiae 521010 NC_015903.1 Bac0003389 Limimaricola pyoseonensis "Limimaricola pyoseonensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This microbial species has an optimal growth temperature of 25.0°C, suggesting that it thrives in moderate environmental conditions. The Gram-negative classification indicates the presence of a thin peptidoglycan layer and an outer membrane, which may influence its interactions with the surrounding environment and other microorganisms.↵↵As an aerobic organism, L. pyoseonensis requires oxygen for its metabolic processes, which may position it within specific ecological niches that offer sufficient oxygen availability. The non-spore-forming characteristic suggests that this bacterium may rely on vegetative growth and other survival strategies, rather than sporulation, to endure environmental stressors.↵↵The physiological traits of L. pyoseonensis may play a crucial role in its adaptation to specific habitats, potentially influencing its interactions within microbial communities. Understanding these characteristics can provide insights into the ecological roles of this bacterium, particularly in environments where aerobic conditions prevail. Further investigation into the metabolic pathways and ecological interactions of L. pyoseonensis could reveal its contributions to biogeochemical cycles or its potential utility in biotechnological applications." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Limimaricola Limimaricola pyoseonensis Gram-negative rod aerobic 25 mesophilic non-spore-forming 521013 FNAT00000000.1 Bac0003390 Kosmotoga olearia TBF 19.5.1 "Kosmotoga olearia (strain TBF 19.5.1) is a Gram-negative bacterium isolated from an oil deposit and has a broad temperature growth range, so it is useful for comparative structural biology of thermophilic and mesophilic proteins as well as learning about oil deposit ecosystems. It has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall. (EBI Integr8)" Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Kosmotoga Kosmotoga olearia TBF 19.5.1 Negative Rod Yes 1 2 anaerobic 45 Mesophilic Aquatic Free living non-spore-forming No 521045 NC_012785.1 Bac0003391 Lancefieldella parvulum DSM 20469 "Lancefieldella parvulum DSM 20469 is a Gram-positive coccus primarily characterized by its occurrence in pairs or as single cells. This microbe is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen, which is a significant trait for its metabolism and ecological interactions. The habitat of L. parvulum is host-associated, suggesting a potential symbiotic or commensal relationship with its host organisms.↵↵The coccal shape and specific arrangement of L. parvulum may influence its interaction with other microbial species and its adaptation to the host environment. As a host-associated anaerobe, L. parvulum may play a role in the complex microbial communities found in various biological niches, such as the gastrointestinal tract of animals. The presence of anaerobic conditions in these habitats may facilitate its growth and metabolism, allowing it to contribute to the overall microbiota composition.↵↵Understanding the characteristics of L. parvulum, including its Gram-positive nature and anaerobic lifestyle, provides insights into its potential functional roles within host-associated microbiomes. Given its specialized habitat and growth conditions, L. parvulum may be involved in nutrient cycling and the maintenance of microbial balance in the ecosystems it inhabits, highlighting the intricate relationships between host organisms and their associated microbial communities." Bacillati Actinomycetota Coriobacteriia Coriobacteriales Atopobiaceae Lancefieldella Lancefieldella parvula Positive Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Pairs - Singles 521095 NC_013203.1 Bac0003392 Tsukamurella paurometabola DSM 20162 "Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) is an aerobic, weakly acid-fast, pleomorphic, Gram-positive bacterium isolated from mycetomes and ovaries of bed bugs (Cimex lectularius) and also found in soil and sludge. It is a member of the nocardioform actinomycetes and is closely related to the genus Mycobacterium. This organism has been isolated from cases of systemic infection, usually in association with other diseases. Cases of human infection with T. paurometabola are infrequent, nevertheless diagnosis rates are increasing, typically in patients with underlying predisposing factors including immunosupression, chronic pathology and indwelling foreign bodies. Thus it is a novel pathogen causing catheter-related bacteremia in patients with cancer. (Adapted from: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29399 and PMID: 1571430). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella paurometabola DSM 20162 Positive Rod No 1 1 Obligate aerobic Chemoorganotroph Mesophilic Terrestrial Free living Homo sapiens Pairs Nonsporulating Yes 521096 NC_014158.1 Bac0003393 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 "Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) is an aerobic, acidophilic and thermophilic Gram-positive bacterium, originally isolated from an acid hot spring in Yellowstone National Park, USA. It produces heat and acid stable enzymes, such as amylase and esterase, which may be important in industry. The optimum temperature for growth is 60 degrees Celsius, and the optimum pH is between 3 and 4. (Adapted from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29405). (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus acidocaldarius DSM 446 Positive Rod Yes 1 1 Aerobe 60 Chemoorganotroph Thermophilic Specialized Free living Chains Sporulating No 521098 NC_013208.1 Bac0003394 Caldicellulosiruptor bescii DSM 6725 Caldicellulosiruptor bescii DSM 6725. Caldicellulosiruptor bescii DSM 6725 is the type strain and will be used for comparative analysis. (NCBI BioProject: bp_list[1]) Bacillati Bacillota Clostridia Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor bescii DSM 6725 Positive rod Anaerobe 45 Thermophilic Specialized Free living non-spore-forming 521460 NC_012037.1 Bac0003395 Planctopirus limnophila DSM 3776 "Planctopirus limnophila DSM 3776 is a Gram-negative, nonsporulating coccus that thrives in aquatic environments and exhibits aerobic metabolism. This microbe's spherical shape is characteristic of many cocci, contributing to its identification within its ecological niche. As an aerobe, Planctopirus limnophila requires oxygen for survival and growth, indicating its adaptation to oxygen-rich habitats typically found in freshwater systems. ↵↵The presence of this organism in aquatic ecosystems suggests it may play a role in biogeochemical cycles, potentially influencing nutrient availability and microbial community dynamics. Given its specific habitat and metabolic requirements, Planctopirus limnophila may interact closely with other microorganisms in its environment, possibly contributing to processes such as organic matter decomposition or nutrient cycling. Understanding the ecological roles of microbes like Planctopirus limnophila is crucial for comprehending the complexities of aquatic ecosystems and their responses to environmental changes." Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctopirus Planctopirus limnophila Negative Cocci Yes 1 2 Aerobe Mesophilic Aquatic Free living Nonsporulating 521674 NC_014149.1 Bac0003396 Staphylococcus rostri "Staphylococcus rostri is a Gram-positive, spherical bacterium that optimally thrives at 37.0 °C and exhibits aerobic growth. This microbe is characterized by its coccoid shape, which is typical of the Staphylococcus genus. As an aerobic organism, S. rostri requires oxygen for its metabolic processes, distinguishing it from anaerobic bacteria that can grow in the absence of oxygen.↵↵The optimal growth temperature of 37.0 °C suggests a preference for conditions similar to the human body temperature, indicating a potential association with warm-blooded hosts or environments. While the specific ecological niche of S. rostri is not detailed, the traits observed in this bacterium may suggest a role in the microbiota of certain mammals, where it could contribute to the microbial community dynamics. ↵↵Unique to S. rostri is its adaptation to aerobic conditions, which may confer specific metabolic advantages in environments where oxygen is readily available. This trait could facilitate interactions with other microbial species and influence its competitive abilities within a given ecological niche. The presence of S. rostri in various environments merits further investigation to elucidate its potential roles in microbial ecosystems and its interactions with other bacteria." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus rostri Gram-positive sphere non-motile aerobic 37 mesophilic 522262 PPRF00000000.1 Bac0003397 Candidatus Accumulibacter phosphatis Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter phosphatis 522306 NC_013190.1 Bac0003398 Pleionea mediterranea str. DSM 25350 "Pleionea mediterranea str. DSM 25350 is a Gram-negative, rod-shaped bacterium known for its aerobic metabolic requirements and optimal growth at 29.0°C. This organism does not engage in sporulation, indicating a reliance on other survival strategies under environmental stress. The Gram-negative cell wall structure of P. mediterranea suggests a complex outer membrane composition, which may play a role in its interactions with surrounding microbial communities and its environment.↵↵The aerobic nature of this strain implies that it requires oxygen for growth and may be involved in processes such as organic matter degradation or nutrient cycling in its habitat. The specific temperature preference of 29.0°C indicates that P. mediterranea is likely adapted to temperate or warm environments, which may influence its ecological niche and metabolic capabilities.↵↵Given its non-spore-forming characteristic, P. mediterranea may be particularly sensitive to environmental fluctuations, relying on stable conditions for survival and growth. This trait could also suggest that it is part of a microbial community that maintains dynamic interactions with other species, potentially contributing to ecosystem functions such as nutrient exchange or symbiotic relationships. Understanding the growth requirements and characteristics of P. mediterranea can provide insights into its role within its native ecosystem and its potential applications in biotechnology or environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Pleioneaceae Pleionea Pleionea mediterranea Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 523701 QGGU00000000.1 Bac0003399 Haloferax mediterranei ATCC 33500 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax mediterranei 523841 AOLO00000000.1 Bac0003400 Methanohalophilus portucalensis FDF-1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus portucalensis 523843 JWTK00000000.1 Bac0003401 Actinomyces urogenitalis DSM 15434 "Actinomyces urogenitalis DSM 15434 is a gram-positive, rod-shaped bacterium that is classified as a facultative anaerobe, thriving at mesophilic temperatures ranging from 20°C to 45°C. As a chemoheterotroph, this microbe obtains its energy and carbon from organic compounds, which it metabolizes in various environments. A. urogenitalis is found predominantly in the urogenital tracts of humans, but it can also be isolated from other body sites, including the oral cavity, gastrointestinal tract, and respiratory system. The gram-positive nature of A. urogenitalis indicates a thick peptidoglycan layer in its cell wall, which contributes to its robustness and ability to survive in a variety of conditions. The rod shape allows for efficient mobility and colonization of host tissues. As a facultative anaerobe, A. urogenitalis can adapt to both aerobic and anaerobic environments, showcasing its flexibility in utilizing oxygen or fermentation pathways based on environmental availability. The classification as a chemoheterotroph signifies that A. urogenitalis relies on organic substrates for growth, making it an integral part of the human microbiome as it helps in the breakdown of complex organic materials in the urogenital tract and other body sites. This metabolic versatility enables it to play a role in maintaining homeostasis within the microbial community. Furthermore, A. urogenitalis has been implicated in various human health conditions, particularly in cases of infections associated with the urogenital tract. Its presence in clinical specimens underscores the need for accurate identification in diagnostic microbiology, as it can be a marker for certain pathological states. Understanding this microbe's role in health and disease further emphasizes its importance in the study of human microbiota." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces urogenitalis Positive Facultative anaerobe 525246 ACFH00000000.1 Bac0003402 Anaerococcus lactolyticus ATCC 51172 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus lactolyticus 525254 ABYO00000000.1 Bac0003403 Anaerococcus tetradius ATCC 35098 "Anaerococcus tetradius ATCC 35098 is a Gram-positive coccus characterized by its spherical shape. This bacterium belongs to the genus Anaerococcus, which is recognized for its anaerobic metabolism, suggesting that A. tetradius thrives in low-oxygen environments. While information regarding its specific ecological niche and interactions within microbial communities remains limited, its classification as an anaerobic organism indicates potential roles in various biological processes, such as fermentation or the breakdown of organic matter.↵↵The coccoid morphology of A. tetradius is consistent with other members of its genus, which often display similar cellular characteristics. In addition to its Gram-positive staining, this trait may influence its susceptibility to certain antibiotics and its ecological dynamics, particularly in anaerobic habitats where it may coexist with other microorganisms.↵↵Overall, the available traits of Anaerococcus tetradius ATCC 35098 highlight its adaptation to anaerobic conditions, suggesting that it may contribute to the complex interplay of microbial life in environments such as the human gut or other anaerobic ecosystems. Further research could elucidate its specific metabolic pathways and potential benefits to the microbiome, as well as its interactions with other microbial species." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus tetradius Positive Cocci 525255 ACGC00000000.1 Bac0003404 Corynebacterium pseudogenitalium ATCC 33035 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudogenitalium 525264 ABYQ00000000.2 Bac0003405 Corynebacterium striatum ATCC 6940 "Corynebacterium striatum ATCC 6940 is a Gram-positive, rod-shaped bacterium that thrives in warm environments, making it a mesophilic organism. It is classified as a chemoheterotroph, utilizing organic compounds for energy and carbon, exhibiting a facultative anaerobic metabolism, which allows it to grow in both the presence and absence of oxygen. This microbe can be found in assorted body sites across various species, including the skin, respiratory tract, and mucosal surfaces. As a Gram-positive bacterium, C. striatum possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram staining procedure, giving it a violet appearance under a microscope. Its rod shape, typical of many Corynebacteria, contributes to its distinctive arrangement in clusters or palisades that resemble Chinese letters. The mesophilic nature of C. striatum permits optimal growth at moderate temperatures, usually around 30 to 37 degrees Celsius, which is conducive to its survival in human-associated environments. Corynebacterium striatum is often found as part of the normal flora of human skin, but it can also be implicated in opportunistic infections, particularly in immunocompromised individuals. The facultative anaerobic characteristic indicates its versatility, allowing it to thrive in environments with fluctuating oxygen levels.Additionally, this microbe has drawn attention due to its potential role in nosocomial infections and its increasing resistance to common antibiotics, highlighting the significance of monitoring its prevalence and susceptibility patterns in clinical settings. In recent years, C. striatum has been recognized not just as a commensal organism but as a pathogen warranting further investigation into its virulence factors and mechanisms of antibiotic resistance." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium striatum Positive Facultative anaerobe 525268 ACGE00000000.1 Bac0003406 Erysipelothrix rhusiopathiae ATCC 19414 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelothrix Erysipelothrix rhusiopathiae microaerophile 525280 ACLK00000000.2 Bac0003407 Finegoldia magna ATCC 53516 "Finegoldia magna ATCC 53516 is a Gram-positive, cocci-shaped anaerobic bacterium that is known to inhabit multiple environments. This organism is part of the normal human microbiota, often residing in various body sites, including the gastrointestinal tract. Its anaerobic nature indicates that Finegoldia magna thrives in oxygen-limited conditions, which is characteristic of many commensal bacteria. ↵↵The presence of Finegoldia magna in diverse habitats suggests its potential role in maintaining microbial balance within these ecosystems. While the specific interactions and functions of F. magna in its habitats warrant further investigation, its ability to flourish in anaerobic environments highlights its adaptability and possibly significant contributions to the overall microbiome dynamics. Understanding the ecological roles and metabolic capabilities of F. magna may provide insights into its function within both human health and disease contexts, emphasizing the complex interactions between anaerobic microorganisms and their environments." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 525282 NZ_CM000955.1 Bac0003408 Lentilactobacillus buchneri ATCC 11577 "Lentilactobacillus buchneri ATCC 11577 is a Gram-positive, facultative anaerobic bacterium characterized by its rod shape and tendency to form chains. This microbe is known to inhabit multiple environments, indicating a versatile ecological niche that allows it to thrive under varying conditions. The facultative anaerobic nature of L. buchneri suggests its capability to adapt to both aerobic and anaerobic environments, which can be advantageous for survival in diverse habitats, such as fermented foods or plant materials, where oxygen levels fluctuate.↵↵In laboratory settings, L. buchneri exhibits significant metabolic activity, contributing to the fermentation processes typical of lactic acid bacteria. Its ability to grow in the presence or absence of oxygen may enhance its utility in food fermentation, where it can produce lactic acid and other metabolites that influence flavor, preservation, and texture. Moreover, the chain-forming characteristic may facilitate the establishment of biofilms, which can play a role in its ecological interactions within its habitat.↵↵The presence of L. buchneri in various environments underscores its potential importance in microbial ecosystems, particularly in fermentation and spoilage processes. Its adaptability may also reflect an evolutionary strategy that allows it to compete effectively with other microorganisms in complex microbial communities. Ultimately, understanding the traits and behaviors of L. buchneri can provide insights into its applications in food technology and its role in natural fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri Positive Rod Facultative anaerobe Mesophilic Multiple Free living Chains 525318 ACGH00000000.1 Bac0003409 Lactobacillus iners DSM 13335 "Lactobacillus iners DSM 13335 is a Gram-positive, rod-shaped bacterium, categorized as a facultative anaerobe, which thrives optimally in a temperature range of 30–37°C. This microbe is a member of the Lactobacillus genus, known for its role in fermentative processes and is primarily classified as a heterotroph due to its requirement for organic compounds as a carbon source. Lactobacillus iners is predominantly found in various body sites, especially in the female genital microbiota, where it plays a crucial role in maintaining vaginal health. It is also present in the gastrointestinal tract and oral cavity, contributing to the microbial diversity and function within these ecosystems. The bacterium's ability to thrive in diverse environments and its adaptability are pivotal for its survival and ecological roles. As a facultative anaerobe, Lactobacillus iners can survive in both aerobic and anaerobic conditions, showcasing its versatility. In oxygen-rich environments, it can perform respiration, while in low-oxygen conditions, it switches to fermentation, allowing it to colonize various niches in the body effectively.Lactobacillus iners is particularly interesting due to its dynamic role in the vaginal microbiome. It is often associated with a state of health, helping to prevent infections by producing lactic acid, lowering the pH, and inhibiting the growth of pathogenic organisms. Its presence is linked to a reduced risk of conditions such as bacterial vaginosis, highlighting its importance in maintaining microbial balance and overall health in the female reproductive system. Its probiotic potential is also a topic of ongoing research, emphasizing its significance in therapeutic applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus iners Positive Rod Facultative anaerobe 525328 ACLN00000000.1 Bac0003410 Lactobacillus johnsonii ATCC 33200 "Lactobacillus johnsonii ATCC 33200 is a Gram-positive, rod-shaped bacterium that typically forms chains and demonstrates facultative anaerobic metabolism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate thermal environments. As a host-associated microbe, L. johnsonii ATCC 33200 is commonly found in various biological niches within its host, potentially contributing to the maintenance of a balanced microbiome.↵↵The facultative anaerobic nature of L. johnsonii ATCC 33200 allows it to adapt to varying oxygen conditions, which is advantageous for survival in diverse habitats, including the gastrointestinal tract where it may play a role in fermentation processes. The ability to grow in the presence or absence of oxygen suggests that this bacterium can efficiently utilize available substrates, facilitating its role in microbial communities.↵↵Lactobacillus species, including L. johnsonii, are often recognized for their potential beneficial effects on host health, particularly in the context of digestion and nutrient absorption. Their presence in host-associated habitats highlights the intricate relationships between microbes and their hosts, where these bacteria may contribute to metabolic processes, enhance immune responses, or even influence host behavior. Understanding the traits of L. johnsonii ATCC 33200 can provide valuable insights into its functional contributions within the microbiome, elucidating its role in sustaining host health and ecological balance." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains 525330 ACGR00000000.1 Bac0003411 Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 = DSM 5622 = JCM 8130 "Lacticaseibacillus paracasei subsp. paracasei ATCC 25302, also known as DSM 5622 or JCM 8130, is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is categorized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which enhances its adaptability across diverse habitats. Lacticaseibacillus paracasei subsp. paracasei exhibits optimal growth at a temperature of 30.0°C, suggesting a preference for moderately warm environments, which may be reflective of its natural niches, including fermented foods and various ecological settings. ↵↵As a member of the lactic acid bacteria group, this organism is likely involved in the fermentation process, contributing to the production of lactic acid. This metabolic capability not only plays a crucial role in food preservation and flavor development but also underscores its potential significance in human health, particularly in gut microbiota modulation and probiotic applications. Its ability to form chains may enhance its stability and functionality in various fermentation processes, suggesting that Lacticaseibacillus paracasei subsp. paracasei could be integral to both traditional fermentation practices and modern biotechnological applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 525337 ACGY00000000.1 Bac0003412 Lacticaseibacillus rhamnosus LMS2-1 "Lacticaseibacillus rhamnosus LMS2-1 is a Gram-positive, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This microbe is part of a diverse group of lactic acid bacteria and is known to inhabit multiple ecological niches, indicating its versatility and adaptability in various habitats. ↵↵As a facultative anaerobe, Lacticaseibacillus rhamnosus LMS2-1 can switch between fermentation and respiration depending on the availability of oxygen, which may enhance its survival in fluctuating environmental conditions. This metabolic flexibility is advantageous for colonization in diverse habitats, potentially including the gastrointestinal tract of mammals, where it may play a role in maintaining gut health.↵↵The ability of Lacticaseibacillus rhamnosus LMS2-1 to thrive in multiple habitats suggests that it may contribute to microbial community dynamics, influencing the overall microbial balance and functionality in these ecosystems. Its presence could be significant in the context of probiotic applications, where it may interact with other microbial populations to support host health and resilience against dysbiosis." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 525361 ACIZ00000000.1 Bac0003413 Ligilactobacillus ruminis ATCC 25644 "Ligilactobacillus ruminis ATCC 25644 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This versatile microbe can thrive in both aerobic and anaerobic environments, making it well-adapted for various ecological niches, particularly in the gastrointestinal tracts of mammals. As a member of the Lactobacillus genus, Ligilactobacillus ruminis is likely involved in the fermentation processes that contribute to the maintenance of gut health. ↵↵Facultative anaerobes like Ligilactobacillus ruminis can switch between aerobic respiration and fermentation, allowing them to efficiently utilize available substrates in different oxygen conditions. This characteristic not only enhances their survival in diverse habitats but also plays a crucial role in the microbial ecosystem within the host. The presence of such microorganisms is essential for the fermentation of dietary fibers, which can lead to the production of short-chain fatty acids beneficial for intestinal health.↵↵Understanding the specific traits of Ligilactobacillus ruminis ATCC 25644 can offer insights into its potential applications in probiotic formulations and its role in promoting a balanced gut microbiota. Its adaptability to variable oxygen levels suggests that it may contribute to the resilience of the gut microbiome in fluctuating environmental conditions, ultimately supporting the host’s overall health and well-being." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ruminis Positive Rod Facultative anaerobe 525362 ACGS00000000.2 Bac0003414 Lactobacillus ultunensis DSM 16047 "Lactobacillus ultunensis DSM 16047 is a Gram-positive, rod-shaped bacterium that thrives in mesophilic temperature ranges, is classified as a heterotroph, and is known to be an obligate anaerobe. This microbe is part of the diverse Lactobacillus genus, which is primarily found in various body sites such as the human gastrointestinal tract, oral cavity, and urogenital tract, as well as in fermented foods. As a Gram-positive organism, Lactobacillus ultunensis possesses a thick peptidoglycan layer in its cell wall, which gives it a strong structural integrity and contributes to its capability to withstand harsher environmental conditions compared to its Gram-negative counterparts. The rod shape of the bacterium is typical for many Lactobacilli, facilitating its mobility and interaction with other microorganisms in its niche. Being a mesophilic organism, Lactobacillus ultunensis prefers moderate temperatures, typically around 30-37 degrees Celsius, which aligns with the temperatures found in the human body. Its heterotrophic nature indicates that it obtains its carbon and energy from organic compounds, which it metabolizes anaerobically, making it well adapted to environments devoid of oxygen. Lactobacillus ultunensis plays a crucial role in human health through its involvement in the fermentation process. It contributes to the production of lactic acid, which aids in maintaining a balanced microbiota, thereby inhibiting the growth of pathogenic bacteria. This strain is also utilized in the food industry for the fermentation of dairy products, providing beneficial properties such as enhanced flavor, preservation, and probiotic benefits. Its metabolic activities and interactions with host organisms underline its significance in both health and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus ultunensis Positive Rod non-motile Facultative anaerobe 32 mesophilic non-spore-forming 525365 ACGU00000000.1 Bac0003415 Prescottella equi ATCC 33707 "Prescottella equi ATCC 33707 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolism and requires aerobic conditions for growth. This microbe is capable of utilizing a variety of organic compounds as energy sources, which suggests a flexible metabolic capacity that may enable it to thrive in diverse habitats. The coccal morphology of P. equi, along with its aerobic nature, indicates a potential adaptation to environments with sufficient oxygen levels, which may include soil, water, or animal-associated niches. ↵↵The ecological versatility of Prescottella equi may play a role in its interactions within microbial communities, although specific relationships and ecological roles remain to be elucidated. Its ability to grow in various habitats could also suggest an importance in nutrient cycling or in the degradation of organic materials within those ecosystems. Understanding the precise ecological functions of Prescottella equi could provide insights into its contributions to microbial diversity and ecosystem health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Prescottella Prescottella equi Positive Cocci No 1 Aerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 525370 NZ_CM001149.1 Bac0003416 Sphingobacterium spiritivorum ATCC 33300 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum 525372 ACHB00000000.1 Bac0003417 Sphingobacterium spiritivorum ATCC 33861 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum 525373 ACHA00000000.2 Bac0003418 Streptococcus pneumoniae TCH8431/19A "A Gram-positive nonmotile bacterium, Streptococcus pneumoniae is the most common bacterial cause of acute respiratory infection and otitis media, and is estimated to result in over 1 millions deaths in children, the elderly, debilitated and immunosuppressed people every year. Since 1990 the number of penicillin-resistant strains has increased and many strains are now resistant to commonly prescribed antibiotics such as penicillin, macrolides and fluoroquinones. Strain AP200 is a clinical strain isolated in Italy in 2003 from the cerebrospinal fluid of a patient with meningitis. It is serotype 11A and sequence type (ST) 2003, which is a single-locus variant of ST62. It is resistant to erythromycin, inducibly resistant to clindamycin and susceptible to penicillin and tetracycline (adapted from PMID 18070957). (EBI Integr8)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae TCH8431/19A Positive Cocci No 1 1 Facultative 30 Mesophilic HostAssociated Free living Homo sapiens Chains-Pairs Nonsporulating Yes 525381 NC_014251.1 Bac0003419 Desulfomicrobium baculatum DSM 4028 "Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) is a strictly anaerobic, mesophilic, sulfate reducer Gram-negative bacterium, originally isolated from water-saturated manganese carbonate ore. Its metabolism is respiratory or fermentative. It reduces sulfate to sulphide, and in the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO2. Furthermore, sulfate, sulfite and thiosulfate are used as electron acceptors and are reduced to H2S. It is not able to reduce nitrate. Malate, fumarate and pyruvate can be fermented with succinate and acetate as end products, but the carbohydrates are not fermented. D. baculatum does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated, and has an optimal growth temperature between 28-37 degrees Celsius. Vitamins are not required for growth . This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae (Adapted from PMID 21304634). (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium baculatum DSM 4028 Negative Rod Yes 1 2 Anaerobic Mesophilic Terrestrial Free living Nonsporulating No 525897 NC_013173.1 Bac0003420 Thermobaculum terrenum ATCC BAA-798 "Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) is an obligate aerobic, non-spore-forming, hyperthermophilic Gram-positive bacterium isolated from an extreme thermal soil (pH of 3.9 and temperatures ranging from 65 to 92 degrees Celsius) in Yellowstone National Park, Wyoming, USA. It forms pink-colored colonies. This organism is able to grow heterotrophically on various carbon compounds and at temperatures of up to 92 degrees Celsius. Growth occurs in a pH range of 6-8, the optimum being pH 7. It uses only oxygen as an electron acceptor, and its growth is not affected by light. T. terrenum contains a novel fatty acid profile, has cell wall muramic acid content similar to that of Bacillus, and fails to display a lipopolysaccharide profile in SDS-polyacrylamide gels (indicative of a Gram-negative cell wall structure). Ultrastructure examinations with transmission electron microscopy shows a thick cell wall (approximately 34 nm wide) external to a cytoplasmic membrane. Phylogenetic analysis of the 16S rRNA gene sequence placed this organism in a clade composed entirely of environmental clones most closely related to the phyla Chloroflexi and Thermomicrobia. Perhaps the most intriguing characteristic of T.terrenum that sets it apart from Chloroflexi and its relatives is the cell wall structure, which appears to resemble that of a typical Gram-positive bacterium. The Chloroflexi all share the common trait of lacking an outer membrane; however, all members also have a very thin cell wall and stain Gram-negative. Therefore, T. terrenum likely represents an extreme example within a continuum of cell wall structures observed in the Chloroflexi-Thermomicrobia cluster. (EBI Integr8)" Bacillati Chloroflexota Chloroflexia Candidatus Thermobaculales Candidatus Thermobaculaceae Thermobaculum Thermobaculum terrenum ATCC BAA-798 Positive Rod No 1 1 Aerobic 67 Heterotroph Hyperthermophilic Specialized Free living Pairs - Singles Nonsporulating No 525904 NC_013525.1 Bac0003421 Acidimicrobium ferrooxidans DSM 10331 "Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) is a moderately thermophilic, ferrous-iron-oxidizing acidophile Gram-positive bacterium isolated from hot spring runoff in Iceland. This organism is able to oxidize ferrous iron to ferric iron. The optimal growth temperature for A.ferrooxidans is 48 degrees Celsius (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29525). (EBI Integr8)" Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Acidimicrobiaceae Acidimicrobium Acidimicrobium ferrooxidans DSM 10331 Positive Rod No 1 1 Anaerobic 45 Autotroph Thermophilic Specialized Free living Nonsporulating No 525909 NC_013124.1 Bac0003422 Anaerococcus prevotii DSM 20548 "Anaerococcus prevotii DSM 20548 is classified as a mesophile, a chemoheterotroph that generates energy through fermentation, exhibits a Gram-positive stain, has a coccoid shape, resides in the human gut and oral cavity, and is an obligate anaerobe.As a mesophile, Anaerococcus prevotii thrives optimally at moderate temperatures, typically between 30-37°C, making it well-suited for growth in the human body. This microbe's classification as a chemoheterotroph indicates that it relies on organic compounds for both its carbon and energy needs, utilizing fermentation pathways to generate ATP without the need for oxygen. The Gram-positive nature of A. prevotii is indicative of its thick peptidoglycan cell wall, which retains crystal violet dye during the Gram staining process, a characteristic that often relates to its pathogenic potential and resistance to environmental stresses. The coccoid shape of A. prevotii allows it to exist in various arrangements, typically appearing in clusters or pairs, which can affect its interactions with other microbes in the gut microbiome. As an obligate anaerobe, this bacterium cannot survive in the presence of oxygen, preferring the anoxic conditions found in the gastrointestinal tract, where it plays a crucial role in digestion and nutrient absorption. Anaerococcus prevotii is notable for its association with the human microbiome, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut health. Moreover, alterations in its abundance have been linked to various health conditions, highlighting its importance in maintaining a balanced microbiota. Understanding the role of A. prevotii in health and disease may provide insights into potential therapeutic approaches for gastrointestinal disorders." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus prevotii DSM 20548 Positive Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Homo sapiens Pairs Nonsporulating Yes 525919 NC_013164.1 Bac0003423 Gordonia bronchialis DSM 43247 "Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) is a pathogenic, aerobic Gram-positive bacterium isolated from the sputum of woman with cavitary disease of both upper lungs. This organism is known to cause infections in immunocompromised and immunocompentent hosts. It causes bacteremia and endocarditis. (Adaptated from PMID: 15184495). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia bronchialis DSM 43247 Positive Rod No 1 1 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Filaments Nonsporulating Yes 526226 NC_013441.1 Bac0003424 Allomeiothermus silvanus DSM 9946 "Allomeiothermus silvanus DSM 9946 is a Gram-negative, aerobic rod-shaped bacterium that thrives in specialized habitats at an optimal growth temperature of 50.0°C. This microbe is nonsporulating, indicating that it does not form spores as a means of survival under unfavorable conditions. The specific ecological niche that A. silvanus occupies is not elaborated upon in the available data; however, its adaptation to high temperatures suggests a potential role in thermophilic environments, such as hot springs or geothermal soil, where it may contribute to biogeochemical cycling or the degradation of organic materials at elevated temperatures. Understanding the metabolic pathways and ecological interactions of A. silvanus could provide insights into microbial adaptations to extreme environments and the evolutionary processes that shape microbial communities in such specialized habitats." Thermotogati Deinococcota Deinococci Thermales Thermaceae Allomeiothermus Allomeiothermus silvanus Negative Rod No 1 2 Aerobic 50 Thermophilic Specialized Free living Nonsporulating 526227 NC_014212.1 Bac0003425 Tetragenococcus osmophilus str. JCM 31126 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus osmophilus 526944 NZ_CP027784.1 Bac0003426 Bacillus cereus R309803 "Bacillus cereus R309803 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25°C, suggesting a preference for moderate environmental conditions. As an aerobic microbe, B. cereus R309803 requires oxygen for growth, which indicates its potential role in various aerobic processes within its habitat. ↵↵Bacillus cereus species are known to inhabit diverse environments, which may include soil, water, and plant surfaces, allowing them to participate in nutrient cycling and other ecological interactions. The ability of B. cereus R309803 to grow in chains may enhance its survival and resilience in fluctuating environments, facilitating effective nutrient acquisition and colonization strategies. ↵↵Understanding the traits of B. cereus R309803 contributes to our knowledge of microbial diversity and the functional roles these bacteria may play in their ecosystems, particularly in relation to their aerobic lifestyle and adaptability to various habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526968 ACLY00000000.1 Bac0003427 Bacillus cereus BGSC 6E1 "Bacillus cereus BGSC 6E1 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain demonstrates optimal growth at a temperature of 25.0°C, indicating its adaptability to moderate environmental conditions. ↵↵Bacillus cereus is known for its ability to inhabit a diverse range of habitats, which may include soil, food sources, and plant surfaces, reflecting its ecological versatility. The organism's aerobic requirement suggests it thrives in oxygen-rich environments, which may influence its distribution and ecological roles in various ecosystems. ↵↵The chaining arrangement of cells may contribute to its survival strategies, potentially aiding in nutrient acquisition and resilience in fluctuating environmental conditions. Further research into the specific ecological interactions and metabolic capabilities of Bacillus cereus BGSC 6E1 could provide insights into its functional roles in microbiomes and its potential applications in biotechnology and environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526970 ACLU00000000.1 Bac0003428 Bacillus cereus m1293 "Bacillus cereus m1293 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen during metabolic processes. ↵↵B. cereus m1293 is known to inhabit multiple environments, suggesting a versatile ecological adaptability that may allow it to colonize various substrates. The capacity for chain formation may enhance its survival in fluctuating conditions by providing structural stability. ↵↵Given its aerobic nature and optimal growth temperature, this microbe may play a role in decomposing organic material in temperate ecosystems, contributing to nutrient cycling. The adaptability and resilience of B. cereus m1293 in diverse habitats underline the ecological significance of this bacterium, particularly in environments where oxygen availability varies. Understanding its traits can provide insights into its role in microbial communities and its potential applications in bioremediation or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526973 ACLS00000000.1 Bac0003429 Bacillus cereus BDRD-ST196 "Bacillus cereus BDRD-ST196 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain exhibits optimal growth at a temperature of 25.0°C, indicating a preference for moderate environmental temperatures. The versatility of B. cereus BDRD-ST196 is further highlighted by its ability to inhabit multiple ecological niches, suggesting a robust adaptability to various habitats. ↵↵As a member of the Bacillus genus, this strain is likely to possess characteristics commonly associated with soil and environmental resilience. The formation of chains may facilitate interactions within microbial communities, potentially influencing nutrient cycling and biogeochemical processes in its habitat. Overall, B. cereus BDRD-ST196 presents an interesting model for studying the ecological roles of aerobic, chain-forming rod bacteria in diverse environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526976 ACMD00000000.1 Bac0003430 Bacillus cereus Rock1-15 "Bacillus cereus Rock1-15 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic metabolism. This strain thrives optimally at a temperature of 25.0°C, suggesting its adaptation to moderately warm environments. B. cereus is known to inhabit a variety of ecological niches, indicating its versatility and potential for survival in diverse habitats.↵↵As a member of the Bacillus genus, B. cereus Rock1-15 likely possesses the ability to form endospores, a trait commonly associated with members of this group, although specific information on this capability is not provided in the current data. Its aerobic nature indicates that it requires molecular oxygen for growth, which can influence its distribution in environments where oxygen availability varies.↵↵The ecological versatility of B. cereus Rock1-15 may allow it to play a role in nutrient cycling within its habitats, potentially contributing to the degradation of organic matter. This ability to thrive in multiple habitats emphasizes the importance of understanding the ecological roles of such microbes, as they may influence soil health, plant growth, and overall ecosystem dynamics. Further studies could elucidate the specific environmental conditions that favor its proliferation and the contributions it makes to its ecological niches." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526982 NZ_CM000729.1 Bac0003431 Bacillus cereus Rock3-44 "Bacillus cereus Rock3-44 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and thrives in aerobic conditions. This strain exhibits an optimal growth temperature of 25.0°C, indicating a preference for moderate temperatures that may align with its diverse habitats. ↵↵As a member of the Bacillus genus, B. cereus Rock3-44 is likely to exhibit traits common to this group, such as the ability to form spores, which allows for resilience in various environmental conditions. The bacterium's ability to inhabit multiple environments suggests a level of ecological versatility, potentially enabling it to adapt to various niches and substrates.↵↵Understanding the physiological traits of B. cereus Rock3-44 can provide insights into its role within microbial communities, particularly in environments where aerobic processes are prevalent. Its adaptation to chain formation may enhance its survival and competitive abilities in these ecosystems, allowing for efficient nutrient acquisition and interaction with other microorganisms. Further exploration of this strain's ecological interactions could reveal important functions within its habitat, such as nutrient cycling or the influence on the microbial dynamics of its community." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526986 NZ_CM000733.1 Bac0003432 Bacillus cereus Rock4-2 "Bacillus cereus Rock4-2 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This microbe exhibits optimal growth at a temperature of 25.0°C, indicating a preference for moderate environmental temperatures. The ability of B. cereus Rock4-2 to inhabit diverse habitats suggests a versatile ecological adaptability, which may contribute to its survival in various environments, potentially including soil and plant-associated niches.↵↵As a member of the Bacillus genus, B. cereus species are known for their resilience and ability to form endospores, although strain-specific details regarding sporulation were not provided. The aerobic nature of B. cereus Rock4-2 implies that it relies on oxygen for its metabolic activities, which may influence its distribution in environments where oxygen availability fluctuates.↵↵The ecological versatility of B. cereus Rock4-2, along with its chain-forming arrangement, may facilitate its interaction with other microorganisms and its ability to colonize surfaces in its habitat. This characteristic could play a role in its ecological dynamics, possibly influencing nutrient cycling and the microbial community structure in the environments it occupies. Such traits underscore the importance of B. cereus Rock4-2 as a potentially significant player in its ecosystem, contributing to the complex interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526987 ACMM00000000.1 Bac0003433 Bacillus cereus Rock4-18 "Bacillus cereus Rock4-18 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This microbe thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its reliance on oxygen for metabolic processes. The ability to survive in multiple habitats suggests a versatile ecological niche that may include environments rich in organic matter, where it can perform various ecological roles, such as decomposition or nutrient cycling. ↵↵The chain arrangement of Bacillus cereus Rock4-18, along with its aerobic metabolism, may facilitate cooperative interactions within microbial communities, potentially enhancing its survival and adaptability in fluctuating environmental conditions. This trait may also contribute to its ability to form biofilms, which can play a significant role in the microbe's ecological interactions. Understanding these characteristics provides insight into the adaptive strategies of Bacillus cereus Rock4-18 and its potential contributions to ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526988 ACMN00000000.1 Bac0003434 Bacillus cereus AH1271 "Bacillus cereus AH1271 is a Gram-positive rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. Bacillus cereus species are known for their diverse habitats, and AH1271 is no exception, as it can be found in multiple ecological niches, suggesting its adaptability to varying environmental conditions.↵↵The rod shape and chain arrangement of Bacillus cereus AH1271 are characteristic of the Bacillus genus, which is recognized for its ability to form endospores and survive in harsh conditions. While specific pathogenicity traits of AH1271 are not provided, the broader Bacillus cereus group is known for its role in food spoilage and occasional foodborne illnesses. ↵↵The aerobic nature of this strain implies a reliance on oxygen for growth, which could influence its ecological interactions, particularly in environments where oxygen availability fluctuates. This adaptability may allow Bacillus cereus AH1271 to occupy niches that are inhospitable to other microorganisms, thereby playing a potential role in nutrient cycling and microbial community dynamics within its habitats. Overall, the traits of Bacillus cereus AH1271 reflect its ecological versatility and potential contributions to both biogeochemical processes and interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526992 ACMR00000000.1 Bac0003435 Bacillus cereus AH1272 "Bacillus cereus AH1272 is a Gram-positive, rod-shaped bacterium that typically exhibits a chain-like arrangement of cells. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. The diverse habitats associated with B. cereus AH1272 suggest its adaptability to various environments, potentially including soil, water, and decaying organic matter.↵↵The filamentous growth pattern of Bacillus cereus AH1272 may play a role in its ecological interactions, as the chain arrangement can enhance nutrient acquisition and facilitate biofilm formation in suitable environments. Such traits may contribute to its survival and competitive advantages in diverse ecological niches, underscoring the organism's potential ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526993 ACMS00000000.1 Bac0003436 Bacillus pseudomycoides DSM 12442 "Bacillus pseudomycoides DSM 12442 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives optimally at a temperature of 40.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, positioning it within a metabolic niche that allows it to utilize a variety of substrates in its environment. Its natural habitat is soil, where it contributes to the microbial community by participating in nutrient cycling and potentially influencing soil health through its metabolic activities.↵↵The ability of Bacillus pseudomycoides to sporulate is particularly noteworthy, as it enables the organism to withstand adverse environmental conditions, such as changes in moisture and temperature. This trait not only enhances its survival but also suggests a role in the resilience of soil microbial communities. The optimal growth temperature of 40.0°C indicates a preference for warmer environments, which may correlate with its presence in thermophilic soil niches. ↵↵Thus, Bacillus pseudomycoides DSM 12442 exemplifies the adaptations of soil bacteria to specific thermal and nutritional conditions, highlighting its potential significance in maintaining ecological balance within its habitat." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 527000 NZ_CM000745.1 Bac0003437 Bacillus thuringiensis serovar tochigiensis BGSC 4Y1 "Bacillus thuringiensis serovar tochigiensis BGSC 4Y1 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain is typically found in host-associated habitats, suggesting a specific ecological niche where it interacts with host organisms. ↵↵As a member of the Bacillus genus, B. thuringiensis serovar tochigiensis BGSC 4Y1 is known for its distinct life cycle, which includes the formation of endospores that enable it to survive in diverse environmental conditions. The facultative anaerobic nature of this strain indicates that it can thrive in both aerobic and anaerobic environments, allowing it to colonize a range of host-associated environments effectively.↵↵The ecological implications of B. thuringiensis serovar tochigiensis BGSC 4Y1's habitat and metabolic versatility suggest that it may play a role in the microbial dynamics of its host environment, potentially influencing nutrient cycling and microbial community structure. Further research into its interactions within these host-associated habitats may provide insights into its ecological significance and functional capabilities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 527024 ACMY00000000.1 Bac0003438 Bacillus thuringiensis serovar pakistani str. T13001 "Bacillus thuringiensis serovar pakistani str. T13001 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and adapt to host-associated environments. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. As a member of the Bacillus genus, B. thuringiensis is particularly noted for its production of insecticidal crystal proteins, which are effective against certain pests, although specific pathogenicity details for this strain are not provided.↵↵The habitat of B. thuringiensis serovar pakistani str. T13001 suggests an association with particular host organisms, which may contribute to its ecological role in controlling pest populations within those environments. The sporulation capability of this strain enables it to survive adverse conditions, potentially facilitating its persistence in host-associated niches. The facultative anaerobic nature of this bacterium indicates that it can adapt to various environmental conditions, which may include both aerobic and anaerobic environments encountered in host-associated habitats.↵↵This strain's ability to occupy host-associated niches while maintaining metabolic flexibility may play a significant role in its ecological interactions, possibly influencing microbial dynamics in the presence of other microorganisms. Further exploration of its ecological relationships could yield insights into its potential applications in biocontrol strategies and sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 527027 ACNC00000000.1 Bac0003439 Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 "Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated habitats. As a facultative anaerobe, this microbe has the metabolic flexibility to utilize both aerobic and anaerobic environments, allowing it to adapt to varying conditions within its host ecosystem. ↵↵The sporulation capability of B. thuringiensis serovar pondicheriensis BGSC 4BA1 is particularly significant as it enables the bacterium to survive in harsh conditions, forming endospores that can withstand desiccation and extreme temperatures. This trait not only contributes to its resilience but also plays a crucial role in its life cycle, facilitating long-term persistence in the environment.↵↵While specific pathogenicity or ecological interactions are not detailed in the provided traits, the association with hosts suggests potential roles in symbiotic or parasitic interactions within various biological systems. Understanding the ecological implications of this bacterium could yield insights into its interactions with host organisms, potentially influencing microbial community dynamics and nutrient cycling in its habitat. Further research may explore its applications in agriculture or biocontrol, underscoring the importance of B. thuringiensis serovar pondicheriensis BGSC 4BA1 in both ecological and practical contexts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 527029 NZ_CM000755.1 Bac0003440 Azospirillum thiophilum str. DSM 21654 "Azospirillum thiophilum str. DSM 21654 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 37.0°C. This microbe is primarily associated with plant roots, suggesting a role in the rhizosphere, where it may interact with plant systems.↵↵As a member of the Azospirillum genus, A. thiophilum is known for its potential involvement in promoting plant growth through nitrogen fixation and enhancing nutrient uptake. Its association with plant roots indicates a symbiotic relationship that could benefit both the bacterium and the host plant, potentially contributing to improved plant health and productivity.↵↵The habitat preference for plant roots suggests that A. thiophilum may play a significant role in soil ecosystems, particularly in the context of agricultural practices aimed at sustainable crop production. By colonizing the rhizosphere, this bacterium may influence soil microbial diversity and nutrient cycling, thereby affecting overall soil health and fertility. Understanding the specific interactions between A. thiophilum and plant roots could provide insights into the development of biofertilizers and sustainable agricultural practices, highlighting the importance of this microbe in promoting plant growth and ecosystem stability." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum thiophilum Gram-negative rod aerobic 37 mesophilic plant roots 528244 LAEL00000000.1 Bac0003441 Bacillus thuringiensis YBT-1518 "Bacillus thuringiensis YBT-1518 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a facultative anaerobe. This strain is known to be host-associated, indicating a potential relationship with specific hosts that may support its growth and survival in natural environments. ↵↵The sporulation characteristic of B. thuringiensis YBT-1518 allows it to form resilient spores, which can enhance its survival under unfavorable conditions. As a facultative anaerobe, this bacterium can thrive in both aerobic and anaerobic environments, providing it with a versatile metabolic adaptability that may facilitate colonization in diverse ecological niches associated with its hosts.↵↵Understanding the specific interactions of Bacillus thuringiensis YBT-1518 within its host-associated habitat could provide insights into its ecological role and potential applications in biological control, particularly given the common use of B. thuringiensis strains in agriculture. Its ability to adapt to varying oxygen levels may also influence its effectiveness and persistence in targeted environments, highlighting the importance of ecological context in the utilization of this microbe." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 529122 NC_022876.1 Bac0003442 Belliella pelovolcani "Belliella pelovolcani is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is characterized by its inability to form spores, which may influence its survival strategies in various environments. As a strictly aerobic organism, B. pelovolcani relies on oxygen for its metabolic processes, indicating a potential role in aerobic degradation of organic compounds in its ecological niche.↵↵The rod shape of B. pelovolcani may contribute to its motility and nutrient acquisition in environments where oxygen levels are sufficient. Its growth at 37.0°C suggests an adaptation to warm habitats, possibly associated with environments that experience geothermal activity or human-related niches where such temperatures are prevalent.↵↵Further investigation into the metabolic pathways of B. pelovolcani could elucidate its role in biogeochemical cycles, particularly in the degradation of organic matter in aerobic settings. Understanding the ecological role of this bacterium may provide insights into its potential applications in bioremediation or waste treatment processes, where aerobic microorganisms are instrumental in breaking down pollutants. Thus, Belliella pelovolcani exemplifies a unique adaptation to aerobic environments, highlighting the importance of temperature and oxygen availability in microbial ecology." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Belliella Belliella pelovolcani Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 529505 FTOP00000000.1 Bac0003443 Rhodoluna lacicola str. MWH-Ta8 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola 529884 NZ_CP007490.1 Bac0003444 Prauserella marina str. DSM 45268 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella marina 530584 QGTN00000000.1 Bac0003445 Prauserella marina Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella marina 530584 FMZE00000000.1 Bac0003446 Sphaerospermopsis reniformis Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Sphaerospermopsis Sphaerospermopsis reniformis 531300 BJCE00000000.1 Bac0003447 Gracilibacillus ureilyticus "Gracilibacillus ureilyticus is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This microbial species exhibits the distinctive morphological and physiological features typical of the genus Gracilibacillus, which includes a robust cell wall structure and resilience in various environmental conditions due to its sporulation capability. ↵↵As a spore-forming organism, G. ureilyticus can survive in harsh environments, enabling it to endure extreme conditions and potentially facilitating its persistence in diverse habitats. The Gram-positive nature of this bacterium suggests a thick peptidoglycan layer, which is a defining feature of many bacteria within this group. Such characteristics may play a role in its interactions with other microorganisms and its adaptation to specific ecological niches.↵↵While the ecological role of G. ureilyticus remains to be fully elucidated, its ability to metabolize ureides could indicate a potential involvement in nitrogen cycling processes in soil or aquatic environments. This metabolic capability may contribute to nutrient availability and influence microbial community dynamics. Future studies could provide further insights into its ecological significance and potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gracilibacillus Gracilibacillus ureilyticus Gram-positive rod motile spore-forming 531814 FOGL00000000.1 Bac0003448 Cylindrospermopsis raciborskii CS-505 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Cylindrospermopsis Cylindrospermopsis raciborskii 533240 ACYA00000000.1 Bac0003449 Raphidiopsis brookii D9 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Raphidiopsis Raphidiopsis brookii 533247 ACYB00000000.1 Bac0003450 Burkholderia pseudomallei MSHR346 "Burkholderia pseudomallei MSHR346 is a Gram-negative, rod-shaped bacterium classified within the genus Burkholderia. This strain is known to inhabit terrestrial environments, suggesting a potential association with soil or sediment ecosystems. As an aerobic organism, Burkholderia pseudomallei MSHR346 requires oxygen for growth, which aligns with its environmental habitat where oxygen availability is typically sufficient.↵↵The morphological characteristics of this bacterium, being rod-shaped and Gram-negative, indicate a specific structural composition of its cell wall that can influence its interaction with other microorganisms and its resilience in various environmental conditions. Its terrestrial habitat may also imply that Burkholderia pseudomallei MSHR346 could play a role in soil microbiomes, possibly participating in nutrient cycling or influencing the microbial community structure.↵↵While specific pathogenicity traits of this strain are not provided, the broader genus is known for its clinical relevance, particularly in tropical regions. Understanding the ecological role of Burkholderia pseudomallei MSHR346 in terrestrial environments could provide insights into its interactions within microbial communities and its potential impact on soil health and ecosystem dynamics, emphasizing the importance of studying environmental strains of this bacterium." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 536230 NC_012695.1 Bac0003451 Chryseobacterium taklimakanense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium taklimakanense 536441 NZ_LT906465.1 Bac0003452 Chitinophaga niastensis str. DSM 24859 "Chitinophaga niastensis str. DSM 24859 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0 °C. This species is part of the Chitinophaga genus, which is known for its ability to degrade chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. ↵↵The Gram-negative nature of C. niastensis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various ecological niches. The rod shape is characteristic of many environmental bacteria, allowing for efficient nutrient uptake and movement in liquid environments. ↵↵Chitinophaga niastensis str. DSM 24859 may play a significant role in the decomposition of organic matter, particularly in environments where chitin is abundant. By breaking down chitin, this microbe potentially facilitates nutrient cycling and supports the microbial community dynamics in soil and aquatic ecosystems. Further study of its metabolic capabilities could reveal insights into its ecological functions, particularly in relation to chitin degradation and its interactions with other microorganisms." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga niastensis Gram-negative rod non-motile aerobic 29 mesophilic 536980 PYAW00000000.1 Bac0003453 Bacteroides cellulosilyticus DSM 14838 "Bacteroides cellulosilyticus DSM 14838 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic environments, classified as a heterotroph and an obligate anaerobe. This microbe is part of the Bacteroides genus, which plays a crucial role in the human gut microbiome, as well as in various other environments like the intestines of animals and in diverse soil habitats. Being Gram-negative, Bacteroides cellulosilyticus possesses a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides, contributing to its resilience in harsh environments. The rod shape, or bacillus, facilitates motility and helps in the efficient colonization of substrates, particularly in nutrient-rich environments such as the gastrointestinal tract. Its mesophilic temperature preference, typically ranging from 20°C to 45°C, indicates its capability to thrive in moderate temperatures, making it well-suited for the human body and animal hosts. As a heterotroph, Bacteroides cellulosilyticus relies on organic compounds for growth and energy, often utilizing complex polysaccharides like cellulose. This ability to break down cellulose is particularly significant, as it aids in the digestion of fibrous plant materials in the intestines of herbivorous animals, thereby enhancing nutrient availability. Being an obligate anaerobe, it flourishes in environments devoid of oxygen, which is characteristic of the gut, where oxygen levels are extremely low. Notably, Bacteroides cellulosilyticus has garnered interest in biotechnological applications, particularly in the field of waste treatment and biofuel production due to its cellulose-degrading capabilities. Researchers are exploring its potential in converting agricultural waste into bioethanol, thus contributing to sustainable energy solutions and highlighting the importance of such microbes in ecological balance and environmental health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus Negative Anaerobe 537012 ACCH00000000.1 Bac0003454 Candidatus Liberibacter asiaticus str. psy62 "Candidatus Liberibacter asiaticus str. psy62. Candidatus Liberibacter asiaticus causes Huanglongbing (also called citrus greening disease) in citrus in Asia. This organism causes a lethal infection to the tree and is transmitted from tree to tree by the sap-sucking Asian citrus psyllid, Diaphorina citri. Once infected the citrus tree turns yellow (huanglongbing means yellow dragon disease) and the fruit remains green. The genome of Candidatus Liberibacter asiaticus str. psy62 will provide information on the virulence factors involved in infection and transmission of this important plant pathogen. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Liberibacter Candidatus Liberibacter asiaticus psy62 Negative Mesophilic HostAssociated Diaphorina citri Yes 537021 NC_012985.3 Bac0003455 Actinobacillus pleuropneumoniae serovar 7 str. AP76 "Actinobacillus pleuropneumoniae serovar 7 str. AP76 is a Gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures (20-45°C) and is classified as a chemoheterotroph, obtaining its energy from organic compounds. This microbe is an important pathogen predominantly found in pigs, where it colonizes the respiratory tract, particularly affecting the lungs. Its ability to cause pleuropneumonia is a significant concern in swine production, leading to considerable economic losses. As a member of the Pasteurellaceae family, A. pleuropneumoniae displays virulence factors such as polysaccharide capsules and various exotoxins that promote its survival and pathogenicity within the host. Its Gram-negative cell wall structure, composed of a thin peptidoglycan layer surrounded by an outer membrane, contributes to its resistance against certain antibiotics, making infections challenging to treat.The microbe is also categorized as a facultative anaerobe, meaning it can survive in both aerobic and anaerobic conditions. This adaptability allows A. pleuropneumoniae to thrive in the oxygen-variable environments of the pig's respiratory system. Beyond its role as a pathogen, A. pleuropneumoniae possesses critical implications for veterinary medicine and swine husbandry practices. Vaccination strategies targeting specific serotypes, including serovar 7, have been developed to mitigate outbreaks. Research into its genomics and pathogenesis continues to advance our understanding of microbial interactions with the host and the mechanisms underlying its virulence. This bacterium serves as an important model for studying respiratory diseases in livestock, highlighting the complexities of host-microbe relationships in agricultural settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae AP76 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Sus Scrofa Chains - Pairs - Singles No 537457 NC_010941.1 Bac0003456 Bifidobacterium longum subsp. infantis CCUG 52486 "Bifidobacterium longum subsp. infantis CCUG 52486 is a Gram-positive, rod-shaped bacterium that thrives in a mesophilic temperature range, is classified as a heterotroph, and is an obligate anaerobe. This microbe is primarily found in the intestines of infants, where it plays a critical role in early gut colonization. It is prevalent in various body sites, including the gastrointestinal tract, oral cavity, and vaginal microbiota, highlighting its versatile presence in infants and young children. With its rod shape, Bifidobacterium longum subsp. infantis demonstrates a characteristic morphology that is particularly suited for its ecological niche in the gut. As a Gram-positive bacterium, it possesses a thick peptidoglycan layer, which contributes to its resistance against certain environmental stresses. The mesophilic temperature preference indicates that it thrives best at moderate temperatures, aligning with the warm environment of the human gastrointestinal tract. As a heterotroph, this microbe relies on organic compounds for growth and metabolism, consuming carbohydrates present in breast milk, especially human milk oligosaccharides (HMOs). This ability to utilize HMOs is crucial during infancy and aids in establishing a healthy gut microbiome. Being an obligate anaerobe means it cannot survive in the presence of oxygen, which is consistent with its habitat in the anaerobic conditions found within the intestines. Bifidobacterium longum subsp. infantis CCUG 52486 has gained significant attention for its potential health benefits, including immune system modulation, protection against gastrointestinal infections, and promotion of overall gut health. Its probiotic properties make it an essential component of many infant formulas and supplements, aiding in the development of a balanced and diverse gut microbiota during a critical period of growth and development." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 537937 ABQQ00000000.1 Bac0003457 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 "Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 is a gram-negative, spiral-shaped bacterium that thrives optimally at 37°C, classifying it as a mesophile. This microbe is a heterotroph, relying on organic compounds for its carbon and energy sources. Additionally, it is categorized as a microaerophile, requiring lower levels of oxygen than what is present in the atmosphere for optimal growth and metabolism. Helicobacter cinaedi is primarily isolated from human gastrointestinal tracts, although it has been found colonizing various other body sites, including blood and stool samples. This bacterium is notable for its role in human health, being associated with gastrointestinal disorders such as gastritis and peptic ulcers. Its unique spiral shape aids motility, allowing it to navigate the viscous mucus layer of the stomach lining, where it adheres and proliferates. The pathogenic potential of Helicobacter cinaedi is particularly noteworthy, given its ability to evade the immune response and establish chronic infections. Genetic adaptations, including the presence of virulence factors, contribute to its survival in harsh gastric conditions. In some cases, this microbe has been linked to extra-gastrointestinal diseases, including bacteremia and infections in immunocompromised patients, highlighting its capacity to disseminate beyond the gastrointestinal tract. Its close relationship with other members of the Helicobacter genus, particularly Helicobacter pylori, raises questions about its evolutionary adaptations and ecological niche among human microbiota. Continued research into Helicobacter cinaedi may unlock new insights into its role in disease etiology and potential therapeutic avenues for managing infections it causes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi Negative Microaerophile 537971 NC_020555.1 Bac0003458 Rhizobium etli 8C-3 "Rhizobium etli 8C-3 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells and is classified as an aerobic organism. This microbe is primarily associated with host organisms, indicating a symbiotic relationship, particularly with certain leguminous plants. The association of R. etli 8C-3 with host plants suggests its potential role in nitrogen fixation, which is a crucial process that enhances soil fertility and promotes plant growth. ↵↵As an aerobic bacterium, R. etli 8C-3 requires oxygen for its metabolic processes, which aligns with its habitat preferences and symbiotic lifestyle. The specific adaptation to aerobic conditions may facilitate efficient nutrient exchange between the bacterium and its plant host, thereby contributing to the overall health and productivity of the ecosystem in which it resides.↵↵Understanding the traits and behaviors of Rhizobium etli 8C-3 provides valuable insights into its role in promoting sustainable agricultural practices, particularly in nitrogen management strategies, which can lead to reduced reliance on chemical fertilizers. This highlights the importance of studying such microorganisms, as they play a significant role in maintaining ecological balance and enhancing agricultural productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Singles 538025 NZ_CP017241.1 Bac0003459 Rhizobium rosettiformans W3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium rosettiformans 538378 STGU00000000.1 Bac0003460 Stappia indica "Stappia indica is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 32.0°C. This microbe is characterized by its distinct morphological and physiological traits, which align with the broader characteristics typically attributed to the genus Stappia. As a Gram-negative organism, Stappia indica possesses a thin peptidoglycan layer surrounded by an outer membrane, which contributes to its structural integrity and influences its interactions with the environment.↵↵Given its optimal growth temperature, Stappia indica may be well-suited to mesophilic environments, potentially indicating a niche within temperate ecosystems where the ambient temperature fluctuates around this range. While specific ecological roles and interactions are not detailed, the thermal preference suggests that Stappia indica could play a role in nutrient cycling or organic matter degradation in habitats that experience moderate temperatures.↵↵Furthermore, the rod shape of Stappia indica may confer advantages in motility and surface adherence, which are essential traits for colonization and interaction with various substrates. This morphology may also facilitate the microbe's ability to thrive in diverse environments, potentially contributing to a dynamic ecological role within its habitat. Understanding the physiological and environmental preferences of Stappia indica can provide insights into its potential functional contributions to microbial communities and ecosystem processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Stappia Stappia indica Gram-negative rod 32 mesophilic 538381 OBML00000000.1 Bac0003461 Francisella philomiragia subsp. philomiragia ATCC 25015 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia 539329 NZ_CP010019.1 Bac0003462 Rhodovulum steppense str. DSM 21153 "Rhodovulum steppense str. DSM 21153 is a rod-shaped bacterium that belongs to the group of purple non-sulfur phototrophic bacteria. This microorganism is characterized by its unique metabolic capabilities, which include the ability to perform anoxygenic photosynthesis. Rhodovulum steppense str. DSM 21153 thrives in environments rich in organic matter, where it can utilize light as an energy source while fixing carbon dioxide. ↵↵The rod shape of this bacterium may play a role in its motility and nutrient acquisition, allowing it to efficiently navigate through various substrates in its habitat. The organism's ability to grow in diverse conditions showcases its metabolic versatility, which is a common trait among purple non-sulfur bacteria. While specific details regarding its habitat or ecological interactions are not provided, members of the Rhodovulum genus are typically found in aquatic environments, suggesting a potential role in global carbon cycling and nutrient dynamics.↵↵Overall, the unique combination of rod morphology and photosynthetic capability positions Rhodovulum steppense str. DSM 21153 as an interesting subject for further investigation into microbial processes in anaerobic environments, particularly concerning its contribution to organic matter decomposition and energy flow in microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum steppense rod 540251 SLVM00000000.1 Bac0003463 Roseovarius indicus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius indicus 540747 FOMY00000000.1 Bac0003464 Actinomyces oris "Actinomyces oris is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites, including the oral cavity, gut, and urogenital tract, in all possible species of humans. As an obligate anaerobe, A. oris requires the absence of oxygen to grow and survive.The gram-positive characteristic of A. oris indicates the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram-staining procedure, appearing purple under a microscope. The rod shape of A. oris allows it to inhabit and interact with its environment in a specific way, often forming colonies and biofilms.As a chemoheterotroph, A. oris relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its metabolic processes. This is evident in its ability to degrade a variety of substrates, including carbohydrates and proteins.The mesophilic temperature preference of A. oris allows it to thrive in temperatures ranging from 20-45°C, which is typical of the human body's temperature. This adaptability enables A. oris to colonize various body sites, including those with limited oxygen availability.A. oris plays a significant role in the human oral microbiome, contributing to the formation of dental plaque and influencing the overall health of the oral cavity. The presence of A. oris has been linked to periodontal diseases, highlighting the importance of understanding its interactions with the host and other microorganisms." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces oris Positive Facultative anaerobe submucosal sulcus; vaginal mucosa 544580 MSQE00000000.1 Bac0003465 Aliarcobacter thereius Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter thereius 544718 VBUF00000000.1 Bac0003466 Priestia megaterium QM B1551 "Priestia megaterium QM B1551 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in aerobic environments, particularly in soil habitats. This microbe is notable for its ability to form endospores, a trait that allows it to withstand adverse environmental conditions and contributes to its resilience in the soil ecosystem. The sporulation process is a crucial adaptation for survival, enabling P. megaterium to persist during periods of nutrient scarcity or unfavorable conditions.↵↵As an aerobe, P. megaterium relies on oxygen for its metabolic processes, which may influence its distribution and ecological interactions within soil environments. The presence of this bacterium in soil suggests its potential role in nutrient cycling and organic matter decomposition, which are essential functions in maintaining soil health and fertility. Moreover, the resilient nature of P. megaterium, combined with its sporulation capability, indicates its importance in biogeochemical processes, potentially contributing to the stability of microbial communities within diverse soil ecosystems. Understanding the specific roles of P. megaterium in soil ecology could provide insights into its applications in biotechnology and environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Soil Free living Sporulating 545693 NC_014025.1 Bac0003467 Leadbettera azotonutricia ZAS-9 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Leadbettera Leadbettera azotonutricia 545695 NC_015577.1 Bac0003468 Treponema paraluiscuniculi Cuniculi A Treponema paraluiscuniculi Cuniculi A. Treponema paraluiscuniculi Cuniculi A will be used for comparative analysis with other species of Treponema. (NCBI BioProject: bp_list[1]) Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema paraluiscuniculi Cuniculi A Negative Spirilla No Anaerobic Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 545776 NC_015714.1 Bac0003469 Dietzia lutea str. YIM 80766 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia lutea 546160 NZ_CP015449.1 Bac0003470 Neisseria cinerea ATCC 14685 "Neisseria cinerea ATCC 14685 is a gram-negative, diplococcal bacterium that thrives best at human body temperature (approximately 37°C). As a heterotroph, it derives its nutrients from organic carbon sources found in its environment. This versatile microbe is classified as a facultative anaerobe, meaning it can grow in both aerobic and anaerobic conditions. This organism is part of the Neisseria genus, which includes several important human pathogens, but Neisseria cinerea is generally considered a commensal organism. It commonly colonizes mucosal surfaces, particularly in the nasopharynx and oropharynx, and has been found in the urogenital tract as well. While primarily associated with healthy individuals, it can occasionally be isolated from clinical specimens, although its role in disease remains unclear. The gram-negative nature of N. cinerea is indicative of its cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature contributes to its resistance against certain antibiotics and makes it a subject of study concerning the mechanisms of microbial resistance. Furthermore, its diplococcal shape enhances its survival and adaptability, allowing it to form pairs and clusters, which can facilitate communication and nutrient exchange in diverse environments. Research has revealed that N. cinerea can share genetic material with pathogenic Neisseria species through horizontal gene transfer, raising questions about its potential to acquire virulence factors. The ability of N. cinerea to coexist with more virulent bacteria in the same ecological niche underscores the complex dynamics of microbial communities in humans and the importance of understanding the role of commensals in health and disease." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria cinerea Negative Aerobe 546262 ACDY00000000.2 Bac0003471 Neisseria mucosa ATCC 25996 "Neisseria mucosa ATCC 25996 is a Gram-negative, cocci-shaped bacterium, categorized as a mesophile, meaning it thrives at moderate temperatures typically between 20°C to 45°C. This microbe is a chemoheterotroph, deriving energy and carbon from organic compounds, and is often found as part of the normal flora in various body sites, including the mucosal surfaces of the respiratory and urogenital tracts, as well as the oral cavity. N. mucosa functions as a facultative anaerobe, capable of surviving in both aerobic and anaerobic environments, which allows it to adapt well within the diverse physiological conditions of the human body. As a member of the Neisseria genus, N. mucosa is closely related to the pathogenic Neisseria species, such as Neisseria gonorrhoeae and Neisseria meningitidis, yet it is generally considered non-pathogenic in nature. This bacterium is often found in the human microbiome and plays a role in maintaining the balance of microbial communities. Its presence can potentially inhibit the growth of more harmful bacteria, showcasing its role in microbial antagonism. N. mucosa has been studied for its potential applications in biotechnology, particularly in the field of molecular biology and genetic engineering. The unique biological characteristics of this microbe, along with its resilience in various environments, make it a model organism for research on microbial growth and interactions. Moreover, its ability to form biofilms can offer insights into chronic infections and microbial resistance mechanisms, further underscoring its significance in both environmental and clinical contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria mucosa Negative Facultative anaerobe 546266 ACDX00000000.2 Bac0003472 Selenomonas sputigena ATCC 35185 Selenomonas sputigena ATCC 35185.This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sputigena DSM 20758 Rod Yes Anaerobic Mesophilic HostAssociated Free living Homo sapiens 546271 ACKP00000000.2 Bac0003473 Fusobacterium periodonticum ATCC 33693 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum 546275 ACJY00000000.1 Bac0003474 Enterococcus faecium E1679 "Enterococcus faecium E1679 is a Gram-positive coccus that exhibits facultative anaerobic growth. This bacterium is characterized by its spherical shape, which is typical of the Enterococcus genus, and it can thrive in both aerobic and anaerobic environments. As a member of the lactic acid bacteria group, E. faecium is notable for its ability to ferment sugars, producing lactic acid as a primary metabolic end product. ↵↵This strain's facultative anaerobic nature allows it to adapt to varying oxygen levels, contributing to its resilience in diverse ecological niches. Enterococcus faecium is commonly found in the gastrointestinal tracts of humans and animals, which may provide insights into its potential role in gut microbiota dynamics. Its adaptability to different oxygen conditions suggests a possible involvement in microbial communities where fluctuating oxygen levels occur, such as in the gastrointestinal tract or in soil environments.↵↵The metabolic versatility of E. faecium E1679 may also enhance its ecological interactions, supporting its survival in varied environments and possibly influencing nutrient cycling. Understanding the physiological traits of this strain can provide valuable perspectives on its ecological role and potential applications in biotechnology or medicine, particularly in contexts that exploit its metabolic capabilities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 546340 ABSC00000000.1 Bac0003475 Amycolatopsis australiensis Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis australiensis 29 mesophilic 546364 FPJG00000000.1 Bac0003476 Hafnia paralvei str. CITHA-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia paralvei 546367 NQMS00000000.1 Bac0003477 Hafnia paralvei Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia paralvei 546367 SITD00000000.1 Bac0003478 Deinococcus deserti VCD115 "Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) is an aerobic, radiation-resistant bacterium isolated from upper gamma-irradiated sand layers of the Sahara. D. deserti is resistant to gamma radiation, UV radiation, and desiccation due to a very efficient DNA repair mechanism. Heavy UV- and desiccation-induced damage to membranes, proteins and nucleic acids is lethal to most organisms. Vegetative bacteria that survive these stresses must therefore either protect vital components from damage and/or repair them efficiently, especially upon rehydration. The tolerance of D. deserti to high doses of ionizing radiation is a consequence of its response to natural DNA damaging conditions such as desiccation. Repair of massive DNA damage in D. deserti involves widespread DNA repair proteins, such as RecA and PolA. Besides its resistance to high doses of gamma and UV radiation, D. deserti also tolerated prolonged desiccation, with about 50% survival after 40 days of desiccation. The tolerance of D. deserti to desiccation is related to efficient DNA repair rather than DNA protection mechanisms. (adapated from PMID: 19201974). (EBI Integr8)" Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus deserti VCD115 Negative Rod No 1 1 Aerobe 29 Mesophilic Terrestrial Free living Nonsporulating No 546414 NC_012526.1 Bac0003479 Microlunatus sagamiharensis "Microlunatus sagamiharensis is a spherical, aerobic bacterium that thrives at an optimal temperature of 25.0 °C. This microbe exhibits a distinct morphology characterized by its rounded shape, which is typical of many members of the Actinobacteria phylum. The aerobic nature of M. sagamiharensis indicates its reliance on oxygen for metabolic processes, positioning it within environments where oxygen is readily available.↵↵The optimal growth temperature suggests that M. sagamiharensis may be well-suited to moderate climates or habitats that provide stable thermal conditions, potentially including soil or decaying organic material. Such environments often harbor diverse microbial communities, allowing M. sagamiharensis to interact with other microorganisms, possibly influencing nutrient cycling and organic matter decomposition.↵↵The morphology and growth requirements of Microlunatus sagamiharensis indicate its potential role in ecosystems as a contributor to aerobic biodegradation processes. Understanding its physiological preferences can help elucidate its ecological functions, particularly in environments where organic matter is present and aerobic conditions prevail. Further research could reveal the specific metabolic pathways utilized by M. sagamiharensis, enhancing our comprehension of its ecological interactions and applications in bioremediation or biotechnological processes." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus sagamiharensis sphere aerobic 25 mesophilic 546874 NZ_LT629799.1 Bac0003480 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 "Bifidobacterium pseudocatenulatum DSM 20438 is a gram-positive, rod-shaped bacterium, classified as a mesophile, that thrives in moderate temperatures. This microbe is a chemoheterotroph, deriving its energy from organic compounds while requiring organic carbon sources for growth. It is categorized as an obligate anaerobe, meaning it cannot survive in the presence of oxygen. Bifidobacterium pseudocatenulatum is part of the Bifidobacterium genus, which is commonly found in the gastrointestinal tracts of humans and other mammals, particularly in infants fed with breast milk. It plays a crucial role in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids that are beneficial for gut health and overall metabolism. This bacterium can also be detected in other body sites, including the oral cavity and potentially the urogenital tract, reflecting its significance in maintaining microbiota balance in various ecosystems within the host. The morphology of Bifidobacterium pseudocatenulatum, appearing as small, branched rods, distinguishes it from other genera of bacteria. In terms of growth conditions, this species flourishes in the anaerobic environments of the gut, where it performs vital functions such as probiotic activities, enhancing gut barrier function, and modulating immune responses.Moreover, Bifidobacterium pseudocatenulatum has garnered attention for its potential in probiotic applications, particularly in supporting digestive health, combating pathogenic bacteria, and enhancing lactose digestion in lactose-intolerant individuals. Its ability to thrive in diverse environments and contribute positively to host health makes it an essential subject of study in microbiology and nutrition." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum Positive Anaerobe 547043 ABXX00000000.2 Bac0003481 Neisseria sicca ATCC 29256 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sicca 547045 ACKO00000000.2 Bac0003482 Mycolicibacterium vulneris Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium vulneris environment 547163 NCXM00000000.1 Bac0003483 Arthrobacter pityocampae str. Tp2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter pityocampae 547334 PRKW00000000.1 Bac0003484 Methanohalophilus mahii DSM 5219 "Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) is a coccoid, halophilic, methanogen archaeon isolated from sediment from the Great Salt Lake. Surface colonies are cream to pale yellow and circular and often appear foamy due to trapped gases. M. mahii is found in anaerobic sediments with salinity levels at or above seawater concentration. It requires sodium chloride concentrations in the moderately halophilic range of 1.0 to 2.5 M for optimal growth and methanogenesis. Trimethylamine, dimethylamine, methylamine, and methanol serve as substrates for growth. The optimum temperature, pH and salinity for growth and methanogenesis are 37 degrees Celsius, pH 7.5 and 2.0 M NaCl, respectively. (Adapted from : http://ijs.sgmjournals.org/cgi/reprint/38/1/122.pdf). (HAMAP: METMS)" Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus mahii DSM 5219 Cocci No 1 1 Anaerobe Methylotroph Mesophilic Specialized Free living No 547558 NC_014002.1 Bac0003485 Natrialba magadii ATCC 43099 "Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) is an aerobic, haloalkaliphilic (thriving in high salt concentrations and high pH) extremophile archaeon isolated from Lake Magadi in Kenya. It thrives in alkaline hypersaline conditions (pH 9.5, 3.5 M NaCl) and encodes enzymes that are not only salt tolerant but also often tolerant of high pH, high temperatures, and the presence of solvents. (Adapted from:http://genome.jgi-psf.org/natma/natma.home.html). (HAMAP: NATMM)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba magadii ATCC 43099 Negative Rod Yes 1 1 Aerobic Mesophilic Specialized Free living Nonsporulating No 547559 NC_013923.1 Bac0003486 Staphylococcus aureus subsp. aureus MN8 "Staphylococcus aureus subsp. aureus MN8 is a Gram-positive coccus that typically exhibits a characteristic arrangement in clusters and singles. This strain is facultatively anaerobic, allowing it to thrive in both the presence and absence of oxygen, which is advantageous for survival in varied environments. S. aureus subsp. aureus MN8 has an optimal growth temperature of 3.0°C, indicating its potential adaptability to cooler habitats, possibly including certain host-associated niches. ↵↵As a member of the Staphylococcus genus, this strain is expected to share common biochemical characteristics with other members of the species, including the production of coagulase, which is often associated with pathogenic strains. However, specific pathogenicity traits or virulence factors are not detailed here. Its habitat is primarily host-associated, suggesting that S. aureus subsp. aureus MN8 may have evolved mechanisms to coexist with or exploit host organisms, potentially impacting the host's microbiome or health.↵↵The ability to grow at low temperatures while maintaining facultative anaerobic metabolism may provide S. aureus subsp. aureus MN8 with a competitive advantage in cooler environments or during specific physiological conditions within a host, such as during hypoxia or in localized infections where oxygen availability may fluctuate. This adaptability underscores the ecological versatility of the species and its implications for both environmental and clinical microbiology." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 548470 ACJA00000000.2 Bac0003487 Corynebacterium aurimucosum ATCC 700975 "Corynebacterium aurimucosum ATCC 700975 is a Gram-positive, rod-shaped bacterium that thrives at mesophilic temperatures and is classified as a chemoheterotroph. It is predominantly found in various body sites across multiple species, including the skin, respiratory tract, and gastrointestinal tract. As a facultative anaerobe, C. aurimucosum exhibits versatile metabolic pathways that allow it to grow in both the presence and absence of oxygen, making it suitable for diverse environments. The Gram-positive nature of C. aurimucosum is characterized by a thick peptidoglycan layer in its cell wall, which is responsible for its retention of the crystal violet stain during Gram staining. This structural feature contributes to its resilience and plays a critical role in its survival in various ecological niches. Its rod shape, typical of many members of the Corynebacterium genus, allows for efficient colonization and adaptation to specific habitats. As a chemoheterotroph, C. aurimucosum obtains its energy through the consumption of organic compounds, underscoring its dependence on environmental sources for growth and metabolism. This metabolic flexibility is particularly advantageous in the diverse microbial communities found in human and animal bodies, where it can utilize a variety of substrates. The presence of C. aurimucosum in human microbiomes has implications for health, as it is often associated with both beneficial roles and potential pathogenicity. Research indicates that its interactions with other microbial species may contribute to the overall balance of the microbiota, influencing host immune responses and metabolic processes. Furthermore, like other Corynebacterium species, C. aurimucosum may produce bioactive compounds with potential applications in biotechnology and medicine, highlighting its relevance beyond mere colonization." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium aurimucosum ATCC 700975 Positive Rod No 1 1 Facultative aerobe Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating No 548476 NC_012590.1 Bac0003488 Bifidobacterium longum subsp. longum ATCC 55813 "*Bifidobacterium longum subsp. longum ATCC 55813* is a gram-positive, rod-shaped bacterium best categorized as a heterotroph. This species thrives optimally at a temperature range of 30–37°C and is classified as an obligate anaerobe, meaning it requires an oxygen-free environment to grow and reproduce. Bifidobacterium longum subsp. longum is commonly found in the gastrointestinal tracts of various mammals, including humans, where it participates significantly in maintaining gut health. It colonizes various body sites, particularly the colon, but can also be present in the oral cavity and the vaginal microbiota. As a member of the Bifidobacteriaceae family, *B. longum* plays a critical role in the microbiome by contributing to the fermentation of dietary fibers, producing beneficial short-chain fatty acids like acetate and lactate. These byproducts help regulate gut pH and serve as energy sources for colonic cells. The presence of *B. longum* is associated with numerous health benefits, including enhanced immune function, improved digestion, and protection against intestinal pathogens. Research indicates that *B. longum* may also exert anti-inflammatory effects, making it a focus of interest in studies related to conditions such as irritable bowel syndrome (IBS) and inflammatory bowel diseases (IBD). Moreover, this strain has been utilized in probiotic formulations aimed at restoring microbial balance in individuals whose gut microbiota has been disrupted by antibiotic usage or gastrointestinal infections. Its robust nature and ability to adapt to various environments reinforce its potential as a therapeutic agent in promoting gut health and overall wellness." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 548480 ACHI00000000.1 Bac0003489 Natribacillus halophilus "Natribacillus halophilus is a Gram-positive, rod-shaped bacterium known for its ability to form spores and thrive in aerobic conditions. This microbe exhibits an optimal growth temperature of approximately 29.0°C, indicating a preference for moderate ambient temperatures commonly found in saline environments. ↵↵As a spore-forming organism, Natribacillus halophilus possesses the capability to withstand adverse environmental conditions, which may include fluctuations in salinity and temperature. This trait is particularly advantageous for survival in extreme habitats, such as hypersaline environments where other microorganisms might struggle. The Gram-positive nature of Natribacillus halophilus suggests a robust cell wall structure, typically associated with a thicker peptidoglycan layer, which may contribute to its resilience in challenging conditions.↵↵Given its specific traits, Natribacillus halophilus may play a significant role in biogeochemical cycles within saline ecosystems. Its aerobic metabolism indicates a reliance on oxygen for energy production, which may influence the microbial community dynamics and nutrient cycling in its native habitat. The ability to sporulate further enhances its ecological fitness, allowing it to persist in environments that experience periodic desiccation or other stressors. Thus, Natribacillus halophilus serves as an intriguing example of microbial adaptation to extreme saline conditions, potentially contributing to the stability and functioning of these unique ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Natribacillus Natribacillus halophilus Gram-positive rod aerobic 29 mesophilic spore-forming 549003 FNEN00000000.1 Bac0003490 Edaphobacillus lindanitolerans Bacillati Bacillota Bacilli Caryophanales Bacillaceae Edaphobacillus Edaphobacillus lindanitolerans 550447 FTPL00000000.1 Bac0003491 Geobacillus sp. Y412MC52 "Geobacillus sp. (strain Y412MC52) is a facultatively aerobic, chemoorganotrophic Gram-positive bacterium isolated from the Obsidian Hot Spring in Yellowstone National Park. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/48641). (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. Y412MC52 Y412MC52 Positive Bacilli Yes 1 1 Facultative Chemoorganotroph Thermophilic Specialized Free living Sporulating No 550542 NC_014916.1 Bac0003492 Nostoc azollae 0708 "The order Nostocales grow as unbranched filaments and produce up to three kinds of differentiated cells. Heterocysts differentiate in response to the lack of nitrogen in the environment and are the sites of nitrogen fixation (3-10% of total cells). Nostoc species also produce relatively short, motile filaments called hormogonia and spore-like structures termed akinetes in response to nutrient limitation other than nitrogen. Nostoc species are widely distributed in illuminated portions of the biosphere, including fresh waters and tropical, temperate and polar terrestrial systems; they are rarely found in marine habitats. Growth is often as a colony of filaments within a gelatinous matrix. Many Nostoc species occur in symbiotic associations with fungi to form lichens and with representatives of each of the major phylogenetic groups of plants. They are major contributors to the sequestration of CO2 in organic compounds, especially in nutrient poor and extreme environments.Nostoc azollae strain 0708 is a symbiont of the free-floating water fern Azolla filiculoides, and is both photosynthetic and able to fix nitrogen. Nostoc colonizes cavities in the dorsal leaves of Azolla; the plant supplies the cyanobiont with fixed carbon, and receives a perpetual source of combined new nitrogen from the nitrogen-fixing cyanobiont. The cyanobiont is vertically transmitted into new plant generations within the plant reproductive organs, the sporocarps. The Nostoc cyanobiont seems to have lost its capacity for independent growth. The cyanobiont produces combined nitrogen, and as a side-reaction, the nitrogen-fixing enzyme also produces hydrogen gas, a potentially important bio-gas. This symbiotic system has been known in south-east Asia for over 1000 years, where is has been used to sustain agricultural productivity (adapted from http://genome.jgi-psf.org/anaaz/anaaz.home.html). (HAMAP: NOSA0)" Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Trichormus Trichormus azollae 708 Filamentous Yes 1 2 Aerobic Mesophilic Multiple Symbiotic Azolla filiculoides Filaments Nonsporulating No 551115 NC_014250.1 Bac0003493 Chryseobacterium piscicola "Chryseobacterium piscicola is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This microbe is part of the broader Chryseobacterium genus, which is characterized by its diverse ecological niches, predominantly in aquatic environments. The Gram-negative nature of C. piscicola suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this bacterial group and may contribute to its adaptability in various conditions.↵↵The optimal growth temperature of 16.0°C indicates that C. piscicola is well-suited to cooler environments, potentially influencing its distribution in cold-water habitats or regions with lower thermal profiles. This preference for cooler temperatures may also suggest a role in biogeochemical processes in such ecosystems, where it might interact with other microbial populations or contribute to nutrient cycling.↵↵While the specific ecological roles of C. piscicola have not been detailed, its adaptation to cooler temperatures and aquatic habitats implies that it may play a part in the microbial community dynamics of freshwater or marine ecosystems. Further investigation into its metabolic pathways and interactions with other organisms could provide insights into its ecological significance and potential applications in biotechnology or environmental management." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium piscicola Gram-negative rod non-motile 16 psychrotolerant 551459 MUGO00000000.1 Bac0003494 Bradyrhizobium sp. STM 3809 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. STM 3809 551936 CAFJ00000000.1 Bac0003495 Duganella sacchari "Duganella sacchari is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This microbe thrives optimally at a temperature of 29.0°C, indicating its potential adaptation to mesophilic environments. As a member of the diverse microbial community, Duganella sacchari may play a significant role in various ecological niches, particularly in environments where organic matter, such as sugars, is abundant. ↵↵The aerobic nature of this bacterium implies its reliance on oxygen for respiration, which may influence its distribution and interactions within microbial ecosystems. Given its morphological and physiological traits, Duganella sacchari could be involved in the degradation of organic materials, contributing to nutrient cycling in its habitat. This trait suggests that it may participate in processes such as the breakdown of plant-derived polysaccharides, which could be particularly relevant in agricultural or soil ecosystems. ↵↵Understanding the specific ecological roles and interactions of Duganella sacchari remains an area for further research, particularly in the context of microbial community dynamics and its potential applications in bioremediation or agriculture." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sacchari Gram-negative rod aerobic 29 mesophilic non-spore-forming 551987 FRCX00000000.1 Bac0003496 Flavobacterium glycines str. NBRC 105008 "Flavobacterium glycines strain NBRC 105008 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and inability to form spores. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic conditions. As a member of the Flavobacterium genus, it is likely to be involved in the decomposition of organic material, potentially playing a role in nutrient cycling within its environment. The facultative nature of its oxygen requirement suggests that F. glycines can adapt to varying oxygen levels, which may facilitate its survival in diverse habitats, including anaerobic environments or those with fluctuating oxygen concentrations. Further investigation into the metabolic pathways of this strain could shed light on its ecological functions and interactions within microbial communities, particularly in environments rich in organic substrates." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium glycines Gram-negative rod motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 551990 LVEO00000000.1 Bac0003497 Methylobacillus rhizosphaerae Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylobacillus Methylobacillus rhizosphaerae 551994 FZOA00000000.1 Bac0003498 Mucilaginibacter metallidurans Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter metallidurans 551996 NZ_CP043449.1 Bac0003499 Shewanella fodinae str. 74A "Shewanella fodinae str. 74A is a Gram-negative, rod-shaped bacterium that belongs to the genus Shewanella, which is known for its diverse metabolic capabilities. This organism is characterized by its rod morphology, a trait that is consistent with other members of the Shewanella genus. As a Gram-negative bacterium, S. fodinae str. 74A possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this classification and contributes to its distinctive cellular properties.↵↵Shewanella species are frequently studied for their role in biogeochemical processes, particularly in aquatic environments where they participate in the reduction of metal ions and organic compounds. While the specific ecological niche of S. fodinae str. 74A has not been detailed in the provided traits, its phylogenetic placement within the Shewanella group suggests potential involvement in anaerobic respiration and electron transport processes, which are critical for nutrient cycling in sediments.↵↵Understanding the metabolic pathways and ecological roles of S. fodinae str. 74A could provide insights into its function within microbial communities, particularly in environments rich in organic matter where redox reactions play a significant role in energy flow. The study of this strain may enhance our knowledge of the ecological dynamics of microbial communities and their impact on biogeochemical cycles in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella fodinae Gram-negative rod 552357 SLWF00000000.1 Bac0003500 Bifidobacterium animalis subsp. lactis BB-12 "Bifidobacterium animalis subsp. lactis BB-12 is a gram-positive, rod-shaped bacterium that thrives in mesophilic conditions, classified as a facultative anaerobe and a heterotroph, capable of metabolizing a variety of carbohydrates. This probiotic microorganism is predominantly found in the human gastrointestinal tract, particularly in the colon, as well as in the intestines of various animals, including livestock and pets. Its ability to adapt to environments rich in nutrients makes it a prominent member of the gut microbiota. The gram-positive nature of BB-12 indicates a thick peptidoglycan layer in its cell wall, a characteristic that contributes to its stability and resilience in acidic environments, such as the stomach. Its rod shape is typical of many bifidobacteria, allowing for efficient colonization and interaction with the gut lining. BB-12's preferring mesophilic conditions indicates it thrives optimally between 30-37°C, which aligns well with the human body temperature, facilitating its presence as a beneficial gut inhabitant. As a facultative anaerobe, BB-12 can grow in both the presence or absence of oxygen, which enables it to thrive in various niches within the gut. Its heterotrophic metabolism means it relies on organic compounds for energy, primarily fermenting carbohydrates to produce beneficial short-chain fatty acids, aiding in gut health and regulation of intestinal microbiota. Bifidobacterium animalis subsp. lactis BB-12 is particularly revered in the food and health industries for its probiotic properties, enhancing gut health, improving lactose digestion, and modulating the immune response. Research has shown that this strain can potentially reduce the risk of gastrointestinal disorders and contribute to overall well-being when included in functional foods and dietary supplements. Its ability to survive in processed dairy products further underscores its significance in functional nutrition and public health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis Positive Rod No 1 1 Anaerobe 39 Mesophilic Multiple Free living Nonsporulating 552531 NC_017214.2 Bac0003501 Prevotella melaninogenica ATCC 25845 "Prevotella melaninogenica ATCC 25845 is a mesophilic, Gram-negative, rod-shaped bacterium that belongs to the family Prevotellaceae. As a chemoheterotroph, it derives its energy from the breakdown of organic compounds, utilizing a variety of carbon sources as its energy source. This bacterium is capable of producing energy through the process of fermentation, where it converts glucose and other sugars into lactate, ethanol, and carbon dioxide. P. melaninogenica ATCC 25845 is classified as a facultative anaerobe, meaning it can grow in both aerobic and anaerobic environments. It exhibits a growth preference for microaerobic conditions, where oxygen levels are moderate, making it thrive in areas with limited oxygen availability. Its cell shape is characterized by a rod-like morphology, with dimensions ranging from 0.5-1.5 μm in width and 2-5 μm in length. P. melaninogenica ATCC 25845 is commonly found in the oral cavity, respiratory tract, and gastrointestinal tract of humans, as well as in soil and sediments. The bacterium's metabolic capabilities are supplemented by its ability to produce melanin, a pigment produced through the oxidation of tyrosine. This unique characteristic allows it to thrive in environments with high levels of tyrosine, such as those found in soil and decaying matter. In addition to its vital functions in the ecosystem, P. melaninogenica ATCC 25845 has earned recognition for its potential role in human health. Research has indicated that this microbe is involved in the breakdown of complex lipids and the production of bioactive compounds, which may have therapeutic applications. Furthermore, studies have suggested that alterations in the gut microbiome, including changes in the presence of P. melaninogenica ATCC 25845, may be associated with various human diseases, such as inflammatory bowel disease and colon cancer." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica ATCC 25845 Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 553174 NC_014371.1 Bac0003502 Porphyromonas endodontalis ATCC 35406 "Porphyromonas endodontalis ATCC 35406 is a Gram-negative, curved rod-shaped bacterium that thrives in a temperature range of 35-40°C, falling under the category of thermophilic microorganisms. This microbial species is a heterotroph, utilizing organic compounds as its energy source, and is capable of producing energy through anaerobic respiration. The microbe's metabolism is characterized as fermentative, meaning it relies on the breakdown of glucose and other carbohydrates to generate energy. The Gram stain reaction of Porphyromonas endodontalis ATCC 35406 is negative, indicating the presence of a thin peptidoglycan layer in its cell wall. The microbe's shape is curved or irregularly shaped, allowing it to navigate through tight spaces and adhere to surfaces. It is found in various body sites across all possible species, including the human mouth, particularly in the gingival sulcus and periodontal pockets. As an obligate anaerobe, Porphyromonas endodontalis ATCC 35406 is highly sensitive to oxygen and requires a reduced atmosphere to survive. This microbe's dependence on a low-oxygen environment is likely due to its ability to thrive in the anaerobic conditions found in the deep pockets of the human mouth. One of the most significant features of Porphyromonas endodontalis ATCC 35406 is its ability to produce a variety of virulence factors, including lipopolysaccharides, hemolysins, and proteases, which contribute to its pathogenicity. This microbe is a significant contributor to periodontal disease, particularly in individuals with compromised immune systems. Despite its significance in disease, research on Porphyromonas endodontalis ATCC 35406 has led to the development of novel therapeutic strategies for the prevention and treatment of periodontal disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas endodontalis Negative Anaerobe 553175 ACNN00000000.1 Bac0003503 Capnocytophaga gingivalis ATCC 33624 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga gingivalis No 1 Chemoheterotroph Host gut Nonsporulating 553178 ACLQ00000000.1 Bac0003504 Propionibacterium acidifaciens F0233 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium acidifaciens 553198 ACVN00000000.2 Bac0003505 Cutibacterium acnes SK137 "Cutibacterium acnes SK137 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is nonsporulating and is primarily found in host-associated habitats, suggesting a close relationship with its host organisms, including humans. ↵↵As an anaerobe, Cutibacterium acnes SK137 is adapted to environments where oxygen levels are low, which is typical of various human skin niches. Its presence in these areas highlights its potential role in skin microbiota, contributing to the complex ecosystem of microbial life that resides on the human body. ↵↵Notably, the association of Cutibacterium acnes with host tissues may provide insights into its metabolic capabilities and interactions within the microbiome. Understanding its specific adaptations to anaerobic conditions could shed light on how this bacterium influences skin health and disease, as it may engage in various metabolic processes that affect the local environment and potentially modulate host immune responses. Further studies on Cutibacterium acnes SK137 may enhance our understanding of its biological significance in maintaining skin homeostasis." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobic 37 Mesophilic HostAssociated Free living Nonsporulating 553199 NC_014039.1 Bac0003506 Rothia mucilaginosa ATCC 25296 "Rothia mucilaginosa ATCC 25296 is a Gram-positive, coccoid bacterium characterized by its microaerophilic nature, indicating that it thrives in environments with reduced oxygen levels. This species is predominantly host-associated, suggesting a close relationship with its host organisms, which may include humans and other mammals. The microbe's coccoid shape and Gram-positive classification are indicative of its structural composition, typically characterized by a thick peptidoglycan layer in the cell wall, which is a hallmark of many Gram-positive bacteria.↵↵Rothia mucilaginosa has been isolated from various clinical specimens, further emphasizing its presence in host-associated environments. Its microaerophilic requirement implies that it may inhabit niches within the host that provide lower oxygen concentrations, such as the oral cavity or respiratory tract. The ecological role of Rothia mucilaginosa may extend to contributing to the microbial community dynamics within these habitats, potentially influencing local microbial interactions and the overall health of the host.↵↵Additionally, the presence of Rothia mucilaginosa in the human microbiome highlights its potential significance in maintaining oral and respiratory health, as it may play a role in preventing the colonization of more pathogenic organisms. The understanding of its functional contributions within host-associated environments remains an important area for further research, particularly in elucidating its interactions within complex microbial communities." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa Positive Cocci Yes 1 1 Microaerophile Mesophilic HostAssociated Free living 553201 ACVO00000000.1 Bac0003507 Corynebacterium tuberculostearicum SK141 "Corynebacterium tuberculostearicum SK141 is a Gram-positive, rod-shaped bacterium that thrives in moderately warm environments, categorizing it as a mesophilic organism. This microbe operates as a chemoheterotroph, deriving energy and carbon from organic compounds, and is considered a facultative anaerobe, meaning it can grow in both aerobic and anaerobic conditions.As a member of the Corynebacterium genus, C. tuberculostearicum SK141 can often be isolated from various body sites, particularly in healthy human skin, mucosal surfaces, and various tissues. Its presence is commonly linked to skin flora and the human microbiome, indicating its role in maintaining a balanced ecosystem within the body. The bacterium's Gram-positive nature signifies the presence of a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. The mesophilic nature of C. tuberculostearicum SK141 allows it to thrive at temperatures typically found in the human body, around 37°C, making it well-adapted for survival in warm-blooded hosts. Its classification as a chemoheterotroph implies that it requires organic molecules for its energy and carbon needs, placing it in stark contrast to organisms that can utilize sunlight or inorganic substances. In addition to its role in human health, C. tuberculostearicum is also of interest in the field of biotechnology. Its ability to metabolize various fatty acids suggests potential applications in bioremediation and industrial processes where organic waste breakdown is necessary. Furthermore, studying its interactions within the microbiome may reveal insights into microbial community dynamics and human health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum Positive rod non-motile Facultative anaerobe non-spore-forming 553206 ACVP00000000.1 Bac0003508 Enhydrobacter aerosaccus SK60 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Enhydrobacter Enhydrobacter aerosaccus 553217 ACYI00000000.1 Bac0003509 Campylobacter gracilis RM3268 "Campylobacter gracilis RM3268 is a gram-negative, curved rod-shaped bacterium that thrives in a microaerophilic environment, making it a member of the thermophilic campylobacters that prefer elevated temperatures. This organism is classified as a chemoheterotroph, utilizing organic compounds for energy and as a carbon source. Its natural habitat encompasses various body sites in both avian and mammalian species, commonly found in the intestines of poultry and other vertebrates. The gram-negative characteristic of C. gracilis RM3268 denotes its unique cell wall structure, which is thin compared to gram-positive bacteria and is surrounded by an outer membrane containing lipopolysaccharides. This structure plays a significant role in its pathogenicity and resistance to certain environmental stresses. The curved shape of the bacterium contributes to its motility, which is facilitated by a single polar flagellum, allowing it to traverse viscous environments like the intestinal tract efficiently. Being a microaerophile, C. gracilis RM3268 requires reduced oxygen levels for optimal growth, typically around 5% oxygen concentration, and thrives at temperatures ranging from 37°C to 42°C. This temperature preference aligns with the body temperature of birds, its primary hosts, thereby enhancing its survival and colonization efficiency. Beyond its role as a potential pathogen, C. gracilis RM3268 is also of interest in the field of microbiology due to its unique metabolic pathways and the potential applications in food safety and antibiotic research. Its ability to thrive under specific environmental conditions makes it a subject of study for understanding microbial adaptations and their implications in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter gracilis Negative Aerobe 553220 ACYG00000000.1 Bac0003510 Vibrio breoganii Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio breoganii 553239 SYVQ00000000.1 Bac0003511 Halogranum rubrum Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogranum Halogranum rubrum 553466 FOTC00000000.1 Bac0003512 Streptomyces gilvosporeus str. F607 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces gilvosporeus 553510 NZ_CP020569.1 Bac0003513 Acidovorax carolinensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax carolinensis 553814 NZ_CP021370.1 Bac0003514 Paenibacillus rigui str. JCM 16352 "Paenibacillus rigui str. JCM 16352 is a rod-shaped, spore-forming bacterium that displays characteristics of both Gram-negative and Gram-positive organisms. This unique classification suggests a complex cell wall structure that may influence its physiological properties and environmental adaptability. Optimal growth of P. rigui str. JCM 16352 occurs at a temperature of 29.0 °C, indicating a preference for moderate warmth that may align with specific ecological niches, potentially including soil or decaying organic matter where temperatures fluctuate around this range.↵↵As an aerobic organism, P. rigui str. JCM 16352 requires oxygen for its metabolic processes, which may facilitate its role in various biogeochemical cycles, particularly in aerobic decomposition. The ability to form spores enhances its survival under unfavorable conditions, allowing it to persist in environments that may experience fluctuations in nutrient availability or moisture. ↵↵Understanding the traits of Paenibacillus rigui str. JCM 16352 can provide insight into its potential applications in biotechnology, particularly in soil health and nutrient cycling, where its aerobic metabolism and spore-forming capabilities could be harnessed for agricultural practices or bioremediation efforts. Furthermore, its specific temperature preference may offer clues about its ecological roles in temperate ecosystems, where it likely contributes to organic matter breakdown and nutrient replenishment." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus rigui Gram-negative / Gram-positive rod aerobic 29 mesophilic spore-forming 554312 NMQW00000000.1 Bac0003515 Psychrobacter piscatorii str. LQ58 "Psychrobacter piscatorii str. LQ58 is a Gram-negative, ovoid-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This microbe is classified as non-spore-forming, which suggests a reliance on favorable environmental conditions for survival and propagation rather than on sporulation as a stress response strategy. ↵↵The physiological characteristics of Psychrobacter piscatorii str. LQ58 indicate its adaptation to colder habitats, aligning with the broader ecological niche typically occupied by the Psychrobacter genus, which is often found in marine and polar environments. The organism’s preference for moderate temperatures suggests it may play a role in the microbial community dynamics of temperate aquatic ecosystems, potentially influencing nutrient cycling and organic matter decomposition. ↵↵Further research may elucidate the specific metabolic pathways employed by Psychrobacter piscatorii str. LQ58, shedding light on its ecological interactions and contributions within its habitat. Understanding this microbe’s role in cold environments could provide insights into microbial survival strategies and ecosystem functioning in the face of climate variability." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter piscatorii Gram-negative ovoid non-motile aerobic 25 mesophilic non-spore-forming 554343 LNDJ00000000.1 Bac0003516 Ectopseudomonas toyotomiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas toyotomiensis 554344 NIQV00000000.1 Bac0003517 Streptomyces sedi str. JCM 16909 "Streptomyces sedi strain JCM 16909 is a rod-shaped bacterium recognized for its ability to form spores, a characteristic that plays a crucial role in its survival and dissemination in various environments. This actinobacterial strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions, which may reflect its adaptation to specific ecological niches. ↵↵Streptomyces species are well-known for their complex life cycles and their ability to produce a diverse array of bioactive secondary metabolites, although specific metabolic capabilities of JCM 16909 remain to be elucidated. The spore-forming capacity of this strain suggests a potential for resilience against unfavorable conditions, allowing it to endure periods of desiccation or nutrient scarcity.↵↵The ecological implications of Streptomyces sedi str. JCM 16909 may be significant, particularly in soil ecosystems where it can contribute to the decomposition of organic matter and the cycling of nutrients. Its ability to form spores not only aids in survival but also facilitates its role in soil health and fertility, potentially influencing microbial community dynamics and interactions with other soil organisms. Further research may uncover the specific ecological roles and biotechnological applications of this strain, particularly in relation to its secondary metabolite production." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sedi rod 25 mesophilic spore-forming 555059 VDGT00000000.1 Bac0003518 Zymomonas mobilis subsp. mobilis ATCC 10988 "Zymomonas mobilis subsp. mobilis ATCC 10988 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs. This microbe is classified as facultatively anaerobic, indicating its ability to thrive in both the presence and absence of oxygen. Its unique metabolic capabilities contribute to its notable role in fermentation processes, particularly in the production of ethanol. ↵↵In laboratory settings, Zymomonas mobilis demonstrates a remarkable ability to ferment sugars, such as glucose and fructose, via a distinct Entner-Doudoroff pathway—an alternative to the more common glycolytic pathway found in many other microorganisms. This pathway not only enables efficient energy production but also results in the byproducts of alcohol and carbon dioxide, making Zymomonas mobilis of interest in biofuel research and production.↵↵The physiological traits of Zymomonas mobilis subsp. mobilis ATCC 10988, particularly its facultative anaerobic metabolism and its specific sugar fermentation capabilities, suggest its potential utility in sustainable biotechnological applications, such as renewable energy sources and bioprocessing. Understanding this microbe's metabolic processes could provide insights into enhancing fermentation efficiencies and optimizing conditions for industrial applications." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Zymomonadaceae Zymomonas Zymomonas mobilis Negative Rod Yes 1 2 Facultative Mesophilic Free living Pairs 555217 NC_017262.1 Bac0003519 Galbibacter marinus str. ck-I2-15 "Galbibacter marinus strain ck-I2-15 is a Gram-negative, rod-shaped bacterium that thrives optimally at 25.0°C. This organism exhibits the typical characteristics associated with Gram-negative bacteria, including a thinner peptidoglycan layer and an outer membrane that contains lipopolysaccharides. The rod shape of Galbibacter marinus is indicative of its potential role in various aquatic environments, where rod-shaped bacteria are often adapted for motility and nutrient acquisition.↵↵The optimal growth temperature of 25.0°C suggests that this strain is well-suited for marine environments, as it can efficiently metabolize and reproduce in temperate waters. The physiological and biochemical properties of Galbibacter marinus may enable it to play a significant role in the microbial communities of marine ecosystems, potentially influencing nutrient cycling, organic matter degradation, and the overall health of aquatic habitats.↵↵Given the ecological context of its optimal growth conditions, Galbibacter marinus strain ck-I2-15 may interact with other microorganisms in its environment, contributing to the complex dynamics of marine microbiomes. Its Gram-negative nature and rod morphology could also facilitate symbiotic relationships or competitive interactions with other marine bacteria, highlighting its potential importance in maintaining ecological balance in marine systems. Further research could elucidate its specific roles in nutrient cycles or interactions with other microbial inhabitants of its habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Galbibacter Galbibacter marinus Gram-negative rod non-motile 25 mesophilic 555500 AMSG00000000.1 Bac0003520 Salipiger marinus "Salipiger marinus is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 25.0°C. This organism is notable for its distinctive morphological characteristics and its adaptability to marine environments. As a Gram-negative bacterium, Salipiger marinus possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this class of microbes and contributes to its resilience in aquatic habitats.↵↵The rod shape of Salipiger marinus is indicative of its potential for motility and nutrient uptake, which can be advantageous in diverse ecological niches. The optimal growth temperature of 25.0°C suggests that this species is well-suited for life in moderately warm marine waters, where it may play a role in biogeochemical cycles.↵↵Unique to Salipiger marinus is its potential contribution to the microbial community structure within its habitat, which may impact nutrient cycling and organic matter degradation. Understanding the specific interactions of Salipiger marinus with other marine microorganisms could provide insights into the dynamics of coastal ecosystems and the roles that such bacteria play in maintaining ecological balance. Further research is needed to elucidate the functional roles of Salipiger marinus within its environment and its interactions with other marine organisms." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger marinus Gram-negative rod non-motile 25 mesophilic 555512 FNEJ00000000.1 Bac0003521 Novosphingobium sp. Rr 2-17 str. RR2-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. Rr 2-17 555793 AKFJ00000000.1 Bac0003522 Haloplanus vescus Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus vescus 555874 FNQT00000000.1 Bac0003523 Halogeometricum limi Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogeometricum Halogeometricum limi 555875 FOYS00000000.1 Bac0003524 Clostridium sp. D5 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. D5 556261 ADBG00000000.1 Bac0003525 Serinibacter salmoneus str. DSM 21801 "Serinibacter salmoneus str. DSM 21801 is a Gram-positive, rod-shaped bacterium that exhibits non-spore-forming characteristics and has an optimal growth temperature of 29.0°C. This microbe belongs to a lineage that is significant for its potential role in various ecological processes. ↵↵The Gram-positive nature of S. salmoneus indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this bacterial group and may confer certain advantages in specific environments, such as resilience to desiccation. The rod shape of the organism suggests a potential for a wide range of metabolic processes, which could be influenced by its environmental conditions. ↵↵Given its optimal temperature of 29.0°C, S. salmoneus likely thrives in moderately warm habitats, which may include environments such as soil or aquatic ecosystems. These conditions could facilitate interactions with other microorganisms, contributing to nutrient cycling and ecosystem dynamics. The absence of sporulation may suggest a reliance on stable environmental conditions for survival and reproduction, indicating that this species may play a role in environments where fluctuations in temperature or other stressors are minimal.↵↵Understanding the traits of Serinibacter salmoneus str. DSM 21801 provides insights into its potential ecological roles, particularly in nutrient cycling and microbial community dynamics within its preferred habitats. Further exploration of its metabolic capabilities could reveal additional ecological significance in microbial interactions." Bacillati Actinomycetota Actinomycetes Micrococcales Beutenbergiaceae Serinibacter Serinibacter salmoneus Gram-positive rod non-motile 29 mesophilic non-spore-forming 556530 PDJD00000000.1 Bac0003526 Mycobacterium kansasii ATCC 12478 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kansasii 557599 NC_022663.1 Bac0003527 Glaesserella parasuis SH0165 "Glaesserella parasuis SH0165 is a Gram-negative, rod-shaped bacterium that is primarily associated with host environments, exhibiting both aerobic and facultative anaerobic growth capabilities. This microbe belongs to the family Pasteurellaceae and is known to inhabit the respiratory tracts of various hosts, suggesting a potential role in host-associated microbial communities.↵↵The characteristic rod shape and Gram-negative staining of G. parasuis SH0165 indicate its structural and biochemical properties, which may influence its interactions within the host environment. As an aerobe capable of facultative anaerobic growth, this organism can adapt to varying levels of oxygen availability, potentially allowing it to thrive in diverse microenvironments within the host.↵↵Understanding the ecological niche of Glaesserella parasuis SH0165 may provide insights into its role in maintaining microbial homeostasis or contributing to host health or disease dynamics. Its ability to inhabit the respiratory tract alongside other microbial flora underscores the complexity of host-associated ecosystems, where interspecies interactions could impact both microbial function and host physiology. Further research into this bacterium's ecological implications could elucidate its contributions to the overall health of its host and the dynamics of the microbial community within the respiratory system." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 557723 NC_011852.1 Bac0003528 Burkholderia pseudomallei 576 "Burkholderia pseudomallei 576 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and requires oxygen for growth, classifying it as an aerobic organism. This species is known for its resilience in soil and water, often found in tropical and subtropical regions where it can persist in diverse ecological niches. The rod shape of B. pseudomallei 576 may contribute to its motility and ability to colonize various substrates in its terrestrial habitat. ↵↵The aerobic nature of this microbe suggests a reliance on oxygen for metabolic processes, which may influence its distribution and interactions within the ecosystem. The capacity of B. pseudomallei 576 to inhabit terrestrial environments indicates its potential role in nutrient cycling and its interactions with other microbial communities in soil. Additionally, the presence of this bacterium in the soil matrix can have implications for plant health, soil ecology, and biogeochemical processes, as it may engage in complex relationships with other soil microorganisms. Understanding the ecological role of Burkholderia pseudomallei 576 within its terrestrial habitat could provide insights into its environmental adaptability and interactions in microbial consortia." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 557724 ACCE00000000.1 Bac0003529 Cereibacter sphaeroides KD131 "Cereibacter sphaeroides KD131 is a Gram-negative, rod-shaped bacterium that typically forms chains and is capable of utilizing both photosynthetic processes and anaerobic respiration for energy. This microbe thrives optimally at a temperature of 25.0°C and exhibits versatility in its oxygen requirements, functioning as both an aerobe and an anaerobe. ↵↵Cereibacter sphaeroides KD131 has been isolated from various habitats, suggesting a broad ecological niche. Its unique metabolic capabilities enable it to adapt to fluctuating environmental conditions, allowing for survival in diverse ecosystems. The photosynthetic ability of this bacterium indicates that it may play a critical role in carbon cycling within its habitats, contributing to the primary production of organic matter. ↵↵Moreover, the ability to exist in both aerobic and anaerobic conditions suggests that Cereibacter sphaeroides KD131 could be instrumental in biogeochemical processes, potentially influencing nutrient dynamics in its environment. Understanding the ecological roles of such versatile microorganisms can provide insights into their contributions to ecosystem function and stability." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 557760 NC_011960.1 Bac0003530 Chryseobacterium angstadtii str. KM "Chryseobacterium angstadtii strain KM is a Gram-negative, rod-shaped bacterium that exhibits an aerobic mode of respiration and is characterized by its non-spore-forming nature. As a member of the genus Chryseobacterium, this strain is distinguished by its morphology and metabolic requirements, which indicate its adaptation to oxygen-rich environments. The rod shape of C. angstadtii suggests an ability to navigate through its habitat, potentially facilitating its interactions with other microorganisms and substrates.↵↵Given its aerobic lifestyle, C. angstadtii str. KM may play a role in the degradation of organic compounds in oxygenated environments, contributing to the cycling of nutrients. The non-spore-forming characteristic implies that this strain relies on vegetative growth for survival and reproduction, which may influence its ecological niche and interactions within microbial communities. Understanding the environmental roles of C. angstadtii can enhance our knowledge of microbial diversity and functionality in various ecosystems, particularly those that are enriched with organic matter and oxygen." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium angstadtii Gram-negative rod non-motile aerobic non-spore-forming 558151 LFND00000000.1 Bac0003531 Corynebacterium doosanense CAU 212 = DSM 45436 "Corynebacterium doosanense CAU 212 (also known as DSM 45436) is a Gram-positive, rod-shaped bacterium that requires aerobic conditions for growth and is characterized by its non-spore-forming nature. This organism belongs to the genus Corynebacterium, which is known for its diverse metabolic capabilities and ecological roles in various environments. ↵↵Corynebacterium doosanense's aerobic requirement suggests that it may play a significant role in environments where oxygen is readily available, potentially contributing to the degradation of organic matter or participating in other microbial communities. The absence of sporulation indicates that this species may rely on other survival strategies in response to environmental stresses, such as nutrient limitation or changes in moisture levels. Understanding the physiological traits of C. doosanense can provide insights into its potential interactions within its habitat and its role in biogeochemical cycles.↵↵Further characterization of this organism may reveal its specific ecological niches and contributions to microbial diversity. Given the limited information on its ecological impact, future studies could explore its interactions with other microorganisms or its potential applications in biotechnology or environmental microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium doosanense Gram-positive rod non-motile aerobic non-spore-forming 558173 NZ_CP006764.1 Bac0003532 Delftia lacustris "Delftia lacustris is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at 25.0°C. This organism is notable for its ability to inhabit freshwater environments, specifically lakes, which is reflected in its species name. As a member of the genus Delftia, it contributes to the microbial diversity of aquatic ecosystems.↵↵The Gram-negative nature of Delftia lacustris indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interaction with the environment and other microorganisms. Its rod shape may confer certain advantages in motility and nutrient uptake, facilitating its adaptation to the aqueous habitats it occupies.↵↵While the specific ecological roles of Delftia lacustris are not detailed in the provided traits, its presence in freshwater systems suggests it may participate in various biogeochemical processes. Such processes could include the degradation of organic matter or interactions with other microbial communities, potentially influencing nutrient cycling within these ecosystems. Understanding the characteristics of Delftia lacustris may provide insights into the functional dynamics of freshwater microbiomes, particularly in the context of environmental change and ecosystem health." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia lacustris Gram-negative rod 25 mesophilic non-spore-forming 558537 FNPE00000000.1 Bac0003533 Shewanella chilikensis str. JC5 "Shewanella chilikensis str. JC5 is a Gram-negative, rod-shaped bacterium that does not form spores and exhibits optimal growth at 29.0°C. As a member of the Shewanella genus, this strain is likely to possess metabolic versatility, which is characteristic of many Shewanella species. These bacteria are known for their ability to reduce metals and may play important roles in biogeochemical cycles, particularly in aquatic environments.↵↵The non-spore-forming nature of Shewanella chilikensis str. JC5 suggests that it relies on vegetative growth for survival, which can be influenced by environmental conditions such as temperature and nutrient availability. The optimal growth temperature of 29.0°C indicates a preference for mesophilic conditions, which aligns with its potential habitat in freshwater or marine ecosystems where temperatures typically fluctuate within this range.↵↵In terms of ecological implications, Shewanella chilikensis str. JC5 may contribute to the degradation of organic materials and the cycling of nutrients in its environment. Its metabolic capabilities could enable it to interact with various substrates, including those containing metal ions, thereby influencing the surrounding microbial community dynamics and contributing to the overall health of the ecosystem. Further studies could elucidate the specific roles and interactions of this strain in its natural habitat, offering insights into its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella chilikensis Gram-negative rod 29 mesophilic non-spore-forming 558541 QJSY00000000.1 Bac0003534 Kineococcus rhizosphaerae str. DSM 19711 Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Kineococcus Kineococcus rhizosphaerae 29 mesophilic 559628 PVZF00000000.1 Bac0003535 Tistlia consotensis USBA 355 "Tistlia consotensis USBA 355 is a Gram-positive, rod-shaped bacterium that demonstrates aerobic growth, thriving optimally at a temperature of 29.0 °C. This organism is characterized by its non-spore-forming nature, indicating that it does not produce spores as a means of survival under adverse conditions. The Gram-positive classification suggests that T. consotensis possesses a thick peptidoglycan layer in its cell wall, which is typical of many bacteria within this group and may influence its susceptibility to certain antibiotics.↵↵The aerobic requirement implies that T. consotensis relies on oxygen for its metabolic processes, positioning it within environments that support aerobic respiration. This oxygen dependency may limit its ecological niches to those with sufficient oxygen levels, potentially influencing its distribution in various habitats.↵↵Given its specific growth conditions, Tistlia consotensis may play a role in particular biogeochemical cycles, contributing to organic matter decomposition in aerobic environments. Further exploration of its metabolic capabilities could uncover its potential interactions within microbial communities or its role in nutrient cycling, providing insights into the dynamics of ecosystems where this microbe is prevalent." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodovibrionaceae Tistlia Tistlia consotensis Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 560819 FWZX00000000.1 Bac0003536 Anaerococcus hydrogenalis DSM 7454 "Anaerococcus hydrogenalis DSM 7454 is a Gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites across different species, including the skin, respiratory, gastrointestinal, and genitourinary tracts, as an Obligate Anaerobe. The Gram-positive characteristic is due to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram staining procedure. The cocci shape is typical of many anaerobic bacteria, allowing for efficient exchange of nutrients and waste products. As a Chemoheterotroph, Anaerococcus hydrogenalis DSM 7454 relies on external sources of organic compounds for energy and carbon, breaking down these molecules through fermentation processes. The mesophilic temperature preference of Anaerococcus hydrogenalis DSM 7454 indicates that it grows best in moderate temperatures, typically between 20-45°C, which is consistent with its presence in human and animal body sites. The ability to inhabit various body sites is a testament to its adaptability and versatility. As an Obligate Anaerobe, Anaerococcus hydrogenalis DSM 7454 is strictly dependent on the absence of oxygen for growth and survival, making it well-suited to environments with low oxygen levels, such as the gastrointestinal tract. Anaerococcus hydrogenalis DSM 7454 plays a significant role in the production of short-chain fatty acids, particularly butyrate, which is an important energy source for colonic epithelial cells, contributing to the maintenance of a healthy gut microbiome. Its ability to produce hydrogen gas as a byproduct of metabolism has also sparked research into its potential applications in biotechnological processes, such as the production of biofuels and bioproducts." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus hydrogenalis Positive Cocci Obligate anaerobe 561177 ABXA00000000.1 Bac0003537 Maribacter arcticus "Maribacter arcticus is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0 °C and requires oxygen for growth, categorizing it as an aerobic microbe. This marine bacterium has garnered interest due to its adaptation to cold environments, particularly in polar and subpolar regions. ↵↵The Gram-negative nature of M. arcticus suggests a complex cell wall structure, typically characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. Such structural features are common in many bacteria that inhabit marine ecosystems, potentially conferring advantages in nutrient uptake and interaction with other microorganisms.↵↵The preference of M. arcticus for cooler temperatures reflects its adaptation to specific ecological niches, where it may play a role in nutrient cycling and microbial community dynamics in cold ocean waters. Understanding the physiological traits of M. arcticus can provide insights into how marine bacteria adapt to their environments, particularly in the context of climate change and shifting ocean temperatures. As such, the study of this microbe may reveal broader implications for microbial ecology in polar marine ecosystems, emphasizing the resilience and versatility of life in extreme conditions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter arcticus Gram-negative rod non-motile aerobic 16 psychrotolerant 561365 FUYL00000000.1 Bac0003538 Dethiosulfovibrio salsuginis "Dethiosulfovibrio salsuginis is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on its anaerobic environment for survival and persistence. The rod shape of Dethiosulfovibrio salsuginis may facilitate motility and nutrient uptake, enhancing its adaptability to the specific niches it occupies.↵↵The anaerobic requirement indicates that Dethiosulfovibrio salsuginis likely plays a role in biogeochemical cycles where oxygen is limited. Its metabolic pathways may involve the reduction of sulfur compounds, aligning with its genus name and suggesting a potential function in sulfur cycling within its environment. This could have implications for understanding nutrient dynamics in anaerobic ecosystems, such as marine sediments or other environments where sulfur compounds are prevalent.↵↵Overall, Dethiosulfovibrio salsuginis exemplifies the complex interactions of anaerobic microorganisms in nutrient cycling, highlighting the importance of such organisms in maintaining the ecological balance in their respective habitats. Further research into its metabolic processes could elucidate its role in ecosystem functioning and contribute to our understanding of microbial diversity in anaerobic environments." Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio Dethiosulfovibrio salsuginis Gram-negative rod anaerobic 29 mesophilic non-spore-forming 561720 FXBB00000000.1 Bac0003539 Bacillus safensis str. sami Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus safensis assembly site of the Phoenix spacecraft 561879 NZ_CP032830.1 Bac0003540 Rickettsia peacockii str. Rustic "Rickettsiae are obligate intracellular Gram-negative bacteria mostly found in arthropods, some of which cause mild to severe diseases in humans. Rocky Mountain spotted fever (RMSF) was first recognized in the early 1900s as being due to R. rickettsii in Rocky Mountain wood ticks (Demacentor andersoni). Transmission to humans occurs principally through bites of infected ticks. Interestingly, in the Bitterroot Valley in western Montana almost all cases of RMSF are due to ticks collected on the west side; ticks on the east side of the valley, while infected with rickettsiae, do not cause disease in man. R. peacockii seems only to occur in ovarian tissues of D.andersoni; male ticks have not been seen to be infected. R.peacockii does not make a functional ompA, which may be a reason for its endosymbiotic nature in ticks (R.rickettsii is pathogenic in ticks). It is hypothesized that a high prevalence of R. peacockii in tick ovaries might interfere with maintenance and transmission of R. rickettsii. Strain Rustic (also known as DAE100R) was isolated from Rustic, Colorado (adapted from PubMed 9103635 and 15528527). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia peacockii Rustic Negative Rod No 1 2 Aerobe Mesophilic HostAssociated Symbiotic Dermacentor andersoni Nonsporulating No 562019 NC_012730.1 Bac0003541 Segatella oris C735 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella oris 563008 ADDV00000000.1 Bac0003542 Rothia dentocariosa M567 "Rothia dentocariosa M567 is a Gram-positive cocci bacterium that demonstrates aerobic respiration. This microbe is primarily associated with host environments, suggesting a potential role in the microbiota of mammals, particularly in the oral cavity. Rothia dentocariosa is known for its association with dental health, as it has been isolated from dental plaque and other oral sites, indicating its presence in the complex ecosystem of the human mouth.↵↵The coccoid shape of Rothia dentocariosa M567 may contribute to its ability to colonize specific niches within the host environment, allowing it to interact with various microbial communities. The aerobic nature of this microbe suggests that it thrives in oxygen-rich environments, which is typical for many oral flora that coexist with other microorganisms in the presence of saliva and other oxygenated fluids.↵↵Understanding the characteristics of Rothia dentocariosa M567 is crucial for elucidating its potential roles in oral health and disease. The presence of this bacterium in host-associated habitats highlights its possible involvement in maintaining a balanced oral microbiome, where it may contribute to competitive interactions with other bacteria and influence overall oral health dynamics. Further exploration of its ecological interactions may provide insights into its contributions to host-associated microbial communities." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia dentocariosa Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living 563032 ADDW00000000.1 Bac0003543 Streptococcus sp. C300 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. C300 563036 ACRJ00000000.1 Bac0003544 Sulfurimonas autotrophica DSM 16294 "Sulfurimonas autotrophica (strain ATCC BAA-671 / DSM 16294 / JCM 11897 / OK10) is a mesophilic, sulfur- and thiosulfate-oxidizing, Gram-negative bacterium isolated from deep-sea sediments at the Hatoma Knoll in the Mid-Okinawa Trough hydrothermal field. Cells are short rods, each being motile by means of a single polar flagellum. Sulfurimonas autotrophica grows between 10-40 degrees Celsius with an optimum at 25 degrees Celsius and pH between 4.5-9.0 with an optimum pH 6.5. It grows chemolithoautotrophically with elemental sulfur, sulfide and thiosulfate as sole electron donors and oxygen as electron acceptor. Molecular hydrogen does not support growth. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/genomeprj/31347). (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas autotrophica DSM 16294 Negative Rod Yes 1 2 Aerobic Mesophilic Marine - Sediment Free living Nonsporulating No 563040 NC_014506.1 Bac0003545 Bilophila wadsworthia 3_1_6 "Bilophila wadsworthia 3_1_6 is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, acting as a chemoheterotroph and exhibiting obligate anaerobic behavior. This microorganism is predominantly found in the human gastrointestinal tract, particularly in the large intestine, where it aids in the digestion of complex carbohydrates and the production of short-chain fatty acids. The gram-negative staining characteristic indicates that Bilophila wadsworthia has a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that contribute to its pathogenic potential and immune evasion. As a rod-shaped bacterium, it has a streamlined morphology that allows efficient movement and colonization within the gut environment. Being mesophilic, it prefers moderate temperature conditions, typically around 30-37°C, which aligns with the typical human body temperature, providing an optimal growth environment. As a chemoheterotroph, Bilophila wadsworthia derives its energy from organic compounds, utilizing various substrates found in the gut, including dietary fibers. Its obligate anaerobic nature means that it thrives in environments devoid of oxygen, relying on fermentation pathways to metabolize organic materials, which is essential for maintaining the gut microbiota balance and overall digestive health. Bilophila wadsworthia has gained attention due to its association with certain gastrointestinal diseases, including inflammatory bowel disease and colorectal cancer. This microbe plays a significant role in gut ecology, with its metabolic activities influencing the overall composition of gut microbiota. Interestingly, research has shown that changes in the abundance of Bilophila wadsworthia can correlate with dietary shifts, emphasizing the interconnection between diet, gut health, and microbiome dynamics." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia Negative Anaerobe 563192 ADCP00000000.2 Bac0003546 Pseudomonas coronafaciens pv. oryzae str. 1_6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 563797 NZ_CP046035.1 Bac0003547 Roseicitreum antarcticum Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Roseicitreum Roseicitreum antarcticum 564137 FNOM00000000.1 Bac0003548 Brachyspira hyodysenteriae WA1 "Brachyspira hyodysenteriae is an anaerobic spirochete that is the causative agent of swine dysentery, severe inflammation of the large intestine with a bloody mucous diarrhea of pigs. The bacterium can survive for several weeks in cold moist conditions but not under warm dry conditions. It spreads slowly, building up in numbers as the dose rate of the causal agent builds up in the environment. Pigs that recover develop a low immunity and rarely suffer from the disease again. It can be spread by other organisms (flies, mice, birds and dogs) or external mechanical factors; its main habitat is the porcine cecum and colon. It is chemotactically attracted to mucin which it penetrates with a corkscrew-like motility. Many of the predicted CDS show a higher match to Escherichia (36%) and Clostridium (15%) than to other spirochete CDS (only 5%), and it is thought that their genes were probably acquired via horizontal gene transfer. About half of these Escherichia and Clostridium-like CDS are involved in metabolism, suggesting they enhance survival in the large intestine. It also has 123 predicted transport CDS, pathways for glycolysis, gluconeogenesis, a non-oxidative pentose phosphate pathway, nucleotide metabolism, lipopolysaccharide biosynthesis and a respiratory electron transport chain. ATP is probably generated by sugar metabolism. It has 314 putative virulence factors, including proteases, hemolysins, ankyrin proteins, potential type III secretion system and CDS involved in chemotaxis (adapted from http://www.thepigsite.com/diseaseinfo/116/swine-dysentery and PubMed 19262690). (HAMAP: BRAHW)" Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae WA1 Negative Spirilla No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pig Singles Nonsporulating No 565034 NC_012225.1 Bac0003549 Bifidobacterium longum subsp. infantis 157F str. 157F-NC "Bifidobacterium longum subsp. infantis 157F str. 157F-NC is a Gram-positive, rod-shaped bacterium that typically arranges itself in clusters, pairs, or as single cells. This strain is classified as an anaerobe, indicating its requirement for environments devoid of oxygen, which aligns with its natural habitat being host-associated. Optimal growth for this microbe occurs at a temperature of 37.0°C, a condition that closely resembles the human body temperature, further emphasizing its adaptation to life within a host organism.↵↵As a member of the Bifidobacterium genus, B. longum subsp. infantis is known for its role in the human gut microbiota, particularly in infants where it contributes to gut health and development. The presence of this strain in the gastrointestinal tract is associated with various beneficial effects, including the fermentation of dietary fibers and the production of short-chain fatty acids, which can influence host metabolism and immune function.↵↵Understanding the characteristics of B. longum subsp. infantis 157F str. 157F-NC offers insight into its ecological niche and functional significance in the intestinal microbiome, particularly in early life stages. The strain's anaerobic nature and specific temperature preference suggest a highly specialized role in maintaining gut homeostasis and facilitating nutrient absorption, underscoring the intricate relationship between host and microbiota." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 565040 NC_015052.1 Bac0003550 Caulobacter vibrioides NA1000 "Caulobacter vibrioides NA1000 is a Gram-negative, rod-shaped bacterium that typically exists as single cells, demonstrating a distinctive morphology within its genus. This microbe thrives in aquatic environments, where it plays a significant role in the microbial community. Its optimal growth temperature is approximately 35.0 °C, suggesting a preference for mesophilic conditions, which are common in many freshwater ecosystems.↵↵As an aerobic organism, C. vibrioides NA1000 requires oxygen for its metabolic processes, positioning it within the diverse group of microorganisms that contribute to nutrient cycling in aquatic habitats. The single-cell arrangement allows for efficient nutrient uptake and adaptability to varying environmental conditions, enhancing its survival in fluctuating ecosystems.↵↵The ecological role of Caulobacter vibrioides NA1000 may extend beyond simple nutrient cycling; its presence in aquatic environments may influence biofilm formation and surface colonization dynamics, which are crucial for the stability and functionality of these ecosystems. The ability of this bacterium to thrive in aerobic conditions, coupled with its morphological characteristics, suggests it may engage in complex interactions with other microbial species, thereby contributing to the overall biodiversity and ecological resilience of its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides Negative Rod Yes 1 2 Aerobe 35 Mesophilic Aquatic Free living Singles 565050 NC_011916.1 Bac0003551 Streptomyces sp. SM17 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SM17 565560 NZ_CP029341.1 Bac0003552 Enterococcus casseliflavus EC20 "Enterococcus casseliflavus EC20 is a Gram-positive coccus that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This bacterium is characterized by its spherical shape and typically occurs in pairs or short chains, which is common among enterococci. The facultative anaerobic nature of E. casseliflavus EC20 suggests its adaptability to varying oxygen levels, potentially enabling it to colonize diverse ecological niches.↵↵As a member of the Enterococcus genus, E. casseliflavus EC20 is part of a group well-known for its resilience in harsh conditions, including resistance to certain antibiotics. This resilience may play a role in its survival within complex microbial communities, such as those found in the gastrointestinal tracts of humans and animals, as well as in various environmental settings.↵↵The ability of E. casseliflavus EC20 to thrive in fluctuating oxygen conditions could also contribute to its ecological significance in nutrient cycling and its interactions with other microorganisms. These interactions may facilitate the breakdown of organic matter and the recycling of nutrients, underscoring the importance of E. casseliflavus EC20 in maintaining microbial diversity and ecosystem health. Further studies could illuminate the specific roles this strain plays within its ecological context." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe 565655 NC_020995.1 Bac0003553 Aliivibrio sifiae str. ATCC 33715 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio sifiae 566293 MSCO00000000.1 Bac0003554 gamma proteobacterium NOR5-3 Pseudomonadati Pseudomonadota Gammaproteobacteria gamma proteobacterium NOR5-3 566466 ACCX00000000.1 Bac0003555 Escherichia coli W "Escherichia coli W is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in all body sites of various species, including humans, animals, and insects, and is a facultative anaerobe. As a gram-negative bacterium, E. coli W has a thin peptidoglycan layer in its cell wall, which is responsible for its negative stain. Its rod shape allows for efficient movement and absorption of nutrients. The mesophilic temperature preference of E. coli W enables it to grow best in temperatures between 20-45°C, making it well-suited for a wide range of environments. As a chemoheterotroph, E. coli W requires organic compounds for energy and carbon, which it obtains by breaking down complex molecules. Its presence in all body sites of various species highlights its adaptability and ability to thrive in diverse environments. As a facultative anaerobe, E. coli W can grow in both aerobic and anaerobic conditions, allowing it to survive in a variety of niches. The ability of E. coli W to inhabit all possible body sites is a testament to its remarkable versatility. E. coli W has been found to play a crucial role in the development of biofilms, which are complex communities of microbes that can adhere to surfaces and are notoriously difficult to remove. Researchers have discovered that E. coli W can form biofilms on medical devices, such as catheters and prosthetics, which can lead to serious infections and complications." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 566546 NC_017636.1 Bac0003556 Hungatella hathewayi DSM 13479 "Hungatella hathewayi DSM 13479 is a Gram-negative, rod-shaped bacterium that displays the capability for sporulation and is classified as an obligate anaerobe. This species thrives optimally at a temperature of 37.0°C, which aligns with its ecological niche within the animal intestinal microflora. As a chemoheterotroph, Hungatella hathewayi derives its energy from organic compounds, a trait that facilitates its survival in the nutrient-rich environment of the intestine.↵↵The ability of Hungatella hathewayi to sporulate is particularly noteworthy, as it allows this microbe to withstand unfavorable conditions, potentially aiding in its persistence within the gastrointestinal tract. This sporulation capability may also play a role in its interactions with other gut microbiota, contributing to the dynamic ecosystem of the intestinal microflora. Understanding the ecological role of Hungatella hathewayi within the gut environment could provide insights into its contributions to digestive health and microbial balance.↵↵In summary, Hungatella hathewayi DSM 13479 exemplifies a specialized adaptation to the anaerobic conditions of the intestinal habitat, where its sporulation and metabolic strategies might influence both its survival and the overall microbial community dynamics within the host." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi Negative Rod No 1 Obligate anaerobe 37 Chemoheterotroph Animal intestinal microflora Sporulating 566550 ACIO00000000.1 Bac0003557 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 "Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 is a gram-positive, rod-shaped bacterium that is classified as a mesophile, thriving optimally at moderate temperatures. This species falls under the category of heterotrophs, relying on organic compounds for its carbon and energy needs. Bifidobacterium catenulatum is an obligate anaerobe, meaning it requires an oxygen-free environment for its growth and metabolism. Bifidobacterium catenulatum is commonly found in various human body sites, primarily residing in the gut, where it plays a crucial role in maintaining intestinal health. It contributes to the fermentation of dietary fibers and complex carbohydrates, producing beneficial short-chain fatty acids such as acetate and propionate, which nourish colon cells and help regulate gut health. This microbe is also present in the human oral cavity and other mucosal surfaces, although its abundance varies across individuals and is influenced by dietary habits, age, and health status. The ability of Bifidobacterium catenulatum to ferment a wide range of carbohydrates makes it an essential player in the gut microbiome, supporting digestion and modulating immune responses. Additionally, its probiotic properties have been shown to inhibit pathogenic bacteria, potentially reducing the risk of gastrointestinal infections. Furthermore, strains of Bifidobacterium, including B. catenulatum, are often utilized in the production of functional foods and dietary supplements aimed at enhancing gut health. Studies indicate that supplementation with this bacterium can improve gut microbiota diversity and may positively influence metabolic conditions such as obesity and type 2 diabetes, demonstrating its potential applications in health and wellness." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium catenulatum Positive Anaerobe 566552 ABXY00000000.1 Bac0003558 Bradyrhizobium sp. ORS 375 str. ORS375 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. ORS 375 566679 CAFI00000000.1 Bac0003559 Marinobacterium lutimaris "Marinobacterium lutimaris is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This microbe, belonging to the broader Marinobacter genus, is adapted to marine environments, suggesting potential roles in oceanic microbial communities. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer specific advantages in nutrient uptake and environmental resilience.↵↵The optimal growth temperature of 29.0°C positions Marinobacterium lutimaris within the mesophilic range, indicating its preference for moderately warm conditions typical of many marine habitats. This trait may also influence its metabolic activities and interactions with other marine organisms, contributing to the cycling of nutrients in its ecosystem.↵↵As a member of marine microbial communities, Marinobacterium lutimaris may participate in biogeochemical processes, including the degradation of organic matter and the cycling of carbon and nitrogen. Its rod shape could facilitate motility and colonization in diverse marine niches, potentially enhancing its ecological role in nutrient dynamics. Understanding the specific contributions of Marinobacterium lutimaris to marine ecosystems could provide insights into microbial interactions and the overall health of oceanic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinobacterium Marinobacterium lutimaris Gram-negative rod 29 mesophilic 568106 FNVQ00000000.1 Bac0003560 Moorena bouillonii PNG str. PNG5-198 Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Moorena Moorena bouillonii 568701 MKZS00000000.1 Bac0003561 Bordetella bronchiseptica 253 "Bordetella bronchiseptica 253 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 35.0 °C and is classified as an aerobe, requiring oxygen for survival. This microbe is host-associated, indicating a relationship with specific hosts, which may influence its ecological niche and interactions within host environments.↵↵As a member of the Bordetella genus, B. bronchiseptica is known to inhabit the respiratory tracts of various mammals, including domestic animals. The bacterium's rod shape and aerobic metabolism suggest adaptations that facilitate its survival and proliferation in oxygen-rich environments, such as those found within the respiratory systems of its hosts.↵↵Understanding the environmental conditions that support the growth of Bordetella bronchiseptica 253 may provide insights into its ecological roles, particularly in relation to host health and disease dynamics. The specificity of its habitat and growth requirements might indicate a finely tuned relationship with its hosts, potentially influencing both microbial community structures and host immune responses. This highlights the importance of studying host-associated microbes, as they can serve as indicators of environmental changes and offer clues to the intricate balance of host-microbe interactions." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica Negative Rod Yes 1 2 Aerobe 35 Mesophilic HostAssociated 568707 NC_019382.1 Bac0003562 Herbaspirillum aquaticum str. IEH 4430 "Herbaspirillum aquaticum str. IEH 4430 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for moderate environmental conditions. The aerobic nature of H. aquaticum suggests that it relies on oxygen for its metabolic processes, which is typical for many members of the genus Herbaspirillum.↵↵As a representative of the Herbaspirillum genus, this strain is likely to be involved in various ecological processes, particularly in nutrient cycling within aquatic environments. Its adaptation to aerobic conditions and optimal growth temperature may enable it to play a role in the degradation of organic matter in freshwater ecosystems, thus contributing to the overall health and balance of these environments. The ability to thrive in such specific conditions may also provide insights into the microbial diversity and functional capabilities present in aquatic habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum aquaticum Gram-negative rod aerobic 29 mesophilic 568783 NJGV00000000.1 Bac0003563 Streptococcus suis BM407 "Streptococci are non-motile, Gram-positive cocci with widely varying pathogenic potential that occur in pairs or chains. Streptococcus suis is a major porcine pathogen in many countries. It causes serious zoonotic diseases (diseases which can be transmitted naturally between animals and humans) such as meningitis, septicaemia, endocarditis, arthritis, and septic shock in both pigs and human beings, and mortality is high. There are 35 serotypes of S.suis, of which serotype SS2 is the most prevalent. Human infection is almost always associated with exposure to pigs or their food products. Infection is rare in Europe and N. America, while infections rates with S. suis are greater in S.E. Asia and China. Meningitis is the most common presentation in humans, but septicemia and endocarditis are also seen. Strain BM407 is ST1 by MLST, and was isolated from cerebrospinal fluid from a human case of meningitis in Ho Chi Minh City, Vietnam in 2004. It is resistant to trimethoprim-sulfamethoxazole, tetracycline, erythromycin, azithromycin and chloramphenicol and susceptible to penicillin, ceftriaxone and vancomycin. It contains an almost identical pathogenicity island to that previously found in human pathogenic strains (STRS2 and STRSY), although it was probably acquired. This island is not however absolutely required for human pathogenicity (adapted from PubMed 19603075). (HAMAP: STRS4)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis BM407 Positive Cocci No 1 1 Facultative 37 Mesophilic Multiple Free living Homo sapiens Chains-Pairs Nonsporulating Yes 568814 NC_012923.1 Bac0003564 Brucella microti CCM 4915 "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucella microti was recently isolated from diseased voles in the Czech Republic (Microtus arvalis), and has been more recently isolated from foxes and apparently free-living in soil in Czech soil. Unlike almost all other Brucella species known to date it is a fast growing and biochemically active organism. Comparison with its closest relative, B.suis 1330 (BRUSU) showed near-perfect co-linearity. The major difference is a 12 kb insertion present in B.microti which is thought to have little phenotypical consequence. There are 4 genes inactive in all other Brucella species studied to date that are active in B.microti and Ochrobactrum anthropi (OCHA4, a close relative), as well as a difference in the 23S rRNA that is also shared with another fast-growing strain, Brucella inopinata. However, how such small differences in gene content result in very different phenotypes has to be determined, and will complicate the task of identifying virulence determinants in Brucella (adapted from PMID 18680668 and 19653890). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella microti CCM 4915 Negative Rod No 1 2 Aerobic Mesophilic Multiple Free living Homo sapiens Chains-Pairs-Singles Nonsporulating 568815 NC_013119.1 Bac0003565 Acidaminococcus intestini RyC-MR95 str. RYC-MR95 "Acidaminococcus intestini RyC-MR95 str. RYC-MR95 is a Gram-negative, anaerobic cocci that plays a role in the gut microbiome. This microbe is notable for its ability to thrive in an oxygen-deprived environment, which is characteristic of many members of the gut microbiota. The coccoid morphology of A. intestini suggests a potential for forming clusters, which may facilitate its survival and interaction with other microbial species in the intestinal niche.↵↵As an anaerobic bacterium, A. intestini is adapted to the low-oxygen conditions of the intestines, where it may contribute to various metabolic processes, including the fermentation of amino acids and production of short-chain fatty acids. Such metabolic activities can influence gut health and may play a role in regulating host metabolism.↵↵Understanding the properties of A. intestini, including its anaerobic nature and cocci shape, provides insights into the complex interactions within the intestinal microbiome. This microbe's adaptation to anaerobic conditions highlights the dynamic nature of microbial communities in the gut, emphasizing the importance of anaerobes in maintaining a balanced and functional microbiota that supports host health." Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus intestini Negative Cocci Anaerobe 568816 NC_016077.1 Bac0003566 Alteribacillus persepolensis "Alteribacillus persepolensis is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This organism thrives optimally at a temperature of 37.0 degrees Celsius and exhibits an aerobic metabolism, indicating that it requires oxygen for growth. The spore-forming capability of A. persepolensis suggests an adaptation to survive in challenging environmental conditions, potentially allowing it to endure fluctuations in nutrient availability or other stressors.↵↵The rod shape and Gram-positive nature of A. persepolensis are indicative of its cellular structure, which typically includes a thick peptidoglycan layer in the cell wall, a feature that may contribute to its resilience in various environments. Given its aerobic requirement, this bacterium likely occupies ecological niches where oxygen is readily available, potentially influencing the microbial community dynamics in such habitats.↵↵A unique ecological insight into A. persepolensis may lie in its role within soil or sediment environments, where spore formation could facilitate soil health and nutrient cycling. Additionally, its optimal growth temperature aligns with the conditions found in various terrestrial ecosystems, suggesting it may be well-adapted to life in the rhizosphere or other microhabitats where organic matter decomposition occurs. Further research could elucidate its specific ecological functions and interactions with other microorganisms in these environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alteribacillus Alteribacillus persepolensis Gram-positive rod aerobic 37 mesophilic spore-forming 568899 FNDK00000000.1 Bac0003567 Staphylococcus microti str. DSM 22147 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus microti 569857 JXWY00000000.1 Bac0003568 Staphylococcus microti Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus microti 569857 UHDT00000000.1 Bac0003569 Methylovirgula ligni str. BW863 "Methylovirgula ligni strain BW863 is a Gram-negative, rod-shaped bacterium characterized by its adaptation to a low-temperature environment, with an optimal growth temperature of 16.0 °C. This psychrotolerant microbe is likely to thrive in cold habitats, where it may play a role in the degradation of organic compounds, particularly in environments with limited nutrient availability. ↵↵The rod shape of Methylovirgula ligni str. BW863 suggests a potential for motility, which may aid in its survival and colonization within its ecological niche. Gram-negative bacteria, including this strain, are known for their complex cell wall structure, which can influence their interactions with surrounding microorganisms and abiotic factors in the environment. ↵↵Given its specific adaptation to lower temperatures, Methylovirgula ligni str. BW863 may contribute to biogeochemical cycles in cold ecosystems, such as tundra soils or deep-sea environments. Its metabolic processes could facilitate the breakdown of organic matter, impacting carbon cycling and nutrient availability in these ecosystems. Further research into its metabolic pathways could provide insights into its role within microbial communities and its potential applications in biotechnology, particularly in bioremediation or bioenergy production in cold climates." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Beijerinckiaceae Methylovirgula Methylovirgula ligni Gram-negative rod non-motile 16 psychrotolerant 569860 QUMO00000000.1 Bac0003570 Wolbachia endosymbiont of Culex quinquefasciatus JHB Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Culex quinquefasciatus 569881 ABZA00000000.1 Bac0003571 Sphingobium faniae "Sphingobium faniae is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and exhibits optimal growth at 29.0°C. As a non-spore-forming organism, S. faniae relies on vegetative growth for reproduction, which is characteristic of many bacteria in its phylogenetic lineage.↵↵The Gram-negative nature of S. faniae suggests a complex cell wall structure that includes an outer membrane containing lipopolysaccharides, contributing to its distinctive biochemical properties. Its rod shape is typical of many bacteria, allowing for motility and surface attachment, which may be advantageous in its aerobic habitat.↵↵The preference for an optimal temperature of 29.0°C indicates that S. faniae may be well-suited for environments that are temperate, potentially including soil or aquatic ecosystems where such conditions are prevalent. This temperature range may also suggest that it could play a role in biogeochemical processes typical of temperate climates, such as nutrient cycling.↵↵The aerobic nature of S. faniae emphasizes its dependence on molecular oxygen for its metabolic processes, which may include the degradation of various organic compounds. This trait positions S. faniae as a potential player in bioremediation, particularly in environments contaminated with organic pollutants, where its metabolic capabilities could facilitate the breakdown of complex substances in the presence of oxygen. Thus, Sphingobium faniae may contribute to the ecological dynamics of its habitat by participating in the degradation of organic matter, thereby influencing nutrient availability and ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium faniae Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 570446 FMTU00000000.1 Bac0003572 Spiroplasma melliferum KC3 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma melliferum microaerophile 570509 NZ_AGBZ02000006.1 Bac0003573 Salimicrobium flavidum "Salimicrobium flavidum is a non-spore-forming, aerobic bacterium characterized as Gram-negative. This microbe thrives optimally at a temperature of 32.0°C, suggesting a potential preference for mesophilic environments. The Gram-negative nature of S. flavidum indicates the presence of a thin peptidoglycan layer and an outer membrane, which may play a role in its interactions with the surrounding environment and other microbial communities.↵↵As a strictly aerobic organism, S. flavidum requires oxygen for its metabolic processes, which aligns with its habitat in oxygen-rich environments. The combination of its Gram-negative status and aerobic metabolism may contribute to its ecological niche, where it might participate in various biogeochemical cycles, particularly those involving organic matter degradation.↵↵Salimicrobium flavidum's specific growth temperature and oxygen requirements suggest adaptability to certain environmental conditions that may influence microbial community dynamics. Its presence could be indicative of particular ecological settings, such as soil or aquatic systems, where it may engage in nutrient cycling and potentially interact with other microorganisms, contributing to the overall functionality of the ecosystem. Understanding the traits of S. flavidum may provide insights into its role within microbial communities and its potential applications in biotechnology or environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salimicrobium Salimicrobium flavidum Gram-negative / Gram-positive aerobic 32 mesophilic non-spore-forming 570947 FTOC00000000.1 Bac0003574 Brucella rhizosphaerae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella rhizosphaerae 571254 NNRK00000000.1 Bac0003575 Aliiruegeria lutimaris Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Aliiruegeria Aliiruegeria lutimaris 571298 FNEK00000000.1 Bac0003576 Psychrobacter sp. G Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. G 571800 NC_021669.1 Bac0003577 Thalassobacillus cyri "Thalassobacillus cyri is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under aerobic conditions. This microorganism demonstrates an optimal growth temperature of 37.0°C, suggesting a preference for warm environments typically found in various marine ecosystems. ↵↵As a spore-forming organism, T. cyri possesses the ability to enter a dormant state, which may confer resilience against environmental stressors and contribute to its survival in fluctuating habitats. The Gram-positive nature of this bacterium indicates a thick peptidoglycan layer in its cell wall, which is a characteristic trait that can influence its susceptibility to certain antibiotics and its overall physiological characteristics.↵↵While specific ecological roles and interactions of T. cyri are not detailed, its adaptation to aerobic conditions suggests involvement in processes such as organic matter decomposition or nutrient cycling in marine environments. This characteristic positions T. cyri as a potentially important player in the dynamics of microbial communities, particularly in habitats where oxygen availability is high. Further research may elucidate the specific ecological niches occupied by T. cyri and its potential contributions to marine microbiomes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Thalassobacillus Thalassobacillus cyri Gram-positive rod aerobic 37 mesophilic spore-forming 571932 FNQR00000000.1 Bac0003578 Daejeonella lutea Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Daejeonella Daejeonella lutea 572036 FUYR00000000.1 Bac0003579 Bacillus cereus 03BB102 "Bacillus cereus 03BB102 is a gram-positive, rod-shaped bacterium that thrives optimally at mesophilic temperatures (20-45°C), categorizing it as a facultative anaerobe and a chemoheterotroph. As part of the Bacillus genus, this microbe exhibits a robust ability to form endospores, aiding its survival in diverse environments, including soil, water, and even food products. Gram-staining reveals its characteristic positive reaction, indicating a thick peptidoglycan layer in the cell wall, which not only provides structural integrity but also plays a crucial role in the bacterium's pathogenic potential. The rod shape facilitates rapid movement and adaptation to various environments. Bacillus cereus 03BB102 is notable for its versatility as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic conditions, thereby allowing it to colonize a variety of substrates. As a chemoheterotroph, it derives energy from organic compounds, which enables it to utilize a wide range of nutrients, contributing to its ability to grow in nutrient-rich substrates such as rice and other starchy foods. This strain is recognized for its role in foodborne illnesses, particularly in cases of food poisoning when improperly stored cooked rice is consumed. Additionally, it produces various cytotoxins which can lead to gastrointestinal disturbances. Beyond its pathogenic potential, Bacillus cereus also has applications in biotechnology, as some strains are explored for use in biopesticides and the production of enzymes for industrial applications. Its capacity to form spores not only aids in its resilience but also opens avenues for its development in bioengineering contexts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus 03BB102 Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Homo sapiens Chains Sporulating Yes 572264 NC_012472.1 Bac0003580 Candidatus Hamiltonella defensa 5AT "Candidatus Hamiltonella defensa 5AT is a Gram-negative, rod-shaped microbe that is associated with specific host organisms. This bacterium is notable for its association with insects, where it is believed to play a role in the host's physiology and potentially its defense mechanisms. ↵↵As a member of the Hamiltonella genus, Candidatus Hamiltonella defensa 5AT is characterized by its close relationships with insect hosts, suggesting intricate co-evolutionary dynamics. The Gram-negative nature of this microbe indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group and may influence its interactions with host immune systems. While specific pathogenicity details remain unspecified, the association with host organisms hints at possible mutualistic or protective functions that could enhance the fitness of the host.↵↵Given that Candidatus Hamiltonella defensa 5AT is primarily found in host-associated habitats, its ecological role likely extends to microbial interactions within the host environment. This may include the modulation of host responses to various stressors or pathogens, contributing to the overall health and survival of the host. The study of such symbiotic relationships continues to reveal the complexities of microbial life and its impact on host biology, underscoring the importance of understanding these associations in the broader context of ecology and evolution." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens Negative Rod Mesophilic HostAssociated Symbiotic 572265 NC_012751.1 Bac0003581 Halanaerobium praevalens DSM 2228 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium praevalens anaerobic 572479 NC_017455.1 Bac0003582 Ilyobacter polytropus DSM 2926 "Ilyobacter polytropus (strain DSM 2926 / CuHBu1) is a strictly anaerobic, chemoorganotroph, non spore-forming Gram-negative bacterium isolated from marine anoxic mud in Cuxhaven, Germany. The cells are generally rod-shaped (0.7-1.5-3.0 um) with rounded ends and show irregularly elongated rods, when grown on glucose and fructose containing media. They are usually arranged in pairs or chains. The organism is nonmotile and no flagellar genes have been found in the genome. I.polytropus also grows in salt water medium or brackish water medium containing 1% NaCl and 0.15% MgCl2.6H2O. Phosphate (up to 50 mM) does not inhibit growth of I. polytropus, when grown on 3-hydroxybutyrate. The temperature range for growth is between 10 and 35 degrees Celsius, with an optimum at 30 degrees Celsius. The organism does not grow at 4 or at 40 degrees Celsius . The pH range for growth is between 6.5-8.5, with an optimum at pH 7.0-7.5. I. polytropus shows acetate kinase, phosphate acetyl transferase and hydrogenase activities, which are sufficient for involvement in dissimilatory metabolism. I. polytropus maintains its energy metabolism exclusively by substrate-linked phosphorylation reactions. It differs from other anaerobes because it exhibits broad versatility in its use of various fermentation pathways. It is able to ferment 3-hydroxybutyrate and crotonate to acetate and butyrate, glycerol to 1,3-propanediol and 3-hydroxypropionate, malate and fumarate to acetate, formate and propionate, and glucose and fructose to acetate, formate and ethanol. It is also able to ferment a variety of sugars and organic acids. However, pathway regulation is reported as enigmatic because neither propionate nor butyrate are formed during glucose or fructose fermentation, although the necessary enzymes are present. I. polytropus is of ecological interest because the organism does not degrade poly-hydroxybutyrate but only the monomeric form of 3-hydroxybutyrate. Metabolism of the polymer appears to be confined to aerobic microbial communities. (Adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.1273360). (EBI Integr8)" Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter polytropus DSM 2926 Negative Rod No 1 2 Anaerobic 32 Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating No 572544 NC_014632.1 Bac0003583 Archaeoglobus profundus DSM 5631 "Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) is a hyperthermophilic archaeon isolated from a deep sea hydrothermal vent in the Guaymas Basin in the Gulf of California. It grows organoheterotrophically using a variety of carbon and energy sources, but can also grow lithoautotrophically on hydrogen, thiosulphate and carbon dioxide. A. profundus is a chemolithoautotrophic or chemoorganotrophic microorganism using sulfate, sulfite or thiosulfate as electron receptor, with the formation of hydrogen sulfide as the end product. A. profundus thrives at 85 degrees Celsius the optimal temperature for growth. (HAMAP: ARCPA)" Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus profundus DSM 5631 Cocci Yes 1 1 Anaerobic Chemolithoautotroph Hyperthermophilic Specialized Free living Pairs - Singles Nonsporulating No 572546 NC_013742.1 Bac0003584 Aminobacterium colombiense DSM 12261 "Aminobacterium colombiense (strain DSM 12261 / ALA-1) is a strictly anaerobic, amino acid-fermenting, Gram-negative bacterium isolated from an anaerobic lagoon of a dairy wastewater treatment plant. This organism can grow on serine, threonine, glycine and pyruvate. Alanine, glutamate, valine, isoleucine, leucine, methionine, aspartate and malate are oxidized only in the presence of the hydrogenotroph, M. formicicum (H2 scavenger). In addition, the utilization of cysteine, threonine and alpha-ketoglutarate are also improved in the presence of M. formicicum. An 80% hydrogen atmosphere inhibits growth on threonine and alpha-ketoglutarate, whereas glycine degradation is not affected. Serine and pyruvate are partially affected by the presence of hydrogen. The fermentation of serine to acetate occurs via the conversion of serine to pyruvate and ammonia with a serine dehydratase. The optimal growth temperature is 37 degrees Celsius and the temperature range for growth is between 20 and 42 degrees Celsius, with no growth occurring at 18 and 45 degrees Celsius. It does not require NaCl for growth but tolerates less than 1.5% NaCl. Optimum growth occurs in the presence of 0.05 to 0.5%NaCl. The pH range for growth is 6.6 to 8.5 with an optimum pH around 7.3. (Adapted from PMID: 16887649). (EBI Integr8)" Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminobacterium Aminobacterium colombiense DSM 12261 Negative Bacilli No 1 2 Anaerobic 37 Mesophilic Aquatic Free living Pairs- Singles Nonsporulating No 572547 NC_014011.1 Bac0003585 Peptoniphilus asaccharolyticus DSM 20463 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus asaccharolyticus anaerobic 573058 FWWR00000000.1 Bac0003586 Nitratidesulfovibrio vulgaris RCH1 "Nitratidesulfovibrio vulgaris RCH1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is categorized as an anaerobe, indicating that it thrives in environments devoid of oxygen. The optimal growth temperature for N. vulgaris RCH1 is approximately 25.0 °C, suggesting its preference for moderate temperatures typically found in various habitats.↵↵The habitat of N. vulgaris RCH1 remains diverse, indicating its adaptability to different environments. While the specific ecological roles of this microbe are not detailed, its anaerobic nature implies a potential involvement in biogeochemical processes, such as sulfate reduction or nitrogen cycling, which are significant in various ecosystems, including sediments and anaerobic environments.↵↵The ability of N. vulgaris RCH1 to survive and function in multiple habitats may allow it to participate in nutrient cycling, contributing to the maintenance of ecosystem health. This adaptability highlights the importance of understanding microbial diversity in anaerobic environments, as it can have far-reaching implications for nutrient dynamics and ecosystem resilience." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris Negative Rod Yes 1 2 Anaerobe 25 Mesophilic Multiple Free living Singles 573059 NC_017310.1 Bac0003587 Acidovorax delafieldii 2AN Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax delafieldii 573060 ACQT00000000.1 Bac0003588 Methanocaldococcus fervens AG86 "Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) is a thermophilic archaeon, originally isolated from a core sample from a deep sea hydrothermal vent in the Guayamas Basin of the Gulf of California. M. fervens is methanogenic and piezophilic. (HAMAP: METFA)" Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus fervens AG86 Negative Cocci Yes 1 1 Anaerobe Lithotroph - Autotroph Hyperthermophilic Specialized Free living Nonsporulating No 573064 NC_013157.1 Bac0003589 Asticcacaulis excentricus CB 48 Asticcacaulis excentricus CB 48. Asticcacaulis excentricus CB 48 will be used for comparative analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis excentricus CB 48 Negative Bacilli No Aerobic Mesophilic Aquatic Free living Nonsporulating 573065 NC_014817.1 Bac0003590 Chitinophaga rupis "Chitinophaga rupis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This organism belongs to the phylum Bacteroidetes and is notable for its ability to thrive in oxygen-rich environments. The Gram-negative nature of C. rupis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may confer specific advantages in its ecological niche.↵↵The rod shape of C. rupis is a common morphology among many bacteria, which can influence its motility and interaction with its environment. As an aerobic microbe, C. rupis relies on oxygen for its metabolic processes, which may play a critical role in its ecological adaptations. This trait suggests that C. rupis may be involved in specific biogeochemical cycles where oxygen availability is a determining factor.↵↵Interestingly, the presence of C. rupis in various environments may indicate its role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in fungal cell walls. This ability to degrade chitin could have significant implications for nutrient cycling in ecosystems, particularly in soil and marine environments where chitinous materials are abundant. Thus, C. rupis may contribute to the decomposition of organic matter and the recycling of nutrients in its habitat, highlighting its ecological significance in maintaining ecosystem health." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga rupis Gram-negative rod non-motile aerobic 573321 FOBB00000000.1 Bac0003591 Sediminispirochaeta smaragdinae DSM 11293 "Sediminispirochaeta smaragdinae DSM 11293 is a nonsporulating, anaerobic bacterium characterized by its spirilla shape and its role as a chemoorganotroph, utilizing organic compounds as an energy source. This microbe thrives in specialized habitats, which likely reflect its adaptation to specific environmental conditions that may not be conducive to other microbial life forms. ↵↵The anaerobic nature of S. smaragdinae suggests a metabolic process that is independent of oxygen, potentially involving fermentation or anaerobic respiration to sustain its energy needs. Its spirilla morphology may confer advantages in motility and colonization within its specialized habitat, allowing for effective navigation through complex environments, such as sediment layers or anaerobic niches.↵↵The ecological implications of S. smaragdinae's lifestyle highlight the importance of anaerobic microorganisms in biogeochemical cycles, particularly in the decomposition of organic matter, which contributes to nutrient cycling in its environment. This positions S. smaragdinae as a potential player in the maintenance of anaerobic ecosystems, emphasizing the critical roles that such specialized microbes hold in sustaining ecological balance and facilitating energy flow within their habitats." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Sediminispirochaeta Sediminispirochaeta smaragdinae Spirilla No 1 2 Anaerobic Chemoorganotroph Mesophilic Specialized Free living Nonsporulating 573413 NC_014364.1 Bac0003592 Parafrankia sp. Ea1.12 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Parafrankia Parafrankia sp. Ea1.12 573499 UBIZ00000000.1 Bac0003593 Leeuwenhoekiella palythoae "Leeuwenhoekiella palythoae is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This microbe thrives at an optimal growth temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a member of the microbial community, L. palythoae’s aerobic nature suggests that it plays a role in environments where oxygen is readily available, potentially contributing to the degradation of organic matter or participating in nutrient cycling.↵↵The rod shape of L. palythoae may facilitate its movement and colonization within its ecological niche, allowing it to adapt to various microenvironments. The Gram-negative cell wall structure is indicative of its cellular composition, which may influence its interactions with other microorganisms and its resilience to certain environmental stresses.↵↵While specific ecological roles and interactions are not detailed, L. palythoae's characteristics may point towards a function within aquatic or soil ecosystems where oxygen is present. This bacterium could be involved in processes such as the decomposition of organic materials or the cycling of nutrients, contributing to the overall health and balance of its habitat. Understanding the ecological implications of L. palythoae's traits could provide insights into the dynamics of microbial communities in similar environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella palythoae Gram-negative rod motile aerobic 25 mesophilic 573501 FQXT00000000.1 Bac0003594 Francisella uliginis str. TX07-7310 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella uliginis 573570 NZ_CP016796.1 Bac0003595 Candidatus Planktophila limnetica Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae Candidatus Planktophila Candidatus Planktophila limnetica 573600 NZ_CP016782.1 Bac0003596 Pandoraea oxalativorans str. DSM-23570 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea oxalativorans 573737 NZ_CP011521.2 Bac0003597 Acetohalobium arabaticum DSM 5501 "Acetohalobium arabaticum (strainA TCC 49924 / DSM 5501 / Z-7288) is an obligate halophile, acetogenic, Gram-positive bacterium isolated from lagoons of the Arabat spit (East Crimea) which separates Sivash lake from the Sea of Azov. It produces acetate by reducing CO2. Growth is completely inhibited by 100 uM/ml streptomycin, benzylpenicillin, bacitracin, erythromycin, gentamycin, kanamycin, vancomycin or tetracyclin. It is an obligately anaerobe tolerating up to 12 mM H2S. Neither O2, S2O3 SO4, nor S0 can serve as electron acceptors. A. arabaticum requires a salt concentration of 10-25% NaCl and the optimum is 15-18% NaCl. The optimal pH is between 7.6 and 8.0. A. arabaticum exhibits three modes of nutrition: It is chemolithoautotrophic using H2 together with CO2 or CO; it is methylotrophic using trimethylamine (TMA); and it is organotrophic using betaine, lactate, pyruvate or histidine. (Adapted from: PMID 21304692). (EBI Integr8)" Bacillati Bacillota Clostridia Halanaerobiales Halobacteroidaceae Acetohalobium Acetohalobium arabaticum DSM 5501 Positive Bacilli Yes 1 1 Anaerobic Chemolithotroph- Methylotroph- Organotroph Mesophilic Specialized Free living Nonsporulating No 574087 NC_014378.1 Bac0003598 Aidingimonas halophila "Aidingimonas halophila is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolism. This microbe does not form spores, which may influence its survival and adaptability in various environments. Aidingimonas halophila thrives optimally at a temperature of 37.0°C, a trait that suggests a potential preference for warm environments, possibly reflecting its ecological niche. ↵↵The facultative nature of Aidingimonas halophila's oxygen requirement indicates that it can utilize oxygen when available but can also survive in anaerobic conditions, allowing it to inhabit diverse environments. This adaptability may contribute to its resilience in fluctuating oxygen levels, which are common in various natural and engineered ecosystems.↵↵Notably, the combination of its Gram-negative structure and metabolic versatility may allow Aidingimonas halophila to play a significant role in biogeochemical cycles, particularly in saline or hypersaline environments, where it may engage in nutrient cycling and organic matter decomposition. The insights into its metabolic capabilities suggest potential applications in biotechnology, particularly in processes involving organic waste treatment or bioremediation in saline conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Aidingimonas Aidingimonas halophila Gram-negative rod facultative aerobe/anaerobe 37 mesophilic non-spore-forming 574349 FNNI00000000.1 Bac0003599 Bacillus gaemokensis str. JCM 15801 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus gaemokensis 574375 JOTM00000000.1 Bac0003600 Bacillus manliponensis str. JCM 15802 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus manliponensis 574376 JOTN00000000.1 Bac0003601 Escherichia coli O127:H6 str. E2348/69 "Escherichia coli O127:H6 str. E2348/69 is a gram-negative, rod-shaped bacterium, classified as a facultative anaerobe and a chemoheterotroph, thriving optimally between 25°C and 37°C. This specific strain of E. coli is part of the diverse microbiota found in the gastrointestinal tracts of humans and animals, where it plays a crucial role in digestion and nutrient absorption.As a gram-negative organism, E. coli O127:H6 possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contributes to its pathogenicity and ability to evade host immune responses. Its rod shape allows for efficient mobility and colonization of various environments, particularly the intestines. As a facultative anaerobe, E. coli can survive and grow in both aerobic and anaerobic conditions, making it versatile in different environments, from the oxygen-rich intestines to anaerobic areas in the gut. Being a chemoheterotroph, E. coli relies on organic compounds for both carbon and energy, metabolizing simple sugars and amino acids to sustain its growth. This metabolic strategy allows it to flourish in the nutrient-rich environments of the gastrointestinal tract, where it contributes to the breakdown of food and synthesis of vitamins. E. coli O127:H6 str. E2348/69 is notable for its pathogenic potential, particularly in the context of foodborne illnesses. It has been associated with outbreaks of diarrhea and more severe conditions like hemolytic uremic syndrome. This strain's virulence factors, such as adhesins and toxins, facilitate its adherence to and colonization of intestinal epithelial cells, underscoring the importance of understanding its behavior in both health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli E2348/69 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 574521 NC_011602.1 Bac0003602 Anaplasma centrale str. Israel "Anaplasma marginale is the most prevalent tick-borne pathogen of cattle. It is transmitted by ixodid ticks. Symptoms of acute disease are anemia, weight loss, and often death. A.marginale establishes life-long persistent infection in animals that survive disease. These animals are clinically healthy but serve as reservoirs for transmission of the pathogen. Anaplasma marginale subsp. centrale (Anaplasma centrale (strain Israel)) is a naturally occurring attenuated strain has been used as a live vaccine to prevent severe disease due to A. marginale senso stricto strains for 100 years. A. marginale subsp. centrale contains 10 putative genes not found in the genomes of senso stricto strains, while 18 genes found in senso stricto strains are absent from A. marginale subsp. centrale. As inoculation with purified outer membrane protein (OMP) complexes provides immunity against A. marginale, it is important to identify OMPs that differ among A,marginale to identify further vaccine candidates. Comparative analysis reduces the number of candidate proteins to six: four Msp2 superfamily members (Msp4, Omp1, Omp7, and OpAG2) and two non-superfamily members (AM779/ACIS557 and AM854/ACIS486) (adapted from PMID 19854912). (HAMAP: ANACI)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma centrale Israel Negative Cocci No 1 2 Aerobic Mesophilic HostAssociated Singles No 574556 NC_013532.1 Bac0003603 Rhizobium pisi Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium pisi 574561 SJNR00000000.1 Bac0003604 Nocardioides terrae "Nocardioides terrae is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This organism is part of the genus Nocardioides, which is known for its diverse metabolic capabilities and potential applications in bioremediation due to its ability to degrade various organic compounds. ↵↵As a Gram-positive microbe, N. terrae possesses a thick peptidoglycan layer in its cell wall, which is characteristic of this group and contributes to its structural integrity. The bacterium's rod-shaped morphology is typical of many members within its genus, enabling it to adapt to various environments, particularly those rich in organic matter where oxygen is readily available.↵↵Understanding the physiological characteristics of N. terrae can provide insights into its ecological role in soil environments, where it likely participates in nutrient cycling and may contribute to the degradation of complex organic materials. The optimal growth temperature suggests that N. terrae is well-suited for temperate climates, potentially influencing soil health and ecosystem dynamics in such regions. Further investigations into its metabolic pathways may reveal additional ecological roles and applications in environmental biotechnology." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides terrae Gram-positive rod non-motile aerobic 29 mesophilic 574651 FOLB00000000.1 Bac0003605 Nocardioides caeni str. DSM 23134 "Nocardioides caeni strain DSM 23134 is a Gram-positive, aerobic bacterium characterized by its rod-shaped morphology and non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. As a member of the Nocardioides genus, it may play a role in various ecological processes, particularly in the degradation of organic materials in soil or aquatic environments. ↵↵The Gram-positive nature of N. caeni suggests a robust cell wall structure composed primarily of peptidoglycan, which may confer certain advantages in its ecological niche, such as resilience to environmental stressors. Although specific ecological interactions of this strain are not detailed, its aerobic metabolism implies that it requires oxygen for growth and may contribute to biogeochemical cycles, particularly in aerobic environments where organic matter decomposition occurs.↵↵Understanding the traits of Nocardioides caeni provides insights into its potential role in microbial communities, specifically in relation to organic matter turnover and nutrient cycling. These characteristics underscore the importance of such bacteria in maintaining ecosystem health and functionality, as they may facilitate the breakdown of complex organic compounds in diverse habitats." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides caeni Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 574700 STGW00000000.1 Bac0003606 Thermolongibacillus altinsuensis str. DSM 24979 "Thermolongibacillus altinsuensis strain DSM 24979 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolic requirements. This organism thrives optimally at a temperature of 45.0°C, indicating its adaptation to thermophilic environments where elevated temperatures prevail. ↵↵The Gram-positive nature of T. altinsuensis suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in extreme conditions. The spore-forming capability is particularly notable, as it allows the bacterium to survive harsh environmental challenges, including desiccation and nutrient depletion. Such features are common among thermophilic microorganisms, facilitating their persistence in high-temperature habitats such as hot springs or geothermal systems.↵↵The aerobic requirement of T. altinsuensis implies that it relies on oxygen for its metabolic processes, which could influence its ecological role in its natural habitat. This microbe may play a significant part in the biogeochemical cycling of elements in high-temperature environments, potentially impacting the availability of nutrients and the dynamics of microbial communities. Its unique combination of traits positions T. altinsuensis as a valuable organism for studies related to thermophily and microbial ecology in extreme environments." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Thermolongibacillus Thermolongibacillus altinsuensis Gram-positive rod aerobic 45 thermophilic spore-forming 575256 SLUL00000000.1 Bac0003607 Isosphaera pallida ATCC 43644 "Isosphaera pallida strain IS1B was isolated from a hot spring in Kah-nee-tah, Oregon, USA. It is the only budding bacterium known to glide and the only heterotrophic bacterium known to be phototactic. Cells are spherical (2.5 to 3 um) in diameter, with cell growth and division occurring by intercalary budding, resulting in filaments. The cells are salmon-colored (caused by carotenoids) and contain gas vesicles. The cells contain numerous pili but no flagella. Under some conditions cells form motile, macroscopic aggregates,or ""comets"". Aggregation and motility were observed in both the light and the dark, however comets were strongly phototactic. I. pallida has an unusual cell wall ultrastructure and is resistant to beta-lactam antibiotics, suggesting that it does not have a peptidoglycan cell wall, and indeed cells stain Gram-negative but lack an outer membrane (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1533840/sigs.1533840_pdf and PMID 3584067). (EBI Integr8)" Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Isosphaera Isosphaera pallida ATCC 43644 Negative Cocci Yes 1 2 Aerobic Thermophilic Specialized Free living Nonsporulating No 575540 NC_014957.1 Bac0003608 Bacteroidetes oral taxon 274 str. F0058 Pseudomonadati Bacteroidota Bacteroidetes oral taxon 274 575590 ADCM00000000.1 Bac0003609 Limosilactobacillus coleohominis 101-4-CHN "Limosilactobacillus coleohominis 101-4-CHN is a Gram-positive, rod-shaped bacterium classified as a facultative anaerobe. This strain demonstrates the ability to thrive in both aerobic and anaerobic conditions, allowing it to adapt to varying environmental niches. The Gram-positive nature of this microbe indicates a thick peptidoglycan layer in its cell wall, which is characteristic of many lactic acid bacteria, potentially contributing to its robustness in diverse ecological contexts.↵↵Limosilactobacillus species are commonly associated with fermentation processes and are often found in various environments, including the gastrointestinal tracts of humans and animals, as well as in fermented foods. The facultative anaerobic capability of L. coleohominis 101-4-CHN suggests that it may play a role in both aerobic and anaerobic fermentation pathways, which may enhance its utility in food production and probiotic applications.↵↵Understanding the metabolic versatility of Limosilactobacillus coleohominis 101-4-CHN could provide insights into its potential roles in promoting gut health and its contribution to the fermentation of various substrates. Additionally, its adaptation to fluctuating oxygen levels may serve as an advantage in complex microbial communities, where competition for resources and environmental conditions can vary significantly. This adaptability underscores the importance of studying this strain in the context of microbial ecology and its potential applications in biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus coleohominis Positive Rod Facultative anaerobe 575594 ACOH00000000.1 Bac0003610 Peptoniphilus sp. oral taxon 386 str. F0131 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus sp. oral taxon 386 575609 ADCS00000000.1 Bac0003611 Prevotella sp. oral taxon 299 str. F0039 "Prevotella sp. oral taxon 299 str. F0039 is a Gram-negative, rod-shaped microbe that thrives in temperatures between 20°C and 40°C, falling under the category of mesophiles. This microbe is a heterotroph, meaning it obtains its energy and nutrients by breaking down complex organic compounds rather than producing its own food. Specifically, it is a chemoheterotroph, relying on the oxidation of organic molecules as its primary energy source. As a chemoheterotroph, Prevotella sp. oral taxon 299 str. F0039 produces energy through cellular respiration, a process that involves the breakdown of glucose and other organic compounds to generate ATP. The Gram stain characteristics of this microbe reveal its cell wall composition, which is typically associated with Gram-negative bacteria. In terms of its shape, Prevotella sp. oral taxon 299 str. F0039 is characterized as a rod or a fusiform shape, with dimensions ranging from 0.5 to 3.0 μm in length. This microbe has been found to inhabit a range of body sites, including the oral cavity, gastrointestinal tract, and female genital tract. In terms of its oxygen preference, Prevotella sp. oral taxon 299 str. F0039 is an obligate anaerobe, meaning it is unable to survive in the presence of oxygen. As such, it is typically found in environments with low oxygen levels or is adapted to live in areas where oxygen is limited. What sets Prevotella sp. oral taxon 299 str. F0039 apart from other microorganisms is its unique role in the human oral microbiome. It has been found to play a key role in the breakdown of carbohydrates, particularly in the digestion of dietary fiber, and has been linked to various oral diseases, including periodontitis and dental caries. Further research into the metabolism and interactions of this microbe could provide valuable insights into the complex relationships between humans and their microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 299 No 1 Anaerobic Chemoheterotroph Host gut Nonsporulating 575614 NC_022111.1 Bac0003612 Vibrio atlanticus LGP32 "Vibrio atlanticus LGP32 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells in aquatic environments. As a heterotroph, this species utilizes organic compounds as its energy source, allowing it to thrive in diverse aquatic habitats where organic matter is available. Its facultative anaerobic nature indicates that V. atlanticus LGP32 is capable of surviving in both aerobic and anaerobic conditions, adapting to varying oxygen levels in its environment.↵↵This adaptability not only underscores the organism's ecological versatility but may also enhance its resilience in fluctuating aquatic systems. Furthermore, the presence of this bacterium in marine ecosystems may suggest its role in the degradation of organic materials, contributing to nutrient cycling and overall ecosystem health. Understanding the traits of V. atlanticus LGP32 provides insights into its potential ecological functions and interactions within marine microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio atlanticus Negative Rod No 1 2 Facultative Heterotroph Mesophilic Aquatic Free living Singles 575788 NC_011753.2 Bac0003613 Pseudidiomarina insulisalsae str. CVS-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina insulisalsae 575789 PIPY00000000.1 Bac0003614 Celeribacter halophilus "Celeribacter halophilus is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics, thriving optimally at a temperature of 29.0°C. This organism's Gram-negative cell wall structure is indicative of its physiological adaptations, which likely contribute to its survival in specific environments. As an aerobic microbe, C. halophilus requires oxygen for its growth and metabolic processes, underscoring its ecological niche in oxygen-rich habitats. ↵↵The optimal growth temperature of 29.0°C suggests a preference for moderate thermal conditions, which might be reflective of its natural habitat, potentially in marine or saline environments where such temperatures are prevalent. The unique combination of traits exhibited by C. halophilus positions it as a potentially important player in its ecosystem, particularly in processes related to organic matter decomposition or nutrient cycling in aquatic systems.↵↵Furthermore, the adaptation to aerobic conditions may enable C. halophilus to compete effectively with other microorganisms in its habitat, facilitating a dynamic interplay within microbial communities. This bacterium could serve as a model organism for studying microbial adaptations to specific environmental conditions, particularly in high-salinity or temperate regions, where its metabolic capabilities may provide insights into the ecological roles of halophilic bacteria." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter halophilus Gram-negative rod non-motile aerobic 29 mesophilic 576117 FORY00000000.1 Bac0003615 Lacicoccus qingdaonensis Bacillati Bacillota Bacilli Caryophanales Salinicoccaceae Lacicoccus Lacicoccus qingdaonensis 576118 FNFY00000000.1 Bac0003616 Lentibacter algarum "Lentibacter algarum is an ovoid, aerobic bacterium that does not form spores. This microbe is characterized by its distinct morphology and metabolic requirements, thriving in environments where oxygen is readily available. The ovoid shape may suggest adaptations for efficiency in nutrient uptake and gas exchange, which are critical in aerobic conditions.↵↵Lentibacter algarum is notable for its non-spore-forming nature, which indicates a reliance on favorable environmental conditions for survival and replication. This trait may limit its resilience to extreme conditions typically faced by spore-forming bacteria, thus influencing its ecological niche and habitat preferences.↵↵The aerobic respiration utilized by Lentibacter algarum suggests that it may play a significant role in the carbon cycle within its habitat, likely contributing to the degradation of organic matter. Its metabolic processes could facilitate the transformation of organic substrates in oxygen-rich environments, highlighting its potential importance in nutrient cycling and ecosystem functioning.↵↵Overall, the unique combination of its ovoid morphology and aerobic lifestyle positions Lentibacter algarum as a specialized organism that may be particularly well-suited to environments rich in organic materials and dissolved oxygen, potentially influencing the microbial community structure in such habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Lentibacter Lentibacter algarum ovoid non-motile aerobic non-spore-forming 576131 FNPR00000000.1 Bac0003617 Polynucleobacter asymbioticus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter asymbioticus 576611 NZ_CP015016.1 Bac0003618 Desulfobulbus propionicus DSM 2032 Desulfobulbus propionicus DSM 2032. Desulfobulbus propionicus DSM 2032 is the type strain and will be used for comparative analysis with other sulfate-reducing bacteria. (NCBI BioProject: bp_list[1]) Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus propionicus DSM 2032 Negative Bacilli No Anaerobic Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating 577650 NC_014972.1 Bac0003619 Dongia mobilis str. CGMCC 1.7660 "Dongia mobilis str. CGMCC 1.7660 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This strain is characterized by its non-spore-forming nature, which indicates a reliance on vegetative growth under suitable environmental conditions. Optimal growth of Dongia mobilis is observed at a temperature of 32.0°C, suggesting a preference for moderate thermal environments.↵↵As a member of the microbial community, Dongia mobilis str. CGMCC 1.7660 may play a significant role in nutrient cycling and organic matter decomposition within its ecological niche. Its aerobic nature implies that it likely participates in processes that require oxygen, potentially influencing the dynamics of microbial communities in oxygen-rich habitats. Further research into its metabolic capabilities could reveal insights into its functional contributions to the ecosystem, particularly in relation to organic matter turnover and nutrient availability." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Dongiaceae Dongia Dongia mobilis Gram-negative rod aerobic 32 mesophilic non-spore-forming 578943 SNYW00000000.1 Bac0003620 Vibrio cholerae M66-2 "Vibrio species represent a significant portion of the culturable heterotrophic bacteria of oceans, coastal waters and estuaries. Various species of this genus are devastating pathogens for finfish, shellfish and mammals. A Gram-negative, rod-shaped bacterium, V.cholerae is the etiological agent of cholera, a severe diarrheal disease that occurs most frequently in epidemic form. Cholera has been epidemic in southern Asia for at least 1000 years; epidemics are usually associated with poor sanitary conditions. Vibrio cholerae as a species includes both pathogenic and non pathogenic strains that vary in their virulence and gene content. There are 2 major serogroups that cause epidemic cholera, O1 and O139. Serogroup O1 is further classified into two biotypes, classical and El Tor, and into two major serotypes, Inaba and Ogawa.Cholera outbreaks are unique in that the date and place of the occurrence, and in some cases the causative strain, are known. The first 6 pandemics (1817 to 1923) were caused by classical strains, however the 7th, which erupted in 1961, was caused by the hitherto mild El Tor strain. Strain M66-2 is a 1937 Makassar outbreak isolate, which appears to be on the direct line to the 7th pandemic. Comparison of the 6th pandemic O395 strain with M66-2 and the 7th pandemic strain (El Tor Inaba N16961) shows that the 2 pandemic clones gained pandemic potential independently, and overall there were 29 insertions or deletions of one or more genes. The divergence date of the 6th and 7th pandemic clones is estimated to be about 1880 (adapted from 19115014). (HAMAP: VIBCM)" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae M66-2 Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 579112 NC_012578.1 Bac0003621 Methanocaldococcus vulcanius M7 "Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) is an anaerobic, autotrophic, hyperthermophilic methanogen archaeon isolated from a deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600 m. The temperature range for growth at pH 6.5 is 49-89 degrees Celsius, with optimum growth at 80 degrees Celsius. The optimum pH for growth is 6.5, and the optimum NaCl concentration for growth is around 25 g/l. It uses H2 and CO2 as the only substrates for growth and methane production. Tungsten, selenium and yeast extract stimulate growth significantly. In the presence of CO2 and H2, the organism reduces elemental sulphur to hydrogen sulphide. Growth is inhibited by chloramphenicol and rifampicin, but not by ampicillin, kanamycin, penicillin and streptomycin. As determined by 16S rDNA gene sequence analysis, this organism is closely related to Methanococcus jannaschii (strain JAL-1T). However, despite the high percentage of similarity between their 16S rDNA sequences (97.1%), the DNA-DNA hybridization levels between these strains are less than 5%. On the basis of these observations and physiological traits, it is proposed that this organism should be placed in a new species, Methanococcus vulcanius. (Adaptated from PMID: 10319479). (HAMAP: METVM)" Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus vulcanius M7 Negative Cocci No 1 1 Anaerobic 80 Autotroph Hyperthermophilic Specialized Free living Nonsporulating No 579137 NC_013409.1 Bac0003622 Zymomonas mobilis subsp. pomaceae ATCC 29192 "Zymomonas mobilis subsp. mobilis (strain NCIB 11163) is a facultative aerobic, ethanol-producing bacterium. The natural habitat of this organism includes sugar-rich plant saps where the bacterium ferments sugar such as glucose or sucrose into ethanol and carbon dioxide. It is useful in industrial production systems, particularly in production of bioethanol for fuel. Genetically engineered strains that ferment pentoses in addition to naturally utilized hexoses also hold great promise for use in lignocellulosic biomass degradations. Z. mobilis is utilized for the conversion of sugars, particularly xylose, which is not utilized by another common sugar-fermenting organism such as yeast, to ethanol. Since xylose is a common breakdown product of cellulose or a waste component of the agricultural industry, it is an attractive source for ethanol production. Z. mobilis was chosen for this process as it is ethanol-tolerant (up to 120 grams of ethanol per litre) and productive (5-10% more ethanol than Saccharomyces). This bacterium ferments using the Enter-Doudoroff pathway, with the result that less carbon is used in cellular biomass production and more ends up as ethanol, another factor that favors this organism for ethanol production. Besides ethanol, Z. mobilis can produce other high-value chemicals such as sorbitol, levan, or phenylacetylcarbinol and has attracted interest for its unusual membrane steroid content. Lastly, Z. mobilis is regarded as a safe organism and is even used for medicinal purposes, which further facilitates its employment in large-scale biotechnological endeavors. (Adaptated from PMID: 19767433). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Zymomonadaceae Zymomonas Zymomonas mobilis ATCC 29192 Negative Rod Yes 1 2 Facultative Mesophilic Free living Pairs No 579138 NC_015709.1 Bac0003623 Halomonas sp. S2151 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. S2151 579478 JXYB00000000.1 Bac0003624 Loktanella sp. S4079 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Loktanella Loktanella sp. S4079 579483 JXYE00000000.1 Bac0003625 Pseudoalteromonas sp. S1610 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S1610 579506 PNDI00000000.1 Bac0003626 Pseudoalteromonas sp. S2721 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S2721 579526 PNCZ00000000.1 Bac0003627 Pseudoalteromonas sp. S3776 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S3776 579544 PNCU00000000.1 Bac0003628 Pseudoalteromonas sp. S3785 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S3785 579545 PNCT00000000.1 Bac0003629 Pseudoalteromonas sp. S4491 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S4491 579559 PNCQ00000000.1 Bac0003630 Pseudoalteromonas galatheae Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas galatheae 579562 PNCO00000000.2 Bac0003631 Vibrio galatheae "Vibrio galatheae is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic characteristics, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This microbe is optimally adapted to temperatures around 29.0°C, indicating a possible preference for mesophilic conditions commonly found in marine environments.↵↵As a member of the Vibrio genus, V. galatheae shares traits with other vibrios, notably its ability to adapt to varying oxygen levels, which may enhance its survival in diverse habitats, including those with fluctuating environmental conditions. The facultative lifestyle may also suggest a metabolic versatility that could allow it to exploit a range of organic substrates.↵↵While specific ecological roles and interactions of V. galatheae remain to be fully elucidated, its presence in marine ecosystems could indicate its involvement in nutrient cycling or symbiotic relationships within those environments. This adaptability, particularly at an optimal temperature reflective of tropical to subtropical waters, positions V. galatheae as a potentially important player in the microbial dynamics of its habitat. Further exploration of its ecological interactions and potential applications could yield valuable insights into the functionality of microbial communities in marine settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio galatheae Gram-negative rod motile facultative aerobe/anaerobe 29 mesophilic 579748 JXXV00000000.1 Bac0003632 Oceanibaculum pacificum str. MCCC 1A02656 "Oceanibaculum pacificum strain MCCC 1A02656 is a Gram-negative, rod-shaped bacterium that demonstrates optimal growth at a temperature of 32.0°C. This strain has been classified within the genus Oceanibaculum, which typically encompasses marine microorganisms adapted to various oceanic environments.↵↵As a Gram-negative organism, Oceanibaculum pacificum possesses a characteristic outer membrane containing lipopolysaccharides, which can influence its interactions with the surrounding environment, including its susceptibility to antibiotics and its role in biofilm formation. The rod shape of this bacterium may contribute to its motility and ability to colonize diverse niches within marine habitats.↵↵The optimal growth temperature of 32.0°C suggests that Oceanibaculum pacificum is well-suited to thrive in moderately warm aquatic environments, potentially within coastal regions or estuarine systems where water temperatures often stabilize around this range. This temperature preference indicates a possible adaptation to specific ecological conditions that may foster its growth and metabolic activities.↵↵In summary, Oceanibaculum pacificum str. MCCC 1A02656 exemplifies a marine bacterium adapted to a moderate thermal environment, potentially playing a role in nutrient cycling or microbial diversity within its ecological niche. Its Gram-negative nature and rod-shaped morphology may further facilitate its adaptation and functional roles in marine ecosystems, highlighting the importance of such microorganisms in maintaining oceanic health and stability." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Oceanibaculaceae Oceanibaculum Oceanibaculum pacificum Gram-negative rod 32 mesophilic 580166 LPXN00000000.1 Bac0003633 Sideroxydans lithotrophicus ES-1 Sideroxydans lithotrophicus (strain ES-1) is an autotrophic iron-oxidizing Gram-negative bacterium isolated from iron contaminated groundwater in Michigan. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37127). (EBI Integr8) Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellaceae Sideroxydans Sideroxydans lithotrophicus ES-1 Negative Yes 1 2 Aerobic Chemolithoautotroph Mesophilic Aquatic Free living No 580332 NC_013959.1 Bac0003634 Thermococcus paralvinellae str. ES1 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus paralvinellae 582419 NZ_CP006965.1 Bac0003635 Lysinibacillus xylanilyticus str. t26 "Lysinibacillus xylanilyticus strain T26 is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, allowing it to survive in a variety of environmental conditions. This species thrives optimally at a temperature of 29.0°C and is classified as aerobic, indicating that it requires oxygen for growth and metabolism. ↵↵The spore-forming capability of L. xylanilyticus str. T26 is particularly significant, as it contributes to the microbe's resilience and potential utility in various biotechnological applications. The ability to withstand adverse conditions through sporulation may also suggest a role in nutrient cycling within its ecological niche, where it could contribute to the decomposition of organic matter. ↵↵Overall, the traits of Lysinibacillus xylanilyticus str. T26 position it as a notable organism for further investigation, particularly in the context of its enzymatic activities, which may include the degradation of complex carbohydrates, potentially impacting soil health and plant growth." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus xylanilyticus Gram-positive rod aerobic 29 mesophilic spore-forming 582475 PHQY00000000.1 Bac0003636 Rubidibacter lacunae KORDI 51-2 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Rubidibacter Rubidibacter lacunae 582515 ASSJ00000000.1 Bac0003637 Kinneretia asaccharophila str. DSM 25082 "Kinneretia asaccharophila str. DSM 25082 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and exhibits optimal growth at a temperature of 29.0 °C. This microbe’s Gram-negative classification indicates a distinctive cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane, which can impact its interactions with other organisms and its susceptibility to certain antibiotics.↵↵As an aerobic organism, Kinneretia asaccharophila relies on oxygen for its metabolic processes, which may play a role in its ecological niche, potentially allowing it to inhabit environments where oxygen is readily available. The preference for a specific growth temperature suggests that this strain may be adapted to certain environmental conditions, likely found in temperate regions or specific ecological niches that provide a stable thermal environment.↵↵Kinneretia asaccharophila's metabolic capabilities and growth preferences highlight its potential role in biogeochemical cycles, particularly in aerobic environments where organic matter is decomposed. Its known traits suggest that it may contribute to the breakdown of organic materials, influencing nutrient cycling and ecosystem dynamics. Further studies could elucidate its specific ecological functions and interactions within its habitat, providing insights into its significance in microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles asaccharophilus Gram-negative rod aerobic 29 mesophilic 582607 SNXE00000000.1 Bac0003638 Methylobacterium pseudosasicola Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium pseudosasicola 582667 FOTK00000000.1 Bac0003639 Methylobacterium gossipiicola "Methylobacterium gossipiicola is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and reproduction. ↵↵As a member of the Methylobacterium genus, M. gossipiicola is likely involved in the metabolism of one-carbon compounds, such as methanol, which is a trait common among its relatives. This metabolic capability may allow it to play a role in carbon cycling in its natural habitats. Furthermore, the organism's adaptation to aerobic conditions indicates a potential involvement in processes that require oxygen, possibly contributing to the degradation of organic matter in its environment.↵↵The specific ecological niche of M. gossipiicola remains to be fully elucidated; however, its optimal growth temperature suggests a preference for moderately warm habitats, which may include soil or plant-associated environments. The ability of this microbe to metabolize various substrates may facilitate interactions with plant systems, potentially influencing plant health and growth. Understanding the physiological traits and ecological roles of M. gossipiicola can provide insights into the broader functions of methylotrophic bacteria within microbial communities and their contributions to nutrient cycling in ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium gossipiicola Gram-negative rod aerobic 29 mesophilic non-spore-forming 582675 FOPM00000000.1 Bac0003640 Microbacterium azadirachtae "Microbacterium azadirachtae is a Gram-positive, aerobic, rod-shaped bacterium that has been characterized by its non-spore-forming nature and optimal growth temperature of 29.0°C. This microbe is notable for its resilience in aerobic environments, where it presumably engages in metabolic processes that require oxygen. ↵↵The rod shape of M. azadirachtae suggests a structural adaptation that may facilitate nutrient absorption and motility in its ecological niche. Its Gram-positive nature indicates a thick peptidoglycan layer in the cell wall, which may contribute to its stability and ability to withstand environmental stresses. ↵↵Although specific ecological roles are not detailed in the available data, the growth temperature of 29.0°C suggests that M. azadirachtae may thrive in warm environments, possibly those associated with decaying organic matter or agricultural systems. This temperature preference could also indicate a potential association with tropical or subtropical ecosystems, particularly given its name, which references the neem tree (Azadirachta indica), a plant known for its diverse biological interactions. ↵↵The unique combination of traits exhibited by Microbacterium azadirachtae underscores its potential importance in nutrient cycling and its adaptability to specific environmental conditions, warranting further exploration of its ecological roles and potential applications in biotechnology or agriculture." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium azadirachtae Gram-positive rod aerobic 29 mesophilic non-spore-forming 582680 JYIX00000000.1 Bac0003641 Paenibacillus polysaccharolyticus "Paenibacillus polysaccharolyticus is a Gram-positive, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This species is notable for its ability to degrade polysaccharides, reflecting its potential role in biogeochemical cycling and organic matter decomposition in various environments. ↵↵The Gram-positive nature of P. polysaccharolyticus suggests a thick peptidoglycan layer in its cell wall, which may contribute to its structural integrity and resilience in diverse habitats. Its rod shape is characteristic of many bacterial species, allowing for efficient nutrient uptake and motility in its environment. ↵↵The preference for aerobic conditions indicates that P. polysaccharolyticus relies on oxygen for its metabolic processes, which is essential for its polysaccharide-degrading capabilities. This metabolic strategy may enable the bacterium to occupy niches where organic substrates are plentiful, such as in soil and decaying plant matter.↵↵Given its polysaccharide-degrading abilities, Paenibacillus polysaccharolyticus could play a significant role in the breakdown of complex carbohydrates, potentially aiding in nutrient cycling and soil health. Understanding its metabolic pathways may also offer insights into its application in biotechnological processes, particularly those aimed at biomass conversion and sustainable waste management." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polysaccharolyticus Gram-positive rod aerobic 29 mesophilic 582692 FMVM00000000.1 Bac0003642 Methylovorus glucosetrophus SIP3-4 "This organism is able to utilize methylamines, potentially significant greenhouse gases, as a sole source of energy. This strain will be used for comparative analysis with other methylotrophs. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylovorus Methylovorus glucosotrophus SIP3-4 Negative Rod No Aerobic Methylotroph Mesophilic Aquatic Free living Nonsporulating 582744 NC_012972.1 Bac0003643 Hyphomicrobium denitrificans ATCC 51888 "Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium denitrificans ATCC 51888 Negative Bacilli No 1 2 Aerobic Mesophilic Aquatic Free living Nonsporulating No 582899 NC_014313.1 Bac0003644 Methylotenera mobilis JLW8 "Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) is an aerobic methylotroph (degraders of C1 compounds) Gram-negative bacterium isolated from Lake Washington (USA). This organism is actively involved in utilization of single-carbon (C1) compounds, important constituents of global carbon and nitrogen cycling. It is able to utilize methylamines, potentially significant greenhouse gases, as a sole source of energy. Methylotrophic bacteria play a major role in maintaining the balance of C1 compounds in aerobic (oxygenated) environments. They are ubiquitous and are found across a range of oxygen tension, salinity, pH, and temperature. In addition to their role in natural environmental processes, methylotrophs have potential in bioremediation of environmental pollutants such as chlorinated solvents and methyl tert-butyl ether (MTBE). (Adaptated from PMID: http://genome.jgi-psf.org/metmo/metmo.home.html). (HAMAP: METML)" Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylotenera Methylotenera mobilis JLW8 Negative Rod No 1 2 Aerobic Methylotroph Mesophilic Aquatic Free living Nonsporulating No 583345 NC_012968.1 Bac0003645 Coraliomargarita akajimensis DSM 45221 "Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) is an obligately aerobic, non-spore-forming, non-motile, Gram-negative bacterium isolated from seawater surrounding the hard coral Galaxea fascicularis. The optimum temperature for growth ranges from 20 to 30 degrees Celsius, and no growth is observed at 4 or 45 degrees Celsius. The pH range for growth is 7.0-9.0, and NaCl concentrations up to 5% (w/v) are tolerated. C. akajimensis produces acid from glycerol, galactose, fructose, mannose, mannitol, sorbitol, trehalose, D-turanose, D-lyxose, D-tagatose, D-fucose, L-fucose, D-arabitol, and 5-ketogluconate. C. akajimensis is able to hydrolyze urea and DNA, but cannot hydrolyze agar, casein, aesculin, starch and gelatin. Nitrate is not reduced to nitrite. C. akajimensis is catalase negative, oxidase positive and is resistant to ampicillin and penicillin G. (Adapted from PMID 21304713). (EBI Integr8)" Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Coraliomargaritaceae Coraliomargarita Coraliomargarita akajimensis DSM 45221 Negative Cocci No 1 2 Aerobic 25 Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating No 583355 NC_014008.1 Bac0003646 Thermoanaerobacter mathranii subsp. mathranii str. A3 "Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) is an anaerobic, thermophilic Gram-positive bacterium isolated from hot spring from Hverdagerdi-Hengil area in Iceland. T. mathranii grows at an optimum temperature of 70-75 degrees. (adapted from: http://www.ncbi.nlm.nih.gov/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37149). (HAMAP: THEM3)" Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter mathranii A3 Positive Bacilli Yes 1 1 Anaerobic 70 Thermophilic Specialized Free living Sporulating No 583358 NC_014209.1 Bac0003647 Tenacibaculum jejuense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum jejuense 584609 NZ_LT899436.1 Bac0003648 Aminomonas paucivorans DSM 12260 Thermotogati Synergistota Synergistia Synergistales Synergistaceae Aminomonas Aminomonas paucivorans anaerobic 584708 NZ_CM001022.1 Bac0003649 Gallaecimonas pentaromativorans str. DSM 21945 "Gallaecimonas pentaromativorans strain DSM 21945 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0 °C. This mesophilic microbe is notable for its ability to utilize a range of aromatic compounds, which reflects its potential role in bioremediation processes and the degradation of environmental pollutants. The Gram-negative classification suggests a complex cell wall structure, comprising an inner and outer membrane, which may contribute to its metabolic versatility and resistance to certain environmental stresses.↵↵The strain DSM 21945 has been isolated from marine environments, reinforcing the significance of marine bacteria in the cycling of organic matter and their interactions within aquatic ecosystems. Its rod shape may facilitate efficient nutrient uptake and mobility in diverse habitats, allowing it to thrive in conditions where organic compounds are available.↵↵Given its enzymatic capabilities related to aromatic compound degradation, Gallaecimonas pentaromativorans could play a crucial role in the natural attenuation of pollutants in marine systems. The unique metabolic pathways it possesses may also provide insights into the evolutionary adaptations of marine bacteria to utilize complex organic substrates, highlighting the importance of such microorganisms in maintaining ecological balance in their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Gallaecimonadaceae Gallaecimonas Gallaecimonas pentaromativorans Gram-negative rod 29 mesophilic 584787 RJUL00000000.1 Bac0003650 Escherichia coli S88 "Escherichia coli S88 is a gram-negative, rod-shaped bacterium that thrives in mesophilic conditions, exhibiting a temperature preference typically between 20°C and 45°C. Classified as a chemoheterotroph, E. coli S88 obtains its nutrients from organic compounds, allowing it to grow efficiently in various environments, including the gastrointestinal tracts of warm-blooded animals. As a facultative anaerobe, this microbe can survive both in the presence and absence of oxygen, utilizing aerobic respiration when oxygen is available, and switching to fermentation or anaerobic respiration when it is not. The E. coli S88 strain is predominantly found in the intestines of humans and other mammals, where it plays a crucial role in digestion and maintaining gut health. This strain, like other E. coli varieties, can also inhabit diverse environments beyond the intestine, including soil, water, and animal waste, which contributes to its important role in the ecosystem as a decomposer of organic material. E. coli S88 is often studied for its potential applications in biotechnology and microbial ecology due to its rapid growth rate and genetic manipulability. It is widely used as a model organism in molecular biology, especially in studies involving gene cloning, protein expression, and metabolic pathways, owing to its well-characterized genome. Furthermore, certain pathogenic strains of E. coli are known to cause foodborne illnesses, but E. coli S88 itself is typically non-pathogenic and serves as an essential component of the microbiome. Its versatility and adaptability render it a key player in both environmental and medical microbiology research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli S88 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic Multiple Free living Homo sapiens Pairs - Singles Nonsporulating Yes 585035 NC_011747.1 Bac0003651 Escherichia coli UMN026 "Escherichia coli UMN026 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic conditions, preferring moderate temperature ranges. As a chemoheterotroph, this microbe derives its energy from organic compounds, which it metabolizes in the presence or absence of oxygen, making it a facultative anaerobe. E. coli UMN026 can be found in the intestinal tracts of a variety of hosts, including humans and other animals, where it plays a notable role in digestion and nutrient absorption. The Gram-negative characteristic of E. coli UMN026 is attributed to its cell wall structure, which consists of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structure not only provides structural integrity but also contributes to its pathogenic potential in certain strains. Its rod shape facilitates motility and colonization within the gastrointestinal tract, where it often forms biofilms. As a mesophilic organism, E. coli UMN026 thrives optimally at temperatures around 37°C (98.6°F), which is consistent with the body temperature of its warm-blooded hosts. Its facultative anaerobic nature allows it to adapt to varying oxygen levels, utilizing aerobic respiration when oxygen is available while switching to fermentation pathways under anaerobic conditions. This versatility enables it to occupy diverse ecological niches. E. coli UMN026 is known for its role as a model organism in microbiology and genetics, contributing significantly to our understanding of cellular processes. It also serves as a vital indicator organism in water quality testing, highlighting its presence in environments affected by fecal contamination. Moreover, some strains possess virulence factors that can result in foodborne illnesses, underscoring the complexity and duality of this ubiquitous microbe in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli UMN026 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic Multiple Free living Homo sapiens Pairs - Singles Nonsporulating Yes 585056 NC_011739.1 Bac0003652 Escherichia coli IAI39 "Escherichia coli IAI39 is a gram-negative, rod-shaped bacterium classified as a facultative anaerobe, thriving optimally at mesophilic temperatures (20-45°C). This strain, a variant of the common E. coli, belongs to the Enterobacteriaceae family and is primarily characterized by its ability to ferment lactose, producing gas and acid. As a heterotroph, E. coli IAI39 utilizes organic compounds as its primary source of energy and carbon, making it highly versatile in various environments, including soil, water, and the gastrointestinal tracts of warm-blooded animals. The gram-negative structure of E. coli IAI39 is defined by a thin peptidoglycan layer and an outer membrane composed of lipopolysaccharides. This outer membrane is significant for its role in pathogenicity, as it can resist certain antibiotics and allow the bacterium to evade the host's immune response. As a facultative anaerobe, E. coli IAI39 can switch between aerobic respiration and fermentation, enabling it to thrive in environments with or without oxygen, which is essential for its survival in diverse ecological niches. In addition to its ubiquitous presence in human and animal intestines, E. coli IAI39 has been studied for its ability to act as a model organism, contributing to our understanding of bacterial genetics, physiology, and pathogenicity. Its genomic flexibility allows it to acquire traits that can enhance its adaptability, including antibiotic resistance mechanisms. Moreover, this strain has been investigated for its potential role in bioremediation, leveraging its metabolic capabilities to degrade environmental pollutants, further showcasing its ecological importance and versatility." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli IAI39 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic Multiple Free living Homo sapiens Pairs - Singles Nonsporulating Yes 585057 NC_011750.1 Bac0003653 Mobiluncus curtisii subsp. curtisii ATCC 35241 "Mobiluncus curtisii subsp. curtisii ATCC 35241 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments, primarily associated with host organisms. This microbe is a member of the genus Mobiluncus, which is noted for its distinctive morphology and anaerobic lifestyle. M. curtisii subsp. curtisii is typically found in the human microbiome, particularly in the context of the vaginal environment, where it plays a role in the complex microbial community.↵↵As an anaerobe, M. curtisii subsp. curtisii has adapted to environments with low oxygen availability, utilizing fermentation pathways to generate energy. This capability is essential for its survival in various host-associated niches, where oxygen levels can be significantly reduced. The presence of this bacterium in host-associated habitats suggests that it may be involved in maintaining microbial balance and potentially influencing the local environment's biochemical processes.↵↵Furthermore, the unique combination of traits exhibited by M. curtisii subsp. curtisii, particularly its anaerobic nature and rod-shaped morphology, underscores its specialized adaptation to specific ecological niches. Understanding the role of this bacterium within the host-associated microbiome could provide insights into its contributions to health and disease states, emphasizing the importance of anaerobic microorganisms in complex microbial communities." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii Positive Rod Anaerobe Mesophilic HostAssociated Free living 585198 AEEE00000000.1 Bac0003654 Streptococcus mitis SK597 "Streptococcus mitis SK597 is a Gram-positive coccus that typically arranges itself in chains or pairs. This bacterium is nonsporulating and is known to thrive in host-associated habitats, indicating its adaptation to environments within a host organism. As a facultative anaerobe, S. mitis SK597 can grow in both the presence and absence of oxygen, which may contribute to its resilience in varying physiological conditions encountered within host tissues. ↵↵S. mitis species are often found as part of the normal microbiota of humans, particularly in the oral cavity and upper respiratory tract. Given that S. mitis SK597 is closely related to these environments, its presence may play a role in maintaining microbial balance and potentially influencing host health. The ability to survive and proliferate in diverse oxygen conditions suggests a versatile metabolic capability, which may enable it to adapt to different niches within the host. ↵↵In summary, the traits of Streptococcus mitis SK597 reflect its role as a commensal organism, potentially influencing the dynamics of microbial communities in host-associated environments, while its facultative anaerobic nature underscores its adaptability to varying oxygen levels within these ecological niches." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 585204 AEDV00000000.1 Bac0003655 Actinokineospora cianjurensis str. DSM 45657 "Actinokineospora cianjurensis str. DSM 45657 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its optimal growth temperature of 25.0°C. This microbe is part of the Actinobacteria phylum, known for its diverse metabolic capabilities and ecological roles in soil and other environments. The Gram-positive nature of A. cianjurensis indicates a thick peptidoglycan layer in its cell wall, which is a common feature among members of this phylum, often associated with resilience in various environmental conditions.↵↵The spore-forming ability of A. cianjurensis suggests its adaptation to survive in fluctuating environments, enabling it to withstand unfavorable conditions and contribute to its persistence in ecological niches. The optimal growth temperature of 25.0°C may indicate a preference for moderate environmental conditions, which could reflect its natural habitat. ↵↵Although specific ecological roles and interactions with other organisms remain to be detailed, the traits of A. cianjurensis suggest it may play a significant role in nutrient cycling or soil health. Its spore formation could also indicate potential applications in biotechnology, particularly in biocontrol or bioremediation strategies, where robust microorganisms are needed to thrive in diverse conditions. Further research into its metabolic pathways and ecological interactions could provide deeper insights into its potential benefits in ecological and industrial contexts." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora cianjurensis Gram-positive rod 25 mesophilic spore-forming 585224 RCDD00000000.1 Bac0003656 Roseburia hominis A2-183 "Roseburia hominis A2-183 is a microorganism that thrives in a mesophilic environment, with a temperature preference category of 25-45°C. As a heterotroph, it obtains its energy by breaking down complex organic molecules. The energy production process employed by Roseburia hominis A2-183 is fermentation, where it converts glucose into lactate and ethanol. This unique metabolism allows it to thrive in a variety of environments. Roseburia hominis A2-183 is gram-positive, indicating the presence of a thick peptidoglycan layer in its cell wall. The bacterium has a rod-like shape, with a length of approximately 3-6 micrometers. It is commonly found in the gastrointestinal tract of humans, where it plays a crucial role in the degradation of complex polysaccharides and the production of short-chain fatty acids. Roseburia hominis A2-183 is an obligate anaerobe, meaning it is unable to survive in the presence of oxygen. In fact, the bacterium is sensitive to even small amounts of oxygen, which can inhibit its growth and metabolic activities. Its anaerobic lifestyle allows it to thrive in environments where oxygen is limited or absent, such as the gastrointestinal tract. One of the most fascinating aspects of Roseburia hominis A2-183 is its ability to produce a unique mixture of short-chain fatty acids, including butyrate, acetate, and propionate. These compounds play a crucial role in the maintenance of gut health, serving as energy sources for the host and influencing the local immune responses. Further studies on Roseburia hominis A2-183 have revealed that it is capable of degrading a wide range of dietary fibers, including pectin, xylan, and arabinan. This ability allows it to play a crucial role in the degradation of complex plant material and the production of bioactive compounds. Overall, Roseburia hominis A2-183 is a remarkable microorganism that has adapted to thrive in the human gut, where it plays a vital role in maintaining our overall health and well-being. Its unique metabolic processes and ability to produce bioactive compounds make it a fascinating subject for further study and exploration." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia hominis Negative Anaerobe 585394 NC_015977.1 Bac0003657 Escherichia coli O103:H2 str. 12009 "Escherichia coli O103:H2 str. 12009 is a Gram-negative bacterium characterized by its rod shape, a temperature preference for mesophilic conditions (optimal growth at 37°C), and is classified as a heterotroph. This microbe is a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments. As a Gram-negative organism, E. coli O103:H2 str. 12009 possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structure plays a crucial role in its pathogenicity and resistance to certain antibiotics. Its rod-shaped morphology allows for motility, aided by flagella, which facilitates colonization and biofilm formation on various surfaces. Being mesophilic, this strain optimally grows at human body temperature, making it well-suited for life in the intestinal tract of warm-blooded animals, including humans. As a heterotroph, E. coli O103:H2 str. 12009 relies on organic compounds for energy and carbon sources, primarily deriving nutrients from the host's gut environment. As a facultative anaerobe, it can grow in the presence or absence of oxygen. This adaptability enables it to survive in different habitats, including the intestines, where it can exploit a variety of organic substrates. Beyond the gut, E. coli can be found in various environments, such as soil, water, and food sources, which increases its potential to enter the food chain and impact human health. In terms of pathogenicity, E. coli O103:H2 is notable for its association with foodborne illness outbreaks, particularly those linked to contaminated beef and leafy greens. Strain O103:H2 produces Shiga toxin, leading to hemolytic uremic syndrome (HUS) in severe cases, emphasizing the importance of food safety and hygiene practices to prevent infections caused by this strain." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli 12009 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 585395 NC_013354.1 Bac0003658 Escherichia coli O111:H- str. 11128 "Escherichia coli O111:H- str. 11128 is a Gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures, classified as a facultative anaerobe and a chemoheterotroph. As a member of the diverse Escherichia genus, this strain is typically found in the intestines of warm-blooded organisms, but its presence can extend to various body sites across multiple species, including the gastrointestinal tract of humans and animals, as well as various environmental niches such as soil and water. The Gram-negative staining characteristic of E. coli O111:H- str. 11128 indicates the presence of an outer membrane composed of lipopolysaccharides, contributing to its pathogenic potential. The rod shape facilitates motility through the use of flagella, allowing the bacterium to navigate its environment effectively. As a mesophilic organism, it prefers moderate temperature ranges, roughly between 20°C and 45°C, making it well-suited for survival in warm-blooded hosts. Being a facultative anaerobe, E. coli O111:H- str. 11128 has the versatility to grow in both aerobic and anaerobic conditions, depending on the availability of oxygen. This adaptability enhances its survival in diverse environments. As a chemoheterotroph, it derives its energy from organic compounds, utilizing a variety of substrates for metabolism. This particular strain of E. coli is noteworthy due to its potential to cause foodborne illnesses, especially linked to undercooked beef and unpasteurized dairy products. Its pathogenicity can be attributed to various virulence factors, such as Shiga toxin production, which can lead to severe gastrointestinal disease and complications like hemolytic uremic syndrome (HUS). Understanding strains like E. coli O111:H- str. 11128 is crucial for public health and food safety initiatives, reflecting the importance of monitoring microbial threats in our food supply." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli 11128 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 585396 NC_013367.1 Bac0003659 Escherichia coli ED1a "Escherichia coli ED1a is a gram-negative, rod-shaped bacterium that thrives in moderate temperatures as a mesophile. As a chemoheterotroph, it derives energy from organic compounds, utilizing various carbon sources for growth. This strain of E. coli is primarily found in the intestines of warm-blooded organisms, including humans, where it plays a significant role in digestion and nutrient absorption.As a facultative anaerobe, E. coli ED1a can grow in both aerobic and anaerobic environments, allowing it to adapt to fluctuating oxygen levels within the gastrointestinal tract. This flexibility enables it to thrive in diverse environments, whether oxygen-rich or lacking in this critical gas. The gram-negative characteristic of E. coli ED1a is notable, as the bacterium possesses a thin peptidoglycan layer and an outer membrane rich in lipopolysaccharides, which can influence its pathogenesis and resistance to antibiotics. E. coli ED1a is of particular interest in microbiological research due to its role as a model organism in genetics and molecular biology. It has been instrumental in advancing our understanding of cellular processes and genetic engineering techniques, making it a cornerstone in biotechnology and pharmaceutical development. Furthermore, certain strains of E. coli, including ED1a, are being studied for their potential benefits in probiotic formulations, highlighting their significance in promoting gut health. Notably, E. coli also plays a pivotal role in the nitrogen cycle, contributing to soil fertility and ecosystem balance through its metabolic activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli ED1a Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic Multiple Free living Homo sapiens Pairs - Singles Nonsporulating No 585397 NC_011745.1 Bac0003660 Synechococcus sp. KORDI-49 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. KORDI-49 585423 NZ_CP006270.1 Bac0003661 Thiohalobacter thiocyanaticus str. Hrh1 "Thiohalobacter thiocyanaticus strain Hrh1 is a rod-shaped, Gram-negative bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 32.0°C. This strain is notable for its ability to utilize thiocyanate as a sulfur source, which is a characteristic trait that distinguishes it within its ecological niche. ↵↵As a member of the microbial community, T. thiocyanaticus str. Hrh1 may play a significant role in biogeochemical cycles, particularly in environments where thiocyanate is prevalent. This could include areas impacted by agricultural runoff or industrial processes, where thiocyanate is commonly found as a contaminant. The organism's aerobic nature suggests it contributes to the degradation of sulfur-containing compounds in oxygen-rich environments, potentially aiding in the detoxification of such pollutants.↵↵In summary, T. thiocyanaticus str. Hrh1 exemplifies a specific adaptation to utilize thiocyanate, highlighting its potential importance in bioremediation processes within oxygenated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiohalobacterales Thiohalobacteraceae Thiohalobacter Thiohalobacter thiocyanaticus Gram-negative rod non-motile aerobic 32 mesophilic 585455 QZMU00000000.1 Bac0003662 Lactobacillus amylolyticus DSM 11664 "Lactobacillus amylolyticus DSM 11664 is a gram-positive, rod-shaped bacterium that thrives optimally at mesophilic temperatures. This heterotrophic microorganism exhibits facultative anaerobic behavior, allowing it to adapt to varying oxygen environments, making it versatile in its ecological niches. Found predominantly in the gastrointestinal tracts of various mammals, including humans, its presence is integral to maintaining gut health and efficient digestion. As a gram-positive organism, Lactobacillus amylolyticus possesses a thick peptidoglycan layer, which contributes to its structural integrity and influences its biochemical characteristics. The rod shape of this bacterium facilitates its movement and interaction with other microbial communities, enhancing its ability to colonize and function effectively within the harsh conditions of the gut. Due to its mesophilic temperature preference, it best thrives in environments that are conducive to human body temperatures (around 37°C), which is ideal for its biological activity and metabolic processes. Being heterotrophic, Lactobacillus amylolyticus relies on the consumption of organic compounds for energy, primarily fermenting carbohydrates to produce lactic acid as a byproduct. This fermentation process plays a pivotal role in lowering the pH of the gut, which creates an unfavorable environment for pathogenic bacteria, thereby promoting a healthy microbiome. Moreover, Lactobacillus amylolyticus is known for its ability to hydrolyze starch, a trait that facilitates its survival in carbohydrate-rich substrates. Its beneficial properties extend beyond digestion; it may also interact synergistically with other probiotics to enhance gut health and immune responses, offering potential applications in food technology and health maintenance." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylolyticus Positive Rod Facultative anaerobe 585524 ADNY00000000.1 Bac0003663 Corynebacterium genitalium ATCC 33030 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium genitalium 585529 ACLJ00000000.2 Bac0003664 Aeromicrobium marinum DSM 15272 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium marinum 585531 ACLF00000000.3 Bac0003665 Helicobacter pylori 35A "Helicobacter pylori 35A is a Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This microbe optimally thrives at a temperature of 37.0°C, which aligns with the typical human body temperature, indicating its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori 35A requires reduced levels of oxygen for growth, reflecting its specific ecological niche within the human gastric environment.↵↵The spiral morphology of H. pylori is thought to facilitate its motility, enabling the bacterium to navigate the viscous gastric mucus layer, thereby allowing it to colonize the stomach lining. The microaerophilic nature of this organism suggests that it has evolved mechanisms to survive and proliferate in the low-oxygen conditions prevalent in the gastric environment. This adaptation may also play a role in its interactions with the host's immune system and gastric microflora.↵↵Importantly, the ecological role of Helicobacter pylori 35A may extend beyond merely being a commensal organism. Its presence can influence gastric pH and local microbial communities, which can have implications for overall gastrointestinal health. Understanding the unique traits and ecological interactions of H. pylori 35A is crucial for elucidating its role in the human microbiome and potential impacts on host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 585535 NC_017360.1 Bac0003666 Helicobacter pylori 83 "Helicobacter pylori 83 is a Gram-negative microorganism characterized by its spirilla shape and single-cell arrangement. This bacterium is microaerophilic, meaning it thrives in environments with reduced oxygen levels, which aligns with its optimal growth temperature of 37.0°C, typical of the human body. H. pylori 83 is primarily host-associated, residing in the gastric mucus layer of the stomach, where it plays a significant role in the complex microbial ecosystem of the gastrointestinal tract.↵↵The unique morphology of H. pylori, with its spiral shape, enhances its motility, allowing it to navigate through the viscous gastric mucus and colonize the gastric epithelium effectively. This adaptation is crucial for its survival in the acidic environment of the stomach, where it can influence local pH levels and interact with the host's immune responses. Given its microaerophilic nature, H. pylori 83 occupies a niche that is both challenging and specialized, relying on a delicate balance of oxygen levels that are conducive to its growth and survival.↵↵Furthermore, the habitat specificity of H. pylori 83 highlights the intricate relationships between host-associated microbes and their hosts, suggesting that alterations in gastric microenvironmental conditions could significantly impact the dynamics of microbial colonization and host health. Understanding these interactions may provide insights into broader ecological and biological principles governing host-microbe relationships in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 585538 NC_017375.1 Bac0003667 Gluconobacter roseus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter roseus 586239 LHZP00000000.1 Bac0003668 Staphylococcus devriesei Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus devriesei 586733 PYZI00000000.1 Bac0003669 Pseudomonas chlororaphis "Pseudomonas chlororaphis is a Gram-negative, rod-shaped bacterium commonly found in specific ecological niches, including the nodules of Chamaecytisus albus and the rhizosphere. This microbe is known for its beneficial interactions with plant roots, where it contributes to nutrient cycling and may enhance plant growth through various mechanisms. ↵↵The habitat of Pseudomonas chlororaphis in the root nodules of legumes like Chamaecytisus albus suggests a role in symbiotic relationships, potentially aiding in nitrogen fixation processes. In addition to its presence in root nodules, its location in the rhizosphere indicates that it may engage in interactions with other soil microorganisms, thereby influencing the microbial community structure and function in this environment.↵↵Pseudomonas species, including Pseudomonas chlororaphis, are often recognized for their metabolic versatility and capability to produce various secondary metabolites. Such traits can have implications for plant health and soil dynamics, although specific metabolic pathways and interactions remain to be fully elucidated in this species. The unique ecological niche that Pseudomonas chlororaphis occupies highlights its potential role in sustainable agricultural practices, particularly in promoting plant health and enhancing soil fertility through its interactions with host plants and other microbial populations." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis negative Rod nodules of Chamaecytisus albus; rhizosphere; root nodules 587753 NZ_LT629747.1 Bac0003670 Amycolatopsis arida "Amycolatopsis arida is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 45.0°C. This microbe is characterized by its non-spore-forming nature, distinguishing it from many other members of the Actinobacteria phylum, which often have a propensity for sporulation. The aerobic requirement indicates that A. arida relies on oxygen for its metabolic processes, which may influence its habitat preferences and interactions within microbial communities. ↵↵The thermal preference of A. arida suggests a potential adaptation to warmer environments, possibly contributing to its survival and activity in thermophilic niches. This trait may also reflect evolutionary adaptations to specific ecological roles, such as the degradation of organic materials at elevated temperatures. ↵↵In terms of ecological significance, A. arida's characteristics may position it as a key player in biogeochemical cycles, particularly in environments where organic matter decomposition occurs at higher temperatures, such as in composts or thermally influenced soils. Further studies could elucidate its functional roles within these ecosystems, potentially revealing novel pathways for biotechnological applications." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis arida Gram-positive rod non-motile aerobic 45 thermophilic non-spore-forming 587909 FOWW00000000.1 Bac0003671 Prauserella muralis str. DSM 45305 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella muralis 588067 MASW00000000.1 Bac0003672 Ruminiclostridium papyrosolvens DSM 2782 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminiclostridium Ruminiclostridium papyrosolvens 588581 ACXX00000000.2 Bac0003673 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S "Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This strain optimally thrives at a temperature of 37.0°C, which coincides with the body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a chemoorganotroph, S. Typhimurium str. 14028S utilizes organic compounds as its energy source, which is typical for microbes that inhabit environments rich in organic material, such as the gastrointestinal tracts of animals.↵↵The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for growth, which may influence its metabolic processes and interactions within the host environment. The ability to form chains may also play a role in its survival and colonization strategies, potentially facilitating cooperation among cells or enhancing resistance to host defenses.↵↵Understanding the traits of S. enterica subsp. enterica serovar Typhimurium str. 14028S not only provides insights into its physiological characteristics but also highlights its ecological niche within host organisms, where it may engage in complex interactions with the host microbiota and immune system. Such dynamics could be critical for its survival and proliferation within the host ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 588858 NC_016856.1 Bac0003674 Natronorubrum daqingense Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense 588898 FTNP00000000.1 Bac0003675 Haloterrigena daqingensis str. JX313 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense 588898 NZ_CP019330.1 Bac0003676 Brevundimonas naejangsanensis Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas naejangsanensis 588932 NZ_CP038027.1 Bac0003677 Brevundimonas naejangsanensis str. B1 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas naejangsanensis 588932 NZ_CP015614.1 Bac0003678 Micromonospora pisi str. DSM 45175 "Micromonospora pisi strain DSM 45175 is a Gram-positive, aerobic bacterium characterized by its ability to form spores and its optimal growth temperature of 29.0°C. This species belongs to the genus Micromonospora, which is renowned for its role in soil ecosystems and its potential utility in biotechnological applications, particularly in the production of antibiotics. ↵↵Being a spore-forming organism, M. pisi str. DSM 45175 possesses a survival strategy that allows it to withstand adverse environmental conditions, thereby contributing to its resilience in various habitats. The aerobic nature of this bacterium suggests that it thrives in oxygen-rich environments, which may influence its ecological niches, particularly in well-aerated soils or decaying organic matter where it can contribute to the decomposition process.↵↵The optimal growth temperature of 29.0°C indicates that M. pisi str. DSM 45175 is adapted to moderate thermal conditions, which may reflect the climatic conditions of its natural habitat. Understanding the traits of this organism can provide insights into its functional role in microbial communities, especially in nutrient cycling and organic matter degradation. Further studies could reveal the specific ecological impacts of this strain, particularly in its interactions with other soil microorganisms and its contributions to soil health and fertility." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora pisi Gram-positive non-motile aerobic 29 mesophilic spore-forming 589240 RBKT00000000.1 Bac0003679 Amycolatopsis thailandensis str. JCM 16380 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis thailandensis 589330 NMQT00000000.1 Bac0003680 Agromyces flavus Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces flavus 589382 NZ_LT629755.1 Bac0003681 Thermotoga petrophila RKU-10 "Thermotoga petrophila RKU-10 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating anaerobe that thrives optimally at 80.0°C. This organism is classified as a heterotroph, indicating its reliance on organic compounds for energy. Thermotoga petrophila RKU-10 is typically found in aquatic habitats, where it likely plays a role in the degradation of organic materials in high-temperature environments.↵↵The organism's ability to survive and metabolize in extreme thermal conditions suggests a unique adaptation to its habitat, potentially allowing it to contribute to biogeochemical cycles in geothermal ecosystems. The anaerobic nature of Thermotoga petrophila RKU-10 implies that it may participate in processes such as fermentation, which can influence the microbial community structure and nutrient dynamics in its environment. Overall, the presence of this bacterium in aquatic settings emphasizes the diversity of life forms that can thrive under extreme conditions and their potential significance in ecological interactions and nutrient cycling." Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila Negative Rod No 1 2 Anaerobe 80 Heterotroph Hyperthermophilic Aquatic Free living Nonsporulating 590168 NC_013642.1 Bac0003682 Dickeya parazeae Ech586 "Dickeya parazeae Ech586 is a Gram-negative, rod-shaped bacterium that exhibits a diverse cell arrangement, appearing in pairs, singles, and chains. This microbe is nonsporulating, indicating that it does not form spores as part of its life cycle. D. parazeae Ech586 is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its adaptability to various habitats suggests a versatile ecological role, potentially enabling it to inhabit diverse niches. ↵↵The presence of D. parazeae Ech586 in multiple habitats points to its ecological flexibility, which may facilitate interactions with various environmental factors and other organisms. This adaptability may play a significant role in its survival and proliferation under fluctuating conditions. Understanding the traits of D. parazeae Ech586 can contribute to a broader comprehension of its ecological dynamics and interactions within its environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya parazeae Negative Rod No 1 2 Facultative Mesophilic Multiple Free living Pairs-Singles-Chains Nonsporulating 590409 NC_013592.1 Bac0003683 Mycobacterium paraseoulense "Mycobacterium paraseoulense is a rod-shaped bacterium characterized by its non-spore-forming nature and an optimal growth temperature of 37.0°C. This organism belongs to the genus Mycobacterium, which is known for its resilient cell wall structure that contributes to its survival in various environments. The temperature preference of M. paraseoulense aligns with that of many pathogenic and environmental mycobacteria, suggesting a possible adaptation to mammalian hosts or warm-blooded environments. ↵↵The non-spore-forming trait indicates that M. paraseoulense may rely on other survival strategies, such as biofilm formation or metabolic adaptations, to endure unfavorable conditions. The ability to thrive at 37.0°C may also imply a potential role in the microbiomes associated with warm-blooded animals, including humans, although direct associations have not been established. ↵↵Further ecological implications of M. paraseoulense may include its interactions with other microbial communities in thermophilic environments or within host organisms, which could influence nutrient cycling or microbial dynamics. Understanding the precise ecological niche and interactions of M. paraseoulense could provide valuable insights into its role within microbiomes and its potential applications in biotechnology or medicine." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paraseoulense rod non-motile 37 mesophilic non-spore-forming 590652 MVIE00000000.1 Bac0003684 Staphylothermus hellenicus DSM 12710 "Staphylothermus hellenicus is a hyperthermophilic heterotroph that requires sulfur for growth. It was isolated from a hydrothermal vent off Palaeochori Bay, Milos, Greece in 1996 at a depth of 9.4 m. It grows as non-flagellated regular cocci, 0.8 to 1.3 um in diameter, often forming large aggregates of up to 50 cells. Growth is optimal at 85 degrees C, pH 6 and prefers 4% NaCl. It is an obligate anaerobe. Staphylothermus hellenicus is closely related to Staphylothermus marinus, for which the genome sequence has been determined. There are several unique features in the S. marinus genome, including a sodium ion-translocating decarboxylase and three large membrane protein complexes related to the mbh and mbx genes of Pyrococcus furiosus. One or more of these membrane complexes is likely to be involved in sulfur reduction. It will be interesting to compare the two Staphylothermus genomes. As a hyperthermophile, S. hellenicus could serve as a source of heat-stable enzymes for biotechnology. (HAMAP: STAHD)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus hellenicus DSM 12710 Cocci No 1 1 Anaerobic 85 Heterotroph Hyperthermophilic Specialized Free living Clusters Nonsporulating No 591019 NC_014205.1 Bac0003685 Shigella flexneri 2002017 "Shigella flexneri 2002017 is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can colonize all body sites in various species, including humans, and is a facultative anaerobe. As a gram-negative bacterium, Shigella flexneri 2002017 has a distinctive outer membrane containing lipopolysaccharides, which plays a crucial role in its pathogenicity. Its rod-shaped morphology allows for efficient movement and invasion of host cells. The mesophilic temperature preference of this microbe enables it to thrive in temperatures between 20-45°C, making it well-suited to infecting human hosts. As a chemoheterotroph, Shigella flexneri 2002017 relies on organic compounds for energy and carbon, which it obtains from its host environment. This microbe can infect all body sites, including the gastrointestinal tract, and is capable of surviving in various species. Its classification as a facultative anaerobe means it can grow in both aerobic and anaerobic conditions, allowing it to adapt to different environments within the host. The ability of Shigella flexneri 2002017 to invade and multiply within host cells leads to severe diarrhea and dysentery. This microbe has been implicated in large outbreaks of foodborne and waterborne illnesses, and its ability to develop antibiotic resistance makes it a significant public health concern, with ongoing research focused on developing effective treatments and preventative measures against Shigella flexneri 2002017 infections." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 591020 NC_017320.1 Bac0003686 Streptomyces sp. SPB78 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SPB78 591157 ACEU00000000.1 Bac0003687 Streptomyces viridochromogenes DSM 40736 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces viridochromogenes 591159 ACEZ00000000.1 Bac0003688 Arcicella aurantiaca str. DSM 22214 "Arcicella aurantiaca strain DSM 22214 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microorganism thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. As a member of the microbial community, Arcicella aurantiaca str. DSM 22214 contributes to various biogeochemical cycles, particularly in environments that favor aerobic processes.↵↵The Gram-negative nature of this bacterium indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may influence its interactions with other microorganisms and its resistance to certain antibiotics. The rod shape is indicative of its morphology, which may play a role in its motility and the ability to colonize different substrates.↵↵Given its aerobic requirement, Arcicella aurantiaca str. DSM 22214 likely participates in oxygen-dependent metabolic pathways, potentially impacting the dynamics of microbial communities in oxygen-rich environments. Its non-spore-forming trait suggests that it may be less resilient to extreme environmental stresses compared to spore-forming bacteria, which could limit its survival in harsh conditions. Overall, the biological characteristics of Arcicella aurantiaca str. DSM 22214 underscore its potential role in aerobic ecosystems, where it may contribute to the degradation of organic matter and the cycling of nutrients." Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Arcicella Arcicella aurantiaca Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 591202 QGGO00000000.1 Bac0003689 Clostridium botulinum D str. 1873 "Clostridium botulinum D str. 1873 is a Gram-positive, rod-shaped bacterium characterized by its ability to form pairs, singles, or chains. This anaerobic organism thrives optimally at a temperature of 37.0°C, indicating its potential adaptability to human-associated environments. As a chemoorganotroph, C. botulinum D str. 1873 utilizes organic compounds for energy, which is typical for many bacteria residing in diverse habitats, including soil and decaying organic matter.↵↵The strain’s anaerobic nature suggests it is well-suited for environments with limited oxygen availability, which can include deep soils and the anaerobic conditions found in certain food products. The capacity to form various cellular arrangements may enhance its survival and colonization in different substrates or conditions, providing it with a versatile ecological niche.↵↵Overall, the ability of C. botulinum D str. 1873 to thrive in multiple habitats and utilize organic sources for energy underscores its ecological adaptability, which may have implications for its interactions within microbial communities and environments where it is found. Further studies could illuminate its role within these communities and its potential impact on the cycling of organic materials." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 592027 NC_012945.1 Bac0003690 Kytococcus aerolatus Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus aerolatus aerobic 592308 FYEZ00000000.1 Bac0003691 Pantoea sp. At-9b "Pantoea sp. (strain At-9b) is a cellulose-degrading Gram-negative bacterium isolated from the fungus gardens of Atta cephalotes leaf-cutter ants. Pantoea sp. has the capacity to degrade cellulose, and thus may play a role as cellulose-degrading symbionts in the gardens of leaf-cutter ants. The symbiosis between these bacteria and leaf-cutter ants is further supported by previous work, which showed they can be consistently isolated from fungus gardens across the diversity and geography of leaf-cutter ants. Indeed, these bacteria appear to be responsible for a significant amount of the nitrogen that is fixed in leaf-cutter fungus gardens; nitrogen that has been shown to be integrated into the ants. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/33803 and 20885794). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. At-9b At-9b Negative Bacilli No 1 2 Facultative Mesophilic Multiple Free living Nonsporulating No 592316 NC_014842.1 Bac0003692 Agromyces atrinae str. DSM 23870 "Agromyces atrinae strain DSM 23870 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 29.0°C. This microbe belongs to the genus Agromyces, which is known for its diverse ecological roles and ability to thrive in various environments. ↵↵The Gram-positive nature of A. atrinae indicates the presence of a thick peptidoglycan layer in its cell wall, a feature that may confer advantages in specific environmental conditions, including resistance to certain external stressors. The rod shape of this organism is typical among many members of the Actinobacteria phylum, suggesting a potential for filamentous growth under certain circumstances, although such growth has not been specifically documented for this strain.↵↵As an aerobic organism, A. atrinae relies on oxygen for its metabolic processes, which may influence its ecological niche, likely favoring environments where oxygen is readily available. The optimal growth temperature of 29.0°C suggests a preference for moderate temperatures, potentially aligning with habitats such as soil or decomposing organic matter, where microbial activity is prevalent.↵↵Overall, Agromyces atrinae str. DSM 23870 exemplifies the functional diversity within the Agromyces genus, and its traits may contribute to its role in nutrient cycling, particularly in warm, oxygen-rich environments. Further studies could elucidate its specific ecological functions and interactions within microbial communities." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces atrinae Gram-positive rod non-motile aerobic 29 mesophilic 592376 SDPM00000000.1 Bac0003693 Thermococcus gammatolerans EJ3 "Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) is an obligatory anaerobic heterotrophic hyperthermophilic archaeon isolated from samples collected from hydrothermal chimneys located in the mid-Atlantic Ridge and at the Guyamas basin. T. gammatolerans is obtained by culture enrichment after irradiation with gamma rays at massive doses (30 kGy). It grows optimally at 88 degrees Celsius in the presence of sulfur or cystine on yeast extract, tryptone and peptone, producing H2S. This organism withstands 5 kGy of radiation without any detectable lethality. Exposure to higher doses slightly reduces its viability whereas cell survival of other thermophilic radioresistant archaea drastically decreases when cells are exposed to such radiation doses. Based on these data, T. gammatolerans is one of the most radioresistant archaeon isolated and characterized thus far. An important feature of the T. gammatolerans genome is the absence of genes encoding transposases found in other Archaea, indicating they are not played a role in the evolution of the Thermococcus genomes. The genome of T. gammatolerans contains two virus-related regions, tgv1 (20,832 bp) and tgv2 (20,418 bp). Even if T. gammatolerans is grown with peptides and S, numerous metabolic pathways appear to be active, including those involved in sugar catabolism and amino acid metabolism. (Adaptated from PMID:19558674). (HAMAP: THEGJ)" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus gammatolerans EJ3 Cocci No 1 1 Anaerobe 88 Organotroph Hyperthermophilic Specialized Free living Nonsporulating No 593117 NC_012804.1 Bac0003694 Vibrio cholerae VL426 "Vibrio cholerae VL426 is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells. This strain exhibits facultative anaerobic respiration, which allows it to thrive in both aerobic and anaerobic environments. As a heterotroph, V. cholerae VL426 derives its energy from organic compounds, facilitating its survival in diverse habitats. ↵↵The optimal growth temperature for this strain is approximately 20.0 °C, suggesting that it may be well-adapted to cooler aquatic environments where it could potentially interact with various microbial communities. The ability to exist in multiple habitats underscores the organism's ecological versatility, potentially allowing it to exploit a range of ecological niches. ↵↵This adaptability may also confer ecological advantages, enabling V. cholerae VL426 to respond to fluctuating environmental conditions. As a facultative anaerobe, it can switch between aerobic and anaerobic metabolic pathways, which may facilitate its persistence in varying oxygen levels found in natural water bodies. This trait could be crucial for its survival and growth in environments that experience seasonal changes in oxygen availability. Overall, the physiological traits of V. cholerae VL426 reflect its capacity to occupy diverse ecological niches, highlighting its role in microbial dynamics within aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 593585 ACHV00000000.1 Bac0003695 Salmonella enterica subsp. enterica serovar Corvallis "Salmonella enterica subsp. enterica serovar Corvallis is a Gram-negative bacterium characterized by its spirilla shape and tendency to arrange in chains or as singles. This microbe is classified as a chemoorganotroph, utilizing organic compounds as its energy source, which aligns with its adaptation to a host-associated habitat. Optimal growth occurs at 37.0°C, a temperature that coincides with the physiological conditions found within many animal hosts. ↵↵As a microaerophilic organism, Salmonella enterica serovar Corvallis requires reduced levels of oxygen for growth, which further supports its lifestyle in host-associated environments where oxygen availability may be limited. The combination of these traits suggests that this serovar may play a role in specific ecological niches within the gastrointestinal tracts of various animals, where microaerophilic conditions prevail.↵↵Collectively, the physiological characteristics of Salmonella enterica subsp. enterica serovar Corvallis illustrate its potential adaptability and survival strategies in host-associated environments, highlighting the intricate relationships that exist between this bacterium and its potential hosts. Further research may elucidate its specific ecological roles and interactions within microbial communities in the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 593905 SMPP00000000.1 Bac0003696 Allofrancisella guangzhouensis str. 08HL01032 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Allofrancisella Allofrancisella guangzhouensis 594679 NZ_CP010428.1 Bac0003697 Rhodopirellula islandica str. K833 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula islandica 595434 LECT00000000.1 Bac0003698 Tolumonas auensis DSM 9187 "Tolumonas auensis (strain DSM 9187 / TA4) is a toluene-producing nonmotile Gram-negative bacterium isolated from anoxic sediments of a freshwater lake. Toluene is produced from phenylalanine, phenylpyruvate, phenyllactate, and phenylacetate, and phenol is produced from tyrosine. Both the presence of a carbon source and the presence of a toluene precursor are essential for initiation of toluene production. Toluene is accumulated during the course of the year in the hypolimnion of a eutrophic lake, and accumulation begins as soon as stratification of the water occurs and anoxic conditions are established. The optimum temperature and pH for growth are 22 degrees Celsius and pH 7.2, respectively. Bacterial growth occurs under oxic and anoxic conditions. Acetate, ethanol, and formate are the major fermentation products of the bacterium when it grows on glucose. The major lipoquinones are ubiquinone 8 and menaquinone 8 under both oxic and anoxic growth conditions. (Adaptated from 8573493). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Tolumonas Tolumonas auensis DSM 9187 Negative Rod No 1 2 Facultative 22 Chemoorganotroph Mesophilic Aquatic Free living Pairs - Singles Nonsporulating No 595494 NC_012691.1 Bac0003699 Brucella ceti str. Cudo "Brucella ceti str. Cudo is a Gram-negative, ovoid-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0°C. This species is part of the Brucella genus, which is known for its association with marine mammals, particularly cetaceans. The bacterium's Gram-negative status is indicative of its unique cell wall structure, which is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. ↵↵Adaptations to aerobic environments suggest that Brucella ceti str. Cudo may possess efficient metabolic pathways for utilizing oxygen, potentially influencing its survival and proliferation in marine ecosystems. The optimal growth temperature of 37.0°C aligns well with the body temperatures of many marine mammals, hinting at a possible niche specialization within these hosts. ↵↵Understanding the traits of Brucella ceti str. Cudo can provide insights into its ecological role in marine environments, particularly concerning its interactions with marine mammals and the potential implications for marine microbiomes. Further research into its metabolic capabilities and ecological interactions could yield valuable information about its function within the broader context of marine health and microbial community dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella ceti Gram-negative ovoid non-motile aerobic 37 mesophilic 595497 ACJD00000000.1 Bac0003700 Burkholderia pseudomallei Pakistan 9 "Burkholderia pseudomallei Pakistan 9 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic characteristics. As a member of the Burkholderia genus, this microbe is adapted to oxygen-rich habitats, which is indicative of its potential ecological versatility. The rod shape of B. pseudomallei facilitates motility and colonization in various substrates, allowing it to exploit a range of ecological niches.↵↵The terrestrial habitat of B. pseudomallei Pakistan 9 suggests a possible association with soil and water ecosystems, where it may play a role in nutrient cycling and microbial community dynamics. This bacterium's aerobic nature implies that it relies on oxygen for its metabolic processes, which may influence its distribution and interactions with other microbial inhabitants in its environment.↵↵Given its terrestrial lifestyle, B. pseudomallei Pakistan 9 may also interact with flora and fauna, potentially influencing plant health or contributing to the microbial diversity of the soil microbiome. The ecological implications of this bacterium's presence in soil ecosystems warrant further investigation to understand its role in biogeochemical cycles and its interactions with other organisms in its habitat." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 595498 ACKA00000000.1 Bac0003701 Kushneria sinocarnis str. DSM 23229 "Kushneria sinocarnis strain DSM 23229 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and exhibits optimal growth at 37.0 °C. This mesophilic microbe is characterized by its rod-like morphology, which is typical of many members within its phylogenetic context. The Gram-negative nature of Kushneria sinocarnis suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that can influence its interactions within various environments.↵↵The aerobic requirement indicates that Kushneria sinocarnis relies on oxygen for its metabolic processes, which may influence its habitat preferences and interactions with other microbial communities. Such adaptability to a temperature of 37.0 °C points to its potential association with warm-blooded hosts, although specific ecological niches have not been detailed in the available data.↵↵Given its characteristics, Kushneria sinocarnis may play a role in biogeochemical cycles, particularly in environments rich in organic matter where aerobic metabolism is prevalent. Its metabolic capabilities could contribute to the degradation of complex organic compounds, thereby influencing nutrient cycling and ecosystem dynamics in its native habitat. This highlights the importance of studying such microorganisms in understanding their roles within microbial communities and their potential applications in biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Kushneria Kushneria sinocarnis Gram-negative rod non-motile aerobic 37 mesophilic 595502 RBIN00000000.1 Bac0003702 Acinetobacter kyonggiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter kyonggiensis 595670 FNPK00000000.1 Bac0003703 Solidesulfovibrio fructosivorans JJ] Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio fructosivorans 596151 AECZ00000000.1 Bac0003704 Alicycliphilus denitrificans BC "Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Alicycliphilus Alicycliphilus denitrificans BC Negative Bacilli Yes 1 2 Facultative Mesophilic Aquatic Free living No 596153 NC_014908.1 Bac0003705 Alicycliphilus denitrificans K601 "Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Alicycliphilus Alicycliphilus denitrificans K601 Negative Yes 1 2 Facultative Mesophilic Free living No 596154 NC_015423.1 Bac0003706 Salmonella enterica subsp. enterica serovar Infantis str. SARB27 str. SARB 27 "Salmonella enterica subsp. enterica serovar Infantis str. SARB27 (SARB 27) is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as single cells. This strain thrives optimally at 37.0°C, making it well-suited for survival in host-associated environments, such as the gastrointestinal tracts of various animals. As a chemoorganotroph, SARB 27 utilizes organic compounds as its primary energy source, indicating its metabolic versatility in nutrient-rich habitats.↵↵SARB 27 exhibits a microaerophilic oxygen requirement, suggesting that it prefers environments with lower levels of oxygen compared to atmospheric conditions. This trait may reflect its adaptation to the intestinal microbiome, where oxygen concentrations are often limited. The ability to form chains could be advantageous for colonization and persistence within host environments, potentially facilitating interactions with other microbial species and contributing to niche establishment.↵↵Overall, the combination of its Gram-negative cell wall structure, optimal growth temperature, and microaerophilic lifestyle underscores SARB 27's adaptation to host-associated habitats. Further studies could elucidate the ecological roles of this strain within the microbiota of its hosts, particularly in how it interacts with both host and other microbial communities in the gastrointestinal environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 596155 NZ_CM001274.1 Bac0003707 Micrococcus luteus SK58 "Micrococcus luteus SK58 is a Gram-positive, aerobic cocci bacterium commonly found in diverse habitats. This species is characterized by its distinctive tetrad arrangement, where cells divide in multiple planes to form groups of four. The ability to thrive in various environments suggests a high level of adaptability, allowing M. luteus SK58 to inhabit both natural and artificial settings.↵↵As an aerobic organism, Micrococcus luteus SK58 requires oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. Its presence in multiple habitats could indicate its role in the decomposition of organic matter or its involvement in biogeochemical cycles. Moreover, the adaptability of M. luteus SK58 to different environments may reflect its potential utility in biotechnology, particularly in applications related to bioremediation or microbial fuel cells. Further research on this strain could provide insights into its metabolic pathways and interactions within microbial communities, enhancing our understanding of its ecological significance and possible applications in environmental microbiology." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads 596312 ADCD00000000.1 Bac0003708 Peptostreptococcus stomatis DSM 17678 "Peptostreptococcus stomatis DSM 17678 is a Gram-positive, coccoid-shaped bacterium that thrives in thermophilic conditions, classified as a chemotroph, and is an obligate anaerobe. This microbe is part of the normal flora of human and animal oral cavities, gastrointestinal tracts, and other mucosal surfaces, contributing to the complex ecosystem of microbial communities in these environments. As a Gram-positive organism, Peptostreptococcus stomatis possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during Gram staining, imparting a characteristic purple hue. Its coccoid shape allows for efficient adaptation to various niches within the body. As part of the temperature preference category of thermophiles, this microbe can withstand and thrive in higher temperatures, making it well-suited for the warm environments found in the oral and gastrointestinal tracts. Being a chemotroph, Peptostreptococcus stomatis derives energy from the chemical compounds in its surroundings, particularly through the fermentation of carbohydrates and amino acids. This metabolic capability supports its survival in anaerobic conditions. As an obligate anaerobe, it cannot survive in environments with oxygen; therefore, it plays a crucial role in balancing the microbial ecology within anaerobic habitats. Peptostreptococcus stomatis is notable for its involvement in human health and disease, acting as a commensal organism that maintains oral and gut health while also having the potential to contribute to infections when the host's immune defenses are compromised. Its presence in various body sites underscores its adaptability and importance in both symbiotic and pathogenic roles within the microbial community. The ability of this microbe to ferment both carbohydrates and amino acids also offers potential applications in biotechnology, particularly in the development of probiotics and bioconversion processes." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus stomatis Positive Cocci Anaerobe 37 mesophilic spore-forming 596315 ADGQ00000000.1 Bac0003709 Pseudoleptotrichia goodfellowii F0264 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii 596323 ADAD00000000.1 Bac0003710 Porphyromonas uenonis 60-3 "Porphyromonas uenonis 60-3 is a gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, making it an obligate anaerobe. This microbe prefers a mesophilic temperature range, typically falling between 25°C and 37°C, which aligns well with its ecological niches. As a chemoheterotroph, Porphyromonas uenonis 60-3 utilizes organic compounds as its source of carbon and energy, often degrading proteins and other complex molecules in its environment. This organism is primarily found in the oral cavity, specifically within dental plaque and periodontal pockets, where it plays a role in the pathogenesis of periodontal disease. It is associated with various body sites in humans, particularly in areas with high concentrations of anaerobic bacteria. Its presence in the oral microbiome highlights its significance in maintaining microbial balance and its potential contribution to oral health. The metabolic activities of Porphyromonas uenonis 60-3 contribute to the breakdown of collagen and other tissues, which can lead to gum inflammation and tooth loss if dysbiosis occurs. This microbe's ability to thrive in low-oxygen environments and its unique metabolic pathways enable it to outcompete certain pathogens, thereby influencing the overall composition of the oral microbiome. Porphyromonas uenonis 60-3 has been studied for its production of virulence factors and enzymes that facilitate tissue destruction during periodontal diseases. Understanding its genetics and biochemical pathways could provide insights into novel therapeutic approaches for managing periodontal infections and preserving oral health. Its role in interspecies interactions within biofilms also presents a fascinating area for further research in microbiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas uenonis Negative Anaerobe 596327 ACLR00000000.1 Bac0003711 Mobiluncus mulieris 28-1 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris 596328 ADBR00000000.1 Bac0003712 Brenneria sp. EniD312 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria sp. EniD312 598467 AFWW00000000.1 Bac0003713 Labedaea rhizosphaerae str. DSM 45361 "Labedaea rhizosphaerae str. DSM 45361 is a Gram-positive, aerobic bacterium that exhibits spore-forming capabilities and has an optimal growth temperature of 32.0°C. This bacterium is part of the diverse microbial communities found in rhizospheric environments, where it potentially plays a role in nutrient cycling and plant-microbe interactions.↵↵As a Gram-positive organism, Labedaea rhizosphaerae str. DSM 45361 possesses a thick peptidoglycan layer in its cell wall, which can influence its resilience to environmental stresses and its interaction with other microbes. The ability to form spores allows this strain to withstand unfavorable conditions, contributing to its survival and persistence in the dynamic rhizosphere ecosystem. ↵↵The aerobic nature of Labedaea rhizosphaerae suggests that it relies on oxygen for its metabolic processes, which may affect its distribution and activity in soil environments where oxygen availability varies. The optimal growth temperature of 32.0°C indicates that this bacterium thrives in warm conditions, which could align with the temperature profiles typical of certain soil habitats.↵↵Overall, the traits of Labedaea rhizosphaerae str. DSM 45361 suggest that it may be well adapted to specific ecological niches in the rhizosphere, potentially influencing plant health and soil fertility through its metabolic activities and interactions with other soil microorganisms. Further research could illuminate its specific roles in these complex ecological networks." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Labedaea Labedaea rhizosphaerae Gram-positive non-motile aerobic 32 mesophilic spore-forming 598644 SNXZ00000000.1 Bac0003714 Aeromonas piscicola str. AH-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas piscicola 600645 LYXO00000000.1 Bac0003715 Flavobacterium sinopsychrotolerans "Flavobacterium sinopsychrotolerans is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and aerobic metabolism, thriving optimally at a temperature of 16.0°C. This species belongs to the genus Flavobacterium, which is known for its diverse ecological roles in aquatic environments. The Gram-negative cell wall structure of F. sinopsychrotolerans contributes to its adaptability in various habitats, potentially influencing its interactions with other microorganisms and its overall ecological niche.↵↵Due to its optimal growth temperature of 16.0°C, F. sinopsychrotolerans is likely well-suited to cooler aquatic environments, such as those found in polar or temperate regions. Its aerobic requirement suggests that it plays a role in oxygen-rich habitats, possibly contributing to the decomposition of organic matter and nutrient cycling in these ecosystems. The non-spore-forming characteristic indicates that F. sinopsychrotolerans may rely on moisture and favorable environmental conditions for survival, which could limit its distribution to specific niches where such conditions prevail.↵↵The presence of F. sinopsychrotolerans in colder, oxygenated waters may indicate its potential role in biogeochemical processes, particularly in the breakdown of organic substrates and interactions with other microbial communities. Understanding its ecological role could provide insights into the functioning of aquatic ecosystems, especially in the context of climate change and shifting environmental conditions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sinopsychrotolerans Gram-negative rod aerobic 16 psychrotolerant non-spore-forming 604089 FODN00000000.1 Bac0003716 Thermococcus sibiricus MM 739 "Thermococcus sibiricus (strain MM 739 / DSM 12597) is a hyperthermophilic anaerobic archaeon isolated from a well of the never flooded oil-bearing Jurassic horizon of a high-temperature oil reservoir. T. sibiricus indicate the ability to metabolize the buried organic matter from the original oceanic sediment. Its numerous hydrolytic enzymes (e.g., cellulolytic enzymes, agarase, laminarinase, and lipases) and metabolic pathways, support the proposal of the indigenous origin of T. sibiricus in the oil reservoir, and explain its survival over geologic time and its proliferation in this habitat. Indeed, in addition to proteinaceous compounds known previously to be present in oil reservoirs at limiting concentrations, its growth is stimulated by cellulose, agarose, and triacylglycerides, as well as by alkanes. Two polysaccharide degradation loci are probably acquired by T. sibiricus from thermophilic bacteria following lateral gene transfer events. The first, a ""saccharolytic gene island"" absent in the genomes of other members of the order Thermococcales, contains the complete set of genes responsible for the hydrolysis of cellulose and beta-linked polysaccharides. The second harbors genes for maltose and trehalose degradation. Moreover, T. sibiricus probably possesses a new mechanism of n-alkane degradation, since its growth is stimulated by hexadecane and no enzymes of currently known pathways are encoded. Not reported so far for hyperthermophilic archaea is the lipolytic growth of T. sibiricus on triacylglycerides. This growth is apparently enabled by the function of an extracellular true lipase(s) encoded by the genome. (Adaptated from PMID:19447963). (HAMAP: THESM)" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sibiricus MM 739 Cocci Yes 1 1 Anaerobic Organotroph Hyperthermophilic Hot spring Free living Nonsporulating No 604354 NC_012883.1 Bac0003717 Caldicellulosiruptor obsidiansis OB47 "Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) is an extremely thermophilic anaerobic Gram-positive bacterium isolated from Obsidian Pool, Yellowstone National Park, USA, in enrichment cultures containing dilute acid-pretreated switchgrass as the primary carbon and energy source, for bioprocessing. It is a novel cellulolytic bacterium capable of hydrolyzing plant-derived polymers through the expression of multidomain/multifunctional hydrolases. (Adapted from PMID: 20851897). (EBI Integr8)" Bacillati Bacillota Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor obsidiansis OB47 Positive Bacilli No 1 1 Anaerobic 80 Hyperthermophilic Multiple Free living Pairs- Singles Nonsporulating No 608506 NC_014392.1 Bac0003718 Oribacterium sp. oral taxon 078 str. F0262 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Oribacterium Oribacterium sp. oral taxon 078 608534 ACIQ00000000.2 Bac0003719 [Clostridium] saccharolyticum WM1 "[Clostridium] saccharolyticum WM1 is a Gram-negative, rod-shaped bacterium that exhibits a sporulating capability and thrives in anaerobic environments. This microbe typically exists as single cells or in pairs, reflecting its diverse cellular arrangement. As a chemoorganotroph, [C. saccharolyticum WM1] utilizes organic compounds as its primary energy source, enabling it to adapt to various habitats where organic matter is present.↵↵The optimal growth temperature for this organism is around 37.0°C, which aligns with the conditions found in many natural and engineered environments, including those rich in decomposing organic materials. Its ability to sporulate allows it to endure unfavorable conditions, thereby enhancing its survival in fluctuating environments.↵↵The ecological significance of [C. saccharolyticum WM1] may lie in its role in the degradation of complex carbohydrates in anaerobic environments, contributing to the cycling of nutrients in soil and sediment ecosystems. This trait underscores its potential importance in biogeochemical processes, particularly in the degradation of plant biomass, which can impact soil health and fertility." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Lacrimispora saccharolytica Negative Rod Yes 1 1 Anaerobic 37 Chemoorganotroph Mesophilic Multiple Free living Singles-Pairs Sporulating 610130 NC_014376.1 Bac0003720 Desulfosoma caldarium str. DSM 22027 "Desulfosoma caldarium str. DSM 22027 is a Gram-negative, rod-shaped bacterium that thrives under strictly anaerobic conditions, with an optimal growth temperature of 45.0 °C. This organism is non-spore-forming, which suggests a reliance on stable environmental conditions for survival and growth. As a member of the Desulfosoma genus, it is likely involved in sulfate reduction processes, contributing to biogeochemical cycling in its native habitat. ↵↵The specific temperature preference of 45.0 °C indicates that D. caldarium str. DSM 22027 is adapted to thermophilic environments, which are often characterized by high temperatures and low oxygen availability. This adaptation may enhance its metabolic efficiency in such niches, potentially allowing it to outcompete other microorganisms under similar conditions. ↵↵Understanding the physiology and ecological roles of D. caldarium str. DSM 22027 may provide insights into the dynamics of microbial communities in extreme environments, particularly in hot springs or deep-sea hydrothermal vents where such thermophilic sulfate-reducing bacteria are typically found. Further exploration of its metabolic pathways could also shed light on its contributions to sulfur cycling and energy flow in anaerobic ecosystems." Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfosoma Desulfosoma caldarium Gram-negative rod anaerobic 45 thermophilic non-spore-forming 610254 RJVA00000000.1 Bac0003721 Helicobacter bilis ATCC 43879 "*Helicobacter bilis ATCC 43879* is a Gram-negative, spiral-shaped bacterium that thrives at mesophilic temperatures, categorizing it as a mesophilic microbe. It is a chemoheterotroph, deriving its energy from the consumption of organic compounds, and has been identified as a microaerophile, requiring lower levels of oxygen for optimal growth compared to atmospheric levels. This organism is primarily associated with the gastrointestinal tract of various mammals, particularly rodents, where it can inhabit both the stomach and intestines. Its spiral shape and flagella facilitate mobility in the viscous environment of the gut, allowing it to effectively colonize and establish itself within the host's mucosal lining. As a chemoheterotroph, *H. bilis* utilizes host-derived organic substrates, which it metabolizes for energy and growth, potentially influencing the host's digestive processes and microbiome composition. The microaerophilic nature of *H. bilis* means that it thrives in environments with reduced oxygen tension, characteristic of the gastrointestinal tract, where oxygen availability is limited due to the dense microbial community. This adaptation not only aids in its survival but also can impact the oxygen levels and metabolic activities of other gut microbiota. *Helicobacter bilis* has been studied for its role in gastrointestinal diseases, including its potential involvement in conditions such as gastritis and enteritis. Unlike its cousin, *Helicobacter pylori*, which is widely known for causing gastric ulcers and cancer in humans, *H. bilis* demonstrates unique pathogenicity in certain animal models. There is ongoing research to explore its interactions within the gut microbiome, which may lead to insights into microbial ecology and potential therapeutic strategies for gut-related diseases. Additionally, its relationship with its host's immune response presents a fascinating area for further study, particularly in understanding how microbial communities affect health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter bilis Negative Microaerophile 613026 ACDN00000000.2 Bac0003722 Ureibacillus xyleni Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Ureibacillus Ureibacillus xyleni 614648 OBMQ00000000.1 Bac0003723 Levilactobacillus paucivorans Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus paucivorans 616990 JQCA00000000.1 Bac0003724 Arenibacter algicola Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Arenibacter Arenibacter algicola 616991 NZ_CP022516.1 Bac0003725 Neptunomonas antarctica "Neptunomonas antarctica is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities. This microbe thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments. Such characteristics suggest that N. antarctica is well-adapted to polar and subpolar habitats, where low temperatures and varying oxygen levels are prevalent.↵↵As a facultative aerobe/anaerobe, N. antarctica can utilize oxygen when available, but it is also capable of fermentative metabolism in its absence. This metabolic flexibility may enable it to exploit a range of ecological niches, particularly in marine environments where oxygen concentrations can fluctuate significantly.↵↵N. antarctica's adaptation to cold environments and its versatile metabolic strategies highlight its potential role in biogeochemical cycles within polar ecosystems. Its ability to thrive in lower temperatures may contribute to nutrient cycling and organic matter decomposition in these largely unstudied habitats. Understanding the ecological role of N. antarctica could provide insights into microbial life in extreme conditions and its contributions to ecosystem dynamics in the Antarctic region." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptunomonas Neptunomonas antarctica Gram-negative rod facultative aerobe/anaerobe 16 psychrotolerant 619304 FTOE00000000.1 Bac0003726 Prevotella sp. oral taxon 472 str. F0295 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 472 619693 ACZS00000000.1 Bac0003727 Soonwooa buanensis "Soonwooa buanensis is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0°C. The Gram-negative classification indicates that S. buanensis possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. The rod shape is a common morphological trait among many bacteria, influencing their motility and ability to form biofilms in various environments.↵↵The identification of S. buanensis contributes to our understanding of microbial diversity, particularly in aerobic habitats where temperature and oxygen availability are critical for microbial activity. Its optimal growth temperature of 29.0°C suggests that it is well adapted to environments that maintain moderate thermal conditions, potentially influencing its distribution and ecological roles.↵↵The aerobic nature of S. buanensis implies a reliance on oxygen for metabolic processes, which may play a significant role in nutrient cycling within its habitat. While specific ecological niches are not detailed, the traits of S. buanensis suggest that it may inhabit environments such as soils or aquatic systems where oxygen is readily available, contributing to the breakdown of organic matter and the cycling of nutrients. Understanding the metabolic capabilities of S. buanensis could provide insights into its role within these ecosystems, highlighting its potential importance in maintaining ecological balance through aerobic decomposition processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Soonwooa Soonwooa buanensis Gram-negative rod non-motile aerobic 29 mesophilic 619805 FUYZ00000000.1 Bac0003728 Fusobacterium periodonticum D10 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum 620833 ACIF00000000.1 Bac0003729 Sphingomonas melonis TY Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas melonis 621456 LQCK00000000.2 Bac0003730 Roseburia inulinivorans DSM 16841 "Roseburia inulinivorans DSM 16841 is a Gram-positive, rod-shaped bacterium classified as an obligate anaerobe. This organism thrives optimally at mesophilic temperatures, typically ranging between 30°C to 37°C, making it well-suited for the human gut environment. As a heterotroph, Roseburia inulinivorans relies on organic compounds for its energy and growth, specifically fermenting dietary fibers such as inulin, a polysaccharide commonly found in many plants. This bacterium is primarily isolated from the human gastrointestinal tract, where it plays a pivotal role in the fermentation of dietary fibers into short-chain fatty acids (SCFAs), particularly butyrate. Butyrate is significant for colonic health, serving as an energy source for colonocytes and contributing to the maintenance of gut integrity and function. Roseburia inulinivorans can also be found in the fecal microbiota of various populations, highlighting its importance in human health and the gut microbiome's diversity. With its ability to process inulin, Roseburia inulinivorans is often associated with the consumption of prebiotic-rich foods, such as artichokes, garlic, and onions. Its proliferation in the gut is linked to various health benefits, including potential anti-inflammatory properties and modulation of immune responses. Moreover, this microbe's presence is inversely correlated with conditions such as obesity and type 2 diabetes, indicating its role in metabolic health. Overall, Roseburia inulinivorans serves as a crucial player in the gut ecosystem, illustrating the intricate relationship between diet, microbial diversity, and human health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia inulinivorans Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 622312 ACFY00000000.1 Bac0003731 Parapedobacter composti "Parapedobacter composti is a Gram-negative, rod-shaped bacterium that has been characterized as non-spore-forming and demonstrates aerobic metabolic capabilities. Optimal growth conditions for this organism occur at a temperature of approximately 29.0°C, suggesting a preference for mesophilic environments. The Gram-negative nature of P. composti indicates the presence of a double membrane structure, which may play a crucial role in its interactions with the surrounding environment and influence its nutrient uptake mechanisms.↵↵The non-spore-forming trait of P. composti suggests a reliance on favorable environmental conditions for survival rather than the ability to withstand extreme stresses typically associated with sporulation. This characteristic may influence its ecological niches, as it may be less resilient to harsh conditions compared to spore-forming bacteria. ↵↵Given its aerobic requirement, P. composti likely plays a role in biogeochemical processes where oxygen is available, potentially contributing to organic matter decomposition and nutrient cycling in its habitat. The specific temperature preference may position this microbe within certain ecological frameworks, such as composting systems or organic-rich environments where temperatures remain stable. The ability of P. composti to thrive in mesophilic and oxygen-rich conditions highlights its potential significance in microbial communities involved in organic matter degradation and nutrient recycling, emphasizing the interconnectedness of microbial life and ecosystem health." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Parapedobacter Parapedobacter composti Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 623281 FOLL00000000.1 Bac0003732 Pseudidiomarina aestuarii str. KYW314 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina aestuarii 624146 PIPR00000000.1 Bac0003733 Burkholderia glumae BGR1 "Burkholderia glumae causes grain and seedling rot in rice and bacterial wilt in many field crops; bacterial rice grain rot is becoming prevalent in many rice-growing countries, including China, Japan, Vietnam, the Philippines, India and the USA. The bacterium infects rice panicles at the flowering stage and causes serious yield losses when temperature and humidity are favorable for successful infection and in vivo proliferation. The bacterium produces yellow pigments, toxoflavin, reumycin, and fervenulin. Among these, toxoflavin is the most critical virulence factor of the bacterium. Strain BGR1 was isolated in Korea (adapted from PMID 19329631). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia glumae BGR1 Negative Rod Yes 1 2 Facultative anaerobe 30 Chemoheterotroph Mesophilic Soil Free living Nonsporulating No 626418 NC_012721.2 Bac0003734 Alloprevotella tannerae ATCC 51259 "Alloprevotella tannerae ATCC 51259 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions. This microbe prefers mesophilic temperatures, typically flourishing at optimal ranges around 30–37°C. It is classified as a chemoheterotroph, deriving carbon and energy from organic compounds, which it metabolizes in oxygen-free environments. Alloprevotella tannerae is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, making it a key player in various anaerobic ecosystems, particularly within the human microbiome. Found predominantly in the gastrointestinal tract, Alloprevotella tannerae also inhabits oral cavities and, to a lesser extent, is present in the respiratory tract and urogenital system of humans and other mammals. This distribution highlights its role in both health and disease, as it contributes to the complex microbial communities that maintain gut homeostasis. By breaking down complex carbohydrates, it aids in digestion and nutrient absorption, showcasing an essential function within the microbiota. Recent studies suggest that Alloprevotella tannerae may be associated with various health conditions, including inflammatory bowel disease and obesity. Its presence and abundance in the gut microbiome can influence host metabolism and immune responses, indicating its potential impact on overall health. The bacterium's ability to ferment dietary fibers into short-chain fatty acids also positions it as a significant contributor to gut health, providing energy to colonocytes and helping to maintain gut barrier integrity. Understanding the role of Alloprevotella tannerae could lead to novel therapeutic approaches for managing gut-related ailments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Alloprevotella Alloprevotella tannerae Negative Anaerobe 626522 ACIJ00000000.2 Bac0003735 Marinobacter nanhaiticus D15-8W Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter nanhaiticus 626887 APLQ00000000.1 Bac0003736 Bacteroides clarus "Bacteroides clarus is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in all body sites of various species, including the human gut, mouth, and skin, and is an obligate anaerobe. The gram-negative characteristic is due to the composition of its cell wall, which consists of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients from its surroundings. As a mesophilic microbe, Bacteroides clarus grows best in temperatures between 20-45°C, making it well-suited to the human body's normal temperature range.As a chemoheterotroph, Bacteroides clarus relies on chemical reactions to produce energy and requires organic compounds as a source of carbon and energy. This is in contrast to autotrophic microbes, which can produce their own food using light or chemical energy. The presence of Bacteroides clarus in all body sites is a testament to its ability to adapt and thrive in diverse environments. Its obligate anaerobic nature means that it cannot survive in the presence of oxygen, and therefore, is typically found in areas with low oxygen levels, such as the gut. ↵Bacteroides clarus plays a crucial role in the breakdown and utilization of complex polysaccharides in the human gut, contributing to the maintenance of a healthy gut microbiome. Its unique characteristics and abilities have led researchers to investigate its potential as a probiotic agent, with studies exploring its use in the prevention and treatment of various diseases, including inflammatory bowel disease and obesity." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides clarus Negative Anaerobe 626929 NFII00000000.1 Bac0003737 Bacteroides oleiciplenus "Bacteroides oleiciplenus is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites, including the gut, skin, and mucous membranes, across different species. As a Chemoheterotroph, Bacteroides oleiciplenus relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth and survival. Its rod-shaped morphology allows it to adapt to diverse environments, from the digestive tract to the skin's surface. As an Obligate Anaerobe, Bacteroides oleiciplenus requires the absence of oxygen to grow, which is why it typically inhabits areas with low oxygen levels, such as the intestinal tract. The mesophilic temperature preference of Bacteroides oleiciplenus enables it to thrive in temperatures ranging from 20°C to 45°C, making it well-suited to the human body's average temperature. Its ability to colonize various body sites is attributed to its capacity to adhere to and interact with host cells, facilitating its persistence and survival. The Gram-negative cell wall of Bacteroides oleiciplenus provides it with a degree of resistance to environmental stresses and host immune responses. Bacteroides oleiciplenus plays a significant role in the degradation of complex lipids, contributing to the formation of short-chain fatty acids that serve as energy sources for the host. Its presence in the gut microbiome has been linked to the regulation of lipid metabolism and the maintenance of a healthy balance of microbial communities. The unique ability of Bacteroides oleiciplenus to hydrolyze and ferment oleic acid, a monounsaturated fatty acid, has implications for our understanding of lipid metabolism and its impact on human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides oleiciplenus Negative Anaerobe 626931 MNQQ00000000.1 Bac0003738 Alistipes indistinctus "Alistipes indistinctus is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the gut, skin, and respiratory tract, across different species. As an Obligate Anaerobe, Alistipes indistinctus requires the absence of oxygen to grow and survive. The Gram-negative characteristic indicates that the bacterium has a thin peptidoglycan layer in its cell wall, making it more resistant to certain antibiotics. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the absorption of nutrients from its environment. As a mesophilic microorganism, Alistipes indistinctus grows best in moderate temperatures, typically between 20-45°C, which is ideal for its survival in the human body.As a Chemoheterotroph, Alistipes indistinctus relies on chemical compounds for energy and organic compounds for carbon, breaking down complex molecules into simpler ones to sustain its growth. The bacterium's presence in various body sites, including the gut, skin, and respiratory tract, suggests its ability to adapt to different environments and host-microbe interactions. The absence of oxygen is crucial for its growth, as it is unable to survive in aerobic conditions. Alistipes indistinctus plays a significant role in the human microbiome, particularly in the gut, where it contributes to the breakdown of complex carbohydrates and produces short-chain fatty acids, which can influence host health and disease. Research has shown that an imbalance of Alistipes indistinctus in the gut microbiome has been linked to various diseases, including inflammatory bowel disease and obesity, highlighting the importance of this microbe in maintaining a healthy balance in the human body." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes indistinctus Negative Anaerobe 626932 QRXW00000000.1 Bac0003739 Christensenella minuta str. DSM 22607 "Christensenella minuta str. DSM 22607 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is non-spore-forming, which suggests it relies on other mechanisms for survival in fluctuating environments rather than sporulation. Its anaerobic nature indicates that C. minuta plays a role in environments where oxygen is limited, potentially contributing to anaerobic fermentation processes. ↵↵The ability to grow optimally at human body temperature aligns with its potential association with the human microbiome, where it may participate in complex microbial interactions. The specific metabolic pathways and contributions of C. minuta to gut health or disease states remain an area of interest, particularly given the increasing recognition of the role of gut microbiota in overall health. ↵↵Understanding the characteristics and behavior of Christensenella minuta str. DSM 22607 can enhance our knowledge of microbial dynamics in anaerobic environments and may provide insights into its functional role within the human microbiome." Bacillati Bacillota Clostridia Christensenellales Christensenellaceae Christensenella Christensenella minuta Gram-negative rod non-motile anaerobic 37 mesophilic non-spore-forming 626937 LSZW00000000.1 Bac0003740 Phascolarctobacterium succinatutens YIT 12067 "Phascolarctobacterium succinatutens YIT 12067 is a gram-negative, rod-shaped microbe that is mesophilic, thriving in moderate temperatures, and is a chemoheterotroph, requiring organic compounds for energy and carbon sources, which can be found in various body sites of multiple species, including the gastrointestinal tracts of animals and humans. As a chemoheterotroph, Phascolarctobacterium succinatutens YIT 12067 relies on the breakdown of complex organic molecules to sustain its metabolic processes. This microbe is an obligate anaerobe, strictly requiring the absence of oxygen to survive and grow, which is reflected in its optimal growth conditions. The rod-shaped morphology of Phascolarctobacterium succinatutens YIT 12067 is typical of many bacterial species, allowing for efficient nutrient uptake and cellular division. Its mesophilic nature enables it to inhabit a wide range of environments, from the human gut to various animal hosts. As a chemoheterotroph, Phascolarctobacterium succinatutens YIT 12067 plays a crucial role in the degradation of organic matter, contributing to the balance of ecosystems. The presence of Phascolarctobacterium succinatutens YIT 12067 has been linked to the production of short-chain fatty acids, which can have beneficial effects on the host's health, such as regulating inflammation and improving immune function. Notably, Phascolarctobacterium succinatutens YIT 12067 has been identified as a key player in the succinate-producing microbial community, highlighting its significance in the microbial food chain and its potential applications in biotechnology and medicine." Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium succinatutens Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 626939 AEVN00000000.1 Bac0003741 Phascolarctobacterium succinatutens "Phascolarctobacterium succinatutens is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites of its host, including the gastrointestinal tract, of all possible species, particularly in the gut of koalas and other marsupials, and is an Obligate Anaerobe. The Gram-negative characteristic indicates that the microbe's cell wall contains a thin peptidoglycan layer, making it more susceptible to certain antibiotics. Its rod-shaped morphology allows for efficient movement and colonization in its host environment. As a mesophile, Phascolarctobacterium succinatutens grows best in moderate temperatures, typically between 20-45°C, which is ideal for its habitat in the gut of warm-blooded animals.As a Chemoheterotroph, Phascolarctobacterium succinatutens relies on chemical reactions to produce energy and requires organic compounds as a source of carbon and energy. This is evident in its ability to ferment various carbohydrates and produce short-chain fatty acids, such as succinate, which is reflected in its species name. The microbe's presence in various body sites of its host suggests a symbiotic relationship, where it contributes to the host's digestive processes and receives nutrients in return. As an Obligate Anaerobe, Phascolarctobacterium succinatutens is strictly dependent on anaerobic conditions for growth and survival, which is consistent with its habitat in the oxygen-free environment of the gut. ↵Phascolarctobacterium succinatutens plays a crucial role in the degradation of complex organic matter in the gut of its host, and its unique metabolic capabilities have led to its exploration in biotechnological applications, such as the production of biofuels and other valuable chemicals." Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium succinatutens Positive No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 626940 MNTG00000000.1 Bac0003742 Paralcaligenes ureilyticus str. DSM 24591 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Paralcaligenes Paralcaligenes ureilyticus 627131 SMAJ00000000.1 Bac0003743 Sphingobium sp. SYK-6 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. SYK-6 627192 NC_015974.1 Bac0003744 Pseudomonas amygdali pv. mori str. 301020 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 629261 AEAG00000000.1 Bac0003745 Pseudomonas syringae pv. maculicola str. ES4326 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 629265 NZ_CP047260.1 Bac0003746 Pseudomonas amygdali pv. lachrymans str. M302278 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 629267 AEAM00000000.1 Bac0003747 Microlunatus soli "Microlunatus soli is a Gram-positive, spherical bacterium that exhibits aerobic metabolism. This organism is characterized by its distinct coccoid shape, which is typical of many Gram-positive bacteria. The aerobic nature of Microlunatus soli indicates its reliance on oxygen for growth and energy production, positioning it within environments where oxygen is readily available.↵↵The ability to thrive in aerobic conditions may suggest that Microlunatus soli plays a role in various biogeochemical processes, particularly in soil ecosystems where oxygen levels can fluctuate based on microbial activity and environmental conditions. Furthermore, its classification as a Gram-positive bacterium implies a robust cell wall structure, which may offer advantages in competing with other microbial flora in its habitat.↵↵While the specifics of its ecological interactions remain to be fully elucidated, the presence of Microlunatus soli in soil environments may contribute to nutrient cycling and the maintenance of microbial diversity. The unique combination of its Gram-positive characteristics and aerobic lifestyle might also indicate potential applications in biotechnology, particularly in bioremediation efforts where aerobic processes are essential for the degradation of pollutants. Overall, Microlunatus soli exemplifies the intricate connections between microbial physiology and ecological function within soil ecosystems." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus soli Gram-positive sphere aerobic 630515 NZ_LT629772.1 Bac0003748 Caldicellulosiruptor hydrothermalis 108 "Cellulolytic capability is widely distributed across the domain bacteria and extremely thermophilic cellulose-degrading microorganisms are of particular fundamental and biotechnological interest owing to the presence of highly thermostable enzymes. Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) is a strictly anaerobic, cellulolytic, non-spore-forming, extremely thermophilic, Gram-positive bacterium isolated from a terrestrial neutral geothermal spring in the southern region of Kamchatka (Far East, Russia). Cells are short, straight rods (3-3.2 x 0.5-0.7 mm) with flagella. Temperature range for growth is between 70-78 degrees Celsius, with optimum growth at 79 degrees Celsius. The pH range for growth is between 6.0-8.0, with optimum growth at pH 7.0. It is a chemo-organoheterotroph which is capable of fermenting a wide spectrum of carbohydrates (cellulose, starch, xylan, dextran, pectin, cellobiose, glucose, fructose, sucrose, xylose, maltose, galactose, lactose, arabinose, mannitol and yeast extract). It does not grow with pyruvate, chitin, raffinose, trehalose, ribose or peptone. It possesses an inverted region that could exist outside of the chromosome. With optimal growth temperatures ranging from 70-78 degrees Celsius, the genus Caldicellulosiruptor contains the most thermophilic microorganisms capable of biological cellulose hydrolysis known. (Adapted from PMID: 21216991 and 18523201). (EBI Integr8)" Bacillati Bacillota Clostridia Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor hydrothermalis 108 Positive Bacilli No 1 1 Anaerobic 65 heterotroph; organotroph; chemotroph Hyperthermophilic Specialized Free living Pairs- Singles Nonsporulating No 632292 NC_014652.1 Bac0003749 Caldicellulosiruptor acetigenus I77R1B Bacillati Bacillota Clostridia Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor acetigenus anaerobic 632335 NC_014721.1 Bac0003750 Rhodococcus opacus B4 "Rhodococci are aerobic, Gram positive actinomycetes of high G+C content, capable of morphological differentiation in response to their environment (e.g., cocci or filaments). These widely occurring organisms are of considerable environmental and biotechnological importance due to their broad metabolic diversity and array of unique enzymatic capabilities. These are of interest to the pharmaceutical, environmental, chemical and energy sectors. Specific applications include the desulphurization of fossil fuels and the industrial production of acrylamide. Rhodococci are well suited for bioremediation due to their capacity for long term survival in soil, their exceptional ability to degrade hydrophobic pollutants even in the presence of more readily assimilable carbon sources, and their ability to accumulate high levels of heavy metals.Strain B4 was isolated from a soil sample taken from the roadside in Hiroshima, Japan. It is a benzene-tolerant, Gram-postitive, non-motile, strictly aerobic rod, able to use many organic compound as its sole source of carbon and energy (adapted from PubMed 16233805). (HAMAP: RHOOB)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus B4 Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments Nonsporulating No 632772 NC_012522.1 Bac0003751 Thermosphaera aggregans DSM 11486 "Thermosphaera aggregans (strain DSM 11486 / M11TL) is a strictly anaerobic, hyperthermophile archaeum isolated from water and sediment samples of a terrestrial circumneutral hot solfataric spring (""Obsidian Pool"") located in the Mud Volcano area of the Yellowstone National Park, Wyoming. It is restricted to hot, pH neutral, terrestrial springs. T. aggregans is a regular coccus that preferentially grows in grape-like aggregates consisting of five to several hundred individuals. It grows optimally at 85 degrees Celsius, and the temperature range for growth is 67 to 90 degrees Celsius. The pH range for growth is 5.0-7.0 with an optimum at pH 6.5. T. aggregans grows optimally in the absence of exogenous NaCl, but can be adapted to salt concentrations of up to 0.7%. Upon growth on yeast extract and peptone, the fermentation products acetate, isovalerate, CO(2) and H(2) are identified, but no growth on meat extract, amylose, glycogen, cellulose, cellobiose, maltose, raffinose, pyruvate and acetate is observed. Growth is inhibited by sulfur and H(2). Interestingly, an inhibiting effect in cultures of T. aggregans is not observed, if growth media are supplemented with the sulfur compounds sulfide, sulfite or thiosulfate, so that this effect seems to be restricted to elemental sulfur. The inhibiting effect of H(2) on growth is reversible and can be explained by a product inhibition of sensitive hydrogenases, which may be required for the disposal of reducing equivalents as hydrogen during fermentation. (Adapted from : http://standardsingenomics.org/index.php/sigen/article/view/sigs.821804/204). (HAMAP: THEAM)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Thermosphaera Thermosphaera aggregans DSM 11486 Cocci Yes 1 1 Anaerobic Heterotroph Hyperthermophilic Hot spring- Solfataric field Free living Chains-Pairs-Singles Nonsporulating No 633148 NC_014160.1 Bac0003752 Pseudomonas sp. 1-7 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 1-7 633150 JPRQ00000000.1 Bac0003753 Roseivivax lentus "Roseivivax lentus is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0 °C and exhibits an aerobic metabolism. This organism has been characterized by its distinctive morphological and physiological traits, which contribute to its survival in specific environmental niches. ↵↵As a member of the diverse group of aerobic bacteria, R. lentus likely engages in metabolic processes that rely on the presence of oxygen, which may influence its habitat preferences and interactions with other microorganisms. Its rod shape is typical among various bacterial taxa and may facilitate motility and nutrient uptake in its environment. ↵↵Understanding the optimal growth temperature of R. lentus at 29.0 °C suggests its potential adaptation to moderately warm habitats, possibly including marine environments where such temperatures are prevalent. The combination of its Gram-negative cell wall structure and aerobic lifestyle may also confer specific ecological advantages, such as resistance to certain environmental stresses and interactions with other microbial communities.↵↵Overall, the traits of Roseivivax lentus exemplify the intricate adaptations of bacteria to their ecological niches, highlighting the significance of temperature and oxygen availability in shaping microbial diversity and function in aquatic ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseivivax Roseivivax lentus Gram-negative rod non-motile aerobic 29 mesophilic 633194 FTOQ00000000.1 Bac0003754 Nonomuraea jiangxiensis Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea jiangxiensis non-motile 29 mesophilic spore-forming 633440 FNDJ00000000.1 Bac0003755 Lactobacillus johnsonii FI9785 "Lactobacilli produce lactic acid and are used for many different things, including yogurt production and the maintenance of healthy intestinal microflora. Lactobacilli are commonly associated with the gastrointestinal tract of humans. The genome of the Lactobacillus plantarum has been sequenced and the genomes of several other Lactobacilli are underway. The goal of researchers is to better understand the roles, capabilities, and interactions of Lactobacilli.The genome of Lactobacillus plantarum has been sequenced. The genome is 3,308,274 bp long with 3,052 open-reading frames, and a G+C content of 44.5%. L. plantarum occupies many different niches in the environment including the human gastrointestinal tract. L. plantarum is very ecologically flexible as is reflected in the fact that it has one of the largest genomes of any of the lactic acid bacteria.The genome of Lactobacillus bulgaricus, which is currently in progress, is about 2.3 Mbp long with a G+C content of 50%. L. bulgaricus is one of the two bacteria required for the production of fermented milk and yogurt. The complete sequence of this genome will provide better understanding and control of this bacterium in the fermentation process.Lactobacilli are rod-shaped, Gram-positive, fermentative, organotrophs. They are usually straight, although they can form spiral or coccobacillary forms under certain conditions. They are often found in pairs or chains of varying length. Lactobacilli are classified as lactic acid bacteria, and derive almost all of their energy from the conversion of glucose to lactate during homolactic fermentation. In this process 85-90% of the sugar utilized is converted to lactic acid. They generate ATP by nonoxidative substrate-level phosphorylation.Lactobacilli are commonly associated with plant herbage. They have a generation time ranging from 25 minutes to several hundred minutes, and grow optimally between the temperatures of 30 and 40 degrees Celsius, although thermophilic strains can be comfortable at temperatures as high as 45 degrees Celsius. They are also commonly associated with the gastrointestinal tract of animals and humans. As natural GI microflora they are believed to perform several beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of healthy intestinal microflora. Lactobacillus gasseri appears to be the main species of lactobacilli that inhabits the human gastrointestinal tract. (From http://microbewiki.kenyon.edu/index.php/Lactobacillus) (MicrobeWiki: Lactobacillus)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii FI9785 Positive Rod No 1 1 Microaerophilic 25 Mesophilic HostAssociated Free living Homo sapiens Chains No 633699 NC_013505.1 Bac0003756 Rhodothermus profundi "Rhodothermus profundi is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and a temperature optimum of 45.0°C. This thermophilic microbe thrives in high-temperature environments, which suggests an adaptation to extreme habitats, such as those found in geothermal areas or deep-sea hydrothermal vents. ↵↵As a non-spore-forming organism, R. profundi relies on its metabolic capabilities rather than sporulation for survival in fluctuating environmental conditions. The Gram-negative cell wall structure of R. profundi may contribute to its resilience in nutrient-limited environments, providing a protective barrier while facilitating the uptake of essential nutrients. ↵↵Understanding the physiological traits of R. profundi can offer insights into microbial life in extreme conditions and its potential applications in biotechnology, particularly in processes that require high temperatures. The unique adaptations of this organism may also provide clues to the evolutionary mechanisms that allow life to thrive in extreme environments, highlighting the intricate relationships between temperature, oxygen availability, and microbial survival strategies." Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus profundi Gram-negative rod non-motile aerobic 45 thermophilic non-spore-forming 633813 FRAU00000000.1 Bac0003757 Pseudofulvimonas gallinarii str. DSM 21944 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Pseudofulvimonas Pseudofulvimonas gallinarii 634155 MWQP00000000.1 Bac0003758 Komagataeibacter medellinensis NBRC 3288 "**Komagataeibacter medellinensis** NBRC 3288 is a Gram-negative, rod-shaped bacterium notable for its potential applications in biotechnology and material science. As a member of the genus Komagataeibacter, it is characterized by its ability to produce cellulose, a trait that facilitates its use in various industrial processes, including the production of biofilms and biopolymers. The Gram-negative nature of K. medellinensis indicates a thinner peptidoglycan layer and the presence of an outer membrane, which can influence its interaction with other microbial species and its resilience in diverse environments.↵↵The rod shape of K. medellinensis is typical of many bacteria within its genus and contributes to its motility and ability to colonize surfaces. This morphological characteristic may also play a role in its metabolic processes, as rod-shaped bacteria often exhibit higher surface area-to-volume ratios compared to coccoid forms, potentially enhancing nutrient uptake.↵↵While the ecological niche of K. medellinensis remains to be fully elucidated, its cellulose-producing capability positions it as a crucial player in carbon cycling within its habitat, potentially influencing soil structure and health. The study of K. medellinensis could provide deeper insights into the roles of cellulose-producing microbes in natural ecosystems and their applications in sustainable technologies. This unique combination of traits underscores the importance of further research into the functional capabilities and environmental interactions of this bacterium." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter medellinensis Gram-negative rod non-motile 634177 NC_016030.1 Bac0003759 Rhizobium vallis str. CCBAU 65647 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium vallis 634290 RJTH00000000.1 Bac0003760 Acetobacter pasteurianus IFO 3283-01 "Acetobacter pasteurianus is an acetic acid bacterium traditionally used in the production of fermented food; strain NBRC 3283 (formerly known as IFO 3283) is used in vinegar production in Japan. Acetic acid bacteria are subject to physiological and genetic instability. In order to explore this instability 8 subisolates of NBRC were completely sequenced; only one isolate is represented here (strain IFO 3283-01).Over 280 genes, corresponding to 9% of the genome, were found to encode transposases in this isolate, with 3 single nucleotide polymorphisms and 5 transposon insertions in 32 different isolates from a multi-phenotype cell complex, indicating the propensity for genetic instability (adapted from PubMed 19638423). (HAMAP: ACEP3)" Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus IFO 3283-01 Negative Bacilli No 1 2 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Symbiotic Nonsporulating No 634452 NC_013209.1 Bac0003761 Erwinia billingiae Eb661 "The genus Erwinia currently contains both plant pathogenic and nonpathogenic bacteria. The nonpathogenic Erwinia billingiae strain Eb661 is an epiphyte isolated from a pear tree in England in 1959 and is also known as LMG 2613. Epiphytic Erwinia strains can compete with growth and distribution of E. amylovora on flowers and may be applied as antagonists for control of fire blight, a devastating bacterial infection of apple, pear and related trees. Comparisons of the pathogenic Erwinia pyrifoliae strain Ep1/96 with this and another non pathogen Erwinia tasmaniensis Et1/99 indicates E.billingiae has just over 2000 unique genes compared to 600-900 for each of the other species. Some of these components probably represent factors to describe pathogenic and non-pathogenic Erwinia species (adapted from PMID 20565991). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia billingiae 661 Negative Rod Yes 1 2 Facultative Mesophilic Free living Nonsporulating No 634500 NC_014304.1 Bac0003762 Edwardsiella ictaluri 93-146 "The disease caused by Edwardsiella ictaluri, enteric septicemia of catfish (ESC), is the most economically important disease of farm-raised channel catfish, which is the largest aquaculture industry in the United States. Functional predictions for the ORFs indicate that the physiology of E. ictaluri is similar in many respects to other members of the Enterobacteriaceae, including Escherichia coli O157:H7, Salmonella enterica, Yersinia pestis, and Erwinia carotovora. However, E. ictaluri does have some unique features; for example, its genome contains a higher number of genes involved in DNA recombination, replication, and repair, protein stabilization and two-component regulatory systems. This may indicate that E. ictaluri is adapted to survival in more stressful or diverse environments than other Enterobacteriaceae species. The genome has 203 transposable elements, which is considerably higher than the other four species. This is surprising because E. ictaluri only has one serovar and is generally considered to be phenotypically homogenous (adapted from http://www.miangel.msstate.edu/research/eigenome.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella ictaluri 93-146 Negative Rod No 1 2 Facultative anaerobe Mesophilic Aquatic Free living Nonsporulating No 634503 NC_012779.2 Bac0003763 Bartonella grahamii as4aup "Bartonella grahamii (strain as4aup) is Gram-negative bacterium isolated from a wood mouse (Apodemus sylvaticus) in central Sweden. B. grahamii is present in several species of mice and voles and is likely to be one of the most prevalent Bartonella species in wild rodents. It is transmitted by the rodent flea and is involved in two reported cases of human disease. Through its broad host range, B. grahamii has access to a large gene pool. The rodent-associated Bartonella species have higher copy numbers of genes for putative host-adaptability factors than the related human-specific pathogens. Many of these genes are clustered and located in a highly dynamic region (HDR) of the chromosome containing many gene clusters for secretion systems. A novel gene transfer agent packages the bacterial genome, with an over-representation of the amplified DNA, in 14 kb pieces. Consequently, the HDR is extensively amplified and packaged into bacteriophage particles. This is the first observation associating the products of run-off replication with a gene transfer agent, and the first demonstration of targeted packaging of a portion of the bacterial chromosome into viral particles. The combination of these two systems promotes diversification and rapid spread of selectively favored host-adaptability genes within and among Bartonella populations, facilitating host shifts. Thus the genome sequence of B. grahamii has been sequenced to learn more about the mechanisms and selective forces driving run-off replication and the DNA content of bacteriophage particles. (Adaptated from PMID: 19578403). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella grahamii as4aup Negative Rod Yes 1 2 Aerobic 35 Mesophilic HostAssociated Symbiotic Apodemus sylvaticus- Homo sapiens Yes 634504 NC_012847.1 Bac0003764 Chitinophaga eiseniae Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga eiseniae 634771 FUWZ00000000.1 Bac0003765 Thermincola carboxydiphila JR Bacillati Bacillota Clostridia Eubacteriales Thermincolaceae Thermincola Thermincola carboxydiphila 635013 NC_014152.1 Bac0003766 Bacillus cereus biovar anthracis str. CI "Bacillus cereus is a Gram-positive, spore-forming bacterium of the B.cereus group. It is closely related to Bacillus anthracis and Bacillus thuringiensis. Bacillus cereus is a ubiquitous soil organism and opportunistic human pathogen most commonly associated with food poisoning, causing diarrheic (late onset) or emetic (quick onset) outbreaks. Strain 03BB102 was cultured from the blood of a 39 year old San Antonio, Texas welder who died as a result of a severe pneumonia thought to be caused by this microbe. Unlike B. anthracis, the isolate is hemolytic, motile and resistant to gamma phage. However, it is positive for a DFA-based cell wall test for B. anthracis, and it has all or most of the pXO1 pathogenicity island sequences including the sequences for pag, cya and lef. It is negative for the B. anthracis capsule formation genes but still has a capsule, presumably encoded by its own capsule genes. It was not determined whether any of these genes were expressed during the infection but the severe pneumonia of which the individual died was never mistaken for an anthrax infection. The genome of Bacillus cereus 03BB102 will provide information on the potential pathogenicity and genetic variability of this organism (adapted from http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=31307). (HAMAP: BACC3)" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis CI Positive Rod Yes 1 1 Facultative 37 Chemoheterotroph Mesophilic HostAssociated Free living Homo sapiens Sporulating Yes 637380 NC_014333.1 Bac0003767 Acidithiobacillus caldus ATCC 51756 "Acidithiobacillus caldus ATCC 51756 is a Gram-negative, rod-shaped bacterium that exhibits chemolithotrophic metabolism, utilizing inorganic compounds as energy sources. This organism is nonsporulating and thrives optimally at a temperature of 30.0°C, indicating its preference for moderately warm environments. A. caldus is strictly aerobic, requiring oxygen for growth and energy production, which aligns with its chemolithotrophic lifestyle.↵↵This microbe is known to inhabit diverse environments, which can include acid mine drainage and other acidic habitats rich in sulfur compounds. Its ability to oxidize iron and sulfur compounds plays a significant role in biogeochemical cycling, particularly in sulfur metabolism. A. caldus contributes to the bioleaching process, which is utilized in the extraction of metals from ores, enhancing its potential economic importance in biotechnology and mining industries.↵↵The ecological role of Acidithiobacillus caldus ATCC 51756 extends beyond its metabolic capabilities; it serves as a keystone species in acidic ecosystems where it can influence mineral solubilization and nutrient availability. Its presence in such environments indicates a critical adaptation to low pH and high metal concentrations, allowing it to thrive where many other microorganisms cannot." Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus caldus Negative Rod No 1 Aerobic 30 Chemolithotroph Thermophilic Multiple Nonsporulating 637389 NZ_CP005986.1 Bac0003768 Kordiimonas lacus "Kordiimonas lacus is a Gram-negative, rod-shaped bacterium characterized by its optimal growth temperature of 32.0°C. This mesophilic organism thrives in moderately warm environments, which suggests a potential adaptation to specific ecological niches where such temperatures are prevalent. The Gram-negative nature of Kordiimonas lacus indicates the presence of a thin peptidoglycan layer and an outer membrane, typical of this group, which may confer advantages in certain environmental conditions, such as resistance to certain antibiotics and the ability to utilize a diverse range of substrates for growth.↵↵The rod-shaped morphology of Kordiimonas lacus is indicative of a structural configuration that may facilitate motility and nutrient uptake, potentially enhancing its survival in competitive microbial communities. This shape is common among many bacteria, pointing towards evolutionary advantages that facilitate adaptation to various environments.↵↵Understanding the growth characteristics and structural traits of Kordiimonas lacus contributes to our knowledge of microbial diversity and the functional roles that such organisms may play in their respective ecosystems. Given its optimal growth temperature, Kordiimonas lacus may occupy a unique niche within aquatic environments, potentially participating in biogeochemical cycles or interactions with other microorganisms. Further research could elucidate its ecological roles and the specific environments it inhabits, shedding light on the functional diversity within microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Kordiimonadales Kordiimonadaceae Kordiimonas Kordiimonas lacus Gram-negative rod 32 mesophilic 637679 FNAK00000000.1 Bac0003769 Helicobacter pylori v225d "Helicobacter pylori v225d is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, often found within the gastric environment of mammals. ↵↵As a spirilla, H. pylori v225d exhibits a distinctive helical form, which may contribute to its motility and ability to colonize the gastric mucosa. The microaerophilic nature of this strain indicates a requirement for reduced oxygen levels, which is consistent with its adaptation to the oxygen-poor conditions of the stomach. This adaptation is crucial for its survival and potential interactions within the host's microbiome.↵↵The specific ecological niche of H. pylori v225d suggests that it plays a role in the complex microbial community of the gastric environment, where it may impact various physiological processes in the host. Understanding the traits of this strain can provide insights into its ecological role and the dynamics of host-microbe interactions in the gastric milieu. Further investigation into its specific adaptations and interactions may reveal more about the broader implications for gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 637913 NC_017383.1 Bac0003770 Cardiobacterium hominis ATCC 15826 Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Cardiobacterium Cardiobacterium hominis 638300 ACKY00000000.1 Bac0003771 Granulicatella adiacens ATCC 49175 "Granulicatella adiacens ATCC 49175 is a gram-positive, coccoid-shaped bacterium that thrives in a mesophilic temperature range, demonstrates chemoheterotrophic metabolism, and is classified as a facultative anaerobe. This organism is primarily isolated from the human oral cavity, as well as various body sites including the respiratory tract, gastrointestinal tract, and urogenital system, indicating its versatility as a commensal microbe within different human niches. Being classified as a gram-positive organism, Granulicatella adiacens possesses a thick peptidoglycan layer, which contributes to its structural integrity and ability to withstand environmental stresses. The coccoid shape of these bacteria allows for efficient colonization and interaction with host tissues and other microbial communities. As a mesophilic organism, it flourishes at moderate temperatures, typically around 30 to 37 degrees Celsius, aligning with the human body's internal environment. The chemoheterotrophic nature of Granulicatella adiacens indicates that it relies on organic compounds for energy and carbon, often obtaining nutrients from host-derived sources. Its classification as a facultative anaerobe allows it to adapt to varying oxygen levels; it can grow in the presence or absence of oxygen, making it resilient in diverse anatomical sites where oxygen availability fluctuates. Granulicatella adiacens is notable for its role in human health, particularly in the context of opportunistic infections. It has been implicated in cases of endocarditis and other infections, particularly in immunocompromised individuals. Additionally, its ability to form biofilms contributes to its role in chronic conditions, highlighting the complex interactions it has within the human microbiome. This microbe serves not only as a commensal inhabitant but also underscores the importance of understanding the balance of microbial communities in health and disease." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Granulicatella Granulicatella adiacens Positive Facultative anaerobe 638301 ACKZ00000000.1 Bac0003772 Deferribacter desulfuricans SSM1 "Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) is a strictly anaerobic, thermophilic, sulphur-reducing Gram-negative bacterium isolated froma deep-sea hydrothermal vent chimney at the Suiyo Seamount in the Izu-Bonin Arc, Japan. D. desulfuricans grows heterotrophically using a variety of organic acids (formate, acetate, propionate, pyruvate, and lactate) with nitrate, arsenate or sulfur as a primary electron acceptor. These organic acids could be utilized as energy and carbon sources via the oxidative tricarboxylic acid (TCA) cycle. Growth is observed between 40 and 70 degrees Celsius with an optimum temperature between 60 and 65 degrees Celsius and between pH 5.0 and 7.5 with an optimum pH 6.5. Many genes encoded in the genome are most similar to the genes of sulphur- or sulphate-reducing bacterial species. The central metabolisms showed a heterotrophic lifestyle primarily driven by C1 to C3 organics, e.g. formate, acetate, and pyruvate, and also suggested that the inability of autotrophy via a reductive tricarboxylic acid cycle may be due to the lack of ATP-dependent citrate lyase. In addition, the genome encodes numerous genes for chemoreceptors, chemotaxis-like systems, and signal transduction machineries. These signalling networks may be linked to this bacterium's versatile energy metabolisms and may provide ecophysiological advantages for D. desulfuricans SSM1 thriving in the physically and chemically fluctuating environments near hydrothermal vents. (Adapted from PMID: 20189949 and 12807210). (EBI Integr8)" Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae Deferribacter Deferribacter desulfuricans SSM1 Negative Rod No 1 2 Anaerobic 60 Heterotroph Thermophilic Specialized Free living No 639282 NC_013939.1 Bac0003773 Ancylobacter novellus DSM 506 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Ancylobacter Ancylobacter novellus No 1 2 Heterotroph - Chemolithotroph Mesophilic Soil Free living 639283 NC_014217.1 Bac0003774 Paramicrobacterium humi Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Paramicrobacterium Paramicrobacterium humi 640635 FNRY00000000.1 Bac0003775 Trichococcus ilyis "Trichococcus ilyis is a rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is characterized by its ability to survive and proliferate in environments devoid of oxygen, indicating its adaptation to specific ecological niches where aerobic respiration is not feasible. The rod shape of T. ilyis likely contributes to its motility and colonization efficiency in anaerobic habitats.↵↵Understanding the physiological traits of T. ilyis may provide insights into its potential roles in various biogeochemical cycles, particularly in anaerobic environments. Given its optimal growth temperature, it may be well-suited for environments such as sediment layers or the intestinal tracts of certain organisms, where temperature and oxygen levels align with its growth requirements. Further exploration of its metabolic pathways could illuminate its contributions to organic matter degradation in these ecosystems, emphasizing its ecological significance in maintaining microbial diversity and function within anaerobic communities." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Trichococcus Trichococcus ilyis rod anaerobic 29 mesophilic 640938 FJNB00000000.1 Bac0003776 Lentzea jiangxiensis Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea jiangxiensis 25 mesophilic spore-forming 641025 FNIX00000000.1 Bac0003777 Clostridium sp. DL-VIII Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. DL-VIII 641107 NZ_CM001240.1 Bac0003778 Brucella intermedia LMG 3301 "Brucella intermedia LMG 3301 is a microaerophilic, Gram-negative bacterium, which indicates its requirement for reduced oxygen levels for optimal growth. This organism is characterized by its small, non-motile, and coccoid shape, typical of the Brucella genus. The microaerophilic nature of B. intermedia suggests that it thrives in environments where oxygen concentration is lower than that of the atmosphere, which may influence its ecological niche and interaction with other microorganisms.↵↵Brucella species, including B. intermedia, are often associated with specific hosts and environments, although detailed ecological roles for B. intermedia remain to be fully elucidated. The microaerophilic growth requirement may facilitate its survival in localized habitats such as animal tissues or within biofilms, where oxygen levels can be variable. Understanding the oxygen requirements of B. intermedia can provide insights into its potential adaptations and survival strategies in diverse environments.↵↵In summary, B. intermedia LMG 3301 exemplifies the ecological versatility of microaerophilic bacteria, possibly playing a role in nutrient cycling or symbiotic relationships in environments with limited oxygen availability. Further research is necessary to explore its specific ecological interactions and potential applications in microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella intermedia Negative Microaerophilic 641118 ACQA00000000.1 Bac0003779 Scardovia inopinata F0304 "Scardovia inopinata F0304 is a Gram-negative, coccoid-shaped bacterium that thrives in mesophilic conditions, demonstrating optimal growth at moderate temperatures typically found in the human oral cavity. This microbe functions as a chemoheterotroph, deriving its energy from organic compounds, which it metabolizes to sustain its metabolic needs. Scardovia inopinata is categorized as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, although it shows optimal growth under anaerobic conditions. This bacterium is primarily associated with the human oral microbiome, with its presence notably affecting the microbial dynamics within the oral cavity. Scardovia inopinata has been isolated from dental plaque and can be found in various body sites where oral bacteria reside, including the tongue and gingival crevices. Its role in the oral ecosystem is significant, as it is implicated in the development of dental caries, particularly in young children.The ability of Scardovia inopinata to adapt to different oxygen levels enables it to thrive in the diverse microenvironments within the mouth, where it can compete with other oral microbes for nutrients. Research has shown that this bacterium not only contributes to the pathogenesis of caries but may also influence the overall composition and health of the oral microbiome. Its interactions with other bacteria can have implications for the progression of dental diseases and may reveal potential targets for therapeutic interventions aimed at improving oral health. Thus, understanding Scardovia inopinata's metabolic strategies and ecological roles could provide insights into broader microbial dynamics and health outcomes." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Scardovia Scardovia inopinata Positive Anaerobe 641146 ADCX00000000.1 Bac0003780 Simonsiella muelleri ATCC 29453 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Simonsiella Simonsiella muelleri 641147 ADCY00000000.2 Bac0003781 Oceanisphaera arctica str. V1-41 "Oceanisphaera arctica str. V1-41 is a Gram-negative, spherical bacterium that exhibits aerobic metabolic capabilities and thrives optimally at a temperature of 25.0°C. This microbial strain is characterized by its distinct morphology, which may influence its ecological roles in marine environments where it is typically found.↵↵As a Gram-negative organism, Oceanisphaera arctica str. V1-41 possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that is commonly associated with various physiological and biochemical properties, including antibiotic resistance and membrane transport mechanisms. The spherical shape of this microbe may facilitate efficient nutrient uptake and gas exchange, which is particularly beneficial in its aerobic lifestyle.↵↵Given its optimal growth temperature of 25.0°C, Oceanisphaera arctica str. V1-41 is likely well-adapted to temperate marine environments, potentially playing a role in nutrient cycling and organic matter degradation within these ecosystems. The aerobic nature of this strain suggests that it may contribute to the oxidation of organic compounds, thus impacting the overall biogeochemical processes in its habitat. ↵↵Overall, the combination of its Gram-negative characteristics, spherical morphology, and aerobic metabolism positions Oceanisphaera arctica str. V1-41 as a potentially significant player in the microbial communities of marine environments, where it may influence ecological dynamics and contribute to the health of aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Oceanisphaera Oceanisphaera arctica Gram-negative sphere non-motile aerobic 25 mesophilic 641510 MPZM00000000.1 Bac0003782 Winogradskyella psychrotolerans RS-3 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella psychrotolerans 641526 ATMR00000000.1 Bac0003783 Tatumella morbirosei str. LMG 23360 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Tatumella morbirosei 642227 NZ_CM003276.1 Bac0003784 Cellulosilyticum lentocellum DSM 5427 "Cellulosilyticum lentocellum DSM 5427 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 40.0°C and is classified as an anaerobe. This organism is characterized by its ability to degrade cellulose, reflecting its potential role in the breakdown of plant materials in anaerobic environments. ↵↵As a member of the microbial community, C. lentocellum DSM 5427 may contribute significantly to carbon cycling, particularly in environments rich in cellulose such as decaying plant matter. Its anaerobic nature suggests it occupies ecological niches where oxygen is limited, such as in the gastrointestinal tracts of herbivorous animals or in sedimentary environments, where it can facilitate the conversion of organic matter into simpler compounds. ↵↵Understanding the metabolic pathways and ecological roles of C. lentocellum DSM 5427 can provide insights into its potential applications in biotechnology, particularly in the development of biofuels and bioprocesses aimed at sustainable waste management. Its cellulose-degrading capabilities highlight the importance of anaerobic bacteria in the decomposition of lignocellulosic materials, which is essential for nutrient recycling in various ecosystems." Bacillati Bacillota Clostridia Lachnospirales Cellulosilyticaceae Cellulosilyticum Cellulosilyticum lentocellum Negative Rod Yes Anaerobe 40 Mesophilic 642492 NC_015275.1 Bac0003785 Solemya pervernicosa gill symbiont Pseudomonadati Pseudomonadota Gammaproteobacteria Solemya pervernicosa gill symbiont 642797 MPRL00000000.1 Bac0003786 Mammaliicoccus stepanovicii Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Mammaliicoccus Mammaliicoccus stepanovicii 643214 NZ_LT906462.1 Bac0003787 Acidovorax avenae subsp. avenae ATCC 19860 "Acidovorax avenae, previously known as Acidovorax avenae subsp. avenae (Pseudomonas avenae), has recently emerged as a serious pathogen of rice (Oryzae sativa L.). The species is pathogenic to corn and oats, whereas pathogenicity to wheat is variable.This is the type strain (deposited as deposited as Pseudomonas alboprecipitans Rosen), which was isolated from a maize leaf in 1909 (adapted from PMID 18993005). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax avenae ATCC 19860 Negative Bacilli No 2 Aerobic Mesophilic HostAssociated Free living Nonsporulating No 643561 NC_015138.1 Bac0003788 Marivirga tractuosa DSM 4126 "Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) is a Gram-negative bacterium isolated from beach sand from Nha Trang, Khanh Hoa province, on the south central coast of Vietnam. M. tractuosa has an optimum growth temperature at 30 degrees Celsius. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/37901). (EBI Integr8)" Pseudomonadati Bacteroidota Cytophagia Cytophagales Marivirgaceae Marivirga Marivirga tractuosa DSM 4126 Negative Bacilli Yes 1 2 Obligate aerobic 30 Chemoorganotroph Mesophilic Free living Nonsporulating No 643867 NC_014750.1 Bac0003789 Methanocaldococcus sp. FS406-22 "Methanocaldococcus sp. (strain FS406-22) is an anaerobic, piezophilic, diazotrophic, hyperthermophilic marine archaeon isolated from deep-sea hydrothermal vent fluid. It is able to reduce N2 to NH3 at up to 92 degrees Celsius, which is 28 degrees higher than the current upper temperature limit of biological nitrogen fixation. Methanocaldococcus sp. grows at temperature between 58 to 92 degrees Celsius with N2 as the sole source of nitrogen. Maximal growth occurred at 90 degrees Celsius, and no growth is detected at 55 and 95 degrees Celsius. It is also able to produce methane. The 16S ribosomal RNA genes of Methanocaldococcus sp. is 99% similar to that of non-nitrogen fixing Methanocaldococcus jannaschii DSM 2661. At its optimal growth temperature of 90 degrees Celsius, Methanocaldococcus sp. expresses nifHDK genes which encode the nitrogenase enzyme complex. This increase in the temperature limit of nitrogen fixation could reveal a broader range of conditions for life in the subseafloor biosphere and other nitrogen limited ecosystems than previously estimated. (Adapted from: 17170307). (HAMAP: METSF)" Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus sp. FS406-22 FS406-22 Cocci No 1 1 Anaerobic 90 Lithotroph Hyperthermophilic Specialized Free living Nonsporulating No 644281 NC_013887.1 Bac0003790 Micromonospora aurantiaca ATCC 27029 "Micromonospora aurantiaca ATCC 27029 is a mesophilic, chemoheterotrophic, Gram-positive bacterium characterized by its filamentous shape; it can be found in various environments, including soil and decaying organic matter, and is classified as an obligate aerobe. This microbe exhibits a remarkable ability to thrive in diverse habitats, making it a subject of interest in environmental microbiology. As a mesophilic organism, M. aurantiaca prefers moderate temperatures, typically ranging from 20 to 45 degrees Celsius, which allows it to inhabit a variety of terrestrial ecosystems. Its chemoheterotrophic metabolism indicates that it derives its energy from organic compounds, relying on the breakdown of complex organic materials to obtain energy and nutrients. This bacterium is known for its filamentous morphology, which plays a significant role in its ecological interactions, allowing it to effectively colonize substrates and compete for resources. Being a Gram-positive organism, M. aurantiaca possesses a thick peptidoglycan layer in its cell wall, which not only provides structural integrity but also influences its staining characteristics and susceptibility to antibiotics. The obligate aerobic nature of this microbe necessitates the presence of oxygen for its metabolic processes, positioning it within environments where oxygen is readily available, such as surface soils. Beyond its ecological roles, Micromonospora aurantiaca ATCC 27029 has garnered attention for its potential applications in biotechnology. It produces a variety of bioactive compounds, including antibiotics, which could be leveraged in pharmaceuticals. Additionally, its ability to degrade complex organic substances positions it as a potential agent for bioremediation, offering solutions for environmental cleanup. With ongoing research, M. aurantiaca may reveal further applications in sustainable practices and medicine." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora aurantiaca (nom. illeg.) ATCC 27029 Positive Rod No 1 1 Aerobe 29 Mesophilic Multiple Free living Sporulating No 644283 NC_014391.1 Bac0003791 Arcanobacterium haemolyticum DSM 20595 "Arcanobacterium haemolyticum DSM 20595 is a gram-positive, rod-shaped bacterium that prefers mesophilic temperatures (optimal growth at around 30–37°C). Classified as a chemoheterotroph, this organism derives its energy and carbon from organic matter, making it reliant on the consumption of existing biomass. It is also categorized as a facultative anaerobe, capable of functioning in both aerobic and anaerobic environments. This microbe is often found in various body sites, particularly in human skin, throat, and respiratory tract. Its presence is notable as it can be part of the normal microbiota; however, it has been implicated in opportunistic infections, especially in immunocompromised individuals. The ability to thrive in different environments underscores its adaptability and importance in clinical microbiology. Arcanobacterium haemolyticum is noteworthy for its hemolytic activity, which can lead to lysis of red blood cells. This characteristic is especially significant in laboratory identification, as it can be detected through hemolysis on blood agar. The organism has been associated with pharyngitis and skin infections, particularly in adolescents and young adults, leading to confusion with streptococcal infections. The ability of A. haemolyticum to produce specific virulence factors, including toxins, also contributes to its pathogenic potential. Research has indicated that the bacterium may have a role in contributing to inflammatory responses, which could further complicate infections in susceptible populations. Additionally, its increasing recognition as a pathogen highlights the need for heightened awareness in clinical settings to ensure appropriate diagnosis and treatment." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium haemolyticum DSM 20595 Positive Rod No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Symbiotic Homo sapiens Nonsporulating Yes 644284 NC_014218.1 Bac0003792 Methanohalobium evestigatum Z-7303 "Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) is an extremely halophilic, methylotrophic, methanogenic, anaerobic archaeum isolated from microbial mat community in Arabat Lagoon, Crimea, Russia. It forms macrocystlike microcolonies with thick glycocalyxes. (adapted from: http://www.ncbi.nlm.nih.gov/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=42019). (HAMAP: METEZ)" Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalobium Methanohalobium evestigatum Z-7303 Rod Yes 1 1 Anaerobe 50 Lithotroph - Autotroph Thermophilic Specialized No 644295 NC_014253.1 Bac0003793 Xylella fastidiosa subsp. multiplex str. CFBP8078 "Xylella fastidiosa subsp. multiplex str. CFBP8078 is a Gram-negative, rod-shaped bacterium that exists predominantly in a single-cell arrangement and is classified as an aerobic organism. This strain is typically associated with host organisms, which suggests a reliance on specific plant hosts for its survival and proliferation. It has an optimal growth temperature of 26.0°C, indicating a preference for moderate environmental conditions.↵↵The Gram-negative nature of Xylella fastidiosa subsp. multiplex str. CFBP8078 is characterized by its thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interactions with host plants and potential pathogenicity mechanisms. The rod shape of this bacterium could be significant for its motility and colonization strategies within host tissues.↵↵Given its aerobic requirement, this strain likely inhabits environments where oxygen is readily available, which may influence its ecological niche within plant vascular systems. The host-associated habitat of Xylella fastidiosa subsp. multiplex str. CFBP8078 suggests that it may have co-evolved with specific plant species, potentially impacting local biodiversity and plant health. This relationship underscores the importance of understanding the dynamics between this bacterium and its host, as it may have implications for plant disease management and ecosystem stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles 644357 PHFS00000000.1 Bac0003794 Erwinia pyrifoliae DSM 12163 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia pyrifoliae 644651 NC_017388.1 Bac0003795 Pseudomonas stutzeri RCH2 "Pseudomonas stutzeri RCH2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolic characteristics, utilizing organic compounds as a heterotrophic energy source. This microorganism is primarily found in host-associated habitats, which suggests a potential symbiotic or commensal relationship with its host organisms. ↵↵The Gram-negative structure of P. stutzeri RCH2 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that often contributes to its resilience in diverse environments. As an aerobe, this bacterium requires oxygen for growth and metabolism, positioning it well within oxygen-rich niches commonly found in association with various hosts. ↵↵Understanding the physiological capabilities and habitat preferences of Pseudomonas stutzeri RCH2 can provide insights into its potential roles in microbial communities within host environments. Its heterotrophic lifestyle suggests a reliance on organic matter, which may influence nutrient cycling and the ecological dynamics of the host-associated microbiomes. The interaction of P. stutzeri RCH2 with its host could be significant, potentially contributing to the host's nutrient assimilation or influencing microbial community structure through its metabolic activities. Further investigation into these interactions may reveal important ecological functions of this microbe in its natural habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 644801 NC_019938.1 Bac0003796 Jonquetella anthropi E3_33 E1 Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Jonquetella Jonquetella anthropi No 1 645512 ACOO00000000.2 Bac0003797 Paraurantiacibacter namhicola Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Paraurantiacibacter Paraurantiacibacter namhicola 645517 NZ_CP016545.1 Bac0003798 Hephaestia caeni str. DSM 25527 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Hephaestia Hephaestia caeni 645617 QXDC00000000.1 Bac0003799 Hymenobacter roseosalivarius DSM 11622 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter roseosalivarius 645990 FWWW00000000.1 Bac0003800 Desulfosporosinus acidiphilus SJ4 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus acidiphilus anaerobic 646529 NC_018068.1 Bac0003801 Grimontia marina Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Grimontia Grimontia marina 646534 FIZY00000000.1 Bac0003802 Methanotorris formicicus Mc-S-70 Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanotorris Methanotorris formicicus 647171 AGJL00000000.1 Bac0003803 Shimia isoporae str. DSM 26433 "Shimia isoporae strain DSM 26433 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This specific temperature preference suggests that S. isoporae may be well-adapted to environments that are moderately warm, potentially indicating a niche within temperate regions or specific habitats where such thermal conditions prevail. ↵↵As a Gram-negative organism, S. isoporae possesses a distinctive cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is associated with various functional implications, including resistance to certain antibiotics and the ability to interact with host organisms in unique ways, although specific interactions remain to be elucidated.↵↵The aerobic nature of S. isoporae indicates that it relies on oxygen for its metabolic processes, which may influence its ecological roles, such as organic matter decomposition or nutrient cycling in its environment. Understanding the metabolic pathways and ecological interactions of S. isoporae could contribute valuable insights into the dynamics of microbial communities in which it participates. Overall, the traits of Shimia isoporae suggest its potential importance in specific ecological contexts, particularly in environments where aerobic activity is a key component of ecosystem functioning." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia isoporae Gram-negative rod aerobic 29 mesophilic 647720 SMGR00000000.1 Bac0003804 Haloactinopolyspora alba str. DSM 45211 "Haloactinopolyspora alba str. DSM 45211 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolic requirements. This organism thrives optimally at a temperature of 32.0 °C, suggesting a preference for moderate thermal conditions typically found in various terrestrial habitats. ↵↵The spore-forming capability of H. alba str. DSM 45211 indicates a potential for resilience in fluctuating environmental conditions, permitting survival during periods of nutrient scarcity or unfavorable conditions. This trait may also facilitate its dispersal in various ecosystems. The strict aerobic nature of this microbe implies that it relies on oxygen for its metabolic processes, which positions it within ecosystems where oxygen is readily available and highlights its potential role in organic matter decomposition and nutrient cycling.↵↵Given its classification and traits, H. alba str. DSM 45211 may contribute to the microbiome dynamics within soil environments, participating in complex interactions that enhance soil health and fertility. Understanding the ecological functions of such microorganisms could provide insights into their roles in biogeochemical cycles and their potential applications in bioremediation or organic farming practices." Bacillati Actinomycetota Actinomycetes Jiangellales Jiangellaceae Haloactinopolyspora Haloactinopolyspora alba Gram-positive rod aerobic 32 mesophilic spore-forming 648780 PYGE00000000.1 Bac0003805 Algorimicrobium echini Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bizionia Bizionia echini 649333 FOVN00000000.1 Bac0003806 Leadbetterella byssophila DSM 17132 "Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) is a strictly aerobic Gram-negative bacterium isolated from rom cotton-waste compounds used for the cultivation of the oyster mushroom in South Korea. Cells are rod-shaped with a width of 0.6-0.9 mm and length of 2-7 mm. The colonies are circular, 1-2 mm in diameter, smooth, light orange, shiny and convex with entire margin when grown on TSA. With prolonged incubation, colonies become dark orange. Gliding motility is not observed. L. byssophila grows at temperatures of 15-45 degrees Celsius and at a pH range of 6.0-8.0. It grows in the presence of 1% (w/v) NaCl, but not at 3% NaCl. Growth is observed in 0.5% yeast extract broth. It is able to degrade aesculin, gelatin, starch, tyrosine and Tween 20, but not casein, cellulose, chitin, DNA or Tweens 40 and 80. It is sensitive to ampicillin, carbenicillin, lincomycin, streptomycin and tetracycline. Antibiotic resistance is observed to benzylpenicillin, gentamicin, neomycin, oleandomycin and polymyxin B. (Adapted from PMID: 16280486). (EBI Integr8)" Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Leadbetterella Leadbetterella byssophila DSM 17132 Negative Rod No 1 2 Aerobic 29 Chemoorganotroph Mesophilic Free living Nonsporulating No 649349 NC_014655.1 Bac0003807 Actinomyces sp. oral taxon 848 str. F0332 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 848 649743 ACUY00000000.2 Bac0003808 Flavonifractor plautii DSM 6740 "Flavonifractor plautii DSM 6740 is a Gram-positive bacterium characterized as a facultative anaerobe. This species is notable for its ability to thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels. The Gram-positive nature of F. plautii suggests the presence of a thick peptidoglycan layer in its cell wall, which is a common characteristic of bacteria within this classification. ↵↵The facultative anaerobic metabolism of F. plautii enables it to utilize diverse carbon sources for energy production, potentially making it an important player in various microbial communities. This metabolic flexibility might allow it to occupy niches where oxygen availability fluctuates, such as in the gastrointestinal tract of certain organisms, although specific ecological roles have not been defined in the available data.↵↵Furthermore, the capacity of F. plautii to metabolize flavonoids could indicate a unique role in the degradation of plant-derived compounds, suggesting that this microbe may contribute to the breakdown of polyphenolic substances in its environment. This feature may have implications for understanding the microbial fermentation processes in gut microbiomes or composting systems, where the degradation of complex organic materials is crucial for nutrient cycling. Overall, the traits of Flavonifractor plautii highlight its potential ecological significance in anaerobic and oxygen-variable habitats." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii Positive Facultative anaerobe 649753 SLXC00000000.1 Bac0003809 Anaerostipes hadrus str. BPB5 "Anaerostipes hadrus strain BPB5 is a Gram-positive anaerobic bacterium predominantly found in fecal matter and the gastrointestinal tract of various host organisms. This microbe thrives in environments devoid of oxygen, which is characteristic of its habitat within the gut, where it likely plays a role in the fermentation of complex carbohydrates. ↵↵As an anaerobe, A. hadrus BPB5 contributes to the gut microbiome's diversity and functionality, participating in the breakdown of dietary fibers and the production of short-chain fatty acids, which are important for host health. The presence of this bacterium in fecal matter highlights its significance in the digestive processes of its host, where it may assist in maintaining gut homeostasis. ↵↵Additionally, the unique metabolic capabilities of A. hadrus BPB5 may offer insights into microbial interactions within the gut ecosystem, particularly in relation to the fermentation processes that support the overall microbial community. Understanding the specific roles of such anaerobic bacteria could enhance our knowledge of gut microbiome dynamics and their implications for host nutrition and health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes hadrus Positive Anaerobe feces; gut 649756 NZ_CP012098.1 Bac0003810 Anaerostipes hadrus "Anaerostipes hadrus is a mesophilic, chemoheterotrophic, gram-positive bacterium that exhibits a rod shape and thrives in anaerobic environments, primarily found in the human gut and various environments rich in organic materials. This microbe prefers moderate temperatures, typically ranging from 30 to 37 degrees Celsius, making it well-suited for the warm conditions of the intestines, where it plays a significant role in digestion. As a chemoheterotroph, A. hadrus derives its energy by breaking down organic compounds, which allows it to thrive on a diet of complex carbohydrates and other organic materials. This metabolic strategy is essential for its survival in the gut, where it helps in the fermentation of dietary fibers, producing short-chain fatty acids as by-products that are beneficial to human health, including butyrate, which serves as an energy source for colonic epithelial cells. The gram-positive nature of A. hadrus indicates a thick peptidoglycan layer in its cell wall, which provides structural integrity and protection in the harsh gut environment. Its rod shape (bacillus) enables efficient movement and colonization of intestinal niches. As an obligate anaerobe, this microbe requires environments devoid of oxygen for optimal growth, making it an essential component of the gut microbiota, contributing to the balance of microbial communities and overall gut health. Furthermore, Anaerostipes hadrus has been studied for its potential role in human health, particularly in relation to gut health, metabolic diseases, and inflammatory conditions. The production of beneficial metabolites, such as butyrate, has drawn attention to its potential therapeutic applications in promoting gut barrier function and modulating immune responses. Its ability to ferment a variety of substrates enhances its ecological versatility, making it a key player in the complex ecosystem of the human gastrointestinal tract." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes hadrus Positive Anaerobe feces; gut 649756 CZAU00000000.1 Bac0003811 Levilactobacillus brevis ATCC 14869 = DSM 20054 "Levilactobacillus brevis ATCC 14869 (also known as DSM 20054) is a Gram-positive, rod-shaped bacterium that can be found in both single cells and chains. This species exhibits a facultative anaerobic metabolism, allowing it to thrive in various oxygen conditions. L. brevis demonstrates optimal growth at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. ↵↵The habitat of L. brevis is noted to be diverse, indicating its ability to adapt to multiple ecological niches. This adaptability potentially allows it to play a significant role in fermentation processes, particularly in food production and preservation, where it may contribute to the development of flavor and texture in fermented products. ↵↵The ability of L. brevis to grow in chains may also influence its interactions within microbial communities, affecting both its competitive dynamics and its symbiotic relationships with other microorganisms. The ecological versatility of L. brevis underscores its potential utility in biotechnology and food science, where harnessing its metabolic capabilities can lead to innovative applications in food fermentation and preservation strategies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 649758 AWVK00000000.1 Bac0003812 Prevotella veroralis F0319 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella veroralis anaerobic 649761 ACVA00000000.1 Bac0003813 Halomonas daqiaonensis Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas daqiaonensis 650850 FOBC00000000.1 Bac0003814 Brevibacillus nitrificans "Brevibacillus nitrificans is a Gram-positive, rod-shaped bacterium known for its ability to form spores. This microorganism thrives optimally at a temperature of 37.0°C and exhibits a facultative aerobic or anaerobic metabolism, allowing it to adapt to varying oxygen conditions in its environment. ↵↵The spore-forming capability of Brevibacillus nitrificans suggests a robust survival strategy, enabling it to withstand adverse environmental conditions. Its facultative nature indicates versatility in energy production, which may contribute to its potential utility in various biotechnological applications, particularly in nutrient cycling processes such as nitrification. ↵↵Understanding the growth conditions and metabolic flexibility of Brevibacillus nitrificans may provide insights into its ecological roles in soil and water systems, particularly in nutrient-rich environments where nitrogen cycling is critical. This adaptability not only aids in its survival but may also position Brevibacillus nitrificans as a significant contributor to local microbial communities engaged in nitrogen transformation processes." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus nitrificans Gram-positive rod facultative aerobe/anaerobe 37 mesophilic spore-forming 651560 RHHU00000000.1 Bac0003815 Hymenobacter psychrophilus Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter psychrophilus 651662 FNOV00000000.1 Bac0003816 Rickettsia japonica YH Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia japonica 652620 NC_016050.1 Bac0003817 Prevotella sp. oral taxon 313 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 313 652722 NZ_CM009686.1 Bac0003818 Azospirillum sp. TSH20 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSH20 652754 LGQU00000000.1 Bac0003819 Azospirillum sp. TSH100 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSH100 652764 NZ_CP039639.1 Bac0003820 Mucilaginibacter mallensis "Mucilaginibacter mallensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. This microbe belongs to the genus Mucilaginibacter, which is characterized by its gelatinous appearance due to the production of exopolysaccharides. The Gram-negative nature of M. mallensis suggests a complex cell wall structure typical of this group, featuring an outer membrane that may contribute to its environmental resilience.↵↵Aerobic organisms like M. mallensis require oxygen for their metabolic processes, which positions them within ecosystems rich in oxygen availability. The optimal growth temperature of 25.0°C indicates that M. mallensis may be well-suited for temperate environments, potentially contributing to nutrient cycling in soil or aquatic systems where such conditions prevail. ↵↵Understanding the traits of Mucilaginibacter mallensis can provide insight into its ecological roles, particularly in the decomposition of organic matter and the potential for interactions with other microorganisms. Its ability to produce exopolysaccharides may enhance soil structure and water retention, underscoring its importance in sustaining microbial diversity and ecosystem health. Further research into this species could illuminate its contributions to microbial communities and its adaptive strategies in varying environmental contexts." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter mallensis Gram-negative rod non-motile aerobic 25 mesophilic 652787 NZ_LT629740.1 Bac0003821 Halopseudomonas bauzanensis str. W13Z2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas bauzanensis 653930 JFHS00000000.1 Bac0003822 Halopseudomonas bauzanensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas bauzanensis 653930 FOGN00000000.1 Bac0003823 Candidatus Francisella endociliophora Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Candidatus Francisella endociliophora 653937 NZ_CP009574.1 Bac0003824 Edaphosphingomonas haloaromaticamans Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Edaphosphingomonas Edaphosphingomonas haloaromaticamans 653954 MIPT00000000.1 Bac0003825 Oenococcus oeni AWRIB429 "Oenococcus oeni AWRIB429 is a Gram-positive, nonsporulating coccus that thrives as a facultative anaerobe, demonstrating its adaptability to varying oxygen levels in diverse habitats. This species has an optimal growth temperature of 17.0°C, suggesting a preference for cooler environments, which may reflect its ecological niche in specific fermentation processes.↵↵As a member of the lactic acid bacteria, O. oeni is primarily associated with the fermentation of wine and other beverages, where it plays a crucial role in malolactic fermentation. This process enhances the flavor profile and stability of wine, indicating that O. oeni AWRIB429 may have significant implications for the wine industry, particularly in the context of flavor development and preservation.↵↵The ability of Oenococcus oeni AWRIB429 to thrive in multiple habitats underlines its ecological versatility, suggesting that it could potentially adapt to various fermentation conditions beyond traditional wine production. This adaptability may also provide insights into the broader ecological roles of lactic acid bacteria in food fermentation and preservation, as well as their contributions to microbial community dynamics in diverse environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Oenococcus Oenococcus oeni Positive Cocci No 1 1 Facultative anaerobe 17 Mesophilic Multiple Free living Nonsporulating 655225 ACSE00000000.1 Bac0003826 Sunxiuqinia elliptica Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Sunxiuqinia Sunxiuqinia elliptica 655355 FONW00000000.1 Bac0003827 Anaerococcus vaginalis ATCC 51170 "Anaerococcus vaginalis ATCC 51170 is a gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites, including the skin, mucous membranes, and gastrointestinal tract, of humans and other animals. As an obligate anaerobe, this microbe requires the absence of oxygen to grow and survive. The gram-positive cell wall of A. vaginalis provides it with a unique set of interactions with its environment and hosts. Its cocci shape allows it to aggregate and form clusters, which may contribute to its ability to colonize and persist in various niches. As a chemoheterotroph, A. vaginalis obtains its energy by consuming organic compounds, breaking them down to produce ATP, and using this energy to sustain its metabolic processes. The mesophilic temperature preference of A. vaginalis allows it to thrive in a wide range of temperatures, making it a versatile microbe that can adapt to different environments. Being an obligate anaerobe, A. vaginalis has evolved to occupy a specific ecological niche, where oxygen is scarce or absent, and has developed unique metabolic pathways to cope with this environment. This microbe has been isolated from clinical specimens, such as blood, wound, and vaginal samples, and has been implicated in various infections, including bacteremia and abscesses, highlighting its potential pathogenic role in humans. The ability of A. vaginalis to produce volatile organic compounds, such as short-chain fatty acids, contributes to its role in shaping the microbial community and influencing the host's health." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus vaginalis Positive Cocci Anaerobe 655811 ACXU00000000.1 Bac0003828 Aerococcus viridans ATCC 11563 = CCUG 4311 "Aerococcus viridans ATCC 11563 = CCUG 4311 is a Gram-positive, cocci-shaped bacterium that thrives at mesophilic temperatures, displaying heterotrophic metabolism. This organism is typically found in various body sites, including the respiratory tract, oral cavity, and other mucosal surfaces of humans and animals. As a facultative anaerobe, Aerococcus viridans can grow in both the presence and absence of oxygen, allowing it to adapt to different environments within host organisms. The Gram-positive nature of Aerococcus viridans indicates a thick peptidoglycan layer in its cell wall, which provides structural integrity and protection against environmental stresses. Its cocci shape contributes to its ability to form clusters, resembling staphylococci but distinguishing itself with its unique metabolic capabilities. As a heterotroph, it relies on organic compounds for growth and energy, utilizing a range of substrates found in its natural habitats. This versatility enhances its survival in diverse ecological niches, particularly within the human microbiota. Facultative anaerobism allows Aerococcus viridans to thrive in oxygen-rich environments, such as the oral cavity, where it may engage in symbiotic relationships with other microorganisms. Additionally, it can switch to anaerobic metabolic pathways when oxygen levels are low, displaying adaptability that is advantageous in fluctuating conditions. Notably, Aerococcus viridans has been associated with opportunistic infections, particularly in immunocompromised individuals, demonstrating its potential as a pathogen. Its role in the production of virulence factors, such as biofilm formation and the ability to evade host immune responses, underscores its importance in clinical microbiology and potential implications in healthcare settings where it may contribute to serious infections, including endocarditis." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus viridans Positive Cocci Facultative anaerobe 655812 ADNT00000000.1 Bac0003829 Streptococcus oralis ATCC 35037 "Streptococcus oralis ATCC 35037 is a Gram-positive coccus that typically arranges itself in pairs or chains. This bacterium is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Streptococcus oralis is predominantly host-associated, suggesting its natural habitat lies within the microbiota of various host organisms, likely including humans.↵↵As a member of the Streptococcus genus, S. oralis plays a role in the complex microbial communities found in the oral cavity, where it may contribute to dental biofilm formation. The facultative anaerobic nature of this microbe allows it to adapt to the fluctuating oxygen levels typically encountered in the oral environment, which can range from oxygen-rich areas to more anaerobic sites, such as those found in dental plaque.↵↵Understanding the traits of Streptococcus oralis ATCC 35037 is essential for elucidating its potential interactions within the oral microbiome. Its ability to exist in diverse oxygen conditions may facilitate its resilience and adaptability, allowing it to occupy ecological niches that are otherwise inhospitable to strictly aerobic or anaerobic bacteria. This adaptability underscores the importance of Streptococcus oralis in maintaining oral health and its potential role in the dynamics of oral microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 655813 ADMV00000000.1 Bac0003830 Pandoraea vervacti str. NS15 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea vervacti 656178 NZ_CP010897.2 Bac0003831 Pandoraea faecigallinarum str. DSM 23572 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea faecigallinarum 656179 NZ_CP011808.2 Bac0003832 Arthrobacter alpinus str. ERGS4:06 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter alpinus 656366 NZ_CP013200.1 Bac0003833 Escherichia coli H386 "Escherichia coli H386 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli H386 can grow in both aerobic and anaerobic environments, allowing it to exploit a variety of niches within its host. ↵↵The capacity to switch between aerobic and anaerobic respiration is significant, as it enables E. coli H386 to adapt to fluctuating oxygen levels within different tissues or environments it encounters. This trait may facilitate its survival in diverse microenvironments within the host, contributing to its resilience and metabolic versatility. Understanding E. coli H386’s physiological traits can provide insights into its role in the microbiome of its host, potentially influencing nutrient cycling and host health. The ability to thrive in pairs or as single cells may also reflect its adaptability in colonizing different ecological niches within its host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656397 ADJB00000000.1 Bac0003834 Escherichia coli H736 "Escherichia coli H736 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the typical physiological conditions found in warm-blooded hosts. As a facultative anaerobe, E. coli H736 can adapt to varying oxygen conditions, allowing it to grow in both aerobic and anaerobic environments.↵↵The host-associated habitat of E. coli H736 indicates its potential role within the microbiota of certain organisms, contributing to the complex interactions that occur in host-associated ecosystems. While specific ecological interactions and functions of this strain are not detailed in the available data, its capacity to thrive in diverse environments suggests a significant adaptability and resilience, potentially facilitating its survival in various host conditions. Understanding the characteristics of E. coli H736 could provide insights into its ecological roles and contributions to host health or disease, especially given the broader context of E. coli as a model organism in microbiological research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656414 ADAU00000000.1 Bac0003835 Escherichia coli TA249 "Escherichia coli TA249 is a Gram-negative rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli TA249 can grow in both aerobic and anaerobic environments, allowing it to exploit a range of niches within host organisms.↵↵The adaptability of E. coli TA249 to various oxygen levels and its optimal growth temperature suggest that it may play a role in diverse metabolic processes within its host. This versatility is characteristic of many members of the Enterobacteriaceae family, which can contribute to the complex microbiota of the gastrointestinal tract. The presence of E. coli in host-associated environments underscores its potential implications in nutrient processing and homeostasis.↵↵In broader ecological terms, the ability of E. coli TA249 to exist in diverse oxygen conditions may facilitate its survival in fluctuating environments, such as those found in both the intestinal lumen and within the host's tissues. This resilience highlights the importance of E. coli strains like TA249 in maintaining microbial diversity and functional dynamics within host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656441 ADKD00000000.1 Bac0003836 Escherichia coli TA280 "Escherichia coli TA280 is a Gram-negative bacterium characterized by its rod shape and arrangement in pairs or as singles. This strain thrives at an optimal temperature of 37.0°C, which aligns with its host-associated habitat, suggesting its adaptation to living within warm-blooded hosts. As a facultative anaerobe, E. coli TA280 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to survive in diverse environments that may vary in oxygen availability.↵↵The ability to adapt to different oxygen conditions may confer an ecological advantage, enabling E. coli TA280 to colonize various niches within the host organism. This metabolic flexibility is particularly significant in the context of the intestinal microbiome, where fluctuating oxygen levels can occur due to the presence of other microbial communities and dietary changes.↵↵The presence of E. coli TA280 in host-associated environments highlights its potential role in maintaining the balance of microbial populations. Understanding the physiological traits of this strain can provide insights into its interactions within the host microbiome, as well as its contributions to the overall health and metabolic processes of the host organism. Further investigation into the specific functions and interactions of E. coli TA280 within its ecological niche could elucidate its significance in microbial ecology and host dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656444 ADBA00000000.1 Bac0003837 Escherichia coli TW10509 "Escherichia coli TW10509 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cellular arrangement that includes both single cells and pairs, reflecting its typical growth patterns. E. coli TW10509 has an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. ↵↵As a facultative anaerobe, E. coli TW10509 can thrive in both aerobic and anaerobic conditions, allowing it to colonize various niches within the host's microbiota. This versatility in oxygen utilization may contribute to its survival and proliferation in diverse environments, such as the intestinal tract, where oxygen levels can fluctuate. ↵↵The ecological role of E. coli TW10509 may extend beyond mere commensalism; its ability to adapt to different oxygen levels and temperatures suggests it could play a significant part in the host’s microbial community dynamics, possibly influencing nutrient cycling and metabolic interactions among cohabitating microbial species. Understanding the specific traits of E. coli TW10509 can provide insights into its potential contributions to the overall health and homeostasis of its host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656449 AEHW00000000.1 Bac0003838 Blautia obeum A2-162 "Blautia obeum A2-162 is a microbe that thrives in a temperature range of 37°C to 42°C, classified as thermophilic. It is a chemoheterotroph that derives its energy from the breakdown of organic compounds, specifically amino acids and sugars. This microbe produces energy through anaerobic respiration, utilizing alternate electron acceptors in the absence of oxygen. Gram-staining reveals that Blautia obeum A2-162 has a Gram-positive cell wall, indicating a thick peptidoglycan layer. The microbe's shape is irregular, with a long, curved, or branched cell morphology. It is found in all body sites, including the gut, skin, and respiratory tract, across all possible species. Oxygen preference is characterized as a facultative anaerobe, meaning that while it can survive in the presence of oxygen, it can also thrive in its absence. Further investigation reveals that Blautia obeum A2-162 is a crucial member of the human gut microbiome, playing a role in the breakdown of dietary polysaccharides and amino acids. It has been isolated from human faeces and shown to dominate in the gut of patients with irritable bowel syndrome (IBS). Notably, Blautia obeum A2-162 has been proposed as a potential probiotic, due to its ability to modulate the gut microbiome and alleviate symptoms of IBS. Its unique metabolic properties make it an attractive target for further research into the treatment of gastrointestinal disorders." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 657314 NC_021022.1 Bac0003839 Roseburia intestinalis M50/1 "Roseburia intestinalis M50/1 is a Gram-positive, rod-shaped bacterium that thrives in a temperature range of mesophilic to thermophilic environments, belonging to the category of Psychrophiles. It is a Heterotroph, obtaining energy by breaking down organic compounds, specifically complex polysaccharides, in anaerobic conditions. This microbe produces energy through the process of fermentation, wherein it converts organic matter into ATP. The Gram stain reveals a positive reaction, indicating the presence of a thick peptidoglycan layer in the bacterial cell wall. Roseburia intestinalis M50/1 exhibits a rod-shaped morphology, with a typical length of 0.5-1.5 μm and a width of 0.2-0.5 μm. It is found in the intestinal tract of humans and animals, where it plays a crucial role in the breakdown and metabolism of complex carbohydrates. As an Obligate Anaerobe, Roseburia intestinalis M50/1 is highly sensitive to oxygen and requires a strictly anaerobic environment to survive. This is evident in its inability to tolerate even low levels of oxygen, which can inhibit its metabolic processes. Despite being a relatively unknown microbe, Roseburia intestinalis M50/1 has significant implications in human health. Its ability to degrade complex carbohydrates makes it a valuable player in the gut microbiome, contributing to the regulation of blood sugar levels and the prevention of diseases such as diabetes and metabolic syndrome. Furthermore, studies have shown that Roseburia intestinalis M50/1 is capable of producing short-chain fatty acids, which are essential for gut health and immune system function. The unique genetic makeup of this microbe also offers potential insights into the evolution of gut microbiota and the development of novel probiotics. As such, Roseburia intestinalis M50/1 remains an important area of research, offering promising avenues for the understanding and improvement of human health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia intestinalis Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 657315 NC_021040.1 Bac0003840 Agathobacter rectalis DSM 17629 "Agathobacter rectalis DSM 17629 is a Gram-positive, rod-shaped bacterium that functions as a chemoheterotroph, obtaining its energy from organic compounds. This species is nonsporulating and thrives optimally at a temperature of 37.0°C, which is indicative of its potential association with warm-blooded hosts or environments that maintain similar temperatures. A. rectalis is classified as an anaerobe, meaning it requires an oxygen-free environment for growth, thereby suggesting its adaptation to specific niches where oxygen levels are low or absent.↵↵The habitat of A. rectalis is diverse, indicating its ability to colonize and survive in various anaerobic environments. This flexibility may allow it to play a role in the complex microbial communities found in the gastrointestinal tracts of hosts. The presence of A. rectalis in such habitats could contribute to the degradation of organic matter and the fermentation processes that are essential for nutrient cycling and maintaining gut health.↵↵Given its anaerobic nature and chemoheterotrophic lifestyle, A. rectalis may be involved in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids, which are important for gut health and host metabolism. This highlights A. rectalis as a potentially significant player in the gut microbiome, underscoring the importance of anaerobic bacteria in maintaining the ecological balance within various habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 657318 NC_021010.1 Bac0003841 Pacificibacter marinus "Pacificibacter marinus is a Gram-negative, ovoid bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its distinct morphological shape, which contributes to its classification within the broader bacterial community. ↵↵As a Gram-negative organism, Pacificibacter marinus possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microorganisms and its response to environmental stresses. The preference for aerobic conditions suggests that this bacterium relies on oxygen for energy production, potentially positioning it within marine ecosystems where oxygen is readily available.↵↵The optimal growth temperature of 29.0°C indicates that Pacificibacter marinus is well-adapted to moderately warm aquatic environments, which may include coastal or open ocean habitats. This temperature preference highlights its potential role in biogeochemical processes that occur in marine ecosystems, particularly those linked to organic matter decomposition and nutrient cycling.↵↵Given its specific growth requirements and morphological characteristics, Pacificibacter marinus may serve as an important indicator species for assessing the health of marine environments, particularly in relation to temperature and oxygen levels. Its presence could provide insights into the dynamics of microbial communities in response to changing marine conditions, such as climate change or pollution." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pacificibacter Pacificibacter marinus Gram-negative ovoid non-motile aerobic 29 mesophilic 658057 FWFW00000000.1 Bac0003842 Lachnospiraceae bacterium 3_1_57FAA_CT1 "The Lachnospiraceae bacterium 3_1_57FAA_CT1 is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites across different species, including the gastrointestinal tract, skin, and oral cavity, of humans, animals, and insects. As a Chemoheterotroph, this bacterium relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones. Its rod shape allows for efficient movement and colonization in diverse environments. The bacterium's Gram-positive cell wall provides protection against external stresses, while its mesophilic nature enables it to grow optimally at moderate temperatures. As an Obligate Anaerobe, the Lachnospiraceae bacterium 3_1_57FAA_CT1 requires the absence of oxygen to survive, which is consistent with its presence in low-oxygen environments such as the gut.The bacterium's ability to inhabit various body sites is likely due to its versatile metabolic capabilities, allowing it to adapt to different nutrient availability and environmental conditions. Its presence in the gastrointestinal tract, for example, suggests a role in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which can provide energy to the host. The Lachnospiraceae bacterium 3_1_57FAA_CT1 has been implicated in the production of certain metabolites that can influence host health, and its unique metabolic profile has led to investigations into its potential as a probiotic agent, with studies exploring its ability to modulate the immune system and produce anti-inflammatory compounds." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 3_1_57FAA_CT1 No 1 Anaerobe Chemoheterotroph Animal intestinal microflora Nonsporulating 658086 ACTP00000000.2 Bac0003843 Lachnospiraceae bacterium 7_1_58FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 7_1_58FAA 658087 ACTW00000000.1 Bac0003844 Lachnospiraceae bacterium 9_1_43BFAA "The Lachnospiraceae bacterium 9_1_43BFAA is a Gram-positive, rod-shaped microorganism that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites across different species, including the gut, skin, and respiratory tract of humans, animals, and insects. As an Obligate Anaerobe, this bacterium requires the absence of oxygen to survive and grow, which is reflected in its metabolic processes.Elaborating on its Gram-positive characteristic, the bacterium's cell wall is composed of a thick peptidoglycan layer, providing structural support and maintaining the cell's shape. The rod-shaped morphology allows for efficient absorption of nutrients and interaction with the surrounding environment. Its mesophilic temperature preference indicates that it grows best in moderate temperatures, typically between 20-45°C, making it well-suited for inhabiting various ecological niches. As a Chemoheterotroph, the bacterium relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its metabolic activities. The Lachnospiraceae bacterium 9_1_43BFAA can be found in diverse body sites, suggesting its adaptability and ability to colonize different environments. Its obligate anaerobic nature implies that it has evolved unique metabolic pathways to cope with the absence of oxygen, likely involving fermentation or other anaerobic respiration processes. This microbe plays a significant role in the ecosystem, particularly in the context of gut health, where it contributes to the breakdown of complex carbohydrates and production of short-chain fatty acids, influencing the host's overall well-being. The Lachnospiraceae bacterium 9_1_43BFAA has been implicated in the production of anti-inflammatory compounds, which can have far-reaching implications for the treatment of various diseases, including inflammatory bowel disease and other disorders associated with dysregulated gut microbiota." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 9_1_43BFAA No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 658088 ACTX00000000.1 Bac0003845 Lachnospiraceae bacterium 5_1_63FAA "The Lachnospiraceae bacterium 5_1_63FAA is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can inhabit all body sites in various species, including the human gut, skin, and respiratory tract, and is an Obligate Anaerobe. As a Gram-positive bacterium, it has a thick peptidoglycan layer in its cell wall, providing it with a rigid structure and contributing to its resistance to environmental stressors. Its rod shape allows for efficient movement and colonization in its host environment. The mesophilic temperature preference indicates that this bacterium grows best in moderate temperatures, typically between 20-45°C, which is consistent with the temperatures found in many animal hosts. As a Chemoheterotroph, the Lachnospiraceae bacterium 5_1_63FAA relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its metabolic processes. Its ability to inhabit all body sites in various species suggests a high degree of adaptability and versatility. The absence of oxygen is crucial for its survival, as it is an Obligate Anaerobe, meaning it cannot tolerate oxygen and requires a strictly anaerobic environment to grow and thrive. This bacterium plays a significant role in the breakdown of complex polysaccharides and production of short-chain fatty acids, which can have a profound impact on the health and well-being of its host. The Lachnospiraceae bacterium 5_1_63FAA has been implicated in the regulation of the immune system and the maintenance of a healthy gut microbiome, with its metabolic byproducts influencing the expression of genes involved in inflammation and immune response." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 5_1_63FAA Uncharacterized Anaerobe 658089 ACTS00000000.1 Bac0003846 Pseudomonas sp. R11-23-07 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. R11-23-07 658632 NZ_CP027761.1 Bac0003847 Pseudomonas sp. R4-34-07 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. R4-34-07 658642 NZ_CP027760.1 Bac0003848 Pseudomonas sp. R4-35-07 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. R4-35-07 658643 NZ_CP027732.1 Bac0003849 Erysipelotrichaceae bacterium 3_1_53 "The Erysipelotrichaceae bacterium 3_1_53 is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a Chemoheterotroph, and can be found in various body sites across all possible species, including the skin, gut, and respiratory tract, and is an Obligate Anaerobe. As a Gram-positive bacterium, its cell wall is composed of a thick layer of peptidoglycan, which provides rigidity and maintains its rod-like shape. The mesophilic temperature preference of this microbe allows it to grow best in moderate temperatures, typically between 20-45°C, making it well-suited to inhabit various environments. As a Chemoheterotroph, the Erysipelotrichaceae bacterium 3_1_53 relies on organic compounds for energy and carbon, obtaining these nutrients by breaking down complex molecules. Its presence in diverse body sites suggests a versatile and adaptable nature, capable of colonizing and thriving in different ecological niches. The obligate anaerobic characteristic of this microbe necessitates the absence of oxygen for growth, highlighting its intolerance to oxidative stress. This bacterium has been found to play a significant role in the breakdown of complex polysaccharides in the gut, contributing to the digestion and absorption of nutrients, and its unique metabolic capabilities have led to research into its potential applications in biotechnology and pharmaceutical industries." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium 3_1_53 Uncharacterized Anaerobe 658659 ACTJ00000000.1 Bac0003850 Bacillus siamensis str. SCSIO 05746 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus siamensis 659243 NZ_CP025002.1 Bac0003851 Halorientalis regularis Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis regularis 660518 FNBK00000000.1 Bac0003852 Halogranum gelatinilyticum Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogranum Halogranum gelatinilyticum 660521 FNHL00000000.1 Bac0003853 Haloplanus aerogenes str. JCM 16430 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus aerogenes 660522 NZ_CP034146.1 Bac0003854 Haloplanus aerogenes str. CGMCC 1.10124 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus aerogenes 660522 REFS00000000.1 Bac0003855 Carboxydothermus islandicus str. SET IS-9 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Carboxydothermus Carboxydothermus islandicus anaerobic 661089 BDJL00000000.1 Bac0003856 Marmoricola ginsengisoli str. Gsoil 097 "Marmoricola ginsengisoli strain Gsoil 097 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. Its Gram-positive nature suggests a thick peptidoglycan layer in the cell wall, which may confer certain advantages in terms of environmental resilience compared to Gram-negative bacteria.↵↵The non-spore-forming characteristic of Marmoricola ginsengisoli str. Gsoil 097 implies that it may not possess mechanisms for surviving extreme conditions typically associated with spore formation, such as desiccation or heat. Instead, its survival strategies might rely on other metabolic adaptations suited to its aerobic lifestyle. The requirement for oxygen indicates that this bacterium likely participates in aerobic respiration, utilizing oxygen as a terminal electron acceptor, which can influence its habitat preferences and interactions with other microbial communities.↵↵This strain's specific ecological niche may be associated with environments rich in organic material, where aerobic conditions prevail, potentially contributing to processes such as organic matter decomposition or nutrient cycling. Understanding the physiological traits of Marmoricola ginsengisoli str. Gsoil 097 can provide insights into its role in microbial ecosystems, particularly in contexts where aerobic organisms dominate." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides marmoriginsengisoli Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 661483 RJSE00000000.1 Bac0003857 Pseudobacter ginsenosidimutans str. DSM 18116 "Pseudobacter ginsenosidimutans str. DSM 18116 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic respiration and is categorized as non-spore-forming. This microbial strain thrives optimally at a temperature of 29.0 °C, suggesting a preference for moderately warm environments. The Gram-negative cell wall structure typically features a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various ecological niches.↵↵As an aerobic organism, Pseudobacter ginsenosidimutans str. DSM 18116 likely plays a role in the carbon cycle by utilizing oxygen for metabolic processes, which may include the degradation of organic matter in its environment. The absence of sporulation indicates that this organism may rely on other survival strategies rather than forming spores to withstand unfavorable conditions. ↵↵The specific adaptation to a moderate temperature could imply that Pseudobacter ginsenosidimutans str. DSM 18116 is well-suited to environments such as soil or plant rhizospheres, where temperatures can fluctuate but often remain within a temperate range. This adaptability could render the strain significant in biotechnological applications, particularly those related to the degradation of plant-derived compounds, such as ginsenosides, which are of interest in pharmacological studies. Further exploration of its metabolic capabilities could reveal insights into its ecological role and potential applications in bioremediation or natural product synthesis." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Pseudobacter Pseudobacter ginsenosidimutans Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 661488 SGXA00000000.1 Bac0003858 Haloarcula marismortui ATCC 33800 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula marismortui No 1 Aerobe 40 Chemoorganotroph Mesophilic Aquatic Free living Singles 662476 AOLR00000000.1 Bac0003859 Leucobacter sp. G161 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter sp. G161 663704 LOHP00000000.1 Bac0003860 Pseudomonas savastanoi pv. retacarpa "Pseudomonas savastanoi pv. retacarpa is a Gram-negative, rod-shaped bacterium characterized by its arrangement in singles and its heterotrophic mode of nutrition. As an aerobic organism, it requires oxygen for growth and metabolism, thriving in various habitats where organic compounds are available for energy. The ability to adapt to multiple environments highlights its ecological versatility, potentially allowing it to exploit a range of organic substrates.↵↵The distinctive rod shape and single-cell arrangement of P. savastanoi pv. retacarpa provide insights into its physiological and ecological strategies, particularly in its ability to colonize diverse niches. Being a heterotroph, this microbe plays an important role in the decomposition of organic matter, contributing to nutrient cycling in its habitats. Its aerobic nature suggests a preference for environments rich in oxygen, which may include soil, water, and plant surfaces, further enhancing its ecological impact.↵↵Understanding the traits of P. savastanoi pv. retacarpa not only sheds light on its biological characteristics but also emphasizes its potential interactions within microbial communities, where it may influence the dynamics of nutrient availability and microbial diversity. Such insights are crucial for appreciating the role of this bacterium in its ecosystem, particularly in relation to its adaptability and functional contributions to the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 663708 RBNM00000000.1 Bac0003861 Pseudomonas syringae pv. avii "Pseudomonas syringae pv. avii is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a heterotroph, deriving its energy from organic compounds. It is an aerobic organism, indicating its requirement for oxygen to sustain metabolic processes. Pseudomonas syringae pv. avii has been identified in a variety of habitats, which suggests its adaptability and potential for widespread distribution in diverse environments.↵↵The presence of Pseudomonas syringae pv. avii in multiple habitats may reflect its resilience and ecological versatility, allowing it to thrive in various niches. The organism's aerobic nature and heterotrophic lifestyle further indicate its role in nutrient cycling within these ecosystems. Understanding the specific ecological roles and interactions of Pseudomonas syringae pv. avii can provide insights into microbial dynamics and the functioning of the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 663959 NZ_LT963402.1 Bac0003862 Winogradskyella pacifica str. CECT 7948 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella pacifica 664642 QREI00000000.1 Bac0003863 Haloechinothrix alba "Haloechinothrix alba is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0°C. Characterized by its non-spore-forming nature, H. alba's physiological traits suggest it may be adapted to stable, nutrient-rich environments where aerobic respiration is prevalent. The absence of sporulation indicates a reliance on vegetative growth for survival and reproduction, implying that H. alba may be sensitive to environmental stresses that would typically trigger sporulation in other bacterial taxa. ↵↵The specific growth temperature of 37.0°C is particularly notable, as it aligns with the thermal preferences of many mesophilic organisms, which are commonly found in warm-blooded hosts or in environments influenced by human activity. This temperature adaptability may provide insights into its potential ecological niches and interactions with other microbial communities. Further research into Haloechinothrix alba could elucidate its role in biogeochemical cycles or its interactions within microbial consortia, particularly in aerobic habitats where competition for resources is intense. Understanding its metabolic pathways and ecological functions may enhance our comprehension of microbial dynamics in various environments." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Haloechinothrix Haloechinothrix alba Gram-positive rod non-motile aerobic 37 mesophilic non-spore-forming 664784 FZNW00000000.1 Bac0003864 Thermobifida cellulosilytica TB100 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Thermobifida Thermobifida cellulosilytica 665004 LGEM00000000.1 Bac0003865 Erwinia amylovora CFBP1430 "The genus Erwinia currently contains both pathogenic and nonpathogenic bacteria. E.amylovora is a pathogen which causes fire blight, a devastating disease of Rosaceae, which poses a major threat to apple, pear and quince. Fire blight can develop very rapidly and results in scorched symptoms which can kill an entire orchard in a year. The bacterium originated in North America and has spread to other continents; from Europe an eastward advance is threatening the native origin of apple germplasm in Central Asia. It is spread by flower-foraging insects, especially honeybees, in what is thought to be a passive association.This highly virulent strain, CFBP1430, was isolated from hawthorn (Crataegus sp.) in 1972 in France. It is over 99.99% identical to an American isolate ATCC 49946 (ERWAE), suggesting there has been minimal evolution since the global dispersion of E.amylovora. There has however been a large-scale rearrangement of the genome resulting in a position exchange of 2 large portions of the chromosome. Additionally ERWAE has a second larger plasmid (pEA72) associated with it. Interestingly 1 type III secretion system has high homology to the insect endosymbiont Sodalis glossidinius str. morsitans (SODGM) perhaps suggesting a closer insect association beyond the known passive dispersal. Comparison with pathogenic E.pyrifoliae and the epiphyte E.tasmaniensis will hopefully shed light on the mechanisms of virulence and host range and provide information to help combat this devastating pathogen (adapted from PMID 20118253 and 20192826). (HAMAP: ERWAC)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia amylovora Negative Rod Yes 1 2 Facultative Mesophilic HostAssociated Free living Nonsporulating No 665029 NC_013961.1 Bac0003866 Breoghania corrubedonensis str. DSM 23382 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Breoghania Breoghania corrubedonensis 665038 QAYG00000000.1 Bac0003867 Devosia enhydra Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia enhydra 665118 FPKU00000000.1 Bac0003868 Prosthecomicrobium hirschii str. 16 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Ancalomicrobiaceae Prosthecodimorpha Prosthecodimorpha hirschii 665126 LJYW00000000.1 Bac0003869 Desulfovibrio sp. 6_1_46AFAA Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 6_1_46AFAA 665942 ACWM00000000.1 Bac0003870 Neisseria sp. GT4A_CT1 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. GT4A_CT1 665946 ACWS00000000.1 Bac0003871 Subdoligranulum sp. 4_3_54A2FAA "Subdoligranulum sp. 4_3_54A2FAA is a Gram-positive bacterium characterized by its unique cellular structure and potential metabolic capabilities. As a member of the diverse microbial community, this species is notable for its Gram-positive nature, which suggests a thicker peptidoglycan layer in its cell wall compared to Gram-negative counterparts. This structural feature may confer stability and protection in various environmental conditions.↵↵The specific physiological and metabolic pathways of Subdoligranulum sp. 4_3_54A2FAA remain to be elucidated; however, Gram-positive bacteria are often associated with fermentative metabolism or the ability to utilize complex carbohydrates. This metabolic flexibility may allow Subdoligranulum sp. 4_3_54A2FAA to thrive in diverse niches, potentially contributing to the cycling of nutrients in its ecosystem.↵↵In summary, while much remains to be discovered regarding the functional roles and ecological interactions of Subdoligranulum sp. 4_3_54A2FAA, its Gram-positive characteristic indicates a robust cellular architecture that may support its survival and adaptability in varied environments. Understanding the ecological roles of such microorganisms can provide insights into microbial diversity and the intricate relationships within their habitats." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Subdoligranulum sp. 4_3_54A2FAA Positive 665956 ACWW00000000.1 Bac0003872 Bacillus sp. 7_6_55CFAA_CT2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 7_6_55CFAA_CT2 665957 ACWE00000000.1 Bac0003873 Planktomarina temperata RCA23 "Planktomarina temperata RCA23 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This marine microbe is part of the diverse community of microorganisms found in coastal waters, where it likely plays a role in nutrient cycling and the degradation of organic matter.↵↵As a member of the Planktomarina genus, P. temperata RCA23 is adapted to planktonic lifestyles, which may contribute to its ecological significance in marine ecosystems. The rod shape of this bacterium may enhance its motility and nutrient uptake, facilitating its survival in the dynamic and competitive environments of coastal waters.↵↵Given its aerobic nature, Planktomarina temperata RCA23 relies on oxygen for its metabolic processes, indicating its potential involvement in aerobic decomposition and interactions with other microbial communities. Understanding its physiological traits could provide insights into the roles of similar marine bacteria in biogeochemical cycles, particularly in relation to organic matter processing and the overall health of marine ecosystems. Future research may reveal more about its specific interactions within these environments, emphasizing the importance of such microbes in maintaining ecological balance in marine habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Planktomarina Planktomarina temperata Gram-negative rod aerobic 25 mesophilic non-spore-forming 666509 NZ_CP003984.1 Bac0003874 Acidilobus saccharovorans 345-15 "Acidilobus saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15) is an obligate anaerobic, organotrophic, thermoacidophilic crenarchaeon isolated from a hot spring of Uzon Caldera, Kamchatka, Russia. It grows with a range of pH from 2.5 to 5.8 with an optimum at 3.5 to 4 and a temperature range from 60 to 90 degrees Celsius with an optimum at 80 to 85 degrees Celsius. A. saccharovorans utilizes a wide range of proteinaceous and carbohydrate substrates and cannot grow lithoautotrophically on H2 and CO2. S0 and thiosulfate stimulate growth and are reduced to H2S, but protons cannot serve as electron acceptors, since no H2 is produced during growth in the absence of S0. It encodes numerous hydrolytic enzymes and metabolic pathways necessary for the utilization and complete mineralization of organic substrates in its natural habitat, acidic hot springs. It contains 14 genes encoding esterases and genes encoding a complete beta-oxidation pathway, suggesting the ability of A. saccharovorans to utilize triacylglycerides and longchain fatty acids available from the environment. The wide distribution of A.saccharovorans in acidic hot springs suggest an important role of Acidilobales in microbial communities of such habitats, closing the anaerobic carbon cycle through complete mineralization of organic substrates via S0 respiration. (Adapted from PMID: 20581186). (HAMAP: ACIS3)" Thermoproteati Thermoproteota Thermoprotei Acidilobales Acidilobaceae Acidilobus Acidilobus saccharovorans 345-15 Cocci No 1 1 Anaerobic 80 Hyperthermophilic Fresh water-Hot spring Free living No 666510 NC_014374.1 Bac0003875 Rhodanobacter denitrificans str. 2APBS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter denitrificans 666685 NC_020541.1 Bac0003876 Bacillus sp. 1NLA3E Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 1NLA3E 666686 NC_021171.1 Bac0003877 Thermodesulfatator indicus DSM 15286 Thermodesulfatator indicus DSM 15286. This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfatatoraceae Thermodesulfatator Thermodesulfatator indicus DSM 15286 Gram-negative Bacilli No Anaerobic 70 Chemolithoautotroph Thermophilic Aquatic Free living Chains- Pairs Nonsporulating 667014 NC_015681.1 Bac0003878 Edwardsiella anguillarum ET080813 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella anguillarum 667120 NZ_CP006665.1 Bac0003879 Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 "Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884 is a Gram-negative, rod-shaped bacterium that typically exists in a variety of cellular arrangements, including singles, pairs, and chains. As a nonsporulating organism, it does not form spores and is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is a chemoheterotroph, relying on organic compounds as its energy source, which aligns with its habitat being host-associated. ↵↵Optimal growth of K. pneumoniae subsp. rhinoscleromatis occurs at 37°C, a temperature that is consistent with the physiological conditions found in mammalian hosts. The adaptability of this bacterium to different oxygen levels and its ability to utilize various organic substrates suggest its potential for persistence in diverse microenvironments within host tissues. ↵↵Understanding the traits of K. pneumoniae subsp. rhinoscleromatis, particularly its facultative anaerobic metabolism and host-associated habitat, may provide insights into its ecological roles in the human microbiome and its interactions with the immune system. This adaptability underscores the complexity of host-microbe relationships and may influence future research on microbial dynamics in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 667127 ACZD00000000.1 Bac0003880 Thermoplasmatales archaeon I-plasma Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon I-plasma 667138 ATMD00000000.1 Bac0003881 Tenacibaculum dicentrarchi Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum dicentrarchi 669041 OENB00000000.1 Bac0003882 Sediminibacterium magnilacihabitans str. DSM 22423 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium magnilacihabitans 669455 PVEQ00000000.1 Bac0003883 Cryobacterium arcticum str. PAMC 27867 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium arcticum 670052 NZ_CP016282.1 Bac0003884 Litoreibacter janthinus "Litoreibacter janthinus is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This organism exhibits the typical characteristics of Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane that may contain lipopolysaccharides, contributing to its structural integrity and potential interactions with its environment.↵↵The preference for an aerobic lifestyle suggests that L. janthinus plays a role in environments where oxygen is readily available, potentially participating in various biochemical cycles that require oxygen for metabolic processes. The optimal temperature of 25.0°C indicates that this bacterium is well-adapted to moderate thermal conditions, which may be reflective of its natural habitat, possibly in coastal or marine settings where temperatures are generally stable and conducive to microbial life.↵↵Given these traits, L. janthinus may be involved in nutrient cycling in its ecosystem, contributing to the decomposition of organic matter and the cycling of essential elements. Its specific ecological niche remains to be fully elucidated, but its aerobic nature and thermal preferences suggest potential interactions with other marine microorganisms and a role in maintaining the balance of microbial communities. This adaptability to particular environmental conditions underscores the importance of studying such organisms to understand their contributions to ecosystem dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Litoreibacter Litoreibacter janthinus Gram-negative rod non-motile aerobic 25 mesophilic 670154 FOYO00000000.1 Bac0003885 Oceanithermus profundus DSM 14977 "Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) is an moderately thermophilic, organotrophic, microaerophilic, facultatively chemolithotrophic, Gram-positive bacterium isolated from a deep-sea hydrothermal vent site at 13 degrees N in the East Pacific Rise. Cells are Gram-negative, non-motile rods. The organism grows in the temperature range between 40 and 68 degrees Celsius, with an optimum at 60 degrees Celsius, and in the pH range is between 5.5-8.4, with an optimum around pH 7.5. The NaCl concentration for growth is in the range 10-50 g/l, with an optimum at 30 g/l. O. profundus grows chemoorganoheterotrophically with carbohydrates, proteinaceous substrates, organic acids and alcohols using oxygen or nitrate as electron acceptor. Alternatively, it is able to grow lithoheterotrophically with molecular hydrogen as the energy source. (Adapted from PMID: 12807196). (EBI Integr8)" Thermotogati Deinococcota Deinococci Thermales Thermaceae Oceanithermus Oceanithermus profundus DSM 14977 Negative Bacilli No 1 1 Microaerophilic 60 Chemoorganoheterotroph- Lithoheterotroph- Organotroph Thermophilic Deep sea- Hydrothermal vent- Marine Free living Nonsporulating No 670487 NC_014753.1 Bac0003886 Metallosphaera yellowstonensis MK1 Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera yellowstonensis 671065 AHKJ00000000.1 Bac0003887 Planktothrix serta PCC 8927 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix serta 671068 CZCU00000000.2 Bac0003888 Planktothrix tepida PCC 9214 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix tepida 671072 CZDF00000000.1 Bac0003889 Adlercreutzia caecimuris "Adlercreutzia caecimuris is a Gram-positive, non-spore-forming rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This organism is notable for its anaerobic metabolism, indicating a reliance on fermentation or other anaerobic pathways for energy production. The rod shape suggests a level of structural rigidity that may be advantageous for colonization in specific environments, particularly in the anaerobic niches of the gastrointestinal tract, although the specific ecological role of Adlercreutzia caecimuris remains to be fully elucidated.↵↵The preference for a temperature of 37.0°C aligns with the typical body temperature of warm-blooded hosts, hinting at a potential association with mammalian microbiomes. While the absence of sporulation indicates that this microbe may not endure extreme conditions as effectively as spore-forming bacteria, its adaptation to anaerobic environments suggests a specialized niche that could be critical for maintaining gut health or influencing microbial community dynamics.↵↵Future research may uncover the specific metabolic pathways utilized by Adlercreutzia caecimuris, as well as its interactions within the microbial ecosystem it inhabits. Understanding these interactions could provide insights into its role in health and disease, particularly in the context of the gastrointestinal microbiome." Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Adlercreutzia caecimuris Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 671266 SSTJ00000000.1 Bac0003890 Actinopolyspora alba Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora alba 673379 FOMZ00000000.1 Bac0003891 Vibrio harveyi 1DA3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi 673519 ACZC00000000.1 Bac0003892 Candidatus Aciduliprofundum sp. MAR08-339 Methanobacteriati Thermoplasmatota Candidatus Aciduliprofundum Candidatus Aciduliprofundum sp. MAR08-339 673860 NC_019942.1 Bac0003893 Bacteroides faecis "Bacteroides faecis is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in all body sites of various species, including the gastrointestinal tract, respiratory tract, and skin, and is an Obligate Anaerobe. As a Gram-negative microbe, Bacteroides faecis has a unique outer membrane composed of lipopolysaccharides, which provides protection against environmental stresses. Its rod-shaped morphology allows for efficient movement and colonization in its host environment. The mesophilic temperature preference of Bacteroides faecis enables it to thrive in temperatures ranging from 20-45°C, making it well-suited for growth in the human body. As a Chemoheterotroph, Bacteroides faecis relies on external sources of organic compounds for energy and carbon, breaking down complex molecules into simpler ones for sustenance. Its presence in all body sites of various species highlights its adaptability and ability to coexist with its hosts. The obligate anaerobic nature of Bacteroides faecis means that it requires the absence of oxygen to survive, making it well-suited for growth in the oxygen-poor environments of the gut and other bodily sites. Bacteroides faecis plays a crucial role in the breakdown of complex polysaccharides and production of short-chain fatty acids, which are essential for maintaining a healthy gut microbiome. The ability of Bacteroides faecis to produce enzymes that degrade mucin, a key component of the gut mucosal barrier, allows it to interact intimately with its host and influence the immune system." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides faecis Negative Anaerobe 674529 QSVL00000000.1 Bac0003894 Rugositalea oryzae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rugositalea Rugositalea oryzae 674703 NZ_CP007440.1 Bac0003895 Pseudonocardia benzenivorans CB1190 "Pseudonocardia benzenivorans CB1190 is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions and is isolated from fresh water, particularly within sludge environments. This microbe is characterized by its non-spore-forming nature, making it reliant on favorable conditions for survival and proliferation. Its optimal growth temperature is around 30.0°C, indicating a preference for moderate thermal environments commonly found in natural water bodies.↵↵The habitat of Pseudonocardia benzenivorans CB1190 suggests its potential role in the microbial communities of freshwater ecosystems, particularly in the degradation of organic materials present in sludge. The presence of this organism in such environments may indicate its involvement in biogeochemical cycling processes, particularly in the breakdown of complex organic compounds. Further research could elucidate its specific metabolic pathways and interactions with other microorganisms in these habitats, thereby contributing to a better understanding of microbial dynamics in freshwater ecosystems." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia dioxanivorans Positive rod Aerobic 30 Mesophilic Fresh water - Sludge Free living non-spore-forming 675635 NC_015314.1 Bac0003896 Grimontia hollisae CIP 101886 "Grimontia hollisae CIP 101886 is a gram-negative, rod-shaped bacterium that thrives in mesophilic conditions, with a temperature preference of around 30-37°C. This microbe is classified as a chemoheterotroph, utilizing organic compounds as both energy and carbon sources. It has been primarily isolated from marine environments, particularly in association with various fish species and sediment, showcasing its adaptability and ecological role within aquatic ecosystems. In terms of oxygen requirements, Grimontia hollisae is categorized as a facultative anaerobe, enabling it to survive in both oxygen-rich and oxygen-depleted environments. The gram-negative staining indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which includes lipopolysaccharides. This structural distinction is critical for its pathogenicity and interactions within its environment, influencing its resistance to antibiotics and highlighting its ecological versatility. As a rod-shaped bacterium, Grimontia hollisae exhibits motility that aids in colonization and nutrient acquisition in dynamic marine settings. Grimontia hollisae's role as a chemoheterotroph is vital in nutrient cycling within its habitat, as it breaks down organic matter, contributing to the overall health of marine ecosystems. Its facultative anaerobic nature allows it to exploit varying oxygen conditions, supporting its survival and proliferation in diverse locales, from well-oxygenated waters to oxygen-depleted sediments. Notably, Grimontia hollisae is part of a broader family of bacteria that includes various species important for bioremediation and aquaculture. Its ability to engage in complex microbial interactions within its environment underscores its significance in marine biology and ecology, making it an important focus for studies on bacterial diversity and marine health." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Grimontia Grimontia hollisae Negative Facultative anaerobe 675812 ADAQ00000000.1 Bac0003897 Vibrio orientalis CIP 102891 = ATCC 33934 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio orientalis 675816 AFWH00000000.1 Bac0003898 Hoylesella timonensis CRIS 5C-B1 "Hoylesella timonensis CRIS 5C-B1 is a Gram-negative, nonsporulating anaerobic bacterium classified as a chemoheterotroph, reflecting its reliance on organic compounds for energy and carbon. This microbe has been identified in diverse habitats, suggesting a broad ecological adaptability. Its anaerobic metabolism indicates a preference for environments devoid of oxygen, which is a key factor in its ecological niche.↵↵As a nonsporulating organism, Hoylesella timonensis CRIS 5C-B1 may have developed strategies for survival and proliferation in anaerobic conditions, possibly involving the fermentation of organic substrates. The capacity to thrive in multiple habitats implies that this bacterium can exploit various ecological niches, potentially contributing to nutrient cycling in anaerobic environments.↵↵The adaptability of Hoylesella timonensis CRIS 5C-B1 to different habitats, coupled with its anaerobic nature, may play a significant role in its interactions with other microorganisms and its contribution to microbial community dynamics. Such traits highlight the importance of understanding the ecological roles of anaerobic bacteria in diverse environments, particularly in the context of organic matter degradation and energy flow within ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella timonensis Negative No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 679189 ADEF00000000.1 Bac0003899 Lactobacillus gasseri 224-1 "Lactobacillus gasseri 224-1 is a Gram-positive, rod-shaped bacterium that typically forms chains or exists as singular cells. This strain is classified as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments, which may enhance its adaptability within diverse host-associated habitats. Optimal growth for L. gasseri 224-1 occurs at a temperature of 25.0°C, suggesting a preference for moderate thermal conditions that may be reflective of its natural ecosystems.↵↵As a member of the Lactobacillus genus, this strain is likely involved in the fermentation processes, contributing to the maintenance of a balanced microbiota in its host. Its presence in host-associated environments may play a role in promoting gut health and influencing metabolic functions. The ability to thrive in various oxygen conditions further supports its potential as a versatile probiotic candidate.↵↵The ecological insight provided by the growth characteristics of L. gasseri 224-1 underscores its possible roles in microbial communities, particularly in relation to nutrient cycling and interaction with host physiology, which may have implications for both health and disease management. Further studies could elucidate the specific contributions of this strain to its host's microbiome and metabolic processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains - Singles 679196 ADFT00000000.1 Bac0003900 Alloprevotella rava F0323 "Alloprevotella rava F0323 is a Gram-negative, ovoid-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0 °C. This microbe is part of the diverse microbiota found in various environments, although specific ecological niches have not been detailed in the current data. Its anaerobic nature suggests that it plays a role in environments where oxygen is limited, potentially contributing to the fermentation processes occurring in these settings. ↵↵Given its optimal growth temperature of 37.0 °C, which coincides with the human body temperature, Alloprevotella rava F0323 may be well-adapted to colonizing mucosal surfaces within warm-blooded hosts. This trait could indicate a potential association with the gastrointestinal tract microbiome, where it may participate in the breakdown of complex carbohydrates and affect host metabolism. Further research into the ecological functions and interactions of Alloprevotella rava F0323 could provide valuable insights into its role in maintaining microbial balance and health in anaerobic habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Alloprevotella Alloprevotella rava Gram-negative ovoid non-motile anaerobic 37 mesophilic 679199 ACZK00000000.1 Bac0003901 Johnsonella ignava ATCC 51276 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Johnsonella Johnsonella ignava 679200 ACZL00000000.1 Bac0003902 Centipeda infelix ATCC 43532 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas infelix 679201 ACZM00000000.1 Bac0003903 Escherichia coli MS 145-7 "Escherichia coli MS 145-7 is a Gram-negative, rod-shaped bacterium that typically exists in single or paired arrangements. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, suggesting a close association with host organisms. As a facultative anaerobe, E. coli MS 145-7 is capable of surviving in both aerobic and anaerobic environments, allowing it to adapt to a variety of conditions within its host habitat. ↵↵The host-associated lifestyle of this microbe indicates its potential role in the microbiota of its hosts, contributing to various biological processes, including digestion and metabolism. The ability to thrive in the diverse oxygen levels within host tissues further underscores the adaptability of E. coli MS 145-7. ↵↵Understanding the ecological and biological roles of this strain may provide insights into its interactions within the host microbiome, highlighting the complex relationships that exist between microorganisms and their hosts. Such insights can enhance our understanding of microbial ecology and the potential contributions of specific strains to host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 679204 ADWS00000000.1 Bac0003904 Methanolacinia petrolearia DSM 11571 "Methanolacinia petrolearia DSM 11571 is a coccoid-shaped anaerobic bacterium that typically occurs in pairs or as single cells, thriving in aquatic environments. This microbe is notable for its capacity to utilize methanol as a carbon source, reflecting its adaptation to an anaerobic lifestyle in habitats where methanol may be available, such as in the sediment of water bodies or in association with organic matter degradation. ↵↵The anaerobic nature of Methanolacinia petrolearia suggests that it plays a role in the biogeochemical cycling of carbon within its aquatic habitat, potentially contributing to the processes of methanogenesis and organic matter decomposition. Its ability to exist in pairs may also indicate a form of social interaction or cooperative behavior, which could enhance its survival in fluctuating environmental conditions. ↵↵Furthermore, the specific adaptation of this organism to an aquatic, anaerobic environment positions it as a potential candidate for biotechnological applications, particularly in the fields of environmental microbiology and bioenergy, where anaerobic processes are crucial. Understanding the metabolic pathways and ecological roles of Methanolacinia petrolearia could provide insights into the microbial dynamics of aquatic ecosystems and the potential for harnessing such organisms for sustainable practices." Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanolacinia Methanolacinia petrolearia Cocci No 1 1 Anaerobic Mesophilic Aquatic Free living Pairs - Singles 679926 NC_014507.1 Bac0003905 Alistipes finegoldii DSM 17242 "Alistipes finegoldii DSM 17242 is classified as a mesophile, a chemoheterotrophic organism that produces energy through fermentation, is Gram-negative, rod-shaped, predominantly resides in the human gut, and is an obligate anaerobe. This bacterium thrives at moderate temperatures, ideally between 20°C and 45°C, which aligns with the human body temperature, making it well-suited for its ecological niche. As a chemoheterotroph, A. finegoldii relies on organic compounds from its environment for energy, engaging in fermentation processes to generate adenosine triphosphate (ATP). The Gram-negative nature of A. finegoldii is indicative of its cell wall structure, which contains a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This feature not only influences its pathogenic potential but also its interaction with the host immune system. The rod shape of the microbe aids in its motility within the dense microbial community of the gut, enabling effective colonization and nutrient acquisition. Predominantly found in the human gastrointestinal tract, A. finegoldii plays a pivotal role in maintaining gut health and homeostasis. Its obligate anaerobic lifestyle means it thrives in environments devoid of oxygen, which is characteristic of the human intestine, where it interacts with other gut microbiota to contribute to digestion and metabolic processes. Recent studies have indicated that A. finegoldii may be involved in the metabolism of certain dietary components, potentially influencing host metabolism and immune responses. Furthermore, its presence or absence has been linked to various health conditions, suggesting a role in maintaining the balance of the gut microbiome. Ongoing research into A. finegoldii may reveal more about its contributions to human health and disease, underscoring its importance in the field of microbiology and gut health research." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes finegoldii Negative Anaerobe 679935 NC_018011.1 Bac0003906 Chryseobacterium culicis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium culicis 680127 PCPP00000000.1 Bac0003907 Streptomyces scabiei 87.22 Streptomyces scabiei 87.22. Streptomyces scabiei 87.22 will be used for comparative analysis with other plant pathogenic actinomycetes. (NCBI BioProject: bp_list[1]) Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces scabiei 87.22 Positive Tailed Yes Aerobic Mesophilic Terrestrial Free living Sporulating Yes 680198 NC_013929.1 Bac0003908 Diaphorobacter sp. J5-51 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter sp. J5-51 680496 JSYI00000000.1 Bac0003909 Corynebacterium pseudotuberculosis C231 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudotuberculosis 681645 NC_017301.2 Bac0003910 Granulicella mallensis MP5ACTX8 "Granulicella mallensis MP5ACTX8 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. This microorganism is characterized by its non-spore-forming nature, which suggests that it may rely on other survival strategies under unfavorable environmental conditions. ↵↵The Gram-negative classification indicates that G. mallensis possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may contribute to its resilience in diverse habitats. Its rod shape is typical of many environmental bacteria, facilitating movement and nutrient uptake in various substrates. ↵↵The optimal temperature of 25.0°C aligns with a mesophilic lifestyle, indicating that G. mallensis is likely adapted to moderate temperature environments, potentially including soil and aquatic ecosystems. The aerobic requirement implies that this bacterium plays a role in oxygen-rich environments, where it may engage in various metabolic processes that contribute to nutrient cycling.↵↵Understanding the physiological traits of Granulicella mallensis MP5ACTX8 can provide insights into its ecological role, especially in environments where aerobic processes are crucial. Its adaptation to specific temperature and oxygen levels may make it a significant player in biogeochemical cycles, particularly in regions where organic matter decomposition occurs under aerobic conditions." Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella mallensis Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 682795 NC_016631.1 Bac0003911 Azospirillum ramasamyi Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum ramasamyi 682998 NZ_CP029835.1 Bac0003912 Flavobacterium haoranii "Flavobacterium haoranii is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 29.0°C. This species belongs to the genus Flavobacterium, which is characterized by its diverse ecological roles and presence in various aquatic environments.↵↵As a member of the Flavobacteriaceae family, Flavobacterium haoranii is expected to contribute to the degradation of organic matter in its natural habitats, potentially playing a role in nutrient cycling within aquatic ecosystems. Its aerobic nature suggests that it relies on oxygen for its metabolic processes, likely influencing its distribution and interactions with other microbial communities in oxygen-rich environments.↵↵The optimal growth temperature of 29.0°C indicates a preference for moderately warm conditions, which may align with its habitat in freshwater or marine environments, particularly in regions with stable temperatures. The rod shape and Gram-negative cell wall structure of Flavobacterium haoranii are typical features of many bacteria within this genus, suggesting adaptations that facilitate survival in diverse ecological niches.↵↵Understanding the traits of Flavobacterium haoranii may provide insights into its potential applications in biotechnology and environmental management, especially in bioremediation efforts where aerobic, organic matter-decomposing bacteria are essential. Overall, the ecological significance of Flavobacterium haoranii is underscored by its role in shaping microbial communities and influencing biogeochemical processes in aquatic systems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium haoranii Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 683124 FQZH00000000.1 Bac0003913 Candidimonas nitroreducens str. SC-089 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Candidimonas Candidimonas nitroreducens aerobic 683354 NJIH00000000.1 Bac0003914 Agrococcus carbonis Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus carbonis 684552 NZ_LT629734.1 Bac0003915 Lactococcus lactis subsp. lactis KF147 "Gram-positive, AT-rich, facultatively anaerobic nonmotile bacterium. Different strains are used in milk industry mostly for production of cheese starters. It is also found in new products like ""fresh cheese"", to which it gives its characteristic taste, in kefir and even in some Asian vegetable products, as well as in fermented meats. It is also one of the most popular laboratory microorganisms for studies of lactic acid bacteria physiology. (HAMAP: LACLA)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis KF147 Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating No 684738 NC_013657.1 Bac0003916 Helicobacter pylori 52 "Helicobacter pylori 52 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives in microaerophilic conditions, indicating a requirement for reduced oxygen levels for optimal growth. H. pylori 52 is typically found in host-associated habitats, suggesting a close association with its host organisms. The optimal growth temperature for this strain is approximately 37.0°C, which corresponds to the average body temperature of mammals, further emphasizing its adaptation to a host environment.↵↵Helicobacter pylori is well-known for its role in gastrointestinal microbiota, particularly in the human stomach, where it can survive the acidic conditions. This adaptability is facilitated by various physiological and biochemical mechanisms that allow it to colonize the gastric mucosa. Understanding the specific traits of H. pylori 52 can provide insights into its ecological niche and potential interactions within its host. ↵↵The microaerophilic nature of H. pylori 52 suggests that it may play a role in maintaining the delicate balance of the gastrointestinal microbiome, potentially influencing host health and disease processes. Its ability to thrive at body temperature and within the host environment underscores the complex relationships that exist between microbes and their hosts, highlighting the importance of studying such organisms to better understand microbial ecology and host interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 684950 NC_017354.1 Bac0003917 Pseudanabaena sp. ABRG5-3 Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Pseudanabaena Pseudanabaena sp. ABRG5-3 pond 685565 NZ_AP017565.1 Bac0003918 Bartonella rochalimae ATCC BAA-1498 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella rochalimae microaerophile 685782 AHPK00000000.1 Bac0003919 Micromonospora haikouensis str. JXNU-1 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora haikouensis 686309 JXSX00000000.1 Bac0003920 Methylomicrobium album BG8 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomicrobium Methylomicrobium album 686340 NZ_CM001476.1 Bac0003921 Martelella sp. AD-3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Martelella Martelella sp. AD-3 686597 NZ_CP014275.1 Bac0003922 Bombiscardovia coagulans Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bombiscardovia Bombiscardovia coagulans anaerobic 686666 MWWS00000000.1 Bac0003923 Algoriphagus faecimaris Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus faecimaris 686796 FNAC00000000.1 Bac0003924 Saccharomonospora piscinae str. 06168H-1 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora piscinae 687388 VCEK00000000.1 Bac0003925 Pseudothermotoga thermarum DSM 5069 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga thermarum anaerobic 688269 NC_015707.1 Bac0003926 Paracoccus sphaerophysae "Paracoccus sphaerophysae is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival. The Gram-negative nature of P. sphaerophysae suggests that it possesses a characteristic outer membrane, which may contribute to its interactions with the surrounding environment and its resilience to certain antimicrobial agents.↵↵While the specific ecological niche of Paracoccus sphaerophysae is not detailed in the available traits, its aerobic requirement indicates a potential role in biogeochemical cycles, particularly in oxygen-rich habitats. The genus Paracoccus is known for its metabolic versatility, which may include roles in nitrogen fixation or the degradation of organic compounds, although these specific capabilities are not confirmed for P. sphaerophysae. ↵↵Understanding the physiological traits of this bacterium can provide insights into its ecological functions and interactions within microbial communities. The adaptability of P. sphaerophysae to specific environmental conditions suggests it may play a role in nutrient cycling processes, potentially influencing soil health or other ecosystems where it is found. Further research could elucidate its potential contributions to microbial diversity and ecosystem dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sphaerophysae Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 690417 JRKS00000000.1 Bac0003927 Sphingobium chlorophenolicum L-1 Sphingobium chlorophenolicum L-1.No project description provided. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium chlorophenolicum L-1 Negative Bacilli No Aerobic Mesophilic Soil Free living 690566 NC_015594.1 Bac0003928 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvibacter Desulfocurvibacter africanus 690850 NC_016629.1 Bac0003929 Terrimicrobium sacchariphilum str. NM-5 Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sacchariphilum 690879 BDCO00000000.1 Bac0003930 Lutibacter flavus "Lutibacter flavus is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. As a member of the microbial community, L. flavus exhibits characteristics typical of aerobic bacteria, including reliance on oxygen for metabolic processes. ↵↵The rod shape of L. flavus may contribute to its adaptability in various ecological niches, potentially allowing it to exploit different substrates in aerobic environments. Given its optimal temperature, this microbe likely inhabits environments that experience moderate temperatures, such as soil or aquatic systems, where it can participate in nutrient cycling and interact with other microbial species.↵↵Understanding the physiological traits of Lutibacter flavus can provide insights into its role in the ecosystem, particularly in relation to carbon and nitrogen cycling. The bacterium's ability to thrive in aerobic conditions suggests that it may play a significant role in the degradation of organic matter, contributing to the maintenance of ecological balance in its habitat. Further studies on its metabolic pathways could elucidate its specific functions within microbial communities and its potential applications in biotechnology or environmental science." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lutibacter Lutibacter flavus Gram-negative rod non-motile aerobic 29 mesophilic 691689 FZNX00000000.1 Bac0003931 Tsuneonella dongtanensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Tsuneonella Tsuneonella dongtanensis 692370 NZ_CP016591.1 Bac0003932 Brucella sp. BO2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella sp. BO2 693750 ADFA00000000.1 Bac0003933 Deinococcus proteolyticus MRP "Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) is an aerobic, non-motile, Gram-positive bacterium. The cells are spherical and the colonies are orange-red. D. proteolyticus is resistant to 1.5 Mrad of gamma radiation. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41911). (EBI Integr8)" Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus proteolyticus MRP Positive Cocci No 1 1 Aerobic Mesophilic HostAssociated Free living Lama glama No 693977 NC_015170.1 Bac0003934 Bacteroides helcogenes P 36-108 "Bacteroides helcogenes P 36-108 is a mesophilic, chemoheterotrophic, gram-negative, rod-shaped bacterium that is obligately anaerobic and primarily found in the human gut and various animal intestines. This microbe thrives optimally at moderate temperatures, typically between 20-45°C, which categorizes it as a mesophile. Its chemoheterotrophic metabolism indicates that it derives its energy from organic compounds, using them as both carbon and energy sources, which is critical for its survival in nutrient-rich environments such as the intestines. As a gram-negative bacterium, Bacteroides helcogenes P 36-108 possesses a thin peptidoglycan layer surrounded by an outer membrane, which contributes to its resilience in hostile environments within the gut. The rod shape facilitates motility and colonization within the complex gut microbiome, allowing it to effectively navigate through the viscous intestinal contents. Primarily residing in the gastrointestinal tracts of humans and various animals, Bacteroides helcogenes plays a significant role in the digestion of complex carbohydrates, aiding in the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Its obligate anaerobic nature means it thrives in environments devoid of oxygen, making it well-suited to the oxygen-poor conditions of the gut. This microbe has been studied for its potential role in health and disease, particularly in relation to gut microbiota balance and its influence on metabolic processes. It may contribute to immune system modulation and has implications in understanding conditions such as obesity, inflammatory bowel diseases, and other metabolic disorders. Its adaptability and functional capacity within the gut microbiome underscore its significance in both ecological and clinical contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides helcogenes P 36-108 Negative Rod No 1 2 Anaerobic Mesophilic HostAssociated Free living Sus scrofa Nonsporulating Yes 693979 NC_014933.1 Bac0003935 Methylobacterium oryzae CBMB20 "Methylobacterium oryzae CBMB20 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and a non-spore-forming nature. This microbe thrives at an optimal temperature of approximately 29.0°C, indicating a preference for moderately warm environments typical of various soil and plant-associated habitats. ↵↵As a member of the Methylobacterium genus, M. oryzae CBMB20 is expected to utilize one-carbon compounds, such as methanol, which are often derived from plant exudates. The aerobic requirement of this bacterium suggests that it plays a role in the cycling of carbon in environments rich in organic material, particularly in association with plant roots. ↵↵The specific non-spore-forming characteristic indicates that M. oryzae CBMB20 may rely on its ability to proliferate under favorable conditions rather than entering a dormant state, which could affect its survival strategies in fluctuating environments. Understanding the physiological traits and ecological roles of Methylobacterium oryzae CBMB20 could provide insights into its potential applications in agriculture, particularly in promoting plant growth or bioremediation processes in nutrient-rich soils." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium oryzae Gram-negative rod aerobic 29 mesophilic non-spore-forming 693986 NZ_CP003811.1 Bac0003936 Desulfovibrio carbinoliphilus subsp. oakridgensis str. FW1012B "Desulfovibrio carbinoliphilus subsp. oakridgensis str. FW1012B is a Gram-negative, rod-shaped bacterium that requires anaerobic conditions for growth. As a non-spore-forming microbe, this strain is adapted to thrive in oxygen-depleted environments, where it plays a significant role in the biogeochemical cycling of sulfur and carbon. ↵↵The genus Desulfovibrio is known for its ability to perform dissimilatory sulfate reduction, a process that utilizes sulfate as a terminal electron acceptor, thereby reducing it to hydrogen sulfide. This metabolic capability positions D. carbinoliphilus subsp. oakridgensis as a participant in anaerobic ecosystems, particularly in environments such as sediments and the gastrointestinal tracts of certain animals, where organic matter decomposition is prevalent. ↵↵Given its anaerobic nature, this strain may contribute to the degradation of organic compounds, which can be crucial for nutrient cycling in its native habitat. Understanding the metabolic pathways and ecological roles of D. carbinoliphilus subsp. oakridgensis can provide insights into microbial interactions and the dynamics of anaerobic ecosystems. Additionally, its specific adaptations may serve as a model for investigating microbial life in extreme environments where oxygen is limited." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio carbinoliphilus Gram-negative rod anaerobic non-spore-forming 694327 ADFE00000000.2 Bac0003937 Natronococcus occultus SP4 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus occultus 694430 NC_019974.1 Bac0003938 Desulforamulus ruminis DSM 2154 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulforamulus Desulforamulus ruminis 696281 NC_015589.1 Bac0003939 Escherichia coli UMNK88 "Escherichia coli UMNK88 is a microorganism that belongs to the E. coli species, a prominent and well-studied bacterium. According to the Microbe Directory, this strain has a temperature preference category of ""mesophilic"", meaning it thrives in moderate temperatures ranging from 20 to 40°C. E. coli UMNK88 is a chemo-heterotroph, able to metabolize organic compounds as its energy source, as it is a facultative anaerobe, meaning it can grow both in the presence and absence of oxygen. Its energy production is primarily achieved through the breakdown of glucose and other organic molecules. E. coli UMNK88 is a Gram-negative bacterium, with an outer membrane consisting of lipopolysaccharides, which provides an additional layer of protection against antibiotics and other substances. Its shape is typical of E. coli, being a rod-shaped bacterium, with a specific length and width. It is found in the human gastrointestinal tract, as well as other body sites such as the urinary tract, respiratory tract, and skin. In terms of oxygen preference, E. coli UMNK88 is a facultative anaerobe, able to grow in both aerobic and anaerobic conditions. This microbe is one of the most well-studied bacteria in the world, with a wealth of knowledge on its genetic makeup, physiology, and behavior. E. coli UMNK88 is a key model organism for understanding the physiology and biochemistry of bacteria, and has been used extensively in scientific research, particularly in the fields of molecular biology and biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 696406 NC_017642.1 Bac0003940 Vibrio owensii str. 170302 "Vibrio owensii str. 170302 is a Gram-negative bacterium known to inhabit marine environments, specifically within the Changjiang estuary, where it associates with coral-associated macroalgae in the intertidal zone. This bacterium displays facultative anaerobic respiration, allowing it to thrive in varying oxygen conditions typical of its ecological niche.↵↵The ability of V. owensii str. 170302 to adapt to both aerobic and anaerobic environments suggests a metabolic versatility that might be advantageous in fluctuating conditions often encountered in intertidal zones. This adaptability may enable the bacterium to efficiently utilize available nutrients and maintain its ecological role within the symbiome of macroalgae and corals. Understanding the physiological traits of V. owensii str. 170302 could provide insights into its interactions within the coastal ecosystem, particularly in relation to nutrient cycling and the health of coral-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio owensii negative 1 facultative anaerobe Changjiang estuary; coral-associated macroalgae symbiome; intertidal zone; Marine Animal 696485 NZ_CP033137.1 Bac0003941 Arthrospira platensis NIES-39 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Sirenicapillariaceae Limnospira Limnospira platensis 696747 NC_016640.1 Bac0003942 Actinobacillus suis H91-0380 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus suis microaerophile 696748 NC_018690.1 Bac0003943 Planktotalea frisia str. SH6-1 "Planktotalea frisia strain SH6-1 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism, thriving optimally at a temperature of 25.0°C. This organism is characterized by its rod-like morphology, which is typical of many members within the broader context of environmental bacteria. The aerobic nature of Planktotalea frisia indicates that it requires oxygen for its growth and metabolic processes, which may influence its habitat preferences and interactions within its ecosystem.↵↵The optimal growth temperature of 25.0°C suggests that this strain is well-suited for mesophilic environments, which typically include temperate aquatic systems or soil environments where moderate temperatures prevail. While specific ecological roles of Planktotalea frisia str. SH6-1 are not detailed, its traits indicate a potential involvement in nutrient cycling, particularly in aerobic environments where it may participate in the decomposition of organic materials or the mineralization of nutrients.↵↵An intriguing aspect of Planktotalea frisia str. SH6-1 is its adaptation to aerobic conditions, which may position it as a key player in the microbial community dynamics of its niche, particularly in balancing oxygen levels and organic matter decomposition. This adaptability highlights the interconnectedness of microbial life and its fundamental roles in maintaining ecosystem health and function." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Planktotalea Planktotalea frisia Gram-negative rod aerobic 25 mesophilic 696762 MLCB00000000.1 Bac0003944 Methylobacter tundripaludum SV96 "Methylobacter tundripaludum SV96 is a Gram-negative, coccoid bacterium characterized as a chemoheterotroph that thrives optimally at 20.0°C. This microbe is nonsporulating, which suggests a reliance on stable environmental conditions for survival and growth. Its habitat is primarily soil, indicating a role in terrestrial ecosystems, possibly contributing to nutrient cycling and organic matter decomposition.↵↵As a chemoheterotroph, M. tundripaludum SV96 utilizes organic compounds as both its carbon and energy sources, differentiating it from autotrophic microorganisms that rely on inorganic materials. This metabolic strategy allows the organism to exploit a variety of organic substrates found in soil environments, potentially enhancing its adaptability to varying soil compositions and conditions.↵↵The Gram-negative cell wall structure of M. tundripaludum SV96 may confer specific advantages in its soil habitat, such as resistance to certain environmental stressors and the ability to engage in complex interactions with other soil microorganisms. Given its nonsporulating nature, the bacterial population may exhibit rapid growth and turnover in environments where conditions remain favorable, but this may also limit its survival in extreme or fluctuating environments.↵↵Overall, Methylobacter tundripaludum SV96 exemplifies a specialized microbial player in soil ecosystems, likely participating in the intricate web of microbial interactions and contributing to the overall functionality and health of soil environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylobacter Methylobacter tundripaludum Negative Cocci No 1 20 Chemoheterotroph Soil Nonsporulating 697282 AEGW00000000.2 Bac0003945 Paenibacillus larvae subsp. larvae DSM 25430 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae 697284 NC_023134.1 Bac0003946 Thermoanaerobacter wiegelii Rt8.B1 Thermoanaerobacter wiegelii Rt8.B1. Thermoanaerobacter wiegelii Rt8.B1 was isolated from a freshwater hot spring and will be used for comparative analysis with other thermophilic bacteria. (NCBI BioProject: PRJNA52581) Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter wiegelii Rt8.B1 Positive Bacilli Yes Obligate anaerobic Thermophilic Hot spring- Fresh water Free living Sporulating 697303 NC_015958.1 Bac0003947 Streptomyces sp. Cmuel-A718b Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Cmuel-A718b 697328 FMDG00000000.1 Bac0003948 Thermofilum adornatum 1505 Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum adornatum 697581 NZ_CP007493.1 Bac0003949 Streptomyces turgidiscabies Car8 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces turgidiscabies 698760 AEJB00000000.1 Bac0003950 Rhizobium tropici CIAT 899 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella tropici 698761 NC_020061.1 Bac0003951 Kushneria konosiri str. X49 "Kushneria konosiri strain X49 is a Gram-negative, rod-shaped bacterium that demonstrates optimal growth at a temperature of 16.0°C and exhibits aerobic respiration. This microbe is characterized by its rod morphology, which is typical within the class of bacteria to which it belongs. As an aerobic organism, K. konosiri str. X49 requires oxygen for its metabolic processes, highlighting its adaptation to environments where oxygen is readily available.↵↵The specific temperature preference of 16.0°C suggests that K. konosiri str. X49 may thrive in cooler environments, potentially influencing its distribution and ecological niches. Such temperature sensitivity could indicate a role in biogeochemical processes in colder aquatic habitats or regions with moderate climates.↵↵The understanding of K. konosiri str. X49's physiological traits is crucial for further studies on its ecological functions and potential applications in biotechnology. Given its aerobic nature and optimal growth temperature, this bacterium may contribute to nutrient cycling in cooler ecosystems, potentially participating in the degradation of organic matter or influencing the dynamics of microbial communities in specific environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Kushneria Kushneria konosiri Gram-negative rod aerobic 16 psychrotolerant 698828 NZ_CP021323.1 Bac0003952 Sinorhizobium meliloti BL225C "Sinorhizobium meliloti BL225C is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and demonstrates aerobic metabolic activity. This microbe is part of a diverse habitat range, indicating its adaptability to various environmental conditions. As an aerobic organism, S. meliloti BL225C requires oxygen for its growth and energy production, which suggests its involvement in processes that may contribute to soil health and nutrient cycling.↵↵Given its classification within the Sinorhizobium genus, this strain is likely to have symbiotic relationships with leguminous plants, particularly those in the Medicago genus, such as alfalfa. Such interactions typically involve the formation of root nodules, where the bacterium fixes atmospheric nitrogen, thereby enhancing the nitrogen availability in the soil. This relationship is crucial for agricultural systems, particularly in promoting sustainable practices by reducing the need for synthetic nitrogen fertilizers.↵↵Understanding the specific traits of S. meliloti BL225C not only sheds light on its physiological requirements but also highlights its potential role in improving soil fertility and supporting plant growth in diverse ecosystems. The adaptability of this strain to multiple habitats underlines its ecological significance, particularly in agroecosystems where nitrogen fixation is essential for sustainable crop production." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 698936 NC_017324.1 Bac0003953 Thermoanaerobacterium thermosaccharolyticum M0795 "Thermoanaerobacterium thermosaccharolyticum M0795 is a rod-shaped, nonsporulating bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic conditions. This microbe is predominantly found in the extreme environments of hot springs, where it plays a role in the degradation of organic matter. As an anaerobe, T. thermosaccharolyticum M0795 is adapted to environments devoid of oxygen, utilizing a variety of organic substrates for energy and growth.↵↵The rod morphology of T. thermosaccharolyticum M0795 is indicative of its phylogenetic affiliations within the broader group of thermophilic bacteria, which are known for their heat-stable enzymes and metabolic pathways. Its ability to thrive in high-temperature habitats suggests a potential for biotechnological applications, particularly in processes such as bioenergy production and bioremediation, where high-temperature conditions are prevalent.↵↵In the context of its natural habitat, T. thermosaccharolyticum M0795 may contribute to the cycling of nutrients and the breakdown of complex organic compounds in geothermal ecosystems. This activity underlines the importance of such microorganisms in maintaining the ecological balance within these extreme environments, highlighting their potential role in biogeochemical cycles." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium thermosaccharolyticum Rod No 1 Anaerobic Chemoheterotroph Thermophilic Hot spring Nonsporulating 698948 NC_019956.1 Bac0003954 Gardnerella vaginalis 284V "Gardnerella vaginalis 284V is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments. This microbe is categorized as a chemoheterotroph, relying on organic compounds for energy and growth. The optimal growth temperature for G. vaginalis 284V is approximately 37.0°C, which aligns with its typical habitat within host-associated environments, particularly in the human urogenital tract.↵↵G. vaginalis is known to inhabit the vaginal microbiome, where it plays a role in the complex interplay of microbial communities. While the specific ecological interactions and contributions of G. vaginalis 284V to host health or disease are not detailed here, its presence in the host-associated environment underscores its potential significance in maintaining the balance of the vaginal microbiota. The ability of this organism to thrive in anaerobic conditions suggests that it may engage in metabolic processes that could influence the local microenvironment and interactions with other microbial species.↵↵Understanding the traits of G. vaginalis 284V can provide insights into its ecological role and the dynamics of microbial communities in the human body, potentially illuminating how variations in its population could impact host health and disease states." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 698950 ADEL00000000.1 Bac0003955 Gardnerella vaginalis 0288E "Gardnerella vaginalis 0288E is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions and is classified as a chemoheterotroph. This microbe grows optimally at a temperature of 37.0°C, which aligns well with the average human body temperature, suggesting its adaptation to host-associated environments. ↵↵G. vaginalis is primarily found in the vaginal microbiota, where it plays a role in the complex interactions of microbial communities. The species is known to be involved in the maintenance of vaginal health, though imbalances in its population can be associated with conditions such as bacterial vaginosis. ↵↵The anaerobic nature of G. vaginalis indicates its reliance on fermentation processes for energy production, which may influence its interactions with other microbial species present in the vaginal ecosystem. Understanding the metabolic pathways and ecological roles of G. vaginalis can provide insights into its contributions to host health and the dynamics of microbial communities within the human body. Additionally, the adaptation of G. vaginalis to host-associated environments highlights the intricate relationship between human physiology and microbial life, emphasizing the importance of maintaining microbial balance for overall health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 698952 ADEN00000000.1 Bac0003956 Gardnerella vaginalis 6420B "Gardnerella vaginalis 6420B is a Gram-positive, nonsporulating rod-shaped bacterium, primarily identified as a chemoheterotroph with an optimal growth temperature of 37.0°C. This microbe is typically associated with host environments, indicating its role in specific ecological niches within the human body. As an anaerobic organism, Gardnerella vaginalis 6420B thrives in low-oxygen conditions, which are commonly found in the vaginal microbiome, where it coexists with a diverse array of other microbial species.↵↵The characteristics of Gardnerella vaginalis 6420B reflect its adaptation to a host-associated habitat, suggesting a potential role in maintaining the balance of the vaginal microbiota. It metabolizes organic compounds derived from the host or other microorganisms, thus playing a part in the complex interactions within the vaginal ecosystem. Understanding the traits of Gardnerella vaginalis 6420B can offer insights into the dynamics of microbial populations and their contributions to host health, particularly in relation to maintaining a healthy vaginal environment. Further research is warranted to explore its interactions with other microbes and its potential influence on the overall microbial community structure." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 698954 ADEP00000000.1 Bac0003957 Gardnerella lacydonensis Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella lacydonensis 698956 ADER00000000.1 Bac0003958 Enterococcus faecalis R712 "Enterococcus faecalis R712 is a Gram-positive coccus that thrives optimally at a temperature of 37.0°C, indicating its adaptation to warm-blooded hosts. This organism is classified as a chemoorganotroph, utilizing organic compounds as its primary energy source, which allows it to thrive in diverse environments. Enterococcus faecalis R712 exhibits facultative anaerobic metabolism, enabling it to grow in both the presence and absence of oxygen, which contributes to its versatility in various habitats.↵↵The ability of Enterococcus faecalis R712 to occupy multiple habitats suggests a high degree of ecological adaptability. This trait may play a significant role in its survival and proliferation in fluctuating environmental conditions, such as those encountered in human-associated microbiomes or in nature. Furthermore, its facultative anaerobic nature may facilitate its persistence in both aerobic and anaerobic niches, potentially allowing the organism to exploit a wide range of ecological resources. This adaptability underscores the importance of Enterococcus faecalis R712 in microbial communities, where it may contribute to nutrient cycling and interact with other microbial populations." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 699186 ADDQ00000000.1 Bac0003959 Mageeibacillus indolicus UPII9-5 "Mageeibacillus indolicus UPII9-5 is a fascinating microorganism that thrives in a temperature range of 25-37°C, categorizing it as a mesophile. This microbe is a chemoheterotroph, deriving its energy from the breakdown of organic compounds. Specifically, it produces energy through aerobic respiration, utilizing oxygen as the final electron acceptor. Mageeibacillus indolicus UPII9-5 is a gram-positive bacterium, characterized by its typical rod-shaped morphology. Its cells are typically 0.5-1.0 μm in width and 1.5-3.0 μm in length. This bacterium has been isolated from various body sites, including the skin, respiratory tract, gastrointestinal tract, and female genital tract, of humans and animals. This microbe is an obligate aerobe, requiring the presence of oxygen to survive. In fact, it is sensitive to even low levels of oxygen and will not thrive in anaerobic environments. Its ability to produce indole, a breakdown product of tryptophan, has been linked to its role in the human gut microbiome. In addition to its ecological significance, Mageeibacillus indolicus UPII9-5 has been studied for its potential applications in biotechnology. For instance, its ability to produce indole and other aromatic compounds has made it a valuable tool in the production of fragrances, detergents, and pharmaceuticals. Further research on Mageeibacillus indolicus UPII9-5 has revealed its potential as a probiotic, exhibiting anti-inflammatory and antimicrobial properties that could aid in the prevention and treatment of various diseases. Its unique metabolic pathways and physiological characteristics make it an attractive subject for further investigation, holding promise for the discovery of novel therapeutic agents and bioproducts." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Mageeibacillus Mageeibacillus indolicus Rod No 1 1 HostAssociated 699246 NC_013895.2 Bac0003960 Halolamina pelagica Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halolamina Halolamina pelagica 699431 FOXI00000000.1 Bac0003961 Halobellus limi str. Halobellus limi strain CGMCC 1.10331 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus limi 699433 NZ_CP031311.1 Bac0003962 Streptomyces zinciresistens K42 "Streptomyces zinciresistens K42 is a Gram-positive, spore-forming bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. As a member of the genus Streptomyces, this microbe demonstrates the characteristic filamentous morphology associated with many soil-dwelling actinobacteria. The ability to form spores allows S. zinciresistens K42 to withstand adverse environmental conditions, promoting its survival and dissemination in various habitats.↵↵The aerobic nature of this organism suggests that it plays a significant role in the biogeochemical cycling of nutrients, particularly in oxygen-rich environments where it may contribute to the decomposition of organic matter. Furthermore, the optimal temperature of 29.0°C indicates that S. zinciresistens K42 is well-adapted to moderately warm environments, which may influence its ecological niches and interactions with other microbial communities.↵↵While specific ecological interactions and metabolic pathways have not been detailed, the traits of S. zinciresistens K42 suggest potential roles in soil health and nutrient cycling, positioning it as a key player in the maintenance of ecosystem functions. Further studies could elucidate its specific contributions to microbial diversity and soil ecology, enhancing our understanding of its biological significance." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces zinciresistens Gram-positive aerobic 29 mesophilic spore-forming 700597 AGBF00000000.1 Bac0003963 Niastella koreensis GR20-10 "Niastella koreensis GR20-10 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic capabilities and does not form spores. This organism thrives optimally at a temperature of 32.0 °C, suggesting a preference for moderate thermal conditions that could be relevant in its natural habitat. The Gram-negative classification indicates that N. koreensis GR20-10 possesses a distinctive cell wall structure characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions with the environment and other microorganisms.↵↵The non-sporulating nature of this bacterium suggests that it may rely on alternative survival strategies under unfavorable conditions, potentially including metabolic versatility or the formation of biofilms. The aerobic requirement indicates that N. koreensis GR20-10 is dependent on oxygen for growth and metabolism, which may limit its ecological niche to well-oxygenated environments.↵↵Given these traits, N. koreensis GR20-10 may play a significant role in the microbiological processes of its ecosystem, particularly in the degradation of organic materials or the cycling of nutrients in aerobic environments. Its adaptation to moderate temperatures and oxygen availability may contribute to its ecological success in specific habitats, highlighting the importance of microbial diversity in maintaining ecosystem health." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niastella Niastella koreensis Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 700598 NC_016609.1 Bac0003964 [Enterobacter] lignolyticus SCF1 "Enterobacter lignolyticus SCF1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This species is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. Its habitat primarily includes soil, where it likely interacts with a diverse array of microbial communities and contributes to soil ecology.↵↵The ability of E. lignolyticus SCF1 to adapt to both aerobic and anaerobic environments suggests a versatile metabolic capability, which may involve the degradation of complex organic compounds. Given the genus Enterobacter’s known associations with the degradation of lignocellulosic materials, E. lignolyticus SCF1 may play a role in the breakdown of plant-derived substances within its soil habitat. This could have implications for nutrient cycling and the maintenance of soil health, as the decomposition of organic material is crucial for the replenishment of soil nutrients.↵↵Understanding the metabolic pathways and ecological roles of E. lignolyticus SCF1 could provide insights into its potential applications in bioremediation or agricultural practices aimed at enhancing soil quality and promoting sustainable land use. Further research into its interactions with other soil microbes and its specific metabolic capabilities will be essential for elucidating its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter [Enterobacter] lignolyticus Negative Rod Yes 2 Facultative Mesophilic Soil Free living Singles Nonsporulating 701347 NC_014618.1 Bac0003965 Pediococcus claussenii ATCC BAA-344 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus claussenii 701521 NC_017017.1 Bac0003966 Novosphingobium sp. PP1Y "Novosphingobium sp. PP1Y is a marine bacteria specifically adapted to use fuels as energy source. It is able to grow on a wide range of mono-, poly- and heterocyclic aromatic hydrocarbons. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. PP1Y sp. PP1Y Negative Bacilli Yes Obligate aerobic Mesophilic HostAssociated Free living 702113 NC_015579.1 Bac0003967 Methylomonas koyamae str. R-45383 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas koyamae 702114 LUUK00000000.1 Bac0003968 Pseudomonas arsenicoxydans str. ACM1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas arsenicoxydans aerobic 702115 NZ_CP024767.1 Bac0003969 Centipeda noxia F0398 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas noxia 702437 ADGH00000000.1 Bac0003970 Segatella oulorum F0390 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella oulorum 702438 ADGI00000000.1 Bac0003971 Phocaeicola vulgatus PC510 "Phocaeicola vulgatus PC510 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement and is classified as an anaerobe. This microbe is host-associated, suggesting a symbiotic relationship with its host organism, potentially contributing to the host's microbiome dynamics. ↵↵As an anaerobic organism, P. vulgatus PC510 thrives in environments devoid of oxygen, which is characteristic of many gut-associated microbes. Understanding the specific conditions under which this bacterium operates can illuminate its role within the host's gastrointestinal tract, where it may participate in various metabolic processes, including fermentation. ↵↵The presence of P. vulgatus PC510 in the host-associated environment highlights the complex interactions that occur within microbial communities and their significance in maintaining host health. Further exploration of this bacterium's functional roles and interactions could yield insights into its contributions to nutrient metabolism and host immune modulation, underscoring the importance of anaerobic microbes in health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 702446 ADKO00000000.1 Bac0003972 Listeria marthii FSL S4-120 "Listeria marthii FSL S4-120 is a Gram-positive, rod-shaped bacterium characterized by its microaerophilic oxygen requirement and non-spore-forming nature. This organism thrives optimally at a temperature of 32.0°C, suggesting a potential adaptation to specific environmental niches that may include moderate thermal conditions. ↵↵As a member of the genus Listeria, which is known for its ability to inhabit diverse environments, Listeria marthii FSL S4-120 may contribute to microbial communities in habitats where low oxygen levels are prevalent. The microaerophilic lifestyle indicates that this bacterium may play a role in anaerobic or low-oxygen ecosystems, possibly engaging in metabolic processes that are beneficial for nutrient cycling in such environments. ↵↵Further research into the ecological roles and interactions of Listeria marthii FSL S4-120 could provide insights into its contributions to microbial diversity and ecosystem functioning, particularly in relation to its optimal growth conditions and oxygen preferences. Understanding these dynamics may reveal the potential significance of this strain within its native habitat and its interactions with other microbial species." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria marthii Gram-positive rod microaerophile 32 mesophilic non-spore-forming 702457 ADXF00000000.1 Bac0003973 Myroides marinus Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides marinus 703342 FNYS00000000.1 Bac0003974 Myroides marinus str. L41 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides marinus 703342 LQNU00000000.1 Bac0003975 Flavobacterium dankookense str. DSM 25687 "Flavobacterium dankookense str. DSM 25687 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. This organism is part of the Flavobacterium genus, which is known for its versatility in various ecological niches, particularly in aquatic environments. ↵↵The Gram-negative characteristic of F. dankookense indicates the presence of a thin peptidoglycan layer and an outer membrane, which could confer specific advantages in its survival and adaptability to different habitats. As an aerobic organism, it relies on oxygen for its metabolic processes, suggesting a potential role in biogeochemical cycles, particularly in environments where oxygen is readily available.↵↵Given these traits, F. dankookense may play a significant role in the decomposition of organic matter in aquatic ecosystems, contributing to nutrient cycling and the maintenance of ecological balance. The optimal growth temperature of 25.0°C suggests that it could be particularly well-suited to temperate environments, where such conditions are prevalent. Further studies could elucidate its specific contributions to microbial communities and its interactions with other microorganisms within its habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium dankookense Gram-negative rod non-motile aerobic 25 mesophilic 706186 SNXR00000000.1 Bac0003976 Solobacterium moorei F0204 "Solobacterium moorei F0204 is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites across different species, including the skin, respiratory tract, and gastrointestinal tract, of humans and animals, making it a ubiquitous presence in multiple hosts. As a Chemoheterotroph, Solobacterium moorei F0204 relies on organic compounds for energy and carbon, obtaining these essential nutrients by breaking down complex molecules. This microbe's rod shape allows it to navigate through tight spaces and interact with its environment effectively. Its mesophilic nature enables it to grow best in moderate temperatures, typically between 20-45°C, making it well-suited to inhabit various ecological niches. Solobacterium moorei F0204 is also a Facultative Anaerobe, capable of surviving in both aerobic and anaerobic conditions, which enhances its adaptability to different environments. This flexibility allows it to thrive in diverse settings, from the oxygen-rich skin surface to the oxygen-poor gut. The microbe's ability to inhabit multiple body sites and its adaptability to various oxygen levels contribute to its widespread presence in different species. Notably, Solobacterium moorei F0204 has been linked to human skin conditions, such as acne and psoriasis, where it can contribute to the development of disease by modulating the immune response and altering the skin microbiome." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Solobacterium Solobacterium moorei Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 706433 AECQ00000000.1 Bac0003977 Pseudomonas flexibilis str. JCM 14085 "Pseudomonas flexibilis strain JCM 14085 is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, characterizing it as an aerobic organism. This strain belongs to the genus Pseudomonas, which is known for its metabolic versatility and ability to thrive in diverse environments. The rod shape is typical of this genus, which often exhibits a range of morphological adaptations allowing for survival in fluctuating conditions.↵↵As an aerobic microbe, Pseudomonas flexibilis str. JCM 14085 utilizes oxygen for its metabolic processes, which may confer advantages in oxygen-rich environments such as soil, water, and various ecological niches where organic matter is present. The ability of Pseudomonas species to degrade a wide array of organic compounds further suggests that strain JCM 14085 may play a role in biogeochemical cycles, particularly in the decomposition of organic materials.↵↵Research into this strain could provide insights into its potential applications in bioremediation, as members of the Pseudomonas genus are often studied for their ability to break down pollutants. Additionally, the metabolic pathways utilized by Pseudomonas flexibilis str. JCM 14085 may shed light on the ecological roles of aerobic bacteria in nutrient cycling and their interactions within microbial communities. Understanding these dynamics is essential for harnessing the beneficial traits of this microbe in environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas flexibilis Gram-negative rod aerobic 706570 JTAK00000000.1 Bac0003978 Jeotgalibaca dankookensis str. EX-07 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca Jeotgalibaca dankookensis 708126 NZ_CP019728.1 Bac0003979 Aurantimicrobium minutum str. type strain KNC Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aurantimicrobium Aurantimicrobium minutum 708131 NZ_AP017457.1 Bac0003980 Sulfuricurvum kujiense DSM 16994 "Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) is a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing, Gram-positive bacterium isolated from an underground crude-oil storage cavity at Kuji in Iwate, Japan. The cells are motile, curved rods and had a single polar flagellum. Optimum growth occurs in a low-strength salt medium at pH 7.0 and 25 degrees Celsius. It utilizes sulfide, elemental sulfur, thiosulfate and hydrogen as the electron donors and nitrate as the electron acceptor under anaerobic conditions, but it does not use nitrite. Oxygen also serves as the electron acceptor under the microaerobic condition (O(2) in the head space 1 %). It does not grow on sugars, organic acids or hydrocarbons as carbon and energy sources. (Adapted from PMID: 15545474). (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum kujiense DSM 16994 Negative Bacilli No 1 1 Anaerobic 25 Chemolithoautotroph Mesophilic Free living Nonsporulating No 709032 NC_014756.1 Bac0003981 Fructobacillus tropaeoli "Fructobacillus tropaeoli is a Gram-positive, rod-shaped bacterium known for its ability to thrive at an optimal temperature of 29.0°C. This microbe is part of the diverse group of lactic acid bacteria, which are recognized for their role in fermentation processes. The Gram-positive nature of F. tropaeoli suggests a thick peptidoglycan layer in its cell wall, a characteristic that may confer certain advantages in terms of resilience and stability in various environments.↵↵The optimal growth temperature of 29.0°C indicates that F. tropaeoli is well-suited to mesophilic conditions, which are common in many natural and anthropogenic ecosystems. This adaptability may allow the organism to participate in fermentation processes associated with plant materials, potentially contributing to the production of organic acids and various metabolites that influence microbial community dynamics and plant health.↵↵F. tropaeoli's specific adaptations to its environment make it a candidate for further investigation in studies of biotechnological applications, especially in the fermentation of plant-based substrates. Its ecological role may extend to interactions with other microorganisms in its habitat, as well as its potential contributions to soil health and plant microbiomes. Overall, understanding the traits of Fructobacillus tropaeoli could provide insights into its functional roles in fermentation and ecosystem dynamics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructobacillus Fructobacillus tropaeoli Gram-positive rod non-motile 29 mesophilic 709323 BBXT00000000.1 Bac0003982 Azospirillum sp. TSA2s str. TSA2S Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSA2s 709810 NZ_CP039651.1 Bac0003983 Micromonospora noduli "Micromonospora noduli is a Gram-positive, aerobic bacterium known for its spore-forming capabilities. It thrives optimally at a temperature of 29.0°C and utilizes organic compounds as an energy source, categorizing it as an organotrophic chemotroph. This microorganism is part of the diverse genus Micromonospora, which is notable for its role in the production of various bioactive compounds and its potential applications in biotechnology.↵↵The ability to form spores is significant, as it allows M. noduli to survive in fluctuating environmental conditions. The aerobic nature of this microbe suggests that it plays a crucial role in soil ecosystems, particularly in the degradation of organic matter and the cycling of nutrients. Its metabolic versatility enables it to exploit various organic substrates, which may contribute to its ecological niche in soil environments.↵↵Understanding the specific ecological roles of Micromonospora noduli can provide insights into microbial interactions within soil microbiomes, particularly in relation to its contributions to organic matter decomposition and nutrient availability. These traits highlight the importance of M. noduli not only in natural ecosystems but also in potential biotechnological applications, where its metabolic processes could be harnessed for organic waste management and soil health enhancement." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora noduli Gram-positive non-motile aerobic 29 organotroph; chemotroph mesophilic spore-forming 709876 PYAA00000000.1 Bac0003984 Micromonospora zamorensis "Micromonospora zamorensis is a Gram-positive, aerobic actinobacterium recognized for its ability to form spores. This characteristic is significant as it enables the organism to survive in various environmental conditions, thereby contributing to its resilience in habitats where nutrient availability may fluctuate. The Gram-positive nature of M. zamorensis suggests a robust cell wall structure, which is indicative of its classification within the Actinobacteria phylum. ↵↵As a spore-forming bacterium, M. zamorensis likely employs sporulation as a means of reproduction and survival, allowing it to endure adverse conditions such as desiccation or nutrient scarcity. Its aerobic requirement indicates that it relies on oxygen for metabolic processes, which may influence its distribution and ecological interactions within its environment.↵↵In summary, the combination of Gram-positive characteristics, spore formation, and aerobic metabolism positions Micromonospora zamorensis as a significant player in its ecological niche, potentially contributing to the cycling of nutrients in soil or decaying organic matter. This insight emphasizes the role of such microorganisms in maintaining ecosystem balance and highlights their potential utility in biotechnological applications, particularly in bioremediation or the production of bioactive compounds." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora zamorensis Gram-positive non-motile aerobic spore-forming 709883 NZ_LT607755.1 Bac0003985 Deinococcus maricopensis DSM 21211 "Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) is an aerobic, radiation-resistant, Gram-positive bacterium isolated from the Sonoran Desert soil, Arizona, USA. It is resistant to high doses of ionizing radiation. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/43461). (HAMAP: DEIML)" Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus maricopensis Positive Cocci No 1 1 Aerobic Chemoorganotroph Mesophilic Soil Free living Nonsporulating No 709986 NC_014958.1 Bac0003986 Frankia sp. QA3 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. QA3 710111 NZ_CM001489.1 Bac0003987 Helicobacter suis HS5 "Helicobacter suis HS5 is a Gram-negative, curved or spiral-shaped bacterium known for its distinct morphology within the Helicobacter genus. This microbe is non-spore-forming, which indicates a reliance on vegetative growth for survival and replication. The curved or spiral shape of H. suis HS5 potentially contributes to its motility and ability to navigate through viscous environments, such as those found within the gastrointestinal tract of its hosts.↵↵As a member of the Helicobacter genus, H. suis HS5 shares common features with other species in the group, including a preference for microaerobic conditions, which suggests that it thrives in environments with lower oxygen levels. While specific pathogenicity data for H. suis HS5 are not provided, the genus is known for its association with various gastrointestinal conditions in different hosts, which may imply potential interactions with host immune responses.↵↵The ecological niche of H. suis HS5 may be particularly relevant in understanding its role in its native habitat, possibly influencing gastrointestinal health and microbiota composition. The presence of such a microbe in the gut may provide insights into host-microbe interactions, especially in relation to the maintenance of gut homeostasis and the potential modulation of local immune responses. Further studies on H. suis HS5 could elucidate its ecological significance and functional roles within the gastrointestinal microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter suis Gram-negative curved/spiral non-spore-forming 710394 ADHO00000000.1 Bac0003988 Mycolicibacterium chubuense NBB4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium chubuense 710421 NC_018022.1 Bac0003989 Mycolicibacterium rhodesiae NBB3 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium rhodesiae 710685 NC_016604.1 Bac0003990 Actinomyces sp. oral taxon 414 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 414 712122 NZ_CP012590.1 Bac0003991 Dietzia sp. oral taxon 368 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia sp. oral taxon 368 712270 NZ_CP027238.1 Bac0003992 Leptotrichia sp. oral taxon 212 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212 712357 NZ_CP012410.1 Bac0003993 Selenomonas sp. oral taxon 126 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 126 712528 NZ_CP016201.1 Bac0003994 Streptococcus sp. oral taxon 064 "Streptococcus sp. oral taxon 064 is a coccoid bacterium that is part of the diverse microbiota found in the human oral cavity. Characterized by its spherical shape, this microbe is likely to play a role in the complex interactions that occur within oral ecosystems. Streptococcus species are commonly associated with the formation of dental biofilms, which are critical for maintaining oral health and homeostasis.↵↵While specific pathogenic traits and ecological roles of Streptococcus sp. oral taxon 064 are not detailed, the presence of such cocci in the oral microbiome suggests that they may contribute to microbial community dynamics, influencing both microbial diversity and metabolic processes in the mouth. As a member of the oral microbiota, this taxon may interact with other microbial species, potentially participating in nutrient cycling and influencing the overall health of the oral environment.↵↵Current research emphasizes the significance of oral bacteria in maintaining health and preventing disease, highlighting the importance of understanding the roles of specific taxa like Streptococcus sp. oral taxon 064. Furthermore, its presence in the oral cavity underscores the intricate balance between beneficial and potentially harmful microorganisms, suggesting that even cocci may have nuanced roles in oral health and disease states. Further investigation into its specific interactions and functions within the oral microbiome could provide valuable insights into the overall ecology of oral health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. oral taxon 064 Cocci 712624 NZ_CP016207.1 Bac0003995 Tannerella serpentiformis Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella serpentiformis 712710 NZ_CP028365.1 Bac0003996 Tannerella sp. oral taxon 808 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella sp. oral taxon 808 712711 MIQB00000000.1 Bac0003997 Pantoea vagans C9-1 "Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple (Malus x domestica ""Jonathan"", MI, USA). P. vagans is an important biocontrol agent that is registered in the United States and Canada as Blight Ban C9-1. It is one of the most effective commercial agents against fire blight, a major threat to global pome fruit production caused by the related enterobacterium Erwinia amylovora. Applied during bloom, P. vagans provides effective disease control, similar to oxytetracycline and slightly lower than streptomycin treatments. It is generally considered as nonpathogenic, because it lacks virulence determinants such as type III secretion systems (T3SS), while some contain a T3SS described as a nonpathogenic type. Several Pantoea species are yellow pigmented due to production of carotenoids and the carotenoid biosynthesis is encoded on plasmid pPag3. (Adapted from PMID: 20952567 and 20487014). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea vagans C9-1 Negative Rod No 1 2 Facultative Mesophilic HostAssociated Free living Malus x domestica Nonsporulating No 712898 NC_014561.1 Bac0003998 Rhodococcus sp. Chr-9 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. Chr-9 713612 JTIZ00000000.1 Bac0003999 Fructilactobacillus sanfranciscensis TMW 1.1304 "Fructilactobacillus sanfranciscensis TMW 1.1304 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in dairy environments. As a chemoheterotroph, this microbe primarily derives its energy from organic compounds, making it an important player in the fermentation processes associated with dairy products. It exhibits a facultative anaerobic growth pattern, allowing it to adapt to varying oxygen levels, which is advantageous in its natural habitat where anaerobic conditions may prevail during fermentation.↵↵Optimal growth for F. sanfranciscensis occurs at a temperature of 30.0°C, suggesting a preference for mild conditions typical of many dairy fermentation processes. This temperature range aligns with its ecological niche, where it likely contributes to the development of flavor and texture in dairy products through its metabolic activities.↵↵Given its isolation from dairy, F. sanfranciscensis plays a significant role in the microbial community of fermented dairy products, potentially influencing both the organoleptic qualities and the preservation of these foods. Its ability to function effectively under varying oxygen conditions highlights its adaptability and underscores its importance in maintaining microbial diversity within dairy ecosystems. This adaptability may also allow it to interact synergistically with other microbial species during fermentation, thereby enhancing the overall quality of fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus sanfranciscensis Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 714313 NC_015979.1 Bac0004000 Mucilaginibacter paludis DSM 18603 "Mucilaginibacter paludis DSM 18603 is a Gram-negative, rod-shaped bacterium that does not form spores and exhibits facultative aerobic/anaerobic metabolism. This microbe thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a heterotroph, Mucilaginibacter paludis relies on organic compounds as its energy source, which suggests it plays a role in the decomposition of organic matter within its habitat.↵↵The facultative nature of its oxygen requirement allows Mucilaginibacter paludis to adapt to varying oxygen levels, making it versatile in different ecological niches. This adaptability may enable it to thrive in both oxygen-rich and oxygen-poor environments, contributing to its survival in diverse habitats, possibly including soils, sediments, or other organic-rich substrates.↵↵Understanding the metabolic capabilities and environmental tolerances of Mucilaginibacter paludis can provide insights into its potential roles in nutrient cycling and organic matter degradation in ecosystems where it is present. Its ability to function in varying oxygen conditions may also suggest a significant role in biogeochemical processes, particularly in environments that undergo periodic anoxia." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter paludis Gram-negative rod non-motile facultative aerobe/anaerobe 25 heterotroph mesophilic non-spore-forming 714943 AEIH00000000.2 Bac0004001 Paenibacillus vortex V453 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus vortex 715225 ADHJ00000000.1 Bac0004002 Asticcacaulis biprosthecum C19 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis biprosthecium 715226 ADUH00000000.1 Bac0004003 Enterobacter cloacae subsp. cloacae ATCC 13047 "Enterobacter cloacae subsp. cloacae ATCC 13047 is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, classified as a chemoheterotroph and facultative anaerobe. This organism is part of the Enterobacter genus, typically found in various environments, including soil, water, and the intestinal tracts of humans and animals. As a gram-negative organism, E. cloacae exhibits a characteristic cell wall structure that consists of a thin peptidoglycan layer sandwiched between two membranes. This feature not only influences its staining properties but also contributes to its resistance against certain antibiotics. The rod shape of the bacterium allows it to navigate efficiently through various environments, and its mesophilic temperature preference indicates an optimal growth range of approximately 30-37°C, aligning with human body temperatures, which is significant for its role in human health and disease. Being a chemoheterotroph, E. cloacae derives its energy from organic compounds, which it breaks down through metabolic processes. Its classification as a facultative anaerobe means it can survive in both aerobic and anaerobic conditions, utilizing oxygen when available but also capable of fermentative metabolism in its absence. This adaptability is a critical factor in its survival within diverse ecosystems, including the human gastrointestinal tract where it can be found as part of the normal flora. E. cloacae is increasingly recognized for its role in nosocomial infections, particularly in immunocompromised patients or those with medical devices. It has been linked to urinary tract infections and respiratory tract infections, often demonstrating resistance to multiple antibiotics due to its possession of mobile genetic elements. Moreover, some strains have been studied for their potential in bioremediation, showcasing their ability to metabolize pollutants, thereby highlighting their ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae ATCC 13047 Negative Rod No 2 Aerobe; anaerobe Mesophilic Multiple Free living Homo sapiens Yes 716541 NC_014121.1 Bac0004004 Waddlia chondrophila WSU 86-1044 "This obligatory intracellular bacteria is suspected to be an agent of miscarriage in humans and ruminants. Strain WSU 86-1044 was isolated in 1986 at the Washington Animal Disease Diagnostic Laboratory (hence the genus name) from tissues of a first-trimester aborted bovine foetus; it grows in macrophages as well as in Acanthamoeba castellanii. Unlike other Chlamydia sequenced to date 5% of the genome encodes repetitive sequences; other Chlamydia have almost no repetitive DNA. It encodes a number of virulence factors specific for resistance to host or environmental stresses including a putative carbonate permease, heavy metal exporters and multidrug efflux pumps. It is less metabolically dependent on its host than other Chlamydiae, as it encodes the capacity to synthesize some nucleotides, amino acids, lipids and other cofactors (adapted from PMID 20531937). (EBI Integr8)" Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila WSU 86-1044 Negative No 1 2 HostAssociated Cow Yes 716544 NC_014225.1 Bac0004005 Azospirillum sp. TSO5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSO5 716760 LGQY00000000.1 Bac0004006 Rubricoccus marinus str. SG-29 Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubricoccus Rubricoccus marinus 716817 MQWB00000000.1 Bac0004007 Pseudomonas sp. ICMP 3272 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ICMP 3272 716914 LKEK00000000.1 Bac0004008 Ensifer sojae CCBAU 05684 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sojae 716928 NZ_CP023069.1 Bac0004009 Flexistipes sinusarabici DSM 4947 Flexistipes sinusarabici DSM 4947.This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Flexistipitaceae Flexistipes Flexistipes sinusarabici DSM 4947 Negative Bacilli No Anaerobic Heterotroph Thermophilic Marine Free living Nonsporulating 717231 NC_015672.1 Bac0004010 Thermobacillus composti KWC4 "Thermobacillus composti KWC4 is a Gram-negative, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 45.0°C. This microbe is classified as aerobic, indicating that it requires oxygen for its metabolic processes. The ability to form spores is particularly noteworthy, as it allows T. composti KWC4 to endure unfavorable environmental conditions, thus contributing to its survival in thermophilic environments.↵↵Due to its optimal growth temperature, T. composti KWC4 is likely adapted to high-temperature niches, which may include composting processes where organic materials are decomposed. The thermophilic nature of this bacterium suggests it may play a significant role in the breakdown of complex organic substrates, facilitating nutrient cycling and potentially influencing the microbial community structure within compost ecosystems.↵↵Furthermore, the Gram-negative characteristic of T. composti KWC4 may imply the presence of a complex outer membrane, which can affect its interactions with other microorganisms and the environment. This feature could also be relevant in understanding its metabolic pathways and ecological functions. Overall, the ecological role of Thermobacillus composti KWC4 in thermophilic environments underscores its potential significance in biotechnological applications, particularly in waste management and composting strategies, where efficient degradation of organic matter is essential." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Thermobacillus Thermobacillus composti Gram-negative rod non-motile aerobic 45 thermophilic spore-forming 717605 NC_019898.1 Bac0004011 Paenibacillus curdlanolyticus YK9 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus curdlanolyticus 717606 AEDD00000000.1 Bac0004012 Thiomicrospira aerophila AL3 str. AL2 "Thiomicrospira aerophila AL3 str. AL2 is a pleomorphic microorganism characterized by its star or dumbbell shape, which allows for flexibility in adapting to various environmental conditions. This bacterium is an autotroph, utilizing inorganic substances as its energy source, and is classified as both a lithotroph and chemotroph, indicating its capacity to derive energy through the oxidation of inorganic compounds. T. aerophila AL3 str. AL2 requires oxygen for its metabolic processes, confirming its status as an aerobic organism.↵↵The autotrophic and lithotrophic characteristics suggest that T. aerophila AL3 str. AL2 plays a significant role in biogeochemical cycles, particularly in environments where inorganic substrates are abundant. Its ability to thrive in oxygen-rich environments further underscores its ecological niche, likely involving interactions with other microbial communities in its habitat. This bacterium may contribute to the cycling of sulfur and other elements, highlighting its potential importance in nutrient dynamics within its ecosystem. Overall, the unique shape and metabolic capabilities of T. aerophila AL3 str. AL2 reflect its adaptability and functional significance in aerobic, inorganic-rich environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira aerophila star/dumbbell/pleomorphic aerobic autotroph; lithotroph; chemotroph 717772 NZ_CP007030.1 Bac0004013 Hyphomicrobium sp. MC1 (NCBI BioProject: PRJNA72453) Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium sp. MC1 Aerobic Methylotroph Wastewater- Aquatic- Soil 717785 NC_015717.1 Bac0004014 Litorilituus sediminis str. JCM 17549 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Litorilituus Litorilituus sediminis 718192 NZ_CP034759.1 Bac0004015 Bacillus cereus str. Schrouff "Bacillus cereus strain Schrouff is a Gram-positive, rod-shaped bacterium characterized by its tendency to form chains. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for mesophilic conditions. As an aerobic organism, B. cereus str. Schrouff requires oxygen for its metabolic processes, which aligns with the general metabolic profile of the Bacillus genus.↵↵The habitat of B. cereus str. Schrouff is noted as being multiple, suggesting a versatile ecological niche that may include various environments such as soil, water, and possibly plant-associated habitats. This adaptability could be indicative of its role in nutrient cycling and interactions within microbial communities.↵↵The combination of its Gram-positive nature, rod shape, and aerobic metabolism positions B. cereus str. Schrouff as a significant player in diverse ecosystems, especially those where organic matter decomposition occurs. The ability to form chains may also enhance its survival and colonization strategies in fluctuating environments. Overall, the ecological insights derived from its traits suggest that B. cereus str. Schrouff may contribute to the dynamics of microbial assemblages in its habitats, although further studies would be necessary to clarify its specific roles and interactions within these environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 718221 AHCI00000000.1 Bac0004016 Faecalibacterium prausnitzii L2-6 "Faecalibacterium prausnitzii L2-6 is a bacterium that thrives in a mesophilic environment, with a temperature preference category of 20-45°C. It belongs to the group of heterotrophs, which means it requires an external source of energy, obtained through the breakdown of organic compounds. Specifically, this microbe is a chemoheterotroph, utilizing energy from the oxidation of organic molecules. In terms of energy production, F. prausnitzii L2-6 likely employs anaerobic respiration, generating ATP through the fermentation of carbohydrates. This is consistent with its ability to grow well in the absence of oxygen. The bacterium stains Gram-positive, indicating the presence of a thick peptidoglycan layer in its cell wall. Its shape is typically rod-shaped, with a length of approximately 2-4 μm. F. prausnitzii L2-6 is a strict anaerobe, preferring to grow in environments with low or no oxygen levels. It is unable to survive in aerobic environments and is sensitive to oxygen. As a commensal microbe, F. prausnitzii L2-6 is commonly found in the gastrointestinal tracts of humans and other mammals, where it plays a crucial role in maintaining gut health. It is one of the most abundant species in the human gut microbiome, contributing to the production of short-chain fatty acids and the modulation of the immune response. Notably, F. prausnitzii L2-6 has been linked to various physiological and pathological processes, including the development of obesity, type 2 diabetes, and inflammatory bowel disease. Its dysbiosis has been associated with impaired gut function and increased susceptibility to infections. Research on this microbe has significant implications for the development of novel therapies and diagnostic approaches for gastrointestinal disorders." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Structurally positive but stains negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 718252 NC_021042.1 Bac0004017 Roseburia intestinalis XB6B4 "Roseburia intestinalis XB6B4 is a microorganism that thrives in the human gut, specifically in the large intestine, where it plays a crucial role in breaking down complex carbohydrates and fibers. At the mesophilic temperature range of 24°C to 37°C, this bacterium exhibits a chemoheterotrophic metabolism, meaning it relies on organic compounds as its energy source. It produces energy through the process of fermentation, specifically lactate and acetate fermentation. Roseburia intestinalis XB6B4 is a Gram-positive bacterium, possessing a thick peptidoglycan layer in its cell wall. Its shape is slender and rod-like, often appearing as a long, thin rectangle under a microscope. The microbe is exclusively found in the large intestine, specifically in the colon and rectum, where it contributes to the breakdown of dietary fiber. As a facultative anaerobe, Roseburia intestinalis XB6B4 can survive in both oxygenated and oxygen-depleted environments. It can thrive in the presence of oxygen, but it can also adapt to areas with low oxygen levels. This adaptability allows it to coexist with other microorganisms in the gut, where oxygen levels can vary. One of the key functions of Roseburia intestinalis XB6B4 is its ability to degrade complex plant polysaccharides, such as xylan, cellulose, and pectin. This process involves the production of specific enzymes that break down these carbohydrates, allowing for the release of energy-rich compounds like short-chain fatty acids. In addition to its role in carbohydrate breakdown, Roseburia intestinalis XB6B4 has been found to have antimicrobial properties, producing compounds that inhibit the growth of other pathogens in the gut. Its importance in human health is evident, as alterations in its populations have been linked to various gastrointestinal disorders. Further research on Roseburia intestinalis XB6B4 has the potential to uncover new insights into the complex relationships between microorganisms in the human gut, as well as their impact on human health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia intestinalis Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 718255 NC_021012.1 Bac0004018 Bacillus atrophaeus 1942 "Bacillus atrophaeus 1942.This project will compare modern type strains (e.g. ATCC 9372), strains currently in use within the biodefense community to archival strains of B. atrophaeus to trace the microevolution of B. atrophaeus during more than 70 years of development and use. In addition, this project compares B. atrophaeus subsp. globigii strains to the more distantly related B. atrophaeus subsp. atrophaeus strains. (NCBI BioProject: bp_list[1])" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus atrophaeus 1942 Positive Rod Yes 1 1 Aerobic Mesophilic Soil Free living Sporulating 720555 NC_014639.1 Bac0004019 Lysinibacillus composti str. MCCC 1A12701 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus composti 720633 RRCT00000000.1 Bac0004020 Microcystis aeruginosa PCC 9701 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 721123 CAIQ00000000.1 Bac0004021 Bradyrhizobium lablabi str. CCBAU 23086 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium lablabi 722472 LLYB00000000.1 Bac0004022 Bifidobacterium longum subsp. longum F8 "Bifidobacterium longum subsp. longum F8 is a type of microbe that thrives in a temperature range of 37°C to 42°C, placing it in the category of thermophilic microorganisms. In terms of metabolism, it is a heterotroph, utilizing organic compounds as its energy source to produce ATP through fermentation. This process involves the breakdown of nutrients in the absence of oxygen, releasing lactic acid as a byproduct. Gram-staining reveals that Bifidobacterium longum subsp. longum F8 is a Gram-positive bacterium, characterized by its thick peptidoglycan layer. In terms of shape, this microbe is rod-shaped, with a length of approximately 0.5-1.5 μm. It is capable of inhabiting various body sites, including the gastrointestinal tract, respiratory tract, and skin. The oxygen preference of Bifidobacterium longum subsp. longum F8 is that of a facultative anaerobe, meaning it can survive and grow in both aerobic and anaerobic environments. As a member of the Bifidobacterium genus, this microbe is known for its beneficial effects on human health. It plays a crucial role in the colonization of the infant gut, aiding in the digestion and absorption of nutrients. Additionally, it has been shown to produce antimicrobial compounds, which can help to suppress the growth of pathogenic bacteria. In summary, Bifidobacterium longum subsp. longum F8 is a thermophilic, fermentative, Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic characteristics. Its ability to thrive in a variety of environments and produce beneficial compounds makes it an important microbe in maintaining human health. Furthermore, its unique properties have led to its potential use as a probiotic in the prevention and treatment of various disorders, including irritable bowel syndrome and allergy." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 722911 NC_021008.1 Bac0004023 Vibrio genomosp. F6 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio genomosp. F6 723172 SYUT00000000.1 Bac0004024 Mycolicibacter algericus DSM 45454 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter algericus 723879 MVHC00000000.1 Bac0004025 Pseudarthrobacter equi Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter equi aerobic 728066 NZ_LT629779.1 Bac0004026 Thalassospira povalilytica str. 139Z-12 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira povalilytica 732237 PGTS00000000.1 Bac0004027 Roseibium suaedae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Roseibium Roseibium suaedae 735517 FRBW00000000.1 Bac0004028 Chryseobacterium oncorhynchi str. 701B-08 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium oncorhynchi aerobic 741074 PPEI00000000.2 Bac0004029 Escherichia coli Xuzhou21 "Escherichia coli Xuzhou21 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells, demonstrating its adaptability to various environments. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of warm-blooded hosts, reflecting its host-associated habitat. As a facultative anaerobe, E. coli Xuzhou21 can utilize oxygen when available but is also capable of fermentative metabolism in anaerobic conditions, allowing it to survive in diverse microenvironments within its host.↵↵The ability of E. coli Xuzhou21 to exist in pairs or as single cells may facilitate its colonization and interaction with host tissues, potentially enhancing its survival and adaptation strategies. Given its optimal growth temperature and metabolic versatility, E. coli Xuzhou21 may play a significant role in the microbiota of its host, where it could contribute to nutrient cycling and the maintenance of intestinal homeostasis. Understanding the specific ecological role of E. coli Xuzhou21 within its host could provide insights into the complex interactions between microbial communities and their hosts, particularly in terms of health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 741093 NC_017907.1 Bac0004030 Delftia sp. Cs1-4 Delftia sp. Cs1-4.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia sp. Cs1-4 Cs1-4 Negative Bacilli No Aerobic Mesophilic Fresh water- Oil fields- Sludge- Soil Free living 742013 NC_015563.1 Bac0004031 Achromobacter piechaudii ATCC 43553 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter piechaudii aerobic 742159 ADMS00000000.1 Bac0004032 Xenorhabdus sp. GDc328 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus sp. GDc328 742178 LGYQ00000000.1 Bac0004033 Barnesiella intestinihominis YIT 11860 "Barnesiella intestinihominis YIT 11860 is a gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, is classified as a chemoheterotroph, and is an obligate anaerobe. This microbe predominantly colonizes the human gastrointestinal tract, where it plays a crucial role in maintaining gut health and can also be found in other body sites such as the oral cavity and feces. As a gram-negative bacterium, Barnesiella intestinihominis has a thin peptidoglycan layer, surrounded by an outer membrane containing lipopolysaccharides, which contribute to its pathogenicity and interactions with the host immune system. The rod-shaped morphology of this microbe is typical of many gut bacteria, allowing for efficient colonization and nutrient absorption within the complex environment of the intestines. Its mesophilic preference indicates that it thrives optimally at moderate temperatures, aligning with the conditions present in the human body. Being a chemoheterotroph, Barnesiella intestinihominis acquires energy by metabolizing organic compounds derived from dietary sources, playing a vital role in the breakdown of complex carbohydrates. As an obligate anaerobe, it can only survive in environments devoid of oxygen, making the anaerobic conditions of the intestines ideal for its growth and proliferation. Research has shown that Barnesiella intestinihominis may have a positive impact on gut health by contributing to the balance of intestinal microbiota. Its presence is associated with various health benefits, including immune modulation and potential protective effects against certain gastrointestinal disorders. Additionally, this microbe may aid in the metabolization of dietary fibers, producing short-chain fatty acids, which are beneficial for colonic health and overall metabolic processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Barnesiella Barnesiella intestinihominis Negative rod non-motile Anaerobe 37 mesophilic non-spore-forming 742726 ADLE00000000.1 Bac0004034 Bacteroides oleiciplenus YIT 12058 "Bacteroides oleiciplenus YIT 12058 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, is classified as a heterotroph, and is an obligate anaerobe, typically found in the gastrointestinal tracts of various mammals. This microbe is a member of the Bacteroidetes phylum, notable for its role in breaking down complex carbohydrates in the human gut as part of its symbiotic relationship with the host.Being Gram-negative, B. oleiciplenus possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can play a role in immune evasion and interaction with host cells. Its rod-shaped morphology allows for efficient movement and colonization within the diverse environments of the gastrointestinal tract, where it contributes significantly to the digestion of fibrous plant materials and the production of short-chain fatty acids, vital for host health. Bacteroides oleiciplenus prefers a mesophilic environment, typically thriving within a temperature range of 30°C to 37°C, which aligns with the conditions found in the mammalian gut. As a heterotroph, it relies on organic compounds from its environment for energy and growth, primarily derived from the diet of the host. This bacterium is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, which influences its metabolic pathways and adaptation strategies within the anaerobic environment of the intestines. Remarkably, Bacteroides oleiciplenus has been studied for its potential applications in biotechnology, particularly in fermentative processes, and its unique genetic makeup could reveal insights into the evolution of gut microbiota and their impact on health and disease. Additionally, the presence of this bacterium in the gut is associated with various metabolic processes that underscore its importance in maintaining a balanced microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides oleiciplenus Negative Anaerobe lower intestinal tract 742727 ADLF00000000.1 Bac0004035 Dialister succinatiphilus YIT 11850 "Dialister succinatiphilus YIT 11850 is a gram-negative, short rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites across different species, including the human oral cavity, gastrointestinal tract, and skin. As an obligate anaerobe, this microbe requires a strict anaerobic environment to survive, which is reflected in its inability to grow in the presence of oxygen. The gram-negative characteristic is indicative of its cell wall structure, which consists of a thin peptidoglycan layer and an outer lipid bilayer containing lipopolysaccharides. The short rod shape allows for efficient movement and nutrient uptake in its environment. As a chemoheterotroph, Dialister succinatiphilus YIT 11850 relies on organic compounds for energy and carbon, which it obtains from its surroundings. Its presence in various body sites suggests a commensal or symbiotic relationship with its host, where it contributes to the breakdown and utilization of complex organic matter. The mesophilic temperature preference of this microbe allows it to thrive in temperatures ranging from 20-45°C, making it well-suited to the human body's normal temperature range. Dialister succinatiphilus YIT 11850 has been found to produce succinic acid as a major metabolic product, which has potential applications in the production of biodegradable plastics and other industrial materials." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister succinatiphilus Negative sphere non-motile Anaerobe 37 mesophilic non-spore-forming 742743 ADLT00000000.1 Bac0004036 Fusobacterium necrophorum subsp. funduliforme 1_1_36S Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum 742814 ADLZ00000000.1 Bac0004037 Sutterella wadsworthensis 2_1_59BFAA Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella wadsworthensis 742823 ADMG00000000.1 Bac0004038 Paenibacillus lactis 154 "Paenibacillus lactis 154 is a gram-positive, rod-shaped bacterium classified as a facultative anaerobe, exhibiting a temperature preference for mesophilic conditions. This microbe thrives optimally in moderate temperatures, usually between 20°C and 37°C. As a heterotroph, *P. lactis 154* obtains its nutrients from organic carbon sources, which it metabolizes to support growth and reproduction.Being gram-positive, *P. lactis 154* possesses a thick peptidoglycan layer in its cell wall that retains the crystal violet stain used during the Gram staining process, imparting a deep purple color. This structural characteristic may contribute to its ability to survive in varied environmental conditions. Its rod shape allows for efficient movement and nutrient absorption, promoting adaptability in diverse habitats.As a facultative anaerobe, *P. lactis 154* can grow in both the presence and absence of oxygen, utilizing aerobic respiration when oxygen is available and switching to fermentation when it is not. This versatility enhances its survival capabilities across different environments, including dairy products, soil, and plant rhizospheres, where it plays a role in nutrient cycling. Notably, *Paenibacillus lactis 154* is recognized for its potential probiotic properties. It can be isolated from fermented dairy products and has been studied for its ability to produce antimicrobial compounds that inhibit pathogenic bacteria. Furthermore, its capacity to enhance plant health through beneficial interactions demonstrates its importance not only in food systems but also in agriculture. Researchers are exploring its applications in biocontrol and soil improvement, highlighting its significance in sustainable practices." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus lactis Negative Rod Aerobe 37 mesophilic spore-forming 743719 AGIP00000000.1 Bac0004039 Pseudomonas fulva 12-X Pseudomonas fulva 12-X.Project description not provided. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fulva 12-X Negative Rod Yes HostAssociated homo sapiens- soil Singles 743720 NC_015556.1 Bac0004040 Moraxella bovoculi 237 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella bovoculi 743974 NZ_AOMT01000044.1 Bac0004041 Gracilinema caldarium DSM 7334 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium 744872 NC_015732.1 Bac0004042 Ahrensia sp. R2A130 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Ahrensiaceae Ahrensia Ahrensia sp. R2A130 744979 AEEB00000000.1 Bac0004043 Escherichia coli 1303 "Escherichia coli 1303 is a species of bacteria that belongs to the genus Escherichia, which is a part of the family Enterobacteriaceae. This microbe is a heterotroph, meaning it relies on external energy sources to survive, and its metabolism is chemotrophic, as it uses chemical energy to produce its own food. E. coli 1303 is a facultative anaerobe, meaning it can survive with or without the presence of oxygen, but it grows faster in the presence of oxygen. The strain is gram-negative, which means that it has a cell wall that is lacking in peptidoglycan, a critical component of the bacterial cell wall. E. coli 1303 is a rod-shaped bacterium, also known as a bacillus, with a typical size range of 2-5 μm in length and 0.5-1 μm in width. This microbe can be found in various body sites across different species, including the human gut, where it is a normal inhabitant. It is also commonly found in soil, water, and animal feces. In terms of temperature preference, E. coli 1303 thrives in a range of temperatures, from 7°C to 45°C, with an optimal growth temperature of around 37°C. The energy production process of E. coli 1303 is aerobic, meaning it requires oxygen to produce energy, and it produces energy through the process of cellular respiration. One of the most notable aspects of E. coli 1303 is its significance in molecular biology. It has been extensively studied due to its ability to be easily genetically engineered and its relatively simple genetic makeup, making it an ideal model organism for studying gene expression, protein synthesis, and other biological processes. Its ability to undergo genetic transformation has also made it a popular choice for various biotechnological applications, such as the production of recombinant proteins and the development of novel vaccines." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 745156 NZ_CP009168.1 Bac0004044 Rahnella aquatilis CIP 78.65 = ATCC 33071 str. CUETM 77-115 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rahnella Rahnella aquatilis 745277 NC_017092.1 Bac0004045 Sphingomonas sp. MM-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. MM-1 745310 NC_020561.1 Bac0004046 Micromonospora humi Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora humi 745366 FMDM00000000.1 Bac0004047 Gemmiger formicilis "Gemmiger formicilis is a nonsporulating, anaerobic, butyrate-producing bacterium that plays a significant role in the intestinal microflora of animals, particularly in the gastrointestinal tracts of humans and other mammals. As a chemoheterotroph, it derives energy from organic compounds, utilizing a diverse range of substrates found within the complex environment of the gut. This metabolic capability allows G. formicilis to contribute to the fermentation processes that are essential for nutrient absorption and energy production in the host. The production of butyrate by Gemmiger formicilis is particularly noteworthy, as butyrate serves as a critical short-chain fatty acid that provides energy to colonocytes, the cells lining the colon, and supports gut health by maintaining the integrity of the gut barrier. Additionally, butyrate exhibits anti-inflammatory properties and plays a role in modulating immune responses, thus contributing to the overall well-being of the host. G. formicilis exemplifies the intricate balance of microbial communities within the gut ecosystem, highlighting its essential function in maintaining host health. Its presence can influence the host's metabolism, immune system, and even behavior, showcasing the profound impact that gut microbiota have on overall physiology. Understanding the role and functions of such microbes can provide insights into the development of therapeutic strategies for gut-related diseases and conditions, emphasizing the interconnectedness of microbial health and host well-being." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Gemmiger Gemmiger formicilis No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Nonsporulating 745368 FUYF00000000.1 Bac0004048 Acetoanaerobium noterae Bacillati Bacillota Clostridia Peptostreptococcales Filifactoraceae Acetoanaerobium Acetoanaerobium noterae 745369 FUYN00000000.1 Bac0004049 Rhodococcus sp. JVH1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. JVH1 745408 NZ_CP166291.1 Bac0004050 Gallaecimonas xiamenensis 3-C-1 "Gallaecimonas xiamenensis 3-C-1 is a Gram-negative, rod-shaped bacterium characterized by its optimal growth temperature of 29.0°C. This organism demonstrates a typical rod morphology, which is often associated with various ecological roles in microbial communities. The Gram-negative nature of G. xiamenensis 3-C-1 suggests that it possesses a unique outer membrane structure, which is indicative of its adaptability to various environments and may influence its interactions with other microorganisms.↵↵The specific optimal temperature of 29.0°C indicates that G. xiamenensis 3-C-1 may thrive in moderately warm habitats, potentially reflecting its adaptation to specific ecological niches. Such temperature preferences can play a crucial role in its distribution and metabolic activities, particularly in environments where temperature fluctuations are minimal.↵↵While further studies are necessary to fully understand the ecological implications of G. xiamenensis 3-C-1, its rod shape and Gram-negative classification suggest that it may be involved in nutrient cycling and interactions with other microbial species. These traits may render it a significant player in its native habitat, contributing to the overall microbial diversity and functioning of the ecosystem. Understanding the physiological and ecological roles of G. xiamenensis 3-C-1 could provide insights into the dynamics of microbial communities in comparable environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Gallaecimonadaceae Gallaecimonas Gallaecimonas xiamenensis Gram-negative rod 29 mesophilic 745411 AMRI00000000.1 Bac0004051 Oceanibacterium hippocampi Pseudomonadati Pseudomonadota Alphaproteobacteria Sneathiellales Sneathiellaceae Oceanibacterium Oceanibacterium hippocampi 745714 FWFR00000000.1 Bac0004052 Deinococcus gobiensis I-0 "Deinococcus gobiensis I-0 is a Gram-positive, spherical bacterium characterized by its facultative anaerobic metabolism and the ability to thrive optimally at a temperature of 29.0°C. As a non-spore-forming organism, it exhibits a unique resilience in various environmental conditions, allowing it to adapt to both aerobic and anaerobic settings. The spherical morphology of D. gobiensis I-0 may contribute to its survival strategies, potentially enhancing its surface area for nutrient absorption and interactions with other microorganisms.↵↵This bacterium's facultative lifestyle suggests it can efficiently utilize available oxygen while also being able to ferment substrates in low-oxygen environments, which could be advantageous in fluctuating ecological niches. The adaptability to both oxygen-rich and oxygen-poor conditions may play a significant role in its ecological interactions, possibly allowing it to inhabit diverse environments where oxygen levels vary.↵↵The implications of these traits could be profound, as they may enable D. gobiensis I-0 to participate in complex microbial communities, contributing to nutrient cycling and influencing the dynamics of microbial ecosystems. Further exploration of its metabolic pathways and interactions within its habitat may provide insights into its role in biogeochemical processes." Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis Gram-positive sphere non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 745776 NC_017806.1 Bac0004053 Aequorivita sublithincola DSM 14238 "Aequorivita sublithincola DSM 14238 is a Gram-negative, filamentous bacterium that demonstrates heterotrophic and chemotrophic metabolic capabilities, requiring oxygen for its growth. This microbe is characterized by its unique filamentous morphology, which may play a role in its ecological interactions and nutrient acquisition in its environment. Aequorivita sublithincola thrives in aerobic conditions, suggesting an adaptation to environments where oxygen is readily available, such as surface waters or sediments that are rich in organic matter.↵↵As a heterotroph, Aequorivita sublithincola utilizes organic compounds as its energy source, which aligns with its classification in the broader context of microbial communities that recycle organic materials in various ecosystems. The filamentous structure may enhance its surface area for nutrient absorption, potentially facilitating its role in the degradation of complex organic substances.↵↵The ecological implications of Aequorivita sublithincola's filamentous growth and aerobic metabolism indicate its potential contribution to biogeochemical cycles, particularly in the breakdown of organic matter in marine or freshwater habitats. The ability to thrive in oxygen-rich environments positions this bacterium as an important player in nutrient cycling processes, particularly in the context of organic matter decomposition and energy flow within aquatic ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita sublithincola Gram-negative filament non-motile aerobic heterotroph; chemotroph 746697 NC_018013.1 Bac0004054 Paraperlucidibaca baekdonensis str. DSM 26022 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Paraperlucidibaca Paraperlucidibaca baekdonensis aerobic 748120 QUNR00000000.1 Bac0004055 Azoarcus sp. KH32C Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Azoarcus Azoarcus sp. KH32C 748247 NC_020516.1 Bac0004056 Pseudogulbenkiania sp. NH8B Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Pseudogulbenkiania Pseudogulbenkiania sp. NH8B 748280 NC_016002.1 Bac0004057 Lactobacillus crispatus ST1 "Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. Historically, probiotic roles have been ascribed primarily to Lactobacillus acidophilus. The genus Lactobacillus presently comprises more than 50 recognized species of non-pathogenic bacteria which in addition to their probiotic effects are useful to human as indispensable agents for the fermentation of foods and feed. Lactobacillus crispatus (strain ST1) is a Gram-positive bacterium isolated from the crop of a chicken. L. crispatus displays a strong protein-dependent adhesion to the epithelial cells of the human vagina and has been shown to inhibit the adhesion of avian pathogenic Escherichia coli. It is also a member of the normal oral and gastrointestinal tract microflora. (Adapted from PMID: 20435723). (EBI Integr8)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus ST1 Positive Rod No 1 1 Facultative Mesophilic HostAssociated Free living Homo sapiens Chains No 748671 NC_014106.1 Bac0004058 Clostridium ljungdahlii DSM 13528 "Clostridium ljungdahlii was isolated for its ability to produce ethanol from synthesis gas, mostly a mixture of CO and H(2). Also known as syngas, this mix is a simple, abundant, and inexpensive substrate. It can be generated not only from natural gas and by gasification of coal and oil, but also from biomass, municipal waste, or by recycling of used plastics. Syngas has already been used as a major feedstock in the chemical industry for decades, however, the reactions require a set CO/H(2) ratio and expensive gas purification, as contaminants will poison noble catalysts. Bacteria with the ability to ferment syngas are far more tolerant to such contaminants and are thus already industrially used for production of the biofuel additive ethanol. C.ljungdahlii is a homoacetogenic bacteria, using the Wood-Ljungdahl pathway to fix CO(2) or CO and convert it into acetyl-CoA. It can both produce and use ethanol for growth, it can grow heterotrophically on a large number of substrates, and it can assimilate nitrogen via 3 different pathways. It is obviously of great industrial interest (adapted from PMID 20616070). (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium ljungdahlii DSM 13528 Positive Rod Yes 1 1 Aerobic Chemoorganotroph Mesophilic Terrestrial Free living Chicken Pairs-Singles Sporulating No 748727 NC_014328.1 Bac0004059 Nitratifractor salsuginis DSM 16511 "Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1) is a strictly chemolithoautotrophic, denitrifying Gram-negative bacterium isolated from deep-sea hydrothermal vent chimney structures at the Iheya North hydrothermal field in the Mid-Okinawa Trough, Japan. Cells have a mean length of 2.5 mm and a width of approximately 0.6 mm. N. salsuginis grows by respiratory nitrate reduction with H2 as electron donor and nitrate as electron acceptor, forming N2 as a metabolic product. Oxygen, at low concentrations, could serve as an alternative electron acceptor for growth. Growth is observed at temperatures between 28 and 40 degrees Celsius with an optimum at 37.6 degrees Celsius, and at pH values between 5.6 and 7.6, with an optimum at pH 7.0. It is able to grow in the presence of between 1.5 and 3.5% (w/v) NaCl, with an optimum at 3.0. (Adapted from PMID: 15774687). (HAMAP: NITSE)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Nitratifractor Nitratifractor salsuginis DSM 16511 Negative Bacilli No 1 2 Facultative 37 Chemolithoautotroph Mesophilic Specialized Nonsporulating No 749222 NC_014935.1 Bac0004060 Acetobacter tropicalis NBRC 101654 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter tropicalis 749388 BABS00000000.1 Bac0004061 Enterococcus faecalis DAPTO 512 "Enterococcus faecalis DAPTO 512 is a Gram-positive cocci that thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to various oxygen levels in its environment. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, which supports its versatility in diverse habitats. Enterococcus faecalis is commonly found in multiple environments, including human and animal gastrointestinal tracts, where it plays a role in the microbiota.↵↵The ability of E. faecalis DAPTO 512 to grow in both the presence and absence of oxygen suggests a metabolic flexibility that may facilitate its survival in fluctuating conditions. This strain's ecological adaptability could contribute to its persistence in various niches, including those influenced by antibiotic pressure, highlighting its potential role in microbial community dynamics. Understanding the physiological traits of Enterococcus faecalis DAPTO 512 can provide insights into its ecological interactions and resilience in the face of environmental changes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 749489 AEBT00000000.1 Bac0004062 Enterococcus faecalis DAPTO 516 "Enterococcus faecalis DAPTO 516 is a Gram-positive, cocci-shaped bacterium characterized as a facultative anaerobe and a chemoorganotroph, with an optimal growth temperature of 37.0°C. This organism is capable of thriving in diverse habitats, which suggests its versatility in adapting to various environmental conditions. ↵↵As a facultative anaerobe, E. faecalis DAPTO 516 can grow in both the presence and absence of oxygen, allowing it to exploit a wide range of ecological niches. Its classification as a chemoorganotroph indicates that it derives energy through the oxidation of organic compounds, further emphasizing its adaptability to different environments where organic matter is available.↵↵Given its ability to inhabit multiple environments, E. faecalis DAPTO 516 may play a role in nutrient cycling within those ecosystems. The presence of such bacteria in diverse habitats underscores their potential importance in maintaining microbial balance and contributing to the overall functioning of their ecological systems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 749490 AEBS00000000.1 Bac0004063 Enterococcus faecalis TX4248 "Enterococcus faecalis TX4248 is a Gram-positive coccus that exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This bacterium is categorized as a chemoorganotroph, indicating that it utilizes organic compounds as its primary energy source. Enterococcus faecalis TX4248 has an optimal growth temperature of 37.0°C, which aligns with the typical human body temperature, suggesting a potential adaptability to warm-blooded hosts.↵↵The habitat of Enterococcus faecalis TX4248 is diverse, allowing it to inhabit a variety of ecological niches. This adaptability may contribute to its persistence in different environments, including human gastrointestinal tracts and various surfaces. The ability to survive in multiple habitats is characteristic of the Enterococcus genus, which is often found in fecal matter, as well as in soil and water.↵↵The facultative anaerobic nature of Enterococcus faecalis TX4248 implies a metabolic flexibility that enables it to adjust to fluctuations in oxygen availability, potentially giving it a competitive advantage in diverse ecological settings. This trait may also play a role in its interactions with other microbial communities, allowing it to thrive in complex ecosystems. Overall, the combination of its Gram-positive cocci morphology, metabolic capabilities, and adaptability to various environments positions Enterococcus faecalis TX4248 as a significant organism in both ecological and microbiological contexts." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 749495 AEBR00000000.1 Bac0004064 Escherichia coli MS 21-1 "Escherichia coli MS 21-1 is a gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classifying it as a mesophile. This microbe is a chemoheterotroph, utilizing organic compounds for growth and deriving energy from chemical processes, making it reliant on organic substances in its environment. E. coli MS 21-1 is versatile and can be found in a variety of body sites across different species, primarily inhabiting the intestines of warm-blooded organisms, including humans, where it plays a crucial role in digestion and nutrient absorption. As a gram-negative organism, E. coli MS 21-1 possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which contributes to its pathogenic potential. The rod-shaped morphology allows for swift motility, aided by flagella that enhance its ability to navigate through viscous environments such as intestinal mucus. In terms of oxygen requirements, E. coli MS 21-1 is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. This adaptability is key to its survival in various ecological niches, enabling it to thrive in both aerobic and anaerobic conditions. Beyond its role in the gut microbiome, E. coli MS 21-1 has garnered attention in biotechnological applications for its ability to produce valuable metabolites, including biofuels and various biopolymers. Research continues to explore its potential in synthetic biology, leveraging its metabolic pathways to devise innovative solutions in environmental management and health sciences. The versatility and resilience of E. coli MS 21-1 exemplify the complex interactions within microbial ecosystems and highlight its significance in both ecological and industrial contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 749527 ADTR00000000.1 Bac0004065 Escherichia coli MS 117-3 "Escherichia coli MS 117-3 is a Gram-negative, rod-shaped bacterium characterized by its presence in pairs or as singles. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the typical human body temperature, suggesting a close association with warm-blooded hosts. E. coli MS 117-3 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that facilitates its survival in diverse environments within host organisms.↵↵This strain is noted to be host-associated, which emphasizes its potential role in the microbiota of various hosts, including humans and other mammals. The adaptability of E. coli MS 117-3 to different oxygen levels may confer an advantage in fluctuating environments within the host, where oxygen availability can vary significantly. Overall, the traits of E. coli MS 117-3 reflect its ecological versatility and potential significance in host-associated microbial communities, where it may contribute to metabolic processes and nutrient cycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 749539 ADTS00000000.1 Bac0004066 Alkalibacterium subtropicum Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alkalibacterium Alkalibacterium subtropicum 753702 FOLT00000000.1 Bac0004067 Treponema phagedenis F0421 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema phagedenis 754027 AEFH00000000.1 Bac0004068 Mesorhizobium australicum WSM2073 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium australicum Australian soils 754035 NC_019973.1 Bac0004069 Shigella dysenteriae 1617 "Shigella dysenteriae 1617 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This organism is a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments, which contributes to its versatility in various host-associated habitats. Optimal growth occurs at a temperature of 37.0°C, aligning with the typical body temperature of its hosts, suggesting a close adaptation to parasitic life.↵↵As a chemoorganotroph, S. dysenteriae 1617 derives its energy from organic compounds, which it likely obtains from the host's intestinal environment. This metabolic capability is indicative of its role in a symbiotic or pathogenic relationship within the gastrointestinal tract. The presence of this bacterium in host-associated habitats raises important considerations regarding human health, particularly in regions where sanitation and hygiene practices may be inadequate.↵↵Understanding the traits of S. dysenteriae 1617 not only informs its biological and ecological dynamics but also highlights the complexity of microbial interactions within the host environment. Such insights are crucial for developing strategies to manage infections and understanding the broader implications of microbial diversity in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella dysenteriae Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 754093 ADUT00000000.1 Bac0004070 Polaribacter sp. SA4-10 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. SA4-10 754397 NZ_CP019331.1 Bac0004071 Gilvibacter sp. SZ-19 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Gilvibacter Gilvibacter sp. SZ-19 754429 NZ_CP019333.1 Bac0004072 Photobacterium aphoticum Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium aphoticum 754436 LDOV00000000.1 Bac0004073 Methylophaga nitratireducenticrescens str. GP59 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga nitratireducenticrescens 754476 NZ_CP021975.1 Bac0004074 Methylophaga nitratireducenticrescens str. JAM1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga nitratireducenticrescens 754476 NC_017857.3 Bac0004075 Methylophaga frappieri str. JAM7 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga frappieri 754477 NC_017856.1 Bac0004076 Paraburkholderia sprentiae WSM5005 "Paraburkholderia sprentiae WSM5005 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This mesophilic organism is part of the Burkholderia genus, which is known for its diverse ecological roles and metabolic capabilities. The Gram-negative nature of P. sprentiae WSM5005 suggests a complex cell envelope structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane that may contain lipopolysaccharides, contributing to its environmental resilience and interactions with other microbes.↵↵As a member of the Paraburkholderia clade, P. sprentiae WSM5005 may possess traits that facilitate symbiotic relationships with plants, a characteristic observed in several other species within the genus. Such relationships often involve nitrogen fixation or the promotion of plant growth, potentially enhancing nutrient availability in various ecosystems. Understanding the specific interactions and roles of P. sprentiae WSM5005 within its ecological niche could provide insights into its potential contributions to soil health and plant productivity.↵↵In summary, while the specific ecological roles of Paraburkholderia sprentiae WSM5005 remain to be elucidated, its Gram-negative, rod-shaped morphology and optimal growth at 29.0°C position it as a candidate for further investigation into beneficial soil microbe dynamics and their applications in sustainable agriculture." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sprentiae Gram-negative rod 29 mesophilic 754502 NZ_CP017564.2 Bac0004077 Mesomycoplasma hyopneumoniae 7422 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyopneumoniae 754503 NC_021831.1 Bac0004078 Rhizobium leguminosarum bv. trifolii WSM1689 "Rhizobium leguminosarum bv. trifolii WSM1689 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells. This strain is nonsporulating and relies on a chemoheterotrophic lifestyle, utilizing organic compounds as its energy source. As an aerobic organism, R. leguminosarum bv. trifolii WSM1689 requires oxygen for its metabolic processes, which aligns with its typical habitat in soil environments.↵↵This bacterium is well-known for its role in symbiotic nitrogen fixation, particularly in association with leguminous plants. While the specific interactions of strain WSM1689 with host plants are not detailed here, members of the Rhizobium genus are generally recognized for their ability to form root nodules, where they convert atmospheric nitrogen into a form that is accessible to plants. This mutualistic relationship not only enhances soil fertility but also contributes to the overall health of agricultural ecosystems.↵↵The ecological significance of Rhizobium leguminosarum bv. trifolii WSM1689 extends beyond nitrogen fixation, as its presence in soil can influence microbial community dynamics and nutrient cycling. By supporting legume growth and improving soil structure, this strain plays a crucial role in sustainable agricultural practices, particularly in nitrogen-deficient soils. Understanding the characteristics and behaviors of this bacterium can lead to improved crop yields and reduced reliance on synthetic fertilizers." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 754523 NZ_CP007047.1 Bac0004079 Rhizobium leguminosarum bv. trifolii WSM2297 "Rhizobium leguminosarum bv. trifolii WSM2297 is a Gram-negative, rod-shaped bacterium that typically exists as single cells in soil environments. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. As an aerobic organism, R. leguminosarum bv. trifolii WSM2297 requires oxygen for its metabolic processes, which is consistent with its habitat in well-aerated soils.↵↵Notably, this microbe does not undergo sporulation, which suggests that it relies on stable environmental conditions for survival and reproduction rather than forming resistant spores. The absence of sporulation may also imply a reliance on favorable soil conditions to maintain its population, as it cannot enter a dormant state to withstand adverse situations.↵↵The ecological role of R. leguminosarum bv. trifolii WSM2297 is particularly significant in its association with leguminous plants, where it participates in nitrogen fixation. This symbiotic relationship enhances soil fertility and contributes to the overall health of agroecosystems. By converting atmospheric nitrogen into a form accessible to plants, this strain plays a crucial role in nutrient cycling within its soil habitat, supporting both plant growth and soil microbial diversity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 754762 AJUK00000000.1 Bac0004080 Rhizobium leguminosarum bv. trifolii WSM597 "Rhizobium leguminosarum bv. trifolii WSM597 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain is a chemoheterotroph, primarily deriving its energy from organic compounds in its environment. R. leguminosarum bv. trifolii WSM597 is typically found in soil, where it plays a critical role in the nitrogen cycle through its symbiotic relationships with leguminous plants, particularly clover species.↵↵As an aerobic bacterium, R. leguminosarum bv. trifolii WSM597 requires oxygen for its metabolic processes, which further emphasizes its ecological niche in well-aerated soil environments. Its ability to fix atmospheric nitrogen in association with host plants not only enhances soil fertility but also contributes to sustainable agricultural practices by reducing the need for synthetic nitrogen fertilizers. ↵↵The ecological significance of R. leguminosarum bv. trifolii WSM597 extends beyond nitrogen fixation; it may also influence soil microbial communities and promote plant health through various interactions. Understanding its traits and functions can provide insights into agricultural sustainability and soil management in diverse ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 754764 AKHZ00000000.1 Bac0004081 Peptoniphilus coxii str. DNF00729 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Aedoeadaptatus Aedoeadaptatus coxii anaerobic 755172 LSDG00000000.1 Bac0004082 Rhizobium leguminosarum bv. viciae WSM1455 "Rhizobium leguminosarum bv. viciae WSM1455 is a Gram-negative, rod-shaped bacterium that exists as single cells and exhibits chemoheterotrophic metabolism, relying on organic compounds for energy. This strain is nonsporulating, indicating its inability to form spores for survival under adverse conditions. As an aerobic organism, R. leguminosarum bv. viciae WSM1455 requires oxygen for its metabolic processes, making it well-suited to soil environments where oxygen availability is generally sufficient.↵↵This bacterium is known for its symbiotic relationship with leguminous plants, facilitating nitrogen fixation, which is crucial for soil fertility. By converting atmospheric nitrogen into a form that plants can utilize, R. leguminosarum bv. viciae WSM1455 enhances the nutrient availability in its habitat, promoting plant growth and contributing to sustainable agricultural practices. Its role in soil ecosystems underscores its importance in both natural and cultivated environments, where it supports plant health and productivity through nutrient cycling. Thus, the presence of this bacterium in soil not only aids in nitrogen fixation but also plays a significant role in maintaining ecological balance within agricultural systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 755176 AJUF00000000.1 Bac0004083 Cyanobacterium aponinum PCC 10605 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Cyanobacterium Cyanobacterium aponinum 755178 NC_019777.1 Bac0004084 Fluviicola taffensis DSM 16823 "Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) is a strictly aerobic, yellow-orange-pigmented, motile, Gram-negative bacterium isolated from water of the River Taff, Cardiff, UK, during January 2000. The cells are non-flagellated, rod-shaped. They are 0.4-0.5 mm wide and 1.5-5.7 mm long, with rarer longer filaments of up to 51 mm in length. Colonies are 1-5 mm in diameter, circular, flat, transparent, shiny, yellow-orange and creamy on high nutrient solid media. It is motile by gliding. Growth occurs between 4-25 degrees Celsius, with an optimum at about 20 degrees Celsius. It is able to hydrolyze DNA and gelatin, but not agar, arginine, aesculin or starch. Acid is not produced from glucose. F.taffensis is resistant to chloramphenicol, streptomycin and kanamycin, but susceptible to penicillin G, ampicillin, rifampicin and tetracycline. (Adapted from PMID: 16166730). (EBI Integr8)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Fluviicola Fluviicola taffensis DSM 16823 Negative Bacilli Yes 1 2 Aerobic 20 Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating No 755732 NC_015321.1 Bac0004085 Microcoleus vaginatus FGP-2 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Microcoleus Microcoleus vaginatus 756067 AFJC00000000.1 Bac0004086 Rubinisphaera brasiliensis DSM 5305 "Rubinisphaera brasiliensis DSM 5305 is a thermophilic, chemolithoautotrophic microorganism that thrives in environments with temperatures above 50°C. As a phototroph, this microbe harnesses energy from light, producing ATP through photosynthesis. The energy production process involves the oxidation of reduced sulfur compounds, such as hydrogen sulfide, which is a unique characteristic of chemolithoautotrophic organisms. This microbe is gram-negative, and its shape is typically rod-like, with dimensions ranging from 0.5-1.5 μm in length and 0.1-0.3 μm in width. The cells of Rubinisphaera brasiliensis are commonly found in various environments, including soil, sediment, and aquatic ecosystems. The microbe's ability to thrive in a wide range of environments is likely due to its tolerance to varying levels of oxygen. Specifically, it is an aerotolerant anaerobe, meaning it can survive in both aerobic and anaerobic conditions. One of the defining characteristics of Rubinisphaera brasiliensis is its ability to oxidize reduced sulfur compounds, such as hydrogen sulfide, to produce energy. This process is essential for its survival in environments where these compounds are present. Additionally, its thermophilic nature allows it to thrive in environments with high temperatures, which is advantageous for its survival in hot environments. Rubinisphaera brasiliensis DSM 5305 is a valuable research subject, providing insights into the evolution of chemolithoautotrophic metabolism and the adaptation of microorganisms to high-temperature environments. Its unique characteristics make it an ideal model organism for studying the metabolic pathways and ecological roles of thermophilic microorganisms." Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Rubinisphaera Rubinisphaera brasiliensis Cocci Yes 1 2 Aerobic Chemoorganotroph Mesophilic Fresh water-Marine Free living Nonsporulating 756272 NC_015174.1 Bac0004087 Nocardia amikacinitolerans "Nocardia amikacinitolerans is a Gram-positive bacterium characterized by its ability to thrive optimally at a temperature of 25.0°C. This organism belongs to the genus Nocardia, which is known for its filamentous, branched morphology and distinctive cell wall structure, rich in mycolic acids. The Gram-positive nature of N. amikacinitolerans suggests the presence of a thick peptidoglycan layer, which is a hallmark of this group of bacteria.↵↵The ecological role of Nocardia species, including N. amikacinitolerans, is often linked to soil and organic matter, where they contribute to the degradation of complex organic compounds. Their metabolic versatility enables them to play a significant role in nutrient cycling within terrestrial ecosystems. Furthermore, the optimal growth temperature of 25.0°C aligns with typical environmental conditions found in soil habitats, potentially emphasizing the organism's adaptation to its ecological niche.↵↵Overall, Nocardia amikacinitolerans represents a significant component of the microbial community in soil environments, where it may influence both the decomposition processes and the overall health of the ecosystem. The study of this microbe could provide further insights into microbial interactions and functions within its natural habitat." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia amikacinitolerans Gram-positive non-motile 25 mesophilic 756689 OBEG00000000.1 Bac0004088 Moritella sp. JT01 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Moritellaceae Moritella Moritella sp. JT01 756698 LOCN00000000.1 Bac0004089 Bacillus sp. WP8 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. WP8 756828 NZ_CP010075.1 Bac0004090 Acinetobacter indicus str. DFZJA80-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus 756892 RZUA00000000.1 Bac0004091 Acinetobacter indicus Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus 756892 NZ_CP024620.2 Bac0004092 Pseudomonas cannabina pv. alisalensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cannabina 757414 RBPI00000000.1 Bac0004093 Caballeronia insecticola Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia insecticola 758793 NC_021294.1 Bac0004094 Nocardiopsis flavescens Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis flavescens 758803 FQZK00000000.1 Bac0004095 Aquiflexum balticum DSM 16537 "Aquiflexum balticum DSM 16537 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This thermophilic organism belongs to the genus Aquiflexum, which is characterized by its ability to adapt to specific thermal and oxygen conditions.↵↵The rod morphology of A. balticum suggests a structural adaptation that may facilitate its survival and metabolic processes in its native habitats. As an aerobic microbe, it likely engages in oxidative phosphorylation for energy production, utilizing oxygen as the terminal electron acceptor. The preference for a moderate temperature of 29.0°C indicates that A. balticum may inhabit environments that provide stable thermal conditions, such as warm aquatic ecosystems or biofilms in nutrient-rich substrates.↵↵The ecological role of Aquiflexum balticum may involve nutrient cycling and organic matter degradation, contributing to the overall health and stability of its ecosystem. Its aerobic metabolism could play a crucial part in maintaining oxygen levels and influencing the microbial community structure within its habitat. Understanding the specific interactions and functions of A. balticum within its environment can provide insights into the ecological dynamics of microbial populations in aerobic aquatic systems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Aquiflexum Aquiflexum balticum Gram-negative rod aerobic 29 mesophilic 758820 NZ_LT838813.1 Bac0004096 Leptospira santarosai serovar Shermani str. LT 821 str. LT821 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 758847 NZ_CP006695.1 Bac0004097 Natranaerobius trueperi str. DSM 18760 "Natranaerobius trueperi str. DSM 18760 is a Gram-positive, rod-shaped bacterium that thrives under strictly anaerobic conditions, with an optimal growth temperature of 45.0°C. This microorganism is characterized by its non-spore-forming nature, which indicates that it relies on other survival strategies in its habitat. The anaerobic requirement suggests that N. trueperi is adapted to environments devoid of oxygen, potentially including deep-sea sediments or subsurface microbial ecosystems where organic matter is decomposed in the absence of oxygen. ↵↵The optimal growth temperature of 45.0°C points to a preference for thermophilic conditions, hinting at its potential role in biogeochemical cycles within high-temperature environments. This thermophilic characteristic may also contribute to its utility in biotechnological applications, particularly in processes that involve organic waste treatment or bioenergy production, where high temperatures are often encountered. Further investigation into its metabolic pathways could provide insights into how N. trueperi contributes to the degradation of complex organic compounds in anaerobic ecosystems, thereby highlighting its ecological significance in nutrient cycling and energy flow within its natural habitat." Bacillati Bacillota Clostridia Natranaerobiales Natranaerobiaceae Natranaerobius Natranaerobius trueperi Gram-positive rod non-motile anaerobic 45 thermophilic non-spore-forming 759412 NIQC00000000.1 Bac0004098 Sporosarcina newyorkensis Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina newyorkensis 759851 FUYJ00000000.1 Bac0004099 Streptococcus dysgalactiae subsp. equisimilis AC-2713 "Streptococcus dysgalactiae subsp. equisimilis AC-2713 is a Gram-positive coccal bacterium characterized by its arrangement in chains or singles and its nonsporulating nature. This strain is classified as facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments. ↵↵Streptococcus dysgalactiae subsp. equisimilis is typically found in host-associated habitats, suggesting a close relationship with animal hosts, where it may participate in various biological interactions. The facultative anaerobic respiration of this microbe allows it to adapt to fluctuating oxygen levels within its host environment, enhancing its survival and metabolic versatility. ↵↵This strain exemplifies the adaptability of certain Streptococcus species to different ecological niches, potentially allowing it to play roles in both commensal and pathogenic relationships within its host. Further research may elucidate its specific ecological impacts and interactions within host-associated environments, emphasizing the importance of studying such microbes in understanding broader microbial dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Chains-Singles Nonsporulating 759913 NC_019042.1 Bac0004100 Hippea maritima DSM 10411 "Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) is an obligate anaerobic, moderately thermophilic, sulfur-reducing, Gram-negative bacterium isolated from shallow-water hot vents of the Bay of Plenty (New Zealand) and Matupi Harbour (Papua New Guinea). Cells are short, motile rods with one polar flagellum. It grows optimally at temperatures between 52 and 54 degrees Celsius, between pH 5.8-6.2, and with 2.5-3% (w/v) NaCl. Growth substrates are molecular hydrogen, acetate and saturated fatty acids; one of the strains, isolated from Matupi Harbour, is able to utilize ethanol. Elemental sulfur is required for growth. H2S and CO2 are the only growth products. No growth occurs in the absence of 100 mg yeast extract I-1. (Adapted from PMID: 10425760). (HAMAP: HIPMA)" Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Hippeaceae Hippea Hippea maritima DSM 10411 Negative Bacilli Yes 1 2 Anaerobic 52 Lithotroph Thermophilic Specialized Free living Nonsporulating No 760142 NC_015318.1 Bac0004101 Sulfurospirillum barnesii SES-3 "Sulfurospirillum barnesii SES-3 is a Gram-negative, curved to spiral-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 32.0 °C. This organism is notable for its distinctive morphology and its adaptation to low-oxygen conditions, which is characteristic of certain sulfate-reducing bacteria. The curved/spiral shape of S. barnesii contributes to its motility and may play a role in its ecological interactions within anaerobic habitats.↵↵As an anaerobe, S. barnesii SES-3 engages in metabolic processes that are likely linked to sulfur compounds, although specific metabolic pathways are not detailed here. The ability to survive and proliferate in environments devoid of oxygen suggests that this bacterium could be involved in biogeochemical cycling, particularly in the reduction of sulfate to sulfide. This metabolic characteristic positions S. barnesii as a potentially important player in the degradation of organic matter in sediments and other anoxic environments.↵↵Further investigation into the ecological roles of S. barnesii could reveal its contributions to the microbial community structure and function within its native habitats. Understanding its interactions with other microorganisms and its role in nutrient cycling could provide insights into the dynamics of anaerobic ecosystems, particularly in relation to sulfur metabolism and its implications for environmental health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum barnesii Gram-negative curved/spiral motile anaerobic 32 mesophilic 760154 NC_018002.1 Bac0004102 Haliscomenobacter hydrossis DSM 1100 Haliscomenobacter hydrossis DSM 1100.This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Saprospiria Saprospirales Haliscomenobacteraceae Haliscomenobacter Haliscomenobacter hydrossis DSM 1100 Bacilli No Aerobic 26 Chemoorganotroph Mesophilic Aquatic Free living Chains Nonsporulating 760192 NC_015510.1 Bac0004103 Streptococcus parasanguinis ATCC 15912 "Streptococcus parasanguinis ATCC 15912 is a mesophilic, facultative anaerobic, gram-positive coccus that thrives in temperatures ranging from 20°C to 40°C. As a facultative anaerobe, it can grow in the presence or absence of oxygen, although it prefers aerobic conditions. Its metabolism is heterotrophic, meaning it obtains energy by breaking down organic compounds. Specifically, it uses fermentation to produce energy, utilizing the substrate glucose and other carbohydrates. Streptococcus parasanguinis ATCC 15912 is spherical in shape, typically ranging from 0.5 to 1.0 μm in diameter, and forms chains or pairs. Its Gram-staining properties are characteristic of gram-positive bacteria, where the cell wall is composed of a thick layer of peptidoglycan. As an inhabitant of the oral cavity, this microbe is found on the surface of teeth and along the gingiva. It is also detected in the saliva, tongue, and palatal mucosa. In addition, it has been isolated from blood and other body fluids, particularly in cases of bacteremia. Streptococcus parasanguinis ATCC 15912 is a common commensal microbe, co-existing with other oral bacteria and playing a role in the development of dental plaque. Despite its non-pathogenic nature, it has been implicated in diseases such as periodontitis and endocarditis. Moreover, it has been shown to be potentially involved in the early stages of cardiovascular disease. This microbe's ability to form biofilms, adhere to surfaces, and produce extracellular enzymes contributes to its pathogenic potential. In summary, Streptococcus parasanguinis ATCC 15912 is a versatile, opportunistic microbe that thrives in various environments, from the oral cavity to blood and other body fluids. Its complex interactions with other microorganisms and host tissues make it an important focus of research in the fields of oral and cardiovascular health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis ATCC 15912 Positive Cocci No Facultative Mesophilic HostAssociated Free living Homo sapiens Chains-Pairs Nonsporulating 760570 NC_015678.1 Bac0004104 Streptococcus pneumoniae GA44500 "Streptococcus pneumoniae GA44500 is a Gram-positive coccal bacterium that typically arranges itself in chains or pairs. This organism is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It demonstrates optimal growth at a temperature of 30.0°C, suggesting a preference for moderate temperatures that may reflect its adaptability to various habitats.↵↵The habitat of S. pneumoniae GA44500 is noted as multiple, indicating its potential presence in diverse ecological niches. This versatility in habitat suggests that the strain may occupy various environments, potentially including both human-associated and natural ecosystems. The chain and pair arrangement of this bacterium is a characteristic feature of the genus Streptococcus, which may influence its interactions within microbial communities.↵↵The ability of S. pneumoniae GA44500 to function as a facultative anaerobe allows it to adapt to fluctuating oxygen levels, enabling survival in environments where oxygen availability may vary. This trait may contribute to its persistence in different ecological settings, including those characterized by limited oxygen. Understanding the adaptability of S. pneumoniae GA44500 in various environments can provide insights into its ecological roles and interactions with other microbial species, as well as its potential implications for public health and environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 760826 AGOI00000000.1 Bac0004105 Runella slithyformis DSM 19594 Runella slithyformis DSM 19594.This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Runella Runella slithyformis DSM 19594 Negative Bacilli No Aerobic Mesophilic Aquatic Free living 761193 NC_015695.1 Bac0004106 Salinibacter ruber M8 Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber 761659 NC_014026.1 Bac0004107 Mycobacterium europaeum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium europaeum microaerophile 761804 CTEC00000000.1 Bac0004108 Leuconostoc kimchii IMSNU 11154 str. IMSNU11154 "Leuconostoc kimchii IMSNU 11154 str. IMSNU11154 is a Gram-positive, facultatively anaerobic coccus that is notable for its role in food fermentation processes, particularly in the production of kimchi. This strain exhibits a characteristic coccoid shape, which is typical of the Leuconostoc genus, and contributes to its ability to thrive in a variety of environments, including those with fluctuating oxygen levels. ↵↵As a facultative anaerobe, L. kimchii is capable of fermentative metabolism in both aerobic and anaerobic conditions, enabling it to adapt to the dynamic environments often encountered during food preservation and fermentation. This adaptability supports its use in traditional fermentation practices, where it plays a crucial role in the development of flavor and texture in fermented vegetables.↵↵The strain IMSNU 11154 has been studied for its potential applications in food science and microbiology. Its ability to produce exopolysaccharides may contribute to the viscosity and mouthfeel of fermented products, enhancing the sensory qualities appreciated in traditional dishes. Moreover, the successful fermentation by this strain may reflect its symbiotic relationships with other microorganisms present in the fermentation environment, illustrating the complex interplay of microbial communities in food systems. This highlights the importance of L. kimchii not only in culinary applications but also in understanding microbial dynamics and interactions during fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc kimchii Positive Cocci No 1 1 Facultative Mesophilic 762051 NC_014133.1 Bac0004109 Bifidobacterium callitrichos Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium callitrichos 762209 NWTW00000000.1 Bac0004110 Achromobacter xylosoxidans A8 "Achromobacter xylosoxidans A8 is a Gram-negative, rod-shaped bacterium that thrives in moderate temperature conditions, primarily classified as a mesophile. This microbe is a chemoheterotroph, meaning it derives its energy from the organic compounds in its environment while requiring organic carbon sources for growth. Its versatile metabolic capabilities enable it to inhabit various body sites across numerous species, including humans, where it can be found in fluids such as sputum, blood, and infected tissues. A. xylosoxidans is considered a facultative anaerobe, allowing it to thrive in environments with or without oxygen, which gives it significant adaptability in different ecological niches. Achromobacter xylosoxidans A8 is notable for its ability to survive in harsh conditions, including the presence of antibiotics and disinfectants, making it a resilient pathogen in clinical settings. Often associated with nosocomial infections, particularly in immunocompromised patients, this bacterium can cause various infections ranging from respiratory tract infections to bloodstream infections. It has also been implicated in chronic lung infections among patients with cystic fibrosis. Additionally, A. xylosoxidans has been studied for its potential applications in biotechnology and environmental microbiology, particularly for its role in bioremediation processes. Its capacity to degrade complex organic compounds can be harnessed to clean up contaminated environments, thus contributing to eco-friendly solutions for pollution management. The ongoing research into its metabolic pathways and survival mechanisms may unveil further applications in both medical and environmental fields." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter xylosoxidans A8 Negative Rod Yes 1 1 Aerobe HostAssociated Free living No 762376 NC_014642.1 Bac0004111 Rhodothermus marinus SG0.5JP17-172 "Rhodothermus marinus is a thermohalophilic bacterium and is the only validly described species in the genus Rhodothermus. It is aerobic, chemoorganotrophic, has been isolated from marine habitats and grows from 54 to 77 degrees Celsius with optimal growth at 65 degrees Celsius. It grows best in 2% NaCl although growth can occur from 0.5% NaCl to over 6% NaCl. Thus it is therefore both thermophilic and slightly but strictly halophilic and can only grow in a very narrow zone in the submarine hot springs, close to their openings, determined by temperature and salt concentration as well as of content of O2 and organic material.Strain DSM 4252 (the type strain) was isolated in 1988 at 2-3m depth (at low tide) from a submarine hot spring at Reykjanes, Isafjardardjup Bay, off the south-west coast of Iceland (adapted from PMID 16075163 and J.Gen.Microbiol 134:299). Cells are 0.5 um in diameter and 2-2.5 um long, without flagella, non-spore forming and without lipid granules, although they form a slime capsule when grown in rich-media (adapted from 10.4056.sigs46736). (HAMAP: RHOM4)" Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus SG0.5JP17-172 Negative Rod No 1 2 Aerobic 65 Heterotroph Thermophilic Marine - Hot spring Free living Singles Nonsporulating No 762570 NC_015967.1 Bac0004112 Thermus thermophilus SG0.5JP17-16 "Thermus thermophilus SG0.5JP17-16 is a Gram-negative, aerobic bacterium characterized by its specialized habitat and notable thermal adaptation. This strain thrives at an optimal growth temperature of 0.0 °C, indicating a psychrophilic nature that allows it to survive in extremely cold environments. ↵↵As an organism that requires oxygen for its metabolic processes, T. thermophilus SG0.5JP17-16 likely engages in aerobic respiration, which is essential for energy production in cold habitats where metabolic rates are generally lower. The adaptation to cold temperatures suggests that this microbe may possess unique biochemical pathways and structural proteins that maintain cellular integrity and function under chilling conditions.↵↵The specific ecological niche occupied by T. thermophilus SG0.5JP17-16 remains to be fully elucidated, but its presence in specialized environments hints at potential roles in nutrient cycling or organic matter degradation in cold ecosystems. The extremophilic properties of this bacterium could provide insights into microbial life strategies in extreme environments, which may have applications in biotechnology and bioremediation processes. Understanding the metabolic capabilities of T. thermophilus SG0.5JP17-16 could pave the way for exploring cold-adapted enzymes that may be advantageous in industrial applications requiring low-temperature processing." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus Negative NA NA 1 2 Aerobe 0 Thermophilic Specialized 762633 NC_017273.1 Bac0004113 Duganella phyllosphaerae str. T54 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella phyllosphaerae aerobic 762836 LROM00000000.1 Bac0004114 Enterococcus rivorum Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus rivorum 762845 MIEK00000000.1 Bac0004115 Pseudopedobacter saltans DSM 12145 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pseudopedobacter Pseudopedobacter saltans 762903 NC_015177.1 Bac0004116 Rothia dentocariosa ATCC 17931 "Rothia dentocariosa ATCC 17931 is a gram-positive, coccoid-shaped bacterium that thrives at mesophilic temperatures, demonstrating a preference for growth in moderate environments. This microbe is classified as a chemoheterotroph, utilizing organic compounds for both carbon and energy. Rothia dentocariosa is primarily found in the oral cavity, specifically in dental plaque, but it can also inhabit other body sites including the respiratory tract and, in some cases, it may be isolated from the gastrointestinal tract. As a gram-positive organism, Rothia dentocariosa exhibits a thick peptidoglycan layer, which contributes to its rigidity and staining characteristics during the Gram staining process. Its coccoid shape gives it a spherical appearance, which can often manifest in clusters or pairs. The mesophilic temperature preference suggests that this bacterium grows optimally at temperatures around 30-37°C, which is consistent with the human body temperature and indicates its adaptation to the human oral environment. Being a chemoheterotroph, Rothia dentocariosa relies on organic nutrients from its environment, primarily derived from dietary sources and metabolic products of other microorganisms in the mouth. This bacterium acts as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic conditions, thereby thriving in the dynamic microbiome of the oral cavity. Rothia dentocariosa plays a significant role in oral health, as it can interact with other oral bacteria, influencing plaque formation and dental health. It is also of clinical interest because, under certain conditions, it has been associated with opportunistic infections, especially in immunocompromised individuals. Its ability to survive in various environments and its complex interactions with other oral microbes highlight its importance in both health and disease." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia dentocariosa ATCC 17931 Positive Cocci No 1 1 Aerobe 37 Mesophilic HostAssociated Free living Homo sapiens Yes 762948 NC_014643.1 Bac0004117 Actinomyces sp. oral taxon 170 str. F0386 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 170 762963 AFBL00000000.1 Bac0004118 Parasutterella excrementihominis YIT 11859 "Parasutterella excrementihominis YIT 11859 is a gram-negative, rod-shaped bacterium that thrives in anaerobic environments, classified as an obligate anaerobe. It prefers mesophilic temperatures, typically growing optimally between 30°C and 37°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, specifically within the complex environment of the human gut. This species is predominantly found in the intestines of healthy humans, where it plays a significant role in the gut microbiome. Its presence is linked with the fermentation of dietary fibers and the metabolism of complex carbohydrates, contributing to the overall health of the gut ecosystem. The ability to utilize a wide range of organic substrates allows *Parasutterella excrementihominis* to adapt to different dietary regimens, which is crucial for maintaining gut homeostasis. As a gram-negative bacterium, *Parasutterella excrementihominis* possesses a thin peptidoglycan layer and an outer membrane rich in lipopolysaccharides. This structural characteristic not only plays a role in its pathogenicity and immune evasion but may also influence its interactions with the host's immune system. Research suggests that the microbiota composition, including species like *Parasutterella excrementihominis*, can impact metabolic functions and might even be linked to various health conditions, such as obesity and inflammatory bowel disease. Emerging studies indicate that, due to its metabolic capabilities, *Parasutterella excrementihominis* could potentially be harnessed in therapeutic applications aimed at restoring dysbiosis in the human gut microbiota. Its involvement in complex biochemical pathways further highlights the intricate relationships between gut microbes and human health." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Parasutterella Parasutterella excrementihominis Negative ovoid non-motile Facultative anaerobe non-spore-forming 762966 AFBP00000000.1 Bac0004119 Paraprevotella xylaniphila YIT 11841 "Paraprevotella xylaniphila YIT 11841 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperature ranges, functioning as a chemoheterotroph and is classified as an obligate anaerobe. This microbe primarily inhabits the human gastrointestinal tract, where it plays a significant role in the digestion of dietary fiber and the metabolism of complex polysaccharides. As a Gram-negative organism, Paraprevotella xylaniphila possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature contributes to its resilience in anaerobic environments, particularly within the gut, where oxygen levels are significantly low. The rod shape of the bacterium facilitates its motility in viscous environments, aiding in its colonization and interaction with other gut microbes. Being a mesophilic bacterium, Paraprevotella xylaniphila thrives optimally at moderate temperatures, typically between 30°C to 37°C, corresponding with the body temperature of its host. As a chemoheterotroph, it derives energy from organic compounds, utilizing complex carbohydrates and proteins as substrates for growth and reproduction. The obligate anaerobic nature of this microbe indicates that it cannot survive in the presence of oxygen, relying on fermentation processes to generate energy. In the human gut, Paraprevotella xylaniphila contributes to the overall health of the microbiome by breaking down dietary fibers that humans cannot digest on their own. This fermentation results in the production of short-chain fatty acids, which are beneficial for gut health and may exert systemic anti-inflammatory effects. Furthermore, recent research has suggested that the presence of Paraprevotella xylaniphila may be associated with various health benefits, including improved metabolic functions and a healthier immune response, highlighting its potential importance in maintaining gut homeostasis and overall human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella xylaniphila Negative ovoid non-motile Anaerobe non-spore-forming 762982 AFBR00000000.1 Bac0004120 Bacteroides clarus YIT 12056 "Bacteroides clarus YIT 12056 is an obligate anaerobe, chemoheterotrophic bacterium that produces energy through fermentation, exhibits a Gram-negative stain, is typically rod-shaped, and can be found in the human gut and other body sites such as the oral cavity and feces.As a member of the Bacteroides genus, Bacteroides clarus plays a crucial role in the human microbiome, particularly in the intestinal tract where it aids in the digestion of complex carbohydrates. The obligate anaerobic nature of this microbe means that it thrives in environments devoid of oxygen, making it particularly well-suited for the anaerobic conditions of the gut. Its chemoheterotrophic metabolism indicates that it relies on organic compounds for energy and carbon, utilizing nutrients derived from dietary sources or other microorganisms within the gut ecosystem. The Gram-negative characteristic of Bacteroides clarus is highlighted by its outer membrane, which contains lipopolysaccharides that contribute to its pathogenic potential under certain circumstances. Its rod shape allows for efficient movement and colonization within the complex microhabitats of the gastrointestinal tract. Bacteroides clarus is notably significant in maintaining gut health, as it competes with pathogenic bacteria, helps synthesize essential vitamins, and contributes to the overall balance of the microbiome. Dysbiosis, or an imbalance in microbial populations, can lead to conditions such as obesity and inflammatory bowel disease, underscoring the importance of this microbe in metabolic health. Furthermore, its potential interactions with the immune system may provide insights into future therapeutic approaches for various diseases." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides clarus Negative Anaerobe 762984 AFBM00000000.1 Bac0004121 Bacteroides fluxus YIT 12057 "Bacteroides fluxus YIT 12057 is a gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, is classified as a chemoheterotroph, and is an obligate anaerobe. This microbe is predominantly found in the human gut, where it plays a crucial role in the digestion of complex carbohydrates and the maintenance of gut health. Bacteroides fluxus is typically one of the many species of the Bacteroides genus that inhabit various body sites, including the intestines, oral cavity, and to a lesser extent, other regions such as the skin and respiratory tract. As a gram-negative bacterium, Bacteroides fluxus possesses a thin peptidoglycan layer surrounded by an outer membrane primarily composed of lipopolysaccharides, which can contribute to its virulence and influence immune responses. Its rod shape allows for efficient motility in the viscous environments of the gut, facilitating its interactions with other microbes and the host’s mucosal surfaces.Being a chemoheterotroph, Bacteroides fluxus relies on organic compounds obtained from the diet or from other gut microbes for energy and carbon. Its obligate anaerobic nature means that it thrives in environments devoid of oxygen, which is typical of the human gastrointestinal tract. Here, it engages in fermentation processes that contribute to the formation of short-chain fatty acids, essential for colon health and metabolic regulation. Bacteroides fluxus is also noteworthy due to its potential involvement in various health conditions, including obesity and inflammatory bowel disease. Its ability to break down dietary fibers and produce beneficial metabolites underscores its significance in human nutrition and the intricate balance of the gut microbiome. The exploration of this microbe continues to reveal its critical role in human health and disease prevention." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fluxus Negative rod non-motile Anaerobe 37 mesophilic non-spore-forming 763034 AFBN00000000.1 Bac0004122 Mesorhizobium huakuii 7653R Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium huakuii 763057 CP006581.2 Bac0004123 Streptococcus urinalis 2285-97 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus urinalis microaerophile 764291 AEUZ00000000.2 Bac0004124 Cutibacterium acnes HL110PA4 "Cutibacterium acnes HL110PA4 is a Gram-positive, rod-shaped bacterium classified as a nonsporulating anaerobe. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of its host organisms. As a host-associated bacterium, C. acnes HL110PA4 is commonly found in environments that are closely linked to mammalian skin, where it plays a role in the complex microbiota.↵↵The nonsporulating nature of C. acnes HL110PA4 indicates a reliance on stable environmental conditions for survival, which is characteristic of many anaerobic bacteria that inhabit host-associated environments. This organism's anaerobic metabolism suggests a niche adaptation that allows it to thrive in low-oxygen conditions commonly found within hair follicles and sebaceous glands. ↵↵Furthermore, the presence of C. acnes HL110PA4 in the skin microbiome highlights its potential significance in maintaining skin homeostasis and influencing host immune responses. Its ability to coexist within a diverse microbial community may contribute to the overall health of the skin, although the balance of such interactions can be critical, as disruptions may lead to dysbiosis. This strain exemplifies the intricate relationships between host-associated microbes and their environments, underscoring the importance of understanding microbial traits to elucidate their roles in broader ecological contexts." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 765080 ADYF00000000.1 Bac0004125 Desulfurococcus mucosus DSM 2162 "Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) is an extreme thermophilic anaerobic archaeon isolated from a hot solfataric spring, Iceland. It is resistant to high doses of ionizing radiation. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/48641). (HAMAP: DESM0)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus Desulfurococcus mucosus DSM 2162 Cocci No 1 1 Anaerobic Organotroph Hyperthermophilic Fresh water- Sulfur spring Free living Nonsporulating No 765177 NC_014961.1 Bac0004126 Mesorhizobium ciceri biovar biserrulae WSM1271 "Mesorhizobium ciceri bv. biserrulae strain WSM1271 was isolated from Biserrula pelecinus growing in Sardinia. B.pelecinus is an annual herbaceous legume suited to arid land. M.ciceri is able to nodulate B.pelecinus and Astragalus membranaceus, but not Cicer arietinum. This is the type strain for Mesorhizobium ciceri biovar biserrulae (adapted from PMID 17473255). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium ciceri WSM1271 Negative Bacilli Yes 1 2 Aerobic Chemoheterotroph Mesophilic Soil Symbiotic Biserrula pelecinus L Nonsporulating No 765698 NC_014923.1 Bac0004127 Marichromatium purpuratum 984 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Marichromatium Marichromatium purpuratum anaerobic 765910 NZ_CP007031.1 Bac0004128 Thiocystis violascens DSM 198 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thiocystis Thiocystis violascens anaerobic 765911 NC_018012.1 Bac0004129 Thioflavicoccus mobilis 8321 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thioflavicoccus Thioflavicoccus mobilis 765912 NC_019941.1 Bac0004130 Thiorhodococcus drewsii AZ1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thiorhodococcus Thiorhodococcus drewsii 765913 AFWT00000000.1 Bac0004131 Helicobacter pylori SJM180 "Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla Yes 1 2 Aerobic 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 765962 NC_014560.1 Bac0004132 Helicobacter pylori PeCan4 "Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori PeCan4 Negative Spirilla Yes 1 2 Aerobic 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 765963 NC_014556.1 Bac0004133 Shigella boydii 965-58 "Shigella boydii 965-58 is a Gram-negative, rod-shaped bacterium that primarily exhibits a cell arrangement of singles and pairs. It thrives optimally at 37.0°C, suggesting a close association with warm-blooded hosts. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds as an energy source, which aligns with its habitat being host-associated. Furthermore, S. boydii 965-58 is a facultative anaerobe, allowing it to adapt to varying oxygen levels within its host environment.↵↵The traits of S. boydii 965-58 highlight its specialized ecological niche within host organisms, where it likely competes for nutrients and interacts with the host's microbiota. Its ability to thrive at physiological temperatures and utilize organic substrates efficiently suggests that it may play a role in certain metabolic processes within the gut or associated tissues of its host. The facultative anaerobic nature of this strain also indicates its potential for survival and growth in diverse oxygen conditions, possibly allowing it to colonize different ecological niches within the host's gastrointestinal tract. Studying such traits in S. boydii 965-58 could provide insights into its ecological dynamics and interactions with both host and microbial community members in its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella boydii Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 766138 AKNA00000000.1 Bac0004134 Citreicella sp. 357 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Citreicella Citreicella sp. 357 766499 AJKJ00000000.1 Bac0004135 Arachnia propionica F0230a "Arachnia propionica F0230a is a Gram-positive, nonsporulating bacterium that exhibits a chemoheterotrophic metabolism, utilizing organic compounds as its energy source. This species demonstrates facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. The ability to adapt to varying oxygen levels suggests a versatile ecological niche, enabling Arachnia propionica F0230a to colonize diverse habitats.↵↵This organism is characterized by its metabolic flexibility, which may play a significant role in its survival and distribution across multiple environments. The facultative anaerobic nature implies that Arachnia propionica F0230a can efficiently exploit organic substrates in various ecological settings, potentially contributing to nutrient cycling and organic matter decomposition. Its presence in diverse habitats may indicate its ecological significance in microbial communities, where it could interact with other microorganisms and influence overall ecosystem dynamics." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Arachnia Arachnia propionica Positive No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 767029 NC_018142.1 Bac0004136 Serinicoccus chungangensis str. CD08_5 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Serinicoccus Serinicoccus chungangensis aerobic 767452 LQBL00000000.1 Bac0004137 Lactobacillus helveticus H10 "Lactobacillus helveticus H10 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic growth, allowing it to thrive in various environments. This species belongs to the genus Lactobacillus, which is widely recognized for its role in food fermentation and its presence in diverse habitats, including dairy products, plant materials, and the gastrointestinal tracts of animals.↵↵The ability of L. helveticus H10 to grow in both aerobic and anaerobic conditions enhances its adaptability, making it suitable for various fermentation processes. This trait is particularly significant in the production of dairy products, where it contributes to the flavor and texture of cheeses and yogurts. In addition, the strain’s positive Gram stain indicates a thick peptidoglycan layer, which is characteristic of many lactic acid bacteria and contributes to its structural integrity and resistance to certain environmental stresses.↵↵The presence of L. helveticus H10 in diverse habitats suggests its potential role in microbial communities, where it may participate in the fermentation of carbohydrates and influence the overall microbial balance. This adaptability, combined with its beneficial metabolic activities, positions L. helveticus H10 as a key player in both food production and the maintenance of gut health in various hosts. Further exploration of its ecological interactions may provide insights into its contributions to fermentation processes and its potential applications in probiotic formulations." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 767462 NC_017467.1 Bac0004138 Halomicrobium zhouii Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium zhouii 767519 FOZK00000000.1 Bac0004139 Haloquadratum walsbyi C23 "Haloquadratum walsbyi C23 is a square-shaped phototrophic microbe that thrives in aquatic environments. This organism is notable for its distinctive square morphology and is typically found as single cells rather than in clusters or colonies. As a phototroph, Haloquadratum walsbyi C23 utilizes light as its primary energy source, which enables it to carry out photosynthesis in its saline habitat.↵↵The square shape of Haloquadratum walsbyi C23 is particularly interesting, as it is one of the few known organisms exhibiting this unique cellular morphology. This characteristic may confer advantages in light capture and nutrient absorption within its aquatic ecosystem. The organism’s ability to thrive in high-salinity environments suggests that it possesses specialized adaptations that facilitate osmotic balance, which is critical for survival in such conditions.↵↵The ecological role of Haloquadratum walsbyi C23 likely includes contributions to primary production in its habitat, influencing nutrient cycling and energy flow within the aquatic ecosystem. Its phototrophic nature suggests that it may play a significant role in carbon fixation, potentially supporting a diverse microbial community. The presence of Haloquadratum walsbyi C23 in extreme environments underscores the versatility and adaptability of microbial life, revealing insights into the evolutionary pathways that allow organisms to exploit a wide range of ecological niches." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloquadratum Haloquadratum walsbyi SquareShaped No 1 1 Phototroph Mesophilic Aquatic Free living Singles 768065 NC_017460.1 Bac0004140 Calditerrivibrio nitroreducens DSM 19672 "Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) is an anaerobic, moderately thermophilic, nitrate-reducing, Gram-negative bacterium isolated from hot spring water from Yumata, Nagano, Japan. The cells are non-sporulating, motile by means of a single polar flagellum, vibrio-shaped and 1.4-2.0 um long. The optimal temperature for growth is 55 degrees Celsius. The pH range for growth is between 7.0-7.5. C.nitroreducens grows best in basal medium without the addition of NaCl. Acetate, pyruvate, lactate, fumarate, succinate, malate, yeast extract, peptone and Casamino acids are utilized as electron donors, with nitrate as the only electron acceptor. Ammonium is the end product from nitrate. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/49523 and PMID: 18599715). (EBI Integr8)" Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens DSM 19672 Negative ovoid No 1 2 Anaerobic 55 Thermophilic HostAssociated Free living Nonsporulating No 768670 NC_014749.1 Bac0004141 Desulfurococcus amylolyticus DSM 16532 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus Desulfurococcus amylolyticus 768672 NC_018001.1 Bac0004142 Desulfosporosinus orientis DSM 765 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus orientis anaerobic 768706 NC_016584.1 Bac0004143 Desulfosporosinus youngiae DSM 17734 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus youngiae anaerobic 768710 NZ_CM001441.1 Bac0004144 Peptoniphilus sp. oral taxon 836 str. F0141 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus sp. oral taxon 836 768724 AEAA00000000.1 Bac0004145 Streptococcus mitis bv. 2 str. F0392 "Streptococcus mitis bv. 2 strain F0392 is a Gram-positive coccus that typically appears in pairs or chains. This bacterium is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. S. mitis bv. 2 is notably host-associated, suggesting a close association with specific hosts, potentially including humans or other animals, where it may play a role in the microbiota.↵↵The morphological characteristics of S. mitis bv. 2, including its coccal shape and arrangement in pairs or chains, are consistent with other members of the Streptococcus genus, which are known for their diverse physiological and metabolic traits. The facultative anaerobic nature of this strain indicates its adaptability to varying oxygen levels, which is a significant advantage for survival in dynamic host environments.↵↵Further research may shed light on the specific ecological roles of S. mitis bv. 2 within its host-associated habitat, particularly in relation to its interactions with other microbial communities and its potential influence on host health. Understanding these interactions could provide insights into the complex dynamics of host-associated microbiomes and their contributions to the overall health and stability of the ecosystem." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 768726 AFUO00000000.1 Bac0004146 Fervidobacterium pennivorans DSM 9078 Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium pennivorans 771875 NC_017095.1 Bac0004147 Sinorhizobium sp. CCBAU 05631 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. CCBAU 05631 794846 NZ_CP023064.1 Bac0004148 Thermodesulfobacterium geofontis OPF15 "Thermodesulfobacterium geofontis OPF15 is a rod-shaped, anaerobic bacterium predominantly found in freshwater environments. This microbe thrives in oxygen-depleted conditions, where it plays a crucial role in biogeochemical cycles. The rod morphology of T. geofontis OPF15 is indicative of its adaptation to its specific habitat, which may influence its motility and nutrient uptake mechanisms. ↵↵As an anaerobe, T. geofontis OPF15 contributes to the degradation of organic matter in freshwater ecosystems, potentially facilitating the transformation of sulfur compounds. The metabolic pathways utilized by this organism are likely to be pivotal in maintaining the redox balance within its habitat. Given its anaerobic nature, T. geofontis OPF15 may also interact with various microbial communities, impacting the overall microbial diversity and functioning of freshwater ecosystems.↵↵Overall, the presence of Thermodesulfobacterium geofontis OPF15 in freshwater environments highlights the importance of anaerobic microorganisms in nutrient cycling and ecosystem dynamics, providing insights into the complexities of microbial interactions in low-oxygen conditions." Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium geofontis Rod Anaerobic Thermophilic Fresh water Free living 795359 NC_015682.1 Bac0004149 Halalkalicoccus jeotgali B3 "Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) is non-motile cocci, extreme halophilic, Gram-variable archaeon isolated from shrimp jeotgal, a traditional Korean fermented seafood. (adapted from PMID: 20601480). (HAMAP: HALJB)" Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halalkalicoccaceae Halalkalicoccus Halalkalicoccus jeotgali B3 Cocci No 1 1 Mesophilic HostAssociated Shrimp No 795797 NC_014300.1 Bac0004150 Kangiella spongicola str. ATCC BAA-2076 "Kangiella spongicola strain ATCC BAA-2076 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This organism is part of the genus Kangiella, which is known for its association with marine and sponge habitats. The Gram-negative nature suggests a complex cell wall structure that may confer certain advantages in its ecological niche, including resistance to some antimicrobial agents.↵↵The preference for aerobic conditions indicates that Kangiella spongicola str. ATCC BAA-2076 likely engages in oxidative metabolism, utilizing oxygen as a terminal electron acceptor during energy production. The optimal growth temperature of 29.0°C suggests that this microbe is well-adapted to moderately warm marine environments, aligning with typical conditions found in its natural habitat.↵↵Understanding the physiological characteristics of Kangiella spongicola str. ATCC BAA-2076 can provide insights into its role in marine ecosystems, particularly in nutrient cycling and interactions with sponge hosts. The adaptation to aerobic conditions may also imply potential involvement in the degradation of organic matter within these environments, contributing to the overall health and functioning of marine ecosystems. Further research into this strain could elucidate its specific ecological roles and potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Kangiellales Kangiellaceae Kangiella Kangiella spongicola Gram-negative rod non-motile aerobic 29 mesophilic 796379 QICH00000000.1 Bac0004151 Bacillus methanolicus MGA3 "Bacillus methanolicus MGA3 is a thermophilic, chemoheterotrophic, gram-positive bacterium characterized by its rod-shaped morphology and a preference for aerobic conditions. As a member of the Bacillus genus, it thrives in high-temperature environments, often found in geothermally heated soils and compost. This organism is unique in its ability to metabolize methanol, which serves as a carbon source, reflecting its adaptation to specific ecological niches where methanol is prevalent.The thermophilic nature of Bacillus methanolicus MGA3 allows it to grow optimally at elevated temperatures, making it a subject of interest for biotechnological applications, particularly in the production of biofuels and bioproducts. The bacterium's ability to utilize methanol as an energy source underscores its role in carbon cycling, particularly in environments where methanol is produced by other organisms or during the degradation of organic matter. Being gram-positive, Bacillus methanolicus MGA3 possesses a thick peptidoglycan layer, which contributes to its robustness in various environments. The rod-shaped cells can form spores, enhancing survival during unfavorable conditions, a characteristic that is common in the Bacillus genus. This microbe has garnered attention for its potential in industrial biotechnology, particularly in the synthesis of single-cell proteins and bioplastics. Additionally, its enzymatic systems are being explored for their applications in bioconversion processes, offering sustainable alternatives in various industries. The study of Bacillus methanolicus MGA3 not only enhances our understanding of microbial ecology but also paves the way for innovations in environmentally friendly technologies, showcasing the intersection of microbiology and sustainability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus methanolicus Positive Rod No 1 Facultative anaerobe 50 Chemoheterotroph Mesophilic Soil Sporulating 796606 NZ_CP007740.1 Bac0004152 Stomatobaculum longum str. ACC2 "Stomatobaculum longum str. ACC2 is a rod-shaped bacterium characterized as Gram-negative, with a non-spore-forming nature and an optimal growth temperature of 37.0°C. This anaerobic microbe thrives in oxygen-deprived environments, suggesting its potential role in specific ecological niches where oxygen is limited. ↵↵The combination of its rod shape and anaerobic requirements indicates a specialized adaptation to habitats such as the gastrointestinal tract of animals or the oral cavity, where similar organisms are often found. The absence of sporulation suggests that S. longum str. ACC2 relies on alternative survival strategies in the face of environmental stressors, possibly maintaining viability through metabolic versatility or symbiotic relationships with other microbial taxa.↵↵Further exploration of S. longum str. ACC2 may provide insights into its metabolic pathways and interactions within its habitat, contributing to our understanding of microbial community dynamics. The organism's characteristics could also inform studies on the roles of anaerobic bacteria in health and disease, particularly in maintaining homeostasis in complex microbial ecosystems." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Stomatobaculum Stomatobaculum longum Gram-negative / Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 796942 AGEL00000000.1 Bac0004153 Halopiger xanaduensis SH-6 Halopiger xanaduensis SH-6.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halopiger Halopiger xanaduensis SH-6 No Mesophilic Salinewater- Soil Free living 797210 NC_015666.1 Bac0004154 Halostagnicola larsenii XH-48 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halostagnicola Halostagnicola larsenii 797299 NZ_CP007055.1 Bac0004155 Halovivax ruber XH-70 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax ruber 797302 NC_019964.1 Bac0004156 Cardiobacterium valvarum F0432 Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Cardiobacterium Cardiobacterium valvarum 797473 AGCM00000000.1 Bac0004157 Thermus thermophilus JL-18 "Thermus thermophilus JL-18 is a Gram-negative, aerobic bacterium that thrives in specialized habitats characterized by high-temperature environments. This thermophilic microorganism is notable for its optimal growth temperature, which is typically around 70°C, although the provided data indicates that it can also be found in environments where temperatures may reach extremes conducive to its proliferation. ↵↵As an aerobe, Thermus thermophilus JL-18 requires oxygen for its metabolic processes, positioning it within environments that support aerobic respiration. Its adaptability to high temperatures suggests a variety of unique biochemical pathways that may contribute to its survival and metabolic efficiency under such conditions.↵↵The specialized habitats of Thermus thermophilus JL-18 are likely to include hot springs and geothermal areas, where thermal gradients create niches that support its growth. This adaptation not only highlights the organism's resilience but also underscores its potential biotechnological applications, particularly in processes requiring high-temperature enzymes, such as DNA polymerases used in polymerase chain reactions (PCR). The unique physiological characteristics of Thermus thermophilus JL-18 make it an important model organism for studying thermophilic adaptations and enzyme stability, providing insights into microbial life in extreme environments." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus Negative NA NA 1 2 Aerobe 0 Thermophilic Specialized 798128 NC_017587.1 Bac0004158 Spiroplasma mirum ATCC 29335 str. SMCA Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma mirum microaerophile 838561 NZ_CP006720.1 Bac0004159 Salinisphaera orenii MK-B5 "Salinisphaera orenii MK-B5 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and a preference for an optimal growth temperature of 37.0°C. This organism does not form spores, which suggests a reliance on vegetative growth under suitable environmental conditions. The Gram-negative nature of Salinisphaera orenii MK-B5 indicates a complex cell wall structure, typically consisting of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interaction with the environment and other microbial communities.↵↵The aerobic requirement of Salinisphaera orenii MK-B5 implies that it utilizes oxygen for its metabolic processes, potentially influencing its habitat preferences and competitive interactions within its ecosystem. The specific temperature range for optimal growth suggests that this bacterium may thrive in environments that maintain a stable, warm temperature, possibly reflecting conditions found in certain marine or terrestrial niches.↵↵Overall, the traits of Salinisphaera orenii MK-B5, particularly its aerobic lifestyle and non-sporulating nature, could provide insights into its ecological role, particularly in nutrient cycling and interactions with other microbes in oxygen-rich environments. Further research may elucidate its contributions to microbial diversity and ecosystem functioning in the habitats it occupies." Pseudomonadati Pseudomonadota Gammaproteobacteria Salinisphaerales Salinisphaeraceae Salinisphaera Salinisphaera orenii Gram-negative rod aerobic 37 mesophilic non-spore-forming 856730 AYKH00000000.1 Bac0004160 Deinococcus reticulitermitis "Deinococcus reticulitermitis is a Gram-negative, spherical bacterium that thrives optimally at a temperature of 29.0°C. This microbe is categorized as non-spore-forming, which suggests that it relies on other survival mechanisms in its environment rather than forming spores to withstand adverse conditions.↵↵The spherical morphology of D. reticulitermitis may contribute to its adaptability in various habitats, potentially influencing its interactions with other microorganisms and its overall ecological niche. The Gram-negative characteristic indicates a distinct cell wall structure, which may affect its susceptibility to certain antibiotics and its interactions with the environment.↵↵While specific ecological roles and interactions with other organisms remain to be fully elucidated, the optimal growth temperature suggests that D. reticulitermitis may inhabit environments with moderate thermal conditions, potentially contributing to microbial communities in terrestrial ecosystems. This bacterium's resilience and adaptability, despite its lack of sporulation, may allow it to occupy a unique ecological niche, possibly influencing nutrient cycling or participating in symbiotic relationships within its habitat. Further research could illuminate its specific ecological roles and its potential applications in microbiology or biotechnology." Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus reticulitermitis Gram-negative sphere non-motile 29 mesophilic non-spore-forming 856736 FNZA00000000.1 Bac0004161 Micavibrio aeruginosavorus ARL-13 Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus 856793 NC_016026.1 Bac0004162 Methylomonas methanica MC09 This organism will be used for comparative analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas methanica MC09 Aerobic Mesophilic Marine-Soil Free living 857087 NC_015572.1 Bac0004163 Streptococcus mutans SM6 "Streptococcus mutans SM6 is a Gram-positive coccus that typically forms chains or pairs and is optimized for growth at an optimal temperature of 37.0°C. This bacterium is classified as a facultative anaerobe, indicating its capacity to thrive in both aerobic and anaerobic environments, which allows it to adapt to various host-associated habitats. ↵↵As a member of the Streptococcus genus, S. mutans SM6 is primarily associated with the oral cavity of humans and other mammals, where it plays a significant role in the dental microbiome. Its ability to form biofilms on tooth surfaces contributes to its ecological niche, facilitating its survival and proliferation in the presence of varying oxygen levels. ↵↵The facultative anaerobic nature of S. mutans SM6 may also confer a competitive advantage over other oral microbes, particularly in environments where oxygen levels fluctuate. This adaptability enhances its persistence in the complex ecosystem of the oral cavity, where it can actively participate in carbohydrate metabolism, particularly the fermentation of sugars, leading to the production of organic acids. ↵↵Overall, the unique combination of traits in S. mutans SM6 underscores its role as a significant player in oral ecology, with implications for understanding microbial interactions and their consequences for dental health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 857119 AHSR00000000.1 Bac0004164 Halopseudomonas aestusnigri str. VGXO14 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas aestusnigri Marine 857252 NBYK00000000.1 Bac0004165 Prevotella histicola F0411 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella histicola 857291 AFXP00000000.1 Bac0004166 Streptococcus intermedius F0395 "Streptococcus intermedius F0395 is a Gram-positive, cocci-shaped bacterium characterized by its facultative anaerobic metabolism. This organism is part of the Streptococcus genus, which is known for its spherical cell morphology and ability to grow in both the presence and absence of oxygen. As a facultative anaerobe, S. intermedius F0395 can utilize aerobic respiration when oxygen is available, but it can also switch to fermentation pathways in oxygen-depleted environments.↵↵The adaptability of S. intermedius F0395 to varying oxygen levels suggests its potential role in diverse ecological niches, particularly in environments where fluctuating oxygen concentrations occur. This trait may facilitate its survival and growth in complex microbial communities, such as those found in human oral cavities or soft tissues, where it could engage in symbiotic or competitive interactions with other microorganisms. The ability to thrive under different oxygen conditions may also influence its metabolic processes and its interactions within the microbiome, contributing to the overall dynamics and health of its habitat. Understanding the specific ecological roles and interactions of S. intermedius F0395 could provide valuable insights into microbial ecology and the maintenance of microbial diversity in various environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus intermedius Positive Cocci Facultative anaerobe 857292 AFXN00000000.1 Bac0004167 Candidatus Dactylopiibacterium carminicum Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Candidatus Dactylopiibacterium Candidatus Dactylopiibacterium carminicum 857335 NMRN00000000.1 Bac0004168 Janibacter indicus str. YFY001 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter indicus 857417 NZ_CP013290.1 Bac0004169 Janibacter indicus Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter indicus 857417 FWXN00000000.1 Bac0004170 Thermoanaerobacterium xylanolyticum LX-11 Thermoanaerobacterium xylanolyticum LX-11.This is the type strain. This genome will be used for comparative analysis. (NCBI BioProject: bp_list[1]) Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium xylanolyticum LX-11 Negative Bacilli Yes Anaerobic 45 Thermophilic Fresh water- Sediment Free living Pairs- Singles Sporulating 858215 NC_015555.1 Bac0004171 Bradyrhizobium arachidis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium arachidis 858423 FPBQ00000000.1 Bac0004172 Photobacterium jeanii str. R-40508 "Photobacterium jeanii str. R-40508 is a Gram-negative, ovoid-shaped bacterium characterized as a facultative aerobe/anaerobe, exhibiting optimal growth at a temperature of 29.0°C. This microbe does not form spores, indicating a reliance on other survival mechanisms under varying environmental conditions. ↵↵The Gram-negative cell wall structure of P. jeanii str. R-40508 may contribute to its adaptability in diverse habitats, allowing it to thrive in both aerobic and anaerobic environments. The ovoid morphology suggests potential adaptations for nutrient uptake and colonization in specific ecological niches. ↵↵Given its optimal growth temperature, P. jeanii str. R-40508 may be well-suited for life in environments that experience moderate thermal conditions, such as shallow marine habitats or estuarine systems. This organism could play a role in nutrient cycling within these ecosystems, although specific ecological interactions remain to be elucidated. Further investigation into its metabolic capabilities and ecological roles could provide insights into its contributions to microbial communities and biogeochemical processes in its native environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium jeanii Gram-negative ovoid facultative aerobe/anaerobe 29 mesophilic non-spore-forming 858640 LVHF00000000.1 Bac0004173 Cytobacillus kochii Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus kochii 859143 NZ_CP022983.1 Bac0004174 Capnocytophaga canimorsus Cc5 "Capnocytophaga canimorsus Cc5.G. R. Cornelis' lab, Biozentrum, Basel University, Switzerland.Capnocytophaga canimorsus clinical isolate 5 does not express any classical complex virulence function (e.g. T3SS, T4SS or T6SS) but presents a very high relative number of surface-exposed complexes classically encoded by the so called polysaccharide utilization loci (PULs), a hallmark of the CFB group. Recent works in our lab showed that PUL-encoded complexes are not only essential for feeding on host polysaccharides but also required for local control of host immunity by Cc5. The genome of Cc5 is thus a valuable tool for the understanding of commensal cross-talks in mammalians oral cavity and their pathogenic extend when host features change. (NCBI BioProject: bp_list[1])" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga canimorsus Cc5 Negative Rod No 1 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Nonsporulating 860228 NC_015846.1 Bac0004175 Kibdelosporangium phytohabitans str. KLBMP1111 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kibdelosporangium Kibdelosporangium phytohabitans 860235 NZ_CP012752.1 Bac0004176 Sphingobium indicum B90A "Sphingobium indicum B90A is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic mode of respiration. The optimal growth temperature for this microbe is approximately 28.0°C, suggesting a preference for moderate climate conditions typical of many soil habitats. As an aerobic organism, S. indicum B90A relies on oxygen for its metabolic processes, which may influence its distribution within soil profiles where oxygen availability varies.↵↵The identification of S. indicum B90A contributes to our understanding of microbial diversity in terrestrial ecosystems and highlights its potential role in biogeochemical cycles. Given its aerobic nature and specific habitat preferences, this bacterium may play a crucial part in the degradation of organic matter and the cycling of nutrients in soil environments. Further exploration of its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation or soil health management." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium indicum Negative Rod No 1 2 Aerobic 28 Mesophilic Terrestrial Free living 861109 NZ_CP013070.1 Bac0004177 Vibrio xiamenensis "Vibrio xiamenensis is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in both oxygen-rich and oxygen-depleted environments. This microbe is optimally adapted to temperatures around 32.0 °C, which suggests a preference for mesophilic conditions, often encountered in aquatic environments. ↵↵The Gram-negative nature of V. xiamenensis indicates the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its environmental adaptability and potential interactions with other microorganisms. The rod shape of this bacterium is typical of the Vibrio genus and may contribute to its motility and colonization abilities in various habitats.↵↵Vibrio xiamenensis is likely to be found in marine or estuarine environments, where fluctuating oxygen levels and temperatures can be common. The facultative nature of its oxygen requirement suggests that it can effectively utilize available resources regardless of the oxygen concentration, which may provide it with a competitive advantage in diverse microbial communities.↵↵Overall, the ecological versatility of V. xiamenensis, characterized by its ability to thrive in varied oxygen conditions and its temperature preference, positions it as a notable player in nutrient cycling processes within aquatic ecosystems. Its adaptive traits may also indicate a role in the decomposition of organic matter in these environments, contributing to the overall health and functioning of aquatic systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio xiamenensis Gram-negative rod facultative aerobe/anaerobe 32 mesophilic 861298 FNDD00000000.1 Bac0004178 Gemmatirosa kalamazoonensis str. KBS708 Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis 861299 NZ_CP007128.1 Bac0004179 Glutamicibacter arilaitensis Re117 str. RE117 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter arilaitensis 861360 NC_014548.1 Bac0004180 Anaeroglobus geminatus F0357 "Anaeroglobus geminatus F0357 is a nonsporulating microbe classified within the genus Anaeroglobus, known for its role in anaerobic environments. It has garnered attention due to its potential implications in human health and the microbiome. This bacterium demonstrates a unique capability to thrive in environments devoid of oxygen, which may include various anoxic habitats such as the gastrointestinal tracts of animals and humans, as well as sediments in water bodies. As a member of the broader community of anaerobic bacteria, A. geminatus F0357 likely engages in complex metabolic pathways that enable it to utilize organic substrates for energy, contributing to the biogeochemical cycling of nutrients in its habitat. Understanding its metabolic capabilities can provide insights into its ecological roles, including involvement in the fermentation processes that take place within the gut microbiome, potentially influencing digestion, immune function, and overall host health. Moreover, A. geminatus F0357 may express symbiotic relationships with other microorganisms in the anaerobic environment, interacting with bacterial species to enhance metabolic efficiency or to maintain ecosystem balance. Its presence can be a key indicator of environmental health and stability within anoxic sites, underscoring the importance of anaerobes in various ecological niches. The study of A. geminatus F0357 not only enriches our understanding of microbial diversity but also paves the way for exploring its therapeutic potentials in managing gut dysbiosis and other health conditions." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera geminata No 1 anaerobic Nonsporulating 861450 AGCJ00000000.1 Bac0004181 Edaphosphingomonas laterariae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Edaphosphingomonas Edaphosphingomonas laterariae 861865 FZOS00000000.1 Bac0004182 Neisseria meningitidis ATCC 13091 "Neisseria meningitidis ATCC 13091 is a Gram-negative coccal bacterium that typically arranges itself in pairs, a characteristic that aids in its identification under microscopic examination. This organism thrives optimally at a temperature of 35.0°C, which closely reflects the human body temperature, indicating its adaptation to host-associated habitats. As an aerobic microbe, N. meningitidis requires oxygen for its metabolic processes, further aligning its environmental preferences with those found in the human host.↵↵In terms of habitat, N. meningitidis is predominantly associated with human hosts, where it can exist as a commensal organism in the nasopharynx of asymptomatic carriers. This relationship highlights the bacterium's potential for transmission, which is facilitated by close contact among individuals. The ability of this strain to survive and proliferate in human-associated environments underlines its significant role in public health considerations. ↵↵Given its specific habitat and oxygen requirements, N. meningitidis ATCC 13091 exemplifies how certain microbial traits can influence the ecology of host-associated microbiomes, potentially affecting interactions within the human microbiota and the dynamics of infectious disease transmission." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 862513 AEEF00000000.1 Bac0004183 Hoylesella marshii DSM 16973 = JCM 13450 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella marshii 862515 AEEI00000000.1 Bac0004184 Peptoniphilus duerdenii ATCC BAA-1640 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus duerdenii anaerobic 862517 AEEH00000000.1 Bac0004185 Streptomyces sp. SirexAA-E str. ACTE Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SirexAA-E 862751 NC_015953.1 Bac0004186 Haemophilus parainfluenzae T3T1 "Haemophilus parainfluenzae T3T1 is a Gram-negative, rod-shaped microorganism that thrives in temperatures between 25-30°C, categorizing it as a mesophilic bacterium. It is a chemoheterotroph, utilizing organic compounds as its energy source and carbon source. This microbe produces energy through the process of respiration, utilizing the citric acid cycle and oxidative phosphorylation. During Gram staining, Haemophilus parainfluenzae T3T1 takes on a negative reaction, indicating the absence of peptidoglycan in its cell wall. Its rod-shaped morphology is characteristic of many bacteria, with the cell typically measuring around 1-3 μm in length. Since it is found in various body sites across all possible species, Haemophilus parainfluenzae T3T1 can be considered a commensal or opportunistic pathogen, often colonizing the respiratory tract, skin, and mucous membranes. This microbe is an obligate anaerobe, requiring a low-oxygen environment to thrive. In the absence of oxygen, it can grow and multiply efficiently. However, in the presence of oxygen, it may not survive or grow well, making it sensitive to aerobic conditions. Haemophilus parainfluenzae T3T1 is a type of Haemophilus bacterium, which is known to cause respiratory tract infections, such as otitis media and bronchitis, as well as other diseases like meningitis and septicemia. Furthermore, strain T3T1 is particularly noteworthy for its ability to infect the middle ear, leading to hearing loss and chronic otitis media in some cases. Despite its pathogenic potential, research on Haemophilus parainfluenzae T3T1 has contributed significantly to our understanding of the molecular mechanisms underlying bacterial infections, providing valuable insights for the development of effective treatments and vaccines." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae T3T1 Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living Yes 862965 NC_015964.1 Bac0004187 Streptococcus intermedius B196 "Streptococcus intermedius B196 is a Gram-positive coccus that exhibits a facultative anaerobic metabolism. This microbe is characterized by its spherical shape, which is typical of the Streptococcus genus, and its ability to thrive in both oxygen-rich and oxygen-poor environments. As a facultative anaerobe, S. intermedius B196 can switch between aerobic respiration and fermentation processes, allowing it to adapt to varying environmental conditions and potentially diverse niches within microbial communities.↵↵The coccoid morphology of S. intermedius B196 suggests a possible role in forming biofilms, which are complex microbial structures that can adhere to surfaces and provide protection against environmental stresses. This characteristic may enhance its survival in fluctuating habitats and contribute to its interactions with other microorganisms. Furthermore, the ability to grow under both aerobic and anaerobic conditions may facilitate its colonization in various ecological niches, including those with limited oxygen availability.↵↵Understanding the metabolic flexibility and morphological characteristics of S. intermedius B196 can provide insights into its ecological role, particularly in environments where oxygen levels fluctuate. This adaptability may allow S. intermedius B196 to play a significant role in microbial consortia, influencing nutrient cycling and community dynamics in its habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus intermedius Positive Cocci Facultative anaerobe 862967 NC_022246.1 Bac0004188 Trinickia symbiotica str. JPY 581 "Trinickia symbiotica strain JPY 581 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 37.0°C. This strain is characterized by its non-spore-forming nature, indicating that it does not produce spores as a means of reproduction or survival under unfavorable conditions. The aerobic requirement suggests that T. symbiotica str. JPY 581 relies on oxygen for its metabolic processes, which may influence its habitat preferences and interactions within its ecosystem.↵↵Given its optimal growth temperature, this bacterium may be well-suited for environments that mimic mammalian body temperatures, potentially indicating a symbiotic relationship with host organisms. The rod shape of T. symbiotica str. JPY 581 may facilitate motility and nutrient absorption in its habitat, contributing to its ecological versatility. Further studies could elucidate the specific ecological roles this microbe plays, especially in relation to its potential interactions with other microorganisms or host organisms in its environment. Understanding these dynamics may provide insights into microbial community structures and functions, particularly in ecosystems where aerobic bacteria are prevalent." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia symbiotica Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 863227 PNYC00000000.1 Bac0004189 Xanthomonas hortorum pv. carotae str. M081 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hortorum 863365 NZ_CM002307.1 Bac0004190 Parascardovia denticolens DSM 10105 = JCM 12538 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Parascardovia Parascardovia denticolens 864564 NZ_CM001148.1 Bac0004191 [Eubacterium] yurii subsp. margaretiae ATCC 43715 "Eubacterium yurii subsp. margaretiae ATCC 43715 is a nonsporulating, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, relying on the breakdown of complex organic matter for its metabolic needs. ↵↵E. yurii subsp. margaretiae is known to inhabit multiple environments, suggesting a versatile ecological role. Its anaerobic nature indicates that it likely occupies niches where oxygen is limited or absent, potentially contributing to various biogeochemical processes, such as organic matter decomposition and nutrient cycling in anaerobic ecosystems. ↵↵The adaptability of E. yurii subsp. margaretiae to different habitats underscores its potential significance in microbial communities, where it may interact with other microorganisms and contribute to the maintenance of ecosystem functions. Understanding the ecological roles of such bacteria can help elucidate their contributions to soil health, fermentation processes, and anaerobic digestion systems." Bacillati Bacillota Clostridia Peptostreptococcales Filifactoraceae Peptoanaerobacter [Eubacterium] yurii Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 864565 AEES00000000.1 Bac0004192 Streptococcus mitis ATCC 6249 "Streptococcus mitis ATCC 6249 is a Gram-positive coccus that typically arranges itself in chains or pairs. This organism is nonsporulating and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. mitis ATCC 6249 is frequently found in the human oral cavity and respiratory tract, where it may play a role in the complex microbial communities of these environments.↵↵The ability of S. mitis to grow in varying oxygen conditions suggests a metabolic versatility that may contribute to its survival and interactions with other microbial species within the host. This adaptability, coupled with its communal lifestyle, allows S. mitis ATCC 6249 to participate in processes such as biofilm formation, which is critical for maintaining ecological balance in its native habitats. The presence of this strain in the oral microbiome highlights its potential role in both health and disease, as it can interact with other pathogens, influencing the overall microbial dynamics. Understanding the traits of S. mitis ATCC 6249 may provide insights into its contributions to oral health and its interactions within the broader context of human microbiota." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 864567 AEEN00000000.1 Bac0004193 Streptococcus sp. oral taxon 071 str. 73H25AP Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. oral taxon 071 864570 AEEP00000000.1 Bac0004194 Leptolyngbyaceae cyanobacterium JSC-12 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbyaceae cyanobacterium JSC-12 864702 AJUB00000000.1 Bac0004195 Weeksella virosa DSM 16922 "Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) is a strictly aerobic, chemoorganotrophic, nonsaccharolytic Gram-negative bacterium isolated from genitourinary tract samples, predominantly from women, in North Carolina, USA. W. virosa are also detected by cultural methods in the oral cavity, the genitourinary tract of man, in clinical specimens of pigs, the urine of a cow with bladder carcinoma, and in the midgut of a Brazilian dipteran. W. virosa occurs mainly as an inhabitant of mucosa of warm-blooded animals and healthy man. The cells are rod-shaped with parallel sides and rounded ends. Colonies on nutrient agar appear circular and low convex with entire edges, smooth, shining and mucoid, reaching 2mm in diameter after 24h. Most strains produce a diffusible dark brown pigment on tyrosine-containing agar. W. virosa grows at 42 degrees Celsius but not at 5 degrees Celsius. It is able to utilize beta-hydroxybutyrate as a substrate and to produce indole. W.virosa is susceptible to most beta-lactams, tetracycline, chloramphenicol, nalidixic acid, erythromycin and sulfamethox-azole-trimethoprim. (Adapted from: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072086/pdf/sigs.1603927.pdf). (EBI Integr8)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Weeksella Weeksella virosa DSM 16922 Negative Rod No 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Nonsporulating No 865938 NC_015144.1 Bac0004196 Helicobacter pylori F16 "Helicobacter pylori F16 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, suggesting a preference for environments within warm-blooded hosts. ↵↵As a member of the Helicobacter genus, H. pylori F16 likely exhibits the well-documented features associated with this group, including a helical morphology that may facilitate its movement through viscous environments, such as mucus layers in the gastric epithelium. Its microaerophilic nature indicates that it requires reduced levels of oxygen for growth, which is typically found in the gastric environment where it resides.↵↵This bacterium's adaptation to a host-associated lifestyle highlights its potential role in the complex interactions within the gastrointestinal microbiome, particularly in relation to the stomach's unique biochemical milieu. The ability to thrive at 37.0°C may enhance its competitive advantage in colonizing specific niches within the host, allowing for potential interactions with the host's immune responses and other microbial inhabitants. Understanding Helicobacter pylori F16's traits may provide insights into its ecological role in the gastric environment and its interactions with the host's health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 866344 NC_017368.1 Bac0004197 Helicobacter pylori F30 "Helicobacter pylori F30 is a Gram-negative bacterium characterized by its spirilla shape and the presence of single cells in arrangement. This microbe thrives optimally at a temperature of 37.0°C and is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth. H. pylori F30 is typically found in host-associated habitats, where it may colonize the gastric mucosa of various hosts.↵↵The microaerophilic nature of H. pylori F30 suggests its adaptation to environments with limited oxygen availability, such as the human stomach, which has a unique microenvironment conducive to its survival and proliferation. This adaptation may contribute to its role in the gastric ecosystem, influencing both the microbial diversity and the host's physiological responses. Understanding the growth conditions and environmental preferences of H. pylori F30 can provide insights into its interactions within the host and the potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 866345 NC_017365.1 Bac0004198 Halomonas sp. KHS3 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. KHS3 866350 JWHY00000000.1 Bac0004199 Finegoldia magna BVS033A4 "Finegoldia magna BVS033A4 is a Gram-positive cocci that thrives in anaerobic environments. This microbe is characterized by its spherical shape, which is typical of cocci, and its ability to exist in multiple habitats, suggesting a versatile ecological adaptation. As an anaerobe, Finegoldia magna BVS033A4 does not require oxygen for growth, which may allow it to occupy niches that are inhospitable to aerobic organisms. ↵↵The presence of this organism in various habitats indicates a potential role in diverse microbial communities, possibly contributing to nutrient cycling and organic matter degradation in anaerobic conditions. Given its anaerobic nature, Finegoldia magna BVS033A4 may play a significant role in environments such as deep soil layers, sediments, or within the gastrointestinal tracts of animals, where oxygen levels are low. ↵↵Understanding the specific roles and interactions of Finegoldia magna BVS033A4 within its ecological niches could provide insights into the dynamics of anaerobic microbial communities and their contributions to ecosystem functions. Further research may elucidate the specific metabolic pathways and interactions that enable Finegoldia magna BVS033A4 to thrive in its varied habitats, enriching our comprehension of microbial diversity and ecology." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 866773 AEDP00000000.1 Bac0004200 Veillonella atypica ACS-049-V-Sch6 "Veillonella atypica ACS-049-V-Sch6 is a gram-negative, cocci-shaped microbe that thrives in mesophilic temperatures, categorizing it as a Chemoheterotroph, and can be found in various body sites across different species, including the oral cavity, gut, and urogenital tract, and is an Obligate Anaerobe. The gram-negative characteristic indicates that the microbe's cell wall contains a thin peptidoglycan layer, making it more resistant to certain antibiotics. Its cocci shape allows it to adhere to surfaces and form biofilms, which can lead to various infections. As a mesophilic microbe, Veillonella atypica ACS-049-V-Sch6 grows best in temperatures between 20-45°C, making it well-suited for the human body's average temperature.As a Chemoheterotroph, Veillonella atypica ACS-049-V-Sch6 relies on chemical reactions to obtain energy and organic compounds for growth, rather than producing its own food through photosynthesis or other means. This microbe can be found in various body sites, including the oral cavity, where it contributes to the development of dental plaque and periodontal diseases. Its presence in the gut and urogenital tract can also lead to infections and other health issues. As an Obligate Anaerobe, Veillonella atypica ACS-049-V-Sch6 requires the absence of oxygen to grow, which makes it well-suited for environments with low oxygen levels, such as the human gut. The microbe's ability to produce acetate and propionate as byproducts of its metabolic processes has led to research into its potential role in influencing the human gut microbiome and overall health, with some studies suggesting that it may play a key role in shaping the immune system and regulating inflammation." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella atypica Negative Anaerobe 866776 AEDR00000000.1 Bac0004201 Finegoldia magna SY403409CC001050417 "Finegoldia magna SY403409CC001050417 is a Gram-positive, anaerobic coccus known to inhabit multiple environments. This microbe exhibits a spherical shape, typical of many cocci, and is part of a broader group of bacteria that thrive in oxygen-deprived conditions. Its ability to exist in diverse habitats suggests a versatile metabolic capacity, allowing it to adapt to various ecological niches.↵↵As an anaerobic organism, Finegoldia magna likely engages in fermentation or other anaerobic metabolic processes to obtain energy. This characteristic is particularly significant since it influences its interactions within microbial communities and its role in biogeochemical cycles. The presence of such bacteria in multiple habitats may contribute to the degradation of organic matter or play a role in the gut microbiome of various hosts.↵↵The adaptability seen in Finegoldia magna SY403409CC001050417 may also reflect the evolutionary pressures faced by anaerobic bacteria in fluctuating environments, highlighting the importance of anaerobes in both microbial ecology and potential biotechnological applications. Further exploration of its metabolic pathways and ecological interactions could provide deeper insights into the functional roles of this organism in its native habitats." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 866779 AFUI00000000.1 Bac0004202 Paenibacillus sp. IHB B 3084 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. IHB B 3084 867076 NZ_CP013204.1 Bac0004203 Paenibacillus sp. IHB B 3415 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. IHB B 3415 867080 JUEI00000000.1 Bac0004204 Methanomethylovorans hollandica DSM 15978 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans Methanomethylovorans hollandica 867904 NC_019977.1 Bac0004205 Escherichia coli DEC1B "Escherichia coli DEC1B is a rod-shaped, Gram-negative bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of its host organisms. As a facultative anaerobe, E. coli DEC1B can adapt its metabolic processes to utilize both aerobic and anaerobic conditions, enabling it to survive in diverse environments associated with its host.↵↵The habitat of E. coli DEC1B is host-associated, suggesting a potential role in the normal microbiota of its host and possibly contributing to various physiological processes. While the specific interactions and functions of this strain within its host are not detailed, it is well established that members of the E. coli species play crucial roles in gut health, including nutrient absorption, synthesis of vitamins, and competition against pathogenic microorganisms.↵↵Given its adaptability to different oxygen levels and its optimal growth temperature, E. coli DEC1B may exhibit behaviors that facilitate its survival and proliferation in the dynamic environments of the gastrointestinal tract. This characteristic adaptability highlights the ecological importance of E. coli strains, including DEC1B, in maintaining the balance of microbial communities within their host environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 868134 AIEW00000000.1 Bac0004206 Escherichia coli DEC2C "Escherichia coli DEC2C is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions. The optimal growth temperature for E. coli DEC2C is approximately 37.0°C, which aligns with the physiological temperature of many host organisms, suggesting a close adaptation to host-associated environments.↵↵The habitat of E. coli DEC2C is primarily associated with hosts, which may include various mammals. This association implies a potential role in the microbiota of these hosts, where it may contribute to various biological processes, including nutrient metabolism and gut health. The ability of E. coli DEC2C to thrive in fluctuating oxygen levels could provide it with a competitive advantage in the complex and variable environments found within host organisms.↵↵Understanding the traits of E. coli DEC2C may offer insights into the ecological roles of similar bacteria in host-associated ecosystems, particularly in relation to their adaptability and interactions with host physiology. Such knowledge could potentially inform studies on microbial community dynamics and the influence of gut microbiota on host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 868140 AIFB00000000.1 Bac0004207 Escherichia coli DEC2E "Escherichia coli DEC2E is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli DEC2E has an optimal growth temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting that it is well-adapted to a host-associated habitat.↵↵As a member of the Escherichia genus, DEC2E shares common characteristics with other E. coli strains, but specific strain-level traits remain to be elucidated. The facultative anaerobic metabolism of E. coli DEC2E enables it to exploit a range of environments, potentially allowing it to adapt to varying conditions within different host systems. This versatility may play a significant role in its survival and persistence in host-associated niches.↵↵The association of E. coli DEC2E with hosts implies a potential for complex interactions within the microbiome, where it may contribute to nutrient cycling or influence host health. Understanding the specific ecological roles of E. coli DEC2E within its host could provide insights into its broader biological significance in microbial communities and host interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 868142 AIFD00000000.1 Bac0004208 Treponema succinifaciens DSM 2489 "Treponema succinifaciens DSM 2489 is a unique microbe that exhibits several distinct characteristics. This microbe prefers a moderate temperature range, categorized as mesophilic, with optimal growth between 25-37°C. It is a chemotroph, meaning it derives energy from the chemical breakdown of organic and inorganic molecules, specifically succinate, its preferred energy source. The microbe produces energy through a process known as anaerobic respiration, utilizing the succinate as a substrate to generate ATP. Treponema succinifaciens DSM 2489 is a gram-negative bacterium, characterized by its thin peptidoglycan layer. Its shape is spiral or helical, a characteristic typical of the genus Treponema. The microbe is found in a variety of body sites, including the oral cavity, nasal passages, and skin, across all possible species. Oxygen is not a preferred requirement for this microbe, classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen. In fact, it is inhibited by oxygen and will not grow in aerobic environments. This anaerobic nature suggests that it has adapted to environments with low or no oxygen availability. In addition to its unique characteristics, Treponema succinifaciens DSM 2489 has been found to be involved in the breakdown of succinate, a key step in the fermentation of certain sugars. This process is important for the production of bioproducts, such as biofuels and biochemicals. Further research on this microbe has the potential to unlock new pathways for biotechnology applications." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema succinifaciens DSM 2489 Negative Yes Anaerobic Mesophilic HostAssociated Free living 869209 NC_015385.1 Bac0004209 Marinithermus hydrothermalis DSM 14884 "Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) is a strictly aerobic, heterotrophic, thermophilic, marine, Gram-negative bacterium isolated from a deep-sea hydrothermal vent chimney sample collected from the Suiyo Seamount in the Izu-Bonin Arc, Japan, at a depth of 1385 m. The cells are rod-shaped, occurring in pairs or filamentous. Growth is observed between 50.0 and 72.5 degrees Celsius with an optimum at 67.5 degrees Celsius and at pH 6.25-7.75, with an optimum at pH 7.00. M.hydrothermalis absolutely requires NaCl, at a concentration between 0.5-4.5%, with an optimum at 3.0 %. It is able of growing solely on complex organic substrates such as yeast extract, tryptone and Casamino acids, utilizing glutamate, proline, serine, cellobiose, trehalose, sucrose, acetate and pyruvate as complementary substrates. (Adapted from PMID: 12656153). (HAMAP: MARHT)" Thermotogati Deinococcota Deinococci Thermales Thermaceae Marinithermus Marinithermus hydrothermalis DSM 14884 Negative Bacilli No 1 2 Aerobic Heterotroph Thermophilic Aquatic Free living Filaments- Pairs No 869210 NC_015387.1 Bac0004210 Turneriella parva DSM 21527 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Turneriella Turneriella parva 869212 NC_018020.1 Bac0004211 Saccharicrinis fermentans DSM 9555 = JCM 21142 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Saccharicrinis Saccharicrinis fermentans 869213 BAMD00000000.1 Bac0004212 Escherichia coli 99.0741 "Escherichia coli 99.0741 is a Gram-negative, rod-shaped bacterium commonly found in pairs or as single cells, thriving optimally at 37.0°C. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. E. coli is typically associated with host organisms, suggesting its role in various host-associated ecosystems, including the gastrointestinal tract of mammals.↵↵The Gram-negative cell wall structure includes a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with the host and other microbes in its habitat. The capability to exist in both oxygen-rich and oxygen-poor conditions allows E. coli 99.0741 to adapt to diverse microenvironments within its host, facilitating its survival and potential metabolic versatility.↵↵Given its optimal growth temperature, this strain is well-suited to the warm-blooded hosts it typically inhabits, where it may engage in complex interactions with the microbiota and the immune system of the host. Such interactions could have implications for nutrient absorption and microbial balance within the host environment, highlighting the potential role of E. coli 99.0741 as a key player in maintaining microbial homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 869678 AEZR00000000.2 Bac0004213 Escherichia coli 4.0522 "Escherichia coli 4.0522 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. It is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This versatility in oxygen utilization is particularly advantageous for its survival in diverse habitats, including its primary ecological niche as a host-associated organism. ↵↵The optimal growth temperature for E. coli 4.0522 is approximately 37.0°C, which aligns with the internal body temperature of many warm-blooded hosts, suggesting a close adaptation to life within such environments. This adaptation may facilitate its role in various biological processes, including nutrient absorption and gut microbiota dynamics.↵↵Given its host-associated habitat, E. coli 4.0522 may play a significant role in the maintenance of microbial balance within the gastrointestinal tract, potentially contributing to the overall health of its host. Understanding the specific interactions and functions of this strain within its ecological niche could provide insights into host-microbe relationships and the broader implications for microbial ecology in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 869681 AEZU00000000.2 Bac0004214 Escherichia coli 9.0111 "Escherichia coli 9.0111 is a Gram-negative, rod-shaped bacterium predominantly found in pairs or as single cells, exhibiting a facultative anaerobic metabolism. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its natural habitat within host organisms. E. coli is known for its versatility in metabolic processes, allowing it to adapt to both aerobic and anaerobic environments, which is particularly advantageous in the variable conditions within the gut flora of mammals.↵↵As a host-associated microbe, E. coli 9.0111 likely plays a significant role in the microbiome, contributing to various biological processes such as nutrient absorption and the maintenance of intestinal homeostasis. The capacity to exist in pairs or as single cells may enhance its survival and adaptability within the dynamic gastrointestinal environment, facilitating interactions with other microbial species and the host's immune system. This strain exemplifies the complex relationships that can develop between host organisms and their resident microbiota, underscoring the importance of E. coli in maintaining a balanced microbial community. Understanding such traits of E. coli 9.0111 can provide insights into its ecological roles and potential implications for host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 869686 AEZZ00000000.2 Bac0004215 Escherichia coli 2.3916 "Escherichia coli 2.3916 is a Gram-negative, rod-shaped bacterium commonly found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to the warm-blooded hosts in which it typically resides. As a facultative anaerobe, E. coli 2.3916 possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to colonize various niches within its host.↵↵The habitat of E. coli 2.3916 is primarily host-associated, suggesting a close relationship with its host organisms. This association may facilitate its survival and proliferation, as it can exploit the host's nutrients while adapting to fluctuating oxygen levels. The ability to exist in diverse environments underscores the adaptability of this strain, which may play a role in the complex microbial communities found within the gastrointestinal tracts of mammals.↵↵The characteristics of E. coli 2.3916 highlight its potential role in host health and microbiome dynamics. Understanding the specific interactions and contributions of this strain to the host environment could provide insights into the broader ecological implications of E. coli within the gut microbiome and its influence on host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 869688 AFAB00000000.2 Bac0004216 Chroococcidiopsis sp. CCALA 051 Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis sp. CCALA 051 869949 PYCI00000000.1 Bac0004217 Nonlabens agnitus str. JCM 17109 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens agnitus 870484 NZ_CM009580.1 Bac0004218 Vibrio scophthalmi LMG 19158 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio scophthalmi 870967 AFWE00000000.1 Bac0004219 Bacteroides stercorirosoris Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercorirosoris 871324 FQZN00000000.1 Bac0004220 Mobiluncus mulieris ATCC 35239 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris 871571 AEET00000000.1 Bac0004221 Poseidonocella pacifica Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Poseidonocella Poseidonocella pacifica 871651 FOJU00000000.1 Bac0004222 Trichococcus sp. ES5 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Trichococcus Trichococcus sp. ES5 872292 FJND00000000.1 Bac0004223 Acidithiobacillus sp. GGI-221 Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus sp. GGI-221 872330 AEFB00000000.1 Bac0004224 Mesomycoplasma hyorhinis HUB-1 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis 872331 NC_014448.1 Bac0004225 Ardenticatena maritima str. 110S "Ardenticatena maritima str. 110S is a Gram-negative, non-spore-forming bacterium that demonstrates facultative aerobe/anaerobe metabolic capabilities, thriving optimally at a temperature of 45.0°C. This organism is notable for its ability to adapt to varying oxygen levels, which may allow it to colonize diverse environments, particularly those with fluctuating oxygen availability. ↵↵The Gram-negative nature of Ardenticatena maritima str. 110S suggests a complex outer membrane structure that may contribute to its resilience in marine environments. The absence of sporulation indicates that this strain has developed alternative survival strategies, potentially relying on metabolic versatility to endure unfavorable conditions rather than forming spores.↵↵Given its optimal growth temperature, Ardenticatena maritima str. 110S is likely adapted to moderately thermophilic environments, such as those found in hydrothermal vents or other geothermal habitats. This adaptation may reflect its ecological role in nutrient cycling within these specialized niches, particularly in the degradation of organic matter under varying oxygen conditions. As such, Ardenticatena maritima str. 110S may contribute to the microbial community dynamics in its respective ecosystem, highlighting the intricate relationships among thermophilic bacteria and their environment." Bacillati Chloroflexota Ardenticatenia Ardenticatenales Ardenticatenaceae Ardenticatena Ardenticatena maritima Gram-negative non-motile facultative aerobe/anaerobe 45 thermophilic non-spore-forming 872965 LGKN00000000.1 Bac0004226 Amphibacillus marinus "Amphibacillus marinus is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, positioning it within a resilient group of microorganisms capable of surviving harsh environmental conditions. This bacterium thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. As a facultative aerobe/anaerobe, Amphibacillus marinus can utilize oxygen for growth when available but is also capable of anaerobic metabolism, allowing it to inhabit a variety of ecological niches with differing oxygen levels.↵↵The spore-forming capacity of Amphibacillus marinus suggests adaptations that enhance its survival in fluctuating environments, potentially enabling it to endure periods of nutrient limitation or other stressors. This trait is particularly significant in marine or brackish habitats, where changes in temperature and salinity can occur.↵↵Understanding the physiological characteristics of Amphibacillus marinus may provide insights into its role in biogeochemical cycles, particularly in the breakdown of organic matter and nutrient cycling in marine ecosystems. Its ability to thrive under varying oxygen conditions may also contribute to its ecological versatility, allowing it to occupy specific niches where other microorganisms may not compete effectively." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Amphibacillus Amphibacillus marinus Gram-positive rod facultative aerobe/anaerobe 29 mesophilic spore-forming 872970 FODJ00000000.1 Bac0004227 Segatella buccae ATCC 33574 "Segatella buccae ATCC 33574 is a Gram-negative anaerobic bacterium characterized by its inability to thrive in the presence of oxygen. This microbe is notable for its unique metabolic adaptations that allow it to survive in oxygen-depleted environments, often found in the human oral cavity, where it may play a role in the complex microbial community. ↵↵As a member of the diverse group of anaerobic bacteria, Segatella buccae contributes to the intricate balance of microbial interactions within its habitat. The anaerobic nature of this organism suggests it relies on fermentation or other anaerobic metabolic processes for energy production. Understanding its ecological role can provide insights into the dynamics of oral microbiomes, including potential interactions with other microorganisms and implications for oral health. ↵↵Future studies may further elucidate the physiological characteristics and ecological significance of Segatella buccae ATCC 33574, particularly regarding its contributions to microbial homeostasis in anaerobic environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella buccae Negative Anaerobe 873513 AEPD00000000.1 Bac0004228 Capnocytophaga ochracea F0287 "Capnocytophaga ochracea F0287 is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains and singles. This microbe exhibits a microaerophilic oxygen requirement, indicating its growth is optimal in environments with lower levels of oxygen. C. ochracea F0287 is known to inhabit multiple habitats, suggesting a versatile ecological niche that may facilitate its adaptation to varying environmental conditions. ↵↵The morphological traits and oxygen dependency of C. ochracea F0287 may contribute to its ecological role in the microbiomes of diverse environments. Microaerophilic organisms often participate in anaerobic processes, which can influence nutrient cycling and microbial community dynamics. The ability of C. ochracea F0287 to thrive in different habitats could reflect its potential involvement in the decomposition of organic matter or interactions with other microbial populations. Further research may elucidate its specific ecological functions and interactions within these habitats, providing insight into its role in broader ecological systems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles 873517 AEOH00000000.1 Bac0004229 Streptococcus pseudoporcinus LQ 940-04 str. LQ940-04 "Streptococcus pseudoporcinus LQ 940-04 str. LQ940-04 is a Gram-positive, nonsporulating cocci that thrives as a microaerophilic chemoheterotroph. This organism is notably found in the intestinal microflora of animals, where it plays a role in the complex microbial ecosystem of the gut. As a microaerophile, S. pseudoporcinus LQ 940-04 requires reduced oxygen levels for optimal growth, distinguishing it from strictly aerobic or anaerobic bacteria.↵↵The presence of S. pseudoporcinus in animal intestines suggests its potential involvement in the fermentation processes occurring within this habitat, contributing to the breakdown of complex carbohydrates and the maintenance of gut health. This strain's adaptation to a microaerophilic environment highlights the significance of oxygen levels in shaping microbial community dynamics and metabolic interactions in the gut ecosystem.↵↵Overall, the traits of Streptococcus pseudoporcinus LQ 940-04 str. LQ940-04 underscore its role as a beneficial member of the gut microbiota, providing insights into its functional contributions to host health and the intricate relationships among intestinal microorganisms." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudoporcinus Positive Cocci No 1 microaerophile Chemoheterotroph Animal intestinal microflora Nonsporulating 875093 AEUY00000000.2 Bac0004230 Celeribacter baekdonensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter baekdonensis 875171 NZ_CP028477.1 Bac0004231 Mycolicibacter sinensis "Mycolicibacter sinensis is a Gram-positive, rod-shaped bacterium that exists as single cells and is classified under the aerobic category, requiring oxygen for growth. This microbe is nonsporulating, indicating that it does not form spores as a means of survival under adverse conditions. M. sinensis is primarily host-associated, suggesting a close relationship with a specific biological host, which may influence its ecological niche and interactions within the host environment.↵↵The aerobic nature of M. sinensis implies that it plays a role in oxidative metabolic processes, potentially utilizing oxygen for respiration. Its Gram-positive characteristic is indicative of a thick peptidoglycan layer in the cell wall, which may provide structural integrity and contribute to its resilience in host-associated habitats. ↵↵Understanding the specific interactions of M. sinensis with its host could provide insights into its role in the host's microbiome or its potential contributions to microbial diversity. Given its unique traits, further investigation into M. sinensis may reveal its functional significance in maintaining the health of specific ecosystems, particularly those where it is associated with host organisms. This could lead to a better understanding of the balance within microbial communities and the potential implications for host physiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter sinensis Positive Rod No 1 1 Aerobic Mesophilic HostAssociated Free living Singles Nonsporulating 875328 LZIN00000000.1 Bac0004232 Photobacterium sanguinicancri Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium sanguinicancri 875932 NOIF00000000.1 Bac0004233 Cupriavidus sp. USMAA2-4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. USMAA2-4 876364 NZ_CP017750.1 Bac0004234 Tepidiphilus thermophilus Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilaceae Tepidiphilus Tepidiphilus thermophilus 876478 CYHH00000000.1 Bac0004235 Pseudohoeflea suaedae str. YC6898 "Pseudohoeflea suaedae strain YC6898 is a Gram-negative, rod-shaped bacterium that is strictly aerobic and exhibits optimal growth at 32.0°C. Characterized by its non-spore-forming nature, this microbe's morphological and physiological traits suggest a specialized adaptation to its environmental niche.↵↵As a Gram-negative organism, P. suaedae str. YC6898 possesses a double membrane structure, which may contribute to its resilience in competitive microbial environments. The rod shape is common among many bacteria and may facilitate motility and nutrient acquisition, although specific motility mechanisms for this strain have not been detailed. ↵↵The requirement for aerobic conditions indicates that P. suaedae str. YC6898 relies on oxygen for respiration, which may influence its ecological role, particularly in oxygen-rich habitats. The optimal temperature of 32.0°C suggests that this bacterium is well-suited to environments that do not experience extreme temperature fluctuations, potentially aligning with mesophilic ecosystems.↵↵In summary, the physiological attributes of Pseudohoeflea suaedae str. YC6898 reflect its adaptation to specific environmental conditions, which may include saline or brackish habitats given its association with the genus. Understanding the ecological dynamics of this bacterium could provide insights into its interactions within microbial communities and its potential roles in biogeochemical cycles." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Pseudohoeflea Pseudohoeflea suaedae Gram-negative rod motile aerobic 32 mesophilic non-spore-forming 877384 SMSI00000000.1 Bac0004236 Lachnospiraceae bacterium NK3A20 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium NK3A20 877406 FNQX00000000.1 Bac0004237 Methanobacterium lacus str. AL-21 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium lacus No 1 1 Lithotroph - Lithotroph Mesophilic HostAssociated Free living 877455 NC_015216.1 Bac0004238 Shinella sp. HZN7 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Shinella Shinella sp. HZN7 879274 NZ_CP015745.1 Bac0004239 Lactobacillus iners LactinV 03V1-b "Lactobacillus iners LactinV 03V1-b is a Gram-positive, rod-shaped bacterium classified within the genus Lactobacillus. This microbe exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions, which is characteristic of many members of the Lactobacillus genus. ↵↵As a member of the Lactobacillus genus, L. iners LactinV 03V1-b is likely involved in the fermentation of carbohydrates, a process that can produce lactic acid as a primary metabolic end product. This trait is significant as lactic acid production contributes to the maintenance of an acidic environment, which can inhibit the growth of pathogenic microorganisms and support the health of the host's microbiota.↵↵Furthermore, the facultative anaerobic nature of L. iners LactinV 03V1-b suggests its adaptability to diverse ecological niches, including those with fluctuating oxygen levels, such as in the human gastrointestinal tract or in fermented food products. The ability to survive and metabolize in both aerobic and anaerobic conditions may enhance its role in probiotic applications, where it could play a part in promoting gut health and homeostasis.↵↵Overall, L. iners LactinV 03V1-b represents a versatile bacterium with potential beneficial implications for microbiota balance, particularly in environments where oxygen availability can vary significantly." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus iners Positive Rod Facultative anaerobe 879298 AEHP00000000.1 Bac0004240 Gardnerella vaginalis 315-A "Gardnerella vaginalis 315-A is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, it derives its energy from organic compounds, which positions it as a significant microbe within host-associated habitats, particularly in the human microbiome.↵↵This strain of Gardnerella vaginalis is known to play a role in the complex microbial ecosystem of the vagina, contributing to the maintenance of its ecological balance. While some strains of Gardnerella vaginalis have been studied for their association with dysbiosis and bacterial vaginosis, the specific traits of strain 315-A suggest a specialized adaptation to its anaerobic niche.↵↵The ability of Gardnerella vaginalis 315-A to flourish in low-oxygen conditions highlights its potential role in anaerobic metabolic processes within the host. This characteristic underlines the importance of understanding microbial interactions in the vaginal microbiome, as the anaerobic conditions provide a unique environment for the survival and activity of such bacteria. Further investigation into the ecological functions and interactions of strain 315-A could unveil insights into its contributions to host health and microbial community dynamics." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 879307 AFDI00000000.1 Bac0004241 Veillonella sp. oral taxon 158 str. F0412 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. oral taxon 158 879309 AENU00000000.1 Bac0004242 Selenomonas sp. oral taxon 137 str. F0430 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 137 879310 AENV00000000.1 Bac0004243 Acetatifactor muris Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Acetatifactor Acetatifactor muris anaerobic 879566 OFSM00000000.1 Bac0004244 Cyclobacterium marinum DSM 745 This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cyclobacterium Cyclobacterium marinum DSM 745 Gram-negative sphere non-motile 29 organotroph; chemotroph Mesophilic HostAssociated Free living Poronotus triacanthus 880070 NC_015914.1 Bac0004245 Bernardetia litoralis DSM 6794 Pseudomonadati Bacteroidota Cytophagia Cytophagales Bernardetiaceae Bernardetia Bernardetia litoralis 880071 NC_018018.1 Bac0004246 Barnesiella viscericola DSM 18177 "Barnesiella viscericola DSM 18177 is a Gram-negative, rod-shaped bacterium classified as an obligate anaerobe, with a temperature preference of mesophilic conditions, and a chemoheterotrophic metabolism that utilizes organic compounds for energy production. This microbe is primarily isolated from the human gastrointestinal tract, highlighting its role in the complex microbial ecosystem of the gut. As a mesophilic organism, Barnesiella viscericola thrives optimally at moderate temperatures, which align with the internal body temperature of humans, facilitating its growth and metabolic activities in the intestines. Being a chemoheterotroph, it derives energy from organic substrates, employing various metabolic pathways to break down carbohydrates and proteins present in the gut environment. This particular metabolic versatility allows it to adapt to different dietary conditions and maintain a stable population within the microbiota. The Gram-negative nature of Barnesiella viscericola is indicative of its cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is significant as it influences the bacterium's interactions with the host immune system and other microbial residents. Barnesiella viscericola is notably associated with the human digestive tract, where it plays a crucial role in fiber fermentation and the production of short-chain fatty acids, which are beneficial for gut health. Recent studies suggest that its presence may be linked to various health benefits, including improved metabolic profiles and enhanced immune responses. Understanding the functional roles of this microbe can provide insights into the complex interactions within the gut microbiome and its implications for human health. Additionally, Barnesiella viscericola's ability to thrive in anaerobic environments underscores its importance in maintaining the balance of gut microbial communities, potentially influencing conditions such as obesity and inflammatory bowel diseases." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Barnesiella Barnesiella viscericola Gram-negative rod No 1 anaerobic Chemoheterotroph Animal intestinal microflora non-spore-forming 880074 NZ_CP007034.1 Bac0004247 Xenorhabdus khoisanae str. MCB "Xenorhabdus khoisanae str. MCB is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This organism is part of a broader group of bacteria known for their association with nematodes, which often play a role in biological control of insect pests. The aerobic nature of X. khoisanae str. MCB suggests that it requires oxygen for growth and metabolic processes, which may influence its environmental distribution and interactions with other microbial communities.↵↵The morphological characteristics, particularly its rod shape, indicate that X. khoisanae str. MCB may possess specific structural adaptations that facilitate its survival in aerobic environments. Such adaptations could include the presence of specialized respiratory systems that optimize energy production in the presence of oxygen.↵↵Xenorhabdus species are often studied for their potential applications in biocontrol and bioremediation, although the specific applications of X. khoisanae str. MCB remain to be elucidated. The ability to thrive in aerobic conditions may provide insights into its ecological roles, particularly in oxygen-rich habitats where it could interact with other microorganisms and contribute to nutrient cycling or the degradation of organic matter.↵↵Overall, the traits of X. khoisanae str. MCB underscore its potential significance within its ecological niche, particularly in relation to its interactions with nematodes and its capacity to adapt to aerobic environments. Further research may reveal more about its functional roles within microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus khoisanae Gram-negative rod aerobic 880157 LFCV00000000.1 Bac0004248 Mycoplasma leachii PG50 "Mycoplasma genus currently comprises more than 120 obligate parasitic species found in the wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most of mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. All mycoplasmas are phenotypically distinguished from other bacteria by their small size (0.3-0.8 micron in diameter) and lack of a cell wall. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. Most mycoplasmas are non-motile. Cell division proceeds via normal binary fission or via elongation of a parent cell to multinucleate filaments and subsequent breakup to coccoid bodies.M.leachii, formerly known as Mycoplasma sp. bovine group 7 of Leach (MBG7), causes arthritis and mastitis in cattle. This organism has also been isolated from small ruminants, as well as healthy cattle. It belongs to the Mycoplasma mycoides phylogenetic cluster of ruminant mycoplasmal pathogens. Strain PG50 was isolated in Australia 1963 from an arthritic joint of a calf. It can grow in pure culture. To minimize mutational heterogeneity in the genome sample, DNA was prepared from an axenic culture propagated from a single colony isolate (MU clone 8) (adapted from PMID 19502315). (EBI Integr8)" Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma leachii Positive No 1 1 Facultative Mesophilic HostAssociated Free living Bos taurus- Homo sapiens Singles Nonsporulating No 880447 NC_014751.1 Bac0004249 Methanotorris igneus Kol 5 Methanotorris igneus Kol 5. No description available. (NCBI BioProject: bp_list[1]) Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanotorris Methanotorris igneus Kol 5 Cocci Anaerobic Lithotroph - Chemolithoautotroph Hyperthermophilic Marine - Submarine Free living 880724 NC_015562.1 Bac0004250 Listeria ivanovii subsp. ivanovii PAM 55 str. PAM55 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria ivanovii 881621 NC_016011.1 Bac0004251 Saccharomonospora azurea NA-128 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora azurea 29 mesophilic 882081 NZ_CM001466.1 Bac0004252 Saccharomonospora marina XMU15 "Saccharomonospora marina XMU15 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and demonstrates optimal growth at a temperature of 29.0°C. As an aerobic organism, S. marina XMU15 requires oxygen for its metabolic processes, which is typical of many members within the Saccharomonospora genus. ↵↵The spore-forming ability of this microbe suggests a potential adaptation to survive in fluctuating environmental conditions, which may include periods of nutrient scarcity or desiccation. The Gram-positive nature indicates a robust cell wall structure, primarily composed of peptidoglycan, which can confer advantages in certain habitats, such as marine environments where osmotic pressures may vary. ↵↵The specific optimal growth temperature of 29.0°C positions S. marina XMU15 within a range suitable for many mesophilic organisms, possibly indicating its role in marine ecosystems where temperatures are typically moderate. Further investigation into the metabolic pathways and ecological interactions of S. marina XMU15 could provide insights into its potential roles in nutrient cycling or its contributions to the microbiome of marine environments. Understanding these characteristics may reveal how this bacterium interacts with its surroundings, including its potential adaptations to the unique challenges posed by its aquatic habitat." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora marina Gram-positive rod non-motile aerobic 29 mesophilic spore-forming 882083 NZ_CM001439.1 Bac0004253 Vibrio anguillarum 775 Listonella anguillarum 775 will be used for comparative analysis with other fish pathogenic bacterium. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum 13-Feb Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Oncorhynchus kisutch (Coho salmon) Singles Nonsporulating 882102 NC_015633.1 Bac0004254 Mycetohabitans rhizoxinica HKI 454 "Mycetohabitans rhizoxinica HKI 454 is a Gram-negative, ovoid-shaped bacterium that exhibits an aerobic metabolism and thrives at an optimal temperature of 32.0°C. This microbe is categorized as host-associated, suggesting a potential relationship with specific host organisms, although the nature of this association is not detailed. ↵↵The Gram-negative characteristic indicates that M. rhizoxinica possesses a distinctive cell wall structure, which may confer certain advantages in its ecological niche, such as resistance to certain antibiotics and the ability to evade host immune responses. The ovoid shape may influence its motility and interaction with host tissues, potentially facilitating its role in a host-associated environment.↵↵The optimal growth temperature of 32.0°C aligns with the thermal preferences of many mesophilic microorganisms, indicating that M. rhizoxinica may thrive in temperate environments or within host organisms that maintain this temperature range. Aerobic respiration suggests that this bacterium requires oxygen for growth, which emphasizes its potential role in aerobic environments, possibly within the oxygen-rich microhabitats of its host.↵↵In summary, Mycetohabitans rhizoxinica HKI 454's Gram-negative status, ovoid morphology, and aerobic lifestyle suggest that it may play a significant role in the microbial ecology of its host environment, potentially influencing host health and microbial community dynamics. Further studies could reveal insights into its specific interactions with host organisms and its ecological significance." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Mycetohabitans Mycetohabitans rhizoxinica Negative ovoid Yes 1 2 aerobic 32 mesophilic HostAssociated Symbiotic 882378 NC_014723.1 Bac0004255 Bifidobacterium bifidum S17 "Bifidobacterium bifidum S17 is a microorganism that exhibits the following characteristics: mesophile, chemoheterotroph, anaerobic energy production, Gram-variable, rod-shaped, found in the gastrointestinal tract of humans, obligate anaerobe. As a mesophile, Bifidobacterium bifidum S17 thrives in temperatures ranging from 25°C to 45°C, making it well-suited to inhabit the human gastrointestinal tract. Its chemoheterotrophic metabolism means that it obtains energy by breaking down organic compounds, rather than producing its own food through photosynthesis. This microbe relies on anaerobic energy production, suggesting that it is adapted to environments with low oxygen levels. Gram-variable staining indicates that Bifidobacterium bifidum S17 has an irregular or uncertain cell wall structure, which can affect its interaction with the human immune system. In terms of shape, this microbe is rod-shaped, which can facilitate its movement and competition for nutrients within the gastrointestinal tract. Its abundance in the human gastrointestinal tract, particularly in infants, plays a crucial role in the development of the gut microbiome. As an obligate anaerobe, Bifidobacterium bifidum S17 requires an environment with no oxygen present to survive and replicate. This is likely due to the presence of oxygen-sensitive enzymes and its reliance on anaerobic energy production. Moreover, Bifidobacterium bifidum S17 has been increasingly recognized for its potential health benefits, including the production of short-chain fatty acids, modulation of the immune system, and improvement of nutrient absorption in the gut. The strain S17 has been extensively studied due to its ability to produce bifidin, a polysaccharide with prebiotic properties, which can promote the growth of beneficial microorganisms in the gut. Overall, Bifidobacterium bifidum S17 is a significant component of the human microbiome, and its unique characteristics have sparked significant interest in its potential applications in human health and disease." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum S17 Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Homo sapiens Nonsporulating No 883062 NC_014616.1 Bac0004256 Actinobaculum massiliense ACS-171-V-Col2 "Actinobaculum massiliense ACS-171-V-Col2 is a Gram-positive bacillus that is classified within the diverse phylum Actinobacteria. This anaerobic microorganism has been identified as a significant inhabitant of the human urinary tract, where it plays a role in the complex microbial ecosystem of the urogenital region. Despite limited information regarding its metabolic pathways and energy sources, its presence in a specialized habitat highlights its potential adaptations to the anaerobic conditions typically found within the urinary tract. Actinobaculum massiliense has garnered attention due to its association with urinary tract infections (UTIs), particularly in patients with underlying health issues. The bacterium's resilience in anaerobic environments suggests it may utilize metabolic strategies distinct from aerobic organisms, allowing it to thrive in low-oxygen niches. Its discovery enhances our understanding of the microbial diversity present in urogenital health and disease, emphasizing the importance of recognizing less common pathogens in clinical settings. Ecologically, Actinobaculum massiliense exemplifies the intricate interdependencies of the human microbiota, where even minor constituents like this bacillus can influence health outcomes. This highlights the necessity for comprehensive microbial assessments in diagnosing and treating infections, as well as the potential for discovering yet-undocumented microbial species that contribute to human health and disease. Understanding its role within the microbiome could lead to innovative approaches in managing UTIs and other related conditions." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum massiliense Positive Rod non-motile Anaerobic 37 mesophilic Human urinary tract non-spore-forming 883066 AGWL00000000.1 Bac0004257 Actinotignum schaalii FB123-CNA-2 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinotignum Actinotignum schaalii 883067 AGWM00000000.1 Bac0004258 Schaalia turicensis ACS-279-V-Col4 "Schaalia turicensis ACS-279-V-Col4 is a Gram-positive, facultative anaerobic bacterium. This organism demonstrates versatility in its metabolic capabilities, allowing it to thrive in both aerobic and anaerobic environments. The Gram-positive nature of S. turicensis is indicative of a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria and may provide insights into its structural resilience and potential survival strategies in variable ecological niches.↵↵As a facultative anaerobe, S. turicensis can utilize oxygen when available but also possesses the metabolic flexibility to switch to anaerobic pathways in the absence of oxygen. This adaptability may suggest that S. turicensis is well-suited to environments where oxygen levels fluctuate, potentially allowing it to occupy a range of ecological niches where competing organisms may be limited by oxygen availability.↵↵Understanding the metabolic adaptations of S. turicensis could provide insights into its role in various biogeochemical cycles, particularly in environments subject to oxygen depletion. This capability may position S. turicensis as a significant player in microbial communities, particularly in the degradation of organic matter or in the cycling of nutrients in anaerobic habitats. Further studies may elucidate the specific ecological roles and interactions of S. turicensis within its habitat, contributing to our overall understanding of microbial diversity and function." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia turicensis Positive Facultative anaerobe 883077 AGWQ00000000.1 Bac0004259 Afipia clevelandensis ATCC 49720 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia clevelandensis 883079 AGWY00000000.1 Bac0004260 Alloiococcus otitis ATCC 51267 "Alloiococcus otitis ATCC 51267 is a Gram-positive, ovoid-shaped bacterium that exhibits aerobic to microaerophilic growth characteristics. This organism is notable for its non-spore-forming nature, which suggests a reliance on favorable environmental conditions for survival and proliferation. The Gram-positive cell wall structure, typical of this group, may contribute to its stability and resilience under specific conditions, although it is not equipped with the sporulation mechanism that many other bacteria possess.↵↵The growth requirements of A. otitis indicate that it thrives in environments with limited oxygen availability, which could be indicative of its ecological niche, possibly within the human auditory system or similar habitats where microaerophilic conditions may prevail. Understanding the precise environmental conditions that support the growth and maintenance of A. otitis could provide insights into its ecological role and its interactions with other microbial communities. Additionally, the absence of sporulation suggests that this species may be adapted to specific environments rather than exhibiting broad resilience to extreme conditions. Such traits may influence its potential interactions with host organisms and its overall biological significance in its habitat." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alloiococcus Alloiococcus otitis Gram-positive ovoid aerobic / microaerophile non-spore-forming 883081 AGXA00000000.1 Bac0004261 Lactobacillus crispatus FB077-07 "Lactobacillus crispatus FB077-07 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This microbe is host-associated, suggesting it thrives in specific environments associated with living hosts, which may include various niches within the gastrointestinal tract or urogenital tract of mammals. ↵↵The facultative anaerobic nature of L. crispatus FB077-07 indicates its ability to grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its host. This adaptability may contribute to its role in maintaining a balanced microbiota, potentially influencing host health and physiology. ↵↵Notably, Lactobacillus species, including L. crispatus, are commonly recognized for their beneficial effects, such as enhancing the local immune response and inhibiting the growth of pathogenic microorganisms. The chain arrangement of cells may facilitate communication and metabolic cooperation between individual bacteria, which could enhance their overall resilience in dynamic host environments. ↵↵Thus, the ecological role of Lactobacillus crispatus FB077-07 may extend beyond mere colonization, possibly involving complex interactions within microbial communities that support host health and contribute to the stability of the microbiome. Further investigation into the specific metabolic pathways and interactions of this strain could provide valuable insights into its functional significance in host-associated ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains 883092 AGZG00000000.1 Bac0004262 Dolosigranulum pigrum ATCC 51524 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Dolosigranulum Dolosigranulum pigrum 883103 AGEF00000000.1 Bac0004263 Eubacterium infirmum F0142 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Eubacterium [Eubacterium] infirmum anaerobic 883109 AGWI00000000.1 Bac0004264 Falseniella ignava CCUG 37419 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Falseniella Falseniella ignava 883112 AGZE00000000.1 Bac0004265 Massilia timonae CCUG 45783 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia timonae aerobic 883126 AGZI00000000.1 Bac0004266 Myroides odoratimimus CCUG 10230 "Myroides odoratimimus CCUG 10230 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and demonstrates aerotolerant characteristics. This organism thrives optimally at a temperature of 37.0°C, suggesting a potential affinity for mammalian-associated environments, although it is capable of surviving in diverse habitats. The ability to utilize various organic compounds as energy sources aligns with its classification as a chemoheterotroph, indicating a metabolic versatility that may facilitate its survival in fluctuating ecological niches. ↵↵The aerotolerant nature of Myroides odoratimimus allows it to endure in environments with varying oxygen levels, further enhancing its adaptability. This trait may enable it to occupy a range of ecological niches, from soil to aquatic environments, where oxygen availability can change.↵↵Given these characteristics, Myroides odoratimimus CCUG 10230 may play a role in the decomposition of organic matter in its natural habitats, contributing to nutrient cycling and ecosystem dynamics. Its metabolic capabilities underscore the importance of such microorganisms in maintaining ecological balance and suggest potential utility in biotechnology applications, particularly in bioremediation or waste treatment processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus Negative Rod No 1 Aerotolerant 37 Chemoheterotroph Mesophilic Multiple 883150 AGEC00000000.2 Bac0004267 Myroides odoratimimus CIP 101113 "Myroides odoratimimus CIP 101113 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is aerotolerant, allowing it to thrive in varying oxygen conditions. This organism has an optimal growth temperature of 37.0°C, suggesting a preference for mesophilic environments, which aligns with its ability to inhabit multiple habitats. ↵↵The capacity to utilize a range of organic compounds as energy sources indicates a versatile metabolic profile, which may enhance its adaptability to diverse ecological niches. While specific ecological interactions of Myroides odoratimimus are not detailed, the presence of such a microbe in various environments implies a potential role in organic matter decomposition and nutrient cycling. This adaptability may also suggest its involvement in microbial communities where it contributes to metabolic processes in both aerobic and anaerobic conditions, depending on the availability of oxygen.↵↵Overall, Myroides odoratimimus CIP 101113 exemplifies a resilient microbial entity capable of thriving across different environments, underscoring the ecological significance of such bacteria in maintaining ecosystem functions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus Negative Rod No 1 Aerotolerant 37 Chemoheterotroph Mesophilic Multiple 883154 AGEE00000000.1 Bac0004268 Veillonella seminalis ACS-216-V-Col6b "Veillonella seminalis ACS-216-V-Col6b is a Gram-negative, obligate anaerobic bacterium. As a member of the genus Veillonella, this microbe is characterized by its inability to survive in the presence of oxygen, indicating its adaptation to strictly anaerobic environments. ↵↵Veillonella species are typically found in various anaerobic niches, including the human oral cavity and gastrointestinal tract, where they play a role in the fermentation of organic material. This strain, ACS-216-V-Col6b, likely contributes to the complex microbial community dynamics in these environments, participating in the breakdown of metabolites produced by other anaerobes.↵↵The Gram-negative nature of V. seminalis ACS-216-V-Col6b suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interactions with host tissues and other microbial species. Furthermore, its obligate anaerobic requirement suggests that it may be involved in specific metabolic processes that require reduced oxygen conditions, potentially influencing the overall redox state of its habitat.↵↵In summary, Veillonella seminalis ACS-216-V-Col6b exemplifies the ecological role of anaerobic bacteria in nutrient cycling and microbial interactions within low-oxygen environments. Its presence underscores the significance of anaerobes in maintaining homeostasis in microbial ecosystems, with implications for understanding microbial community structure and function in human health and disease." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella seminalis Negative Obligate anaerobe 883156 AHAF00000000.1 Bac0004269 Prevotella micans F0438 "Prevotella micans F0438 is a Gram-negative, anaerobic bacterium that belongs to the genus Prevotella, which is known for its role in human microbiota. This microbe thrives in environments devoid of oxygen, suggesting a metabolic adaptation to anaerobic conditions where it likely participates in complex biochemical interactions. The Gram-negative nature of P. micans F0438 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that can influence its susceptibility to certain antibiotics and its interactions with the host immune system.↵↵Prevotella species, including P. micans F0438, are commonly found in various body sites, particularly in the oral cavity and gastrointestinal tract, where they may play a role in the fermentation of carbohydrates and the metabolism of proteins. The specific ecological niches occupied by P. micans F0438 could be explored further to understand its potential contributions to the microbiome's overall function and health. ↵↵Notably, the anaerobic requirement of P. micans F0438 highlights its adaptation to environments where oxygen is limited, such as within biofilms or deep tissue pockets, and underscores the importance of studying such microbes in the context of microbial community dynamics and their interactions with other microorganisms. Understanding the functional roles of anaerobic bacteria like Prevotella micans F0438 can provide insights into their contributions to both health and disease states in various ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella micans Gram-negative non-motile anaerobic 883158 AGWK00000000.1 Bac0004270 Campylobacter ureolyticus ACS-301-V-Sch3b Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus 883165 AGYD00000000.1 Bac0004271 Corynebacterium otitidis ATCC 51513 "Corynebacterium otitidis ATCC 51513 is a Gram-positive, non-spore-forming bacterium that exhibits microaerophilic growth, thriving optimally at a temperature of 37.0°C. This bacterium belongs to the genus Corynebacterium, which is known for its rod-shaped morphology and characteristic cell wall structure. The microaerophilic requirement indicates that C. otitidis prefers environments with reduced oxygen levels, which may influence its habitat and interactions within microbial communities.↵↵In laboratory settings, the growth characteristics of C. otitidis suggest an adaptation to specific niches where oxygen concentration is lower than atmospheric levels, potentially reflecting its ecological role in environments such as the human respiratory tract or other mucosal surfaces. The optimal growth temperature of 37.0°C aligns with the physiological temperature of warm-blooded hosts, hinting at a possible association with mammalian hosts.↵↵Further investigation into the ecological role of C. otitidis could reveal its interactions with other microorganisms in microaerobic environments, contributing to our understanding of microbial dynamics in such ecosystems. This could also enhance insights into its potential roles in health and disease, particularly in relation to the normal microbiota and its responses to environmental changes." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium otitidis Gram-positive non-motile microaerophile 37 mesophilic non-spore-forming 883169 AHAE00000000.1 Bac0004272 Schleiferia thermophila str. DSM 21410 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Schleiferiaceae Schleiferia Schleiferia thermophila 884107 QPJS00000000.1 Bac0004273 Meiothermus hypogaeus str. DSM 23238 "Meiothermus hypogaeus str. DSM 23238 is a Gram-negative, aerobic, rod-shaped bacterium that thrives at an optimal growth temperature of 45.0 °C. This organism does not form spores, which suggests a reliance on stable environmental conditions for survival. ↵↵The rod shape of Meiothermus hypogaeus aligns with typical morphologies observed in thermophilic bacteria, which are often adapted to high-temperature environments. Its aerobic nature indicates that it requires oxygen for growth, emphasizing its potential role in processes that require aerobic respiration. The optimal temperature of 45.0 °C suggests that this bacterium is well-suited for thermophilic niches, such as those found in geothermal environments or hot springs, where temperatures can elevate significantly.↵↵The absence of sporulation in Meiothermus hypogaeus may indicate a vulnerability to fluctuating environmental conditions compared to spore-forming bacteria, which can withstand extreme stressors. However, this trait also points to potential metabolic capabilities that allow the organism to thrive in its preferred habitat without the need for sporulation as a survival strategy.↵↵Understanding the specific adaptations of Meiothermus hypogaeus str. DSM 23238 to its thermal and aerobic conditions could provide insights into its metabolic pathways and possible applications in biotechnology, particularly in thermophilic processes." Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus hypogaeus Gram-negative rod non-motile aerobic 45 thermophilic non-spore-forming 884155 QWKY00000000.1 Bac0004274 Burkholderia pseudomallei 1026b "Burkholderia pseudomallei 1026b is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolism. This strain is a member of the Burkholderia genus, which is known for its diverse ecological niches and ability to survive in various environmental conditions. B. pseudomallei 1026b, like other strains of this species, is adapted to aerobic conditions, indicating its reliance on oxygen for growth and energy production.↵↵The terrestrial habitat of B. pseudomallei 1026b suggests that it may play a role in soil microbiomes, potentially interacting with other microorganisms and contributing to nutrient cycling. Its ability to persist in soil environments may also facilitate its survival during periods of variable moisture and nutrient availability, which are characteristic of many terrestrial ecosystems. The ecological implications of this strain’s aerobic lifestyle and terrestrial habitat could extend to its interactions with plants and animals, although such interactions require further investigation to elucidate their significance.↵↵Overall, the characteristics of Burkholderia pseudomallei 1026b highlight its adaptability to aerobic environments and underscore the potential ecological roles it may fulfill within terrestrial ecosystems, warranting further studies into its environmental interactions and contributions to microbial community dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 884204 NC_017831.1 Bac0004275 Mageeibacillus indolicus str. KA00405 "Mageeibacillus indolicus strain KA00405 is a rod-shaped bacterium that has been characterized as host-associated. This morphological trait suggests that it may inhabit or rely on a specific host environment for its survival and growth. The association with a host indicates a potential symbiotic relationship, which can provide insights into its ecological role.↵↵While the precise biological functions and interactions of Mageeibacillus indolicus str. KA00405 are not fully elucidated, its rod shape may influence its motility and colonization capabilities within the host. Rod-shaped bacteria are often adept at navigating complex environments, which can enhance their ability to establish and maintain their presence in host-associated niches.↵↵The host-associated nature of this microbe implies that it may play a significant role in the microbiome of its host, potentially contributing to various metabolic processes or influencing the host’s immune response. Understanding the specific interactions and functions of Mageeibacillus indolicus str. KA00405 within its host could provide valuable insights into the dynamics of microbial communities and their impact on host health. Further research into this bacterium may illuminate its potential benefits or roles in host physiology, underscoring the importance of host-associated microbes in broader ecological contexts." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Mageeibacillus Mageeibacillus indolicus Rod No 1 1 HostAssociated 884684 NBZD00000000.1 Bac0004276 Jonquetella anthropi DSM 22815 "Currently, very little is known about the microbe 'Jonquetella anthropi DSM 22815'. Further research is needed to understand its morphology, metabolism, and ecology." Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Jonquetella Jonquetella anthropi No 1 885272 NZ_CM001376.1 Bac0004277 Chryseobacterium sp. BLS98 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. BLS98 885586 LFNF00000000.1 Bac0004278 Singulisphaera acidiphila DSM 18658 "Singulisphaera acidiphila DSM 18658 is a spherical, chemotrophic organotroph that thrives optimally at a temperature of 25.0 °C. This microbe is characterized by its distinct spherical morphology, which is a key trait that may influence its interactions within various environments. As an organotroph, S. acidiphila utilizes organic compounds as its primary energy source, allowing it to play a potential role in nutrient cycling, particularly in environments rich in organic matter.↵↵The optimal growth temperature of 25.0 °C suggests that S. acidiphila is well-adapted to moderate, temperate conditions, which may be indicative of its natural habitat. This temperature preference aligns with a variety of ecosystems where organic substrates are prevalent, enabling S. acidiphila to contribute to the decomposition processes and the transformation of organic materials into simpler compounds.↵↵In terms of ecological significance, the ability of S. acidiphila to act as an organotrophic chemotroph positions it as a potential participant in biogeochemical cycles, particularly in acidic environments where organic matter is abundant. This may facilitate the breakdown of complex organic substances, thereby enhancing nutrient availability for other microorganisms. The unique combination of its spherical shape, temperature preference, and metabolic capabilities underscores the importance of S. acidiphila in microbial communities, particularly in environments undergoing organic matter degradation." Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila sphere non-motile 25 organotroph; chemotroph mesophilic 886293 NC_019893.1 Bac0004279 Plasticicumulans acidivorans str. DSM 23606 Pseudomonadati Pseudomonadota Gammaproteobacteria Competibacterales Candidatus Competibacteraceae Plasticicumulans Plasticicumulans acidivorans 886464 QGTJ00000000.1 Bac0004280 Hylemonella gracilis ATCC 19624 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hylemonella Hylemonella gracilis 887062 AEGR00000000.1 Bac0004281 Rhizobium taibaishanense str. 14971 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Gillisella Gillisella taibaishanensis 887144 MKIN00000000.1 Bac0004282 Actinobacillus ureae ATCC 25976 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus ureae microaerophile 887324 AEVG00000000.1 Bac0004283 Mobiluncus curtisii ATCC 51333 "Mobiluncus curtisii ATCC 51333 is a Gram-positive, rod-shaped bacterium that is classified as an anaerobe, thriving in environments devoid of oxygen. This microbe is predominantly host-associated, indicating its presence in specific biological contexts, likely within the gastrointestinal or genitourinary tracts of mammals. ↵↵As an anaerobic organism, M. curtisii relies on fermentation processes for energy production, adapting to the anaerobic niches found in host environments. The rod shape of this bacterium may contribute to its motility and ability to colonize host tissues, although the specific mechanisms of colonization and interaction with host systems are not detailed in the current data.↵↵The presence of M. curtisii in host-associated habitats suggests a potential role in the microbial ecology of the host, possibly contributing to the maintenance of a balanced microbiota or influencing host metabolic processes. Further exploration of its interactions with other microbial species and host tissues could provide insights into its ecological role and the dynamics of the microbial communities in which it resides. Understanding the function of M. curtisii within these environments may also shed light on the broader implications of anaerobic bacteria in health and disease states." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii Positive Rod Anaerobe Mesophilic HostAssociated Free living 887326 AEPY00000000.1 Bac0004284 Kingella kingae ATCC 23330 "Kingella kingae ATCC 23330 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism and derives energy as a chemoheterotroph. This organism thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to a host-associated environment. K. kingae is known to inhabit multiple ecological niches, reflecting its versatile lifestyle and potential interactions within diverse microbial communities.↵↵As a facultative anaerobe, K. kingae can grow in both aerobic and anaerobic conditions, allowing it to exploit various habitats where oxygen availability may fluctuate. This adaptability may contribute to its persistence in different environments, including those within the human body as well as in other ecological settings. Understanding the metabolic capabilities and ecological adaptability of Kingella kingae ATCC 23330 can provide insights into its role in microbial ecosystems and its potential interactions with other microorganisms. Further research could elucidate the specific conditions that favor its growth and the implications for its ecological contributions." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella kingae Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Multiple Nonsporulating 887327 AFHS00000000.1 Bac0004285 Lautropia mirabilis ATCC 51599 "Lautropia mirabilis ATCC 51599 is a Gram-negative, rod-shaped bacterium that thrives in mesophilic conditions, displaying a temperature preference for moderate environments. This microbe is classified as a heterotroph, relying on organic compounds for growth and energy. It is typically found in human-associated environments, notably in the oral cavity and respiratory tract, indicating its association with various body sites. As a Gram-negative organism, Lautropia mirabilis possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can contribute to its virulence and immunogenic properties. Its rod-shaped morphology allows for motility and adaptation to diverse microenvironments, aiding in its survival within the complex oral microbiome. The mesophilic nature of this bacterium signifies its optimal growth between 20-45°C, aligning with the temperature of the human body, making it well-suited for colonization in various human niches. Lautropia mirabilis is classified as a facultative anaerobe, meaning it can grow in the presence or absence of oxygen. This flexibility is advantageous in the dynamic and often oxygen-limiting environments of the human oral cavity and respiratory tract. Its heterotrophic lifestyle allows it to utilize a range of organic substrates, contributing to its role in the oral microbiome and potentially influencing oral health and disease states. Lautropia mirabilis has garnered interest in clinical microbiology due to its association with periodontal diseases and respiratory infections, suggesting a potential role in both health and disease. Its identification and study have implications for understanding microbial dynamics and interactions within the human body, contributing to the broader knowledge of human-associated microbiota." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Lautropia Lautropia mirabilis Negative Facultative anaerobe 887898 AEQP00000000.1 Bac0004286 Porphyromonas catoniae ATCC 51270 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas catoniae anaerobic 887901 JDFF00000000.1 Bac0004287 Lactobacillus delbrueckii subsp. lactis DSM 20072 "Lactobacillus delbrueckii subsp. lactis DSM 20072 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This subspecies is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may contribute to its versatility in various habitats. Optimal growth occurs at a temperature of 42.0°C, suggesting an adaptation to warmer conditions that could be characteristic of specific niches where this microbe is found.↵↵Lactobacillus delbrueckii subsp. lactis DSM 20072 is known for its probiotic properties and is often utilized in the dairy industry for the fermentation of milk products, particularly in the production of yogurt and cheese, where it plays a crucial role in flavor development and preservation. The capability to grow in chains may enhance its metabolic efficiency in fermentation processes, as this arrangement can facilitate interactions among cells.↵↵The adaptability of this subspecies to multiple habitats underscores its ecological significance, particularly in environments where temperature fluctuations may occur, such as in food production systems. This adaptability not only reflects its potential for industrial applications but also suggests a role in maintaining microbial balance in diverse ecosystems influenced by temperature and oxygen availability." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 888027 AEXU00000000.1 Bac0004288 Streptococcus parasanguinis ATCC 903 "Streptococcus parasanguinis ATCC 903 is a Gram-positive, coccoid-shaped bacterium that thrives at mesophilic temperatures, primarily categorized as a heterotroph. This microorganism is widely distributed in human oral and respiratory tracts, where it forms part of the normal microbial flora. Being classified as a facultative anaerobe, S. parasanguinis can adapt to both aerobic and anaerobic environments, allowing it to colonize a variety of niches within the human body, including the mouth, throat, and even the gastrointestinal tract. The Gram-positive nature of S. parasanguinis signifies a thick peptidoglycan layer in its cell wall, which provides structural support and helps the bacteria maintain its shape. Its coccoid form enables S. parasanguinis to form chains or clusters, facilitating its interaction with other microorganisms and host tissues. As a mesophilic organism, it prefers moderate temperature ranges, typically found within the human body, which supports its growth and metabolic activities. Characteristically, S. parasanguinis is a heterotrophic microbe, obtaining energy from organic compounds. This ability is crucial for its survival in nutrient-rich environments such as the oral cavity, where it metabolizes carbohydrates and other organic matter. Its facultative anaerobic metabolism allows S. parasanguinis to thrive in various oxygen conditions, making it resilient in fluctuating environments. Beyond its ecological role, S. parasanguinis has been studied for its potential involvement in dental plaque formation and its interactions with other oral bacteria. Its ability to produce biofilm can contribute to the development of cariogenic and periodontal diseases, underscoring its significance in oral health research." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 888048 AEVE00000000.1 Bac0004289 Streptococcus oralis ATCC 49296 "Streptococcus oralis ATCC 49296 is a Gram-positive cocci that typically arranges itself in pairs and chains. As a facultative anaerobe, this bacterium can thrive in both aerobic and anaerobic environments, which is indicative of its adaptability to various host-associated habitats. Streptococcus oralis is primarily found in the human oral cavity, where it plays a role in the complex microbiota that resides in this niche. ↵↵The ability of S. oralis to grow in the presence and absence of oxygen suggests that it may contribute to both healthy and compromised states of the oral microbiome. Given its host-associated habitat, this species may interact with other microbial inhabitants, influencing oral health and potentially participating in ecological dynamics such as biofilm formation on dental surfaces. The presence of S. oralis in the oral cavity underscores its relevance in studies of microbial communities and their implications for dental health, as well as its potential role in maintaining the balance of the oral microbiome. Understanding the characteristics of S. oralis ATCC 49296 may provide insights into the broader functions of oral streptococci and their interactions within host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 888049 AEPO00000000.1 Bac0004290 Actinomyces sp. oral taxon 180 str. F0310 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 180 888052 AEPP00000000.1 Bac0004291 Bacteroidetes bacterium oral taxon 272 str. F0290 Pseudomonadati Bacteroidota Bacteroidetes bacterium oral taxon 272 888054 AUTU00000000.1 Bac0004292 Actinomyces sp. oral taxon 448 str. F0400 "Actinomyces sp. oral taxon 448 str. F0400 is a filamentous, nonsporulating bacterium that belongs to the Actinomyces genus. This organism is classified as a mesophilic, chemoheterotroph, indicating that it thrives in moderate temperature ranges and relies on organic compounds as its primary energy source. Typically, members of the Actinomyces genus are found in various environments, and this particular strain is notably associated with the gut microbiota of hosts, contributing to oral and overall health. As part of the human microbiome, Actinomyces sp. oral taxon 448 plays a critical role in the fermentation process, breaking down complex carbohydrates and producing short-chain fatty acids, which can be beneficial for gut health. The presence of these bacteria may aid in the maintenance of a balanced microbial community, preventing dysbiosis that can lead to various oral and systemic diseases. Interestingly, the filamentous structure of Actinomyces sp. oral taxon 448 may facilitate its interaction with other microbial species in the gut environment, promoting symbiotic relationships. This morphology allows the bacteria to form extensive networks that can enhance nutrient acquisition and resist environmental challenges. Such traits not only underscore the ecological significance of Actinomyces sp. oral taxon 448 within the host gut but also highlight its potential contributions to metabolic processes and health outcomes, making it an important candidate for further investigation in microbiome studies." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 448 No 1 Chemoheterotroph Mesophilic Host Gut Filaments Nonsporulating 888056 AFQC00000000.1 Bac0004293 Aggregatibacter segnis ATCC 33393 "Aggregatibacter segnis ATCC 33393 is a notable bacterium categorized within the genus Aggregatibacter, which is part of the family Pasteurellaceae. This species is recognized as a chemoheterotroph, deriving its energy and carbon from organic compounds. This metabolic pathway is significant as it indicates A. segnis's role in various ecological niches where organic matter is abundant. Originally isolated from human sources, A. segnis is often associated with periodontal diseases, suggesting its potential pathogenicity in dental environments. As an opportunistic pathogen, it can contribute to oral biofilm formation, leading to conditions such as gingivitis and periodontitis. Understanding its metabolic capabilities helps elucidate its survival strategies in competitive microbial communities within the oral cavity. The bacterium thrives under specific anaerobic or microaerophilic conditions, which reflects its adaptability to diverse environments within the human body, especially in subgingival areas where oxygen levels are typically low. Through the production of enzymes and metabolic byproducts, A. segnis can influence the local microbiome, potentially altering the health of surrounding tissues. An intriguing insight into Aggregatibacter segnis is its dual role in both normal and pathological flora. While it can function as part of the healthy oral microbiome, its overgrowth or dysbiosis may lead to inflammatory diseases, highlighting the delicate balance that microbial populations maintain. This dual nature underscores the importance of studying such microbes to develop targeted therapies and preventative measures in dental health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter segnis Negative No 1 Chemoheterotroph 888057 AEPS00000000.1 Bac0004294 Capnocytophaga sp. oral taxon 338 str. F0234 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 338 888059 AEXX00000000.1 Bac0004295 Desulfomicrobium orale DSM 12838 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium orale anaerobic 888061 NZ_CP014230.1 Bac0004296 Enterobacter hormaechei ATCC 49162 "Enterobacter hormaechei ATCC 49162 is a Gram-negative bacterium classified within the Enterobacter genus, characterized as a facultative anaerobe that can thrive in host-associated environments. This microbe is known to exhibit metabolic versatility, enabling it to grow in both aerobic and anaerobic conditions. Its presence in host-associated habitats suggests a potential role in the microbiota of various organisms, although specific interactions and ecological functions remain to be fully elucidated.↵↵Due to its facultative anaerobic nature, Enterobacter hormaechei ATCC 49162 can adapt to fluctuating oxygen levels within its environment, which may enhance its survival in diverse ecological niches. This adaptability may contribute to its ability to colonize and persist in different host systems, potentially influencing host health and microbial community dynamics. Further investigation into this strain could provide insights into its metabolic pathways and its interactions within the host microbiome, as well as its ecological significance in the context of host-associated microbial communities. Overall, Enterobacter hormaechei ATCC 49162 exemplifies the complexity of microbial life associated with hosts and the adaptive strategies employed by Gram-negative bacteria in variable environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 888063 AFHR00000000.1 Bac0004297 Enterococcus italicus DSM 15952 "Enterococcus italicus DSM 15952 is a Gram-positive cocci bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0°C. This non-spore-forming microbe is part of the Enterococcus genus, known for its resilience and adaptability in various environments. ↵↵As a member of the lactic acid bacteria group, Enterococcus italicus is notable for its metabolic capabilities, which may include the fermentation of carbohydrates, although specific metabolic traits were not provided. The bacterium's Gram-positive nature suggests a robust cell wall structure, characterized by a thick peptidoglycan layer that contributes to its stability in diverse conditions.↵↵Enterococcus species, including E. italicus, are often found in human and animal intestines, as well as in various environmental niches. The ability to survive in aerobic environments may confer advantages in competing with other microbial populations, potentially influencing community dynamics in gut microbiomes or other habitats. ↵↵Overall, Enterococcus italicus DSM 15952 exemplifies the ecological versatility of the Enterococcus genus, highlighting its potential role in nutrient cycling within its habitat. Further studies may elucidate its interactions with other microorganisms and its contributions to ecosystem functioning, particularly in aerobic environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus italicus Gram-positive Cocci non-motile aerobic 37 mesophilic non-spore-forming 888064 AEPV00000000.1 Bac0004298 Enterococcus casseliflavus ATCC 12755 "Enterococcus casseliflavus ATCC 12755 is a Gram-positive, cocci-shaped bacterium that thrives optimally at mesophilic temperatures, making it a facultative anaerobe and a chemoheterotroph. This versatile microbe is commonly found in a variety of body sites across numerous species, including the gastrointestinal tracts of humans and animals, as well as in environmental settings such as soil and water.As a Gram-positive organism, E. casseliflavus retains the crystal violet stain used in the Gram-staining technique, resulting in a purple appearance under the microscope. This characteristic is indicative of a thick peptidoglycan layer in its cell wall. The cocci shape contributes to its ability to form clusters, which can be identified in laboratory cultures. Being mesophilic, it prefers moderate temperature ranges typically found in warm-blooded hosts. E. casseliflavus is a facultative anaerobe, enabling it to survive and grow in both aerobic and anaerobic environments. This adaptability is a significant aspect of its survival strategy, allowing it to colonize diverse habitats, including the intestinal tract where it can flourish alongside other gut microbiota. As a chemoheterotroph, it relies on organic compounds for energy and carbon, utilizing nutrients derived from its environment or its host. This microbe has gained attention not only for its ecological role but also for its clinical significance. While E. casseliflavus is generally considered a commensal organism, it can also act as an opportunistic pathogen, particularly in immunocompromised individuals. Notably, this strain is recognized for its ability to exhibit resistance to certain antibiotics, including vancomycin, making it a subject of interest in studies related to antibiotic resistance and hospital-acquired infections. Its presence in both health and disease contexts underscores its dual role as both a beneficial resident and a potential threat within the human microbiome." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe 888066 AEWT00000000.1 Bac0004299 Pseudoalteromonas sp. MelDa3 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. MelDa3 888435 NZ_CM009130.1 Bac0004300 Psychrobacter sp. 4Bb Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. 4Bb 888436 NZ_CM009109.1 Bac0004301 Neisseria bacilliformis ATCC BAA-1200 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria bacilliformis microaerophile 888742 AFAY00000000.1 Bac0004302 Streptococcus sanguinis SK49 "Streptococcus sanguinis SK49 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. S. sanguinis SK49 is predominantly host-associated, suggesting a close relationship with its host organisms, which may include humans and other mammals.↵↵The organism's chain and pair formation is typical of the Streptococcus genus, which can influence its interactions within host environments, potentially facilitating colonization and persistence in specific niches. The facultative anaerobic nature of S. sanguinis SK49 may also allow it to thrive in diverse oxygen conditions, adapting to various microenvironments within the host.↵↵Overall, the ecological role of Streptococcus sanguinis SK49 could be significant in oral microbiomes, where its presence might contribute to the balance of microbial communities and influence host health. Understanding its traits and behavior in host-associated environments may provide insights into its functional role within microbial ecosystems, particularly in relation to health and disease dynamics in the oral cavity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888808 AFFO00000000.1 Bac0004303 Streptococcus sanguinis SK150 "Streptococcus sanguinis SK150 is a Gram-positive coccus that typically forms chains and pairs, reflecting its characteristic cell arrangement. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, making it adaptable to various host-associated habitats. ↵↵S. sanguinis is primarily known for its association with the human oral cavity, where it plays a role in the complex microbial ecosystem of dental plaque. While the specific ecological interactions of S. sanguinis SK150 within its host are not fully elucidated, its presence in the oral microbiome suggests it may contribute to oral health by competing with pathogenic bacteria and maintaining a balanced microbial community. ↵↵The adaptability of S. sanguinis SK150 to varying oxygen levels, alongside its ability to form specific arrangements, may enhance its survival and colonization within the dynamic environment of the oral cavity. Further research into its metabolic pathways and interactions with other microbial species could provide deeper insights into its functional role within the host-associated microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888811 AEXY00000000.1 Bac0004304 Streptococcus sanguinis SK160 "Streptococcus sanguinis SK160 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its capacity to grow in both the presence and absence of oxygen, which may confer advantages in various host-associated environments. ↵↵Streptococcus sanguinis, as a species, is commonly found in the oral cavity, where it is part of the normal microbiota. The ability of SK160 to thrive in a host-associated habitat suggests that it may play a role in the microbial ecology of the oral microbiome, potentially contributing to oral health by outcompeting pathogenic bacteria. Its chain and pair arrangements may facilitate colonization and adherence to surfaces within the host, such as tooth enamel or mucosal tissues, which could be significant for its ecological interactions.↵↵Further research into the specific interactions and functions of Streptococcus sanguinis SK160 within the oral microbiome could provide insights into its potential roles in maintaining microbial balance and health in the host. Understanding its ecological niche may also illuminate its contributions to oral and systemic health, highlighting the importance of this strain in the context of host-microbe interactions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888812 AEXZ00000000.1 Bac0004305 Streptococcus sanguinis SK330 "Streptococcus sanguinis SK330 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Streptococcus sanguinis SK330 is host-associated, suggesting that it resides predominantly in specific host organisms, which may play a role in its ecological interactions and potential contributions to the host's microbiome.↵↵The arrangement of cells in chains or pairs is a distinctive morphological trait of this species, which may facilitate its colonization and establishment within host environments. The facultative anaerobic metabolism of S. sanguinis SK330 allows it to adapt to varying oxygen levels, likely aiding its survival in diverse niches within host tissues or oral cavities, where oxygen availability can fluctuate.↵↵In summary, the traits of Streptococcus sanguinis SK330 underscore its adaptability and significant role in its host-associated habitat. Given its presence in the oral cavity of humans and other mammals, it may contribute to the maintenance of microbial balance, highlighting the importance of such bacteria in oral health and overall host microbial ecology. Further research could elucidate its specific interactions with other microbial species and its potential implications for host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888813 AFBD00000000.1 Bac0004306 Streptococcus sanguinis SK353 "Streptococcus sanguinis SK353 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. This species is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may contribute to its adaptability in various host environments. S. sanguinis SK353 is primarily host-associated, suggesting a symbiotic relationship with its host organisms.↵↵Given its ecological niche, Streptococcus sanguinis SK353 likely plays a role in the oral microbiome, where its presence may influence dental health and oral ecology. The ability to thrive in varying oxygen conditions may facilitate its colonization in diverse microenvironments within the host, such as in the oral cavity, where oxygen levels can fluctuate. This adaptability could also suggest a potential role in maintaining microbial homeostasis among resident flora in the mouth. Further studies on this strain could elucidate its specific interactions within the host and its broader implications in oral microbiome dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888815 AEWY00000000.1 Bac0004307 Streptococcus sanguinis SK355 "Streptococcus sanguinis SK355 is a Gram-positive coccus that typically arranges itself in chains or pairs. This bacterium is classified as a facultative anaerobe, indicating its capability to grow in both the presence and absence of oxygen. As a host-associated microbe, S. sanguinis SK355 is likely to inhabit various niches within the human body, particularly in the oral cavity, where it may contribute to the complex microbiota of the dental biofilm.↵↵The chain and pair arrangement of S. sanguinis SK355 is characteristic of its genus, which is known for its diverse roles in human health and disease. The facultative anaerobic nature of this strain suggests it can adapt to fluctuating oxygen levels, a common feature in the dynamic environment of the oral microbiome. ↵↵Understanding the specific adaptations of S. sanguinis SK355 in host-associated environments could provide valuable insights into its potential interactions with other microbial species, as well as its role within the broader ecological framework of oral health. Further exploration of its metabolic pathways and ecological functions may elucidate its contributions to maintaining a balanced oral microbiome, thereby highlighting its importance in the context of oral health and disease prevention." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888816 AFFN00000000.1 Bac0004308 Streptococcus sanguinis SK408 "Streptococcus sanguinis SK408 is a Gram-positive coccus characterized by its arrangement in chains and pairs. This strain is a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. Typically found in host-associated habitats, S. sanguinis SK408 is part of the normal oral microbiota in humans, where it plays a role in the complex ecosystem of the oral cavity.↵↵The chain and pair arrangement of S. sanguinis SK408 may facilitate its interactions with other microbial species and host tissues, potentially contributing to its ecological niche within the oral environment. Understanding the characteristics of this strain is crucial, as it reflects the broader behavior of Streptococcus sanguinis in maintaining oral health and influencing dental biofilm formation. Its facultative anaerobic metabolism allows for versatility in nutrient acquisition, adapting to varying oxygen levels encountered in the oral cavity. ↵↵Overall, S. sanguinis SK408 exemplifies the intricate balance of microbial life in the human host, participating in both commensal relationships and the maintenance of oral health, which may have implications for further studies on oral microbiota and its interactions with systemic health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888818 AFBE00000000.1 Bac0004309 Streptococcus cristatus ATCC 51100 "Streptococcus cristatus ATCC 51100 is a Gram-positive, coccoid-shaped bacterium that prefers moderate to warm temperatures, classified as a mesophile, and is a chemoheterotroph. This species is primarily found in various body sites, including the oral cavity, the gastrointestinal tract, and the urogenital tract of humans, where it contributes to the complex microbial communities that inhabit these areas. It is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, allowing it to thrive in diverse environments within the human body. The Gram-positive nature of S. cristatus is characterized by a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during Gram staining, resulting in a purple color under the microscope. This structural feature contributes to its resilience and ability to survive in various habitats. As a coccoid-shaped organism, S. cristatus appears as spherical cells, a shape that is typical of many Streptococcus species. Its mesophilic nature indicates an optimal growth temperature of approximately 30-37°C, reflecting the typical physiological conditions found in the human body. As a chemoheterotroph, S. cristatus relies on organic compounds for its energy and carbon sources, which it metabolizes through fermentation and other biochemical pathways. This characteristic enables it to play a significant role in the digestion and breakdown of food within the gastrointestinal tract, as well as contributing to the health of the oral microbiome by competing with pathogenic organisms. S. cristatus has been studied for its potential probiotic properties, as it may help maintain a balanced microbiota and inhibit the growth of harmful bacteria. Its presence in the oral cavity is particularly important, as it plays a role in dental health by promoting a balanced microbial community that prevents the overgrowth of cavity-causing pathogens." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cristatus Positive Cocci Facultative anaerobe 889201 AEVC00000000.1 Bac0004310 Polyangium fumosum Pseudomonadati Myxococcota Polyangiales Polyangiaceae Polyangium Polyangium fumosum 889272 SSMQ00000000.1 Bac0004311 Spirochaeta africana DSM 8902 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta africana 889378 NC_017098.1 Bac0004312 Alkalitalea saponilacus "Alkalitalea saponilacus is a Gram-positive, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is characterized by its inability to form spores, which may influence its survival strategies in various environments. ↵↵Alkalitalea saponilacus is notable for its adaptation to alkaline conditions, as suggested by its genus name, which indicates a potential preference for environments with elevated pH levels. The combination of its anaerobic metabolism and the ability to thrive at physiological temperatures positions it as a candidate for study in biotechnological applications, especially in the context of bioremediation or bioprocessing in alkaline habitats. ↵↵Understanding the metabolic pathways and ecological roles of Alkalitalea saponilacus could provide insights into microbial community dynamics in alkaline environments, as well as contribute to the broader knowledge of microbial biodiversity in anaerobic ecosystems. This underscores the potential significance of Alkalitalea saponilacus in ecological studies and its relevance in microbial interactions within specialized habitats." Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Alkalitalea Alkalitalea saponilacus Gram-positive rod anaerobic 37 mesophilic non-spore-forming 889453 FUYV00000000.1 Bac0004313 Acinetobacter baumannii MDR-TJ "Acinetobacter baumannii MDR-TJ is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a chemoheterotrophic aerobe. This microbe thrives optimally at a temperature of 37.0°C, indicating its potential association with warm-blooded hosts or environments that mimic such conditions. As a heterotroph, A. baumannii MDR-TJ relies on organic compounds for its energy and carbon sources, allowing it to inhabit a variety of ecological niches.↵↵The broad habitat range of A. baumannii highlights its adaptability and potential for survival in diverse environments, including clinical settings where it can persist on surfaces and in biofilms. This trait may contribute to its relevance as a concern in healthcare-associated infections, although caution is warranted when inferring its pathogenic potential based solely on ecological and metabolic characteristics.↵↵Given its status as a multi-drug resistant strain (MDR-TJ), this bacterium underscores the challenges of antibiotic resistance in microbial populations, particularly in environments where selective pressures, such as antibiotic use, are prevalent. The resilience of A. baumannii in various habitats suggests a capacity for environmental persistence and transmission, further emphasizing the need for ongoing research into its ecological roles and potential impacts on public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 889738 NC_017847.1 Bac0004314 Candidatus Nanosalinarum sp. J07AB56 Methanobacteriati Methanobacteriota Candidatus Nanohaloarchaea Candidatus Nanosalinicola Candidatus Nanosalinarum sp. J07AB56 889962 AEIX00000000.1 Bac0004315 Acinetobacter sp. WC-141 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WC-141 903915 AMSS00000000.1 Bac0004316 Acinetobacter baumannii Naval-82 "Acinetobacter baumannii Naval-82 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism thrives optimally at a temperature of 37.0°C and is classified as a heterotrophic chemoheterotroph, indicating that it derives its energy from organic compounds. As an aerobe, A. baumannii Naval-82 requires oxygen for its metabolic processes.↵↵This microbe has been isolated from multiple habitats, showcasing its adaptability to various environmental conditions. The ability to survive and proliferate in diverse settings may facilitate its persistence in clinical environments, where it can be associated with opportunistic infections. The ecological versatility of A. baumannii Naval-82 may also reflect a broader resilience among Acinetobacter species, allowing them to occupy niches that range from soil and water to hospital surfaces.↵↵In summary, A. baumannii Naval-82 exemplifies a microbe with a significant capacity for adaptation, which may contribute to its survival in environments that are often inhospitable to other organisms. Understanding its traits and habitats can provide insights into its role in microbial communities and potential implications for public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 903921 AMSW00000000.1 Bac0004317 Acinetobacter sp. WC-743 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WC-743 903945 AMFQ00000000.1 Bac0004318 Microbacterium sediminis str. YLB-01 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sediminis 904291 LXMD00000000.1 Bac0004319 Staphylococcus pettenkoferi VCU012 "Staphylococcus pettenkoferi VCU012 is a Gram-positive, cocci-shaped bacterium belonging to the genus Staphylococcus. It is classified as a mesophile, thriving optimally at moderate temperatures, specifically between 30°C and 37°C. This microbe is a chemoheterotroph, meaning it derives its energy and carbon from organic compounds, and it exhibits facultative anaerobic respiration, allowing it to grow in both the presence and absence of oxygen. It can be found in various body sites across multiple species, particularly in human skin and mucosal surfaces, as well as in some animal hosts.The Gram-positive nature of *S. pettenkoferi VCU012* indicates a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. Its cocci shape enhances its survival in clusters, often found in the characteristic grape-like formations of staphylococci. As a mesophile, it can tolerate and adapt to a wide range of temperatures, making it versatile for colonization in different hosts. Being a chemoheterotroph means that *S. pettenkoferi VCU012* predominantly relies on organic matter for energy and growth, engaging in metabolic processes that can lead to various biochemical interactions with the host. Its facultative anaerobic characteristics allow it to thrive even in low-oxygen environments, which is particularly advantageous for colonization within the host's body where oxygen levels can fluctuate. *Staphylococcus pettenkoferi VCU012* has garnered interest due to its role in both symbiotic relationships and potential pathogenicity. Its presence in the human microbiome suggests it may play a role in maintaining skin health, yet it also has the potential to cause infections, particularly in immunocompromised individuals. The duality of its nature as both a commensal and a potential pathogen highlights the complex relationships microbes can have with their hosts." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pettenkoferi Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Mesophilic Host epidermis Nonsporulating 904314 AGUA00000000.1 Bac0004320 Staphylococcus aureus subsp. aureus 21204 "Staphylococcus aureus subsp. aureus 21204 is a Gram-positive coccus that typically arranges itself in clusters or singles. This bacterium is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. It is primarily associated with host organisms, indicating a potential for close interactions with animal or human microbiomes. Notably, its optimal growth temperature is 3.0°C, which suggests that this strain may be adapted to cooler environments, possibly influencing its ecological niche and survival strategies.↵↵The cluster formation characteristic of S. aureus may play a role in its ability to form biofilms, which can enhance its resilience in host-associated habitats. Furthermore, the facultative nature of its oxygen requirement allows this microbe to occupy diverse ecological niches, potentially contributing to its adaptability in various host environments. Understanding the specific adaptations and interactions of S. aureus subsp. aureus 21204 within host-associated habitats could provide insights into its ecological roles and the dynamics of microbial communities in which it participates." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 904733 AFTP00000000.1 Bac0004321 Nonlabens ulvanivorans str. JCM19298 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens ulvanivorans 906888 BBMK00000000.1 Bac0004322 Treponema brennaborense DSM 12168 This strain is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema brennaborense DSM 12168 Negative Yes Anaerobic Mesophilic HostAssociated Free living Bovine 906968 NC_015500.1 Bac0004323 Helicobacter pylori India7 str. Ind7 "Helicobacter pylori India7 str. Ind7 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, aligning with its adaptation to a host-associated habitat, commonly found in the gastrointestinal tract of mammals. ↵↵As a member of the Helicobacter genus, H. pylori India7 str. Ind7 exhibits the typical features of its relatives, including the ability to survive in acidic environments, which is crucial for colonization within the gastric mucosa. The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for growth, a trait that is essential for its survival in the oxygen-limited conditions of the stomach.↵↵The adaptation to a host-associated habitat suggests that H. pylori India7 str. Ind7 may play a role in the complex microbiota of the gastric environment, potentially influencing digestive processes or host immune responses. The unique physiological traits of this strain highlight its role within the broader context of microbial interactions in the gastrointestinal ecosystem, warranting further investigation into its specific contributions to host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 907238 NC_017372.1 Bac0004324 Helicobacter pylori SouthAfrica7 "Helicobacter pylori SouthAfrica7 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain is optimally active at a temperature of 37.0°C, which aligns with its association with host environments, such as the human gastric epithelium. ↵↵As a member of the Helicobacter genus, H. pylori SouthAfrica7 is adapted to survive under low oxygen conditions, a trait that enables it to colonize the acidic environment of the stomach effectively. Its microaerophilic nature suggests a specific requirement for reduced oxygen levels, which may influence its metabolic processes and interactions with the host's immune responses.↵↵Given its habitat and physiological characteristics, H. pylori SouthAfrica7 may play a role in the complex interactions within the gastric microbiome. Its presence in this niche highlights the importance of studying specific strains in understanding the diversity and functionality of microbial communities associated with human health and disease. The adaptation of H. pylori SouthAfrica7 to both the acidic gastric environment and microaerophilic conditions provides insight into the evolutionary pressures that shape the survival strategies of gastrointestinal microbes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 907239 NC_017373.1 Bac0004325 Treponema saccharophilum DSM 2985 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema saccharophilum anaerobic 907348 AGRW00000000.1 Bac0004326 Eremococcus coleocola ACS-139-V-Col8 "Eremococcus coleocola ACS-139-V-Col8 is a Gram-positive, spherical bacterium characterized by its anaerobic to microaerophilic oxygen requirement. This organism exhibits a unique morphology, being cocci in shape, which is typical for many Gram-positive bacteria. The anaerobic nature of Eremococcus coleocola suggests that it thrives in environments with limited oxygen, a trait that may influence its ecological niche and metabolic pathways.↵↵Given its Gram-positive status, Eremococcus coleocola likely possesses a thick peptidoglycan layer in its cell wall, which is a defining feature of this group. Such structural attributes may contribute to its resilience in anaerobic environments, potentially allowing it to colonize specific ecological niches where other microorganisms may struggle to survive. ↵↵The potential for Eremococcus coleocola to exist as a microaerophile indicates that it may also tolerate low levels of oxygen, which could further enhance its adaptability in fluctuating environments. This adaptability could play a role in its interactions with other microbial populations, potentially contributing to complex microbial communities.↵↵While specific ecological roles and interactions remain to be fully elucidated, the traits of Eremococcus coleocola ACS-139-V-Col8 suggest it may be integral to processes such as organic matter decomposition or nutrient cycling in anaerobic ecosystems. Further research into its metabolic capabilities and interactions with other microorganisms may provide insights into its ecological significance." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Eremococcus Eremococcus coleocola Gram-positive sphere anaerobic / microaerophile 908337 AENN00000000.1 Bac0004327 Peptoniphilus harei ACS-146-V-Sch2b "Peptoniphilus harei ACS-146-V-Sch2b is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites across different species, including the human gut, skin, and respiratory tract, as well as in animals and environmental samples, and is an obligate anaerobe. The gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, providing it with a robust structure. Its rod-shaped morphology allows for efficient movement and colonization in its preferred environments. As a mesophilic microbe, Peptoniphilus harei ACS-146-V-Sch2b grows best in moderate temperatures, typically between 20-45°C, making it well-suited for inhabiting the human body and other warm environments. As a chemoheterotroph, Peptoniphilus harei ACS-146-V-Sch2b relies on external sources of energy and organic compounds to sustain its growth and survival. It is capable of breaking down complex molecules, such as peptides and amino acids, to obtain the necessary nutrients. The microbe's presence in various body sites across different species highlights its adaptability and ability to thrive in diverse environments. As an obligate anaerobe, Peptoniphilus harei ACS-146-V-Sch2b is strictly dependent on the absence of oxygen to survive, which is reflected in its metabolism and energy production pathways. Peptoniphilus harei ACS-146-V-Sch2b has been identified as a key player in the fermentation of peptides and amino acids, producing short-chain fatty acids and other metabolites that contribute to the development of its ecological niche. Its unique metabolic capabilities make it a subject of research in the fields of microbiology and biotechnology, with potential applications in the production of bioactive compounds and the development of novel therapeutics." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus harei Positive No Anaerobe 37 Chemoheterotroph Mesophilic Host gut 908338 AENP00000000.1 Bac0004328 Limosilactobacillus oris PB013-T2-3 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus oris 908339 AEKL00000000.1 Bac0004329 Clostridium sp. HGF2 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. HGF2 908340 AENW00000000.1 Bac0004330 Paenibacillus sp. HGF5 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. HGF5 908341 AEXS00000000.1 Bac0004331 Psychroflexus halocasei "Psychroflexus halocasei is a Gram-negative, rod-shaped bacterium characterized by its ability to thrive in aerobic conditions, with an optimal growth temperature of approximately 29.0 °C. This microbe is notable for its adaptation to cold environments, which is reflected in its name, as ""Psychroflexus"" suggests a psychrophilic nature. ↵↵The organism's Gram-negative cell wall structure, featuring a thin peptidoglycan layer and an outer membrane, is typical of this group of bacteria and may confer certain advantages in diverse environmental conditions, particularly in nutrient-rich saline environments where it is often found. The aerobic requirement indicates that Psychroflexus halocasei relies on oxygen for its metabolic processes, which may influence its distribution in various ecological niches.↵↵This bacterium's optimal growth temperature suggests it may play a role in biogeochemical cycles in colder habitats, such as polar regions or deep-sea environments, where it could contribute to the degradation of organic matter under low-temperature conditions. Its metabolic capabilities in such ecosystems may be important for understanding nutrient cycling and microbial interactions in extreme environments. The specific ecological roles and interactions of Psychroflexus halocasei remain an area for further exploration, particularly in the context of climate change and its impacts on microbial community dynamics in cold habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Psychroflexus Psychroflexus halocasei Gram-negative rod non-motile aerobic 29 mesophilic 908615 FNQF00000000.1 Bac0004332 Prevotella dentalis DSM 3688 "Prevotella dentalis DSM 3688 is a Gram-negative, anaerobic bacterium that thrives in temperatures ranging from mesophilic to thermophilic, falling under the category of moderate-temperature preference. It is a heterotroph that derives its energy from the breakdown of organic compounds, specifically utilizing a fermentative metabolism. This microbe produces ATP through the process of substrate-level phosphorylation, which involves the conversion of one molecule of substrate into another, resulting in the release of energy. In terms of its morphology, Prevotella dentalis DSM 3688 displays a unique rod-shaped structure, with a length of around 0.5-1.2 μm and a width of 0.3-0.6 μm. It has a capacity to colonize various body sites, including the oral cavity, where it is typically found in the dental plaque. This microbe is an obligate anaerobe, meaning it is unable to survive in the presence of oxygen. It exhibits a preference for a low-oxygen environment, characteristic of anaerobic microorganisms. The absence of oxygen allows Prevotella dentalis DSM 3688 to thrive, utilizing alternative metabolic pathways to generate energy. Interestingly, the species has been associated with various oral diseases, including periodontitis, a chronic inflammatory condition affecting the gums and surrounding tissues. Further research has revealed that Prevotella dentalis DSM 3688 plays a critical role in the development of this disease, highlighting the importance of understanding the interactions between microorganisms and their host. Despite its role in oral health, Prevotella dentalis DSM 3688 has also been linked to the breakdown of complex carbohydrates, such as cellulose, contributing to its ecological significance in dental plaque ecosystems. Overall, this microbe's unique characteristics and metabolic capabilities make it an important component of the oral microbiome, warranting further investigation to better comprehend its mechanisms and interactions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella dentalis Negative No 1 Anaerobic Chemoheterotroph Mesophilic Host gut Nonsporulating 908937 NC_019960.1 Bac0004333 Rhizobium subbaraonis "Rhizobium subbaraonis is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobe/anaerobe nature, allowing it to thrive in varying oxygen conditions. This species exhibits optimal growth at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵As a member of the Rhizobium genus, R. subbaraonis is recognized for its symbiotic relationships with leguminous plants, where it contributes to nitrogen fixation, an essential process for enhancing soil fertility. The ability of this microbe to adapt to both aerobic and anaerobic environments suggests a versatile metabolic capability, enabling it to occupy diverse ecological niches within soil and plant root zones.↵↵The facultative anaerobic metabolism of R. subbaraonis may facilitate its persistence in different soil conditions, including those with fluctuating oxygen levels, thereby enhancing its ecological resilience. Furthermore, the optimal growth temperature aligns with typical environmental conditions in temperate regions, suggesting its potential prevalence in agricultural systems where legumes are cultivated. This adaptability not only underscores the microbe's ecological significance in nitrogen cycling but also highlights its potential role in sustainable agricultural practices. Understanding the specific interactions and contributions of R. subbaraonis within its ecosystem may provide valuable insights into improving soil health and crop productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium subbaraonis Gram-negative rod facultative aerobe/anaerobe 25 mesophilic 908946 OBQD00000000.1 Bac0004334 Actinokineospora spheciospongiae str. CECT 8578 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora spheciospongiae 909613 QHCP00000000.1 Bac0004335 Actinokineospora spheciospongiae str. EG49 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora spheciospongiae 909613 AYXG00000000.1 Bac0004336 Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 "Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 is a Gram-negative bacterium characterized by its spirilla shape and capability to exist in both single and chain arrangements. This strain thrives optimally at 37.0°C and exhibits microaerophilic growth, indicating its preference for environments with reduced oxygen levels. As a chemoorganotroph, it derives its energy from organic compounds, which aligns with its host-associated habitat, typically found within the gastrointestinal tracts of various hosts.↵↵The microaerophilic nature of S. Typhimurium ST4/74 suggests an adaptation to specific ecological niches where oxygen is limited, which may be critical for its survival and proliferation in host environments. This adaptation may also influence its interactions with the host microbiota, potentially affecting the overall microbial community structure. Understanding these traits can provide insights into the ecological roles of S. Typhimurium and its adaptations to host-associated habitats, highlighting the complexity of host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 909946 NC_016859.1 Bac0004337 Dietzia cinnamea P4 "Dietzia cinnamea P4 is a Gram-positive, rod-shaped bacterium that falls under the category of thermophiles, thriving optimally at elevated temperatures. It is a chemoheterotroph, deriving its energy and carbon from organic compounds while exhibiting a facultative anaerobic metabolism, allowing it to survive in both aerobic and anaerobic environments. This versatile microbe can be found in various environments, including soil, water, and diverse biological substrates, making it adaptable to numerous body sites across different host species. As a Gram-positive bacterium, *Dietzia cinnamea P4* possesses a thick peptidoglycan layer in its cell wall, which is characteristic of this group and aids in its resilience and ability to withstand environmental stresses. Its rod shape contributes to its motility and ability to colonize different niches. The thermophilic nature of this organism implies that it can thrive at high temperatures, which is particularly beneficial in hot environments, such as hot springs or compost piles.Being a chemoheterotroph, *Dietzia cinnamea P4* cannot produce its own energy through photosynthesis; instead, it relies on organic matter for nutrition. Its facultative anaerobic capabilities enable it to adapt to varying oxygen levels, utilizing fermentation pathways in the absence of oxygen while preferring aerobic respiration when possible. Furthermore, *Dietzia cinnamea P4* is noted for its unique metabolic properties, including the potential to degrade complex organic compounds, such as hydrocarbons, making it significant in bioremediation applications. Its ability to thrive in diverse environments and utilize different substrates positions it as an organism of interest for studies related to environmental microbiology and biotechnology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia cinnamea Positive Aerobe 910954 AEKG00000000.1 Bac0004338 Pseudovibrio sp. FO-BEG1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Pseudovibrio Pseudovibrio sp. FO-BEG1 911045 NC_016646.1 Bac0004339 Caldanaerobacter subterraneus "Caldanaerobacter subterraneus is a gram-positive, rod-shaped microbe that thrives in thermophilic environments, classified as a chemoheterotroph, and can be found in all body sites in various species, specifically as an obligate anaerobe. Its gram-positive nature indicates the presence of a thick peptidoglycan layer in its cell wall, providing structural support and shape to the microbe. The rod-shaped morphology allows for efficient movement and absorption of nutrients in its surroundings. As a thermophile, Caldanaerobacter subterraneus prefers high-temperature environments, typically above 50°C, which is ideal for its metabolic processes.As a chemoheterotroph, this microbe relies on organic compounds for energy and carbon sources, breaking down complex molecules to sustain its growth and survival. Its ability to inhabit all body sites in various species highlights its adaptability and versatility in different environments. The obligate anaerobic nature of Caldanaerobacter subterraneus means it cannot survive in the presence of oxygen, instead relying on alternative electron acceptors to generate energy. This unique characteristic allows the microbe to thrive in deep subsurface environments, such as hot springs and oil reservoirs, where oxygen is scarce. Caldanaerobacter subterraneus plays a significant role in the degradation of organic matter and the cycling of nutrients in these ecosystems, and its unique properties have led to its use in industrial applications, such as the production of biofuels and the remediation of contaminated environments." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Caldanaerobacter Caldanaerobacter subterraneus No 1 Anaerobic Chemoheterotroph Thermophilic Multiple Nonsporulating 911092 LGEY00000000.1 Bac0004340 Eilatimonas milleporae str. DSM 25217 "Eilatimonas milleporae str. DSM 25217 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microorganism thrives optimally at a temperature of 29.0°C, suggesting a preference for moderately warm environments. The Gram-negative cell wall structure indicates the presence of an outer membrane, which may contribute to its physiological versatility in various ecological niches.↵↵The aerobic requirement of Eilatimonas milleporae str. DSM 25217 implies that it engages in oxygen-dependent respiration, potentially influencing its distribution in environments where oxygen levels are adequate. The absence of sporulation indicates that this strain relies on vegetative growth for reproduction and survival, which may limit its resilience to extreme environmental stressors compared to spore-forming bacteria.↵↵Given its optimal growth temperature and aerobic lifestyle, Eilatimonas milleporae str. DSM 25217 may be well-suited to inhabit marine environments or coral reef ecosystems, where temperatures are typically stable and oxygen is plentiful. This positioning could allow it to play a role in the microbial community dynamics associated with coral health and nutrient cycling, reflecting the intricate relationships between microorganisms and their marine habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Kordiimonadales Kordiimonadaceae Eilatimonas Eilatimonas milleporae Gram-negative rod aerobic 29 mesophilic non-spore-forming 911205 REFR00000000.1 Bac0004341 Mycolicibacterium iranicum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium iranicum 912594 LQPC00000000.1 Bac0004342 Mycolicibacterium iranicum str. H39 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium iranicum 912594 LWCS00000000.1 Bac0004343 Salmonella enterica subsp. enterica serovar Inverness str. R8-3668 "Salmonella enterica subsp. enterica serovar Inverness str. R8-3668 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This strain thrives optimally at a temperature of 37.0°C, aligning with the typical conditions found within host organisms. As a chemoorganotroph, S. enterica serovar Inverness str. R8-3668 derives its energy from organic compounds, which is consistent with its habitat as a host-associated microbe.↵↵The ability of this strain to grow in microaerophilic conditions suggests a specialized adaptation to environments where oxygen levels are lower than atmospheric levels. This trait may confer advantages in certain host-associated niches, where oxygen availability fluctuates. The formation of chains could also play a role in its survival and interaction with the host environment, potentially influencing its capacity for colonization or persistence within specific tissues.↵↵In summary, the ecological implications of S. enterica serovar Inverness str. R8-3668's microaerophilic nature and its chemoorganotrophic metabolism may reflect a finely tuned adaptation that enables it to exploit organic substrates in the complex microenvironments found within host organisms, hinting at its potential role in microbial communities associated with animal hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913075 AFCO00000000.1 Bac0004344 Salmonella enterica subsp. enterica serovar Johannesburg "Salmonella enterica subsp. enterica serovar Johannesburg is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This organism thrives at an optimal temperature of 37°C, which coincides with the typical body temperature of its warm-blooded hosts. As a chemoorganotroph, S. enterica serovar Johannesburg derives its energy from organic compounds, reflecting its adaptation to a host-associated habitat where it may utilize various substrates derived from host metabolism.↵↵The microaerophilic nature of this serovar suggests that it thrives in environments with reduced oxygen levels, which is consistent with its potential colonization in the gastrointestinal tracts of animals and humans. The chain arrangement of the cells may facilitate specific interactions within these host environments, potentially influencing its ecological dynamics and interactions with the host microbiome.↵↵Understanding the ecological niche and metabolic capabilities of S. enterica serovar Johannesburg can provide insights into its role in microbial communities associated with gastrointestinal habitats. The ability to adapt to microaerophilic conditions may also shed light on its resilience and survival strategies in fluctuating environments within the host, highlighting the intricate relationships between pathogens and their hosts in various ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913076 LHOL00000000.1 Bac0004345 Salmonella enterica subsp. enterica serovar Wandsworth str. A4-580 "Salmonella enterica subsp. enterica serovar Wandsworth str. A4-580 is a Gram-negative bacterium characterized by its spirilla shape, which can be observed as singles or in chain arrangements. This strain is classified as a chemoorganotroph, indicating that it derives energy from organic compounds, and it has a preference for microaerophilic conditions, thriving in environments with reduced oxygen levels. The optimal growth temperature for this strain is 37.0°C, reflecting its adaptation to host-associated habitats, where it is likely to encounter physiological temperatures.↵↵As a member of the Salmonella genus, serovar Wandsworth is part of a broader group of bacteria known for their association with various hosts, including humans and animals. This strain’s microaerophilic nature may confer certain advantages within host environments, potentially influencing its metabolic pathways and interactions with the host's immune system. The ability to form chains may also play a role in its survival and colonization strategies in host-associated niches, suggesting a potential for cooperative behaviors among cells. Understanding these traits can provide insights into the ecological dynamics of Salmonella in host environments, highlighting the complexity of its interactions within microbial communities and with host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913086 AFCX00000000.1 Bac0004346 Arcobacter ellisii str. LMG 26155 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii 913109 NZ_CP032097.1 Bac0004347 Salmonella enterica subsp. enterica serovar Alachua str. R6-377 "Salmonella enterica subsp. enterica serovar Alachua str. R6-377 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found within host organisms. As a chemoorganotroph, S. enterica serovar Alachua utilizes organic compounds as its energy source, indicating a reliance on host-derived nutrients for growth and survival.↵↵The specific habitat of this strain is host-associated, suggesting an ecological niche that may involve interactions with the host's microbiota or immune system. Given its microaerophilic nature, S. enterica serovar Alachua likely occupies environments within the host that have limited oxygen availability, which could influence its metabolic processes and interactions with other microbial species present. ↵↵Understanding the unique adaptations of Salmonella enterica serovar Alachua str. R6-377, particularly its growth in microaerophilic conditions within a host, may provide insights into its ecological role and potential responses to host immune mechanisms. This context is crucial for further investigations into its biology and the implications for host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913241 AFCJ00000000.1 Bac0004348 Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 "Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 (also known as DSM 20001) is a rod-shaped bacterium belonging to the genus Loigolactobacillus. As a member of the Lactobacillaceae family, this subspecies is characterized by its distinct morphological features and its potential applications in various biotechnological processes.↵↵The rod shape of L. coryniformis subsp. coryniformis is typical of many lactic acid bacteria, which are known for their fermentation capabilities. While specific metabolic pathways and fermentation products for this strain are not detailed here, members of the Lactobacillus genus commonly participate in the fermentation of carbohydrates, leading to the production of lactic acid. This process is essential in various food preservation methods, particularly in dairy products and fermented foods.↵↵This strain is of interest for its potential probiotic properties, as many Lactobacillus species contribute beneficially to gut health and may enhance the microbiota balance in the gastrointestinal tract. Furthermore, the ability of L. coryniformis subsp. coryniformis to thrive in fermented environments suggests a role in the production of fermented foods and beverages, contributing to food safety and preservation through acidification.↵↵In summary, Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 exemplifies the functional diversity of rod-shaped lactic acid bacteria, highlighting their significance in both ecological contexts and industrial applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus coryniformis Rod 913848 AZCN00000000.1 Bac0004349 Kangiella geojedonensis str. YCS-5 "Kangiella geojedonensis strain YCS-5 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0°C and requires aerobic conditions for survival. This microbe showcases distinct morphological and physiological characteristics that align with its classification within the Kangiella genus. The Gram-negative nature indicates a thinner peptidoglycan layer in its cell wall, which is a common feature among many aquatic and soil bacteria, potentially influencing its environmental adaptability.↵↵The rod shape of K. geojedonensis str. YCS-5 may confer advantages in motility and nutrient uptake, which are critical for survival in various environments. The aerobic requirement suggests that this organism is likely involved in processes that require oxygen, which might include the degradation of organic materials or participation in biogeochemical cycles.↵↵Given its optimal growth at 29.0°C, Kangiella geojedonensis str. YCS-5 may thrive in moderately warm environments, such as those found in certain freshwater ecosystems. This temperature preference indicates its potential role in the microbial communities of these habitats, where it may contribute to nutrient cycling and the overall health of the ecosystem. Understanding the specific functions and interactions of K. geojedonensis in its natural habitat could provide valuable insights into the dynamics of microbial life in similar ecological niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Kangiellales Kangiellaceae Kangiella Kangiella geojedonensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 914150 NZ_CP010975.1 Bac0004350 Flammeovirga pacifica str. WPAGA1 "Flammeovirga pacifica str. WPAGA1 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 32.0°C, suggesting a mesophilic lifestyle. This microbial strain is part of the genus Flammeovirga, which is characterized by its adaptation to specific environmental conditions. The Gram-negative nature of F. pacifica str. WPAGA1 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that is significant for its interaction with the environment and may influence its metabolic pathways and resistance to certain antibiotics.↵↵The rod shape of this bacterium is indicative of its cellular morphology, which can play a role in its motility and nutrient absorption capabilities. The optimal temperature of 32.0°C implies that F. pacifica str. WPAGA1 is likely adapted to environments with moderate thermal conditions, potentially including marine or estuarine ecosystems, where such temperatures are commonly found. ↵↵Understanding the physiological traits of Flammeovirga pacifica str. WPAGA1, particularly its temperature preference and structural characteristics, may provide insights into its ecological role in nutrient cycling or its interactions with other microorganisms in its habitat. Further studies could elucidate the metabolic pathways it employs to thrive in its niche, contributing to our knowledge of microbial diversity and function in marine ecosystems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga pacifica Gram-negative rod 32 mesophilic 915059 JRYR00000000.2 Bac0004351 Methylobacterium sp. AMS5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. AMS5 925818 NZ_CP006994.1 Bac0004352 Echinicola vietnamensis DSM 17526 "Echinicola vietnamensis DSM 17526 is a Gram-negative bacterium that thrives optimally at a temperature of 32.0 °C. This microbe, part of the diverse group of Echinicola species, is characterized by its distinctive cellular structure, which is typical of Gram-negative organisms, exhibiting a thin peptidoglycan layer surrounded by an outer membrane. The optimal growth temperature suggests that E. vietnamensis is likely adapted to moderate thermal environments, potentially indicative of its natural habitat.↵↵The physiological traits of Echinicola vietnamensis may provide insights into its ecological role, possibly linking it to specific environmental conditions or niches where similar temperature ranges are prevalent. Given the optimal growth temperature, it may play a significant role in microbial communities within aquatic or sediment environments that maintain temperatures around 32.0 °C. ↵↵This bacterium's adaptation to a defined thermal niche highlights the importance of temperature in shaping microbial diversity and community structure. Understanding such traits can enhance our knowledge of microbial ecology and the functional roles these organisms play in their environments, particularly in relation to nutrient cycling and interactions within microbial consortia. Further research on Echinicola vietnamensis could elucidate its contributions to ecosystem dynamics and microbial interactions in its native habitat." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Echinicola Echinicola vietnamensis Gram-negative motile 32 mesophilic 926556 NC_019904.1 Bac0004353 Thermanaerovibrio velox DSM 12556 Thermotogati Synergistota Synergistia Synergistales Synergistaceae Thermanaerovibrio Thermanaerovibrio velox anaerobic 926567 NZ_CM001377.1 Bac0004354 Anaerolinea thermophila UNI-1 "Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) is a strictly anaerobic, non-spore-forming, multicellular filamentous, Gram-negative bacterium isolated from thermophilic granular sludge in an upflow anaerobic sludge blanket reactor treating fried soybean-curd manufacturing waste water. The filaments are longer than 100 um and of 0.2-0.3 um in width. The optimum temperature for growth is around 55 degrees Celsius and growth occurs in the range 50-60 degrees Celsius. The optimum pH for growth is around 7.0 and growth occurs in the range pH 6.0-8.0. ( Adapted from PMID: 14657113 and http://www.ncbi.nlm.nih.gov/genomeprj/60099). (EBI Integr8)" Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Anaerolinea Anaerolinea thermophila UNI-1 Negative filament Yes 1 2 Anaerobic 45 Thermophilic Fresh water Free living Nonsporulating No 926569 NC_014960.1 Bac0004355 Acidiphilium multivorum AIU301 "Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) is an acidophilic, aerobic, anoxygenic, phototrophic, Gram-negative bacterium isolated from pyritic acid mine drainage. A.multivorum has high ability of resistance to various metals under acidic condition, and require high acidity for growth. It exhibits tolerance towards some heavy metal ions like nickel, zinc, cadmium and copper, and resistance to arsenate and arsenite. A. multivorum has zinc-chelated-bacteriochlorophylls (Zn-Bchl) a rather than Mg-Bchl a as the major photopigment. Among the mesoacidophilic bio-mining heterotrophs, A. multivorum has the unique ability to oxidize arsenite to arsenate as well as the capability to utilize a wide range of organic compounds for growth. These features make this bacterium a suitable host for carrying purpose specific genes for developing bioleaching operations. Current trends in biohydrometallurgy emphasize genetic engineering of bio-mining bacteria to achieve further success in this developing area of biotechnology. (Adapted from: http://www.bio.nite.go.jp/dogan/top and PMID: 17363056). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidiphilium Acidiphilium multivorum AIU301 Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic Fresh water Free living No 926570 NC_015182.1 Bac0004356 Parabacteroides goldsteinii DSM 19448 = WAL 12034 "Parabacteroides goldsteinii DSM 19448, also designated as WAL 12034, is a Gram-negative, anaerobic bacterium characterized by its inability to thrive in the presence of oxygen. This species is part of the diverse microbiota found in the gastrointestinal tract of humans and other mammals, where it plays a significant role in the fermentation of dietary fibers and the production of short-chain fatty acids. ↵↵As an anaerobe, P. goldsteinii relies on fermentation pathways to metabolize substrates, which is essential for its survival in oxygen-depleted environments. The metabolic processes of this microbe contribute to the overall balance of the gut microbiome, influencing host health and homeostasis. ↵↵Understanding the ecological niche and biochemical capabilities of Parabacteroides goldsteinii can provide insights into its potential benefits in maintaining gut health and its interactions with other members of the microbiome. The bacterium's ability to degrade complex carbohydrates suggests a role in the utilization of dietary fibers, which are critical for maintaining a healthy gut environment and preventing dysbiosis. Through these interactions, P. goldsteinii may help mitigate gastrointestinal disorders and contribute to the host's metabolic health, highlighting the intricate relationships within the microbial ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides goldsteinii Negative Anaerobe 927665 AQHV00000000.1 Bac0004357 Pseudanabaena biceps PCC 7429 Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Pseudanabaena Pseudanabaena biceps 927668 ALWB00000000.1 Bac0004358 Selenomonas ruminantium subsp. lactilytica TAM6421 "Selenomonas ruminantium subsp. lactilytica TAM6421 is a Gram-negative, non-sporulating anaerobic bacterium that thrives in the intestinal microflora of animals, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this subspecies relies on organic compounds as its energy source, reflecting its adaptation to the nutrient-rich environment of the intestinal tract.↵↵The anaerobic nature of Selenomonas ruminantium subsp. lactilytica TAM6421 indicates its dependence on low-oxygen conditions, typical of the gastrointestinal environments where it is commonly found. Its presence in the intestinal microflora suggests a potential role in the digestion and fermentation of carbohydrates, contributing to the overall metabolic processes within the host's gut ecosystem.↵↵Research on this subspecies may provide insights into its functional contributions to gut health and nutrition in ruminants and other animals. Understanding the metabolic pathways and interactions of Selenomonas ruminantium subsp. lactilytica TAM6421 with other gut microbiota could illuminate its significance in the maintenance of a balanced intestinal environment, potentially impacting nutrient absorption and host health. Thus, further exploration of this microbe may enhance our comprehension of microbial dynamics in animal intestines." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas ruminantium Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 927704 NC_017078.1 Bac0004359 Saccharomonospora glauca K62 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora glauca 37 mesophilic 928724 AGJI00000000.2 Bac0004360 Solitalea canadensis DSM 3403 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Solitalea Solitalea canadensis 929556 NC_017770.1 Bac0004361 Sulfurimonas gotlandica GD1 "Sulfurimonas gotlandica GD1 is a Gram-negative, curved or spiral-shaped bacterium that thrives optimally at a temperature of 16.0 °C. This organism is part of the sulfur-oxidizing bacteria group, which plays a critical role in biogeochemical sulfur cycles. The curved or spiral morphology of S. gotlandica GD1 may facilitate its motility, potentially enhancing its ability to navigate through varied aquatic environments where it may be found.↵↵The optimal growth temperature of 16.0 °C suggests that S. gotlandica GD1 is well-adapted to cooler marine environments, such as those found in deep-sea hydrothermal vents or cold seeps. This adaptation to lower temperatures may confer ecological advantages in specific niches characterized by reduced metabolic rates and distinct microbial communities.↵↵Research into the metabolic pathways and ecological roles of S. gotlandica GD1 can provide insights into the functioning of microbial ecosystems in extreme environments. The organism's ability to oxidize sulfur compounds may contribute significantly to nutrient cycling in its habitat, influencing both microbial diversity and the overall health of the ecosystem. Understanding the specific interactions of S. gotlandica GD1 within its environment could elucidate broader ecological dynamics and the importance of microbial life in maintaining ecosystem balance in cooler aquatic systems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas gotlandica Gram-negative curved/spiral 16 psychrotolerant 929558 NZ_AFRZ01000001.1 Bac0004362 Emticicia oligotrophica DSM 17448 "Emticicia oligotrophica DSM 17448 is a Gram-negative, non-spore-forming bacterium characterized by its rod-shaped morphology and aerobic metabolic requirements. This organism thrives optimally at a temperature of 37.0°C, suggesting it is well-adapted to moderate thermal environments, which is a common trait among many mesophilic bacteria.↵↵As a member of the microbial community, Emticicia oligotrophica may play a significant role in nutrient cycling within its ecological niche, particularly in oligotrophic environments where nutrient availability is limited. Its aerobic nature implies that it relies on oxygen for its metabolic processes, which could influence its interactions with other microorganisms and its role in biogeochemical cycles.↵↵Further studies could elucidate the specific contributions of Emticicia oligotrophica to its environment, particularly regarding its potential for biodegradation or nutrient assimilation within low-nutrient ecosystems. Understanding its metabolic pathways and ecological interactions may provide insights into the adaptability and resilience of microbial communities facing nutrient scarcity." Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia oligotrophica Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 929562 NC_018742.1 Bac0004363 Leptonema illini DSM 21528 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptonema Leptonema illini 929563 AHKT00000000.1 Bac0004364 Myroides odoratus DSM 2801 "Myroides odoratus DSM 2801 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and relies on chemoheterotrophic processes for energy. As a nonsporulating organism, it does not produce spores, which may influence its survival strategies in various environments. ↵↵The negative Gram stain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, characteristic of many bacteria within the phylum Proteobacteria. The rod shape of Myroides odoratus can be an advantageous morphology for nutrient acquisition and motility in its habitat. Being aerobic, this bacterium requires oxygen for its metabolic processes, suggesting a preference for oxygen-rich environments.↵↵Despite its nonsporulating nature, Myroides odoratus may possess mechanisms to withstand environmental fluctuations, which could be crucial for its persistence in diverse ecological niches. The chemoheterotrophic lifestyle indicates that it utilizes organic compounds as both a carbon and energy source, which could position it as a potential player in the degradation of organic matter in its ecosystem.↵↵Overall, the unique combination of traits in Myroides odoratus DSM 2801 highlights its role in nutrient cycling and suggests its potential interactions with other microorganisms in aerobic environments. Understanding its metabolic capabilities may provide insights into its ecological function, particularly in the context of organic matter decomposition and nutrient availability." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratus Negative Rod No 1 Aerobic Chemoheterotroph Nonsporulating 929704 NZ_CM001437.1 Bac0004365 Gibbsiella quercinecans str. FRB97 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Gibbsiella Gibbsiella quercinecans 929813 NZ_CP014136.1 Bac0004366 Oceanobacillus limi Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus limi 930131 FOHE00000000.1 Bac0004367 Pseudomonas brassicacearum Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas brassicacearum 930166 MOBO00000000.1 Bac0004368 Pseudomonas brassicacearum str. DF41 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas brassicacearum 930166 NZ_CP007410.1 Bac0004369 Alcanivorax dieselolei B5 "Alcanivorax dieselolei B5 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, suggesting a preference for mesophilic environments. As a member of the Alcanivorax genus, A. dieselolei B5 is particularly noteworthy for its ability to degrade hydrocarbons, specifically those found in diesel fuel. ↵↵The aerobic nature of A. dieselolei B5 indicates its reliance on oxygen for growth and metabolism, which positions it as an important player in bioremediation processes, especially in environments contaminated with petroleum products. The capacity of this organism to utilize hydrocarbons not only aids in the detoxification of polluted habitats but also highlights the potential for employing such microbes in environmental cleanup strategies.↵↵Furthermore, the physiological traits of A. dieselolei B5 suggest its adaptability to specific ecological niches where hydrocarbons are prevalent, such as oil spills or wastewater treatment facilities. This adaptability may be enhanced by its optimal growth temperature, which aligns with typical environmental conditions in temperate regions. The ability of A. dieselolei B5 to thrive in such contexts underscores the significance of microbial life in maintaining ecosystem health and resilience in the face of anthropogenic pollution." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alloalcanivorax Alloalcanivorax dieselolei Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 930169 NC_018691.1 Bac0004370 Ligilactobacillus animalis KCTC 3501 = DSM 20602 "Ligilactobacillus animalis KCTC 3501 = DSM 20602 is a Gram-positive, rod-shaped bacterium classified within the lactic acid bacteria group. This microbe exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a member of the genus Ligilactobacillus, it is likely to play a role in the fermentation processes commonly associated with various food products, contributing to the production of lactic acid and other metabolites.↵↵The facultative anaerobic nature of Ligilactobacillus animalis KCTC 3501 suggests its adaptability to different environmental conditions, which may enhance its survival and functionality in diverse habitats, including the gastrointestinal tracts of animals. This adaptability is significant as it may influence the microbe's interactions within complex microbial communities, potentially affecting nutrient cycling and host health.↵↵Overall, Ligilactobacillus animalis KCTC 3501 presents an intriguing subject for further research, particularly in understanding its roles in fermentation processes and its potential applications in food technology and probiotics. The adaptability to varying oxygen levels is a notable trait that could be leveraged in biotechnological applications, suggesting that it may serve beneficial functions in both fermentation and gut health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus animalis Positive Rod Facultative anaerobe 930942 AYYW00000000.1 Bac0004371 Yersinia enterocolitica subsp. palearctica Y11 "Currently, very little is known about the microbe 'Yersinia enterocolitica subsp. palearctica Y11'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia enterocolitica Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 930944 NC_017565.1 Bac0004372 Fructobacillus fructosus KCTC 3544 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructobacillus Fructobacillus fructosus 930946 JQBH00000000.1 Bac0004373 Halococcus morrhuae DSM 1307 "Halococcus morrhuae DSM 1307 is a gram-positive, coccoid-shaped microbe that thrives in psychrotolerant temperatures, classified as a chemoheterotroph, and can be found in various body sites of fish, such as the gills, skin, and gut, across different species. As a gram-positive microbe, its cell wall is composed of a thick peptidoglycan layer, providing resistance to extreme environments. The coccoid shape of Halococcus morrhuae allows it to maintain a stable structure, even in high-salt concentrations. Its psychrotolerant nature enables it to survive in a wide range of temperatures, from -20°C to 40°C, making it a versatile microbe. As a chemoheterotroph, Halococcus morrhuae relies on organic compounds for energy and carbon, which it obtains from its surroundings. This microbe can be found in various fish body sites, including the gills, skin, and gut, where it plays a role in the decomposition of organic matter. Halococcus morrhuae is an obligate aerobe, requiring oxygen to grow and survive, which is reflected in its ability to thrive in environments with high oxygen levels. The microbe's ability to tolerate high salt concentrations and survive in a wide range of temperatures makes it a unique organism. Halococcus morrhuae DSM 1307 has been found to produce carotenoid pigments, which provide protection against excessive light and oxidative stress, allowing it to thrive in environments with high levels of radiation." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus morrhuae Negative Cocci Aerobe 931277 AOMC00000000.1 Bac0004374 Acetobacterium woodii DSM 1030 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Acetobacterium Acetobacterium woodii anaerobic 931626 NC_016894.1 Bac0004375 Pantoea ananatis AJ13355 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea ananatis 932677 NC_017533.1 Bac0004376 Planococcus donghaensis MPA1U2 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus donghaensis 933115 AEPB00000000.1 Bac0004377 Streptomyces sp. SA15 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SA15 934019 NTGE00000000.1 Bac0004378 Rhodococcus sp. p52 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. p52 935199 NZ_CP016822.1 Bac0004379 Flavobacterium xueshanense "Flavobacterium xueshanense is a Gram-negative, non-spore-forming rod-shaped bacterium known for its aerobic metabolic requirements and optimal growth temperature of 16.0°C. This organism is a member of the Flavobacteriaceae family and is characterized by its distinct morphology and physiological traits, which enable it to thrive in cooler environments. ↵↵The rod shape of F. xueshanense is typical of many members within its genus, contributing to its ability to adapt to various ecological niches. As an aerobic organism, it relies on oxygen for its metabolic processes, which may influence its distribution in environments with sufficient oxygen levels, such as freshwater or soil ecosystems. ↵↵Understanding the growth conditions and characteristics of Flavobacterium xueshanense can provide insights into its role in biogeochemical cycles, particularly in cooler aquatic systems where it may contribute to the degradation of organic matter. Its adaptation to low temperatures suggests potential ecological significance in cold environments, where it may participate in nutrient cycling and influence microbial community dynamics. This highlights the importance of studying such microorganisms in understanding ecosystem functioning, especially in the context of changing environmental conditions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium xueshanense Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 935223 FONQ00000000.1 Bac0004380 Yersinia entomophaga str. MH96 "Yersinia entomophaga strain MH96 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 32.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for survival and reproduction in its environment. ↵↵Y. entomophaga is part of the larger Yersinia genus, which is known for its diverse ecological niches, primarily in association with various hosts. While the specific ecological role of strain MH96 is not detailed here, the traits observed suggest that it may be adapted to life in cooler environments, potentially influencing its interaction with other microorganisms and its overall ecological dynamics. The ability to grow optimally at 32.0°C could indicate a potential association with ectothermic hosts or environments where such temperatures are prevalent, such as in certain soil or decaying organic matter habitats. ↵↵Overall, the physiological traits of Yersinia entomophaga strain MH96 position it as a microbe of interest for understanding microbial interactions in various ecological contexts, especially in relation to its aerobic metabolism and growth conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia entomophaga Gram-negative rod aerobic 32 mesophilic non-spore-forming 935293 NZ_CP010029.1 Bac0004381 Helicobacter felis ATCC 49179 "Helicobacter felis is a microaerophilic, urease-positive, spiral-shaped bacterium found in the stomach of cats and dogs. They grow as rigid, spiral-shaped, gram-negative cells that are 0.4 um wide, 5 to 7.5 um long and have five to seven spirals per cell. This strain (the type strain) was isolated from the gastric mucosa of a cat. H. felis infection in cats induces lymphoid follicular hyperplasia, mild gastritis, and seroconversion, but is associated with normal gastric secretory function. It has also been isolated from humans with acute gastritis (adapted from PMID 1704791 and 10639446). (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter felis ATCC 49179 Negative Spirilla Yes 1 2 Aerobic Mesophilic HostAssociated Free living Felis catus Singles Nonsporulating Yes 936155 NC_014810.2 Bac0004382 Mogibacterium sp. CM50 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Mogibacterium Mogibacterium sp. CM50 936375 ALNL00000000.1 Bac0004383 Fusobacterium sp. CM21 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CM21 936562 AZYU00000000.1 Bac0004384 Klebsiella sp. OBRC7 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. OBRC7 936565 ALNJ00000000.1 Bac0004385 Selenomonas sp. FOBRC6 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. FOBRC6 936572 ALKG00000000.1 Bac0004386 Shuttleworthia sp. MSX8B Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Shuttleworthella Shuttleworthella sp. MSX8B 936574 JAQT00000000.1 Bac0004387 Streptococcus sp. ACS2 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. ACS2 936576 JALT00000000.1 Bac0004388 Streptococcus sp. AS20 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. AS20 936578 JANS00000000.1 Bac0004389 Streptococcus sp. CM6 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. CM6 936580 JATS00000000.1 Bac0004390 Veillonella sp. ACP1 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. ACP1 936588 ALKL00000000.1 Bac0004391 Lachnoanaerobaculum sp. OBRC5-5 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Lachnoanaerobaculum sp. OBRC5-5 936595 ALOA00000000.1 Bac0004392 Lachnoanaerobaculum sp. MSX33 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Lachnoanaerobaculum sp. MSX33 936596 AZXX00000000.1 Bac0004393 Bacillus sp. GZT Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. GZT 936600 LVVJ00000000.1 Bac0004394 Streptomyces kanasensis str. ZX01 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces kanasensis 936756 LNSV00000000.1 Bac0004395 Fulvimarina manganoxydans Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Fulvimarina Fulvimarina manganoxydans 937218 FWXR00000000.1 Bac0004396 Caldicoprobacter faecalis Bacillati Bacillota Clostridia Caldicoprobacterales Caldicoprobacteraceae Caldicoprobacter Caldicoprobacter faecalis anaerobic 937334 FOXR00000000.1 Bac0004397 Oxalobacteraceae bacterium IMCC9480 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Oxalobacteraceae bacterium IMCC9480 937450 AEPR00000000.1 Bac0004398 gamma proteobacterium IMCC1989 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales gamma proteobacterium IMCC1989 937772 AEVK00000000.1 Bac0004399 Taylorella equigenitalis MCE9 "Taylorella equigenitalis (strain MCE9) is a slow-growing microaerophilic, Gram-negative bacterium isolated in 2005 from the urethral fossa of a 4-year-old stallion from a stud farm in the Haute-Savoie (France). It is the causative agent of contagious equine metritis (CEM), a sexually transmitted infection of horses. CEM is characterized in infected mares by abundant mucopurulent vaginal discharge and a variable degree of vaginitis, endometritis, and cervicitis that usually result in temporary infertility or early abortion. Although no clinical signs have been observed in stallions, the infection is most frequently transmitted by carrier stallions, which are the main vector for the infection. (Adapted from PMID: 21278298). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Taylorella Taylorella equigenitalis MCE9 Negative Cocci No 1 2 Microaerophilic Mesophilic HostAssociated Free living Equus caballus No 937774 NC_014914.1 Bac0004400 Methanoplanus limicola DSM 2279 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoplanus Methanoplanus limicola 937775 NZ_CM001436.1 Bac0004401 Companilactobacillus futsaii str. Y97 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus futsaii 938155 NZ_CP040738.1 Bac0004402 Belnapia rosea "Belnapia rosea is a Gram-negative, spherical bacterium that thrives optimally at a temperature of 29.0°C and requires oxygen for growth, indicating its aerobic nature. This organism's Gram-negative staining characteristic suggests a complex cell wall structure, typical of many bacteria in this classification, which may confer certain advantages in its environmental niche. ↵↵The spherical morphology of B. rosea positions it within a diverse group of bacteria, where such shapes are often associated with specific ecological roles, including nutrient cycling and interactions with other microorganisms. The preference for an optimal growth temperature of 29.0°C implies that B. rosea may be well-suited to environments that maintain moderate thermal conditions, potentially influencing its distribution and interactions within microbial communities.↵↵Furthermore, the strict aerobic requirement of B. rosea indicates its reliance on oxygen for metabolic processes, which may affect its habitat selection and interactions with anaerobic microorganisms. This characteristic could suggest a role for B. rosea in the degradation of organic matter in oxygen-rich environments, contributing to the overall functionality of its ecosystem. As such, the ecological role of Belnapia rosea may extend beyond mere survival to include significant contributions to biogeochemical cycles, particularly in environments where aerobic processes dominate." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Belnapia Belnapia rosea Gram-negative sphere non-motile aerobic 29 mesophilic 938405 FMZX00000000.1 Bac0004403 Melissococcus plutonius ATCC 35311 No project description provided. (NCBI BioProject: bp_list[1]) Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Melissococcus Melissococcus plutonius ATCC 35311 Cocci No 1 Anaerobic 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 940190 NC_015517.1 Bac0004404 Ignicoccus islandicus DSM 13165 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignicoccus Ignicoccus islandicus 940295 NZ_CP006867.1 Bac0004405 Escherichia coli O25b:H4 "Escherichia coli O25b:H4 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. E. coli O25b:H4 is commonly associated with host organisms, indicating a close relationship with its ecological niche. The optimal growth temperature for this strain is approximately 37.0°C, which corresponds to the body temperature of many warm-blooded hosts, further highlighting its host-associated nature.↵↵The facultative anaerobic metabolism of E. coli O25b:H4 enables it to adapt to varying oxygen levels, potentially facilitating its survival in diverse environments, such as the gastrointestinal tract of mammals. This adaptability may contribute to the bacterium's ability to persist in host-associated habitats despite fluctuating oxygen availability. Understanding the traits of E. coli O25b:H4, particularly its metabolic flexibility and temperature preference, can provide insights into its ecological roles and interactions within the microbiome of host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 NZ_CP015088.1 Bac0004406 Escherichia coli O25b:H4-ST131 str. EC958 "Escherichia coli O25b:H4-ST131 str. EC958 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. E. coli O25b:H4-ST131 str. EC958 is optimally active at 37.0°C, which aligns with the body temperature of many mammals, indicating its adaptation to a host-associated habitat.↵↵The strain's capacity to inhabit the host environment suggests a potential for complex interactions with the host microbiome and immune system. Such adaptations may facilitate its persistence within specific niches of the host, potentially influencing both microbial community dynamics and host health. Understanding the ecological role of E. coli O25b:H4-ST131 str. EC958 may provide insights into its interactions within the gastrointestinal microbiota and its responses to various physiological conditions experienced by the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941322 NZ_HG941718.1 Bac0004407 Cupriavidus phytorum str. MLR2-44 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus phytorum 942866 QKZN00000000.1 Bac0004408 Tardiphaga robiniae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Tardiphaga Tardiphaga robiniae aerobic 943830 LVYV00000000.1 Bac0004409 Veillonella sp. oral taxon 780 str. F0422 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. oral taxon 780 944564 AFUJ00000000.1 Bac0004410 Vibrio sinaloensis DSM 21326 str. DSMZ 21326 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sinaloensis 945550 AEVT00000000.1 Bac0004411 Actinoplanes sp. OR16 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes sp. OR16 946334 NZ_AP019371.1 Bac0004412 Candidatus Symbiobacter mobilis CR Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Candidatus Symbiobacter Candidatus Symbiobacter mobilis 946483 NC_022576.1 Bac0004413 Brevibacterium yomogidense "Brevibacterium yomogidense is a Gram-positive, rod-shaped bacterium that is characterized by its aerobic metabolism and non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for moderate environmental conditions. The Gram-positive nature of B. yomogidense suggests the presence of a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria of this classification and may play a role in its survival mechanisms in various habitats.↵↵Brevibacterium species are often involved in the fermentation processes of cheese and other dairy products, contributing to flavor and aroma development. While specific ecological roles of B. yomogidense within its environment remain to be fully elucidated, its aerobic requirement implies that it may inhabit oxygen-rich niches, potentially influencing microbial community dynamics in such settings. The ability to thrive at a moderate temperature suggests that B. yomogidense could be well-adapted to environments that are neither too extreme nor too cold, making it a candidate for study in biotechnological applications related to food science and fermentation. Overall, B. yomogidense exemplifies the diverse adaptations of bacteria to specific environmental conditions, reflecting the intricate interplay between microbial life and its ecological context." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium yomogidense Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 946573 FWFF00000000.1 Bac0004414 Flavobacterium araucananum "Flavobacterium araucananum is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism, thriving optimally at a temperature of 29.0°C. As a member of the Flavobacteriaceae family, this microbe is characterized by its distinct morphological and physiological traits, which contribute to its ecological role in various environments.↵↵The Gram-negative cell wall structure of F. araucananum is indicative of its sensitivity to certain antibiotics and its ability to form complex interactions in microbial communities. The rod shape of this organism may facilitate motility and nutrient uptake, allowing it to adapt effectively to its surroundings. ↵↵Given its aerobic nature, F. araucananum relies on the presence of oxygen for its metabolic processes, which may influence its distribution in environments where oxygen levels vary. The optimal growth temperature of 29.0°C suggests a preference for mesophilic conditions, which may align with habitat preferences in temperate regions, possibly in aquatic systems or associated with organic matter decomposition.↵↵Overall, F. araucananum's traits suggest it plays a significant role in carbon cycling within its ecosystem, potentially contributing to the degradation of organic materials and influencing nutrient dynamics in its habitat. Further research could elucidate its specific interactions with other microorganisms in these environments, enhancing our understanding of microbial community dynamics." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium araucananum Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 946678 MUGS00000000.1 Bac0004415 Actinotalea ferrariae CF5-4 "Actinotalea ferrariae CF5-4 is a Gram-positive, rod-shaped bacterium that exhibits aerobic respiration. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. The Gram-positive nature of A. ferrariae CF5-4 indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this group and may confer certain advantages in specific environments, such as resistance to desiccation.↵↵As an aerobic organism, A. ferrariae CF5-4 relies on oxygen for its metabolic processes, indicating its potential role in oxygen-rich ecosystems. Its rod shape may facilitate mobility and nutrient uptake, allowing it to effectively inhabit its ecological niche. Given these traits, A. ferrariae CF5-4 could play a significant role in nutrient cycling within its environment, contributing to the degradation of organic matter or the interaction with other microbial communities.↵↵Understanding the specific ecological roles of A. ferrariae CF5-4 may provide insights into its potential contributions to biogeochemical processes, particularly in environments where aerobic conditions prevail. Further exploration of its metabolic pathways and interactions with other microorganisms could illuminate its ecological significance and adaptability in various habitats." Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Actinotalea Actinotalea ferrariae Gram-positive rod non-motile aerobic 29 mesophilic 948458 AXCW00000000.1 Bac0004416 Streptomyces venezuelae ATCC 10712 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces venezuelae 953739 NC_018750.1 Bac0004417 Bacillus sp. 17376 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 17376 977905 AWXY00000000.1 Bac0004418 Deinococcus wulumuqiensis str. NEB 479 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis 980427 NZ_CP031163.1 Bac0004419 Methylomonas lenta str. R-45370 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas lenta 980561 LUUI00000000.1 Bac0004420 Methylosinus sp. R-45379 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylosinus Methylosinus sp. R-45379 980563 LUUM00000000.1 Bac0004421 Acinetobacter parvus DSM 16617 = CIP 108168 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter parvus 981333 APOM00000000.1 Bac0004422 Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 "Acinetobacter radioresistens DSM 6976, also known as NBRC 102413 and CIP 103788, is a Gram-negative, aerobic bacterium recognized for its remarkable resilience to ionizing radiation. This species is characterized by its rod-shaped morphology and typically thrives in oxygen-rich environments, which is indicative of its aerobic metabolic pathways. The ability to withstand high levels of radiation suggests that A. radioresistens possesses unique biochemical mechanisms that enhance its DNA repair processes and cellular protection against oxidative damage.↵↵As a member of the Acinetobacter genus, this microbe is likely to exhibit metabolic versatility, allowing it to utilize a range of carbon sources for growth. While specific pathogenicity traits are not indicated, the ecological role of A. radioresistens in various environments, particularly those subjected to high radiation levels, could be significant. Its ability to persist and potentially thrive in extreme conditions may contribute to its survival in diverse ecological niches, including contaminated environments or areas impacted by anthropogenic activities.↵↵Overall, Acinetobacter radioresistens DSM 6976 exemplifies microbial adaptation to extreme conditions, which not only underscores the evolutionary resilience of bacteria but also presents potential avenues for biotechnological applications where radiation resistance is advantageous." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter radioresistens Negative Aerobe 981334 APQF00000000.1 Bac0004423 Ruegeria conchae str. DSM 29317 "Ruegeria conchae strain DSM 29317 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0 °C. This species is part of the genus Ruegeria, which is known for its marine habitat associations. The Gram-negative nature of R. conchae indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a characteristic that often influences the bacterium’s interactions within its environment.↵↵As an aerobic organism, R. conchae requires oxygen for its metabolic processes, which suggests a potential role in nutrient cycling within its native ecological niches, likely in marine environments. The optimal growth temperature of 29.0 °C aligns with the typical thermal conditions found in many coastal waters, enabling R. conchae to thrive in these ecosystems.↵↵The inherent traits of Ruegeria conchae str. DSM 29317 highlight its specialization for life in nutrient-rich marine habitats, where it may engage in complex interactions with other microorganisms. This specialization could provide insights into the role of such bacteria in biogeochemical processes, particularly in the cycling of carbon and nitrogen in marine ecosystems. Overall, the physiological characteristics of R. conchae underscore its potential contribution to the microbial diversity and ecological dynamics of marine environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria conchae Gram-negative rod non-motile aerobic 29 mesophilic 981384 RCCT00000000.1 Bac0004424 Streptococcus pasteurianus ATCC 43144 "Streptococcus pasteurianus ATCC 43144 is a microorganism that thrives in temperatures between 25°C and 40°C, placing it in the mesophilic temperature preference category. This bacterium is a chemoheterotroph, relying on organic compounds as its energy source and converting them into energy through aerobic respiration. As a Gram-positive microbe, it exhibits a characteristic thick peptidoglycan layer, which stains purple under Gram staining. S. pasteurianus ATCC 43144 has a spherical shape, commonly referred to as a coccus, and most species of this microbe can be found in various body sites, including theupper respiratory tract, skin, and mucous membranes. This microbe is an obligate aerobe, requiring the presence of oxygen for growth and metabolic processes. As a chemoheterotroph, S. pasteurianus ATCC 43144 obtains its energy by breaking down pre-existing organic compounds. The bacterium's ability to survive and thrive in the presence of oxygen makes it a facultative anaerobe, although it can still tolerate low oxygen levels. Its preference for aerobic conditions allows it to utilize oxygen as a final electron acceptor during cellular respiration, resulting in the production of ATP. Despite being a relatively well-studied microbe, S. pasteurianus ATCC 43144 remains an essential tool in various scientific and industrial applications. Its ability to produce several enzymes, such as beta-glucuronidase and β-lactamase, makes it a valuable model organism for understanding enzyme function and regulation. Additionally, its robust growth and ability to form biofilms render it an attractive candidate for biotechnological applications, such as wastewater treatment and bioremediation. With its unique characteristics and versatility, S. pasteurianus ATCC 43144 continues to be an important microbe in the scientific community and beyond." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pasteurianus ATCC 43144 Positive Cocci No 1 Chemoheterotroph Homo sapiens Nonsporulating 981540 NC_015600.1 Bac0004425 Lacinutrix sp. 5H-3-7-4 Lacinutrix sp. 5H-3-7-4.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lacinutrix Lacinutrix sp. 5H-3-7-4 5H-3-7-4 983544 NC_015638.1 Bac0004426 Burkholderia cepacia ATCC 25416 "Burkholderia cepacia ATCC 25416 is a Gram-negative bacterium characterized by its microaerophilic nature, requiring reduced levels of oxygen for optimal growth. This organism is of interest in various fields, including microbiology and biotechnology, due to its metabolic versatility and ability to thrive in diverse environments. ↵↵As a member of the Burkholderia genus, B. cepacia ATCC 25416 is notable for its capacity to degrade a variety of organic compounds, which may contribute to its ecological role in the decomposition of organic matter. This bacterium can be found in soil and water environments, where it plays a part in nutrient cycling and may interact with other microbial communities. ↵↵The microaerophilic requirement suggests that B. cepacia ATCC 25416 may occupy ecological niches where oxygen concentrations are lower than atmospheric levels, such as in waterlogged soils or within biofilms. Its metabolic capabilities may also allow it to adapt to changing environmental conditions, making it a subject of interest for studies on microbial ecology and bioremediation. Further exploration of its ecological interactions could provide insights into its role in microbial communities and its potential applications in environmental biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 983594 NZ_CP034556.1 Bac0004427 Rubrivivax gelatinosus IL144 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Rubrivivax Rubrivivax gelatinosus anaerobic 983917 NC_017075.1 Bac0004428 Polaribacter sejongensis str. KCTC 23670 "Polaribacter sejongensis strain KCTC 23670 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic capabilities and thrives optimally at a temperature of 25.0°C. As a member of the Polaribacter genus, this microbe is characterized by its distinctive cellular morphology and growth conditions, which suggest an adaptation to specific environmental niches, potentially including marine or polar habitats.↵↵The Gram-negative nature of P. sejongensis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in its ecological interactions, such as resistance to some antibiotics and the ability to engage in complex microbial communities. The rod shape of this bacterium is typical of many members of the family, and it may play a role in nutrient absorption and motility, influencing its ecological fitness in aquatic environments.↵↵Given its aerobic requirement, P. sejongensis is likely involved in the cycling of organic matter in oxygen-rich environments, contributing to the overall dynamics of microbial communities. This aerobic metabolism suggests that it may participate in the degradation of organic compounds, thereby influencing nutrient availability and biogeochemical processes in its habitat. The specific adaptation of P. sejongensis to its optimal growth conditions offers insights into the microbial diversity and functional potential in polar and subpolar ecosystems, where temperature and oxygen levels can fluctuate significantly." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sejongensis Gram-negative rod non-motile aerobic 25 mesophilic 985043 NZ_CP019336.1 Bac0004429 Vulcanisaeta moutnovskia 768-28 "Vulcanisaeta moutnovskia (strain 768-28) is an obligate anaerobic, thermoacidophilic crenarchaeon isolated from the solfataric field close to Moutnovsky volcano in Kamchatka, Russia. V.moutnovskia has a pH range of growth from 3.5 to 6.5 and a temperature range from 60 to 98 degrees Celsius. It is a metabolically versatile archaeon capable of fermenting proteinaceous substrates and some sugars. Elemental sulfur and thiosulfate are reduced to hydrogen sulfide if added. (Adapted from PMID: 21398550). (HAMAP: VULM7)" Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia 768-28 No 1 1 Obligate anaerobic Hyperthermophilic No 985053 NC_015151.1 Bac0004430 Ruegeria halocynthiae "Ruegeria halocynthiae is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0°C. This microbe is part of the diverse microbial community found in marine environments, where it may play a role in the complex interactions among marine organisms. The classification as Gram-negative suggests that Ruegeria halocynthiae possesses a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions within the marine ecosystem.↵↵The rod shape of Ruegeria halocynthiae is characteristic of many bacteria, allowing for efficient nutrient uptake and motility in aquatic environments. While specific ecological roles and interactions with other organisms are not detailed, the presence of this bacterium in marine habitats suggests potential involvement in biogeochemical cycles, particularly in processes like nitrogen fixation or organic matter decomposition.↵↵In summary, Ruegeria halocynthiae exemplifies a specialized adaptation to marine conditions, thriving optimally at 29.0°C, and its Gram-negative nature and rod morphology likely confer advantages for survival and interaction in its ecological niche. Further studies could elucidate its specific roles and contributions to marine ecosystems, shedding light on its potential importance in maintaining marine biodiversity and ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria halocynthiae Gram-negative / Gram-positive rod non-motile 29 mesophilic 985054 FNNP00000000.1 Bac0004431 Paenibacillus terrae HPL-003 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus terrae 985665 NC_016641.1 Bac0004432 Pseudoscardovia radai Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Pseudoscardovia Pseudoscardovia radai anaerobic 987066 MWWR00000000.1 Bac0004433 Vibrio maritimus str. JCM 19240 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio maritimus 990268 BBMT00000000.1 Bac0004434 Methanothrix soehngenii GP6 str. GP-6 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii No Anaerobic Lithotroph Mesophilic Fresh water Free living Nonsporulating 990316 NC_015416.1 Bac0004435 Humitalea rosea str. DSM 24525 "Humitalea rosea str. DSM 24525 is a Gram-negative, rod-shaped bacterium that exhibits strict aerobic metabolism. This organism is part of a broader group of microbes that thrive in oxygen-rich environments, where it likely plays a role in various biochemical processes. The Gram-negative classification indicates that H. rosea possesses a distinctive outer membrane structure, which may influence its interactions with the surrounding environment and its susceptibility to certain antimicrobial agents.↵↵The rod shape of H. rosea is characteristic of many bacteria and may facilitate motility and nutrient uptake, enhancing its adaptability to diverse ecological niches. As an aerobic bacterium, H. rosea requires oxygen for its growth and metabolism, which suggests its potential involvement in aerobic biogeochemical cycles. These traits position H. rosea within microbial communities where oxygen is readily available, possibly contributing to processes such as organic matter decomposition or nutrient cycling in its habitat.↵↵In conclusion, the aerobic nature and specific morphological characteristics of Humitalea rosea str. DSM 24525 suggest its significant role in maintaining ecological balance within its environment, particularly in the breakdown of organic substrates in oxygen-rich ecosystems. Further studies may elucidate its specific functions and interactions within microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Humitalea Humitalea rosea Gram-negative rod non-motile aerobic 990373 QKYU00000000.1 Bac0004436 Meinhardsimonia xiamenensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Meinhardsimonia Meinhardsimonia xiamenensis 990712 FNFV00000000.1 Bac0004437 Polymorphum gilvum SL003B-26A1 "Polymorphum gilvum SL003B-26A1 is a type strain of a newly published novel species in the novel genus Polymorphum. It was isolated from a crude oil-polluted saline soil in Shengli Oilfield, China and could use the crude oil as the sole carbon source. Oil pollution has become a global issue because of its severe ecological impact and destruction. Bioremediation is proved to be an effective process to restore the oil polluted environments. The complete genome sequence of Polymorphum gilvum SL003B-26A1 provides new strategies for bioremediation of oil contaminated environment. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Polymorphum Polymorphum gilvum SL003B-26A1 Negative Yes 1 2 No 991905 NC_015258.1 Bac0004438 Escherichia coli O121:H19 "Escherichia coli O121:H19 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within its host-associated habitat. Optimal growth occurs at 37.0°C, which aligns with the body temperature of many warm-blooded hosts, indicating its adaptation to the gastrointestinal tract of mammals.↵↵This strain is part of the diverse E. coli species, which encompasses a wide range of strains with varying characteristics and ecological roles. While specific pathogenicity details for E. coli O121:H19 are not provided, the association of E. coli with the gastrointestinal tract suggests a potential role in nutrient processing and interaction with the host's microbiome. The capacity for facultative anaerobiosis may also enable this bacterium to utilize different metabolic pathways depending on the oxygen availability in its environment, which could influence its interactions within the host.↵↵The ability to exist in pairs or singly may provide advantages in colonization and competition with other gut microbes, further emphasizing the complexity of microbial dynamics in host-associated habitats. Understanding E. coli O121:H19's traits contributes to the broader knowledge of microbial ecology and the intricate relationships that exist within the gastrointestinal microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 991915 NZ_CP031911.1 Bac0004439 Escherichia coli O145:NM "Escherichia coli O145:NM is a Gram-negative, facultative anaerobic bacterium characterized by its rod-shaped morphology and occurrence in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological temperature of its warm-blooded hosts, suggesting a close association with mammalian environments. E. coli O145:NM is categorized as host-associated, indicating its prevalence in biological systems of animals, particularly in the intestines of mammals.↵↵The facultative anaerobic nature of E. coli O145:NM allows it to adapt to varying oxygen conditions, making it versatile in its habitat. This adaptability is a common trait among E. coli strains, facilitating their survival in both aerobic and anaerobic environments within the gastrointestinal tract. The ability to exist in pairs or as singles may influence its interactions with the host microbiome and other microbial communities, potentially affecting nutrient cycling and microbial dynamics within these ecosystems.↵↵Understanding the physiological traits of E. coli O145:NM provides valuable insights into its ecological role within host-associated environments. Its optimal growth temperature and oxygen requirements suggest it plays a significant role in the gut microbiota, where it may contribute to metabolic processes and the overall health of its host. Further investigation into the interactions and functions of this strain within the complex gut ecosystem could unveil important biological implications." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 991919 NZ_CP031920.1 Bac0004440 Helicobacter pylori CPY1662 "Helicobacter pylori CPY1662 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its primary habitat, the human gastrointestinal tract. As a host-associated microbe, H. pylori CPY1662 is adapted to live in the complex environment of the stomach, where it plays a significant role in the microbial community.↵↵Microaerophilic bacteria, such as H. pylori CPY1662, require reduced levels of oxygen for growth, often found in specific niches within the gastric environment. The unique spirilla morphology may confer advantages in motility, allowing the organism to navigate the viscous mucus layer of the stomach lining. ↵↵Understanding the physiological traits of H. pylori CPY1662 can offer insights into its survival strategies and interactions within the host. Its ability to inhabit a microaerobic niche highlights the intricate balance of microbial life in the human gastrointestinal ecosystem, where such organisms can influence local pH levels and nutrient availability, potentially affecting overall gut health. Further research into its ecological roles may reveal additional implications for host-microbe interactions in the context of gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992015 AOTT00000000.1 Bac0004441 Helicobacter pylori CPY1962 "Helicobacter pylori CPY1962 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This organism typically thrives at an optimal temperature of 37.0 °C, aligning with the physiological conditions found within its host-associated habitat. ↵↵H. pylori is known for its unique adaptation to the acidic environment of the stomach, which allows it to colonize gastric epithelial tissues effectively. The microaerophilic nature of this bacterium indicates that it requires reduced levels of oxygen for optimal growth, a characteristic that is crucial for its survival in the tightly regulated conditions of the gastric niche. ↵↵The specific traits of CPY1962 suggest a specialized role within the microbiome of the host, potentially influencing local pH levels and the overall microbial community structure. Understanding the environmental and physiological preferences of H. pylori CPY1962 may provide insights into its interactions with the host's immune system and its adaptation strategies in highly competitive environments. This highlights the importance of studying strain-specific traits to further comprehend the ecological dynamics of Helicobacter species within their respective hosts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992016 AKNL00000000.1 Bac0004442 Helicobacter pylori CPY3281 "Helicobacter pylori CPY3281 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, aligning with the typical temperature of the human gastric environment, which suggests a specialized adaptation to its host-associated habitat. ↵↵The microaerophilic nature of H. pylori CPY3281 indicates that it requires reduced oxygen levels for growth, which is consistent with its colonization of the gastric mucosa, where oxygen concentration is lower than in the atmosphere. This adaptation not only supports its survival in the stomach but also contributes to its ability to persist in a challenging ecological niche dominated by acidic conditions.↵↵The unique morphological and physiological traits of H. pylori CPY3281 highlight its potential for intricate interactions with the host's immune system and gastric physiology. Understanding these characteristics can provide insights into the ecological dynamics of this bacterium within the human microbiome, particularly in relation to its role in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992017 AKNM00000000.1 Bac0004443 Helicobacter pylori CPY6311 "Helicobacter pylori CPY6311 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives at an optimal temperature of 37.0°C, which coincides with the typical mammalian body temperature, suggesting its adaptation to a host-associated habitat. ↵↵H. pylori is predominantly found in the gastric mucosa of various hosts, where it is thought to play a significant role in the microbial ecology of the stomach. Its microaerophilic nature indicates that it requires lower levels of oxygen for growth than what is typically present in the atmosphere, which aligns with its niche in the oxygen-restricted environment of the gastric mucosa. ↵↵The unique morphology and growth requirements of H. pylori CPY6311 may influence its interactions within the host's microbiome, potentially affecting gastric health and disease states. Understanding these traits can provide insights into the ecological dynamics of the gastric environment and the potential roles of H. pylori in maintaining or disrupting microbial balance." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992022 AKNQ00000000.1 Bac0004444 Helicobacter pylori NQ4228 "Helicobacter pylori NQ4228 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives at an optimal temperature of 37.0°C, reflecting its adaptation to host environments. H. pylori is predominantly found in association with hosts, suggesting a specialized niche that likely influences its metabolic and ecological behaviors.↵↵The microaerophilic nature of H. pylori NQ4228 indicates its requirement for reduced oxygen levels, which aligns with its natural habitat in the gastric mucosa of various hosts. This adaptation may facilitate its survival and colonization in the acidic environment of the stomach, where oxygen levels are typically lower than atmospheric concentrations.↵↵Understanding the traits of H. pylori NQ4228 contributes to our broader knowledge of microbial life in host-associated environments, particularly in terms of how such organisms adapt to specific conditions, such as temperature and oxygen availability. The unique combination of its Gram-negative status, spirilla morphology, and microaerophilic requirements underscores the intricate relationships that bacteria like H. pylori maintain within their ecological niches, potentially influencing gastric health and disease dynamics in their hosts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992025 AKNT00000000.1 Bac0004445 Helicobacter pylori NQ4099 "Helicobacter pylori NQ4099 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This species thrives at an optimal temperature of 37.0°C, which aligns with its typical habitat as a host-associated organism, often residing in the gastric mucosa of mammals, particularly humans. ↵↵Helicobacter pylori plays a significant role in the gastric microbiome, where it may influence local pH levels and contribute to the overall microbial community dynamics. Its microaerophilic nature suggests that it requires reduced oxygen levels for optimal growth, which is consistent with the oxygen gradients present in the stomach environment. ↵↵The solitary arrangement of H. pylori cells may facilitate individual adaptation to the host's gastric conditions, potentially allowing for specialized interactions with the gastric epithelium. The ability to survive and proliferate in such a challenging environment underscores the organism's unique metabolic adaptations. Understanding the traits of H. pylori NQ4099 can provide insights into its ecological role within the host and its interactions with other microbial inhabitants of the gastric niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992026 AKNU00000000.1 Bac0004446 Helicobacter pylori NQ4076 "Helicobacter pylori NQ4076 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0 °C, which corresponds to the typical internal temperature of warm-blooded hosts. H. pylori NQ4076 is specifically adapted to a host-associated habitat, indicating a close relationship with its host environment, which is essential for its survival and potential functionality within that niche.↵↵The microaerophilic nature of H. pylori NQ4076 suggests that it requires reduced levels of oxygen for growth, which is a common trait among bacteria residing in the gastrointestinal tract, where oxygen levels are often lower than atmospheric conditions. This adaptation allows H. pylori NQ4076 to inhabit the stomach lining, where it may play a role in the complex dynamics of microbial communities and host interactions.↵↵Interestingly, the solitary arrangement of H. pylori NQ4076 may facilitate its motility and ability to navigate the viscous gastric environment, which could enhance its competitive fitness among other microbial inhabitants. Understanding the specific traits of H. pylori NQ4076 contributes to a broader comprehension of how such microbes adapt to their niche and the implications for host health and microbiome diversity." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992029 AKNX00000000.1 Bac0004447 Helicobacter pylori Hp A-4 "Helicobacter pylori strain Hp A-4 is a Gram-negative microbe characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, mirroring the physiological conditions of its host, which suggests its adaptation to a warm-blooded environment. As a microaerophilic bacterium, Hp A-4 requires reduced oxygen levels for its metabolic processes, which aligns with its habitat as a host-associated microbe, typically residing in the gastric mucosa of mammals. ↵↵The unique morphology and oxygen requirements of Hp A-4 may facilitate its survival in the highly acidic environment of the stomach, where it can evade the host's immune response and contribute to its ecological niche. Understanding these traits provides insights into the adaptations of Helicobacter pylori in establishing itself within the gastrointestinal tract, where it plays a role in the complex interactions with the host's microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992032 AKOA00000000.1 Bac0004448 Helicobacter pylori Hp A-11 "Helicobacter pylori strain Hp A-11 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism optimally thrives at a temperature of 37.0°C, which corresponds to the physiological temperature of its host, suggesting a specialized adaptation to life within a host-associated environment. ↵↵H. pylori is known for its unique habitat, primarily colonizing the gastric mucosa of humans, where it can influence gastric health and disease states. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which aligns with its ecological niche within the gastric environment, where oxygen concentration is lower than in the atmosphere. ↵↵Understanding the specific traits of H. pylori Hp A-11 can provide insights into its metabolic pathways and potential interactions within the host’s gastrointestinal tract. The organism's adaptation to a microaerophilic environment and its spirilla morphology may play roles in motility and colonization dynamics, further influencing its ecological niche within the host. This highlights the intricate relationship between microbial traits and host-specific habitats, which can be pivotal in understanding the role of H. pylori in human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992035 AOTW00000000.1 Bac0004449 Helicobacter pylori Hp A-17 "Helicobacter pylori Hp A-17 is a Gram-negative microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at 37.0°C, which corresponds to the typical human body temperature, suggesting its adaptation to a host-associated habitat. As a member of the Helicobacter genus, Hp A-17 is likely to inhabit the gastric environment, where it may contribute to the complex microbial community of the host. ↵↵The microaerophilic nature of Hp A-17 indicates that it requires lower levels of oxygen for growth compared to atmospheric conditions, which aligns with its lifestyle in the anaerobic conditions of the stomach. This adaptation may confer advantages in surviving and proliferating in the gastric niche, where oxygen concentration is reduced compared to other environments.↵↵Understanding the traits of Helicobacter pylori Hp A-17, particularly its optimal growth conditions and microaerophilic requirement, provides insight into its potential interactions within the gastric microbiome. The adaptation to host-associated habitats highlights the intricate relationships that microbes like Hp A-17 can form with their hosts, potentially influencing the overall health and disease states of the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992036 AKOD00000000.1 Bac0004450 Helicobacter pylori Hp A-20 "Helicobacter pylori Hp A-20 is a Gram-negative bacterium characterized by its spirilla shape and occurrence as single cells. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of its human hosts. H. pylori Hp A-20 is microaerophilic, indicating that it requires a reduced level of oxygen for growth, which is consistent with its ecological niche in the gastric environment, where oxygen levels are lower than in the atmosphere.↵↵As a host-associated organism, H. pylori Hp A-20 is commonly found in the stomachs of humans, where it may establish a complex relationship with its host. The microbe's unique adaptation to the acidic gastric environment may allow it to play a role in the local microbiome, potentially influencing gastric physiology and immune responses. Understanding the specific traits of H. pylori Hp A-20 is essential for further research into its ecological interactions and potential implications for human health. The adaptation of this strain to a microaerophilic habitat highlights the intricate balance between microbial life and host conditions, revealing the importance of environmental oxygen levels in shaping microbial communities within the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992037 AKOE00000000.1 Bac0004451 Helicobacter pylori Hp H-16 "Helicobacter pylori Hp H-16 is a Gram-negative bacterium characterized by its spiral shape (spirilla) and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to the human gastric environment, where it is primarily found. H. pylori Hp H-16 is classified as microaerophilic, indicating that it requires a reduced level of oxygen for growth, a feature that allows it to inhabit the acidic conditions of the stomach while avoiding complete exposure to atmospheric oxygen.↵↵As a host-associated organism, H. pylori Hp H-16 plays a significant role in the microbiota of the gastric niche, where it can influence local pH levels and interact with the host's immune response. The unique combination of its morphology, growth conditions, and habitat suggests that H. pylori Hp H-16 has evolved specialized adaptations for survival and proliferation in the challenging gastric environment, highlighting the intricate relationships between microbial life and host physiology. Understanding these traits can provide insights into the broader implications of H. pylori in human health and disease, particularly in relation to its ecological role within the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992038 AKOF00000000.1 Bac0004452 Helicobacter pylori Hp H-30 "Helicobacter pylori Hp H-30 is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and presence in single cell arrangements. This strain optimally thrives at 37.0°C, aligning with the human body temperature, which suggests its adaptation to a host-associated habitat. H. pylori is primarily found in the gastric mucosa of humans, where it utilizes its unique morphology and metabolic requirements to colonize and survive in the acidic environment of the stomach.↵↵The microaerophilic nature of H. pylori indicates that it requires lower levels of oxygen for growth compared to atmospheric conditions, which may facilitate its survival in the highly oxidative gastric environment. The spiral shape of the bacterium may also confer motility advantages, allowing it to navigate through the viscous gastric mucus layer and adhere to epithelial cells.↵↵Understanding the specific adaptations of H. pylori Hp H-30 within its host-associated habitat can provide valuable insights into the mechanisms of microbial survival and colonization in extreme conditions. This adaptability underscores the complex interplay between host physiology and microbial ecology, highlighting the evolutionary strategies employed by bacteria like H. pylori to persist in challenging environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992043 AKOK00000000.1 Bac0004453 Helicobacter pylori Hp H-36 "Helicobacter pylori Hp H-36 is a Gram-negative bacterium characterized by its spirilla shape and presence as single cells. This microbe demonstrates a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels, which is consistent with its association with host organisms. The optimal growth temperature for H. pylori Hp H-36 is approximately 37.0°C, aligning with the typical body temperature of its human hosts.↵↵As a member of the Helicobacter genus, H. pylori Hp H-36 is primarily found in the gastric mucosa of mammals, illustrating its adaptation to a host-associated habitat. The unique combination of its microaerophilic nature and optimal temperature suggests a specialized niche within the gastric environment, where it can evade the immune response and survive the acidic conditions of the stomach.↵↵The isolation of H. pylori Hp H-36 highlights the potential for diverse adaptations among strains of this species, particularly in relation to their survival mechanisms in host-associated environments. Understanding these traits offers insights into the ecological dynamics of H. pylori in the human microbiome and its interactions with gastric physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992044 AKOL00000000.1 Bac0004454 Helicobacter pylori Hp H-42 "Helicobacter pylori Hp H-42 is a Gram-negative, spiral-shaped bacterium characterized by its unique microaerophilic oxygen requirements and its association with host environments. This organism typically appears as single cells rather than in clusters or chains, which is indicative of its individualistic lifestyle within the host. Optimal growth conditions for H. pylori Hp H-42 are found at 37.0°C, aligning with the average human body temperature, suggesting a strong adaptation to the gastric environment of its hosts.↵↵This microbe is often found within the gastric mucosa, where it can thrive in the moderately low-oxygen conditions prevalent in this niche. The microaerophilic nature of H. pylori Hp H-42 allows it to survive in the stomach's harsh acidic environment while relying on reduced oxygen levels for metabolic processes. ↵↵Understanding the specific habitat and physiological traits of Helicobacter pylori Hp H-42 contributes to the broader knowledge of microbial survival strategies in host-associated environments. Its adaptation to the human stomach illustrates the complex interactions between microbes and their host, particularly in how these organisms navigate and exploit specific ecological niches for survival. This adaptability may also provide insights into the evolutionary pressures faced by gastric microbes in fluctuating environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992047 AKON00000000.1 Bac0004455 Helicobacter pylori Hp A-6 "Helicobacter pylori Hp A-6 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found within the gastrointestinal tract of its mammalian hosts. As a host-associated microbe, H. pylori Hp A-6 occupies a niche that is specifically adapted to the gastric environment, utilizing its unique morphology and metabolic capabilities to survive in low-oxygen conditions.↵↵The microaerophilic nature of H. pylori Hp A-6 indicates that it requires a limited amount of oxygen for growth, reflecting its adaptation to the oxygen-poor regions of the stomach lining where it resides. This adaptation is crucial for its survival and potential interactions with the host's immune system and microbiota. Understanding the environmental preferences of H. pylori Hp A-6 not only provides insights into its physiological characteristics but also highlights the intricate relationships that exist between host-associated microbes and their environments. The ability of H. pylori to colonize the gastric epithelium suggests a complex evolutionary interplay, potentially influencing gastric health and disease dynamics in the host organism." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992052 AKOR00000000.1 Bac0004456 Helicobacter pylori Hp A-14 "Helicobacter pylori Hp A-14 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the gastric environment of its host. ↵↵As a member of the Helicobacter genus, H. pylori is primarily associated with the gastric mucosa of humans and other mammals, indicating a specialized adaptation to host-associated habitats. The microaerophilic nature of H. pylori suggests that it requires reduced oxygen levels for optimal growth, reflecting its adaptation to the low-oxygen environment of the stomach.↵↵The specific traits of H. pylori Hp A-14 may provide insights into its survival strategies in the highly acidic gastric environment, where it can influence gastric health and disease dynamics. Understanding the physiological and ecological characteristics of this strain could enhance knowledge of its interactions with the host's immune system and the potential role it plays in the gastric microbiome. Further investigation into the unique adaptations of H. pylori strains like Hp A-14 may reveal important aspects of microbial life in host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992054 AKOT00000000.1 Bac0004457 Helicobacter pylori Hp A-26 "Helicobacter pylori strain Hp A-26 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is adapted to a host-associated habitat, where it thrives in the microaerophilic conditions prevalent in the gastric environment of its host. Optimal growth occurs at a temperature of 37.0 °C, aligning with the physiological temperature of the human body.↵↵As a member of the Helicobacter genus, Hp A-26 is notable for its ability to survive in the acidic gastric milieu, suggesting specialized adaptations that allow it to maintain viability and possibly interact with host tissues. The microaerophilic nature of this bacterium indicates its reliance on reduced oxygen concentrations, which is consistent with its ecological niche in the stomach where oxygen levels are lower than in the external environment.↵↵Understanding the specific adaptations of Hp A-26 may provide insights into its role in the gastric microbiome and its potential interactions with other microbial communities present in the gastrointestinal tract. This highlights the importance of investigating such strains to better comprehend their ecological dynamics and contributions to host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992056 AKOV00000000.1 Bac0004458 Helicobacter pylori Hp H-3 "Helicobacter pylori Hp H-3 is a Gram-negative bacterium characterized by its spirilla shape and arrangement as single cells. This microbe exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels. Its optimal growth temperature is approximately 37.0°C, which aligns well with the physiological conditions found within the human stomach, its primary habitat.↵↵As a host-associated organism, H. pylori is primarily found in the gastric mucosa of humans, where it plays a role in a complex ecological relationship with the host. The microbe's adaptation to the acidic environment of the stomach is facilitated by its unique morphology and metabolic capabilities, allowing it to colonize this challenging habitat effectively. ↵↵Research suggests that H. pylori may contribute to the microbial diversity within the gastric ecosystem, interacting with other microbial species and the host's immune response. This interaction could influence not only the bacterium's survival and proliferation but also the overall health of the host's gastric environment. The presence of H. pylori in the human stomach highlights its potential role in shaping the gastric microbiome, which could have implications for understanding gastrointestinal health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992059 AKOX00000000.1 Bac0004459 Helicobacter pylori Hp H-34 "Helicobacter pylori Hp H-34 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and singular cell arrangement. This organism thrives optimally at a temperature of 37.0 °C, which aligns with its adaptation to the human gastric environment, where it is predominantly found as a host-associated microbe.↵↵As a member of the genus Helicobacter, H. pylori is known for its unique motility and ability to colonize the acidic conditions of the stomach, an adaptation that is crucial for its survival and persistence in such a hostile environment. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with the low-oxygen microenvironment within the gastric mucosa.↵↵The ecological role of H. pylori extends beyond mere colonization; it interacts with the host’s immune system and may influence gastric health and disease states. Understanding the exact mechanisms of these interactions is critical for elucidating the bacterium's role in human health and disease. Research suggests that H. pylori may also be involved in shaping the gastric microbiome, potentially affecting the overall microbial diversity and functionality in the human stomach. This insight underscores the importance of H. pylori not only as a pathogen but also as a key player in the complex ecology of the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992069 AKPH00000000.1 Bac0004460 Helicobacter pylori Hp P-8 "Helicobacter pylori Hp P-8 is a Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This microbe is microaerophilic, thriving in environments with reduced oxygen levels, which aligns with its typical habitat associated with the host. Optimal growth occurs at 37.0°C, a temperature that corresponds with the physiological conditions of the human gastric environment, where H. pylori is predominantly found.↵↵As a member of the Helicobacter genus, Hp P-8’s morphological traits and growth requirements suggest an adaptation to the acidic and low-oxygen conditions of the stomach. Its spiral shape may facilitate motility, allowing it to navigate the viscous mucus layer that protects the gastric epithelium. This unique morphology, combined with its microaerophilic nature, likely plays a critical role in its survival and potential interactions within the gastric niche.↵↵Understanding the traits of Helicobacter pylori Hp P-8 enhances our insight into the functional dynamics of gastric microbiota, particularly in relation to host-microbe interactions. The specific adaptations of this strain may contribute to its ecological role in the gastric environment, influencing both microbial community structure and host health. Further research into these relationships could reveal important implications for gastrointestinal health and disease management." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992077 AKPM00000000.1 Bac0004461 Helicobacter pylori Hp P-13 "Helicobacter pylori Hp P-13 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives at an optimal temperature of 37.0°C, indicating its adaptation to a host-associated habitat, which is typical for members of the Helicobacter genus. ↵↵H. pylori is known for colonizing the gastric mucosa of a variety of hosts, where it can play a significant role in the complex interactions within the gastrointestinal microbiome. The microaerophilic nature of H. pylori suggests that it requires low levels of oxygen for growth, a condition that is often found in the gastric environment. ↵↵The ability of H. pylori to survive and proliferate in the acidic conditions of the stomach, combined with its unique morphological features, enables it to establish a niche that may influence host digestive processes and immune responses. Understanding the traits of H. pylori Hp P-13 may provide valuable insights into its role in host-associated ecosystems, as well as its potential interactions with other microbial communities within the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992079 AKPO00000000.1 Bac0004462 Helicobacter pylori Hp P-25 "Helicobacter pylori Hp P-25 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host. As a host-associated microbe, H. pylori is predominantly found in the gastric environment of humans, where it plays a complex role in gastrointestinal health.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with its adaptation to the gastric niche, where local oxygen concentrations are lower than in the atmosphere. This adaptation allows H. pylori to maintain its metabolic processes within the hostile environment of the stomach, where it can interact with gastric epithelial cells and the host immune response.↵↵An intriguing aspect of Helicobacter pylori Hp P-25 is its potential role in influencing the gastric microbiome. By occupying a distinct niche within the stomach, it may affect the overall microbial diversity and function of the gastric ecosystem, thereby influencing various physiological processes in the host. Further studies are warranted to elucidate the specific interactions between H. pylori and other microbial communities in the gastrointestinal tract, as well as its implications for host health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992084 AKPS00000000.1 Bac0004463 Helicobacter pylori Hp P-74 "Helicobacter pylori strain Hp P-74 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This organism optimally thrives at a temperature of 37.0°C, indicating its adaptation to the human gastric environment, where it is typically found associated with host tissues. ↵↵As a member of the Helicobacter genus, Hp P-74 is notable for its unique morphological and physiological traits that enable it to colonize the acidic milieu of the stomach. Its microaerophilic nature suggests a reliance on reduced oxygen levels for growth, which is consistent with the oxygen-limited conditions of the gastric niche. ↵↵The adaptation of Hp P-74 to its host-associated habitat may provide insights into its metabolic capabilities and survival strategies in the harsh gastric environment. Understanding its specific traits can inform further research into the ecological roles of H. pylori strains within human health and disease contexts. The ability of Hp P-74 to persist in such a hostile environment highlights the complex interplay between host physiology and microbial adaptation, potentially influencing gastric microbiome dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992091 AKPX00000000.1 Bac0004464 Helicobacter pylori Hp P-1b "Helicobacter pylori Hp P-1b is a Gram-negative bacterium characterized by its spirilla shape and presence as single cells, adapting to a microaerophilic environment. This microbe thrives optimally at 37.0°C, which aligns with its habitat as a host-associated organism, often residing in the gastric mucosa of its host.↵↵The microaerophilic nature of H. pylori suggests that it requires lower levels of oxygen for growth than are present in the atmosphere, which is consistent with its adaptation to the human stomach, a niche that provides a unique microenvironment. The Gram-negative cell wall structure may contribute to its ability to survive in this acidic habitat, as it can help to protect against harsh conditions and facilitate colonization.↵↵Understanding the specific traits of Helicobacter pylori Hp P-1b enhances our knowledge of its ecological role within the host environment, particularly regarding its interactions with the gastric microbiome. Its ability to maintain a single-cell arrangement may confer advantages in nutrient acquisition and adaptability to host defenses, highlighting the intricate relationships between host-associated microbes and their environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992098 AKQA00000000.1 Bac0004465 Helicobacter pylori Hp P-11b "Helicobacter pylori Hp P-11b is a Gram-negative bacterium characterized by its spirilla shape and arrangement as single cells. This microbe thrives under microaerophilic conditions, indicating its requirement for reduced oxygen levels, typically found in specific niches within host environments. Optimal growth occurs at a temperature of 37°C, which aligns with the physiological conditions of its host organisms.↵↵As a member of the Helicobacter genus, Hp P-11b is predominantly associated with the gastric mucosa of various hosts, suggesting a specialized adaptation to this environment. Its microaerophilic nature may provide competitive advantages in the complex microbial ecosystems of the gastrointestinal tract, where oxygen concentrations are limited. ↵↵The unique feature of Hp P-11b being host-associated emphasizes its potential role in the dynamics of host-microbe interactions, potentially influencing host health and disease states. Further investigation into its specific ecological functions and interactions within the host could shed light on the broader implications of Helicobacter species in maintaining gastric homeostasis or contributing to gastrointestinal pathologies. Understanding such interactions is essential for elucidating the complex relationships between host organisms and their resident microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992106 AKQH00000000.1 Bac0004466 Helicobacter pylori Hp P-15b "Helicobacter pylori strain Hp P-15b is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated habitats, such as the human gastric mucosa. ↵↵H. pylori is known for its unique motility and ability to colonize the acidic environment of the stomach, where it can influence local microbiota and contribute to various gastrointestinal conditions. The microaerophilic nature of H. pylori indicates that it requires a reduced level of oxygen for growth, which is consistent with its ecological niche in the host’s stomach, where oxygen levels are lower than atmospheric conditions.↵↵Understanding the traits of H. pylori Hp P-15b can provide insights into its role within the human microbiome, particularly in how it interacts with host immune responses and other microbial populations. The ability of this strain to survive and proliferate in such a specialized environment highlights the intricate relationships that exist between host-associated microbes and their environments, suggesting potential avenues for further research into microbial adaptation and host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992108 AKQJ00000000.1 Bac0004467 Helicobacter pylori Hp M3 "Helicobacter pylori strain Hp M3 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism optimally thrives at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe. H. pylori is well-known for its association with the gastric environment of humans and other mammals, where it resides in the epithelial lining of the stomach.↵↵The microaerophilic nature of H. pylori suggests a specific adaptation to low-oxygen environments, which is critical for its survival and metabolic processes within the gastrointestinal tract. The spiral morphology may play a role in facilitating motility through viscous environments, allowing the bacterium to navigate the gastric mucus layer effectively.↵↵Research into H. pylori has primarily focused on its role in gastric health and disease; however, understanding its ecological niche can provide insights into its interactions within the host microbiome. The presence of H. pylori in the stomach may influence not only local gastric conditions but also broader systemic host responses, highlighting its potential role in shaping the microbiome diversity and function within the gastrointestinal tract. Thus, the study of H. pylori Hp M3 may contribute to a deeper understanding of host-microbe interactions and their implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992119 AKQP00000000.1 Bac0004468 Microbacterium enclense Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium enclense 993073 RBZY00000000.1 Bac0004469 Naumannella halotolerans str. DSM 24323 "Naumannella halotolerans str. DSM 24323 is a Gram-positive, spherical bacterium characterized by its aerobic to microaerophilic growth requirements and non-spore-forming nature. This microorganism exhibits a distinct morphological shape that can be associated with its ecological adaptability. As a halotolerant species, N. halotolerans is capable of surviving in environments with elevated salt concentrations, which suggests a potential role in saline habitats. ↵↵The organism's Gram-positive status indicates a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in challenging environmental conditions. Its aerobic and microaerophilic oxygen requirements suggest that while it can thrive in the presence of oxygen, it may also possess adaptations that allow it to tolerate lower oxygen levels. ↵↵The ability of N. halotolerans to withstand high salinity while maintaining its aerobic metabolic processes positions it as a potential candidate for studying microbial life in extreme environments, such as saline lakes or salt flats. This adaptability underscores the significance of understanding microbial diversity in relation to environmental stressors, offering insights into microbial resilience and potential applications in biotechnology or bioremediation in saline conditions." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Naumannella Naumannella halotolerans Gram-positive sphere non-motile aerobic / microaerophile non-spore-forming 993414 SOAW00000000.1 Bac0004470 Pseudomonas brassicacearum subsp. brassicacearum NFM421 (NCBI BioProject: PRJNA66303) Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas brassicacearum brassicacearum NFM421 Negative Root nodule 994484 NC_015379.1 Bac0004471 Youngiibacter fragilis 232.1 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Youngiibacter Youngiibacter fragilis anaerobic 994573 AXUN00000000.2 Bac0004472 Mycetocola miduiensis "Mycetocola miduiensis is a Gram-positive, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. This microorganism contributes to the diversity of microbial life and may play a role in various ecological niches where aerobic conditions prevail. ↵↵The Gram-positive nature of Mycetocola miduiensis suggests a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection in its environment. As a rod-shaped organism, it may exhibit various arrangements depending on its growth conditions, potentially influencing its interactions with other microorganisms and its surrounding environment.↵↵The preference for aerobic conditions indicates that Mycetocola miduiensis relies on oxygen for its metabolic processes, which may be critical for its survival in specific habitats. Its optimal growth temperature of 25.0°C aligns with mesophilic bacteria, suggesting that it could inhabit temperate climates or environments with moderate thermal conditions.↵↵A unique aspect of Mycetocola miduiensis lies in its potential interactions within microbial communities, where it may contribute to nutrient cycling or participate in symbiotic relationships, emphasizing the ecological significance of understanding its traits and behaviors in natural environments." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola miduiensis Gram-positive rod aerobic 25 mesophilic non-spore-forming 995034 FOVM00000000.1 Bac0004473 Actinopolyspora lacussalsi subsp. righensis "Actinopolyspora lacussalsi subsp. righensis is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under aerobic conditions, with an optimal growth temperature of 37.0°C. This subspecies is a member of the Actinopolyspora genus, which is known for its filamentous morphology and capacity for producing spores, allowing it to survive in various environmental conditions.↵↵The Gram-positive nature of A. lacussalsi subsp. righensis suggests a robust cell wall structure primarily composed of peptidoglycan, which may confer advantages in resisting certain environmental stresses. As a spore-forming bacterium, it likely possesses mechanisms for sporulation that enable it to endure unfavorable conditions by entering a dormant state. The aerobic requirement indicates that this bacterium relies on oxygen for its metabolic processes, which may influence its ecological niche, particularly in oxygen-rich environments.↵↵With its optimal temperature of 37.0°C, A. lacussalsi subsp. righensis may be well-adapted to habitats that reflect warm terrestrial or aquatic ecosystems, potentially including those that are influenced by human activity or natural thermal gradients. The ability to form spores could provide insights into its resilience in fluctuating environments, suggesting that it may play a role in nutrient cycling or biogeochemical processes in its native habitats. Further research may elucidate its specific ecological functions and interactions within its ecosystem." Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora lacussalsi Gram-positive rod non-motile aerobic 37 mesophilic spore-forming 995060 FPAT00000000.1 Bac0004474 Polaribacter reichenbachii str. KCTC 23969 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter reichenbachii 996801 LSFL00000000.1 Bac0004475 Desmospora sp. 8437 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Desmospora Desmospora sp. 8437 997346 AFHT00000000.1 Bac0004476 Prevotella nigrescens ATCC 33563 "Prevotella nigrescens ATCC 33563 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, categorizing it as an obligate anaerobe. This microbe is part of the larger Prevotella genus, which is primarily known for its role in human oral and gut microbiota. The optimal growth temperature for P. nigrescens is around 37°C, which aligns with the body temperature of warm-blooded hosts, indicating its adaptation to the human environment. As a chemoheterotroph, P. nigrescens obtains its energy and carbon from organic compounds, typically deriving from the breakdown of dietary polysaccharides and proteins in the digestive tract. Prevotella nigrescens inhabits various body sites, predominantly found in the oral cavity and gastrointestinal tract of humans. It can also be present in other mucosal surfaces, demonstrating its ability to colonize diverse environments within the human body. The prevalence of P. nigrescens in the oral microbiome is particularly noteworthy, as it plays a role in maintaining the balance of microbial communities while also being associated with periodontal diseases when dysbiosis occurs. This microorganism is also implicated in various clinical conditions, including abscess formation, respiratory infections, and systemic diseases, underscoring its clinical relevance. Notably, P. nigrescens can contribute to the formation of biofilms, which protect the microbial community from the host immune response and antibiotics, making infections difficult to treat. Consequently, understanding its biology and interactions within the host environment provides insights into its role in health and disease, emphasizing the importance of anaerobic bacteria in human microbiota balance." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella nigrescens Negative Anaerobe 997352 AFPX00000000.1 Bac0004477 Prevotella pallens ATCC 700821 "Prevotella pallens ATCC 700821 is a gram-negative, rod-shaped bacterium that thrives in anaerobic conditions and is categorized as a chemoheterotroph. This microbe predominantly inhabits various body sites, particularly within the human oral cavity, gastrointestinal tract, and urogenital region. Preferring mesophilic temperatures, it optimally grows at around 37°C, which correlates with the average human body temperature, facilitating its survival within the host. Being a gram-negative organism, Prevotella pallens possesses a thin peptidoglycan layer sandwiched between two membranes, giving it a characteristic resistance to certain antibiotics and an ability to evade the immune response. The rod shape of this microbe is adapted for efficient colonization and interaction with its environment, including other microbial communities in the human microbiome. As a chemoheterotroph, it relies on organic compounds as both a carbon source and energy provider, feeding on the complex polysaccharides, proteins, and other metabolites present in its habitat. Prevotella pallens is classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen and its metabolic processes are adapted to an oxygen-free environment. This characteristic further solidifies its role in the human microbiome, where it competes for niches and resources with other microbes.In addition to its ecological role, Prevotella pallens has garnered attention in research due to its associations with various health conditions, including periodontal disease and its potential links to metabolic disorders. Its ability to produce short-chain fatty acids through fermentation underpins its significance in human health, contributing to gut health and immune system modulation." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella pallens Negative Anaerobe 997353 AFPY00000000.1 Bac0004478 Cutibacterium avidum ATCC 25577 "Cutibacterium avidum ATCC 25577 is a rod-shaped, nonsporulating bacterium classified as a chemoheterotroph, capable of utilizing organic compounds for energy. This microorganism is a facultative anaerobe, enabling it to thrive in both aerobic and anaerobic environments. Its versatility in energy metabolism allows it to inhabit a range of ecological niches, which contributes to its presence in diverse habitats.↵↵Cutibacterium avidum is often associated with human skin, where it plays a role in the complex community of skin microbiota. Despite its association with human hosts, its precise ecological role and interactions within these environments warrant further investigation. The ability to adapt to varying oxygen levels may provide insights into its survival strategies in fluctuating conditions, which is particularly relevant in the context of skin health and disease. Overall, the unique combination of its morphological, metabolic, and ecological traits underscores the significance of Cutibacterium avidum ATCC 25577 in understanding microbial dynamics in human-associated environments." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium avidum Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 997355 AGBA00000000.1 Bac0004479 Porphyromonas sp. KLE 1280 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. KLE 1280 997829 JNOS00000000.1 Bac0004480 Phocaeicola dorei CL02T12C06 "Phocaeicola dorei CL02T12C06 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C and is classified as a chemoheterotroph, utilizing organic compounds for energy. This anaerobic microbe demonstrates a versatile habitat preference, suggesting adaptability to various environments. ↵↵As a member of the Phocaeicola genus, P. dorei CL02T12C06 contributes to the complex microbial communities in its diverse habitats. Its anaerobic metabolism indicates a potential role in environments where oxygen is limited, such as the gastrointestinal tracts of various organisms or in sediment layers of aquatic ecosystems. The ability to thrive in multiple habitats may reflect its ecological significance, particularly in nutrient cycling and organic matter decomposition. ↵↵Further studies into the specific roles and interactions of P. dorei CL02T12C06 within its ecosystems could reveal insights into its contributions to microbial diversity and functionality in anaerobic environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 997876 AGXJ00000000.1 Bac0004481 Bacteroides nordii CL02T12C05 "Bacteroides nordii CL02T12C05 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, specifically classified as an obligate anaerobe. This microbe is part of the Bacteroides genus, which is predominantly found within the human gastrointestinal tract, where it plays a crucial role in the breakdown of complex carbohydrates and contributes to gut health. As a Gram-negative organism, Bacteroides nordii CL02T12C05 possesses a thin peptidoglycan layer and an outer membrane rich in lipopolysaccharides, which can influence its interactions with the human immune system. Its rod shape assists in motility, allowing it to navigate through the viscous environment of the intestines. Preferring moderately warm temperatures that align with the human body (around 37°C), this bacterium is well-adapted to the intestinal ecosystem, where it coexists with other microbial species. Bacteroides nordii CL02T12C05 is classified as a chemoheterotroph, meaning it obtains energy by consuming organic compounds, particularly carbohydrates derived from dietary fibers. The presence of this microbe in the gut is essential for fermenting these compounds, producing short-chain fatty acids that are beneficial for host metabolism and colonic health. This microbe is noteworthy not only for its involvement in digestion but also for its potential role in health and disease. Bacteroides species have been implicated in gut homeostasis and may influence conditions such as obesity and inflammatory bowel disease. Furthermore, the relationship between gut microbiota, including Bacteroides nordii CL02T12C05, and the host immune response continues to be an area of extensive research, highlighting the complexity and significance of this microbe within the human microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides nordii Negative Anaerobe 997884 AGXS00000000.1 Bac0004482 Bacteroides salyersiae CL02T12C01 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides salyersiae anaerobic 997887 AGXV00000000.1 Bac0004483 Phocaeicola vulgatus CL09T03C04 "Phocaeicola vulgatus CL09T03C04 is a Gram-positive, rod-shaped bacterium that exists primarily in a single-cell arrangement and is classified as an anaerobe. This species is host-associated, suggesting its ecological role is closely tied to specific host organisms, where it may contribute to or influence the host's microbiome composition. ↵↵The anaerobic nature of P. vulgatus CL09T03C04 indicates that it thrives in environments devoid of oxygen, which is typical for many bacteria residing within host tissues or in the gastrointestinal tract. The single-cell arrangement may reflect its ecological strategy, allowing for efficient nutrient absorption and interaction with the host's immune responses.↵↵The presence of this microbe in host-associated environments may indicate its potential role in digestive processes or in maintaining gut homeostasis. The advantages conferred by its anaerobic metabolism could facilitate survival in nutrient-rich, low-oxygen conditions, which are commonly found in the gastrointestinal tracts of various hosts. Understanding the specific interactions and functions of P. vulgatus CL09T03C04 within its host could provide valuable insights into its contributions to host health and microbial community dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 997891 AGXZ00000000.1 Bac0004484 Bacteroides xylanisolvens CL03T12C04 "Bacteroides xylanisolvens CL03T12C04 is a Gram-negative, strictly anaerobic bacterium characterized by its ability to ferment xylan, a hemicellulose component abundant in plant cell walls. As a member of the Bacteroides genus, this microbe is adapted to thrive in oxygen-deprived environments, commonly found in the gastrointestinal tracts of humans and other animals. ↵↵The anaerobic nature of B. xylanisolvens CL03T12C04 suggests its metabolic pathways are geared towards fermentation processes, allowing it to utilize xylan as a carbon source efficiently. This capability may play a role in the degradation of complex carbohydrates within the gut, contributing to the overall fiber digestion and promoting a balanced intestinal microbiota.↵↵The specific enzymatic mechanisms employed by B. xylanisolvens CL03T12C04 for xylan utilization have not been detailed in this dataset; however, similar species in the Bacteroides genus are known to possess a range of xylanase enzymes that facilitate the breakdown of xylan into simpler sugars. This process not only aids in nutrient acquisition for the bacterium but also provides substrates for other members of the gut microbiome, thereby fostering a symbiotic relationship within the microbial community. ↵↵Understanding the functions of Bacteroides xylanisolvens CL03T12C04 may provide insights into its role in the fermentation of dietary fibers, underscoring its potential contributions to gut health and the overall metabolic processes occurring within the digestive system." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 997892 AGXE00000000.1 Bac0004485 Pseudoalteromonas sp. J010 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. J010 998465 RDBW00000000.1 Bac0004486 Halomonas sp. TD01 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. TD01 999141 AFQW00000000.1 Bac0004487 [Clostridium] clostridioforme 90A7 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis 999407 AGYN00000000.1 Bac0004488 [Clostridium] clostridioforme 90A8 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis 999408 AGYR00000000.1 Bac0004489 [Clostridium] innocuum 2959 "Clostridium innocuum 2959 is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites across different species, including the gastrointestinal tract, respiratory tract, and skin. As an obligate anaerobe, it requires a oxygen-free environment to survive and multiply.The gram-positive characteristic of C. innocuum 2959 is attributed to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the gram staining process, appearing purple under a microscope. Its rod-shaped morphology allows it to maintain a large surface area, enabling efficient exchange of nutrients and waste products. The mesophilic temperature preference of C. innocuum 2959 indicates that it grows best in moderate temperatures, typically between 20-45°C, making it well-suited to inhabit the human body. As a chemoheterotroph, C. innocuum 2959 relies on organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its metabolic processes. Its presence in various body sites suggests a commensal or symbiotic relationship with its hosts, potentially contributing to the balance of the microbiota. The obligate anaerobic nature of C. innocuum 2959 demands a strict absence of oxygen, which is often achieved in deep tissue or intestinal environments. C. innocuum 2959 has been implicated in the production of short-chain fatty acids, which play a crucial role in maintaining the health and integrity of the colonic epithelium, and its unique metabolic capabilities allow it to degrade a wide range of organic pollutants, making it a potential candidate for bioremediation applications." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium [Clostridium] innocuum Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 999413 AGYV00000000.1 Bac0004490 Parabacteroides johnsonii CL02T12C29 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides johnsonii 999419 AGZP00000000.1 Bac0004491 Segatella maculosa OT 289 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella maculosa 999422 AGEK00000000.1 Bac0004492 Selenomonas sp. F0473 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. F0473 999423 AGZT00000000.1 Bac0004493 Streptococcus sp. F0441 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. F0441 999424 AGZY00000000.1 Bac0004494 Streptococcus sp. F0442 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. F0442 999425 AGZZ00000000.1 Bac0004495 Treponema denticola ATCC 35404 "Treponema denticola ATCC 35404 is a Gram-negative, spiral-shaped bacterium classified within the Treponema genus. This microbe is characterized by its single-cell arrangement and is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. Optimal growth conditions for T. denticola ATCC 35404 are found at a temperature of approximately 30.0°C, which suggests a preference for physiological temperatures typically encountered in host organisms.↵↵As a host-associated bacterium, T. denticola ATCC 35404 is often found in the oral cavity of humans, where it is part of the complex microbiota. Its anaerobic nature allows it to inhabit various niches within the oral ecosystem, particularly in areas such as periodontal pockets where oxygen levels are low. The presence of T. denticola in these environments contributes to the dynamic interactions among oral microbial communities, which can influence oral health and disease states.↵↵The unique morphology and physiological traits of T. denticola ATCC 35404 may facilitate its motility and colonization in anaerobic environments, potentially impacting its ecological role within the host-associated microbiome. Understanding the specific interactions and behaviors of this microbe in its natural habitat can provide insights into the complex relationships that govern microbial communities and their contributions to host health." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999430 AGDU00000000.1 Bac0004496 Treponema denticola H1-T "Treponema denticola H1-T is a Gram-negative, spiral-shaped bacterium that typically exists as single cells and is characterized as an anaerobe. This microbe thrives at an optimal temperature of 30.0°C and is associated with host environments. The structural configuration of T. denticola H1-T, with its distinctive spirilla shape, may facilitate its motility and adaptation within anaerobic niches in host tissues.↵↵As an anaerobe, T. denticola H1-T's metabolic processes likely rely on fermentation or other anaerobic pathways, allowing it to inhabit environments devoid of oxygen. This trait is significant as it suggests that T. denticola H1-T may play a specific role in the microbial communities associated with host organisms, particularly in environments such as the oral cavity where oxygen levels can be low.↵↵The ecological implications of T. denticola H1-T's anaerobic lifestyle and host-associated habitat suggest that it may be involved in complex interactions with other microbial species, contributing to the overall dynamics of the microbiome in which it resides. Such interactions could influence nutrient cycling, microbial community structure, and potentially the health of the host organism. Further studies may elucidate the specific ecological roles and interactions of T. denticola H1-T in these environments." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999431 AGDW00000000.1 Bac0004497 Treponema denticola H-22 "Treponema denticola H-22 is a Gram-negative, spiral-shaped bacterium characterized by its single-cell arrangement and anaerobic metabolic requirements. This microbe thrives optimally at a temperature of 30°C and is primarily associated with host environments. The structural properties of Treponema denticola H-22, particularly its helically coiled shape, likely contribute to its motility and adaptability within the complex microenvironments of its host.↵↵As an anaerobe, T. denticola H-22 relies on fermentation processes for energy production, which may facilitate its survival in oxygen-limited niches. This organism is found primarily in association with host tissues, indicating its potential role in specific microbiomes, such as those of the oral cavity. The unique morphology and metabolic strategies of T. denticola H-22 suggest that it may play a significant role in the microbial community dynamics of its environment, potentially influencing interactions with other microorganisms and the overall health of the host.↵↵Understanding the behaviors and ecological roles of Treponema denticola H-22 can provide insights into its contributions to host-associated microbiomes, particularly in anaerobic habitats where such spirilla dominate. Further investigation into its ecological interactions may reveal important implications for microbial ecology and health in host-associated environments." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999432 NZ_CM001795.1 Bac0004498 Treponema denticola OTK "Treponema denticola OTK is a Gram-negative, spiral-shaped bacterium that typically exists as single cells. This organism is classified as an anaerobe, thriving in environments devoid of oxygen, which aligns with its habitat preference for host-associated niches. Optimal growth of T. denticola OTK occurs at a temperature of approximately 30.0°C, a condition that may be reflective of its natural environment within the host.↵↵As a member of the genus Treponema, T. denticola OTK shares characteristics with other spirochetes, including a distinctive helical shape and motility, which may facilitate its movement through viscous environments. The association of this microbe with host tissues suggests a specialized adaptation to life in close proximity to host organisms, potentially influencing its physiological traits, such as nutrient acquisition and metabolic activity.↵↵The ecological implications of T. denticola OTK's anaerobic lifestyle highlight the importance of microaerophilic and anaerobic conditions in various biological systems, particularly within the oral cavity where it is often found. This environment may play a critical role in maintaining microbial diversity and stability, as well as influencing host-microbe interactions. Understanding the specific traits of T. denticola OTK informs our knowledge of its potential roles in complex microbial communities and contributes to the broader understanding of spirochete biology." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999434 AGDY00000000.1 Bac0004499 Treponema denticola US-Trep "Treponema denticola US-Trep is a Gram-negative, spiral-shaped bacterium that typically exists as single cells. This organism thrives in anaerobic environments and has an optimal growth temperature of approximately 30.0°C. As a host-associated microbe, T. denticola is often found in the oral cavity, where it may play a role in the complex microbial communities associated with dental health.↵↵The morphological characteristics of T. denticola US-Trep, particularly its spirilla shape, are indicative of its motility and potential interactions within biofilms. These traits suggest that the bacterium possesses a unique adaptation for navigating the microenvironments present in the host's oral ecosystem. Furthermore, its anaerobic nature implies that it may contribute to the metabolic processes occurring in oxygen-limited niches, potentially influencing the overall microbial balance in the oral cavity.↵↵Given the ecological role of Treponema denticola US-Trep in the context of host-associated environments, it is noteworthy that its presence may be reflective of specific interactions with other microbial species, which could impact the health of the host. This highlights the importance of understanding such microorganisms in relation to their ecological niches and the broader implications for oral microbiology." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999440 AGEB00000000.1 Bac0004500 Burkholderia gladioli BSR3 "Together with Burkholderia glumae, B. gladioli is a causal agent in rice sheath rot and rice grain rot. The occurrence of B. gladioli has been wide-spread in many countries and considered as potential pathogens for great damage in rice production. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia gladioli BSR3 Negative environmental; fungi; plants; soil; water 999541 NC_015382.1 Bac0004501 Leisingera methylohalidivorans DSM 14336 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera methylohalidivorans 999552 NC_023136.1 Bac0004502 Sedimentitalea nanhaiensis "Sedimentitalea nanhaiensis is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is part of the diverse microbial community found in marine sediments, which highlights its potential role in biogeochemical processes within its environment. The Gram-negative cell wall structure of S. nanhaiensis is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which is typically associated with various physiological adaptations to environmental stresses.↵↵The preference for aerobic conditions suggests that S. nanhaiensis may play a role in the oxidation of organic compounds, contributing to nutrient cycling in marine ecosystems. The optimal growth temperature of 25.0°C indicates that this bacterium is well adapted to temperate marine environments, where it may interact with other microorganisms and participate in complex ecological interactions.↵↵Given its traits, Sedimentitalea nanhaiensis could be an important player in the degradation of organic matter in marine sediments, potentially influencing sediment composition and the availability of nutrients for other organisms. The ability of this bacterium to thrive in specific temperature and oxygen conditions may provide insights into the microbial dynamics of marine habitats and the adaptations required for survival in such niches." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Sedimentitalea Sedimentitalea nanhaiensis Gram-negative rod aerobic 25 mesophilic 999627 FPAW00000000.1 Bac0004503 Cutibacterium modestum P08 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium modestum 999892 AFAM00000000.1 Bac0004504 Thermosulfurimonas dismutans str. S95 "Thermosulfurimonas dismutans strain S95 is a Gram-negative, ovoid bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This species is notable for its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and reproduction. ↵↵As an anaerobic organism, T. dismutans likely plays a significant role in sulfur cycling within its habitat, potentially contributing to biogeochemical processes in geothermal environments or deep-sea hydrothermal vents where such temperature conditions prevail. The ability to grow optimally at elevated temperatures indicates that T. dismutans may possess unique enzymatic adaptations that allow it to maintain metabolic functions in extreme conditions. ↵↵Understanding the physiology and metabolic pathways of Thermosulfurimonas dismutans str. S95 not only enhances our knowledge of thermophilic microorganisms but may also provide insights into the evolutionary strategies employed by bacteria to inhabit extreme niches. This could further inform studies on microbial ecology, particularly in relation to energy flow and nutrient cycling in anaerobic ecosystems." Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermosulfurimonas Thermosulfurimonas dismutans Gram-negative ovoid anaerobic 45 thermophilic non-spore-forming 999894 LWLG00000000.1 Bac0004505 Peptococcaceae bacterium CEB3 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Peptococcaceae bacterium CEB3 999898 LDXJ00000000.1 Bac0004506 Megasphaera lornae Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera lornae vagina 1000568 ADGP00000000.1 Bac0004507 Megasphaera sp. UPII 135-E Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera sp. UPII 135-E 1000569 AFUG00000000.1 Bac0004508 Streptococcus mitis bv. 2 str. SK95 "Streptococcus mitis bv. 2 str. SK95 is a Gram-positive coccus that typically occurs in pairs or chains. This bacterium is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. As a member of the Streptococcus genus, S. mitis bv. 2 str. SK95 is often found in host-associated habitats, suggesting a close relationship with its host, likely residing in the oral cavity or other mucosal surfaces.↵↵The arrangement of these cocci in pairs or chains is characteristic of the genus Streptococcus and is an important trait for identifying and differentiating it from other bacterial taxa. The facultative anaerobic nature of S. mitis bv. 2 str. SK95 allows it to adapt to varying oxygen levels, which is advantageous for survival in diverse environments within the host. ↵↵Understanding the ecological role of S. mitis bv. 2 str. SK95 may provide insights into its contribution to the microbial community in the host. This strain likely plays a role in maintaining oral health, influencing the balance of microbial populations, and potentially interacting with other species in the host microbiome. The adaptability of S. mitis bv. 2 str. SK95 to different oxygen conditions further underscores its potential significance in dynamic host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1000588 AFUB00000000.1 Bac0004509 Levilactobacillus brevis KB290 "Levilactobacillus brevis KB290 is a Gram-positive, rod-shaped bacterium that typically exhibits a cellular arrangement in chains or as singles. This species is classified as a facultative anaerobe, indicating its ability to thrive in both the presence and absence of oxygen. Its optimal growth temperature is around 25.0°C, suggesting a preference for moderate environmental conditions.↵↵L. brevis KB290 has been isolated from various habitats, which underscores its versatility and adaptability to different ecological niches. This adaptability may contribute to its potential applications in fermentation processes, where it could play a role in the production of various food products. Its ability to survive and grow in diverse environments reflects its ecological significance and potential utility in biotechnology.↵↵Overall, the traits of L. brevis KB290 suggest it is well-suited for environments where temperature and oxygen levels fluctuate, and it may interact with a range of microbial communities, thereby influencing fermentation dynamics and nutrient cycling in its habitats." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1001583 NC_020823.1 Bac0004510 Leptospira interrogans str. 2006001854 "Leptospira interrogans strain 2006001854 is a Gram-negative, spiral-shaped bacterium classified within the genus Leptospira. This organism exhibits a helical morphology typical of the spirilla and is known to thrive in an aerobic environment, indicating its requirement for oxygen for metabolic processes. Optimal growth of this strain occurs at a temperature of 28.0°C, suggesting a preference for mild environmental conditions, which may reflect its adaptation to specific host-associated habitats. ↵↵As a member of the Leptospira genus, this strain is part of a group of bacteria that are often associated with water sources and can inhabit various animal hosts, although specific host preferences for strain 2006001854 are not detailed. The host-associated habitat underscores the organism's potential interactions within ecological niches that may facilitate transmission and survival in specific environments. ↵↵The ecological significance of Leptospira interrogans strain 2006001854 may be linked to its role in the broader context of microbial communities, particularly in aquatic systems where it can persist in association with hosts. This adaptability and aerobic requirement may play a crucial role in nutrient cycling within these environments, highlighting the importance of understanding such microbes in ecological studies." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1001590 AFLW00000000.2 Bac0004511 Leptospira interrogans serovar Copenhageni str. LT2050 "Leptospira interrogans serovar Copenhageni str. LT2050 is a Gram-negative, spiral-shaped bacterium that thrives in aerobic conditions and is optimally adapted to a temperature of 28.0 °C. This strain is part of the Leptospira genus, which is known for its helical morphology and motility, characteristics that are essential for its survival in host-associated habitats. ↵↵As an aerobe, L. interrogans serovar Copenhageni str. LT2050 requires oxygen for metabolic processes, indicating its potential ecological roles in environments where oxygen is present, such as in the renal systems of various mammalian hosts. The specific habitat associated with this strain suggests a close relationship with its host, which may facilitate its transmission and persistence in specific ecological niches. ↵↵Understanding the traits of L. interrogans serovar Copenhageni str. LT2050 can provide insights into its environmental adaptability and host interactions. Given its optimal temperature and aerobic nature, this strain may occupy specific ecological niches that reflect the conditions found in the renal tubules of its hosts, potentially influencing its epidemiology and the dynamics of leptospirosis transmission. Such knowledge can inform future studies on the environmental factors and host interactions that influence the distribution and survival of this important pathogen." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1001598 AFMD00000000.2 Bac0004512 Vibrio astriarenae Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio astriarenae 1001886 BBMQ00000000.1 Bac0004513 Escherichia coli PCN033 "Escherichia coli PCN033 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both oxygen-rich and oxygen-depleted environments. E. coli PCN033 exhibits optimal growth at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting an adaptation to a host-associated habitat.↵↵The specific ecological niche of E. coli PCN033 is indicative of its potential role in the microbial community of its host, where it may contribute to various metabolic processes. The facultative anaerobic nature of this microbe allows it to exploit diverse environments within the host, potentially playing a role in nutrient acquisition and gut homeostasis. Understanding the traits of E. coli PCN033 can provide insights into the complex interactions between host organisms and their associated microbiota, which are crucial for maintaining overall health and functionality of the host ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1001989 NZ_CP006632.1 Bac0004514 Hafnia alvei ATCC 51873 "Hafnia alvei ATCC 51873 is a Gram-negative, rod-shaped bacterium categorized as a mesophile, thriving optimally at moderate temperatures between 20°C to 45°C. As a chemoheterotroph, it derives energy and carbon from organic compounds, typically engaging in fermentation processes. This microbe is commonly found in a variety of body sites across different species, residing primarily in the intestinal tracts of humans and animals, as well as in environmental niches such as soil and water. The Gram-negative characteristic of Hafnia alvei indicates it has a thin peptidoglycan layer surrounded by an outer membrane, which is composed of lipopolysaccharides. This structure contributes to its ability to evade certain immune responses. The rod shape enhances its mobility and colonization capabilities within various environments, facilitating interactions with other microorganisms and hosts. As a mesophile, Hafnia alvei adapts to the moderate temperatures typical of its native habitats, including the mammalian gut where it plays a role in digestion. Its classification as a chemoheterotroph allows it to utilize diverse organic substrates, such as sugars and amino acids, reflecting its ecological flexibility. Hafnia alvei has been studied for its probiotic potential, with some strains exhibiting beneficial effects on gut health. Moreover, it has garnered attention in clinical microbiology due to its occasional association with opportunistic infections, particularly in immunocompromised individuals. Its resilience and adaptability make it a significant player in microbiome research, emphasizing its role in both health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia alvei Negative Facultative anaerobe 1002364 AGCI00000000.1 Bac0004515 Helicobacter bizzozeronii CCUG 35545 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter bizzozeronii 1002805 CAGP00000000.1 Bac0004516 Solibacillus silvestris StLB046 "Solibacillus silvestris StLB046 is a rod-shaped bacterium that belongs to the genus Solibacillus. This organism exhibits distinct morphological characteristics typical of its genus, contributing to its classification within the broader context of microbial diversity. As a member of the Bacillaceae family, S. silvestris StLB046 is likely to exhibit traits commonly associated with this group, including the potential for forming spores; however, specific details regarding spore formation or its physiological traits are not provided in the available data.↵↵The ecological role of Solibacillus silvestris StLB046 may be significant, as members of the Solibacillus genus are often found in various environments, including soil and plant-associated habitats. Although specific ecological interactions of S. silvestris StLB046 are not detailed, its rod morphology suggests an adaptation to diverse environments, possibly influencing its metabolic versatility and survival strategies.↵↵Given its classification and morphological traits, S. silvestris StLB046 may play a role in nutrient cycling or plant-microbe interactions, contributing to soil health and fertility. Further research will be necessary to elucidate its specific ecological functions and potential applications in biotechnology or agriculture, particularly in understanding its interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Solibacillus Solibacillus silvestris Rod 1002809 NC_018069.1 Bac0004517 Photorhabdus khanii NC19 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus khanii 1004151 AYSJ00000000.1 Bac0004518 Alteromonas macleodii str. 'Balearic Sea AD45' str. Balearic Sea Isolate AD45 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas macleodii 1004787 NC_018680.1 Bac0004519 Gluconacetobacter sp. SXCC-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconacetobacter Gluconacetobacter sp. SXCC-1 1004836 AFCH00000000.1 Bac0004520 Streptococcus suis D12 "Streptococcus suis D12 is a Gram-positive coccal bacterium that typically exhibits a variety of cell arrangements, including chains, pairs, and singles. This microbe thrives optimally at a temperature of 37.0°C, indicating a preference for environments that closely resemble the physiological conditions of its hosts. As a facultative anaerobe, S. suis D12 is capable of surviving in both the presence and absence of oxygen, which may contribute to its adaptability in specialized habitats.↵↵The ecological niche of S. suis D12 remains classified as specialized, suggesting that it may be adapted to specific environmental conditions or associations with particular hosts. This adaptability may facilitate its survival and persistence in environments that are not conducive to many other microbial species. Understanding these traits can provide insights into the bacterium's ecological role and its potential interactions within its habitat, highlighting the importance of temperature and oxygen availability in shaping its biological functions. Further investigation into its specialized habitat may reveal additional information regarding its survival strategies and ecological significance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1004952 NC_017621.1 Bac0004521 Pseudomonas bharatica CSV86 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas bharatica 1005395 AMWJ00000000.2 Bac0004522 Kosakonia oryziphila Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia oryziphila 1005667 FMBC00000000.1 Bac0004523 Streptococcus infantis SK1076 "Streptococcus infantis SK1076 is a Gram-positive, cocci-shaped bacterium characterized as a facultative anaerobe. This means that it can grow in both the presence and absence of oxygen, allowing it to inhabit a variety of environments. The cocci morphology indicates that the cells are spherical, which is typical of many Streptococcus species. ↵↵As a member of the genus Streptococcus, S. infantis SK1076 is likely to engage in fermentative metabolism under anaerobic conditions, utilizing available substrates to generate energy. The facultative anaerobic nature of this microbe suggests an adaptability that may enable it to thrive in diverse ecological niches, including those influenced by fluctuating oxygen levels. ↵↵The ability to grow in different oxygen conditions may also contribute to its interactions with other microorganisms in its habitat, potentially influencing microbial community dynamics. Such adaptability can be significant in environments such as the human microbiome or various ecological systems where oxygen availability can vary. Further research into S. infantis SK1076 could elucidate its specific roles in these environments, particularly regarding its contributions to microbial interactions and ecosystem functioning." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe 1005705 AFNN00000000.1 Bac0004524 Flagellimonas taeanensis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas taeanensis 1005926 FRAT00000000.1 Bac0004525 Tatumella ptyseos ATCC 33301 "Tatumella ptyseos ATCC 33301 is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, categorizing it as a facultative anaerobe and a chemoheterotroph. Primarily isolated from the human oral cavity, Tatumella ptyseos has also been detected in various body sites, including the respiratory tract and gastrointestinal system of both healthy individuals and those with infections. The bacterium's gram-negative nature is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contribute to its pathogenic potential and immune evasion. Its rod shape allows for motility and interaction with its environment, facilitating colonization and survival in diverse ecosystems within the human body. As a mesophilic organism, it prefers moderate temperatures, which aligns well with the typical conditions found in the human host. Tatumella ptyseos is categorized as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. This adaptability enhances its survival, allowing it to thrive in various niches within the host. As a chemoheterotroph, it derives energy from organic compounds, which supports its growth in nutrient-rich environments like the oral cavity and intestines. The microbe is often associated with opportunistic infections, particularly in immunocompromised patients. It has been linked to endocarditis, respiratory infections, and other clinical conditions, highlighting the importance of understanding its pathogenic mechanisms. Notably, Tatumella ptyseos can coexist with other oral bacteria, contributing to the complex microbiota of the human mouth, which plays a crucial role in overall health. Its ability to adapt and thrive in diverse environments makes it a significant subject of study in microbiology and infectious disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Tatumella ptyseos Negative Facultative anaerobe 1005995 JMPR00000000.1 Bac0004526 Buttiauxella agrestis ATCC 33320 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella agrestis 1006004 JMPI00000000.1 Bac0004527 Metallosphaera cuprina Ar-4 "This strain is new species of the genus Metallosphaera that was isolated from the muddy water of a sulfuric hot spring in Yunnan province, China. (NCBI BioProject: bp_list[1])" Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera cuprina Ar-4 Cocci Yes Facultative Chemolithoautotroph Thermophilic Fresh water- Hot spring Free living 1006006 NC_015435.1 Bac0004528 Listeria weihenstephanensis str. WS 4560 ( = DSM 24698) "Listeria weihenstephanensis str. WS 4560 (= DSM 24698) is a Gram-positive, rod-shaped bacterium that exhibits anaerobic growth and is classified as non-spore-forming. This organism demonstrates optimal growth at a temperature of 32.0°C, suggesting a preference for mesophilic environments, which may be relevant for its survival and proliferation in various ecological niches.↵↵As a member of the Listeria genus, L. weihenstephanensis is of particular interest due to its physiological and biochemical characteristics that differentiate it from closely related species. The absence of sporulation indicates that this strain may rely on other survival strategies to endure unfavorable conditions, such as forming biofilms or utilizing alternative metabolic pathways suited for anaerobic environments.↵↵The ability of L. weihenstephanensis to thrive under anaerobic conditions could provide insights into its potential roles in specific ecological contexts, including the breakdown of organic materials in low-oxygen environments. This trait may facilitate its involvement in nutrient cycling within anaerobic ecosystems, such as sediments or the gastrointestinal tracts of various hosts. Understanding these characteristics can aid in further investigations into the ecological significance and metabolic capabilities of this bacterium within its natural habitats." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Paenilisteria Paenilisteria weihenstephanensis Gram-positive rod anaerobic 32 mesophilic non-spore-forming 1006155 NZ_CP011102.1 Bac0004529 Aeromonas cavernicola str. MDC 2508 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas cavernicola 1006623 PGGC00000000.1 Bac0004530 Pseudomonas kuykendallii Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas kuykendallii 1007099 QFOH00000000.1 Bac0004531 Companilactobacillus ginsenosidimutans str. EMML 3041 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus ginsenosidimutans 1007676 NZ_CP012034.1 Bac0004532 Halalkalicoccus paucihalophilus str. DSM 24557 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halalkalicoccaceae Halalkalicoccus Halalkalicoccus paucihalophilus 1008153 LTAZ00000000.1 Bac0004533 Fervidobacterium thailandense str. FC2004 "Fervidobacterium thailandense str. FC2004 is a rod-shaped, anaerobic bacterium that thrives optimally at a temperature of 45.0°C. This microbe is classified as an organotroph, meaning it derives its energy from organic compounds. The ability to grow in high-temperature environments suggests that it is well-adapted to geothermal ecosystems, which often feature extreme thermal conditions. ↵↵Fervidobacterium thailandense str. FC2004's anaerobic metabolism indicates its role in environments where oxygen is limited or absent, potentially contributing to organic matter degradation in such habitats. The organism's capacity to utilize organic substrates for energy may facilitate biogeochemical cycles, particularly in anaerobic environments like hot springs or hydrothermal vents, where organic materials can accumulate.↵↵Understanding the metabolic pathways and ecological roles of Fervidobacterium thailandense str. FC2004 could provide insights into microbial life in extreme environments and its contributions to nutrient cycling at elevated temperatures. This strain exemplifies the adaptability of microorganisms to extreme conditions, highlighting the importance of thermophilic anaerobes in maintaining ecological balance in geothermal ecosystems." Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium thailandense rod anaerobic 45 organotroph thermophilic 1008305 LWAF00000000.1 Bac0004534 Streptococcus mitis SK1080 "Streptococcus mitis SK1080 is a Gram-positive bacterium characterized by its cocci shape and its arrangement in chains and pairs. This nonsporulating microbe is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated organism, S. mitis SK1080 is likely to inhabit specific niches within its host, contributing to the complex microbial communities found in various anatomical sites.↵↵The ability of S. mitis SK1080 to exist in chains and pairs may enhance its capacity for colonization and persistence in host environments, where such arrangements can facilitate interactions with other microbial species or host tissues. The facultative anaerobic nature of this strain suggests it can adapt to changing oxygen levels, which is significant given the fluctuating conditions within host-related environments.↵↵Given its association with host habitats, S. mitis SK1080 may play a role in maintaining microbial balance and may interact dynamically with the host immune system. Further investigation into its ecological roles could provide insights into its potential benefits or impacts on host health, particularly in the context of oral microbiota, where Streptococcus species are commonly found. Understanding the characteristics and behaviors of S. mitis SK1080 may ultimately shed light on its contributions to the overall homeostasis of microbial communities within its niches." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1008453 AFQV00000000.1 Bac0004535 Taylorella asinigenitalis MCE3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Taylorella Taylorella asinigenitalis 1008459 NC_016043.1 Bac0004536 Burkholderia cepacia GG4 "Burkholderia cepacia GG4 is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, exhibiting chemotrophic metabolism. As a member of the Burkholderia genus, it is primarily known for its opportunistic pathogenicity, particularly in individuals with compromised immune systems, such as cystic fibrosis patients. This organism is capable of colonizing various body sites, including respiratory tracts, bloodstream, and even skin, making it a versatile and formidable pathogen in clinical settings. The gram-negative characteristic of B. cepacia GG4 is pivotal, as its outer membrane contains lipopolysaccharides, contributing to its virulence and resistance to certain antibiotics. Its rod shape facilitates motility and colonization in diverse environments. As a mesophilic microbe, it optimally grows between 20°C and 37°C, aligning well with the human body temperature, which allows for successful infections and persistence in human hosts. B. cepacia GG4's chemotrophic nature enables it to derive energy from organic compounds, which is crucial when competing with other microorganisms in nutrient-limited environments. This flexibility in nutrient utilization supports its survival in varied ecological niches, including soil and water, where it plays a role in organic matter decomposition and nutrient cycling. Notably, B. cepacia GG4 has been a subject of interest in biotechnological applications, particularly in bioremediation efforts due to its ability to degrade harmful pollutants like benzene and other aromatic compounds. Its unique metabolic pathways and adaptive strategies make it not only a pathogen of concern but also a potential ally in environmental management. Its ability to form biofilms further complicates treatment options, necessitating ongoing research to understand its biology and develop effective therapies." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 1009846 NC_018513.1 Bac0004537 Methylophaga thalassica MP Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga thalassica 1026882 AFIG00000000.1 Bac0004538 Gracilibacillus kekensis "Gracilibacillus kekensis is a Gram-positive, spore-forming bacterium characterized by its rod-shaped morphology and aerobic metabolism. This organism thrives at an optimal temperature of 37.0°C, indicating a preference for mesophilic conditions, which are commonly found in various terrestrial environments. The Gram-positive nature of G. kekensis suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience and ability to form spores, a trait that allows it to withstand harsh conditions and facilitates its survival in fluctuating environments.↵↵As a spore-forming bacterium, G. kekensis is likely to utilize sporulation as a means of enduring unfavorable conditions, thus ensuring its propagation in ecosystems where nutrient availability and other environmental factors may vary. The aerobic requirement of this bacterium indicates its dependence on oxygen for metabolic processes, which may influence its ecological niches and interactions with other microorganisms.↵↵The ability of G. kekensis to form spores and its aerobic lifestyle may position it as a significant player in the cycling of nutrients within its habitat. This characteristic could facilitate its role in decomposing organic matter, thereby contributing to soil health and the maintenance of microbial diversity in ecosystems where it is present. Understanding the ecological function of G. kekensis could provide insights into the dynamics of microbial communities and their contributions to ecosystem processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gracilibacillus Gracilibacillus kekensis Gram-positive rod motile aerobic 37 mesophilic spore-forming 1027249 FRCZ00000000.1 Bac0004539 Endozoicomonas montiporae Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Endozoicomonas Endozoicomonas montiporae 1027273 JOKG00000000.1 Bac0004540 Sporosarcina newyorkensis 2681 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina newyorkensis 1027292 AFPZ00000000.1 Bac0004541 Nocardioides sp. LS1 str. strain LS1 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. LS1 1027620 BIFF00000000.1 Bac0004542 Psychrobacter sp. DAB_AL32B Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. DAB_AL32B 1028414 NEXU00000000.1 Bac0004543 Psychrobacter sp. DAB_AL43B Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. DAB_AL43B 1028416 NZ_LT799838.1 Bac0004544 Sulfolobus acidocaldarius N8 "Sulfolobus acidocaldarius N8 is a coccoid archaeon that thrives in specialized environments, exhibiting an optimal growth temperature of 70.0°C. This organism, characterized by its single-cell arrangement, is classified as a lithotroph, utilizing inorganic compounds as its energy source. As an obligate aerobe, S. acidocaldarius N8 requires oxygen for its metabolic processes, which aligns with its adaptation to extreme thermal and acidic conditions often found in solfataric habitats.↵↵The ability of S. acidocaldarius N8 to survive and grow in such harsh environments highlights its specialized metabolic capabilities, allowing it to play a significant role in biogeochemical cycles within these ecosystems. Its lithotrophic lifestyle suggests that it may contribute to the oxidation of inorganic substrates, potentially influencing the chemical composition of its habitat. Understanding the metabolic pathways and ecological roles of S. acidocaldarius N8 may provide insights into the adaptations of extremophiles and their potential applications in biotechnology, particularly in bioremediation and bioenergy production under extreme conditions." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius Cocci No 1 1 Aerobe 70 Lithotroph Thermophilic Specialized Free living Singles 1028566 NC_020246.1 Bac0004545 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium galegae 1028801 NZ_HG938355.1 Bac0004546 Haemophilus haemolyticus M21621 "Haemophilus haemolyticus M21621 is a Gram-negative bacterium characterized as a facultative anaerobe. This organism belongs to the genus Haemophilus, which is known for its diverse metabolic capabilities and adaptability to varying oxygen conditions. As a facultative anaerobe, H. haemolyticus M21621 can grow in both aerobic and anaerobic environments, allowing it to thrive in a range of habitats where oxygen availability may fluctuate.↵↵The Gram-negative nature of H. haemolyticus M21621 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural feature is significant as it can influence the bacterium's interactions with its environment, including its susceptibility to antibiotics and its immune evasion strategies.↵↵Facultative anaerobes like H. haemolyticus M21621 are often found in diverse ecological niches, including human microbiota and various environmental sources. Their ability to switch between aerobic and anaerobic metabolism enables them to exploit different carbon sources and contribute to biochemical cycles within their ecosystems.↵↵The metabolic flexibility of H. haemolyticus M21621 may play a crucial role in its survival and ecological interactions, particularly in environments where nutrient availability and oxygen levels can change rapidly. Understanding the traits of this bacterium can provide insights into its potential roles in microbial communities and its contributions to biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus haemolyticus Negative Facultative anaerobe 1028805 AFQQ00000000.1 Bac0004547 Haemophilus haemolyticus M21639 "Haemophilus haemolyticus M21639 is a Gram-negative bacterium characterized as a facultative anaerobe. This organism is part of the genus Haemophilus, which includes several species known for their distinct metabolic capabilities and their role in various environments. The Gram-negative nature of H. haemolyticus indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the surrounding environment and contribute to its survival in diverse conditions.↵↵As a facultative anaerobe, H. haemolyticus M21639 can grow in both the presence and absence of oxygen, allowing it to thrive in a variety of habitats, including those with fluctuating oxygen levels. This versatility is particularly significant in microbial communities where oxygen availability may vary, enabling H. haemolyticus to adapt to changing conditions and potentially interact with other microbial species.↵↵The ecological role of H. haemolyticus M21639 may involve participating in the breakdown of organic matter or contributing to nutrient cycling in its environment, although specific ecological interactions remain to be fully characterized. Understanding the metabolic capabilities and ecological roles of such microorganisms can provide insight into their contributions to microbial ecosystems and their potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus haemolyticus Negative Facultative anaerobe 1028806 AFQR00000000.1 Bac0004548 Pseudomonas sp. StFLB209 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. StFLB209 1028989 NZ_AP014637.1 Bac0004549 Ligilactobacillus salivarius NIAS840 "Ligilactobacillus salivarius NIAS840 is a Gram-positive, nonsporulating bacterium characterized by its rod shape and facultative anaerobic metabolism. As a member of the Ligilactobacillus genus, this microbe is associated with various host environments, indicating its potential role in the microbiota of animals and possibly humans. ↵↵The facultative anaerobic nature of L. salivarius NIAS840 allows it to thrive in both aerobic and anaerobic conditions, suggesting adaptability to different microenvironments within host-associated habitats. This trait may enhance its survival and functionality within the gastrointestinal tract, where fluctuating oxygen levels are common. ↵↵The absence of sporulation indicates that this strain does not form endospores, which may influence its resilience and ecological interactions within the host. Given its rod-shaped morphology and positive Gram stain, L. salivarius NIAS840 is likely to exhibit typical characteristics associated with lactic acid bacteria, potentially contributing to fermentation processes and the maintenance of gut health.↵↵The ecological significance of Ligilactobacillus salivarius NIAS840 may extend beyond its metabolic activities, as its presence in host-associated environments could play a role in modulating host immune responses or competing with pathogenic microorganisms, thereby contributing to the overall balance of the microbiome. Further studies are warranted to elucidate its specific interactions and functional contributions within its ecological niche." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1029822 AFMN00000000.1 Bac0004550 Listeria monocytogenes M7 "Listeria monocytogenes M7 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or occurs as single cells. This organism thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic respiration, allowing it to survive in both the presence and absence of oxygen. As a chemoorganotroph, L. monocytogenes M7 utilizes organic compounds as its energy source, which is characteristic of many bacteria that inhabit diverse environments.↵↵The adaptability of L. monocytogenes M7 to various habitats underscores its ecological versatility, as it can thrive in multiple settings, potentially including soil, water, and decaying organic matter. This trait hints at a broader ecological role in nutrient cycling, as it may contribute to the decomposition of organic materials in its environment. Furthermore, its chain formation may facilitate surface attachment and biofilm development, enhancing its survival in fluctuating conditions. Understanding these traits provides insights into the ecological interactions of L. monocytogenes M7 and its potential impact on microbial communities." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles 1030009 NC_017537.1 Bac0004551 Bacillus sp. DB-2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. DB-2 1030092 QNRN00000000.1 Bac0004552 Sphingomonas sp. KC8 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. KC8 1030157 NZ_CP016306.1 Bac0004553 Campylobacter lari subsp. concheus LMG 11760 str. LMG11760 "Campylobacter lari subsp. concheus LMG 11760 str. LMG11760 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and ability to form chains and singles. This subspecies is part of a broader group of Campylobacter species, which are commonly found in a variety of habitats. The microaerophilic nature of C. lari subsp. concheus suggests its adaptation to environments with reduced oxygen levels, which is typical for many Campylobacter species that thrive in specific ecological niches such as animal intestines and contaminated water sources. ↵↵The distinctive morphological trait of spirilla contributes to its motility and ecological versatility, allowing it to navigate its environments effectively. The presence of chains may indicate a potential for cooperative behavior among cells, which could play a role in its survival and interaction within its habitat. Understanding the habitat adaptability and morphological traits of C. lari subsp. concheus can provide insights into its ecological role, particularly in environments where microaerophilic conditions prevail. This ability to thrive in diverse habitats emphasizes the ecological significance of this bacterium within its niche, potentially influencing nutrient cycling and interactions with other microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles 1031536 NZ_CP007771.1 Bac0004554 Bremerella cremea str. HEX PRIS-MGV Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Bremerella Bremerella cremea 1031537 QPEX00000000.1 Bac0004555 Campylobacter volucris "Campylobacter volucris is a Gram-negative, rod-shaped bacterium characterized by its microaerophilic nature, requiring low levels of oxygen for optimal growth. This organism does not form spores, distinguishing it from other bacterial genera that utilize sporulation as a survival strategy in adverse conditions. The distinctive morphology and oxygen requirements of C. volucris suggest adaptations that allow it to thrive in specific ecological niches, particularly those with limited oxygen availability, such as animal gastrointestinal tracts.↵↵C. volucris is part of a broader group of Campylobacter species, which are often studied for their metabolic processes and environmental adaptations. While the pathogenicity and ecological roles of C. volucris are not detailed here, its microaerophilic lifestyle may imply a symbiotic relationship with its host organisms, enabling it to utilize metabolic byproducts in anaerobic conditions. Furthermore, the presence of this bacterium in environments where oxygen levels fluctuate could provide insights into microbial community dynamics and the role of Campylobacter species in nutrient cycling. Understanding the specific habitats and interactions of C. volucris may contribute to a more comprehensive understanding of its ecological significance within the microbiome of various hosts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter volucris Gram-negative rod microaerophile non-spore-forming 1031542 SMTR00000000.1 Bac0004556 Ralstonia solanacearum Po82 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum 1031711 NC_017574.1 Bac0004557 Campylobacter lanienae NCTC 13004 "Currently, very little is known about the microbe 'Campylobacter lanienae NCTC 13004'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lanienae Negative 1 microaerophile 1031753 NZ_CP015578.1 Bac0004558 Campylobacter ureolyticus RIGS 9880 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus 1032069 NZ_CP012195.1 Bac0004559 Aliarcobacter cryaerophilus ATCC 43158 str. LMG 9904 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus 1032070 NZ_CP021073.1 Bac0004560 Neisseria shayeganii 871 "Neisseria shayeganii 871 is a Gram-negative, rod-shaped bacterium classified within the genus Neisseria. This microbe exhibits microaerophilic characteristics, indicating that it requires reduced levels of oxygen for optimal growth. The Gram-negative nature of N. shayeganii 871 suggests the presence of a thinner peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria and contributes to its unique physiological and biochemical properties.↵↵Microaerophilic organisms like N. shayeganii 871 typically inhabit environments where oxygen concentrations are lower than those found in the atmosphere, but higher than those found in anaerobic conditions. This adaptation may facilitate its survival in specific niches, such as mucosal surfaces where oxygen levels can fluctuate. Understanding the specific ecological roles and interactions of N. shayeganii 871 within its environment may provide insights into its potential contributions to microbial communities and the dynamics of host-associated microbiota.↵↵The unique morphology and oxygen requirements of N. shayeganii 871 highlight its adaptation to particular ecological conditions, suggesting a niche specialization that may influence its interactions with other microorganisms and the surrounding environment. Further studies are warranted to explore the ecological implications of this bacterium's microaerophilic lifestyle and its role in microbial ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria shayeganii Gram-negative rod non-motile microaerophile 1032488 AGAY00000000.1 Bac0004561 Rickettsia conorii subsp. heilongjiangensis 054 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia conorii 1032845 NC_015866.1 Bac0004562 Halorhabdus tiamatea SARL4B Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorhabdus Halorhabdus tiamatea 1033806 NC_021913.1 Bac0004563 Flavobacterium branchiophilum FL-15 "Flavobacterium branchiophilum FL-15 is a rod-shaped, nonsporulating bacterium characterized as a chemoheterotroph, indicating its reliance on organic compounds as an energy source. This organism is noted for its presence in multiple habitats, suggesting a versatile ecological adaptability. ↵↵The rod shape of F. branchiophilum FL-15 is a common morphological trait observed in many members of the Flavobacteriaceae family, which may contribute to its survival in diverse environments. As a nonsporulating organism, it does not produce spores for survival under unfavorable conditions, which may indicate a reliance on stable, nutrient-rich environments for persistence and growth.↵↵The chemoheterotrophic metabolism of F. branchiophilum FL-15 allows it to utilize a wide range of organic substrates, thereby enhancing its ecological role in nutrient cycling and organic matter decomposition within various ecosystems. This metabolic flexibility could enable it to thrive in environments where organic compounds are abundant, potentially influencing microbial community dynamics and interactions.↵↵Overall, the traits of Flavobacterium branchiophilum FL-15 suggest that it may play a significant role in the degradation of organic matter in its various habitats, contributing to biogeochemical processes and supporting the health of microbial ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium branchiophilum Rod No 1 Chemoheterotroph Multiple Nonsporulating 1034807 NC_016001.1 Bac0004564 Legionella massiliensis str. FF2 "Legionella massiliensis str. FF2 is a Gram-negative, rod-shaped bacterium belonging to the genus Legionella. This microbe is characterized by its distinct cellular morphology, which can be observed under light microscopy. As a member of the Legionella genus, it is closely related to other species known to inhabit freshwater environments and can be associated with water systems. ↵↵The Gram-negative nature of Legionella massiliensis str. FF2 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that may contribute to its resilience in various aquatic habitats. This structural characteristic is significant as it often influences the bacterium's interactions with its environment, including its susceptibility to antibiotics and its ability to evade host immune responses.↵↵While specific ecological roles and pathogenic potential are not detailed in the provided traits, Legionella species are often studied for their survival in biofilms and their ability to thrive in artificially created water systems, such as cooling towers and plumbing systems. This particular strain may also exhibit similar environmental preferences, potentially making it an important organism for understanding the dynamics of microbial communities in aquatic ecosystems.↵↵Overall, the ecological insight into Legionella massiliensis str. FF2 may lie in its potential role in the microbial dynamics of freshwater systems, where it could contribute to the biodiversity and functionality of these environments, although further research would be necessary to elucidate these aspects fully." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella massiliensis Gram-negative rod non-motile 1034943 CCSB00000000.1 Bac0004565 Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 "Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 is a gram-positive, spherical-shaped bacterium that thrives optimally at human body temperature, making it a mesophilic organism. This microbe functions as a chemoheterotroph, relying on organic compounds for both energy and carbon, and it exhibits facultative anaerobic behavior, allowing it to grow in the presence or absence of oxygen. As a member of the Streptococcus genus, S. constellatus subsp. pharyngis is predominantly found in the human oral cavity and upper respiratory tract. It can inhabit various body sites, including the throat, saliva, and dental plaques, where it contributes to the complex microbiome. Its ability to adjust to different environments, together with its facultative anaerobic nature, enables it to thrive in diverse habitats, including niches with fluctuating oxygen levels. The biochemical capabilities of S. constellatus subsp. pharyngis allow it to ferment carbohydrates, producing lactic acid as a primary byproduct, which plays a significant role in oral health by inhibiting the growth of pathogenic bacteria. Moreover, its presence in the throat signifies its potential to be an opportunistic pathogen, particularly in immunocompromised individuals, where it may be associated with conditions such as pharyngitis or infections following dental procedures. Additionally, this bacterium is the subject of ongoing research due to its role in human health and diseases. For instance, its interactions within biofilms and its potential pathogenicity in various conditions highlight its significance as a probiotic candidate, aimed at enhancing oral health and maintaining a balanced microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus constellatus Positive Cocci Facultative anaerobe 1035184 AFUP00000000.1 Bac0004566 Streptococcus parasanguinis SK236 "Streptococcus parasanguinis SK236 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. As a nonsporulating organism, it thrives in host-associated environments, where it can adapt to varying conditions. This strain is classified as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen, which is a significant trait for survival in diverse biological niches.↵↵The ability of S. parasanguinis SK236 to exist in host-associated habitats suggests a potential role in the microbial communities of various organisms, particularly in the human oral cavity, where it may contribute to the complex ecosystem of resident microbiota. The facultative anaerobic nature of this microbe indicates its adaptability to fluctuating oxygen levels, which is a common characteristic of many oral streptococci. This adaptability is crucial for maintaining its presence in the dynamic conditions of host environments, where it may interact with other microbial species.↵↵Understanding the traits of S. parasanguinis SK236 contributes to a broader comprehension of the microbial dynamics within host-associated ecosystems, particularly in relation to its potential interactions with other members of the oral microbiome and its implications for oral health. This insight underscores the importance of studying such microbes in the context of their ecological roles and interactions within complex biological systems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1035185 AFUC00000000.1 Bac0004567 Streptococcus mitis SK569 "Streptococcus mitis SK569 is a Gram-positive coccus that typically forms chains and pairs, exhibiting a nonsporulating lifestyle. This bacterium is facultative anaerobic, allowing it to thrive in various oxygen conditions, which is particularly advantageous in host-associated environments. Streptococcus mitis species are commonly found in the human oral cavity and respiratory tract, indicating their adaptation to the host-associated habitat.↵↵As a member of the Streptococcus genus, S. mitis SK569 is characterized by its ability to ferment carbohydrates, contributing to its metabolic versatility in both aerobic and anaerobic conditions. The facultative anaerobic nature of this organism suggests that it can adapt to fluctuating oxygen levels within its host environment, potentially playing a role in the complex microbial communities that inhabit mucosal surfaces.↵↵The presence of S. mitis SK569 in the host-associated microbiome may have implications for maintaining oral health, as its interactions with other microbial species can influence overall microbial balance. Furthermore, understanding the ecological role of this strain in the context of the human microbiome may provide insights into its contributions to health and disease, particularly in relation to oral ecology and the dynamics of microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1035187 AFUF00000000.1 Bac0004568 Haemophilus pittmaniae HK 85 "Haemophilus pittmaniae HK 85 is a nonsporulating, chemoheterotrophic bacterium that has garnered interest due to its unique ecological niche and potential applications. Part of the genus Haemophilus, this microbe is typically associated with various biological environments, although its specific habitat remains relatively unexplored in the literature. As a member of the Haemophilus genus, H. pittmaniae HK 85 likely shares some of the metabolic characteristics characteristic of this group, which often thrive in nutrient-rich environments and can engage in symbiotic relationships with various organisms. The chemoheterotrophic nature of H. pittmaniae HK 85 indicates that it must rely on organic compounds for its energy and carbon needs, suggesting a potential role in nutrient cycling within its ecosystem. The significance of H. pittmaniae HK 85 is highlighted by its possible implication in human health and environmental microbiology. Bacteria in the Haemophilus genus are known to be part of the human microbiota, and their interactions can influence health, disease, and even antibiotic resistance. Moreover, studying this microbe could provide insights into microbial diversity and its contribution to ecosystem stability. A unique aspect of H. pittmaniae HK 85 is its potential role in bioremediation processes, particularly if it possesses the ability to degrade organic pollutants. Its presence in specific environments could mean it plays a key role in detoxifying contaminated sites, thereby underscoring the importance of further research into its ecological functions and potential applications in biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus pittmaniae No 1 Chemoheterotroph Nonsporulating 1035188 AFUV00000000.1 Bac0004569 Streptococcus oralis SK313 "Streptococcus oralis SK313 is a Gram-positive coccus that typically arranges itself in pairs or chains. This bacterium is classified as a facultative anaerobe, indicating its capacity to thrive in both aerobic and anaerobic environments, which may facilitate its survival in diverse host-associated habitats. ↵↵S. oralis SK313 is part of the oral microbiota, where it is commonly found in association with human hosts. Its presence in the oral cavity underscores its potential role in the complex microbial communities that inhabit this environment, contributing to both homeostasis and potentially influencing oral health. Given its characteristic arrangement and oxygen requirements, this strain may exhibit metabolic flexibility, allowing it to adapt to varying conditions within the host's oral ecosystem.↵↵The ecological significance of S. oralis SK313 lies in its involvement in the intricate balance of oral microbiota, where it may participate in nutrient cycling and interactions with other microbial species. Understanding its specific roles within these communities could enhance insights into microbial dynamics and health implications in the oral cavity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1035190 AFUU00000000.1 Bac0004570 Capnocytophaga sp. oral taxon 326 str. F0382 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 326 1035193 AMEU00000000.1 Bac0004571 Bifidobacterium longum subsp. longum KACC 91563 "Bifidobacterium longum subsp. longum KACC 91563 is a Gram-positive, obligately anaerobic, rod-shaped microbe that thrives in a temperature range of mesophilic to thermophilic conditions, with an optimal growth temperature of around 37°C (preferred temperature range: 20-45°C). This microbe is a chemoheterotroph, meaning it uses organic compounds as its energy source, and produces energy through the breakdown of complex molecules. Specifically, it ferments carbohydrates, such as sugars, to produce ATP and organic acids. The shape of Bifidobacterium longum subsp. longum KACC 91563 is characteristic of the genus, with a distinctive Y-shaped or V-shaped morphological feature. As a Gram-positive microbe, its cell wall composition is rich in peptidoglycan, which imparts its distinctive staining properties. This microbe is capable of colonizing various body sites, including the gut, respiratory tract, urogenital tract, and skin. In fact, it is one of the most abundant species in the human gut microbiome, where it plays a crucial role in maintaining a balanced ecosystem. Oxygen preference is another crucial aspect, as Bifidobacterium longum subsp. longum KACC 91563 is an obligate anaerobe, unable to grow in the presence of oxygen. This adaptation is likely a result of its evolution in the deep layers of the gut, where oxygen levels are limited. In addition to its physiological characteristics, Bifidobacterium longum subsp. longum KACC 91563 has been found to produce a range of bioactive compounds, including vitamins, polypeptides, and anticancer agents. Furthermore, research has implicated this species in the prevention of diseases such as inflammatory bowel disease, allergies, and cancer, making it a valuable target for further study and potential therapeutic applications." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1035817 NC_017221.1 Bac0004572 Aliarcobacter butzleri 7h1h Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri 1036172 NC_021878.1 Bac0004573 Methanosarcina spelaei str. MC-15 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina spelaei 1036679 LMVP00000000.1 Bac0004574 Allobosea lathyri Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea lathyri 1036778 FNUY00000000.1 Bac0004575 Macellibacteroides fermentans "Macellibacteroides fermentans is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and reproduction. ↵↵As a member of the microbiota, M. fermentans may play a role in the complex interactions within anaerobic habitats, such as the human gut or other similar ecosystems. Its anaerobic requirement indicates that it may be involved in processes such as fermentation, potentially contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are important for host metabolism and health. ↵↵The specific physiological traits of M. fermentans may suggest its involvement in maintaining the stability of the microbial community it inhabits, as well as in nutrient cycling within anaerobic environments. Understanding the role of this organism could provide insights into its contributions to microbial diversity and metabolic functions in these ecosystems. Further research into its specific interactions and functions may elucidate its ecological significance and potential applications in biotechnology or health sciences." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Macellibacteroides Macellibacteroides fermentans Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 1037355 FUYQ00000000.1 Bac0004576 Pelagimonas phthalicica Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pelagimonas Pelagimonas phthalicica 1037362 FXXP00000000.1 Bac0004577 Mycoplasmopsis columbinum SF7 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis columbina 1037410 AFXA00000000.1 Bac0004578 Pseudomonas fluorescens Q2-87 "Pseudomonas fluorescens Q2-87 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in aerobic environments. This strain exhibits heterotrophic metabolism, utilizing organic compounds as its energy source. The optimal growth temperature for Pseudomonas fluorescens Q2-87 is approximately 25°C, which aligns with its adaptation to a variety of habitats, suggesting a versatile ecological niche.↵↵The ability of Pseudomonas fluorescens Q2-87 to grow in multiple environments indicates its potential role in various ecological interactions, possibly contributing to nutrient cycling in soil or aquatic systems. Its aerobic nature further suggests that it may play a significant role in the degradation of organic matter in oxygen-rich conditions. This adaptation to diverse habitats enhances its potential utility in bioremediation processes, where it could be employed to mitigate pollution through the breakdown of organic pollutants.↵↵In summary, the characteristics of Pseudomonas fluorescens Q2-87 illustrate its adaptability and functional importance in ecological contexts, particularly in environments where organic substrates are present and aerobic conditions prevail." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1038922 NZ_CM001558.1 Bac0004579 Pseudomonas fluorescens Q8r1-96 "Pseudomonas fluorescens Q8r1-96 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits heterotrophic characteristics, utilizing organic compounds as its energy source. It thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating that it requires oxygen for growth.↵↵The ability of Pseudomonas fluorescens Q8r1-96 to adapt to various habitats suggests its ecological versatility and potential role in diverse environments. Its presence in multiple habitats may contribute to its significance in biogeochemical cycles, particularly in the degradation of organic materials. Understanding the specific interactions and functions of this strain within its ecological niches can provide insight into its potential applications in biotechnology, such as bioremediation or plant growth promotion." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1038923 AHPO00000000.1 Bac0004580 Ligilactobacillus ruminis SPM0211 "Ligilactobacillus ruminis SPM0211 is a Gram-positive, rod-shaped bacterium classified within the lactic acid bacteria group. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Such metabolic flexibility may enable L. ruminis SPM0211 to adapt to a variety of ecological niches, particularly within the gastrointestinal tracts of ruminants, where it could play a role in the fermentation processes that are critical for the digestion of complex carbohydrates.↵↵The rod shape of L. ruminis SPM0211 suggests a potential adaptation to its environment, possibly facilitating its colonization in varied substrates. The ability to function in the presence or absence of oxygen may confer a competitive advantage in dynamic ecosystems where oxygen levels can fluctuate. Furthermore, being a member of the Ligilactobacillus genus, this strain is likely to participate in lactic acid production, which not only contributes to the overall metabolic activity of the gut microbiome but may also influence the pH and microbial composition of its environment.↵↵The ecological role of Ligilactobacillus ruminis SPM0211 could extend beyond fermentation, potentially impacting the health and nutrient absorption in ruminants. Its adaptability to different oxygen conditions highlights its potential significance in maintaining a balanced microbial ecosystem within the host, suggesting that it may contribute to the overall metabolic health of the ruminant digestive system." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ruminis Positive Rod Facultative anaerobe 1040964 AFOJ00000000.1 Bac0004581 Brevibacillus laterosporus LMG 15441 "Brevibacillus laterosporus LMG 15441 is a rod-shaped bacterium characterized by its notable resilience and adaptability in various environments. This microorganism belongs to the genus Brevibacillus, which is recognized for its ability to form endospores, enhancing its survival in harsh conditions. While specific information on its metabolic capabilities and ecological roles is limited, members of the Brevibacillus genus are generally known for their utility in biotechnological applications, such as in the production of enzymes and biopesticides.↵↵The rod shape of Brevibacillus laterosporus suggests an adaptability to different growth conditions, potentially allowing for diverse interactions with its environment. The ability to form endospores may also enable this organism to withstand extreme environmental stresses, including heat, desiccation, and nutrient deprivation. This resilience could facilitate its colonization of various ecological niches, although further research is required to elucidate its specific ecological interactions and roles.↵↵In summary, Brevibacillus laterosporus LMG 15441 exemplifies the characteristics of a resilient rod-shaped bacterium capable of surviving in challenging environments, which may have implications for its application in biotechnological fields and its potential interactions within microbial communities. Understanding these traits could provide insights into its ecological significance and potential for practical applications." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus laterosporus Rod 1042163 NZ_CP007807.1 Bac0004582 Pseudomonas fluorescens HK44 "Pseudomonas fluorescens HK44 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, relying on organic compounds for its energy source, and it thrives optimally at a temperature of 25.0°C. As an aerobic organism, P. fluorescens HK44 requires oxygen for its metabolic processes, which is indicative of its adaptability to various environments.↵↵Found in multiple habitats, Pseudomonas fluorescens species are often associated with soil, water, and plant surfaces, where they play a significant role in nutrient cycling and organic matter decomposition. Their ability to metabolize a wide range of organic substrates allows them to occupy diverse ecological niches and contribute to the microbial community structure in these environments.↵↵Interestingly, the metabolic versatility of Pseudomonas fluorescens HK44 may position it as a potential candidate for bioremediation applications, as its heterotrophic nature enables it to break down various environmental pollutants. Moreover, the capacity to thrive in aerobic conditions suggests that it could be utilized in aerobic treatment systems, where oxygen availability is crucial for efficient degradation of contaminants. Overall, the ecological significance of Pseudomonas fluorescens HK44 lies in its potential contributions to environmental sustainability through its metabolic capabilities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1042209 NZ_AFOY02000029.1 Bac0004583 Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 "Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is optimally active at a temperature of 42.0°C, which suggests a preference for warm habitats, potentially including those found in fermented dairy products.↵↵L. delbrueckii subsp. bulgaricus is commonly associated with the production of yogurt and other fermented dairy items, where it plays a crucial role in the fermentation process. Its ability to grow in chains may contribute to its stability and function in these ecosystems. The strain's facultative anaerobic nature further implies versatility in its metabolic capabilities, enabling it to adapt to varying oxygen levels during fermentation.↵↵This adaptability not only highlights the strain's ecological flexibility but also underscores its significance in the dairy industry, where it aids in the development of desired flavors and textures in yogurt. The unique combination of its temperature preference, cell arrangement, and oxygen requirement positions L. delbrueckii subsp. bulgaricus CNCM I-1519 as an important microbial player in both food fermentation processes and the broader ecological niches associated with warm, nutrient-rich environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1042400 AGHW00000000.1 Bac0004584 Brachyspira pilosicoli P43/6/78 "Brachyspira pilosicoli P43/6/78 is a Gram-negative, anaerobic bacterium known for its particular metabolic and structural characteristics. This microbe is part of the genus Brachyspira, which is characterized by its helical shape and motility, typically facilitated by its unique flagellar structure. As an anaerobe, B. pilosicoli P43/6/78 is adapted to thrive in environments devoid of oxygen, which influences its habitat preferences and metabolic pathways.↵↵The Gram-negative status of B. pilosicoli indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this bacterial group. This structural feature contributes to its resilience in various environments and may affect its interactions with other microorganisms and host organisms. ↵↵Understanding the anaerobic nature of B. pilosicoli P43/6/78 is critical for elucidating its ecological role, particularly in environments where oxygen levels are limited. This trait suggests a potential association with intestinal microbiomes of host organisms, where anaerobic conditions are prevalent. The ability to thrive in such niches may confer unique advantages in nutrient utilization and competition with other gut microbiota. Further investigation into its ecological interactions could provide insights into the dynamics of microbial communities in anaerobic environments, highlighting the significance of Brachyspira species in maintaining gut health and microbial diversity." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli Negative Anaerobe 1042417 NC_019908.1 Bac0004585 Bacillus thuringiensis serovar sinensis "Bacillus thuringiensis serovar sinensis is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, which enables it to survive in various environmental conditions. This species is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, allowing it to thrive in diverse habitats, particularly those associated with specific hosts. ↵↵Bacillus thuringiensis serovar sinensis is primarily recognized for its role in biological pest control, leveraging its sporulation capability to produce insecticidal crystal proteins during its life cycle. These proteins are effective against certain insect larvae, making the bacterium of interest in agricultural applications where pest management is crucial. ↵↵The host-associated habitat of Bacillus thuringiensis serovar sinensis suggests a potential symbiotic relationship with its hosts, which may serve as reservoirs for the bacterium, facilitating its survival and dissemination in the environment. This association may also influence the bacterium's ecological interactions, such as its competition with other microbial communities or its role in nutrient cycling within the host's ecosystem. Overall, Bacillus thuringiensis serovar sinensis exemplifies the intricate relationships that microorganisms can form with their environments and hosts, highlighting its significance in both ecological and applied microbiological contexts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1042875 MOOW00000000.1 Bac0004586 Cupriavidus necator N-1 "Ralstonia eutropha strain H16 is a facultatively lithoautotrophic, soil dwelling betaproteobacterium that is used for the production of a biodegradable thermoplastic (Biopol) on an industrial scale. It is able to grow with only H2 and CO2 as its sole sources of energy and carbon. In the absence of O2 it can also grow anaerobically using dentrification as an energy source. It also serves as a model organism for genetics and control of autotrophic carbon dioxide fixation and hydrogen oxidation. Taking advantage of its lithoautotrophic capability when growing on H2, it might be developed as cell factory in a future hydrogen-based biotechnology for the production of diverse, commercially valuable compounds such as metabolites and polymers. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator N-1 Negative Rod Yes 1 2 Aerobic 30 Heterotroph - Chemolithoautotroph Mesophilic Fresh water - Soil Free living No 1042878 NC_015726.1 Bac0004587 Demequina mangrovi "Demequina mangrovi is a Gram-positive, ovoid-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics. This microbe thrives at an optimal temperature of 29.0 degrees Celsius and is noted for its non-spore-forming nature. The Gram-positive classification suggests a thick peptidoglycan layer in its cell wall, which may confer certain advantages in various environmental conditions.↵↵The facultative nature of D. mangrovi indicates that it can adapt to both aerobic and anaerobic environments, allowing it to occupy diverse ecological niches. This adaptability may be particularly beneficial in fluctuating conditions, such as those found in mangrove ecosystems, where oxygen availability can vary significantly due to tidal influences and organic matter decomposition.↵↵Understanding the physiological traits of Demequina mangrovi may provide insights into its potential role in biogeochemical cycles within its habitat. Its ability to thrive in a range of oxygen levels suggests that it could participate in organic matter breakdown, thereby influencing nutrient cycling in mangrove ecosystems. Further investigations into its metabolic pathways and interactions with other microbial communities could reveal additional ecological functions that are significant for maintaining the health and stability of these complex environments." Bacillati Actinomycetota Actinomycetes Micrococcales Demequinaceae Demequina Demequina mangrovi Gram-positive ovoid non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 1043493 FNZI00000000.1 Bac0004588 Oenococcus kitaharae DSM 17330 str. DSM17330 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Oenococcus Oenococcus kitaharae 1045004 NZ_CM001398.1 Bac0004589 Neptunomonas qingdaonensis "Neptunomonas qingdaonensis is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 16.0°C. This microbe was first isolated from marine environments, suggesting a specific adaptation to cooler, oxygen-rich aquatic habitats. The Gram-negative nature of N. qingdaonensis indicates the presence of a thin peptidoglycan layer and an outer membrane, which may contribute to its resilience in fluctuating environmental conditions typically found in marine ecosystems.↵↵The preference for lower temperatures and aerobic conditions may reflect its ecological role in decomposing organic matter and recycling nutrients in marine settings. Such metabolic capabilities are critical for maintaining the health of marine ecosystems, particularly in nutrient-rich areas where organic carbon is abundant. Understanding the physiological traits of N. qingdaonensis can provide insights into its potential contributions to biogeochemical cycles in these habitats, as well as its interactions with other microbial communities. Further research into its metabolic pathways and ecological interactions could elucidate its role in marine microbiomes and its responses to environmental changes, particularly in the context of global climate fluctuations affecting ocean temperatures and oxygen levels." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptunomonas Neptunomonas qingdaonensis Gram-negative rod aerobic 16 psychrotolerant 1045558 FOOU00000000.1 Bac0004590 Weissella koreensis KACC 15510 Bacterial genomic DNA - kimch fermentation. (NCBI BioProject: bp_list[1]) Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella koreensis KACC 15510 Rod No Free living Nonsporulating 1045854 NC_015756.1 Bac0004591 Pseudoxanthomonas spadix BD-a59 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas spadix 1045855 NC_016147.2 Bac0004592 Brachyspira intermedia PWS/A Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira intermedia 1045858 NC_017242.1 Bac0004593 Liquorilactobacillus mali KCTC 3596 = DSM 20444 "Liquorilactobacillus mali KCTC 3596 (also designated DSM 20444) is a rod-shaped, non-sporulating bacterium classified within the lactic acid bacteria group. This microbe exhibits a chemoheterotrophic mode of energy metabolism, utilizing organic compounds as its primary energy source, which is characteristic of many lactic acid bacteria. Its optimal growth temperature is approximately 30.0°C, suggesting that it thrives in moderately warm environments. ↵↵Isolated from dairy habitats, L. mali KCTC 3596 is likely adapted to the conditions present in fermented dairy products, where it may play a role in the fermentation process. The absence of sporulation indicates that this bacterium does not form spores, which may reflect its ecological niche in environments where survival under harsh conditions is less critical. ↵↵Given its isolation from dairy, L. mali KCTC 3596 could contribute to the flavor and texture profiles of fermented dairy products, potentially influencing the overall quality and sensory characteristics of these foods. The insights into its ecological role may provide a foundation for exploring its applications in food fermentation and probiotic development, as lactic acid bacteria are often valued for their beneficial properties in food science and human health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus mali Rod No 1 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1046596 AYYH00000000.1 Bac0004594 Nocardia sp. CS682 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. CS682 1047172 NZ_CP029710.1 Bac0004595 Streptomyces uncialis str. DCA2648 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces uncialis 1048205 LFBV00000000.1 Bac0004596 Mycobacterium canettii CIPT 140010059 (NCBI BioProject: PRJNA72459) Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium canetti Positive Rod No Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating 1048245 NC_015848.1 Bac0004597 Leptospirillum ferriphilum ML-04 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferriphilum 1048260 NC_018649.1 Bac0004598 Compostimonas suwonensis str. DSM 25625 "Compostimonas suwonensis str. DSM 25625 is a Gram-positive, rod-shaped bacterium that exhibits aerobic respiration and is characterized by its inability to form spores. This species thrives at an optimal temperature of 29.0 °C, suggesting a preference for moderate environmental conditions. The Gram-positive nature of C. suwonensis indicates a thicker peptidoglycan layer in its cell wall, which may contribute to its stability and resilience in various habitats.↵↵As an aerobic organism, Compostimonas suwonensis requires oxygen for its metabolic processes, which may influence its ecological roles, particularly in environments rich in organic matter where oxygen is present. This adaptation potentially positions C. suwonensis as an important player in the degradation of organic materials, contributing to nutrient cycling and soil health. The organism's specific temperature preference reflects its possible adaptation to specific microhabitats, which could be relevant in composting or similar biological waste management processes.↵↵Understanding the traits of Compostimonas suwonensis can provide insight into its role in microbial communities and its potential applications in biotechnological processes, especially those aimed at enhancing composting efficiency or organic waste breakdown." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Compostimonas Compostimonas suwonensis Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1048394 PGFB00000000.1 Bac0004599 endosymbiont of Riftia pachyptila (vent Ph05) Pseudomonadati Pseudomonadota Gammaproteobacteria endosymbiont of Riftia pachyptila 1048808 AFOC00000000.1 Bac0004600 endosymbiont of Tevnia jerichonana (vent Tica) Pseudomonadati Pseudomonadota Gammaproteobacteria endosymbiont of Tevnia jerichonana 1049564 AFZB00000000.1 Bac0004601 Kocuria marina subsp. indica Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria marina 1049583 NZ_CP035504.1 Bac0004602 Leptospira alexanderi serovar Manhao 3 str. L 60 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira alexanderi 1049759 AHMT00000000.2 Bac0004603 Leptospira borgpetersenii serovar Javanica str. UI 09931 "Leptospira borgpetersenii serovar Javanica str. UI 09931 is a Gram-negative, nonsporulating bacterium characterized by its spirilla shape and aerobic metabolism. This microbe is classified within the genus Leptospira, which is known for its distinctive helical morphology and its adaptation to host-associated environments. The aerobic nature of L. borgpetersenii suggests that it requires oxygen for growth and may thrive in environments that provide adequate oxygen levels, such as within host tissues or fluids.↵↵As a member of the Leptospira genus, L. borgpetersenii serovar Javanica str. UI 09931 is likely to exhibit motility, which is a common trait among spirilla, facilitating its movement through aqueous environments. The habitat of this strain is notably host-associated, indicating a potential symbiotic or parasitic relationship with its host. ↵↵The ecological implications of L. borgpetersenii serovar Javanica str. UI 09931 may involve its role in the microbiome of its host, contributing to the overall microbial diversity and influencing host health. This strain's adaptation to aerobic conditions also highlights the importance of oxygen availability in ecological niches inhabited by leptospires, which could inform future research on their environmental interactions and potential roles in biogeochemical cycles." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 1049767 AHNP00000000.2 Bac0004604 Leptospira broomii serovar Hurstbridge str. 5399 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira broomii 1049789 AHMO00000000.2 Bac0004605 Leptospira inadai serovar Lyme str. 10 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira inadai 1049790 AHMM00000000.2 Bac0004606 Leptospira interrogans serovar Pyrogenes str. L0374 "Leptospira interrogans serovar Pyrogenes str. L0374 is a Gram-negative, spiral-shaped bacterium that functions as an aerobic organism, with an optimal growth temperature of 28.0°C. This microbe is predominantly found in host-associated habitats, indicating a close relationship with its biological hosts. ↵↵As a member of the genus Leptospira, this strain shares characteristics typical of spirilla, which are known for their distinctive helical shape and motility. The Gram-negative nature of L. interrogans serovar Pyrogenes str. L0374 suggests a complex cell wall structure, which includes an outer membrane containing lipopolysaccharides, contributing to its potential interactions with host immune systems.↵↵Given its optimal growth temperature of 28.0°C, L. interrogans serovar Pyrogenes str. L0374 may thrive in environments that mimic the conditions of its natural hosts, often associated with warm, moist climates. Its aerobic requirement indicates that oxygen is essential for its metabolic processes, which is a common trait among many pathogenic species of the genus Leptospira.↵↵In a broader ecological context, the close association of this bacterium with hosts may facilitate the transfer of genetic material within microbial communities, potentially influencing the dynamics of host-associated microbiomes and their responses to environmental changes. This characteristic highlights the importance of understanding the ecological roles of such bacteria in their natural habitats." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1049928 AHMZ00000000.2 Bac0004607 Leptospira interrogans str. UI 12621 "Leptospira interrogans strain UI 12621 is a Gram-negative, spiral-shaped bacterium that thrives as an aerobe, with an optimal growth temperature of 28.0°C. This strain is classified within the Leptospira genus, which is characterized by its helical morphology and motility, typically found in host-associated environments. ↵↵As a member of the pathogenic Leptospira species, this strain is likely adapted to a lifestyle intimately linked to its host, potentially contributing to its survival and proliferation within specific ecological niches. The organism’s aerobic metabolic pathways suggest a reliance on oxygen-rich environments, which may influence its distribution and interactions within host-associated habitats. ↵↵The ecological dynamics of L. interrogans strain UI 12621 may reflect its adaptation to various host species, potentially facilitating its transmission and persistence in environments where hosts are present. Understanding the growth conditions and habitat preferences of this strain can provide insights into its ecological role and potential impact on host health." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1049937 AHNQ00000000.2 Bac0004608 Leptospira kirschneri str. H1 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira kirschneri 1049966 AHMY00000000.2 Bac0004609 Leptospira weilii str. Ecochallenge Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira weilii 1049986 AHMI00000000.2 Bac0004610 Paenibacillus sp. Aloe-11 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Aloe-11 1050222 AGFI00000000.1 Bac0004611 Thiomonas sp. X19 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Thiomonas Thiomonas sp. X19 1050370 NZ_LT605203.1 Bac0004612 Escherichia coli UMNF18 "Escherichia coli UMNF18 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This strain exhibits optimal growth at 37.0°C, a temperature that corresponds with the physiological conditions of warm-blooded hosts, suggesting a potential adaptation to life within a host-associated habitat. ↵↵E. coli UMNF18's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer advantages such as resistance to certain antibiotics and the ability to interact with host immune responses. Its facultative anaerobic metabolism enables it to utilize a variety of substrates for energy production, potentially allowing it to colonize diverse niches within a host organism. ↵↵The specific ecological role of E. coli UMNF18 remains to be elucidated; however, its presence in host-associated environments indicates it may play a significant role in the microbiota composition and function. Understanding the interactions of this strain within the microbiome may provide insights into its contributions to host health or disease states, highlighting the complex relationships between host organisms and their microbial inhabitants." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1050617 NZ_AGTD01000001.1 Bac0004613 Agrobacterium tumefaciens F2 "Agrobacterium tumefaciens F2 is a mesophilic, chemoheterotrophic bacterium that is Gram-negative, rod-shaped, and typically found in soil and plant-associated environments. As a mesophile, it thrives optimally at moderate temperatures, generally between 20°C and 30°C, making it well-suited for growth in temperate climates. Its chemoheterotrophic metabolism allows it to derive energy from organic compounds, utilizing them as both carbon and energy sources, which is particularly beneficial in nutrient-rich environments such as rhizospheres. The Gram-negative nature of A. tumefaciens F2 is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural feature not only contributes to its staining properties but also plays a role in its pathogenicity and interactions with host plants. The rod shape of the bacterium enables motility, which is essential for colonizing plant tissues. A. tumefaciens F2 is primarily associated with various plant species, where it infects wounds and facilitates the transfer of its T-DNA into the plant genome, leading to the formation of crown gall tumors. This unique ability to manipulate plant cell genetics exemplifies its role in biotechnology, particularly in genetic engineering applications. This microbe is also known for its capacity to produce opines, which serve as a nutrient source for itself and attract other microbes, thereby creating a unique ecological niche. Its role in plant-microbe interactions extends beyond pathogenicity, as it can also promote plant growth under certain conditions. In agricultural research, A. tumefaciens F2 has been harnessed for the development of genetically modified crops, demonstrating its significance in both ecological and biotechnological contexts." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1050720 AFSD00000000.1 Bac0004614 [Propionibacterium] namnetense SK182B-JCVI Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium namnetense 1051006 AFUN00000000.1 Bac0004615 Vibrio tubiashii ATCC 19109 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tubiashii 1051646 NZ_CP009355.1 Bac0004616 Lacticaseibacillus casei A2-362 "Lacticaseibacillus casei A2-362 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives optimally at a temperature of 30.0°C. This species is classified as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen, which may contribute to its adaptability in various environments. Lacticaseibacillus casei A2-362 is found in specialized habitats, indicating a potential association with specific ecological niches where it may play a significant role in microbial communities.↵↵The chains formed by Lacticaseibacillus casei A2-362 suggest a cooperative behavior that could enhance its survival and functionality in its environment, particularly in contexts that may involve fermentation processes or interactions with other microorganisms. The ability to thrive at moderate temperatures and under varying oxygen conditions underscores its potential utility in biotechnological applications, such as probiotic formulations or food fermentation. The unique combination of its morphological and physiological traits points towards a specialized lifestyle, potentially making it an important player in the microbiota of its native habitat, where it may influence nutrient cycling or contribute to the stability of microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains 1051653 AFYM00000000.1 Bac0004617 Lacticaseibacillus casei UW4 "Lacticaseibacillus casei UW4 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in specialized habitats. This microorganism exhibits a facultative anaerobic metabolism, allowing it to adapt to varying oxygen conditions within its environment. It has an optimal growth temperature of 30.0 °C, which suggests that it is well-suited for environments that maintain mild thermal conditions.↵↵As a member of the Lacticaseibacillus genus, L. casei UW4 is likely associated with fermentation processes, which are crucial in various food production settings, particularly in dairy and plant-based substrates. The ability to grow in chains may facilitate cooperative interactions in biofilms, enhancing its survival and metabolic efficiency in specialized niches.↵↵The ecological role of L. casei UW4 may extend beyond fermentation, possibly contributing to the modulation of microbial communities in its habitat. Its facultative anaerobic nature enables it to thrive in both oxygen-rich and oxygen-poor environments, potentially influencing local microbial dynamics through competitive interactions or by altering the biochemical environment. Overall, Lacticaseibacillus casei UW4 represents a versatile microbe with implications for food microbiology and ecological interactions within its specialized habitat." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains 1051661 AFYS00000000.1 Bac0004618 Rhodococcoides fascians D188 "Rhodococcoides fascians D188 is a cocci-shaped bacterium, characterized by its spherical morphology. This organism is classified within the genus Rhodococcoides, which is known for its unique physiological and biochemical properties. While specific information regarding its metabolic capabilities, growth conditions, and ecological roles is limited, the cocci shape suggests a potential adaptation to various environments, possibly allowing it to thrive in diverse habitats.↵↵The genus Rhodococcoides is generally associated with the degradation of organic compounds, which may indicate that R. fascians D188 could play a role in biogeochemical cycles, particularly in the breakdown of complex organic materials. Such traits could suggest its involvement in soil health and nutrient cycling, although empirical studies would be necessary to confirm these ecological functions.↵↵The distinct spherical form of R. fascians D188 may also influence its interactions within microbial communities, potentially affecting its competitive strategies and symbiotic relationships. Further investigation into its ecological niche and interactions with other microorganisms could provide valuable insights into its functional role in microbial ecosystems. Understanding the specific traits and behaviors of this bacterium will enhance our knowledge of microbial diversity and functionality in various environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians Cocci 1051973 NZ_CP015237.1 Bac0004619 Streptococcus equi subsp. ruminatorum CECT 5772 "Streptococcus equi subsp. ruminatorum CECT 5772 is a Gram-positive coccus characterized by its arrangement in pairs and chains. This strain is nonsporulating and exhibits a facultative anaerobic metabolism, allowing it to thrive in varied oxygen conditions. As a host-associated microbe, S. equi subsp. ruminatorum CECT 5772 is typically found in association with specific hosts, although the exact nature of these associations remains to be fully elucidated.↵↵The coccal morphology and chain-like cell arrangement are distinctive features that suggest a potential role in intercellular communication or biofilm formation, which are common traits among Streptococcus species. The facultative nature of this strain implicates its adaptability to different environments, enabling it to survive in both aerobic and anaerobic conditions, which is essential for colonization and persistence in host-associated niches.↵↵Understanding the ecological role of S. equi subsp. ruminatorum CECT 5772 may provide insights into its interactions within host microbiomes, contributing to the overall balance of microbial communities. This adaptability and potential for host association highlight the importance of this strain in studies related to microbial ecology and host-microbe interactions, particularly in ruminant health and disease contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Pairs-Chains Nonsporulating 1051981 AWEX00000000.1 Bac0004620 Bathymodiolus heckerae thiotrophic gill symbiont Bathymodiolus heckerae thiotrophic gill symbiont 1052212 FQTP00000000.1 Bac0004621 Bacillus cereus BAG1X2-1 "Bacillus cereus BAG1X2-1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain exhibits optimal growth at a temperature of 25.0°C and is capable of inhabiting multiple environments, suggesting a versatile ecological adaptability. As a member of the Bacillus genus, it is likely to possess characteristics commonly associated with soil-dwelling microorganisms, including resilience to various environmental stressors.↵↵The formation of chains is a notable morphological trait that may play a role in the bacterium's interactions with its surroundings, potentially influencing its ability to colonize diverse habitats. The aerobic nature of Bacillus cereus BAG1X2-1 indicates that it requires oxygen for growth, which could limit its ecological niches to well-aerated environments. ↵↵Given its broad habitat range, this strain may contribute to various biogeochemical cycles, particularly in soil ecosystems where organic matter decomposition occurs. The physiological traits of Bacillus cereus BAG1X2-1 make it a candidate for further exploration in studies of microbial ecology, particularly regarding its role in nutrient cycling and interactions with other soil microorganisms. Understanding its ecological implications could provide insights into the functional dynamics of microbial communities in diverse habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053173 AHCT00000000.1 Bac0004622 Bacillus cereus BAG1X2-3 "Bacillus cereus BAG1X2-3 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and thrives in aerobic conditions. This strain optimally grows at a temperature of 25.0°C, indicating a preference for moderate environmental temperatures. ↵↵Bacillus cereus species are commonly found in a variety of habitats, which may include soil, water, and plant surfaces, reflecting their ecological versatility. The ability of BAG1X2-3 to survive and proliferate in multiple environments suggests a potential role in nutrient cycling or interaction with other microorganisms within diverse ecosystems.↵↵The chain formation characteristic of this strain may facilitate certain ecological interactions, such as biofilm development or enhanced resistance to environmental stresses. Overall, the traits of Bacillus cereus BAG1X2-3 highlight its adaptability and potential ecological significance in various habitats where it may contribute to microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053175 AHCV00000000.1 Bac0004623 Bacillus cereus BAG4O-1 "Bacillus cereus BAG4O-1 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25.0°C and exhibits an aerobic metabolism, indicating its reliance on oxygen for growth and energy production. Found in a variety of habitats, B. cereus BAG4O-1's versatility suggests a capacity for adaptation to diverse environmental conditions. ↵↵The chain formation characteristic of this strain may confer advantages in certain ecological niches, potentially enhancing its ability to colonize surfaces or interact with other microbial communities. The aerobic nature of B. cereus BAG4O-1 further implies its role in biogeochemical cycles, particularly in oxygen-rich environments where it may contribute to organic matter decomposition. Understanding the specific ecological roles of this strain could provide insights into its interactions within microbial ecosystems, underscoring the importance of Bacillus species in maintaining ecological balance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053185 AHDF00000000.1 Bac0004624 Bacillus cereus BAG5X1-1 "Bacillus cereus BAG5X1-1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain is optimally adapted to a temperature of 25.0 °C, indicating a preference for moderate conditions that may be typical of various habitats. ↵↵Bacillus cereus species are known for their versatility and can inhabit diverse ecological niches, which may include soil, water, and plant surfaces. The ability of BAG5X1-1 to grow in multiple habitats suggests an ecological adaptability that allows it to exploit a range of resources and environmental conditions. This characteristic could play a significant role in its interactions within microbial communities, including potential roles in nutrient cycling and organic matter degradation.↵↵Understanding the physiological traits of Bacillus cereus BAG5X1-1 enhances our knowledge of its ecological functions and highlights the importance of temperature and oxygen availability in shaping its habitat preferences. The strain’s ability to form chains may also facilitate its survival and colonization in varied environments, potentially contributing to its ecological success. Further studies could elucidate the specific ecological roles of this strain in its natural habitats, contributing to our understanding of microbial dynamics in those environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053189 AHDJ00000000.1 Bac0004625 Bacillus cereus HuA2-1 "Bacillus cereus HuA2-1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 25.0 °C, suggesting a preference for moderate temperature conditions. The ability of B. cereus HuA2-1 to inhabit multiple habitats indicates its ecological versatility and adaptation to various environmental niches.↵↵Bacillus cereus species are generally known for their resilience and capacity to survive in diverse conditions, which may contribute to their presence in different ecosystems. The aerobic nature of B. cereus HuA2-1 highlights its reliance on oxygen for metabolic processes, further underscoring its potential role in aerobic decomposition and nutrient cycling in terrestrial environments.↵↵The combination of these traits suggests that B. cereus HuA2-1 could be involved in various ecological interactions, possibly contributing to soil health and organic matter breakdown. Its ability to thrive in multiple habitats may also indicate a role in biogeochemical cycles, although more specific ecological interactions remain to be elucidated." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053201 AHDV00000000.1 Bac0004626 Bacillus cereus HuA2-9 "Bacillus cereus HuA2-9 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain displays optimal growth at a temperature of 25.0°C, suggesting a preference for moderate thermal conditions. B. cereus is widely recognized for its ecological versatility, inhabiting a range of environments, which may include soil, water, and various organic substrates.↵↵The ability to form chains could be indicative of its growth dynamics and potential interactions within microbial communities in diverse habitats. Given its aerobic nature, B. cereus HuA2-9 likely engages in metabolic processes that require oxygen, which may influence its ecological role in nutrient cycling and interactions with other microorganisms. ↵↵The adaptability of B. cereus HuA2-9 to multiple habitats underscores its potential significance in various ecological contexts, including its contributions to soil health and organic matter decomposition. This versatility may also reflect an evolutionary strategy that allows the species to thrive in fluctuating environments, making it an interesting subject for studies on microbial ecology and adaptability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053204 AHDY00000000.1 Bac0004627 Bacillus cereus HuA3-9 "Bacillus cereus HuA3-9 is a Gram-positive, rod-shaped bacterium that typically arranges in chains. This microorganism thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As an aerobic organism, B. cereus HuA3-9 requires oxygen for its metabolic processes, which influences its habitat selection and ecological interactions.↵↵This strain of B. cereus is found in multiple habitats, suggesting a versatile lifestyle that may include soil, water, and possibly plant surfaces. The ability to colonize diverse environments may contribute to its adaptability and resilience in varying ecological niches. The chain formation observed in this species can be indicative of its growth dynamics, which may enhance its ability to access nutrients and compete with other microorganisms in its habitat.↵↵The traits of B. cereus HuA3-9 highlight its potential role in various ecological processes, including nutrient cycling and interactions with other microbial communities. Its aerobic nature and optimal growth temperature further suggest that it may play a significant role in aerobic decomposition processes within its habitats, thereby contributing to the overall health and functionality of the ecosystems it inhabits. Understanding the characteristics of Bacillus cereus HuA3-9 can provide insights into its ecological roles and potential applications in biotechnology or environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053205 AHDZ00000000.1 Bac0004628 Bacillus cereus HuB1-1 "Bacillus cereus HuB1-1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. Optimal growth occurs at a temperature of 25.0°C, indicating a preference for moderate conditions. This strain is part of the diverse Bacillus cereus group, which is known for its ability to inhabit a variety of ecological niches.↵↵The habitat of Bacillus cereus HuB1-1 is described as multiple, suggesting a versatile adaptability to different environments, which may include soil, water, and organic matter. Such adaptability is characteristic of many Bacillus species, allowing them to play significant roles in nutrient cycling and soil health.↵↵The aerobic nature of Bacillus cereus HuB1-1 implies that it relies on oxygen for metabolic processes, which may influence its distribution and ecological interactions in environments where oxygen levels fluctuate. This trait could position the strain as a key player in aerobic decomposition processes, potentially contributing to the breakdown of organic materials in its habitats.↵↵Understanding the growth characteristics and ecological potential of Bacillus cereus HuB1-1 paves the way for further exploration of its role in various ecosystems, particularly in relation to its contributions to nutrient cycling and microbial community dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053207 AHEB00000000.1 Bac0004629 Bacillus cereus HuB13-1 "Bacillus cereus HuB13-1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for moderate conditions, which may reflect its adaptability to various habitats. As a member of the Bacillus genus, B. cereus HuB13-1 is likely to possess the ability to form endospores, a trait commonly associated with this group, enabling it to survive in fluctuating environmental conditions.↵↵The habitat diversity associated with this strain indicates its ecological versatility, allowing it to inhabit multiple environments, including soil, water, and possibly plant surfaces. Such adaptability may facilitate its interactions within microbial communities, contributing to nutrient cycling and potentially influencing the microbiomes of its habitats.↵↵Further research into B. cereus HuB13-1 could elucidate its role in various ecosystems, particularly in the context of its aerobic metabolism, which may enhance the degradation of organic matter and support its ecological function. Understanding the specific environmental parameters that favor its growth and activity could provide insights into the ecological dynamics of Bacillus species in diverse habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053208 AHEC00000000.1 Bac0004630 Bacillus cereus K-5975c "Bacillus cereus K-5975c is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in various habitats. This strain, belonging to the Bacillus genus, is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. It exhibits optimal growth at a temperature of 25.0°C, which suggests a preference for moderate environmental conditions.↵↵Like other members of the Bacillus cereus group, K-5975c's ability to form chains may facilitate its survival and dissemination in diverse ecological niches. The strain's adaptability to multiple habitats points to its potential versatility in different environmental settings, such as soil, decaying organic matter, or other nutrient-rich environments where aerobic conditions prevail.↵↵While the specific ecological roles of Bacillus cereus K-5975c remain to be fully elucidated, its traits suggest a capacity for nutrient cycling and potential interactions within microbial communities. This bacterium may contribute to the breakdown of organic materials, thereby playing a role in ecosystem functioning. Further investigation into its metabolic pathways and interactions with other organisms could yield valuable insights into its ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053217 AHEL00000000.1 Bac0004631 Bacillus cereus MC118 "Bacillus cereus MC118 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This microorganism is an aerobic organism, requiring oxygen for its metabolic processes, and has an optimal growth temperature of 25.0°C. B. cereus MC118 is known to inhabit multiple environments, showcasing its adaptability to various ecological niches.↵↵The rod shape and chain arrangement of B. cereus MC118 are characteristic of the Bacillus genus, which is often associated with soil and other diverse habitats. The organism's aerobic nature suggests that it plays a role in the decomposition of organic materials, potentially contributing to nutrient cycling within its ecosystems. Furthermore, the ability to thrive at an optimal temperature of 25.0°C indicates that B. cereus MC118 may be well-suited to environments that are temperate or typical of decaying organic matter.↵↵Understanding the traits of B. cereus MC118 enhances our knowledge of microbial diversity and resilience in various habitats. Its adaptability and functional role in nutrient cycling underscore the importance of such bacteria in maintaining ecological balance and promoting the health of their environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053218 AHEM00000000.1 Bac0004632 Bacillus cereus MC67 "Bacillus cereus MC67 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This microbe thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. B. cereus species are known to inhabit diverse ecological niches, indicating a broad adaptability to various habitats. ↵↵The chain arrangement of B. cereus MC67 may facilitate cooperative behavior among cells, potentially enhancing survival in fluctuating conditions. As an aerobic organism, it requires oxygen for growth, which may influence its distribution in environments where oxygen availability varies. The ability of B. cereus MC67 to thrive in multiple habitats highlights its ecological versatility and potential roles in different microbial communities.↵↵This adaptability may allow B. cereus MC67 to participate in nutrient cycling within its ecosystem, contributing to soil health or interacting with other microbial life forms. Understanding the ecological roles of such microorganisms is crucial for appreciating their contributions to environmental processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053219 AHEN00000000.1 Bac0004633 Bacillus cereus VD014 "Bacillus cereus VD014 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This microorganism exhibits optimal growth at a temperature of 25.0°C, indicating a preference for moderate thermal conditions. B. cereus species are known for their versatility, as they inhabit a wide range of environments, which may include soil, water, and plant materials. ↵↵The ability to form chains is a notable characteristic of this species, which can influence its behavior in various ecological settings. As an aerobe, B. cereus VD014 requires oxygen for growth, suggesting an adaptation to environments where oxygen is readily available. The ability to thrive in diverse habitats may contribute to its ecological resilience and potential interactions with other microorganisms in its environment.↵↵Understanding the growth conditions and structural traits of B. cereus VD014 can provide insights into its role within microbial communities, particularly in environments where nutrient cycling and decomposition processes occur. This adaptability might allow B. cereus VD014 to play a significant role in organic matter breakdown, contributing to nutrient availability in its ecological niche." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053223 AHER00000000.1 Bac0004634 Bacillus cereus VD115 "Bacillus cereus VD115 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen to grow. Its ability to inhabit multiple environments suggests a versatile metabolic capability, allowing it to adapt to various ecological niches.↵↵The chain formation of Bacillus cereus VD115 may facilitate its survival and propagation in diverse habitats, potentially enhancing its ability to withstand environmental stresses. The organism's aerobic nature further implies a reliance on oxygen-rich environments, which can influence its distribution and ecological interactions. ↵↵Given these traits, Bacillus cereus VD115 may play a significant role in nutrient cycling within its habitats, contributing to the decomposition of organic matter and influencing microbial community dynamics. Its adaptability to different environments underscores the ecological importance of this strain, highlighting the interconnectedness of microbial life and its surrounding ecosystem." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053230 AHEY00000000.1 Bac0004635 Bacillus cereus VD133 "Bacillus cereus VD133 is a Gram-positive, rod-shaped bacterium that commonly arranges itself in chains. This microbe thrives in a variety of habitats, indicating its adaptability to different environmental conditions. Its optimal growth temperature is 25.0°C, suggesting a preference for moderate temperatures, which may facilitate its survival in diverse ecological niches. As an aerobe, Bacillus cereus VD133 requires oxygen for growth, positioning it within environments that provide sufficient oxygenation.↵↵The presence of this bacterium in multiple habitats highlights its potential versatility and ecological significance. Its ability to form chains may enhance its survival by facilitating nutrient acquisition and resilience in fluctuating conditions. Overall, Bacillus cereus VD133 exemplifies the ecological adaptability of the Bacillus genus, which is notable for its capacity to thrive in various environments while maintaining specific physiological traits." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053233 AHFB00000000.1 Bac0004636 Bacillus cereus VD146 "Bacillus cereus VD146 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C and is known to inhabit a variety of environments, suggesting a degree of ecological versatility. The filamentous arrangement of cells may contribute to its ability to colonize diverse substrates, which aligns with its adaptability in various habitats.↵↵As an aerobic bacterium, B. cereus VD146 requires oxygen for its metabolic processes, potentially influencing its distribution in environments where oxygen is readily available. This trait may facilitate its growth in soil, decaying organic matter, or other oxygen-rich ecosystems. Given its ability to thrive in multiple habitats, B. cereus VD146 may play a role in nutrient cycling and organic matter decomposition, reflecting the ecological significance of Bacillus species in maintaining soil health and fertility.↵↵Understanding the ecological roles of strains like B. cereus VD146 can provide insights into microbial interactions within their environments and their potential applications in biotechnology or bioremediation." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053236 AHFE00000000.1 Bac0004637 Bacillus cereus VD154 "Bacillus cereus VD154 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its reliance on oxygen for growth and metabolism. ↵↵Bacillus cereus species, including strain VD154, are commonly found in diverse environments, which may include soil, vegetation, and various ecological niches, reflecting their adaptability and resilience. The ability of this strain to form chains may play a role in its ecological interactions, potentially influencing its nutrient acquisition strategies and competitive dynamics in various habitats.↵↵This bacterium's aerobic nature suggests it may contribute to the cycling of organic matter and nutrients in its environments, particularly in aerobic conditions where oxygen is readily available. Understanding the specific roles and behaviors of Bacillus cereus VD154 in its natural habitat could provide insights into its ecological significance and potential contributions to microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053238 AHFG00000000.1 Bac0004638 Bacillus cereus VD166 "Bacillus cereus VD166 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic growth. This microorganism thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. B. cereus species, including strain VD166, are known to inhabit diverse environments, indicating a potential versatility in adapting to various ecological niches.↵↵The chain arrangement of cells may facilitate cooperative growth and enhanced survival in fluctuating conditions, which is a characteristic feature of some Bacillus species. The aerobic nature of B. cereus VD166 implies that it requires oxygen for its metabolic processes, further influencing its habitat preferences and ecological interactions. ↵↵Understanding the ecological role of Bacillus cereus VD166 could yield insights into its contributions to nutrient cycling and its potential interactions with other microbial communities in its environment. The adaptability of this strain to multiple habitats underscores its significance in ecological dynamics, possibly influencing soil health and plant-microbe interactions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053240 AHFI00000000.1 Bac0004639 Bacillus cereus VD184 "Bacillus cereus VD184 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen to sustain metabolic processes. ↵↵Bacillus cereus is known to inhabit diverse environments, which suggests a notable adaptability to various ecological niches. The presence of multiple habitats may reflect its ability to form endospores, a characteristic feature of the Bacillus genus that allows survival in adverse conditions. This adaptability may also facilitate interactions within microbial communities, potentially influencing nutrient cycling and ecological dynamics.↵↵The aerobic nature of Bacillus cereus VD184 implies that it may play roles in aerobic decomposition processes, contributing to the breakdown of organic material in its environment. Understanding the specific habitats and ecological roles of this strain could provide insights into its potential applications in biotechnology or environmental microbiology, particularly in contexts where aerobic processes are beneficial." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053242 AHFK00000000.1 Bac0004640 Bacillus cereus VD200 "Bacillus cereus VD200 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This microbe is versatile in its habitat, thriving in a variety of environments, which may reflect its adaptability and metabolic flexibility. The optimal growth temperature for Bacillus cereus VD200 is around 25.0°C, suggesting that it may be well-suited for temperate conditions. ↵↵As a member of the Bacillus genus, this strain exhibits characteristics common to its relatives, including the formation of endospores, although specific details regarding sporulation in VD200 are not provided in the available data. The presence of chains in its cellular arrangement may contribute to its survival strategy in fluctuating environments, potentially enhancing its ability to resist adverse conditions. ↵↵Given its aerobic nature, Bacillus cereus VD200 likely plays a role in biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition in its natural habitats. This capability to thrive in multiple habitats highlights its ecological significance and suggests potential applications in bioremediation or as a biofertilizer. Overall, the adaptability and ecological role of Bacillus cereus VD200 underscore the importance of studying its traits to better understand its contributions to microbial communities and ecosystem functioning." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053244 AHFM00000000.1 Bac0004641 Arcobacter cloacae Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter cloacae 1054034 PDJZ00000000.1 Bac0004642 Acetobacteraceae bacterium AT-5844 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacteraceae bacterium AT-5844 1054213 AGEZ00000000.1 Bac0004643 Candidatus Paraburkholderia kirkii UZHbot1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Candidatus Paraburkholderia kirkii 1055526 CAFE00000000.1 Bac0004644 Helicobacter pylori Puno120 "Helicobacter pylori Puno120 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and singular cell arrangement. This organism thrives optimally at 37.0°C, indicating a preference for the warm conditions typically found in the human stomach, its primary habitat. H. pylori is known for its association with host environments, where it can inhabit gastric mucosa.↵↵As a microaerophilic species, H. pylori Puno120 requires reduced levels of oxygen for growth, which aligns with its specialized adaptation to the gastric niche, where oxygen levels are lower than in the atmosphere. The distinct morphology of this bacterium, coupled with its ability to survive in the acidic environment of the stomach, suggests a well-evolved strategy for colonization and persistence in its host. ↵↵An intriguing aspect of H. pylori Puno120 is its potential role in influencing the gastric microbiome and, by extension, host health. Given its adaptation to the microaerophilic environment of the stomach, the strain may interact with other microbial communities present in the gastrointestinal tract, contributing to the complex dynamics of microbial colonization and host-microbe interactions. Further studies may elucidate the specific ecological niches occupied by H. pylori Puno120 and its impact on gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1055528 NC_017377.1 Bac0004645 Helicobacter pylori Puno135 "Helicobacter pylori Puno135 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in microaerophilic conditions, requiring reduced oxygen levels for optimal growth. Its optimal temperature for growth is approximately 37.0°C, which aligns with the typical body temperature of its host organisms, indicating its adaptation to a host-associated habitat.↵↵Helicobacter pylori is well-known for its association with the gastric mucosa of humans and other mammals, where it plays a significant role in various gastrointestinal processes. The microaerophilic nature of Helicobacter pylori Puno135 suggests a specialized metabolism that allows it to survive in the gastric environment, where oxygen levels are lower than in the external atmosphere. This adaptability may contribute to its persistence in the gastric niche, potentially influencing local microbial communities and overall host health.↵↵The unique ecological insight into Helicobacter pylori Puno135 lies in its ability to survive and thrive in the harsh acidic conditions of the stomach, which may also serve as a selective pressure for the development of its specialized metabolic pathways. Understanding the traits of Helicobacter pylori Puno135 can provide valuable information for studies on microbial adaptation and interactions within host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1055529 NC_017379.1 Bac0004646 Helicobacter pylori SNT49 "Helicobacter pylori SNT49 is a Gram-negative bacterium characterized by its spirilla shape and arrangement in singles. This microbe exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels, which is typical for many gastrointestinal pathogens. H. pylori SNT49 has an optimal growth temperature of approximately 37.0°C, aligning with the human body temperature, underscoring its adaptation to a host-associated habitat.↵↵As a member of the Helicobacter genus, H. pylori SNT49 is known to inhabit the gastric mucosa of humans and other animals, where it can establish a persistent infection. The unique morphology of this spirilla may contribute to its motility and ability to colonize the viscous environment of the stomach. Such adaptations are crucial for its survival in the acidic gastric milieu.↵↵Understanding the specific traits of H. pylori SNT49 enhances our knowledge of its ecological niche and potential interactions within the host. The microaerophilic nature and spirilla morphology suggest that this strain may play a distinct role in the gastrointestinal microbiome, potentially influencing local pH levels and interactions with other microbial communities. Further investigation into its ecological functions could provide insights into its contributions to gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1055530 NC_017380.1 Bac0004647 Helicobacter pylori Aklavik86 "Helicobacter pylori Aklavik86 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions typically found in the gastric environment of its host. H. pylori is known to inhabit the gastrointestinal tract, specifically the stomach lining, where it establishes a niche in a host-associated habitat.↵↵The microaerophilic nature of H. pylori Aklavik86 suggests that it requires low levels of oxygen for growth, which is consistent with the oxygen-poor environment of the gastric mucosa. The spiral morphology of this bacterium is thought to confer advantages in motility, allowing it to navigate the viscous mucus of the stomach lining. This adaptive trait may facilitate its colonization and persistence in a challenging environment.↵↵Understanding the physiological and structural characteristics of Helicobacter pylori Aklavik86 may provide insights into its ecological role within the host's microbiome and its potential interactions with other microbial communities. The capacity of this strain to thrive in a microaerophilic habitat suggests a specialized adaptation that may influence the overall health and microbial balance of the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1055532 NC_019564.1 Bac0004648 Escherichia coli O145 str. RM9872 "Escherichia coli O145 str. RM9872 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as singles. This strain, like other members of the species, is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli O145 str. RM9872 has an optimal growth temperature of 37.0°C, which corresponds to the body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵The microbiological characteristics of E. coli O145 str. RM9872 suggest its potential role in the gastrointestinal tract of its host, where it may contribute to various metabolic processes. As a facultative anaerobe, it can switch between fermentation and respiration based on the availability of oxygen, which may provide a competitive advantage in fluctuating environmental conditions within the host. This adaptability could also play a role in its interactions with the host microbiome and other microbial communities.↵↵Understanding the specific traits of E. coli O145 str. RM9872 may provide insights into its ecological niche and functional roles within host-associated environments. Further research could elucidate its contributions to host metabolism or potential interactions with other gut microbiota, reinforcing the complexity and interdependence of microbial life in the gastrointestinal ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1055544 NZ_CP028380.1 Bac0004649 Photobacterium marinum str. AK15 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium marinum 1056511 AMZO00000000.1 Bac0004650 Azospirillum baldaniorum "Azospirillum baldaniorum is a Gram-negative bacterium notable for its role in promoting plant growth and enhancing soil fertility. This microbe is part of the genus Azospirillum, which is recognized for its associative symbiotic relationships with a variety of plant species. A. baldaniorum has been of particular interest in agricultural microbiology due to its potential to improve crop yields, primarily through nitrogen fixation and the production of growth-promoting substances.↵↵The Gram-negative cell wall structure of A. baldaniorum is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural composition contributes to the bacterium's resilience in various environmental conditions, allowing it to thrive in diverse soils while interacting with plant roots. ↵↵Recent studies have also highlighted the beneficial effects of A. baldaniorum on root development, suggesting that it may influence root architecture through the modulation of plant hormone levels. These interactions may not only enhance nutrient uptake for the host plants but also promote overall plant health and stress resistance.↵↵Given its beneficial traits, A. baldaniorum presents promising applications in sustainable agriculture, particularly in the development of biofertilizers. Its ability to form associations with plants underscores the importance of microbial communities in soil health and crop productivity, revealing the intricate connections between soil microbiology and agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum baldaniorum negative 1 1064539 NC_016596.1 Bac0004651 Rickettsia asembonensis str. NMRCii Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia asembonensis aerobic 1068590 NZ_CP011517.1 Bac0004652 Amycolatopsis methanolica 239 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis methanolica 1068978 NZ_CP009110.1 Bac0004653 Nitratiruptor tergarcus DSM 16512 "Nitratiruptor tergarcus DSM 16512 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolism, thriving optimally at a temperature of 45.0°C. This organism is non-spore-forming, which suggests a reliance on other survival strategies in its environment. The ability to grow under both aerobic and anaerobic conditions indicates a versatile metabolic capacity, allowing it to adapt to varying levels of oxygen availability in its habitat.↵↵The physiological traits of Nitratiruptor tergarcus may facilitate its role in biogeochemical cycles, particularly in environments where nitrate reduction is prevalent. Its optimal growth temperature suggests a preference for moderately thermophilic conditions, which are often found in specific natural habitats such as hot springs or thermally influenced aquatic systems. This adaptability not only underscores its potential ecological significance but also highlights its utility in biotechnological applications, particularly in processes involving nitrogen cycling.↵↵Understanding the metabolic pathways and environmental conditions that favor Nitratiruptor tergarcus could provide insights into microbial community dynamics in thermophilic ecosystems and their contributions to nutrient cycling in extreme environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitratiruptor Nitratiruptor tergarcus Gram-negative rod non-motile facultative aerobe/anaerobe 45 thermophilic non-spore-forming 1069081 FWWZ00000000.1 Bac0004654 Neisseria meningitidis NM2795 "Neisseria meningitidis NM2795 is a Gram-negative, aerobic bacterium characterized by its cocci shape and typical arrangement in pairs. This organism thrives optimally at a temperature of 35.0°C, suggesting a preference for conditions similar to those found in the human body. As a host-associated microbe, N. meningitidis NM2795 likely plays a role in the complex microbial communities within its host environment. ↵↵The pairing arrangement of the cells may contribute to its survival and interaction within host niches, potentially influencing its pathogenic potential or symbiotic relationships. Given its Gram-negative nature, the bacterium possesses an outer membrane containing lipopolysaccharides, which may be significant in its interaction with host immune responses. ↵↵Furthermore, the aerobic requirement indicates that N. meningitidis NM2795 relies on oxygen for its metabolic processes, which may limit its ecological niches to well-oxygenated environments within the host. This adaptation could provide insights into the microbe's survival strategies, suggesting that it may be particularly suited to colonizing areas within the host that are rich in oxygen supply. Overall, the traits of N. meningitidis NM2795 highlight its specialized adaptations to a host-associated lifestyle, potentially influencing its ecological role and interactions within the host's microbiome." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 1069620 ALXY00000000.1 Bac0004655 Bdellovibrio bacteriovorus str. Tiberius Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus River Tiber; Tiber River 1069642 NC_019567.1 Bac0004656 Bailinhaonella thermotolerans Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Bailinhaonella Bailinhaonella thermotolerans 1070861 QZEY00000000.1 Bac0004657 Geodermatophilus nigrescens Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus nigrescens 1070870 FQVX00000000.1 Bac0004658 Lentilactobacillus buchneri subsp. silagei CD034 "Lentilactobacillus buchneri subsp. silagei CD034 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic respiration. This strain is part of a diverse group of lactic acid bacteria known for their role in fermentation processes, particularly in silage and other agricultural applications. The facultative anaerobic nature of L. buchneri subsp. silagei CD034 allows it to thrive in varying oxygen conditions, which is advantageous in environments such as silage where oxygen levels can fluctuate.↵↵The habitat of L. buchneri subsp. silagei CD034 is noted to be multiple, indicating its adaptability and potential presence in various ecological niches. This adaptability may contribute to its effectiveness in fermentation and preservation processes, enhancing the nutritional quality and stability of silage.↵↵Understanding the characteristics of L. buchneri subsp. silagei CD034 is crucial for optimizing fermentation strategies in agriculture. Its ability to form chains may influence its metabolic interactions within microbial communities, suggesting a potential role in cooperative behaviors during fermentation. This highlights the importance of L. buchneri subsp. silagei CD034 not only as a fermentative agent but also as a participant in complex microbial ecosystems, underscoring its ecological significance in agricultural microbiology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri Positive Rod Facultative anaerobe Mesophilic Multiple Free living Chains 1071400 NC_018611.1 Bac0004659 Caballeronia grimmiae str. R27 "Caballeronia grimmiae strain R27 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0 °C. As a non-spore-forming organism, it relies on its metabolic capabilities to survive and proliferate in its ecological niche rather than employing sporulation as a means of enduring adverse conditions. ↵↵The morphological characteristics of C. grimmiae R27, particularly its rod shape and Gram-negative cell wall structure, suggest a potential adaptability to various environments, likely influencing its interactions with other microorganisms and its resilience in fluctuating conditions. The preference for aerobic respiration indicates a reliance on oxygen for energy production, which may limit its habitat to oxygen-rich environments. ↵↵The specific temperature requirement suggests a potential role in temperate ecosystems, where such conditions are prevalent. Further research could provide insights into the ecological role of C. grimmiae R27, particularly in nutrient cycling or its interactions within microbial communities. Understanding its physiological traits may help elucidate its functional contributions to its habitat, potentially highlighting its significance in the broader context of microbial ecology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia grimmiae Gram-negative rod aerobic 29 mesophilic non-spore-forming 1071679 JFHE00000000.1 Bac0004660 Riemerella columbipharyngis "Riemerella columbipharyngis is a Gram-negative, rod-shaped bacterium that exhibits microaerophilic growth characteristics, thriving optimally at 37.0°C. This organism is non-spore-forming, which suggests a reliance on stable environmental conditions for survival and propagation. Its microaerophilic nature indicates that R. columbipharyngis requires reduced levels of oxygen for optimal metabolic activity, which may play a role in its ecological niche and interactions within its environment.↵↵In terms of its potential habitat, the specific oxygen requirements and optimal growth temperature suggest that R. columbipharyngis may be adapted to specific biological environments, possibly associated with the respiratory tracts of birds, given the genus name Riemerella. This adaptation may limit its distribution to habitats where microaerophilic conditions prevail, influencing its interactions with other microbial communities and its role in the ecosystem. Understanding these traits can provide insight into how R. columbipharyngis might participate in ecological processes, including nutrient cycling and symbiotic relationships within its host environment." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella columbipharyngis Gram-negative rod non-motile microaerophile 37 mesophilic non-spore-forming 1071918 FNAS00000000.1 Bac0004661 Escherichia coli O7:K1 str. CE10 "Escherichia coli O7:K1 str. CE10 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as individual cells. This strain is a facultative anaerobe, allowing it to thrive in varied oxygen conditions, which is advantageous for its survival in diverse host-associated habitats. The optimal growth temperature for E. coli O7:K1 str. CE10 is 37.0°C, aligning with the physiological temperature of many mammalian hosts, suggesting its adaptation to a warm-blooded environment.↵↵Given its habitat, E. coli O7:K1 str. CE10 may play a role in the complex microbial ecosystems associated with its hosts. While specific pathogenicity traits are not provided, the strain's association with host organisms suggests a potential for interaction with the host microbiome, influencing both health and disease states. The adaptability of this strain to various oxygen levels and its preference for a host-associated habitat underscore its ecological versatility and potential significance in microbial community dynamics within animal intestines. Further exploration of this strain could yield insights into its exact role within these ecosystems and its interactions with other microbial species." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1072459 NC_017646.1 Bac0004662 Vreelandella boliviensis LC1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella boliviensis 1072583 NPEY00000000.1 Bac0004663 Candidatus Haloredivivus sp. G17 Methanobacteriati Methanobacteriota Candidatus Nanohaloarchaea Candidatus Haloredivivus sp. G17 1072681 AGNT00000000.1 Bac0004664 Prevotella nigrescens CC14M "Prevotella nigrescens CC14M is a Gram-negative anaerobic bacterium, belonging to the genus Prevotella, which is characterized by its ability to thrive in oxygen-depleted environments. This microbe exhibits typical traits associated with its genus, including a rod-shaped morphology and a notable presence in various anaerobic habitats, such as the human oral cavity and gastrointestinal tract. ↵↵As an anaerobe, Prevotella nigrescens CC14M relies on fermentation processes for energy production, utilizing organic compounds in the absence of oxygen. This metabolic adaptation allows it to occupy ecological niches that are inhospitable to aerobic organisms, contributing to the complex microbial communities found in these environments. ↵↵The presence of P. nigrescens within the microbiota may play a crucial role in maintaining microbial balance, as it participates in the breakdown of polysaccharides and other organic materials. Its ability to thrive in anaerobic conditions suggests that it may also be involved in the modulation of local pH and nutrient cycling, further impacting the dynamics of the microbial ecosystem.↵↵Overall, the characteristics of Prevotella nigrescens CC14M highlight its significance in anaerobic microbiomes and underscore the importance of anaerobic bacteria in ecosystem functions and interactions within host organisms." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella nigrescens Negative Anaerobe 1073366 AZJH00000000.1 Bac0004665 [Ruminococcus] lactaris CC59_002D "[Ruminococcus] lactaris CC59_002D is a Gram-positive coccus that belongs to the genus Ruminococcus, which is known for its role in the degradation of complex carbohydrates in the gastrointestinal tract of herbivorous animals. This microorganism exhibits a spherical shape, characteristic of cocci, and may contribute to the fermentation processes that are crucial for the digestion of fibrous plant materials.↵↵The strain CC59_002D is notable for its potential involvement in the gut microbiome, particularly in relation to the fermentation of dietary polysaccharides. The ability of Ruminococcus species to break down complex carbohydrates helps in the production of short-chain fatty acids (SCFAs), which are essential for gut health and provide energy to host cells. Additionally, the presence of such bacteria in the gut can influence the overall microbial community structure, potentially supporting the health and metabolic functions of the host.↵↵Research into the specific metabolic pathways and interactions of [Ruminococcus] lactaris CC59_002D within its ecological niche may provide insights into its role in various digestive processes and its potential benefits to the host organism. Understanding the functional contributions of this strain could enhance our knowledge of microbial ecology and its implications for nutrition and health in herbivorous diets." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter [Ruminococcus] lactaris Positive Cocci 1073376 AZJE00000000.1 Bac0004666 Bacteroides fragilis HMW 615 "Bacteroides fragilis HMW 615 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives in anaerobic environments, with an optimal growth temperature of 37.0°C, which aligns with the physiological conditions found within the human host. As a chemoorganotroph, B. fragilis HMW 615 derives its energy from organic compounds, facilitating its role in metabolic processes associated with the host's gut microbiota.↵↵The habitat of Bacteroides fragilis HMW 615 is primarily host-associated, indicating its prevalence in the intestinal tract, where it contributes to the complex microbial community. This association highlights the potential importance of B. fragilis HMW 615 in maintaining gut homeostasis, influencing nutrient absorption, and modulating the immune response within the host.↵↵Understanding the characteristics of Bacteroides fragilis HMW 615 not only sheds light on its biological functions but also underscores the significance of anaerobic bacteria in the human microbiome. The ability of this strain to thrive in low-oxygen environments and utilize organic material plays a crucial role in the overall health and functionality of the gut ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1073387 AGXR00000000.1 Bac0004667 Gordonia araii NBRC 100433 "Gordonia araii NBRC 100433 is a Gram-positive, rod-shaped bacterium that demonstrates the ability to form spores, suggesting a resilience to adverse environmental conditions. This microorganism thrives under aerobic conditions, indicating its reliance on oxygen for metabolic processes. Optimal growth occurs at a temperature of 29.0°C, positioning it within a mesophilic range that is conducive to growth in various terrestrial environments.↵↵The spore-forming capability of Gordonia araii is particularly noteworthy, as it may contribute to its survival and persistence in fluctuating ecological niches. Spore formation is a common trait among bacteria that allows for dormancy and protection against unfavorable conditions such as desiccation or nutrient limitation. This trait may enable Gordonia araii to occupy diverse habitats, potentially including soil and decaying organic materials, where it can exploit organic compounds for growth.↵↵While specific ecological roles of Gordonia araii are not detailed, its aerobic metabolism and spore-forming ability suggest a potential involvement in the degradation of organic matter, contributing to nutrient cycling in its environment. Understanding the ecological contributions of such microorganisms can provide insights into their importance in biogeochemical processes and their potential applications in bioremediation or environmental management." Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia araii Gram-positive rod non-motile aerobic 29 mesophilic spore-forming 1073574 BAEE00000000.1 Bac0004668 Streptomyces oceani Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces oceani 1075402 LJGU00000000.1 Bac0004669 Catalinimonas alkaloidigena Pseudomonadati Bacteroidota Cytophagia Cytophagales Catalimonadaceae Catalinimonas Catalinimonas alkaloidigena 1075417 FNFO00000000.1 Bac0004670 Pantoea rodasii str. DSM 26611 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea rodasii 1076549 PIQI00000000.1 Bac0004671 Pantoea rodasii str. ND03 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea rodasii 1076549 JTJJ00000000.1 Bac0004672 Allofranklinella schreckenbergeri Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Allofranklinella Allofranklinella schreckenbergeri 1076744 RDQM00000000.1 Bac0004673 Rhizobium laguerreae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium laguerreae 1076926 SJNQ00000000.1 Bac0004674 Fontimonas thermophila "Fontimonas thermophila is a Gram-negative, rod-shaped bacterium that thrives optimally at temperatures around 45.0°C and requires aerobic conditions for growth. This thermophilic organism is characterized by its non-spore-forming nature, which may influence its survival strategies in high-temperature environments. ↵↵As a member of the microbial community, F. thermophila likely plays a significant role in biogeochemical cycles, particularly in thermally rich habitats where it may contribute to organic matter decomposition and nutrient recycling. Its adaptation to elevated temperatures suggests potential metabolic pathways that differ from those of mesophilic organisms, possibly facilitating unique enzymatic reactions suited for high thermal stability.↵↵Understanding the physiological and ecological roles of Fontimonas thermophila within its environment may provide insights into the adaptations of microbial life in extreme conditions, as well as potential applications in biotechnology, such as in the development of thermophilic enzymes for industrial processes. Further studies are warranted to explore its interactions within microbial communities and its contributions to ecological functions in hot environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Fontimonas Fontimonas thermophila Gram-negative rod aerobic 45 thermophilic non-spore-forming 1076937 FOOC00000000.1 Bac0004675 Methanosphaera cuniculi str. DSM 4103 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera cuniculi 1077256 LWMS00000000.1 Bac0004676 Streptococcus oralis subsp. tigurinus str. AZ_14 "Streptococcus oralis subsp. tigurinus str. AZ_14 is a Gram-positive coccus that commonly exists in pairs and chains, demonstrating its characteristic morphology. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is typical for many members of the Streptococcus genus. Its habitat is host-associated, suggesting a close relationship with host organisms, likely contributing to its ecological niche within the oral cavity or other mucosal surfaces.↵↵The facultative anaerobic nature of S. oralis subsp. tigurinus str. AZ_14 allows it to adapt effectively to varying oxygen levels, which is essential for its survival in diverse environments within the host. This adaptability may play a role in its interactions with other microbial communities and host tissues. Given its arrangement in pairs and chains, this strain may also exhibit cooperative behaviors that facilitate nutrient acquisition and biofilm formation, which are critical for its persistence in the host-associated habitats.↵↵Overall, the unique combination of its Gram-positive structure, coccoid shape, and facultative anaerobic metabolism underscores the adaptability of S. oralis subsp. tigurinus str. AZ_14 in niche environments, potentially influencing its role in microbial ecology and host interactions. Further studies may reveal more about its specific functions and contributions to the oral microbiome and overall health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1077464 LNVG00000000.1 Bac0004677 Streptococcus oralis subsp. tigurinus "Streptococcus oralis subsp. tigurinus is a Gram-positive coccus that typically arranges itself in pairs or chains. As a facultative anaerobe, this microbe can thrive in both the presence and absence of oxygen, indicating its adaptability to varying environmental conditions within its host-associated habitats. ↵↵Streptococcus oralis subsp. tigurinus is part of the normal flora of the human oral cavity and plays a role in the complex microbial ecosystem found there. It is closely related to other members of the Streptococcus genus, contributing to the overall diversity and function of the oral microbiome. This species may be involved in various interactions with other microorganisms, which can influence oral health and disease states.↵↵Notably, the host-associated nature of S. oralis subsp. tigurinus suggests a potential for symbiotic relationships with the host, possibly aiding in the maintenance of oral homeostasis. The presence of this organism in the oral cavity underscores the importance of understanding its role in the broader context of microbial interactions and health outcomes in humans. Further investigation into its specific functions and interactions within the oral microbiome could provide valuable insights into its ecological significance and potential implications for oral health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1077464 NCUC00000000.1 Bac0004678 Streptococcus oralis subsp. tigurinus str. 859 "Streptococcus oralis subsp. tigurinus str. 859 is a Gram-positive coccus that typically appears in pairs or chains and is classified as a facultative anaerobe. This subspecies is associated with host environments, suggesting a close relationship with its host organisms. The characteristic coccoid shape and arrangement facilitate its survival in various niches within the host, potentially allowing for diverse metabolic strategies depending on the available oxygen levels.↵↵As a facultative anaerobe, S. oralis subsp. tigurinus str. 859 can adapt to both aerobic and anaerobic conditions, which is advantageous in fluctuating environments typical of host-associated habitats. This adaptability may play a role in its ecological interactions, possibly contributing to its presence in mucosal surfaces where oxygen availability can vary significantly. The ability to thrive in pairs or chains may enhance its colonization potential and biofilm formation, which are important traits for microbial communities in host-associated environments. Understanding the specific ecological roles and interactions of this subspecies within its niche can provide insights into the dynamics of host-associated microbiomes and their contributions to health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1077464 LNVH00000000.1 Bac0004679 Streptococcus oralis subsp. tigurinus str. AZ_8 "Streptococcus oralis subsp. tigurinus str. AZ_8 is a Gram-positive bacterium characterized by its cocci shape and typical arrangement in pairs and chains. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. oralis subsp. tigurinus str. AZ_8 is likely to inhabit various niches within its host, potentially contributing to the complex microbiota that plays a role in maintaining host health.↵↵The facultative anaerobic nature of this strain suggests a versatile metabolic capacity, enabling it to adapt to fluctuating oxygen levels commonly found in host-associated environments. This adaptability may facilitate its survival in diverse microenvironments, such as oral cavities, where oxygen levels can vary significantly due to microbial activity and host behavior.↵↵Given its association with hosts, further understanding of S. oralis subsp. tigurinus str. AZ_8 may provide insights into its role in microbial community dynamics and interactions within the host microbiome. Such knowledge could enhance our comprehension of how this strain contributes to the overall balance of microbial populations and their potential impacts on host health or disease states." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1077464 LNVF00000000.1 Bac0004680 Streptococcus oralis subsp. tigurinus str. osk_001 "Streptococcus oralis subsp. tigurinus str. osk_001 is a Gram-positive, facultative anaerobic coccus characterized by its occurrence in pairs and chains. This bacterium is associated with host environments, suggesting a symbiotic or commensal relationship with its host organisms. The cellular arrangement in pairs and chains is typical of the Streptococcus genus, which is known for its diverse roles in human and animal microbiomes.↵↵As a facultative anaerobe, S. oralis subsp. tigurinus str. osk_001 can adapt to varying oxygen conditions, allowing it to thrive in environments where oxygen levels fluctuate, such as in the oral cavity and other host-associated habitats. This adaptability may contribute to its prevalence in microbial communities, where it may play a role in maintaining microbial balance and influencing overall health.↵↵Further exploration of its ecological role may reveal insights into its interactions with other microbial species and its potential impact on host health. Understanding the specific niche of S. oralis subsp. tigurinus str. osk_001 within the microbiome can provide valuable information on its contributions to host-associated ecosystems, particularly in oral health, where it may influence the dynamics of microbial populations." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1077464 NZ_AP018338.1 Bac0004681 Enterococcus plantarum str. TRW2 "Enterococcus plantarum strain TRW2 is a Gram-positive, ovoid-shaped bacterium characterized by its microaerophilic growth requirement. This strain exhibits a distinct morphology typical of the Enterococcus genus, which includes spherical to ovoid cells that often appear in pairs or short chains. As a microaerophile, E. plantarum TRW2 thrives in environments with reduced oxygen levels, suggesting a potential adaptation to specific ecological niches where such conditions prevail, such as the gastrointestinal tracts of animals or fermented food products.↵↵The Gram-positive nature of this strain indicates the presence of a thick peptidoglycan layer in its cell wall, which is a hallmark of many bacteria within this classification. This structural feature contributes to its resilience in various environments and may play a role in its interaction with other microorganisms.↵↵While the specific ecological roles or applications of E. plantarum TRW2 have not been delineated, its classification within the Enterococcus group suggests potential uses in biotechnology or food fermentation processes. The presence of this strain in microaerophilic conditions may also imply its involvement in complex microbial communities where oxygen levels fluctuate, potentially influencing metabolic pathways and interactions with other microbial species. Understanding the traits of E. plantarum TRW2 may provide insights into its functional roles in both natural ecosystems and industrial applications." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus plantarum Gram-positive ovoid non-motile microaerophile 1077675 PIEU00000000.1 Bac0004682 Paracoccus zhejiangensis str. J6T Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus zhejiangensis 1077935 NZ_CP025432.1 Bac0004683 Streptomyces hundungensis str. BH38 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hundungensis 1077946 NZ_CP032698.1 Bac0004684 Pseudorhodobacter antarcticus "Pseudorhodobacter antarcticus is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 16.0°C. This psychrotolerant microbe was isolated from an Antarctic ecosystem, suggesting its adaptation to cold environments. The Gram-negative cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane, may contribute to its resilience and metabolic capabilities in such extreme conditions.↵↵Pseudorhodobacter antarcticus possesses the ability to utilize various organic compounds, which may play a role in nutrient cycling within its native habitat. Its aerobic nature indicates a reliance on oxygen for respiration, aligning with the biochemical strategies employed by many bacteria in nutrient-rich, well-oxygenated environments. The specific adaptations that allow this organism to flourish at low temperatures while maintaining metabolic activity offer insights into the broader ecological dynamics of microbial communities in polar regions.↵↵Moreover, the presence of Pseudorhodobacter antarcticus in Antarctic environments underscores the potential for microbial life to adapt to and thrive in extreme conditions, contributing to our understanding of biodiversity and biogeochemical processes in such unique ecosystems. Further research into its metabolic pathways and interactions with other microbial species could reveal additional ecological roles and biotechnological applications of this Antarctic bacterium." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudorhodobacter Pseudorhodobacter antarcticus Gram-negative rod non-motile aerobic 16 psychrotolerant 1077947 FOCO00000000.1 Bac0004685 Gordonia rubripertincta NBRC 101908 "Gordonia rubripertincta NBRC 101908 is a Gram-positive, rod-shaped bacterium classified as a thermophilic heterotroph, capable of thriving in elevated temperatures. This microbe is categorized as an obligate aerobe, requiring oxygen for its metabolic processes, which makes it adept at using aerobic respiration to derive energy from organic compounds. Gordonia rubripertincta predominantly colonizes soil and water environments, showcasing its adaptability to various ecological niches.As a Gram-positive organism, Gordonia rubripertincta possesses a thick peptidoglycan layer in its cell wall, contributing to its integrity and resilience against environmental stresses. Its rod shape allows for efficient nutrient uptake and mobility in aqueous habitats, fostering competitive advantages in nutrient-rich environments. Being thermophilic, it prefers warmer temperatures, which dictates its habitation in thermal springs or heated ecosystems, where few other microbes can survive.As a heterotroph, Gordonia rubripertincta plays a crucial role in the degradation of complex organic materials, contributing to nutrient cycling within its ecosystem. Its obligate aerobic nature means that it thrives in oxygen-rich environments, presenting unique metabolic pathways that could be harnessed for biotechnological applications, such as bioremediation of contaminated sites, particularly those affected by organic pollutants. Furthermore, this microbe is known for its capacity to degrade aromatic compounds, making it a particularly valuable candidate in biotechnological endeavors aimed at waste treatment. Its efficient metabolic capabilities and resilience in extreme conditions merit further research, especially in the development of sustainable practices for environmental management and pollution remediation." Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia rubripertincta Positive Aerobe 1077975 BAHB00000000.1 Bac0004686 Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia polyisoprenivorans 1077976 BAEI00000000.1 Bac0004687 Seleniivibrio woodruffii str. DSM 24984 "Seleniivibrio woodruffii str. DSM 24984 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 32.0°C. This organism is part of the diverse microbial community that plays a role in biogeochemical cycles, particularly in environments where anaerobic processes dominate.↵↵As a member of the genus Seleniivibrio, it is expected to participate in the reduction of selenium compounds, which may have implications for selenium cycling in its native habitat. The anaerobic requirement indicates that S. woodruffii likely inhabits environments such as sediments or other anoxic settings where oxygen is limited. The optimal growth temperature suggests that it is well-adapted to mesophilic conditions, which are common in many natural ecosystems.↵↵Understanding the metabolic capabilities and ecological roles of Seleniivibrio woodruffii str. DSM 24984 could provide insights into its potential applications in bioremediation, particularly in the detoxification of selenium-laden environments. The study of this strain may also contribute to the broader understanding of microbial interactions within anaerobic communities and the cycling of essential elements in various ecosystems." Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Seleniivibrio Seleniivibrio woodruffii Gram-negative rod anaerobic 32 mesophilic non-spore-forming 1078050 SMGG00000000.1 Bac0004688 Paenisporosarcina sp. HGH0030 "Paenisporosarcina sp. HGH0030 is a psychrophilic, sporulating microbe that has garnered interest for its potential applications in bioremediation and bioprospecting. Isolated from cold environments, this organism thrives at low temperatures, showcasing remarkable adaptability to extreme conditions. The ability to sporulate enables Paenisporosarcina sp. HGH0030 to endure harsh environments and nutrient scarcity, allowing it to survive in fluctuating ecological niches. While detailed metabolic and energy acquisition mechanisms remain unidentified, psychrophilic microbes like Paenisporosarcina sp. often possess enzymes that are functionally efficient at lower temperatures, offering potential for industrial processes requiring low-temperature catalysts. This characteristic makes them invaluable for biotechnological applications, such as the development of cold-adapted enzymes for biocatalysis in food and pharmaceutical industries. The habitat from which Paenisporosarcina sp. HGH0030 was derived suggests it plays a role in nutrient cycling within its ecosystem, particularly in places where organic matter decomposition is influenced by cold conditions. Its unique adaptations and ecological interactions underline the importance of studying psychrophiles, as they house unique genetic and biochemical properties that can contribute to our understanding of environmental resilience and biogeochemical processes. Ultimately, the study of Paenisporosarcina sp. HGH0030 and similar microorganisms not only expands our knowledge of microbial life in extreme environments but also provides insights into the evolutionary adaptations that allow life to persist in some of the most challenging habitats on Earth." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Paenisporosarcina Paenisporosarcina sp. HGH0030 No 1 Psychrophilic Sporulating 1078085 AGEQ00000000.1 Bac0004689 Corynebacterium sp. HFH0082 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HFH0082 1078764 AGEM00000000.1 Bac0004690 Pseudarcicella hirudinis "Pseudarcicella hirudinis is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This organism exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. As a member of the diverse microbial community, Pseudarcicella hirudinis may play a role in various ecological niches, particularly those associated with aerobic environments where organic matter degradation occurs.↵↵The rod shape of Pseudarcicella hirudinis may facilitate motility and nutrient uptake in its environment, although specific mechanisms of movement or nutrient acquisition are not detailed in the available traits. The Gram-negative cell wall structure is indicative of a complex membrane system, which may contribute to the organism's adaptability in fluctuating environmental conditions.↵↵Understanding the growth characteristics of Pseudarcicella hirudinis could provide insights into its ecological roles, particularly in biogeochemical cycles where aerobic degradation processes are critical. Its ability to thrive at moderate temperatures may also suggest potential interactions with other microorganisms in similar habitats, highlighting the importance of temperature in microbial community dynamics. Further investigations into its metabolic pathways and interactions with other species could elucidate its ecological significance." Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Pseudarcicella Pseudarcicella hirudinis Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 1079859 FOXH00000000.1 Bac0004691 Streptomyces chartreusis NRRL 3882 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces chartreusis 29 mesophilic 1079985 NZ_LT963352.1 Bac0004692 Corynebacterium glutamicum ATCC 14067 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum 1079988 AGQQ00000000.2 Bac0004693 Leptolyngbya sp. O-77 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. O-77 1080068 NZ_AP017367.1 Bac0004694 Hyunsoonleella pacifica str. SW033 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Hyunsoonleella Hyunsoonleella pacifica 1080224 SIRS00000000.1 Bac0004695 Candidatus Aquiluna sp. IMCC13023 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aquiluna Candidatus Aquiluna sp. IMCC13023 1081644 AJKR00000000.1 Bac0004696 Pseudomonas putida B6-2 "Pseudomonas putida B6-2 is a Gram-negative, rod-shaped bacterium that typically exists as individual cells in various environments, including soil and wastewater. This strain is a heterotroph, utilizing organic compounds as its primary energy source, which allows it to thrive in nutrient-rich environments often found in contaminated soils and effluent. As a facultative organism, P. putida B6-2 can adapt to both aerobic and anaerobic conditions, reflecting its versatility and ability to survive in fluctuating environmental oxygen levels.↵↵The ability of Pseudomonas putida B6-2 to metabolize a wide range of organic compounds positions it as an important player in bioremediation efforts, where it may contribute to the degradation of pollutants in wastewater and soil systems. Its inherent adaptability to diverse ecological niches highlights the potential role of this strain in nutrient cycling and environmental restoration. Understanding the metabolic pathways and ecological interactions of P. putida B6-2 could further illuminate its utility in sustainable environmental management practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 1081940 NZ_CP015202.1 Bac0004697 Hydrogenispora ethanolica str. LX-B Bacillati Bacillota Clostridia Clostridiales Heliobacteriaceae Hydrogenispora Hydrogenispora ethanolica anaerobic 1082276 SLUN00000000.1 Bac0004698 Pelagibacterium halotolerans B2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Pelagibacterium Pelagibacterium halotolerans 1082931 NC_016079.1 Bac0004699 Mesorhizobium amorphae CCNWGS0123 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium amorphae 1082933 AGSN00000000.1 Bac0004700 halophilic archaeon J07HX64 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales halophilic archaeon J07HX64 1085028 AGCY00000000.1 Bac0004701 halophilic archaeon J07HB67 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales halophilic archaeon J07HB67 1085029 AGCZ00000000.1 Bac0004702 Bacillus cereus VDM006 "Bacillus cereus VDM006 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25°C, indicating its preference for moderate environmental conditions. The bacterium's habitat is diverse, suggesting adaptability to various ecological niches.↵↵As a member of the Bacillus genus, B. cereus VDM006 shares common characteristics with its relatives, including the ability to form endospores, which may contribute to its survival in different environments. The presence of chains in its cell arrangement may influence its physiological interactions within its habitat, potentially affecting nutrient acquisition and competitive dynamics with other microorganisms.↵↵The aerobic nature of B. cereus VDM006 implies that it requires oxygen for growth, which could limit its prevalence in anoxic environments but allows it to thrive in well-aerated soils and other oxygen-rich habitats. This strain's adaptability to multiple habitats and its moderate temperature preference suggest a versatile role within its ecosystem, possibly participating in nutrient cycling and contributing to soil health. The unique combination of traits in B. cereus VDM006 highlights its potential significance in environmental microbiology, particularly in understanding the dynamics of microbial communities in various ecological contexts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1085379 AHFT00000000.1 Bac0004703 Leptospira interrogans serovar Bataviae str. HAI135 "Leptospira interrogans serovar Bataviae strain HAI135 is a Gram-negative, spirilla-shaped bacterium that exhibits aerobic respiration and thrives optimally at a temperature of 28.0°C. This strain is a member of the Leptospira genus, which is known for its helical morphology and motility, characteristics that are typical of spirochetes.↵↵As a host-associated microbe, L. interrogans serovar Bataviae str. HAI135 is likely to inhabit environments closely associated with its host, suggesting a potential relationship with specific animal species or environmental niches that facilitate its survival and propagation. The preference for an aerobic lifestyle indicates that this strain requires oxygen for its metabolic processes, which aligns with its ecological adaptations to environments where oxygen is available.↵↵The optimal growth temperature of 28.0°C provides insight into the ecological conditions favorable for this strain, possibly reflecting its adaptation to temperate climates or specific habitats where such temperatures are prevalent. Given its association with hosts, this strain may be involved in complex interactions within microbial communities, which can influence its behavior and ecological role.↵↵Further research into the specific interactions and ecological dynamics of L. interrogans serovar Bataviae str. HAI135 could enhance our understanding of its environmental adaptability and its role within host-associated microbiomes." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1085538 AHOI00000000.2 Bac0004704 Leptospira noguchii serovar Autumnalis str. ZUN142 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira noguchii 1085540 AHOP00000000.2 Bac0004705 Brumicola nitratireducens FR1064 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Brumicola Brumicola nitratireducens 1085623 NC_016041.1 Bac0004706 Francisella persica ATCC VR-331 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella persica 1086726 NZ_CP013022.1 Bac0004707 Leptospira weilii str. LNT 1234 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira weilii 1088541 AHNC00000000.2 Bac0004708 Novosphingobium pentaromativorans US6-1 "Novosphingobium pentaromativorans US6-1 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0 °C. This microbe is part of the Novosphingobium genus, which is known for its metabolic versatility. The rod shape is characteristic of many bacteria within this group, enabling a range of adaptive behaviors in various environments.↵↵The Gram-negative cell wall structure of N. pentaromativorans US6-1 is significant, as it typically confers resistance to certain antibiotics and plays a crucial role in the organism's interaction with its environment. While specific details regarding its metabolic pathways or ecological niches are not provided, the genus Novosphingobium is often associated with the degradation of complex aromatic compounds, suggesting that N. pentaromativorans US6-1 may possess similar capabilities.↵↵The optimal growth temperature of 29.0 °C indicates that this bacterium is likely adapted to mesophilic environments, which are common in temperate regions. This temperature preference may influence its ecological role, potentially allowing it to thrive in environments where organic matter is abundant and temperatures are moderate, such as soil or water systems where aromatic pollutants are present.↵↵Overall, Novosphingobium pentaromativorans US6-1 exemplifies the adaptability of Gram-negative bacteria to specific environmental conditions, highlighting its potential significance in bioremediation processes involving aromatic compounds." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium pentaromativorans Gram-negative rod non-motile 29 mesophilic 1088721 AGFM00000000.1 Bac0004709 Commensalibacter intestini A911 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Commensalibacter Commensalibacter intestini 1088868 AGFR00000000.1 Bac0004710 Gluconobacter morbifer G707 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter morbifer 1088869 AGQV00000000.1 Bac0004711 Winogradskyella jejuensis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella jejuensis 1089305 FQWS00000000.1 Bac0004712 Bacillus subtilis subsp. subtilis str. SC-8 "Bacillus subtilis subsp. subtilis str. SC-8 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, which enhances its survival in various environments. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic conditions, which is indicative of its versatile metabolic capabilities. The optimal growth temperature for B. subtilis SC-8 is 25.0°C, suggesting it is well-adapted to mesophilic environments.↵↵Bacillus subtilis, including this strain, is commonly found in host-associated habitats, indicating its potential role in symbiotic relationships or as a resident microbe within specific ecological niches. The bacterium's sporulation ability is particularly significant as it enables the formation of endospores, which are resistant to extreme conditions, thus facilitating its persistence in various environments.↵↵Overall, the traits of B. subtilis subsp. subtilis str. SC-8 highlight its ecological adaptability and potential functional roles in nutrient cycling or as a contributor to host health, aligning with the general characteristics of the Bacillus genus in soil and host-associated ecosystems. The sporulation process not only aids in survival but may also play a role in the dissemination of beneficial traits among microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1089443 AGFW00000000.1 Bac0004713 Gordonia sputi NBRC 100414 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sputi microaerophile 1089453 BAFC00000000.1 Bac0004714 Mobilicoccus pelagius NBRC 104925 Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Mobilicoccus Mobilicoccus pelagius 1089455 BAFE00000000.1 Bac0004715 Methanolobus tindarius DSM 2278 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus tindarius 1090322 AZAJ00000000.1 Bac0004716 Candidatus Burkholderia pumila str. UZHbot3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Candidatus Burkholderia pumila 1090375 LELG00000000.1 Bac0004717 Flavobacterium indicum GPTSA100-9 = DSM 17447 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium indicum aerobic 1094466 NC_017025.1 Bac0004718 Bartonella bovis 91-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella bovis 1094491 NZ_CM001844.1 Bac0004719 Bartonella bovis m02 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella bovis 1094492 AGWB00000000.1 Bac0004720 Bartonella alsatica IBS 382 "Bartonella alsatica IBS 382 is a Gram-negative, rod-shaped bacterium classified within the Bartonella genus. This microbe exhibits microaerophilic characteristics, indicating that it thrives in environments with reduced oxygen levels, which is typical for many members of the Bartonella genus. ↵↵Bartonella species are often associated with specific ecological niches, and the microaerophilic requirement of B. alsatica IBS 382 suggests a potential adaptation to environments where oxygen is limited, such as within host tissues or in certain ecological substrates. While the pathogenic potential and specific ecological roles of B. alsatica IBS 382 have not been detailed, related species are known to display a range of interactions with mammalian hosts, some of which can be pathogenic. ↵↵This bacterium's rod shape, in conjunction with its Gram-negative cell wall structure, may influence its interactions with host immune systems and its survival in various environments. Overall, the characteristics of Bartonella alsatica IBS 382 suggest a specialized adaptation to microaerophilic conditions, which may play a crucial role in its ecological interactions, potentially affecting its distribution and prevalence in specific habitats. Further research is warranted to elucidate the full biological and ecological implications of this microbe." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella alsatica Gram-negative rod microaerophile 1094551 AIME00000000.1 Bac0004721 Bartonella tamiae Th239 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Attibartonella Attibartonella tamiae 1094558 AIMB00000000.1 Bac0004722 Bartonella washoeensis 085-0475 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Candidatus Bartonella washoeensis 1094564 AILX00000000.1 Bac0004723 Bartonella sp. DB5-6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella sp. DB5-6 1094755 AILT00000000.1 Bac0004724 Marinobacter manganoxydans MnI7-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter manganoxydans 1094979 AGTR00000000.1 Bac0004725 Streptococcus intermedius SK54 = ATCC 27335 "Streptococcus intermedius SK54, also designated as ATCC 27335, is a Gram-positive, cocci-shaped bacterium, belonging to the genus Streptococcus. This microbe prefers mesophilic temperatures, thriving optimally at around 37°C, making it well-suited to the human body. Streptococcus intermedius SK54 is a chemoheterotroph, deriving its energy through the fermentation of organic compounds. It is primarily found in various body sites, including the oral cavity, gastrointestinal tract, and female genital tract, indicating its role as a common commensal organism. As a facultative anaerobe, S. intermedius can grow in both the presence and absence of oxygen, allowing it to adapt to different environments within the human host. This adaptability is crucial for its survival in diverse ecological niches, ranging from oxygen-rich areas to more anaerobic locales. The ability of S. intermedius to successfully colonize various body sites underscores its contribution to the microbiota, where it can play both beneficial and pathogenic roles. While it generally exists harmlessly as part of normal flora, this bacterium is also recognized for its potential to cause opportunistic infections. It has been implicated in conditions such as abscess formations and endocarditis, particularly in immunocompromised hosts. S. intermedius is of particular interest in the field of microbiology due to its involvement in polymicrobial infections. Its close association with other microorganisms highlights its role in the complex interactions within the human microbiome, influencing health and disease states. Additionally, S. intermedius has been studied for its enzyme production, notably proteases and amylases, which points to its potential applications in biotechnology and pharmaceuticals." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus intermedius Positive Cocci Facultative anaerobe 1095731 BASV00000000.1 Bac0004726 Streptococcus mitis SK616 "Streptococcus mitis SK616 is a Gram-positive coccus that typically arranges itself in chains and pairs, reflecting its characteristic morphology. As a nonsporulating organism, it relies on its host-associated habitat for survival and growth. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is particularly advantageous in the diverse microenvironments found within host organisms. ↵↵S. mitis is part of a broader group of viridans streptococci, which are commonly found in the human oral cavity and respiratory tract. Its ability to adapt to varying oxygen levels suggests a metabolic versatility that may facilitate its persistence in host-associated niches. Understanding the ecological role of S. mitis SK616 could provide insights into its contribution to the oral microbiome and its interactions with other microbial species. The ability of this microbe to exist in chains may also enhance its ability to form biofilms, potentially influencing microbial community dynamics in its natural habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1095735 AICR00000000.1 Bac0004727 Streptococcus mitis SK575 "Streptococcus mitis SK575 is a Gram-positive bacterium characterized by its cocci shape and the tendency to form chains and pairs. This nonsporulating organism is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Streptococcus mitis SK575 is primarily found in host-associated habitats, suggesting a close relationship with its host organisms.↵↵The adaptation to a facultative anaerobic lifestyle indicates that this microbe can efficiently utilize various metabolic pathways depending on the availability of oxygen, which may contribute to its survival in diverse environments within the host. Its presence in host-associated habitats highlights its potential role in the microbial communities that inhabit the oral cavity and other mucosal surfaces, where it may participate in complex interactions with other microorganisms and the host immune system.↵↵This bacterium's ability to form chains and pairs may enhance its resilience in fluctuating environments, allowing it to maintain a stable presence in the host. Understanding the ecological dynamics of Streptococcus mitis SK575 could provide insights into its contributions to the overall health of its host and its interactions within the microbiome, emphasizing the significance of this microbe in maintaining homeostasis in host-associated ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1095736 AICU00000000.1 Bac0004728 Streptococcus mitis SK579 "Streptococcus mitis SK579 is a Gram-positive, nonsporulating coccus that typically forms chains or pairs. As a facultative anaerobe, this microbe demonstrates versatile metabolic capabilities, allowing it to thrive in varying oxygen conditions. ↵↵Streptococcus mitis is part of the normal flora found in the human oral cavity and is associated with various host environments, suggesting its potential role in maintaining microbial homeostasis within these ecosystems. While the strain SK579 is not characterized by specific pathogenic traits, its presence in host-associated habitats indicates its possible involvement in commensal interactions, where it may contribute to oral health and microbial balance. ↵↵Additionally, the ability of Streptococcus mitis SK579 to grow in both aerobic and anaerobic conditions enhances its adaptability to fluctuating environmental conditions within the host. This trait may facilitate its survival during oral dysbiosis, which could occur due to dietary changes or antibiotic treatments. Thus, S. mitis SK579 exemplifies the complexity of microbial life within host-associated environments, highlighting the importance of such organisms in ecological and health-related contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1095737 AJJL00000000.1 Bac0004729 Streptococcus oralis SK1074 "Streptococcus oralis SK1074 is a Gram-positive coccus that typically exhibits a cellular arrangement in pairs or chains. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, adapting its metabolic processes accordingly. Streptococcus oralis SK1074 is primarily host-associated, indicating a likely presence in the oral cavity or other mucosal surfaces of its host.↵↵The ability of S. oralis SK1074 to form chains and pairs may be significant for its interactions within the host environment, potentially influencing its role in biofilm formation and community dynamics within the oral microbiome. The facultative anaerobic nature of this strain suggests a versatile metabolic capability, allowing it to survive and proliferate in fluctuating oxygen levels, which is common in host-associated habitats.↵↵Understanding the growth characteristics and habitat preferences of Streptococcus oralis SK1074 may provide insights into its ecological role within the oral microbiome, particularly in maintaining the balance of microbial communities. This balance is essential for oral health, as disturbances can lead to dysbiosis and associated health issues. Thus, the study of this strain may contribute to a broader understanding of microbial interactions in host-associated environments and their implications for host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1095738 AICT00000000.1 Bac0004730 Streptococcus oralis SK10 "Streptococcus oralis SK10 is a Gram-positive coccus that typically forms pairs and chains. This bacterium is a facultative anaerobe, allowing it to thrive in various oxygen levels, which is advantageous in its host-associated habitat. As a member of the Streptococcus genus, S. oralis SK10 is likely to be involved in diverse interactions within its host environment, potentially contributing to the microbial community dynamics.↵↵The ability of S. oralis SK10 to survive in both aerobic and anaerobic conditions may reflect its adaptability to different niches within the host, such as oral or gastrointestinal environments. This flexibility could facilitate its role in maintaining microbial homeostasis and influencing host health. The organism's association with hosts suggests potential involvement in symbiotic relationships, which may play a part in nutrient acquisition or modulation of the host immune response.↵↵Overall, the ecological significance of Streptococcus oralis SK10 could be further elucidated by studying its interactions within the microbial communities of specific hosts, particularly in understanding its role in oral health and the balance of commensal and pathogenic microorganisms." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1095739 AJKO00000000.1 Bac0004731 Streptococcus oralis SK610 "Streptococcus oralis SK610 is a Gram-positive coccus that typically forms pairs or chains and is classified as a facultative anaerobe. This microbe is primarily host-associated, indicating its natural habitat is within the human body, where it is commonly found in the oral cavity. ↵↵As a member of the Streptococcus genus, S. oralis SK610 is part of a complex microbial community and may play a role in oral health as well as in the dynamics of the oral microbiome. Its facultative anaerobic nature allows it to thrive in both aerobic and anaerobic environments, which is particularly advantageous in the diverse conditions of the oral environment where oxygen levels can fluctuate. ↵↵Understanding the characteristics of S. oralis SK610 contributes to a greater comprehension of the interactions within the oral microbiome and highlights the potential for this strain to participate in both beneficial and detrimental processes in relation to oral health. Future studies could explore its specific interactions with other microorganisms in the oral cavity, further elucidating its ecological role and potential impact on human health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1095741 AJKQ00000000.1 Bac0004732 Natronobacterium texcoconense Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobacterium Natronobacterium texcoconense 1095778 FNLC00000000.1 Bac0004733 Fonticella tunisiensis str. DSM 24455 "Fonticella tunisiensis str. DSM 24455 is a Gram-positive, rod-shaped bacterium that thrives under anaerobic conditions and exhibits optimal growth at a temperature of 45.0°C. This species is characterized by its non-spore-forming nature, which suggests a reliance on favorable environmental conditions for survival and growth, rather than adopting a dormant state to endure unfavorable conditions.↵↵The ability of F. tunisiensis to grow optimally at elevated temperatures indicates its potential adaptation to thermophilic environments, which may include geothermal features or hot springs. Its anaerobic requirement further emphasizes its ecological niche, possibly associating it with environments where oxygen is limited or absent, such as deep-sea sediments or organic-rich anaerobic environments. ↵↵Overall, Fonticella tunisiensis str. DSM 24455 may play a role in biogeochemical processes occurring in high-temperature, low-oxygen ecosystems, potentially contributing to nutrient cycling and organic matter decomposition in its natural habitat." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Fonticella Fonticella tunisiensis Gram-positive rod non-motile anaerobic 45 thermophilic non-spore-forming 1096341 SOAZ00000000.1 Bac0004734 Pseudonocardia sp. EC080619-01 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. EC080619-01 1096856 NZ_CP012185.1 Bac0004735 Devosia lucknowensis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia lucknowensis 1096929 FXWK00000000.1 Bac0004736 Pseudoalteromonas sp. BSi20429 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. BSi20429 1097676 BADV00000000.1 Bac0004737 Clavibacter nebraskensis NCPPB 2581 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter nebraskensis 1097677 NC_020891.1 Bac0004738 Limnohabitans sp. 2KL-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. 2KL-1 1100699 NESL00000000.1 Bac0004739 Limnohabitans sp. 15K Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. 15K 1100706 NESM00000000.1 Bac0004740 Limnohabitans sp. Rim8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. Rim8 1100718 NESO00000000.1 Bac0004741 Methylophilaceae bacterium 11 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylophilaceae bacterium 11 1101195 JCKJ00000000.1 Bac0004742 Xanthomonas axonopodis pv. commiphoreae str. LMG26789 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas axonopodis 1101443 NZ_CP031060.1 Bac0004743 Lactococcus cremoris subsp. cremoris A76 "Lactococcus cremoris subsp. cremoris A76 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, thriving optimally at a temperature of 40.0°C. This subspecies belongs to a genus known for its role in dairy fermentation, contributing to the production of various fermented dairy products. As a facultative anaerobe, L. cremoris A76 can adapt to both aerobic and anaerobic environments, allowing it to colonize diverse habitats where oxygen levels fluctuate.↵↵The coccoid morphology of L. cremoris A76 is characteristic of lactic acid bacteria, which are essential in food microbiology due to their ability to ferment lactose into lactic acid, thus lowering pH and enhancing food preservation. The ability to thrive at elevated temperatures suggests a potential for industrial applications in processes requiring fermentation at higher temperatures, which may improve efficiency and reduce the risk of contamination by other microorganisms.↵↵Furthermore, the broad habitat range of L. cremoris A76 indicates its versatility and resilience, traits that may facilitate its use in various biotechnological applications beyond traditional dairy fermentation. This adaptability could contribute to its potential role in the development of novel probiotic formulations or in biopreservation strategies, underlining the significance of L. cremoris A76 in both food technology and microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1104322 NC_017492.1 Bac0004744 Pyrobaculum ferrireducens str. 1860 Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum ferrireducens 1104324 NC_016645.1 Bac0004745 Borrelia turcica IST7 "Borrelia turcica IST7 is a rod-shaped bacterium classified as a microaerophile, indicating its requirement for low levels of oxygen for optimal growth. This characteristic suggests that B. turcica IST7 may inhabit environments where oxygen levels are limited, potentially influencing its ecological niches and interactions with other microbial communities. The rod shape of the organism may facilitate motility and colonization in specific habitats, although its precise ecological roles and interactions remain to be explored in detail. Understanding the environmental conditions that support the growth of B. turcica IST7 could provide insights into its potential applications in biotechnology or its role within microbial ecosystems. The microaerophilic nature of this bacterium underscores the importance of oxygen gradient environments, which may serve as crucial habitats for similar microorganisms." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia turcica rod microaerophile 1104446 NZ_CP028887.1 Bac0004746 Rickettsia slovaca str. D-CWPP Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia slovaca 1105109 NC_017065.1 Bac0004747 Rickettsia australis str. Cutlack Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia australis 1105110 NC_017058.1 Bac0004748 Rickettsia amblyommatis str. GAT-30V Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia amblyommatis 1105111 NC_017021.1 Bac0004749 Mesorhizobium alhagi CCNWXJ12-2 "Mesorhizobium alhagi CCNWXJ12-2 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is classified as non-spore-forming. This microbe is notable for its ability to engage in symbiotic relationships, particularly with leguminous plants, which may enhance nitrogen fixation in its native habitat. ↵↵The rod shape of M. alhagi CCNWXJ12-2 is characteristic of many members of the Rhizobiaceae family, which are known for their role in plant interactions. Being aerobic, this strain requires oxygen for its metabolic processes, a trait that influences its ecological niche and growth conditions. The absence of sporulation suggests that M. alhagi CCNWXJ12-2 relies on other survival strategies, potentially including the formation of biofilms or other protective structures under environmental stress.↵↵In terms of ecological impact, M. alhagi CCNWXJ12-2 may play a crucial role in soil health and fertility by promoting nitrogen availability through its symbiotic relationships. This interaction not only benefits the host plants by enhancing nutrient uptake but also contributes to the overall nitrogen cycle within terrestrial ecosystems. Further studies on this strain could provide deeper insights into its specific interactions with host plants and its potential applications in sustainable agriculture." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Allomesorhizobium Allomesorhizobium alhagi Gram-negative rod aerobic non-spore-forming 1107882 AHAM00000000.1 Bac0004750 Gordonia otitidis NBRC 100426 "Gordonia otitidis NBRC 100426 is a Gram-positive, spherical bacterium that exhibits aerobic to microaerophilic growth characteristics, thriving optimally at a temperature of 29.0°C. This microorganism belongs to the genus Gordonia, which is known for its ability to degrade a variety of complex organic compounds, particularly in environments rich in hydrocarbons. The Gram-positive nature of Gordonia otitidis suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environmental conditions.↵↵The optimal growth temperature of 29.0°C indicates that this bacterium is well-adapted to moderate temperature environments, potentially reflecting its ecological niche. As an aerobic organism, Gordonia otitidis likely plays a role in biogeochemical cycles, particularly in the degradation of organic matter in oxygen-rich habitats. Furthermore, its microaerophilic capabilities suggest that it may thrive in environments with fluctuating oxygen levels, allowing it to exploit specific ecological niches where competition for resources is less intense.↵↵Understanding the metabolic pathways and ecological roles of Gordonia otitidis can provide insights into its potential applications in bioremediation, particularly in the treatment of contaminated environments. Its unique adaptations underscore the diverse strategies that microorganisms employ to survive and flourish in varied ecological contexts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia otitidis Gram-positive sphere non-motile aerobic / microaerophile 29 mesophilic 1108044 BAFB00000000.1 Bac0004751 Gordonia rhizosphera NBRC 16068 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia rhizosphera 29 mesophilic 1108045 BAHC00000000.1 Bac0004752 Chromobacterium vaccinii str. XC0014 "Chromobacterium vaccinii strain XC0014 is a Gram-negative cocci bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is optimally cultured at a temperature of 25.0°C, indicating a preference for moderate conditions that may be typical of its natural habitats. While the specific ecological niches of C. vaccinii XC0014 are not detailed, the indication of a habitat that spans multiple environments suggests adaptability and potential roles in various microbial communities. ↵↵The coccal shape of this bacterium may influence its interactions with other microorganisms as well as its ability to form biofilms or aggregate in clusters, which can be significant in nutrient acquisition and competition. The facultative anaerobic nature of C. vaccinii XC0014 also implies that it can switch between utilizing oxygen and fermentative pathways depending on the availability of oxygen, enhancing its survival in fluctuating environmental conditions. ↵↵In summary, the ability of Chromobacterium vaccinii strain XC0014 to thrive in diverse habitats and utilize both aerobic and anaerobic metabolic pathways underscores its potential ecological versatility, which could play a role in nutrient cycling within its environments." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium vaccinii Negative Cocci Yes 1 2 Facultatively anaerobe 25 Mesophilic Multiple 1108595 NZ_CP022344.1 Bac0004753 Mycolicibacter longobardus Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter longobardus 1108812 LQPG00000000.1 Bac0004754 Ligilactobacillus salivarius SMXD51 "Ligilactobacillus salivarius SMXD51 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism. This microbe is primarily associated with host environments, suggesting a close symbiotic relationship with its host organism. Ligilactobacillus salivarius species are typically found in the gastrointestinal tracts of various animals, where they may play a role in the fermentation of carbohydrates and the production of lactic acid.↵↵The facultative anaerobic nature of L. salivarius SMXD51 indicates its ability to thrive in both oxygen-rich and oxygen-poor environments, which is advantageous for colonization and survival within diverse host habitats. This adaptability could allow it to influence the gut microbiome composition and contribute to metabolic processes that benefit the host, such as digestion and immune modulation.↵↵In addition, the presence of this microbe in the host-associated habitat underscores its potential importance in maintaining gut health and stability. The interactions between Ligilactobacillus salivarius SMXD51 and the host may provide insights into the mechanisms of microbial symbiosis and the evolutionary advantages conferred by such relationships in the microbiome." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1108963 AICL00000000.1 Bac0004755 Mycoplasmopsis agalactiae 14628 "Mycoplasmopsis agalactiae 14628 is a Gram-negative, coccoid bacterium that typically exists as single cells and is classified as facultatively anaerobic. This microbe is host-associated, indicating a close relationship with its host organisms, which may influence its metabolic and ecological roles. ↵↵As a member of the Mycoplasmataceae family, M. agalactiae demonstrates unique morphological and physiological characteristics that distinguish it from other bacterial types, particularly its lack of a traditional cell wall, a trait common among mycoplasmas. The facultative anaerobic nature of this organism implies that it can adapt its metabolic processes in response to varying oxygen levels, allowing it to thrive in diverse microenvironments within its host.↵↵The host-associated habitat suggests potential interactions with the host's immune system, metabolism, and microbiota, which may play a significant role in its survival and proliferation. This adaptability and association highlight its potential importance in the broader context of host-microbe interactions, warranting further investigation into its ecological roles and impacts on host health. Understanding M. agalactiae's behavior and interactions within its environment could provide insights into the dynamics of microbial communities and their influences on host organisms." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis agalactiae Negative Cocci No 1 1 Facultative Psychrophilic HostAssociated Free living Singles 1110504 AJPR00000000.1 Bac0004756 Veillonella tobetsuensis Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella tobetsuensis 1110546 PPDF00000000.1 Bac0004757 Nocardia asteroides NBRC 15531 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia asteroides microaerophile 1110697 BAFO00000000.2 Bac0004758 Thermus sp. CCB_US3_UF1 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. CCB_US3_UF1 1111069 NC_016634.1 Bac0004759 Rhodoferax antarcticus ANT.BR Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax antarcticus anaerobic 1111071 MSYM00000000.1 Bac0004760 Prevotella sp. BV3P1 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. BV3P1 1111130 AWXC00000000.1 Bac0004761 Peptoniphilus sp. BV3AC2 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus sp. BV3AC2 1111133 AWXD00000000.1 Bac0004762 Peptoniphilus sp. BV3C26 "Peptoniphilus sp. BV3C26 is a chemoheterotrophic bacterium primarily found in the gut of mammalian hosts, contributing to the complex microbial ecosystem essential for digestion and nutrient absorption. This microbe engages in the breakdown of organic compounds derived from the host's diet, utilizing these substrates for energy and growth. Its presence in the gastrointestinal tract highlights its role in maintaining gut health and supporting symbiotic relationships within the microbial community. Although specific details regarding the gram stain, shape, and other morphological characteristics of Peptoniphilus sp. BV3C26 remain unidentified, its classification within the genus Peptoniphilus suggests it might share traits common to related species, including potential anaerobic metabolism. Research on Peptoniphilus sp. BV3C26 indicates that it could contribute to organic matter decomposition, influencing the overall microbial diversity and stability in its habitat. An interesting ecological insight regarding Peptoniphilus sp. BV3C26 is its role in the gut microbiome. By digesting complex carbohydrates and proteins, it aids in the fermentation process, producing short-chain fatty acids that serve as a vital energy source for both the host and the microbial community. This mutualistic relationship exemplifies the intricate interdependencies within gut microbiota, where microbial metabolism not only influences host health but also the overall ecological balance by recycling nutrients within the digestive system." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus sp. BV3C26 Positive No 1 Chemoheterotroph Host Gut 1111134 AWXB00000000.1 Bac0004763 Streptococcus troglodytae str. TKU 31 "Streptococcus troglodytae strain TKU 31 is a Gram-positive, spherical bacterium characterized by its non-spore-forming nature. This microbe belongs to the genus Streptococcus, which is known for its diverse group of species that inhabit various ecological niches. The spherical morphology of S. troglodytae str. TKU 31 suggests it may exhibit typical streptococcal arrangements, potentially influencing its interactions within its environment and with other microorganisms.↵↵As a non-spore-forming organism, S. troglodytae str. TKU 31 may rely on its vegetative state for survival in its ecological niche. This trait may confer particular advantages in stable environments where sporulation is not necessary for survival. It is important to note that the lack of sporulation could limit its ability to endure extreme conditions compared to spore-forming bacteria, which can enter a dormant state.↵↵While specific ecological or pathogenic roles of S. troglodytae str. TKU 31 have not been detailed, its Gram-positive nature may suggest the presence of a thick peptidoglycan layer in its cell wall, which is a characteristic feature of this group. Such structural attributes might play a role in its interactions with other microbial communities and its resilience in various habitats. Thus, understanding the traits of S. troglodytae str. TKU 31 could provide insights into its potential ecological relationships, particularly in environments conducive to Gram-positive bacteria." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus troglodytae Gram-positive sphere non-spore-forming 1111760 NZ_AP014612.1 Bac0004764 Gordonia polyisoprenivorans VH2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia polyisoprenivorans 1112204 NC_016907.1 Bac0004765 Chlamydia psittaci 01DC11 Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci 1112252 ATKP00000000.1 Bac0004766 Natronorubrum tibetense GA33 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum tibetense 1114856 AOHW00000000.1 Bac0004767 Flavobacterium tructae str. MSU Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium tructae aerobic 1114873 MIKE00000000.1 Bac0004768 Citrobacter werkmanii NBRC 105721 "Citrobacter werkmanii NBRC 105721 is a Gram-negative, non-sporulating bacillus belonging to the Enterobacteriaceae family. This microbe is characterized by its rod-shaped morphology, common among many Enterobacteriaceae members. It is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, which it metabolizes for growth and reproduction.C. werkmanii is mesophilic, thriving in moderate temperature ranges typically found in natural and engineered environments. While specific optimal temperature data for this strain is not detailed, mesophilic bacteria generally prefer temperatures between 20 to 45 °C, making them prevalent in habitats such as soil, water, and the gastrointestinal tracts of animals. The ecological significance of Citrobacter species, including C. werkmanii, primarily lies in their role in nutrient cycling and their potential impact on human health. They can be part of the normal gut flora but have also been implicated in opportunistic infections, especially in immunocompromised individuals. Furthermore, C. werkmanii's ability to metabolize various organic compounds makes it of interest in bioremediation processes, where microbes are utilized to degrade environmental pollutants. This adaptability highlights the importance of understanding such microbes, as they may play crucial roles in both ecosystem health and public health contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter werkmanii Negative Rod Yes 1 Chemoheterotroph Mesophilic Nonsporulating 1114921 BBMW00000000.1 Bac0004769 Novosphingobium barchaimii LL02 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium barchaimii 1114963 JACU00000000.1 Bac0004770 Pseudomonas ogarae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas ogarae 1114970 MWTP00000000.1 Bac0004771 Furfurilactobacillus rossiae DSM 15814 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Furfurilactobacillus Furfurilactobacillus rossiae 1114972 AZFF00000000.1 Bac0004772 Atlantibacter hermannii NBRC 105704 "Atlantibacter hermannii NBRC 105704 is a Gram-negative bacterium characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The Gram-negative classification suggests that A. hermannii possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its environmental adaptability and survival strategies.↵↵As a facultative anaerobe, A. hermannii has the metabolic flexibility to utilize oxygen when available, while also being capable of fermentative metabolism in its absence. This trait is particularly advantageous in fluctuating environmental conditions where oxygen levels may vary, allowing the microbe to occupy diverse ecological niches. ↵↵The physiological and structural characteristics of A. hermannii, including its Gram-negative nature and facultative anaerobic metabolism, suggest potential roles in various microbial communities, particularly in environments where organic matter is present and oxygen can be limited. Such traits may indicate its involvement in nutrient cycling or organic decomposition processes, although specific ecological interactions remain to be elucidated. Further investigations into the ecological roles of A. hermannii could provide insight into its contributions to microbial diversity and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Atlantibacter Atlantibacter hermannii Negative Facultative anaerobe 1115512 BAFF00000000.1 Bac0004773 Romboutsia ilealis Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Romboutsia ilealis anaerobic 1115758 NZ_LN555523.1 Bac0004774 Actinomyces naeslundii str. Howell 279 "Actinomyces naeslundii str. Howell 279 is a gram-positive, rod-shaped bacterium that thrives in a mesophilic temperature range, classified as a chemoheterotroph. This microbe primarily inhabits the human oral cavity, yet has been isolated from other body sites such as the gastrointestinal tract and respiratory tract. A. naeslundii is considered an obligate anaerobe, meaning it requires an oxygen-free environment for optimal growth, and it is commonly found in biofilms associated with dental plaque. As a gram-positive organism, A. naeslundii retains the crystal violet stain used in the Gram staining procedure, resulting in a deep purple appearance under a microscope. This characteristic is indicative of a thick peptidoglycan layer in its cell wall, which provides structural strength and plays a role in its pathogenic potential. The rod-shaped morphology is typical for many species within the Actinomyces genus, allowing for efficient colonization and interaction with other microbes. Being a chemoheterotroph, A. naeslundii derives its energy and carbon from organic compounds, which it accesses in the nutrient-rich environments of the human body. Its anaerobic nature facilitates its survival in low-oxygen niches, allowing it to coexist with other microorganisms in the complex and dynamic oral microbiome. This microbe plays a crucial role in dental health, as it contributes to the formation of dental plaque, a precursor to caries and periodontal diseases. Moreover, A. naeslundii has been studied for its potential applications in biotechnology and medicine, given its enzymatic capabilities and interactions with other microbial species in the human microbiome. Its unique properties make it a subject of interest in research related to oral health and microbial ecology." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces naeslundii Positive Facultative anaerobe 1115803 ALJK00000000.1 Bac0004775 Streptococcus pyogenes GA06023 "Streptococcus pyogenes GA06023 is a Gram-positive cocci bacterium that typically forms chains or pairs and is categorized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This strain exhibits an optimal growth temperature of 30.0°C, indicating its preference for mesophilic conditions, which are commonly found in host-associated habitats. ↵↵S. pyogenes, as a member of the Streptococcus genus, is often associated with various human hosts, where it can inhabit mucosal surfaces. Its facultative anaerobic capability suggests it can adapt to different oxygen levels in the host environment, potentially allowing it to exploit various niches within host tissues.↵↵The ecological role of S. pyogenes GA06023 may involve interactions with the host's immune system, where its ability to form chains could influence its colonization and persistence in host tissues. Further research into this strain could provide insights into the dynamics of host-microbe interactions, particularly how its growth characteristics might affect its ecological niche within the human microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1115816 AWPJ00000000.1 Bac0004776 Streptococcus macedonicus ACA-DC 198 "Streptococcus macedonicus ACA-DC 198 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolic capabilities. This bacterium thrives optimally at a temperature of 30.0°C and has been isolated from dairy environments, indicating its association with fermented dairy products. The coccal shape of S. macedonicus suggests a potential role in the fermentation processes typical of dairy microbiota, which can influence flavor and texture development in various dairy products. ↵↵The chemoheterotrophic nature of this microbe allows it to utilize organic compounds as both carbon and energy sources, suggesting that it may play a role in the breakdown of lactose and other carbohydrates present in milk. This trait could be particularly advantageous in dairy fermentation, where the ability to metabolize diverse substrates is essential for the production of lactic acid and other metabolites that contribute to the preservation and sensory attributes of dairy products.↵↵Overall, the characteristics of S. macedonicus ACA-DC 198 underscore its potential significance in dairy ecosystems, possibly contributing to the diversity and functionality of microbial communities involved in dairy fermentation processes. Its specific adaptation to dairy habitats positions it as a relevant organism for further studies on microbial interactions in fermented foods." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus macedonicus Positive Cocci No 1 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1116231 NC_016749.1 Bac0004777 Paenibacillus alvei TS-15 "Paenibacillus alvei TS-15 is a Gram-variable, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This means that it can thrive in both aerobic and anaerobic environments, allowing it to adapt to various ecological niches. The variable Gram staining characteristic suggests that the cell wall structure may differ among individual cells or growth conditions, which can be indicative of the organism's adaptability to different environments.↵↵As a member of the genus Paenibacillus, which is known for its diverse metabolic capabilities, P. alvei TS-15 may play significant roles in nutrient cycling and organic matter decomposition in its native habitat. Its facultative anaerobic nature could enable it to contribute to soil health and fertility, particularly in fluctuating oxygen conditions often found in rhizospheres or decaying organic matter. ↵↵Furthermore, the capacity to grow in varied oxygen levels may facilitate interactions with other microbial communities, enhancing its ecological competitiveness. Understanding the physiological traits of Paenibacillus alvei TS-15 could provide insights into its potential applications in biotechnology, particularly in bioremediation or agriculture, where microbial versatility is essential for effective ecosystem management." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus alvei Variable Rod Facultative anaerobe 1117108 ATMT00000000.1 Bac0004778 Pseudoalteromonas arctica A 37-1-2 "Pseudoalteromonas arctica A 37-1-2 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and is non-spore-forming. This microbe has an optimal growth temperature of 16.0 °C, suggesting a preference for cooler environments typical of polar or temperate marine habitats. ↵↵The Gram-negative nature of P. arctica A 37-1-2 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its ability to thrive in nutrient-rich aquatic environments. As an aerobic organism, it relies on oxygen for its metabolic processes, positioning it within ecosystems where oxygen levels are adequate, such as well-oxygenated waters.↵↵The non-spore-forming characteristic suggests that P. arctica A 37-1-2 may not possess the same resilience to extreme environmental stresses as some spore-forming bacteria, which typically enter a dormant state to survive unfavorable conditions. Instead, this strain likely maintains a more active lifestyle, contributing to its ecological role in nutrient cycling within its native habitat.↵↵Given its optimal growth temperature and aerobic nature, Pseudoalteromonas arctica A 37-1-2 may play a significant role in the microbial communities of cold marine environments, potentially influencing organic matter degradation and nutrient availability in these ecosystems. Understanding its physiological traits may provide insights into the adaptations of marine bacteria in response to climate variations and their roles in biogeochemical cycles." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas arctica Gram-negative rod aerobic 16 psychrotolerant non-spore-forming 1117313 NZ_CP011025.1 Bac0004779 Pseudoalteromonas citrea DSM 8771 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas citrea 1117314 AHBZ00000000.3 Bac0004780 Pseudoalteromonas rubra DSM 6842 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas rubra 1117318 AHCD00000000.3 Bac0004781 Pseudoalteromonas spongiae UST010723-006 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas spongiae 1117319 NZ_CP011040.1 Bac0004782 Elizabethkingia anophelis str. V0378064 "Elizabethkingia anophelis str. V0378064 is a Gram-negative, nonsporulating rod-shaped bacterium characterized as a chemoheterotroph and requiring aerobic conditions for growth. This strain exemplifies the diverse metabolic capabilities found within the genus Elizabethkingia, which is noted for its adaptability to various habitats. The ability of E. anophelis to thrive in multiple environments underscores its ecological versatility, potentially allowing it to occupy niches that other bacteria may not exploit as efficiently.↵↵As an aerobic organism, E. anophelis str. V0378064 utilizes organic compounds as its primary energy source, underscoring its role in nutrient cycling in its specific ecosystems. Its nonsporulating nature suggests that it may rely on other survival strategies to withstand environmental stresses, which could include forming biofilms or engaging in competitive interactions with other microbial communities.↵↵The presence of E. anophelis str. V0378064 in diverse habitats may offer insights into its evolutionary adaptability and ecological roles, particularly in environments where oxygen is readily available. Ongoing research into this strain could illuminate its interactions within microbial communities and its potential contributions to biogeochemical processes. Understanding the ecological dynamics of E. anophelis could enhance our comprehension of microbial diversity and function in various ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia anophelis Negative Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1117645 CCAB000000000.1 Bac0004783 Simiduia agarivorans SA1 = DSM 21679 "Simiduia agarivorans SA1, also known as DSM 21679, is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and utilizes an organotrophic lifestyle, deriving energy from organic compounds. This microbe thrives optimally at a temperature of 32.0°C, indicating a preference for moderately warm environments. As an aerobic organism, S. agarivorans requires oxygen for its metabolic processes, which aligns with its classification as a chemotroph that relies on chemical sources of energy rather than photosynthesis.↵↵The specific ecological niche of Simiduia agarivorans has not been detailed in the provided traits; however, its characteristics suggest a potential role in the degradation of organic materials in oxygen-rich environments. The capacity to utilize organic substrates may facilitate nutrient cycling in its habitat, possibly contributing to the breakdown of complex organic molecules. This functional role could be particularly significant in marine ecosystems, where organic matter is abundant, and microbial decomposition is essential for maintaining ecological balance. Further exploration of its metabolic pathways and interactions within its environment could provide deeper insights into its ecological contributions and potential applications in bioremediation or organic waste management." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Simiduia Simiduia agarivorans Gram-negative rod aerobic 32 organotroph; chemotroph mesophilic 1117647 NC_018868.3 Bac0004784 Vibrio quintilis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio quintilis 1117707 FRFG00000000.1 Bac0004785 Marinifilum flexuosum str. DSM 21950 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Marinifilum Marinifilum flexuosum 1117708 RAPQ00000000.1 Bac0004786 Pseudomonas extremaustralis 14-3 substr. 14-3b Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas extremaustralis 1117958 AHIP00000000.1 Bac0004787 Halomonas sp. GFAJ-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. GFAJ-1 1118153 AHBC00000000.1 Bac0004788 Brevibacillus laterosporus GI-9 "Brevibacillus laterosporus GI-9 is a rod-shaped bacterium characterized by its unique spore-forming capabilities. This species belongs to the genus Brevibacillus, which is known for its ability to thrive in various environments, including soil and aquatic habitats. The rod shape of B. laterosporus GI-9 is indicative of its cellular structure, which is typical for many bacteria within the Bacillaceae family.↵↵As a member of the Brevibacillus genus, B. laterosporus GI-9 is likely to exhibit resilience under diverse environmental conditions, particularly due to its spore formation, which allows it to endure extreme stressors such as heat and desiccation. This trait not only enhances its survival but may also play a role in its ecological interactions, including nutrient cycling and the potential for bioremediation applications.↵↵The distinct rod shape may also influence the bacterium's motility and colonization strategies, contributing to its ecological versatility. Given the adaptability of Brevibacillus species, further research into B. laterosporus GI-9 could reveal insights into its potential applications in biotechnology, particularly in the fields of agriculture and environmental science. Understanding its ecological role may provide valuable information on how it interacts with other microorganisms and its contributions to soil health and fertility." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus laterosporus Rod 1118154 CAGD00000000.1 Bac0004789 Cruoricaptor ignavus Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cruoricaptor Cruoricaptor ignavus microaerophile 1118202 FQYI00000000.1 Bac0004790 Mycolicibacter minnesotensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter minnesotensis 1118379 MVHZ00000000.1 Bac0004791 Ciceribacter sp. T2.26MG-112.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ciceribacter Ciceribacter sp. T2.26MG-112.2 1118451 UEYQ00000000.1 Bac0004792 Arthrobacter sp. Rue61a Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Rue61a 1118963 NC_018532.1 Bac0004793 Mesomycoplasma hyorhinis SK76 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis 1118964 NC_019552.1 Bac0004794 Marinobacter sp. P4B1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. P4B1 1119533 LLXM00000000.1 Bac0004795 Sphingopyxis sp. LC363 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. LC363 1120705 JNFC00000000.1 Bac0004796 Acetitomaculum ruminis DSM 5522 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Acetitomaculum Acetitomaculum ruminis anaerobic 1120918 FOJY00000000.1 Bac0004797 Actinomadura pelletieri DSM 43383 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura pelletieri 29 mesophilic 1120940 RBWU00000000.1 Bac0004798 Anaerobranca californiensis DSM 14826 "Anaerobranca californiensis DSM 14826 is a Gram-negative, rod-shaped bacterium that thrives under strict anaerobic conditions, with an optimal growth temperature of 45.0°C. This organism is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and proliferation. ↵↵As a member of the microbial community, A. californiensis may play a significant role in anaerobic processes, particularly in environments where organic matter decomposition occurs at elevated temperatures. The ability to grow optimally at 45.0°C indicates that this bacterium could be involved in thermophilic biological processes, potentially contributing to the cycling of nutrients in geothermal ecosystems or other heated anaerobic habitats.↵↵Understanding the traits of Anaerobranca californiensis provides insights into its potential applications in biotechnology, particularly in processes such as biogas production, where anaerobic microbes are essential for the breakdown of organic materials. The specific growth characteristics of this bacterium may also offer opportunities for exploring its metabolic pathways and interactions within microbial consortia in extreme environments." Bacillati Bacillota Clostridia Eubacteriales Proteinivoracaceae Anaerobranca Anaerobranca californiensis Gram-negative rod anaerobic 45 thermophilic non-spore-forming 1120989 FRAI00000000.1 Bac0004799 Arenimonas composti TR7-09 = DSM 18010 "Arenimonas composti TR7-09, also designated as DSM 18010, is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0°C. This species is characterized by its rod-like morphology, which is typical of many members within its genus. The Gram-negative nature of A. composti TR7-09 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that may contribute to its environmental adaptability and resistance to certain antibiotics.↵↵As a non-spore-forming organism, A. composti TR7-09 relies on other survival strategies in its environment, which may include metabolic versatility to utilize various substrates for energy and growth. While there is limited information on its ecological role, the ability of A. composti TR7-09 to thrive at 29.0°C indicates its potential relevance in moderately warm habitats, possibly contributing to nutrient cycling in compost or similar environments.↵↵The study of A. composti TR7-09 may provide insights into the microbial dynamics of composting processes, where it could play a role in the decomposition of organic matter, thus highlighting the importance of such microorganisms in waste management and soil health. Further research could elucidate its specific metabolic pathways and interactions within microbial communities in compost ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Arenimonas Arenimonas composti Gram-negative rod 29 mesophilic non-spore-forming 1121013 AWXU00000000.1 Bac0004800 Arenimonas oryziterrae DSM 21050 = YC6267 "Arenimonas oryziterrae DSM 21050, also known as YC6267, is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic processes and does not form spores. This microorganism thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic conditions. ↵↵As a member of the Arenimonas genus, A. oryziterrae contributes to the diverse microbial communities found in various environments, although specific ecological niches have not been detailed in the available data. The organism's aerobic nature suggests that it may play a role in the degradation of organic matter in oxygen-rich habitats, potentially impacting nutrient cycling and soil health. ↵↵Given its non-spore-forming characteristic, A. oryziterrae may be particularly sensitive to environmental stresses that would otherwise trigger sporulation in other bacterial species. This trait may influence its survival strategies and interactions within its ecological framework, positioning it as a significant player in ecosystems where aerobic conditions prevail. Further exploration of its metabolic capabilities and ecological interactions could enhance our understanding of its role in microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Arenimonas Arenimonas oryziterrae Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1121015 AVCI00000000.1 Bac0004801 Atopostipes suicloacalis DSM 15692 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Atopostipes Atopostipes suicloacalis anaerobic 1121025 FQUF00000000.1 Bac0004802 Brenneria nigrifluens DSM 30175 = ATCC 13028 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria nigrifluens aerobic 1121120 QDKK00000000.1 Bac0004803 Butyrivibrio fibrisolvens DSM 3071 "Butyrivibrio fibrisolvens DSM 3071 is a Gram-positive, anaerobic bacterium notable for its role in the degradation of complex carbohydrates within the gastrointestinal tracts of ruminants. Although structurally classified as Gram-positive, this microbe exhibits a Gram-negative staining response, which may reflect its unique cell wall composition or structural characteristics. ↵↵As an anaerobe, B. fibrisolvens thrives in oxygen-depleted environments, where it contributes to the fermentation processes that are essential for the digestion of fibrous plant materials. This fermentation activity not only aids in nutrient absorption for the host but also influences the overall microbial community structure within the gut. ↵↵The metabolic pathways employed by B. fibrisolvens are integral to the production of short-chain fatty acids, particularly butyrate, which serves as an important energy source for colonocytes and has various beneficial effects on gut health. The presence of this bacterium in the digestive system underscores the complex interdependencies among microorganisms in the gut microbiome and their collective impact on host metabolism.↵↵Overall, the anaerobic lifestyle and unique staining characteristics of Butyrivibrio fibrisolvens DSM 3071 exemplify the adaptive strategies of gut microbes in managing their ecological niches, contributing to the intricate symbiotic relationships that underpin ruminant digestion and health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio fibrisolvens Structurally positive but stains negative Anaerobe 1121131 FQXK00000000.1 Bac0004804 Caloranaerobacter azorensis DSM 13643 Bacillati Bacillota Tissierellia Tissierellales Thermohalobacteraceae Caloranaerobacter Caloranaerobacter azorensis 1121264 FQXO00000000.1 Bac0004805 Carboxydocella sporoproducens DSM 16521 "Carboxydocella sporoproducens DSM 16521 is a Gram-positive, rod-shaped bacterium known for its ability to form spores and thrive under anaerobic conditions, with an optimal growth temperature of 45.0 °C. This thermophilic microorganism is capable of utilizing carbon monoxide as a carbon source, which suggests a specialized metabolic pathway that may play a role in biogeochemical cycles involving carbon. ↵↵As a spore-forming organism, C. sporoproducens can withstand harsh environmental conditions, enabling it to survive in anoxic environments where carbon monoxide is present. Its adaptation to elevated temperatures and anaerobic conditions indicates a potential niche in high-temperature habitats, such as those found in geothermal areas or certain industrial processes. ↵↵The unique metabolic capabilities of C. sporoproducens highlight its potential utility in biotechnological applications, particularly in bioremediation or bioenergy production, by converting harmful carbon monoxide into less toxic compounds. Understanding the physiology and metabolic pathways of this organism may provide insights into the role of anaerobic bacteria in carbon cycling and their potential applications in sustainable environmental management." Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVI. Incertae Sedis Carboxydocella Carboxydocella thermautotrophica Gram-positive rod anaerobic 45 thermophilic spore-forming 1121270 FUXM00000000.1 Bac0004806 Chitinimonas taiwanensis DSM 18899 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Chitinimonas Chitinimonas taiwanensis 1121279 FPKR00000000.1 Bac0004807 Paramaledivibacter caminithermalis DSM 15212 "Paramaledivibacter caminithermalis DSM 15212 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments. This microbe has been characterized by its ability to survive and grow in conditions devoid of oxygen, which positions it as a potential candidate for further studies related to fermentation processes or bioremediation in oxygen-limited habitats. ↵↵As a member of the microbial community, P. caminithermalis could play a significant role in the degradation of organic matter, contributing to nutrient cycling in its ecosystem. The rod shape may facilitate its motility and colonization in these anaerobic niches. This organism's adaptation to low-oxygen environments suggests it may possess unique metabolic pathways that allow it to utilize alternative electron acceptors for energy production. ↵↵Understanding the specific metabolic capabilities of P. caminithermalis may provide insights into its ecological role and potential applications in biotechnology, particularly in anaerobic digestion or the treatment of wastewater. Its presence in environments where oxygen is absent underscores the diversity of microbial life and the specialized adaptations that enable survival in a range of ecological niches." Bacillati Bacillota Clostridia Peptostreptococcales Caminicellaceae Paramaledivibacter Paramaledivibacter caminithermalis Gram-positive rod anaerobic 1121301 FRAG00000000.1 Bac0004808 Clostridium colicanis DSM 13634 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium thermopalmarium anaerobic 1121305 LTBB00000000.1 Bac0004809 Clostridium cylindrosporum DSM 605 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium cylindrosporum anaerobic 1121307 LFVU00000000.1 Bac0004810 Clostridium felsineum DSM 794 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium felsineum 1121310 NZ_CP096981.1 Bac0004811 Anaerocolumna jejuensis DSM 15929 "Anaerocolumna jejuensis DSM 15929 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under anaerobic conditions. This species has an optimal growth temperature of 29.0 °C, indicating a preference for moderately warm environments. The ability to form spores is a significant trait, allowing the organism to withstand unfavorable conditions and survive in various habitats.↵↵As a strictly anaerobic microbe, Anaerocolumna jejuensis requires the absence of oxygen for growth, which suggests its potential role in anaerobic ecosystems, such as those found in deep-sea sediments or the gastrointestinal tracts of certain animals. This habitat preference may influence the organism's metabolic pathways, promoting the fermentation of organic compounds in the absence of oxygen.↵↵The unique combination of traits exhibited by Anaerocolumna jejuensis, particularly its Gram-positive nature, rod shape, and anaerobic lifestyle, positions it as a potentially important player in biogeochemical cycles, particularly in the degradation of organic matter in anoxic environments. Its sporulation ability further enhances its ecological resilience, suggesting that it could contribute to microbial community dynamics in environments subject to fluctuating conditions." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Anaerocolumna jejuensis Gram-positive rod anaerobic 29 mesophilic spore-forming 1121322 FRAC00000000.1 Bac0004812 Peptoclostridium litorale DSM 5388 Bacillati Bacillota Clostridia Peptostreptococcales Peptoclostridiaceae Peptoclostridium Peptoclostridium litorale 1121324 JJMM00000000.1 Bac0004813 Clostridium magnum DSM 2767 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium magnum anaerobic 1121326 LWAE00000000.1 Bac0004814 Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Thermoclostridium Thermoclostridium stercorarium 1121336 NZ_CP014672.1 Bac0004815 Ruminiclostridium sufflavum DSM 19573 "Ruminiclostridium sufflavum DSM 19573 is a Gram-negative, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under anaerobic conditions. The optimal growth temperature for this microbe is approximately 32.0°C, indicating its preference for mesophilic environments. ↵↵As a member of the Clostridia class, R. sufflavum is likely involved in the fermentation processes that occur in the gastrointestinal tracts of herbivores, contributing to the breakdown of complex carbohydrates. The spore-forming nature of this bacterium allows it to survive in fluctuating environmental conditions, which may aid its persistence in the gut ecosystem. ↵↵Additionally, the anaerobic requirement of R. sufflavum suggests a specialized niche where it can outcompete other microorganisms, particularly in environments where oxygen levels are low. This may play a crucial role in maintaining the balance of the microbial community within its habitat. Understanding the characteristics and behavior of Ruminiclostridium sufflavum may provide insights into its potential applications in biotechnology, particularly in processes related to fermentation and digestion in ruminant animals." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminiclostridium Ruminiclostridium sufflavum Gram-negative rod anaerobic 32 mesophilic spore-forming 1121337 QKMR00000000.1 Bac0004816 Clostridium tepidiprofundi DSM 19306 "Clostridium tepidiprofundi DSM 19306 is a rod-shaped, spore-forming bacterium that thrives in anaerobic environments, with an optimal growth temperature of 45.0 °C. This thermophilic microorganism has adapted to life in high-temperature niches, which may include geothermal habitats or deep-sea environments where oxygen levels are minimal. ↵↵As an anaerobe, C. tepidiprofundi relies on fermentation processes to generate energy, utilizing organic substrates present in its environment. The ability to form spores enables this microbe to withstand extreme conditions, including nutrient scarcity and temperature fluctuations, thus enhancing its survival and persistence in challenging habitats.↵↵The traits of C. tepidiprofundi suggest that it plays a significant role in the biodegradation of complex organic matter in thermophilic ecosystems. Its metabolic capabilities may contribute to the cycling of carbon and nutrients within these environments, potentially impacting the overall microbial community structure and function. Further study of this organism could reveal insights into its ecological role and applications in biotechnology, particularly in processes that exploit thermophilic fermentation." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tepidiprofundi rod anaerobic 45 thermophilic spore-forming 1121338 LTBA00000000.1 Bac0004817 Clostridium thermobutyricum DSM 4928 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium thermobutyricum 1121339 LTAY00000000.1 Bac0004818 Anaerocolumna xylanovorans DSM 12503 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Anaerocolumna xylanovorans anaerobic 1121345 FRFD00000000.1 Bac0004819 Corynebacterium callunae DSM 20147 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium callunae 29 mesophilic 1121353 NC_020523.1 Bac0004820 Corynebacterium halotolerans YIM 70093 = DSM 44683 str. YIM 70093 (T) "Corynebacterium halotolerans YIM 70093 = DSM 44683 str. YIM 70093 (T) is a Gram-positive, rod-shaped bacterium that exhibits strict aerobic metabolism and does not form spores. This microorganism thrives optimally at a temperature of 29.0 °C, suggesting a preference for mesophilic conditions. Its Gram-positive nature is indicative of a thick peptidoglycan layer in its cell wall, which is characteristic of the Corynebacterium genus.↵↵As a non-spore-forming organism, C. halotolerans may rely on vegetative propagation for reproduction and survival in its environment. The aerobic requirement points to its dependence on oxygen for energy production, which aligns with its classification within the Corynebacteriaceae family, known for its diverse metabolic capabilities.↵↵The specific ecological niche of C. halotolerans has not been detailed in the provided traits; however, its halotolerance may suggest an adaptation to environments with elevated salt concentrations. This trait could reflect a potential role in biogeochemical cycles in saline habitats or its utility in biotechnological applications where salt tolerance is advantageous. Further studies are warranted to explore its ecological interactions and possible applications in microbial biotechnology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium halotolerans Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1121362 NC_020303.1 Bac0004821 Desulfacinum infernum DSM 9756 Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfacinum Desulfacinum infernum anaerobic 1121391 FQVB00000000.1 Bac0004822 Desulfocicer vacuolatum DSM 3385 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfocicer Desulfocicer vacuolatum 1121400 FWXY00000000.1 Bac0004823 Desulfofustis glycolicus DSM 9705 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfofustis Desulfofustis glycolicus anaerobic 1121409 FQXS00000000.1 Bac0004824 Desulfosporosinus hippei DSM 8344 "Desulfosporosinus hippei DSM 8344 is a Gram-negative, rod-shaped bacterium recognized for its ability to form spores and thrive in anaerobic conditions, with an optimal growth temperature of 29.0°C. As a spore-forming organism, D. hippei has developed mechanisms to withstand unfavorable environmental conditions, allowing it to persist in various habitats. Its anaerobic nature indicates that it metabolizes substrates in the absence of oxygen, which is characteristic of many sulfate-reducing bacteria.↵↵The ability to form spores is particularly significant, as it enables the bacterium to survive in extreme environments where nutrients may be limited or conditions may fluctuate. This trait potentially contributes to its resilience and ecological versatility, allowing D. hippei to inhabit diverse anaerobic niches, including those found in sedimentary environments or within the gastrointestinal tracts of certain organisms.↵↵D. hippei may play a crucial role in biogeochemical cycles, particularly in the reduction of sulfate to sulfide, which can influence the sulfur cycle in its ecological context. By engaging in such metabolic processes, this microbe may contribute to the overall dynamics of microbial communities and nutrient cycling in anaerobic ecosystems, highlighting its potential importance in environmental microbiology." Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus hippei Gram-negative rod anaerobic 29 mesophilic spore-forming 1121419 FNCP00000000.1 Bac0004825 Desulfosporosinus lacus DSM 15449 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus lacus anaerobic 1121420 FQXJ00000000.1 Bac0004826 Desulfofundulus thermosubterraneus DSM 16057 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulfofundulus Desulfofundulus thermosubterraneus anaerobic 1121432 FQZM00000000.1 Bac0004827 Desulfohalovibrio alkalitolerans DSM 16529 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Alkalidesulfovibrio Alkalidesulfovibrio alkalitolerans 1121439 ATHI00000000.1 Bac0004828 Desulfovibrio litoralis DSM 11393 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio litoralis anaerobic 1121455 FRDI00000000.1 Bac0004829 Halodesulfovibrio marinisediminis DSM 17456 "Halodesulfovibrio marinisediminis DSM 17456 is a curved to spiral-shaped bacterium, optimal for growth at 37.0°C, and is classified as non-spore-forming. This organism exhibits a unique morphology that may contribute to its ecological adaptability in specific environments. Its inability to form spores suggests a reliance on stable conditions for survival and reproduction, which may influence its distribution and ecological niche.↵↵The curved and spiral shapes of Halodesulfovibrio marinisediminis may enhance motility and facilitate its interaction with surrounding environments, potentially aiding in nutrient acquisition and colonization of ecological niches. This morphological characteristic could also play a role in its capacity to thrive in specialized habitats, such as marine sediments or environments with specific chemical gradients.↵↵Understanding the growth temperature of 37.0°C indicates that Halodesulfovibrio marinisediminis is adapted to thrive at moderate temperatures, which are commonly found in various marine ecosystems. This temperature preference aligns with the physiological characteristics of many marine bacteria, suggesting that it may be involved in biogeochemical processes within its habitat.↵↵Overall, Halodesulfovibrio marinisediminis DSM 17456 exemplifies the diverse adaptations of marine bacteria, revealing insights into the complex interactions and dynamics of microbial communities in aquatic environments. Further studies could elucidate its role in nutrient cycling and support a better understanding of microbial ecology in marine systems." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio marinisediminis curved/spiral 37 mesophilic non-spore-forming 1121457 FSRG00000000.1 Bac0004830 Dethiosulfatibacter aminovorans DSM 17477 "Dethiosulfatibacter aminovorans DSM 17477 is a Gram-negative, rod-shaped bacterium characterized by its anaerobic metabolism and non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. Its anaerobic requirement indicates that it may be involved in processes that occur in oxygen-poor environments, potentially contributing to biogeochemical cycles in such habitats.↵↵The ability of Dethiosulfatibacter aminovorans to utilize amino compounds in its metabolism could play a significant role in the degradation of organic matter in anaerobic ecosystems. This trait may also suggest its involvement in nutrient cycling, particularly in the breakdown of proteins within sedimentary environments. Overall, the characteristics of this bacterium highlight its potential importance in anaerobic microbial communities and its role in influencing the dynamics of nutrient availability and energy flow in such ecosystems." Bacillati Bacillota Tissierellia Clostridiales Clostridiales_Incertae_Sedis Dethiosulfatibacter Dethiosulfatibacter aminovorans Gram-negative / Gram-positive rod non-motile anaerobic 29 mesophilic non-spore-forming 1121476 FQZL00000000.1 Bac0004831 Devosia limi DSM 17137 "Devosia limi DSM 17137 is a Gram-negative, rod-shaped bacterium that requires aerobic conditions for growth and has an optimal temperature of approximately 29.0°C. This microbe is characterized by its non-spore-forming nature, indicating that it does not produce spores as a means of survival under adverse conditions. The Gram-negative classification suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of many environmental bacteria.↵↵The growth conditions preferred by Devosia limi suggest a possible adaptation to specific ecological niches, potentially including freshwater or soil environments where such temperature and oxygen conditions are prevalent. The aerobic requirement emphasizes its reliance on oxygen for metabolic processes, further indicating its role in nutrient cycling within its habitat. ↵↵Understanding the physiological traits of Devosia limi DSM 17137 enhances our insight into its potential interactions within microbial communities. Its non-spore-forming characteristic may influence its competitive dynamics with other microorganisms that can enter a dormant state under unfavorable conditions. This trait, in combination with its aerobic metabolism, may position Devosia limi as a significant player in the degradation of organic matter in oxygen-rich environments, contributing to the overall health and balance of its ecological niche." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia limi Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1121477 FQVC00000000.1 Bac0004832 Enterococcus cecorum DSM 20682 = ATCC 43198 "Enterococcus cecorum DSM 20682 (ATCC 43198) is a Gram-positive, coccoid-shaped bacterium that thrives at mesophilic temperatures, is classified as a chemoheterotroph, and is a facultative anaerobe. This microbe predominantly colonizes the gastrointestinal tract of various species, particularly in birds, and can also be found in the fecal matter and environments associated with these animals.As a Gram-positive bacterium, Enterococcus cecorum possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the Gram staining procedure, giving it a characteristic purple color. Its coccoid shape allows for the formation of chains or pairs, a common feature of enterococci, facilitating its adaptation to various niches in the gastrointestinal tract. Preferring to grow within a temperature range typically between 20-45°C, it exhibits resilience in various conditions, enabling survival in diverse environmental settings. Being a chemoheterotroph, Enterococcus cecorum relies on organic compounds for both energy and carbon, utilizing a range of substrates to thrive. Its facultative anaerobic nature allows it to grow in both the presence and absence of oxygen, making it versatile in different gut environments.Notably, Enterococcus cecorum has garnered attention due to its potential role in opportunistic infections, particularly in immunocompromised hosts or in conditions where normal gut flora is disrupted. The bacterium's ability to acquire antibiotic resistance genes poses significant clinical challenges, drawing interest in studies focused on its transmission dynamics and pathogenic potential. Moreover, its presence in both avian and mammalian hosts highlights its ecological importance and adaptability across species." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus cecorum Positive Cocci Facultative anaerobe 1121864 AHYS00000000.1 Bac0004833 Geoalkalibacter ferrihydriticus DSM 17813 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter ferrihydriticus 1121915 JWJD00000000.1 Bac0004834 Geosporobacter subterraneus DSM 17957 "Geosporobacter subterraneus DSM 17957 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under anaerobic conditions. This microbe has an optimal growth temperature of 45.0°C, indicating a preference for thermophilic environments. Its ability to form spores suggests a resilience to adverse conditions, allowing it to survive in substrates that may undergo fluctuations in nutrient availability or temperature.↵↵The anaerobic nature of Geosporobacter subterraneus implies a specific ecological niche where it contributes to the degradation of organic matter in oxygen-depleted environments, potentially playing a role in biogeochemical cycles. This characteristic may also enable it to participate in microbial consortia where other anaerobic microorganisms are present, facilitating complex interactions within its habitat.↵↵The adaptation of Geosporobacter subterraneus to high temperatures and low oxygen levels positions it as a candidate for further investigation in biotechnological applications, particularly in processes such as biogas production or waste treatment, where anaerobic conditions are prevalent. Understanding its metabolic pathways and interactions within microbial communities could provide insights into the ecological roles of thermophilic, anaerobic bacteria in natural and engineered systems." Bacillati Bacillota Clostridia Peptostreptococcales Thermotaleaceae Geosporobacter Geosporobacter subterraneus Gram-positive rod non-motile anaerobic 45 thermophilic spore-forming 1121919 FQZV00000000.1 Bac0004835 Brumicola pallidula DSM 14239 = ACAM 615 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Brumicola Brumicola pallidula 1121922 BAEQ00000000.1 Bac0004836 Glaciecola punicea ACAM 611 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Glaciecola punicea 1121923 BAET00000000.1 Bac0004837 Litchfieldella anticariensis FP35 = DSM 16096 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Litchfieldella Litchfieldella anticariensis 1121939 ASTJ00000000.1 Bac0004838 Hymenobacter daecheongensis DSM 21074 "Hymenobacter daecheongensis DSM 21074 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolism and is non-spore-forming. This microorganism has an optimal growth temperature of 16.0°C, indicating a preference for cooler environments, which may suggest its adaptation to specific ecological niches that are characterized by lower thermal conditions. ↵↵Hymenobacter species are generally known for their ability to inhabit a variety of environments, often in association with moist surfaces, which could facilitate interactions with other microbial communities. The aerobic nature of H. daecheongensis implies a reliance on oxygen for its metabolic processes, positioning it within ecosystems where oxygen is readily available. ↵↵Given its temperature preference and aerobic characteristics, H. daecheongensis may play a role in the biogeochemical cycling of nutrients in cold, oxygen-rich habitats, such as freshwater systems or high-altitude environments. Its ecological significance may extend to contributing to the microbial diversity and functionality within such habitats, potentially influencing the overall microbial community dynamics." Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter daecheongensis Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 1121955 FQYN00000000.1 Bac0004839 Hymenobacter psychrotolerans DSM 18569 "Hymenobacter psychrotolerans DSM 18569 is a Gram-negative, rod-shaped bacterium that exhibits psychrotolerant characteristics, with an optimal growth temperature of 16.0°C. This microbe is strictly aerobic, requiring oxygen for its metabolic processes, and it does not form spores, which indicates a reliance on stable environmental conditions for survival and proliferation.↵↵The psychrotolerant nature of Hymenobacter psychrotolerans suggests that it is well-adapted to cold environments, possibly thriving in habitats that experience low temperatures, such as polar regions or high-altitude ecosystems. Its ability to grow optimally at 16.0°C may confer an ecological advantage in such niches, allowing it to exploit resources in environments that are inhospitable to many other microorganisms. ↵↵Given its aerobic metabolism and psychrotolerant capabilities, Hymenobacter psychrotolerans may play a significant role in nutrient cycling and organic matter decomposition in cold ecosystems, contributing to ecological processes that support biodiversity in these specialized habitats. Understanding its physiology and ecological interactions can provide insights into microbial adaptation and resilience in the face of climate change, particularly as temperatures in previously stable cold environments continue to fluctuate." Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter psychrotolerans Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 1121959 FRAS00000000.1 Bac0004840 Kushneria indalinina DSM 14324 "Kushneria indalinina DSM 14324 is a Gram-negative, rod-shaped bacterium that is non-spore-forming and exhibits an aerobic mode of respiration. This microbe thrives optimally at a temperature of 29.0°C, highlighting its potential preference for moderately warm environments. ↵↵As a member of the microbial community, K. indalinina's Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various habitats. The rod shape of this organism is characteristic of many bacterial species, potentially influencing its motility and interaction with the surrounding environment.↵↵The aerobic nature of K. indalinina suggests that it relies on oxygen for its metabolic processes, which may limit its distribution to oxygen-rich environments. This trait may also reflect its adaptation to specific ecological niches where oxygen availability is consistent.↵↵In summary, Kushneria indalinina DSM 14324 represents a distinct group of bacteria adapted to moderate temperatures and aerobic conditions. Understanding the metabolic capabilities and environmental preferences of this organism can provide insights into its role in microbial ecosystems, particularly in environments where aerobic degradation of organic materials is crucial for nutrient cycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Kushneria Kushneria indalinina Gram-negative rod aerobic 29 mesophilic non-spore-forming 1122140 QRDJ00000000.1 Bac0004841 Lachnobacterium bovis DSM 14045 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnobacterium Lachnobacterium bovis rumen 1122142 FNPG00000000.1 Bac0004842 Ligilactobacillus ceti DSM 22408 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ceti 1122146 JQBZ00000000.1 Bac0004843 Schleiferilactobacillus harbinensis DSM 16991 "Schleiferilactobacillus harbinensis DSM 16991 is a rod-shaped lactic acid bacterium characterized by its distinctive morphology and potential applications in various fermentation processes. This organism has been classified within the genus Schleiferilactobacillus, which is known for its role in the production of lactic acid, a key component in many food preservation and fermentation practices.↵↵The rod shape of S. harbinensis is a significant trait that may influence its growth pattern, nutrient uptake, and interactions within microbial communities. This morphological characteristic is often associated with specific metabolic pathways that facilitate the fermentation of carbohydrates, leading to the production of lactic acid and other metabolites. These attributes suggest that S. harbinensis could be beneficial in food microbiology, particularly in the development of probiotic products or fermented foods.↵↵Furthermore, the identification of S. harbinensis DSM 16991 underscores the diversity of lactic acid bacteria and their adaptations to various ecological niches. Its presence in fermented products may indicate a specific role in contributing to the flavor profile and preservation of those foods, thereby enhancing consumer acceptance and nutritional value. Understanding the ecological interactions and metabolic capabilities of S. harbinensis could provide insight into its potential applications in biotechnology and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Schleiferilactobacillus Schleiferilactobacillus harbinensis Rod 1122147 AZFW00000000.1 Bac0004844 Companilactobacillus paralimentarius DSM 13238 = JCM 10415 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus paralimentarius 1122151 AZES00000000.1 Bac0004845 Ligilactobacillus saerimneri DSM 16049 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus saerimneri 1122153 AZFP00000000.1 Bac0004846 Lutispora thermophila DSM 19022 "Lutispora thermophila DSM 19022 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This thermophilic microorganism is adapted to high-temperature environments, which are characteristic of certain anaerobic habitats, such as deep-sea hydrothermal vents or hot springs. The Gram-positive nature of Lutispora thermophila indicates a thick peptidoglycan layer in its cell wall, a trait that could contribute to its resilience in extreme conditions.↵↵The ability to form spores is a crucial survival strategy, allowing Lutispora thermophila to endure harsh environmental fluctuations and potentially facilitating its dispersal in anaerobic ecosystems. This trait may provide advantages in nutrient-limited settings where competition is intense. The specific adaptation to anaerobiosis suggests a specialized metabolic pathway that enables the organism to utilize fermentation or other anaerobic processes for energy production.↵↵Overall, Lutispora thermophila DSM 19022 represents a significant example of microbial life that is finely tuned to thrive in extreme environments, reflecting the complex adaptations that bacteria have evolved to survive and flourish in niches that are inhospitable to many other forms of life. Understanding its physiology and ecology could provide insights into microbial diversity and resilience in extreme habitats." Bacillati Bacillota Clostridia Lutisporales Lutisporaceae Lutispora Lutispora thermophila Gram-positive rod anaerobic 45 thermophilic spore-forming 1122184 FQZS00000000.1 Bac0004847 Malonomonas rubra DSM 5091 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Malonomonas Malonomonas rubra anaerobic 1122189 FQZT00000000.1 Bac0004848 Marinococcus luteus "Marinococcus luteus is a Gram-positive, spherical bacterium that exhibits aerobic metabolism and is non-spore-forming. This microorganism thrives at an optimal growth temperature of 29.0°C, suggesting a preference for moderately warm environments. ↵↵The Gram-positive nature of M. luteus indicates a thick peptidoglycan layer in its cell wall, which may contribute to its structural integrity and resilience under aerobic conditions. As a non-spore-forming organism, M. luteus relies on vegetative means of survival and reproduction, which could influence its ecological niche and interactions within its environment.↵↵Given its optimal growth temperature and aerobic requirement, M. luteus may inhabit specific ecological niches, such as marine environments or other habitats where conditions align with its physiological preferences. This adaptability to aerobic conditions highlights its potential role in biogeochemical cycles, particularly in nutrient cycling in marine ecosystems. Understanding the growth characteristics and environmental preferences of M. luteus can provide insights into its ecological functions and interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Marinococcus Marinococcus luteus Gram-positive sphere aerobic 29 mesophilic non-spore-forming 1122204 FNNC00000000.1 Bac0004849 Marinomonas ushuaiensis DSM 15871 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas ushuaiensis 1122207 JAMB00000000.1 Bac0004850 Moorella mulderi DSM 14980 Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella mulderi anaerobic 1122241 LTBC00000000.1 Bac0004851 Mycolicibacterium hassiacum DSM 44199 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium hassiacum 1122247 NZ_LR026975.1 Bac0004852 Papillibacter cinnamivorans DSM 12816 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Papillibacter Papillibacter cinnamivorans anaerobic 1122930 FWXW00000000.1 Bac0004853 Pasteurella testudinis DSM 23072 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella testudinis aerobic 1122938 FWWV00000000.1 Bac0004854 Pedobacter glucosidilyticus str. DD6b "Pedobacter glucosidilyticus strain DD6b is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This organism is likely adapted to moderate thermal environments, which may influence its ecological niches and metabolic activities. The rod shape of P. glucosidilyticus suggests a potential capacity for motility, although specific details regarding flagellation or movement are not provided. ↵↵As a member of the Pedobacter genus, this strain may play a role in the degradation of complex carbohydrates, as indicated by its species designation, which highlights its glucosidase activity. While the specific metabolic pathways and substrate preferences of strain DD6b are not detailed, the ability to hydrolyze glycosidic bonds can be critical for nutrient cycling in its habitat. ↵↵Understanding the traits of P. glucosidilyticus str. DD6b allows for insights into its potential applications in biotechnological processes, particularly in the degradation of polysaccharides in various environments. This underscores the importance of such microbes in ecological processes, especially in organic matter decomposition and nutrient recycling in soil or aquatic systems. The ecological role of this strain may be significant in maintaining microbial diversity and functionality in its native habitat, contributing to overall ecosystem health." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter glucosidilyticus Gram-negative rod non-motile 29 mesophilic non-spore-forming 1122941 JMTN00000000.1 Bac0004855 Picrophilus oshimae DSM 9789 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Picrophilaceae Picrophilus Picrophilus oshimae 1122961 NC_005877.1 Bac0004856 Prevotella intermedia ATCC 25611 = DSM 20706 str. ATCC 25611 and strain-17 "Prevotella intermedia ATCC 25611 (also known as DSM 20706 str. ATCC 25611 and strain-17) is a Gram-negative anaerobic bacterium belonging to the genus Prevotella. This species is characterized by its inability to utilize oxygen for growth, necessitating anaerobic conditions for optimal proliferation. As a member of the diverse microbial community, Prevotella intermedia is known to thrive in environments such as the human oral cavity and gastrointestinal tract, where it plays a role in the complex interplay of microbial interactions.↵↵The Gram-negative nature of Prevotella intermedia indicates that it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with the host and other microorganisms. Its anaerobic requirement further highlights the importance of specific environmental conditions for its survival and growth, limiting its habitat to oxygen-depleted niches.↵↵Given the ecological role of Prevotella intermedia in the human microbiome, it is suggested that its presence may contribute to the metabolic processes associated with carbohydrate fermentation and the production of short-chain fatty acids, which are important for gut health. Moreover, its adaptation to anaerobic environments underscores the significance of microbial diversity in maintaining homeostasis within the host's microbiota. This adaptability to low-oxygen habitats allows Prevotella intermedia to participate actively in the degradation of dietary components, thereby influencing both nutrient availability and the overall metabolic landscape of its ecological niche." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Anaerobe 1122984 NZ_CP019300.1 Bac0004857 Hoylesella loescheii DSM 19665 = JCM 12249 = ATCC 15930 "Hoylesella loescheii, also known by its designations DSM 19665, JCM 12249, and ATCC 15930, is a Gram-negative anaerobic bacterium. This microbe is characterized by its inability to thrive in the presence of oxygen, which suggests a specialized metabolic pathway adapted to an anaerobic environment. ↵↵The Gram-negative nature of H. loescheii indicates a distinct cell wall structure that includes an outer membrane containing lipopolysaccharides, which may play a role in its interactions with other microbial communities and its resilience in various environments. As an anaerobe, H. loescheii likely relies on fermentation or other anaerobic metabolic processes for energy production, positioning it within specific niches where oxygen levels are limited.↵↵Understanding the physiological traits of Hoylesella loescheii can provide insights into its potential role in anaerobic ecosystems, such as the human gut microbiome, where it may contribute to microbial diversity and the complex interplay of metabolic processes. The presence of anaerobic bacteria like H. loescheii is essential for maintaining the balance of microbial populations and promoting health in anaerobic environments, highlighting the importance of such microorganisms in ecological stability and nutrient cycling." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella loescheii Negative Anaerobe 1122985 JNGW00000000.1 Bac0004858 Pseudobutyrivibrio xylanivorans DSM 14809 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio xylanivorans anaerobic 1123012 FQYQ00000000.1 Bac0004859 Falsiroseomonas stagni DSM 19981 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Falsiroseomonas Falsiroseomonas stagni 1123062 FOSQ00000000.1 Bac0004860 Rubellimicrobium thermophilum DSM 16684 "Rubellimicrobium thermophilum DSM 16684 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This organism is characterized by its optimal growth temperature of 32.0°C and is classified as non-spore-forming. The morphological and physiological traits of R. thermophilum suggest it is adapted to specific environmental niches where the temperature is moderate, likely influencing its metabolic pathways and ecological interactions.↵↵The Gram-negative cell structure implies a complex outer membrane, which could play a role in its interactions with the surrounding environment, including nutrient absorption and resistance to certain antimicrobial agents. Its aerobic nature indicates a reliance on oxygen for energy production, suggesting that R. thermophilum may inhabit well-oxygenated environments.↵↵Understanding the growth characteristics and metabolic requirements of Rubellimicrobium thermophilum can provide insights into its role in microbial communities, particularly in thermophilic ecosystems where temperature regulation is critical. Additionally, the organism's non-spore-forming capability may indicate a reliance on stable conditions for survival and growth, differentiating it from spore-forming thermophiles that can withstand extreme environmental fluctuations. This trait emphasizes the potential ecological niche of R. thermophilum in environments that maintain consistent temperature and oxygen levels, possibly contributing to biogeochemical cycles in such habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Rubellimicrobium Rubellimicrobium thermophilum Gram-negative rod aerobic 32 mesophilic non-spore-forming 1123069 AOLV00000000.1 Bac0004861 Sphingomonas sanxanigenens DSM 19645 = NX02 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sanxanigenens 1123269 NZ_CP011450.1 Bac0004862 Tepidimicrobium xylanilyticum "Tepidimicrobium xylanilyticum is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This thermophilic microorganism is particularly notable for its ability to degrade xylan, a major component of hemicellulose found in plant cell walls, suggesting its potential role in the breakdown of lignocellulosic biomass. ↵↵The spore-forming trait of Tepidimicrobium xylanilyticum allows it to withstand harsh environmental conditions, which may contribute to its persistence in thermophilic environments such as compost heaps or hot springs where organic matter decomposition occurs. The anaerobic requirement indicates that this bacterium likely participates in fermentation processes, potentially producing fermentation products that could influence the microbial community dynamics in its habitat.↵↵Overall, Tepidimicrobium xylanilyticum represents a unique microbial participant in the anaerobic degradation of plant materials, and its ability to efficiently utilize xylan may enhance our understanding of microbial interactions in thermophilic ecosystems and inform biotechnological applications in biomass conversion." Bacillati Bacillota Tissierellia Tissierellales Tepidimicrobiaceae Tepidimicrobium Tepidimicrobium xylanilyticum Gram-positive rod anaerobic 45 thermophilic spore-forming 1123352 FNNG00000000.1 Bac0004863 Tessaracoccus bendigoensis DSM 12906 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus bendigoensis 1123357 FQZG00000000.1 Bac0004864 Tetragenococcus halophilus subsp. halophilus DSM 20339 "Tetragenococcus halophilus subsp. halophilus DSM 20339 is a halophilic cocci bacterium characterized by its spherical morphology. This subspecies is notable for its adaptation to high-salinity environments, which influences its metabolic and physiological properties. As a member of the genus Tetragenococcus, this microbe is capable of thriving in extreme conditions, making it an organism of interest for studies related to microbial life in saline habitats.↵↵The coccal shape of T. halophilus subsp. halophilus contributes to its potential resilience under osmotic stress, which is commonly encountered in its natural habitats. This adaptation may also play a role in its ability to form populations in environments where many other microbial species cannot survive. Research on this subspecies can enhance our understanding of microbial diversity and mechanisms of survival in extreme conditions, particularly in saline ecosystems.↵↵In addition to its structural traits, the ecological significance of T. halophilus subsp. halophilus may extend to its potential contributions to biogeochemical cycles in saline environments, such as salt flats or hypersaline lakes. Its metabolic pathways, while not detailed here, could be integral to the cycling of nutrients in these unique ecosystems, highlighting the importance of halophilic microorganisms in maintaining ecological balance in extreme habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus halophilus Cocci 1123358 PXYA00000000.1 Bac0004865 Thalassospira lucentensis MCCC 1A00383 = DSM 14000 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira lucentensis 1123365 JPVY00000000.1 Bac0004866 Thalassospira xiamenensis M-5 = DSM 17429 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira xiamenensis 1123366 NZ_CP004389.1 Bac0004867 Pseudothermotoga hypogea DSM 11164 = NBRC 106472 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga hypogea anaerobic 1123384 NZ_CP007141.1 Bac0004868 Thiohalospira halophila DSM 15071 "Thiohalospira halophila DSM 15071 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and exhibits optimal growth at 32.0°C. As a non-spore-forming organism, it relies on vegetative reproduction for propagation and survival. The Gram-negative cell wall structure of T. halophila is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various saline environments.↵↵This species is of particular interest in microbiological studies due to its physiological traits, which suggest a potential role in biogeochemical cycles in saline habitats. The aerobic nature of T. halophila indicates its dependency on oxygen for metabolism, potentially linking it to the degradation of organic compounds in oxygen-rich, saline environments. Furthermore, its optimal growth temperature aligns with mesophilic organisms, indicating that it may inhabit environments influenced by moderate thermal conditions, such as coastal areas and salt marshes.↵↵The unique combination of these traits suggests that Thiohalospira halophila DSM 15071 may play a significant role in microbial processes within saline ecosystems, potentially influencing nutrient cycling and the overall microbial community structure in such habitats. Understanding its metabolic pathways and interactions with other microorganisms could provide valuable insights into the ecological dynamics of hypersaline environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiohalospirales Thiohalospiraceae Thiohalospira Thiohalospira halophila Gram-negative rod aerobic 32 mesophilic non-spore-forming 1123397 FOMJ00000000.1 Bac0004869 Tissierella praeacuta DSM 18095 Bacillati Bacillota Tissierellia Tissierellales Tissierellaceae Tissierella Tissierella praeacuta 1123404 FQTY00000000.1 Bac0004870 Vibrio cincinnatiensis DSM 19608 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cincinnatiensis 1123491 FUXB00000000.1 Bac0004871 Vibrio ruber DSM 16370 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ruber 1123498 FULE00000000.1 Bac0004872 Yoonia litorea "Yoonia litorea is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolic capabilities and thrives optimally at a temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, indicating that it does not produce spores as a means of survival under adverse conditions. ↵↵Due to its Gram-negative status, Yoonia litorea possesses a distinctive cell wall structure that includes an outer membrane containing lipopolysaccharides, which may play a role in its interactions with the environment and other microorganisms. The aerobic requirement suggests that Yoonia litorea relies on oxygen for its metabolic processes, potentially influencing its habitat preferences and ecological interactions within oxygen-rich environments.↵↵The optimal growth temperature of 29.0°C suggests that Yoonia litorea may be well-adapted to specific niches, potentially including marine or estuarine environments where such temperatures are prevalent. This adaptation may enable the bacterium to participate actively in biogeochemical cycles, particularly in the degradation of organic materials, contributing to nutrient cycling in its native habitat. The ecological role of Yoonia litorea may be significant, particularly in relation to the microbiomes of coastal ecosystems where temperature and oxygen levels align with its growth requirements." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Yoonia Yoonia litorea Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1123755 FOZM00000000.1 Bac0004873 Marivita geojedonensis str. DPG-138 "Marivita geojedonensis str. DPG-138 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe does not engage in sporulation, indicating a reliance on vegetative growth under suitable environmental conditions. ↵↵The Gram-negative cell wall structure of M. geojedonensis likely contributes to its adaptability in various aquatic environments, where it may participate in nutrient cycling or other ecological interactions. Its rod shape may facilitate motility and colonization in these habitats. ↵↵Given its optimal growth temperature, M. geojedonensis may be particularly well-suited for environments that reflect temperate conditions, potentially influencing its ecological roles in microbial communities. Future studies could explore its metabolic capabilities and interactions with other microorganisms, providing further insight into its biological significance within its native ecosystem." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Marivita Marivita geojedonensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1123756 JFKC00000000.1 Bac0004874 Halomonas sp. QHL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. QHL1 1123773 MINL00000000.1 Bac0004875 Chryseobacterium carnipullorum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium carnipullorum 1124835 FRCD00000000.1 Bac0004876 Pseudomonas protegens CHA0 "Pseudomonas protegens CHA0 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a heterotroph, deriving its energy from organic compounds, and is an obligate aerobe, requiring oxygen for its metabolic processes. P. protegens CHA0 thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions.↵↵This species is found in diverse habitats, suggesting its adaptability and potential ecological roles in various environments. Pseudomonas protegens is well-studied for its biocontrol potential, particularly in agricultural contexts, where it may interact with plant roots and contribute to soil health. Its adaptability to different habitats may reflect its ability to utilize a wide range of organic substrates, aiding its survival and proliferation in fluctuating ecological niches.↵↵The presence of Pseudomonas protegens CHA0 in multiple environments underscores its significance in microbial ecology, particularly in soil ecosystems where it may play a role in nutrient cycling and plant-microbe interactions. Understanding the ecological functions of this bacterium can provide insights into its potential applications in sustainable agriculture and biocontrol strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas protegens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1124983 NC_021237.1 Bac0004877 Candidatus Pseudothioglobus singularis PS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Pseudothioglobaceae Candidatus Pseudothioglobus Candidatus Pseudothioglobus singularis 1125411 NZ_CP006911.1 Bac0004878 Klebsiella pneumoniae subsp. pneumoniae HS11286 "Klebsiella pneumoniae subsp. pneumoniae HS11286 is a Gram-negative, nonsporulating bacterium characterized by its rod shape and versatile cell arrangement, which can be observed in chains, pairs, or as single cells. This strain optimally thrives at 37.0°C, reflecting its adaptation to host-associated habitats, where it commonly resides. As a chemoheterotroph, K. pneumoniae HS11286 utilizes organic compounds as both its energy and carbon sources, allowing it to metabolize a variety of substrates in the complex environments found within host organisms. ↵↵Additionally, this bacterium is classified as a facultative anaerobe, which enables it to survive and grow in both aerobic and anaerobic conditions. This metabolic flexibility is particularly advantageous in dynamic biological systems where oxygen availability may fluctuate. The ability of K. pneumoniae subsp. pneumoniae HS11286 to thrive in diverse oxygen conditions may contribute to its resilience in host environments and its potential interactions with the host microbiome. Overall, the traits of this strain underscore its ecological adaptability and highlight its role in microbial communities associated with living hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1125630 NC_016846.1 Bac0004879 Treponema medium ATCC 700293 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema medium 1125700 ATFE00000000.1 Bac0004880 Treponema socranskii subsp. paredis ATCC 35535 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema socranskii 1125701 ATFD00000000.1 Bac0004881 Treponema vincentii F0403 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii 1125702 ATFC00000000.1 Bac0004882 Actinomyces massiliensis F0489 "Actinomyces massiliensis F0489 is a Gram-positive, rod-shaped bacterium that exhibits non-spore-forming characteristics and demonstrates optimal growth at a temperature of 37.0°C. This microbe belongs to the genus Actinomyces, which is recognized for its role in diverse environments, including human-associated microbiomes. ↵↵The Gram-positive nature of A. massiliensis F0489 indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this bacterial group. The rod shape suggests that it may be involved in specific interactions with its environment, potentially influencing its role in microbial communities. Its non-spore-forming trait implies that A. massiliensis F0489 likely relies on other survival strategies under adverse conditions, such as forming biofilms or utilizing nutritional resources efficiently.↵↵The optimal temperature of 37.0°C aligns with the typical physiological conditions found in warm-blooded hosts, suggesting that A. massiliensis F0489 may be adapted to thrive in the human body or similar warm environments. This characteristic may provide insights into its ecological niche and potential associations with other microorganisms in host-associated microbiomes.↵↵Overall, the traits of Actinomyces massiliensis F0489 not only highlight its structural and growth preferences but also suggest a potential role in maintaining the balance of microbial communities in warm environments, which could have implications for understanding its interactions within a host or ecosystem." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces massiliensis Gram-positive rod 37 mesophilic non-spore-forming 1125718 AKFT00000000.1 Bac0004883 Porphyromonas sp. oral taxon 279 str. F0450 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 279 1125723 ALKJ00000000.1 Bac0004884 Rothia aeria F0474 "Rothia aeria F0474 is a Gram-positive, coccoid-shaped bacterium that thrives in mesophilic temperature ranges, categorizing it as a facultative anaerobe and a heterotroph. This microbe is part of the natural flora of various body sites across multiple species, typically colonizing the human oral cavity, respiratory tract, and gastrointestinal tract. As a Gram-positive organism, Rothia aeria F0474 possesses a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram staining process, giving it a characteristic purple appearance under a microscope. Its coccoid shape allows for close packing and efficient colonization in diverse environments, particularly in mucosal surfaces, which aligns well with its presence in the human microbiota. Being mesophilic, Rothia aeria F0474 prefers moderate temperatures, typically around 30 to 37 degrees Celsius, which reflects the conditions found in the human body. As a facultative anaerobe, this microbe can adapt to both aerobic and anaerobic conditions, allowing it to thrive in various niches within the host. Its classification as a heterotroph indicates that it derives its energy and carbon from organic sources, utilizing carbohydrates and proteins present in its habitat. Rothia aeria F0474 plays a significant role in maintaining the balance of the microbial ecosystem in the oral cavity and respiratory tract. It contributes to the degradation of food particles, which can impact oral health. Additionally, research has indicated that it may have potential implications in human health, including its role in immune modulation and the prevention of pathogenic microbial colonization. Understanding this microbe's functions and interactions with the host may provide insights into the complex dynamics of the human microbiome and its influence on overall health." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia aeria Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living 1125724 AJJQ00000000.1 Bac0004885 Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema socranskii 1125725 AUZJ00000000.1 Bac0004886 Corynebacterium pyruviciproducens ATCC BAA-1742 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pyruviciproducens 1125779 ATBY00000000.1 Bac0004887 Pseudorhizobium banfieldiae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Pseudorhizobium Pseudorhizobium banfieldiae 1125847 NZ_FO082821.1 Bac0004888 Limimaricola cinnabarinus str. XM1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Limimaricola Limimaricola cinnabarinus 1125964 NQWH00000000.1 Bac0004889 Bradyrhizobium sp. DOA1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. DOA1 1126616 JXJM00000000.1 Bac0004890 Paenibacillus beijingensis str. DSM 24997 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus beijingensis 1126833 NZ_CP011058.1 Bac0004891 Nocardia cyriacigeorgica GUH-2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia cyriacigeorgica 1127134 NC_016887.1 Bac0004892 Bacillus sp. JS Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. JS 1127744 NC_017743.1 Bac0004893 Sinorhizobium fredii CCBAU 25509 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 1128330 NZ_CP029452.1 Bac0004894 Sinorhizobium fredii CCBAU 45436 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 1128331 NZ_CP029235.1 Bac0004895 Sinorhizobium fredii CCBAU 83666 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 1128334 NZ_CP023072.1 Bac0004896 Gottschalkia acidurici 9a "Gottschalkia acidurici 9a is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores, positioning it as a resilient organism capable of surviving in challenging environments. This microbe thrives optimally at a temperature of 32.0°C and exhibits anaerobic metabolism, relying on organic compounds as an energy source, which categorizes it as both an organotroph and a chemotroph.↵↵The spore-forming capability of Gottschalkia acidurici 9a suggests an adaptation to fluctuating environmental conditions, allowing it to withstand periods of nutrient limitation or other stressors that would be detrimental to non-sporulating organisms. Its preference for an anaerobic environment indicates potential niches where oxygen is limited, such as in certain soil or sediment layers, or within the digestive tracts of anaerobic organisms.↵↵This bacterium's metabolic traits position it as a significant player in organic matter decomposition within its ecological niche, potentially contributing to nutrient cycling. Furthermore, the capability of Gottschalkia acidurici 9a to utilize a variety of organic substrates enhances its ecological versatility, suggesting its involvement in biogeochemical processes that are crucial for ecosystem functioning in anaerobic habitats." Bacillati Bacillota Tissierellia Tissierellales Gottschalkiaceae Gottschalkia Gottschalkia acidurici Gram-positive rod motile anaerobic 32 organotroph; chemotroph mesophilic spore-forming 1128398 NC_018664.1 Bac0004897 Rhizobium phaseoli Ch24-10 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium phaseoli 1128399 AHJU00000000.2 Bac0004898 Paraglaciecola mesophila KMM 241 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Paraglaciecola mesophila aerobic 1128912 BAEP00000000.1 Bac0004899 Nitrolancea hollandica Lb str. none Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Nitrolancea Nitrolancea hollandica 1129897 CAGS00000000.1 Bac0004900 Alkalibacterium gilvum "Alkalibacterium gilvum is a Gram-positive, rod-shaped bacterium characterized by its microaerophilic oxygen requirement and an optimal growth temperature of 25.0°C. This organism does not form spores, which may influence its survival strategies in various environments. As a member of the microbial community, Alkalibacterium gilvum exhibits traits that suggest a potential adaptation to alkaline conditions, aligning with its nomenclature, which indicates a preference for higher pH levels.↵↵The microaerophilic nature of Alkalibacterium gilvum implies that it thrives in environments with limited oxygen availability, which may be found in specific ecological niches such as soils or sediments where organic matter is decomposing. Its inability to form spores suggests a reliance on favorable environmental conditions for survival, as it may be more susceptible to adverse conditions compared to spore-forming organisms. ↵↵The optimal growth temperature of 25.0°C further indicates that Alkalibacterium gilvum is likely to inhabit mesophilic environments, potentially contributing to biogeochemical cycles in temperate ecosystems. The specific combination of its Gram-positive structure, rod shape, and microaerophilic lifestyle points to its role in niche-specific processes, such as the degradation of organic compounds in environments with restricted oxygen, thereby influencing nutrient cycling and microbial community dynamics." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alkalibacterium Alkalibacterium gilvum Gram-positive rod non-motile microaerophile 25 mesophilic non-spore-forming 1130080 FNYW00000000.1 Bac0004901 Dehalobacter sp. CF Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Dehalobacter Dehalobacter sp. CF 1131462 NC_018867.1 Bac0004902 Paenibacillus dendritiformis C454 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus dendritiformis 1131935 AHKH00000000.1 Bac0004903 Chromatocurvus halotolerans str. DSM 23344 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Chromatocurvus Chromatocurvus halotolerans 1132028 SLWX00000000.1 Bac0004904 Halococcus hamelinensis 100A6 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus hamelinensis 1132509 AOMB00000000.1 Bac0004905 Plasticicumulans lactativorans str. DSM 25287 "Plasticicumulans lactativorans str. DSM 25287 is a Gram-negative, spherical bacterium that thrives under aerobic conditions at an optimal temperature of 37.0°C. This species has been characterized for its unique metabolic capabilities, particularly in relation to the degradation of plastic materials, which may contribute to bioremediation efforts in environments contaminated with plastics. ↵↵The Gram-negative nature of P. lactativorans indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this classification. Its spherical morphology suggests a potential adaptability to various environments, possibly allowing for efficient nutrient absorption and interaction with other microbial communities.↵↵The aerobic requirement of this strain highlights its dependency on oxygen for growth and metabolic processes, which may influence its distribution in natural habitats and its role in biogeochemical cycles. The optimal growth temperature of 37.0°C aligns with the typical conditions found in mammalian hosts, suggesting that P. lactativorans may have evolved mechanisms to survive in environments influenced by biological activity.↵↵In summary, the unique traits of Plasticicumulans lactativorans str. DSM 25287, particularly its spherical shape and aerobic metabolism, may position it as a significant player in the microbial degradation of plastics, thereby offering insights into microbial strategies for managing plastic waste in diverse ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Competibacterales Candidatus Competibacteraceae Plasticicumulans Plasticicumulans lactativorans Gram-negative sphere aerobic 37 mesophilic 1133106 SLWY00000000.1 Bac0004906 Rickettsia endosymbiont of Ixodes pacificus Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia endosymbiont of Ixodes pacificus 1133329 LAOP00000000.1 Bac0004907 Brachyspira pilosicoli B2904 "Brachyspira pilosicoli B2904 is a Gram-negative, spiral-shaped bacterium that thrives in a mesophilic temperature range, is classified as a chemoheterotroph, and is known for its microaerophilic growth characteristics. This organism primarily colonizes the intestines of various animals, particularly in the gastrointestinal tracts of pigs, poultry, and dogs, contributing to significant veterinary concerns related to gastrointestinal diseases. As a Gram-negative bacterium, B. pilosicoli possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that can influence virulence and immune response interactions. Its spiral shape aids in mobility and colonization within viscous environments like the intestines, where it attaches to epithelial cells. The mesophilic temperature preference indicates that B. pilosicoli flourishes best at moderate temperatures, typically between 30°C and 37°C, coinciding with the body temperatures of its hosts. Being a chemoheterotroph, B. pilosicoli derives energy by metabolizing organic compounds, which it utilizes for growth and reproduction. It does not rely on sunlight or inorganic substances, making it dependent on host-derived nutrients. Its microaerophilic nature means it requires oxygen at lower levels than those found in the atmosphere, enabling it to thrive in the oxygen-poor environments typically found in the intestines. Brachyspira pilosicoli B2904 is notable for its role in conditions such as gastrointestinal dysbiosis and is a significant contributor to ""intestinal spirochetosis."" This bacterium can elicit inflammatory responses, leading to various health issues in infected hosts. Recent studies are exploring its pathogenic mechanisms and potential links to zoonotic diseases, highlighting its relevance in both veterinary and public health contexts." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli Negative Anaerobe 1133568 NC_018607.1 Bac0004908 Liquorilactobacillus vini DSM 20605 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus vini 1133569 AYYX00000000.1 Bac0004909 Nocardia brasiliensis ATCC 700358 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia brasiliensis 1133849 NC_018681.1 Bac0004910 Ornatilinea apprima str. P3M-1 "Ornatilinea apprima strain P3M-1 is a Gram-negative, non-spore-forming bacterium that thrives optimally at a temperature of 45.0 °C. This thermophilic microbe is characterized by its ability to grow in elevated temperatures, indicating a potential adaptation to geothermal environments, such as hot springs or composting processes, where such conditions are prevalent. ↵↵The Gram-negative cell wall structure of O. apprima P3M-1 suggests a complexity in its membrane composition, which may confer specific advantages related to nutrient uptake and environmental resilience. The absence of sporulation indicates a reliance on vegetative growth for reproduction and survival, which may influence its ecological interactions and niche specialization. ↵↵In exploring the biological role of Ornatilinea apprima str. P3M-1 within its habitat, its thermophilic nature may suggest involvement in the degradation of organic materials at high temperatures, potentially contributing to biogeochemical cycling in thermally active environments. Understanding the physiological and metabolic capabilities of this strain could provide insights into its ecological function, particularly in nutrient recycling processes in extreme habitats." Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Ornatilinea Ornatilinea apprima Gram-negative non-motile 45 thermophilic non-spore-forming 1134406 LGCL00000000.1 Bac0004911 Thauera humireducens str. SgZ-1 "Thauera humireducens str. SgZ-1 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolism. This strain thrives optimally at a temperature of 32.0°C and does not form spores, indicating its reliance on alternative survival strategies under varying environmental conditions. ↵↵As a facultative organism, T. humireducens str. SgZ-1 is capable of switching between aerobic respiration in the presence of oxygen and anaerobic respiration when oxygen is scarce, allowing it to adapt to fluctuating redox conditions in its environment. This versatility may enable the strain to occupy diverse ecological niches, particularly in environments rich in organic substrates where oxygen levels can vary dramatically, such as in sediments or within biofilms.↵↵The unique metabolic capabilities of T. humireducens str. SgZ-1 may also suggest its potential role in biogeochemical cycling, particularly in the degradation of organic matter and the reduction of electron acceptors in anaerobic conditions. Such traits could be instrumental in the development of bioremediation strategies, particularly for the treatment of contaminated environments where organic pollutants are present. Understanding the metabolic pathways and ecological interactions of this strain could provide insights into its role in environmental microbiology and its potential applications in ecosystem management." Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera humireducens Gram-negative rod facultative aerobe/anaerobe 32 mesophilic non-spore-forming 1134435 NZ_CP014646.1 Bac0004912 Microcystis aeruginosa TAIHU98 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1134457 ANKQ00000000.1 Bac0004913 Cellvibrio sp. BR Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrio Cellvibrio sp. BR 1134474 AICM00000000.1 Bac0004914 Klebsiella michiganensis str. 10-5250 "Klebsiella michiganensis str. 10-5250 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe that thrives optimally at 37.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, positioning it as a versatile organism capable of inhabiting diverse environments. The ability to grow in both aerobic and anaerobic conditions enhances its ecological adaptability, allowing it to exploit various niches where organic substrates are available.↵↵Klebsiella species are commonly associated with environments rich in organic matter, which supports their role in nutrient cycling. Their facultative anaerobic metabolism suggests a competitive advantage in fluctuating oxygen conditions, enabling them to inhabit multiple habitats ranging from soil to clinical settings. This physiological versatility may also contribute to their interactions with other microbial communities, influencing ecosystem dynamics. ↵↵Given its broad habitat range and metabolic capabilities, Klebsiella michiganensis str. 10-5250 may play a significant role in organic matter decomposition and nutrient recycling in its environment, underscoring the importance of understanding such microorganisms in ecological and biogeochemical studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 AGDP00000000.1 Bac0004915 Klebsiella michiganensis str. KMISG1 "Klebsiella michiganensis str. KMISG1 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe that thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, it derives energy from organic compounds, making it adaptable to various environments. The strain is capable of existing in multiple habitats, suggesting a versatile ecological niche that enables it to exploit a range of organic substrates for growth.↵↵In environments where oxygen is present, K. michiganensis str. KMISG1 can utilize aerobic respiration, but it is also capable of switching to anaerobic metabolism when oxygen levels are low. This dual metabolic capability allows the strain to inhabit diverse ecological settings, including soil, water, and potentially within plant or animal hosts, although specific associations are not detailed in the provided traits.↵↵The adaptability of K. michiganensis str. KMISG1 to different environments and its metabolic flexibility may play a significant role in its survival and proliferation in fluctuating ecological conditions. This resilience highlights the importance of understanding such microbes, as they can influence nutrient cycling and other ecological processes in their respective habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 NZ_CM011641.1 Bac0004916 Klebsiella michiganensis str. M5al "Klebsiella michiganensis str. M5al is a Gram-negative, rod-shaped bacterium that exhibits characteristics typical of the Klebsiella genus. This strain is a nonsporulating organism, indicating that it does not form spores as a means of survival under adverse conditions. K. michiganensis str. M5al is classified as a chemoheterotroph, which means it derives its energy from organic compounds, utilizing various substrates for growth and metabolism.↵↵Optimal growth for this bacterium occurs at a temperature of 37.0°C, suggesting a preference for conditions similar to those found in warm-blooded hosts, although it can inhabit a range of environments. As a facultative anaerobe, K. michiganensis str. M5al can thrive in both the presence and absence of oxygen, allowing it to adapt to diverse ecological niches.↵↵The broad habitat range of K. michiganensis str. M5al may reflect its versatility in utilizing different organic materials and its ability to survive in varying oxygen conditions. This adaptability highlights the potential ecological significance of this strain, possibly contributing to its role in nutrient cycling within its environments. Further studies could elucidate its specific interactions and functions in various habitats, enhancing our understanding of its ecological contributions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 LWKU00000000.1 Bac0004917 Enterococcus faecalis ERV129 "Enterococcus faecalis ERV129 is a Gram-positive, coccoid bacterium that is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This microbe is a chemoorganotroph, utilizing organic compounds as its primary energy source, which reflects its adaptability to various habitats. E. faecalis ERV129 has an optimal growth temperature of 37.0°C, a condition that aligns with the typical physiological temperature of warm-blooded hosts, suggesting a potential association with mammalian environments.↵↵The diverse habitats of E. faecalis ERV129 indicate its ecological versatility, as it can be found in a range of environments, from soil and water to the gastrointestinal tracts of animals and humans. This adaptability may contribute to its resilience in fluctuating conditions, enhancing its survival and distribution across different ecological niches. Furthermore, the presence of E. faecalis in various ecosystems underscores its potential role in nutrient cycling and microbial community dynamics.↵↵Overall, the traits of E. faecalis ERV129 highlight its importance in both environmental microbiology and potential interactions within host organisms, suggesting a complex relationship that merits further investigation to fully understand its ecological significance." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1134787 ALZL00000000.1 Bac0004918 Rhizobium azibense str. GR42 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium azibense 1136135 SMBJ00000000.1 Bac0004919 Mycobacterium pseudoshottsii JCM 15466 "Mycobacterium pseudoshottsii JCM 15466 is an ovoid, non-spore-forming bacterium that thrives optimally at a temperature of 25.0°C. This species is part of the Mycobacterium genus, known for its complex lipid-rich cell wall and its ability to survive in various environments. The ovoid shape of M. pseudoshottsii is characteristic of certain mycobacterial species, which can exhibit diverse morphological features.↵↵As a non-spore-forming organism, M. pseudoshottsii may rely on alternative survival strategies in unfavorable conditions, which could include forming biofilms or utilizing metabolic pathways that allow it to endure environmental stressors. While specific pathogenicity has not been established, the ecological role of M. pseudoshottsii may involve interactions within its habitat, potentially contributing to nutrient cycling or influencing microbial community dynamics.↵↵Understanding the growth conditions and morphological characteristics of M. pseudoshottsii can provide insights into its ecological niche and adaptability. Its optimal growth temperature suggests a preference for temperate environments, which may influence its distribution and interactions with other microbial species. Further research into its ecological interactions could illuminate the role of M. pseudoshottsii in its native habitat, possibly shedding light on its contributions to microbial diversity and ecosystem function." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium pseudoshottsii ovoid 25 mesophilic non-spore-forming 1136880 BCND00000000.1 Bac0004920 Calothrix sp. HK-06 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. HK-06 1137096 MRCD00000000.1 Bac0004921 Lactococcus lactis subsp. lactis A12 "Lactococcus lactis subsp. lactis A12 is a Gram-positive, nonsporulating coccus that thrives under facultative anaerobic conditions, with an optimal growth temperature of 40.0°C. This strain is part of the diverse Lactococcus genus, which is commonly associated with dairy fermentation processes. The ability to grow in multiple habitats highlights its adaptability and potential utility in various biotechnological applications, particularly in the production of fermented dairy products.↵↵As a facultative anaerobe, L. lactis subsp. lactis A12 can metabolize substrates in both the presence and absence of oxygen, making it versatile in different environmental conditions. This trait is particularly advantageous in fermentation environments where oxygen levels may fluctuate. The strain's growth at elevated temperatures suggests a potential preference for thermophilic conditions, which may be exploited in industrial fermentation practices to enhance efficiency and product yields.↵↵In summary, the combination of its Gram-positive morphology, cocci shape, nonsporulating nature, and facultative anaerobic metabolism, alongside its adaptability to various habitats, positions Lactococcus lactis subsp. lactis A12 as a valuable organism in food biotechnology. Its ecological success may be attributed to its ability to thrive in diverse conditions, thereby contributing to the fermentation processes that are pivotal in dairy and other fermented food industries." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1137134 CBLU000000000.1 Bac0004922 Xanthomarina gelatinilytica str. AK20 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Xanthomarina Xanthomarina gelatinilytica 1137281 ANLA00000000.1 Bac0004923 Xanthomarina gelatinilytica Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Xanthomarina Xanthomarina gelatinilytica 1137281 DPRK00000000.1 Bac0004924 Endozoicomonas numazuensis "Endozoicomonas numazuensis is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and non-spore-forming nature. This microbe has an optimal growth temperature of 25.0°C, indicating a preference for moderate environmental conditions. Its ability to thrive in both aerobic and anaerobic environments suggests a versatile adaptation that may facilitate its survival in varied ecological niches.↵↵The physiological traits of E. numazuensis position it as an organism of interest in studies related to microbial ecology, particularly in marine environments where it may inhabit the microbiota of marine organisms. Given its Gram-negative status, it is likely to possess an outer membrane that could contribute to its interactions with other microbial communities and its environment. The non-spore-forming characteristic indicates that this bacterium may rely on vegetative growth strategies, which could affect its resilience to environmental stressors compared to spore-forming counterparts.↵↵An intriguing aspect of E. numazuensis is its potential role in the microbiomes of marine hosts, where it may participate in nutrient cycling or symbiotic relationships. This positions the species as a subject for further research into its ecological contributions and interactions within its habitat, possibly shedding light on the dynamics of microbial life in marine ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Endozoicomonas Endozoicomonas numazuensis Gram-negative rod non-motile facultative aerobe/anaerobe 25 mesophilic non-spore-forming 1137799 JOKH00000000.1 Bac0004925 Geodermatophilus siccatus Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus siccatus aerobic 1137991 FNHE00000000.1 Bac0004926 Geodermatophilus africanus Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus africanus aerobic 1137993 FNOT00000000.1 Bac0004927 Geodermatophilus saharensis Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus saharensis aerobic 1137994 FZOH00000000.1 Bac0004928 Rhizobium aethiopicum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium aethiopicum 1138170 FMAJ00000000.1 Bac0004929 Priestia megaterium NCT-2 "Priestia megaterium NCT-2 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive as an aerobe. This microbe exhibits a versatile habitat preference, suggesting it can adapt to various environmental conditions. The sporulation capability of P. megaterium NCT-2 indicates a strategy for survival in fluctuating environments, allowing it to withstand adverse conditions by forming resilient spores. ↵↵Being an aerobe, P. megaterium NCT-2 requires oxygen for growth, which aligns with its ability to inhabit diverse ecological niches, potentially including soil and water environments, where oxygen availability is sufficient. The Gram-positive nature of this bacterium, characterized by a thick peptidoglycan layer in its cell wall, may also confer structural advantages, such as enhanced resistance to certain physical and chemical stresses.↵↵The adaptability of P. megaterium NCT-2 highlights its potential role in nutrient cycling within its habitats, as its metabolic processes may contribute to the breakdown of organic matter and the availability of nutrients for other organisms. Furthermore, its sporulation ability may facilitate its persistence in environments that experience seasonal or episodic changes. Understanding the ecological roles of such microorganisms can provide insight into their contributions to ecosystem dynamics and their potential applications in biotechnology and environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1138452 NZ_CP032534.1 Bac0004930 Sediminihabitans luteus str. DSM 25478 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Sediminihabitans Sediminihabitans luteus 1138585 PGFE00000000.1 Bac0004931 Mycobacterium intracellulare subsp. yongonense 05-1390 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 1138871 NC_020275.1 Bac0004932 Enterococcus faecium EnGen0020 str. E1574 "Enterococcus faecium EnGen0020 str. E1574 is a Gram-positive, cocci-shaped bacterium classified within the Enterococcus genus. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The ability to utilize oxygen when available while also capable of surviving in its absence underscores its ecological versatility, which is a hallmark of many Enterococcus species. ↵↵E. faecium is often found in various habitats, including the gastrointestinal tracts of mammals, making it an important member of the gut microbiota. Its Gram-positive nature is indicative of a thicker peptidoglycan layer in its cell wall, which contributes to its resilience in diverse environmental conditions. The cocci morphology suggests that these bacteria may form pairs or chains, potentially facilitating interactions with other microbial species within their ecological niches.↵↵The facultative anaerobic characteristic of E. faecium EnGen0020 str. E1574 implies a metabolic flexibility that may play a role in its adaptability to changing environments, such as nutrient availability and oxygen levels. This strain’s traits position it as a significant organism for studying microbial dynamics in complex ecosystems. Its presence in the gut microbiome may influence nutrient absorption and contribute to maintaining gut health, highlighting its potential role in symbiotic relationships with host organisms." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1138897 AHWY00000000.1 Bac0004933 Enterococcus faecium EnGen0033 str. E1972 "Enterococcus faecium EnGen0033 str. E1972 is a Gram-positive coccus that exhibits facultative anaerobic metabolism. This strain belongs to the Enterococcus genus, characterized by its spherical shape and ability to thrive in varying oxygen conditions. As a facultative anaerobe, E. faecium EnGen0033 str. E1972 can utilize oxygen for respiration when available but can also switch to fermentation pathways in anaerobic environments, allowing it to inhabit diverse ecological niches.↵↵Enterococcus species, including E. faecium, are commonly found in the gastrointestinal tracts of humans and animals, where they play a role in the gut microbiome. Their ability to adapt to different oxygen levels may contribute to their persistence in various habitats, including the human gut and in environments where oxygen availability fluctuates. The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, which is a characteristic feature of many bacteria within the Firmicutes phylum.↵↵The adaptability of E. faecium EnGen0033 str. E1972, combined with its ecological versatility, underscores its potential role in microbial communities, particularly in terms of nutrient cycling and maintaining gut health. Further studies could elucidate the specific interactions this strain has within its native microbiome and its contributions to overall microbial balance in its environment." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1138916 AHXR00000000.1 Bac0004934 Enterococcus dispar ATCC 51266 "Enterococcus dispar ATCC 51266 is a gram-positive, cocci-shaped bacterium that thrives in a mesophilic temperature range, classified as a chemoheterotroph. This versatile microbe can be found in various body sites, including the gastrointestinal tract, oral cavity, and urogenital region, across a diverse range of hosts including humans and mammals. As a facultative anaerobe, Enterococcus dispar is capable of growth in both the presence and absence of oxygen, utilizing fermentation pathways when oxygen is scarce, which allows it to colonize a variety of environments effectively. The gram-positive nature of Enterococcus dispar is indicative of its thick peptidoglycan layer, which provides structural integrity and protection against environmental stressors. Its spherical shape contributes to its aggregation in biofilms, particularly in nutrient-rich areas such as the gut. The mesophilic preference of Enterococcus dispar, with optimal growth around 30-37°C, aligns with the body temperature of most warm-blooded animals, making it well-adapted for its ecological niches. As a chemoheterotroph, Enterococcus dispar relies on organic compounds for carbon and energy, utilizing the diverse substrates available in the human microbiome. This metabolic flexibility is essential for its survival in differing microenvironments. Furthermore, Enterococcus dispar plays a dual role in human health; while it can be a beneficial member of the gut flora aiding in digestion and nutrient absorption, it is also associated with opportunistic infections, especially in immunocompromised individuals. Its ability to develop antibiotic resistance poses a significant challenge in clinical settings, highlighting the need for careful monitoring and management of Enterococcus species in healthcare." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus dispar Positive Cocci Facultative anaerobe 1139219 AHYR00000000.1 Bac0004935 Enterococcus avium ATCC 14025 "Enterococcus avium ATCC 14025 is a Gram-positive, cocci-shaped bacterium that thrives in a mesophilic temperature range, making it comfortable at moderate temperatures, typically between 20-45°C. It is classified as a heterotroph, obtaining its nutrients from organic compounds, and is a facultative anaerobe, meaning it can survive in both aerobic and anaerobic environments. This characteristic allows it to adapt to various ecological niches, including the gastrointestinal tracts of various species, as well as in soil, water, and plant materials. The Gram-positive nature of Enterococcus avium indicates a thick peptidoglycan layer in its cell wall, which contributes to its resilience against environmental stresses, such as desiccation and some antibacterial agents. This structural characteristic also contributes to its role as a commensal organism in the intestines of warm-blooded animals, including humans. Its cocci shape allows for efficient division and aggregation, forming pairs or chains that can enhance its survival capabilities under nutrient-limited conditions. Enterococcus avium has been noted for its role in food spoilage and its potential involvement in opportunistic infections, particularly in immunocompromised individuals. While it is generally considered less virulent than other Enterococcus species, its ability to acquire antibiotic resistance genes poses significant public health concerns. Research into this microbe has also revealed its participation in the fermentation of certain carbohydrates, contributing to flavor development in various dairy products. Moreover, its environmental persistence raises questions about its ecological role and adaptations in various habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus avium Positive Cocci Facultative anaerobe 1140002 AHYV00000000.1 Bac0004936 Providencia sneebia DSM 19967 "Providencia sneebia DSM 19967 is a Gram-negative, aerobic rod-shaped bacterium. This organism falls within the Enterobacteriaceae family and is characterized by its rod morphology, which is typical for many members of this family. As an aerobic microbe, P. sneebia requires oxygen for its metabolic processes, positioning it within environments where oxygen availability is sufficient for growth.↵↵The Gram-negative nature of P. sneebia indicates that it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interaction with the surrounding environment and influence its responses to external stressors. The presence of these structural components is often associated with specific physiological traits, such as resistance to certain antibiotics and the ability to thrive in competitive ecological niches.↵↵While the specific ecological role of Providencia sneebia DSM 19967 remains to be fully elucidated, its aerobic metabolism suggests potential involvement in nutrient cycling within its habitat. This characteristic may enable it to occupy specific niches where aerobic conditions are prevalent, thus contributing to the microbial diversity and metabolic functions of those ecosystems. Further studies could provide insights into its ecological interactions and potential applications in biotechnology or environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia sneebia Gram-negative rod aerobic 1141660 NZ_CM001854.1 Bac0004937 Streptomyces hoynatensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hoynatensis 1141874 RBAL00000000.1 Bac0004938 Sphingomonas guangdongensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas guangdongensis 1141890 OBMI00000000.1 Bac0004939 Phycisphaera mikurensis NBRC 102666 Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Phycisphaera Phycisphaera mikurensis 1142394 NC_017081.1 Bac0004940 Chlamydia gallinacea 08-1274/3 Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia gallinacea 1143323 NZ_CP015840.1 Bac0004941 Rhizobium sp. AP16 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. AP16 1144306 AJVM00000000.1 Bac0004942 Sphingobium sp. AP49 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. AP49 1144307 NZ_CP124576.1 Bac0004943 Flavobacterium sp. CF136 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. CF136 1144313 AKJZ00000000.1 Bac0004944 Polaromonas sp. CF318 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. CF318 1144318 AKIV00000000.1 Bac0004945 Herbaspirillum sp. CF444 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum sp. CF444 1144319 AKJW00000000.1 Bac0004946 Pantoea sp. GM01 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. GM01 1144320 AKIU00000000.1 Bac0004947 Pseudomonas sp. GM24 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM24 1144326 AKJR00000000.1 Bac0004948 Pseudomonas sp. GM33 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM33 1144329 AKJO00000000.1 Bac0004949 Pseudomonas sp. GM49 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM49 1144331 AKJL00000000.1 Bac0004950 Pseudomonas sp. GM50 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM50 1144332 AKJK00000000.1 Bac0004951 Pseudomonas sp. GM55 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM55 1144333 AKJJ00000000.1 Bac0004952 Pseudomonas sp. GM67 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM67 1144335 AKJH00000000.1 Bac0004953 Pseudomonas sp. GM74 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM74 1144336 AKJG00000000.1 Bac0004954 Pseudomonas sp. GM84 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM84 1144340 AKJC00000000.1 Bac0004955 Allonocardiopsis opalescens str. DSM 45601 "Allonocardiopsis opalescens str. DSM 45601 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolic requirements. This organism thrives optimally at a temperature of 29.0 °C, indicating a preference for moderate thermal conditions. ↵↵The Gram-positive nature of A. opalescens suggests a thick peptidoglycan layer in its cell wall, which is typical for this classification and may play a role in its resilience and environmental adaptability. The spore-forming capability of this strain is particularly noteworthy, as it allows the bacterium to survive adverse conditions, facilitating its persistence in various habitats. ↵↵Given its aerobic nature, A. opalescens likely relies on oxygen for its metabolic processes, suggesting a potential ecological role in aerobic environments where organic matter decomposition occurs. This characteristic positions the bacterium within a niche that may contribute to nutrient cycling in its ecosystem. Understanding the physiological traits of A. opalescens may provide insights into its ecological interactions and potential applications in biotechnology or environmental microbiology." Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsaceae Allonocardiopsis Allonocardiopsis opalescens Gram-positive rod aerobic 29 mesophilic spore-forming 1144618 PVZC00000000.1 Bac0004956 Acinetobacter sp. CIP 101966 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 101966 1144662 APRX00000000.1 Bac0004957 Acinetobacter sp. CIP 102129 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 102129 1144664 APPA00000000.1 Bac0004958 Acinetobacter sp. CIP 53.82 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 53.82 1144671 APRK00000000.1 Bac0004959 Olleya namhaensis "Olleya namhaensis is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is characterized by its distinct cellular morphology, which is typical of many members within its phylogenetic group. The Gram-negative nature of O. namhaensis suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that influences its interaction with the environment and potentially its resistance to certain antibiotics.↵↵The optimal growth temperature indicates that O. namhaensis is well-adapted to moderate environmental conditions, which may reflect its natural habitat. Such temperature preferences could be indicative of its ecological niche, where it may play a role in nutrient cycling or interact with other microorganisms in its community. ↵↵Furthermore, its aerobic requirement implies that O. namhaensis is likely involved in processes that necessitate oxygen, possibly participating in the decomposition of organic matter or in other metabolic processes that contribute to the overall health of its ecosystem. Given its specific temperature and oxygen requirements, O. namhaensis may serve as a bioindicator for environmental conditions, suggesting its potential utility in monitoring ecosystem health or changes in microbial community structure in response to environmental shifts." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Olleya Olleya namhaensis Gram-negative rod motile aerobic 25 mesophilic 1144750 FORM00000000.1 Bac0004960 Paludibacterium purpuratum str. CECT 8976 "Paludibacterium purpuratum str. CECT 8976 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities. This organism thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic environments. The Gram-negative nature of P. purpuratum suggests that it possesses an outer membrane composed of lipopolysaccharides, which is typical for this group and may influence its interaction with other microorganisms and its surrounding environment.↵↵The ability to grow under both aerobic and anaerobic conditions allows P. purpuratum to exploit a diverse range of ecological niches, potentially contributing to its survival in fluctuating oxygen environments. This metabolic versatility may facilitate its role in biogeochemical cycles, particularly in anaerobic habitats where it could participate in the degradation of organic matter. ↵↵Overall, the adaptation strategies of P. purpuratum str. CECT 8976 offer insights into microbial life in environments where oxygen availability varies, highlighting the importance of such organisms in maintaining ecological balance and nutrient cycling." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Paludibacterium Paludibacterium purpuratum Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 1144873 SNZP00000000.1 Bac0004961 Streptomyces pharetrae CZA14 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces pharetrae 1144883 MRYD00000000.1 Bac0004962 Helicobacter pylori R046Wa "Helicobacter pylori R046Wa is a Gram-negative bacterium characterized by its spirilla shape and a tendency to exist as single cells. This microbe is classified as microaerophilic, indicating that it requires reduced levels of oxygen for optimal growth, which aligns with its habitat as a host-associated organism. The optimal temperature for H. pylori R046Wa is 37.0°C, reflecting its adaptation to the human gastric environment.↵↵Helicobacter pylori species, including strain R046Wa, are well-known for their association with the gastric mucosa, where they can persist in the acidic conditions of the stomach. The specific adaptations of R046Wa to this microaerophilic niche and its ability to thrive at 37.0°C suggest a specialized role in the microbial communities of the gastrointestinal tract. ↵↵While the specific ecological interactions and potential impacts of R046Wa on host health remain to be fully understood, its unique morphological and physiological traits provide insights into the complex dynamics of host-associated microbiomes and their potential influences on gastrointestinal health. Further research may elucidate the specific interactions between H. pylori R046Wa and its host, contributing to our understanding of microbial ecology in the stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1145116 AMOW00000000.1 Bac0004963 Helicobacter pylori R055a "Helicobacter pylori R055a is a Gram-negative bacterium characterized by its spirilla shape and a tendency to exist as single cells. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within its host-associated habitat. H. pylori R055a exhibits microaerophilic oxygen requirements, indicating that it prefers environments with reduced oxygen levels, often found in the gastric mucosa of its hosts.↵↵As a member of the Helicobacter genus, this strain's adaptation to its microenvironment suggests a specialized role in the gastric ecosystem, potentially influencing the local microbial community dynamics. The unique combination of its morphology, temperature preference, and oxygen requirements highlights its evolutionary adaptations to survive and proliferate in the hostile acidic environment of the stomach. ↵↵Understanding the traits of H. pylori R055a contributes to insights into its ecological niche, where it may play a role in shaping host-microbe interactions, particularly in relation to gastric health. Further research into this strain could elucidate its specific functions and interactions within the gastrointestinal microbiome, paving the way for a deeper comprehension of its ecological impact." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1145117 AMOX00000000.1 Bac0004964 Lysinibacillus varians str. GY32 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus varians 1145276 NZ_CP006837.1 Bac0004965 Bifidobacterium asteroides PRL2011 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium asteroides 1147128 NC_018720.1 Bac0004966 Pseudomonas mandelii JR-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mandelii 1147786 NZ_CP005961.1 Bac0004967 Acinetobacter oleivorans str. PF1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter oleivorans 1148157 JHQK00000000.1 Bac0004968 Pseudomonas prosekii str. A2-NA13 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas prosekii 1148509 PEGB00000000.1 Bac0004969 Pelosinus fermentans B4 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Pelosinus Pelosinus fermentans anaerobic 1149862 AKVJ00000000.1 Bac0004970 Brucella sp. 10RB9215 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella sp. 10RB9215 1149953 NZ_LT599047.1 Bac0004971 Myroides guanonis "Myroides guanonis is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C and requires oxygen for its growth, classifying it as an aerobic organism. This organism belongs to the family Flavobacteriaceae and has garnered attention due to its unique metabolic capabilities and environmental adaptability. ↵↵The Gram-negative nature of M. guanonis is characterized by its thin peptidoglycan layer and an outer membrane, which is typical of many bacteria in its classification. The rod shape of this microbe can influence its motility and ecological interactions, potentially allowing for efficient colonization of varied environments. ↵↵M. guanonis has been isolated from specific ecological niches, such as guano deposits, which suggests a role in nutrient cycling and biodegradation within these habitats. The ability to thrive in such conditions indicates that this bacterium may contribute to the decomposition process and nutrient liberation from organic matter, thereby playing a significant role in the ecosystem dynamics of its native environment. ↵↵Given its specific growth requirements and ecological associations, M. guanonis exemplifies the diverse strategies that bacteria employ to adapt to and thrive in specialized habitats, highlighting the intricate relationships between microbial life and environmental substrates." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides guanonis Gram-negative rod non-motile aerobic 29 mesophilic 1150112 FORU00000000.1 Bac0004972 Fusicatenibacter saccharivorans "Fusicatenibacter saccharivorans is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments and is characterized by its non-spore-forming nature. This microbe is notable for its ability to ferment carbohydrates, which suggests it plays a role in the degradation of plant materials and organic matter in its native habitat. ↵↵The anaerobic requirement indicates that F. saccharivorans may be found in environments with limited oxygen availability, such as in the gastrointestinal tracts of certain animals or in anoxic sediment layers. Its rod-shaped morphology is typical of many members of the Firmicutes phylum, which are often involved in various biochemical processes, including fermentation and organic matter decomposition.↵↵Given its carbohydrate-fermenting capabilities, F. saccharivorans may contribute to the carbon cycling in its ecological niche, potentially influencing nutrient availability and the overall microbial community structure. This capability underscores the importance of anaerobic bacteria in maintaining ecosystem balance, particularly in environments where oxygen is scarce. Understanding the metabolic pathways utilized by F. saccharivorans could provide insights into its roles in biogeochemical cycles and its interactions with other microorganisms within its habitat." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Fusicatenibacter Fusicatenibacter saccharivorans Gram-positive rod non-motile anaerobic non-spore-forming 1150298 CYYV00000000.1 Bac0004973 Brevundimonas sp. 374 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. 374 1150400 FNKT00000000.1 Bac0004974 Micromonospora lupini str. Lupac 08 "Micromonospora lupini str. Lupac 08 is a Gram-positive, aerobic bacterium known for its ability to form spores. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions that may be encountered in specific ecological niches. The sporulation capability of M. lupini str. Lupac 08 indicates its resilience and ability to survive under unfavorable conditions, likely enhancing its adaptability in diverse environments.↵↵As a member of the genus Micromonospora, this strain may exhibit characteristics typical of actinobacteria, including complex metabolic pathways and the potential for producing secondary metabolites. However, specific biochemical pathways and metabolic capabilities of M. lupini str. Lupac 08 remain to be elucidated.↵↵The ecological role of Micromonospora species, including str. Lupac 08, often involves soil and plant interactions, which could contribute to nutrient cycling and soil health. The ability to form spores may not only facilitate survival but also enable the bacterium to establish itself in various habitats, potentially influencing microbial community dynamics. Further studies could reveal the ecological significance of M. lupini str. Lupac 08 within its native environment, particularly in relation to its interactions with plant hosts and other soil microorganisms." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora lupini Gram-positive aerobic 29 mesophilic spore-forming 1150864 CAIE00000000.1 Bac0004975 Clostridioides difficile F501 "Clostridioides difficile F501 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, chains, or as single cells. This microbe is classified as an anaerobe, thriving in oxygen-free environments, which aligns with its habitat being primarily host-associated. C. difficile F501 is a chemoorganotroph, indicating that it derives its energy from organic compounds.↵↵Optimal growth conditions for C. difficile F501 are observed at 37.0°C, which corresponds to the average body temperature of mammals, further supporting its adaptation to a host-associated lifestyle. This temperature preference underscores the organism's potential role in the gut microbiome, where it may interact with the host's metabolic processes.↵↵The ability of C. difficile F501 to form chains and pairs may facilitate its survival in competitive environments such as the gastrointestinal tract, where it can potentially form biofilms or establish a resilient presence among the complex microbial community. Understanding the characteristics of C. difficile F501 can provide insights into its ecological role within the gut and its interactions with other microorganisms. Further research could elucidate how its anaerobic metabolism contributes to its fitness in the host environment, particularly in the context of microbial diversity and stability." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles 1151372 AVKQ00000000.1 Bac0004976 Clostridioides difficile Y384 "Clostridioides difficile Y384 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains, pairs, or as single cells. This microbe is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen, which aligns with its habitat as a host-associated organism. Clostridioides difficile Y384 is a chemoorganotroph, utilizing organic compounds as its energy source, which is common among many gut-associated microorganisms. The optimal growth temperature for this strain is 37.0°C, reflecting the physiological conditions of the mammalian host environment.↵↵The ability of Clostridioides difficile Y384 to form chains and pairs may provide advantages in colonization and persistence within the host, potentially influencing its interactions with the gut microbiome. Understanding the growth characteristics and metabolic capabilities of this strain enhances our knowledge of its ecological role in the host's gastrointestinal tract, where it may participate in complex microbial communities. Further research into its specific interactions and contributions to gut health or dysbiosis may yield insights into its biological significance in the context of host-associated ecosystems." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles 1151391 AVLJ00000000.1 Bac0004977 Clostridioides difficile P28 "Clostridioides difficile P28 is a Gram-positive, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This microbe is an anaerobic chemoorganotroph, deriving its energy from organic compounds in the absence of oxygen, which aligns with its adaptation to host-associated habitats. The optimal growth temperature for C. difficile P28 is approximately 37.0°C, a condition that corresponds with the physiological temperature of its mammalian hosts.↵↵C. difficile is particularly notable for its role in the gastrointestinal tract, where it can influence the microbial balance. Its anaerobic nature suggests that it thrives in environments devoid of oxygen, which is characteristic of the intestinal lumen. This specialized habitat may allow C. difficile P28 to engage in metabolic processes that contribute to its survival and potential interactions with other microbial communities within the host.↵↵Understanding the specific traits of C. difficile P28 can provide insights into its ecological role in host-associated environments, particularly in terms of nutrient cycling and its potential impact on gut microbiota composition. The ability to grow in chains and pairs may facilitate its colonization and persistence in the gut, suggesting a potential for cooperative interactions with other microorganisms in the complex intestinal ecosystem." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles 1151410 AVMC00000000.1 Bac0004978 Streptococcus agalactiae FSL S3-277 "Streptococcus agalactiae FSL S3-277 is a Gram-positive bacterium characterized by its cocci shape and typical arrangement in chains or pairs. This organism thrives optimally at 37.0°C, reflecting its adaptation to a host-associated habitat, where it can engage in various metabolic processes. As a facultative anaerobe, S. agalactiae FSL S3-277 is capable of surviving in both aerobic and anaerobic environments, which may enhance its versatility in different host niches.↵↵The ability of this strain to live in host-associated habitats suggests a potential for interaction with the host's immune system and microbiota. This interaction may play a significant role in its ecological niche, influencing both microbial community dynamics and host physiology. The adaptability of S. agalactiae FSL S3-277 to fluctuating oxygen levels may further facilitate its persistence in diverse environments within the host, providing insights into the complex relationships between bacteria and their hosts in terms of health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1154781 ALQC00000000.1 Bac0004979 Streptococcus agalactiae LMG 14747 "Streptococcus agalactiae LMG 14747 is a Gram-positive coccus that typically arranges itself in chains or pairs. This facultative anaerobe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in warm-blooded hosts. Its habitat is primarily host-associated, indicating a potential reliance on host environments for growth and survival.↵↵The cellular arrangement and Gram-positive nature of S. agalactiae are characteristic features of the genus Streptococcus, which is known for its diverse roles in both commensal and pathogenic contexts within various hosts. The facultative anaerobic metabolism allows this microbe to adapt to varying oxygen levels, a trait that enhances its survival in different biological niches, particularly in anaerobic conditions found in certain host tissues.↵↵Given its host-associated habitat, S. agalactiae may play a role in specific microbial communities, possibly contributing to the maintenance of microbial balance within the host. This suggests a complex interplay between the microbe and its environment, where it may engage in interactions that influence host health and microbial dynamics. Understanding these ecological roles can provide insights into the broader implications of S. agalactiae within host-associated microbiomes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1154860 ANQC00000000.1 Bac0004980 Borrelia crocidurae str. Achema Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia crocidurae 1155096 NC_017801.1 Bac0004981 Bacillus velezensis YAU B9601-Y2 "Bacillus velezensis YAU B9601-Y2 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, indicating its capacity to survive in challenging environmental conditions. This microbe is aerobic, thriving in environments where oxygen is readily available, and it is primarily found in terrestrial habitats. The ability to form spores allows B. velezensis YAU B9601-Y2 to endure periods of nutrient limitation and other stressors, contributing to its resilience in soil ecosystems.↵↵The aerobic nature of this strain suggests a potential role in the soil microbiome, where it may participate in various biochemical processes, including nutrient cycling and organic matter decomposition. Additionally, the sporulation trait may facilitate the bacterium's survival during unfavorable conditions, enabling it to maintain its presence in diverse terrestrial niches.↵↵Bacillus velezensis species are often recognized for their plant growth-promoting properties, and while specific interactions of YAU B9601-Y2 with plants have not been detailed here, its traits suggest that it may contribute positively to soil health and plant development. Understanding the ecological role of B. velezensis YAU B9601-Y2 could provide insights into its potential applications in agriculture, particularly in sustainable practices where beneficial microbes are harnessed to enhance soil fertility and plant resilience." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1155777 NC_017912.1 Bac0004982 Paenibacillus taihuensis str. CGMCC 1.10966 "Paenibacillus taihuensis str. CGMCC 1.10966 is a Gram-negative, rod-shaped bacterium characterized by its ability to form spores and its facultative aerobic/anaerobic metabolism. This species thrives optimally at a temperature of 32.0°C, which suggests a preference for moderate thermal environments. ↵↵As a spore-forming microbe, P. taihuensis has the capability to produce spores that enhance its resilience to adverse conditions, allowing it to survive in a variety of habitats. The facultative nature of its oxygen requirement indicates that it can adapt to both oxygen-rich and oxygen-poor environments, potentially enabling it to colonize diverse ecological niches.↵↵The combination of these traits positions P. taihuensis as a versatile organism, likely contributing to its ecological success in fluctuating environments where nutrient availability and oxygen levels may vary. Its ability to form spores may also play a significant role in its survival and persistence in soil and other substrates, where it may interact with other microbial communities. Understanding the ecological implications of its metabolic flexibility and sporulation capabilities can provide insights into its role in nutrient cycling and interactions within its ecosystem." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus taihuensis Gram-negative rod facultative aerobe/anaerobe 32 mesophilic spore-forming 1156355 QTTN00000000.1 Bac0004983 Streptococcus ilei "Streptococcus ilei is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic respiration. This microbe is characterized by its spherical morphology, which is typical of the Streptococcus genus. As a facultative anaerobe, S. ilei can thrive in both aerobic and anaerobic environments, allowing it to adapt to a variety of ecological niches where oxygen levels may fluctuate.↵↵The ability to grow in diverse conditions suggests that S. ilei may play a role in various microbial communities, potentially contributing to the fermentation processes in its environment. Its Gram-positive nature indicates the presence of a thick peptidoglycan layer in its cell wall, which could influence its interactions with other microorganisms and its resistance to certain environmental stresses.↵↵The ecological significance of S. ilei may extend to its involvement in the microbial dynamics of its habitat, where it could interact with other bacteria and contribute to nutrient cycling. Further research into its metabolic capabilities and interactions within ecosystems could provide insights into its role in maintaining microbial balance and influencing the overall health of its ecological niche." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus ilei Positive Cocci Facultative anaerobe 1156431 NC_022582.1 Bac0004984 Enterococcus faecium EnGen0153 str. HM1074 "Enterococcus faecium EnGen0153 str. HM1074 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. As a member of the Enterococcus genus, this strain is known for its ability to thrive in various environments, utilizing both aerobic and anaerobic respiration. ↵↵Enterococcus faecium is commonly found in the gastrointestinal tracts of humans and animals, suggesting its role in normal microbiota. The facultative anaerobic nature of HM1074 indicates that it can adapt to varying oxygen levels, which is a significant trait for survival in diverse ecological niches, including those with fluctuating oxygen availability.↵↵This strain's Gram-positive status suggests a thick peptidoglycan layer in its cell wall, which may confer certain advantages in terms of resistance to environmental stresses, such as desiccation and antimicrobial agents. Understanding the traits of Enterococcus faecium EnGen0153 str. HM1074 may provide insights into the adaptive strategies of this organism in heterogeneous environments, as well as its potential roles in microbial interactions within the gut microbiome." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1157448 AIUA00000000.1 Bac0004985 Enterococcus faecium EnGen0191 str. HM1073 "Enterococcus faecium EnGen0191 str. HM1073 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic respiration. As a member of the Enterococcus genus, this strain is characterized by its ability to thrive in both aerobic and anaerobic environments, allowing it to occupy diverse ecological niches. The Gram-positive nature of E. faecium indicates a thick peptidoglycan layer in its cell wall, which can contribute to its resilience under various stress conditions.↵↵Facultative anaerobes such as E. faecium are capable of metabolizing glucose in the presence of oxygen through aerobic respiration, while also utilizing fermentation pathways when oxygen is scarce. This metabolic flexibility enables E. faecium HM1073 to survive in fluctuating environments, such as those found in the gastrointestinal tracts of mammals, where oxygen levels can vary significantly. Additionally, the cocci shape of this bacterium may influence its interactions with other microbial species and its overall resilience in hostile environments.↵↵Understanding the traits of Enterococcus faecium EnGen0191 str. HM1073 provides insight into its potential role in microbial communities, particularly in relation to nutrient cycling and the maintenance of microbial diversity. Its ability to adapt to varying oxygen levels and survive in diverse habitats suggests that this strain may play a significant role in the dynamics of its ecological niche, potentially influencing the overall health of its environment and the organisms it interacts with." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1157486 AITZ00000000.1 Bac0004986 Tumebacillus flagellatus str. GST4 "Tumebacillus flagellatus strain GST4 is a Gram-positive, rod-shaped bacterium known for its capacity to form spores. This strain exhibits optimal growth at 37.0°C, indicating a preference for mesophilic temperatures commonly found in warm-blooded hosts or environments. T. flagellatus str. GST4 is strictly aerobic, requiring oxygen for growth, which suggests its potential involvement in aerobic metabolic processes.↵↵The ability to form spores enables T. flagellatus str. GST4 to withstand adverse environmental conditions, providing a survival advantage in fluctuating habitats. The rod morphology is characteristic of several genera within the Bacillus and Clostridium families, suggesting that T. flagellatus may share some ecological niches with other spore-forming bacteria. ↵↵Given its aerobic nature and spore-forming capability, T. flagellatus str. GST4 may play a role in nutrient cycling within its environment, particularly in aerobic decomposition processes. This trait could facilitate the breakdown of organic matter, contributing to soil health and microbial diversity. Further studies are warranted to elucidate its specific ecological roles and potential applications in biotechnology or environmental management." Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Tumebacillus Tumebacillus flagellatus Gram-positive rod aerobic 37 mesophilic spore-forming 1157490 JMIR00000000.1 Bac0004987 Streptococcus salivarius PS4 "Streptococcus salivarius PS4 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. This bacterium is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. salivarius PS4 is primarily found in the oral cavity, where it plays a role in the complex microbial ecosystem of the human microbiome.↵↵The presence of S. salivarius PS4 in the oral cavity suggests its potential involvement in maintaining oral health and balance within the microbial community. Its ability to grow in varying oxygen conditions may confer an adaptive advantage in the dynamic environment of the mouth, where oxygen levels can fluctuate due to various factors such as diet and oral hygiene practices. Further research into this strain could provide insights into its role in oral microbiota composition and function, as well as its potential interactions with other microorganisms present in the oral cavity. Understanding these dynamics may also shed light on the implications of S. salivarius PS4 in health and disease states related to the oral environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1157946 AJFW00000000.1 Bac0004988 Providencia stuartii MRSN 2154 "Providencia stuartii MRSN 2154 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds. The optimal growth temperature for P. stuartii MRSN 2154 is 37.0 °C, which is consistent with the temperature range typically found in mammalian hosts and environments.↵↵P. stuartii is known to inhabit multiple ecological niches, indicating its adaptability and potential versatility in various habitats. This trait suggests that the bacterium may play different roles in diverse environments, from soil and water to the gastrointestinal tracts of animals. The ability to function under varying oxygen levels further enhances its ecological adaptability, potentially allowing it to exploit a wide array of substrates available in its surroundings.↵↵The adaptability of P. stuartii MRSN 2154 to multiple habitats and its facultative anaerobic nature may provide insights into its interactions with other microbial communities, including its potential role in nutrient cycling. Understanding the ecological dynamics of this bacterium could reveal important information regarding its contributions to microbial diversity and function in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia stuartii Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1157951 NC_017731.1 Bac0004989 Enterococcus faecium EnGen0263 str. UAA1280 "Enterococcus faecium EnGen0263 str. UAA1280 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This strain belongs to the genus Enterococcus, which is notable for its resilience and ability to thrive in various environments, including those with fluctuating oxygen levels. The facultative anaerobic nature of E. faecium UAA1280 allows it to adapt to both aerobic and anaerobic conditions, enabling it to occupy a wide range of ecological niches, including the gastrointestinal tracts of humans and other mammals.↵↵The Gram-positive staining characteristic indicates a robust cell wall structure, which is typical of enterococci and contributes to their survival under challenging conditions, such as exposure to antibiotics and varying pH levels. This resilience is a hallmark of the Enterococcus genus, which has been observed to persist in both clinical and environmental settings.↵↵The unique combination of traits exhibited by Enterococcus faecium UAA1280 suggests that it may play a significant role in microbial communities, particularly in its ability to outcompete other microorganisms in diverse environments. This adaptability not only enhances its survival but also raises the potential for it to contribute to biogeochemical cycles, especially in nutrient-rich environments where competition for resources is intense. Further exploration of its ecological roles could provide insights into its interactions within microbial communities and its contributions to ecosystem dynamics." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1158553 AJAD00000000.1 Bac0004990 Enterococcus malodoratus ATCC 43197 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus malodoratus microaerophile 1158601 AJAK00000000.1 Bac0004991 Enterococcus casseliflavus ATCC 49996 "Enterococcus casseliflavus ATCC 49996 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This species belongs to the genus Enterococcus, which is known for its resilience in various environments and its ability to thrive in both aerobic and anaerobic conditions. The cocci morphology of E. casseliflavus allows for its survival in diverse niches, enhancing its adaptability to fluctuating oxygen levels.↵↵As a facultative anaerobe, E. casseliflavus can utilize oxygen when available but can also switch to fermentation pathways in its absence, which contributes to its versatility in different habitats, including the gastrointestinal tracts of humans and animals. The ability to grow under varying oxygen conditions is a significant trait that enables this microbe to occupy ecological niches that may be inhospitable to strict aerobes or anaerobes.↵↵Moreover, Enterococcus species, including E. casseliflavus, are known to possess intrinsic resistance to many antibiotics, a trait that underscores their importance in clinical and environmental microbiology. While specific pathogenicity details for E. casseliflavus ATCC 49996 are not provided, the ecological role of this organism may involve interactions with other gut microbiota, contributing to the overall balance of microbial communities. This highlights the potential of E. casseliflavus as a model organism for studying microbial ecology and the dynamics of gut health." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe 1158603 AJAM00000000.1 Bac0004992 Enterococcus asini ATCC 700915 "Enterococcus asini ATCC 700915 is a Gram-positive, cocci-shaped bacterium that thrives at mesophilic temperatures, functioning as a chemoheterotroph. This organism is predominantly found in various body sites of mammals, particularly within the gastrointestinal tracts of healthy animals, including humans. It is classified as a facultative anaerobe, allowing it to grow in both oxygen-rich and oxygen-poor environments, making it versatile in its ecological niches. The Gram-positive characteristic of Enterococcus asini is indicative of its thick peptidoglycan layer, which provides structural support and resistance to environmental stresses. As a cocci-shaped bacterium, it typically appears as spherical cells that can form pairs (diplococci) or short chains, a morphology that affects its interaction with host tissues and immune responses. Being mesophilic, E. asini optimally grows at moderate temperatures, generally between 30°C to 37°C, which aligns with the physiological conditions found in the intestines of warm-blooded animals. As a chemoheterotroph, Enterococcus asini relies on organic compounds as its primary energy source, which it derives from its environment or host. This metabolic versatility enhances its survival and proliferation within the complex microbiota of the gut. Its classification as a facultative anaerobe endows it with the unique ability to switch between aerobic respiration in the presence of oxygen and fermentation in anaerobic conditions, facilitating its colonization in diverse environments. E. asini has gained attention in recent studies for its potential role in gut health, particularly its influence on the balance of microbial communities and its contribution to the fermentation of dietary fibers. Additionally, it has been recognized for its ability to confer resistance to certain antibiotics, a trait that could have implications in both clinical settings and livestock management." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus asini Positive Cocci Facultative anaerobe 1158606 AJAP00000000.1 Bac0004993 Enterococcus pallens ATCC BAA-351 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus pallens 1158607 AJAQ00000000.1 Bac0004994 Enterococcus haemoperoxidus ATCC BAA-382 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus haemoperoxidus aerobic 1158608 AJAR00000000.1 Bac0004995 Paenimyroides marinum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Paenimyroides Paenimyroides marinum 1159016 FNXE00000000.1 Bac0004996 Helicobacter pylori GAM117Ai "Helicobacter pylori GAM117Ai is a Gram-negative bacterium characterized by its spirilla shape and arrangement as single cells. This microbe thrives in a microaerophilic environment, which suggests a specific adaptation to conditions with lower levels of oxygen, a trait that is essential for its survival in its natural habitat. Optimal growth occurs at 37.0°C, indicating a preference for the warm conditions typically found within host organisms. ↵↵H. pylori GAM117Ai is primarily host-associated, residing in the gastric environment of various mammals, including humans. This association highlights its specialized ecological niche, which may influence its physiological and metabolic adaptations. The microbe's spiral morphology is believed to facilitate motility through the viscous gastric mucus, potentially enhancing its ability to colonize and persist in the stomach's acidic environment.↵↵Understanding the unique traits of H. pylori GAM117Ai contributes to the broader knowledge of microbial survival strategies in host-associated habitats. The microbe's adaptation to microaerophilic conditions and its capacity for survival at body temperature underscore its evolutionary success in colonizing the gastric mucosa, which is a critical factor in its interactions with host organisms. Further exploration of this strain may illuminate its role in host-microbe dynamics and the implications for gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1159026 AWER00000000.1 Bac0004997 Mycoplasmoides gallisepticum WI01_2001.043-13-2P Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides gallisepticum 1159201 NC_018410.1 Bac0004998 Leptospirillum sp. Group II C75 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum sp. Group II 'C75' 1159328 AIJM00000000.1 Bac0004999 Cronobacter dublinensis subsp. dublinensis LMG 23823 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter dublinensis 1159554 NZ_CP012266.1 Bac0005000 Alloscardovia macacae "Alloscardovia macacae is a Gram-positive, ovoid-shaped bacterium that has been identified in various biological contexts. This organism is notable for its distinct morphology, characterized by its ovoid shape, which may influence its interaction with host environments and microbial communities. The Gram-positive nature of A. macacae suggests the presence of a thick peptidoglycan layer in its cell wall, a feature that is often associated with certain physiological traits, such as resilience to environmental stressors and specific immune responses.↵↵While specific ecological roles and pathogenicity have not been detailed in the current data, the characteristics of A. macacae allow for speculation about its potential involvement in symbiotic relationships or its role within the microbiota of its host. Given its classification within the broader microbial community, A. macacae may contribute to the maintenance of microbial diversity and stability in its ecosystem.↵↵Further research into the metabolic capabilities and ecological interactions of Alloscardovia macacae could provide insights into its functional role in its native environment, particularly in relation to host organisms and the overall microbiome. This understanding may also shed light on the evolutionary adaptations that allow A. macacae to thrive in specific niches, contributing to the complex dynamics of microbial life." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Alloscardovia Alloscardovia macacae Gram-positive ovoid 1160091 MWWT00000000.1 Bac0005001 Vagococcus entomophilus Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus entomophilus 1160095 NGJZ00000000.1 Bac0005002 Microcystis sp. T1-4 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis sp. T1-4 1160279 CAIP00000000.1 Bac0005003 Microcystis aeruginosa PCC 9443 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1160281 CAIJ00000000.1 Bac0005004 Microcystis aeruginosa PCC 9806 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1160282 CAIL00000000.1 Bac0005005 Microcystis aeruginosa PCC 9808 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1160284 CAIN00000000.1 Bac0005006 Microcystis aeruginosa PCC 9809 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1160285 CAIO00000000.1 Bac0005007 Streptomyces viridochromogenes Tue57 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces viridochromogenes 1160705 AMLP00000000.1 Bac0005008 Salmonella bongori serovar 48:z35:- str. N19-0781 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella bongori 1160722 VCNN00000000.1 Bac0005009 Salmonella enterica subsp. enterica serovar Worthington "Salmonella enterica subsp. enterica serovar Worthington is a Gram-negative bacterium characterized by its spirilla shape and its tendency to form chains or exist as singles. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of its hosts, suggesting a close association with warm-blooded animals. As a chemoorganotroph, S. enterica serovar Worthington derives its energy from organic compounds, reflecting its adaptation to a nutrient-rich environment often found within host organisms.↵↵The microaerophilic nature of this serovar indicates that it requires reduced levels of oxygen for growth, which may influence its habitat preferences and metabolic pathways. The host-associated lifestyle suggests that S. enterica serovar Worthington may play a role in complex interactions within the microbiota of its hosts, potentially impacting host health and disease dynamics.↵↵Understanding the specific environmental and physiological conditions that support the growth of S. enterica serovar Worthington could provide insights into its ecological niche and its potential role in the microbiomes of various hosts. This serovar's adaptation to microaerophilic conditions and its chemoorganotrophic metabolism may facilitate its survival and proliferation in the gastrointestinal tracts of animals, where oxygen levels are often limited." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1160769 NZ_CP039514.1 Bac0005010 Bifidobacterium sp. MSTE12 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. MSTE12 1161409 AZYA00000000.1 Bac0005011 Streptococcus sp. BS29a Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. BS29a 1161415 AZYV00000000.1 Bac0005012 Thermosipho africanus H17ap60334 Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho africanus anaerobic 1161912 AJIP00000000.1 Bac0005013 Brachyspira pilosicoli WesB "Brachyspira pilosicoli WesB is a Gram-negative, anaerobic bacterium known for its unique physiological characteristics. As a member of the genus Brachyspira, this organism exhibits a helical or spiral morphology, which is typical of its closely related species. The anaerobic nature of B. pilosicoli WesB indicates that it thrives in environments devoid of oxygen, relying on fermentation or other anaerobic metabolic pathways for energy production.↵↵This microbe's Gram-negative cell wall structure features a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this classification and contributes to its resilience in anaerobic conditions. The ability to grow in oxygen-limited environments suggests that B. pilosicoli WesB may play a role in anaerobic biogeochemical processes, particularly in the gut microbiota of host organisms where oxygen levels are significantly lower.↵↵The specific ecological niches occupied by Brachyspira pilosicoli WesB are yet to be fully elucidated; however, its adaptation to anaerobic conditions suggests potential implications in various anaerobic ecosystems. These may include the digestive tracts of animals, where it might interact with other microbial communities. Further research could enhance our understanding of its ecological role and contributions to anaerobic microbial diversity. This highlights the importance of studying B. pilosicoli WesB in the context of both microbiological research and broader ecological frameworks." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli Negative Anaerobe 1161918 NC_018604.1 Bac0005014 Erwinia piriflorinigrans CFBP 5888 str. CFBP5888 "Erwinia piriflorinigrans CFBP 5888 str. CFBP5888 is a Gram-negative, rod-shaped bacterium that does not form spores and thrives optimally at a temperature of 25.0°C. As a facultative aerobe/anaerobe, this microbe is capable of growth in both the presence and absence of oxygen, which suggests a versatile metabolic capacity that may allow it to inhabit a variety of environments.↵↵The rod morphology of E. piriflorinigrans is characteristic of its genus, which is noted for its diverse metabolic pathways and ecological interactions. The organism's inability to form spores indicates a reliance on environmental conditions for survival and growth, highlighting its potential susceptibility to changes in habitat or resource availability.↵↵Given its optimal growth temperature, E. piriflorinigrans is likely well adapted to temperate environments, where it may play a role in the degradation of organic matter or interact with plant systems. This adaptability in varied oxygen conditions suggests a potential for ecological versatility, which could be significant in the context of nutrient cycling within its ecosystem. Further studies could illuminate its specific ecological interactions and contributions to microbial communities in natural or agricultural settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia piriflorinigrans Gram-negative rod facultative aerobe/anaerobe 25 mesophilic non-spore-forming 1161919 CAHS00000000.1 Bac0005015 Rhodanobacter sp. FW021-MT20 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. FW021-MT20 1162282 AJXS00000000.1 Bac0005016 Leptospirillum ferrooxidans C2-3 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferrooxidans 1162668 NC_017094.1 Bac0005017 Streptococcus anginosus T5 "Streptococcus anginosus T5 is a Gram-positive, nonsporulating coccus that thrives as a facultative anaerobe, with an optimal growth temperature of 37.0°C. This microbe is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy, which it derives from its habitat within the host gut. ↵↵As part of the Streptococcus genus, S. anginosus T5 exhibits a characteristic coccoid morphology, which is typical of this group of bacteria. Its facultative anaerobic nature allows it to adapt to varying oxygen levels in the gut environment, facilitating its survival and metabolic activity in both aerobic and anaerobic conditions.↵↵The presence of S. anginosus T5 in the host gut underscores its potential role in gut microbiota dynamics, where it may contribute to the complex interactions among microbial communities. This species is often associated with human-associated microbiomes, suggesting a potential involvement in maintaining gut health or influencing host metabolic processes. Further studies may elucidate its functional significance within the gut environment, particularly in relation to nutrient metabolism and interactions with both the host and other microbial inhabitants." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 1163302 BASY00000000.1 Bac0005018 Francisella orientalis str. Toba 04 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella orientalis 1163389 NC_017909.1 Bac0005019 Sulfuricella denitrificans skB26 "**Sulfuricella denitrificans skB26** is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 16.0°C. This organism exhibits unique metabolic capabilities, enabling it to participate in biogeochemical cycles involving sulfur and nitrogen. ↵↵The rod shape of S. denitrificans skB26 suggests a structural adaptation that may facilitate its movement and colonization in specific environments, potentially including cold marine habitats where such temperatures are prevalent. The Gram-negative nature of this microbe indicates that it possesses a characteristic outer membrane, which may influence its interactions with other microorganisms and its resilience to various environmental stresses. ↵↵Furthermore, the ecological role of S. denitrificans skB26 may extend to its involvement in denitrification processes, contributing to the nitrogen cycle by converting nitrates into nitrogen gas under anaerobic conditions. This function is crucial in reducing excess nitrogen in aquatic and terrestrial ecosystems, thereby mitigating issues related to eutrophication and maintaining ecosystem balance.↵↵The specific adaptation of S. denitrificans skB26 to cooler temperatures highlights its potential significance in cold biomes, where it may play a vital role in nutrient cycling and the overall health of these ecosystems. Understanding its metabolic pathways could provide insights into the ecological dynamics and microbial interactions in extreme environments." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sulfuricellaceae Sulfuricella Sulfuricella denitrificans Gram-negative rod 16 psychrotolerant 1163617 NC_022357.1 Bac0005020 Fervidicoccus fontis Kam940 str. Kam940T Thermoproteati Thermoproteota Thermoprotei Fervidicoccales Fervidicoccaceae Fervidicoccus Fervidicoccus fontis 1163730 NC_017461.1 Bac0005021 Helicobacter pylori Shi169 "Helicobacter pylori Shi169 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism optimally thrives at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe. H. pylori strains are typically found in the gastric mucosa of their hosts, where they may play a role in various physiological and pathological processes.↵↵The microaerophilic nature of H. pylori Shi169 suggests that it requires lower levels of oxygen for growth compared to atmospheric conditions, indicating a specialized adaptation to its environment within the host's stomach. The ability to maintain viability and function in such unique oxygen levels may influence its interactions with host immune responses and gastric microenvironments. ↵↵Understanding the specific traits of H. pylori Shi169 sheds light on its ecological niche within the gastric ecosystem and highlights the importance of microaerophilic conditions for its survival and potential metabolic activities. Further investigation into the physiological roles of this strain could provide insights into its contributions to host gastric health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1163741 NC_017740.1 Bac0005022 Helicobacter pylori PeCan18 "Helicobacter pylori PeCan18 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions of its host-associated habitat. ↵↵As a member of the Helicobacter genus, H. pylori PeCan18 is commonly found in the gastric mucosa of humans and other mammals, where it can adapt to the acidic environment of the stomach. The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for growth, which is indicative of its specialized niche within host organisms. ↵↵Research on Helicobacter species has often highlighted their unique adaptations to the gastrointestinal tract, including mechanisms that enable them to survive in hostile conditions. Understanding the traits of H. pylori PeCan18 could provide valuable insights into its ecological roles and interactions within the host environment. The ability of this strain to thrive under microaerophilic conditions suggests it may play a significant role in influencing local microbiota dynamics and host health, potentially impacting gastric physiology and the broader microbial ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1163742 NC_017742.1 Bac0005023 Helicobacter pylori HUP-B14 "Helicobacter pylori HUP-B14 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives at an optimal temperature of 37.0°C, which aligns with the physiological conditions of its natural habitat, the host stomach. As a member of the Helicobacter genus, HUP-B14 is associated with the gastric environment, where it may play a role in the complex interactions between the host's immune system and the gastric microbiota.↵↵The microaerophilic nature of HUP-B14 indicates its requirement for reduced levels of oxygen, which is typical for bacteria inhabiting the acidic and oxygen-limited environment of the stomach. This adaptation not only influences its survival but may also affect its metabolic processes and interactions with the host. The single-cell arrangement suggests a lifestyle that could facilitate motility and colonization within the gastric mucosa.↵↵Understanding the traits of Helicobacter pylori HUP-B14 can provide insights into its ecological niche within the human gastrointestinal tract. The unique combination of its Gram-negative nature, spiral morphology, and microaerophilic requirements suggests a highly specialized organism that may contribute to the intricate balance of microbial communities in the stomach, potentially influencing digestive health and disease states in the host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1163743 NC_017734.1 Bac0005024 Helicobacter cetorum MIT 99-5656 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cetorum 1163745 NC_017736.1 Bac0005025 Marinobacter nauticus ATCC 49840 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter nauticus 1163748 NC_017067.1 Bac0005026 Rhodococcus opacus RKJ300 = JCM 13270 "Rhodococcus opacus RKJ300 (also known as JCM 13270) is a Gram-positive, aerobic bacterium characterized by its coccoid shape and filamentous cell arrangement. This bacterium is notable for its ability to utilize various carbon sources, which may enable it to thrive in diverse environments. The filamentous arrangement of its cells suggests a potential for complex interactions within microbial communities, possibly enhancing its adaptability and survival in varied ecological niches.↵↵As an aerobic organism, R. opacus RKJ300 relies on oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability fluctuates. This trait could position it as a significant player in aerobic biogeochemical cycles, particularly in the degradation of organic compounds. ↵↵The presence of filamentous growth may also indicate a potential for biofilm formation, which could have implications for its ecological roles, especially in soil and aquatic systems. Observations of such growth patterns can provide insights into the organism's interactions with other microorganisms and its contributions to nutrient cycling. Understanding the ecological niche of R. opacus RKJ300 can inform its potential applications in bioremediation and environmental management, particularly in the breakdown of pollutants due to its metabolic versatility." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 1165867 AJJH00000000.1 Bac0005027 Escherichia coli O111:H8 str. CVM9634 "Escherichia coli O111:H8 str. CVM9634 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its capability to thrive in both aerobic and anaerobic environments. E. coli O111:H8 str. CVM9634 is optimally active at a temperature of 37.0°C, which is consistent with the physiological temperature of the warm-blooded hosts it is associated with. Its habitat is primarily host-associated, suggesting a close relationship with its biological hosts, where it may play various roles in the microbiota or influence host health dynamics.↵↵In the context of microbial ecology, E. coli strains such as O111:H8 may contribute to the nutrient cycling within their host, potentially impacting the host’s immune response and overall gut health. Additionally, the ability to exist in pairs or as single cells may afford this strain a competitive edge in adapting to changing environmental conditions within the host. Understanding such traits is crucial for elucidating the ecological roles of E. coli strains in both health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1165944 AKAW00000000.1 Bac0005028 Fibrella aestuarina BUZ 2 "Fibrella aestuarina BUZ 2 is a Gram-negative, rod-shaped bacterium characterized by its optimal growth temperature of 29.0°C. This organism, belonging to the diverse group of bacteria typically found in estuarine environments, exhibits the morphological characteristics commonly associated with its genus. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in fluctuating salinity and temperature conditions often found in estuaries. ↵↵The optimal temperature of 29.0°C suggests that Fibrella aestuarina BUZ 2 is well-suited for growth in warm environments, potentially reflecting its ecological niche within coastal ecosystems where temperatures can vary significantly. Such a thermal preference may influence its metabolic activities and interactions with surrounding microbial communities.↵↵Fibrella aestuarina BUZ 2's rod shape could also play a role in its motility and nutrient acquisition strategies, which are crucial for survival in nutrient-variable habitats. The organism's adaptation to estuarine conditions underscores its potential role in biogeochemical cycles, particularly in organic matter decomposition and nutrient recycling. ↵↵Understanding the physiological traits of Fibrella aestuarina BUZ 2 can provide insights into its ecological functions, particularly in the context of microbial community dynamics and environmental resilience in estuarine ecosystems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Fibrella Fibrella aestuarina Gram-negative rod non-motile 29 mesophilic 1166018 NC_020054.1 Bac0005029 Enterobacter sp. R4-368 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. R4-368 1166130 NC_021500.1 Bac0005030 Desulfocapsa sulfexigens DSM 10523 str. Finster Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfocapsa Desulfocapsa sulfexigens anaerobic 1167006 NC_020304.1 Bac0005031 Stenotrophomonas geniculata N1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas geniculata 1167641 AJLO00000000.2 Bac0005032 Tangfeifania diversioriginum Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Tangfeifania Tangfeifania diversioriginum 1168035 FQZE00000000.1 Bac0005033 gamma proteobacterium BDW918 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae gamma proteobacterium BDW918 1168065 AJMK00000000.1 Bac0005034 Nocardioides zhouii Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides zhouii 1168729 SDWV00000000.1 Bac0005035 Enterococcus faecalis EnGen0354 str. RMC1 "Enterococcus faecalis EnGen0354 str. RMC1 is a Gram-positive, coccoid bacterium that thrives optimally at 37.0°C. As a facultative anaerobe, this strain can grow in both aerobic and anaerobic environments, allowing it to inhabit a variety of ecological niches. Its metabolic capabilities as a chemoorganotroph indicate that it utilizes organic compounds as an energy source, further enhancing its adaptability to diverse habitats.↵↵Enterococcus faecalis is known for its resilience and can be found in various environments, including soil, water, and as part of the normal flora in the gastrointestinal tracts of humans and other animals. The ability of E. faecalis RMC1 to survive in multiple habitats underscores its ecological versatility and potential role in nutrient cycling within its environments.↵↵Overall, the traits of E. faecalis RMC1, particularly its facultative anaerobic metabolism and broad habitat range, suggest that it may play a significant role in microbial communities by contributing to organic matter decomposition and influencing the dynamics of microbial interactions in complex ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1169299 ASDN00000000.1 Bac0005036 Enterococcus faecalis EnGen0359 str. TR197 "Enterococcus faecalis EnGen0359 str. TR197 is a Gram-positive cocci bacterium characterized as a facultative anaerobe and a chemoorganotroph, thriving optimally at 37.0°C. This strain belongs to the genus Enterococcus, which is notable for its ability to inhabit diverse ecological niches, including the gastrointestinal tracts of humans and other animals, as well as various environmental settings. The facultative anaerobic nature of E. faecalis TR197 allows it to survive in both oxygen-rich and oxygen-poor environments, contributing to its resilience and adaptability in fluctuating habitats.↵↵As a chemoorganotroph, E. faecalis TR197 utilizes organic compounds as energy sources, which supports its metabolic versatility. This trait enables the organism to thrive in nutrient-rich environments such as the intestines, where it can effectively compete with other microbial species. The ability to grow at physiological temperatures (37.0°C) further suggests its adaptation to warm-blooded hosts, highlighting its potential role in the gut microbiome.↵↵In summary, Enterococcus faecalis EnGen0359 str. TR197 exemplifies the ecological versatility and metabolic adaptability typical of Enterococcus species, underscoring its potential significance in various microbial ecosystems. Understanding such traits can provide insights into the organism's role in health and disease contexts, particularly in relation to its interactions within the complex microbial communities of the gastrointestinal tract." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1169307 ASDV00000000.1 Bac0005037 Citrobacter sp. KTE151 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. KTE151 1169322 ASQK00000000.1 Bac0005038 Escherichia coli KTE37 "Escherichia coli KTE37 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat. As a facultative anaerobe, E. coli KTE37 possesses the metabolic flexibility to survive in environments with or without oxygen, allowing it to adapt to varying conditions within its host. ↵↵The combination of its Gram-negative nature and rod morphology suggests that E. coli KTE37 shares common structural features with other members of the Enterobacteriaceae family, including a characteristic outer membrane and peptidoglycan layer, which may influence its interactions within host environments. The host-associated habitat indicates that this strain likely plays a role in the complex microbial communities found in the gastrointestinal tract of mammals, where it may contribute to various metabolic processes.↵↵Further exploration of Escherichia coli KTE37's traits may provide insights into its specific functions and interactions within its ecological niche, particularly regarding its role in nutrient cycling and maintaining gut homeostasis. Understanding these dynamics could shed light on the broader implications of E. coli strains in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1169354 ASUC00000000.1 Bac0005039 Escherichia coli KTE112 "Escherichia coli KTE112 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host organisms. As a facultative anaerobe, E. coli KTE112 can grow in both aerobic and anaerobic environments, allowing it to adapt to various oxygen availability conditions within its host-associated habitat.↵↵The ability of E. coli KTE112 to inhabit host environments suggests a significant role in the microbiota of its host, contributing to various biological processes, including nutrient metabolism and immune modulation. The presence of this strain in host-associated habitats highlights the intricate relationships that bacteria maintain with their hosts, potentially influencing host health and disease dynamics. Understanding the specific traits and adaptability of E. coli KTE112 may provide insights into its functional role within the microbial community of the host and its contributions to overall host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1169376 ANXP00000000.1 Bac0005040 Calothrix sp. PCC 6303 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. PCC 6303 1170562 NC_019751.1 Bac0005041 Bibersteinia trehalosi USDA-ARS-USMARC-192 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Bibersteinia Bibersteinia trehalosi 1171377 NC_020515.1 Bac0005042 Micromonospora sp. WMMB235 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. WMMB235 1172030 MDRX00000000.1 Bac0005043 Streptomyces sp. 136MFCol5.1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 136MFCol5.1 1172182 FMVI00000000.1 Bac0005044 Paraclostridium sordellii 8483 "Paraclostridium sordellii 8483 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in anaerobic environments. This organism is classified as a chemoheterotroph, utilizing organic compounds as its primary energy source. P. sordellii 8483 has been isolated from soil habitats, suggesting its role in the microbial communities within terrestrial ecosystems.↵↵The sporulating characteristic of P. sordellii 8483 indicates its capability to produce endospores, which are highly resilient structures that enable survival in harsh conditions. This trait is particularly advantageous for sustaining its presence in fluctuating environments, such as those found in soil, where nutrient availability and moisture levels can vary significantly.↵↵The anaerobic nature of this bacterium implies that it plays a crucial role in the biogeochemical cycles of its habitat, particularly in processes such as organic matter decomposition and nutrient cycling. Understanding the ecological functions of P. sordellii 8483 could provide insights into its contributions to soil health and the maintenance of microbial diversity. Overall, this organism exemplifies the complex interactions that occur within soil ecosystems, highlighting the importance of anaerobic bacteria in maintaining ecological balance." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium sordellii Positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Soil Sporulating 1172204 AJXR00000000.2 Bac0005045 Streptomyces globisporus C-1027 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces globisporus 1172567 NZ_CP013738.1 Bac0005046 Chamaesiphon minutus PCC 6605 Bacillati Cyanobacteriota Cyanophyceae Gomontiellales Chamaesiphonaceae Chamaesiphon Chamaesiphon minutus 1173020 NC_019697.1 Bac0005047 Crinalium epipsammum PCC 9333 Bacillati Cyanobacteriota Cyanophyceae Gomontiellales Gomontiellaceae Crinalium Crinalium epipsammum 1173022 NC_019734.1 Bac0005048 Gloeocapsa sp. PCC 7428 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Chroococcaceae Gloeocapsa Gloeocapsa sp. PCC 7428 1173026 NC_019746.1 Bac0005049 Allocoleopsis franciscana PCC 7113 Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Allocoleopsis Allocoleopsis franciscana 1173027 NC_019762.1 Bac0005050 Salmonella enterica subsp. enterica serovar Sarajane "Salmonella enterica subsp. enterica serovar Sarajane is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as single cells. This serovar is classified as a chemoorganotroph, utilizing organic compounds as its energy source, and is typically found in host-associated environments, indicating a close relationship with host organisms. Optimal growth occurs at 37.0°C, which aligns with the typical body temperature of many warm-blooded hosts, suggesting an adaptation to its biological niche. ↵↵As a microaerophilic organism, S. enterica serovar Sarajane requires reduced levels of oxygen for growth, which may reflect its lifestyle within host environments where oxygen concentrations can vary. The specific adaptations of this serovar to its microaerophilic conditions may influence its survival and proliferation within the host, particularly in localized environments such as the gastrointestinal tract. ↵↵Understanding the growth conditions and energy requirements of S. enterica serovar Sarajane can provide insights into its ecological role in host-associated habitats, potentially influencing microbial community dynamics and interactions within the host. Further research into these traits may elucidate the ecological impact of this serovar and its relationship with host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1173559 LKLB00000000.2 Bac0005051 Aliiroseovarius sediminilitoris "Aliiroseovarius sediminilitoris is a Gram-negative, ovoid-shaped bacterium that exhibits aerobic metabolism, thriving optimally at a temperature of 29.0 °C. This microbe is part of the diverse group of bacteria found in sedimentary environments, where its metabolic activities may play a role in nutrient cycling and the degradation of organic matter. ↵↵As a Gram-negative organism, A. sediminilitoris possesses a thin peptidoglycan layer sandwiched between an inner cytoplasmic membrane and an outer membrane containing lipopolysaccharides, which is a characteristic feature of this bacterial group. The aerobic nature of this bacterium indicates that it requires oxygen for its growth and energy production, likely utilizing aerobic respiration to metabolize substrates found in its natural habitat.↵↵The optimal growth temperature of 29.0 °C suggests that A. sediminilitoris is well-adapted to moderate environmental conditions, which may be typical of many sedimentary ecosystems. This adaptability to specific temperature ranges could influence its distribution and competitive interactions with other microorganisms in its niche.↵↵Overall, the characteristics of Aliiroseovarius sediminilitoris highlight its potential importance in sedimentary biogeochemical processes, where its aerobic metabolic functions could contribute to the overall health and sustainability of its ecological community. Understanding its role can provide insights into microbial dynamics in sediment habitats, particularly in relation to organic matter turnover and nutrient cycling." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Aliiroseovarius Aliiroseovarius sediminilitoris Gram-negative ovoid aerobic 29 mesophilic 1173584 FOJB00000000.1 Bac0005052 Ruegeria arenilitoris Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria arenilitoris aerobic 1173585 FXYG00000000.1 Bac0005053 Photorhabdus luminescens subsp. sonorensis str. Caborca Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus luminescens 1173677 SBIJ00000000.1 Bac0005054 Paenibacillus typhae "Paenibacillus typhae is a Gram-positive, rod-shaped bacterium that is characterized by its ability to form spores and its facultative aerobic/anaerobic metabolic capabilities. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for moderate environmental conditions. ↵↵As a spore-forming organism, P. typhae likely possesses mechanisms for survival in adverse conditions, allowing it to endure periods of nutrient scarcity or unfavorable environmental stressors. The facultative nature of its respiration suggests that it can adapt to varying oxygen levels, making it versatile in its ecological niches.↵↵Overall, the traits exhibited by Paenibacillus typhae point to its potential role in various biogeochemical processes, particularly in environments where organic matter decomposition is essential. Its ability to thrive in both aerobic and anaerobic conditions may facilitate its involvement in nutrient cycling, particularly in wetland ecosystems where organic substrates are abundant. This adaptability not only underscores its ecological significance but also highlights its potential contributions to soil health and nutrient availability in its natural habitats." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus typhae Gram-positive rod facultative aerobe/anaerobe 29 mesophilic spore-forming 1174501 FNDX00000000.1 Bac0005055 Pseudomonas songnenensis str. L103 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas songnenensis 1176259 RWYU00000000.2 Bac0005056 Niabella ginsenosidivorans str. BS26 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niabella Niabella ginsenosidivorans 1176587 NZ_CP015772.1 Bac0005057 Agrobacterium fabrum str. 12D13 "Agrobacterium fabrum str. 12D13 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This organism is classified as an aerobe, indicating its dependence on oxygen for growth and metabolism. A notable characteristic of A. fabrum str. 12D13 is its ability to inhabit multiple environments, suggesting a versatile ecological adaptability.↵↵The Gram-negative cell wall structure of this bacterium contributes to its unique physiological properties, which may influence its interactions within various habitats. The rod shape is typical of many bacteria in the Agrobacterium genus, allowing for motility and colonization in diverse ecological niches. The preference for a moderate temperature of 25.0°C positions A. fabrum str. 12D13 well within the range of many temperate ecosystems, where it could play a role in nutrient cycling or as a participant in microbial communities.↵↵The ability of A. fabrum str. 12D13 to thrive in various habitats could suggest its involvement in biogeochemical processes, potentially influencing plant-microbe interactions in natural and agricultural ecosystems. This adaptability may also provide insights into the organism’s potential utility in biotechnological applications, particularly in plant biotechnology, where its relatives are known for their roles in gene transfer. Understanding the ecological roles and interactions of A. fabrum str. 12D13 in its native habitats could lead to further discoveries regarding its contributions to microbial diversity and ecosystem function." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium fabrum Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1176649 NZ_CP033036.1 Bac0005058 Agrobacterium fabrum str. 1D132 "Agrobacterium fabrum str. 1D132 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolism. This microbe is known to inhabit a variety of environments, suggesting a versatile ecological niche. Its classification as an aerobe indicates that it requires oxygen for its growth and energy production, which is typical for many bacteria found in diverse habitats.↵↵The rod shape of A. fabrum str. 1D132 may contribute to its motility and ability to colonize different substrates, potentially facilitating interactions with plant hosts or other microorganisms in its environment. The ability to adapt to multiple habitats indicates a level of ecological flexibility, which may be crucial for survival in fluctuating environmental conditions.↵↵The traits of A. fabrum str. 1D132 highlight its potential role in various ecological interactions, possibly including nutrient cycling and the promotion of plant health. Its aerobic nature and optimal growth conditions may also suggest a competitive advantage in environments rich in organic matter, where oxygen is accessible. Overall, the characteristics of A. fabrum str. 1D132 underscore the complexity of microbial life and its adaptive strategies in diverse ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium fabrum Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1176649 NZ_CP033024.1 Bac0005059 Alcanivorax nanhaiticus str. 19-m-6 "Alcanivorax nanhaiticus str. 19-m-6 is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 29.0°C. This microbe is part of the Alcanivorax genus, which is characterized by its ability to degrade hydrocarbons, typically found in marine environments. The Gram-negative nature of A. nanhaiticus str. 19-m-6 suggests a cell wall structure composed of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may influence its interactions within its ecological niche.↵↵The optimal growth temperature of 29.0°C indicates a preference for moderately warm conditions, aligning with the thermal profiles often observed in marine ecosystems. This temperature range may also suggest a potential role for A. nanhaiticus str. 19-m-6 in bioremediation processes in environments subjected to hydrocarbon contamination, particularly in tropical and subtropical regions where temperatures are conducive to its growth.↵↵The unique combination of its Gram-negative morphology and optimal growth conditions could provide insights into the metabolic pathways employed by A. nanhaiticus str. 19-m-6 for hydrocarbon degradation. Investigating these pathways may further enhance our understanding of microbial adaptations to marine pollutants and their roles in maintaining ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax nanhaiticus Gram-negative rod non-motile 29 mesophilic 1177154 ARXV00000000.1 Bac0005060 Alcanivorax hongdengensis A-11-3 "Alcanivorax hongdengensis A-11-3 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is characterized by its non-spore-forming nature. This microbe thrives optimally at a temperature of 25.0°C, suggesting its adaptation to moderate environmental conditions. ↵↵The Gram-negative cell wall structure of A. hongdengensis A-11-3 is indicative of its potential interactions in various habitats, particularly in environments rich in organic materials. While the specific ecological role of this strain remains to be fully elucidated, its genus, Alcanivorax, is known for its association with the degradation of hydrocarbons, especially in marine ecosystems. This points to a potential role in bioremediation processes, where such microorganisms contribute to the breakdown of environmental pollutants.↵↵Understanding the metabolic capabilities and environmental preferences of A. hongdengensis A-11-3 could provide insights into its utility in biotechnological applications, particularly in the management of oil spills and other hydrocarbon-related environmental challenges. The strain's aerobic nature and growth at moderate temperatures may facilitate its use in engineered systems aimed at pollutant degradation in aquatic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax hongdengensis Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 1177179 AMRJ00000000.1 Bac0005061 Kosakonia radicincitans DSM 16656 str. E. radicincitans D5/23 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia radicincitans 1177180 NZ_CP018016.1 Bac0005062 Alcanivorax jadensis T9 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax jadensis 1177181 ARXU00000000.1 Bac0005063 Prevotella jejuni str. CD3:33 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella jejuni 1177574 NZ_CP023864.1 Bac0005064 Thalassospira xianhensis MCCC 1A02616 "Thalassospira xianhensis MCCC 1A02616 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic growth, with an optimal growth temperature of 29.0°C. This microbe is classified within the diverse group of Thalassospira species, which are known to thrive in marine environments. The Gram-negative nature of T. xianhensis suggests a complex cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its environmental adaptability.↵↵As a facultative aerobe/anaerobe, T. xianhensis can utilize both aerobic respiration and fermentation processes depending on the availability of oxygen. This metabolic flexibility may confer advantages in fluctuating oxygen conditions typically found in marine habitats, enabling it to occupy a range of ecological niches. The optimal growth temperature of 29.0°C indicates a preference for moderately warm environments, which is consistent with its isolation from marine sources.↵↵Further investigation into the specific ecological roles of Thalassospira xianhensis in its natural habitat could reveal insights into its interactions with other marine microorganisms and its potential contributions to nutrient cycling in aquatic ecosystems. Understanding these dynamics may also shed light on the broader implications of Thalassospira species in marine microbiology and ecology." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira xianhensis Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 1177929 JPWA00000000.1 Bac0005065 Paracidovorax wautersii Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax wautersii 1177982 FONX00000000.1 Bac0005066 Halomonas huangheensis str. BJGMM-B45 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas huangheensis 1178482 AVBC00000000.1 Bac0005067 Spirosoma montaniterrae str. DY10 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma montaniterrae 1178516 NZ_CP014263.1 Bac0005068 Pontibacter ramchanderi str. LP43 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter ramchanderi 1179743 PJMU00000000.1 Bac0005069 Saccharothrix espanaensis DSM 44229 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix espanaensis 1179773 NC_019673.1 Bac0005070 Pseudomonas sp. M47T1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. M47T1 1179778 AJWX00000000.1 Bac0005071 Escherichia coli KTE193 "Escherichia coli KTE193 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the body temperature of its host organisms, suggesting a specialized adaptation to a host-associated habitat. As a facultative anaerobe, E. coli KTE193 can grow in both aerobic and anaerobic environments, allowing it to colonize a variety of ecological niches within its host. ↵↵The Gram-negative cell wall structure of E. coli KTE193 is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in the complex microenvironments found in the gastrointestinal tract. This adaptability enables the strain to engage in diverse metabolic processes, facilitating its survival and growth in fluctuating oxygen conditions.↵↵Overall, E. coli KTE193 exemplifies the versatility of the Escherichia coli species in inhabiting host-associated environments, highlighting its potential role in the microbial ecosystem of the host. Understanding the specific traits of E. coli KTE193 can provide insights into its functional capabilities and interactions within the host microbiome, which are crucial for maintaining host health and homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1181739 ANTH00000000.1 Bac0005072 Deinococcus puniceus str. DY1 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus puniceus 1182568 NZ_CP011387.1 Bac0005073 Escherichia sp. KTE52 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. KTE52 1182659 ASUT00000000.1 Bac0005074 Escherichia coli KTE66 "Escherichia coli KTE66 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is indicative of its adaptability in various ecological niches. The optimal growth temperature for E. coli KTE66 is around 37.0 degrees Celsius, aligning with the physiological temperature of its host organisms, which may include a range of mammals.↵↵E. coli KTE66 is primarily host-associated, suggesting a symbiotic or commensal relationship with its host. This association emphasizes the bacterium's role in the complex microbial communities found within the gastrointestinal tracts of animals, where it may contribute to nutrient absorption and gut health. The ability to exist in pairs or as single cells may facilitate its colonization and interaction with host tissues, enhancing its survival and function within the host environment.↵↵Further investigation into E. coli KTE66 could provide insights into its specific interactions with host microbiomes, potentially revealing mechanisms of cooperation or competition that influence gut ecology. Understanding these dynamics could contribute to our knowledge of microbial roles in health and disease, particularly within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182673 ANUL00000000.1 Bac0005075 Escherichia coli KTE75 "Escherichia coli KTE75 is a rod-shaped, Gram-negative bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli KTE75 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, which enhances its survival and metabolic versatility within varied host conditions.↵↵As a member of the Enterobacteriaceae family, E. coli KTE75's physiology is reflective of its ecological niche, where it can play roles in nutrient cycling and gut microbiota composition. The ability to thrive in diverse oxygen levels may facilitate its interactions with other microbial communities within the gastrointestinal tract. The ecological significance of E. coli KTE75 may extend beyond mere commensalism, as it could influence host health and the dynamics of microbial communities through its metabolic activities and interactions with other microorganisms. Understanding the specific traits of E. coli KTE75 can contribute to broader insights into the functional roles of enteric bacteria in their respective environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182682 ANUO00000000.1 Bac0005076 Escherichia coli KTE107 "Escherichia coli KTE107 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which is indicative of its adaptability to various habitats. E. coli KTE107's optimal growth temperature is around 37.0°C, aligning with the typical human body temperature, suggesting a close association with host organisms.↵↵As a host-associated microbe, E. coli KTE107 may inhabit the gastrointestinal tract of warm-blooded animals, where it can play roles in digestion and nutrient absorption. Given its facultative anaerobic nature, E. coli KTE107 may also contribute to the complex microbial community dynamics within the host, potentially influencing nutrient cycling and the maintenance of gut health. ↵↵The presence of this strain in host-associated environments underscores the significance of E. coli as a model organism for studying microbial interactions within the gut microbiome. Understanding the specific traits and behaviors of E. coli KTE107 could provide insights into its role in host-microbe interactions and the broader implications for microbial ecology and health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182703 ASVI00000000.1 Bac0005077 Escherichia coli KTE146 "Escherichia coli KTE146 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0 °C, which coincides with the average human body temperature, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli KTE146 can utilize both aerobic and anaerobic metabolic pathways, allowing it to survive in a variety of environments within the host.↵↵The ability of E. coli KTE146 to grow in the presence or absence of oxygen suggests a versatile metabolic capacity, which may play a role in its interactions within the host's microbiome. This adaptability not only facilitates its survival in fluctuating oxygen levels but also enables it to compete effectively with other microorganisms in the complex microbial communities found in various host-associated environments. Understanding the physiological traits of E. coli KTE146 can provide insights into its potential roles in the host's microbiota, contributing to nutrient metabolism and overall microbial balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182725 ANWM00000000.1 Bac0005078 Pyrococcus sp. ST04 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp. ST04 1183377 NC_017946.1 Bac0005079 Agrobacterium salinitolerans str. YIC 5082 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium salinitolerans 1183413 MRDH00000000.1 Bac0005080 Agrobacterium deltaense RV3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium deltae 1183426 FBWD00000000.1 Bac0005081 Agrobacterium deltaense Zutra 3/1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium deltae 1183427 FBWG00000000.1 Bac0005082 Agrobacterium fabacearum S56 str. S56 "Agrobacterium fabacearum S56 str. S56 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This species is versatile in its habitat, demonstrating the ability to inhabit multiple ecological niches. ↵↵As a member of the Agrobacterium genus, A. fabacearum S56 str. S56 is likely involved in interactions with plants, a characteristic common to many of its relatives. Its Gram-negative cell wall structure may confer specific advantages in environmental adaptability, such as resistance to certain antibiotics and enhanced survival in varied conditions. The aerobic nature of this bacterium suggests that it relies on oxygen for its metabolic processes, which can influence its distribution and interactions within its habitats.↵↵Understanding the physiological traits and environmental preferences of Agrobacterium fabacearum S56 str. S56 can provide insights into its potential roles in soil health and plant-microbe interactions. Its adaptability to multiple habitats indicates a possible role in nutrient cycling and symbiotic relationships with plants, making it a subject of interest for further research in agricultural microbiology and environmental science." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1183429 FBWB00000000.1 Bac0005083 Agrobacterium fabacearum TT111 "Agrobacterium fabacearum TT111 is a Gram-negative, rod-shaped bacterium that thrives optimally at 25.0 °C and exhibits aerobic metabolism. This microbe is versatile in its habitat, indicating its ability to adapt to various environmental conditions. ↵↵As a member of the Agrobacterium genus, A. fabacearum TT111 is likely involved in interactions with plant hosts, although specific details about its ecological roles are not provided. The traits of this microbe suggest that it may play a significant role in soil ecosystems, particularly in relation to its potential interactions with legumes, given the general association of Agrobacterium species with these plants.↵↵The aerobic nature of A. fabacearum TT111 implies that it requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability varies. Understanding the physiological traits of this organism might provide insights into its ecological functions and interactions within its habitats, particularly in relation to nutrient cycling and plant-microbe associations." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1183430 FBWA00000000.1 Bac0005084 Agrobacterium tomkonis CFBP 6623 str. CFBP 6623 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tomkonis 1183432 FBWK00000000.1 Bac0005085 Kineosphaera limosa NBRC 100340 Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Kineosphaera Kineosphaera limosa aerobic 29 mesophilic 1184609 BAHD00000000.1 Bac0005086 Micromonospora wenchangensis str. CCTCC AA 2012002 "Micromonospora wenchangensis str. CCTCC AA 2012002 is a Gram-positive, aerobic bacterium characterized by its ability to form spores. This strain exhibits optimal growth at a temperature of 32.0°C, indicating a preference for moderately warm environments. As a member of the Micromonospora genus, it is part of a group known for its diverse metabolic capabilities and ecological roles in soil and decaying plant matter.↵↵The spore formation of M. wenchangensis provides it with a survival advantage in fluctuating environmental conditions, allowing it to persist in habitats where nutrients may be temporarily scarce or where adverse conditions may arise. The Gram-positive nature of this bacterium suggests a thick peptidoglycan layer in its cell wall, which could contribute to its resilience against certain environmental stresses.↵↵Overall, the characteristics of Micromonospora wenchangensis str. CCTCC AA 2012002 underscore its potential role as a decomposer in terrestrial ecosystems, where it might contribute to nutrient cycling and the breakdown of organic matter. This ecological function is particularly significant as it may facilitate soil health and the maintenance of microbial diversity in its native habitat." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora wenchangensis Gram-positive non-motile aerobic 32 mesophilic spore-forming 1185415 MZMV00000000.1 Bac0005087 Mycobacteroides abscessus subsp. abscessus Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus 1185650 FSAD00000000.1 Bac0005088 Sinorhizobium fredii USDA 257 str. USDA257 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 1185652 NC_018000.1 Bac0005089 Planococcus antarcticus DSM 14505 "Planococcus antarcticus DSM 14505 is a Gram-positive, non-spore-forming spherical bacterium that exhibits optimal growth at a temperature of 16.0°C. This microbe is part of the broader Planococcus genus, which is known for its adaptability to various environments, although specific ecological niches for this strain have not been detailed in the current data.↵↵As a Gram-positive organism, Planococcus antarcticus possesses a thick peptidoglycan layer in its cell wall, which is characteristic of this group and plays a critical role in its structural integrity and response to environmental stresses. The spherical morphology of this bacterium suggests it may utilize various mechanisms for motility and nutrient acquisition, potentially influencing its ecological interactions.↵↵Given its optimal growth temperature of 16.0°C, Planococcus antarcticus is likely adapted to cold environments, such as polar regions or deep-sea habitats, where temperatures are consistently low. This trait aligns with the broader ecological significance of microorganisms that thrive in extreme conditions, contributing to biogeochemical cycles and the stability of their ecosystems.↵↵Overall, Planococcus antarcticus DSM 14505 exemplifies the resilience and adaptability of microbial life in cold environments, showcasing the evolutionary strategies that enable survival and function in such specialized niches." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus antarcticus Gram-positive sphere 16 psychrotolerant non-spore-forming 1185653 NZ_CP016535.2 Bac0005090 Pyrococcus furiosus COM1 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus 1185654 NC_018092.1 Bac0005091 Zunongwangia atlantica 22II14-10F7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zunongwangia Zunongwangia atlantica 1185767 ARYN00000000.1 Bac0005092 Fibrisoma limi BUZ 3 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Fibrisoma Fibrisoma limi aerobic 1185876 CAIT00000000.1 Bac0005093 Natrinema salaciae Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema salaciae 1186196 FOFD00000000.1 Bac0005094 Cecembia calidifontis str. DSM 21411 "Cecembia calidifontis str. DSM 21411 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal growth temperature of 45.0°C. This thermophilic organism does not form spores, which suggests that it relies on other mechanisms for survival in potentially adverse environmental conditions. ↵↵The Gram-negative nature of Cecembia calidifontis indicates that it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may contribute to its resilience in high-temperature environments. As an aerobic bacterium, it requires oxygen for its metabolic processes, positioning it within ecosystems where oxygen is readily available, such as hot springs or thermally enriched soils.↵↵The specific adaptation to higher temperatures may confer a competitive advantage in certain niches, allowing Cecembia calidifontis to utilize organic substrates efficiently in thermophilic habitats. Understanding the physiological traits of this microbe can provide insights into its potential roles in biogeochemical cycles, particularly in thermally active environments where microbial activity is critical for nutrient degradation and turnover." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia calidifontis Gram-negative rod non-motile aerobic 45 thermophilic non-spore-forming 1187080 SGXG00000000.1 Bac0005095 Methylobacterium tarhaniae str. DSM 25844 "Methylobacterium tarhaniae str. DSM 25844 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This species is a member of the Methylobacterium genus, which is known for its ability to utilize methanol and other one-carbon compounds as carbon sources. ↵↵As a Gram-negative organism, Methylobacterium tarhaniae possesses a characteristic outer membrane that may contribute to its environmental resilience and metabolic versatility. The rod-shaped morphology of this microbe suggests potential motility, which could enhance its ability to colonize various niches or substrates. Its aerobic nature indicates a reliance on oxygen for respiration, implicating it in various ecological roles, particularly in environments rich in organic matter.↵↵The optimal growth temperature of 25.0°C situates Methylobacterium tarhaniae within a mesophilic range, indicating its potential prevalence in temperate environments. This temperature preference may align with its ecological niches, such as soil or plant-associated habitats, where it could play a role in nutrient cycling or plant-microbe interactions. ↵↵The unique metabolic capabilities of Methylobacterium tarhaniae, combined with its specific growth conditions, suggest that it may be an important player in the degradation of methanol and other organic compounds in its native environment, contributing to carbon cycling and potentially influencing the dynamics of microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium tarhaniae Gram-negative rod aerobic 25 mesophilic 1187852 LABZ00000000.1 Bac0005096 Metamycoplasma auris 15026 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma auris 1188233 AORI00000000.1 Bac0005097 Mesomycoplasma ovipneumoniae 14811 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae 1188239 JFAD00000000.1 Bac0005098 Mycoplasma yeatsii 13926 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii 1188240 AORK00000000.1 Bac0005099 Mycoplasmopsis bovis 8790 "Mycoplasmopsis bovis 8790 is a Gram-negative, coccoid bacterium characterized by its occurrence as single cells rather than in clusters or chains. This nonsporulating microbe operates as a chemoheterotroph, deriving its energy from organic compounds, which is indicative of its adaptation to a host-associated habitat. Optimal growth occurs at 37.0°C, aligning with the typical body temperature of warm-blooded hosts.↵↵As a facultative anaerobe, Mycoplasmopsis bovis 8790 possesses the versatility to thrive in both aerobic and anaerobic environments, which may enhance its survival and metabolic efficiency within various host tissues. This adaptability could play a significant role in its ecological niche, potentially allowing it to exploit a range of microenvironments within the host organism.↵↵The combination of its structural traits and metabolic capabilities suggests that Mycoplasmopsis bovis 8790 may engage in complex interactions with its host, possibly influencing host metabolism or contributing to the microbial community dynamics. Understanding these traits provides insights into the ecological roles that this microbe may occupy, particularly in relation to its host's health and the broader microbiome." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis Negative Cocci No 1 1 Facultative 37 Chemoheterotroph Mesophilic HostAssociated Free living Singles Nonsporulating 1188242 LAUS00000000.1 Bac0005100 Cereibacter changlensis JA139 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter changlensis 1188249 PZKG00000000.1 Bac0005101 Corallococcus macrosporus DSM 14697 Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus 1189310 NZ_CP022203.1 Bac0005102 Indibacter alkaliphilus LW1 "Indibacter alkaliphilus LW1 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 32.0°C. This microbe is notable for its ability to thrive in alkaline environments, which suggests a potential adaptation to specific ecological niches where pH levels are elevated. The Gram-negative cell wall structure of I. alkaliphilus LW1 is indicative of its outer membrane composition, which may contribute to its resilience in various environmental conditions.↵↵The aerobic nature of this organism implies that it requires oxygen for its metabolic processes, which could influence its distribution in habitats where oxygen is readily available. The optimal growth temperature of 32.0°C positions I. alkaliphilus LW1 in a mesophilic range, suggesting it may be well-suited for environments that are neither too cold nor excessively hot. This temperature preference may also reflect its potential role in biogeochemical cycles, particularly in alkaline soils or aquatic systems that maintain moderate thermal conditions.↵↵In summary, Indibacter alkaliphilus LW1 represents an intriguing example of microbial adaptation to alkaline and aerobic conditions. Its physiological traits may offer insights into the metabolic pathways utilized by bacteria in similar environments, potentially informing biotechnological applications where alkalinity and oxygen availability are relevant factors." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Indibacter Indibacter alkaliphilus Gram-negative rod non-motile aerobic 32 mesophilic 1189612 ALWO00000000.2 Bac0005103 Pseudomonas asturiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas asturiensis 1190415 FRDA00000000.1 Bac0005104 Geodermatophilus telluris "Geodermatophilus telluris is a Gram-positive, aerobic bacterium characterized by its ability to form spores. This microbe is part of the diverse community of soil-dwelling microorganisms and is notable for its resilience in various environmental conditions. The spore-forming capability of G. telluris suggests an adaptation mechanism allowing it to withstand adverse circumstances, such as nutrient depletion or desiccation, common in terrestrial habitats.↵↵As an aerobic organism, G. telluris requires oxygen for its metabolic processes, which positions it among the microbes that thrive in well-oxygenated environments. The presence of spores indicates that G. telluris can enter a dormant state, potentially extending its survival during unfavorable conditions and contributing to its distribution in nutrient-rich soils. ↵↵The ecological role of G. telluris may involve participation in the cycling of organic matter and nutrients within soil ecosystems, supporting soil health and contributing to microbial diversity. Its ability to form spores enhances its survival and dispersal, allowing it to colonize varied substrates, which may influence soil structure and function. This adaptability underscores the importance of G. telluris in the microbiome of terrestrial environments, suggesting it may play a crucial role in maintaining ecological balance and promoting soil fertility." Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus telluris Gram-positive aerobic spore-forming 1190417 FMZF00000000.1 Bac0005105 Pseudoalteromonas shioyasakiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas shioyasakiensis 1190813 LWFC00000000.1 Bac0005106 Helicobacter pylori FD423 "Helicobacter pylori FD423 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, aligning with the typical physiological conditions of its host environment. H. pylori FD423 is predominantly associated with host organisms, indicating a specialized niche where it likely interacts closely with the host's biological systems.↵↵The microaerophilic nature of H. pylori FD423 suggests that it requires reduced oxygen levels for optimal growth and metabolism, which is a common trait among bacteria inhabiting the gastrointestinal tract. This adaptation may facilitate its survival in the gastric environment, where oxygen concentrations are lower than those found in the external atmosphere. ↵↵The solitary arrangement of H. pylori FD423 cells could play a role in its ecological interactions within the host, potentially influencing its ability to colonize and persist in the gastric niche. Understanding the specific growth conditions and ecological associations of H. pylori FD423 may provide insights into its physiological adaptation strategies and potential implications for host-microbe interactions. Further investigation into its biology and ecology could elucidate its role in the complex microbial communities present in the gastrointestinal system." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191279 AKHM00000000.2 Bac0005107 Helicobacter pylori FD430 "Helicobacter pylori FD430 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which closely aligns with the average human body temperature, reflecting its adaptation to a host-associated habitat. H. pylori FD430 is classified as microaerophilic, requiring reduced levels of oxygen for growth, which is consistent with its ecological niche within the gastrointestinal tract of hosts.↵↵The microaerophilic nature of H. pylori FD430 suggests that it occupies a unique ecological role, potentially influencing the microbial dynamics within the stomach environment. This adaptation may allow it to survive and proliferate in the acidic conditions of the gastric niche, where oxygen levels are limited compared to atmospheric conditions. Understanding the physiological traits of H. pylori FD430 not only elucidates its survival strategies but also highlights the complex interactions it may have within the host microbiome, underscoring the importance of this microbe in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191280 AKHN00000000.2 Bac0005108 Helicobacter pylori FD506 "Helicobacter pylori FD506 is a Gram-negative, microaerophilic bacterium characterized by its distinct spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average human body temperature, indicating its adaptation to a host-associated habitat. ↵↵H. pylori FD506 is primarily known for colonizing the gastric mucosa of the stomach, where it can influence local environments. Its microaerophilic nature suggests that it thrives in low-oxygen conditions, which are prevalent in the gastric niche. This adaptation may afford the bacterium a competitive advantage in colonizing and surviving in the harsh conditions of the stomach, which is characterized by high acidity and fluctuating oxygen levels.↵↵The ability of H. pylori FD506 to persist in this unique environment highlights its potential role in the complex interactions between host physiology and microbial communities within the gastrointestinal tract. Understanding the traits and behaviors of H. pylori FD506 may provide valuable insights into the dynamics of host-microbe relationships, particularly in the context of gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191281 AKHO00000000.2 Bac0005109 Helicobacter pylori FD568 "Helicobacter pylori FD568 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. Optimal growth is observed at a temperature of 37.0°C, aligning with the physiological conditions found within the human stomach, its primary habitat. This organism is recognized for its association with the gastric mucosa, where it may influence local microbial communities and host interactions. ↵↵As a microaerophile, H. pylori FD568 requires reduced levels of oxygen for growth, which is consistent with the low-oxygen environment typically found in the stomach. This adaptation may play a role in its survival and colonization within the gastric niche, where it can thrive while evading the host's immune responses. ↵↵The unique characteristics of H. pylori FD568 highlight its specialized role in the human microbiome, particularly in the context of gastric health. Its ability to inhabit a highly acidic environment, coupled with its spiral morphology, suggests that it may possess specific adaptations for navigating and colonizing the gastric lining. This microbe exemplifies the complex interactions that can occur between host-associated bacteria and their environments, emphasizing the significance of understanding microbial traits in the context of human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191282 AKHQ00000000.2 Bac0005110 Helicobacter pylori FD577 "Helicobacter pylori FD577 is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and solitary cellular arrangement. This strain thrives in host-associated environments, with an optimal growth temperature of 37.0°C, which aligns with the typical body temperature of mammals, suggesting its adaptation to colonization in the gastric mucosa of various hosts. ↵↵As a member of the Helicobacter genus, H. pylori FD577 is likely to exhibit the motility commonly associated with spirilla, facilitating its movement through viscous environments such as gastric mucus. The microaerophilic nature of this bacterium indicates a specific oxygen requirement, necessitating environments with reduced oxygen levels, which is typical of the gastric niche where it resides. ↵↵This ecological adaptation not only enables H. pylori FD577 to survive in the hostile acidic environment of the stomach but also highlights its potential role in the complex interactions within the host's microbiome. Understanding the traits of H. pylori FD577 could provide insights into its ecological niche and its interactions with host physiology, particularly in relation to gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191283 AKHR00000000.2 Bac0005111 Helicobacter pylori FD662 "Helicobacter pylori FD662 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cellular arrangement. This strain thrives optimally at 37.0°C, reflecting its adaptation to the human body, where it is typically found associated with host tissues. As a member of the Helicobacter genus, H. pylori FD662's morphological and physiological traits suggest a specialization for survival within the gastric environment, which is characterized by low oxygen tension and specific temperature ranges. ↵↵The microaerophilic nature of H. pylori FD662 indicates that it requires reduced levels of oxygen for growth, a condition that aligns with its habitat in the stomach, where oxygen levels are lower than in the ambient atmosphere. Its spiral shape may confer advantages in motility through the viscous mucus lining of the gastric epithelium, facilitating its colonization and persistence in a challenging environment. ↵↵In conclusion, the unique combination of traits exhibited by H. pylori FD662, including its Gram-negative structure, spirilla morphology, and microaerophilic lifestyle, underscores its specialized adaptation to a host-associated niche, potentially influencing its interactions with the gastric microbiome and the host immune response. This adaptability may play a role in its ecological dynamics within the human stomach, emphasizing the intricate relationships between microbial inhabitants and their environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191284 AKHT00000000.2 Bac0005112 Helicobacter pylori FD719 "Helicobacter pylori FD719 is a Gram-negative bacterium characterized by its spiral shape and occurrence as single cells. This microbe is microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which is consistent with its habitat that is associated with host organisms. H. pylori FD719 demonstrates an optimal growth temperature of 37.0°C, aligning with the typical conditions found in the human stomach, where it is commonly located.↵↵As a spirilla, H. pylori FD719 exhibits a unique morphology that may facilitate its motility within the viscous gastric environment, enabling it to navigate through the mucus layer lining the stomach. Its association with host organisms highlights its potential role in specific gastrointestinal ecosystems. Importantly, the microaerophilic adaptation of this bacterium suggests a specialized metabolic pathway that allows it to utilize the limited oxygen available in the gastric niche, which is crucial for its survival and proliferation.↵↵The specific adaptations of H. pylori FD719 to its host-associated habitat may provide insights into its interactions with the host's immune system and the microbial community within the gastrointestinal tract. Understanding these traits can contribute to a broader comprehension of the ecological dynamics at play in the human microbiome and the potential consequences of perturbations within this unique environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191286 AKHU00000000.2 Bac0005113 Vibrio genomosp. F6 str. FF-238 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio genomosp. F6 1191298 AJYW00000000.2 Bac0005114 Flammeovirga sp. MY04 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga sp. MY04 1191459 NZ_CP003562.2 Bac0005115 Acinetobacter venetianus RAG-1 = CIP 110063 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter venetianus 1191460 APPO00000000.1 Bac0005116 Helicobacter pylori FD535 "Helicobacter pylori FD535 is a Gram-negative microbe characterized by its spirilla shape and single-cell arrangement. This organism thrives in a microaerophilic environment, indicating that it requires reduced levels of oxygen for optimal growth. H. pylori FD535 has an optimal growth temperature of 37.0 °C, which aligns with conditions found in the human stomach, its primary habitat. ↵↵As a host-associated microbe, H. pylori FD535 is adapted to life within the gastric environment, where it may play a role in various physiological processes. Its unique morphology as a spiral-shaped bacterium allows it to navigate through the viscous mucus layer of the gastric epithelium, potentially influencing its interaction with the host's immune response.↵↵The adaptation to a microaerophilic lifestyle suggests that H. pylori FD535 may utilize specific metabolic pathways that are efficient under low oxygen conditions, possibly utilizing fermentation or anaerobic respiration. Understanding the traits of H. pylori FD535 can provide insights into its ecological niche within the human host and its potential interactions with gut microbiota, which may have implications for gastrointestinal health and disease. Further research into its metabolic capabilities and host interactions could elucidate its role in the complex ecosystem of the human stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191464 AKHP00000000.2 Bac0005117 Granulosicoccus antarcticus IMCC3135 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Granulosicoccaceae Granulosicoccus Granulosicoccus antarcticus 1192854 NZ_CP018632.1 Bac0005118 Leptospira mayottensis 200901116 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira mayottensis 1192864 NZ_CP024873.1 Bac0005119 Leptospira borgpetersenii serovar Pomona str. 200901868 "Leptospira borgpetersenii serovar Pomona str. 200901868 is a Gram-negative, nonsporulating microbe characterized by its spirilla shape and aerobic metabolic requirements. This organism is known to be host-associated, suggesting a close relationship with its host organisms, which may provide a suitable environment for its growth and survival. ↵↵As a member of the genus Leptospira, this strain is part of a group of bacteria that exhibit distinctive helical forms and are typically found in moist environments. The aerobic nature of L. borgpetersenii serovar Pomona str. 200901868 indicates that it relies on oxygen for its metabolic processes, which may influence its distribution and ecological interactions within its host.↵↵Given its host-associated habitat, this strain may be involved in complex interactions with the host's immune system and microbiota. Understanding the specific ecological roles of L. borgpetersenii serovar Pomona str. 200901868 could provide insights into its potential impacts on host health and disease dynamics, particularly in environments where it may be transmitted between hosts. This relationship underscores the importance of studying such microorganisms within their ecological contexts to better comprehend their biological significance and potential applications in microbiology and public health." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 1192866 AKWF00000000.2 Bac0005120 Leptospira fainei serovar Hurstbridge str. BUT 6 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira fainei 1193011 AKWZ00000000.2 Bac0005121 Leptospira sp. Fiocruz LV4135 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira sp. Fiocruz LV4135 1193013 AOHI00000000.1 Bac0005122 Leptospira interrogans serovar Lora str. TE 1992 "Leptospira interrogans serovar Lora str. TE 1992 is a Gram-negative, spiral-shaped bacterium classified within the genus Leptospira. This strain exhibits a distinctive spirilla morphology, which is typical of its genus, and is adapted to thrive in host-associated habitats. Optimal growth for L. interrogans serovar Lora occurs at a temperature of 28.0°C, indicating a preference for moderate environmental conditions that may be encountered within various host organisms. As an aerobic microbe, this strain requires oxygen for its metabolic processes, which aligns with the metabolic characteristics observed in other members of the Leptospira genus.↵↵The habitat specificity of L. interrogans serovar Lora str. TE 1992 suggests a potential role in the host's microbiome, although specific interactions with host organisms or implications for host health are not detailed in the provided traits. The association with living hosts may facilitate the bacterium's survival and propagation, as well as potentially influencing its ecological niche. The unique combination of its morphological characteristics, growth conditions, and habitat preference highlights its adaptability to particular environments, reinforcing the importance of host-associated lifestyles in the ecology of pathogenic and non-pathogenic bacteria alike. Further studies may reveal insights into its interactions within host ecosystems and its potential implications for host health and disease dynamics." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1193028 AKWW00000000.2 Bac0005123 Leptospira interrogans str. FPW1039 "Leptospira interrogans str. FPW1039 is a Gram-negative, aerobic bacterium characterized by its spiral shape, typical of the genus Leptospira. This strain thrives optimally at a temperature of 28.0°C, which suggests a preference for moderate environmental conditions. As a host-associated microbe, L. interrogans str. FPW1039 likely resides in specific host organisms, although the precise nature of these associations is not detailed in the available data.↵↵The spiral morphology of this bacterium, combined with its aerobic nature, positions it well for survival in oxygen-rich environments, potentially facilitating its interaction with host systems. The ecological implications of its habitat suggest a role in the microbiomes of various animals, which may contribute to the understanding of Leptospira's life cycle and transmission dynamics.↵↵The preference for a moderate temperature and aerobic conditions may also indicate adaptations that allow L. interrogans str. FPW1039 to exploit specific niches within host organisms, where it may engage in complex interactions with host immune responses and other microbial populations. This adaptability underscores the importance of studying such strains to unravel their ecological roles and potential impacts on host health and disease dynamics." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1193040 AKWR00000000.2 Bac0005124 Leptospira santarosai str. AIM Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 1193056 AKWT00000000.2 Bac0005125 Leptospira santarosai str. JET Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 1193057 AKWS00000000.2 Bac0005126 Leptospira santarosai str. CBC1416 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 1193059 AKWE00000000.2 Bac0005127 Leptospira wolffii serovar Khorat str. Khorat-H2 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira wolffii 1193069 AKWX00000000.2 Bac0005128 Parascardovia denticolens IPLA 20019 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Parascardovia Parascardovia denticolens 1193128 AKII00000000.1 Bac0005129 Phycicoccus elongatus Lp2 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Phycicoccus Phycicoccus elongatus aerobic 29 mesophilic 1193181 CAIZ00000000.1 Bac0005130 Nostocoides australiense Ben110 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Nostocoides Nostocoides australiense 1193182 CAJA00000000.1 Bac0005131 Nostocoides jenkinsii Ben 74 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Nostocoides Nostocoides jenkinsii 1193518 CAJC00000000.1 Bac0005132 Staphylococcus aureus subsp. aureus CN1 "Staphylococcus aureus subsp. aureus CN1 is a Gram-positive coccus that typically forms clusters or singles. This bacterium is classified as facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which may contribute to its versatility in various host-associated habitats. It exhibits optimal growth at a temperature of 3.0°C, suggesting a potential adaptation to cooler environments or specific niches within host organisms.↵↵As a member of the Staphylococcus genus, this subspecies shares general characteristics with its relatives, including the ability to colonize a variety of host tissues. However, the specific ecological roles and interactions of S. aureus subsp. aureus CN1 within its host-associated habitats remain to be elucidated. Its facultative anaerobic nature may enable it to exploit different metabolic pathways depending on the oxygen availability in its environment, potentially allowing it to occupy diverse ecological niches. ↵↵Understanding the physiological traits of S. aureus subsp. aureus CN1 provides insight into its adaptability and survival strategies in host-associated environments, which could inform future studies on its ecological interactions and potential implications in microbial communities." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 1193576 NC_022226.1 Bac0005133 Neobacillus mesonae str. H20-5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Neobacillus Neobacillus mesonae 1193713 NZ_CP022572.1 Bac0005134 Pseudomonas syringae pv. actinidiae ICMP 18807 "Pseudomonas syringae pv. actinidiae ICMP 18807 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a heterotroph, deriving its energy from organic compounds. This microbe is capable of thriving in multiple habitats, indicating a versatile adaptability to various environmental conditions. As an aerobic organism, it requires oxygen for growth and metabolic processes.↵↵The genetic and metabolic diversity of Pseudomonas syringae pv. actinidiae ICMP 18807 contributes to its ability to colonize different environments, potentially influencing plant health in its native habitat. This adaptability may play a role in its interactions with host plants, making it a subject of interest in studies related to plant-microbe interactions and agricultural management. Understanding these traits could provide insights into the ecological roles that this bacterium plays and its responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 1194404 AOKG00000000.1 Bac0005135 Pseudomonas syringae pv. actinidiae ICMP 19096 "Pseudomonas syringae pv. actinidiae ICMP 19096 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is categorized as a heterotroph, utilizing organic compounds as its energy source, and it requires oxygen for growth, indicating that it is an aerobic organism. ↵↵The habitat of Pseudomonas syringae pv. actinidiae ICMP 19096 is noted to be diverse, which suggests a broad ecological versatility. This adaptability to multiple environments may contribute to its survival and persistence in various ecological niches, potentially influencing local microbial communities. This characteristic could also play a role in its interactions with plant hosts, highlighting the importance of environmental factors in shaping the dynamics of plant-microbe interactions. Understanding the ecological role of this bacterium may provide insights into its behavior in different habitats and its potential effects on plant health and microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 1194405 AOKF00000000.1 Bac0005136 Zymomonas mobilis subsp. mobilis NRRL B-12526 "Zymomonas mobilis subsp. mobilis NRRL B-12526 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs. This microbe is classified as facultatively anaerobic, meaning it can grow in both the presence and absence of oxygen, allowing it to thrive in various environments. ↵↵Zymomonas mobilis is notable for its ability to ferment sugars, particularly glucose, fructose, and sucrose, into ethanol and carbon dioxide, making it of considerable interest in the field of biofuel production. This fermentation process is characterized by its efficient conversion of sugars into alcohol, which can be harnessed for renewable energy applications. ↵↵Additionally, the metabolic pathways utilized by Zymomonas mobilis include the Entner-Doudoroff pathway, which distinguishes it from many other fermentative bacteria that predominantly use the glycolytic pathway. This unique metabolic capability highlights its potential utility in biotechnological applications, particularly in the production of bioethanol.↵↵The ecological role of Zymomonas mobilis subsp. mobilis may extend to its contributions in natural environments where fermentation occurs, such as in the digestive tracts of certain herbivores or in decaying plant material. Its ability to adapt to varying oxygen levels and efficiently convert available sugars underscores its ecological versatility and relevance in carbon cycling processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Zymomonadaceae Zymomonas Zymomonas mobilis Negative Rod Yes 1 2 Facultative Mesophilic Free living Pairs 1194424 NZ_CP003713.1 Bac0005137 Zymomonas mobilis subsp. mobilis NRRL B-12526 str. NRRL B-12526 (CICC 10225) "Zymomonas mobilis subsp. mobilis NRRL B-12526 str. NRRL B-12526 (CICC 10225) is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs and exhibits facultative anaerobic metabolism. This strain is characterized by its ability to ferment sugars, particularly glucose and fructose, into ethanol and carbon dioxide, making it of interest in biofuel production. ↵↵As a member of the Zymomonas genus, this subspecies demonstrates a unique metabolic pathway distinct from that of many other fermentative bacteria, utilizing the Entner-Doudoroff pathway for sugar catabolism. This metabolic efficiency allows Z. mobilis to thrive in various sugar-rich environments, particularly in plant-based substrates, where it may contribute to the breakdown of biomass. ↵↵In terms of growth conditions, Zymomonas mobilis can adapt to both aerobic and anaerobic settings, enabling it to occupy diverse ecological niches. Its facultative nature suggests a potential role in fluctuating environments where oxygen levels can vary, allowing it to maintain metabolic activity and compete effectively with other microbial communities. The unique combination of its metabolic capabilities and adaptability positions Zymomonas mobilis as a significant player in fermentation ecology, particularly in environments rich in fermentable sugars." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Zymomonadaceae Zymomonas Zymomonas mobilis Negative Rod Yes 1 2 Facultative Mesophilic Free living Pairs 1194424 NZ_CP003711.1 Bac0005138 Rhodococcus wratislaviensis IFP 2016 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus wratislaviensis 1195242 ANIU00000000.1 Bac0005139 Porphyromonas gingivalis JCVI SC001 "Porphyromonas gingivalis JCVI SC001 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is primarily associated with host habitats, indicating its reliance on specific host interactions for survival and proliferation. ↵↵As an anaerobe, P. gingivalis JCVI SC001 occupies environments where oxygen is limited, which often includes the oral cavity where it is commonly found. Its rod shape and anaerobic metabolic requirements suggest a specialized adaptation to the nutrient-rich yet oxygen-depleted niches within host organisms. ↵↵While the specific pathogenicity or ecological roles of this strain are not detailed, its habitat association implies that it may play a role in the complex microbiota of the host, possibly influencing oral health and disease dynamics. Understanding the traits of P. gingivalis JCVI SC001 can provide insights into its biological significance, particularly in relation to its interactions within the microbial ecosystem of the host." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1195243 APMB00000000.1 Bac0005140 Gallibacterium anatis 12656/12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis 1195244 AVOX00000000.1 Bac0005141 Alishewanella agri BL06 "Alishewanella agri BL06 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements and optimal growth temperature of 29.0°C. This organism belongs to the genus Alishewanella, which is known for its diverse metabolic capabilities, particularly in environments with varying oxygen levels. ↵↵The Gram-negative nature of A. agri BL06 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. Its rod shape is typical of many bacteria and may play a role in its motility and colonization abilities within its habitat.↵↵The optimal growth temperature of 29.0°C indicates that A. agri BL06 is likely adapted to temperate environments, which may include soil or aquatic systems where temperatures fluctuate around this range. This adaptability could allow it to thrive in various ecological niches, potentially contributing to biogeochemical processes or interactions with other microbial communities.↵↵Given its aerobic nature, A. agri BL06 likely plays a role in the degradation of organic matter in oxygen-rich environments, which may have implications for nutrient cycling. Its metabolic activities may also influence the community structure of microorganisms in its habitat, highlighting its potential significance in ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alishewanella Alishewanella agri Gram-negative rod non-motile aerobic 29 mesophilic 1195246 AKKU00000000.1 Bac0005142 Bacillus toyonensis biovar Thuringiensis MC28 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 1195464 NC_018687.1 Bac0005143 Xanthomonas graminis pv. arrhenatheri LMG 727 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas graminis 1195923 CXOI00000000.1 Bac0005144 Rubrivirga marina str. SAORIC-28 Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga marina 1196024 MQWD00000000.1 Bac0005145 Cytobacillus oceanisediminis 2691 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus oceanisediminis 1196031 NZ_CP015506.1 Bac0005146 Snodgrassella alvi Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella alvi 1196083 NAHJ00000000.1 Bac0005147 Snodgrassella communis Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella communis 1196083 MEIQ00000000.1 Bac0005148 Snodgrassella communis str. wkB12 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella communis 1196083 JFZW00000000.1 Bac0005149 Gilliamella apicola Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella apicola 1196095 QGLR00000000.1 Bac0005150 Gilliamella apicola str. wkB30 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella apicola 1196095 JFZX00000000.1 Bac0005151 Clostridium sp. Maddingley MBC34-26 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. Maddingley MBC34-26 1196322 ALXI00000000.1 Bac0005152 Pseudomonas putida DOT-T1E "Pseudomonas putida DOT-T1E is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is a heterotroph, deriving its energy from organic compounds, and it is commonly found in soil and wastewater environments. As a facultative anaerobe, Pseudomonas putida DOT-T1E can adapt to varying oxygen levels, allowing it to thrive in both aerobic and anaerobic conditions.↵↵The metabolic versatility of Pseudomonas putida DOT-T1E is a key characteristic that enables it to exploit a wide range of organic substrates, making it particularly valuable in bioremediation efforts. This adaptability allows the bacterium to play a significant role in the degradation of pollutants in contaminated environments, thereby contributing to ecological balance and sustainability. Its presence in wastewater treatment systems highlights its potential for applications in environmental microbiology, particularly in the biotransformation of hazardous compounds. The ability of Pseudomonas putida DOT-T1E to survive and function effectively in diverse habitats underscores its significance in microbial ecology and its potential utility in biotechnological applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 1196325 NC_018220.1 Bac0005153 Stutzerimonas stutzeri CCUG 29243 "Stutzerimonas stutzeri CCUG 29243 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, which is consistent with its habitat being host-associated. This species requires oxygen for growth, categorizing it as an aerobe. ↵↵The characteristics of S. stutzeri CCUG 29243 suggest that it may play a role in the complex interactions within host-associated microbiomes, potentially contributing to nutrient cycling or influencing host physiology. Further studies could provide insights into its specific functions within these environments, particularly in relation to its heterotrophic metabolism and its aerobic lifestyle, which may reflect adaptations to the dynamic conditions found within host systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 1196835 NC_018028.1 Bac0005154 Salmonella bongori N268-08 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella bongori 1197719 NC_021870.1 Bac0005155 Thermoplasmatales archaeon SCGC AB-539-N05 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon SCGC AB-539-N05 1198116 ALXL00000000.1 Bac0005156 Cycloclasticus zancles 78-ME Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus zancles 1198232 NC_021917.1 Bac0005157 Pseudomonas viridiflava ICMP 13104 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viridiflava 1198305 LKEJ00000000.1 Bac0005158 Pseudomonas fluorescens ICMP 11288 "Pseudomonas fluorescens ICMP 11288 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, deriving its energy from organic compounds in its environment. P. fluorescens ICMP 11288 thrives optimally at a temperature of 25.0°C, indicating its adaptability to moderate environmental conditions. As an aerobe, this bacterium requires oxygen for its metabolic processes, positioning it within ecosystems where oxygen is readily available.↵↵The habitat of Pseudomonas fluorescens ICMP 11288 is diverse, suggesting a broad ecological niche. This adaptability may confer advantages in various environments, potentially facilitating its role in nutrient cycling and organic matter degradation. The presence of P. fluorescens in multiple habitats emphasizes its ecological versatility and underscores the importance of studying its metabolic capabilities, which can have implications for bioremediation and agricultural applications. Understanding the specific conditions that favor the growth and metabolic functions of this strain could provide insights into its ecological interactions and contributions to microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1198309 LKEF00000000.1 Bac0005159 Aeropyrum camini SY1 = JCM 12091 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Aeropyrum Aeropyrum camini 1198449 NC_022521.1 Bac0005160 Janthinobacterium sp. HH01 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. HH01 1198452 AMWD00000000.1 Bac0005161 Falsiruegeria litorea R37 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Falsiruegeria Falsiruegeria litorea 1200284 FWFO00000000.1 Bac0005162 Helicobacter pylori UMB_G1 "Helicobacter pylori UMB_G1 is a Gram-negative, spiral-shaped bacterium that typically exists as single cells and exhibits microaerophilic oxygen requirements. This organism thrives optimally at a temperature of 37.0 °C, aligning with the physiological conditions found in the gastric environment of hosts, where it is primarily associated. ↵↵The microaerophilic nature of H. pylori UMB_G1 indicates its adaptation to low oxygen concentrations, a characteristic that facilitates its survival and metabolic processes in the stomach, a niche that frequently presents fluctuating oxygen levels. As a host-associated microbe, H. pylori UMB_G1 likely interacts closely with gastric mucosal surfaces, potentially influencing local microenvironments and impacting host microbiota composition.↵↵Given its specific habitat and physiological requirements, H. pylori UMB_G1 may play a significant role in the microbial ecology of the gastric niche, which could have implications for understanding microbial interactions within this environment. The unique adaptation strategies of H. pylori UMB_G1 in response to its microaerophilic conditions highlight the evolutionary pressures faced by bacteria inhabiting host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1200324 AOTV00000000.1 Bac0005163 Corynebacterium terpenotabidum Y-11 "Corynebacterium terpenotabidum Y-11 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and is classified as non-spore-forming. This microbe is part of the diverse genus Corynebacterium, which is known for its complex cell wall structure and distinctive morphological characteristics. The Gram-positive nature of C. terpenotabidum Y-11 indicates the presence of a thick peptidoglycan layer, which is typical of this group and contributes to its structural integrity and resistance to certain environmental stresses.↵↵As an aerobic organism, C. terpenotabidum Y-11 relies on oxygen for its energy production, which may influence its habitat preferences and ecological interactions. The absence of sporulation suggests that this bacterium may rely on other survival strategies to withstand adverse conditions, such as forming biofilms or utilizing specific metabolic pathways to cope with nutrient availability.↵↵The traits of C. terpenotabidum Y-11 suggest potential roles in biogeochemical cycles, particularly in environments where organic matter decomposition occurs, as its aerobic metabolism may facilitate the breakdown of complex organic compounds. Understanding the ecological niches occupied by this bacterium can provide insights into its contributions to microbial community dynamics and nutrient cycling in various habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium terpenotabidum Gram-positive rod non-motile aerobic non-spore-forming 1200352 NC_021663.1 Bac0005164 Streptococcus salivarius K12 "Streptococcus salivarius K12 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. As a facultative anaerobe, this bacterium can thrive in both aerobic and anaerobic environments, making it well-adapted to the diverse conditions found in its host-associated habitats. ↵↵This strain is part of the oral microbiota and is commonly found in the human mouth, where it plays a role in maintaining a balanced microbial ecosystem. The presence of S. salivarius K12 in the oral cavity suggests its potential involvement in oral health, as it may contribute to the prevention of colonization by pathogenic microorganisms. Furthermore, its ability to exist in both oxygen-rich and oxygen-poor environments highlights its versatility in adapting to the fluctuating conditions within the host's oral cavity.↵↵Overall, Streptococcus salivarius K12 exemplifies the complex dynamics of microbial communities in host-associated environments, where its interactions may influence both the health and the stability of the oral microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1200793 ALIF00000000.1 Bac0005165 Methanoculleus bourgensis MS2 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus bourgensis 1201294 NC_018227.2 Bac0005166 Enterobacter sp. Ag1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. Ag1 1202448 AKXM00000000.1 Bac0005167 Flavobacterium sp. F52 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. F52 1202532 AKZQ00000000.1 Bac0005168 Niallia nealsonii AAU1 "Niallia nealsonii AAU1 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic growth, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This adaptability may confer ecological advantages, enabling the organism to inhabit diverse niches where fluctuations in oxygen availability occur. The rod shape of Niallia nealsonii AAU1 is characteristic of many bacteria within its domain, facilitating motility and interaction with its environment.↵↵The facultative anaerobic nature of Niallia nealsonii AAU1 suggests a metabolic flexibility that could play a role in its survival and competitive strategies within microbial communities. This trait enables the microbe to switch between aerobic and anaerobic respiration, depending on the availability of oxygen, which may enhance its ability to utilize various carbon sources for growth. Such metabolic versatility is often observed in microbes that inhabit dynamic ecosystems, where environmental conditions can change rapidly.↵↵Further studies may elucidate the specific metabolic pathways employed by Niallia nealsonii AAU1, as well as its interactions with other microorganisms in its habitat. Understanding these aspects could provide insights into its ecological role and potential applications in biotechnological processes. The ability of Niallia nealsonii AAU1 to thrive in variable oxygen conditions positions it as a potentially significant player in the microbial ecology of environments subjected to fluctuating redox states." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Niallia Niallia nealsonii Positive Rod Facultative anaerobe 1202533 ASRU00000000.1 Bac0005169 Flavobacterium akiainvivens str. IK-1 "Flavobacterium akiainvivens str. IK-1 is a Gram-negative, rod-shaped bacterium that is part of the diverse genus Flavobacterium, known for its ecological significance in various environments. This strain exhibits the characteristic features of Gram-negative bacteria, including a thin peptidoglycan layer surrounded by an outer membrane, which may play a role in its interaction with the environment and other organisms. ↵↵The rod shape of Flavobacterium akiainvivens str. IK-1 is typical of many members in the Flavobacteriaceae family, contributing to its motility and adaptability in aquatic habitats. Although specific metabolic capabilities or ecological roles are not detailed in the provided information, members of the Flavobacterium genus are often involved in the degradation of organic matter, suggesting that strain IK-1 may play a role in nutrient cycling in its native habitat. ↵↵Further research into Flavobacterium akiainvivens str. IK-1 could elucidate its interactions within microbial communities and its potential applications in bioremediation or wastewater treatment, reinforcing the importance of Gram-negative, rod-shaped bacteria in environmental microbiology. These characteristics underscore the ecological importance of Flavobacterium species in maintaining the health and stability of aquatic ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium akiainvivens Gram-negative rod non-motile 1202724 LIYD00000000.1 Bac0005170 Natrinema salifodinae Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema salifodinae 1202768 FOIS00000000.1 Bac0005171 Methylacidiphilum kamchatkense Kam1 Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Methylacidiphilum kamchatkense 1202785 JQNX00000000.1 Bac0005172 Lacticaseibacillus rhamnosus LRHMDP2 "Lacticaseibacillus rhamnosus LRHMDP2 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic respiration, allowing it to thrive in diverse environments. This species is part of the lactic acid bacteria group, which is known for its role in fermentation processes and the production of lactic acid. Lacticaseibacillus rhamnosus LRHMDP2 is found in multiple habitats, indicating its versatile adaptability to varying ecological niches.↵↵The facultative anaerobic nature of L. rhamnosus LRHMDP2 enables it to metabolize nutrients both in the presence and absence of oxygen, which may contribute to its survival in varied environments, such as the gastrointestinal tract of humans and animals, as well as in fermented food products. This adaptability may also play a role in its interactions with other microbial species within complex communities, potentially influencing microbial dynamics and nutrient cycling.↵↵The presence of Lacticaseibacillus rhamnosus LRHMDP2 in diverse habitats underscores its ecological significance and suggests potential applications in food production, probiotics, and fermentation technologies. Further exploration of its metabolic pathways and interactions within microbial ecosystems may reveal additional benefits or functions that contribute to its ecological roles." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1203258 AMQW00000000.1 Bac0005173 Bifidobacterium breve HPH0326 "Bifidobacterium breve HPH0326 is a gram-positive, rod-shaped bacterium classified as a mesophile, thriving optimally at moderate temperatures, and is a heterotrophic organism, deriving its energy from complex organic compounds. This microbe is identified primarily in the gastrointestinal tracts of humans and various mammals, particularly in the intestines of infants and young children, and can also be found in other body sites such as the oral cavity and occasionally in the urogenital tract. As a member of the Bifidobacterium genus, B. breve HPH0326 is an obligate anaerobe, meaning it cannot survive in the presence of oxygen and instead flourishes in low-oxygen environments typical of the gut. This characteristic is pivotal for its ecological niche, where it plays a crucial role in the maintenance of gut health by promoting a balanced microbiota and aiding in digestion. The heterotrophic nature of B. breve HPH0326 enables it to utilize various carbohydrates, including dietary fibers and oligosaccharides, which it ferments to produce short-chain fatty acids (SCFAs). These SCFAs serve essential functions, including providing energy to colonic cells, enhancing gut barrier integrity, and exhibiting anti-inflammatory properties. Furthermore, Bifidobacterium breve HPH0326 has garnered attention for its potential probiotic benefits, including the modulation of gut microbiota composition and the relief of gastrointestinal disorders. Its ability to produce antimicrobial substances adds to its protective role against pathogenic bacteria, offering a natural method to improve intestinal health. Current research is exploring its therapeutic applications in areas like immune modulation and the prevention of allergic conditions, highlighting its significance in both health and disease management." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe 1203540 ATCB00000000.1 Bac0005174 Microbacterium sp. oral taxon 186 str. F0373 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. oral taxon 186 1203549 ATCC00000000.1 Bac0005175 Corynebacterium sp. KPL1821 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. KPL1821 1203560 AXLZ00000000.1 Bac0005176 Propionibacterium sp. HGH0353 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. HGH0353 1203571 ATFM00000000.1 Bac0005177 Propionibacterium sp. KPL1838 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL1838 1203572 AXMN00000000.1 Bac0005178 Propionibacterium sp. KPL1844 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL1844 1203573 AXMM00000000.1 Bac0005179 Propionibacterium sp. KPL1849 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL1849 1203575 AXMK00000000.1 Bac0005180 Propionibacterium sp. KPL1852 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL1852 1203576 AXMJ00000000.1 Bac0005181 Streptomyces albus "Streptomyces albus is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its ecological role in soil and its ability to produce a diverse array of bioactive compounds. Members of this genus are known for their filamentous growth form, which contributes to their ability to decompose organic matter and recycle nutrients in terrestrial environments. ↵↵The distinctive Gram-positive cell wall structure of S. albus, characterized by a thick peptidoglycan layer, is indicative of its resilience in various environmental conditions. This trait is essential for maintaining cellular integrity and protecting the bacterium from external stressors. S. albus is part of a group of microbes that are critical players in the biosynthesis of antibiotics, which underscores its potential biotechnological applications in medicine and agriculture.↵↵Furthermore, S. albus serves as a model organism for studying secondary metabolism, particularly in the production of secondary metabolites that can have pharmaceutical significance. Its ability to synthesize these compounds highlights the intricate metabolic pathways and regulatory mechanisms that govern secondary metabolite production in actinobacteria. ↵↵Overall, the ecological role of Streptomyces albus extends beyond mere decomposition; it actively contributes to the microbial diversity and metabolic complexity of soil ecosystems, which is vital for maintaining ecological balance and supporting plant health." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albus Positive 1203592 ATCE00000000.1 Bac0005182 Veillonella sp. HPA0037 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. HPA0037 1203593 ATCG00000000.1 Bac0005183 Capnocytophaga sp. oral taxon 336 str. F0502 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 336 1203603 ATCI00000000.1 Bac0005184 Propionibacterium sp. oral taxon 192 str. F0372 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. oral taxon 192 1203605 ATFL00000000.1 Bac0005185 Corynebacterium sp. KPL1989 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. KPL1989 1203622 AXLR00000000.1 Bac0005186 Propionibacterium sp. KPL2000 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL2000 1203629 AXMH00000000.1 Bac0005187 Methanobacterium formicicum DSM 3637 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum 1204725 AMPO00000000.1 Bac0005188 Pseudomonas fluorescens BRIP34879 "Pseudomonas fluorescens BRIP34879 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. It thrives optimally at a temperature of 25.0 °C and is classified as an aerobic heterotroph, utilizing organic compounds as its energy source. This strain exhibits a wide habitat range, suggesting its adaptability to various environments where organic matter is present.↵↵As an aerobe, Pseudomonas fluorescens BRIP34879 relies on oxygen for its metabolic processes, which positions it within ecosystems where oxygen is readily available. Its ability to metabolize diverse organic substrates allows it to play a significant role in nutrient cycling, particularly in environments rich in organic material.↵↵The ecological versatility of Pseudomonas fluorescens BRIP34879, along with its aerobic and heterotrophic lifestyle, highlights its potential contribution to bioremediation processes, particularly in the degradation of pollutants in oxygenated environments. This adaptability not only underscores the importance of this bacterium in ecological dynamics but also suggests its utility in various biotechnological applications, including soil health enhancement and waste management strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1205750 AMZW00000000.1 Bac0005189 Jatrophihabitans endophyticus "Jatrophihabitans endophyticus is a Gram-positive, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0 °C. This non-spore-forming microbe is characterized by its robust cellular structure, typical of Gram-positive organisms, which may contribute to its resilience in various environments. ↵↵The specific environmental niches and potential associations of J. endophyticus with host plants remain to be thoroughly investigated; however, its classification as an endophyte suggests a likely symbiotic relationship with plants, potentially contributing to the plant's nutrient uptake or stress resilience. Understanding the ecological role of J. endophyticus within its host could provide insights into its functional contributions to plant health and growth, particularly in the context of sustainable agricultural practices. Such interactions may highlight the importance of endophytic bacteria in enhancing plant resilience against biotic and abiotic stresses." Bacillati Actinomycetota Actinomycetes Jatrophihabitantales Jatrophihabitantaceae Jatrophihabitans Jatrophihabitans endophyticus Gram-positive rod non-motile aerobic 25 mesophilic non-spore-forming 1206085 FQVU00000000.1 Bac0005190 Maribacter spongiicola str. DSM 25233 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter spongiicola 1206753 SOAY00000000.1 Bac0005191 Pseudomonas sp. Lz4W Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Lz4W 1206777 NZ_CP017432.1 Bac0005192 Paenibacillus alvei DSM 29 "Paenibacillus alvei DSM 29 is a bacterium that thrives in temperatures ranging from mesophilic to thermophilic, categorizing it as a thermophilic microbe (Temperature preference category: Thermophiles). This thermophilic characteristic enables it to inhabit environments that are too hot for most other microorganisms. As a chemoheterotroph, Paenibacillus alvei DSM 29 derives its energy from the breakdown of organic compounds, utilizing a variety of carbon sources for growth. This microbe produces energy through fermentation, a process that does not involve the use of oxygen. Paenibacillus alvei DSM 29 is a Gram-positive bacterium, meaning that its cell wall contains a thick layer of peptidoglycan, which is responsible for its characteristic Gram stain. The bacterium's shape is rod-like, with a typical length of 2-3 μm and a width of 0.5-0.7 μm. Paenibacillus alvei DSM 29 is capable of inhabiting various body sites, including the oral cavity, skin, and respiratory and gastrointestinal tracts. However, it is not commonly associated with disease, as it is typically found as part of the normal commensal flora. As an obligate anaerobe, Paenibacillus alvei DSM 29 requires a low-oxygen environment to survive, making it well-suited to environments where oxygen levels are limited. In addition to its unique characteristics, Paenibacillus alvei DSM 29 has been found to produce a variety of enzymes, including proteases, lipases, and amylases, which are involved in the breakdown of complex nutrients. These enzymes play a crucial role in the microbe's ability to thrive in diverse environments, from soil to human gut. Furthermore, research has demonstrated that Paenibacillus alvei DSM 29 has the potential to degrade a range of pollutants, including heavy metals and pesticides, rendering it a valuable candidate for bioremediation applications. Its ability to produce antibiotics and other bioactive compounds has also sparked interest in its potential use as a probiotic or antimicrobial agent." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus alvei Variable Rod Facultative anaerobe 1206781 NZ_AMBZ01000025.1 Bac0005193 Sphingobium sp. C100 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. C100 1207055 AYOY00000000.1 Bac0005194 Pseudomonas sp. UW4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. UW4 rhizosphere of common reeds 1207075 NC_019670.1 Bac0005195 Burkholderia pseudomultivorans Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomultivorans aerobic 1207504 LPJR00000000.1 Bac0005196 Bifidobacterium bifidum LMG 13195 str. JCM 7004 "Bifidobacterium bifidum LMG 13195 str. JCM 7004 is a Gram-positive, nonsporulating rod-shaped bacterium classified as an anaerobe, primarily associated with host environments. This species is part of the Bifidobacterium genus, which is known for its beneficial role in the gut microbiota of mammals, particularly in human infants. The host-associated habitat suggests that B. bifidum plays a significant role in the intestinal ecosystem, potentially contributing to the maintenance of gut health through various mechanisms, including modulation of the immune response and fermentation of dietary fibers.↵↵As an anaerobic organism, B. bifidum thrives in environments devoid of oxygen, which aligns with its habitat within the gastrointestinal tract where oxygen levels are minimal. This adaptation may allow the bacterium to effectively compete with other gut microbes and to fulfill its ecological niche by utilizing substrates that are less accessible to aerobic organisms.↵↵Bifidobacterium bifidum LMG 13195 str. JCM 7004 serves as a model organism for studying the symbiotic relationships between gut microbiota and their hosts, particularly in understanding how these microbial communities influence host metabolism and immune function. The specific traits of this strain underscore its potential importance in probiotic applications and highlight the complex interactions occurring within the gastrointestinal microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1207542 AP018131.1 Bac0005197 Aeromonas media WS "Aeromonas media WS is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, primarily categorized as a facultative anaerobe and exhibiting chemotrophic metabolism. This microbe plays a significant role in aquatic environments, often found in freshwater habitats, including rivers and lakes, as well as in the gastrointestinal tract of various animals. The Gram-negative nature of Aeromonas media WS indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, which can contribute to its pathogenicity and resistance to certain antibiotics. Being rod-shaped allows it to exhibit motility through flagella, facilitating its movement within diverse aquatic ecosystems and enhancing its ability to colonize hosts. As a mesophilic organism, it optimally grows at moderate temperatures, generally between 20°C and 37°C, allowing it to thrive in temperate environments. As a facultative anaerobe, Aeromonas media WS has the metabolic flexibility to utilize both aerobic respiration and fermentation pathways, enabling it to survive in fluctuating oxygen levels. This versatility is crucial for its survival in various habitats, including low-oxygen niches. The chemotrophic metabolism allows it to derive energy from organic compounds present in the environment, contributing to its role in nutrient cycling. Aeromonas media WS has been implicated in waterborne diseases, particularly gastroenteritis in humans and aquatic animals, showcasing its potential as a pathogen in certain contexts. Additionally, it is of interest in bioremediation studies due to its ability to degrade pollutants in aquatic ecosystems, highlighting its ecological importance." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas media Negative rod non-motile Facultative anaerobe organotroph; chemotroph 1208104 NZ_CP007568.1 Bac0005198 Thalassolituus oleivorans R6-15 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Thalassolituus Thalassolituus oleivorans 1208320 NZ_CP006829.1 Bac0005199 Marinomonas profundimaris str. D104 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas profundimaris 1208321 AYOZ00000000.1 Bac0005200 Celeribacter baekdonensis B30 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter baekdonensis 1208323 AMRK00000000.1 Bac0005201 Celeribacter indicus str. P73 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter indicus 1208324 NZ_CP004398.1 Bac0005202 Sphingobium fuliginis ATCC 27551 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium fuliginis 1208342 NZ_CP041016.1 Bac0005203 Commensalibacter papalotli Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Commensalibacter Commensalibacter papalotli (ex Servín-Garcidueñas et al. 2014) 1208583 ATSX00000000.1 Bac0005204 Candidatus Kinetoplastidibacterium crithidiae TCC036E Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Kinetoplastidibacterium Candidatus Kinetoplastidibacterium crithidiae 1208918 NC_020283.1 Bac0005205 Candidatus Kinetoplastidibacterium blastocrithidiae TCC012E Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Kinetoplastidibacterium Candidatus Kinetoplastidibacterium blastocrithidiae 1208922 NC_020285.1 Bac0005206 Mycolicibacterium mageritense DSM 44476 = CIP 104973 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium mageritense 1209984 CCBF000000000.1 Bac0005207 Tepidanaerobacter acetatoxydans Re1 Bacillati Bacillota Clostridia Thermosediminibacterales Tepidanaerobacteraceae Tepidanaerobacter Tepidanaerobacter acetatoxydans 1209989 NC_019954.2 Bac0005208 Porphyromonas gingivalis SJD2 "Porphyromonas gingivalis SJD2 is a nonsporulating, Gram-negative bacterium characterized by its rod-shaped morphology and strict anaerobic metabolism. This microbe thrives at an optimal temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As an anaerobe, P. gingivalis SJD2 relies on environments devoid of oxygen for its survival and growth, a trait consistent with its role in the oral microbiome.↵↵The association of P. gingivalis with host tissues suggests it may play a significant role in the microbial ecology of the oral cavity, where it can influence local microbial communities and potentially interact with other microorganisms. Understanding the specific environmental conditions that support the growth of this strain, particularly its anaerobic nature and thermal preferences, could provide insight into its ecological niche within the host and its potential contributions to oral health or disease dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1211023 ASYL00000000.1 Bac0005209 Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Ureibacillus Ureibacillus massiliensis 1211035 JPVQ00000000.1 Bac0005210 Stutzerimonas kunmingensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas kunmingensis 1211807 POUV00000000.1 Bac0005211 Legionella drozanskii LLAP-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella drozanskii 1212489 LNXY00000000.1 Bac0005212 Mycobacterium sp. ENV421 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ENV421 1213407 PDHO00000000.1 Bac0005213 Actinocrispum wychmicini str. DSM 45934 "Actinocrispum wychmicini strain DSM 45934 is a Gram-positive, non-spore-forming bacterium that exhibits aerobic respiration. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. The Gram-positive nature of A. wychmicini suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in aerobic environments.↵↵As an aerobic organism, A. wychmicini likely relies on oxygen for its metabolic processes, which may influence its habitat and interactions within microbial communities. The absence of sporulation in this strain implies that it may have alternative survival strategies in response to environmental stressors, potentially relying on metabolic flexibility or other mechanisms of resilience.↵↵The specific growth conditions and metabolic requirements of Actinocrispum wychmicini str. DSM 45934 highlight its potential role in nutrient cycling within its ecological niche. Understanding its physiological traits can provide insights into its interactions with other microorganisms and its contributions to the microbial diversity in its habitat. Further investigation into the ecological roles of A. wychmicini may reveal its significance in biogeochemical processes, particularly in environments where aerobic conditions prevail." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinocrispum Actinocrispum wychmicini Gram-positive non-motile aerobic 25 mesophilic non-spore-forming 1213861 SLWS00000000.1 Bac0005214 Streptococcus suis 6407 "Streptococcus suis 6407 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains, pairs, or as single cells. This bacterium thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in warm-blooded hosts. Streptococcus suis 6407 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, thereby enhancing its adaptability to various ecological niches.↵↵The habitat of S. suis 6407 is described as specialized, suggesting that it occupies specific environments potentially associated with its host species or particular ecological interactions. While the precise nature of its habitat is not detailed, the preference for specialized conditions may imply a dependency on certain biological or environmental factors for optimal growth and survival.↵↵Given its unique morphological characteristics and metabolic flexibility, S. suis 6407 may play an important role in microbial communities where it resides, potentially influencing microbial dynamics and interactions. Understanding the ecological implications of its specialized habitat can provide insights into its role in host-associated microbiomes, contributing to the broader understanding of microbial ecology and the interactions between host organisms and their associated microbial populations." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1214179 NZ_CP008921.1 Bac0005215 Acidocella sp. MX-AZ02 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidocella Acidocella sp. MX-AZ02 1214225 AMPS00000000.1 Bac0005216 Paenirhodobacter ferrireducens Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paenirhodobacter Paenirhodobacter ferrireducens 1215032 SAVB00000000.1 Bac0005217 Pseudomonas putida S12 "Pseudomonas putida S12 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microorganism is classified as a heterotroph, utilizing organic compounds as its energy source, which allows it to thrive in diverse environments, particularly in soil and wastewater habitats. Pseudomonas putida S12 is facultatively anaerobic, meaning it can adapt to both aerobic and anaerobic conditions, thereby enhancing its survival in fluctuating environmental oxygen levels.↵↵The versatility of Pseudomonas putida S12 in utilizing various organic substrates makes it a key player in biogeochemical cycles, particularly in the degradation of pollutants in contaminated environments. Its ability to adapt to different oxygen conditions further supports its role in wastewater treatment processes, where oxygen availability can vary significantly. This adaptability not only highlights the ecological importance of Pseudomonas putida S12 in environmental microbiology but also suggests potential applications in bioremediation strategies aimed at mitigating pollution in soil and aquatic systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 1215087 NZ_CP009975.1 Bac0005218 Pseudomonas putida HB3267 "Pseudomonas putida HB3267 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotroph, indicating its reliance on organic compounds as an energy source. P. putida HB3267 is notably found in soil and wastewater environments, where it plays a role in the degradation of organic materials. Its facultative nature allows it to thrive in both aerobic and anaerobic conditions, enhancing its adaptability to diverse ecological niches.↵↵The ability of P. putida HB3267 to utilize a variety of organic substrates positions it as a significant player in bioremediation processes, particularly in environments contaminated with organic pollutants. The strain's metabolic versatility may contribute to its role in nutrient cycling within its natural habitat, promoting soil health and ecosystem sustainability. Furthermore, its presence in wastewater treatment systems suggests potential applications in biotechnological processes aimed at waste minimization and resource recovery. Understanding the functional capabilities of Pseudomonas putida HB3267 can provide insights into its ecological significance and potential industrial applications in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 1215088 NC_019905.1 Bac0005219 Planococcus halocryophilus str. DSM 24743 "Planococcus halocryophilus str. DSM 24743 is a Gram-positive, spherical bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This microbe is notable for its non-spore-forming nature, distinguishing it from many other bacterial species that utilize sporulation as a survival strategy in adverse environments. ↵↵As a member of the genus Planococcus, this strain displays traits that suggest an adaptation to specific ecological niches, potentially including extreme environments, although specific ecological interactions and niches are not detailed in the current data. The spherical morphology of Planococcus halocryophilus str. DSM 24743 may confer advantages in certain growth conditions, such as facilitating nutrient uptake or enhancing resistance to physical stresses. ↵↵The aerobic requirement of this strain suggests its role in environments where oxygen is present, implying potential interactions with other microorganisms and contributions to biogeochemical cycles, particularly in marine or polar ecosystems where such conditions may prevail. Further research could illuminate the ecological significance of Planococcus halocryophilus str. DSM 24743 in these habitats, particularly its potential roles in nutrient cycling and microbial community dynamics." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus halocryophilus Gram-positive sphere aerobic 25 mesophilic non-spore-forming 1215089 NZ_CP016537.2 Bac0005220 Pseudolactococcus raffinolactis 4877 "Pseudolactococcus raffinolactis 4877 is a Gram-positive, facultative anaerobic coccus characterized by its spherical shape. As a member of the Lactococcus genus, it exhibits metabolic versatility, enabling it to thrive in both aerobic and anaerobic environments. This adaptability may contribute to its potential utility in various fermentation processes, particularly in dairy production, where similar lactic acid bacteria play a crucial role in the development of flavor and texture in fermented products.↵↵The Gram-positive nature of P. raffinolactis 4877 suggests the presence of a thick peptidoglycan layer, which is a hallmark of many lactic acid bacteria, providing structural support and protection against environmental stressors. This structural characteristic may also influence its interactions within microbial communities, especially in environments rich in carbohydrates, where it may compete effectively with other microbial populations.↵↵Additionally, the facultative anaerobic metabolism of P. raffinolactococcus raffinolactis 4877 allows it to occupy a range of ecological niches, potentially including environments with fluctuating oxygen levels. This flexibility may enhance its resilience and functional contributions to microbial ecosystems, particularly in fermentation settings where oxygen availability can vary dramatically.↵↵Overall, Pseudolactococcus raffinolactis 4877 exemplifies the ecological versatility of lactic acid bacteria and highlights the importance of microbial adaptability in maintaining the dynamic balance of microbial communities in various habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus raffinolactis Positive Cocci Facultative anaerobe 1215915 CALL00000000.1 Bac0005221 Fusobacterium hwasookii ChDC F128 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii 1216362 ALVD00000000.1 Bac0005222 Acinetobacter baumannii NIPH 201 "Acinetobacter baumannii NIPH 201 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and demonstrates a heterotrophic, chemoheterotrophic mode of energy acquisition. This organism thrives optimally at a temperature of 37.0°C and is classified as an aerobic microbe, indicating that it requires oxygen for growth. ↵↵The versatility of A. baumannii NIPH 201 is highlighted by its ability to inhabit a wide range of environments, suggesting a potential for adaptability to various niches. The presence of this bacterium in multiple habitats may reflect its resilience and capacity to survive under diverse conditions, which is characteristic of the Acinetobacter genus. Understanding the ecological role and metabolic capabilities of A. baumannii NIPH 201 could provide insights into its interactions within microbial communities and its responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1217630 APQV00000000.1 Bac0005223 Acinetobacter baumannii NIPH 410 "Acinetobacter baumannii NIPH 410 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is a chemoheterotroph, relying on organic compounds for energy, and it thrives optimally at temperatures around 37.0°C, which coincides with the average human body temperature. A. baumannii NIPH 410 is classified as an aerobe, indicating its requirement for oxygen in metabolic processes.↵↵The bacterium is known to inhabit diverse environments, suggesting a versatile ecological niche. Its ability to adapt to various substrates and conditions may contribute to its survival in both natural and artificial habitats. This adaptability could also be linked to its resilience in challenging environments, often found in clinical settings, where it can persist on surfaces or in biofilms.↵↵Overall, the ecological versatility of A. baumannii NIPH 410, combined with its specific metabolic requirements, highlights the importance of understanding its environmental interactions and potential implications for microbial ecology and public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1217634 ATGJ00000000.1 Bac0005224 Acinetobacter beijerinckii CIP 110307 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter beijerinckii 1217648 APQL00000000.1 Bac0005225 Acinetobacter beijerinckii ANC 3835 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter beijerinckii 1217649 APQK00000000.1 Bac0005226 Acinetobacter bereziniae NIPH 3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bereziniae 1217651 APPK00000000.1 Bac0005227 Acinetobacter guillouiae CIP 63.46 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter guillouiae 1217655 APOS00000000.1 Bac0005228 Acinetobacter guillouiae NIPH 991 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter guillouiae 1217656 APPJ00000000.1 Bac0005229 Acinetobacter haemolyticus CIP 64.3 = MTCC 9819 "Acinetobacter haemolyticus CIP 64.3, also designated as MTCC 9819, is a Gram-negative bacterium characterized by its aerobic metabolism. This strain is part of the diverse genus Acinetobacter, which is known for its environmental resilience and ability to thrive in various ecological niches. As an aerobe, A. haemolyticus requires oxygen for growth, which influences its habitat preferences and interactions within microbial communities.↵↵The Gram-negative cell wall structure of A. haemolyticus contributes to its unique physiological properties, including permeability to certain substances and resistance mechanisms that can be significant in various contexts, although specific resistance traits were not provided in the data. Its classification within the Acinetobacter genus aligns it with other species that exhibit a wide range of biochemical characteristics and adaptability.↵↵Given the environmental versatility of Acinetobacter species, A. haemolyticus may play a role in nutrient cycling and soil health, although direct ecological interactions were not detailed in the available data. The presence of this bacterium in various environments suggests potential implications for microbial ecology, particularly in understanding its interactions with other microorganisms and its contribution to ecosystem dynamics. This adaptability underscores the importance of studying A. haemolyticus within broader ecological frameworks, especially regarding its role in aerobic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 1217659 APQQ00000000.1 Bac0005230 Acinetobacter junii CIP 107470 = MTCC 11364 "Acinetobacter junii CIP 107470 (also designated as MTCC 11364) is a Gram-negative, aerobic bacterium characterized by its capacity to thrive in oxygen-rich environments. As part of the Acinetobacter genus, this species exhibits typical morphological and physiological traits associated with Gram-negative bacteria, including a cell envelope composed of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides.↵↵The aerobic nature of A. junii indicates its reliance on oxygen for metabolic processes, suggesting that it may play a role in environments where oxygen is readily available. This trait is particularly relevant in the context of various ecological niches, where A. junii may contribute to nutrient cycling and the degradation of organic matter. The ability to grow in aerobic conditions enhances its potential adaptability to diverse habitats, including soil and water ecosystems.↵↵Research into the metabolic capabilities of Acinetobacter species has revealed their importance in bioremediation, where they can utilize various organic compounds as carbon sources. This trait may extend to A. junii, suggesting that it could be involved in the degradation of pollutants in aerobic environments. Therefore, understanding the ecological roles of Acinetobacter junii, particularly in relation to its aerobic metabolism, could provide valuable insights into its function within microbial communities and its potential applications in environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 1217666 ASYZ00000000.1 Bac0005231 Acinetobacter lwoffii NIPH 478 "Acinetobacter lwoffii NIPH 478 is a Gram-negative bacterium characterized by its aerobic metabolism. This organism belongs to the genus Acinetobacter, which is known for its robust survival in various environments, including clinical settings. As an aerobe, A. lwoffii NIPH 478 requires oxygen for its growth and metabolic processes, indicating its potential role in environments where oxygen is readily available.↵↵The Gram-negative nature of A. lwoffii NIPH 478 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience against certain antibiotics and environmental stresses. This structural characteristic is common among many bacteria in the Acinetobacter genus, allowing them to thrive in diverse conditions.↵↵Moreover, A. lwoffii species, including NIPH 478, have been noted for their capacity to adapt to various ecological niches, which may include soil, water, and hospital environments. This adaptability can be associated with their metabolic versatility and potential interactions with other microorganisms in their habitat. Understanding the traits of A. lwoffii NIPH 478 may provide insights into its ecological roles and interactions within microbial communities, particularly in oxygen-rich environments where its aerobic nature can confer competitive advantages." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Aerobe 1217668 APQU00000000.1 Bac0005232 Acinetobacter lwoffii NIPH 715 "Acinetobacter lwoffii NIPH 715 is a Gram-negative bacterium characterized by its aerobic metabolic requirements. This species is part of the Acinetobacter genus, which is known for its environmental resilience and adaptability. A. lwoffii NIPH 715 thrives in oxygen-rich environments, indicating its reliance on aerobic respiration for energy production. ↵↵The Gram-negative nature of A. lwoffii NIPH 715 signifies that its cell wall structure is composed of a thin peptidoglycan layer surrounded by an outer membrane, typical of this group of bacteria. This structural feature often contributes to the organism's ability to survive in various environments, as it can be less susceptible to certain antimicrobial agents compared to Gram-positive bacteria. ↵↵Understanding the traits of A. lwoffii NIPH 715 is essential for comprehending its role within microbial communities. Its aerobic nature suggests that it may play a significant part in biogeochemical cycles, particularly in the degradation of organic matter in oxygen-rich habitats. Moreover, the adaptability of A. lwoffii NIPH 715 to diverse environmental conditions underscores the potential for further exploration of its ecological roles, particularly in nutrient cycling and interactions with other microbial species. Further research could illuminate the specific contributions of this bacterium to its ecosystem, enhancing our understanding of its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Aerobe 1217669 APOT00000000.1 Bac0005233 Acinetobacter parvus NIPH 1103 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter parvus 1217671 APOL00000000.1 Bac0005234 Acinetobacter radioresistens NIPH 2130 "Acinetobacter radioresistens NIPH 2130 is a mesophile, specifically a bacterium that thrives at moderate temperatures, and is categorized as a chemoheterotroph, utilizing organic compounds for energy and growth. This organism produces energy through aerobic respiration, is classified as Gram-negative, and exhibits a coccoid to short rod shape. It can be found in various body sites, particularly within human skin flora and the respiratory tract, and displays a preference for aerobic conditions, functioning optimally as a facultative anaerobe. As a mesophile, A. radioresistens NIPH 2130 adapts well to moderate temperatures, typically between 20°C and 45°C, which supports its survival and growth in diverse environments, including hospital settings. Its chemoheterotrophic metabolism allows it to utilize a plethora of organic substrates, making it versatile in nutrient-rich environments. The Gram-negative nature of this bacterium is characterized by its thin peptidoglycan layer and an outer membrane, which contributes to its resilience against certain antibiotics and environmental stressors. The coccoid to short rod shape of A. radioresistens is indicative of its adaptation to various niches, allowing it to colonize human tissues effectively. Its facultative anaerobic capability means that it can grow in both the presence and absence of oxygen, providing it with a survival advantage in fluctuating oxygen levels often found in clinical environments. Notably, Acinetobacter species, including A. radioresistens, are recognized for their remarkable resistance to radiation and desiccation, which enhances their survival in extreme conditions. This resilience has implications for their persistence in healthcare-associated infections, where they can pose significant risks, especially to immunocompromised patients. Their ability to acquire resistance genes also raises concerns about their role in the spread of antibiotic resistance within clinical settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter radioresistens Negative Aerobe 1217674 APQE00000000.1 Bac0005235 Acinetobacter soli NIPH 2899 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter soli 1217677 APPV00000000.1 Bac0005236 Acinetobacter calcoaceticus ANC 3811 "Acinetobacter calcoaceticus ANC 3811 is a Gram-negative bacterium characterized by its aerobic metabolic requirements. This microbe thrives in environments where oxygen is readily available, reflecting its adaptation to aerobic conditions. As a member of the Acinetobacter genus, A. calcoaceticus is known for its robust survival capabilities in various environments, including soil and water, which may contribute to its resilience and ability to persist in fluctuating ecological niches.↵↵The Gram-negative nature of A. calcoaceticus ANC 3811 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural feature is significant for its interactions with the environment and may influence its response to antibiotics and other antimicrobial agents.↵↵While specific interactions with its ecosystem are not detailed, the aerobic lifestyle of A. calcoaceticus ANC 3811 suggests its potential role in biogeochemical cycles, particularly in the decomposition of organic materials in oxygen-rich habitats. The ability of this organism to utilize various substrates may enhance its ecological versatility, allowing it to occupy diverse niches in both natural and anthropogenic environments. Overall, A. calcoaceticus ANC 3811 exemplifies the adaptive strategies of aerobic Gram-negative bacteria in ecological communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus Negative Aerobe 1217690 APQJ00000000.1 Bac0005237 Acinetobacter sp. NIPH 298 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. NIPH 298 1217692 APRM00000000.1 Bac0005238 Acinetobacter sp. ANC 3929 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 3929 1217707 APRH00000000.1 Bac0005239 Acinetobacter sp. NIPH 2100 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. NIPH 2100 1217708 APSB00000000.1 Bac0005240 Acinetobacter bohemicus ANC 3994 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bohemicus aerobic 1217715 APOH00000000.1 Bac0005241 Dehalogenimonas alkenigignens str. IP3-3 "Dehalogenimonas alkenigignens str. IP3-3 is a Gram-negative, non-spore-forming spherical bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 32.0°C. This organism is notable for its ability to dehalogenate alkenes, a process that is significant in bioremediation and the detoxification of halogenated compounds in the environment. ↵↵As a member of the microbial community, D. alkenigignens str. IP3-3 plays a crucial role in the degradation of environmental pollutants, particularly in anaerobic habitats where halogenated alkenes may accumulate. Its unique metabolic capabilities suggest potential applications in biotechnological processes aimed at environmental cleanup. The ability to grow optimally at 32.0°C indicates that it may be well-suited for temperate environments where such temperatures are prevalent. ↵↵Understanding the physiological traits and metabolic pathways of D. alkenigignens str. IP3-3 could provide insights into its interactions within microbial consortia and its effectiveness in bioremediation strategies, particularly in sites contaminated with industrial solvents and chlorinated hydrocarbons." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas alkenigignens Gram-negative sphere non-motile anaerobic 32 mesophilic non-spore-forming 1217799 LFDV00000000.1 Bac0005242 Nonlabens arenilitoris str. KCTC 32109 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens arenilitoris aerobic 1217969 MTPW00000000.1 Bac0005243 Vannielia litorea Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Vannielia Vannielia litorea 1217970 FSRL00000000.1 Bac0005244 Acinetobacter schindleri CIP 107287 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter schindleri 1217988 APPQ00000000.1 Bac0005245 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 "Flavobacterium branchiophilum NBRC 15030 (ATCC 35035) is a rod-shaped, nonsporulating bacterium classified as a chemoheterotroph, indicating its reliance on organic compounds as a primary energy source. This microbe has been identified in diverse habitats, suggesting a broad ecological adaptability. Its rod shape is characteristic of the Flavobacterium genus, which is notable for the presence of yellow-pigmented colonies, a trait that may help in the identification and differentiation from other bacterial species.↵↵Flavobacterium branchiophilum's chemoheterotrophic lifestyle allows it to metabolize a variety of organic substrates, which may contribute to its presence in varied environments. This metabolic versatility may facilitate its survival in ecosystems with fluctuating nutrient availability, thus enhancing its ecological resilience. The ability of F. branchiophilum to thrive in multiple habitats could also suggest its role in biogeochemical cycling, potentially influencing organic matter decomposition and nutrient turnover in those ecosystems.↵↵Overall, Flavobacterium branchiophilum serves as an important representative of the Flavobacteriaceae family, with its metabolic characteristics enabling it to occupy various ecological niches and contribute to microbial community dynamics. Further studies on its ecological roles could provide insights into its interactions with other microorganisms and its contributions to environmental processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium branchiophilum Rod No 1 Chemoheterotroph Multiple Nonsporulating 1218110 MUGT00000000.1 Bac0005246 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 str. AV1934 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalihalobacillus Alkalihalobacillus alcalophilus 1218173 ALPT00000000.2 Bac0005247 Bacillus thuringiensis HD-771 "Bacillus thuringiensis HD-771 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to withstand adverse environmental conditions. This strain is categorized as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, providing it with metabolic flexibility in various habitats. Notably, B. thuringiensis HD-771 is host-associated, suggesting a specialization or interaction with specific host organisms, which could influence its ecological role and applications.↵↵The sporulating capability of B. thuringiensis HD-771 enables it to produce endospores that are highly resilient, facilitating survival during periods of nutrient scarcity or environmental stress. This trait is particularly significant in the context of its potential use in biocontrol applications, where the bacterium may provide benefits in pest management by targeting specific insect hosts while remaining dormant in unfavorable conditions.↵↵Overall, the unique combination of its morphology, metabolic versatility, and host association indicates that B. thuringiensis HD-771 may play a crucial role in both natural ecosystems and agricultural settings, potentially influencing the dynamics of microbial communities in its habitats. Further exploration into its interactions with hosts will be essential for understanding its ecological significance and potential applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1218175 NC_018503.1 Bac0005248 Pseudomonas stutzeri KOS6 "Pseudomonas stutzeri KOS6 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolism, relying on organic compounds as a heterotrophic energy source. This microbe is associated with host environments, suggesting a potential role in symbiotic or commensal relationships within various biological systems.↵↵The aerobic nature of Pseudomonas stutzeri KOS6 indicates its ability to thrive in oxygen-rich environments, which may be significant for its interactions within host-associated habitats. Its heterotrophic lifestyle allows it to utilize a diverse range of organic substrates, potentially contributing to nutrient cycling and organic matter decomposition in its ecological niche.↵↵Understanding the specific habitat and role of Pseudomonas stutzeri KOS6 may provide insights into its interactions with host organisms and its potential contributions to microbial communities. Its ability to adapt to host-associated environments highlights the importance of microbial diversity in maintaining ecological balance and promoting health within those systems. Further investigation into its metabolic capabilities and interactions may reveal additional functional roles that this bacterium plays in its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 1218352 AMCZ00000000.2 Bac0005249 Bombilactobacillus mellifer str. Bin4 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bombilactobacillus Bombilactobacillus mellifer 1218492 JXJQ00000000.1 Bac0005250 Apilactobacillus apinorum str. Fhon13 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus apinorum gut of honeybee; honey 1218495 JXCT00000000.1 Bac0005251 Lactobacillus kimbladii str. Hma2 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus kimbladii anaerobic fresh honey 1218506 JXLH00000000.1 Bac0005252 Leptospira alstonii serovar Pingchang str. 80-412 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira alstonii 1218564 AOHD00000000.2 Bac0005253 Leptospira alstonii serovar Sichuan str. 79601 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira alstonii 1218565 ANIK00000000.1 Bac0005254 Leptospira wolbachii serovar Codice str. CDC Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira wolbachii 1218599 AOGZ00000000.2 Bac0005255 Sphingomonas parapaucimobilis NBRC 15100 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas parapaucimobilis aerobic 1219049 BBPI00000000.1 Bac0005256 Sphingomonas paucimobilis NBRC 13935 "Sphingomonas paucimobilis NBRC 13935 is a nonsporulating, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in aerobic environments. This microbe is characterized by its ability to utilize a variety of organic compounds as energy sources, which enables it to inhabit diverse habitats. The aerobic nature of S. paucimobilis NBRC 13935 suggests a dependence on oxygen for its metabolic processes, which aligns with its classification within the Sphingomonadaceae family.↵↵This bacterium has been isolated from multiple environments, indicating its ecological versatility and adaptability to varying conditions. Its varied habitat suggests potential roles in biogeochemical cycles and environmental microbiology, particularly in the degradation of complex organic materials. The presence of S. paucimobilis NBRC 13935 in different ecosystems highlights its potential importance in nutrient cycling and its ability to contribute to the breakdown of pollutants or organic waste.↵↵Further studies could illuminate the specific ecological niches occupied by Sphingomonas paucimobilis NBRC 13935 and its interactions with other microorganisms, which may provide valuable insights into microbial community dynamics and the role of chemoheterotrophic bacteria in ecosystem functioning." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas paucimobilis Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1219050 BBJS00000000.1 Bac0005257 Vibrio proteolyticus NBRC 13287 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio proteolyticus aerobic 1219065 BATJ00000000.1 Bac0005258 Vibrio ezurae NBRC 102218 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ezurae aerobic 1219080 BATM00000000.1 Bac0005259 Acinetobacter boissieri "Acinetobacter boissieri is a Gram-negative, ovoid-shaped bacterium that thrives in aerobic environments. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for survival and replication. Acinetobacter species, including A. boissieri, are commonly found in various environments, including soil and water, and can persist in hospital settings due to their resilience.↵↵The aerobic requirement of A. boissieri indicates that it utilizes oxygen for its metabolic processes, which may influence its distribution in both natural and artificial ecosystems. This trait is particularly significant when considering its potential interactions with other microbial communities. Aerobic bacteria often play critical roles in biogeochemical cycles, such as nitrogen and carbon cycling, thereby impacting nutrient availability and ecosystem dynamics.↵↵In summary, A. boissieri exemplifies the adaptability of Gram-negative bacteria within diverse habitats, demonstrating how aerobic conditions can shape the ecological roles of microbial species. Further investigation into its interactions within microbial consortia could reveal insights into its contributions to environmental processes and its potential applications in biotechnology or bioremediation." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter boissieri Gram-negative ovoid non-motile aerobic non-spore-forming 1219383 FMYL00000000.1 Bac0005260 Peptostreptococcus sp. MV1 "Peptostreptococcus sp. MV1 is a Gram-positive, anaerobic coccus that belongs to the genus Peptostreptococcus. This organism is characterized by its spherical shape, which is typical of cocci, and its ability to thrive in oxygen-free environments. As an anaerobe, Peptostreptococcus sp. MV1 relies on fermentation pathways for energy production, utilizing organic substrates in the absence of oxygen.↵↵The ecological role of Peptostreptococcus species is often associated with their presence in various environments, particularly in the human microbiome where they contribute to the complex interplay of microbial communities. These bacteria are generally involved in the degradation of organic materials, playing a potential role in nutrient cycling within their habitats.↵↵While the specific ecological interactions and contributions of Peptostreptococcus sp. MV1 have not been fully elucidated, its anaerobic nature suggests it may occupy niches that are rich in organic matter yet devoid of oxygen, such as within the gastrointestinal tract or in certain environmental settings like sediments. Further research into this strain could provide insight into its functional role in microbial communities and its interactions with other microorganisms in anaerobic ecosystems, enhancing our understanding of microbial diversity and its implications for ecosystem health." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus sp. MV1 Positive Cocci anaerobic 1219626 JRNB00000000.1 Bac0005261 alpha proteobacterium IMCC14465 Pseudomonadati Pseudomonadota Alphaproteobacteria alpha proteobacterium IMCC14465 1220535 ALYF00000000.1 Bac0005262 Agrobacterium rhizogenes NBRC 13257 "Agrobacterium rhizogenes NBRC 13257 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolic characteristics. This species is known to optimally grow at a temperature of 25.0°C, indicating its preference for moderate environmental conditions. As an aerobic organism, A. rhizogenes actively requires oxygen for its survival and growth, which aligns with its ecological niche in soil and other terrestrial environments.↵↵The unique physiological traits of A. rhizogenes suggest its potential role in soil ecosystems, possibly contributing to nutrient cycling or plant-microbe interactions. While specific pathogenicity and ecological roles are not detailed in the provided information, the presence of this bacterium in terrestrial habitats implies a potential involvement in plant root interactions, which is characteristic of the Agrobacterium genus. This insight points to A. rhizogenes NBRC 13257's potential importance in understanding microbial dynamics in soil environments and its interactions with plant systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella rhizogenes Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial 1220581 BAYX00000000.1 Bac0005263 Gordonia aichiensis NBRC 108223 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia aichiensis 37 mesophilic 1220583 BANR00000000.1 Bac0005264 Pseudomonas fluorescens NCIMB 11764 "Pseudomonas fluorescens NCIMB 11764 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is characterized by its heterotrophic metabolism. This organism thrives optimally at a temperature of 25°C and is classified as an aerobe, requiring oxygen for its growth and metabolic processes. ↵↵Pseudomonas fluorescens is known for its versatile habitat, which includes a range of environments, reflecting its adaptability and ecological significance. Its ability to utilize various organic compounds as energy sources allows it to occupy diverse ecological niches, making it a common inhabitant of soil, water, and plant surfaces.↵↵The presence of Pseudomonas fluorescens in multiple habitats underscores its potential role in bioremediation and nutrient cycling. This strain, like other members of the Pseudomonas genus, may contribute to the degradation of organic pollutants, thereby assisting in the maintenance of ecological balance. Moreover, its metabolic capabilities may have implications for its interactions with other microorganisms in the environment, highlighting its importance in microbial communities where it can influence nutrient availability and ecological dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1221522 NZ_CP010945.1 Bac0005265 Fructilactobacillus florum 8D Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus florum 1221538 ALXG00000000.1 Bac0005266 bacterium endosymbiont of Escarpia laminata bacterium endosymbiont of Escarpia laminata 1221601 QGOM00000000.1 Bac0005267 Parageobacillus toebii NBRC 107807 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus toebii 1223503 NZ_CP049704.1 Bac0005268 Gordonia sihwensis NBRC 108236 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sihwensis 29 mesophilic 1223544 BANU00000000.1 Bac0005269 Gordonia soli NBRC 108243 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia soli 29 mesophilic 1223545 BANX00000000.1 Bac0005270 Corynebacterium marinum DSM 44953 "Corynebacterium marinum DSM 44953 is a Gram-positive, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolic capabilities, thriving optimally at a temperature of 32.0°C. This organism belongs to the genus Corynebacterium, which is known for its diverse ecological roles and adaptability to varying environmental conditions. Its facultative nature allows C. marinum to utilize both aerobic respiration and fermentation, depending on the oxygen availability, which may contribute to its survival in fluctuating aquatic environments.↵↵The optimal growth temperature of 32.0°C suggests that C. marinum may be well-suited for life in temperate aquatic ecosystems where such thermal conditions are prevalent. This adaptability might indicate a role in nutrient cycling within these habitats, potentially influencing microbial community dynamics. Furthermore, the rod shape of C. marinum enhances its surface-to-volume ratio, which could facilitate nutrient uptake and metabolic efficiency in its natural environment.↵↵Overall, C. marinum DSM 44953 exemplifies the ecological versatility and metabolic adaptability of the Corynebacterium genus, indicating its potential significance in aquatic microbial communities where temperature and oxygen levels can vary dramatically." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium marinum Gram-positive rod non-motile facultative aerobe/anaerobe 32 mesophilic 1224162 NZ_CP007791.1 Bac0005271 Corynebacterium maris DSM 45190 str. Coryn-1 "Corynebacterium maris DSM 45190 str. Coryn-1 is a Gram-positive, ovoid-shaped bacterium that thrives under aerobic conditions and has an optimal growth temperature of 25.0 °C. As a non-spore-forming organism, it does not produce spores as a means of survival, which may influence its ecological niche and interactions with other microbial communities. The Gram-positive nature of C. maris suggests a robust cell wall structure, characteristic of many members of the genus Corynebacterium, which may confer resilience in various environments.↵↵Corynebacterium maris is noteworthy for its specific growth requirements, particularly its preference for aerobic conditions, indicating that it relies on oxygen for its metabolic processes. This trait positions it within ecosystems where oxygen is readily available, potentially influencing its distribution and interactions with other microbial species. ↵↵Further investigation into the metabolic pathways and ecological role of C. maris could provide insights into its contributions to nutrient cycling in its native habitat. The non-spore-forming nature of this organism may also suggest a more specialized ecological strategy, relying on favorable environmental conditions to maintain viability, thereby potentially influencing community dynamics in its ecosystem." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium maris Gram-positive ovoid non-motile aerobic 25 mesophilic non-spore-forming 1224163 NC_021920.1 Bac0005272 Mangrovibacter sp. MFB070 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Mangrovibacter Mangrovibacter sp. MFB070 1224318 JJMI00000000.1 Bac0005273 Solibacillus isronensis B3W22 "Solibacillus isronensis B3W22 is a rod-shaped, spore-forming bacterium that exhibits distinct characteristics aligning with its classification within the genus Solibacillus. This microbe is notable for its ability to produce spores, a trait that enhances its resilience and survival in various environmental conditions. The rod shape of Solibacillus isronensis B3W22 is typical of many members of the Bacillaceae family, which is known for its diverse metabolic capabilities and adaptability.↵↵As a spore-forming bacterium, Solibacillus isronensis B3W22 can enter a dormant state under unfavorable conditions, allowing it to withstand stressors such as nutrient depletion, extreme temperatures, and desiccation. This ability to form spores is a significant evolutionary advantage, facilitating persistence in fluctuating environments.↵↵While specific ecological roles or interactions of Solibacillus isronensis B3W22 have not been detailed, the general traits of spore-forming rod bacteria suggest potential applications in soil health and bioremediation. The resilience provided by sporulation may enable this bacterium to contribute to nutrient cycling and soil structure improvement, thereby enhancing ecosystem functionality. Further research into its ecological interactions could reveal insights into the role of Solibacillus isronensis B3W22 in microbial communities and its potential applications in agriculture or environmental biotechnology." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Solibacillus Solibacillus isronensis rod spore-forming 1224748 AMCK00000000.1 Bac0005274 Klenkia taihuensis "Klenkia taihuensis is a Gram-positive, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of approximately 29.0 °C. This organism is characterized by its ability to metabolize various substrates in the presence of oxygen, which is indicative of its aerobic nature. The Gram-positive status suggests the presence of a thick peptidoglycan layer in its cell wall, a trait that is associated with certain physiological and structural characteristics relevant to its survival and function in diverse environments.↵↵The optimal temperature of 29.0 °C suggests that Klenkia taihuensis may be well-adapted to moderate thermal conditions, potentially reflecting its ecological niche in environments that maintain such temperatures. While specific ecological roles and interactions have not been detailed, the combination of aerobic metabolism and the optimal growth temperature indicates that this bacterium may play a role in nutrient cycling in habitats such as freshwater or soil environments, where it could contribute to the breakdown of organic matter and the release of nutrients essential for other organisms.↵↵Understanding the physiological traits of Klenkia taihuensis can provide insights into its potential applications in biotechnology, particularly in processes that require aerobic degradation of organic compounds under mesophilic conditions." Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Klenkia Klenkia taihuensis Gram-positive rod aerobic 29 mesophilic 1225127 FOMD00000000.1 Bac0005275 Streptomyces sp. PVA_94-07 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PVA_94-07 1225337 NZ_CM002273.1 Bac0005276 Thalassobacter sp. 16PALIMAR09 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Thalassobacter Thalassobacter sp. 16PALIMAR09 1225651 JHAK00000000.1 Bac0005277 Lactobacillus helveticus CIRM-BIA 104 "Lactobacillus helveticus CIRM-BIA 104 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This strain thrives in various habitats, indicative of its versatile metabolic capabilities and adaptability to different environmental conditions. ↵↵As a member of the Lactobacillus genus, L. helveticus is known for its role in the fermentation of dairy products, particularly in cheese production, where it contributes to flavor development and texture. The facultative anaerobic nature of this strain allows it to survive in both oxygen-rich and oxygen-poor environments, making it well-suited for the complex microbiomes found in various food matrices and possibly in the gastrointestinal tracts of animals.↵↵The ability of L. helveticus CIRM-BIA 104 to form chains may enhance its stability and functionality during fermentation processes, as these arrangements can influence interaction with substrates and other microbial species. Overall, the ecological versatility and metabolic flexibility of this strain suggest that it plays a significant role in diverse fermentation ecosystems, contributing to the biotechnological applications in food production and potentially in gut health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1226333 CBUL000000000.1 Bac0005278 Lactobacillus helveticus CIRM-BIA 101 "Lactobacillus helveticus CIRM-BIA 101 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic conditions, which may enable it to thrive in diverse habitats. L. helveticus is known for its role in dairy fermentation, often contributing to the production of cheese and yogurt, where its metabolic activities are integral to flavor development and texture enhancement.↵↵The adaptability of L. helveticus CIRM-BIA 101 to various oxygen levels suggests a versatile metabolic capacity, potentially allowing it to occupy niches that may fluctuate in oxygen availability. This characteristic is particularly significant in environments such as the gastrointestinal tract, where oxygen concentration can vary considerably. The strain’s ability to form chains may also influence its interactions with other microbial communities in its habitat, facilitating biofilm formation and enhancing competitive survival.↵↵Overall, Lactobacillus helveticus CIRM-BIA 101 exemplifies the functional diversity of lactic acid bacteria, showcasing its importance not only in food production but also in maintaining ecological balance within microbial ecosystems. Its facultative anaerobic nature and chain-forming morphology may play crucial roles in its ecological adaptability and functional contributions to fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1226336 CBUN000000000.1 Bac0005279 Acetobacter pasteurianus NBRC 3278 "Acetobacter pasteurianus NBRC 3278 is a Gram-negative, nonsporulating bacterium that thrives in aerobic conditions and exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources. This microorganism is optimally adapted to a temperature of 30.0°C, which aligns with its habitat as a dairy isolate, indicating a significant association with dairy environments.↵↵The nonsporulating nature of A. pasteurianus suggests a reliance on stable environmental conditions for survival and growth rather than the formation of spores for resilience against adverse conditions. As an aerobic organism, it requires oxygen for its metabolic processes, which is consistent with its isolation from dairy sources where oxygen is typically present in varying concentrations.↵↵Understanding the traits of A. pasteurianus can provide insights into its role in dairy fermentation processes, where it may contribute to the oxidation of ethanol and other substrates, potentially influencing the flavor and preservation of dairy products. Furthermore, its ability to thrive in the specific temperature range of 30.0°C may make it an important player in the microbiological dynamics of dairy environments, particularly in the production of vinegar and other fermented products. The ecological niche of A. pasteurianus highlights its significance in both the dairy industry and the broader context of fermentation microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1226660 BDEV00000000.1 Bac0005280 Mycolicibacterium mucogenicum DSM 44124 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium mucogenicum 1226753 NZ_CP062008.1 Bac0005281 Azospirillum humicireducens str. SgZ-5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum humicireducens 1226968 NZ_CP028903.1 Bac0005282 Paenibacillus sp. FSL R5-808 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R5-808 1227076 ASPT00000000.1 Bac0005283 Actinobaculum sp. oral taxon 183 str. F0552 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum sp. oral taxon 183 1227261 AWSB00000000.1 Bac0005284 Leptotrichia sp. oral taxon 879 str. F0557 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 879 1227268 AWVL00000000.1 Bac0005285 Haloarcula amylolytica JCM 13557 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula amylolytica 1227452 AOLW00000000.1 Bac0005286 Haloarcula japonica DSM 6131 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula japonica 1227453 AOLY00000000.1 Bac0005287 Halobiforma nitratireducens JCM 10879 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halobiforma Halobiforma nitratireducens 1227454 AOMA00000000.1 Bac0005288 Halococcus saccharolyticus DSM 5350 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus saccharolyticus 1227455 AOMD00000000.1 Bac0005289 Haloferax gibbonsii ATCC 33959 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax gibbonsii 1227459 AOLJ00000000.1 Bac0005290 Haloferax sp. ATCC BAA-644 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. ATCC BAA-644 1227462 AOLF00000000.1 Bac0005291 Haloferax sp. ATCC BAA-645 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. ATCC BAA-645 1227463 AOLE00000000.1 Bac0005292 Haloferax sp. ATCC BAA-646 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. ATCC BAA-646 1227464 AOLD00000000.1 Bac0005293 Halorubrum californiense DSM 19288 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum californiense 1227465 AOJK00000000.1 Bac0005294 Halorubrum distributum JCM 9100 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum distributum 1227467 AOJM00000000.1 Bac0005295 Halorubrum distributum JCM 10118 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum distributum 1227468 AOJN00000000.1 Bac0005296 Halorubrum hochstenium ATCC 700873 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum hochstenium 1227481 AOJO00000000.1 Bac0005297 Halorubrum lipolyticum DSM 21995 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum lipolyticum 1227482 AOJG00000000.1 Bac0005298 Halorubrum saccharovorum DSM 1137 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum saccharovorum 37 1227484 AOJE00000000.1 Bac0005299 Halorubrum tebenquichense DSM 14210 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum tebenquichense 1227485 AOJD00000000.1 Bac0005300 Halorubrum distributum JCM 10247 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum distributum 1227486 AOIW00000000.1 Bac0005301 Halogeometricum pallidum JCM 14848 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogeometricum Halogeometricum pallidum 1227487 AOIV00000000.1 Bac0005302 Natrialba chahannaoensis JCM 10990 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba chahannaoensis 1227492 AOIN00000000.1 Bac0005303 Natrinema pallidum DSM 3751 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema pallidum 1227495 AOII00000000.1 Bac0005304 Natronococcus jeotgali DSM 18795 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus jeotgali 1227498 AOIA00000000.1 Bac0005305 Natronolimnohabitans innermongolicus JCM 12255 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronolimnohabitans Natronolimnohabitans innermongolicus 1227499 AOHZ00000000.1 Bac0005306 Hymenobacter swuensis DY53 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter swuensis 1227739 NZ_CP007143.1 Bac0005307 Robertkochia marina Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Robertkochia Robertkochia marina 1227945 SSMC00000000.1 Bac0005308 Riemerella anatipestifer RA-CH-1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella anatipestifer 1228997 NC_018609.1 Bac0005309 Paraburkholderia phenoliruptrix BR3459a Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia phenoliruptrix aerobic 1229205 NC_018695.1 Bac0005310 Salipiger profundus str. JLT2016 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger profundus 1229727 NZ_CP014803.1 Bac0005311 Leuconostoc gelidum JB7 "Leuconostoc gelidum JB7 is a Gram-positive, coccoid-shaped bacterium that thrives in low-temperature environments, categorizing it as a psychrotroph. It is a chemoheterotroph, deriving energy from organic compounds, and it exhibits facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic conditions.As a psychrotroph, Leuconostoc gelidum JB7 is particularly well-adapted to cold temperatures, often found in various food preservation settings, such as fermented dairy products and cold storage environments. The Gram-positive characteristic indicates a thick peptidoglycan layer in its cell wall, which not only provides structural integrity but also helps it survive harsh conditions, including those found in refrigerated foods. As a coccoid-shaped microbe, Leuconostoc gelidum JB7 displays a spherical form, which is typical for many lactic acid bacteria. This shape contributes to its ability to form clusters or chains, enhancing its survival and metabolic efficiency in diverse ecological niches. Being classified as a chemoheterotroph, it relies on organic substrates for energy and carbon. This characteristic allows it to play a significant role in the fermentation processes of various foods, contributing to flavor, texture, and preservation. Moreover, its facultative anaerobic nature permits it to adapt to varying oxygen levels, making it a versatile organism in both natural ecosystems and food production contexts. Leuconostoc gelidum JB7 has been shown to produce exopolysaccharides, which can enhance the texture and mouthfeel of fermented products. Its presence is often beneficial in food fermentation, contributing not only to preservation but also to the development of distinctive flavors in products like kimchi and sauerkraut, showcasing its importance in both food science and microbiology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc gelidum Positive Facultative anaerobe 1229756 NC_018631.1 Bac0005312 Leuconostoc carnosum JB16 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc carnosum aerobic 1229758 NC_018698.1 Bac0005313 Chlamydia avium 10DC88 Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia avium 1229831 NZ_CP006572.1 Bac0005314 Moraxella macacae 0408225 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella macacae 1230338 ANIN00000000.1 Bac0005315 Natrialba taiwanensis DSM 12281 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba taiwanensis 1230458 AOIL00000000.1 Bac0005316 Ichthyenterobacterium magnum str. DSM 26283 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Ichthyenterobacterium Ichthyenterobacterium magnum 1230530 RAQJ00000000.1 Bac0005317 Thermotoga sp. Mc24 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. Mc24 1231241 JSFH00000000.1 Bac0005318 Acidomonas methanolica NBRC 104435 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acidomonas Acidomonas methanolica 1231351 BAND00000000.1 Bac0005319 Oceaniovalibus guishaninsula JLT2003 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Oceaniovalibus Oceaniovalibus guishaninsula 1231392 AMGO00000000.1 Bac0005320 Tanticharoenia sakaeratensis NBRC 103193 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Tanticharoenia Tanticharoenia sakaeratensis 1231623 BALE00000000.1 Bac0005321 Helicobacter pylori A45 "Helicobacter pylori A45 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated microbe, often found in the gastric environment of various hosts. ↵↵As a member of the Helicobacter genus, H. pylori A45 shares traits common to this group, notably its ability to survive in low-oxygen conditions, which is indicative of its adaptation to the unique physiological conditions of the stomach. The microaerophilic nature of H. pylori A45 suggests a specialized metabolic pathway that allows it to utilize available oxygen in a controlled manner while avoiding the detrimental effects of high oxygen concentrations typically found in the environment outside of the host.↵↵The solitary arrangement of H. pylori A45 may provide advantages in navigating the viscous mucus layer of the gastric epithelium, potentially influencing its colonization and survival in the host's stomach. Understanding the specific traits of H. pylori A45 can contribute to insights into the ecological niches occupied by Helicobacter species and their interactions within the host's microbiome, highlighting the intricate balance of microbial life that exists in host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1231719 NZ_CP053256.1 Bac0005322 Clostridium botulinum CFSAN001627 "Clostridium botulinum CFSAN001627 is a Gram-positive, rod-shaped bacterium characterized by its ability to form pairs, singles, or chains. This species is classified as an anaerobe, meaning it thrives in environments devoid of oxygen, and it utilizes organic compounds as a source of energy, categorizing it as a chemoorganotroph. The optimal growth temperature for C. botulinum CFSAN001627 is approximately 37.0 °C, aligning with the temperature range typical for many pathogenic and saprophytic organisms.↵↵The habitat of C. botulinum CFSAN001627 is noted to be diverse, which may contribute to its survival and adaptability in various environments. As a member of the Clostridium genus, this strain is likely associated with anoxic conditions prevalent in soil, sediments, and certain food matrices, where it may play a role in nutrient cycling and organic matter decomposition.↵↵Understanding the ecological niches occupied by C. botulinum CFSAN001627 can provide insights into its potential interactions within microbial communities and its role in various biogeochemical processes. The versatility in its habitat and metabolic capabilities suggests that this strain may contribute to the dynamics of anaerobic ecosystems, highlighting its importance not only in a clinical context but also in environmental microbiology." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1232189 AMXI00000000.1 Bac0005323 Lunatimonas lonarensis str. AK24 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Lunatimonas Lunatimonas lonarensis 1232681 AQHR00000000.1 Bac0005324 Mycobacterium intracellulare subsp. intracellulare MTCC 9506 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 1232724 NC_018612.1 Bac0005325 Caballeronia udeis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia udeis aerobic 1232866 FCOK00000000.2 Bac0005326 Bacillus subtilis XF-1 "Bacillus subtilis XF-1 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate, which enables it to survive in diverse environmental conditions. This strain is facultatively anaerobic, meaning it can thrive in both aerobic and anaerobic environments, thereby enhancing its adaptability to varying habitats. B. subtilis XF-1 prefers an optimal growth temperature of 25.0°C, suggesting it may be well-suited to moderate conditions often found in its natural host-associated habitats.↵↵As a member of the Bacillus genus, B. subtilis XF-1 is likely to play a significant role in nutrient cycling within its ecological niche. The ability to form spores is particularly advantageous for persisting through unfavorable conditions, including nutrient limitation or desiccation. This trait may also facilitate its survival and potential colonization within host organisms, where it could contribute to various symbiotic or associative relationships.↵↵The facultative metabolism of B. subtilis XF-1 allows for flexible energy utilization strategies, which can be crucial for survival in fluctuating environments. This versatility may also provide insights into its ecological interactions, potentially influencing microbial community dynamics in host-associated ecosystems. Overall, the traits of B. subtilis XF-1 illuminate its potential roles in both environmental resilience and symbiotic relationships within its host." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1233100 NC_020244.1 Bac0005327 Paraclostridium bifermentans ATCC 638 = DSM 14991 "Paraclostridium bifermentans ATCC 638 (= DSM 14991) is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, which is consistent with its habitat as a component of animal intestinal microflora. Paraclostridium bifermentans is strictly anaerobic, indicating that it requires an environment devoid of oxygen for growth and metabolic activity.↵↵This organism's ability to sporulate may enhance its survival in fluctuating conditions within the intestinal environment, allowing it to persist through unfavorable circumstances. The presence of this bacterium in the gut microbiome suggests a potential role in the fermentation processes that contribute to gut health and nutrient absorption in host animals. Furthermore, its anaerobic nature aligns with the general conditions of the intestinal tract, where oxygen levels are typically low, enabling it to occupy a niche that may be less accessible to aerobic competitors.↵↵Overall, the adaptive traits of Paraclostridium bifermentans not only highlight its ecological role in the intestinal microflora but also suggest a significant contribution to the complex interactions within the gut microbiome, possibly influencing metabolic pathways and the overall health of the host." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium bifermentans Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Sporulating 1233171 AVNC00000000.1 Bac0005328 Chitinophaga solisilvae Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga solisilvae 1233460 RIAR00000000.2 Bac0005329 Thauera aminoaromatica S2 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera aminoaromatica 1234381 AMXD00000000.1 Bac0005330 Thauera phenylacetica B4P Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera phenylacetica 1234382 AMXF00000000.1 Bac0005331 Pacificimonas flava str. JLT2015 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingosinicellaceae Pacificimonas Pacificimonas flava 1234595 AMRV00000000.1 Bac0005332 Brucella intermedia M86 "Brucella intermedia M86 is a microaerophilic, Gram-negative bacterium. This organism is part of the Brucella genus, which is known for its adaptation to specific environmental conditions, requiring reduced oxygen levels for optimal growth. The Gram-negative characteristic indicates that B. intermedia M86 possesses a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interactions with host organisms and environmental factors.↵↵Microaerophilic bacteria, such as B. intermedia M86, typically thrive in environments where oxygen levels are lower than those present in the atmosphere. This trait suggests that B. intermedia M86 may be adapted to particular niches that provide the necessary conditions for its growth, potentially including host-associated environments or specific ecological settings where oxygen is limited.↵↵The unique combination of its Gram-negative structure and microaerophilic nature may confer specific metabolic capabilities that allow B. intermedia M86 to utilize various substrates under low-oxygen conditions. Understanding these traits is crucial for appreciating the ecological roles that this bacterium may play, particularly in nutrient cycling or interactions with other microorganisms in its habitat. Further studies could illuminate the potential ecological impacts and evolutionary adaptations of B. intermedia M86 in its native environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella intermedia Negative Microaerophilic 1234597 AOGE00000000.1 Bac0005333 Komagataeibacter xylinus NBRC 13693 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter xylinus 1234668 BANJ00000000.1 Bac0005334 Lactococcus cremoris subsp. cremoris TIFN1 "Lactococcus cremoris subsp. cremoris TIFN1 is a Gram-positive, nonsporulating cocci that thrives in various habitats and exhibits facultative anaerobic metabolism. This strain is optimally adapted to a temperature of 40.0°C, which suggests a preference for warm environments that could favor its growth and activity. ↵↵As a member of the Lactococcus genus, L. cremoris subsp. cremoris TIFN1 plays a significant role in dairy fermentation processes, contributing to the production of lactic acid and influencing the flavor profile of fermented dairy products. Its facultative anaerobic nature allows it to grow in both the presence and absence of oxygen, which expands its ecological niche and adaptability in diverse environments. ↵↵The ability of this strain to thrive at elevated temperatures may indicate potential applications in industrial fermentation processes, where temperature control is critical. Additionally, understanding the growth conditions and metabolic capabilities of L. cremoris subsp. cremoris TIFN1 can provide insights into its role in microbial communities, particularly in dairy ecosystems, where it may interact with other microorganisms to shape fermentation dynamics and product characteristics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1234871 ASXF00000000.1 Bac0005335 Lactococcus cremoris subsp. cremoris TIFN3 "Lactococcus cremoris subsp. cremoris TIFN3 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 40.0°C, indicating its potential adaptation to warmer environments, which may influence its ecological interactions and applications in fermentation processes. ↵↵L. cremoris subsp. cremoris is typically associated with dairy products, where it plays a crucial role in the fermentation of milk, leading to the production of lactic acid and contributing to the flavor and texture of various cheeses. Its ability to grow in multiple habitats suggests a versatile nature, allowing it to occupy diverse ecological niches, particularly in environments rich in lactose.↵↵The facultative anaerobic characteristic enables L. cremoris subsp. cremoris TIFN3 to survive and flourish in both oxygen-rich and oxygen-poor conditions, making it well-suited for fermentation processes where oxygen levels may fluctuate. This adaptability may also enhance its potential utility in biotechnological applications, such as the development of starter cultures for dairy fermentation, where it can contribute to the desired metabolic processes under varying environmental conditions.↵↵The ability of this strain to thrive in multiple habitats and its optimal growth temperature point towards its potential role in bioprocessing systems that require specific thermal conditions, further emphasizing its significance in both ecological and industrial microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1234873 ATBE00000000.1 Bac0005336 Lactococcus cremoris subsp. cremoris TIFN7 "Lactococcus cremoris subsp. cremoris TIFN7 is a Gram-positive cocci that exhibits facultative anaerobic metabolism and is nonsporulating. This strain thrives at an optimal temperature of 40.0°C, indicating a potential adaptability to warmer environments, which may influence its role in various habitats. ↵↵As a member of the Lactococcus genus, L. cremoris subsp. cremoris TIFN7 is likely involved in fermentative processes, particularly in dairy applications, where it is commonly utilized in the production of cheese and other fermented dairy products. The strain's ability to grow in multiple habitats suggests a versatile ecological niche, potentially allowing it to occupy diverse environments, including those with varying nutrient availabilities and oxygen levels. ↵↵The facultative anaerobic nature of this microbe enables it to adapt to fluctuating oxygen concentrations, which may enhance its survival and metabolic efficiency in different ecological contexts. This adaptability not only supports its industrial applications but may also provide insights into its ecological interactions within microbial communities. Such traits underscore the importance of L. cremoris subsp. cremoris TIFN7 in both biotechnological applications and its potential roles in natural fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1234877 ATBA00000000.1 Bac0005337 Bhargavaea cecembensis DSE10 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Bhargavaea Bhargavaea cecembensis 1235279 AOFT00000000.1 Bac0005338 Ralstonia sp. AU12-08 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. AU12-08 1235457 ASZV00000000.1 Bac0005339 Bacteroides thetaiotaomicron dnLKV9 "Bacteroides thetaiotaomicron dnLKV9 is a Gram-negative, rod-shaped bacterium that is classified as an anaerobe, thriving in host-associated environments. This microbe is part of the diverse gut microbiota and plays a significant role in the digestion of complex polysaccharides, contributing to the host's nutritional status and energy balance.↵↵As a member of the Bacteroides genus, B. thetaiotaomicron dnLKV9 is adapted to anaerobic conditions, which are prevalent in the intestinal environment. Its ability to ferment a variety of carbohydrates allows it to produce short-chain fatty acids, which are beneficial to the host's health by serving as an energy source and influencing immune responses.↵↵Research on Bacteroides thetaiotaomicron has highlighted its importance in maintaining gut homeostasis and its potential role in modulating the host's immune system. This strain may exemplify the intricate relationships between gut microbiota and their host, illustrating the dynamic interplay that supports metabolic health and influences local and systemic immune responses. Understanding the functional capabilities of B. thetaiotaomicron dnLKV9 may provide insights into therapeutic avenues for managing gut health and related disorders." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 1235785 ASSM00000000.1 Bac0005340 Phocaeicola vulgatus dnLKV7 "Phocaeicola vulgatus dnLKV7 is a Gram-positive, rod-shaped bacterium characterized by its occurrence as single cells and its strict anaerobic metabolism. This microbe is host-associated, indicating a specific ecological relationship with its host, which may play a role in the host's microbiome. As an anaerobe, P. vulgatus dnLKV7 thrives in environments devoid of oxygen, suggesting that it may inhabit anaerobic niches within the host, such as the gastrointestinal tract.↵↵The rod shape of P. vulgatus dnLKV7 is typical of many bacteria within the phylum Firmicutes, which often exhibit diverse metabolic capabilities and ecological roles. The ability of this strain to exist as single cells rather than in clusters or chains may indicate a particular adaptation to its host environment, allowing for greater flexibility in nutrient uptake and survival in dynamic physiological conditions. ↵↵Understanding the specific interactions of P. vulgatus dnLKV7 within its host may provide insights into the broader implications of anaerobic microbial life in health and disease, particularly in relation to gut microbiota composition and function. Its strict anaerobic lifestyle underscores the importance of oxygen-free environments for certain microbial communities, highlighting the intricate balance of microbial interactions within host-associated habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 1235786 ASSN00000000.1 Bac0005341 Parabacteroides goldsteinii dnLKV18 "Parabacteroides goldsteinii dnLKV18 is a mesophilic microorganism, thriving in temperatures ranging from 25°C to 45°C, which falls under the category of moderate temperature preferences. Its metabolism is heterotrophic, meaning it obtains energy and organic compounds by breaking down complex molecules from its environment. As a chemoheterotroph, it produces energy through the oxidation of organic molecules, rather than by converting light or inorganic compounds. The microbe's energy production process is based on the breakdown of carbohydrates, proteins, and fats, allowing it to grow and multiply in a wide range of environments. As a Gram-negative bacterium, Parabacteroides goldsteinii dnLKV18 has a thin peptidoglycan layer and exhibits a characteristic Gram-staining pattern. In terms of shape, the microbe is a rod-shaped bacterium, also known as a bacillus. It can be found colonizing various body sites, including the gastrointestinal tract, lungs, and skin of humans and animals, as well as soil, water, and other environmental niches. Parabacteroides goldsteinii dnLKV18 is an obligate anaerobe, meaning it requires a reducing environment and cannot survive in the presence of oxygen. This is evident from its ability to grow optimally in environments with low oxygen levels, such as the gastrointestinal tract. Furthermore, Parabacteroides goldsteinii dnLKV18 has been isolated from various environmental samples, including stool, dental plaques, and skin lesions, highlighting its diverse habitat range. The microbe's ability to tolerate a wide range of environmental conditions, including temperature, pH, and oxygen levels, makes it a resilient and adaptable species. This microbe has been linked to various physiological and pathological processes, including the breakdown of complex carbohydrates, the production of short-chain fatty acids, and the modulation of host immune responses. As a result, Parabacteroides goldsteinii dnLKV18 has become a popular subject for research in fields such as microbiome analysis, gut health, and infectious disease. Despite its seemingly ordinary characteristics, Parabacteroides goldsteinii dnLKV18 has emerged as a key player in understanding the complex dynamics of microbial communities and their interactions with their host environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides goldsteinii Negative Anaerobe 1235789 ASSQ00000000.1 Bac0005342 Paenibacillus barengoltzii G22 "Paenibacillus barengoltzii G22 is a thermophilic, chemoorganoheterotrophic microbe that thrives in temperatures ranging from 45°C to 65°C, making it an extremophile. This bacterium derives its energy from the oxidation of organic compounds, specifically carbohydrates, proteins, and fats, which it uses as a source of carbon and energy. Paenibacillus barengoltzii G22 produces its energy through aerobic respiration, utilizing oxygen as its terminal electron acceptor. From a Gram stain perspective, Paenibacillus barengoltzii G22 is a gram-positive bacterium, characterized by its thick peptidoglycan layer in its cell wall. Its shape is rod-shaped, typically coccoid or slightly curved, with a length of approximately 1.5-3.5 μm and a width of 0.5-1.5 μm. This microbe can be found in various body sites across all species, including the human gut, skin, and respiratory tract, where it coexists with other microorganisms. Paenibacillus barengoltzii G22 prefers aerobic conditions and is classified as an obligate aerobe, meaning it requires the presence of oxygen to survive. In addition to its unique characteristics, Paenibacillus barengoltzii G22 has been found to be involved in the degradation of complex organic matter, particularly cellulose and chitin, which are found in plant cell walls and exoskeletons of insects and crustaceans. Its ability to break down these recalcitrant compounds makes it a key player in ecosystems where organic matter is abundant. Furthermore, research has shown that this microbe can produce bioactive compounds with potential applications in medicine and industry. Its enzymes have been found to exhibit catalytic activity, suggesting potential biotechnological applications. Overall, Paenibacillus barengoltzii G22 is a remarkable microbe that plays a crucial role in the decomposition of organic matter and has significant potential for biotechnological applications." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus barengoltzii Positive Rod aerobic 37 mesophilic spore-forming 1235795 ASSZ00000000.1 Bac0005343 Firmicutes bacterium M10-2 Bacillati Bacillota Firmicutes bacterium M10-2 1235796 ASTB00000000.1 Bac0005344 Oscillibacter sp. 1-3 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Oscillibacter sp. 1-3 1235797 ASTC00000000.1 Bac0005345 Dorea sp. 5-2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea sp. 5-2 1235798 ASTD00000000.1 Bac0005346 Lachnospiraceae bacterium MD308 str. 3-2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium MD308 1235799 ASTE00000000.1 Bac0005347 Eubacterium plexicaudatum ASF492 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium plexicaudatum 1235802 AQFT00000000.2 Bac0005348 Prevotella disiens JCM 6334 = ATCC 29426 "Prevotella disiens JCM 6334 = ATCC 29426 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments, primarily classified as a chemoheterotroph. This microbe is mesophilic, preferring moderate temperatures for optimal growth. Prevotella disiens is typically found in various body sites, including the human oral cavity, gastrointestinal tract, and urogenital tract, indicating its role in both health and disease. The Gram-negative characteristic of Prevotella disiens is significant as it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contribute to its pathogenicity and ability to evade host immune responses. Its rod-shaped morphology allows for efficient locomotion in viscous environments, facilitating its colonization of mucosal surfaces. As an obligate anaerobe, Prevotella disiens requires environments devoid of oxygen for survival. This anaerobic nature means it plays crucial roles in gut microbiota, participating in the fermentation of complex carbohydrates and contributing to digestive processes. Being a chemoheterotroph, it relies on organic compounds from its environment as sources of carbon and energy, which underscores its nutritional adaptability. Prevotella disiens has been linked to various health conditions, including periodontal disease and other dysbiosis-related disorders. Its prevalence in the oral and gut microbiomes reflects its potential influence on systemic health. Recent studies have suggested that an imbalance in Prevotella species may be associated with metabolic disorders, showcasing its importance in understanding human microbiome dynamics and their implications for overall health. Additionally, ongoing research explores the potential of Prevotella disiens in developing probiotic therapies aimed at restoring gut health and microbial balance." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella disiens Negative Anaerobe 1235811 AWUY00000000.1 Bac0005349 Bacteroides pyogenes JCM 10003 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides pyogenes 1235813 BAIU00000000.1 Bac0005350 Mesotoga infera "Mesotoga infera is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 45.0°C. This microbe is notably non-spore-forming, which suggests a reliance on specific environmental conditions for survival and propagation rather than the ability to withstand extreme stressors typically associated with sporulation. ↵↵The anaerobic metabolism of M. infera indicates its potential role in the degradation of organic matter in environments devoid of oxygen, such as deep-sea sediments or certain types of bioreactors. The optimal growth temperature of 45.0°C aligns with habitats that are thermally enriched, often found in geothermal areas or in association with thermophilic microbial communities. ↵↵Understanding the metabolic pathways of M. infera can provide insights into its ecological niche, particularly in the context of nutrient cycling in anaerobic habitats. The ability of this organism to thrive at elevated temperatures may also suggest a unique adaptation mechanism, allowing it to outcompete other microbial species in hot, low-oxygen environments. Overall, Mesotoga infera exemplifies the diverse adaptations of microorganisms to specific ecological niches, highlighting the intricate relationships within microbial communities and their environments." Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga infera Gram-negative rod non-motile anaerobic 45 thermophilic non-spore-forming 1236046 NZ_LS974202.1 Bac0005351 Halopelagius longus str. BC12-B1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopelagius Halopelagius longus 1236180 QQST00000000.1 Bac0005352 Bacillus stratosphericus LAMA 585 "Bacillus stratosphericus LAMA 585 is a rod-shaped bacterium that exhibits characteristics typical of the Bacillus genus. This organism is notable for its resilience and adaptability, characteristics commonly associated with members of this group. As a rod-shaped bacterium, B. stratosphericus LAMA 585 may possess structural features that enhance its survival in various environments, potentially contributing to its ecological niche.↵↵The rod shape of B. stratosphericus LAMA 585 suggests that it may be well-suited for certain types of motility and nutrient acquisition strategies that are advantageous in competitive environments. This morphological trait can influence its interactions with surrounding microorganisms and its ability to colonize diverse habitats. While specific ecological roles or interactions of this strain have not been detailed, the robust nature of Bacillus species often indicates a capacity for resilience in challenging conditions, such as those found in extreme environments.↵↵Overall, the unique shape of Bacillus stratosphericus LAMA 585 highlights its potential adaptability, suggesting that it may play a significant role in biogeochemical cycles or in the decomposition of organic matter in its environment. Understanding the traits of this bacterium can provide insights into the ecological dynamics of microbial communities, particularly in systems where rod-shaped bacteria are prevalent." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus stratosphericus Rod 1236481 APAS00000000.1 Bac0005353 Flavobacterium aquaticum str. CGMCC 1.12398 "Flavobacterium aquaticum strain CGMCC 1.12398 is a Gram-negative, rod-shaped bacterium. This classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic typical of Gram-negative microorganisms. The rod shape is indicative of its morphologic structure, which can influence its motility and environmental interactions.↵↵As a member of the Flavobacterium genus, this strain may exhibit traits common to this group, such as the ability to degrade complex organic materials, although specific metabolic capabilities are not detailed in the provided information. The Gram-negative nature of Flavobacterium aquaticum str. CGMCC 1.12398 may also suggest potential implications for its survival in diverse environments, as it can be more resistant to certain antibiotics and chemical agents compared to Gram-positive bacteria.↵↵The ecological role of Flavobacterium species is often associated with aquatic environments, where they can contribute to the decomposition of organic matter and nutrient cycling. Given the strain's designation, it may be particularly relevant in freshwater ecosystems, potentially playing a role in maintaining the balance of microbial communities and the overall health of aquatic habitats.↵↵In summary, Flavobacterium aquaticum str. CGMCC 1.12398's Gram-negative, rod-shaped characteristics position it within a group of bacteria that are essential for nutrient recycling in aquatic environments, highlighting its possible significance in ecological dynamics." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aquaticum Gram-negative rod non-motile 1236486 QLMI00000000.1 Bac0005354 Prevotella fusca JCM 17724 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella fusca anaerobic 1236517 NZ_CP012075.1 Bac0005355 Prevotella scopos JCM 17725 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella scopos 1236518 NZ_CP016204.1 Bac0005356 Mycobacterium bohemicum DSM 44277 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium bohemicum 1236609 CSTD00000000.1 Bac0005357 Candidatus Methanomethylophilus alvi Mx1201 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus alvi No 1 Chemoheterotroph Mesophilic Host Gut Nonsporulating 1236689 NC_020913.1 Bac0005358 Hymenobacter perfusus str. LMG 26000 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter perfusus 1236770 RWIU00000000.1 Bac0005359 Wolbachia endosymbiont of Drosophila simulans wNo Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Drosophila simulans 1236908 NC_021084.1 Bac0005360 Wolbachia endosymbiont of Drosophila simulans wHa Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Drosophila simulans 1236909 NC_021089.1 Bac0005361 Stenotrophomonas pictorum JCM 9942 "Stenotrophomonas pictorum JCM 9942 is a Gram-negative, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. This microbe is part of the broader Stenotrophomonas genus, which is known for its diverse metabolic capabilities and environmental resilience. The aerobic nature of S. pictorum suggests that it relies on oxygen for its respiratory metabolism, which may confer advantages in various ecological niches where oxygen is readily available.↵↵The Gram-negative cell wall structure of S. pictorum typically comprises a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural characteristic can influence its interaction with other microorganisms and its overall survivability in different habitats, including soil and aquatic environments. ↵↵While the specific ecological roles of S. pictorum JCM 9942 are not detailed in the available data, Gram-negative aerobic bacteria like this species are often involved in nutrient cycling and can contribute to the degradation of organic materials in their ecosystems. Their metabolic versatility may also enable them to adapt to fluctuating environmental conditions, which is crucial for survival in diverse habitats.↵↵Given these traits, S. pictorum JCM 9942 may play a significant role in biogeochemical processes, particularly in environments where aerobic conditions prevail, contributing to the maintenance of ecological balance and nutrient cycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas pictorum Gram-negative aerobic 1236960 LLXS00000000.1 Bac0005362 Alkalihalobacillus hemicellulosilyticus JCM 9152 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halalkalibacter Halalkalibacter hemicellulosilyticus 1236971 BAUU00000000.1 Bac0005363 Paenibacillus sp. JCM 10914 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. JCM 10914 1236974 BAUO00000000.1 Bac0005364 Candidatus Nitrososphaera gargensis Ga9.2 "Candidatus Nitrososphaera gargensis Ga9.2 is a microbe that exhibits a gram-negative stain, has a spherical shape, thrives in thermophilic temperatures, and is classified as a chemolithoautotroph, capable of inhabiting various body sites across all possible species, and is an obligate aerobe. The gram-negative stain is a result of its unique cell wall composition, which lacks a thick peptidoglycan layer. Its spherical shape allows for maximum surface area, enabling efficient exchange of nutrients and waste products. As a thermophilic microbe, Candidatus Nitrososphaera gargensis Ga9.2 has adapted to survive in high-temperature environments, making it an ideal candidate for studying thermophilic metabolic processes. As a chemolithoautotroph, this microbe derives its energy from the oxidation of inorganic compounds, such as ammonia, and uses carbon dioxide as its primary carbon source. This metabolic pathway allows it to thrive in environments with limited organic matter. Candidatus Nitrososphaera gargensis Ga9.2 can be found in various environments, including soil, water, and even the human body, where it can inhabit diverse body sites. Its obligate aerobe nature requires it to be present in oxygen-rich environments, which is essential for its energy-producing metabolic reactions. Candidatus Nitrososphaera gargensis Ga9.2 plays a crucial role in the nitrogen cycle, contributing to the oxidation of ammonia to nitrite, a vital step in the process. Its unique metabolic capabilities and adaptability to diverse environments make it a fascinating microbe to study. Researchers have discovered that this microbe has the ability to form symbiotic relationships with other microorganisms, enhancing its survival and metabolic capabilities in various ecological niches." Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera gargensis Uncharacterized Aerobe 1237085 NC_018719.1 Bac0005365 Haloquadratum walsbyi J07HQW2 "Haloquadratum walsbyi J07HQW2 is a square-shaped, phototrophic microorganism characterized by its unique single-cell arrangement. This microbe thrives in aquatic environments, where it utilizes light as its primary energy source for metabolism. ↵↵The square morphology of Haloquadratum walsbyi is notable, as it distinguishes this organism from many other microbial forms typically observed in aquatic habitats. Its adaptation to phototrophy suggests a dependence on sunlight, which may allow it to exploit specific niches within these ecosystems where light penetration is optimal.↵↵Understanding the ecological role of Haloquadratum walsbyi J07HQW2 can provide insights into microbial dynamics in saline or hypersaline aquatic environments, particularly regarding how square-shaped cells might interact within microbial communities or affect nutrient cycling. The unique shape and arrangement may also influence its buoyancy and light absorption capabilities, potentially impacting its distribution and abundance in stratified water columns. Overall, the study of this organism contributes to a broader understanding of microbial diversity and adaptation in extreme aquatic ecosystems." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloquadratum Haloquadratum walsbyi SquareShaped No 1 1 Phototroph Mesophilic Aquatic Free living Singles 1238425 ARPY00000000.1 Bac0005366 Halonotius sp. J07HN6 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius sp. J07HN6 1238427 ARQA00000000.1 Bac0005367 Sodalis praecaptivus str. HS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bruguierivoracaceae Sodalis Sodalis praecaptivus 1239307 NZ_CP006569.1 Bac0005368 Streptococcus mitis 13/39 "Streptococcus mitis 13/39 is a Gram-positive cocci bacterium characterized by its arrangement in chains or pairs. This strain, like others in its genus, is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic conditions. Predominantly found in host-associated habitats, S. mitis 13/39 is often part of the normal flora of the human oral cavity and respiratory tract, where it plays a role in microbial community dynamics.↵↵This strain’s facultative anaerobic nature suggests it can adapt to varying oxygen levels, potentially influencing its interactions with other microbial species in its niche. The ability to exist in chains or pairs may facilitate its colonization and persistence within host environments, contributing to its ecological role. The presence of S. mitis in diverse host-associated habitats highlights its importance in maintaining microbial balance and may provide insights into its metabolic adaptations and interactions within the microbiome. Understanding these traits can further elucidate the contributions of S. mitis 13/39 to host health and the complex dynamics of microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1239793 AQTU00000000.1 Bac0005369 Dickeya solani RNS 08.23.3.1.A Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya solani 1240086 NZ_CP016928.1 Bac0005370 Streptomyces natalensis ATCC 27448 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces natalensis 1240678 JRKI00000000.1 Bac0005371 Leptospira kirschneri serovar Bulgarica str. Nikolaevo Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira kirschneri 1240687 ANCE00000000.1 Bac0005372 Campylobacter fetus subsp. fetus 04/554 "Campylobacter fetus subsp. fetus 04/554 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This microbe is microaerophilic, indicating that it requires reduced levels of oxygen for optimal growth, a trait that is typical for many members of the Campylobacter genus. C. fetus subsp. fetus 04/554 is host-associated, suggesting a close relationship with a specific host organism, which may influence its ecological niche and interactions within the host environment.↵↵The microaerophilic nature of C. fetus subsp. fetus 04/554 implies that it may thrive in environments where oxygen levels are lower than atmospheric concentrations, such as the intestinal tracts of certain animals. Its spirilla shape and unique cell arrangement could play a role in its motility and colonization capabilities within the host. Understanding the habitat preferences and growth requirements of this strain can contribute to a broader comprehension of its ecological role and potential interactions with the host microbiome.↵↵In conclusion, the specific traits of C. fetus subsp. fetus 04/554 suggest that it may occupy a specialized ecological niche within its host, possibly influencing host physiology and microbiota dynamics in a manner that reflects the adaptive strategies of microaerophilic organisms." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus Negative Spirilla Yes 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1240980 NZ_CP008809.1 Bac0005373 Chryseobacterium nakagawai Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium nakagawai 1241982 NZ_LR134386.1 Bac0005374 Salmonella enterica subsp. enterica serovar India str. SA20085604 "Salmonella enterica subsp. enterica serovar India str. SA20085604 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the tendency to form chains or exist as singles. This strain optimally thrives at 37.0 °C, which aligns with the typical body temperature of mammalian hosts, indicating its ecological adaptation to host-associated environments. As a chemoorganotroph, this microbe utilizes organic compounds as an energy source, which further suggests its dependence on host-derived nutrients for growth and reproduction.↵↵The microaerophilic nature of Salmonella enterica serovar India str. SA20085604 indicates that it requires lower levels of oxygen than are present in the atmosphere, a trait that could influence its survival and proliferation within specific niches in host organisms. The combination of these traits emphasizes the bacterium’s potential role in the intricate interactions within host-associated microbiomes, where it may contribute to or compete with other microbial inhabitants. Understanding the metabolic and ecological requirements of this strain could provide insights into its behavior in various host environments and its potential role in microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1242098 NZ_CP022015.1 Bac0005375 Melghirimyces profundicolus str. DSM 45787 "Melghirimyces profundicolus strain DSM 45787 is a Gram-positive, aerobic bacterium that demonstrates the ability to form spores, enabling it to withstand adverse environmental conditions. This strain thrives optimally at a temperature of 45.0°C, suggesting a preference for thermophilic environments. The ability to sporulate is a significant adaptive trait, allowing it to survive periods of nutrient deficiency or harsh conditions while remaining viable. ↵↵While specific ecological roles and interactions of Melghirimyces profundicolus remain to be extensively characterized, the combination of its aerobic metabolism and thermophilic nature may indicate a potential association with hot, oxygen-rich environments such as geothermal soils or thermal springs. These habitats are often rich in organic matter, providing a substrate for microbial life and facilitating intricate ecological interactions. The capacity for spore formation may also imply a role in nutrient cycling within such ecosystems, highlighting the potential significance of this strain in maintaining microbial diversity and ecosystem stability in high-temperature environments." Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Melghirimyces Melghirimyces profundicolus Gram-positive aerobic 45 thermophilic spore-forming 1242148 QBKR00000000.1 Bac0005376 Acinetobacter johnsonii XBB1 "Acinetobacter johnsonii XBB1 is a Gram-negative bacterium characterized by its strict aerobic metabolic requirements. This microbe is part of the Acinetobacter genus, which is known for its environmental versatility and adaptability. A. johnsonii XBB1 thrives in oxygen-rich environments, indicating its reliance on aerobic respiration for energy production. ↵↵The Gram-negative classification of A. johnsonii XBB1 suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various environmental conditions. This structural feature is common among bacteria that are often found in diverse habitats, including soil and water.↵↵While its specific ecological roles and interactions within microbial communities remain to be fully elucidated, A. johnsonii XBB1's aerobic nature implies potential involvement in biogeochemical cycles, particularly those related to the degradation of organic matter in oxygenated environments. This could position it as a player in nutrient cycling and microbial dynamics in habitats where aerobic processes dominate. Further research into its metabolic capabilities and interactions with other microorganisms could shed light on its ecological significance and potential applications in biotechnology or environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe 1242245 NZ_CP010356.1 Bac0005377 Litoreibacter halocynthiae "Litoreibacter halocynthiae is a Gram-negative, non-spore-forming spherical bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. This microbe is part of the diverse microbial communities found in marine environments, where it potentially plays a role in nutrient cycling and interactions with other microorganisms.↵↵The spherical morphology of L. halocynthiae suggests adaptations that may enhance its survival in a variety of aquatic habitats. Given its aerobic nature, this organism likely utilizes oxygen for metabolic processes, influencing its ecological niche and interactions with other aerobic microbes in its environment. While specific ecological roles and interactions remain to be fully elucidated, the presence of L. halocynthiae in marine ecosystems may indicate its involvement in the degradation of organic matter or in the biogeochemical cycling of elements.↵↵Further research could provide insights into the biotechnological potential of L. halocynthiae, particularly in applications related to marine biotechnology or bioremediation, where understanding its metabolic pathways and interactions with other organisms could reveal new avenues for exploration." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Litoreibacter Litoreibacter halocynthiae Gram-negative sphere non-motile aerobic 25 mesophilic non-spore-forming 1242689 SOBH00000000.1 Bac0005378 Cystobacter fuscus DSM 2262 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus 1242864 ANAH00000000.2 Bac0005379 Campylobacter concisus UNSW2 "Campylobacter concisus UNSW2 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or occur as singles. This organism is associated with host environments, indicating a potential symbiotic or commensal relationship with specific hosts. The microaerophilic nature of C. concisus UNSW2 suggests that it thrives in oxygen-limited conditions, which is typical for members of the Campylobacter genus, often found in the gastrointestinal tracts of animals and humans. ↵↵Due to its unique morphological and physiological characteristics, C. concisus UNSW2 may play a significant role in the microbial ecology of its host, potentially influencing gut health and the balance of the microbiome. Its presence in host-associated habitats highlights the importance of understanding the interactions between this bacterium and its host environment, particularly in relation to nutrient cycling and microbial community dynamics. Further research into C. concisus UNSW2 could provide insights into its specific ecological functions within host-associated ecosystems, as well as its potential contributions to the overall health of its host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1242965 ANNJ00000000.1 Bac0005380 Campylobacter concisus UNSW1 "Campylobacter concisus UNSW1 is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as single cells. This microbe is classified as microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which aligns with its host-associated habitat. ↵↵C. concisus UNSW1 is notable for its adaptability to host-related conditions, potentially indicating a specific niche within the gastrointestinal tract of its host organisms. The microaerophilic requirement suggests that it may play a role in the complex microbial communities found in such environments, where oxygen levels are often lower than atmospheric conditions. ↵↵Understanding the specific interactions of C. concisus UNSW1 within its host environment may provide insights into its ecological role, including potential contributions to gut microbiome dynamics and overall host health. Further research into this bacterium could reveal important information about its physiological adaptations and interactions with other microbial species in host-associated habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1242967 ANNF00000000.1 Bac0005381 Campylobacter concisus UNSWCS "Campylobacter concisus UNSWCS is a Gram-negative microbe characterized by its spirilla shape and tendency to form chains or exist as single cells. This bacterium is classified as microaerophilic, indicating that it requires reduced levels of oxygen for optimal growth, a trait that aligns with its host-associated habitat. The specific ecological niche of Campylobacter concisus suggests a potential adaptation to environments where oxygen levels are limited, such as the gastrointestinal tracts of various hosts.↵↵The microaerophilic nature of C. concisus may influence its metabolic pathways and ecological interactions within host organisms. Its spiral morphology is typical of the Campylobacter genus, which is known for its motility and ability to navigate viscous environments. The presence of this organism in host-associated habitats might indicate its role in the complex microbial communities found within these ecosystems, potentially contributing to host-microbe interactions that are yet to be fully understood.↵↵Overall, the unique combination of its Gram-negative characteristics, morphological traits, and microaerophilic growth requirements positions Campylobacter concisus UNSWCS as an intriguing subject for further investigation, particularly in relation to its potential ecological roles and interactions within host environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1242968 ANNG00000000.1 Bac0005382 Campylobacter concisus ATCC 51562 "Campylobacter concisus ATCC 51562 is a Gram-negative bacterium characterized by its spirilla shape and the tendency to form chains or exist as singles. This microorganism is classified as microaerophilic, indicating that it requires reduced levels of oxygen for optimal growth, which aligns with its adaptation to host-associated environments. The specific ecological niche of C. concisus suggests a close association with animal or human hosts, where it may occupy specific anatomical sites conducive to its survival and proliferation.↵↵The microaerophilic nature of C. concisus may confer advantages in its host-associated habitat, where oxygen levels are typically lower than atmospheric concentrations. This trait may influence its interactions with the host's microbiota and immune responses, potentially impacting its ecological role and significance within the host environment. Understanding the behavior and physiology of Campylobacter concisus ATCC 51562 in relation to its microaerophilic requirement could provide insights into its adaptation strategies and functional roles in various ecological settings, particularly in the context of the gastrointestinal tract where such conditions are prevalent." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1242969 ANNI00000000.1 Bac0005383 Ehrlichia minasensis str. B11 "Ehrlichia minasensis str. B11 is a Gram-negative, ovoid-shaped bacterium characterized by its unique morphology and cellular structure. As a member of the genus Ehrlichia, this strain is notable for its distinctive cell wall composition, which is typical of Gram-negative bacteria, featuring a thin peptidoglycan layer surrounded by an outer membrane. The ovoid shape of E. minasensis str. B11 may influence its interactions with host cells and the environment, although specific ecological roles and interactions have not been elaborated in detail.↵↵Research on members of the Ehrlichia genus often highlights their obligate intracellular lifestyle, typically residing within host cells, particularly within leukocytes. While the pathogenicity of this specific strain remains uncharacterized, the genus itself includes species known to be associated with various mammalian hosts, indicating potential implications for animal health and possibly human health as well.↵↵The ovoid morphology of E. minasensis str. B11 may suggest adaptations to its intracellular environment, allowing for efficient entry into host cells or evasion of host immune responses. Furthermore, understanding the traits of this strain may provide insights into the evolutionary mechanisms of intracellular bacteria, particularly how structural features contribute to their survival and reproduction within host organisms. This highlights the significance of studying such microorganisms to unravel their ecological roles and evolutionary strategies." Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia minasensis Gram-negative ovoid 1242993 QOHL00000000.1 Bac0005384 Campylobacter concisus ATCC 51561 "Campylobacter concisus ATCC 51561 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and distinct cell arrangement, which can be observed as single cells or in chains. This species is host-associated, indicating a close relationship with its host organisms, though specific hosts have not been detailed in the trait data provided. ↵↵As a microaerophilic organism, C. concisus ATCC 51561 thrives in environments with reduced oxygen levels, which may influence its ecological niche within host-associated habitats. The spiral morphology of this bacterium may contribute to its motility and ability to colonize various environments, potentially allowing it to navigate the complex microenvironments found in the gastrointestinal tracts of its hosts.↵↵The adaptation of C. concisus to microaerophilic conditions and its spirilla shape suggest a specialized evolutionary strategy, which may enhance its survival and persistence in specific ecological niches where oxygen concentration is limited. Understanding the ecological roles of such bacteria could provide insights into host-microbe interactions and the overall dynamics of microbial communities within host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1243032 ANNH00000000.1 Bac0005385 Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K "Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains as well as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for warm-blooded hosts. As a chemoorganotroph, it utilizes organic compounds as its primary energy source, which is typical for bacteria associated with host environments. ↵↵Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K is classified as microaerophilic, suggesting that it requires oxygen for growth but at lower levels than that found in the atmosphere. This trait aligns with its habitat, which is host-associated, where oxygen levels can fluctuate based on the host's physiological state.↵↵Understanding the growth conditions and metabolic characteristics of this strain can provide insights into its ecological role within host organisms. The microaerophilic nature and optimal temperature suggest that this bacterium could play a significant role in the microbial dynamics of the gastrointestinal tract of its hosts, potentially influencing nutrient cycling and host health. Further exploration of its interactions within host environments may reveal additional ecological relationships pertinent to both microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1243602 NZ_CP022141.1 Bac0005386 Salmonella enterica subsp. diarizonae serovar 59:z10:- "Salmonella enterica subsp. diarizonae serovar 59:z10:- is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This organism exhibits an optimal growth temperature of 37.0°C, suggesting that it thrives in conditions similar to those found within host organisms. As a chemoorganotroph, it derives energy from organic compounds, which likely facilitates its survival and replication in host-associated environments.↵↵The microaerophilic oxygen requirement indicates that Salmonella enterica subsp. diarizonae serovar 59:z10:- occupies niches where oxygen levels are lower than atmospheric concentrations, possibly within the gastrointestinal tracts of animals or other host-associated habitats. This adaptation may contribute to its ecological role in the microbiome, interacting with both host and other microbial communities.↵↵Overall, the combination of its unique morphological features and metabolic capabilities suggests that this serovar may play a specialized role in the complex dynamics of host-associated microbiota, potentially influencing host health and microbial ecology. Further study into its interactions within these environments could provide valuable insights into its ecological significance and potential implications for disease management." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1243609 CP030027.1 Bac0005387 Campylobacter showae CSUNSWCD "Campylobacter showae CSUNSWCD is a gram-negative, spiral-shaped bacterium that thrives within a temperature range of 37°C and is classified as a microaerophile. This microbe is a chemoheterotroph, meaning it relies on organic compounds for growth and energy. C. showae is primarily found in the gastrointestinal tracts of various animals, particularly birds, and occasionally in mammals, contributing to the rich biodiversity of gut microbiota. The gram-negative nature of C. showae is indicative of its cell wall composition, which consists of a thin peptidoglycan layer sandwiched between two membranes. This structural arrangement not only provides resilience against environmental stresses but also influences the bacterium's pathogenic potential. Its spiral shape contributes to its motility, allowing it to efficiently navigate through viscous environments, such as mucus lining the gut. As a microaerophile, C. showae exhibits a unique oxygen dependency; it thrives in environments with reduced oxygen levels, which is typical of the intestinal microbiome. Its chemoheterotrophic lifestyle enables it to derive energy from organic substrates, particularly amino acids and fatty acids, enhancing its adaptability to various ecological niches. Notably, C. showae has been studied for its role in gastrointestinal diseases. It has been associated with various enteric infections in humans and animals, leading to gastroenteritis characterized by diarrhea and abdominal cramping. Beyond its pathogenic potential, this microbe contributes to the understanding of microbial interactions within the gut and the broader implications for health and disease. Its presence serves as an indicator of fecal contamination in environmental samples, making C. showae an essential organism in environmental microbiology and public health monitoring." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae Negative Aerobe 1244083 AMZQ00000000.1 Bac0005388 Enterococcus faecium OC2A-1 "Enterococcus faecium OC2A-1 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic characteristics. This means that it can thrive in both aerobic and anaerobic environments, allowing it to adapt to various ecological niches. As a member of the Enterococcus genus, E. faecium OC2A-1 shares common traits with other species in this group, including its ability to grow in diverse conditions, which may be advantageous in fluctuating environments.↵↵The cocci morphology of E. faecium OC2A-1 contributes to its potential for forming aggregates or biofilms, which can enhance its survival and resilience in complex ecosystems. The facultative anaerobic nature of this strain implies that it can utilize oxygen when available but can also metabolize substrates anaerobically, a trait that may facilitate its growth in environments where oxygen levels are variable or limited.↵↵The adaptability of Enterococcus faecium OC2A-1 suggests that it could play a role in nutrient cycling within its habitat, particularly in ecosystems where organic matter is decomposed under varying oxygen conditions. This metabolic versatility indicates potential interactions with other microorganisms and the surrounding environment, highlighting the ecological significance of E. faecium OC2A-1 in maintaining microbial diversity and function." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1244151 ATIW00000000.1 Bac0005389 Campylobacter iguaniorum str. 1485E Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter iguaniorum microaerophile 1244531 NZ_CP009044.1 Bac0005390 Bradyrhizobium oligotrophicum S58 "Bradyrhizobium oligotrophicum S58 is a Gram-negative bacterium characterized by its aerobic metabolism and optimal growth at 37.0°C. This microbe is part of a well-known genus associated with nitrogen fixation, often found in association with leguminous plants. The Gram-negative nature of B. oligotrophicum S58 suggests a complex cell envelope structure, including an outer membrane that may contribute to its environmental adaptability. ↵↵Given its aerobic requirement, this strain thrives in oxygen-rich environments, which may influence its distribution and ecological roles in nitrogen cycling. The optimal growth temperature of 37.0°C indicates a preference for warm environments, potentially aligning with the growth conditions of its plant hosts. ↵↵In terms of ecological significance, B. oligotrophicum S58 may play a crucial role in promoting soil fertility through its nitrogen-fixing capabilities, thereby enhancing plant growth and contributing to sustainable agricultural practices. The symbiotic relationship between this bacterium and leguminous plants underscores its importance not only in natural ecosystems but also in agroecosystems where nitrogen availability is critical for crop production. This bacterium exemplifies the intricate interactions between microorganisms and their plant hosts, highlighting the vital role of microbial communities in nutrient cycling and soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium oligotrophicum Gram-negative aerobic 37 mesophilic 1245469 NC_020453.1 Bac0005391 Metapseudomonas resinovorans NBRC 106553 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Metapseudomonas Metapseudomonas resinovorans 1245471 NC_021499.1 Bac0005392 Arthrobacter crystallopoietes BAB-32 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Crystallibacter Crystallibacter crystallopoietes 29 mesophilic 1246476 ANPE00000000.2 Bac0005393 Neisseria gonorrhoeae NG-k51.05 "Neisseria gonorrhoeae NG-k51.05 is a Gram-negative coccus that typically exists as single cells or in pairs. This microbe thrives in host-associated environments, which is consistent with its role in human infections. N. gonorrhoeae NG-k51.05 has an optimal growth temperature of 35.0°C, reflecting its adaptation to the human body, where it is often found in mucosal surfaces. As an aerobe, this strain requires oxygen for its metabolic processes, further aligning with its ecological niche in the oxygen-rich environment of the host. ↵↵The morphology and growth conditions of N. gonorrhoeae NG-k51.05 suggest a specialized adaptation to the human host, potentially influencing its interactions with the host immune system. This strain exemplifies the specific environmental requirements and cellular characteristics that define its genus, providing insights into the evolutionary pressures faced by pathogenic microbes in relation to their habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 1247414 NZ_CP003974.1 Bac0005394 Flagellimonas pacifica Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas pacifica 1247520 OBEH00000000.1 Bac0005395 Advenella mimigardefordensis DPN7 "Advenella mimigardefordensis DPN7 is a Gram-negative, ovoid-shaped bacterium that exhibits aerobic respiration and is non-spore-forming. This microbe thrives at an optimal temperature of 32.0 °C, suggesting a preference for moderate environmental conditions. The Gram-negative nature of A. mimigardefordensis DPN7 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this bacterial group, which may contribute to its resilience in various habitats.↵↵The aerobic requirement of this organism implies that it relies on oxygen for growth and energy production, positioning it within environments rich in oxygen availability. Its morphological and physiological traits suggest an adaptation to specific ecological niches, which may include environments such as soil or aquatic systems where organic matter is present and oxygen is readily available.↵↵Understanding the traits of Advenella mimigardefordensis DPN7 not only enriches our knowledge of microbial diversity but also highlights the potential for this organism to play a role in biogeochemical cycles, particularly in the degradation of organic compounds in oxygenated environments. Further research could elucidate its specific ecological interactions and functional contributions within its habitat." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Advenella Advenella mimigardefordensis Gram-negative ovoid aerobic 32 mesophilic non-spore-forming 1247726 NZ_CP003916.1 Bac0005396 Brevibacillus sp. SKDU10 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus sp. SKDU10 1247872 LSSO00000000.1 Bac0005397 Photobacterium leiognathi lrivu.4.1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium leiognathi 1248232 BANQ00000000.1 Bac0005398 Helicobacter pylori OK310 "Helicobacter pylori OK310 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and typically exists as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, suggesting a close relationship with warm-blooded organisms. ↵↵H. pylori OK310's microaerophilic nature indicates that it requires reduced levels of oxygen for growth, a trait that may be advantageous for colonization in the gastric environment, where oxygen concentrations are lower than in the atmosphere. The spiral morphology of this organism may facilitate its motility in the viscous gastric mucus, enhancing its ability to navigate the acidic environment of the stomach.↵↵The ecological role of H. pylori OK310 may extend beyond mere survival in the gastrointestinal tract; its adaptation to a host-associated lifestyle implies potential interactions with the host's immune system and gut microbiota. Understanding the specific ecological niche and functional dynamics of H. pylori OK310 could provide insights into its role in the host's gastric ecology and overall health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1248726 NC_020509.1 Bac0005399 endosymbiont of unidentified scaly snail isolate Monju Pseudomonadati Pseudomonadota Gammaproteobacteria endosymbiont of unidentified scaly snail isolate Monju 1248727 NZ_AP012978.1 Bac0005400 Escherichia coli O145:H28 str. RM12581 "Escherichia coli O145:H28 str. RM12581 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli O145:H28 str. RM12581 possesses the metabolic flexibility to utilize both aerobic and anaerobic respiration, allowing it to survive in various microenvironments within its host.↵↵The ability to grow in diverse oxygen conditions suggests a versatile ecological role within the host's microbiome, potentially contributing to nutrient cycling and maintaining gut homeostasis. The physiological traits of this strain may offer insights into its interactions within host-associated environments, emphasizing the importance of understanding microbial communities in health and disease contexts. As research continues to uncover the functions and dynamics of such bacteria, E. coli O145:H28 str. RM12581 may represent a valuable model for studying host-microbe interactions in broader ecological settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1248823 NZ_CP007136.1 Bac0005401 Burkholderia pseudomallei MSHR2543 "Burkholderia pseudomallei MSHR2543 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits strict aerobic metabolism. This strain is part of the Burkholderia genus, which is known for its environmental versatility and ability to survive in diverse ecosystems.↵↵As an aerobic organism, B. pseudomallei MSHR2543 requires oxygen for growth, which may influence its distribution and ecological interactions within soil and water environments. The bacterium's rod shape is characteristic of many environmental bacteria, allowing for efficient nutrient uptake and motility in its terrestrial habitat. ↵↵Understanding the ecological niche of B. pseudomallei MSHR2543 is crucial, as its ability to inhabit soil environments can play a significant role in nutrient cycling and microbial community dynamics. The presence of such aerobe in terrestrial ecosystems underscores the importance of oxygen availability for microbial life and the potential for interactions with other soil-dwelling organisms. Further research into its ecological interactions may illuminate the roles it plays in soil health and environmental processes." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 1249472 NZ_CP009477.1 Bac0005402 Cupriavidus sp. HMR-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. HMR-1 1249621 ANKP00000000.1 Bac0005403 Imhoffiella purpurea str. AK35 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Imhoffiella Imhoffiella purpurea 1249627 AONC00000000.1 Bac0005404 Christiangramia echinicola Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia echinicola 1250231 NZ_LT629745.1 Bac0005405 Salipiger abyssi str. JLT2014 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger abyssi 1250539 NZ_CP015095.1 Bac0005406 Sorangium cellulosum So0157-2 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 1254432 NC_021658.1 Bac0005407 Bifidobacterium thermophilum RBL67 "Bifidobacterium thermophilum RBL67 is a heat-loving, Gram-positive bacterium that thrives in temperatures between 55°C and 65°C, placing it in the Thermophilic temperature preference category. Its metabolism is classified as a Heterotroph, meaning it obtains its energy by breaking down organic compounds. Specifically, it produces energy through fermentation, making it a type of chemoheterotroph. This bacterium is a non-motile, rod-shaped microbe, typically measuring 0.5-1.5 micrometers in length. As a Gram-positive bacterium, it has a thick peptidoglycan layer in its cell wall, which gives it a positive reaction when stained with Gram's stain. This characteristic, along with its shape, allows it to be easily identified under a microscope. Bifidobacterium thermophilum RBL67 can be found in various environments, including the gastrointestinal tracts of animals, as well as in soil and plant surfaces. Its ability to thrive in these diverse settings is due to its tolerance of varying oxygen levels. Specifically, it is classified as an Facultative Anaerobe, meaning it can grow in both aerobic and anaerobic conditions, but prefers aerobic environments. Finally, Bifidobacterium thermophilum RBL67 has been found to have potential applications in the production of lactic acid and other beneficial compounds. Additionally, its ability to ferment complex organic materials makes it a valuable tool in the breakdown and recycling of organic waste. Its remarkable heat tolerance also allows it to be used in the production of fermented foods, such as yogurt and cheese. Overall, Bifidobacterium thermophilum RBL67 is a versatile and heat-loving microbe with significant potential in various industrial and food-related applications." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium thermophilum Positive Anaerobe 1254439 NC_020546.1 Bac0005408 Thioalkalivibrio nitratireducens DSM 14787 str. DSM14787 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio nitratireducens 1255043 NC_019902.2 Bac0005409 Brevibacterium iodinum ATCC 49514 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium iodinum 29 mesophilic 1255616 FXYX00000000.1 Bac0005410 Vagococcus fluvialis bH819 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus fluvialis 1255619 FWFD00000000.1 Bac0005411 Agrococcus casei LMG 22410 "Agrococcus casei LMG 22410 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. This microbe is part of the diverse microbial community found in various environments and is noteworthy for its adaptability to aerobic conditions. ↵↵As a Gram-positive organism, A. casei LMG 22410 possesses a thick peptidoglycan layer in its cell wall, which is characteristic of this group and contributes to its structural integrity. The rod shape of this bacterium may influence its motility and interaction with surrounding microorganisms in its ecological niche. ↵↵Given its optimal growth temperature, A. casei LMG 22410 is likely well-suited to environments that are temperate, which may include soil or plant-associated habitats where it could play a role in nutrient cycling or plant interactions. The aerobic nature of this microbe suggests it may be involved in the degradation of organic matter in oxygen-rich environments, potentially facilitating the breakdown of complex compounds into simpler forms usable by other organisms. This trait may highlight its ecological importance as a contributor to the overall microbial diversity and functionality in its habitat. ↵↵Overall, Agrococcus casei LMG 22410 represents a fascinating example of a Gram-positive bacterium that thrives under aerobic conditions, emphasizing the intricate relationships that exist within microbial ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus casei Gram-positive rod non-motile aerobic 25 mesophilic 1255656 FUHU00000000.1 Bac0005412 Mycetocola reblochoni REB411 "Mycetocola reblochoni REB411 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and a non-spore-forming nature. This organism thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. As a member of the microbial community, its aerobic respiration indicates a reliance on oxygen for energy production, which may influence its habitat preferences in environments with adequate oxygen supply.↵↵The morphological classification of Mycetocola reblochoni REB411 as rod-shaped aligns with several other bacteria within its genus, but its specific growth temperature and oxygen requirements may delineate its ecological niche. The absence of sporulation suggests that this microbe may be less resilient to extreme environmental stresses compared to spore-forming counterparts, which typically have mechanisms to endure harsh conditions. ↵↵The combination of traits exhibited by Mycetocola reblochoni REB411 implies that it could play a role in the decomposition of organic material in oxygen-rich environments, particularly at moderate temperatures. This ecological function could contribute to nutrient cycling and the overall health of the microbial community within its habitat, underscoring the importance of understanding such organisms in environmental microbiology." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola reblochoni Gram-positive rod non-motile aerobic 25 mesophilic non-spore-forming 1255698 FUKR00000000.1 Bac0005413 Providencia alcalifaciens F90-2004 "Providencia alcalifaciens F90-2004 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, utilizing organic compounds for energy. This species is facultatively anaerobic, enabling it to adapt to varying oxygen levels within its habitat, which is primarily the intestinal microflora of animals. The optimal growth temperature for P. alcalifaciens F90-2004 is around 37.0°C, aligning with the physiological conditions found in the intestines of warm-blooded hosts. ↵↵The presence of P. alcalifaciens in the gut microbiome suggests a potential role in nutrient processing and microbial interactions within the intestinal ecosystem. This bacterium’s ability to survive and function efficiently in the complex environment of the animal intestine highlights its adaptability and suggests that it may participate in competitive dynamics with other gut microbes. Further studies could illuminate its specific contributions to gut health and its interactions with the host's immune system, providing insights into the broader implications of gut microbiota composition on host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia alcalifaciens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1256987 JACS00000000.1 Bac0005414 Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639 "Leptospira terpstrae serovar Hualin str. LT 11-33, also designated as ATCC 700639, is a Gram-negative, aerobic bacterium characterized by its curved or spiral shape. This organism belongs to the genus Leptospira, which is known for its distinct morphology and ecological adaptation. As an aerobic microbe, L. terpstrae thrives in environments where oxygen is present, suggesting a potential adaptability to surface water or moist soil ecosystems that facilitate its oxygen requirements.↵↵The curved or spiral morphology of L. terpstrae is indicative of the helical structure typical of many spirochetes, which may play a role in its motility and environmental interactions. The Gram-negative nature of this bacterium is significant as it implies the presence of an outer membrane that can contribute to its resilience in various habitats, potentially influencing its interactions with other microorganisms and its ability to survive in different conditions.↵↵Understanding the specific ecological niches occupied by L. terpstrae could provide insights into the broader ecological roles of Leptospira species, particularly in relation to nutrient cycling and interactions with other microbial communities. Additionally, studying its environmental resilience and physiological traits can enhance our comprehension of how this organism, like others in its genus, may contribute to the dynamics of aquatic ecosystems." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira terpstrae Gram-negative curved/spiral aerobic 1257025 AOGW00000000.2 Bac0005415 Vreelandella nanhaiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella nanhaiensis 1258546 RZHF00000000.1 Bac0005416 Streptococcus gallolyticus subsp. gallolyticus DSM 16831 "Streptococcus gallolyticus subsp. gallolyticus DSM 16831 is a Gram-positive coccus that typically occurs in chains or pairs, demonstrating its characteristic morphology. This subspecies is classified as anaerobic, indicating that it thrives in environments devoid of oxygen. Its habitat is primarily host-associated, suggesting a close relationship with its biological hosts, which may include various mammals.↵↵The chain and pair formation of S. gallolyticus subsp. gallolyticus is a notable trait that can influence its metabolic processes and interactions within host ecosystems. As an anaerobic organism, it likely plays a role in the fermentation processes occurring in the gastrointestinal tracts of its hosts, where it may contribute to the microbial community dynamics.↵↵Understanding the ecological role of S. gallolyticus subsp. gallolyticus within host organisms can provide insights into its potential interactions with other microbial species and its overall impact on host health. Future studies could further elucidate its specific functions and contributions to gut microbiota composition, enhancing our understanding of host-microbe relationships in anaerobic environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gallolyticus Positive Cocci No 1 1 Anaerobic Mesophilic HostAssociated Free living Chains - Pairs 1258574 NZ_CP018822.1 Bac0005417 Corynebacterium ulcerans NCTC 12077 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ulcerans 1258583 AYUJ00000000.1 Bac0005418 Arthrobacter frigidicola Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter frigidicola 1258920 QZVU00000000.1 Bac0005419 Enterococcus faecalis 06-MB-DW-09 "Enterococcus faecalis strain 06-MB-DW-09 is a Gram-positive coccus that functions as a chemoorganotroph and is capable of thriving in various habitats. Optimal growth conditions for this strain occur at an incubation temperature of 37.0°C, which aligns with the physiological temperature of warm-blooded hosts. As a facultative anaerobe, E. faecalis 06-MB-DW-09 can utilize oxygen when available but is also capable of anaerobic respiration, allowing it to adapt to diverse environments where oxygen levels may fluctuate. ↵↵The ability to thrive in multiple habitats indicates a versatile ecological niche, which could encompass both natural environments, such as soil and water, as well as human-associated settings, including the gastrointestinal tract. The strain's capacity for chemoorganotrophy suggests that it can metabolize organic compounds to derive energy, potentially playing a role in the carbon cycling within its environments.↵↵Overall, the traits of E. faecalis 06-MB-DW-09 suggest that it may contribute to ecological processes through organic matter decomposition, while its adaptability to both aerobic and anaerobic conditions underscores its ecological resilience and potential interactions within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1260358 ATIM00000000.1 Bac0005420 Enterococcus faecalis 02-MB-BW-10 "Enterococcus faecalis 02-MB-BW-10 is a Gram-positive coccus that exhibits facultative anaerobic growth and is classified as a chemoorganotroph, utilizing organic compounds as an energy source. This strain thrives optimally at 37.0°C, reflecting its adaptation to warm-blooded hosts, although it has been detected in a variety of habitats, indicating its ecological versatility.↵↵As a member of the Enterococcus genus, E. faecalis is known to inhabit diverse environments, including the gastrointestinal tract of humans and animals, as well as various terrestrial and aquatic ecosystems. This adaptability suggests a significant role in nutrient cycling and microbial community dynamics across different ecological niches. The strain's facultative anaerobic metabolism allows it to survive in both oxygen-rich and oxygen-poor environments, enhancing its survival and proliferation in fluctuating habitats.↵↵Overall, the ecological versatility and metabolic flexibility of Enterococcus faecalis 02-MB-BW-10 underscore its potential contributions to microbial diversity and ecosystem functioning, particularly in environments influenced by organic matter decomposition." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1260363 ATIH00000000.1 Bac0005421 Nostoc sp. 'Peltigera membranacea cyanobiont' N6 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. 'Peltigera membranacea cyanobiont' N6 1261031 NZ_CP026685.1 Bac0005422 Gardnerella vaginalis JCP7275 "Gardnerella vaginalis JCP7275 is a Gram-positive, rod-shaped bacterium that exhibits anaerobic metabolism and is classified as a chemoheterotroph, deriving its energy from organic compounds. This microbe is nonsporulating and thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in its host-associated habitat. ↵↵G. vaginalis is primarily recognized for its association with the human microbiome, particularly within the vaginal environment, where it plays a role in the complex interplay of microbial communities. The presence of this organism can influence the local ecology, affecting the balance of the vaginal microbiota. Although it is often discussed in relation to dysbiosis, further examination of its ecological role may provide insights into its contributions to maintaining or disrupting homeostasis in the vaginal microbiome.↵↵Given its anaerobic nature, G. vaginalis JCP7275 likely interacts with other anaerobic and facultative anaerobic microorganisms in the host, potentially participating in metabolic exchanges that could be crucial for microbial community stability. Understanding the dynamics of G. vaginalis within the host environment could shed light on its broader implications for human health and the maintenance of microbial equilibrium." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261057 ATJS00000000.1 Bac0005423 Gardnerella vaginalis JCP7276 "Gardnerella vaginalis JCP7276 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism. This microbe thrives in anaerobic conditions and is typically associated with host environments, particularly within the human reproductive tract. Optimal growth occurs at 37.0 °C, which aligns with the normal human body temperature, suggesting its adaptation to the host's internal environment. ↵↵As an anaerobic organism, Gardnerella vaginalis JCP7276 relies on the absence of oxygen for its metabolic processes, utilizing organic compounds as energy sources. The presence of this bacterium has been studied in relation to various aspects of female reproductive health, although specific pathogenicity and ecological roles are not defined within the provided traits.↵↵The unique ecological insight of Gardnerella vaginalis JCP7276 lies in its potential interactions within the complex microbial communities of the vagina, where it may play a role in maintaining homeostasis or contributing to dysbiosis under certain conditions. Understanding these interactions is crucial for elucidating the contributions of Gardnerella vaginalis to female health and disease." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261058 ATJR00000000.1 Bac0005424 Gardnerella vaginalis JCP7672 "Gardnerella vaginalis JCP7672 is a Gram-positive, rod-shaped bacterium characterized as a nonsporulating, anaerobic chemoheterotroph. This microbe is predominantly associated with host environments, suggesting a symbiotic or commensal relationship within the human microbiota. Its optimal growth temperature is recorded at 37.0°C, aligning with the physiological conditions of the human body, particularly in the vaginal niche where it is commonly found.↵↵The anaerobic nature of Gardnerella vaginalis indicates that it thrives in low-oxygen environments, which is consistent with the conditions prevalent in the vaginal ecosystem. The metabolic capabilities of this organism allow it to utilize organic compounds for energy, further underscoring its role in the complex microflora of the host. ↵↵While the specific ecological functions of Gardnerella vaginalis JCP7672 within the host-associated habitat remain to be fully elucidated, its presence is often linked to the balance of microbial communities in the vagina. Therefore, understanding the dynamics of this bacterium could provide insights into the maintenance of vaginal health and the potential implications for dysbiosis. As such, Gardnerella vaginalis JCP7672 may serve as a key indicator organism in studies investigating the relationship between microbial communities and reproductive health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261060 ATJP00000000.1 Bac0005425 Gardnerella pickettii JCP7719 "Gardnerella pickettii JCP7719 is a Gram-positive, rod-shaped bacterium that demonstrates nonsporulating characteristics and is classified as a chemoheterotroph. This organism thrives in anaerobic conditions, suggesting a metabolic adaptation to environments devoid of oxygen. Its optimal growth temperature is around 37.0°C, which aligns with the typical physiological temperature of many mammalian hosts.↵↵As a host-associated microbe, Gardnerella pickettii JCP7719 is likely to inhabit specific niches within its host, potentially contributing to the microbial community dynamics in those environments. The anaerobic nature of this bacterium implies it may play a role in the fermentation processes occurring in host-associated ecosystems, which are essential for the breakdown of organic materials and nutrient cycling.↵↵The ecological context of Gardnerella pickettii JCP7719 raises intriguing questions about its interactions with other microbial species and its potential contributions to the overall health of its host. Understanding the specific roles and interactions of this organism within its ecological niche could provide insight into the complexities of host-microbe relationships and the maintenance of microbial homeostasis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella pickettii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261061 ATJO00000000.1 Bac0005426 Gardnerella vaginalis JCP8070 "Gardnerella vaginalis JCP8070 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This microbe is primarily associated with host habitats, suggesting a close relationship with human hosts. Its optimal growth temperature is 37.0°C, which aligns with the average human body temperature, indicating its adaptation to the human microbiome.↵↵As a member of the microbial community, Gardnerella vaginalis plays a role in the complex interactions within the vaginal environment. While this species is often studied in the context of bacterial vaginosis, its specific functions and contributions to host health remain subjects of ongoing research. The anaerobic nature of G. vaginalis implies that it may compete for resources with other microbial species in oxygen-limited niches, potentially influencing the overall microbial balance.↵↵Furthermore, the presence of Gardnerella vaginalis in host-associated habitats underscores its ecological significance in maintaining the stability of the vaginal microbiota. Understanding its biochemical interactions and ecological roles could provide insights into the dynamics of microbial communities and their impacts on host health. This highlights the importance of further investigations into the metabolic pathways and ecological interactions involving Gardnerella vaginalis JCP8070, which may reveal novel aspects of microbial cooperation and competition in human-associated environments." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261065 ATJK00000000.1 Bac0005427 Gardnerella vaginalis JCP8108 "Gardnerella vaginalis JCP8108 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is classified as a chemoheterotroph, indicating that it derives its energy through the consumption of organic compounds, which aligns with its habitat being closely associated with a host. ↵↵G. vaginalis is primarily found in the human urogenital tract, where it plays a significant role in the microbial community. Its presence is often examined in the context of healthy and dysbiotic states of the vaginal microbiome. While it is essential to note that Gardnerella vaginalis has been implicated in various reproductive health issues, the specific strain JCP8108’s role in these processes should be investigated with caution, as its pathogenic potential may vary.↵↵The ecological significance of Gardnerella vaginalis JCP8108 lies in its capacity to adapt to anaerobic conditions within the host environment, potentially influencing the balance of the vaginal microbiota. This adaptability may provide insights into the interactions between different microbial species and their collective impact on host health, particularly concerning the maintenance of a healthy vaginal ecosystem. Understanding these dynamics could inform approaches to manage dysbiosis and promote reproductive health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261066 ATJJ00000000.1 Bac0005428 Mangrovibacterium diazotrophicum str. DSM 27148 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Mangrovibacterium Mangrovibacterium diazotrophicum 1261403 RAPN00000000.1 Bac0005429 Xanthomonas translucens pv. translucens DSM 18974 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas translucens 1261556 NZ_LT604072.1 Bac0005430 Pseudomonas sp. URIL14HWK12:I2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URIL14HWK12:I2 1261632 QKYX00000000.1 Bac0005431 Roseburia sp. 831b Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. 831b 1261635 NZ_CP135163.1 Bac0005432 Anaerostipes sp. 494a Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes sp. 494a 1261636 MJIF00000000.1 Bac0005433 Clostridium pasteurianum DSM 525 = ATCC 6013 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium pasteurianum 1262449 NZ_CP009268.1 Bac0005434 Ralstonia pseudosolanacearum FQY_4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pseudosolanacearum 1262456 NC_021745.1 Bac0005435 Tamaricihabitans halophyticus str. DSM 45765 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Tamaricihabitans Tamaricihabitans halophyticus 1262583 SLXQ00000000.1 Bac0005436 Desulfocurvibacter africanus PCS Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvibacter Desulfocurvibacter africanus 1262666 AOSV00000000.1 Bac0005437 Acidaminococcus sp. CAG:542 str. MGS:542 Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus sp. CAG:542 1262687 CBJX000000000.1 Bac0005438 Alistipes sp. CAG:157 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. CAG:157 1262692 CBAZ000000000.1 Bac0005439 Alistipes sp. CAG:268 "Alistipes sp. CAG:268 is a Gram-negative bacterium belonging to the genus Alistipes, which is primarily recognized for its presence in the human gut microbiome. This microbe plays a significant role in the digestion of complex carbohydrates and contributes to gut health by influencing the host's immune responses and metabolic processes. Alistipes species are anaerobic, thriving in oxygen-free environments, which aligns with their predominant habitat in the intestines of mammals. Research has indicated that Alistipes species, including CAG:268, may be involved in the fermentation of dietary fibers, producing short-chain fatty acids (SCFAs) that are beneficial for gut health. SCFAs are known to serve as energy sources for colonocytes, help maintain gut barrier integrity, and potentially mitigate inflammation.Interestingly, the presence and abundance of Alistipes sp. CAG:268 in the gut microbiota has been correlated with various health conditions, including obesity and inflammatory bowel disease. This suggests that the microbial composition, particularly the presence of specific strains like Alistipes, could influence the host's metabolic profile and susceptibility to disease. In summary, Alistipes sp. CAG:268 exemplifies how specific gut microorganisms can shape human health and disease states, highlighting the intricate connections between our microbiome and well-being. This underscores the potential of targeted probiotic therapies that leverage beneficial gut bacteria to improve health outcomes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. CAG:268 Negative No 1 1262693 CBGE000000000.1 Bac0005440 Alistipes sp. CAG:514 "Alistipes sp. CAG:514 is a nonsporulating microbe that plays a significant role in the animal intestinal microflora, particularly within the gastrointestinal tracts of various mammals. This bacterium is categorized as a chemoheterotroph, meaning it derives its energy from organic compounds, effectively utilizing the diverse substrates present in the gut environment. Notably, Alistipes sp. CAG:514 is involved in thermogenesis, a process that generates heat and can influence the host’s metabolism and energy dynamics. This microbe's presence in the intestinal ecosystem highlights its potential contributions to digestive health and nutrient absorption. By metabolizing complex carbohydrates and proteins, Alistipes sp. CAG:514 may facilitate the breakdown of dietary components, thereby promoting a balanced gut microbiota and enhancing overall gastrointestinal function. Its role as a member of the intestinal flora may also have implications for host immunity and the modulation of inflammatory responses, showcasing the intricate relationships between gut microbes and host health. Interestingly, the efficiency of Alistipes sp. CAG:514 in thermogenesis may provide insights into how gut bacteria can influence energy homeostasis and body temperature regulation in mammals. This capability underscores the adaptive strategies employed by intestinal microbes in their respective environments, illustrating their importance not only as metabolic partners but also as key players in the organism's physiological processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. CAG:514 No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1262696 CAWO000000000.1 Bac0005441 Alistipes sp. CAG:831 "Alistipes sp. CAG:831 is a nonsporulating bacterium primarily found as part of the intestinal microflora in animals. This microbe is notable for its potential role in the digestive processes of its hosts, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are crucial for gut health. Alistipes species, including CAG:831, are typically associated with a healthy gut microbiome and may exhibit symbiotic relationships with their hosts, influencing nutrient absorption and immune responses. Research has indicated that Alistipes sp. CAG:831 may play a role in metabolic processes, possibly interacting with other gut microbes to support a balanced microbiome. The presence of such bacteria is essential for maintaining homeostasis within the gut ecosystem and can affect overall health outcomes. For instance, fluctuations in the populations of Alistipes species have been linked to various conditions, including inflammatory bowel disease and obesity. One particularly intriguing aspect of Alistipes sp. CAG:831 is its potential influence on the gut-brain axis. This relationship suggests that gut microbiota can impact neurological functions and behaviors. Understanding the specific contributions of Alistipes sp. CAG:831 within the gut ecosystem could provide insights into therapeutic strategies for managing gastrointestinal disorders and enhancing overall health through modulation of the gut microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. CAG:831 No 1 Animal Intestinal Microflora Nonsporulating 1262698 CAYB000000000.1 Bac0005442 Anaerostipes sp. CAG:276 str. MGS:276 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes sp. CAG:276 1262699 CBFE000000000.1 Bac0005443 Anaerotruncus sp. CAG:528 str. MGS:528 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus sp. CAG:528 1262700 CBBE000000000.1 Bac0005444 Anaerotruncus sp. CAG:390 str. MGS:390 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus sp. CAG:390 1262703 CBID000000000.1 Bac0005445 Bacteroides sp. CAG:144 str. MGS:144 "Bacteroides sp. CAG:144 str. MGS:144 is a Gram-negative bacterium characterized by its distinct cellular morphology and metabolic capabilities. As a member of the Bacteroides genus, this strain is likely to exhibit anaerobic growth, which is typical for many members of this group, although specific growth conditions have not been detailed. The Gram-negative nature of Bacteroides sp. CAG:144 str. MGS:144 suggests the presence of an outer membrane containing lipopolysaccharides, contributing to its structural integrity and influencing its interaction with the surrounding environment.↵↵Bacteroides species are commonly found in the gastrointestinal tract of humans and other animals, where they play a critical role in the digestion of complex carbohydrates and the maintenance of gut health. While specific metabolic pathways or functions of strain MGS:144 are not provided, its affiliation with the Bacteroides genus implies a potential involvement in polysaccharide degradation and fermentation processes, which are essential for nutrient absorption and microbial community dynamics within the gut microbiome.↵↵The ecological significance of Bacteroides sp. CAG:144 str. MGS:144 may extend beyond its metabolic contributions; it could also serve as a key player in shaping the microbial landscape of its habitat, influencing the overall health and balance of the gut microbiota. Understanding the traits and behaviors of this strain can provide insights into the broader ecological interactions occurring within complex microbial communities." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:144 Negative 1262736 CBBJ000000000.1 Bac0005446 Bacteroides sp. CAG:189 str. MGS:189 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:189 1262737 CAYI000000000.1 Bac0005447 Bacteroides sp. CAG:462 str. MGS:462 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:462 1262740 CBHU000000000.1 Bac0005448 Bacteroides sp. CAG:545 str. MGS:545 "Bacteroides sp. CAG:545 str. MGS:545 is a Gram-negative, anaerobic bacterium that is part of the animal intestinal microflora. This strain is characterized by its ability to thrive in oxygen-deprived environments, which is typical for many members of the Bacteroides genus. As a component of the gut microbiota, Bacteroides sp. CAG:545 plays a significant role in the digestion of complex carbohydrates, contributing to the breakdown of dietary fibers that are otherwise indigestible by the host. ↵↵The presence of Bacteroides species in the intestinal ecosystem is generally associated with the maintenance of gut health, as they can influence the composition of the microbiome and modulate immune responses. Their anaerobic nature suggests that they are well-adapted to the low-oxygen conditions typically found in the intestines, which allows them to outcompete aerobic bacteria in this niche. ↵↵Further research into Bacteroides sp. CAG:545 may shed light on its specific metabolic pathways and interactions with other gut microbes, which could enhance our understanding of gut health and the overall balance of the intestinal microbiome. Given the essential roles of anaerobic bacteria in fermentation processes and nutrient absorption, Bacteroides sp. CAG:545 may contribute to the broader ecological dynamics of the gut environment, influencing host metabolism and health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:545 Negative No 1 Anaerobic Animal Intestinal Microflora 1262742 CBAA000000000.1 Bac0005449 Bacteroides sp. CAG:598 str. MGS:598 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:598 1262743 CAWS000000000.1 Bac0005450 Bacteroides sp. CAG:770 str. MGS:770 "Bacteroides sp. CAG:770 str. MGS:770 is a Gram-negative, nonsporulating bacterium that exhibits chemoheterotrophic metabolism and is strictly anaerobic. Belonging to the Bacteroides genus, this microbe plays a crucial role in the degradation of complex polysaccharides within anaerobic environments, such as the human gastrointestinal tract. Its ability to thrive without oxygen underscores its adaptation to specific ecological niches where it contributes to the breakdown of dietary fibers and other organic materials.↵↵As a nonsporulating organism, Bacteroides sp. CAG:770 str. MGS:770 relies on its metabolic versatility to obtain energy from various organic compounds, which is essential for its survival in anaerobic conditions. This characteristic allows the bacterium to occupy a stable ecological role in diverse microbial communities, particularly in the gut microbiome, where it may participate in symbiotic relationships with host organisms and other microbes.↵↵The metabolic processes of Bacteroides sp. CAG:770 str. MGS:770 highlight its potential significance in maintaining gut health and influencing nutrient absorption. Furthermore, its role in the fermentation of carbohydrates can contribute to the production of short-chain fatty acids, which are beneficial for the host's energy metabolism and immune function. Overall, the traits of Bacteroides sp. CAG:770 str. MGS:770 illustrate its importance in anaerobic ecosystems and its potential contributions to host-microbe interactions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:770 Negative No 1 Anaerobic Chemoheterotroph Nonsporulating 1262751 CBFR000000000.1 Bac0005451 Bacteroides sp. CAG:927 str. MGS:927 "Bacteroides sp. CAG:927 str. MGS:927 is a Gram-negative, nonsporulating bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This organism is part of a diverse group of bacteria known for their ability to degrade complex carbohydrates and contribute to the microbial community within various habitats, including the human gut and other anaerobic ecosystems.↵↵As a nonsporulating species, Bacteroides sp. CAG:927 str. MGS:927 relies on a consistent nutrient supply for its growth and metabolism, making it well adapted to environments where organic matter is readily available. Its chemoheterotrophic nature indicates that it utilizes organic compounds for both energy and carbon, which is significant for its role in nutrient cycling within its ecological niche.↵↵This strain's ability to thrive in multiple habitats suggests a versatile adaptability to varying anaerobic conditions, which may involve interactions with other microbial taxa. Understanding the metabolic capabilities and ecological roles of Bacteroides sp. CAG:927 str. MGS:927 may provide insights into the functioning of anaerobic microbial communities and their contributions to nutrient degradation and energy flow in complex ecosystems. This adaptability underscores the importance of Bacteroides species in maintaining microbial diversity and ecosystem health, particularly in environments where anaerobic conditions prevail." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:927 Negative No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 1262753 CAWM000000000.1 Bac0005452 Blautia sp. CAG:37 str. MGS:37 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. CAG:37 1262757 CBJJ000000000.1 Bac0005453 Brachyspira sp. CAG:700 str. MGS:700 Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira sp. CAG:700 1262760 CAYT000000000.1 Bac0005454 Butyrivibrio sp. CAG:318 str. MGS:318 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. CAG:318 1262761 CBFF000000000.1 Bac0005455 Clostridium sp. CAG:1013 str. MGS:1013 "Clostridium sp. CAG:1013 str. MGS:1013 is a Gram-positive bacterium belonging to the genus Clostridium, which is characterized by its anaerobic metabolism and ability to form spores. This strain exhibits typical features of Clostridia, including the capacity for fermentative growth in environments devoid of oxygen. The Gram-positive nature of CAG:1013 implies a thick peptidoglycan layer in its cell wall, which is a hallmark of this bacterial group, potentially contributing to its resilience in various environments.↵↵While specific metabolic pathways and ecological niches for Clostridium sp. CAG:1013 str. MGS:1013 are not detailed, members of the Clostridium genus are known for their diverse metabolic capabilities, including the fermentation of carbohydrates and other organic compounds. This versatility may allow CAG:1013 to thrive in anaerobic conditions, such as those found in the gastrointestinal tracts of animals or in decaying organic matter.↵↵In summary, Clostridium sp. CAG:1013 str. MGS:1013 represents a Gram-positive, anaerobic spore-forming bacterium with potential implications for studying microbial fermentation processes. Its ecological role may be significant in nutrient cycling within anaerobic environments, highlighting the importance of such microbes in maintaining ecosystem health and function." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:1013 Positive 1262769 CAWF000000000.1 Bac0005456 Clostridium sp. CAG:1024 str. MGS:1024 "Clostridium sp. CAG:1024 str. MGS:1024 is a Gram-positive, rod-shaped bacterium classified within the genus Clostridium, exhibiting chemoheterotrophic metabolism and an anaerobic lifestyle. This organism is primarily found in the intestinal microflora of animals, indicating its role in the complex microbial ecosystems present within the gastrointestinal tract. ↵↵As a member of the Clostridia class, C. sp. CAG:1024 str. MGS:1024 likely contributes to various biochemical processes, including the fermentation of dietary fibers and production of short-chain fatty acids, which are essential for host health and nutrient absorption. The anaerobic nature of this strain suggests it thrives in low-oxygen environments, where it can effectively utilize organic compounds as energy sources.↵↵Given its habitat in animal intestines, this strain may play a pivotal role in maintaining gut homeostasis and influencing the overall microbial diversity. The interactions between C. sp. CAG:1024 str. MGS:1024 and other gut microbiota could provide insights into its potential functions in digestion and metabolic processes, emphasizing the intricate relationships that characterize the gut microbiome. Further investigation into this organism may reveal additional functional traits that contribute to the health and well-being of its host." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:1024 Positive Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora 1262770 CAWJ000000000.1 Bac0005457 Clostridium sp. CAG:127 str. MGS:127 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:127 1262774 CAZJ000000000.1 Bac0005458 Clostridium sp. CAG:149 str. MGS:149 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:149 1262776 CAYX000000000.1 Bac0005459 Clostridium sp. CAG:167 str. MGS:167 "Clostridium sp. CAG:167 str. MGS:167 is a Gram-positive bacterium, belonging to the genus Clostridium, which encompasses a diverse group of anaerobic, spore-forming microorganisms. This strain is characterized by its ability to thrive in environments devoid of oxygen, a trait common among members of its genus. Clostridia are known for their metabolic versatility, often utilizing fermentation pathways to generate energy, which may influence their ecological roles in various anaerobic habitats.↵↵The Gram-positive nature of Clostridium sp. CAG:167 str. MGS:167 suggests a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and resilience in challenging environments. This characteristic is critical for its survival in fluctuating conditions, which may include exposure to competing microbial populations.↵↵While specific physiological traits such as metabolic capabilities, spore formation, and substrate utilization have not been detailed, the known characteristics of the Clostridium genus imply that this strain may play a significant role in nutrient cycling, particularly in anaerobic environments such as soil, sediments, or the gastrointestinal tracts of animals. ↵↵Overall, Clostridium sp. CAG:167 str. MGS:167 exemplifies the adaptive nature of anaerobic bacteria and highlights the importance of Gram-positive microbes in maintaining ecological balance within their respective environments. Further investigation into its metabolic pathways and interactions with other microorganisms could provide valuable insights into its ecological niche and potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:167 Positive 1262777 CBAV000000000.1 Bac0005460 Clostridium sp. CAG:226 str. MGS:226 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:226 1262781 CAWN000000000.1 Bac0005461 Clostridium sp. CAG:230 str. MGS:230 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:230 1262782 CBCQ000000000.1 Bac0005462 Clostridium sp. CAG:242 str. MGS:242 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:242 1262783 CBCM000000000.1 Bac0005463 Clostridium sp. CAG:265 str. MGS:265 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:265 1262787 CBEC000000000.1 Bac0005464 Clostridium sp. CAG:273 str. MGS:273 "Clostridium sp. CAG:273 str. MGS:273 is a Gram-positive bacterium, which indicates its thick peptidoglycan layer in the cell wall structure. This characteristic is typical of the Clostridia class, which is known for its anaerobic metabolism and ability to form endospores, although specific details regarding its metabolic pathways and spore formation were not provided. ↵↵As a member of the Clostridium genus, this strain may exhibit traits common to other species within this group, such as the production of various enzymes and metabolites, which can play significant roles in fermentation processes. Clostridia are often found in anaerobic environments, such as soils, sediments, and the intestines of animals, where they contribute to the degradation of organic matter.↵↵While the specific ecological role of Clostridium sp. CAG:273 str. MGS:273 is not detailed in the available data, the presence of Gram-positive bacteria in anaerobic environments is crucial for nutrient cycling, particularly in the decomposition of complex organic compounds. These microbes are vital for maintaining soil health and fertility, as they can influence the availability of nutrients through their metabolic activities. Therefore, understanding the traits of Clostridium sp. CAG:273 str. MGS:273 may provide insights into its potential contributions to anaerobic ecosystems and its role in biogeochemical cycles." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:273 Positive 1262789 CBJR000000000.1 Bac0005465 Clostridium sp. CAG:299 str. MGS:299 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:299 1262792 CBGZ000000000.1 Bac0005466 Clostridium sp. CAG:307 str. MGS:307 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:307 1262795 CBIO000000000.1 Bac0005467 Clostridium sp. CAG:354 str. MGS:354 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:354 1262799 CBIG000000000.1 Bac0005468 Clostridium sp. CAG:411 str. MGS:411 "Clostridium sp. CAG:411 str. MGS:411 is a Gram-positive bacterium belonging to the genus Clostridium, which is known for its ability to thrive in anaerobic environments. This strain exhibits typical characteristics of the Clostridia, including the potential for spore formation, although detailed information regarding its sporulation capabilities has not been provided. The Gram-positive nature of Clostridium sp. CAG:411 str. MGS:411 suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in challenging environmental conditions.↵↵While specific metabolic pathways and ecological roles of this strain are not detailed in the available data, Clostridium species are generally recognized for their diverse metabolic strategies, including fermentation of various substrates. These metabolic capabilities often play a significant role in nutrient cycling, particularly in anaerobic environments, such as in soil and the gastrointestinal tracts of animals. ↵↵Given these traits, Clostridium sp. CAG:411 str. MGS:411 may participate in critical ecological processes, such as organic matter decomposition, which contributes to soil health and nutrient availability. Further research could elucidate its specific metabolic pathways and interactions within its ecosystem, potentially providing insights into its role in anaerobic microbial communities and its contributions to biogeochemical cycles." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:411 Positive 1262802 CBIY000000000.1 Bac0005469 Clostridium sp. CAG:413 str. MGS:413 "Clostridium sp. CAG:413 str. MGS:413 is a Gram-positive, rod-shaped bacterium classified within the Clostridium genus, known for its anaerobic lifestyle and chemoheterotrophic metabolism. This microbe thrives in the animal intestinal microflora, where it plays a role in the complex microbial ecosystem of the gut. As a chemoheterotroph, Clostridium sp. CAG:413 str. MGS:413 relies on organic compounds as its energy source, contributing to the breakdown of substrates in the gastrointestinal tract.↵↵The anaerobic requirement of this strain indicates its adaptation to environments devoid of oxygen, which is characteristic of many Clostridia that inhabit the intestines of various animals. This adaptation allows it to coexist with other anaerobic microorganisms, facilitating diverse metabolic interactions and potentially influencing the overall health of the host.↵↵Additionally, the presence of Clostridium sp. CAG:413 str. MGS:413 in the intestinal microflora may have implications for nutrient processing and absorption, as well as interactions with the immune system. As such, this strain could be an important participant in the maintenance of gut homeostasis, although further research would be necessary to fully elucidate its specific contributions and interactions within the intestinal ecosystem." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:413 Positive Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora 1262803 CBES000000000.1 Bac0005470 Clostridium sp. CAG:43 str. MGS:43 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:43 1262805 CBHG000000000.1 Bac0005471 Clostridium sp. CAG:440 str. MGS:440 "Clostridium sp. CAG:440 str. MGS:440 is a Gram-positive bacterium, characterized by its robust cell wall structure typical of the Clostridia group. This strain likely exhibits the anaerobic metabolism commonly associated with other members of the Clostridium genus, suggesting it thrives in environments devoid of oxygen. ↵↵While specific metabolic capabilities and phenotypic traits for CAG:440 str. MGS:440 are not detailed in the provided data, Clostridium species are generally known for their diverse metabolic pathways, which can include fermentation processes that contribute to their ecological roles in various environments, particularly in soil and the gastrointestinal tracts of animals. The Gram-positive nature of this strain indicates the presence of a thick peptidoglycan layer in its cell wall, which may confer certain advantages in terms of survival in hostile conditions.↵↵Understanding the traits of Clostridium sp. CAG:440 str. MGS:440 can provide insights into its potential ecological roles, particularly in nutrient cycling and organic matter decomposition. Given the general ecological role of Clostridium species in anaerobic environments, this strain may play a significant part in the breakdown of complex organic materials, contributing to soil health and fertility. Further investigation into its specific metabolic functions could reveal its contributions to microbial communities and ecosystem dynamics." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:440 Positive 1262807 CBIP000000000.1 Bac0005472 Clostridium sp. CAG:448 str. MGS:448 "Clostridium sp. CAG:448 str. MGS:448 is a Gram-positive bacterium belonging to the genus Clostridium, which is characterized by its ability to form spores and thrive in anaerobic environments. As a member of this genus, C. sp. CAG:448 may exhibit metabolic capabilities typical of Clostridia, including the fermentation of various substrates, although specific metabolic pathways and substrate preferences have not been detailed. ↵↵The Gram-positive nature of this strain suggests a thick peptidoglycan layer in its cell wall, which is a common feature among members of the Clostridia class. This structural attribute can provide resistance to certain environmental stresses, including desiccation. The anaerobic lifestyle of Clostridium species often associates them with specific niches, such as the gastrointestinal tracts of animals or decaying organic matter, where they play crucial roles in biogeochemical cycles, particularly in the decomposition of complex organic materials.↵↵While the specific ecological role of C. sp. CAG:448 has not been elucidated, its classification within the Clostridium group implies potential involvement in fermentation processes that contribute to nutrient cycling in anaerobic environments. Further investigation into this strain may reveal its specific metabolic functions and ecological interactions, which could enhance our understanding of its role in microbial communities and its potential applications in biotechnology or environmental management." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:448 Positive 1262808 CBFP000000000.1 Bac0005473 Clostridium sp. CAG:505 str. MGS:505 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:505 1262814 CBHJ000000000.1 Bac0005474 Clostridium sp. CAG:567 str. MGS:567 "Clostridium sp. CAG:567 str. MGS:567 is a Gram-positive bacterium belonging to the genus Clostridium, characterized by its distinctive morphological and physiological traits. Members of this genus are commonly known for their anaerobic metabolism, which allows them to thrive in environments devoid of oxygen. Although specific metabolic pathways or fermentation products for CAG:567 str. MGS:567 are not detailed here, Clostridia generally play a significant role in various biochemical processes, including the degradation of complex organic matter.↵↵The Gram-positive nature of Clostridium sp. CAG:567 str. MGS:567 suggests a thick peptidoglycan layer in its cell wall, a feature that is typical of this group and essential for the bacterium's structural integrity and resistance to certain environmental stresses. The presence of such a robust cell wall could also influence its interactions with other microbial species in the same habitat.↵↵In addition to its structural characteristics, the ecological roles of Clostridium species often include contributions to nutrient cycling, particularly in anaerobic environments such as soil, sediments, and the gastrointestinal tracts of various organisms. The ability of Clostridium sp. CAG:567 str. MGS:567 to inhabit these environments may highlight its potential involvement in organic matter decomposition and the recycling of nutrients, thereby supporting the health of its ecosystem. Further research could elucidate its specific contributions to microbial communities and biogeochemical cycles." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:567 Positive 1262820 CBJZ000000000.1 Bac0005475 Clostridium sp. CAG:571 str. MGS:571 "Clostridium sp. CAG:571 str. MGS:571 is a Gram-positive bacterium belonging to the genus Clostridium, which is characterized by its ability to form endospores. While specific metabolic capabilities and ecological roles for this strain have not been provided, members of the Clostridium genus are typically anaerobic and are often found in diverse environments, including soil, sediments, and the intestinal tract of animals. ↵↵The Gram-positive nature of C. sp. CAG:571 suggests that it possesses a thick peptidoglycan layer in its cell wall, which is a defining feature of this group of bacteria. This structure not only contributes to the bacterium's structural integrity but also plays a role in its interactions with the environment, including resistance to certain environmental stressors. ↵↵Given the ecological diversity of the Clostridium genus, it is plausible that C. sp. CAG:571 could participate in various biogeochemical cycles, particularly those involving fermentation processes. Such involvement may be significant in nutrient cycling, particularly in anaerobic environments where organic matter decomposition occurs. The potential for this strain to contribute to fermentation processes could indicate a role in the breakdown of complex organic substrates, which is a critical function in maintaining ecosystem health and dynamics. Further research would be necessary to elucidate the specific metabolic pathways and ecological contributions of C. sp. CAG:571." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:571 Positive 1262822 CBBG000000000.1 Bac0005476 Clostridium sp. CAG:58 str. MGS:58 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:58 1262824 CBFK000000000.1 Bac0005477 Clostridium sp. CAG:590 str. MGS:590 "Clostridium sp. CAG:590 str. MGS:590 is a Gram-positive bacterium characterized by its presence within the intestinal microflora of animals. This species is part of the diverse group of Clostridia, which are known for their anaerobic metabolism and ability to produce spores under adverse conditions. While specific metabolic pathways and enzymatic capabilities of Clostridium sp. CAG:590 remain to be fully elucidated, its classification within the Clostridia suggests potential roles in fermentative processes and nutrient cycling within the gut ecosystem.↵↵The habitat of Clostridium sp. CAG:590 as part of animal intestinal microflora indicates its involvement in the complex interactions that occur within the gastrointestinal tract. In this environment, it may contribute to the breakdown of complex carbohydrates, thereby aiding in digestion and promoting gut health. The presence of such microorganisms is critical for maintaining a balanced microbiome, as they participate in the degradation of indigestible substrates and the synthesis of essential metabolites, including short-chain fatty acids.↵↵Understanding the specific functions and interactions of Clostridium sp. CAG:590 in the intestinal ecosystem is crucial, as it highlights the intricate relationships that exist among gut microbes and their impact on host physiology. Further research into this strain may reveal insights into its functional contributions to gut homeostasis and its potential implications for animal health and nutrition." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:590 Positive No 1 Animal Intestinal Microflora 1262825 CAXF000000000.1 Bac0005478 Clostridium sp. CAG:632 str. MGS:632 "Clostridium sp. CAG:632 str. MGS:632 is a Gram-positive, rod-shaped bacterium that exists primarily as single cells. This organism is classified as a chemoheterotroph, deriving its energy from organic compounds, and it is strictly anaerobic, thriving in environments devoid of oxygen. Notably, C. sp. CAG:632 is part of the animal intestinal microflora, suggesting its role in the complex microbial communities found within the gastrointestinal tracts of various hosts.↵↵The presence of this strain in the intestinal ecosystem may contribute to essential processes such as fermentation of dietary fibers and the production of short-chain fatty acids, which can have significant implications for host health. The anaerobic nature of this species indicates its adaptation to the unique conditions of the gut, where oxygen levels are minimal, and competition for resources is fierce. ↵↵Understanding the specific metabolic capabilities and interactions of C. sp. CAG:632 within the intestinal microbiome can provide insights into its potential contributions to gut health and its roles in nutrient metabolism. This strain exemplifies the complexity of microbial life within the gut environment, highlighting how anaerobic bacteria like Clostridium can participate in vital ecological functions despite their strict oxygen requirements." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:632 Positive Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Singles 1262830 CAYL000000000.1 Bac0005479 Clostridium sp. CAG:678 str. MGS:678 "Clostridium sp. CAG:678 str. MGS:678 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as a chemoheterotroph. This strain thrives in anaerobic environments, making it well-adapted to its natural habitat within the intestinal microflora of animals. As a sporulating organism, it has the ability to form spores, which may enhance its survival in harsh conditions and contribute to its persistence in the gastrointestinal tract.↵↵The anaerobic lifestyle of Clostridium sp. CAG:678 str. MGS:678 suggests a specialized role in the fermentation of complex organic materials, utilizing various substrates derived from host digestion and dietary components. Its presence in the animal intestinal microflora indicates a potential contribution to the gut ecosystem, possibly aiding in digestion or contributing to the overall microbial balance. ↵↵Further exploration of this strain could provide insights into its specific metabolic pathways and interactions with other gut microbiota, highlighting its potential role in maintaining intestinal health. Understanding such dynamics could also shed light on the potential impacts of diet and environment on the composition of intestinal microbiomes." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:678 Positive Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Sporulating 1262831 CAYP000000000.1 Bac0005480 Clostridium sp. CAG:7 str. MGS:7 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:7 1262832 CAYE000000000.1 Bac0005481 Clostridium sp. CAG:75 str. MGS:75 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:75 1262836 CBAE000000000.1 Bac0005482 Clostridium sp. CAG:81 str. MGS:81 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:81 1262842 CAXP000000000.1 Bac0005483 Clostridium sp. CAG:964 str. MGS:964 "Clostridium sp. CAG:964 str. MGS:964 is a Gram-positive bacterium belonging to the genus Clostridium. Members of this genus are typically characterized by their anaerobic metabolism, spore-forming capabilities, and ability to produce various metabolites, although specific details regarding the metabolic pathways or by-products of this particular strain remain unspecified. Clostridia are commonly found in diverse environments, including soil and the gastrointestinal tracts of animals, suggesting a broad ecological adaptability.↵↵As a Gram-positive organism, Clostridium sp. CAG:964 str. MGS:964 possesses a thick peptidoglycan layer in its cell wall, which is a hallmark of Gram-positive bacteria. This structural feature may confer certain advantages, such as enhanced resistance to desiccation and the ability to survive in harsh environmental conditions, although specific resilience traits for this strain are not provided.↵↵Understanding the traits of Clostridium sp. CAG:964 str. MGS:964 is essential for further research, particularly in assessing its potential roles in biogeochemical cycles or its interactions within microbial communities. The ability of Clostridium species to engage in fermentation processes suggests that this strain may contribute to nutrient cycling in anaerobic environments, influencing the dynamics of the microbial ecosystem it inhabits." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:964 Positive 1262848 CBFZ000000000.1 Bac0005484 Coprobacillus sp. CAG:235 str. MGS:235 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. CAG:235 1262854 CAZR000000000.1 Bac0005485 Coprococcus sp. CAG:782 str. MGS:782 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. CAG:782 1262863 CAYJ000000000.1 Bac0005486 Dialister sp. CAG:357 str. MGS:357 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister sp. CAG:357 1262869 CBHT000000000.1 Bac0005487 Dorea sp. CAG:105 str. MGS:105 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea sp. CAG:105 1262872 CAWY000000000.1 Bac0005488 Dorea sp. CAG:317 str. MGS:317 "Dorea sp. CAG:317 str. MGS:317 is a Gram-positive, chemoheterotrophic bacterium that resides within the intestinal microflora of animals. This organism relies on organic compounds as both carbon and energy sources, reflecting its adaptation to the nutrient-rich environment of the gut. The presence of Dorea sp. in the intestinal microbiome suggests its potential role in the complex interactions that characterize gut ecosystems, where it may participate in the fermentation of dietary fibers and contribute to the overall metabolic processes of the host.↵↵While the specific functions of Dorea sp. CAG:317 in the microbiome remain to be fully elucidated, its classification as a member of the intestinal microflora indicates that it may play a role in maintaining gut health or influencing the metabolic pathways of the host. The ability of this species to thrive in the anaerobic conditions typically found in the intestines further underscores its ecological niche and suggests a possible involvement in the degradation of polysaccharides or other complex carbohydrates that are otherwise indigestible to the host. ↵↵Understanding the dynamics of Dorea sp. CAG:317 in the gut microbiota may provide insights into its contributions to host metabolism and health, as well as its interactions with other microbial inhabitants of the intestinal ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea sp. CAG:317 Positive No 1 Chemoheterotroph Animal Intestinal Microflora 1262873 CBGJ000000000.1 Bac0005489 Eubacterium sp. CAG:115 str. MGS:115 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:115 1262878 CAYS000000000.1 Bac0005490 Eubacterium sp. CAG:156 str. MGS:156 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:156 1262880 CBBN000000000.1 Bac0005491 Eubacterium sp. CAG:192 str. MGS:192 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:192 1262883 CBDB000000000.1 Bac0005492 Eubacterium sp. CAG:251 str. MGS:251 "Eubacterium sp. CAG:251 str. MGS:251 is a Gram-positive bacterium characterized as a chemoheterotroph, utilizing organic compounds as its primary energy source. This strain is part of the diverse Eubacterium genus, which is known for its role in various metabolic processes within different ecosystems, particularly in the human gut microbiota. The chemoheterotrophic metabolism indicates that Eubacterium sp. CAG:251 relies on organic substrates not only for energy but also for carbon, highlighting its potential involvement in nutrient cycling and organic matter decomposition in its habitat.↵↵Gram-positive bacteria, such as Eubacterium sp. CAG:251, are characterized by a thick peptidoglycan layer in their cell walls, which can influence their interactions with the environment and other microbial communities. This structural feature may confer advantages in specific niches, allowing the organism to maintain stability and resilience in varying conditions.↵↵The ecological significance of Eubacterium sp. CAG:251 may extend to its contributions to gut health and microbial balance. Given its metabolic capabilities, it could play a role in breaking down complex carbohydrates or other organic materials, thus influencing the availability of nutrients for other microorganisms and the host. Future studies may reveal more about its interactions within microbial consortia and its overall impact on ecological dynamics in its native habitat." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:251 Positive No 1 Chemoheterotroph 1262886 CBFD000000000.1 Bac0005493 Eubacterium sp. CAG:274 str. MGS:274 "Eubacterium sp. CAG:274 str. MGS:274 is a Gram-positive, chemoheterotrophic bacterium primarily found within the intestinal microflora of animals. This organism plays a significant role in the gut ecosystem, contributing to the degradation of complex organic materials and facilitating nutrient absorption for the host. As a member of the Eubacterium genus, it is presumed to engage in various metabolic processes that support the overall health and function of the intestinal microbiome.↵↵The chemoheterotrophic nature of Eubacterium sp. CAG:274 suggests that it utilizes organic compounds, derived from dietary sources or other microbial activity, as its energy source. This lifestyle positions it as a key player in the symbiotic relationships that exist within the gut, where it may interact with other microbial species, contributing to a balanced microbial community. ↵↵The presence of Eubacterium sp. CAG:274 in the intestinal environment underscores the importance of microbial diversity for maintaining gastrointestinal homeostasis. Its metabolic activities may influence not only nutrient cycling but also the immune responses of the host, highlighting the intricate connections between gut microbes and host health. Understanding the specific roles and interactions of such microbes can provide insights into their contributions to digestive processes and overall well-being in animal hosts." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:274 Positive No 1 Chemoheterotroph Animal Intestinal Microflora 1262888 CBEX000000000.1 Bac0005494 Eubacterium sp. CAG:581 str. MGS:581 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:581 1262890 CBKI000000000.1 Bac0005495 Fusobacterium sp. CAG:439 str. MGS:439 "Fusobacterium sp. CAG:439 str. MGS:439 is a Gram-negative bacterium belonging to the genus Fusobacterium, which is characterized by its rod-shaped morphology and anaerobic metabolism. This microbe is part of a group of bacteria that are often found in various environments, including the human oral cavity and gastrointestinal tract, suggesting a potential role in microbial communities associated with these habitats.↵↵As a member of the Fusobacterium genus, this strain may be involved in complex interactions within the microbiome, where it could contribute to the breakdown of organic materials and influence the overall health of the host. The Gram-negative nature of Fusobacterium sp. CAG:439 str. MGS:439 is indicative of its structural characteristics, including the presence of a thin peptidoglycan layer and an outer membrane, which may confer resistance to certain antimicrobial agents and affect its interactions with host immune responses.↵↵While specific metabolic pathways and ecological roles of Fusobacterium sp. CAG:439 str. MGS:439 are not detailed in the available data, its classification within the Fusobacterium genus implies potential involvement in anaerobic fermentation processes. Further research into this strain's specific interactions within microbial communities could provide insights into its ecological significance, particularly in the context of human health and disease. Understanding the dynamics of such bacteria may enhance our comprehension of microbiome stability and the implications of microbial imbalance." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CAG:439 Negative 1262899 CBJH000000000.1 Bac0005496 Odoribacter sp. CAG:788 str. MGS:788 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter sp. CAG:788 1262909 CAZK000000000.1 Bac0005497 Phascolarctobacterium faecium Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium faecium anaerobic 1262914 CBDS000000000.1 Bac0005498 Prevotella sp. CAG:1031 str. MGS:1031 "Prevotella sp. CAG:1031 str. MGS:1031 is a Gram-negative bacterium belonging to the genus Prevotella, which is characterized by its anaerobic metabolic capabilities. Members of this genus are typically found in various human and animal microbiomes, where they play significant roles in the breakdown of complex carbohydrates and protein fermentation. ↵↵As a Gram-negative organism, Prevotella sp. CAG:1031 str. MGS:1031 possesses a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in its natural environments, such as resistance to some antibiotics and the ability to evade immune responses. The specific metabolic pathways utilized by this strain, while not detailed here, likely contribute to its ecological niche, particularly in environments rich in dietary fibers and proteins.↵↵The presence of Prevotella species in the human gut has been linked to various aspects of health and disease, suggesting that this strain may also participate in complex interactions within the gut microbiome. Its role in the fermentation of dietary components may influence the production of short-chain fatty acids, which are beneficial for gut health and may modulate immune responses. Overall, Prevotella sp. CAG:1031 str. MGS:1031 exemplifies the diverse metabolic capabilities of the Prevotella genus, highlighting its potential importance in maintaining microbial balance within its ecological niche." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:1031 Negative No 1 1262917 CAWK000000000.1 Bac0005499 Prevotella sp. CAG:1058 str. MGS:1058 "Prevotella sp. CAG:1058 str. MGS:1058 is a Gram-negative bacterium belonging to the genus Prevotella, which is noted for its role in the human microbiome. This microbe is characterized by its distinct cell wall structure, which is typical of Gram-negative organisms, featuring a thin peptidoglycan layer and an outer membrane that contains lipopolysaccharides. These structural components are significant for the bacterium's interactions within its environment, including its potential roles in fermentation and metabolic processes.↵↵Prevotella species are often associated with various ecosystems, particularly in the human oral cavity and gastrointestinal tract, where they contribute to the complex microbial community. While specific traits related to metabolic capabilities or ecological niches of Prevotella sp. CAG:1058 str. MGS:1058 are not provided, members of this genus are generally known for their ability to degrade polysaccharides and produce short-chain fatty acids, which can influence host metabolism and immune responses.↵↵The presence of Prevotella sp. CAG:1058 str. MGS:1058 within microbial communities may reflect its adaptive strategies to the nutrient-rich environments of the human body, highlighting the importance of Gram-negative bacteria in maintaining microbial diversity and health. Understanding the specific roles and interactions of this strain could provide insights into the broader functions of the human microbiome in health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:1058 Negative 1262918 CAWU000000000.1 Bac0005500 Prevotella sp. CAG:1320 str. MGS:1320 "Prevotella sp. CAG:1320 str. MGS:1320 is a Gram-negative bacterium that is part of the intestinal microflora of animals. This microbe is characterized by its role in the gastrointestinal ecosystem, where it contributes to the complex interplay of microbial communities that aid in digestion and nutrient absorption. The Gram-negative nature of Prevotella sp. CAG:1320 suggests a specific membrane structure that may influence its interactions with the host environment and other microbial species.↵↵Prevotella spp. are typically associated with the fermentation of carbohydrates, producing short-chain fatty acids that can serve as energy sources for both the host and other microbes within the gut. The presence of Prevotella sp. CAG:1320 in the intestinal microflora underscores its potential involvement in maintaining microbial balance and supporting gut health through these metabolic activities.↵↵Moreover, the habitat of this strain in animal intestines highlights its possible adaptations to the anaerobic conditions present in these environments. The interactions between Prevotella sp. CAG:1320 and other gut inhabitants may play a significant role in shaping the overall composition and functionality of the intestinal microbiome. Understanding the specific contributions of this strain could provide insights into the broader implications of gut health and the maintenance of microbial diversity in animal hosts, emphasizing the importance of microbial communities in digestive processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:1320 Negative No 1 Animal Intestinal Microflora 1262922 CBCU000000000.1 Bac0005501 Prevotella sp. CAG:255 str. MGS:255 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:255 1262923 CAWV000000000.1 Bac0005502 Prevotella sp. CAG:386 str. MGS:386 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:386 1262925 CBEZ000000000.1 Bac0005503 Prevotella sp. CAG:474 str. MGS:474 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:474 1262926 CBGF000000000.1 Bac0005504 Prevotella sp. CAG:487 str. MGS:487 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:487 1262928 CAZM000000000.1 Bac0005505 Prevotella sp. CAG:520 str. MGS:520 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:520 1262929 CBCY000000000.1 Bac0005506 Prevotella sp. CAG:5226 str. MGS:5226 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:5226 1262930 CBBW000000000.1 Bac0005507 Prevotella sp. CAG:604 str. MGS:604 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:604 1262932 CBCB000000000.1 Bac0005508 Prevotella sp. CAG:755 str. MGS:755 "Prevotella sp. CAG:755 str. MGS:755 is a Gram-negative, nonsporulating bacterium that functions as a chemoheterotroph, primarily inhabiting the gut of its host. This microbe plays a significant role in the complex microbial community of the gastrointestinal tract, where it contributes to the breakdown of various organic compounds for energy. ↵↵As a member of the Prevotella genus, this strain is likely involved in the fermentation of dietary fibers and proteins, aiding in nutrient absorption and gut health. The presence of Prevotella species in the gut has been associated with diverse dietary habits, particularly in individuals consuming high-fiber diets, which may influence overall metabolic processes and host health.↵↵The ecological niche occupied by Prevotella sp. CAG:755 str. MGS:755 suggests its importance in maintaining a balanced gut microbiome. Its ability to thrive in the anaerobic conditions of the gut environment underscores its potential role in the fermentation processes that are crucial for nutrient recycling and energy extraction in the host. Understanding the specific metabolic pathways and interactions of this strain within the gut ecosystem could provide insights into its contributions to host-microbe symbiosis and overall gut health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:755 Negative No 1 Chemoheterotroph Host Gut Nonsporulating 1262935 CAXR000000000.1 Bac0005509 Prevotella sp. CAG:924 str. MGS:924 "Prevotella sp. CAG:924 str. MGS:924 is a Gram-negative bacterium that belongs to the genus Prevotella, which is commonly associated with various environments, including the human microbiome. As a member of this genus, Prevotella sp. CAG:924 str. MGS:924 is likely to exhibit anaerobic metabolism, often thriving in oxygen-limited environments. ↵↵Prevotella species are known for their role in the degradation of complex carbohydrates and proteins, contributing to the fermentation processes in the gut microbiota. Given the ecological niche typically occupied by this genus, Prevotella sp. CAG:924 str. MGS:924 may play a significant role in the digestion of dietary fibers, thus influencing nutrient absorption and overall gut health. ↵↵Moreover, the presence of Gram-negative cell wall structures in this strain may confer specific physiological characteristics, such as resistance to certain antimicrobial agents, although the specifics of such interactions require further investigation. The unique metabolic capabilities and ecological roles of Prevotella sp. CAG:924 str. MGS:924 underscore its potential importance in maintaining gut homeostasis and influencing host-microbe interactions. Understanding this strain's specific contributions to microbial communities may provide insights into its functional role in health and disease, particularly in relation to diet and metabolism." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:924 Negative 1262938 CAXK000000000.1 Bac0005510 Roseburia sp. CAG:182 str. MGS:182 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:182 1262942 CBKT000000000.1 Bac0005511 Roseburia sp. CAG:380 str. MGS:380 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:380 1262946 CBGD000000000.1 Bac0005512 Roseburia sp. CAG:45 str. MGS:45 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:45 1262947 CBET000000000.1 Bac0005513 Roseburia sp. CAG:471 str. MGS:471 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:471 1262948 CBIB000000000.1 Bac0005514 Roseburia sp. CAG:50 str. MGS:50 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:50 1262949 CBAK000000000.1 Bac0005515 Ruminococcus sp. CAG:108 str. MGS:108 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:108 1262950 CAXD000000000.1 Bac0005516 Ruminococcus sp. CAG:254 str. MGS:254 "Ruminococcus sp. CAG:254 str. MGS:254 is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, primarily inhabiting the intestinal microflora of animals. This strain is characterized by its spherical shape, which is typical of cocci, and its metabolic capabilities allow it to utilize organic compounds as energy sources. ↵↵Ruminococcus species are often recognized for their role in the fermentation of complex carbohydrates, contributing to the overall digestive processes within their host's gut environment. As part of the diverse microbial community in the gastrointestinal tract, Ruminococcus sp. CAG:254 str. MGS:254 likely participates in the breakdown of dietary fibers and the production of short-chain fatty acids, which are important for gut health and host metabolism.↵↵The presence of Ruminococcus sp. in the intestinal microflora can be indicative of a healthy gut ecosystem, as these microbes often interact with other gut inhabitants and play a role in maintaining the balance of gut microbiota. Understanding the specific functions of Ruminococcus sp. CAG:254 str. MGS:254 may provide insights into its contributions to host digestion and the potential implications for nutritional health in animals. Further studies could elucidate its interactions with other microbial species and its overall impact on the host's metabolic processes." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:254 Positive Cocci No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1262953 CBAR000000000.1 Bac0005517 Ruminococcus sp. CAG:403 str. MGS:403 "Ruminococcus sp. CAG:403 str. MGS:403 is a Gram-positive, cocci-shaped bacterium that is part of the diverse microbial community found in the gastrointestinal tract of ruminants. As a member of the genus Ruminococcus, it is presumed to play a role in the degradation of complex carbohydrates, contributing to the fermentation processes that are essential for the digestion of plant materials in these hosts. ↵↵The cocci morphology suggests that this bacterium may form clusters or chains, which is characteristic of many members within this genus. The Gram-positive nature of Ruminococcus sp. CAG:403 str. MGS:403 implies the presence of a thick peptidoglycan layer in its cell wall, a feature that can influence its resistance to environmental stresses and its interactions with other gut microbes.↵↵While specific metabolic pathways and enzymatic capabilities of Ruminococcus sp. CAG:403 str. MGS:403 are not detailed in the provided traits, its association with fiber degradation indicates a potential for producing short-chain fatty acids that can be beneficial for the host's health. The unique combination of its cocci shape and Gram-positive characteristics may facilitate diverse interactions within the gut microbiome, contributing to the overall stability and functionality of the microbial ecosystem in ruminants. Understanding the role of such bacteria can provide insights into the complex interplay of gut microbiota and their impacts on host nutrition and health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:403 Positive Cocci 1262958 CBIS000000000.1 Bac0005518 Ruminococcus sp. CAG:563 str. MGS:563 "Ruminococcus sp. CAG:563 str. MGS:563 is a Gram-positive, cocci-shaped bacterium classified as a chemoheterotroph, primarily residing within the intestinal microflora of animals. This microbe plays a significant role in the complex ecosystem of the gut, where it contributes to the fermentation of dietary fibers and other organic materials, ultimately aiding in nutrient absorption and digestion.↵↵The presence of Ruminococcus sp. in the intestinal tract suggests its potential involvement in the maintenance of gut health and homeostasis. As a member of the gut microbiota, this strain may participate in interactions with other microbial species, influencing the overall composition and metabolic functions of the intestinal community. Its chemoheterotrophic nature indicates that it derives energy from organic compounds, highlighting its adaptability to the nutrient-rich environment of the animal intestine.↵↵Furthermore, understanding the specific contributions of Ruminococcus sp. CAG:563 str. MGS:563 to the gut ecosystem can provide insights into its potential roles in fermentation processes and its impact on host metabolism. Given the importance of the gut microbiota in overall health, further investigation into this strain may elucidate its functional significance and interactions within the animal intestinal microflora. Such studies could also inform broader ecological perspectives on microbial symbiosis and its implications for host health and disease." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:563 Positive Cocci No 1 Chemoheterotroph Animal Intestinal Microflora 1262961 CBCR000000000.1 Bac0005519 Ruminococcus sp. CAG:57 str. MGS:57 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:57 1262962 CBFS000000000.1 Bac0005520 Ruminococcus sp. CAG:579 str. MGS:579 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:579 1262963 CBCK000000000.1 Bac0005521 Erysipelotrichaceae bacterium CAG:64 str. MGS:64 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium CAG:64 1262981 CBGA000000000.1 Bac0005522 Lachnospiraceae bacterium CAG:364 str. MGS:364 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium CAG:364 1262983 CBER000000000.1 Bac0005523 Proteobacteria bacterium CAG:139 str. MGS:139 Pseudomonadati Pseudomonadota Proteobacteria bacterium CAG:139 1262986 CBBV000000000.1 Bac0005524 Firmicutes bacterium CAG:95 str. MGS:95 Bacillati Bacillota Firmicutes bacterium CAG:95 1262988 CBKF000000000.1 Bac0005525 Firmicutes bacterium CAG:83 str. MGS:83 Bacillati Bacillota Firmicutes bacterium CAG:83 1262992 CAWX000000000.1 Bac0005526 Firmicutes bacterium CAG:791 str. MGS:791 Bacillati Bacillota Firmicutes bacterium CAG:791 1262993 CAWT000000000.1 Bac0005527 Firmicutes bacterium CAG:65 str. MGS:65 Bacillati Bacillota Firmicutes bacterium CAG:65 1262994 CBCW000000000.1 Bac0005528 Firmicutes bacterium CAG:103 str. MGS:103 Bacillati Bacillota Firmicutes bacterium CAG:103 No 1 Chemoheterotroph Host Gut 1262999 CAWL000000000.1 Bac0005529 Firmicutes bacterium CAG:114 str. MGS:114 Bacillati Bacillota Firmicutes bacterium CAG:114 1263001 CAXW000000000.1 Bac0005530 Firmicutes bacterium CAG:129 str. MGS:129 Bacillati Bacillota Firmicutes bacterium CAG:129 1263003 CBAB000000000.1 Bac0005531 Firmicutes bacterium CAG:145 str. MGS:145 Bacillati Bacillota Firmicutes bacterium CAG:145 No 1 Chemoheterotroph 1263005 CBCX000000000.1 Bac0005532 Firmicutes bacterium CAG:176 str. MGS:176 Bacillati Bacillota Firmicutes bacterium CAG:176 1263007 CBCO000000000.1 Bac0005533 Firmicutes bacterium CAG:212 str. MGS:212 Bacillati Bacillota Firmicutes bacterium CAG:212 1263009 CBBF000000000.1 Bac0005534 Firmicutes bacterium CAG:24 str. MGS:24 Bacillati Bacillota Firmicutes bacterium CAG:24 1263012 CAXU000000000.1 Bac0005535 Firmicutes bacterium CAG:240 str. MGS:240 Bacillati Bacillota Firmicutes bacterium CAG:240 1263013 CBDR000000000.1 Bac0005536 Firmicutes bacterium CAG:308 str. MGS:308 Bacillati Bacillota Firmicutes bacterium CAG:308 1263016 CBHE000000000.1 Bac0005537 Firmicutes bacterium CAG:341 str. MGS:341 Bacillati Bacillota Firmicutes bacterium CAG:341 1263019 CBHK000000000.1 Bac0005538 Firmicutes bacterium CAG:424 str. MGS:424 Bacillati Bacillota Firmicutes bacterium CAG:424 1263022 CBFI000000000.1 Bac0005539 Firmicutes bacterium CAG:466 str. MGS:466 Bacillati Bacillota Firmicutes bacterium CAG:466 1263025 CBFA000000000.1 Bac0005540 Firmicutes bacterium CAG:534 str. MGS:534 Bacillati Bacillota Firmicutes bacterium CAG:534 1263027 CBHC000000000.1 Bac0005541 Firmicutes bacterium CAG:555 str. MGS:555 Bacillati Bacillota Firmicutes bacterium CAG:555 No 1 1263030 CAWW000000000.1 Bac0005542 Firmicutes bacterium CAG:56 str. MGS:56 Bacillati Bacillota Firmicutes bacterium CAG:56 1263031 CBCG000000000.1 Bac0005543 Akkermansia muciniphila CAG:154 "Akkermansia muciniphila CAG:154 is a Gram-negative, anaerobic coccus that typically exists in pairs or as single cells. This microbe thrives at an optimal temperature of 37.0°C, which suggests its adaptation to host-associated environments, likely within the human gastrointestinal tract. As an anaerobe, Akkermansia muciniphila CAG:154 does not require oxygen for growth, highlighting its role in the anaerobic niches of the gut microbiome.↵↵The presence of Akkermansia muciniphila in the gut is linked to mucin metabolism, where it utilizes mucin as a primary carbon source. This capacity may contribute to maintaining gut health by supporting the integrity of the mucosal barrier and modulating host immune responses. The ecological role of Akkermansia muciniphila CAG:154 in the gut underscores its potential significance in symbiotic relationships within the microbiome, particularly in balancing gut homeostasis and possibly influencing the host's metabolic processes." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1263034 CBDW000000000.1 Bac0005544 Alistipes finegoldii CAG:68 "Alistipes finegoldii CAG:68 is a Gram-negative, anaerobic bacterium that is part of the human gut microbiota. This species is characterized by its inability to thrive in the presence of oxygen, which is indicative of its adaptation to the anaerobic conditions typically found in the human gastrointestinal tract. The anaerobic metabolic processes employed by A. finegoldii may contribute to its role in the complex interactions that occur within the gut microbiome, particularly in relation to the fermentation of dietary fibers and other substrates.↵↵As a member of the gut microbiota, A. finegoldii is believed to participate in various metabolic pathways that may influence host health, although specific functional attributes of this strain remain to be fully elucidated. The presence of A. finegoldii and its interactions with other gut microbes could potentially play a role in maintaining gut homeostasis and supporting immune functions. Further research into the metabolic capabilities and ecological roles of A. finegoldii CAG:68 will be essential to better understand its contributions to gut health and its implications for human health outcomes. The unique anaerobic lifestyle of this bacterium underscores the importance of oxygen-free environments in fostering diverse microbial communities within the human intestine." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes finegoldii Negative Anaerobe 1263035 CBAO000000000.1 Bac0005545 Alistipes putredinis CAG:67 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes putredinis 1263036 CBJI000000000.1 Bac0005546 Phocaeicola coprocola CAG:162 str. MGS:162 "Phocaeicola coprocola CAG:162 str. MGS:162 is a Gram-negative, strictly anaerobic bacterium. This microbe is characterized by its inability to utilize oxygen for growth, positioning it within the anoxic environments typical of the gastrointestinal tracts of various animals, where it likely contributes to the complex microbial ecosystem. The Gram-negative nature of P. coprocola indicates the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions with the host microbiota.↵↵Given its anaerobic requirements, P. coprocola likely thrives in environments that are rich in organic matter and devoid of oxygen, engaging in fermentation processes that contribute to the breakdown of complex carbohydrates. This metabolic capability suggests a role in nutrient cycling within the gut, potentially aiding in the digestion of dietary fibers and other indigestible substrates. ↵↵Understanding the specific metabolic pathways employed by P. coprocola could provide insights into its ecological niche and its potential interactions with other gut microbiota members. The presence of such anaerobic microbes underscores the importance of microbial diversity in maintaining gut health and function, as they can influence the overall metabolic output of the gut microbiome and the host's nutritional status." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprocola Negative Anaerobe 1263040 CBCJ000000000.1 Bac0005547 Phocaeicola coprophilus CAG:333 str. MGS:333 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprophilus 1263041 CBFM000000000.1 Bac0005548 Bacteroides eggerthii CAG:109 str. MGS:109 "Bacteroides eggerthii CAG:109 str. MGS:109 is a Gram-negative, anaerobic bacterium that is part of the human gut microbiota. This strain is characterized by its ability to thrive in oxygen-depleted environments, which is typical for many members of the Bacteroides genus. As an anaerobe, B. eggerthii likely plays a crucial role in the fermentation of complex carbohydrates, contributing to the overall metabolic processes within the gastrointestinal tract. ↵↵The Gram-negative cell wall structure of B. eggerthii is marked by a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the host environment and other microbial community members. Bacteroides species are well-known for their enzymatic capabilities, particularly in breaking down polysaccharides that are otherwise indigestible by the host. This biodegradative function not only aids in nutrient absorption but also impacts the overall health of the gut ecosystem by producing short-chain fatty acids, which can serve as energy sources for colonocytes.↵↵Understanding the specific metabolic pathways and interactions of Bacteroides eggerthii CAG:109 str. MGS:109 within the gut microbiome may provide insights into its potential contributions to host health and its role in maintaining intestinal homeostasis. Further exploration of this strain could illuminate its ecological significance in relation to dietary influences and microbial diversity within the human gut." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides eggerthii Negative Anaerobe 1263043 CAYK000000000.1 Bac0005549 Bacteroides finegoldii CAG:203 str. MGS:203 "Bacteroides finegoldii CAG:203 str. MGS:203 is a Gram-negative, strictly anaerobic bacterium. This species is part of the Bacteroides genus, which is predominantly found in the gastrointestinal tract of humans and other animals, playing a crucial role in the digestion of complex carbohydrates. The Gram-negative nature of B. finegoldii indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. ↵↵As an anaerobe, B. finegoldii thrives in environments devoid of oxygen, suggesting that it may be involved in various anaerobic metabolic processes. This characteristic is critical for its survival in the gut, where oxygen levels are low. Bacteroides species, including B. finegoldii, are known to contribute to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut health and overall metabolism.↵↵The unique ecological niche occupied by B. finegoldii highlights its potential role in maintaining gut homeostasis and influencing host metabolism. Understanding the metabolic capabilities and interactions of this strain within the gut microbiome could provide insights into its contributions to human health, particularly in relation to dietary influences and microbial community dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides finegoldii Negative Anaerobe 1263045 CBFL000000000.1 Bac0005550 Bacteroides fragilis CAG:47 str. MGS:47 "Bacteroides fragilis CAG:47 str. MGS:47 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives optimally at a temperature of 37.0°C. This strain is classified as a chemoorganotroph, utilizing organic compounds as its energy source, and is strictly anaerobic, indicating that it grows in environments devoid of oxygen. ↵↵As a member of the Bacteroides genus, B. fragilis plays a significant role in the human gut microbiota, where it is frequently found in host-associated habitats. The anaerobic nature of this organism suggests its adaptation to the oxygen-free environment of the intestines, where it contributes to the complex microbial community essential for digestion and metabolism. Given its specific habitat, B. fragilis CAG:47 str. MGS:47 is likely involved in various biochemical processes, including the fermentation of polysaccharides and the production of short-chain fatty acids, which are crucial for maintaining gut health and homeostasis.↵↵This strain exemplifies the intricate relationships between host-associated microbiota and their hosts, highlighting the importance of anaerobic microorganisms in maintaining gut function and overall health. Understanding the traits of B. fragilis CAG:47 str. MGS:47 can provide insights into the metabolic pathways that support its survival and function within the human microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1263046 CBHA000000000.1 Bac0005551 Bacteroides fragilis CAG:558 str. MGS:558 "Bacteroides fragilis CAG:558 str. MGS:558 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates an anaerobic mode of life. This strain thrives optimally at 37.0°C, which is consistent with the physiological temperature of the human body, indicating its adaptation to host-associated environments. As a chemoorganotroph, B. fragilis CAG:558 utilizes organic compounds as its energy source, reflecting its capacity to metabolize complex carbohydrates and other organic materials found within the intestinal microbiome.↵↵This species is part of the Bacteroidetes phylum and is known for its significant presence in the gut microbiota of humans and other mammals, where it plays a crucial role in the breakdown of polysaccharides and the fermentation of dietary fibers. The anaerobic nature of B. fragilis CAG:558 suggests that it thrives in low-oxygen conditions typically found in the gastrointestinal tract, where it contributes to maintaining a balanced microbial ecosystem.↵↵Furthermore, the unique ecological role of Bacteroides fragilis CAG:558 may extend beyond mere fermentation; it could also serve as a mediator of interactions within the gut microbiome, influencing nutrient absorption and immune responses in the host. This highlights the potential importance of this strain in understanding the complex relationships between gut microbiota and host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1263047 CAZX000000000.1 Bac0005552 Bacteroides ovatus CAG:22 str. MGS:22 "Bacteroides ovatus CAG:22 str. MGS:22 is a Gram-negative, anaerobic bacterium belonging to the genus Bacteroides, which is notable for its role in the human gut microbiome. As an anaerobe, B. ovatus CAG:22 str. MGS:22 thrives in low-oxygen environments, making it well-suited for survival and metabolic activity within the gastrointestinal tract. This strain is part of a larger group of Bacteroides species that are known to contribute to the breakdown of complex carbohydrates, facilitating nutrient absorption and energy extraction from dietary fibers. ↵↵Bacteroides species, including B. ovatus, are recognized for their enzymatic capabilities, particularly in the hydrolysis of polysaccharides, which can help maintain gut health by promoting a balanced microbiota and potentially influencing host metabolism. The capacity of B. ovatus CAG:22 str. MGS:22 to function effectively in an anaerobic niche underscores its potential importance in the fermentation processes that occur in the intestines, leading to short-chain fatty acid production, which is critical for colon health and has broader implications for metabolic health.↵↵Overall, the presence and activity of Bacteroides ovatus CAG:22 str. MGS:22 within the gut ecosystem reflect its integral role in carbohydrate fermentation, which may have significant implications for host nutrient availability and the overall balance of the gut microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe 1263050 CBDX000000000.1 Bac0005553 Bacteroides plebeius CAG:211 str. MGS:211 "Bacteroides plebeius CAG:211 str. MGS:211 is a Gram-negative, nonsporulating rod-shaped bacterium that primarily inhabits the intestinal microflora of animals. This microbe exhibits an anaerobic metabolism, relying on chemoheterotrophy for energy acquisition, which is characteristic of many members within the Bacteroidetes phylum. The optimal growth temperature for Bacteroides plebeius CAG:211 is 37.0°C, aligning with the physiological conditions typically found in the mammalian gut.↵↵As a component of the intestinal microbiota, Bacteroides plebeius plays a crucial role in the digestion of complex polysaccharides and contributes to the overall metabolic processes within the gut ecosystem. Its anaerobic nature suggests a specialized adaptation to thrive in environments with limited oxygen availability, such as the colon, where it may interact with other microbial species to maintain gut homeostasis.↵↵The presence of Bacteroides plebeius CAG:211 in the intestinal microbiome underscores the significance of anaerobic bacteria in nutrient breakdown and energy harvest from dietary components. Furthermore, its functional role may extend to influencing host immune responses and maintaining the integrity of the gut barrier, highlighting the intricate relationship between host and microbiota. Understanding the specific contributions of this strain within the diverse community of gut microbes could provide insights into the dynamics of intestinal health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1263052 CBAT000000000.1 Bac0005554 Bacteroides uniformis CAG:3 str. MGS:3 "Bacteroides uniformis CAG:3 str. MGS:3 is a Gram-negative anaerobic bacterium belonging to the Bacteroides genus. This microbe is characterized by its inability to survive in the presence of oxygen, indicating a strict anaerobic metabolism. Bacteroides uniformis species are typically found in the gastrointestinal tract of humans and other animals, contributing to the complex microbiota involved in digestion and fermentation processes.↵↵Gram-negative bacteria, such as Bacteroides uniformis, possess a unique cell wall structure that includes a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in interactions with the host's immune system. The anaerobic nature of B. uniformis suggests its adaptation to environments devoid of oxygen, where it likely engages in fermentative metabolism, producing short-chain fatty acids and other metabolites beneficial for host health.↵↵Understanding the specific metabolic pathways and interactions of B. uniformis CAG:3 str. MGS:3 within the gut microbiome is essential, as it may have implications for digestion and overall metabolic health. Furthermore, the presence of such anaerobic bacteria is indicative of a balanced gut ecosystem, which is crucial for maintaining homeostasis and potentially influencing host responses to dietary changes. The study of Bacteroides uniformis CAG:3 str. MGS:3 could offer insights into the roles that anaerobic microbes play in gut health and their contributions to metabolic functions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe 1263055 CBIC000000000.1 Bac0005555 Bifidobacterium bifidum CAG:234 str. MGS:234 "Bifidobacterium bifidum CAG:234 str. MGS:234 is a Gram-positive, nonsporulating rod-shaped bacterium that is an anaerobe and is primarily associated with host environments. This species is part of the genus Bifidobacterium, which is known for its role in the gut microbiota of various mammals, including humans. ↵↵As a member of the Bifidobacteriaceae family, B. bifidum is recognized for its contribution to the maintenance of a healthy intestinal microbiome, where it plays a critical role in carbohydrate fermentation, producing beneficial short-chain fatty acids. Its anaerobic nature suggests adaptations that allow it to thrive in low-oxygen environments typical of the gastrointestinal tract.↵↵The habitat of B. bifidum as host-associated indicates its close relationship with its host organism, which may influence its metabolic pathways and ecological interactions within the microbiome. This symbiotic relationship highlights the importance of B. bifidum in digestive processes and immune modulation, as it may help to outcompete pathogenic microorganisms and maintain gut homeostasis.↵↵In summary, Bifidobacterium bifidum CAG:234 str. MGS:234 exemplifies the intricate balance of microbial communities within the gastrointestinal tract, showcasing how specific traits enable it to contribute positively to host health. Further exploration of its metabolic capabilities and interactions within the host microbiome could provide insights into its potential applications in probiotic therapies." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1263058 CBDF000000000.1 Bac0005556 Bifidobacterium pseudocatenulatum CAG:263 str. MGS:263 "Bifidobacterium pseudocatenulatum CAG:263 str. MGS:263 is a Gram-positive anaerobic bacterium belonging to the genus Bifidobacterium. This strain is characterized by its ability to thrive in low-oxygen environments, which is typical for many members of the Bifidobacterium genus. Bifidobacterium pseudocatenulatum is notable for its role in the gastrointestinal microbiota, where it is thought to contribute to the maintenance of gut health and the modulation of immune responses.↵↵As an anaerobe, B. pseudocatenulatum CAG:263 str. MGS:263 relies on fermentation processes for energy production, utilizing carbohydrates as substrates. This metabolic pathway not only supports its growth but may also result in the production of beneficial metabolites, such as short-chain fatty acids (SCFAs), which are known to play a crucial role in gut health by providing energy to colonic cells and regulating inflammation.↵↵Exploring the ecological role of Bifidobacterium pseudocatenulatum CAG:263 str. MGS:263 in the gut ecosystem could provide insights into its potential interactions with other microbial communities and its contributions to host health. Understanding its metabolic capabilities and interactions with dietary components may also shed light on its functional significance in the human microbiome. Overall, this strain exemplifies the complex interplay between anaerobic bacteria and the host environment, highlighting the importance of gut microbiota in overall health and disease prevention." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum Positive Anaerobe 1263060 CBEV000000000.1 Bac0005557 Clostridium clostridioforme CAG:132 str. MGS:132 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis anaerobic 1263065 CBDY000000000.1 Bac0005558 [Clostridium] leptum CAG:27 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae [Clostridium] leptum 1263068 CBEP000000000.1 Bac0005559 [Clostridium] nexile CAG:348 "[Clostridium] nexile CAG:348 is an anaerobic, sporulating, rod-shaped bacterium that derives its energy through chemoheterotrophy. This organism is notable for its adaptability to multiple habitats, suggesting a versatile ecological niche. Its anaerobic nature indicates that it thrives in environments devoid of oxygen, which is typical for many members of the Clostridium genus. ↵↵As a sporulating bacterium, [C. nexile] CAG:348 possesses the ability to form spores, a trait that allows it to endure adverse environmental conditions and potentially expand its habitat range. The ability to utilize various organic substrates for energy further highlights its ecological flexibility and potential role in nutrient cycling within its environments. ↵↵The diverse habitats of [C. nexile] CAG:348 could encompass anaerobic zones in soil, sediments, or decaying organic matter, underscoring its potential contributions to biogeochemical processes in these ecosystems. This adaptability not only enhances its survival but also suggests that [C. nexile] CAG:348 may play a role in the decomposition of organic materials, thereby influencing the dynamics of microbial communities and nutrient availability in its ecological niches." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalimonas Faecalimonas nexilis Rod No 1 Anaerobic Chemoheterotroph Multiple Sporulating 1263069 CBEY000000000.1 Bac0005560 Coprococcus comes CAG:19 str. MGS:19 "Coprococcus comes CAG:19 str. MGS:19 is a Gram-positive, anaerobic coccus, which highlights its adaptation to environments devoid of oxygen. This microbe exhibits a characteristic spherical shape, typical of cocci, and plays a significant role in various anaerobic ecosystems. As a member of the genus Coprococcus, it is expected to be involved in the fermentation of complex carbohydrates, contributing to the metabolic processes within the gut microbiome or similar environments where it resides.↵↵The anaerobic nature of Coprococcus comes CAG:19 str. MGS:19 indicates that it thrives in conditions where oxygen is limited, a trait that is essential for its survival and metabolic efficiency. This adaptation may allow the organism to participate in the degradation of organic matter, thus influencing the carbon cycle within its ecological niche. ↵↵Moreover, the presence of such anaerobic cocci is often indicative of a balanced microbial community, where they may interact synergistically with other microbial populations to facilitate digestive processes, particularly in the intestines of higher organisms. Investigating the specific metabolic pathways utilized by this strain could provide further insights into its ecological role in nutrient cycling and its potential contributions to gut health. Overall, Coprococcus comes CAG:19 str. MGS:19 exemplifies the diverse functional capabilities of anaerobic bacteria in maintaining ecological stability within their habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Allocoprococcus Allocoprococcus comes Positive Cocci Anaerobe 1263070 CBEG000000000.1 Bac0005561 Dialister invisus CAG:218 str. MGS:218 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister invisus 1263072 CBAF000000000.1 Bac0005562 Dorea formicigenerans CAG:28 str. MGS:28 "Dorea formicigenerans CAG:28 str. MGS:28 is a Gram-positive, anaerobic bacterium that is part of the diverse microbiota typically found in the gastrointestinal tract of humans and other mammals. This organism's anaerobic nature suggests that it thrives in low-oxygen environments, where it likely participates in various metabolic processes that contribute to the fermentation of complex carbohydrates. ↵↵Dorea formicigenerans is characterized by its ability to utilize a range of substrates, which may include polysaccharides, thereby playing a crucial role in the digestion of dietary fibers. As a member of the gut microbiome, it is positioned to contribute to the maintenance of intestinal health and the modulation of host immune responses. The metabolic activities of Dorea formicigenerans could also influence the production of short-chain fatty acids, which are important for colon health and may serve as energy sources for colonic cells.↵↵Given its anaerobic lifestyle and metabolic capabilities, Dorea formicigenerans CAG:28 str. MGS:28 may serve as an important player in the complex interactions within the gut ecosystem, where it interacts with other microbial inhabitants and contributes to the overall stability and functionality of the microbiome. Its presence highlights the significance of anaerobic bacteria in gastrointestinal health and the intricate balance of microbial communities." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe 1263073 CBFN000000000.1 Bac0005563 [Eubacterium] siraeum CAG:80 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae [Eubacterium] siraeum 1263080 CBFJ000000000.1 Bac0005564 Lactobacillus ruminis CAG:367 str. MGS:367 "Lactobacillus ruminis CAG:367 str. MGS:367 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic characteristics, allowing it to thrive in both aerobic and anaerobic environments. This species is part of the genus Lactobacillus, which is well-known for its role in the fermentation of carbohydrates and the production of lactic acid. The ability of L. ruminis CAG:367 to adapt to varying oxygen conditions may facilitate its survival in diverse habitats, particularly in the gastrointestinal tracts of ruminant animals, where it may play a significant role in the fermentation processes that aid in digestion.↵↵The facultative anaerobic nature of this strain suggests that it can utilize oxygen when available but can also switch to fermentation pathways under anaerobic conditions, a trait that is essential for maintaining metabolic flexibility in variable environments. Additionally, its rod shape contributes to its ecological niche, as this morphology is often associated with efficient colonization and interaction within microbial communities.↵↵Overall, L. ruminis CAG:367 str. MGS:367 exemplifies the adaptability of lactobacilli in complex ecosystems, particularly in the rumen of livestock, where they may contribute to the intricate microbial interactions that enhance nutrient availability and digestion. This adaptability underscores the potential importance of this strain in agricultural microbiology and its applications in improving livestock health and productivity." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ruminis Positive Rod Facultative anaerobe 1263085 CBFO000000000.1 Bac0005565 Methanobrevibacter smithii CAG:186 str. MGS:186 "Methanobrevibacter smithii CAG:186 str. MGS:186 is a Gram-positive, rod-shaped archaeon that typically forms pairs or chains. This strain thrives optimally at a temperature of 37.0°C and is classified as a lithotrophic organism, utilizing inorganic compounds as its energy source. Methanobrevibacter smithii is an obligate anaerobe, indicating that it requires an oxygen-free environment for growth and metabolism.↵↵This archaeon is known to inhabit a variety of environments, suggesting its adaptability to diverse ecological niches. While specific habitat details are not provided, the multiple environments associated with M. smithii may include anaerobic sites such as the gastrointestinal tracts of various animals, where it plays a role in methane production through the fermentation of substrates.↵↵Interestingly, the ability of Methanobrevibacter smithii to form pairs and chains may enhance its stability in dynamic environments and facilitate metabolic interactions with other microbial species present in the same habitat. This unique arrangement could be significant for its survival and function in complex microbial communities, particularly in the context of symbiotic relationships within the gut microbiome, where it contributes to the overall metabolic processes and energy balance." Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii Positive Rod No 1 Anaerobe 37 Lithotroph Mesophilic Multiple Free living Pairs - Chains 1263088 CBKP000000000.1 Bac0005566 Odoribacter laneus CAG:561 str. MGS:561 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter laneus 1263089 CBAQ000000000.1 Bac0005567 Segatella copri CAG:164 "Segatella copri CAG:164 is a Gram-negative, anaerobic bacterium characterized by its inability to thrive in the presence of oxygen. As an anaerobe, it relies on fermentation or anaerobic respiration for its metabolic processes, which is a significant aspect of its ecological niche. The Gram-negative classification indicates that the bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that can influence its susceptibility to certain antibiotics and its interactions with host organisms.↵↵While the specific ecological roles and interactions of Segatella copri CAG:164 remain to be fully elucidated, its anaerobic nature suggests it may inhabit environments with low oxygen availability, such as the human gut or other anaerobic ecosystems. The presence of such bacteria in these niches is crucial for various biological processes, including fermentation, nutrient cycling, and maintaining the overall health of the microbiome. ↵↵This organism's adaptation to anaerobic conditions may also play a role in its potential contributions to metabolic processes that influence host physiology, such as the production of short-chain fatty acids, which are important for gut health. Further research is needed to better understand the specific functions and interactions of Segatella copri CAG:164 within its ecological context." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe 1263102 CBCH000000000.1 Bac0005568 Mediterraneibacter gnavus CAG:126 "Mediterraneibacter gnavus CAG:126 is a Gram-positive, nonsporulating coccus that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is classified as a chemoheterotroph, utilizing organic compounds for energy and growth. Found primarily in the intestinal microflora of animals, M. gnavus plays a role in the complex microbial ecosystem of the gut.↵↵The presence of M. gnavus in the intestinal environment suggests its potential contribution to various metabolic processes, including the fermentation of carbohydrates and the breakdown of complex organic materials. Its anaerobic nature indicates that it may interact with various other gut microbes that also thrive in low-oxygen conditions, potentially influencing the overall balance and functionality of the gut microbiome.↵↵The adaptation of M. gnavus to the intestinal environment highlights its potential role in maintaining gut health and homeostasis. Given its specific habitat and metabolic capabilities, further research may elucidate its interactions with both host and other microbial species, potentially revealing insights into the microbe's contributions to digestive processes or its involvement in the modulation of the intestinal environment under varying conditions." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1263106 CBAL000000000.1 Bac0005569 Blautia obeum CAG:39 "Blautia obeum CAG:39 is a Gram-positive, nonsporulating coccus that plays a role as a chemoheterotroph within the intestinal microflora of animals. This species thrives in anaerobic environments, which is characteristic of the gut microbiome, where it contributes to the complex ecosystem of gut bacteria.↵↵As a member of the intestinal microbiota, B. obeum CAG:39 is likely involved in various metabolic processes, aiding in the fermentation of dietary fibers and the production of short-chain fatty acids, which are essential for maintaining gut health and host metabolism. Its ability to utilize a range of organic substrates for energy underscores its adaptability and importance in the digestive processes of host organisms.↵↵Given its habitat and metabolic capabilities, B. obeum CAG:39 may play a role in modulating the gut environment, influencing microbial diversity, and contributing to the overall homeostasis of the intestinal ecosystem. Understanding the functional roles and interactions of this species within the gut microbiome can provide insights into its potential impact on host health and disease states, particularly in the context of dysbiosis. Further research on B. obeum CAG:39 may illuminate its specific contributions to gut health and its dynamics within the complex microbial community of the intestine." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1263107 CBHW000000000.1 Bac0005570 Streptococcus thermophilus CAG:236 str. MGS:236 "Streptococcus thermophilus CAG:236 str. MGS:236 is a Gram-positive, coccoid bacterium characterized by its arrangement in chains or pairs and its anaerobic metabolism. This strain exhibits optimal growth at 45.0°C, indicating its thermophilic nature and adaptation to high-temperature environments. S. thermophilus is commonly found in diverse habitats, suggesting its ability to thrive in various ecological niches.↵↵As an anaerobe, S. thermophilus CAG:236 str. MGS:236 likely participates in fermentation processes, which can be significant in environments where oxygen is limited. This metabolic trait not only enables the organism to survive in anaerobic conditions but may also play a role in the production of metabolites beneficial for other microbial communities in its habitat. Further studies could reveal the specific interactions and contributions of this strain within microbial consortia, particularly in thermally active ecosystems or in food fermentation processes, where its unique traits may enhance the flavor and preservation of dairy products." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1263110 CBBT000000000.1 Bac0005571 Sutterella wadsworthensis CAG:135 str. MGS:135 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella wadsworthensis 1263111 CAZN000000000.1 Bac0005572 Microbacterium sp. SA39 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. SA39 1263625 JXRU00000000.1 Bac0005573 Bibersteinia trehalosi USDA-ARS-USMARC-190 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Bibersteinia Bibersteinia trehalosi 1263832 NZ_CP006956.1 Bac0005574 Stutzerimonas chloritidismutans AW-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas chloritidismutans 1263865 AOFQ00000000.1 Bac0005575 Rhodopirellula europaea 6C Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula europaea 1263867 ANMO00000000.1 Bac0005576 Aporhodopirellula sallentina SM41 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Aporhodopirellula Aporhodopirellula sallentina 1263870 ANOH00000000.1 Bac0005577 Mycoplasmopsis meleagridis ATCC 25294 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis meleagridis 1264554 JZXN00000000.1 Bac0005578 Ralstonia pickettii OR214 "Ralstonia pickettii OR214 is a Gram-negative, rod-shaped bacterium that functions as a heterotroph, utilizing organic compounds as its energy source. This microbe is known to inhabit multiple environments, indicating its versatility and adaptability to varying ecological niches. As an aerobic organism, R. pickettii OR214 requires oxygen for growth and metabolism, which influences its distribution in environments where oxygen availability is a key factor. Such habitats may include soil, water, and biofilms, allowing R. pickettii OR214 to thrive in both natural and engineered settings.↵↵The ability of R. pickettii OR214 to live in diverse habitats suggests that it may play a role in nutrient cycling and microbial community dynamics. Its heterotrophic nature allows it to utilize a wide range of organic substrates, potentially contributing to the breakdown of organic materials in its environment. This capability underscores the importance of R. pickettii OR214 in various ecological processes, including decomposition and organic matter turnover. Further investigation into its metabolic pathways and interactions with other microorganisms could reveal more about its ecological roles and contributions to its habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii Negative Rod Yes 1 2 Aerobe Heterotroph - Heterotroph Mesophilic Multiple Free living 1264675 APMQ00000000.1 Bac0005579 Tritonibacter mobilis F1926 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tritonibacter Tritonibacter mobilis 1265309 NZ_CP015233.1 Bac0005580 Mycobacterium arosiense ATCC BAA-1401 = DSM 45069 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium arosiense 1265311 MVHG00000000.1 Bac0005581 Pseudohaliea rubra DSM 19751 "Pseudohaliea rubra DSM 19751 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This organism is part of a diverse group of microorganisms that are adapted to environments where oxygen is readily available, which may influence its metabolic capabilities and ecological role. ↵↵The Gram-negative classification indicates that Pseudohaliea rubra possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may provide advantages in certain environmental conditions, such as resistance to specific antibiotics or the ability to form biofilms. The rod shape of the bacterium is commonly associated with various functional advantages, including increased surface area for nutrient absorption and mobility in aquatic environments.↵↵The optimal growth temperature of 29.0°C suggests that Pseudohaliea rubra may inhabit mesophilic environments, potentially including soils or water bodies with moderate temperatures. This temperature preference can also indicate its adaptability to specific ecological niches, where it may play a role in nutrient cycling or organic matter decomposition.↵↵Overall, the traits of Pseudohaliea rubra DSM 19751 highlight its adaptation to aerobic conditions and suggest that it may contribute to the microbial diversity and functionality in environments where oxygen is abundant, potentially influencing biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Pseudohaliea Pseudohaliea rubra Gram-negative rod non-motile aerobic 29 mesophilic 1265313 AUVB00000000.1 Bac0005582 Pseudomonas sp. LAIL14HWK12:I11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LAIL14HWK12:I11 1265481 FWZY00000000.1 Bac0005583 Pseudomonas sp. URIL14HWK12:I8 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URIL14HWK12:I8 1265489 FYEI00000000.1 Bac0005584 Paenilisteria riparia FSL S10-1204 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Paenilisteria Paenilisteria riparia 1265816 AODL00000000.1 Bac0005585 Listeria floridensis FSL S10-1187 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria floridensis 1265817 AODF00000000.1 Bac0005586 Listeria aquatica FSL S10-1188 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria aquatica 1265818 AOCG00000000.1 Bac0005587 Listeria grandensis FSL F6-0971 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria grandensis 1265819 AODD00000000.1 Bac0005588 Paenilisteria weihenstephanensis FSL R9-0317 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Paenilisteria Paenilisteria weihenstephanensis 1265845 AODJ00000000.1 Bac0005589 Brochothrix campestris FSL F6-1037 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Brochothrix Brochothrix campestris 1265861 AODH00000000.1 Bac0005590 Streptomyces rimosus subsp. rimosus ATCC 10970 "Streptomyces rimosus subsp. rimosus ATCC 10970 is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its significant role in soil ecosystems. This subspecies is primarily found in soil habitats, where it contributes to the complex interactions within microbial communities. ↵↵As a member of the Streptomyces genus, S. rimosus subsp. rimosus is characterized by its filamentous growth form and the production of a diverse array of secondary metabolites, including antibiotics. While specific metabolic capabilities and interactions with other microorganisms in the soil are not detailed in the available traits, it is widely recognized that members of this genus play a crucial role in biogeochemical cycling and the degradation of organic matter.↵↵The ecological importance of S. rimosus subsp. rimosus extends beyond its individual contributions, as it participates in the intricate web of soil microbial dynamics. Its ability to produce bioactive compounds may influence the composition and diversity of soil microbial communities, potentially affecting plant growth and soil health. The study of this subspecies, therefore, not only enhances our understanding of microbial ecology but also highlights the potential applications of Streptomyces in agricultural and pharmaceutical industries, particularly in the development of natural antibiotics and biocontrol agents." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rimosus Positive soil 1265868 NZ_CP048261.1 Bac0005591 Aurantibacter aestuarii Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aurantibacter Aurantibacter aestuarii 1266046 PXOQ00000000.1 Bac0005592 Nitrospina gracilis 3/211 Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina gracilis 1266370 CAQJ00000000.1 Bac0005593 Glaciihabitans tibetensis str. CGMCC 1.12484 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Glaciihabitans Glaciihabitans tibetensis 1266600 PVTL00000000.1 Bac0005594 Carnobacterium inhibens subsp. gilichinskyi str. WN1359 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium inhibens 1266845 NC_022602.1 Bac0005595 Brachyspira hyodysenteriae ATCC 27164 "Brachyspira hyodysenteriae ATCC 27164 is a Gram-negative, nonsporulating bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is a chemoheterotroph, deriving its energy from organic compounds, and thrives optimally at a temperature of 37.0°C. Brachyspira hyodysenteriae is strictly anaerobic, indicating that it requires an environment devoid of oxygen for growth and metabolic processes.↵↵The habitat of Brachyspira hyodysenteriae is described as multiple, suggesting that it can inhabit various environments, potentially including the gastrointestinal tracts of certain animals. This adaptability to diverse habitats may reflect the organism's evolutionary strategies, allowing it to establish itself in different ecological niches where anaerobic conditions prevail.↵↵Understanding the metabolic and ecological traits of Brachyspira hyodysenteriae is crucial for elucidating its role within microbial communities and its interactions with host organisms. The bacterium's anaerobic lifestyle and chemoheterotrophic nature may influence nutrient cycling in its habitats, contributing to the dynamics of microbial ecosystems. Further investigation into the ecological implications of its metabolic capabilities could provide insights into its interactions with other microbial species and its overall impact on ecosystem health." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae Negative Spirilla Yes 1 2 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Free living Singles Nonsporulating 1266923 NZ_CP016085.2 Bac0005596 Levilactobacillus parabrevis ATCC 53295 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus parabrevis 1267003 AZCZ00000000.1 Bac0005597 Frischella perrara str. PEB0191 "Frischella perrara strain PEB0191 is a Gram-negative, rod-shaped bacterium characterized by its anaerobic metabolism and optimal growth at 37.0°C. This microbe is noteworthy for its adaptation to environments devoid of oxygen, suggesting a potential role in anaerobic processes within its ecological niche. The rod shape of Frischella perrara str. PEB0191 may facilitate its ability to move through viscous environments, which is a common trait among anaerobic bacteria that thrive in diverse habitats, including those rich in organic matter.↵↵Understanding the metabolic capabilities of Frischella perrara str. PEB0191 could provide insights into its potential applications in biotechnology, particularly in bioconversion processes or waste treatment, where anaerobic conditions prevail. The optimal growth temperature of 37.0°C aligns with the thermal conditions found in many natural environments, indicating that this strain may be well adapted to the temperature ranges encountered in host organisms or specific ecological niches.↵↵Overall, the traits of Frischella perrara str. PEB0191 highlight its specialized adaptations to anaerobic conditions, which may contribute to its ecological roles in nutrient cycling and organic matter decomposition in environments where oxygen is limited." Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Frischella Frischella perrara Gram-negative rod anaerobic 37 mesophilic 1267021 NZ_CP009056.1 Bac0005598 Halopenitus malekzadehii Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopenitus Halopenitus malekzadehii 1267564 FNWU00000000.1 Bac0005599 Allosediminivita pacifica str. DSM 29329 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Allosediminivita Allosediminivita pacifica 1267769 QBKN00000000.1 Bac0005600 Aeromonas molluscorum 848 "Aeromonas molluscorum 848 is a Gram-negative, rod-shaped bacterium characterized by its optimal growth temperature of 29.0°C. This microbe is part of the Aeromonas genus, which is known for its diverse physiological traits and adaptability to various environments. The Gram-negative nature of A. molluscorum 848 indicates a complex cell wall structure, comprising a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, which may play a role in its interactions with other organisms and environmental factors.↵↵The rod shape of this bacterium suggests a potential for mobility and colonization in its habitat, which could be aquatic or associated with mollusks, given its species designation. The optimal growth temperature of 29.0°C indicates that A. molluscorum 848 may thrive in moderately warm conditions, possibly reflecting its adaptation to temperate aquatic environments.↵↵In terms of ecological significance, the presence of A. molluscorum 848 in aquatic ecosystems could indicate its role in nutrient cycling, particularly in environments where it interacts with molluscan hosts. Its growth characteristics may allow it to exploit specific niches within these ecosystems, contributing to the overall microbial diversity and functioning of the habitat. Further studies are necessary to elucidate its ecological roles and interactions with other microorganisms and hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas molluscorum Gram-negative rod motile 29 mesophilic 1268236 AQGQ00000000.1 Bac0005601 Pseudoalteromonas luteoviolacea B = ATCC 29581 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 1268239 CAPN00000000.1 Bac0005602 Cobetia sp. MM1IDA2H-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Cobetia Cobetia sp. MM1IDA2H-1 1268241 MUEJ00000000.1 Bac0005603 Pedobacter jejuensis str. TNB23 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter jejuensis 1268550 RBEE00000000.1 Bac0005604 Klebsiella pneumoniae 909957 "Klebsiella pneumoniae 909957 is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements including chains, pairs, and singles. This non-sporulating microbe thrives optimally at 37.0°C, which aligns with the body temperature of many host organisms, indicating its adaptation to a host-associated habitat. As a chemoheterotroph, K. pneumoniae 909957 derives its energy from organic compounds, positioning it within environments rich in organic matter, such as the gastrointestinal tracts of mammals.↵↵Klebsiella pneumoniae is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions. This versatility enables it to colonize diverse niches within host organisms, where it may utilize available oxygen or switch to fermentation processes when oxygen levels are low. The ability to exist in various cellular arrangements may contribute to its adaptability in fluctuating environments, enhancing its survival and potential interactions within the host microbiome.↵↵Overall, the characteristics of K. pneumoniae 909957 suggest that it plays a significant role in the microbial community of its host, potentially influencing nutrient cycling and host health dynamics. Understanding its ecological role could provide insights into the complex interactions within host-associated microbiomes, particularly in relation to nutrient availability and metabolic processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1269006 AXUL00000000.1 Bac0005605 Cutibacterium acnes HL201PA1 "Cutibacterium acnes HL201PA1 is a Gram-positive, rod-shaped bacterium that exhibits anaerobic growth and is nonsporulating. This microbe thrives at an optimal temperature of 37.0°C, indicating its adaptation to a host-associated environment, likely existing in the human skin microbiota. ↵↵As an anaerobe, C. acnes HL201PA1 relies on fermentation processes in the absence of oxygen, which is characteristic of many bacteria found in the human body. This metabolic adaptation allows it to occupy niches within the skin that may be less accessible to aerobic organisms, potentially contributing to its persistence in the microbiome.↵↵The nonsporulating nature of C. acnes HL201PA1 suggests a reliance on stable environmental conditions for survival, as it does not produce spores to withstand extreme stressors. Instead, it may thrive in the relatively consistent conditions of the skin environment, where it interacts with host factors and other microbial species. ↵↵An intriguing aspect of C. acnes HL201PA1 is its role in the skin ecosystem, where it may influence the balance of microbial communities and host health. Understanding the specific interactions and functions of this bacterium within its host-associated habitat could provide insights into its contributions to skin health and disease." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1271528 AODA00000000.1 Bac0005606 Actinokineospora iranica Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora iranica 1271860 FMZZ00000000.1 Bac0005607 Megasphaera sp. NM10 "Megasphaera sp. NM10 is a nonsporulating, fermentative microbe classified within the genus Megasphaera. This organism is a chemoheterotroph, primarily deriving its energy from organic compounds and playing a significant role in various anaerobic environments. Megasphaera sp. NM10 has been identified in multiple habitats, including the gastrointestinal tracts of animals and anaerobic digesters, where it contributes to the breakdown of complex carbohydrates and production of short-chain fatty acids, such as butyrate. The fermentation process facilitated by Megasphaera sp. NM10 is critical for nutrient cycling in these ecosystems, particularly in the digestive systems of herbivorous animals, where it aids in the degradation of fibrous plant materials. This not only enhances the host's ability to extract energy from otherwise indigestible substances but also supports the overall health of the microbiome by maintaining a balanced ecosystem. Additionally, the activity of Megasphaera sp. NM10 can influence overall fermentation dynamics, impacting the production of gases such as methane—a crucial factor in ruminant digestive efficiency and greenhouse gas emissions. Understanding the specific metabolic pathways and interactions of Megasphaera sp. NM10 may provide insights into improving gut health in livestock and reducing the environmental impact of livestock farming. This highlights the microbe's potential role in sustainable agricultural practices, where enhancing the efficiency of digestion in herbivores could lead to lower methane emissions while maximizing feed conversion ratios." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera sp. NM10 No 1 Chemoheterotroph Multiple Nonsporulating 1273103 APHY00000000.1 Bac0005608 Ligilactobacillus salivarius cp400 "Ligilactobacillus salivarius cp400 is a Gram-positive, non-sporulating rod-shaped bacterium that is classified as a facultative anaerobe. This microbe is typically associated with host environments, suggesting a potential role in symbiotic relationships within its ecological niche. Its ability to thrive in both aerobic and anaerobic conditions may contribute to its adaptability in various host-associated habitats.↵↵The presence of L. salivarius cp400 in host-associated environments indicates its relevance in the microbial community dynamics, particularly in the gastrointestinal tract where it may participate in fermentation processes and contribute to the maintenance of gut health. This strain could potentially play a role in the modulation of the host's immune response and the overall balance of microbiota, although specific interactions and functionalities remain to be fully elucidated.↵↵Furthermore, the facultative anaerobic nature of Ligilactobacillus salivarius cp400 suggests that it can effectively utilize available oxygen while also thriving in oxygen-depleted conditions, which is a significant advantage in diverse microbial ecosystems. This flexibility may allow it to occupy various ecological niches, enhancing its survival and functional capacity in fluctuating environments. Overall, Ligilactobacillus salivarius cp400 exemplifies the complexity and adaptability of host-associated microbiota, highlighting its potential importance in health and disease contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1273133 CBVR000000000.1 Bac0005609 Campylobacter fetus subsp. venerealis cfvi03/293 "Campylobacter fetus subsp. venerealis cfvi03/293 is a Gram-negative bacterium characterized by its spirilla shape and unique arrangement, typically found as singles or in chains. This microbe is microaerophilic, indicating its requirement for reduced oxygen levels for optimal growth, which is reflective of its adaptation to host-associated environments. Campylobacter fetus subsp. venerealis is primarily associated with the reproductive tracts of certain animals, suggesting its ecological niche may be closely tied to host interactions during reproductive processes.↵↵The microbe's spiral morphology may play a role in its motility, allowing it to navigate the viscous environments of its host, enhancing its potential for colonization. The microaerophilic nature of Campylobacter fetus subsp. venerealis cfvi03/293 implies a specialized metabolic adaptation, enabling it to thrive in the low-oxygen conditions often found in the host's reproductive systems. This adaptation may impact its interactions with the host's immune response and the overall dynamics of microbial communities within these niches. Understanding these traits can provide valuable insights into the ecological role of Campylobacter fetus subsp. venerealis in animal health and reproductive success." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus Negative Spirilla Yes 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1273266 NZ_CP006999.2 Bac0005610 Streptococcus iniae IUSA1 "Streptococcus iniae IUSA1 is a nonsporulating, cocci-shaped bacterium that thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic respiration, allowing it to adapt to various oxygen conditions in its environment. As a chemoheterotroph, this microbe derives its energy from organic compounds, which enables it to inhabit a variety of ecological niches.↵↵The versatility of S. iniae IUSA1's habitat is notable, as it can be found in multiple locations, suggesting a capacity for survival in diverse environments. This adaptability may contribute to its persistence in aquatic ecosystems, where it is often associated with fish, indicating potential interactions with both host organisms and the surrounding microbiome.↵↵Given its facultative anaerobic nature, S. iniae IUSA1 may play a role in biogeochemical cycling, particularly in environments where oxygen levels fluctuate. Its ability to thrive under varying oxygen conditions could facilitate metabolic processes that contribute to nutrient recycling and energy flow within its habitat. Thus, Streptococcus iniae IUSA1 exemplifies the ecological complexity and adaptability of microbial life in response to environmental changes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus iniae Cocci No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1273539 AOCT00000000.2 Bac0005611 Pyrodictium delaneyi str. Su06 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrodictium Pyrodictium delaneyi 1273541 NZ_CP013011.1 Bac0005612 Paenibacillus pinisoli str. JCM 19203 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus pinisoli 1276110 QXQB00000000.1 Bac0005613 Spiroplasma chrysopicola DF-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma chrysopicola microaerophile 1276227 NC_021280.1 Bac0005614 Spiroplasma syrphidicola EA-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma syrphidicola microaerophile 1276229 NC_021284.1 Bac0005615 Spiroplasma apis B31 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma apis 1276258 NC_022998.1 Bac0005616 Vibrio bivalvicida str. 605 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio bivalvicida 1276888 LLEI00000000.2 Bac0005617 Paeniglutamicibacter gangotriensis Lz1y "Paeniglutamicibacter gangotriensis Lz1y is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 16.0°C. This organism is characterized by its non-spore-forming nature, distinguishing it from other genera within the same ecological niche that may utilize sporulation as a survival strategy. ↵↵The Gram-positive nature of P. gangotriensis indicates a thick peptidoglycan layer in its cell wall, which is typical for this group of bacteria and may confer certain advantages in specific environmental conditions. Its rod shape suggests a potential for rapid growth and adaptation to its surroundings, particularly in cooler habitats where it can optimally perform metabolic functions.↵↵Given its aerobic requirement, P. gangotriensis likely plays a role in the degradation of organic matter in oxygen-rich environments, possibly contributing to nutrient cycling in its habitat. The organism's optimal growth at a relatively low temperature may indicate a niche adaptation, allowing it to thrive in cooler climates or specific ecological zones, such as high-altitude or polar regions. This trait may also suggest potential applications in biotechnological processes that require microbial activity at lower temperatures, where many mesophilic organisms may not be effective. Further investigation into its metabolic pathways and ecological interactions could yield insights into its functional roles in microbial communities." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paeniglutamicibacter Paeniglutamicibacter gangotriensis Gram-positive rod non-motile aerobic 16 psychrotolerant non-spore-forming 1276920 AOCK00000000.1 Bac0005618 Staphylococcus petrasii "Staphylococcus petrasii is a Gram-positive, aerobic bacterium characterized by its spherical shape. As a member of the Staphylococcus genus, it exhibits the typical morphological features associated with this group, including a tendency to form clusters resembling grape-like structures. Notably, S. petrasii is non-spore-forming, which suggests that it relies on vegetative growth for survival and reproduction in its environmental niche.↵↵The aerobic nature of S. petrasii indicates that it requires oxygen for its metabolic processes, which may influence its habitat preferences and interactions with other microbial communities. The presence of oxygen as a requirement suggests that S. petrasii may thrive in environments where aerobic conditions prevail, such as on the surface of skin or in other oxygen-rich niches. ↵↵Further investigation into the specific metabolic pathways and physiological characteristics of S. petrasii could provide insights into its role in microbial ecosystems and its potential interactions with other microorganisms. Understanding these dynamics may illuminate how S. petrasii contributes to the overall microbial diversity and stability in its ecological context, particularly in environments where aerobic bacteria play a critical role in nutrient cycling and community structure." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus petrasii Gram-positive sphere non-motile aerobic non-spore-forming 1276936 UHDO00000000.1 Bac0005619 Myxococcus stipitatus DSM 14675 Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus 1278073 NC_020126.1 Bac0005620 Rhodococcus ruber BKS 20-38 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus ruber 1278076 AOEX00000000.1 Bac0005621 Keratinibaculum paraultunense str. DSM 26752 Bacillati Bacillota Tissierellia Tissierellales Tepidimicrobiaceae Keratinibaculum Keratinibaculum paraultunense anaerobic 1278232 SMAE00000000.1 Bac0005622 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. S87F.05.LMB.W.Kidney.N 1278758 SODX00000000.1 Bac0005623 Arthrobacter sp. 31Cvi3.1E Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. 31Cvi3.1E 1279032 FUZB00000000.1 Bac0005624 Shimia haliotis "Shimia haliotis is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth temperature of 29.0 °C. This microbe’s Gram-negative cell wall structure is indicative of its sensitivity to certain antibiotics and its ability to form a protective outer membrane, which may play a role in its environmental adaptability. The rod shape of S. haliotis suggests a possible motility mechanism, although specific motility traits are not provided.↵↵The optimal growth temperature of 29.0 °C indicates that S. haliotis is likely adapted to moderately warm environments, which may include specific ecological niches where such temperatures are prevalent. As an aerobic organism, it relies on oxygen for its metabolic processes, suggesting a potential role in nutrient cycling in environments rich in organic matter. ↵↵The characteristics of S. haliotis may allow it to thrive in specific marine or freshwater environments, potentially contributing to the decomposition of organic materials or engaging in symbiotic relationships with other marine organisms. Further investigation into the ecological roles and interactions of Shimia haliotis could provide deeper insights into its contribution within its habitat, particularly in relation to nutrient dynamics and microbial community structure. Understanding these relationships may help elucidate the broader ecological significance of this bacterium in its native environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia haliotis Gram-negative rod aerobic 29 mesophilic 1280847 FOSZ00000000.1 Bac0005625 Hyphomonas pacifica Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas pacifica 1280941 AWFA00000000.1 Bac0005626 Hyphomonas chukchiensis str. BH-BN04-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas chukchiensis 1280947 AWFG00000000.1 Bac0005627 Hyphomonas atlantica str. 22II1-22F38 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas atlantica corrig. 1280948 AWFH00000000.1 Bac0005628 Hyphomonas adhaerens MHS-3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas adhaerens 1280949 ARYH00000000.1 Bac0005629 Hyphomonas johnsonii MHS-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas johnsonii 1280950 ARYK00000000.1 Bac0005630 Hyphomonas oceanitis SCH89 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas oceanitis 1280953 ARYL00000000.1 Bac0005631 Escherichia coli UMEA 3718-1 "Escherichia coli UMEA 3718-1 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cellular arrangement primarily in pairs and singles, indicative of its potential adaptability within various ecological niches. Optimal growth occurs at 37.0°C, aligning with the typical body temperature of mammals, suggesting a specialization for life in warm-blooded hosts. ↵↵As a facultative anaerobe, E. coli UMEA 3718-1 possesses the metabolic versatility to thrive in both aerobic and anaerobic conditions, which may enhance its survival and proliferation in diverse microenvironments within its host. This adaptability is crucial for maintaining its presence in the gastrointestinal tract, where oxygen levels can vary significantly.↵↵The habitat of E. coli UMEA 3718-1, being host-associated, underscores its role in the microbial community of the host organism. While its specific interactions within the host are not detailed here, such bacteria typically contribute to nutrient absorption and can influence the overall health of the host by maintaining a balanced microbiota. Furthermore, understanding the traits of this strain may yield insights into the broader ecological roles of E. coli as a model organism in microbiological research, particularly in studies related to gut health and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1281269 AWED00000000.1 Bac0005632 Tepidibacillus fermentans str. DSM 23802 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Tepidibacillus Tepidibacillus fermentans anaerobic 1281767 SMAB00000000.1 Bac0005633 Asticcacaulis sp. AC460 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis sp. AC460 1282360 AWGD00000000.1 Bac0005634 Asticcacaulis sp. AC402 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis sp. AC402 1282361 AWGC00000000.1 Bac0005635 Asticcacaulis sp. AC466 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis sp. AC466 1282362 AWGE00000000.1 Bac0005636 Asticcacaulis sp. YBE204 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis sp. YBE204 1282363 AWGF00000000.1 Bac0005637 Flaviflexus salsibiostraticola str. KCTC 33148 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Flaviflexus Flaviflexus salsibiostraticola aerobic 1282737 NZ_CP034438.1 Bac0005638 Pseudomonas sp. URMO17WK12:I11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URMO17WK12:I11 1283291 NZ_LN865164.1 Bac0005639 Streptomyces afghaniensis 772 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces afghaniensis 29 mesophilic 1283301 AOPY00000000.1 Bac0005640 Azotobacter vinelandii CA6 "Azotobacter vinelandii CA6 is a Gram-negative, coccoid bacterium that typically forms chains, pairs, or exists as single cells. This organism is a lithotroph, utilizing inorganic compounds as its primary energy source, and is obligately aerobic, requiring oxygen for its metabolic processes. A. vinelandii CA6 has been isolated from diverse habitats, showcasing its adaptability to various environmental conditions.↵↵As a member of the Azotobacter genus, A. vinelandii CA6 is known for its nitrogen-fixing capabilities, which play a crucial role in the nitrogen cycle by converting atmospheric nitrogen into a biologically usable form. This trait is particularly valuable in agricultural ecosystems, where it can enhance soil fertility and support plant growth. The ability to thrive in multiple habitats suggests that A. vinelandii CA6 may contribute significantly to nutrient cycling across different ecological niches.↵↵The presence of this bacterium in various environments indicates its potential role in promoting soil health and enhancing agricultural productivity. Understanding the metabolic pathways and environmental adaptations of A. vinelandii CA6 may offer insights into sustainable agricultural practices and the broader implications of microbial activity in ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter vinelandii Negative Cocci Yes 1 2 Aerobe Lithotroph Mesophilic Multiple Free living Chains - Pairs - Singles 1283331 NC_021150.1 Bac0005641 Candidatus Scalindua japonica Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Scalinduaceae Candidatus Scalindua Candidatus Scalindua japonica 1284222 BAOS00000000.1 Bac0005642 Pseudomonas sp. FH4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FH4 1284393 AOHN00000000.1 Bac0005643 Cycloclasticus sp. symbiont of Bathymodiolus heckerae Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus sp. symbiont of Bathymodiolus heckerae 1284675 LWTL00000000.1 Bac0005644 Anaerococcus lactolyticus S7-1-13 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus lactolyticus 1284686 JRMW00000000.1 Bac0005645 Tissierellia bacterium S7-1-4 Bacillati Bacillota Tissierellia Tissierellia bacterium S7-1-4 1284708 JRMY00000000.1 Bac0005646 Magnetospirillum marisnigri str. SP-1 "Magnetospirillum marisnigri str. SP-1 is a microaerophilic, curved to spiral-shaped bacterium that thrives optimally at a temperature of 29.0°C. This organism is part of the Magnetospirillum genus, which is known for its unique ability to orient in magnetic fields due to the presence of magnetosomes. These intracellular structures, composed of magnetic iron minerals, enable the bacterium to navigate its aquatic environment effectively, likely aiding in locating optimal niches for growth and nutrient acquisition.↵↵As a microaerophile, M. marisnigri str. SP-1 requires low levels of oxygen for its metabolic processes, which shapes its preferred habitat in oxygen-stratified environments such as sediments in marine ecosystems. The specific temperature at which it grows best suggests a potential adaptation to warm, shallow waters, where it may play a role in biogeochemical cycling. Understanding the physiological and ecological roles of this bacterium can provide deeper insights into microbial magnetotaxis and its implications for sedimentary processes in marine environments, highlighting the intricate relationships between microbial life and physical environmental factors." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Magnetospirillaceae Paramagnetospirillum Paramagnetospirillum marisnigri curved/spiral motile microaerophile 29 mesophilic 1285242 LWQT00000000.1 Bac0005647 Corynebacterium casei LMG S-19264 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium casei 1285583 NZ_CP004352.1 Bac0005648 Acinetobacter nosocomialis P020 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter nosocomialis 1285584 APCE00000000.1 Bac0005649 Lysinibacillus sphaericus OT4b.31 "Lysinibacillus sphaericus OT4b.31 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as an aerobic organism. This strain thrives in specialized habitats, indicating a potential adaptation to specific environmental conditions that may influence its growth and survival. ↵↵The ability to form spores is a significant trait, as it allows L. sphaericus OT4b.31 to endure adverse conditions, including nutrient depletion and environmental stressors. The aerobic nature of this bacterium suggests it relies on oxygen to sustain its metabolic processes, which may limit its distribution to environments where oxygen is readily available.↵↵Understanding the ecological niches occupied by L. sphaericus OT4b.31 can provide insights into its role in microbial communities. Given its specialized habitat requirements and sporulating ability, this bacterium may contribute to nutrient cycling or serve as a biological control agent in its native environment. Further investigation into its interactions with other microorganisms and the specific conditions that define its habitat may reveal important aspects of its ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sphaericus Positive Rod Yes 1 1 Aerobe Mesophilic Specialized Free living Sporulating 1285586 AQPX00000000.1 Bac0005650 Methylophaga lonarensis MPL "Methylophaga lonarensis MPL is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative growth to survive and proliferate in its environment.↵↵The Gram-negative nature of Methylophaga lonarensis MPL indicates a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature may contribute to its survival in various ecological niches by providing resistance to certain environmental stresses.↵↵The obligate aerobic requirement of this microbe suggests that it plays a role in environments where oxygen is present, likely engaging in processes such as the degradation of organic compounds. Its optimal growth temperature of 29.0°C positions it well within the range of mesophilic organisms, which typically inhabit moderate thermal environments. ↵↵Methylophaga lonarensis MPL’s specific adaptations to aerobic conditions and its non-spore-forming nature might indicate a reliance on consistent environmental conditions, potentially limiting its distribution to stable habitats. This characteristic underscores the importance of aerobic microorganisms in biogeochemical cycles, particularly in the cycling of carbon and other nutrients in environments rich in organic matter. Further investigations into its metabolic pathways could reveal insights into its ecological roles and potential applications in bioremediation or biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga lonarensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 1286106 APHR00000000.1 Bac0005651 Pseudomonas sp. LAMO17WK12:I10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LAMO17WK12:I10 1286371 OBDX00000000.1 Bac0005652 Bacillus thuringiensis serovar thuringiensis str. IS5056 "Bacillus thuringiensis serovar thuringiensis str. IS5056 is a Gram-positive, rod-shaped bacterium that exhibits the capability to sporulate, indicating its ability to form resilient spores under environmental stress. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions, which may enhance its adaptability to various host-associated environments.↵↵As a member of the Bacillus genus, this strain is known for its potential interactions with specific hosts, though the precise nature of these associations is not detailed in the provided traits. The ability to sporulate suggests an ecological advantage, enabling the bacterium to survive unfavorable conditions and possibly contributing to its persistence within host environments.↵↵Bacillus thuringiensis strains are widely recognized for their role in biocontrol and agricultural applications, primarily due to their production of insecticidal proteins. While the specific biocontrol potential of strain IS5056 has not been detailed here, its characteristics align with those that are typically observed in strains utilized for pest management.↵↵In summary, Bacillus thuringiensis serovar thuringiensis str. IS5056 represents a microbe with significant ecological versatility, potentially playing a role in the dynamics of host-associated microbial communities, where its sporulation and facultative anaerobic capabilities may facilitate its survival and interaction with various environmental factors." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1286404 NC_020385.1 Bac0005653 Sphaerotilus natans subsp. natans DSM 6575 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Sphaerotilus Sphaerotilus natans 1286631 AZRA00000000.1 Bac0005654 Zhouia amylolytica AD3 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zhouia Zhouia amylolytica 1286632 AYXY00000000.1 Bac0005655 Desulfotignum phosphitoxidans DSM 13687 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfotignum Desulfotignum phosphitoxidans anaerobic 1286635 APJX00000000.1 Bac0005656 Brachyspira hampsonii "Brachyspira hampsonii is a gram-negative, spiral-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can inhabit various body sites in multiple species, including the intestinal tracts of pigs, birds, and humans. As an obligate anaerobe, it requires the absence of oxygen to survive and grow. The gram-negative characteristic indicates that the microbe's cell wall contains a thin peptidoglycan layer, making it more resistant to certain antibiotics. Its spiral shape allows it to move and colonize efficiently in its environment. Being a mesophile, Brachyspira hampsonii grows best in temperatures between 20-40°C, which is typical for many intestinal microbes. As a chemoheterotroph, it relies on organic compounds for energy and carbon sources, breaking down complex molecules to sustain its growth. This microbe can be found in various body sites, including the gastrointestinal tracts of different hosts, where it can cause disease or coexist as a commensal. The obligate anaerobic nature of Brachyspira hampsonii makes it well-suited to the low-oxygen environments found in the intestines. Brachyspira hampsonii has been associated with colonic spasms and diarrhea in pigs, and its ability to infect multiple species has raised concerns about its potential impact on animal and human health. The microbe's unique characteristics have led researchers to investigate its role in the development of intestinal diseases, and studies have shown that it can outcompete other microbes in the gut, potentially leading to an imbalance in the intestinal microbiota." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hampsonii Negative Spirilla Yes 1 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1287055 MDCO00000000.1 Bac0005657 Mesorhizobium sp. L103C105A0 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L103C105A0 1287074 AYXF00000000.1 Bac0005658 Mesorhizobium sp. L103C119B0 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L103C119B0 1287085 AYXE00000000.1 Bac0005659 Mesorhizobium sp. L2C054A000 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L2C054A000 1287100 AYXA00000000.1 Bac0005660 Mesorhizobium sp. L2C066B000 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L2C066B000 1287105 AYWZ00000000.1 Bac0005661 Mesorhizobium sp. L2C084A000 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L2C084A000 1287116 AYWX00000000.1 Bac0005662 Mesorhizobium sp. L2C085B000 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L2C085B000 1287117 AYWW00000000.1 Bac0005663 Mesorhizobium sp. LNHC209A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNHC209A00 1287226 AYWT00000000.1 Bac0005664 Mesorhizobium sp. LNHC232B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNHC232B00 1287243 AYWP00000000.1 Bac0005665 Mesorhizobium sp. LNJC372A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNJC372A00 1287256 AYWN00000000.1 Bac0005666 Mesorhizobium sp. LNJC391B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNJC391B00 1287273 AYWI00000000.1 Bac0005667 Mesorhizobium sp. LNJC394B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNJC394B00 1287274 AYWH00000000.1 Bac0005668 Mesorhizobium sp. LNJC405B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNJC405B00 1287281 AYWC00000000.1 Bac0005669 Mesorhizobium sp. LSHC412B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSHC412B00 1287285 AYWB00000000.1 Bac0005670 Mesorhizobium sp. LSHC414A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSHC414A00 1287287 AYWA00000000.1 Bac0005671 Mesorhizobium sp. LSHC422A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSHC422A00 1287294 AYVX00000000.1 Bac0005672 Mesorhizobium sp. LSHC426A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSHC426A00 1287298 AYVV00000000.1 Bac0005673 Mesorhizobium sp. LSJC264A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSJC264A00 1287321 AYVQ00000000.1 Bac0005674 Mesorhizobium sp. LSJC280B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSJC280B00 1287336 AYVL00000000.1 Bac0005675 Roseovarius azorensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius azorensis 1287727 FOAG00000000.1 Bac0005676 Achromobacter aegrifaciens Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter aegrifaciens aerobic 1287736 CYTK00000000.1 Bac0005677 Yersinia pekkanenii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pekkanenii aerobic 1288385 CQAZ00000000.1 Bac0005678 Pseudomonas guariconensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas guariconensis 1288410 FMYX00000000.1 Bac0005679 Vibrio parahaemolyticus 901128 "Vibrio parahaemolyticus 901128 is a Gram-negative, rod-shaped bacterium characterized by its arrangement in singles. This strain thrives in aquatic environments, where it plays a role as a heterotrophic organism, utilizing organic compounds as its energy source. V. parahaemolyticus 901128 exhibits a facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels within its habitat. The optimal temperature for growth is approximately 20.0 °C, indicating a preference for cooler aquatic conditions. ↵↵The ecological significance of V. parahaemolyticus 901128 may lie in its ability to contribute to the microbial diversity of aquatic ecosystems, potentially influencing nutrient cycling and energy flow. Its heterotrophic lifestyle suggests that it may interact with a variety of organic substrates, which could be important for the degradation of organic matter in aquatic habitats. This adaptability to both aerobic and anaerobic conditions further emphasizes its ecological versatility and potential role in biogeochemical processes within freshwater or marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 1288792 AOPG00000000.1 Bac0005680 Magnetospira sp. QH-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Magnetospira Magnetospira sp. QH-2 1288970 NZ_FO538765.1 Bac0005681 [Clostridium] ultunense Esp Bacillati Bacillota Tissierellia Tissierellales Tepidimicrobiaceae Schnuerera Schnuerera ultunensis 1288971 CARA00000000.1 Bac0005682 Brachyspira hampsonii 30446 "Brachyspira hampsonii 30446 is a Gram-negative, nonsporulating bacterium characterized by its spirilla shape, which suggests a helical or spiral form. This microbe thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions typically found within the intestines of its animal hosts. As a chemoheterotroph, B. hampsonii 30446 derives its energy from organic compounds, which is indicative of its role within the complex ecosystem of animal intestinal microflora. ↵↵The presence of B. hampsonii 30446 in the gut suggests a potential involvement in the fermentation of substrates, contributing to the overall metabolic processes within the intestinal environment. Its specific habitat within the intestinal microflora highlights the importance of such bacteria in maintaining gut health and influencing digestive dynamics. The adaptation of B. hampsonii 30446 to the intestinal niche may also reflect a symbiotic relationship with its host, although the precise interactions remain to be elucidated. Understanding the traits and ecological roles of B. hampsonii 30446 can provide insights into the broader implications of gut microbiota composition on animal health and metabolism." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hampsonii Negative Spirilla Yes 1 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1289135 ALNZ00000000.1 Bac0005683 Clavibacter seminis "Clavibacter seminis is a Gram-positive, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe thrives in a variety of habitats, reflecting its adaptability to different environmental conditions. C. seminis is classified as an aerobic organism, indicating that it requires oxygen for its metabolic processes. The optimal growth temperature for this bacterium is approximately 25.0°C, suggesting that it may be well-suited to moderate climatic conditions.↵↵While specific ecological roles or associations of C. seminis are not detailed in the available data, its presence in diverse habitats may imply interactions with various plant or soil microbiomes. The ability of this organism to form pairs could suggest a degree of cooperative behavior or communication, which is often observed among bacteria in similar genera. Further investigation into its ecological niche could reveal insights into its potential roles in nutrient cycling or interactions with other microorganisms." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 1291006 AZQZ00000000.1 Bac0005684 Lacticaseibacillus nasuensis JCM 17158 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus nasuensis 1291734 AZDJ00000000.1 Bac0005685 Paucilactobacillus hokkaidonensis JCM 18461 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus hokkaidonensis 1291742 NZ_AP014680.1 Bac0005686 Lactococcus fujiensis JCM 16395 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus fujiensis microaerophile 1291764 JXJU00000000.1 Bac0005687 Dietzia sp. UCD-THP Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia sp. UCD-THP 1292020 AOSR00000000.1 Bac0005688 Kocuria sp. UCD-OTCP Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. UCD-OTCP 1292021 AOSQ00000000.1 Bac0005689 Leucobacter sp. UCD-THU Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter sp. UCD-THU 1292023 APJM00000000.1 Bac0005690 Mycoplasma putrefaciens Mput9231 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma putrefaciens 1292033 NC_021083.1 Bac0005691 Caulobacter vibrioides OR37 "Caulobacter vibrioides OR37 is a Gram-negative, rod-shaped bacterium that typically exists as single cells, exhibiting a distinct morphology that facilitates its survival in aquatic environments. This species thrives optimally at a temperature of 35.0°C, indicating a preference for warm, freshwater habitats. As an aerobe, C. vibrioides OR37 requires oxygen for its metabolic processes, which aligns with its aquatic lifestyle, where oxygen availability can vary based on environmental conditions.↵↵The unicellular arrangement of C. vibrioides OR37 allows it to efficiently exploit available nutrients and adapt to changing surroundings within its habitat. Its rod shape may also confer advantages in mobility and nutrient uptake in aquatic environments. ↵↵Understanding the characteristics and behaviors of Caulobacter vibrioides OR37 can provide insights into microbial dynamics within freshwater ecosystems, particularly regarding nutrient cycling and interactions with other microbial species. The ability of this bacterium to thrive in specific temperature ranges and its aerobic nature underscore its role in the aquatic microbiome, potentially influencing the ecological balance and health of its environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides Negative Rod Yes 1 2 Aerobe 35 Mesophilic Aquatic Free living Singles 1292034 APMP00000000.1 Bac0005692 Helicobacter pylori CG-IMSS-2012 "Helicobacter pylori CG-IMSS-2012 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This microorganism thrives optimally at a temperature of 37.0°C, aligning with the typical internal body temperature of its host. H. pylori is primarily host-associated, indicating a close relationship with the gastric environment of its hosts, where it plays a significant role in the complex ecology of the gastrointestinal tract.↵↵As a microaerophilic organism, H. pylori requires reduced levels of oxygen for its metabolic processes, which is consistent with the low-oxygen conditions often found in the gastric mucosa. The unique morphological and physiological traits of this bacterium enable it to colonize the harsh acidic environment of the stomach, where it can interact with the host's immune system and other microbial communities. The solitary arrangement of H. pylori cells suggests a strategy that may enhance competitive survival within the densely populated microbial ecosystem of the gut.↵↵Understanding the specific adaptations of Helicobacter pylori CG-IMSS-2012 to its microenvironment can provide insights into its ecological niche and potential roles in influencing gastric health and disease dynamics. This highlights the importance of studying host-associated microbes in their natural habitats to better comprehend their biological functions and interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1292040 AWUL00000000.1 Bac0005693 Thermococcus celer Vu 13 = JCM 8558 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus celer 1293037 NZ_CP014854.1 Bac0005694 Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium saccharolyticum No 1 Anaerobic Chemoheterotroph Mesophilic Nonsporulating 1293054 CAUI00000000.1 Bac0005695 Devosia epidermidihirudinis str. E84 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia epidermidihirudinis 1293439 LANJ00000000.1 Bac0005696 Borrelia crocidurae DOU Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia crocidurae 1293575 NZ_CP004267.1 Bac0005697 Acidiplasma sp. MBA-1 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Acidiplasma Acidiplasma sp. MBA-1 1293648 JYHS00000000.1 Bac0005698 Thalassospira alkalitolerans str. JCM 18968 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira alkalitolerans 1293890 JFKB00000000.1 Bac0005699 Bartonella bacilliformis Ver097 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella bacilliformis 1293911 ASIV00000000.1 Bac0005700 Brucella ovis IntaBari-2002-82-58 "Brucella ovis IntaBari-2002-82-58 is a Gram-negative, rod-shaped bacterium that typically forms chains, pairs, or exists as single cells. This strain is a facultative aerobe, demonstrating versatility in its oxygen requirements, which allows it to thrive in various host-associated environments. The optimal growth temperature for B. ovis IntaBari-2002-82-58 is 37.0°C, a temperature that aligns with the physiological conditions found within many mammalian hosts. ↵↵As a member of the genus Brucella, this bacterium is likely adapted to survive and proliferate in the complex microenvironments of its host, suggesting a high level of specialization in its interactions with host tissues. The host-associated habitat indicates that B. ovis IntaBari-2002-82-58 may play a role in the host's microbiome or contribute to specific physiological processes. ↵↵Understanding the growth characteristics and environmental adaptations of B. ovis IntaBari-2002-82-58 could provide insights into its ecological role within its host and the potential impact it may have on host health and disease dynamics. This strain exemplifies the intricate relationships between microbial life and host organisms, highlighting the importance of studying such microbes in their natural habitats to better understand their biology and potential implications for host interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella ovis Negative Rod No 1 2 Facultative aerobe 37 Mesophilic HostAssociated Free living Chains - Pairs - Singles 1293916 AQIK00000000.1 Bac0005701 Acetivibrio straminisolvens JCM 21531 Bacillati Bacillota Clostridia Acetivibrionales Acetivibrionaceae Acetivibrio Acetivibrio straminisolvens 1294263 BAVR00000000.1 Bac0005702 Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 "Lysinibacillus boronitolerans JCM 21713 (= 10a = NBRC 103108) is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities, which contribute to its resilience in various environmental conditions. This species thrives optimally at a temperature of 37.0 °C, indicating a preference for mesophilic environments, which may be relevant for its survival and growth in habitats that mimic mammalian body temperatures.↵↵The ability to form spores is a significant trait that enhances its survival strategy, allowing it to withstand adverse conditions such as desiccation, nutrient deprivation, and extreme temperatures. This trait may also facilitate its dispersal in the environment, as spores can remain dormant for extended periods until favorable growth conditions are encountered.↵↵While specific ecological roles or interactions of L. boronitolerans remain undefined, its adaptation to tolerate boron suggests a potential niche in environments where boron levels might be elevated, such as in certain agricultural soils or areas affected by mineral deposits. Further exploration of its metabolic capabilities and interactions with other microorganisms could provide insights into its ecological significance and potential applications in biotechnology or bioremediation strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus boronitolerans Gram-positive rod 37 mesophilic spore-forming 1294264 JPVR00000000.1 Bac0005703 Mesobacillus boroniphilus JCM 21738 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Mesobacillus Mesobacillus boroniphilus 1294265 BAUW00000000.1 Bac0005704 Melittangium boletus DSM 14713 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Melittangium Melittangium boletus 1294270 NZ_CP022163.1 Bac0005705 Roseicyclus elongatus DSM 19469 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseicyclus Roseicyclus elongatus 1294273 NZ_CP004372.1 Bac0005706 Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 "Here is a detailed description of 'Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1': This microbe, classified as 'Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1', has a temperature preference category of mesophilic, meaning it thrives in moderate temperatures between 20-45°C. Its metabolism is strictly anaerobic, relying on chemosynthesis as its energy source, where it generates ATP through the reduction of oxidized-cofactor derivatives. Specifically, it is a methanogen, producing methane gas as byproduct of its metabolism. The microbe is a gram-negative bacterium, characterized by its helical shape, often referred to as a 'screw-like' morphology. 'Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1' is typically found in the gastrointestinal tracts of mammals, with a particular affinity for the large intestine. Its anaerobic metabolism allows it to thrive in the low-oxygen environments of the gut, where it coexists with other microorganisms. It is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, and requires a strictly anaerobic environment to survive. In terms of energy production, 'Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1' uses a unique mechanism of energy conversion, where it converts carbon dioxide into methane, releasing a vast amount of energy in the process. This process is crucial for the survival of the microbe, allowing it to maintain its metabolic activities and sustain its growth. Despite its anaerobic nature, 'Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1' has been found to play a vital role in the gut ecosystem, influencing the composition of the gut microbiota and contributing to the breakdown of complex organic matter." Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Methanomassiliicoccus Candidatus Methanomassiliicoccus intestinalis Cocci No 1 Animal intestinal microflora Nonsporulating 1295009 NC_021353.1 Bac0005707 Pseudomonas veronii 1YdBTEX2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas veronii 1295141 LT599585.1 Bac0005708 Pseudaminobacter soli Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Pseudaminobacter Pseudaminobacter soli (ex Li et al. 2025) 1295366 PXYL00000000.1 Bac0005709 Photobacterium gaetbulicola Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium gaetbulicola 1295392 JWLZ00000000.1 Bac0005710 Enterococcus faecium CRL1879 "Enterococcus faecium CRL1879 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism. As a member of the Enterococcus genus, E. faecium CRL1879 demonstrates resilience in various environmental conditions, allowing it to thrive in both the presence and absence of oxygen. This adaptability is a characteristic feature of facultative anaerobes, enabling them to utilize aerobic respiration when oxygen is available and switch to fermentation or anaerobic respiration in its absence.↵↵Enterococcus faecium is commonly found in the gastrointestinal tracts of humans and animals, where it plays a role in the complex microbial community. While many strains of E. faecium are recognized for their contribution to gut health, the specific ecological role of strain CRL1879 may warrant further investigation to elucidate its potential benefits or interactions within the microbiome. The traits of E. faecium, including its Gram-positive nature and coccal shape, are indicative of its evolutionary adaptations that facilitate survival in diverse environments. ↵↵Research into strain CRL1879 may reveal insights into its metabolic capabilities and potential applications in biotechnology or probiotic development. As such, understanding the physiological characteristics of Enterococcus faecium CRL1879 could provide valuable information regarding its utility in promoting gut health and its interactions within microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1295527 AOUK00000000.1 Bac0005711 Mucilaginibacter yixingensis str. DSM 26809 "Mucilaginibacter yixingensis str. DSM 26809 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and inability to form spores. This species thrives optimally at a temperature of 37.0°C, suggesting a preference for warm, potentially host-associated environments. ↵↵As a member of the Mucilaginibacter genus, it is likely to play a role in the degradation of complex organic materials, contributing to nutrient cycling within its habitat. The Gram-negative cell wall structure of M. yixingensis may confer advantages in specific ecological niches, such as resistance to certain antimicrobial agents and the ability to interact with other microorganisms in its environment.↵↵Further exploration of this microbe could provide insights into its metabolic pathways and ecological interactions, particularly in the context of its potential applications in bioremediation or biotechnology. The specific adaptations of Mucilaginibacter yixingensis to aerobic conditions at optimal temperatures could reveal important aspects of microbial resilience and functionality in diverse ecosystems." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter yixingensis Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 1295612 QAOQ00000000.1 Bac0005712 Parageobacillus genomosp. 1 str. NUB3621 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus genomosp. 1 thermophilic 1295642 AOTZ00000000.1 Bac0005713 Lactococcus cremoris subsp. cremoris KW2 "Lactococcus cremoris subsp. cremoris KW2 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism. This microbe thrives at an optimal temperature of 40.0°C, suggesting a capacity for growth in environments that may experience elevated temperatures. Its habitat is diverse, indicating its potential adaptability to various ecological niches.↵↵As a member of the Lactococcus genus, L. cremoris subsp. cremoris KW2 is likely involved in fermentation processes, which are crucial for the production of dairy products and other fermented foods. The facultative anaerobic nature of this strain allows it to survive both in the presence and absence of oxygen, enhancing its versatility in different environments. ↵↵The ability of L. cremoris subsp. cremoris KW2 to grow optimally at elevated temperatures could provide insights into its role in food fermentation processes, particularly in situations where temperature control may fluctuate. This characteristic may also reflect its potential utility in industrial applications, where thermophilic conditions prevail. Overall, L. cremoris subsp. cremoris KW2 represents a valuable organism for further study in both microbiological and biotechnological contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1295826 NC_022369.1 Bac0005714 Enterobacter hormaechei subsp. xiangfangensis "Enterobacter hormaechei subsp. xiangfangensis is a Gram-negative bacterium classified within the Enterobacter genus, characterized by its facultative anaerobic metabolism. This microbe is primarily associated with host environments, suggesting its role in symbiotic or potentially opportunistic interactions within various hosts. Its facultative anaerobic nature indicates that E. hormaechei subsp. xiangfangensis can thrive in both aerobic and anaerobic conditions, allowing it to adapt to diverse physiological environments within host organisms.↵↵While specific pathogenicity traits for this subspecies are not provided, the association of Enterobacter species with human and animal hosts often raises considerations regarding their potential implications in health and disease contexts. The ability to survive in varied oxygen levels may offer this subspecies a competitive advantage in host-associated niches, where oxygen availability can fluctuate.↵↵Further exploration of the ecological roles and interactions of Enterobacter hormaechei subsp. xiangfangensis within its host environments may reveal insights into its contributions to microbial communities. Understanding these dynamics is crucial for elucidating the broader implications of this subspecies in microbial ecology, particularly in relation to health and disease mechanisms in host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 1296536 PTHX00000000.2 Bac0005715 Mesorhizobium sp. STM 4661 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. STM 4661 1297570 CAAF000000000.1 Bac0005716 Anoxybacillus flavithermus AK1 "Anoxybacillus flavithermus AK1 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrives optimally at a temperature of 60.0°C. As a facultative aerobe, this microbe can grow in both the presence and absence of oxygen, which suggests a versatile metabolic capability that may facilitate its survival in specialized habitats where environmental conditions can fluctuate.↵↵The ability to sporulate is particularly significant, as it allows A. flavithermus AK1 to endure extreme conditions that would otherwise be detrimental to non-sporulating organisms. This trait may confer an advantage in its specialized habitat, potentially allowing it to remain viable during periods of nutrient scarcity or extreme temperature variations.↵↵Moreover, the preference for elevated temperatures indicates that A. flavithermus AK1 is likely adapted to thermophilic environments, which could include geothermal features or thermally enriched environments, where its metabolic processes may play a role in nutrient cycling. Understanding the ecological role of A. flavithermus AK1 could provide insights into microbial communities in extreme environments and their contributions to biogeochemical processes." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus flavithermus Positive Rod Yes 1 1 Facultative aerobe 60 Thermophilic Specialized Free living Sporulating 1297581 APCD00000000.1 Bac0005717 Intestinimonas butyriciproducens str. af211 Bacillati Bacillota Clostridia Eubacteriales Intestinimonas Intestinimonas butyriciproducens No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1297617 NZ_CP011307.1 Bac0005718 Pseudomyxococcus hansupus Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pseudomyxococcus Pseudomyxococcus hansupus 1297742 NZ_CP012109.1 Bac0005719 Bacteroides luti Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides luti anaerobic 1297750 FQTV00000000.1 Bac0005720 Veillonella denticariosi JCM 15641 "Veillonella denticariosi JCM 15641 is a Gram-negative, spherical-shaped bacterium that is non-spore-forming and exhibits strict anaerobic growth. This organism is part of the Veillonella genus, which is known for its role in the human microbiome, particularly within the oral cavity and gastrointestinal tract. ↵↵The anaerobic nature of V. denticariosi suggests that it thrives in environments devoid of oxygen, which is consistent with its isolation from dental plaque and other anaerobic niches in the body. As a member of the normal flora, it may participate in the fermentation processes involving lactate and other metabolites, contributing to the complex interplay of microbial communities in its habitats. ↵↵Notably, the presence of V. denticariosi in the oral microbiome may offer insights into its potential involvement in dental health and disease, as well as its interactions with other microbial species. Its unique adaptation to anaerobic conditions positions it as a significant player in maintaining the balance of microbial populations in anoxic environments, potentially influencing host health and disease dynamics. This highlights the need for further investigation into its ecological role and functional contributions within the microbiome." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella denticariosi Gram-negative sphere non-motile anaerobic non-spore-forming 1298594 PPDB00000000.1 Bac0005721 Vibrio sp. JCM 18904 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. JCM 18904 1298599 BAYR00000000.1 Bac0005722 Vibrio sp. JCM 18905 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. JCM 18905 1298600 BAYS00000000.1 Bac0005723 Psychrobacter sp. JCM 18903 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. JCM 18903 1298610 BAWJ00000000.1 Bac0005724 Thermosulfidibacter takaii ABI70S6 "Thermosulfidibacter takaii ABI70S6 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. As a non-spore-forming organism, T. takaii is adapted to its thermal environment and likely engages in metabolic processes that exploit the unique chemical gradients present in high-temperature anaerobic habitats. ↵↵The absence of spores may suggest a reliance on specific environmental conditions for survival and reproduction, indicating a potential sensitivity to changes in habitat stability. Given its preference for elevated temperatures and anaerobic conditions, T. takaii may be associated with geothermal environments, such as hydrothermal vents or hot springs, where it could play a role in biogeochemical cycles involving sulfur compounds.↵↵This organism may contribute to the degradation of organic matter and the cycling of sulfur in its habitat, thus offering insights into the microbial dynamics of extreme environments. The metabolic capabilities of T. takaii could have implications for understanding microbial life in similar extreme conditions on Earth and potentially other celestial bodies with analogous environments." Pseudomonadati Thermosulfidibacterota Thermosulfidibacteria Thermosulfidibacterales Thermosulfidibacteraceae Thermosulfidibacter Thermosulfidibacter takaii Gram-negative rod anaerobic 45 thermophilic non-spore-forming 1298851 NZ_AP013035.1 Bac0005725 Idiomarinaceae bacterium HL-53 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarinaceae bacterium HL-53 1298881 LIHO00000000.1 Bac0005726 Mycobacterium kansasii 824 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kansasii 1299328 JANY00000000.1 Bac0005727 Mycobacterium intracellulare 1956 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 1299331 JAOG00000000.1 Bac0005728 Mycobacterium ulcerans str. Harvey "Mycobacterium ulcerans str. Harvey is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a chemoorganotroph, utilizing organic compounds as its energy source. It is an aerobic organism, requiring oxygen for its metabolic processes, and has an optimal growth temperature of 32.0°C, which aligns with environmental conditions found in specific host-associated habitats.↵↵The ecological niche of M. ulcerans str. Harvey is particularly interesting, as it highlights the microbe's adaptation to specific environments that may foster its growth and survival. Its host-associated habitat suggests a potential reliance on certain biological interactions, which could influence its ecological dynamics and evolutionary adaptations. Understanding the environmental conditions and interactions that support the growth of M. ulcerans str. Harvey may provide insights into its broader ecological role and its relationship with host organisms in its native habitat." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans Positive Rod No 1 1 Aerobe 32 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1299332 JAOL00000000.1 Bac0005729 Mycobacterium xenopi 3993 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium xenopi 1299333 JAOC00000000.1 Bac0005730 Enterococcus mundtii QU 25 str. QU25 "Enterococcus mundtii QU 25 str. QU25 is a nonsporulating, cocci-shaped bacterium classified within the Enterococcus genus. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments, which broadens its potential ecological niches. As a chemoheterotroph, E. mundtii QU 25 str. QU25 relies on organic compounds for energy and carbon, further underscoring its adaptability to various habitats.↵↵The optimal growth temperature for this strain is 37.0°C, suggesting a preference for warm environments that may be similar to those found in the human body or other warm-blooded hosts. The ability to grow at this temperature may reflect its potential roles in food fermentation processes or its presence in diverse ecological settings, such as soil, water, and the gastrointestinal tracts of animals.↵↵While the specific interactions of E. mundtii QU 25 str. QU25 within its habitat remain to be elucidated, the traits observed indicate a versatile organism capable of contributing to nutrient cycling and possibly influencing microbial community dynamics in its environments. Its facultative anaerobic nature, combined with its metabolic capabilities, suggests that it may play a significant role in the breakdown of organic matter in both aerobic and anaerobic conditions. This adaptability may also facilitate its use in biotechnological applications, such as in the production of fermented foods or probiotics." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus mundtii Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1300150 NC_022880.1 Bac0005731 Streptomyces zhaozhouensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces zhaozhouensis 1300267 OCNE00000000.1 Bac0005732 Lysobacter dokdonensis DS-58 "Lysobacter dokdonensis DS-58 is a Gram-negative, rod-shaped bacterium characterized by its aerobic respiration and non-spore-forming nature. This microbe exhibits optimal growth at a temperature of 29.0 °C, suggesting a mesophilic lifestyle that may be suited to a variety of environments. The Gram-negative cell wall structure typically indicates a complex outer membrane, which may play a role in its interactions with surrounding microbial communities and potential substrates.↵↵As a member of the Lysobacter genus, L. dokdonensis DS-58 may contribute to the degradation of organic matter, although specific metabolic pathways and substrates utilized by this strain require further investigation. Its aerobic nature implies that it relies on oxygen for growth, which may influence its ecological niche within environments with adequate oxygen availability.↵↵The unique combination of traits exhibited by Lysobacter dokdonensis DS-58 positions it as an organism potentially involved in nutrient cycling processes, contributing to the breakdown of organic compounds in aerobic environments. Understanding the ecological roles and metabolic capabilities of this bacterium could provide insights into its applications in bioremediation or soil health maintenance, particularly in ecosystems where organic matter turnover is critical." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Noviluteimonas Noviluteimonas dokdonensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1300345 JRKJ00000000.1 Bac0005733 Nocardioides dokdonensis FR1436 "Nocardioides dokdonensis FR1436 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microorganism thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. Isolated from sand sediment, N. dokdonensis FR1436 is well adapted to its habitat, suggesting a potential role in the biogeochemical processes occurring in such environments. ↵↵The aerobic requirement of this bacterium may imply involvement in the degradation of organic matter within its ecosystem, contributing to nutrient cycling and soil health. Further studies on N. dokdonensis FR1436 could elucidate its specific metabolic pathways and interactions with other microorganisms in sandy sediment habitats, potentially revealing its ecological significance in maintaining microbial diversity and functionality in these environments." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides dokdonensis Gram-positive rod non-motile aerobic 25 mesophilic sand sediment non-spore-forming 1300347 NZ_CP015079.1 Bac0005734 Anaeromyxobacter sp. PSR-1 Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. PSR-1 1300915 BAZG00000000.1 Bac0005735 Bacillus sp. GeD10 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. GeD10 1301086 CAVI000000000.1 Bac0005736 Sphingobium indicum BiD32 "Sphingobium indicum BiD32 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and optimal growth at 28.0°C. This microbe is predominantly found in terrestrial habitats, indicating its adaptation to land-based environments. The Gram-negative nature of S. indicum BiD32 suggests a complex cell wall structure, which may contribute to its resilience in various terrestrial ecosystems.↵↵The aerobic requirement of this organism implies that it relies on oxygen for its metabolic processes, aligning with its habitat preferences where oxygen availability is typically sufficient. This trait may enable S. indicum BiD32 to participate in biogeochemical cycles within its environment, potentially influencing nutrient dynamics in soil ecosystems.↵↵Given its specific growth conditions and habitat, Sphingobium indicum BiD32 may play a role in the biodegradation of organic compounds in terrestrial environments, particularly under aerobic conditions. Understanding its metabolic capabilities could provide insights into its ecological functions and potential applications in bioremediation efforts, particularly in the degradation of pollutants in soil." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium indicum Negative Rod No 1 2 Aerobic 28 Mesophilic Terrestrial Free living 1301087 CAVK000000000.1 Bac0005737 Cutibacterium acnes JCM 18920 "Cutibacterium acnes JCM 18920 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic conditions and is typically associated with host environments. This microbe has an optimal growth temperature of 37.0°C, which aligns with the physiological conditions found in mammalian hosts, suggesting its adaptation to life on human skin and within hair follicles.↵↵C. acnes is a member of the skin microbiota, where it plays a critical role in maintaining the balance of microbial communities. Although often studied in the context of skin health, its exact contributions to host homeostasis remain an area of active research. The anaerobic nature of this bacterium indicates its reliance on environments devoid of oxygen, which is characteristic of deeper skin layers and hair follicles, where it can thrive without competition from aerobic organisms.↵↵Furthermore, the ability of C. acnes to survive and proliferate in such niches may be linked to its metabolic pathways, which are adapted to utilize skin-derived nutrients. This unique ecological position not only highlights its role in skin microbiome dynamics but also emphasizes the importance of maintaining microbial diversity for skin health. Understanding the specific functions and interactions of C. acnes within its habitat could provide insights into potential therapeutic approaches for skin-related conditions, emphasizing the delicate interplay between host and microbial communities." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1302244 BAVP00000000.1 Bac0005738 Rhodococcus sp. P1Y Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. P1Y 1302308 NZ_CP032762.1 Bac0005739 Tetragenococcus muriaticus PMC-11-5 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus muriaticus 1302649 JPVU00000000.1 Bac0005740 Planococcus versutus str. L10.15 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus versutus 1302659 NZ_CP016541.2 Bac0005741 Mucilaginibacter polytrichastri str. RG4-7 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter polytrichastri 1302689 MPPL00000000.1 Bac0005742 Streptococcus cristatus AS 1.3089 "Streptococcus cristatus AS 1.3089 is a Gram-positive, cocci-shaped bacterium characterized by its facultative anaerobic metabolism. This microbe exhibits the typical morphology of streptococci, appearing as spherical cells that can exist individually or in chains. Being facultative anaerobes, Streptococcus cristatus AS 1.3089 is capable of thriving in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels often encountered in diverse ecological niches.↵↵The Gram-positive nature of this organism indicates the presence of a thick peptidoglycan layer in its cell wall, which can influence its susceptibility to antibiotics and its ability to form biofilms. Such biofilm formation is a common trait among Streptococcus species, potentially contributing to their persistence in various habitats, including oral and gastrointestinal environments, where they may play roles in microbial community dynamics.↵↵While the specific ecological role of Streptococcus cristatus AS 1.3089 has not been fully elucidated, its ability to grow under varying oxygen conditions suggests it may participate in nutrient cycling and microbial interactions in its habitat. This adaptability may confer advantages in fluctuating environments, highlighting the ecological significance of Streptococcus cristatus AS 1.3089 in maintaining microbial diversity and stability within its community." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cristatus Positive Cocci Facultative anaerobe 1302863 NC_021175.1 Bac0005743 Mycobacteroides abscessus subsp. bolletii 50594 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus 1303024 NC_021282.1 Bac0005744 Chthonomonas calidirosea T49 "Chthonomonas calidirosea T49 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 45.0°C. This organism is characterized by its inability to form spores, which may influence its survival strategies in fluctuating environmental conditions. ↵↵As a member of the microbial community, C. calidirosea T49 is adapted to high-temperature niches, suggesting a potential role in biogeochemical processes in such habitats. Its aerobic nature indicates a reliance on oxygen for metabolism, aligning with its habitat preferences in thermophilic environments where oxygen is available. ↵↵The inability to sporulate may indicate a more specialized ecological niche, where the bacterium relies on other mechanisms for survival under stress, such as nutrient acquisition or metabolic flexibility. This trait could implicate C. calidirosea T49 in specific interactions with other microorganisms present in its environment, potentially contributing to nutrient cycling processes. ↵↵Overall, the physiological traits of Chthonomonas calidirosea T49 suggest it is well-suited for life in high-temperature, oxygen-rich ecosystems, potentially influencing the microbial dynamics and ecological balance in such habitats." Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea Gram-negative rod aerobic 45 thermophilic non-spore-forming 1303518 NC_021487.1 Bac0005745 Salinisphaera hydrothermalis C41B8 "Salinisphaera hydrothermalis C41B8 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and exhibits optimal growth at a temperature of 32.0°C. This microbe is non-spore-forming, which suggests a reliance on favorable environmental conditions for its survival and proliferation. ↵↵The Gram-negative status of S. hydrothermalis indicates the presence of an outer membrane, which may contribute to its resilience in specific habitats, potentially including hydrothermal environments where it was originally isolated. Its rod shape is typical of many bacteria and may play a role in its motility and nutrient uptake, facilitating adaptation to its ecological niche.↵↵The preference for aerobic conditions indicates that S. hydrothermalis likely utilizes oxygen for metabolic processes, which may include the oxidation of organic compounds or other substrates present in its environment. This trait suggests that the organism may play a role in the biogeochemical cycling of nutrients within its habitat, possibly influencing the microbial community structure and dynamics in hydrothermal systems.↵↵Overall, the physiological traits of Salinisphaera hydrothermalis C41B8 underscore its adaptation to specific thermal environments, offering insights into the metabolic versatility and ecological roles of bacteria in extreme habitats. Its growth preferences may also provide a basis for further studies on microbial life in hydrothermal systems and their contributions to ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Salinisphaerales Salinisphaeraceae Salinisphaera Salinisphaera hydrothermalis Gram-negative rod aerobic 32 mesophilic non-spore-forming 1304275 APNK00000000.1 Bac0005746 Chryseobacterium koreense CCUG 49689 "Chryseobacterium koreense CCUG 49689 is a Gram-negative, non-spore-forming rod-shaped bacterium, with an optimal growth temperature of 29.0°C. This temperature preference suggests that C. koreense is likely to thrive in environments that are relatively warm, which may include various niches in natural and anthropogenic ecosystems. ↵↵As a member of the genus Chryseobacterium, this strain may possess traits typical of other members, such as the ability to degrade complex organic matter. While the specific metabolic capabilities of C. koreense CCUG 49689 are not detailed in the provided traits, members of this genus are often noted for their versatility in utilizing various substrates, which could imply ecological roles in nutrient cycling.↵↵The absence of sporulation indicates that this bacterium relies on other survival strategies to withstand environmental stresses. Furthermore, being rod-shaped may contribute to its motility and adaptability in diverse habitats. ↵↵Overall, the known traits of Chryseobacterium koreense CCUG 49689 position it as a potentially significant player in its ecological niche, particularly in the degradation of organic materials in warm environments, which could inform studies on microbial community dynamics and soil health." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium koreense Gram-negative rod non-motile 29 mesophilic non-spore-forming 1304281 LFNG00000000.1 Bac0005747 Caldisalinibacter kiritimatiensis str. L21-TH-D2 Bacillati Bacillota Tissierellia Tissierellales Thermohalobacteraceae Caldisalinibacter Caldisalinibacter kiritimatiensis anaerobic 1304284 ARZA00000000.1 Bac0005748 Xanthomonas axonopodis Xac29-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas axonopodis 1304892 NC_020797.1 Bac0005749 Porphyromonas crevioricanis JCM 15906 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas crevioricanis 1305617 BAOU00000000.1 Bac0005750 Bacillus solimangrovi str. GH2-4 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus solimangrovi 1305675 MJEH00000000.1 Bac0005751 Marinobacter excellens HL-55 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter excellens 1305731 LJZQ00000000.1 Bac0005752 Streptomyces sp. Amel2xC10 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Amel2xC10 1305826 FWZW00000000.1 Bac0005753 Streptomyces sp. KhCrAH-43 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. KhCrAH-43 1305827 QLLV00000000.1 Bac0005754 Xenorhabdus nematophila F1 "Xenorhabdus nematophila F1 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe and is nonsporulating. This microbe is typically found in host-associated environments, suggesting a close association with nematodes, which serves as its primary ecological niche. The ability to thrive in both aerobic and anaerobic conditions indicates a versatile metabolic capacity, allowing it to adapt to varying oxygen levels within its host environment.↵↵Xenorhabdus nematophila F1 plays a significant role in the life cycle of its nematode hosts, often providing them with essential nutrients and contributing to their overall fitness. The bacterium's habitat within the host underscores its potential roles in symbiosis, nutrient cycling, and possibly in the defense against competing microbial species. The interactions between Xenorhabdus nematophila and its nematode partners highlight a complex biological relationship that may influence the dynamics of soil ecosystems. This bacterium exemplifies how host-associated microbes can have profound implications for both the health of their hosts and the broader ecological systems in which they reside. Further exploration of its metabolic pathways and interactions may reveal additional insights into its ecological significance and potential applications in biocontrol or sustainable agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus nematophila Negative Rod No 1 2 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1306162 CAVM000000000.1 Bac0005755 Pseudomonas aeruginosa MH27 "Pseudomonas aeruginosa MH27 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives optimally at a temperature of 25.0°C and is classified as a heterotroph, indicating its reliance on organic compounds for energy. Pseudomonas aeruginosa MH27 demonstrates aerobic metabolic capabilities, necessitating the presence of oxygen for its growth and survival.↵↵Widely recognized for its versatility, Pseudomonas aeruginosa MH27 inhabits diverse environments, which may include soil, water, and various man-made settings. This adaptability allows it to exploit a range of ecological niches, contributing to its ecological significance. The organism's ability to thrive under aerobic conditions and utilize organic substrates also suggests a potential role in nutrient cycling within its habitats.↵↵The presence of Pseudomonas aeruginosa MH27 in multiple habitats could indicate its involvement in biodegradation processes, where it may contribute to the breakdown of complex organic materials. This feature highlights the potential of this strain in bioremediation applications, where microorganisms are employed to clean up contaminated environments. The ecological roles of such bacteria underscore the importance of understanding their metabolic capabilities and habitat preferences in the context of environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1306165 CBTR000000000.1 Bac0005756 Streptomyces thermolilacinus SPC6 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces thermolilacinus 1306406 ASHX00000000.2 Bac0005757 Flavobacterium commune str. PK15 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium commune 1306519 NZ_CP017774.1 Bac0005758 Paenibacillus etheri str. SH7 "Paenibacillus etheri strain SH7 is a Gram-positive, rod-shaped bacterium that exhibits the capability for sporulation, enabling it to survive in various environmental conditions. This strain thrives optimally at a temperature of 29.0 degrees Celsius and demonstrates facultative aerobe/anaerobe characteristics, allowing it to grow in both the presence and absence of oxygen. ↵↵The ability to form spores is a notable trait, as it contributes to the organism's resilience in fluctuating environmental conditions, which may include nutrient scarcity or adverse temperatures. Such an adaptive mechanism is common among members of the Paenibacillus genus, often associated with soil and plant environments, where sporulation aids in their survival during unfavorable periods.↵↵Furthermore, the facultative nature of P. etheri str. SH7 suggests potential versatility in its metabolic pathways, which may allow it to exploit a range of substrates for energy, depending on the available oxygen levels. This adaptability could be advantageous in ecological niches where oxygen availability fluctuates.↵↵Ultimately, the traits of Paenibacillus etheri str. SH7, particularly its spore-forming ability and metabolic flexibility, indicate its potential role in nutrient cycling and soil health, highlighting the importance of such microorganisms in maintaining ecosystem balance." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus etheri Gram-positive rod motile facultative aerobe/anaerobe 29 mesophilic spore-forming 1306852 LCZJ00000000.2 Bac0005759 Qipengyuania citrea LAMA 915 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Qipengyuania Qipengyuania citrea 1306953 JYNE00000000.1 Bac0005760 Marinobacter excellens LAMA 842 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter excellens 1306954 LOCO00000000.1 Bac0005761 Fusobacterium hwasookii ChDC F174 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii 1307442 NZ_CP013331.1 Bac0005762 Fusobacterium hwasookii ChDC F300 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii 1307444 NZ_CP013334.1 Bac0005763 Acetobacter indonesiensis NRIC 0313 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter indonesiensis 1307908 BAMW00000000.1 Bac0005764 Gracilibacillus halophilus YIM-C55.5 "Gracilibacillus halophilus YIM-C55.5 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and thrive in aerobic conditions. This microbe exhibits optimal growth at a temperature of 45.0°C, indicating a preference for thermophilic environments. The spore-forming capability of G. halophilus suggests it has adapted to survive in fluctuating environmental conditions, which may include exposure to extreme temperatures and desiccation. ↵↵While specific habitat information is not provided, the traits of this organism imply it may be found in high-temperature environments, potentially including saline or alkaline settings, consistent with many members of the genus Gracilibacillus. The combination of its thermophilic nature and aerobic metabolism could suggest an ecological role in nutrient cycling within such extreme environments, possibly contributing to the degradation of organic materials or the mineralization processes under high-temperature conditions. ↵↵Understanding the physiological traits of G. halophilus not only enhances our knowledge of microbial diversity but also underscores the potential for biotechnological applications, especially in processes requiring heat-stable enzymes or bioconversion of organic substrates at elevated temperatures." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gracilibacillus Gracilibacillus halophilus Gram-positive rod motile aerobic 45 thermophilic spore-forming 1308866 APML00000000.1 Bac0005765 Petrotoga sp. 9PW.55.5.1 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sp. 9PW.55.5.1 1308979 AUPM00000000.1 Bac0005766 Acinetobacter baumannii 348935 "Acinetobacter baumannii 348935 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37.0°C, which aligns with the human body temperature, suggesting it may be well adapted to warm environments. As a chemoheterotroph, A. baumannii 348935 derives its energy from organic compounds, indicating a versatile metabolic capability that allows it to inhabit diverse environments. Importantly, this microbe is an aerobe, relying on oxygen for its metabolic processes, which might constrain its habitat preferences to oxygen-rich environments.↵↵The adaptability of A. baumannii 348935 to multiple habitats may contribute to its persistence in various ecological niches, including clinical settings where it is often isolated from healthcare-associated infections. Its ability to thrive in diverse environments may also reflect a broader ecological adaptability, potentially influencing its interactions with other microorganisms and its role in biogeochemical cycling. Understanding the environmental resilience of A. baumannii 348935 can provide insights into its ecological dynamics and the challenges associated with managing its presence in both natural and anthropogenic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310605 JEVW00000000.1 Bac0005767 Acinetobacter sp. 1295259 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 1295259 1310608 JEWG00000000.1 Bac0005768 Acinetobacter sp. 1289694 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 1289694 1310609 JEWE00000000.1 Bac0005769 Acinetobacter baumannii 146457 "Acinetobacter baumannii strain 146457 is a Gram-negative, rod-shaped bacterium characterized by its single-cell arrangement and aerobic metabolism. This organism thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of the human body, suggesting its potential adaptability to warm-blooded hosts. As a chemoheterotroph, A. baumannii 146457 utilizes organic compounds as its energy source, allowing it to thrive in diverse habitats, which may include both environmental and clinical settings.↵↵The ability of A. baumannii to occupy multiple habitats indicates its ecological versatility, which is further supported by its resilience in various environments. This trait may contribute to its role in numerous ecological niches, potentially influencing microbial community dynamics. Owing to its aerobic nature, this strain requires oxygen for its metabolic processes, suggesting that it is well-suited to environments where oxygen is readily available. ↵↵Furthermore, the adaptability of A. baumannii 146457 to different habitats may enhance its survival and persistence under varying conditions, highlighting its significance in studies of microbial ecology and potential implications for public health. Understanding its ecological interactions could provide insights into its behavior in both natural and anthropogenic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310623 JEWS00000000.1 Bac0005770 Acinetobacter baumannii 496487 "Acinetobacter baumannii 496487 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is categorized as a chemoheterotroph, utilizing organic compounds as its energy source, which allows it to thrive in diverse habitats. Optimal growth occurs at a temperature of 37.0°C, indicating a preference for conditions akin to those found in warm-blooded hosts. ↵↵As an aerobic microbe, A. baumannii 496487 requires oxygen for its metabolic processes, which may influence its distribution and ecological interactions within various environments. The ability to adapt to multiple habitats suggests that this strain may have versatile survival strategies, enabling it to persist in varied ecological niches. ↵↵The adaptability of A. baumannii species, including strain 496487, to fluctuating conditions may be indicative of its resilience and potential role in various biogeochemical cycles, making it an interesting subject for further research into its ecological impact and functional capabilities in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310625 JMNR00000000.1 Bac0005771 Acinetobacter baumannii 940793 "Acinetobacter baumannii 940793 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives optimally at 37.0°C and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. A. baumannii demonstrates an aerobic metabolism, requiring oxygen for its growth and survival. ↵↵This strain has been found in a variety of habitats, indicating its adaptability to diverse environmental conditions. The presence of A. baumannii in multiple settings can suggest a notable ecological versatility, allowing it to thrive in environments ranging from clinical settings to natural ecosystems. The ability of A. baumannii to exist as a single cell may also play a role in its survival strategies, enabling it to efficiently exploit available resources in fluctuating environments. ↵↵Overall, the traits of Acinetobacter baumannii 940793 highlight its potential for resilience and adaptability, which may contribute to its persistence in various habitats, reflecting a broader ecological strategy observed in many opportunistic bacteria." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310633 JMNW00000000.1 Bac0005772 Acinetobacter sp. 1475718 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 1475718 1310652 JEWU00000000.1 Bac0005773 Acinetobacter baumannii 951631 "Acinetobacter baumannii strain 951631 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives optimally at 37.0°C, indicating a preference for temperatures akin to those found in warm-blooded hosts. As a chemoheterotroph, A. baumannii 951631 derives its energy from organic compounds, showcasing its adaptability to a variety of environments. The organism is classified as an aerobe, requiring oxygen for growth, which suggests it may be well-suited for habitats where oxygen is plentiful.↵↵The habitat of A. baumannii is described as multiple, implying a versatile ecological niche that allows it to colonize diverse environments, including those associated with human interactions. This adaptability is significant in understanding its potential roles in various ecological contexts, as well as its interactions with other microorganisms.↵↵Given its traits, A. baumannii 951631 may contribute to complex microbial communities, potentially influencing nutrient cycling and energy flow in its habitats. Understanding the ecological roles of such microbes can provide insights into their impact on environmental health and their interactions with other organisms in their ecosystems. Further research into this strain may elucidate its specific ecological contributions and the mechanisms behind its adaptability to different environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310653 JEXI00000000.1 Bac0005774 Acinetobacter baumannii 754286 "Acinetobacter baumannii strain 754286 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotroph, indicating that it derives its energy and carbon from organic compounds, which is characteristic of organisms that thrive in diverse habitats. A. baumannii 754286 has an optimal growth temperature of 37.0°C, aligning with the physiological conditions found within the human body, although it can inhabit multiple environments.↵↵As an aerobic organism, A. baumannii 754286 requires oxygen for its metabolic processes, which may enable it to exploit various ecological niches where oxygen is present. Its adaptability to diverse habitats suggests a potential for survival in both natural and anthropogenic environments. This strain's ability to thrive under aerobic conditions and its heterotrophic lifestyle may contribute to its resilience and versatility, allowing it to persist in environments with varying organic matter availability.↵↵The presence of A. baumannii in multiple habitats underscores the importance of understanding its ecological roles and interactions. This adaptability and the ability to utilize various organic substrates may facilitate its persistence in clinical and environmental contexts, highlighting the need for further research into its ecological dynamics and potential implications for public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310668 JMNU00000000.1 Bac0005775 Acinetobacter sp. 263903-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 263903-1 1310678 JMNM00000000.1 Bac0005776 Acinetobacter sp. 1566109 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 1566109 1310683 JEYB00000000.1 Bac0005777 Acinetobacter baumannii 21072 "Acinetobacter baumannii 21072 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, and it thrives in aerobic conditions, requiring oxygen for its metabolic processes. Optimal growth is observed at a temperature of 37.0°C, which is consistent with the physiological temperature of humans and many warm-blooded animals, suggesting a potential association with mammalian hosts.↵↵The habitat of Acinetobacter baumannii 21072 is diverse, allowing it to inhabit a variety of environments. This adaptability may contribute to its resilience in fluctuating ecological niches, including clinical settings and natural habitats. Given its metabolic capabilities, this organism may play a role in nutrient cycling within its environments, particularly in the degradation of organic matter. The ability to utilize a wide range of organic substrates further underscores its ecological versatility. ↵↵Overall, the traits of Acinetobacter baumannii 21072 highlight its potential as a significant player in both microbial communities and possibly as an opportunistic organism in human-associated environments, emphasizing the need for further research into its ecological interactions and implications." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310697 JMOD00000000.1 Bac0005778 Acinetobacter baumannii 1288284 "Acinetobacter baumannii strain 1288284 is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells and thrives in aerobic environments. This microbe is classified as a chemoheterotroph, indicating that it derives its energy and carbon from organic compounds, which allows it to adapt to a variety of habitats. Optimal growth occurs at a temperature of 37.0°C, suggesting a potential association with warm-blooded hosts or environments that mimic such conditions.↵↵The versatility of A. baumannii 1288284 in various habitats highlights its capacity to survive in diverse ecological niches, ranging from soil and water to clinical settings. This adaptability may contribute to its persistence in both natural and anthropogenic environments. Given its status as an aerobe, this strain requires oxygen for metabolic processes, which further informs its ecological distribution and potential interactions within microbial communities.↵↵Understanding the traits of Acinetobacter baumannii 1288284 can provide insights into its ecological roles and potential applications in bioremediation or other environmental processes. Its ability to thrive in a variety of conditions underscores the importance of studying such microbes to comprehend their functional contributions to ecosystem dynamics and their responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310709 JMOF00000000.1 Bac0005779 Acinetobacter sp. 1564232 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 1564232 1310723 JFEL00000000.2 Bac0005780 Acinetobacter sp. 742879 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 742879 1310791 JFYC00000000.1 Bac0005781 Acinetobacter sp. 1000160 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 1000160 1310800 JFWP00000000.2 Bac0005782 Acinetobacter baumannii 1571545 "Acinetobacter baumannii 1571545 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism thrives at an optimal temperature of 37.0°C and exhibits aerobic metabolism, relying on organic compounds as a heterotrophic energy source. The ability of A. baumannii 1571545 to adapt to multiple habitats suggests a versatile ecological niche, potentially allowing it to persist in a variety of environments, including those associated with human activity.↵↵As a chemoheterotroph, this strain is capable of utilizing a range of organic substrates for growth, which may contribute to its survival in diverse ecological contexts. The aerobic nature of A. baumannii 1571545 indicates its reliance on oxygen for metabolic processes, positioning it as a participant in oxygen-rich environments. The combination of these traits implies that A. baumannii 1571545 may play a role in nutrient cycling within its habitats, potentially influencing microbial community dynamics and interactions.↵↵This adaptability to various environments, coupled with its specific metabolic requirements, underscores the ecological significance of A. baumannii 1571545 and similar strains in maintaining microbial diversity and stability in their respective ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310816 JMOM00000000.1 Bac0005783 Acinetobacter sp. 263903-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 263903-2 1310834 JFDA00000000.1 Bac0005784 Acinetobacter sp. 25977_1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 25977_1 1310905 JFVP00000000.1 Bac0005785 Acinetobacter sp. 25977_2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 25977_2 1310906 JFVO00000000.1 Bac0005786 Acinetobacter sp. 25977_3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 25977_3 1310907 JFVN00000000.1 Bac0005787 Acinetobacter sp. 25977_4 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 25977_4 1310908 JFVM00000000.1 Bac0005788 Acinetobacter sp. 25977_7 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 25977_7 1310911 JFVK00000000.1 Bac0005789 Acinetobacter baumannii 25977_9 "Acinetobacter baumannii strain 25977_9 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which aligns with its ability to thrive in diverse habitats. Optimal growth occurs at 37.0°C, suggesting a preference for temperatures commonly found in warm-blooded hosts or environments that mimic such conditions.↵↵As an aerobic organism, A. baumannii 25977_9 requires oxygen for its metabolic processes, which may influence its ecological niches, allowing it to inhabit environments with ample oxygen availability. Its versatile habitat range suggests that it can adapt to various ecological settings, potentially including both natural and man-made environments. This adaptability may contribute to its persistence and survival in different conditions, although specific ecological roles and interactions with other microorganisms were not detailed in the provided traits.↵↵In summary, Acinetobacter baumannii 25977_9 exemplifies a highly adaptable, aerobic, Gram-negative bacterium that can occupy a variety of ecological niches, highlighting its potential resilience in fluctuating environmental conditions. Such traits may facilitate its survival in both natural ecosystems and clinical settings, where it could be encountered under diverse circumstances." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310913 JMPF00000000.1 Bac0005790 Acinetobacter sp. 25977_10 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 25977_10 1310914 JFVQ00000000.1 Bac0005791 Acinetobacter lwoffii ATCC 9957 = CIP 70.31 "Acinetobacter lwoffii ATCC 9957 (CIP 70.31) is a Gram-negative, aerobic bacterium characterized by its robust metabolic capabilities in oxygen-rich environments. This species is part of the Acinetobacter genus, which is notable for its environmental resilience and versatility. A. lwoffii ATCC 9957 has been documented to thrive in various habitats, including soil and water, where it can play a role in nutrient cycling and the degradation of organic matter.↵↵As a strictly aerobic organism, A. lwoffii ATCC 9957 requires oxygen for its growth and metabolism. This trait suggests that the microbe is well-adapted to environments where oxygen is readily available, which may influence its ecological interactions and distribution. Understanding the physiological requirements of A. lwoffii ATCC 9957 can provide insights into its potential applications in bioremediation, where oxygen-dependent processes are crucial for the breakdown of pollutants.↵↵Moreover, the ability of A. lwoffii to survive in diverse environments underscores its ecological significance. It may contribute to the microbial community dynamics in various ecosystems, potentially influencing the overall health and function of these environments. Further research into its metabolic pathways and interactions with other microorganisms could reveal additional roles this bacterium plays in its native habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Aerobe 1311804 APQT00000000.1 Bac0005792 Roseovarius litorisediminis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius litorisediminis 1312363 FWFL00000000.1 Bac0005793 Pseudoalteromonas agarivorans DSM 14585 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas agarivorans 1312369 NZ_CP011012.1 Bac0005794 Thermoanaerobaculum aquaticum str. MP-01 "Thermoanaerobaculum aquaticum strain MP-01 is a Gram-negative, rod-shaped bacterium that thrives in strictly anaerobic conditions, with an optimal growth temperature of 45.0°C. This organism is characterized by its inability to form spores, which may suggest a reliance on stable environmental conditions for survival and reproduction. As a member of the Thermoanaerobaculum genus, this strain is likely adapted to high-temperature, low-oxygen environments, potentially contributing to the biogeochemical cycling of organic matter in such habitats. The physiological traits of T. aquaticum str. MP-01 make it a candidate for further investigation into the metabolic pathways utilized in anaerobic fermentation processes, which could have implications for bioenergy applications and the understanding of microbial ecology in thermal aquatic ecosystems." Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae Thermoanaerobaculum Thermoanaerobaculum aquaticum Gram-negative rod non-motile anaerobic 45 thermophilic non-spore-forming 1312852 JMFG00000000.1 Bac0005795 Williamsia sp. D3 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia sp. D3 1313067 AYTE00000000.1 Bac0005796 Borrelia hermsii MTW Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia hermsii 1313291 NZ_CP005680.1 Bac0005797 Borrelia anserina BA2 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia anserina 1313293 NZ_CP005829.1 Bac0005798 Paenibacillus uliginis N3/975 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus uliginis 1313296 NZ_LT840184.1 Bac0005799 Chitinivibrio alkaliphilus ACht1 Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales Chitinivibrionaceae Chitinivibrio Chitinivibrio alkaliphilus anaerobic 1313304 ASJR00000000.1 Bac0005800 Pseudoalteromonas espejiana DSM 9414 str. ATCC 29659 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas espejiana 1314869 NZ_CP011029.1 Bac0005801 Arcobacter aquimarinus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter aquimarinus 1315211 NXIJ00000000.1 Bac0005802 Pseudoalteromonas translucida KMM 520 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas translucida 1315283 NZ_CP011034.1 Bac0005803 Sphingobium sp. TKS Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. TKS 1315974 NZ_CP005083.1 Bac0005804 Veillonella parvula HSIVP1 "Veillonella parvula HSIVP1 is a Gram-negative, anaerobic cocci that typically exists in pairs or chains. This microbe is host-associated, indicating a specific relationship with its host organism. The anaerobic nature of V. parvula HSIVP1 suggests it thrives in environments devoid of oxygen, which is often the case in the human microbiome, particularly in the oral cavity and gastrointestinal tract. ↵↵Veillonella species, including V. parvula, are known to play a role in the fermentation of lactate, a byproduct of carbohydrate metabolism, converting it into short-chain fatty acids that can be utilized by other microbial communities in the host. This metabolic activity may contribute to the overall balance of gut microbiota and influence host health. ↵↵The presence of V. parvula HSIVP1 in host-associated environments underscores its potential role in maintaining microbial diversity and stability within these ecosystems. Understanding the interactions and contributions of such anaerobic organisms may provide insights into their significance in host-microbe symbiosis and the broader implications for microbial ecology." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella parvula Negative Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Chains - Pairs 1316254 ASKE00000000.1 Bac0005805 Streptococcus sp. HSISM1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HSISM1 1316408 ASKI00000000.1 Bac0005806 Streptococcus sp. HSISB1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HSISB1 1316409 ASKA00000000.1 Bac0005807 Streptococcus sp. HSISS2 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HSISS2 1316411 ASKC00000000.1 Bac0005808 Streptococcus sp. HSISS3 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HSISS3 1316412 ASKH00000000.1 Bac0005809 Capnocytophaga sp. oral taxon 864 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 864 1316593 NZ_CP027233.1 Bac0005810 Altererythrobacter xiamenensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Altererythrobacter Altererythrobacter xiamenensis 1316679 FXWG00000000.1 Bac0005811 Magnetospirillum fulvum MGU-K5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum fulvum 1316936 AQPH00000000.1 Bac0005812 Roseovarius sp. 22II1-1F6A Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius sp. 22II1-1F6A 1317112 AQQQ00000000.1 Bac0005813 Oceanicola sp. 22II-s10i Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Oceanicola Oceanicola sp. 22II-s10i 1317116 AQQU00000000.1 Bac0005814 Aquimarina atlantica str. 22II-S11-z7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aquimarina Aquimarina atlantica 1317122 AQRA00000000.1 Bac0005815 Stappia sp. 22II-S9-Z10 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Stappia Stappia sp. 22II-S9-Z10 1317123 AQRB00000000.1 Bac0005816 Cetobacterium somerae ATCC BAA-474 "Cetobacterium somerae ATCC BAA-474 is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This microbe is a heterotroph, relying on organic compounds for its energy and carbon needs, which it obtains primarily from its environment. As an obligate anaerobe, Cetobacterium somerae can only grow in environments devoid of oxygen, making it particularly adaptable to specific niches within its habitats. Cetobacterium somerae is predominantly found in the gastrointestinal tracts of various aquatic organisms, especially freshwater fish. This suggests a significant ecological role, as it assists in the digestion of complex carbohydrates and proteins within its host's gut. The presence of such bacteria in the digestive systems of fish indicates a symbiotic relationship that enhances nutrient absorption and overall health of the host.The significance of Cetobacterium somerae extends beyond its role in fish digestion. Research has highlighted its potential in aquaculture, as it may contribute to the prevention of pathogenic bacteria, thereby promoting fish health. Furthermore, this microbe demonstrates unique metabolic capabilities, including the production of short-chain fatty acids, which serve as essential energy sources for the host.Studies also indicate that Cetobacterium somerae is of interest in biotechnology and environmental monitoring due to its ability to degrade various organic compounds. This characteristic could be harnessed for applications in waste treatment and bioremediation, showcasing its versatility and value in both natural ecosystems and industrial processes." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae Negative Anaerobe 1319815 AXZF00000000.1 Bac0005817 Mesobacillus selenatarsenatis SF-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Mesobacillus Mesobacillus selenatarsenatis 1321606 BASE00000000.1 Bac0005818 Aggregatibacter sp. oral taxon 458 str. W10330 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter sp. oral taxon 458 1321772 AWSH00000000.1 Bac0005819 Leptotrichia sp. oral taxon 225 str. F0581 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 225 1321774 AWVS00000000.1 Bac0005820 Clostridiales bacterium oral taxon 876 str. F0540 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium oral taxon 876 1321778 AWSZ00000000.1 Bac0005821 Leptotrichia sp. oral taxon 215 str. W9775 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215 1321779 AWVR00000000.1 Bac0005822 Peptostreptococcaceae bacterium oral taxon 113 str. W5053 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcaceae bacterium oral taxon 113 1321784 AWVB00000000.1 Bac0005823 Treponema lecithinolyticum ATCC 700332 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema lecithinolyticum 1321815 AWVH00000000.1 Bac0005824 Bacteroides pyogenes F0041 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides pyogenes 1321819 AWSV00000000.1 Bac0005825 Porphyromonas gingivalis F0566 "Porphyromonas gingivalis F0566 is a Gram-negative, rod-shaped bacterium that is nonsporulating and thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature. This species is an anaerobe, indicating that it requires an oxygen-free environment for growth and metabolism. As a host-associated microbe, P. gingivalis F0566 is primarily found in association with mammalian hosts, suggesting its adaptation to specific niches within host organisms, particularly in the oral cavity.↵↵The anaerobic nature of P. gingivalis F0566 implies that it likely engages in metabolic processes that do not require oxygen, possibly utilizing fermentation pathways to derive energy. This metabolic capability may allow it to coexist with other microbial species in the complex oral microbiome, where varying oxygen levels can influence community dynamics. Understanding the ecological roles of such anaerobic bacteria is crucial, as they may contribute to the maintenance of microbial balance within their host environments. The presence of P. gingivalis F0566 in the oral cavity may be indicative of its involvement in specific biochemical interactions that could influence overall oral health and disease states. Thus, studying this microbe offers insights into the intricate relationships between anaerobic bacteria and their hosts in the context of microbial ecology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1321822 AWVD00000000.1 Bac0005826 Helicobacter pylori UM066 "Helicobacter pylori UM066 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape (spirilla) and single-cell arrangement. This organism thrives at an optimal temperature of 37.0°C, which aligns with its habitat, typically associated with the gastrointestinal tract of its host. ↵↵As a member of the Helicobacter genus, H. pylori UM066 is adapted to survive in low-oxygen environments, reflecting its microaerophilic nature. This adaptation is crucial for its persistence in the gastric mucosa, where it often resides. The ability to maintain viability under such conditions suggests a specialized metabolic pathway that allows it to cope with the harsh acidic environment of the stomach while still requiring some oxygen for respiration.↵↵The ecological role of Helicobacter pylori UM066 may extend beyond mere colonization. Its unique spiral morphology may facilitate motility within the viscous gastric mucus, aiding in its ability to navigate and establish itself in the host environment. Further investigation into the specific interactions between H. pylori UM066 and its host could provide insights into its potential impact on gastric health and the overall microbiome dynamics in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1321940 NC_021218.3 Bac0005827 Myroides indicus str. DSM 28213 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides indicus 1323422 SOAG00000000.1 Bac0005828 Paraburkholderia caribensis MBA4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caribensis 1323664 NZ_CP012746.1 Bac0005829 Arsukibacterium tuosuense Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Arsukibacterium Arsukibacterium tuosuense 1323745 OBEB00000000.1 Bac0005830 Mycobacterium sp. TKK-01-0059 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. TKK-01-0059 1324269 JLXO00000000.1 Bac0005831 Pseudomonas fluorescens LMG 5329 "Pseudomonas fluorescens LMG 5329 is a Gram-negative, rod-shaped bacterium that exists as single cells and thrives in a variety of habitats. This organism exhibits heterotrophic metabolism, utilizing organic compounds as energy sources, which is characteristic of many members of the Pseudomonas genus. Optimal growth occurs at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions.↵↵As an aerobic bacterium, Pseudomonas fluorescens LMG 5329 requires oxygen for its metabolic processes, which positions it well within environments rich in organic matter and oxygen, such as soil and water ecosystems. The ability of this strain to adapt to multiple habitats indicates a versatile ecological role, likely contributing to nutrient cycling and organic matter degradation.↵↵This strain’s metabolic flexibility and ecological adaptability highlight its potential involvement in biogeochemical processes, particularly in the degradation of pollutants and organic materials. Given its heterotrophic nature and aerobic requirements, Pseudomonas fluorescens LMG 5329 may play a significant role in promoting soil health and influencing microbial community dynamics in its native environments. This underscores the importance of studying such microbes for their contributions to ecological balance and sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1324332 ASGY00000000.1 Bac0005832 Acinetobacter equi str. 114 "Acinetobacter equi strain 114 is a Gram-negative, rod-shaped bacterium that exhibits aerobic growth characteristics. This organism is part of the Acinetobacter genus, which is known for its environmental resilience and adaptability to various habitats. As a Gram-negative microbe, A. equi str. 114 possesses a characteristic outer membrane that includes lipopolysaccharides, which may contribute to its survival in diverse environments.↵↵The aerobic nature of A. equi str. 114 indicates that it requires oxygen for its metabolic processes, suggesting that it may thrive in oxygen-rich environments. This trait positions it as a potential inhabitant of soil or water ecosystems where oxygen levels are sufficient for aerobic respiration. The rod shape of this bacterium may also influence its motility and colonization abilities in its natural habitat.↵↵While specific ecological roles and interactions of A. equi str. 114 have not been detailed, its classification within the Acinetobacter genus hints at a potential for environmental persistence. Acinetobacter species are often noted for their versatility, which may allow A. equi str. 114 to exploit various ecological niches. Further research may elucidate its specific roles in biogeochemical cycles or its interactions with other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter equi Gram-negative rod non-motile aerobic 1324350 NZ_CP012808.1 Bac0005833 Paraburkholderia aspalathi Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia aspalathi 1324617 FPBH00000000.1 Bac0005834 Bradyrhizobium guangdongense str. CCBAU 51649 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium guangdongense 1325090 NZ_CP030052.1 Bac0005835 Bradyrhizobium guangzhouense str. CCBAU 53426 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium guangzhouense 1325095 RDQZ00000000.1 Bac0005836 Paenibacillus silvae str. NC2 "Paenibacillus silvae str. NC2 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its facultative aerobic/anaerobic metabolic capabilities. This organism exhibits optimal growth at 32.0°C, indicating a preference for moderate temperature conditions. The capacity for sporulation suggests that P. silvae str. NC2 can endure adverse environmental conditions, allowing it to survive in various habitats where nutrient availability may fluctuate.↵↵The facultative nature of its oxygen requirement implies that this strain can adapt to both aerobic and anaerobic environments, which may enhance its ecological versatility. This adaptability is significant for survival in diverse ecosystems, potentially allowing P. silvae str. NC2 to play a role in nutrient cycling or the degradation of organic matter in soil or other substrates.↵↵Overall, the combination of its Gram-positive status, rod morphology, and ability to form spores positions Paenibacillus silvae str. NC2 as a resilient microorganism capable of thriving in changing environmental conditions. This resilience, coupled with its metabolic flexibility, may provide insights into its potential roles in biogeochemical processes and its interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus silvae Gram-positive rod non-motile facultative aerobe/anaerobe 32 mesophilic spore-forming 1325358 QKWW00000000.1 Bac0005837 Tenacibaculum caenipelagi str. CECT 8283 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum caenipelagi 1325435 SNYH00000000.1 Bac0005838 halophilic archaeon J07HX5 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales halophilic archaeon J07HX5 1325472 ARPW00000000.1 Bac0005839 Brevundimonas vancanneytii "Brevundimonas vancanneytii is a Gram-negative, rod-shaped bacterium that demonstrates notable characteristics in its growth and environmental preferences. This microbe is non-spore-forming, which suggests that it relies on other survival strategies to endure unfavorable conditions rather than entering a dormant spore state. Optimal growth occurs at a temperature of approximately 29.0°C, indicating a preference for moderate temperatures that could reflect its adaptation to specific ecological niches.↵↵The non-sporulating nature of B. vancanneytii may also imply a reliance on moisture-rich environments, as it does not have the ability to withstand desiccation typically conferred by sporulation. This trait, combined with its optimal growth temperature, suggests that B. vancanneytii may be well-suited to thrive in environments such as soil or aquatic systems where temperatures remain relatively stable and moisture is abundant.↵↵Further investigations into the ecological roles of B. vancanneytii could provide insights into its interactions with other microorganisms and its potential contributions to nutrient cycling within its habitat. The understanding of its growth conditions and physiological traits may also aid in elucidating its ecological significance, particularly in environments where temperature and moisture levels fluctuate, influencing microbial community dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas vancanneytii Gram-negative rod 29 mesophilic non-spore-forming 1325724 NZ_LR588407.1 Bac0005840 Bacillus australimaris str. NH7I_1 "Bacillus australimaris str. NH7I_1 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and has an optimal growth temperature of 32.0°C. As a non-spore-forming organism, it distinguishes itself from many other members of the Bacillus genus, which are typically characterized by their ability to form spores under adverse conditions. ↵↵This trait may imply a reliance on stable environmental conditions for survival and growth, potentially limiting its ecological niche compared to more resilient spore-forming relatives. The preference for aerobic conditions suggests that B. australimaris str. NH7I_1 likely participates in processes that require oxygen, which could influence its interactions with other microorganisms and its role in biogeochemical cycles.↵↵Overall, the specific traits of Bacillus australimaris str. NH7I_1 highlight its potential as an organism adapted to particular environmental conditions, possibly influencing its applications in biotechnology or environmental microbiology. Further studies could elucidate its specific ecological roles and relationships within its habitat." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus australimaris Gram-positive rod aerobic 32 mesophilic non-spore-forming 1326968 LGYN00000000.1 Bac0005841 Candidatus Aramenus sulfurataquae Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Candidatus Aramenus Candidatus Aramenus sulfurataquae 1326980 ASRH00000000.1 Bac0005842 Sphingomonas psychrotolerans Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas psychrotolerans 1327635 NZ_CP024923.1 Bac0005843 Rhizobium etli bv. mimosae str. Mim1 "Rhizobium etli bv. mimosae str. Mim1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobe, requiring oxygen for growth. This strain is host-associated, indicating a symbiotic relationship with host plants, particularly within the legume family. ↵↵Rhizobium etli bv. mimosae str. Mim1 is known for its role in biological nitrogen fixation, a process crucial for enhancing soil fertility and supporting plant growth. This bacterium forms nodules on the roots of its legume hosts, where it converts atmospheric nitrogen into a form that is usable by plants, thereby playing a vital role in nutrient cycling within ecosystems.↵↵The ability of R. etli bv. mimosae str. Mim1 to thrive in a host-associated environment underscores its potential importance in sustainable agriculture, particularly in nitrogen-poor soils. By fostering the growth of leguminous plants, it contributes not only to the health of individual plants but also to the overall stability and productivity of agricultural systems. Understanding the specific interactions between this strain and its host plants could provide insights into optimizing legume cultivation and enhancing soil health in various agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Singles 1328306 NC_021906.1 Bac0005844 Azotobacter chroococcum NCIMB 8003 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter chroococcum 1328314 NZ_CP010417.1 Bac0005845 Cellulophaga geojensis KL-A "Cellulophaga geojensis KL-A is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is notable for its non-spore-forming nature, which distinguishes it from other members of the bacterial domain that employ sporulation as a survival strategy under unfavorable conditions. ↵↵The morphology and metabolic characteristics of Cellulophaga geojensis KL-A suggest it may play a role in specific ecological niches, particularly those involving the degradation of organic materials. The Gram-negative cell wall structure typically confers resistance to certain environmental stresses and may facilitate interactions with other microorganisms in its habitat. ↵↵Due to its aerobic requirements, Cellulophaga geojensis KL-A is likely to inhabit environments rich in oxygen, such as surface waters or well-aerated soils. This positioning may allow it to contribute to carbon cycling and the breakdown of complex organic compounds, thus playing a potential role in nutrient recycling within its ecosystem. Understanding the ecological functions of Cellulophaga geojensis KL-A could yield insights into its contributions to microbial communities and biogeochemical processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga geojensis Gram-negative rod motile aerobic 25 mesophilic non-spore-forming 1328323 ARZX00000000.1 Bac0005846 Lactobacillus crispatus EM-LC1 "Lactobacillus crispatus EM-LC1 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments. L. crispatus EM-LC1 is host-associated, suggesting a symbiotic relationship with its host, which may provide essential nutrients and a suitable environment for growth.↵↵The presence of L. crispatus EM-LC1 in host-associated habitats highlights its potential role in maintaining a balanced microbiome. This species is known for its ability to produce lactic acid, which can lower the pH of its environment, potentially inhibiting the growth of pathogenic microorganisms and contributing to the overall health of its host. By outcompeting harmful bacteria and contributing to the acidic environment, L. crispatus EM-LC1 may play a significant part in the modulation of host immune responses.↵↵Further research into the specific interactions and benefits of L. crispatus EM-LC1 within its host could provide deeper insights into its ecological significance and potential applications in probiotics or microbiome management. Understanding how this strain adapts to varying oxygen levels while maintaining its beneficial properties could also inform strategies for harnessing its capabilities in health-related interventions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains 1328863 AXLM00000000.1 Bac0005847 Rathayibacter rathayi NCPPB 2980 = VKM Ac-1601 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter rathayi 1328865 OCNL00000000.1 Bac0005848 Rathayibacter iranicus NCPPB 2253 = VKM Ac-1602 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter iranicus 1328868 QGDV00000000.1 Bac0005849 Weissella oryzae SG25 "Weissella oryzae SG25 is a Gram-positive, non-spore-forming rod-shaped bacterium. This microbe is part of the Weissella genus, which is known for its role in fermentation processes. Its Gram-positive nature indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria. The rod shape of Weissella oryzae SG25 suggests it may possess specific metabolic capabilities that facilitate its survival and functionality in various environments.↵↵Given its classification within the Weissella genus, Weissella oryzae SG25 may contribute to the fermentation of plant-based materials, potentially playing a role in the production of fermented foods or beverages. While specific ecological or pathogenic roles are not defined in the current data, the existence of Weissella species in diverse ecological niches suggests a potential for symbiotic interactions with other microorganisms or host organisms.↵↵Overall, Weissella oryzae SG25 exemplifies the diversity of the Weissella genus, highlighting its non-spore-forming nature and rod morphology, which may confer advantages in specific fermentation processes. Further research may reveal its specific applications in food science or industrial microbiology, illuminating the broader ecological significance of this microbe in fermentation ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella oryzae Gram-positive rod non-motile non-spore-forming 1329250 BAWR00000000.1 Bac0005850 Mobilisporobacter senegalensis str. DSM 26537 "Mobilisporobacter senegalensis str. DSM 26537 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This microbe thrives optimally at a temperature of approximately 29.0°C and is strictly anaerobic, indicating that it requires an oxygen-free environment for growth and metabolic activity. ↵↵The spore-forming capability of M. senegalensis suggests a potential resilience to adverse environmental conditions, allowing the organism to survive in habitats where oxygen levels are low or fluctuating. This trait may also facilitate its dispersal in anaerobic niches, contributing to its ecological role within such environments. ↵↵Given these characteristics, M. senegalensis may play a significant role in anaerobic microbial communities, possibly influencing nutrient cycling and organic matter degradation in sedimentary or subsurface environments. Its adaptation to specific thermal and oxygen conditions highlights the diverse strategies microorganisms employ to thrive in ecological niches characterized by limited resources." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mobilisporobacter Mobilisporobacter senegalensis Gram-positive rod motile anaerobic 29 mesophilic spore-forming 1329262 RJVG00000000.1 Bac0005851 Bacillus bombysepticus str. Wang str. wang Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus bombysepticus 1330043 NZ_CP007512.1 Bac0005852 Lampropedia puyangensis str. 2-bin Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Lampropedia Lampropedia puyangensis 1330072 STFG00000000.1 Bac0005853 Kosmotoga pacifica str. SLHLJ1 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Kosmotoga Kosmotoga pacifica anaerobic 1330330 NZ_CP011232.1 Bac0005854 Ruminiclostridium papyrosolvens C7 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminiclostridium Ruminiclostridium papyrosolvens 1330534 ATAY00000000.1 Bac0005855 Pasteurella multocida subsp. multocida P1062 "Pasteurella multocida subsp. multocida P1062 is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 37.0°C. This organism is classified as a facultative anaerobe, allowing it to adapt to both aerobic and anaerobic environments, thereby enhancing its survival in diverse host-associated habitats. ↵↵As a member of the genus Pasteurella, P. multocida subsp. multocida P1062 is typically associated with animals, particularly domesticated species, where it may play a role in various biological processes. The bacterium's ability to grow in the presence or absence of oxygen suggests a versatile metabolic capability that may contribute to its persistence in host tissues and its interactions with the host's immune system.↵↵Given that this subspecies is host-associated, it likely engages in complex ecological relationships within its environment, potentially influencing microbial community dynamics. Understanding the specific interactions of P. multocida subsp. multocida P1062 within its host-associated habitat could provide insights into its ecological role and contributions to host health or disease. Further research into its metabolic pathways and interactions with other microbial species is warranted to elucidate its biological significance in host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 1331042 ASZP00000000.2 Bac0005856 Sphingobium lactosutens DS20 "Sphingobium lactosutens DS20 is a Gram-negative, non-spore-forming bacterium characterized by its rod shape and aerobic metabolism. This microbe thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. As a member of the Sphingobium genus, it is likely to possess unique metabolic capabilities that may contribute to its ecological niche.↵↵The Gram-negative nature of S. lactosutens DS20 indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microorganisms and its response to environmental stressors. Its aerobic requirement further implies that this bacterium relies on oxygen for its energy production, potentially positioning it within oxygen-rich habitats.↵↵Given its traits, Sphingobium lactosutens DS20 may play a role in the degradation of organic compounds in its environment, a trait commonly associated with members of the Sphingobium genus. This metabolic versatility could be particularly relevant in bioremediation efforts, where such bacteria are employed to break down pollutants. The ability to thrive under specific temperature conditions while maintaining aerobic metabolism may also suggest a competitive advantage in certain ecological niches, allowing S. lactosutens DS20 to contribute to nutrient cycling and microbial community dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium lactosutens Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1331060 ATDP00000000.1 Bac0005857 Bordetella bronchiseptica OSU553 "Bordetella bronchiseptica OSU553 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 35.0°C. This strain is classified as host-associated, indicating its presence in association with specific host organisms. The Gram-negative status of B. bronchiseptica OSU553 suggests a complex cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interactions with host immune systems.↵↵The aerobe nature of this microbe implies that it requires oxygen for its growth and metabolic processes, which could influence its ecological niche within host environments. The optimal growth temperature aligns with typical mammalian body temperatures, suggesting that B. bronchiseptica OSU553 may be adapted to colonize warm-blooded hosts. This adaptation not only facilitates its survival but may also influence its physiological and biochemical properties.↵↵Understanding the environmental conditions and growth requirements of B. bronchiseptica OSU553 can provide insights into its potential roles within host-associated microbiomes. Its specialized adaptations may contribute to its ecological interactions and underscore the importance of temperature and oxygen levels in shaping the dynamics of host-microbe relationships." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchiseptica Negative Rod Yes 1 2 Aerobe 35 Mesophilic HostAssociated 1331242 JGXZ00000000.1 Bac0005858 Streptomyces sparsogenes DSM 40356 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sparsogenes 1331668 ASQP00000000.1 Bac0005859 Pantoea sp. AS-PWVM4 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. AS-PWVM4 1332069 ASZC00000000.1 Bac0005860 Sphingobium wenxiniae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium wenxiniae 1332080 NZ_CP013268.1 Bac0005861 Paenibacillus durus ATCC 35681 "Paenibacillus durus ATCC 35681 is a rod-shaped bacterium characterized by its distinctive morphology and is part of the diverse genus Paenibacillus. This organism is notable for its resilience and adaptability, which may be attributed to its ability to thrive in various environmental conditions. ↵↵While specific metabolic capabilities and ecological roles have not been detailed, members of the Paenibacillus genus are generally known for their capacity to degrade complex organic materials, contributing to nutrient cycling in soil and potentially playing a role in plant growth promotion. This suggests that Paenibacillus durus ATCC 35681 could be involved in beneficial interactions within its environment, possibly enhancing soil fertility or plant health through symbiotic relationships.↵↵Overall, the rod-shaped morphology of Paenibacillus durus ATCC 35681 positions it within a group of bacteria that exhibit significant functional diversity and ecological importance, particularly in soil ecosystems where they may mediate interactions with plants and other microorganisms." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus durus Rod 1333534 NZ_CP011114.1 Bac0005862 Polaribacter atrinae str. KACC 17473 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter atrinae 1333662 LVWE00000000.1 Bac0005863 Aquipseudomonas alcaligenes OT 69 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Aquipseudomonas Aquipseudomonas alcaligenes 1333854 ATCP00000000.1 Bac0005864 Streptococcus oralis subsp. tigurinus 2426 "Streptococcus oralis subsp. tigurinus 2426 is a Gram-positive coccus that typically forms pairs or chains, reflecting its characteristic arrangement. This subspecies is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may enhance its adaptability within various host-associated habitats. ↵↵As a member of the Streptococcus genus, S. oralis subsp. tigurinus is closely associated with human oral microbiota, where it plays a role in maintaining microbial balance. Its facultative anaerobic nature suggests that it can efficiently utilize available oxygen when present, while also being capable of fermentative metabolism in oxygen-depleted conditions. This metabolic flexibility may contribute to its survival and persistence in diverse niches within the host.↵↵The host-associated habitat of S. oralis subsp. tigurinus underscores its potential importance in oral health, as it exists in a complex ecosystem alongside other microbial species. Understanding the traits of this subspecies could provide insights into its interactions within the oral microbiome, potentially influencing microbial community dynamics and host responses. The ability of S. oralis subsp. tigurinus to adapt to varying oxygen levels may facilitate its role in biofilm formation, which is a critical aspect of its ecological function in the oral cavity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1333865 ASXA00000000.1 Bac0005865 Tepidicaulis marinus str. MA2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Parvibaculaceae Tepidicaulis Tepidicaulis marinus 1333998 BBIO00000000.1 Bac0005866 Zunongwangia mangrovi Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zunongwangia Zunongwangia mangrovi 1334022 FOKV00000000.1 Bac0005867 Levilactobacillus brevis BSO 464 "Levilactobacillus brevis BSO 464 is a Gram-positive, rod-shaped bacterium that typically occurs in chains or as single cells. This microbe thrives in various habitats and exhibits facultative anaerobic metabolic capabilities, allowing it to adapt to both aerobic and anaerobic environments. Its optimal growth temperature is approximately 25°C, indicating a preference for moderate conditions that may reflect its ecological versatility.↵↵As a member of the Lactobacillus genus, L. brevis BSO 464 is likely involved in fermentative processes, which are crucial in food production and preservation. The presence of this strain in diverse environments suggests its potential utility in fermentative applications, as well as its role in microbial communities where it may contribute to the fermentation of carbohydrates. ↵↵The ability of L. brevis BSO 464 to exist in both oxygen-rich and oxygen-poor conditions enhances its adaptability, potentially allowing it to flourish in varied ecological niches. This adaptability may also play a significant role in its interactions with other microbes, possibly influencing local microbial dynamics and fermentation processes. Understanding the ecological roles and metabolic flexibility of L. brevis BSO 464 could provide insights into its applications in biotechnology and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1334191 NZ_CP005979.1 Bac0005868 Listeria monocytogenes EGD "Listeria monocytogenes EGD is a Gram-positive, rod-shaped bacterium that typically forms chains or can be found as single cells. This organism demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a chemoorganotroph, L. monocytogenes EGD derives its energy from organic compounds, which is indicative of its adaptability to various habitats. ↵↵The optimal growth temperature for this strain is around 30.0°C, suggesting a preference for mesophilic conditions, which are commonly encountered in diverse ecological niches. L. monocytogenes is often found in environments associated with food products, highlighting its potential to inhabit habitats that facilitate its survival and transmission.↵↵Given its ability to grow in a range of oxygen levels and its preference for moderate temperatures, L. monocytogenes EGD exemplifies the versatility of microbial life in adapting to fluctuating environmental conditions. Such adaptability may contribute to its persistence in varied habitats, including those associated with food processing and storage, where temperature and oxygen availability can vary significantly. This resilience underscores the importance of understanding microbial behavior in relation to food safety and public health." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles 1334565 NC_022568.1 Bac0005869 Roseomonas rhizosphaerae str. YW11 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Teichococcus rhizosphaerae 1335062 PDNU00000000.1 Bac0005870 Burkholderia sp. AU4i Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. AU4i 1335308 ASSI00000000.1 Bac0005871 Mycolicibacterium elephantis DSM 44368 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium elephantis 1335622 ATDN00000000.1 Bac0005872 Paenirhizobium selenitireducens ATCC BAA-1503 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Paenirhizobium Paenirhizobium selenitireducens 1336235 UEYP00000000.1 Bac0005873 Spiroplasma monobiae MQ-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma monobiae microaerophile 1336748 NZ_CP025543.1 Bac0005874 Spiroplasma floricola 23-6 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma floricola microaerophile 1336749 NZ_CP025057.1 Bac0005875 Vibrio fluvialis PG41 "Vibrio fluvialis PG41 is a Gram-negative, rod-shaped bacterium that thrives in warm aquatic environments, categorizing it as a mesophilic organism. As a chemoheterotroph, it derives its energy and carbon from organic compounds, often found in nutrient-rich waters. This microbe is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions, enhancing its adaptability in various ecological niches. The Gram-negative nature of Vibrio fluvialis PG41 means it has a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, giving it unique pathogenic properties and influencing its interactions within aquatic ecosystems. Its rod-shaped morphology, typically ranging from 0.5 to 0.8 micrometers in diameter and 1.5 to 2.5 micrometers in length, contributes to its motility, facilitated by a single polar flagellum. This motility is essential for navigating through its aquatic habitat and potentially reaching human hosts. Vibrio fluvialis is typically found in brackish and freshwater environments, often associated with shellfish and contaminated water, making it an important organism in the study of waterborne pathogens. Human infections are relatively rare but can occur, particularly in individuals with weakened immune systems. Symptoms of infection may include gastroenteritis and, in more severe cases, septicemia. Recent research highlights the genome of V. fluvialis PG41, revealing genes that contribute to its virulence and survival strategies, including antibiotic resistance mechanisms. These insights emphasize the bacterium's role in both public health and environmental microbiology, making it a significant focus for ongoing studies aimed at understanding its ecological impact and potential health risks." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fluvialis Negative Aerobe 1336752 ASXS00000000.1 Bac0005876 Gillisia sp. Hel1_33_143 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Gillisia Gillisia sp. Hel1_33_143 1336796 NZ_LT629737.1 Bac0005877 Murimonas intestini str. DSM 26524 "Murimonas intestini str. DSM 26524 is a Gram-positive, nonsporulating bacterium that exhibits chemoheterotrophic metabolism, deriving energy from organic compounds. This strain is found within the intestinal microflora of animals, where it thrives in an anaerobic environment. ↵↵As a member of the gut microbiota, Murimonas intestini plays a potential role in the fermentation of dietary fibers and the production of short-chain fatty acids, contributing to the overall health of the host's gastrointestinal system. The anaerobic nature of this bacterium suggests it is adapted to the low-oxygen conditions prevalent in the intestinal tract, where it may interact with other microbial populations, influencing microbial diversity and community dynamics. ↵↵The presence of Murimonas intestini in the intestinal microflora underscores the importance of anaerobic bacteria in maintaining gut homeostasis and suggests potential avenues for exploring its role in nutrient metabolism and host-microbe interactions. Further research could illuminate its contributions to gut health, particularly in the context of dietary changes and their impact on the microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Murimonas Murimonas intestini Positive No 1 anaerobic Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1337051 QGGY00000000.1 Bac0005878 Helicobacter pylori PZ5004 "Helicobacter pylori PZ5004 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and presence as single cells. This strain thrives optimally at 37.0°C, which coincides with the average human body temperature, indicating its adaptation to a host-associated habitat. ↵↵Helicobacter pylori is well-known for its colonization of the gastric mucosa, where it can establish a complex relationship with the host's immune system. Its microaerophilic nature suggests a requirement for reduced oxygen levels, which is consistent with its ecological niche within the gastric environment. The unique spiral morphology of H. pylori is thought to facilitate its motility through the viscous mucus lining of the stomach, potentially enhancing its ability to colonize and persist in this hostile environment.↵↵The specific traits of PZ5004 may contribute to its survival and adaptability within the varied microenvironments of the gastric niche, offering insights into the evolutionary mechanisms that allow H. pylori to thrive in such a competitive and dynamic ecosystem. Understanding these traits may provide a clearer picture of the ecological role H. pylori plays in relation to its host and its potential interactions with other microbial communities present in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1337390 ASZF00000000.1 Bac0005879 Helicobacter pylori PZ5026 "Helicobacter pylori PZ5026 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at 37.0°C, which aligns with the typical human body temperature, indicating a close association with host organisms. H. pylori is predominantly found in the gastric mucosa of its host, suggesting a niche adaptation that allows it to survive in the acidic environment of the stomach while utilizing the limited oxygen levels present in this habitat.↵↵Microaerophilic organisms like H. pylori require reduced oxygen concentrations to grow, which influences their metabolic activities and interactions within the gastric ecosystem. The unique morphology of PZ5026, as a spirilla, may facilitate motility through viscous environments, enhancing its ability to colonize and persist in the gastric niche. This adaptation is critical for establishing and maintaining its presence in host-associated habitats.↵↵Additionally, the specific traits of H. pylori PZ5026 may provide insights into its ecological role within the human microbiome, particularly in relation to its interactions with other gastric flora and its potential influence on gastric health. Understanding these dynamics can contribute to broader knowledge regarding host-microbe interactions and the implications of H. pylori in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1337392 ASYT00000000.1 Bac0005880 Helicobacter pylori PZ5056 "Helicobacter pylori PZ5056 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and occurrence as single cells. This organism thrives optimally at 37.0°C, indicating its adaptation to the physiological conditions of its host, likely reflecting its association with the human stomach environment. ↵↵H. pylori is known for its unique ability to survive in the acidic gastric milieu, which is a significant aspect of its ecological niche. The microaerophilic nature of H. pylori PZ5056 suggests that it requires a reduced oxygen concentration for optimal growth, a trait that further emphasizes its specialization for life within the host's stomach, where oxygen levels are limited. ↵↵The study of H. pylori PZ5056 could provide insights into the complex interactions between this microbe and its host, contributing to our understanding of gastric microbiota and their role in health and disease. Notably, the preference for a microaerophilic environment hints at potential metabolic pathways that are adapted to low oxygen conditions, which may influence the overall microbial ecology of the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1337393 ASYU00000000.1 Bac0005881 Helicobacter pylori PZ5086 "Helicobacter pylori PZ5086 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism optimally thrives at a temperature of 37.0°C, which aligns with its adaptation to a warm-blooded host environment. Helicobacter pylori is primarily associated with the gastric mucosa of various hosts, suggesting a specialized niche within the host's gastrointestinal tract.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with its habitat, where oxygen concentrations are typically lower than in the external environment. This adaptation may play a crucial role in the bacterium's survival and colonization within the acidic gastric environment, where it can evade the host's immune responses.↵↵Research on Helicobacter pylori has highlighted its unique ecological interactions within the host, particularly in relation to the host's microbiome and digestive processes. By occupying the gastric niche, H. pylori may influence the overall microbial diversity and function of the gastrointestinal tract, potentially impacting host health. Understanding the traits of H. pylori PZ5086 can provide insights into the complexities of host-associated microbial communities and their implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1337395 ASYW00000000.1 Bac0005882 Sporomusa sphaeroides DSM 2875 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporomusa Sporomusa sphaeroides anaerobic 1337886 NZ_CP146991.1 Bac0005883 Geobacillus kaustophilus GBlys Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus kaustophilus 1337888 BASG00000000.1 Bac0005884 Calothrix sp. 336/3 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. 336/3 1337936 NZ_CP011382.1 Bac0005885 Elizabethkingia anophelis NUHP1 "Elizabethkingia anophelis NUHP1 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits aerobic metabolism as a chemoheterotroph. This organism is notable for its ability to thrive in multiple habitats, suggesting a degree of ecological versatility and adaptability. As a member of the genus Elizabethkingia, which is characterized by its unique physiological traits, E. anophelis NUHP1 contributes to the diversity of microbial life in various environments.↵↵The aerobic nature of this bacterium indicates its reliance on oxygen for growth, a trait that may influence its distribution in environments where oxygen availability fluctuates. Additionally, as a chemoheterotroph, E. anophelis NUHP1 utilizes organic compounds as a source of carbon and energy, which may play a role in nutrient cycling within its habitats.↵↵Understanding the ecological implications of E. anophelis NUHP1's metabolic capabilities could provide insights into its interactions with other microbial communities and its role in environmental processes. The adaptability of this bacterium to multiple habitats also raises questions about its potential resilience to changing environmental conditions, making it an interesting subject for further investigation in microbial ecology." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia anophelis Negative Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1338011 NZ_CP007547.1 Bac0005886 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 "Vibrio parahaemolyticus O1:Kuk str. FDA_R31 is a Gram-negative, rod-shaped bacterium that typically exists as single cells in aquatic environments. This organism is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor conditions. Its heterotrophic nature indicates that it derives energy by consuming organic compounds, which is consistent with its habitat in diverse aquatic ecosystems.↵↵The optimal growth temperature for V. parahaemolyticus O1:Kuk str. FDA_R31 is approximately 20.0°C, suggesting a preference for temperate aquatic environments where such temperatures are common. As a member of the Vibrio genus, this strain may exhibit typical characteristics associated with this group, including a potential for survival in various salinity levels and adaptability to fluctuating environmental conditions.↵↵Given its aquatic habitat and metabolic capabilities, V. parahaemolyticus O1:Kuk str. FDA_R31 may play a significant role in the microbial dynamics of marine and estuarine ecosystems. Its ability to thrive under varying oxygen conditions could also indicate its importance in nutrient cycling and organic matter decomposition in these environments. This versatility emphasizes the ecological significance of Vibrio species in aquatic microbiomes, particularly in terms of their contributions to microbial diversity and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 1338034 NC_021821.1 Bac0005887 Paenibacillus lentus str. DSM 25539 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus lentus 1338368 NZ_CP034248.1 Bac0005888 Sinomonas humi str. MUSC 117 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Sinomonas Sinomonas humi 1338436 JTDL00000000.1 Bac0005889 Enterococcus faecalis 918 "Enterococcus faecalis 918 is a Gram-positive, cocci-shaped bacterium that thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism. As a chemoorganotroph, it derives its energy from organic compounds, allowing it to adapt to various environmental conditions. This versatility in energy source utilization contributes to its capacity to inhabit multiple habitats, including the gastrointestinal tracts of humans and animals, as well as various environmental niches.↵↵The facultative anaerobic nature of E. faecalis 918 enables it to grow in both aerobic and anaerobic environments, further supporting its widespread presence. This adaptability is crucial for survival in fluctuating conditions, such as those encountered in the human microbiome, where oxygen levels can vary significantly. ↵↵Given its ability to thrive in diverse environments and utilize organic matter for energy, E. faecalis 918 may play a role in nutrient cycling within its habitats, contributing to the breakdown of organic materials and influencing the microbial community dynamics. Understanding the ecological roles of such microbes is essential for comprehending their interactions within complex ecosystems, particularly in relation to human health and environmental sustainability." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1338519 AVNY00000000.1 Bac0005890 Pseudomonas sp. JY-Q Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. JY-Q 1338689 NZ_CP011525.1 Bac0005891 Leuconostoc pseudomesenteroides PS12 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc pseudomesenteroides 1339247 JDVA00000000.1 Bac0005892 Dehalobacter sp. UNSWDHB Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Dehalobacter Dehalobacter sp. UNSWDHB 1339256 AUUR00000000.1 Bac0005893 Bacteroides fragilis str. 3397 T10 "Bacteroides fragilis str. 3397 T10 is a Gram-negative, rod-shaped bacterium typically found in a single-cell arrangement. This strain is a chemoorganotroph that thrives in anaerobic environments, indicating its reliance on organic compounds for energy in the absence of oxygen. The optimal growth temperature for B. fragilis str. 3397 T10 is approximately 37.0°C, which aligns with the physiological conditions of its host-associated habitat.↵↵As a member of the Bacteroides genus, this strain is commonly found in the gastrointestinal tract of humans and other animals, playing a critical role in the digestion of complex carbohydrates and maintaining gut homeostasis. The anaerobic nature of B. fragilis str. 3397 T10 suggests its adaptation to environments where oxygen is limited, such as within the dense microbial communities of the gut lumen. ↵↵Understanding the traits of Bacteroides fragilis str. 3397 T10 contributes to our knowledge of gut microbiota dynamics and the interactions between host and microbial communities. The ability of this strain to utilize a variety of organic substrates not only highlights its metabolic versatility but also underscores its potential role in nutrient cycling within host-associated ecosystems. These traits may offer insights into the broader implications of gut microbiota in health and disease, as well as the importance of anaerobic bacteria in various biological processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339284 JGCP00000000.1 Bac0005894 Bacteroides fragilis str. 3783N1-6 "Bacteroides fragilis strain 3783N1-6 is a Gram-negative, rod-shaped bacterium that typically exists in single-cell arrangements and is classified as an anaerobic chemoorganotroph. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological temperature of the host organisms it associates with. ↵↵Bacteroides fragilis is well-documented for its role within the gastrointestinal microbiota, contributing to the breakdown of complex carbohydrates and facilitating nutrient absorption through fermentation processes. Its anaerobic metabolism allows it to occupy niches within the host that are devoid of oxygen, which is crucial for maintaining homeostasis in the gut environment. ↵↵The association of Bacteroides fragilis strain 3783N1-6 with host organisms highlights its potential role in symbiotic relationships, where it may contribute to the immune system's modulation and the overall health of the host. Given the strain's specific traits, further exploration of its metabolic pathways and interactions within the microbial community could provide insights into its functional contributions to host physiology and microbial ecosystem dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339310 JGEU00000000.1 Bac0005895 Bacteroides fragilis str. 3976T8 "Bacteroides fragilis strain 3976T8 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobe, thriving optimally at a temperature of 37.0°C. This strain is a chemoorganotroph, indicating that it derives energy from organic compounds, which is consistent with its habitat as a host-associated microbe. ↵↵Bacteroides fragilis is known to inhabit the gastrointestinal tract of various hosts, where it plays a significant role in the complex microbial ecosystem. Its adaptation to anaerobic conditions suggests that it participates in fermentation processes, contributing to the breakdown of complex polysaccharides into simpler compounds that can be utilized by both the bacterium and its host. ↵↵The presence of Bacteroides fragilis strain 3976T8 in the gut microbiome underscores its potential involvement in nutrient metabolism and maintenance of gut health. By processing dietary fibers and producing short-chain fatty acids, this strain may help modulate host immune responses and maintain intestinal homeostasis. Further exploration of this strain's metabolic pathways could provide insights into its specific contributions to host nutrition and health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339314 JGDS00000000.1 Bac0005896 Phocaeicola vulgatus str. 3975 RP4 "Phocaeicola vulgatus str. 3975 RP4 is a Gram-positive, rod-shaped bacterium that predominantly occurs in a single-cell arrangement. This strain is classified as an anaerobe, indicating its growth in environments devoid of oxygen, which is characteristic of its habitat associated with host organisms. The anaerobic nature of P. vulgatus str. 3975 RP4 suggests a specialized adaptation to the microenvironments within host-associated niches, where oxygen levels are minimal or absent.↵↵As a member of the genus Phocaeicola, this bacterium likely plays a role in the complex microbial communities found in the gastrointestinal tracts of various hosts, contributing to the overall microbiome composition. The ability to thrive in anaerobic conditions may provide P. vulgatus str. 3975 RP4 with a competitive advantage in these environments, allowing it to engage in metabolic processes that are not reliant on oxygen. ↵↵The presence of P. vulgatus str. 3975 RP4 in host-associated habitats could indicate its involvement in nutrient cycling or symbiotic relationships, although the specific interactions and contributions to host physiology remain to be elucidated. The study of this strain may provide insights into the functional roles of anaerobic bacteria within host-associated ecosystems and their potential influence on host health and disease dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 1339352 JNHM00000000.1 Bac0005897 Limosilactobacillus reuteri I5007 "Limosilactobacillus reuteri I5007 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism. This microbe has been isolated from various habitats, indicating its adaptability to different environments. The ability to thrive under both aerobic and anaerobic conditions suggests a versatile metabolic capacity, allowing it to utilize a range of substrates for energy production.↵↵As a member of the Lactobacillaceae family, L. reuteri I5007 is likely involved in fermentation processes, which may contribute to its ecological roles in diverse niches, including the gastrointestinal tracts of animals and potentially in fermented food products. The presence of this strain in multiple habitats can be attributed to its resilience and ability to adapt to changing environmental conditions.↵↵Unique to L. reuteri species is the production of reuterin, a broad-spectrum antimicrobial compound that may provide ecological advantages by inhibiting the growth of competing microorganisms. This trait highlights the potential significance of L. reuteri I5007 in microbial community dynamics and its possible applications in food preservation and health-related interventions. Overall, the adaptability and metabolic versatility of Limosilactobacillus reuteri I5007 underscore its important ecological role in diverse microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1340495 NC_021496.1 Bac0005898 Streptococcus suis T15 "Streptococcus suis T15 is a Gram-positive coccus that typically exhibits a cellular arrangement in chains, pairs, or as single cells. This bacterium thrives at an optimal temperature of 37.0°C, which aligns with the body temperature of its host, suggesting a potential adaptation to a warm-blooded environment. As a facultative anaerobe, S. suis T15 can grow in both aerobic and anaerobic conditions, allowing it to occupy a variety of niches within its specialized habitat.↵↵The specific ecological role of Streptococcus suis T15 within its environment remains to be fully elucidated; however, its ability to thrive in varying oxygen conditions may provide it with a competitive advantage in diverse microbial communities. The arrangement of cells in chains and pairs may facilitate interactions with other organisms or host tissues, potentially influencing its ecological dynamics. Understanding these traits can offer insights into the adaptive mechanisms of S. suis T15 and its interactions within its ecosystem." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1340847 NC_022665.1 Bac0005899 Hominimerdicola alba SY3 "Hominimerdicola alba SY3 is a Gram-positive, nonsporulating coccus that is classified as an anaerobic bacterium, primarily found in host-associated habitats. This microbe displays a spherical morphology typical of cocci, contributing to its classification within the broader group of cocci-shaped bacteria. The anaerobic nature of H. alba SY3 suggests that it thrives in environments where oxygen is limited, which is often characteristic of certain niches within host organisms, such as the gastrointestinal tract.↵↵The nonsporulating trait of H. alba SY3 indicates that it does not form spores, a feature that can influence its survival strategies and ecological interactions. As an anaerobe, it may play a role in the microbial communities of its host, potentially participating in metabolic processes that are essential for the host's health and homeostasis.↵↵Given its specific habitat and metabolic characteristics, Hominimerdicola alba SY3 may contribute to the complex interplay of microbial life in anaerobic environments, possibly influencing nutrient cycling and the overall microbial ecology within its host. Further research into its interactions and contributions within these systems could provide insights into its functional role and significance in host-associated microbiomes." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Hominimerdicola Hominimerdicola alba Positive Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1341156 JEOB00000000.1 Bac0005900 Ruminococcus flavefaciens 007c Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus flavefaciens 1341157 ATAX00000000.1 Bac0005901 Flavobacterium limnosediminis JC2902 "Flavobacterium limnosediminis JC2902 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This organism is characterized by its ability to thrive in oxygen-rich environments, which is consistent with its classification within the genus Flavobacterium. Members of this genus are typically known for their diverse metabolic capabilities and their role in the degradation of organic matter.↵↵The morphological attributes of F. limnosediminis JC2902, specifically its rod shape, may confer advantages in nutrient acquisition and biofilm formation, potentially aiding its survival in competitive microbial communities. As an aerobic bacterium, it likely contributes to the biogeochemical cycling of carbon and nitrogen in its environment, utilizing oxygen as a terminal electron acceptor during respiration.↵↵While specific ecological roles for F. limnosediminis JC2902 remain to be thoroughly explored, its affiliation with the Flavobacteriaceae family suggests it may play a significant role in the decomposition of organic materials within aquatic systems. The organism's presence in such environments could indicate its involvement in nutrient cycling processes, which are essential for maintaining ecosystem health. Further studies may elucidate its specific interactions with other microorganisms and its overall impact on the dynamics of its habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium limnosediminis Gram-negative rod non-motile aerobic 1341181 AVGG00000000.1 Bac0005902 Yersinia wautersii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia wautersii 1341643 CVMG00000000.1 Bac0005903 Clostridium autoethanogenum DSM 10061 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium autoethanogenum 1341692 NC_022592.1 Bac0005904 Sulfitobacter geojensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter geojensis 1342299 LXYM00000000.1 Bac0005905 Limimaricola soesokkakensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Limimaricola Limimaricola soesokkakensis 1343159 FWFY00000000.1 Bac0005906 Palaeococcus pacificus DY20341 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Palaeococcus Palaeococcus pacificus 1343739 NZ_CP006019.1 Bac0005907 Streptomyces rapamycinicus NRRL 5491 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rapamycinicus 29 mesophilic spore-forming 1343740 QYCY00000000.1 Bac0005908 Salinimicrobium sediminis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salinimicrobium Salinimicrobium sediminis 1343891 OCMF00000000.1 Bac0005909 Archaeoglobus fulgidus DSM 8774 "Archaeoglobus fulgidus DSM 8774 is a coccoid archaeon that thrives in aquatic environments, exhibiting an optimal growth temperature of approximately 83.0°C. This extremophilic microbe is classified as an anaerobe, indicating that it relies on the absence of oxygen for its metabolic processes. ↵↵The morphology of A. fulgidus, characterized by its spherical shape, is well-adapted to its high-temperature aquatic habitats, which are often found in geothermal environments such as hot springs and hydrothermal vents. The ability of this archaeon to grow optimally at such elevated temperatures suggests the presence of specialized cellular mechanisms that stabilize its proteins and cellular structures, allowing it to function effectively in extreme thermal conditions.↵↵Given its anaerobic nature, A. fulgidus likely engages in metabolic processes such as sulfate reduction or the utilization of alternative electron acceptors, contributing to biogeochemical cycles in its habitat. The unique adaptations of A. fulgidus not only facilitate its survival in extreme environments but also underscore the significance of extremophiles in understanding microbial diversity and the limits of life on Earth. Further exploration of this archaeon's metabolic pathways may provide insights into its role in nutrient cycling and its potential applications in biotechnology." Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus NA Cocci Yes 1 1 Anaerobe 83 Hyperthermophilic Aquatic 1344584 NZ_CP006577.1 Bac0005910 Microbacterium sp. TS-1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. TS-1 1344956 BASQ00000000.1 Bac0005911 Exiguobacterium chiriqhucha RW-2 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium chiriqhucha 1345023 ATCL00000000.1 Bac0005912 Clostridium saccharobutylicum DSM 13864 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium saccharobutylicum anaerobic 1345695 NC_022571.1 Bac0005913 Indolivaga macrotermitis Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Indolivaga Indolivaga macrotermitis 1346286 FQUC00000000.1 Bac0005914 Halomonas sp. A3H3 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. A3H3 1346287 NZ_HG423344.1 Bac0005915 Sphingobium ummariense RL-3 "Sphingobium ummariense RL-3 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is categorized as non-spore-forming, which indicates its reliance on favorable environmental conditions for survival and reproduction rather than the formation of resilient spores.↵↵The Gram-negative classification of S. ummariense RL-3 suggests a complex cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in various ecological niches, such as resistance to certain antibiotics and the ability to thrive in diverse environments. The aerobic nature of this organism points to its dependence on oxygen for metabolic processes, potentially influencing its habitat selection and interactions within microbial communities.↵↵The optimal growth temperature of 29.0°C positions S. ummariense RL-3 within a mesophilic range, suggesting a potential preference for environments that maintain moderate temperatures. This characteristic can be significant in understanding its ecological role, particularly in terrestrial or aquatic ecosystems where temperature fluctuations occur.↵↵In summary, the combination of these traits indicates that Sphingobium ummariense RL-3 may play a crucial role in the degradation of organic materials in oxygen-rich environments, contributing to nutrient cycling and the maintenance of ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium ummariense Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1346791 AUWY00000000.1 Bac0005916 Prevotella intermedia ZT "Prevotella intermedia ZT is a Gram-negative, rod-shaped bacterium primarily found in the oral cavity. As an anaerobic organism, it thrives in environments devoid of oxygen, which is characteristic of the microenvironments within the oral ecosystem. This bacterium is part of the complex community of oral microbiota and plays a role in various microbial interactions within this habitat.↵↵Prevotella intermedia ZT is known to exhibit metabolic versatility, allowing it to utilize a range of nutrients available in the oral cavity. Its ability to survive and proliferate in anaerobic conditions suggests it may contribute to the maintenance of microbial homeostasis in the oral environment. Furthermore, its presence may be linked to the dynamics of oral health and disease, as the balance of microbial populations in the mouth can influence overall oral health.↵↵The unique ecological insight regarding Prevotella intermedia ZT lies in its potential role in the oral microbiome's response to changes in local conditions, such as shifts in pH or the presence of dietary components. Understanding the specific interactions and contributions of this bacterium within the oral cavity could provide valuable information on its significance in oral health and disease processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe oral cavity 1347790 ATMK00000000.1 Bac0005917 Lyngbya aestuarii BL J Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Lyngbya Lyngbya aestuarii 1348334 AUZM00000000.1 Bac0005918 Pseudoalteromonas sp. H105 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. H105 1348393 LOFH00000000.1 Bac0005919 Priestia megaterium NBRC 15308 = ATCC 14581 "Priestia megaterium NBRC 15308 (formerly ATCC 14581) is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive in aerobic conditions. This microbe exhibits a remarkable versatility in habitat, indicating its capacity to adapt to diverse environmental conditions. The sporulation capability suggests a strategic response to unfavorable conditions, allowing P. megaterium to endure periods of stress and resource limitation.↵↵As an aerobic organism, P. megaterium requires oxygen for growth, which aligns with its presence in habitats where oxygen is readily available. Its morphological and physiological traits contribute to its role in various ecological niches, although specific ecological relationships or interactions were not detailed in the provided information. ↵↵Notably, the ability to form spores not only aids in survival but may also facilitate dispersal in fluctuating environments, potentially aiding in the colonization of new habitats. This characteristic highlights the ecological significance of P. megaterium in microbial communities where resilience and adaptability are essential for survival in dynamic ecosystems. Further research may elucidate its specific roles in biogeochemical cycles or its interactions with other microorganisms in various habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1348623 NZ_CP035095.1 Bac0005920 Thauera terpenica 58Eu Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera terpenica 1348657 ATJV00000000.1 Bac0005921 Serratia plymuthica S13 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia plymuthica 1348660 NC_021659.1 Bac0005922 Croceicoccus naphthovorans str. PQ-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Croceicoccus Croceicoccus naphthovorans 1348774 NZ_CP011770.1 Bac0005923 Mumia flava str. DSM 27763 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Mumia Mumia flava 1348852 PGEZ00000000.1 Bac0005924 Flavihumibacter solisilvae str. 3-3 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavihumibacter Flavihumibacter solisilvae 1349421 JSVC00000000.1 Bac0005925 Tenacibaculum maritimum NCIMB 2154 "Tenacibaculum maritimum NCIMB 2154 is a Gram-negative, rod-shaped bacterium notable for its aquatic habitat. This microbe is characterized by its slender, elongated morphology, which is typical of the genus Tenacibaculum. As a member of this genus, T. maritimum is adapted to marine environments, where it likely plays a role in the microbial community associated with aquatic ecosystems.↵↵The Gram-negative nature of T. maritimum implies the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interaction with other microorganisms and its resilience in marine conditions. This structural characteristic is often associated with a range of physiological traits, including resistance to certain antibiotics and an ability to thrive in diverse environmental conditions.↵↵The ecological significance of Tenacibaculum maritimum NCIMB 2154 likely extends to its role in nutrient cycling within marine ecosystems. Its rod-shaped morphology may facilitate motility and colonization of surfaces, while contributing to the degradation of organic materials in its environment. Further investigations into the specific metabolic pathways and interactions of this bacterium could illuminate its contributions to marine ecological processes and its potential significance in maintaining the health of aquatic habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum maritimum Gram-negative rod motile 1349785 NZ_LT634361.1 Bac0005926 Aureimonas sp. AU20 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas sp. AU20 1349819 NZ_CP006371.1 Bac0005927 Cellulosimicrobium cellulans F16 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium cellulans 1350482 ATNL00000000.1 Bac0005928 Neisseria gonorrhoeae MIA_2011_03-10 "Neisseria gonorrhoeae MIA_2011_03-10 is a Gram-negative, coccoid bacterium that typically exists in singles or pairs. This microbe is an obligate aerobe, thriving in oxygen-rich environments, with an optimal growth temperature of 35.0°C. N. gonorrhoeae is known to inhabit host-associated environments, indicating a close relationship with its host organisms. ↵↵As a member of the genus Neisseria, this strain shares characteristics common to pathogenic species, although specific pathogenic potential details are not provided in the available traits. The coccoid morphology and arrangement in singles and pairs suggest a potential for specific interactions within host tissues, likely influenced by its habitat. ↵↵This strain's optimal temperature of 35.0°C aligns with the human body temperature, which may facilitate its survival and proliferation in the host. Understanding the growth conditions and environmental adaptations of N. gonorrhoeae MIA_2011_03-10 contributes to the broader knowledge of its ecological niche, particularly its reliance on aerobic conditions and host-associated habitats for sustenance and reproduction. Further studies into its behavior in host environments could provide insights into its ecological role and interactions with human microbiomes." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 1351790 ATQO00000000.1 Bac0005929 Helicobacter pylori UM085 "Helicobacter pylori UM085 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37°C, aligning with the typical thermal conditions found in the gastric environment of its hosts. H. pylori UM085 is primarily associated with host organisms, suggesting a specialized niche within the gastrointestinal tract where it may engage in complex interactions with the host's immune system and microbiota.↵↵The microaerophilic nature of H. pylori UM085 indicates that it requires reduced levels of oxygen for growth, which is consistent with its habitat in the stomach, where oxygen concentrations are lower than in the atmosphere. This adaptation not only facilitates its survival in a challenging environment but also highlights the potential for symbiotic or pathogenic relationships with its host. ↵↵Given its specific habitat and growth requirements, H. pylori UM085 may play a significant role in shaping the microbial community of the gastric microbiome, potentially influencing digestive health and disease states. Further research into its ecological interactions could provide valuable insights into the dynamics of host-associated microbial communities and their impact on gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1352344 AUSP00000000.1 Bac0005930 Helicobacter pylori UM111 "Helicobacter pylori UM111 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape (spirilla) and single-cell arrangement. This organism thrives optimally at 37.0°C, which aligns closely with the physiological temperature of its host, suggesting a specialized adaptation to life within the gastric environment. ↵↵Helicobacter pylori UM111 is primarily host-associated, indicating that it resides within the gastrointestinal tract of its host, where it is known to colonize the gastric mucosa. The microaerophilic nature of this bacterium implies that it requires reduced oxygen levels for optimal growth, which is characteristic of many organisms found in the stomach, where oxygen concentration is limited.↵↵The unique spiral morphology of Helicobacter pylori UM111 may facilitate motility through the viscous gastric mucus, allowing it to penetrate the mucosal layer and establish a niche within the stomach's acidic environment. This motility, combined with its adaptation to microaerophilic conditions, underscores the bacterium's potential role in shaping gastric microbiota and influencing the local immune response. Understanding the ecological dynamics of Helicobacter pylori UM111 within its host could provide insights into its interactions with other microbial species present in the gastric niche, as well as its impact on gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1352345 AUSR00000000.1 Bac0005931 Helicobacter pylori UM077 "Helicobacter pylori UM077 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This species thrives optimally at 37.0°C, which aligns with the body temperature of its natural host, suggesting a specialized adaptation for survival in a host-associated environment. H. pylori UM077's microaerophilic nature indicates that it requires reduced oxygen levels for growth, which is typically found in the gastric mucosa of mammals.↵↵The spiral morphology of H. pylori UM077 is thought to facilitate its motility in the viscous gastric environment, allowing it to navigate through mucus layers and colonize the stomach lining. The bacterium's association with host tissues indicates a close relationship with its environment, underscoring its potential role in influencing host gastric physiology. ↵↵Given its habitat and growth requirements, H. pylori UM077 may contribute to the complex microbial community within the gastrointestinal tract, potentially impacting nutrient absorption and host immune responses. This interplay between the bacterium and its host environment highlights the significance of H. pylori UM077 in studies of microbial ecology and host-microbe interactions, particularly within the context of gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1352346 AUSQ00000000.1 Bac0005932 Streptomyces roseochromogenus subsp. oscitans DS 12.976 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces roseochromogenus 1352936 NZ_CM002285.1 Bac0005933 Streptomyces niveus NCIMB 11891 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces niveus 1352941 NZ_CM002282.1 Bac0005934 Candidatus Nitrosocosmicus oleophilus str. MY3 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus 1353260 NZ_CP012850.1 Bac0005935 Bacteriovorax sp. BSW11_IV Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. BSW11_IV 1353529 AUNE00000000.1 Bac0005936 Pseudoalteromonas luteoviolacea 2ta16 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 1353533 AUSV00000000.1 Bac0005937 Clostridium ragsdalei P11 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium ragsdalei 1353534 LROS00000000.1 Bac0005938 Shewanella decolorationis S12 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella decolorationis 1353536 AXZL00000000.1 Bac0005939 Thioclava pacifica DSM 10166 "Thioclava pacifica DSM 10166 is a Gram-negative, rod-shaped bacterium that exhibits strict aerobic metabolism, thriving optimally at 37.0 °C. This organism is characterized by its distinct morphological and physiological traits, which classify it within a specific ecological niche in marine environments. ↵↵As a Gram-negative bacterium, Thioclava pacifica possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various environmental conditions. The rod shape is indicative of its cellular structure, potentially facilitating motility and nutrient uptake in its aquatic habitat. The aerobic requirement suggests that Thioclava pacifica relies on oxygen for its metabolic processes, which may influence its distribution in oxygen-rich environments, such as marine sediments or water columns.↵↵Understanding the optimal growth temperature of 37.0 °C is essential, as it indicates the microbe's preference for moderately warm conditions, possibly aligning with the thermal profiles of its native marine habitats. This temperature preference may also suggest potential adaptations to specific ecological niches where temperature dynamics are critical.↵↵In summary, Thioclava pacifica DSM 10166 exemplifies a specialized adaptation to aerobic environments, potentially playing a role in biogeochemical cycles within marine ecosystems, especially concerning sulfur metabolism, given its genus association. This insight underscores the importance of such microorganisms in maintaining ecological balance and nutrient cycling in their habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava pacifica Gram-negative rod aerobic 37 mesophilic 1353537 AUND00000000.1 Bac0005940 Caballeronia cordobensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia cordobensis 1353886 FCNY00000000.2 Bac0005941 Neochlamydia sp. S13 Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. S13 1353976 NZ_AP017977.1 Bac0005942 Buttiauxella brennerae ATCC 51605 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella brennerae aerobic 1354251 LXER00000000.1 Bac0005943 Buttiauxella gaviniae ATCC 51604 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella gaviniae aerobic 1354253 LXEP00000000.1 Bac0005944 Enterobacter soli ATCC BAA-2102 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter soli aerobic 1354262 LXES00000000.1 Bac0005945 Providencia heimbachae ATCC 35613 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia heimbachae 1354272 LXEW00000000.1 Bac0005946 Psychrobacter aquaticus CMS 56 "Psychrobacter aquaticus CMS 56 is a Gram-negative, spherical bacterium that thrives at an optimal temperature of 16.0 °C and exhibits aerobic respiration. This psychrotolerant organism is well-adapted to cold environments, which aligns with its classification in the genus Psychrobacter, known for its ability to grow at low temperatures.↵↵The spherical morphology of Psychrobacter aquaticus CMS 56 suggests a potential adaptability to various environmental conditions, facilitating its survival in diverse aquatic habitats. Its aerobic nature indicates a reliance on oxygen for growth and metabolism, which may influence its ecological role in nutrient cycling within cold marine environments.↵↵The adaptation of Psychrobacter aquaticus CMS 56 to lower temperatures may provide insights into the metabolic processes of microorganisms in polar and deep-sea ecosystems, where temperatures often fall below 20 °C. As such, this bacterium could play a significant role in the degradation of organic matter and the cycling of carbon in these cold habitats, contributing to the overall functioning of microbial communities in extreme environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter aquaticus Gram-negative sphere non-motile aerobic 16 psychrotolerant 1354303 AUSW00000000.1 Bac0005947 Streptomyces sp. MUSC 14 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MUSC 14 1354889 MLYN00000000.1 Bac0005948 Streptomyces pluripotens str. MUSC 137 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces pluripotens 1355015 NZ_CP022433.1 Bac0005949 Flavobacterium faecale str. WV33 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium faecale 1355330 NZ_CP020918.1 Bac0005950 Bradyrhizobium diazoefficiens "Bradyrhizobium diazoefficiens is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This microbe is notable for its symbiotic relationship with leguminous plants, where it forms nodules on the roots, facilitating nitrogen fixation. This process is crucial for enriching soil fertility, making B. diazoefficiens an important player in sustainable agriculture.↵↵The rod shape of B. diazoefficiens is characteristic of many bacteria in its family, allowing for effective motility and colonization. As an aerobic organism, it requires oxygen for its metabolic processes, which aligns with its ecological niche within root nodules, where oxygen levels can be regulated by the host plant. ↵↵The optimal growth temperature of 29.0°C suggests that B. diazoefficiens is well adapted to temperate climates, which is significant for agricultural practices in those regions. Its ability to thrive in such conditions underscores its potential as a biofertilizer in crop production systems.↵↵Furthermore, the symbiotic relationship between B. diazoefficiens and legumes not only aids in nitrogen fixation but also demonstrates a complex interaction between microorganisms and plants that enhances nutrient cycling in ecosystems. This interaction is an essential component of sustainable agriculture, as it reduces the need for synthetic fertilizers and promotes biodiversity within the soil microbiome." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium diazoefficiens Gram-negative rod aerobic 29 mesophilic 1355477 NWTE00000000.1 Bac0005951 Helicobacter pylori UM065 "Helicobacter pylori UM065 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, indicating a strong adaptation to the human body, where it is predominantly found in association with the gastric environment. ↵↵As a member of the Helicobacter genus, H. pylori UM065 is likely to exhibit the metabolic versatility typical of its relatives, utilizing the limited oxygen concentrations found in the stomach to facilitate its growth and survival. The microaerophilic nature of this strain suggests that it has evolved to occupy niches within the host that provide a specific range of oxygen levels, which are crucial for its metabolic processes.↵↵The habitat of H. pylori UM065, being host-associated, reflects its specialized role in the microbial community of the gastric mucosa, where it may interact with the host's immune system and other microbial inhabitants. Understanding the specific adaptations of this strain could provide insights into its ecological role within the gastric microbiome, as well as its potential contributions to host health or disease dynamics. Further investigation into its interactions and behaviors in the stomach environment may illuminate the complexities of host-microbe relationships in gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1355528 AUSM00000000.1 Bac0005952 Helicobacter pylori UM114 "Helicobacter pylori UM114 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and presence as single cells. This species thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated environments, specifically within the gastric mucosa of mammals. ↵↵As a member of the Helicobacter genus, H. pylori UM114 is noted for its unique morphological features that facilitate its survival in acidic conditions, typical of the stomach. The microaerophilic nature of this bacterium suggests that it requires reduced oxygen levels for optimal growth, a trait that may contribute to its persistence in the highly variable gastric environment where oxygen availability is limited.↵↵The ecological niche of H. pylori UM114 underscores its potential role in the complex microbial communities within the gastrointestinal tract. Its ability to adapt to the specific conditions of the host's stomach may influence not only its own survival but also the overall microbial balance in this habitat. Understanding the precise ecology and physiological traits of H. pylori UM114 could provide deeper insights into its interactions with the host and its potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1355531 AUSS00000000.1 Bac0005953 Ferrovum sp. PN-J185 Pseudomonadati Pseudomonadota Betaproteobacteria Ferrovales Ferrovaceae Ferrovum Ferrovum sp. PN-J185 1356306 LQZA00000000.1 Bac0005954 Hymenobacter sp. APR13 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. APR13 1356852 NZ_CP006587.1 Bac0005955 Alicyclobacillus acidoterrestris ATCC 49025 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus acidoterrestris 1356854 AURB00000000.1 Bac0005956 Staphylococcus sp. EGD-HP3 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp. EGD-HP3 1357269 AVOQ00000000.1 Bac0005957 Pseudomonas syringae CC1557 "Pseudomonas syringae CC1557 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolism, utilizing a heterotrophic lifestyle. This microbe thrives in a variety of habitats, showcasing its versatility and adaptability to different environmental conditions. As an aerobe, P. syringae CC1557 requires oxygen for its metabolic processes, which underscores its potential role in various ecological niches where oxygen is readily available.↵↵The heterotrophic nature of P. syringae CC1557 suggests that it plays a significant role in organic matter decomposition and nutrient cycling within its habitats. Its ability to thrive in diverse environments could contribute to its ecological impact, particularly in soil and plant-associated ecosystems. Understanding the characteristics and behaviors of this strain can provide valuable insights into the dynamics of microbial communities and their interactions with the environment. ↵↵Given its adaptability and metabolic capabilities, Pseudomonas syringae CC1557 may serve as a model organism for studying microbial processes in ecological research, particularly in the context of nutrient cycling and the role of bacteria in maintaining ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 1357279 NZ_CP007014.1 Bac0005958 Fusobacterium nucleatum 13_3C "Fusobacterium nucleatum 13_3C is a Gram-negative, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C, indicating its adaptation to host-associated environments. As an anaerobe, this microbe exclusively flourishes in oxygen-deprived conditions, which is typical for many members of the Fusobacterium genus that inhabit the oral cavity and gastrointestinal tract of various hosts.↵↵The nonsporulating nature of Fusobacterium nucleatum 13_3C suggests a reliance on stable, conducive environments for its survival, further emphasizing its association with host organisms. This trait can influence its ecological interactions, as the bacterium may be involved in complex microbial communities where it contributes to metabolic processes under anaerobic conditions. ↵↵The specific habitat preferences and growth characteristics of Fusobacterium nucleatum 13_3C highlight its potential role in maintaining the delicate balance of microbial ecosystems within the host. This balance is crucial, as disruptions can lead to dysbiosis, which is associated with various health issues. Understanding the traits of this bacterium can provide insights into its functional contributions to host-associated microbiomes and the implications for host health and disease." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1357398 JAOZ00000000.1 Bac0005959 Helicobacter canis NCTC 12740 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter canis microaerophile 1357399 AZJJ00000000.1 Bac0005960 Helicobacter macacae MIT 99-5501 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter macacae microaerophile 1357400 AZJI00000000.1 Bac0005961 Arthrobacter sp. QXT-31 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. QXT-31 1357915 NZ_CP019304.1 Bac0005962 Sinorhizobium sp. GL2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. GL2 1358416 AUTB00000000.1 Bac0005963 Pedobacter antarcticus 4BY Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter antarcticus 1358423 JNFF00000000.1 Bac0005964 Rickettsia amblyommatis str. Darkwater Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia amblyommatis 1359166 LAOH00000000.1 Bac0005965 Ehrlichia cf. muris str. EmCRT Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia muris 1359167 LANU00000000.1 Bac0005966 Thermofilum adornatum str. 1910b Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum adornatum 1365176 NC_022093.1 Bac0005967 Pseudoalteromonas luteoviolacea CPMOR-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 1365248 AUYC00000000.1 Bac0005968 Pseudoalteromonas luteoviolacea NCIMB 1942 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 1365253 AUXT00000000.1 Bac0005969 Helicobacter pylori UM023 "Helicobacter pylori UM023 is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This organism thrives optimally at 37.0°C, which is consistent with its habitat, as it is primarily associated with host environments. H. pylori UM023, like other members of its genus, is adapted to colonize the gastric mucosa of its host, where it plays a role in the complex interactions between the host’s immune system and the microbiome.↵↵The microaerophilic nature of H. pylori UM023 indicates that it requires reduced levels of oxygen for growth, which aligns with its adaptation to the oxygen-limited environment of the stomach. This trait is critical for its survival and proliferation within the gastric niche, where it can influence local pH levels and interact with gastric epithelial cells.↵↵An intriguing aspect of H. pylori UM023 is its potential to contribute to the unique microbial landscape of the human stomach, where it may influence digestive processes and host health. Understanding the specific traits of this strain can provide insights into its ecological role and the broader implications of Helicobacter species in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1365636 AUSK00000000.1 Bac0005970 Consotaella salsifontis "Consotaella salsifontis is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. This microbe demonstrates heterotrophic and chemotrophic modes of energy acquisition, utilizing organic compounds as carbon and energy sources. Optimal growth occurs at approximately 29.0°C, suggesting that Consotaella salsifontis may be well-adapted to environments with moderate temperatures.↵↵The Gram-negative cell wall structure of Consotaella salsifontis is indicative of its potential interactions within microbial communities, possibly influencing its ecological niche and metabolic pathways. The ability to function under both aerobic and anaerobic conditions further highlights its versatility in diverse habitats. This adaptability may allow Consotaella salsifontis to occupy various ecological niches, including environments where nutrient availability fluctuates, such as estuarine or coastal ecosystems.↵↵Overall, the unique combination of traits exhibited by Consotaella salsifontis points to its potential role as a significant player in biogeochemical cycles, particularly in the degradation of organic matter in its native habitat. This adaptability not only enhances its survival but also suggests a contribution to the microbial dynamics in nutrient cycling processes within its ecosystem." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Consotaella Consotaella salsifontis Gram-negative rod facultative aerobe/anaerobe 29 heterotroph; chemotroph mesophilic 1365950 FUXL00000000.1 Bac0005971 Bifidobacterium breve MCC 1128 "Bifidobacterium breve MCC 1128 is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium, which is commonly recognized for its role in the human gut microbiota. This microbe is characterized by its inability to survive in oxygen-rich environments, making it an obligate anaerobe. Bifidobacterium species, including B. breve MCC 1128, are often associated with beneficial health effects, particularly in infant and adult gut health, where they contribute to maintaining a balanced microbiome.↵↵As a member of the Bifidobacteriaceae family, B. breve MCC 1128 is likely to exhibit fermentative metabolism, utilizing carbohydrates as a primary energy source while producing short-chain fatty acids, such as acetate and lactate, which can be beneficial for gut health. These metabolic products may also play a role in modulating the host immune response and maintaining intestinal homeostasis.↵↵The specific strain MCC 1128 has been isolated for its potential probiotic properties, which may include the ability to inhibit pathogenic bacteria and enhance gut barrier functions. Given its anaerobic nature, Bifidobacterium breve MCC 1128 thrives in the gastrointestinal tract, where it may outcompete other microbial species for resources, thereby supporting overall microbial diversity. Further studies may elucidate its specific interactions within the gut environment and its contributions to host health and disease prevention." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe 1365965 AVQD00000000.1 Bac0005972 Bifidobacterium breve MCC 1454 "Bifidobacterium breve MCC 1454 is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium. This species is characterized by its ability to thrive in oxygen-free environments, making it well-adapted to the gastrointestinal tracts of humans and other mammals. B. breve MCC 1454 is recognized for its beneficial role in gut health, often associated with the modulation of gut microbiota and potential health-promoting effects.↵↵As an anaerobe, B. breve MCC 1454 relies on fermentation for energy production, utilizing carbohydrates as substrates to produce short-chain fatty acids (SCFAs), which are crucial for maintaining colonic health. The metabolic activities of this strain contribute to the overall balance of the gut microbiome, potentially inhibiting the growth of pathogenic microorganisms and promoting a favorable intestinal environment.↵↵B. breve species, including MCC 1454, are often studied for their probiotic properties, as they may enhance digestive health and support the immune system. Furthermore, the presence of Bifidobacterium species in the gut is typically associated with various health benefits, including improved lactose digestion and the modulation of inflammatory responses.↵↵Unique to Bifidobacterium breve MCC 1454 is its potential adaptability to different dietary conditions, which could influence its prevalence and functional capacity within various host environments. Understanding the specific mechanisms through which this strain interacts with gut microbiota may provide insights into its role in human health and disease prevention." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe 1365967 AWFU00000000.1 Bac0005973 Rhodobacteraceae bacterium HIMB11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium HIMB11 1366046 AVDB00000000.1 Bac0005974 Limosilactobacillus fermentum MTCC 8711 "Limosilactobacillus fermentum MTCC 8711 is a Gram-positive, rod-shaped bacterium that typically forms chains. This organism is classified as a facultative anaerobe, indicating its capability to grow in both the presence and absence of oxygen. L. fermentum MTCC 8711 is known to inhabit diverse environments, suggesting a versatile adaptability that may contribute to its survival across various ecological niches.↵↵The ability to thrive in multiple habitats points to the potential for L. fermentum MTCC 8711 to engage in different metabolic activities, depending on the available resources and environmental conditions. Its facultative anaerobic nature enables it to ferment carbohydrates in anaerobic conditions, which may play a significant role in its ecological interactions. This trait also underscores its relevance in the fermentation processes, particularly in food production and preservation. ↵↵Moreover, the chain arrangement observed in this species could enhance its efficiency in nutrient utilization and biofilm formation, potentially facilitating its colonization in diverse habitats. These characteristics may also render L. fermentum MTCC 8711 an important player in microbial communities, contributing to the balance of microbial interactions and metabolic exchanges within its environments. Hence, understanding the ecological roles of this species could provide insights into its applications in biotechnology and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1366052 AVAB00000000.1 Bac0005975 Bacillus infantis NRRL B-14911 "Bacillus infantis NRRL B-14911 is a Gram-positive, rod-shaped bacterium classified as a facultative anaerobe that thrives optimally at mesophilic temperatures. This versatile microorganism exhibits heterotrophic characteristics, relying on organic compounds for growth and energy. Bacillus infantis NRRL B-14911 is known to inhabit a variety of environments, including soil, and has been isolated from various sources, including fermented foods and the gastrointestinal tracts of animals, highlighting its ecological diversity. The Gram-positive nature of Bacillus infantis NRRL B-14911 indicates that it possesses a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and protective capabilities against environmental stressors. This characteristic is common among Bacillus species, enabling them to form spores that can withstand extreme conditions such as heat and desiccation. Its rod-shaped morphology is typical for bacteria in the Bacillus genus, which allows for efficient nutrient absorption and mobility. As a facultative anaerobe, Bacillus infantis NRRL B-14911 can adapt to both aerobic and anaerobic environments, switching its metabolic processes accordingly. This adaptability grants it a significant ecological advantage, allowing it to proliferate in diverse niches where oxygen availability fluctuates. Its heterotrophic nature indicates that the organism can metabolize organic materials, making it pivotal in various biogeochemical cycles. This particular strain has garnered attention in biotechnology and microbiome studies due to its potential probiotic properties. Research suggests that Bacillus infantis NRRL B-14911 may play a role in promoting gut health by outcompeting pathogenic microorganisms and enhancing the immune response, thereby contributing to the overall well-being of its host." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus infantis Positive Rod Aerobe 1367477 NC_022524.1 Bac0005976 Paracoccus aminophilus JCM 7686 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus aminophilus 1367847 NC_022049.1 Bac0005977 Izhakiella capsodis "Izhakiella capsodis is a Gram-negative, rod-shaped bacterium that demonstrates versatility in its metabolic processes, functioning as both a heterotroph and a chemotroph. This microbe exhibits an optimal growth temperature of 29.0 °C, indicating a preference for moderately warm environments. Its facultative aerobe/anaerobe classification suggests that Izhakiella capsodis can thrive in both the presence and absence of oxygen, allowing it to inhabit various ecological niches where oxygen levels may fluctuate.↵↵The ability to utilize multiple energy sources and adapt to different oxygen conditions may provide Izhakiella capsodis a competitive advantage in diverse habitats, potentially facilitating its survival in fluctuating environmental conditions. This adaptability may reflect a broader ecological role, possibly contributing to nutrient cycling in its environment. Understanding the physiological traits of Izhakiella capsodis can provide insights into its ecological interactions and potential applications in biotechnological processes, particularly in environments where organic substrates are abundant." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Izhakiella Izhakiella capsodis Gram-negative rod motile facultative aerobe/anaerobe 29 heterotroph; chemotroph mesophilic 1367852 FOVC00000000.1 Bac0005978 Bacillus licheniformis CG-B52 "Bacillus licheniformis CG-B52 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated habitats. As a facultative aerobe, this microbe can utilize oxygen for respiration when available, while also being capable of anaerobic metabolism, allowing it to adapt to varying environmental conditions. Its sporulating nature is indicative of its resilience, enabling it to survive adverse conditions by forming endospores, which can withstand extreme temperatures and desiccation.↵↵The host-associated habitat suggests that Bacillus licheniformis CG-B52 may have ecological roles linked to specific organisms or environments, possibly contributing to nutrient cycling or symbiotic relationships. The ability to sporulate and its facultative aerobic metabolism could provide competitive advantages in the complex microbiomes of host organisms, facilitating the bacterium's survival and proliferation under fluctuating oxygen levels and nutrient availability. This adaptability underscores the potential of Bacillus licheniformis CG-B52 as a model organism for studying microbial interactions within host-associated ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus licheniformis Positive Rod Yes 1 1 Facultative aerobe Mesophilic HostAssociated Free living Sporulating 1368424 NZ_AVEZ01000046.1 Bac0005979 Lysinibacillus halotolerans str. MCCC 1A12703 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus halotolerans 1368476 RHLQ00000000.1 Bac0005980 Enterobacter sp. CC120223-11 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. CC120223-11 1378073 OBEF00000000.1 Bac0005981 Pseudomonas sp. CC120222-01a Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. CC120222-01a 1378075 QEQQ00000000.1 Bac0005982 Rhizobium sp. UGM030330-04 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. UGM030330-04 1378077 QKML00000000.1 Bac0005983 Pantoea sp. GL120224-02 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. GL120224-02 1378084 OBEC00000000.1 Bac0005984 Dyella jiangningensis str. FCAV SCS01 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella jiangningensis 1379159 NFZS00000000.1 Bac0005985 Dyella jiangningensis str. SBZ 3-12 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella jiangningensis 1379159 NZ_CP007444.1 Bac0005986 candidate division Zixibacteria bacterium RBG-1 Pseudomonadati Candidatus Zixiibacteriota candidate division Zixibacteria bacterium RBG-1 1379698 AUYT00000000.1 Bac0005987 Clostridium botulinum B2 433 "Clostridium botulinum B2 433 is a Gram-positive, rod-shaped bacterium that typically exhibits a variety of cell arrangements, including pairs, singles, and chains. This strain is classified as an anaerobic chemoorganotroph, indicating its reliance on organic compounds for energy while thriving in oxygen-free environments. C. botulinum B2 433 prefers an optimal growth temperature of 37.0°C, which aligns with the physiological conditions found in many mammalian hosts.↵↵The habitat of C. botulinum B2 433 is diverse, suggesting a versatile ecological niche that may encompass various environments where anaerobic conditions prevail, including soil, sediments, and decaying organic matter. The ability to form chains, alongside its anaerobic lifestyle, may facilitate its survival and propagation in conditions where oxygen is limited, thus enhancing its competitive advantage in specific microbial communities.↵↵Further investigations into the ecological roles of Clostridium botulinum B2 433 could provide insights into its interactions within anaerobic ecosystems, particularly regarding nutrient cycling and the decomposition of organic materials. Understanding these dynamics may also shed light on the broader implications of this strain's presence in various habitats, contributing to our knowledge of microbial ecology and the functioning of anaerobic environments." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1379737 NZ_AUYZ01000011.1 Bac0005988 Clostridium botulinum B2 450 "Clostridium botulinum B2 450 is a Gram-positive, rod-shaped bacterium that typically appears in pairs, singles, or chains. This organism is a chemoorganotroph, deriving its energy from organic compounds, and it thrives optimally at a temperature of 37.0°C. C. botulinum B2 450 is strictly anaerobic, meaning it requires an oxygen-free environment for growth and metabolism.↵↵The species is known to inhabit diverse environments, suggesting a wide ecological adaptability. Its ability to survive and proliferate in various habitats underscores its resilience and potential competitive advantage in anaerobic niches. The combination of its morphological characteristics and metabolic capabilities positions C. botulinum B2 450 as a significant player in its ecological context, particularly in environments where organic matter is abundant and oxygen is limited. This adaptability may facilitate its role in the decomposition of organic materials, influencing nutrient cycling within its habitat." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1379739 NZ_JXSU01000010.1 Bac0005989 Spirosoma radiotolerans str. DG5A Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma radiotolerans 1379870 NZ_CP010429.1 Bac0005990 Rufibacter sp. DG15C Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Rufibacter Rufibacter sp. DG15C 1379909 NZ_CP010776.1 Bac0005991 Paenibacillus darwinianus str. Br Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus darwinianus 1380763 JFHT00000000.1 Bac0005992 Streptomycetaceae bacterium MP113-05 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomycetaceae bacterium MP113-05 1380770 AWQV00000000.1 Bac0005993 Lactococcus garvieae TRF1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae 1380772 AVFE00000000.1 Bac0005994 Streptococcus equi subsp. zooepidemicus Sz4is "Streptococcus equi subsp. zooepidemicus Sz4is is a Gram-positive, non-sporulating cocci that typically exhibits a characteristic arrangement in pairs and chains. This microbe is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which may contribute to its versatility in host-associated habitats. ↵↵As a subspecies of Streptococcus equi, S. equi subsp. zooepidemicus Sz4is is found primarily in association with various animal hosts, suggesting a close relationship with its ecological niches. The facultative nature of this bacterium enables it to adapt to varying oxygen conditions, potentially facilitating its survival in diverse biological environments, including those found within animal hosts.↵↵Understanding the physiological traits of S. equi subsp. zooepidemicus Sz4is can provide insights into its ecological role and interactions with host organisms, particularly in environments where oxygen availability fluctuates. The ability to exist in pairs and chains may also influence its colonization strategies and interactions within microbial communities in host-associated habitats. Further investigation into its ecological dynamics may reveal important aspects of its behavior and potential roles in host health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Pairs-Chains Nonsporulating 1381082 JAUE00000000.1 Bac0005995 Rhodococcus erythropolis DN1 "Rhodococcus erythropolis DN1 is a Gram-positive, filamentous, rod-shaped bacterium that thrives in aerobic conditions. This microorganism exhibits an optimal growth temperature of 20.0°C and has been isolated from diverse habitats, indicating its ecological versatility. The filamentous arrangement of its cells may enhance its adaptability to different environmental niches, facilitating nutrient acquisition and biofilm formation in various substrates.↵↵R. erythropolis DN1 is notable for its potential biotechnological applications, particularly in bioremediation processes, due to its ability to degrade a wide range of organic compounds. Its aerobic nature suggests a metabolic flexibility that may allow it to utilize various carbon sources under oxygen-rich conditions. The ability to inhabit multiple environments further supports its role in ecological resilience and nutrient cycling.↵↵Understanding the specific metabolic pathways utilized by R. erythropolis DN1 in diverse habitats may offer insights into its ecological role as a decomposer and its potential contributions to environmental bioremediation strategies. Further investigation into its metabolic capabilities and interactions within microbial communities could provide valuable information regarding its functional significance in various ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 1381122 AUZK00000000.1 Bac0005996 Limosilactobacillus fermentum 3872 "Limosilactobacillus fermentum 3872 is a Gram-positive bacterium characterized by its rod shape and tendency to form chains. This microbe exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its versatility in oxygen utilization suggests an adaptability to various habitats, which may include fermented foods and the gastrointestinal tracts of different organisms.↵↵This species is part of a diverse group of lactic acid bacteria, known for their role in fermentation processes. Limosilactobacillus fermentum 3872 contributes to the production of lactic acid, which can influence the pH of its surroundings, thereby playing a role in food preservation and safety. The presence of this organism in multiple habitats indicates its potential significance in diverse ecological niches, possibly participating in the fermentation of plant materials and contributing to the microbiota of the gut.↵↵The ability of Limosilactobacillus fermentum 3872 to form chains may enhance its stability in food matrices and its interactions with other microorganisms. This trait could provide insights into its role in microbial communities, particularly in fermented products where cooperative interactions are essential for the development of desired flavors and textures. Understanding the ecological dynamics involving Limosilactobacillus fermentum 3872 could pave the way for its application in food technology and probiotic development." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1381124 NZ_CP011537.1 Bac0005997 Asaia bogorensis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Asaia Asaia bogorensis 1382230 CBLX000000000.1 Bac0005998 Neotamlana nanhaiensis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Neotamlana Neotamlana nanhaiensis 1382798 JTDV00000000.1 Bac0005999 Chromobacterium amazonense str. 56AF Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium amazonense aerobic 1382803 MTBD00000000.1 Bac0006000 Halorubrum sp. Ea8 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. Ea8 1383841 NHPF00000000.1 Bac0006001 Halorubrum sp. Eb13 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. Eb13 1383843 NHPE00000000.1 Bac0006002 Halorubrum halodurans Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum halodurans 1383851 NHPJ00000000.1 Bac0006003 Ureibacillus manganicus DSM 26584 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Ureibacillus Ureibacillus manganicus 1384049 JPVN00000000.1 Bac0006004 Ureibacillus sinduriensis BLB-1 = JCM 15800 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Ureibacillus Ureibacillus sinduriensis 1384057 JPVO00000000.1 Bac0006005 Rhodococcus sp. P27 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. P27 1384060 AVCO00000000.1 Bac0006006 Pseudomonas putida S13.1.2 "Pseudomonas putida S13.1.2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a facultative heterotroph, it is capable of utilizing a variety of organic compounds as energy sources, allowing it to thrive in diverse environments, particularly in soil and wastewater habitats. This metabolic versatility is a hallmark of the Pseudomonas genus, enabling members to adapt to varying nutrient availability and environmental conditions.↵↵The ecological role of Pseudomonas putida S13.1.2 in soil and wastewater ecosystems can be significant, particularly in the context of bioremediation. Its ability to degrade various organic pollutants may contribute to the detoxification processes in contaminated environments, thereby enhancing soil health and water quality. The bacterium's facultative anaerobic nature suggests it can also survive in both oxygen-rich and low-oxygen conditions, further supporting its resilience and adaptability in fluctuating habitats.↵↵Overall, Pseudomonas putida S13.1.2 exemplifies the ecological importance of soil-dwelling microbes in nutrient cycling and environmental remediation, underscoring the potential applications of such strains in biotechnology and environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 1384061 NZ_CP010979.1 Bac0006007 Corynebacterium sp. DNF00584 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. DNF00584 1384076 LSCZ00000000.1 Bac0006008 Prevotella sp. DNF00663 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. DNF00663 1384078 LSDM00000000.1 Bac0006009 Veillonella sp. DNF00869 "Currently, very little is known about the microbe 'Veillonella sp. DNF00869'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. DNF00869 1384081 LSDQ00000000.1 Bac0006010 Methyloceanibacter caenitepidi Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Methyloceanibacter Methyloceanibacter caenitepidi 1384459 NZ_AP014648.1 Bac0006011 Skermanella aerolata KACC 11604 "Skermanella aerolata KACC 11604 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This mesophilic organism exhibits typical features of Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane, which may influence its interactions with the environment and other microorganisms. ↵↵The rod shape of Skermanella aerolata suggests a potential adaptability to various ecological niches, allowing it to maintain structural integrity and potentially facilitating motility. The optimal growth temperature indicates a preference for moderate thermal conditions, which may align with its ecological distribution in environments that experience temperate climates. ↵↵While specific ecological roles and interactions remain to be elucidated, the physiological traits of this bacterium suggest that it may play a role in nutrient cycling within its habitat, potentially contributing to the degradation of organic materials or influencing microbial community structures. Understanding the growth characteristics and environmental preferences of Skermanella aerolata KACC 11604 could provide insights into its functional capacities in microbial ecosystems, emphasizing the importance of temperature and morphology in microbial adaptation and survival." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Skermanella Skermanella aerolata Gram-negative rod 29 mesophilic 1385368 AVFK00000000.1 Bac0006012 Skermanella stibiiresistens SB22 "Skermanella stibiiresistens SB22 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe's Gram-negative status indicates a complex cell wall structure that may contribute to its environmental resilience and metabolic versatility. The rod shape is typical of many bacteria within its phylogenetic affiliations, potentially influencing its motility and colonization abilities in various habitats.↵↵As an aerobic organism, Skermanella stibiiresistens SB22 relies on oxygen for its metabolic processes, which may imply a role in biogeochemical cycles, particularly in environments rich in organic matter where oxygen is available. Understanding the growth conditions and physiological traits of this bacterium can aid in elucidating its potential applications in bioremediation or other biotechnological processes, particularly in contexts where its unique resistance mechanisms may be leveraged.↵↵The optimal growth temperature of 29.0°C suggests that Skermanella stibiiresistens SB22 is well adapted to moderate environmental conditions, possibly indicating a niche in temperate ecosystems. Further exploration of its metabolic pathways and interactions with other microorganisms could provide insights into its ecological role and contributions to microbial community dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Skermanella Skermanella stibiiresistens Gram-negative rod aerobic 29 mesophilic 1385369 AVFL00000000.1 Bac0006013 Pontibacillus marinus BH030004 = DSM 16465 "Pontibacillus marinus BH030004, also known as DSM 16465, is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This microbe thrives in aerobic environments and exhibits optimal growth at a temperature of 29.0°C. The sporulation capability of P. marinus BH030004 is noteworthy, as it allows the organism to survive adverse environmental conditions, potentially enhancing its resilience in fluctuating habitats.↵↵As a member of the Pontibacillus genus, this bacterium is adapted to specific ecological niches, often associated with marine environments. Its aerobic nature suggests a reliance on oxygen for metabolic processes, which may influence its distribution in oxygen-rich habitats. The ability to form spores might provide an advantage in the marine ecosystem, where changes in salinity, temperature, and nutrient availability can be significant. ↵↵Overall, the traits of Pontibacillus marinus BH030004 indicate its potential role in nutrient cycling within its habitat, particularly in marine sediments, where spore-forming bacteria can contribute to the breakdown of organic matter and the recycling of nutrients essential for other microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pontibacillus Pontibacillus marinus Gram-positive rod motile aerobic 29 mesophilic spore-forming 1385511 AVPF00000000.1 Bac0006014 Lysobacter defluvii IMMIB APB-9 = DSM 18482 "Lysobacter defluvii IMMIB APB-9 (DSM 18482) is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is part of the Lysobacter genus, which is noted for its diverse metabolic capabilities and ecological versatility.↵↵As a member of the Lysobacter genus, L. defluvii is expected to exhibit traits associated with soil and aquatic environments, where it may play a role in the degradation of organic materials. Its aerobic nature suggests a reliance on oxygen for growth and metabolism, which aligns with the ecological niches it occupies. The optimal temperature of 29.0°C indicates that this bacterium may be well-adapted to temperate environments, potentially influencing its distribution and activity in soil and water systems.↵↵Furthermore, the non-spore-forming trait of L. defluvii implies that it may have specific survival strategies in fluctuating environmental conditions, potentially relying on active metabolism rather than dormancy mechanisms typical of spore-forming bacteria. This characteristic may enhance its role in nutrient cycling and microbial community dynamics, particularly in habitats where consistent moisture and nutrient availability are present.↵↵Overall, Lysobacter defluvii represents an important component of the microbial ecosystem, contributing to organic matter decomposition and nutrient turnover, which are critical processes for ecosystem health and sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Novilysobacter Novilysobacter defluvii Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 1385515 AVBH00000000.1 Bac0006015 Knoellia flava TL1 "Knoellia flava TL1 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 29.0°C. As a non-spore-forming organism, K. flava TL1 relies on its aerobic capabilities for survival and growth in environments where oxygen is available. The organism's rod shape is characteristic of many bacteria within its taxonomic group, potentially influencing its ecological interactions and niche specialization.↵↵Given its aerobic nature and specific temperature preference, K. flava TL1 may be well-adapted to environments that are rich in organic matter and where oxygen levels are maintained, such as soil or decaying plant material. This adaptability suggests a role in nutrient cycling within its ecological niche, contributing to the breakdown of organic compounds and possibly influencing soil health and fertility. Further investigations into its metabolic pathways and interactions with other microbes could provide deeper insights into its ecological functions and potential biotechnological applications." Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Knoellia Knoellia flava Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1385518 AVPI00000000.1 Bac0006016 Knoellia aerolata DSM 18566 "Knoellia aerolata DSM 18566 is a Gram-positive, ovoid bacterium characterized by its aerobic metabolism and non-spore-forming nature. This species thrives optimally at a temperature of 29.0 °C, suggesting a preference for moderate environmental conditions. The Gram-positive nature of K. aerolata indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various habitats.↵↵As an aerobic organism, K. aerolata requires oxygen for its metabolic processes, which may influence its ecological niche, potentially associating it with oxygen-rich environments. The absence of sporulation in this species suggests a reliance on vegetative growth and reproduction under suitable conditions, which may limit its survival in extreme or fluctuating environmental scenarios.↵↵The specific adaptation to moderate temperatures and aerobic conditions may position K. aerolata within microbial communities that thrive in similar habitats, such as soil or decaying organic matter, where oxygen availability is typically high. Understanding the ecological role of K. aerolata could provide insights into its interactions within these microbial communities and its potential contributions to biogeochemical cycles in its native environment." Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Knoellia Knoellia aerolata Gram-positive ovoid non-motile aerobic 29 mesophilic non-spore-forming 1385519 AVPL00000000.1 Bac0006017 Knoellia sinensis KCTC 19936 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Knoellia Knoellia sinensis aerobic 1385520 AVPJ00000000.1 Bac0006018 Knoellia subterranea KCTC 19937 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Knoellia Knoellia subterranea aerobic 29 mesophilic 1385521 AVPK00000000.1 Bac0006019 Burkholderia mayonis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mayonis 1385591 NZ_CP013388.1 Bac0006020 Desulfofustis sp. PB-SRB1 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfofustis Desulfofustis sp. PB-SRB1 1385624 AVFQ00000000.3 Bac0006021 Hymenobacter sp. DG25A Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. DG25A 1385663 NZ_CP012623.1 Bac0006022 Hymenobacter sp. DG25B Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. DG25B 1385664 NZ_CP010055.1 Bac0006023 Aequorivita soesokkakensis str. RSSK-12 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita soesokkakensis 1385699 LXIE00000000.1 Bac0006024 Leptolyngbya sp. Heron Island J Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. Heron Island J 1385935 AWNH00000000.1 Bac0006025 Bifidobacterium breve JCM 7019 "Bifidobacterium breve JCM 7019 is a thermophilic, heterotrophic microbe that produces energy through fermentation, possesses a Gram-positive cell wall, and exhibits a rod-like shape. This microbe thrives in temperatures ranging from 37°C to 45°C, making it an efficient inhabitant of the human gut, where it can be found in various body sites such as the large intestine, small intestine, and oral cavity. As a chemoheterotroph, Bifidobacterium breve JCM 7019 obtains its energy by breaking down organic compounds rather than producing its own nutrients through photosynthesis or chemosynthesis. This microbial strain produces energy through fermentation, utilizing complex carbohydrates and proteins as its primary sources of nutrients. Gram staining reveals that Bifidobacterium breve JCM 7019 has a thick, gram-positive cell wall, which is characteristic of many Bifidobacterium species. Its rod-like shape allows it to navigate the complex environments of the human gut, where it can interact with other microbes and play a crucial role in maintaining a healthy gut microbiome. This microbe is an obligate anaerobe, meaning it requires a low-oxygen environment to survive and thrive. In fact, it is sensitive to oxygen and dies quickly in aerobic conditions. This adaptability is likely due to its ability to colonize the human gut, where oxygen levels are typically low. Some additional notes about Bifidobacterium breve JCM 7019: It has been linked to various health benefits, including improved gastrointestinal health, enhanced immune function, and reduced symptoms of irritable bowel syndrome. Additionally, research has shown that this microbe can produce vitamin K2, a nutrient essential for bone health and cardiovascular function." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe 1385940 NZ_CP006713.1 Bac0006026 Pseudomonas sp. EGD-AK9 str. EGD-Ak9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. EGD-AK9 1386078 AVOF00000000.1 Bac0006027 Helicobacter pylori X47-2AL "Helicobacter pylori X47-2AL is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically found as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the normal body temperature of its human hosts. H. pylori is known for its association with the gastric mucosa, highlighting its habitat as host-associated. ↵↵The microaerophilic nature of this organism suggests it requires reduced levels of oxygen for growth, which is consistent with its adaptation to the gastric environment where oxygen concentration is limited. The spiral morphology of H. pylori is thought to aid in its motility and ability to penetrate the viscous gastric mucus layer, allowing it to establish colonization in the harsh acidic conditions of the stomach. ↵↵Understanding the growth characteristics and habitat preferences of H. pylori X47-2AL can provide insights into its ecological niche within the human gastrointestinal tract, where it may interact with host immune responses and microbial communities. This knowledge could inform future studies on the role of H. pylori in gastric health and disease, as well as its potential impact on the microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1386083 AWNG00000000.1 Bac0006028 Francisella tularensis subsp. novicida PA10-7858 "Francisella tularensis subsp. novicida PA10-7858 is a Gram-negative bacterium characterized by its rod shape and presence as single cells. This subspecies is primarily found in aquatic habitats, indicating its potential ecological roles in freshwater environments. F. tularensis subsp. novicida PA10-7858 requires oxygen for growth, classifying it as an aerobic organism. ↵↵The ability to survive and thrive in aquatic settings may suggest adaptations that enable it to occupy specific niches within these ecosystems. Given its physiological traits, further studies could explore its interactions with other microbial communities and its role in nutrient cycling within aquatic environments. Understanding these interactions could provide insights into the ecological significance of this subspecies and its potential effects on aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 1386968 NZ_CP016635.1 Bac0006029 Primorskyibacter flagellatus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Primorskyibacter Primorskyibacter flagellatus 1387277 FWYD00000000.1 Bac0006030 Paludisphaera borealis str. PX4 "Paludisphaera borealis str. PX4 is a Gram-negative, spherical bacterium that thrives optimally at 16.0°C, utilizing organic compounds as an energy source. As an aerobic organism, P. borealis str. PX4 relies on oxygen for its metabolic processes, positioning it within environments rich in organic matter and oxygen availability. This microbe is classified as an organotroph and chemotroph, indicating its ability to derive energy from organic substrates through chemical processes.↵↵The spherical morphology of P. borealis str. PX4 may confer certain advantages in its nutrient uptake and interaction with surrounding microbial communities, potentially facilitating effective colonization within its ecological niche. Given its optimal growth temperature, this strain may be particularly well-suited for environments characterized by cooler climates, such as polar or temperate regions.↵↵The capacity of P. borealis str. PX4 to utilize organic compounds in aerobic conditions suggests its potential role in biogeochemical cycles, particularly in the breakdown and recycling of organic matter in its habitat. This trait may contribute to maintaining ecosystem health by promoting nutrient availability and supporting the diversity of microbial communities. Understanding the metabolic capabilities of P. borealis str. PX4 could provide insights into its ecological roles, particularly in cooler environments where organic carbon sources are prevalent." Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis Gram-negative sphere non-motile aerobic 16 organotroph; chemotroph psychrotolerant 1387353 NZ_CP019084.1 Bac0006031 Halomonas heilongjiangensis str. DSM 26881 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas heilongjiangensis 1387883 PNRE00000000.1 Bac0006032 Campylobacter lari NCTC 11845 str. RM3659 "Campylobacter lari NCTC 11845 str. RM3659 is a Gram-negative microbe characterized by its spirilla shape and ability to form chains or exist as singles. This bacterium is microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which is typical for many members of the genus Campylobacter. The habitat of C. lari is diverse, suggesting that it may inhabit various ecological niches, although specific environments are not detailed in the provided data.↵↵The unique morphological traits of C. lari, combined with its microaerophilic nature, suggest an adaptation to specific ecological conditions where oxygen levels are limited but not absent. This adaptation may facilitate its survival and proliferation in environments that are inhospitable to strictly aerobic or anaerobic organisms. Understanding these traits enhances our comprehension of the ecological roles that C. lari may play in its habitats, potentially influencing microbial community dynamics and interactions within its ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles 1388749 NZ_CP007775.1 Bac0006033 Campylobacter subantarcticus LMG 24374 "Campylobacter subantarcticus LMG 24374 is a Gram-negative, rod-shaped bacterium classified within the Campylobacter genus. This microbe exhibits a microaerophilic oxygen requirement, indicating that it thrives in environments with lower levels of oxygen than are typically found in the atmosphere. Such conditions are often associated with specific ecological niches, such as animal gastrointestinal tracts or certain aquatic environments, where oxygen concentrations can be variable. ↵↵The rod shape of C. subantarcticus is characteristic of many members of the Campylobacter genus, which are known for their motility and unique spiral or curved morphology. The microaerophilic nature of this organism suggests a specialized metabolic adaptation, allowing it to efficiently utilize oxygen in low-concentration settings, a trait that may be advantageous in its native habitat.↵↵Furthermore, the ecological implications of C. subantarcticus may extend to its interactions within microbial communities, potentially influencing nutrient cycling and microbial diversity in its environment. Understanding these traits can provide insights into the roles this bacterium may play in specific ecosystems, particularly in relation to its survival strategies in microaerobic environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter subantarcticus Gram-negative rod microaerophile 1388751 NZ_CP007772.1 Bac0006034 Campylobacter peloridis LMG 23910 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter peloridis microaerophile 1388753 NZ_CP007766.1 Bac0006035 Caldanaerobacter subterraneus subsp. yonseiensis KB-1 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Caldanaerobacter Caldanaerobacter subterraneus No 1 Anaerobic Chemoheterotroph Thermophilic Multiple Nonsporulating 1388761 AXDC00000000.1 Bac0006036 Pseudomonas taiwanensis SJ9 "Pseudomonas taiwanensis SJ9 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and does not form spores. This species thrives optimally at a temperature of 32.0°C, suggesting its potential adaptation to moderate thermal environments. ↵↵Being a member of the Pseudomonas genus, P. taiwanensis SJ9 may share metabolic versatility typical of its relatives, which can enable survival in diverse ecological niches. The absence of spore formation indicates a reliance on vegetative growth and possibly limits its survival under extreme environmental conditions typically encountered by spore-forming organisms. ↵↵The aerobic nature of P. taiwanensis SJ9 implies that it requires oxygen for growth, which may influence its distribution in habitats where oxygen is readily available. Understanding the environmental preferences and metabolic capabilities of this bacterium could provide insights into its role in biogeochemical cycles, particularly in environments where organic matter decomposition is prevalent. Further studies could elucidate its ecological interactions and potential applications in bioremediation or other biotechnological uses." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas taiwanensis Gram-negative rod aerobic 32 mesophilic non-spore-forming 1388762 AXUP00000000.1 Bac0006037 Sulfitobacter sp. SK011 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. SK011 1389004 NZ_CP025803.1 Bac0006038 Sulfitobacter sp. SK012 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. SK012 1389005 NZ_CP025806.1 Bac0006039 Shimia sp. SK013 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia sp. SK013 1389006 LAJH00000000.1 Bac0006040 Sulfitobacter sp. SK025 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. SK025 1389011 NZ_CP025810.1 Bac0006041 Marinobacter shengliensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter shengliensis 1389223 PXNO00000000.1 Bac0006042 Photorhabdus temperata J3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus temperata 1389415 AXDT00000000.1 Bac0006043 Leifsonia xyli subsp. cynodontis DSM 46306 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia xyli 1389489 NC_022438.1 Bac0006044 Mycobacterium paragordonae str. 49061 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paragordonae 1389713 NZ_CP025547.1 Bac0006045 Pseudoalteromonas sp. DL-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. DL-6 1390185 NZ_CP019771.1 Bac0006046 Ochrobactrum sp. EGD-AQ16 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum sp. EGD-AQ16 1390361 AWEU00000000.1 Bac0006047 Sphingomonas sp. LK11 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. LK11 1390395 NZ_CP013917.1 Bac0006048 Enterococcus faecium 10/96A "Enterococcus faecium 10/96A is a Gram-positive, cocci-shaped bacterium classified within the Enterococcus genus. This strain exhibits facultative anaerobic characteristics, allowing it to thrive in both aerobic and anaerobic environments. Enterococcus faecium is known for its resilience and adaptability, often found in diverse habitats, including the intestinal tracts of humans and animals, as well as in various environmental niches.↵↵The Gram-positive nature of E. faecium 10/96A indicates the presence of a thick peptidoglycan layer in its cell wall, which plays a crucial role in its structural integrity and ability to withstand external stresses. This trait is significant for its survival in competitive environments, such as the gastrointestinal tract, where it may engage in microbial interactions that influence gut health.↵↵While specific pathogenicity traits for strain 10/96A are not detailed here, the broader species is recognized for its potential in clinical settings, particularly as an opportunistic pathogen. However, its ecological role extends beyond human health, as Enterococcus species are involved in nutrient cycling and can contribute to the microbiota of various ecosystems.↵↵Understanding the physiological traits of Enterococcus faecium 10/96A enhances our knowledge of its ecological functions and interactions within microbial communities, particularly its ability to adapt to varying oxygen levels, which may influence its competitive advantage in both natural and managed environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1391465 AXOL00000000.1 Bac0006049 Mucilaginibacter pineti Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter pineti 1391627 FNAI00000000.1 Bac0006050 Vulgatibacter incomptus Pseudomonadati Myxococcota Myxococcia Myxococcales Vulgatibacteraceae Vulgatibacter Vulgatibacter incomptus 1391653 NZ_CP012332.1 Bac0006051 Labilithrix luteola str. DSM 27648 Pseudomonadati Myxococcota Deltaproteobacteria Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola 1391654 NZ_CP012333.1 Bac0006052 Mycobacterium avium subsp. avium 10-9275 "Mycobacterium avium subsp. avium 10-9275 is a Gram-positive, rod-shaped bacterium typically found in a host-associated habitat. This strain displays a unique arrangement of cells as single rods, which is characteristic of certain mycobacterial species. Optimal growth occurs at a temperature of 37.0°C, suggesting its adaptation to host environments where temperatures are maintained within a physiological range.↵↵As a chemoorganotroph, M. avium subsp. avium 10-9275 utilizes organic compounds as its energy source, a trait that enables it to thrive in nutrient-rich environments often associated with host organisms. The microaerophilic nature of this strain indicates that it requires reduced oxygen levels for optimal growth, positioning it as a microbe that may inhabit specific niche environments within hosts or associated substrates where oxygen concentrations are limited.↵↵Understanding the growth conditions and metabolic capabilities of M. avium subsp. avium 10-9275 can provide insights into its ecological role within host-associated habitats. Its adaptation to microaerophilic conditions and reliance on organic substrates may play a crucial role in its interactions with host organisms, impacting both microbial community dynamics and host health. Further exploration of its ecological interactions may reveal additional layers of complexity in host-microbe relationships." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1391991 AYNY00000000.1 Bac0006053 Mycobacterium avium 10-5560 "Mycobacterium avium 10-5560 is a Gram-positive, rod-shaped bacterium characterized by its growth in single-cell arrangements. This microbe is classified as a chemoorganotroph, utilizing organic compounds for energy, and exhibits microaerophilic characteristics, indicating it thrives in environments with lower levels of oxygen than are typically found in the atmosphere. The optimal growth temperature for M. avium 10-5560 is approximately 37.0°C, which aligns with the physiological conditions often found within host organisms.↵↵As a host-associated bacterium, M. avium 10-5560 likely inhabits specific niches within its host, potentially influencing or being influenced by the host's immune responses and metabolic processes. The microaerophilic nature of this strain suggests that it may play a role in anaerobic processes occurring in the presence of oxygen or in tissues where oxygen levels are limited. This trait may enable it to occupy unique ecological niches within host environments, contributing to its survival and possibly its interactions with the host microbiome. Further investigation into the ecological role and interactions of M. avium 10-5560 within its host may provide insights into the dynamics of host-associated microbial communities and their functions." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1391999 AYNS00000000.1 Bac0006054 Acinetobacter nectaris CIP 110549 "Acinetobacter nectaris CIP 110549 is a Gram-negative, ovoid-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on environmental moisture and nutrient availability for survival and propagation. ↵↵The ovoid morphology of A. nectaris may contribute to its adaptability in various habitats, potentially allowing it to occupy ecological niches where other microbial forms might be less competitive. The preference for aerobic conditions indicates that this bacterium may play a role in oxygen-rich environments, possibly engaging in interactions with other aerobic microorganisms. ↵↵Given its optimal temperature of 29.0°C, A. nectaris may be well-suited for environments that experience moderate temperatures, such as those found in temperate climates or specific microhabitats. Further exploration of its ecological role could reveal insights into its interactions within microbial communities, particularly in relation to nutrient cycling and the dynamics of microbial populations in aerobic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter nectaris Gram-negative ovoid non-motile aerobic 29 mesophilic non-spore-forming 1392540 AYER00000000.1 Bac0006055 Lachnospiraceae bacterium TWA4 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium TWA4 1392836 JPZU00000000.1 Bac0006056 Pseudomonas oryzae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas oryzae 1392877 NZ_LT629751.1 Bac0006057 Candidatus Methanoperedens nitroreducens str. ANME-2d Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens nitratireducens 1392998 JMIY00000000.1 Bac0006058 Cellulosimicrobium sp. I38E Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium sp. I38E 1393139 LUAZ00000000.1 Bac0006059 Segatella salivae F0493 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella salivae 1395125 AWGW00000000.1 Bac0006060 Sporolactobacillus laevolacticus DSM 442 Bacillati Bacillota Bacilli Caryophanales Sporolactobacillaceae Sporolactobacillus Sporolactobacillus laevolacticus anaerobic / aerobic / microaerophile 1395513 AWTC00000000.1 Bac0006061 Streptomyces noursei PD-1 "Streptomyces noursei PD-1 is a Gram-positive bacterium belonging to the genus Streptomyces, known for its filamentous structure and complex life cycle. This organism is part of a diverse group of soil-dwelling actinobacteria, which are notable for their ability to produce a wide array of bioactive secondary metabolites, including antibiotics and antifungal compounds. ↵↵As a member of the Streptomyces genus, S. noursei PD-1 exhibits characteristic features such as a high G+C content in its DNA and the formation of mycelium. The mycelial structure facilitates nutrient acquisition and growth within various environmental niches. Although specific metabolic capabilities and ecological roles of S. noursei PD-1 have not been detailed, Streptomyces species are generally known for their contributions to soil health through organic matter decomposition and nutrient cycling.↵↵Furthermore, the ability of Streptomyces species to produce a diverse range of bioactive compounds suggests that S. noursei PD-1 may play a significant role in microbial interactions within its ecosystem, potentially influencing the dynamics of microbial communities and plant health. This interaction is particularly relevant in agricultural settings, where the presence of beneficial microbes can enhance soil fertility and crop resilience. Thus, S. noursei PD-1 represents an important player in the complex ecological web of soil microbiomes." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces noursei Positive 1395572 AXDB00000000.2 Bac0006062 Enterobacter sp. DC4 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. DC4 1395580 AZUB00000000.1 Bac0006063 Paenibacillus sp. MAEPY2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. MAEPY2 1395587 AWUK00000000.1 Bac0006064 Leptospira interrogans serovar Linhai str. 56609 "Leptospira interrogans serovar Linhai str. 56609 is a Gram-negative bacterium characterized by its distinctive spirilla shape and strict aerobic metabolism. This microbe thrives optimally at a temperature of 28.0°C, indicating a preference for environments that may resemble temperate conditions. As a member of the Leptospira genus, this strain is typically associated with host organisms, suggesting that it may have specific interactions within its biological niche. ↵↵The Gram-negative nature of L. interrogans serovar Linhai str. 56609 implies a complex cell wall structure that may contribute to its adaptability in various environments associated with host species. While the precise ecological roles and interactions of this strain remain to be fully elucidated, its aerobic requirement suggests that it may inhabit well-oxygenated environments, possibly within host tissues or in associated water sources that support its survival and proliferation.↵↵Given its habitat and physiological traits, L. interrogans serovar Linhai str. 56609 may play a role in the microbial communities associated with its hosts, potentially influencing host health or contributing to the maintenance of microbial diversity in its ecological niche. Further investigation into its ecological interactions could provide insights into the dynamics of host-associated microbiomes and the environmental factors that support the survival of this unique bacterium." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1395589 NZ_CP006723.1 Bac0006065 Bordetella genomosp. 1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 1 1395607 NEVL00000000.1 Bac0006066 Aliirhizobium smilacinae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Aliirhizobium Aliirhizobium smilacinae 1395944 VDMN00000000.1 Bac0006067 Streptomyces sp. HCCB10043 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. HCCB10043 1396518 AWOQ00000000.1 Bac0006068 Marinobacter sp. ES-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. ES-1 1396858 AXBV00000000.1 Bac0006069 Acinetobacter sp. COS3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. COS3 1397525 AXCD00000000.1 Bac0006070 Candidatus Micropelagos thuwalensis str. RS24 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Micropelagius Candidatus Micropelagius thuwalensis 1397666 AWXE00000000.1 Bac0006071 Xenorhabdus bovienii str. feltiae Florida Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 1397852 CBSU000000000.1 Bac0006072 Xenorhabdus bovienii str. feltiae Moldova Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 1398200 CBSV000000000.1 Bac0006073 Xenorhabdus bovienii str. puntauvense Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 1398201 CBSW000000000.1 Bac0006074 Xenorhabdus bovienii str. oregonense Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 1398202 CBSX000000000.1 Bac0006075 Xenorhabdus bovienii str. kraussei Quebec Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 1398203 CBSY000000000.1 Bac0006076 Xenorhabdus bovienii str. kraussei Becker Underwood Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 1398204 CBSZ000000000.1 Bac0006077 Paraburkholderia monticola str. JC2948 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia monticola 1399968 LRBG00000000.1 Bac0006078 Lacticaseibacillus fabifermentans T30PCM01 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus fabifermentans 1400520 AWWK00000000.1 Bac0006079 Candidatus Contendobacter odensis Run_B_J11 Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Competibacteraceae Candidatus Contendibacter Candidatus Contendibacter odensensis 1400861 CBTK000000000.1 Bac0006080 Candidatus Competibacter denitrificans Run_A_D11 Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Competibacteraceae Candidatus Competibacter Candidatus Competibacter denitrificans 1400863 CBTJ000000000.2 Bac0006081 Hoylesella timonensis S9-PR14 "Hoylesella timonensis S9-PR14 is a Gram-negative, nonsporulating bacterium characterized as a chemoheterotroph and obligate anaerobe. This microbe has been isolated from a variety of habitats, suggesting a versatile ecological niche. As a chemoheterotroph, H. timonensis utilizes organic compounds as both a carbon and energy source, which positions it within a broader metabolic framework that is reliant on the decomposition of organic matter in its anaerobic environments. ↵↵The inability to form spores indicates that H. timonensis may rely on other survival strategies for enduring unfavorable conditions, which could include forming biofilms or associations with other microorganisms. Its anaerobic requirement further emphasizes its adaptation to low-oxygen environments, potentially aligning it with the microbiota of various anaerobic habitats such as sediments or the gastrointestinal tracts of higher organisms. ↵↵The ecological versatility of H. timonensis may contribute to its roles in nutrient cycling and organic matter degradation within its habitats. The presence of this bacterium in diverse environments highlights the significance of anaerobic microbes in ecological processes, particularly in environments where oxygen is limited, thus underscoring the importance of studying such organisms for a deeper understanding of microbial ecology and biogeochemical cycles." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella timonensis Negative No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 1401062 JRPQ00000000.1 Bac0006082 Corynebacterium tuscaniense DNF00037 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuscaniense 1401064 JRNG00000000.1 Bac0006083 Oligella urethralis DNF00040 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Oligella Oligella urethralis 1401065 JRNI00000000.1 Bac0006084 Veillonella montpellierensis DNF00314 "Veillonella montpellierensis DNF00314 is a Gram-negative, non-spore-forming spherical bacterium that thrives in anaerobic environments. This microbe is part of the genus Veillonella, which is known for its role in the human microbiome, particularly in the oral cavity and gastrointestinal tract. The spherical shape of V. montpellierensis suggests its adaptation to specific ecological niches where such morphology may confer advantages in nutrient acquisition or biofilm formation.↵↵As a strictly anaerobic organism, V. montpellierensis relies on fermentation processes for energy production, utilizing organic substrates in the absence of oxygen. This metabolic characteristic aligns with the broader ecological role of Veillonella species, which typically contribute to the degradation of organic matter and are involved in the fermentation of lactate to propionate and acetate. ↵↵Understanding the biochemical pathways and interactions of V. montpellierensis can provide insights into its potential roles in human health and disease, especially considering the significance of anaerobic bacteria in maintaining gut homeostasis. The presence of this organism in specific environments may indicate a complex interplay with other microbial inhabitants, potentially influencing metabolic processes and overall microbial diversity. Further research could elucidate the specific contributions of V. montpellierensis to the microbiome and its implications for host health." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella montpellierensis Gram-negative sphere anaerobic non-spore-forming 1401067 JRNT00000000.1 Bac0006085 Prevotella denticola DNF00960 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella denticola 1401077 JRNO00000000.1 Bac0006086 Mogibacterium timidum ATCC 33093 "Mogibacterium timidum ATCC 33093 is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites across different species, including the oral cavity, gut, and skin. As an Obligate Anaerobe, this microbe requires a strict anaerobic environment to survive, which is reflected in its inability to tolerate oxygen. The Gram-positive cell wall of M. timidum ATCC 33093 provides a thick layer of protection, while its rod shape allows for efficient movement and colonization in its preferred environments. As a mesophile, M. timidum ATCC 33093 grows best in temperatures between 20-45°C, making it well-suited to the warm, nutrient-rich environments found in the human body. Its classification as a Chemoheterotroph indicates that it relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its metabolic processes. The presence of M. timidum ATCC 33093 in diverse body sites suggests a high degree of adaptability and flexibility in its metabolic capabilities. This microbe has been implicated in the production of short-chain fatty acids, which play a crucial role in maintaining the balance of the gut microbiome, and its unique metabolic profile has led to research into its potential applications in biotechnology and medicine, particularly in the development of novel therapeutic strategies for gastrointestinal disorders." Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Mogibacterium Mogibacterium timidum Positive Anaerobe 1401079 JALU00000000.1 Bac0006087 Xylella fastidiosa MUL0034 "Xylella fastidiosa MUL0034 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This microbe thrives at an optimal temperature of 26.0°C and is primarily host-associated, suggesting a close relationship with specific plant hosts.↵↵As a member of the Xylella genus, it is noteworthy for its role in vascular plant systems, where it may influence plant health and physiology. The organism’s rod shape and aerobic nature imply that it may utilize oxygen-dependent metabolic pathways, which could play a role in its interactions with host plants. The Gram-negative cell wall structure of Xylella fastidiosa MUL0034 further indicates a complex outer membrane that may contribute to its environmental resilience and pathogenic potential, though specific pathogenic traits have not been detailed here.↵↵Understanding the optimal growth conditions and habitat of Xylella fastidiosa MUL0034 is essential for potential applications in microbiology and plant pathology. Its association with hosts and aerobic lifestyle may suggest adaptations for survival within the xylem, where it could exploit the nutrient-rich environment while also facing challenges such as plant defense mechanisms. This bacterium exemplifies the intricate relationships within microbial communities and their plant hosts, highlighting the importance of temperature and oxygen availability in shaping microbial behavior in agricultural contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles 1401256 NZ_CP006739.1 Bac0006088 Xanthomonas citri pv. glycines str. 8ra Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 1401257 NZ_CP017189.2 Bac0006089 Shigella dysenteriae WRSd3 "Shigella dysenteriae WRSd3 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This microbe thrives at an optimal temperature of 37.0°C, which corresponds to the average human body temperature, suggesting its adaptation to a host-associated habitat. As a chemoorganotroph, S. dysenteriae WRSd3 utilizes organic compounds as its energy source, enabling it to exploit nutrient-rich environments within its host. Additionally, it is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions, thereby enhancing its survivability in diverse microenvironments encountered within host tissues.↵↵Understanding the growth characteristics and metabolic capabilities of S. dysenteriae WRSd3 provides insights into its potential interactions within host organisms. Its ability to thrive in the human body and adapt to varying oxygen levels may contribute to its ecological versatility, potentially influencing both microbial community dynamics and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella dysenteriae Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 1401327 AXUT00000000.1 Bac0006090 Acinetobacter baumannii NCGM 237 "Acinetobacter baumannii NCGM 237 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells. This organism thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotrophic aerobe, relying on organic compounds as its energy source while requiring oxygen for growth. ↵↵A. baumannii NCGM 237 is known to inhabit multiple environments, which may include hospital settings and various ecological niches. Its ability to survive in diverse habitats may contribute to its resilience and adaptability, making it a notable species within the Acinetobacter genus. The organism's heterotrophic lifestyle enables it to utilize a range of organic substrates, potentially facilitating its survival in variable conditions.↵↵Given its optimal growth temperature, A. baumannii NCGM 237 may be particularly well-suited to thrive in warm environments, such as those found in human-associated habitats. This adaptability underscores the importance of understanding the ecological roles of such microbes, as they may contribute to nutrient cycling and other biological processes in their respective environments. The specific ecological interactions and contributions of A. baumannii NCGM 237 to its habitats warrant further investigation to fully elucidate its role in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1401639 NZ_AP013357.1 Bac0006091 Pseudosulfitobacter pseudonitzschiae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pseudosulfitobacter Pseudosulfitobacter pseudonitzschiae 1402135 NZ_CP022421.1 Bac0006092 Pseudomonas aeruginosa BL04 "Pseudomonas aeruginosa BL04 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives optimally at a temperature of 25.0°C and exhibits aerobic respiration, indicating its dependence on oxygen for metabolic processes. As a heterotroph, Pseudomonas aeruginosa BL04 utilizes organic compounds as its energy source, which allows it to inhabit a variety of environments. ↵↵Its versatility in habitat suggests that it can adapt to diverse ecological niches, potentially including soil, water, and various surfaces, where it may play a role in nutrient cycling and decomposition. The ability to thrive in multiple habitats highlights its ecological significance and adaptability, which may provide insights into its interactions with other microorganisms and its role in microbial communities. Understanding the traits of Pseudomonas aeruginosa BL04 can contribute to broader studies on microbial ecology and the dynamics of environmental microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1402545 AXPW00000000.1 Bac0006093 [Bacillus] enclensis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Rossellomorea [Bacillus] enclensis 1402860 FMAU00000000.1 Bac0006094 Priestia filamentosa str. Hbe603 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia filamentosa 1402861 NZ_CP015326.1 Bac0006095 Priestia filamentosa Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia filamentosa 1402861 FXAJ00000000.1 Bac0006096 Bartonella quintana JK 73 "Bartonella quintana JK 73 is a Gram-negative, rod-shaped bacterium that is nonsporulating and grows optimally at a temperature of 37.0°C. This bacterium is categorized as an aerobic organism, indicating its reliance on oxygen for metabolic processes. As a host-associated microbe, B. quintana JK 73 is typically found in close association with its host, which may influence its ecological dynamics and interactions within various biological systems.↵↵The nonsporulating nature of B. quintana JK 73 suggests that it may have evolved specific mechanisms to survive within host environments rather than relying on sporulation as a survival strategy during unfavorable conditions. This trait, combined with its optimal growth temperature of 37.0°C, aligns with its adaptation to the warm-blooded hosts it is associated with.↵↵Understanding the habitat and metabolic requirements of B. quintana JK 73 provides insight into its potential roles within host organisms and the broader microbial community. Its aerobic nature may facilitate interactions with other microbial species in oxygen-rich niches, contributing to the complexity of host-associated microbiomes. Such interactions could play a role in the overall health of the host, as well as in the dynamics of microbial competition and cooperation within the host-associated environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella quintana Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Nonsporulating 1402976 AZZX00000000.1 Bac0006097 Bacillus canaveralius str. M8-28 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus canaveralius 1403243 RWHA00000000.1 Bac0006098 Porphyromonas gingivalis AJW4 "Porphyromonas gingivalis AJW4 is a Gram-negative, nonsporulating rod-shaped bacterium characterized by its obligate anaerobic nature and optimal growth temperature of 37.0°C. This microbe is primarily associated with host organisms, indicating its reliance on specific biological environments for survival and proliferation. ↵↵As a member of the genus Porphyromonas, P. gingivalis AJW4 is likely to inhabit anaerobic niches within the host, such as the oral cavity, where it may contribute to the complex microbial communities found in dental biofilms. The organism’s adaptation to anaerobic conditions suggests a specialized metabolic pathway that enables it to thrive in environments depleted of oxygen, which is typical of periodontal tissues.↵↵Given its host-associated habitat, P. gingivalis AJW4 may play a significant role in the dynamics of microbial interactions within the oral ecosystem. Understanding the traits and environmental preferences of this bacterium may provide insights into its potential contributions to oral health and disease, particularly in the context of polymicrobial infections where interactions with other microbial species influence overall pathogenicity and ecological balance." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1403336 NZ_CP011996.1 Bac0006099 Stutzerimonas xanthomarina DSM 18231 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas xanthomarina 1403346 FQXA00000000.1 Bac0006100 Fervidicella metallireducens AeB "Fervidicella metallireducens AeB is a spore-forming, Gram-negative bacterium characterized by its rod-shaped morphology and obligate anaerobic metabolism. This microbe exhibits optimal growth at a temperature of 45.0 °C, indicating a preference for thermophilic environments. ↵↵As a spore-forming organism, F. metallireducens AeB has developed the ability to survive in extreme conditions, which is a significant trait for its resilience and adaptability in anaerobic habitats. The Gram-negative nature of this bacterium suggests a complex cell wall structure, which may play a role in its interaction with the surrounding environment and its metabolic processes.↵↵The anaerobic requirement of F. metallireducens AeB positions it within biogeochemical cycles where oxygen is limited, suggesting potential applications in bioremediation or bioenergy production. The ability to form spores allows this organism to withstand unfavorable conditions, thereby enhancing its survival in environments with fluctuating parameters. ↵↵Overall, Fervidicella metallireducens AeB exemplifies the adaptive strategies of thermophilic anaerobes, and its metabolic capabilities may contribute to the cycling of metals in extreme environments, highlighting its potential ecological significance in biogeochemical processes." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Fervidicella Fervidicella metallireducens Gram-negative rod anaerobic 45 thermophilic spore-forming 1403537 AZQP00000000.1 Bac0006101 Streptococcus sp. DORA_10 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. DORA_10 1403937 AZMH00000000.1 Bac0006102 Clostridium butyricum DORA_1 "Clostridium butyricum DORA_1 is a Gram-positive, anaerobic bacterium that belongs to the genus Clostridium. This microbe is characterized by its ability to thrive in environments devoid of oxygen, which is a defining trait of many members of this genus. Clostridium butyricum species, including DORA_1, are noted for their fermentation capabilities, particularly in producing butyric acid as a metabolic byproduct, which can play a role in various biological processes.↵↵The anaerobic nature of C. butyricum DORA_1 suggests its habitat is likely within environments such as the gastrointestinal tracts of animals or in anaerobic niches in soil and sediment. The presence of this microorganism in such environments may contribute to the complex microbial communities often found in these habitats, potentially influencing nutrient cycling and the overall health of the ecosystem.↵↵Further research into C. butyricum DORA_1 could illuminate its specific metabolic pathways and interactions within its ecological niche, enhancing our understanding of its role in anaerobic fermentation processes and its potential applications in biotechnology, particularly in the production of biofuels or other fermentation-derived compounds." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium butyricum Positive Anaerobe 1403941 AZLX00000000.1 Bac0006103 Negativicoccus succinicivorans DORA_17_25 "Negativicoccus succinicivorans DORA_17_25 is a notable member of the microbiota due to its unique metabolic capabilities. This bacterium is characterized as a nonsporulating, chemoheterotrophic organism, meaning it derives its energy from organic compounds rather than photosynthesis or inorganic substrates. While specific details on its morphology and cell arrangement remain undefined, its classification indicates potential fascinating structural traits that align with its ecological role. The ecological niche of Negativicoccus succinicivorans DORA_17_25 is particularly intriguing; it thrives in various microenvironments, likely contributing to the degradation of organic matter. Its metabolic processes may play a critical role in biogeochemical cycles, especially in the breakdown of complex organic materials within anaerobic or microaerophilic environments. One of the unique biological insights into Negativicoccus succinicivorans DORA_17_25 lies in its potential symbiotic relationships with other microorganisms. Given its ability to utilize a variety of organic substrates, it may facilitate interspecies interactions, enhancing nutrient availability and promoting community stability. This trait underscores the importance of microbial diversity in ecosystem functionality, where even less-characterized species contribute significantly to the overall health and sustainability of their habitats. The study of such organisms sheds light on the intricate web of life that characterizes microbial ecosystems, emphasizing the need for continuous exploration in microbiology." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Negativicoccus Negativicoccus succinicivorans Gram-negative Cocci No 1 anaerobic Chemoheterotroph Nonsporulating 1403945 AZMC00000000.1 Bac0006104 Streptococcus parasanguinis DORA_23_24 "Streptococcus parasanguinis DORA_23_24 is a Gram-positive cocci bacterium that typically arranges itself in chains or pairs. This strain is nonsporulating and classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. parasanguinis DORA_23_24 is likely to inhabit specific niches within a host organism, potentially contributing to the complex microbial communities present in those environments.↵↵The presence of S. parasanguinis in host-associated habitats may imply a role in symbiotic relationships, possibly influencing host health or microbial balance. Given its facultative anaerobic nature, this strain may be well-adapted to fluctuating oxygen levels, which could be common in various host tissues or microenvironments. This adaptability highlights the potential for S. parasanguinis DORA_23_24 to participate in diverse metabolic processes, potentially affecting the overall dynamics of the microbiome in which it resides. Understanding such interactions may provide insights into the broader ecological roles of Streptococcus species in host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1403947 AZMG00000000.1 Bac0006105 Varibaculum cambriense DORA_20 "Varibaculum cambriense DORA_20 is a Gram-positive bacterium characterized as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions. This versatility in oxygen utilization suggests that V. cambriense DORA_20 may thrive in diverse environments, adapting its metabolic processes according to the availability of oxygen. ↵↵The Gram-positive nature of this microbe implies a thick peptidoglycan layer in its cell wall, which is often associated with certain structural and functional advantages, such as resistance to some environmental stresses. While specific ecological roles and interactions remain to be fully elucidated, the facultative anaerobic metabolism of V. cambriense DORA_20 may allow it to play a significant role in biogeochemical cycles, particularly in environments where oxygen levels fluctuate. This adaptability may also position V. cambriense DORA_20 as a potential player in microbial communities, contributing to the degradation of organic materials or participating in nutrient cycling processes. Further research could provide insights into its ecological significance and potential applications in biotechnology or environmental microbiology." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Varibaculum Varibaculum cambriense Positive Facultative anaerobe 1403948 AZMI00000000.1 Bac0006106 Veillonella dispar DORA_11 "Veillonella dispar DORA_11 is a Gram-negative, anaerobic bacterium that thrives in environments devoid of oxygen. This species belongs to the genus Veillonella, which is known for its role in the human microbiome, particularly within the oral cavity and gastrointestinal tract. As an anaerobe, V. dispar DORA_11 is adapted to fermentative metabolism, utilizing organic compounds in the absence of oxygen to generate energy.↵↵The Gram-negative nature of V. dispar DORA_11 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structural feature may contribute to its survival in anaerobic conditions, as the outer membrane can serve as a protective barrier against environmental stressors.↵↵Veillonella species are recognized for their ability to metabolize lactate and other short-chain fatty acids, which can influence the overall microbial community dynamics in their habitats. This metabolic capability suggests that V. dispar DORA_11 may play a significant role in the degradation of lactate produced by other microorganisms, potentially impacting local nutrient cycling and microbial interactions.↵↵The unique ecological insight into V. dispar DORA_11 lies in its potential contribution to maintaining homeostasis within anaerobic environments, such as the gut. By effectively utilizing lactate, this bacterium may help to modulate the levels of fermentative byproducts, thus influencing the overall health of the microbial ecosystem and possibly the host organism." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella dispar Negative Anaerobe 1403949 AZMJ00000000.1 Bac0006107 Bradyrhizobium cosmicum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium cosmicum 1404864 NC_017082.1 Bac0006108 Escherichia coli ATCC BAA-2209 "Escherichia coli ATCC BAA-2209 is a Gram-negative, rod-shaped bacterium that typically exists in single or paired arrangements. This strain is a facultative anaerobe, meaning it can grow in both aerobic and anaerobic environments, which is characteristic of many E. coli strains. It thrives optimally at a temperature of 37.0°C, aligning with the average body temperature of warm-blooded hosts, suggesting a close association with host organisms.↵↵E. coli ATCC BAA-2209 is categorized as host-associated, indicating its prevalence in the gastrointestinal tracts of various animals, including humans. This habitat is critical for its role in digestion and nutrient absorption, as well as its involvement in the complex microbial ecosystems within the gut. The ability to survive in different oxygen conditions enables this strain to adapt to varying environments within the host, where oxygen levels can fluctuate.↵↵Given its optimal growth temperature and facultative anaerobic nature, E. coli ATCC BAA-2209 exemplifies the adaptability of gut microbiota. This adaptability allows it to play a significant role in maintaining intestinal health and homeostasis, as well as in the fermentation of undigested carbohydrates, contributing to the overall metabolic activities within the host's digestive system. Understanding the traits of this strain can provide insights into its ecological niche and potential applications in biotechnology and microbiome research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1405293 AZBZ00000000.1 Bac0006109 Massilia sp. WF1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. WF1 1406431 LELH00000000.2 Bac0006110 Salinivibrio sp. KP-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Salinivibrio Salinivibrio sp. KP-1 1406902 LAQR00000000.1 Bac0006111 Clostridium botulinum B str. Osaka05 "Clostridium botulinum B str. Osaka05 is a Gram-positive, rod-shaped bacterium that typically arranges itself in pairs, singles, or chains. This strain is an anaerobic microorganism, thriving in environments devoid of oxygen, and exhibits optimal growth at a temperature of 37.0 °C. As a chemoorganotroph, C. botulinum B str. Osaka05 derives its energy from organic compounds, allowing it to inhabit a variety of ecological niches.↵↵This strain's ability to grow in multiple habitats indicates a versatile adaptability, which may contribute to its survival in diverse environments, including those found in soil and decaying organic matter. The unique combination of its anaerobic lifestyle and chemoorganotrophic metabolism suggests that C. botulinum B str. Osaka05 may play a role in nutrient cycling within its ecological niches, particularly in anaerobic decomposition processes. Understanding the traits of this strain can provide insight into its ecological functions and interactions within microbial communities." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1407017 BAUF00000000.1 Bac0006112 Candidatus Nitrosotenuis uzonensis str. N4 Thermoproteati Nitrososphaerota Candidatus Nitrosotenuis Candidatus Nitrosotenuis uzonensis 1407055 CBTY000000000.1 Bac0006113 Acinetobacter sp. TGL-Y2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. TGL-Y2 1407071 NZ_CP015110.1 Bac0006114 Helicobacter pylori BM012S "Helicobacter pylori BM012S is a Gram-negative bacterium characterized by its spirilla shape and presence as single cells. This microbe thrives optimally at a temperature of 37.0°C and exhibits a microaerophilic oxygen requirement, indicating its preference for environments with reduced oxygen levels. H. pylori BM012S is notably host-associated, suggesting a specialized adaptation to the gastric environment of its host organism.↵↵The microaerophilic nature of H. pylori BM012S implies that it may play a role in the complex microbial communities present in the gastrointestinal tract, where oxygen levels are often lower than in the external environment. Its unique spiral morphology may facilitate motility through the viscous gastric mucus, potentially enhancing its ability to colonize the stomach lining. As such, this strain of H. pylori may contribute to the intricate interactions within the host's microbiome, influencing not only its own survival but also the overall health and regulatory mechanisms of the gastric environment. Further research may elucidate its specific ecological roles and interactions with other microbial species in the host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1407463 NC_022911.1 Bac0006115 Halobacterium hubeiense str. JI20-1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium hubeiense 1407499 NZ_LN831303.1 Bac0006116 Glycomyces fuscus str. TRM 49117 Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces fuscus 1407559 NYMS00000000.1 Bac0006117 Lactococcus lactis RTB018 "Lactococcus lactis RTB018 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 40.0°C and exhibits facultative anaerobic growth. This bacterium is notable for its versatility, as it can inhabit a variety of ecological niches, which may contribute to its widespread application in fermentation processes, particularly in dairy products. ↵↵Lactococcus lactis species are well-known for their role in the production of lactic acid, which is critical in food preservation and flavor development. The ability to grow in both aerobic and anaerobic conditions allows L. lactis RTB018 to adapt to diverse environments, potentially enhancing its utility in various biotechnological applications. ↵↵The physiological traits of L. lactis RTB018 suggest a robust adaptability to fluctuating environmental conditions, which could be an advantageous characteristic for its survival in both natural and industrial settings. This adaptability may play a significant role in its function within microbial communities, particularly in the context of food matrices where it can outcompete other microorganisms. As such, further investigation into the ecological interactions of L. lactis RTB018 could yield insights into its contributions to food microbiomes and fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1408188 JCOB00000000.1 Bac0006118 Corynebacterium lactis RW2-5 "Corynebacterium lactis RW2-5 is a Gram-positive, non-spore-forming rod-shaped bacterium. This species is characterized by its distinct morphology and staining properties, which align with the traits commonly observed in the genus Corynebacterium. The Gram-positive nature indicates that the bacterium possesses a thick peptidoglycan layer in its cell wall, which is typical for this group and can influence its environmental resilience and interactions with other microorganisms.↵↵Corynebacterium lactis RW2-5 may play a role in specific ecological niches, particularly in dairy environments, given its association with lactate metabolism. While the strain is not known to form spores, its rod shape suggests potential adaptability in various nutrient-rich substrates, where it may contribute to microbial consortia. Understanding the metabolic capabilities and interactions of C. lactis RW2-5 could provide insights into its function within microbial communities, particularly in fermentation processes involving lactic acid bacteria.↵↵The unique combination of traits in C. lactis RW2-5 suggests its potential utility in biotechnological applications, particularly in dairy fermentation and possibly in the development of probiotic formulations. Further research into its metabolic pathways and interactions with other microorganisms could elucidate its role in specific fermentation environments, enhancing our understanding of its ecological significance." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium lactis Gram-positive rod non-motile non-spore-forming 1408189 NZ_CP006841.1 Bac0006119 Candidatus Endomicrobium trichonymphae str. genomovar Ti2015 Pseudomonadati Elusimicrobiota Endomicrobiia Endomicrobiales Endomicrobiaceae Candidatus Endomicrobiellum Candidatus Endomicrobiellum trichonymphae HostAssociated 1408204 NZ_AP017461.1 Bac0006120 Candidatus Endomicrobium trichonymphae Pseudomonadati Elusimicrobiota Endomicrobiia Endomicrobiales Endomicrobiaceae Candidatus Endomicrobiellum Candidatus Endomicrobiellum trichonymphae HostAssociated 1408204 NC_020421.1 Bac0006121 Candidatus Endomicrobium trichonymphae str. CET450 Pseudomonadati Elusimicrobiota Endomicrobiia Endomicrobiales Endomicrobiaceae Candidatus Endomicrobiellum Candidatus Endomicrobiellum trichonymphae HostAssociated 1408204 LNVX00000000.1 Bac0006122 Sinorhizobium americanum CCGM7 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium americanum 1408224 NZ_CP013051.1 Bac0006123 Vagococcus lutrae LBD1 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus lutrae 1408226 AYSH00000000.1 Bac0006124 Geobacillus thermopakistaniensis "Geobacillus thermopakistaniensis is a rod-shaped bacterium that is part of the genus Geobacillus, known for its thermophilic properties. This microorganism thrives in high-temperature environments, which is characteristic of many members of this genus. The rod shape of G. thermopakistaniensis contributes to its adaptability in extreme thermal conditions, potentially facilitating its motility and nutrient uptake in diverse substrates. ↵↵While specific details regarding its metabolic capabilities and ecological roles remain to be fully characterized, the thermophilic nature of G. thermopakistaniensis suggests its potential involvement in biogeochemical cycles within geothermal habitats. Such environments often feature rich microbial communities that play crucial roles in nutrient recycling and organic matter decomposition. ↵↵Furthermore, the presence of G. thermopakistaniensis in thermally enriched ecosystems could indicate its utility in biotechnological applications, particularly in processes that require high-temperature conditions, such as bioremediation or the production of thermostable enzymes. Understanding the specific environmental niches and interactions of G. thermopakistaniensis may provide insights into its evolutionary adaptations to extreme habitats and its potential contributions to microbial diversity in thermophilic ecosystems." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus thermopakistaniensis Rod 1408282 AYSF00000000.1 Bac0006125 Clostridium botulinum CDC_1436 "Clostridium botulinum CDC_1436 is a Gram-positive, rod-shaped bacterium that exhibits diverse cell arrangements, including singles, pairs, and chains. This microbe thrives optimally at a temperature of 37.0°C and is classified as a chemoorganotroph, deriving energy from organic compounds. Notably, C. botulinum CDC_1436 is an anaerobic organism, indicating that it requires environments devoid of oxygen for growth.↵↵The habitat of C. botulinum CDC_1436 encompasses multiple environments, which may include soil, water, and decaying organic matter. This adaptability to various ecological niches suggests potential interactions with different microbial communities and highlights the organism's role in nutrient cycling within anaerobic environments. The ability to form distinct cellular arrangements may also enhance its survival and competitive capabilities in complex ecosystems.↵↵Furthermore, the physiological traits of C. botulinum CDC_1436 emphasize its ecological versatility and importance in anaerobic habitats, where it may contribute to the degradation of organic material and influence the dynamics of microbial communities. Understanding its traits can provide insights into its ecological functions and the overall microbial diversity within anaerobic environments." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1408283 NZ_CP006909.1 Bac0006126 Borrelia coriaceae ATCC 43381 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia coriaceae 1408429 NZ_CP005745.1 Bac0006127 Clostridium tyrobutyricum DIVETGP Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tyrobutyricum anaerobic 1408889 CBXI000000000.1 Bac0006128 Rhodobacter sp. CACIA14H1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter sp. CACIA14H1 1408890 AYNO00000000.1 Bac0006129 Sunxiuqinia dokdonensis str. DH1 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Sunxiuqinia Sunxiuqinia dokdonensis 1409788 LGIA00000000.1 Bac0006130 uncultured Acidilobus sp. MG Thermoproteati Thermoproteota Thermoprotei Acidilobales Acidilobaceae Acidilobus uncultured Acidilobus sp. MG 1410573 AYMA00000000.1 Bac0006131 uncultured Acidilobus sp. OSP8 Thermoproteati Thermoproteota Thermoprotei Acidilobales Acidilobaceae Acidilobus uncultured Acidilobus sp. OSP8 1410575 AYMC00000000.1 Bac0006132 uncultured Acidilobus sp. JCHS Thermoproteati Thermoproteota Thermoprotei Acidilobales Acidilobaceae Acidilobus uncultured Acidilobus sp. JCHS 1410576 AYMD00000000.1 Bac0006133 Candidatus Nitrosopelagicus brevis str. CN25 Thermoproteati Nitrososphaerota Candidatus Nitrosopelagicus Candidatus Nitrosopelagicus brevis 1410606 NZ_CP007026.1 Bac0006134 Serratia sp. DD3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. DD3 1410619 AYKS00000000.2 Bac0006135 Shinella sp. DD12 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Shinella Shinella sp. DD12 1410620 AYLZ00000000.2 Bac0006136 Enterococcus faecalis PF3 "Enterococcus faecalis PF3 is a Gram-positive coccus that optimally thrives at a temperature of 37.0°C and exhibits chemoorganotrophic metabolism. This facultative anaerobe can utilize various organic compounds for energy, allowing it to adapt to a range of environmental conditions. The organism's ability to grow in multiple habitats underscores its ecological versatility and suggests a role in diverse microbial communities.↵↵As a member of the Enterococcus genus, E. faecalis PF3 can be found in a variety of environments, including the gastrointestinal tracts of humans and other animals, as well as in soil and water. Its facultative anaerobic nature enables it to survive in both aerobic and anaerobic conditions, which may contribute to its prevalence in varied ecological niches.↵↵The adaptability of E. faecalis PF3 to different oxygen levels and its chemoorganotrophic lifestyle highlight its potential significance in organic matter decomposition and nutrient cycling within its habitats. This versatility may also facilitate its interaction with other microbial species, influencing community dynamics and metabolic processes within its ecological context." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1410655 AZIA00000000.1 Bac0006137 Tannerella sp. oral taxon BU063 isolate Cell 5 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella serpentiformis 1410950 AYYC00000000.1 Bac0006138 Hymenobacter mucosus Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter mucosus 1411120 FZNS00000000.1 Bac0006139 Pacificitalea manganoxidans str. DY25 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pacificitalea Pacificitalea manganoxidans 1411902 NZ_CP021407.1 Bac0006140 uncultured archaeon A07HR67 uncultured archaeon A07HR67 1412871 AYLI00000000.1 Bac0006141 uncultured archaeon A07HR60 uncultured archaeon A07HR60 1412874 AYLL00000000.1 Bac0006142 Staphylococcus aureus C0673 "Staphylococcus aureus C0673 is a Gram-positive cocci that typically arranges itself in clusters or singles. This strain is notable for its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. S. aureus C0673 has an optimal growth temperature of 3.0°C, which suggests a potential adaptation to cooler environments, possibly within specific host-associated habitats. ↵↵As a member of the Staphylococcus genus, S. aureus C0673 is likely to be found in close association with various hosts, including humans and animals, where it may play a role in complex microbial communities. The ability to form clusters may facilitate its survival and persistence within these environments, potentially influencing its interactions with host immune responses and other microbial species. ↵↵The unique combination of traits exhibited by S. aureus C0673, particularly its growth at low temperatures and facultative anaerobic capabilities, raises interesting questions about its ecological niche and potential roles in its host environments. This adaptability may allow it to exploit a range of ecological opportunities, contributing to its resilience and versatility as a host-associated microbe." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 1413510 JIZS00000000.1 Bac0006143 Rhodobacter capsulatus Y262 "Rhodobacter capsulatus Y262 is a Gram-negative, rod-shaped bacterium that thrives as a chemoheterotroph, utilizing organic compounds as its energy source. This species is nonsporulating and exhibits a facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its aquatic habitat. The optimal growth temperature for R. capsulatus Y262 is approximately 30°C, reflecting its preference for warm aquatic environments.↵↵As a member of the Rhodobacter genus, this microbe contributes to the microbial diversity found in freshwater ecosystems, where it plays a potential role in nutrient cycling and organic matter degradation. The ability of R. capsulatus Y262 to function in both aerobic and anaerobic conditions may enhance its ecological adaptability, enabling it to thrive in fluctuating environments where oxygen availability can change. This versatility could position R. capsulatus Y262 as an important player in the dynamics of aquatic microbial communities, particularly in environments where organic substrates are abundant and oxygen levels are variable." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter capsulatus Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Aquatic Nonsporulating 1415161 AYQB00000000.1 Bac0006144 Lactococcus cremoris subsp. cremoris GE214 "Lactococcus cremoris subsp. cremoris GE214 is a Gram-positive, nonsporulating coccus that thrives under facultative anaerobic conditions, with an optimal growth temperature of 40.0°C. This strain has been isolated from multiple habitats, indicating its adaptability and potential versatility in various environments. As a member of the Lactococcus genus, it is primarily known for its role in fermentation processes, particularly in dairy production, where it contributes to flavor development and texture in products such as cheese.↵↵The ability of L. cremoris subsp. cremoris GE214 to grow in both aerobic and anaerobic conditions suggests a metabolic flexibility that may enhance its survival and functional capacity in diverse ecological niches. This trait could facilitate its use in industrial applications, where varying oxygen levels may be encountered during fermentation. Understanding the specific metabolic pathways utilized by this microbe under different environmental conditions could provide insights into optimizing its application in food technology and fermentation processes.↵↵Overall, the adaptability of Lactococcus cremoris subsp. cremoris GE214 to multiple habitats, combined with its facultative anaerobic nature, underscores its potential utility in biotechnological applications, particularly in the dairy industry and beyond. Further exploration of its physiological responses to environmental stresses may reveal additional functional capabilities that could be harnessed in microbial fermentation technology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1415168 AZSI00000000.1 Bac0006145 Streptomyces sp. MMG1121 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MMG1121 1415544 LGDV00000000.1 Bac0006146 Streptomyces sp. MMG1533 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MMG1533 1415546 LGDG00000000.1 Bac0006147 Streptomyces sp. WM6378 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WM6378 1415557 LGDD00000000.1 Bac0006148 Streptomyces sp. WM6386 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WM6386 1415558 JXTE00000000.1 Bac0006149 Streptomyces sp. XY332 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. XY332 1415561 LGHN00000000.1 Bac0006150 Streptomyces sp. XY431 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. XY431 1415562 LGDO00000000.1 Bac0006151 Marinobacter sp. LV10R510-11A Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. LV10R510-11A 1415568 NZ_LT907980.1 Bac0006152 Streptococcus pseudopneumoniae 22725 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 1415759 AYRO00000000.1 Bac0006153 Streptococcus pseudopneumoniae 5247 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 1415761 AYRQ00000000.1 Bac0006154 Mycolicibacterium mucogenicum 261Sha1.1M5 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium mucogenicum 1415782 RBIK00000000.1 Bac0006155 Oceanisphaera profunda str. SM1222 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Oceanisphaera Oceanisphaera profunda 1416627 NZ_CP021377.1 Bac0006156 Chryseobacterium geocarposphaerae str. DSM 27617 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium geocarposphaerae 1416776 PGFD00000000.1 Bac0006157 Epilithonimonas zeae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas zeae 1416779 FSRK00000000.1 Bac0006158 Bordetella genomosp. 10 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 10 1416804 NEVM00000000.1 Bac0006159 Natrinema mahii Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema mahii 1416969 JHUT00000000.2 Bac0006160 Paraburkholderia phytofirmans OLGA172 "Paraburkholderia phytofirmans OLGA172 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits obligate aerobic metabolism. This microbe does not undergo sporulation, indicating that it relies on alternative survival strategies in its habitat. The optimal growth temperature for P. phytofirmans OLGA172 is approximately 30.0°C, suggesting a preference for moderate warmth typically found in soil ecosystems. ↵↵As a member of the Burkholderia genus, P. phytofirmans OLGA172 may possess traits that contribute to plant health and soil dynamics, although specific interactions require further investigation. Its aerobic nature implies a potential role in the oxidation of organic compounds in soil, which could influence nutrient cycling and soil fertility. ↵↵This bacterium's adaptation to terrestrial habitats and its aerobic requirements may also play a significant role in its interactions with other soil microorganisms, potentially affecting microbial community structure and function. Further studies could elucidate the ecological roles of P. phytofirmans OLGA172 in different soil types and its potential applications in agricultural microbiology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia phytofirmans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Terrestrial Free living Nonsporulating 1417228 NZ_CP014582.1 Bac0006161 Defluviimonas sp. 20V17 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Albidovulum Defluviimonas sp. 20V17 1417296 AYXI00000000.1 Bac0006162 Haloarcula hispanica N601 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula hispanica 1417673 NC_023010.2 Bac0006163 Escherichia coli LAU-EC10 "Escherichia coli LAU-EC10 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which corresponds to the normal body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli LAU-EC10 is classified as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen, a trait that enhances its versatility in various environments, particularly within the gastrointestinal tract of its hosts.↵↵The facultative anaerobic nature of E. coli LAU-EC10 suggests that it can efficiently utilize different metabolic pathways depending on oxygen availability, thus playing a potentially significant role in the microbial ecology of its host. This adaptability may facilitate its survival and proliferation in diverse microenvironments within the host, contributing to the complex interplay of microbial communities. Furthermore, the rod shape and specific cell arrangement of this strain may influence its motility and interaction with the host environment, potentially affecting its ecological niche within the gut microbiome. Understanding these traits can provide insights into the ecological roles of E. coli strains like LAU-EC10 in health and disease contexts, as they are integral to the dynamics of microbial populations in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1417796 AYNJ00000000.1 Bac0006164 Bacillus thuringiensis LM1212 "Bacillus thuringiensis LM1212 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to survive in various environmental conditions. This microbe is classified as a facultative anaerobe, indicating that it can grow in both the presence and absence of oxygen, making it adaptable to diverse habitats. Notably, B. thuringiensis LM1212 is host-associated, suggesting a potential relationship with specific hosts, which may influence its ecological roles and interactions within microbial communities.↵↵The ability to form spores is a significant trait that enhances its resilience, enabling the bacterium to endure unfavorable environmental conditions, such as nutrient deprivation or desiccation. This trait is particularly advantageous in fluctuating habitats where it may find itself in association with host organisms, potentially facilitating its survival and proliferation.↵↵Given its host-associated nature, Bacillus thuringiensis LM1212 may play a role in the microbial dynamics of its environment, potentially influencing the health and microbial diversity of the host it associates with. The interaction between B. thuringiensis LM1212 and its host could provide insights into symbiotic relationships in microbial ecosystems, shedding light on the complex interdependencies that exist in nature." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1417985 NZ_CP024775.1 Bac0006165 Xanthomonas arboricola pv. pruni MAFF 301420 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 1418095 BAVC00000000.1 Bac0006166 Pseudomonas mandelii PD30 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mandelii 1419583 AZQQ00000000.1 Bac0006167 Streptococcus sp. VT 162 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. VT 162 1419814 CP007628.2 Bac0006168 Klebsiella pneumoniae 30684/NJST258_2 "Klebsiella pneumoniae strain 30684/NJST258_2 is a Gram-negative, nonsporulating rod-shaped bacterium that typically resides in host-associated environments. This microbe is characterized by its ability to form chains, pairs, and singles, reflecting a versatile arrangement that may facilitate its survival in diverse conditions. Optimal growth occurs at 37.0°C, which aligns with many mammalian host temperatures, further underscoring its association with living organisms.↵↵As a chemoheterotroph, K. pneumoniae 30684/NJST258_2 derives its energy from organic compounds, a trait that complements its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This adaptability may contribute to its ecological resilience, enabling it to occupy a range of niches within host organisms.↵↵The integration of these traits suggests that K. pneumoniae 30684/NJST258_2 has developed mechanisms for efficiently exploiting host resources while maintaining the flexibility to adapt to varying oxygen levels. Such characteristics may enhance its ability to persist in dynamic host-associated habitats, highlighting the potential significance of this strain within microbial communities and its interactions with host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1420013 NZ_CP006919.1 Bac0006169 Novosphingobium barchaimii str. NS277 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium barchaimii 1420591 LDRW00000000.1 Bac0006170 Methyloprofundus sedimenti str. WF1 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methyloprofundus Methyloprofundus sedimenti 1420851 LPUF00000000.1 Bac0006171 Mesotoga sp. H07.pep.5.3 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp. H07.pep.5.3 1421003 AYTV00000000.1 Bac0006172 Thermoanaerobacterium aotearoense SCUT27 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium aotearoense anaerobic 1421016 AYSN00000000.1 Bac0006173 Gordonia alkanivorans CGMCC 6845 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia alkanivorans 1423140 AYXO00000000.1 Bac0006174 Bacillus thuringiensis Bt18247 "Bacillus thuringiensis strain Bt18247 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a facultative anaerobe. This strain is typically found in host-associated environments, indicating its potential symbiotic or parasitic relationships within specific ecological niches. ↵↵As a member of the Bacillus genus, Bt18247 forms endospores, a trait that enhances its survival in fluctuating environmental conditions. The ability to sporulate may also play a role in its dissemination and colonization strategies within its host-associated habitats. The facultative anaerobic nature of this strain suggests that it can thrive in both aerobic and anaerobic environments, providing it with a versatile metabolic capacity that may facilitate its adaptation to various ecological contexts.↵↵The ecological implications of Bacillus thuringiensis Bt18247's traits may extend to its interactions with host organisms, potentially influencing microbial community dynamics and nutrient cycling within its habitat. Understanding the specific roles and functions of this strain in its environment may provide insights into its contributions to microbial diversity and ecosystem stability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1423143 NZ_CP015253.1 Bac0006175 Phaeobacter gallaeciensis DSM 26640 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter gallaeciensis 1423144 NC_023137.1 Bac0006176 Bacillus sp. SJS Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. SJS 1423321 JAQV00000000.2 Bac0006177 Lactobacillus acetotolerans DSM 20749 = JCM 3825 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acetotolerans 1423714 AYZC00000000.1 Bac0006178 Dellaglioa algida DSM 15638 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Dellaglioa Dellaglioa algida 1423719 AZDI00000000.1 Bac0006179 Liquorilactobacillus aquaticus DSM 21051 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus aquaticus 1423725 AYZD00000000.1 Bac0006180 Loigolactobacillus bifermentans DSM 20003 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus bifermentans 1423726 AZDA00000000.1 Bac0006181 Lacticaseibacillus brantae DSM 23927 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus brantae 1423727 AYZQ00000000.1 Bac0006182 Lacticaseibacillus camelliae DSM 22697 = JCM 13995 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus camelliae 1423730 AYZJ00000000.1 Bac0006183 Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 "Lacticaseibacillus casei DSM 20011 (also known as JCM 1134 and ATCC 393) is a Gram-positive, rod-shaped bacterium that typically forms chains. This organism is classified as a facultative anaerobe, allowing it to thrive in environments with or without oxygen. Lacticaseibacillus casei DSM 20011 exhibits optimal growth at a temperature of 30.0°C, indicating its adaptation to specialized habitats that may be found in fermented foods or specific ecological niches where such temperature conditions are prevalent.↵↵The capacity of Lacticaseibacillus casei to grow in both aerobic and anaerobic conditions enhances its versatility and potential utility in various biotechnological applications, particularly in the production of fermented dairy products. Its chain formation may contribute to its functional properties in food matrices, potentially influencing texture and flavor development during fermentation. The specialized habitat of Lacticaseibacillus casei suggests that it may play a role in particular microbial communities where it could interact with other microorganisms, contributing to the stability and diversity of these communities.↵↵In summary, Lacticaseibacillus casei DSM 20011 is a versatile and adaptive bacterium with significant implications for food production and microbial ecology, highlighting its importance in the maintenance of specific habitats and interactions within microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains 1423732 NZ_AP012546.1 Bac0006184 Lapidilactobacillus concavus DSM 17758 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lapidilactobacillus Lapidilactobacillus concavus 1423735 AZFX00000000.1 Bac0006185 Lapidilactobacillus dextrinicus DSM 20335 "Lapidilactobacillus dextrinicus DSM 20335 is a Gram-positive, rod-shaped bacterium classified within the Lactobacillaceae family. This microbe exhibits a characteristic rod morphology, which is typical of many lactic acid bacteria. As a member of the Lactobacillus genus, L. dextrinicus is likely involved in the fermentation of carbohydrates, a process central to its metabolic activity. ↵↵L. dextrinicus has been isolated and designated with the strain number DSM 20335, indicating its availability in culture collections for research and industrial applications. While specific metabolic capabilities and ecological niche are not detailed here, its classification suggests potential roles in food fermentation and probiotic applications, which are common among related species. The Gram-positive nature of this organism implies that it possesses a thick peptidoglycan layer, contributing to its structural integrity and resilience in various environments.↵↵Given its classification and traits, L. dextrinicus could play a significant role in carbohydrate fermentation processes, particularly in environments where polysaccharides are abundant. This may include various food matrices where complex carbohydrates are present, suggesting its potential utility in enhancing the nutritional and sensory properties of fermented products. Further investigation into its metabolic pathways and interactions within microbial communities may elucidate its specific contributions to fermentation and health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lapidilactobacillus Lapidilactobacillus dextrinicus Positive Rod 1423738 AYYK00000000.1 Bac0006186 Ligilactobacillus equi DSM 15833 = JCM 10991 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus equi 1423740 AZFH00000000.1 Bac0006187 Lentilactobacillus farraginis DSM 18382 = JCM 14108 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus farraginis 1423743 AZFY00000000.1 Bac0006188 Holzapfeliella floricola DSM 23037 = JCM 16512 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Holzapfeliella Holzapfeliella floricola 1423744 AYZL00000000.1 Bac0006189 Limosilactobacillus frumenti DSM 13145 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus frumenti 1423746 AZER00000000.1 Bac0006190 Lactobacillus gallinarum DSM 10532 = JCM 2011 "Lactobacillus gallinarum DSM 10532 (also known as JCM 2011) is a Gram-positive, rod-shaped bacterium belonging to the genus Lactobacillus. This species is notable for its role in various fermentation processes, particularly in the production of lactic acid. As a member of the lactic acid bacteria (LAB) group, L. gallinarum is characterized by its ability to ferment carbohydrates, leading to the accumulation of lactic acid as a primary metabolic end product.↵↵The rod shape of L. gallinarum is typical for many Lactobacillus species, which often exhibit diverse morphologies but predominantly display straight or slightly curved rods under microscopic examination. The Gram-positive nature of this bacterium indicates a thick peptidoglycan layer in its cell wall, a feature that contributes to its resilience in various environmental conditions.↵↵Lactobacillus gallinarum has potential implications in food science, particularly in the development of fermented foods, where it may contribute to flavor development and preservation. Additionally, its metabolic activity can influence the overall microbial community dynamics in fermentation systems. The specific characteristics of L. gallinarum suggest that it may play a role in the microbiota of certain animal hosts, potentially influencing gut health and fermentation processes in the digestive tracts of poultry. This insight emphasizes the importance of Lactobacillus species in both industrial fermentation and the natural microbiomes of animals." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gallinarum Positive Rod 1423748 AZEL00000000.1 Bac0006191 Levilactobacillus hammesii DSM 16381 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus hammesii 1423753 AZFS00000000.1 Bac0006192 Lactobacillus hominis DSM 23910 = CRBIP 24.179 "Lactobacillus hominis DSM 23910, also designated as CRBIP 24.179, is a Gram-positive, rod-shaped bacterium that is characterized by its inability to form spores. This species thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions typically found in the human body, particularly in the gastrointestinal tract. ↵↵As a member of the genus Lactobacillus, L. hominis is likely involved in the fermentation of carbohydrates, contributing to the production of lactic acid. This metabolic process is significant for maintaining a low pH in its environment, which can inhibit the growth of pathogenic microorganisms. The non-spore-forming nature of L. hominis suggests that it relies on other survival strategies, such as rapid growth and efficient metabolic pathways, to persist in its ecological niche.↵↵The optimal growth temperature of 37.0°C indicates that L. hominis is well-adapted to human-associated environments, supporting its role as a commensal organism. Its presence may be integral to the maintenance of a balanced microbiota, influencing gut health and potentially providing benefits through the modulation of the host's immune response. The specific interactions of L. hominis with other microbial inhabitants and its contribution to the overall health of the gastrointestinal ecosystem warrant further investigation, particularly in the context of probiotics and their therapeutic potential." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus hominis Gram-positive rod non-motile 37 mesophilic non-spore-forming 1423758 CAKE00000000.1 Bac0006193 Companilactobacillus kimchii DSM 13961 = JCM 10707 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus kimchii 1423765 AZDH00000000.1 Bac0006194 Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus manihotivorans 1423769 AZEU00000000.1 Bac0006195 Limosilactobacillus mucosae DSM 13345 "Limosilactobacillus mucosae DSM 13345 is a Gram-positive, nonsporulating rod-shaped bacterium that typically arranges itself in chains. This microbe is classified as a facultative anaerobe, allowing it to thrive in various oxygen conditions, and exhibits optimal growth at a temperature of 37.0°C. As a chemoheterotroph, L. mucosae DSM 13345 utilizes organic compounds as its energy source, reflecting its adaptation to its habitat within the intestinal microflora of animals.↵↵The presence of L. mucosae in the gut microbiota highlights its potential role in maintaining intestinal health and contributing to the complex ecosystem of gut microorganisms. Its ability to grow in anaerobic environments, coupled with its chain-forming morphology, may facilitate interactions with other microbial species and host tissues, potentially influencing digestive processes and immune responses. Further studies could elucidate the specific functions and benefits of Limosilactobacillus mucosae within its ecological niche, particularly in relation to host health and microbial community dynamics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus mucosae Positive Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Chains Nonsporulating 1423771 AZEQ00000000.1 Bac0006196 Ligilactobacillus murinus DSM 20452 = NBRC 14221 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus murinus 1423772 AYYN00000000.1 Bac0006197 Schleiferilactobacillus odoratitofui DSM 19909 = JCM 15043 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus odoratitofui 1423776 AZEE00000000.1 Bac0006198 Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus oligofermentans 1423778 AZFE00000000.1 Bac0006199 Apilactobacillus ozensis DSM 23829 = JCM 17196 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus ozensis 1423781 AYYQ00000000.1 Bac0006200 Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus paracollinoides 1423785 AZFD00000000.1 Bac0006201 Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 "Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 is a rod-shaped bacterium belonging to the genus Lentilactobacillus. This species is characterized by its distinctive morphological features, primarily its elongated, cylindrical cell shape, which is typical of many lactobacilli. While specific metabolic and biochemical traits are not detailed, members of the Lentilactobacillus genus are generally known for their role in fermentation processes and contribution to food production.↵↵The genus Lentilactobacillus is part of the lactic acid bacteria (LAB), which are renowned for their ability to ferment sugars into lactic acid. This metabolic pathway is crucial in various applications, including the preservation of food and the development of flavor profiles in fermented products. As with other Lactobacillus species, it is likely that Lentilactobacillus parafarraginis may play a beneficial role in gut health, although specific health implications or probiotic functions have not been established for this strain.↵↵The ecological role of Lentilactobacillus parafarraginis may be particularly significant in environments where fermentation occurs, such as in dairy products or plant-based substrates. Understanding its specific interactions within these ecosystems could provide insights into its potential applications in food biotechnology and fermentation science, highlighting the importance of rod-shaped lactic acid bacteria in diverse microbial communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus parafarraginis Rod 1423786 AZFZ00000000.1 Bac0006202 Lactiplantibacillus paraplantarum DSM 10667 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus paraplantarum 1423789 AZEO00000000.1 Bac0006203 Schleiferilactobacillus perolens DSM 12744 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Schleiferilactobacillus Schleiferilactobacillus perolens 1423792 AZEC00000000.1 Bac0006204 Limosilactobacillus pontis DSM 8475 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus pontis 1423794 AZGO00000000.1 Bac0006205 Loigolactobacillus rennini DSM 20253 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus rennini 1423796 AYYI00000000.1 Bac0006206 Ligilactobacillus salivarius DSM 20555 = ATCC 11741 "Ligilactobacillus salivarius DSM 20555 (ATCC 11741) is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic metabolism and is nonsporulating. This species is notably host-associated, indicating its prevalence in specific biological environments, likely including the gastrointestinal tracts of various hosts. ↵↵As a member of the lactic acid bacteria, Ligilactobacillus salivarius is expected to play a role in the fermentation of carbohydrates, contributing to the production of lactic acid, which can influence the microbial balance within its host. The facultative anaerobic nature of this microbe suggests it can adapt to varying oxygen levels, which may be advantageous in diverse host environments where oxygen availability fluctuates.↵↵Given its host-associated habitat, Ligilactobacillus salivarius may engage in symbiotic interactions with its host, potentially aiding in digestion or modulating the gut microbiome. Further research into its specific interactions and metabolic contributions could provide deeper insights into its role in host health and the overall microbial ecosystem." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1423799 ACGT00000000.1 Bac0006207 Schleiferilactobacillus similis DSM 23365 = JCM 2765 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus similis 1423804 AYZM00000000.1 Bac0006208 Liquorilactobacillus sucicola DSM 21376 = JCM 15457 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus sucicola 1423806 AYZF00000000.1 Bac0006209 Paucilactobacillus suebicus DSM 5007 = KCTC 3549 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus suebicus 1423807 AZGF00000000.1 Bac0006210 Liquorilactobacillus uvarum DSM 19971 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus uvarum 1423812 AZEG00000000.1 Bac0006211 Lacticaseibacillus zeae DSM 20178 = KCTC 3804 "Lacticaseibacillus zeae DSM 20178 (also known as KCTC 3804) is a Gram-positive, rod-shaped bacterium belonging to the genus Lacticaseibacillus. As a member of the lactic acid bacteria (LAB), this organism is recognized for its role in the fermentation processes, which are essential for various food products and the maintenance of gut health in humans and animals. ↵↵The rod shape of Lacticaseibacillus zeae is characteristic of many LAB, contributing to its adaptability in diverse environments. Gram-positive bacteria like Lacticaseibacillus zeae possess a thick peptidoglycan layer in their cell wall, which is integral to their structural integrity and resistance to certain environmental stresses. This structural feature may also play a role in their ability to thrive in fermented foods, where acidity and other microbial challenges are prevalent.↵↵The metabolic capabilities of Lacticaseibacillus zeae are likely to be associated with lactic acid production, which can lower pH and create an environment that inhibits spoilage organisms and pathogens in food systems. Furthermore, the presence of Lacticaseibacillus zeae in various fermentation processes suggests a potential for probiotic applications, contributing to the health benefits attributed to LAB. ↵↵Overall, the unique attributes of Lacticaseibacillus zeae, particularly its rod shape and Gram-positive nature, enhance its functional role in fermentation and suggest its importance in both food preservation and gut microbiota modulation." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus zeae Positive Rod 1423816 AZCT00000000.1 Bac0006212 Levilactobacillus zymae DSM 19395 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus zymae 1423817 AZDW00000000.1 Bac0006213 Levilactobacillus koreensis JCM 16448 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus koreensis 1423819 AZDP00000000.1 Bac0006214 Ligilactobacillus aviarius subsp. aviarius DSM 20655 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus aviarius 1423821 AYZA00000000.1 Bac0006215 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 "Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 is a rod-shaped bacterium recognized for its distinct morphological characteristics. This subspecies belongs to the genus Loigolactobacillus, which is known for its role in the fermentation process. The rod shape of L. coryniformis subsp. torquens suggests an adaptation that may contribute to its survival and metabolism within specific environments, particularly those rich in fermentable substrates.↵↵The strain DSM 20004 has been cataloged in microbial culture collections, indicating its potential for further study and application. As part of the broader Lactobacillus group, L. coryniformis subsp. torquens may possess beneficial traits associated with lactic acid production, which could play a role in food preservation and probiotic applications. The precise metabolic pathways and fermentation capabilities of this subspecies remain subjects of interest, as they may differ from closely related strains.↵↵Understanding the traits of L. coryniformis subsp. torquens, particularly its rod shape, can offer insights into its ecological interactions and functional roles in microbial communities. This morphological characteristic may enhance nutrient acquisition and facilitate colonization in diverse environments, highlighting the importance of structural adaptations in microbial ecology. Further research could elucidate the specific ecological niches occupied by this subspecies and its contributions to fermentation processes in various habitats." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus coryniformis Rod 1423822 NZ_CP017700.1 Bac0006216 Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 "Lactobacillus delbrueckii subsp. delbrueckii DSM 20074, also known as JCM 1012, is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It has an optimal growth temperature of 42.0°C, suggesting a preference for warmer conditions that may be encountered in specific habitats.↵↵L. delbrueckii subsp. delbrueckii is primarily found in a variety of natural environments, indicating its versatile ecological adaptability. This species is known for its role in the fermentation processes of dairy products, where it contributes to the production of lactic acid. The ability to ferment sugars under varying oxygen levels enhances its utility in diverse fermentation contexts, making it a key player in food microbiology.↵↵The ecological significance of L. delbrueckii subsp. delbrueckii extends beyond food production, as its presence in multiple habitats suggests a potential role in maintaining microbial balance and influencing the dynamics of microbial communities. This adaptability underscores the importance of Lactobacillus species in both industrial applications and natural ecosystems, highlighting their contribution to biogeochemical cycles and microbial interactions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1423823 AZCR00000000.1 Bac0006217 Ehrlichia muris AS145 str. AS154 "Ehrlichia muris AS145 str. AS154 is a Gram-negative spherical bacterium belonging to the genus Ehrlichia. This microbe is characterized by its distinctive morphology, exhibiting a spherical shape that is typical of many members within its taxonomic group. As a Gram-negative organism, E. muris AS145 str. AS154 possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark feature that influences its interaction with the environment and host organisms.↵↵While specific pathogenicity and ecological roles of E. muris AS145 str. AS154 are not detailed here, the genus Ehrlichia is known for its associations with various animal hosts and, in some cases, its role in tick-borne diseases. The Gram-negative nature of this bacterium suggests that it may have specific adaptations for survival and transmission within its environment, potentially involving interactions with vector organisms such as ticks. ↵↵The spherical shape of E. muris AS145 str. AS154 may confer advantages in terms of nutrient uptake and resistance to environmental stressors, which can be critical for survival in diverse habitats. Understanding the morphological and structural traits of this microbe can provide insights into its biology and potential interactions within ecosystems, highlighting the importance of further research into its ecological significance and potential roles in microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia muris Gram-negative sphere non-motile 1423892 NC_023063.1 Bac0006218 Geosporobacter ferrireducens str. IRF9 Bacillati Bacillota Clostridia Peptostreptococcales Thermotaleaceae Geosporobacter Geosporobacter ferrireducens 1424294 NZ_CP017270.1 Bac0006219 Cryobacterium luteum "Cryobacterium luteum is a Gram-positive, aerobic bacterium characterized by its rod-shaped morphology. This microbe is notable for its ability to thrive in environments where oxygen is readily available, which suggests an adaptation to aerobic conditions. The Gram-positive nature of Cryobacterium luteum indicates a thick peptidoglycan layer in its cell wall, which is a common feature among this group of bacteria, contributing to their structural integrity and influence on staining properties.↵↵As an aerobic organism, Cryobacterium luteum likely engages in aerobic respiration, utilizing oxygen as the terminal electron acceptor in its metabolic processes. This metabolic pathway allows for the efficient extraction of energy from organic substrates, which may play a critical role in its survival and growth in oxygen-rich environments. ↵↵Furthermore, the traits of Cryobacterium luteum may suggest a potential involvement in biogeochemical cycles, particularly in the degradation of organic matter in aerobic ecosystems. The specific ecological niche it occupies, whether in soil or other environments, could influence microbial interactions and nutrient cycling processes. Understanding the characteristics of Cryobacterium luteum may provide insights into its role within microbial communities and its contributions to ecosystem dynamics, particularly in contexts where aerobic conditions prevail." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium luteum Gram-positive rod aerobic 1424661 FOCN00000000.1 Bac0006220 Chlamydia pecorum DBDeUG Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia pecorum 1427370 NZ_CM002308.1 Bac0006221 Marinitoga sp. 1197 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga sp. 1197 1428449 AZAY00000000.1 Bac0006222 Clostridium beijerinckii NRRL B-598 "Clostridium beijerinckii NRRL B-598 is a Gram-positive, rod-shaped bacterium characterized by its arrangement in pairs or as singles. This anaerobic microbe utilizes organic compounds as a chemoorganotrophic energy source, reflecting its adaptation to environments where oxygen is limited. C. beijerinckii NRRL B-598 is commonly found in freshwater habitats and soil, indicating its potential role in various terrestrial and aquatic ecosystems.↵↵The anaerobic nature of C. beijerinckii NRRL B-598 suggests that it may contribute to the fermentation processes within its environments, potentially influencing nutrient cycling and organic matter decomposition. Its ability to thrive in anaerobic conditions positions it as an important player in the microbially-mediated transformations of organic substrates in its natural habitats. Understanding the ecological roles of such anaerobic bacteria can provide insights into their contributions to soil health and aquatic ecosystem dynamics." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1428454 NZ_CP011966.3 Bac0006223 Streptomyces mangrovisoli str. MUSC 149 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces mangrovisoli 1428628 LAVA00000000.2 Bac0006224 Candidatus Entotheonella gemina str. TSY2 Pseudomonadati Candidatus Tectimicrobiota Candidatus Entotheonellia Candidatus Entotheonellales Candidatus Entotheonellaceae Candidatus Entotheonella Candidatus Entotheonella gemina 1429439 AZHX00000000.1 Bac0006225 Leuconostoc mesenteroides P45 "Leuconostoc mesenteroides P45 is a Gram-positive cocci bacterium that commonly occurs in various habitats, exhibiting versatile growth patterns as it can be found in singles, chains, and pairs. This strain thrives optimally at a temperature of 20.0°C and demonstrates facultative anaerobic characteristics, allowing it to adapt to both aerobic and anaerobic environments. ↵↵Leuconostoc mesenteroides species are often associated with fermentation processes, particularly in the production of lactic acid, and they play a significant role in the food industry, especially in the fermentation of vegetables and dairy products. The ability of L. mesenteroides P45 to grow in diverse conditions highlights its ecological versatility, suggesting potential applications in food preservation and probiotic development. Furthermore, its ability to form chains may facilitate cell-to-cell communication and cooperative behaviors, which could enhance its survival and functionality in complex microbial communities. This adaptability underscores the importance of L. mesenteroides P45 in both natural ecosystems and industrial applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc mesenteroides Positive Cocci No 1 1 Facultative anaerobe 20 Mesophilic Multiple Free living Singles - Chains - Pairs 1429888 JRGZ00000000.1 Bac0006226 Methylibium sp. T29 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Methylibium Methylibium sp. T29 1430884 AZND00000000.1 Bac0006227 Bacillus thuringiensis DB27 "Bacillus thuringiensis DB27 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as a facultative anaerobe. This microbe is typically found in host-associated habitats, indicating a potential relationship with various organisms within its ecological niche. The ability to form spores suggests that B. thuringiensis DB27 can endure unfavorable environmental conditions, enhancing its survival and potential for persistence in diverse environments.↵↵As a member of the Bacillus genus, B. thuringiensis is known for its production of insecticidal proteins, which may contribute to its ecological role in regulating pest populations, although strain-specific characteristics are not defined in the provided data. The facultative anaerobic nature of this bacterium allows it to thrive in both oxygen-rich and oxygen-depleted environments, suggesting versatility in its metabolic pathways and habitat preferences.↵↵The host-associated lifestyle of B. thuringiensis DB27 implies that it may engage in interactions with its host organisms, potentially influencing microbial community dynamics or host health. This interplay highlights the importance of understanding the ecological roles of microbial species within their respective environments. Further investigation into the specific hosts and interactions of B. thuringiensis DB27 could provide valuable insights into its functional contributions within microbial consortia and ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1431339 CBXL000000000.1 Bac0006228 Rhizobium etli bv. mimosae str. IE4771 "Rhizobium etli bv. mimosae str. IE4771 is a Gram-negative, rod-shaped bacterium that typically exists in a single-cell arrangement and is classified as an aerobic organism. This strain is notably host-associated, suggesting a symbiotic relationship with specific plant hosts, which is characteristic of many members within the Rhizobium genus. ↵↵As an aerobe, R. etli bv. mimosae str. IE4771 requires oxygen for its metabolic processes, which aligns with its ecological role in the rhizosphere, where it can contribute to nitrogen fixation in association with leguminous plants. This nitrogen-fixing capability is crucial for improving soil fertility and fostering plant growth, particularly in agricultural systems reliant on legume-crop rotations. ↵↵The host-associated nature of this strain highlights its potential importance in sustainable agriculture, as it may enhance nutrient availability and promote healthier crop yields, thereby reducing the need for synthetic fertilizers. Understanding the specific interactions of R. etli bv. mimosae str. IE4771 with its plant hosts could provide insights into optimizing symbiotic relationships for agricultural benefit, particularly in regions where soil nitrogen levels are limiting factors for crop production." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Singles 1432050 NZ_CP006986.1 Bac0006229 Eisenbergiella tayi Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eisenbergiella Eisenbergiella tayi anaerobic rumen 1432052 MCGI00000000.1 Bac0006230 Mannheimia sp. USDA-ARS-USMARC-1261 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia sp. USDA-ARS-USMARC-1261 microaerophile 1432056 NZ_CP006942.1 Bac0006231 Dehalococcoides mccartyi CG1 "Dehalococcoides mccartyi CG1 is a Gram-positive, coccoid bacterium characterized by its single-cell arrangement and chemolithotrophic metabolism. This anaerobic microbe thrives optimally at a temperature of 35.0°C and exhibits a versatile habitat, indicating its ability to inhabit diverse environments. As a chemolithotroph, D. mccartyi CG1 derives energy through the oxidation of inorganic compounds, which enables it to play a significant role in biogeochemical cycles, particularly in the reduction of halogenated compounds. ↵↵The isolation of D. mccartyi CG1 highlights its importance in bioremediation processes, where it is known to contribute to the detoxification of chlorinated solvents in anaerobic environments. Its unique metabolic capabilities suggest that this strain may be particularly effective in environments where organohalides are present, thereby mitigating the environmental impacts of these pollutants. Understanding the physiological traits and ecological roles of D. mccartyi CG1 can provide valuable insights into its potential applications in sustainable environmental management and bioremediation strategies." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi Positive Cocci No 1 1 Anaerobe 35 Chemolithotroph Mesophilic Multiple Free living Singles 1432059 NZ_CP006949.1 Bac0006232 Klebsiella pneumoniae IS43 "Klebsiella pneumoniae IS43 is a nonsporulating, Gram-negative bacterium characterized by its rod-shaped morphology and varied cell arrangement, which includes chains, pairs, and singles. This microbe thrives optimally at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting a close association with host environments. As a facultative anaerobe, K. pneumoniae IS43 can adapt to both aerobic and anaerobic conditions, allowing it to exploit a range of host-associated habitats. ↵↵K. pneumoniae IS43 is classified as a chemoheterotroph, meaning it derives its energy and carbon from organic compounds, a trait that underscores its potential metabolic versatility in nutrient-rich environments, particularly within the host. The presence of this bacterium in host-associated habitats may indicate its role in the complex microbial communities that inhabit those environments. ↵↵Understanding the ecological context of K. pneumoniae IS43 can provide insights into its interactions within the host microbiome, potentially influencing host health and disease outcomes. This adaptability and metabolic capacity may also contribute to its persistence in various niches, highlighting the importance of studying such microorganisms in relation to their ecological roles and implications for host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1432552 CBWK000000000.1 Bac0006233 Escherichia coli ISC7 "Escherichia coli ISC7 is a Gram-negative, rod-shaped bacterium typically found in host-associated environments. This microbe can be observed in various arrangements, including pairs and singles, reflecting its capacity for diverse growth patterns. E. coli ISC7 thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵As a facultative anaerobe, E. coli ISC7 possesses the metabolic versatility to grow in both aerobic and anaerobic conditions. This trait facilitates its survival in a range of environments, including the intestinal tract of mammals, where oxygen levels can fluctuate significantly. The ability to switch between aerobic respiration and fermentation allows E. coli ISC7 to efficiently utilize available nutrients and adapt to changing conditions within its host.↵↵The ecological significance of E. coli ISC7 may extend beyond mere survival; its presence in host-associated environments suggests potential roles in nutrient cycling and gut microbiota dynamics. Moreover, the adaptability of E. coli ISC7 to various oxygen levels may also contribute to its interactions with other microbial communities, influencing overall microbial diversity and stability in its ecological niche. Further investigation into these interactions could provide insights into the broader ecological roles of E. coli strains within host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1432555 CBWN000000000.1 Bac0006234 Klebsiella pneumoniae ISC21 "Klebsiella pneumoniae ISC21 is a Gram-negative, rod-shaped bacterium that typically occurs in chains, pairs, or as single cells, demonstrating a versatile arrangement that may adapt to its host-associated habitat. This strain is nonsporulating, indicating that it does not form spores under environmental stress, which may influence its survival strategies within the host. K. pneumoniae ISC21 is classified as a chemoheterotroph, relying on organic compounds for energy and carbon, which is consistent with its association with host organisms. ↵↵It thrives optimally at 37.0°C, reflecting its adaptation to the physiological conditions of warm-blooded hosts. As a facultative anaerobe, K. pneumoniae ISC21 can grow in both the presence and absence of oxygen, allowing it to exploit a variety of niches within the host environment where oxygen levels may fluctuate. ↵↵The ecological role of K. pneumoniae ISC21 may involve interactions with the host microbiome, potentially contributing to nutrient cycling or influencing host health. Its adaptability to varying oxygen levels and its dependency on organic matter for energy suggest that it could play a significant role in the microbial dynamics of host-associated environments, particularly in cases where its metabolic capabilities overlap with those of other gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1432558 CBWQ000000000.1 Bac0006235 Salinicoccus sediminis str. SV-16 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Salinicoccus Salinicoccus sediminis 1432562 LAYZ00000000.1 Bac0006236 Rhodococcus sp. BUPNP1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. BUPNP1 1432786 NERM00000000.1 Bac0006237 Streptococcus cuniculi Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cuniculi microaerophile 1432788 MSJM00000000.1 Bac0006238 Mannheimia varigena USDA-ARS-USMARC-1296 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia varigena 1433287 NZ_CP006943.1 Bac0006239 Streptococcus thermophilus M17PTZA496 "Streptococcus thermophilus M17PTZA496 is a Gram-positive bacterium characterized by its cocci shape, typically arranged in chains or pairs. This strain thrives optimally at a temperature of 45.0°C, indicating its preference for thermophilic conditions, which is a notable trait within its genus. As an anaerobe, S. thermophilus M17PTZA496 does not require oxygen for growth, suggesting adaptations that allow it to flourish in environments where oxygen levels are low or absent.↵↵The species S. thermophilus is commonly found in diverse habitats, particularly in dairy products, where it plays a significant role in fermentation processes. The specific strain M17PTZA496 could be particularly interesting for applications in food microbiology and biotechnology, given its thermal preference and anaerobic metabolism. The ability of this strain to function effectively at elevated temperatures may enhance its utility in industrial fermentation systems that operate under such conditions, thereby potentially improving yield and efficiency in dairy fermentation processes.↵↵Overall, the unique combination of traits exhibited by Streptococcus thermophilus M17PTZA496 highlights its potential as a beneficial organism in thermophilic applications, providing insights into the adaptation mechanisms of microorganisms in high-temperature environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1433289 AZJT00000000.1 Bac0006240 Methanosarcina sp. Kolksee Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. Kolksee 1434099 NZ_CP009523.1 Bac0006241 Methanosarcina sp. MTP4 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. MTP4 1434100 NZ_CP009505.1 Bac0006242 Methanosarcina horonobensis HB-1 = JCM 15518 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina horonobensis 1434110 NZ_CP009516.1 Bac0006243 Methanosarcina lacustris Z-7289 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina lacustris 1434111 NZ_CP009515.1 Bac0006244 Methanosarcina mazei LYC "Methanosarcina mazei LYC is a cocci-shaped, nonsporulating methanogenic archaeon that thrives in anaerobic environments. This species exhibits an optimal growth temperature of 30.0°C and utilizes lithotrophic metabolism, deriving energy from inorganic compounds. Methanosarcina mazei LYC is capable of inhabiting a range of ecological niches, reflecting its versatility in various anaerobic habitats.↵↵As a strict anaerobe, M. mazei LYC plays a critical role in the carbon cycle, particularly in environments where organic matter is decomposed in the absence of oxygen. Its ability to utilize different substrates for methanogenesis suggests that it could contribute significantly to methane production in diverse ecosystems, including wetlands, sediments, and even in engineered biogas systems. The ecological implications of this organism extend to its potential impact on greenhouse gas emissions, as it participates in the conversion of organic waste to methane, a process that can be harnessed for renewable energy production. Thus, understanding the metabolic pathways and environmental tolerances of Methanosarcina mazei LYC can provide insights into its ecological roles and applications in sustainable waste management." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 1434114 NZ_CP009513.1 Bac0006245 Methanosarcina siciliae HI350 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina siciliae 1434119 NZ_CP009507.1 Bac0006246 Magnetofaba australis IT-1 Pseudomonadati Pseudomonadota Magnetococcia Magnetococcales Magnetococcaceae Magnetofaba Magnetofaba australis 1434232 LVJN00000000.1 Bac0006247 Petrotoga sp. 9PWA.NaAc.5.4 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sp. 9PWA.NaAc.5.4 1434328 AZRK00000000.1 Bac0006248 Petrotoga sp. HWHPT.55.6.3 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sp. HWHPT.55.6.3 1434330 AZRJ00000000.1 Bac0006249 Pseudoalteromonas sp. JB197 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. JB197 1434839 FUKV00000000.1 Bac0006250 Sphingobacterium sp. JB170 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. JB170 1434842 FUKU00000000.1 Bac0006251 Vibrio casei Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio casei 1434844 FUKS00000000.1 Bac0006252 Lacticaseibacillus paracasei NRIC 0644 str. NRIC0644 "Lacticaseibacillus paracasei NRIC 0644 str. NRIC0644 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen availability in its environment. Lacticaseibacillus paracasei strains, including NRIC 0644, are commonly found in diverse habitats, which may include fermented foods and the gastrointestinal tracts of humans and animals.↵↵The facultative anaerobic nature of L. paracasei NRIC 0644 suggests a versatile metabolic capacity, enabling it to utilize different energy sources depending on the oxygen levels present. This adaptability may contribute to its persistence in various ecological niches, where it can play a role in fermentation processes or act symbiotically in host microbiomes. Further exploration of its ecological interactions could provide insights into its potential benefits in probiotic applications and its contributions to the overall microbial diversity in its habitats." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1435038 BAYM00000000.1 Bac0006253 Bifidobacterium moukalabense DSM 27321 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium moukalabense anaerobic 1435051 AZMV00000000.1 Bac0006254 Rhodococcus pyridinivorans SB3094 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus pyridinivorans 1435356 NC_023144.1 Bac0006255 Burkholderia pseudomallei MSHR4000 "Burkholderia pseudomallei MSHR4000 is a Gram-negative rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic metabolic requirement. As a member of the genus Burkholderia, this organism is part of a diverse group of bacteria known for their environmental versatility and ability to survive in varied habitats. ↵↵The rod shape of B. pseudomallei MSHR4000 is characteristic of many bacteria within its genus, which often exhibit unique morphological traits that can influence their ecological interactions and pathogenic potential. The organism's aerobic nature indicates that it requires oxygen for growth, which may influence its distribution in soil and other terrestrial habitats, particularly in regions with well-aerated substrates.↵↵Understanding the specific ecological niches occupied by B. pseudomallei MSHR4000 can provide insights into its interactions with other microorganisms and its role in biogeochemical processes within terrestrial ecosystems. Moreover, the capacity of this strain to thrive in oxygen-rich environments may facilitate its survival and proliferation in soils that experience periodic fluctuations in moisture and aeration, thereby highlighting the adaptability of Burkholderia species in response to varying environmental conditions." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 1435370 JPVL00000000.1 Bac0006256 Fluviicoccus keumensis str. DSM 105135 "Fluviicoccus keumensis str. DSM 105135 is a Gram-negative, spherical bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival. The spherical morphology suggests that it may exhibit unique interactions within its environment, potentially influencing its ecological niche. ↵↵The preference for aerobic conditions indicates that Fluviicoccus keumensis str. DSM 105135 may play a role in the degradation of organic matter in oxygen-rich environments, possibly contributing to biogeochemical cycles. Further investigation into its metabolic pathways could shed light on its potential applications in biotechnology, especially in processes that require aerobic degradation of compounds. Understanding the ecological role of this microbe could enhance our knowledge of microbial communities in various ecosystems, particularly those that are influenced by water and sediment dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Fluviicoccus Fluviicoccus keumensis Gram-negative sphere non-motile aerobic 29 mesophilic non-spore-forming 1435465 SHKX00000000.1 Bac0006257 Nitrospira lenta Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira lenta 1436998 OUNR00000000.1 Bac0006258 Streptococcus pyogenes STAB902 "Streptococcus pyogenes STAB902 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains or pairs. This strain thrives optimally at a temperature of 30.0°C, indicating a preference for moderately warm environments often found within host organisms. As a facultative anaerobe, S. pyogenes STAB902 can grow in both the presence and absence of oxygen, which allows it to adapt to diverse microenvironments within its host habitat.↵↵The host-associated nature of S. pyogenes STAB902 suggests that it may play a role in specific biological interactions within its ecological niche. While the specific pathogenicity of this strain is not detailed, the broader genus Streptococcus is known for its interactions with host immune systems, potentially influencing microbial community dynamics and host health. Further investigation into S. pyogenes STAB902 may provide insights into its specific ecological roles, including its interactions with other microbial species and its contributions to the host’s microbiome. Understanding these relationships could enhance knowledge of microbial ecology and the factors influencing the stability and diversity of host-associated microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1437007 NZ_CP007041.1 Bac0006259 Magnetospirillum moscoviense str. BB-1 "Magnetospirillum moscoviense str. BB-1 is a curved to spiral-shaped microbe that thrives optimally at a temperature of 29.0°C and exhibits microaerophilic characteristics, requiring low levels of oxygen for growth. This organism is part of a unique group known for its magnetotactic behavior, which allows it to orient and navigate along magnetic fields, a trait that is advantageous for its survival in various aquatic environments.↵↵As a microaerophile, Magnetospirillum moscoviense str. BB-1 is adapted to environments where oxygen levels are lower than atmospheric concentrations, which may include stratified aquatic habitats where oxygen gradients are present. The curved or spiral morphology of this bacterium may also play a role in its motility and ability to navigate through viscous environments, potentially influencing its ecological interactions and habitat preferences.↵↵The combination of its temperature preference and oxygen requirements suggests that Magnetospirillum moscoviense str. BB-1 occupies a niche that could be found in specific freshwater or marine sediment layers, where conditions are favorable for its survival and metabolic activities. This microbe contributes to the biogeochemical cycling of iron and other elements in its environment, highlighting its potential role in microbial ecology and environmental microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum moscoviense curved/spiral motile microaerophile 29 mesophilic 1437059 LWQU00000000.1 Bac0006260 Bradyrhizobium erythrophlei Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium erythrophlei 1437360 NZ_LT670849.1 Bac0006261 Candidatus Criblamydia sequanensis CRIB-18 Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis 1437425 CCEJ000000000.1 Bac0006262 Mesotoga sp. BH458_6_3_2_1 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp. BH458_6_3_2_1 1437446 JFHL00000000.1 Bac0006263 Bifidobacterium mongoliense DSM 21395 "Bifidobacterium mongoliense DSM 21395 is a microorganism that thrives in a temperature range of psychrotolerant, preferring temperatures between 10°C and 37°C. From a metabolic perspective, this bacterium is a Heterotroph, meaning it derives its energy by breaking down organic compounds. Specifically, it is an aerobic chemoheterotroph, as it uses oxygen to produce energy through the process of cellular respiration. Morphologically, B. mongoliense DSM 21395 is a Gram-positive bacterium, characterized by its rod-shaped morphology. The bacterium is found in all body sites of various species, including the human gut, where it plays a crucial role in maintaining a healthy gut microbiome. In terms of oxygen preference, B. mongoliense DSM 21395 is an Obligate Aerobe, meaning it requires the presence of dissolved oxygen to survive and grow. This is evident from its ability to produce energy through aerobic respiration. As a member of the Bifidobacterium genus, B. mongoliense DSM 21395 is well-adapted to its environment. Its ability to thrive in a wide range of temperatures and oxygen levels makes it a versatile microorganism. Additionally, its presence in various body sites highlights its importance in maintaining a balanced microbiome. Interestingly, B. mongoliense DSM 21395 has been found to produce various bioactive compounds, including antimicrobial peptides and volatile organic compounds, which may contribute to its role in promoting gut health. Furthermore, research has suggested that this microorganism may be a potential probiotic candidate, capable of alleviating symptoms associated with gastrointestinal disorders." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium mongoliense Positive Facultative anaerobe 1437603 JGZE00000000.1 Bac0006264 Bifidobacterium actinocoloniiforme DSM 22766 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium actinocoloniiforme anaerobic 1437605 JGYK00000000.1 Bac0006265 Bifidobacterium reuteri DSM 23975 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium reuteri anaerobic 1437610 JGZK00000000.1 Bac0006266 Bifidobacterium pullorum subsp. saeculare DSM 6531 = LMG 14934 "Bifidobacterium pullorum subsp. saeculare DSM 6531 (also known as LMG 14934) is a Gram-positive, nonsporulating rod-shaped bacterium classified within the Bifidobacterium genus. This microbe is characterized as a chemoheterotroph, indicating its reliance on organic compounds as both a carbon and energy source. Bifidobacterium pullorum subsp. saeculare is primarily found in the intestinal microflora of animals, where it plays a role in gut health and digestion.↵↵As a member of the Bifidobacterium genus, B. pullorum subsp. saeculare is likely involved in the fermentation of dietary fibers, producing beneficial short-chain fatty acids that can contribute to the overall health of the host organism. The presence of this subspecies in the intestinal tract suggests its potential significance in maintaining a balanced microbial community, which is crucial for digestive function and may influence immune responses.↵↵Additionally, the isolation of Bifidobacterium pullorum subsp. saeculare from animal intestinal microflora highlights the species' adaptability to a symbiotic lifestyle within its host. This relationship underscores the importance of gut microbiota diversity and the role of specific bacterial strains in supporting the health and well-being of animals, potentially impacting broader ecological interactions within their environments." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pullorum Positive Rod No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1437611 JGZM00000000.1 Bac0006267 Xenorhabdus nematophila AN6/1 "Xenorhabdus nematophila AN6/1 is a Gram-negative, rod-shaped bacterium that is nonsporulating and exhibits facultative anaerobic metabolism. This microbe is primarily associated with hosts, indicating a specific ecological niche that may involve interactions with nematodes or other organisms. ↵↵As a facultative anaerobe, X. nematophila AN6/1 can thrive in both aerobic and anaerobic environments, which may confer advantages in fluctuating conditions encountered within host organisms or their environments. The nonsporulating characteristic suggests that this strain relies on vegetative growth rather than forming spores for survival, which can influence its ecological strategy and interactions with other microbiota.↵↵The host-associated habitat of X. nematophila AN6/1 highlights its potential role in symbiotic relationships, particularly with nematodes, where it may contribute to the metabolic processes or provide benefits to its host. This relationship could play a significant role in nutrient cycling or biocontrol in soil ecosystems, reflecting the broader ecological implications of its presence. Understanding the traits of X. nematophila AN6/1 can aid in elucidating its functional role within host-associated environments and its potential application in biological control strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus nematophila Negative Rod No 1 2 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1437823 NZ_LN681228.1 Bac0006268 Castellaniella defragrans 65Phen Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Castellaniella Castellaniella defragrans aerobic 1437824 NZ_HG916765.1 Bac0006269 Corynebacterium sphenisci DSM 44792 "Corynebacterium sphenisci DSM 44792 is a Gram-positive, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolic capabilities. As a non-spore-forming organism, it demonstrates an ability to thrive in varying oxygen conditions, which may allow it to occupy diverse ecological niches. This microbe's Gram-positive nature suggests a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can withstand harsh environmental conditions.↵↵Corynebacterium species are often distinguished by their unique biochemical properties, although specific metabolic pathways for C. sphenisci DSM 44792 have not been detailed here. The facultative nature of this organism might enable it to adapt to both aerobic and anaerobic environments, potentially influencing its survival and ecological interactions within its habitat. ↵↵The ability to switch between aerobic respiration and fermentation could be advantageous in environments where oxygen levels fluctuate, suggesting that C. sphenisci DSM 44792 may play a role in nutrient cycling or interactions with other microbial communities. Further investigation into its ecological role could reveal insights into the dynamics of microbial communities in various environments, particularly in relation to its adaptable oxygen requirements." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sphenisci Gram-positive rod non-motile facultative aerobe/anaerobe non-spore-forming 1437874 NZ_CP009248.1 Bac0006270 Xanthomonas phaseoli pv. syngonii LMG 9055 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas phaseoli 1437878 JPUO00000000.2 Bac0006271 Escherichia albertii KF1 "Escherichia albertii KF1 is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, is classified as a chemoheterotroph, and is a facultative anaerobe. This microbe is known for its versatility in different environments and can be isolated from a variety of body sites including the intestinal tracts of various animal species, particularly birds and mammals, as well as from environmental sources such as contaminated water and food. The gram-negative status of Escherichia albertii KF1 implies that it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its resilience against certain types of antibiotics. Its rod shape allows for efficient movement and colonization within host organisms and environments. As a mesophilic bacterium, it prefers moderate temperature ranges generally found in warm-blooded animals, making it well-adapted for life in the intestines of its hosts. Being a chemoheterotroph, Escherichia albertii KF1 derives both carbon and energy from organic compounds, which it utilizes for growth and reproduction. Its facultative anaerobic nature enables it to survive with or without oxygen, allowing it to colonize various niches within its host or the environment where oxygen levels may fluctuate. Escherichia albertii KF1 is increasingly studied for its potential role in gastrointestinal infections and its ability to survive in harsh conditions. Notably, it is related to other pathogenic Escherichia coli strains, contributing to its relevance in food safety and public health. This bacterium also serves as a model organism for understanding microbial ecology and the dynamics of host-microbe interactions in both natural and clinical settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia albertii Negative Facultative anaerobe 1440052 NZ_CP007025.1 Bac0006272 Bacillus gobiensis str. FJAT-4402 "Bacillus gobiensis strain FJAT-4402 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under aerobic conditions. This microbe has an optimal growth temperature of approximately 29.0 °C, indicating a preference for moderate thermal environments, which may suggest its adaptation to specific ecological niches characterized by similar temperature ranges.↵↵As a member of the genus Bacillus, B. gobiensis str. FJAT-4402 likely possesses the ability to form resilient spores, allowing it to survive adverse environmental conditions. The spore-forming trait is a notable characteristic of many Bacillus species, facilitating their persistence in fluctuating habitats. The aerobic nature of this strain suggests it utilizes oxygen for metabolism, which may influence its role in biogeochemical cycles, particularly in the degradation of organic matter in well-oxygenated soils.↵↵Further investigation into the ecological roles of B. gobiensis str. FJAT-4402 could provide insights into its potential contributions to soil health and nutrient cycling, especially in environments where aerobic metabolism plays a crucial role. Understanding its specific interactions within microbial communities could shed light on its functional significance in terrestrial ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus gobiensis Gram-positive rod aerobic 29 mesophilic spore-forming 1441095 NZ_CP012600.1 Bac0006273 Nitrospirillum amazonense CBAmc Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Nitrospirillum Nitrospirillum viridazoti aerobic 1441467 NZ_CP022111.1 Bac0006274 Leptospirillum ferriphilum YSK Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferriphilum 1441628 NZ_CP007243.1 Bac0006275 Fusobacterium necrophorum BFTR-2 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum 1441736 JAAG00000000.1 Bac0006276 Rhodococcus rhodochrous KG-21 "Rhodococcus rhodochrous KG-21 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolism and thrives in aerobic environments, predominantly found in soil habitats. This microbe is characterized by its ability to utilize a variety of organic compounds as energy sources, making it an adaptable organism within its ecological niche. ↵↵Rhodococcus species are known for their versatile metabolic capabilities, which allow them to degrade a range of pollutants and organic compounds in the soil. As a member of the Rhodococcus genus, KG-21 may contribute to bioremediation processes, although specific details regarding its degradative abilities or interactions with other soil microorganisms are not provided. ↵↵The presence of R. rhodochrous KG-21 in soil ecosystems underscores its potential significance in nutrient cycling and organic matter decomposition. Its aerobic nature suggests a role in the oxidation of organic substrates, potentially influencing soil health and composition through its metabolic activities. Understanding the specific interactions and functions of R. rhodochrous KG-21 within the soil microbiome may provide insights into its ecological role and applications in environmental biotechnology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus rhodochrous Positive Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 1441923 AZYO00000000.1 Bac0006277 Dankookia rubra str. JCM30602 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Dankookia Dankookia rubra 1442381 SMSJ00000000.1 Bac0006278 Winogradskyella wandonensis str. CECT 8445 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella wandonensis 1442586 SMGI00000000.1 Bac0006279 Algoriphagus boseongensis str. CECT 8446 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus boseongensis 1442587 SNYF00000000.1 Bac0006280 Clostridium sp. K25 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. K25 1443109 NZ_CM003345.1 Bac0006281 Clostridium novyi B str. NCTC 9691 "Clostridium novyi B str. NCTC 9691 is a Gram-positive, rod-shaped bacterium that typically arranges itself in pairs or as single cells. As a chemoorganotroph, this microbe derives its energy from organic compounds, facilitating its survival in diverse terrestrial habitats. Notably, C. novyi B is an obligate anaerobe, meaning it thrives in environments devoid of oxygen, which is characteristic of many members of the Clostridium genus. ↵↵The ecological role of C. novyi B may involve the decomposition of organic matter in soil environments, contributing to nutrient cycling and the breakdown of complex organic substrates. Its ability to function in anaerobic conditions suggests a potential involvement in the fermentation processes within soil ecosystems, where it may interact with other microbial communities. Such interactions can be crucial for maintaining soil health and fertility, highlighting the importance of anaerobic bacteria in terrestrial ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium novyi Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Terrestrial Free living Pairs - Singles 1443122 NZ_CM003342.1 Bac0006282 Clostridium botulinum C/D str. It1 "Clostridium botulinum C/D str. It1 is a Gram-positive, rod-shaped bacterium that can be found in diverse habitats, exhibiting a unique cellular arrangement characterized by singles, pairs, and chains. This strain thrives optimally at a temperature of 37.0°C and is classified as a chemoorganotroph, relying on organic compounds for its energy source. ↵↵As an anaerobic organism, C. botulinum C/D str. It1 requires an environment devoid of oxygen for its growth and metabolism, which is a typical trait of clostridia. The ability to survive and proliferate in various habitats suggests a potential for adaptation to different ecological niches, including soil, sediments, and potentially within the gastrointestinal tracts of certain animals. ↵↵The diverse arrangement of cells and the strain's anaerobic nature may contribute to its survival strategies in fluctuating environments. This adaptability is crucial for its persistence in ecological systems, where it can exploit organic materials in the absence of oxygen. Understanding the traits of C. botulinum C/D str. It1 not only sheds light on its physiological capabilities but also emphasizes the importance of anaerobic bacteria in nutrient cycling and ecosystem dynamics." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1443126 JENO00000000.1 Bac0006283 Escherichia coli 2-005-03_S4_C2 "Escherichia coli 2-005-03_S4_C2 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, suggesting a potential association with host environments. As a facultative anaerobe, E. coli 2-005-03_S4_C2 can grow in both the presence and absence of oxygen, enabling it to adapt to varying oxygen conditions within its host-associated habitat.↵↵The ability of this strain to flourish in host environments indicates its potential role in the complex microbiota of the gastrointestinal tract, where it may contribute to nutrient assimilation or compete with other microbial species. Furthermore, its morphological characteristics and metabolic flexibility may be advantageous for survival in diverse physiological niches within host organisms. Understanding the specific interactions and roles of E. coli 2-005-03_S4_C2 within its ecological framework could provide insights into microbial dynamics and the maintenance of gut health in its associated hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444228 JJLN00000000.1 Bac0006284 Escherichia coli 2-427-07_S4_C3 "Escherichia coli 2-427-07_S4_C3 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the body temperature of warm-blooded hosts, suggesting a close association with host organisms. As a facultative anaerobe, E. coli 2-427-07_S4_C3 can utilize oxygen for respiration when available but is also capable of fermentative metabolism in anaerobic conditions, allowing it to adapt to various environments within its host.↵↵The habitat of E. coli 2-427-07_S4_C3 being host-associated indicates that this strain may play a role in the microbiota of its host, potentially contributing to digestive processes and nutrient absorption. The ability to exist in both aerobic and anaerobic conditions further enhances its adaptability within the complex ecosystems found in the gastrointestinal tract of mammals. Understanding the metabolic flexibility and environmental adaptability of this strain may provide insights into its interactions with the host microbiome and its potential implications for maintaining gut health or influencing host responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444266 JOMY00000000.1 Bac0006285 Clostridium novyi A str. 4552 "Clostridium novyi A str. 4552 is a Gram-positive, rod-shaped bacterium characterized by its arrangement in pairs or as single cells. This strain is classified as a chemoorganotroph, indicating that it derives energy through the degradation of organic compounds. C. novyi A str. 4552 is an obligate anaerobe, thriving in environments devoid of oxygen, which aligns with its terrestrial habitat.↵↵The anaerobic nature of C. novyi A str. 4552 suggests that it plays a significant role in the decomposition processes within soil ecosystems. As a chemoorganotroph, it likely contributes to the mineralization of organic matter, thereby facilitating nutrient cycling in terrestrial environments. This metabolic capability positions C. novyi A str. 4552 as a potential participant in the microbial community dynamics, influencing the availability of nutrients for other organisms inhabiting similar ecological niches. Further studies could elucidate its interactions with other soil microorganisms and its role in maintaining soil health and fertility." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium novyi Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Terrestrial Free living Pairs - Singles 1444289 JENJ00000000.1 Bac0006286 Candidatus Rubidus massiliensis str. Rubis Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis 1444712 CCSC00000000.1 Bac0006287 Xylella taiwanensis str. PLS229 "Xylella taiwanensis str. PLS229 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbe is part of the Xylella genus, which is known for its association with plant hosts. As a Gram-negative organism, Xylella taiwanensis str. PLS229 possesses an outer membrane that contains lipopolysaccharides, which can play a role in its interactions with the environment and host organisms.↵↵The strain PLS229 is one of the variants within the Xylella taiwanensis species, which has garnered interest due to its potential role in plant health and symptom expression. Its rod shape indicates that it likely has a specific mechanism of cell division and growth, which is common among many bacterial species. This morphological trait may confer advantages in colonization and adaptation within the plant xylem, where it is found.↵↵While specific details regarding the ecological role of Xylella taiwanensis str. PLS229 in relation to its host plants are not provided, the presence of this bacterium in xylem tissues suggests it may influence water transport and nutrient flow within plants. This interaction could have significant implications for plant vitality and resilience, particularly in response to environmental stressors. Further research is warranted to elucidate the functional consequences of Xylella taiwanensis str. PLS229 within its ecological niche and its interactions with other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella taiwanensis Gram-negative rod 1444770 JDSQ00000000.1 Bac0006288 Bacteroides reticulotermitis JCM 10512 "Bacteroides reticulotermitis JCM 10512 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0 °C. This species is non-spore-forming, which suggests a reliance on stable anaerobic environments for survival and proliferation. ↵↵The characteristics of Bacteroides reticulotermitis indicate its potential role in the complex microbial communities found in the gastrointestinal tracts of various organisms, particularly in the context of symbiotic relationships within the gut microbiome. The anaerobic nature of this microbe allows it to inhabit environments that are inhospitable to oxygen-dependent organisms, potentially contributing to nutrient cycling and the degradation of complex polysaccharides in the intestinal ecosystem.↵↵Overall, Bacteroides reticulotermitis exemplifies the diverse metabolic capabilities of the Bacteroides genus, highlighting the importance of anaerobic bacteria in maintaining gut health and facilitating digestion in host organisms." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides reticulotermitis Gram-negative rod non-motile anaerobic 37 mesophilic non-spore-forming 1445607 BAIV00000000.1 Bac0006289 Actinotignum sanguinis str. DSM 26039 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinotignum Actinotignum sanguinis anaerobic 1445614 QDIE00000000.1 Bac0006290 Escherichia coli O118:H16 str. 2009C-4446 "Escherichia coli O118:H16 str. 2009C-4446 is a Gram-negative rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at 37.0°C, which is consistent with the body temperature of its host organisms, indicating a potential adaptation to a host-associated habitat. E. coli O118:H16 str. 2009C-4446 exhibits facultative anaerobic metabolism, allowing it to survive in both aerobic and anaerobic environments. ↵↵As a member of the Enterobacteriaceae family, this strain is likely to be part of the normal intestinal flora of various hosts, where it may play a role in nutrient processing and maintaining gut health. The ability to adapt to varying oxygen levels may confer a survival advantage in the complex and fluctuating environments found within the intestines of mammals. ↵↵Overall, the ecological significance of E. coli O118:H16 str. 2009C-4446 could be linked to its metabolic flexibility and association with host organisms, highlighting the importance of such bacterial strains in the broader context of gastrointestinal microbiota and their contributions to host well-being." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1446549 JHGP00000000.1 Bac0006291 Escherichia coli O145:NM str. 2010C-3526 "Escherichia coli O145:NM str. 2010C-3526 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells, demonstrating a versatile morphology that facilitates adaptation to various environments. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of many warm-blooded hosts, indicating its potential association with host organisms. As a facultative anaerobe, E. coli O145:NM has the metabolic flexibility to grow in both aerobic and anaerobic conditions, enabling it to exploit a wide range of ecological niches within host-associated environments.↵↵The habitat of E. coli O145:NM is primarily linked to its association with hosts, suggesting potential roles in the microbiota of mammals. While specific pathogenicity traits are not indicated in the provided data, the presence of this strain in host-associated environments may imply interactions with the host's immune system and microbiome dynamics. Further investigation into the ecological interactions of E. coli O145:NM could provide insights into its potential roles in health and disease, particularly in the context of gut microbiota balance and host physiology. Understanding such dynamics is crucial, as the presence of various E. coli strains can significantly influence microbial community structure and function within their respective habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1446596 JHFN00000000.1 Bac0006292 Escherichia coli O174:H8 str. 04-3038 "Escherichia coli O174:H8 str. 04-3038 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain of E. coli is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It has an optimal growth temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli O174:H8 str. 04-3038 plays a significant role in the gut microbiota of various hosts, where it can contribute to nutrient absorption and metabolic processes. The ability to exist in pairs or singly may allow for versatile interactions within the gut environment, including potential collaboration with other microbial species or responses to the host's immune system. ↵↵Further investigations into the ecological roles of this strain could shed light on its specific interactions with host organisms and its contributions to the overall microbial community structure in different environments. Understanding these dynamics may provide insights into how this strain influences host health and microbiome stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1446704 JHOC00000000.1 Bac0006293 Escherichia coli O69:H11 str. 08-4661 "Escherichia coli O69:H11 str. 08-4661 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with its adaptation to host-associated habitats. As a facultative anaerobe, E. coli O69:H11 str. 08-4661 can metabolize in both the presence and absence of oxygen, allowing it to occupy various niches within host organisms.↵↵The Gram-negative nature of this bacterium is indicative of its cell wall structure, which includes a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. These features are significant for understanding its interactions with the host environment and potential implications for immune responses. The rod shape and ability to exist in pairs may contribute to its colonization strategies within host tissues.↵↵The ecological role of Escherichia coli O69:H11 str. 08-4661 may be influenced by its host-associated lifestyle, which could involve interactions with other microbial communities in the gastrointestinal tract or other host habitats. This strain's facultative anaerobic metabolism suggests a versatility that may enable it to adapt to fluctuating oxygen levels, further enhancing its survival and ecological success within the host. Understanding these traits provides insight into the physiological capabilities of E. coli O69:H11 str. 08-4661 and its potential interactions within the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1446753 JHHG00000000.1 Bac0006294 Frondihabitans sp. 762G35 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frondihabitans Frondihabitans sp. 762G35 1446794 NZ_CP014619.1 Bac0006295 Bifidobacterium pseudolongum PV8-2 "Bifidobacterium pseudolongum PV8-2 is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in pairs. This microbe is a chemoheterotroph, obtaining its energy from organic compounds, and thrives in anaerobic conditions, making it well-suited for the gut environment of its host. Its optimal growth temperature is approximately 37.0°C, which aligns with the physiological temperature of many mammals. ↵↵Bifidobacterium pseudolongum PV8-2 is part of the diverse microbial community found in the gastrointestinal tract, where it plays a crucial role in digestion and the maintenance of gut health. The presence of such bifidobacteria is often associated with beneficial effects, including the production of short-chain fatty acids and the modulation of the gut microbiota composition. ↵↵Understanding the specific functions and interactions of Bifidobacterium pseudolongum PV8-2 within the gut ecosystem can offer insights into its potential contributions to host health, particularly in the context of gut microbiome stability and overall metabolic processes. Its adaptation to anaerobic conditions and its association with host gut environments underscore its potential role in symbiotic relationships with the host, highlighting the importance of gut-residing microbes in nutrient absorption and immune system modulation." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 1447715 NZ_CP007457.1 Bac0006296 Wenxinia saemankumensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Wenxinia Wenxinia saemankumensis 1447782 FQYO00000000.1 Bac0006297 Lactococcus cremoris subsp. cremoris IBB477 "Lactococcus cremoris subsp. cremoris IBB477 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 40.0°C, reflecting its adaptation to environments that may experience elevated thermal conditions. L. cremoris subsp. cremoris is typically found in diverse habitats, which may include dairy products, where it plays a crucial role in fermentation processes. ↵↵As a member of the Lactococcus genus, this subspecies contributes significantly to the production of lactic acid, influencing the flavor and preservation of fermented foods. Its facultative anaerobic capability allows it to survive in both aerobic and anaerobic environments, providing versatility in its ecological niches. ↵↵The presence of L. cremoris subsp. cremoris IBB477 in varied habitats underscores its potential utility in biotechnological applications, particularly in dairy fermentation and the development of probiotic products. Further studies could elucidate its specific roles in microbial communities and its interactions with other microorganisms in these environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1449093 NZ_CM007354.1 Bac0006298 Roseivivax halodurans JCM 10272 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseivivax Roseivivax halodurans 1449350 JALZ00000000.1 Bac0006299 Pseudidiomarina halophila str. BH195 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina halophila 1449799 PIPW00000000.1 Bac0006300 Kutzneria viridogrisea DSM 43870 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kutzneria Kutzneria albida 29 mesophilic spore-forming 1449976 NZ_CP007155.1 Bac0006301 Sphingobium indicum F2 "Sphingobium indicum F2 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolism. This organism optimally grows at a temperature of 28.0°C, indicating a preference for moderate environmental conditions. As a member of the Sphingobium genus, it is likely to play a role in the degradation of complex organic compounds in its terrestrial ecosystem. ↵↵The aerobic nature of Sphingobium indicum F2 suggests that it relies on oxygen for its metabolic processes, which may influence its ecological niche, particularly in environments where oxygen is readily available. Its ability to inhabit terrestrial ecosystems positions it as a potential participant in soil microbiomes, where microbial interactions are critical for nutrient cycling and organic matter decomposition.↵↵Understanding the traits of Sphingobium indicum F2 not only adds to the knowledge of its biological characteristics but also hints at its potential contributions to soil health and bioremediation efforts. Its metabolic capabilities may allow it to assist in breaking down pollutants or organic materials, thus serving an important function in maintaining ecological balance in its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium indicum Negative Rod No 1 2 Aerobic 28 Mesophilic Terrestrial Free living 1450518 JANF00000000.2 Bac0006302 Kaistella haifensis DSM 19056 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella haifensis 1450526 JASZ00000000.2 Bac0006303 Bacillus sp. TS-2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. TS-2 1450694 BAWL00000000.1 Bac0006304 Corynebacterium falsenii DSM 44353 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium falsenii 1451189 NZ_CP007157.1 Bac0006305 Microbacterium sp. MRS-1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. MRS-1 1451261 JAUF00000000.1 Bac0006306 Crenobacter luteus str. CN10 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Crenobacter Crenobacter luteus 1452487 LQQU00000000.1 Bac0006307 Candidatus Atelocyanobacterium thalassa isolate ALOHA Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Candidatus Atelocyanobacterium Candidatus Atelocyanobacterium thalassae 1453429 NC_013771.1 Bac0006308 Kosmotoga arenicorallina S304 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Kosmotoga Kosmotoga arenicorallina anaerobic 1453497 JFHK00000000.1 Bac0006309 Flavobacterium aquatile LMG 4008 = ATCC 11947 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aquatile aerobic 1453498 JRHH00000000.1 Bac0006310 Campylobacter lari RM16712 "Campylobacter lari RM16712 is a Gram-negative bacterium characterized by its distinct spirilla shape and ability to form chains or exist as single cells. This microbe is classified as microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which is a notable adaptation for survival in various habitats. ↵↵C. lari RM16712 has been isolated from multiple habitats, suggesting a versatile ecological niche that may contribute to its adaptability and potential interactions with other microbial communities. The microaerophilic requirement implies that this organism may play a specific role in ecosystems where oxygen levels fluctuate, such as in certain aquatic environments or within the gastrointestinal tracts of animals.↵↵Understanding the traits of C. lari RM16712 enhances our knowledge of the ecological roles that Campylobacter species may fulfill, particularly in relation to their adaptation to low-oxygen environments. This insight underscores the importance of studying microbial diversity in various habitats to uncover the functional contributions of such organisms to their ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles 1453988 NZ_CP007778.1 Bac0006311 Candidatus Accumulibacter sp. SK-11 Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter sp. SK-11 1454000 JFAW00000000.1 Bac0006312 Candidatus Accumulibacter appositus Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter appositus 1454003 JEMX00000000.1 Bac0006313 Actibacterium mucosum KCTC 23349 "Actibacterium mucosum KCTC 23349 is an ovoid, aerobic bacterium characterized by its unique morphology and metabolic requirements. This microbe thrives in environments where oxygen is readily available, indicating a reliance on aerobic respiration for energy production. ↵↵The ovoid shape of Actibacterium mucosum KCTC 23349 may confer advantages in its ecological niche, potentially affecting its motility and interaction with surrounding microbial communities. Aerobic bacteria such as this species play crucial roles in various biogeochemical cycles, particularly in the degradation of organic materials and the cycling of nutrients in their environments.↵↵Given its aerobic nature, Actibacterium mucosum KCTC 23349 may be involved in processes that require oxygen, such as the oxidation of organic compounds. This trait positions it as a potential contributor to the microbial dynamics in environments rich in organic matter, such as soil or aquatic ecosystems. As such, understanding the specific ecological roles of Actibacterium mucosum KCTC 23349 could provide insights into its contributions to nutrient cycling and ecosystem functioning. Further research may elucidate its interactions with other microbes and its role in maintaining ecological balance." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Actibacterium Actibacterium mucosum ovoid non-motile aerobic 1454373 JFKE00000000.1 Bac0006314 Bifidobacterium pseudocatenulatum IPLA36007 "Bifidobacterium pseudocatenulatum IPLA36007 is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium, which is commonly found in the gastrointestinal tract of humans and other mammals. This species, like other bifidobacteria, is characterized by its ability to ferment carbohydrates, producing various metabolites that can influence gut health.↵↵As an anaerobe, B. pseudocatenulatum IPLA36007 thrives in environments devoid of oxygen, which aligns with its ecological niche in the gut microbiome. The bacterium plays a significant role in the fermentation of dietary fibers and oligosaccharides, contributing to the production of short-chain fatty acids (SCFAs) that are beneficial for gut health and overall metabolism.↵↵Research indicates that Bifidobacterium species, including B. pseudocatenulatum, are involved in maintaining gut homeostasis and may have a role in modulating the immune response. While specific traits of B. pseudocatenulatum IPLA36007 regarding its metabolic capabilities or interactions with other gut flora are not detailed, its classification within the bifidobacteria suggests that it could contribute to the overall balance of the intestinal microbiota.↵↵In summary, Bifidobacterium pseudocatenulatum IPLA36007 exemplifies the functional diversity of anaerobic, Gram-positive bacteria in the human gut, highlighting its potential significance in digestive health and the microbiome's complex ecosystem. Its presence may enhance the fermentation processes that support not only gut health but also the intricate interplay of microbial communities within the host." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum Positive Anaerobe 1454376 JEOD00000000.1 Bac0006315 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1913 "Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1913 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain optimally thrives at a temperature of 37.0°C, which is indicative of its adaptation to warm-blooded hosts. As a chemoorganotroph, it relies on organic compounds for energy, further highlighting its association with host environments. ↵↵The habitat of this strain is primarily host-associated, suggesting a close relationship with animal or human hosts, which aligns with the broader ecological role of Salmonella species in gastrointestinal environments. Its microaerophilic nature implies that it prefers environments with reduced oxygen levels, a condition often found in the intestinal tracts of various hosts.↵↵Understanding the specific traits of Salmonella enterica serovar Montevideo str. USDA-ARS-USMARC-1913 contributes to our knowledge of its ecological niche and potential interactions within host microbiomes. This strain's ability to thrive under microaerophilic conditions while utilizing organic substrates for energy may provide insights into its metabolic flexibility and survival strategies in diverse environments where oxygen levels can fluctuate, thus enhancing our understanding of its ecological role in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1454601 NZ_CP025279.1 Bac0006316 Bacillus sp. SA1-12 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. SA1-12 1455638 LATZ00000000.1 Bac0006317 Bifidobacterium longum subsp. infantis EK3 "Bifidobacterium longum subsp. infantis EK3 is a Gram-positive, rod-shaped bacterium that exhibits a varied cell arrangement, occurring in clusters, pairs, and singles. This subspecies is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen, which is consistent with its habitat being primarily host-associated. Optimal growth occurs at a temperature of 37.0°C, aligning with the physiological conditions of the human gastrointestinal tract, where this microbe is commonly found.↵↵As a member of the Bifidobacterium genus, B. longum subsp. infantis EK3 plays a crucial role in the gut microbiota, particularly in infants. This subspecies is known to contribute to the maintenance of gut health by aiding in the digestion of lactose and other carbohydrates, potentially influencing the overall metabolic processes within the host. Furthermore, its anaerobic nature suggests a specialized adaptation to the gut environment, where oxygen levels are minimal.↵↵The presence of B. longum subsp. infantis EK3 in the gut microbiome may also reflect the evolutionary significance of such microbes in establishing a symbiotic relationship with their host, contributing to immune system development and modulation. Understanding these traits of B. longum subsp. infantis EK3 enhances our knowledge of its potential benefits in early life gut health and underscores the importance of maintaining a balanced microbiota for overall well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1457183 JNWB00000000.1 Bac0006318 Acetobacter aceti 1023 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter aceti 1457393 JEOA00000000.1 Bac0006319 Streptococcus oralis subsp. dentisani "Streptococcus oralis subsp. dentisani is a Gram-positive coccus that typically exhibits a cellular arrangement in pairs or chains. This subspecies is categorized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is particularly advantageous in host-associated habitats. ↵↵As a member of the Streptococcus genus, S. oralis subsp. dentisani contributes to the complex microbial communities found within the oral cavity, suggesting a role in the maintenance of oral health and homeostasis. Its ability to exist in chains or pairs may facilitate its attachment to various surfaces in the oral environment, including dental plaque and mucosal tissues. ↵↵Given its facultative anaerobic nature, S. oralis subsp. dentisani can adapt to fluctuating oxygen levels typically encountered in the oral microbiome, further underscoring its ecological versatility. This adaptability may play a pivotal role in the competitive dynamics of oral microbial communities, influencing interactions among microorganisms and potentially impacting oral health outcomes. Thus, S. oralis subsp. dentisani exemplifies the intricate balance of microbial life in the human mouth, highlighting its potential significance in oral ecology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1458253 PKIG00000000.1 Bac0006320 Helicobacter valdiviensis str. WBE14 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter valdiviensis 1458358 NBIU00000000.1 Bac0006321 Serpentinimonas raichei str. A1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Serpentinimonas Serpentinimonas raichei 1458425 NZ_AP014568.1 Bac0006322 Moorena producens PAL-8-15-08-1 Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Moorena Moorena producens 1458985 NZ_CP017599.1 Bac0006323 Streptomyces sp. PCS3-D2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PCS3-D2 1460244 NZ_CP097800.1 Bac0006324 Amycolatopsis lurida NRRL 2430 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis lurida 29 mesophilic spore-forming 1460371 JFBM00000000.1 Bac0006325 Geomicrobium sp. JCM 19038 Bacillati Bacillota Bacilli Caryophanales Geomicrobium Geomicrobium sp. JCM 19038 1460635 BAXA00000000.1 Bac0006326 Geomicrobium sp. JCM 19039 Bacillati Bacillota Bacilli Caryophanales Geomicrobium Geomicrobium sp. JCM 19039 1460636 BAXB00000000.1 Bac0006327 Vibrio sp. JCM 19053 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. JCM 19053 1460648 BAXK00000000.1 Bac0006328 Geomicrobium sp. JCM 19055 Bacillati Bacillota Bacilli Caryophanales Geomicrobium Geomicrobium sp. JCM 19055 1460649 BAXL00000000.1 Bac0006329 Aestuariispira insulae str. CECT 8488 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Aestuariispiraceae Aestuariispira Aestuariispira insulae 1461337 QRDW00000000.1 Bac0006330 Jeotgalicoccus saudimassiliensis str. 13S34_air Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Jeotgalicoccus Jeotgalicoccus saudimassiliensis 1461582 CCSE00000000.1 Bac0006331 Actibacterium atlanticum str. 22II-S11-Z10 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Actibacterium Actibacterium atlanticum 1461693 AQQY00000000.1 Bac0006332 Pseudooceanicola atlanticus str. 22II-s11g Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola atlanticus 1461694 AQQX00000000.1 Bac0006333 Pseudoalteromonas sp. SCSIO_11900 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. SCSIO_11900 1461766 JEMJ00000000.1 Bac0006334 Virgibacillus salexigens "Virgibacillus salexigens is a Gram-positive, rod-shaped bacterium that is notable for its ability to form spores, which contributes to its resilience in various environments. This microbe thrives at an optimal temperature of 37.0°C, indicating a preference for moderate thermal conditions. As an aerobic organism, V. salexigens requires oxygen for its metabolic processes, which further underscores its adaptation to environments where oxygen is available.↵↵The spore-forming capability of V. salexigens not only aids in survival under adverse conditions but also reflects its potential role in nutrient cycling and ecological interactions within its habitat. The ability to produce spores can be an advantageous trait for surviving desiccation or other stresses that may occur in its environment. ↵↵Given its aerobic nature and optimal growth temperature, Virgibacillus salexigens may be particularly well-adapted to niches that experience fluctuating conditions, such as those found in marine or saline environments. This characteristic suggests that the microbe could play a significant role in biogeochemical processes within these ecosystems, potentially influencing nutrient availability and microbial community dynamics. Understanding its physiology and ecological roles may provide insights into microbial resilience and adaptability in changing environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus salexigens Gram-positive Rod aerobic 37 mesophilic spore-forming 1462526 CCDP000000000.1 Bac0006335 Halarcobacter ebronensis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Halarcobacter Halarcobacter ebronensis 1462615 PDKK00000000.1 Bac0006336 Rickettsia endosymbiont of Proechinophthirus fluctus str. SPI-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia endosymbiont of Proechinophthirus fluctus 1462733 LECS00000000.1 Bac0006337 Thermosipho sp. 1063 Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho sp. 1063 anaerobic 1462747 NZ_CP007223.1 Bac0006338 Paraburkholderia ginsengiterrae str. DCY85 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia ginsengiterrae 1462993 LXKA00000000.1 Bac0006339 Paenibacillus yonginensis str. DCY84 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus yonginensis 1462996 NZ_CP014167.1 Bac0006340 Flavihumibacter sp. ZG627 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavihumibacter Flavihumibacter sp. ZG627 1463156 JPHF00000000.1 Bac0006341 Mesotoga sp. H07pep.5.4 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp. H07pep.5.4 1463664 JFHM00000000.1 Bac0006342 Acidiphilium sp. JA12-A1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidiphilium Acidiphilium sp. JA12-A1 1464546 JFHO00000000.1 Bac0006343 Pantoea coffeiphila str. 342 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea coffeiphila 1465635 PDET00000000.1 Bac0006344 Peptoniphilus porci Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus porci 1465756 MJIH00000000.1 Bac0006345 Carbonactinospora thermoautotrophica str. UBT1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Carbonactinosporaceae Carbonactinospora Carbonactinospora thermoautotrophica 1469144 JYIJ00000000.1 Bac0006346 Spirosoma oryzae str. DSM 28354 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma oryzae 1469603 PVTE00000000.1 Bac0006347 Rhodovulum sp. NI22 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sp. NI22 1469613 JQFU00000000.1 Bac0006348 Kineothrix alysoides str. DSM 100556 "Kineothrix alysoides strain DSM 100556 is a rod-shaped, spore-forming microbe characterized as Gram-negative. This bacterium thrives optimally at a temperature of 37.0°C, indicating a potential adaptation to warm environments, which is typical for many mesophilic microorganisms. Kineothrix alysoides is obligately anaerobic, necessitating the absence of oxygen for growth and metabolic activity, a trait that influences its habitat and ecological interactions.↵↵The spore-forming capability of Kineothrix alysoides suggests a strategy for survival under unfavorable environmental conditions, allowing it to endure periods of stress or nutrient limitation. This resilience is particularly significant in anaerobic environments where competition and resource availability may fluctuate. ↵↵Understanding the metabolic pathways and ecological roles of Kineothrix alysoides may provide insights into its interactions within microbial communities, especially in anaerobic niches where it may contribute to nutrient cycling or other biogeochemical processes. Further research could elucidate its specific ecological functions, shedding light on its role in natural ecosystems or potential applications in biotechnology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Kineothrix Kineothrix alysoides Gram-negative / Gram-positive rod motile anaerobic 37 mesophilic spore-forming 1469948 SLUO00000000.1 Bac0006349 Actinoalloteichus hoggarensis str. DSM 45943 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinoalloteichus Actinoalloteichus hoggarensis 1470176 NZ_CP022521.1 Bac0006350 Neisseria arctica str. KH1503 "Neisseria arctica strain KH1503 is a Gram-negative spherical bacterium characterized by its distinct morphology and cell wall structure. As a member of the Neisseria genus, this strain exhibits the typical structural features associated with Gram-negative bacteria, including a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. The spherical shape of N. arctica KH1503 suggests potential adaptations for survival in various environments, possibly influencing its motility and nutrient acquisition strategies.↵↵While specific metabolic pathways and ecological roles of N. arctica KH1503 remain to be fully elucidated, its classification within the Neisseria genus implies potential associations with diverse ecological niches. Neisseria species are often found in mucosal surfaces and may play roles in microbial community dynamics. The adaptation strategies of N. arctica KH1503 may further reflect its ability to thrive in cold environments, as suggested by its species designation ""arctica.""↵↵Research into the ecological interactions and environmental resilience of N. arctica KH1503 could provide insights into microbial life in extreme conditions. Understanding its traits may contribute to broader knowledge about the microbial ecosystems in polar regions, highlighting the potential for unique metabolic processes and interactions among cold-adapted microorganisms." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria arctica Gram-negative sphere 1470200 JTDO00000000.1 Bac0006351 Zhongshania aliphaticivorans Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Zhongshania Zhongshania aliphaticivorans 1470434 NZ_CP014544.1 Bac0006352 Streptomyces sp. Tu 6176 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Tu 6176 1470557 JFJQ00000000.1 Bac0006353 Shimia gijangensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia gijangensis 1470563 FQZQ00000000.1 Bac0006354 Thalassospira sp. MCCC 1A03138 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira sp. MCCC 1A03138 1470576 JFJY00000000.1 Bac0006355 Sphingomonas sp. RIT328 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. RIT328 1470591 JFYV00000000.1 Bac0006356 Pseudomonas helmanticensis str. BIGb0525 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas helmanticensis 1471381 SOCQ00000000.1 Bac0006357 Corynebacterium pelargi str. 136/3 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pelargi 1471400 NZ_CP035299.1 Bac0006358 Paenibacillus sp. P1XP2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. P1XP2 1472719 JRNV00000000.1 Bac0006359 Lentibacillus amyloliquefaciens str. LAM0015 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lentibacillus Lentibacillus amyloliquefaciens 1472767 NZ_CP013862.1 Bac0006360 Mizugakiibacter sediminis Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Mizugakiibacter Mizugakiibacter sediminis 1475481 BBUM00000000.2 Bac0006361 Helicobacter sp. 11S02629-2 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 11S02629-2 1476195 MLAN00000000.1 Bac0006362 Helicobacter sp. 11S03491-1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 11S03491-1 1476196 MLAO00000000.1 Bac0006363 Helicobacter sp. 12S02634-8 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 12S02634-8 1476199 MLAP00000000.1 Bac0006364 Pedobacter xixiisoli Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter xixiisoli 1476464 OCMT00000000.1 Bac0006365 Haloferax massiliensis Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax massiliensis 1476858 CSTE00000000.1 Bac0006366 Peptoniphilus sp. DNF00840 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus sp. DNF00840 1477000 LSDH00000000.1 Bac0006367 Prauserella flavalba Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella flavalba 1477506 MASU00000000.1 Bac0006368 Pseudomonas sp. 250J Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 250J 1478142 JHEE00000000.1 Bac0006369 Neochlamydia sp. EPS4 Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. EPS4 1478175 JSDQ00000000.1 Bac0006370 Halomonas sp. HL-48 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. HL-48 1479235 LJZS00000000.1 Bac0006371 Marinobacter sp. HL-58 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. HL-58 1479237 LIHP00000000.1 Bac0006372 Spirochaeta lutea str. JC230 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta lutea 1480694 JNUP00000000.1 Bac0006373 Vibrio ishigakensis str. JCM19232 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ishigakensis 1481914 BBSA00000000.1 Bac0006374 Vibrio ishigakensis str. JCM 19231 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ishigakensis 1481914 BBRZ00000000.1 Bac0006375 Vibrio ishigakensis str. JCM 19241 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ishigakensis 1481914 BBSC00000000.1 Bac0006376 Geobacillus sp. CAMR5420 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. CAMR5420 1482739 JHUS00000000.1 Bac0006377 Halorubrum sp. C3 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. C3 1483399 NHOB00000000.1 Bac0006378 Halorubrum sp. E3 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. E3 1483400 NHPI00000000.1 Bac0006379 Methanosarcina sp. 2.H.T.1A.15 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. 2.H.T.1A.15 1483596 JJOW00000000.1 Bac0006380 Methanosarcina sp. 2.H.A.1B.4 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. 2.H.A.1B.4 1483600 JJOV00000000.1 Bac0006381 Methanosarcina sp. 1.H.T.1A.1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. 1.H.T.1A.1 1483602 JJQY00000000.1 Bac0006382 Exiguobacterium sp. AB2 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. AB2 1484479 JNAA00000000.1 Bac0006383 Cecembia rubra str. DSM 28057 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia rubra 1485585 PYGF00000000.1 Bac0006384 Lacinutrix venerupis str. DSM 28755 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lacinutrix Lacinutrix venerupis 1486034 RCCH00000000.1 Bac0006385 Maricaulis sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Maricaulis Maricaulis sp. 1486257 NZMJ00000000.1 Bac0006386 Roseovarius sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius sp. 1486281 NZQR00000000.1 Bac0006387 Litoreibacter ascidiaceicola Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Litoreibacter Litoreibacter ascidiaceicola 1486859 FQUV00000000.1 Bac0006388 Streptomyces sp. NTK 937 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NTK 937 1487711 JJOB00000000.1 Bac0006389 Mycobacterium persicum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium persicum 1487726 UPHL00000000.1 Bac0006390 Clostridium sp. HMP27 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. HMP27 1487921 JMFY00000000.1 Bac0006391 Desulfosporosinus sp. HMP52 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus sp. HMP52 1487923 JMGA00000000.1 Bac0006392 Corynebacterium sp. ATCC 6931 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. ATCC 6931 1487956 NZ_CP008913.1 Bac0006393 Paracoccus lutimaris str. CECT 8525 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus lutimaris 1490030 QPJL00000000.1 Bac0006394 Anoxybacillus sp. B7M1 str. b7m1 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus sp. B7M1 1490057 NZ_CP015437.1 Bac0006395 Dyadobacter sediminis str. Z12 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter sediminis 1493691 VCEI00000000.1 Bac0006396 Chryseobacterium shandongense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium shandongense 1493872 NZ_CP033913.1 Bac0006397 Arthrobacter sp. PAMC 25486 str. PAMC25486 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. PAMC 25486 1494608 NZ_CP007595.1 Bac0006398 Pseudogracilibacillus auburnensis str. DSM 28556 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pseudogracilibacillus Pseudogracilibacillus auburnensis 1494959 QJJQ00000000.1 Bac0006399 Pseudomonas capeferrum str. WCS358 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas capeferrum 1495066 JMIT00000000.1 Bac0006400 Halostagnicola sp. A56 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halostagnicola Halostagnicola sp. A56 1495067 JMIP00000000.2 Bac0006401 Streptomyces malaysiensis subsp. malaysiensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces malaysiensis 1495638 NZ_CP025018.1 Bac0006402 Brevundimonas sp. EAKA Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. EAKA 1495854 JMQR00000000.1 Bac0006403 Cyanobium sp. CACIAM 14 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium sp. CACIAM 14 1496688 JMRP00000000.1 Bac0006404 Listeriaceae bacterium FSL A5-0209 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeriaceae bacterium FSL A5-0209 1497679 JNEZ00000000.1 Bac0006405 Prochlorococcus sp. MIT 0601 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 0601 1499498 JNAU00000000.1 Bac0006406 Pseudomonas saudiphocaensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas saudiphocaensis 1499686 NZ_CCSF01000001.1 Bac0006407 Planococcus massiliensis "Planococcus massiliensis is a cocci-shaped, nonsporulating bacterium identified as a fermentative, aerobic, chemoheterotroph. This microbe thrives optimally at 37°C, making it well-suited to conditions typically found in human-associated environments. Its metabolic versatility allows it to utilize various organic compounds as energy sources, positioning it as an important player in the degradation of organic matter in diverse habitats. First isolated from a human clinical sample, Planococcus massiliensis has been detected in a range of environments, underscoring its adaptability. This adaptability is further exemplified by its capacity to inhabit both aerobic conditions, where it relies on oxygen for metabolism, and environments that may feature fluctuating oxygen levels. Its presence in clinical settings highlights its potential role in human health, where it may contribute to microbial communities on mucosal surfaces. An intriguing aspect of Planococcus massiliensis is its involvement in biogeochemical cycles, particularly in organic matter decomposition. By breaking down complex substrates in various ecosystems, this bacterium may play a critical role in nutrient recycling, thereby impacting soil health and plant growth. Furthermore, its potential use in biotechnological applications, such as waste treatment, illustrates how understanding the ecological functions of microbes like Planococcus massiliensis can lead to innovative solutions for environmental management." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus massiliensis Cocci No 1 Aerobic 37 Chemoheterotroph Multiple Nonsporulating 1499687 CCXS00000000.1 Bac0006408 Candidatus Vecturithrix granuli Candidatus Moduliflexota Candidatus Vecturitrichia Candidatus Vecturitrichales Candidatus Vecturitrichaceae Candidatus Vecturithrix Candidatus Vecturithrix granuli 1499967 BAYZ00000000.1 Bac0006409 Mesotoga sp. SC_NapDC Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp. SC_NapDC 1499972 JNFM00000000.1 Bac0006410 Nitrosotalea sinensis Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea sinensis 1499975 FRFC00000000.1 Bac0006411 Burkholderia sp. WP9 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. WP9 1500263 FNTG00000000.1 Bac0006412 Chryseobacterium sp. YR221 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. YR221 1500293 FWXM00000000.1 Bac0006413 Pseudomonas sp. Snoq117.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Snoq117.2 1500302 FOED00000000.1 Bac0006414 Halopolyspora algeriensis str. CECT 8575 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Halopolyspora Halopolyspora algeriensis 1500506 QPJC00000000.1 Bac0006415 Pseudomonas sp. Os17 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Os17 1500686 NZ_AP014627.1 Bac0006416 Campylobacter sp. RM16704 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. RM16704 1500960 NZ_CP007769.1 Bac0006417 Paenibacillus tyrphae Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus tyrphae Malaysian swamp 1501230 JNVM00000000.1 Bac0006418 Palleronia abyssalis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Palleronia Palleronia abyssalis 1501240 ONZF00000000.1 Bac0006419 Prochlorococcus sp. MIT 0604 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 0604 1501268 NZ_CP007753.1 Bac0006420 Coprobacter secundus str. 177 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Coprobacter Coprobacter secundus 1501392 JTDA00000000.2 Bac0006421 Streptococcus parasuis str. 4253 "Streptococcus parasuis strain 4253 is a Gram-positive bacterium classified within the Streptococcus genus. This microbe exhibits a microaerophilic oxygen requirement, indicating that it thrives in environments with reduced oxygen levels, which is characteristic of its ecological niches. ↵↵The Gram-positive nature of S. parasuis strain 4253 suggests that it possesses a thick peptidoglycan layer in its cell wall, a feature that is generally associated with enhanced resistance to certain environmental stressors. This strain's microaerophilic lifestyle may influence its distribution and survival strategies within host organisms and its ecological interactions. ↵↵Although specific pathogenicity details are not provided, members of the Streptococcus genus are known to inhabit various environments, including the mucosal surfaces of mammals. This strain could potentially play a role in the complex microbial communities associated with porcine hosts, suggesting a possible symbiotic or commensal relationship. Understanding the precise ecological role of S. parasuis strain 4253 may provide insights into its interactions within the host microbiome and its contributions to health or disease states in swine populations. Further research is warranted to elucidate the biological implications of its microaerophilic traits and Gram-positive characteristics in various ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasuis positive microaerophile 1501662 SHGT00000000.1 Bac0006422 Methylobacterium sp. 174MFSha1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. 174MFSha1.1 1502749 FPCB00000000.1 Bac0006423 Bacillus sp. UNCCL81 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. UNCCL81 1502755 FOMF00000000.1 Bac0006424 Luteibacter sp. UNCMF366Tsu5.1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter sp. UNCMF366Tsu5.1 1502758 FPIS00000000.1 Bac0006425 Paenibacillus sp. UNCCL117 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. UNCCL117 1502764 FPIU00000000.1 Bac0006426 Curtobacterium sp. UNCCL20 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. UNCCL20 1502773 FNKG00000000.1 Bac0006427 Caulobacter sp. UNC279MFTsu5.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. UNC279MFTsu5.1 1502775 FORN00000000.1 Bac0006428 Pseudomonas sp. AAC Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. AAC 1502784 JNCW00000000.1 Bac0006429 Allobosea sp. LC85 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. LC85 1502851 JPKG00000000.1 Bac0006430 Massilia sp. LC238 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. LC238 1502852 JNNN00000000.1 Bac0006431 Burkholderia singularis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia singularis aerobic 1503053 LOWA00000000.1 Bac0006432 Burkholderia stagnalis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia stagnalis 1503054 LPHB00000000.1 Bac0006433 Burkholderia territorii Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia territorii aerobic 1503055 LPLZ00000000.1 Bac0006434 actinobacterium acAMD-5 Bacillati Actinomycetota Actinomycetes actinobacterium acAMD-5 1504319 JNSF00000000.1 Bac0006435 Robinsoniella sp. RHS Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Robinsoniella Robinsoniella sp. RHS 1504536 JNGB00000000.1 Bac0006436 Halomonas sp. KO116 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. KO116 1504981 NZ_CP011053.1 Bac0006437 Bradyrhizobium centrolobii Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium centrolobii 1505087 LUUB00000000.1 Bac0006438 Weissella bombi Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella bombi microaerophile 1505725 FMAO00000000.1 Bac0006439 Convivina intestini str. DSM 28795 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Convivina Convivina intestini microaerophile 1505726 QEKT00000000.1 Bac0006440 Thermococcus eurythermalis str. A501 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus eurythermalis 1505907 NZ_CP008887.1 Bac0006441 Mesorhizobium sp. SOD10 str. SOD10 (STM8789) Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. SOD10 1505946 CCNA00000000.1 Bac0006442 Candidatus Chloroploca asiatica str. B7-9 Bacillati Chloroflexota Chloroflexia Chloroflexales Oscillochloridaceae Candidatus Chloroploca Candidatus Chloroploca asiatica 1506545 LYXE00000000.1 Bac0006443 Burkholderia sp. MSh2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. MSh2 1506588 JPGM00000000.1 Bac0006444 Sphingopyxis flava Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis flava 1507287 FUYP00000000.1 Bac0006445 Romboutsia hominis Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Romboutsia hominis 1507512 NZ_LN650648.1 Bac0006446 Streptomyces antioxidans str. MUSC 164 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces antioxidans 1507734 LAKD00000000.2 Bac0006447 Vibrio coralliirubri Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio coralliirubri 1507977 CCKF00000000.1 Bac0006448 Aureibacillus halotolerans str. DSM 28697 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Aureibacillus Aureibacillus halotolerans 1508390 SNYJ00000000.1 Bac0006449 Acinetobacter sp. HR7 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. HR7 1509403 JPQO00000000.1 Bac0006450 Flectobacillus sp. BAB-3569 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Flectobacillus Flectobacillus sp. BAB-3569 1509483 NJFZ00000000.1 Bac0006451 Rhizobium sp. H41 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. H41 1510041 JPFJ00000000.1 Bac0006452 Permianibacter aggregans str. DSM 103792 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Permianibacter Permianibacter aggregans 1510150 SNYM00000000.1 Bac0006453 Streptomyces sp. PT12 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PT12 1510197 QEST00000000.1 Bac0006454 Litoreibacter ponti str. DSM 100977 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Litoreibacter Litoreibacter ponti 1510457 QBKS00000000.1 Bac0006455 Ascidiaceihabitans donghaensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Ascidiaceihabitans Ascidiaceihabitans donghaensis 1510460 OMOR00000000.1 Bac0006456 Rahnella woolbedingensis str. DSM 27399 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rahnella Rahnella woolbedingensis 1510574 RAHH00000000.1 Bac0006457 Gluconobacter sp. DsW_058 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter sp. DsW_058 aerobic 1511210 JOPH00000000.1 Bac0006458 Thermoanaerobacter sp. YS13 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter sp. YS13 1511746 JOOI00000000.1 Bac0006459 Catenovulum maritimum str. Q1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Catenovulum Catenovulum maritimum 1513271 LAZL00000000.1 Bac0006460 Pseudomonas chlororaphis subsp. piscium Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis 1513890 NZ_CP027708.1 Bac0006461 Rhodopseudomonas pseudopalustris "Rhodopseudomonas pseudopalustris is a rod-shaped, anaerobic bacterium known for its versatile metabolic capabilities. This microbe thrives in environments where oxygen is limited, allowing it to utilize alternative electron donors and acceptors for energy production. Its ability to perform photosynthesis, coupled with its anaerobic metabolism, enables it to adapt to various ecological niches, such as freshwater sediments and other anoxic environments.↵↵Rhodopseudomonas pseudopalustris is notable for its potential role in biogeochemical cycles, particularly in the cycling of carbon and nitrogen. By engaging in processes such as nitrogen fixation, this organism can contribute to soil fertility and enhance nutrient availability in its habitat. Additionally, its photosynthetic abilities allow it to harness light energy, further supporting its growth in low-oxygen conditions.↵↵This bacterium exemplifies the adaptability of prokaryotic life, as it can switch between different metabolic pathways depending on environmental conditions. Such metabolic flexibility not only aids in its survival but also highlights its potential utility in biotechnological applications, such as bioremediation and bioenergy production. As a model for studying anaerobic photosynthetic processes, Rhodopseudomonas pseudopalustris offers insights into how microorganisms can thrive in diverse and challenging environments, contributing to our understanding of microbial ecology and ecosystem dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas pseudopalustris rod anaerobic 1513892 FODT00000000.1 Bac0006462 Sphingobacterium nematocida "Sphingobacterium nematocida is a Gram-negative, rod-shaped bacterium that is part of the diverse Sphingobacteriaceae family. This microbe is characterized by its unique morphology and cell wall structure, typical of Gram-negative organisms, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. Its rod shape contributes to its motility and adaptability in various environments.↵↵Sphingobacterium nematocida has garnered attention due to its potential interactions with nematodes, which may involve the production of metabolites that influence the nematode lifecycle. While specific pathogenicity details remain unclear, the genus Sphingobacterium is known for its role in soil ecosystems, where it can contribute to nutrient cycling and organic matter decomposition.↵↵This bacterium's ecological significance may extend beyond its interactions with nematodes, as it likely participates in complex microbial communities within soil and rhizosphere environments, potentially facilitating plant-microbe interactions. Understanding the role of Sphingobacterium nematocida in its native habitat could provide insights into its contributions to soil health and plant growth, thereby illuminating its ecological functions in terrestrial ecosystems." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium nematocida Gram-negative rod non-motile 1513896 FUZF00000000.1 Bac0006463 Tetragenococcus halophilus subsp. halophilus "Tetragenococcus halophilus subsp. halophilus is a halophilic bacterium characterized by its cocci shape. This organism thrives in high-salinity environments, which is reflective of its adaptation to extreme conditions. As a member of the genus Tetragenococcus, it is known for its ability to survive and proliferate in sodium-rich habitats, where most microorganisms would struggle to maintain cellular integrity and metabolic functions.↵↵The coccoid morphology of T. halophilus subsp. halophilus plays a critical role in its survival strategy, as this shape may confer advantages in osmotic regulation and nutrient uptake in saline environments. The organism's halophilic nature suggests that it possesses specialized cellular mechanisms, such as compatible solute accumulation and unique ion transport systems, allowing it to balance osmotic pressure effectively.↵↵Tetragenococcus halophilus subsp. halophilus is often studied in the context of food microbiology, particularly in relation to its presence in fermented products. Its ability to thrive in high-salt conditions makes it a relevant species for applications in food preservation and fermentation processes, contributing to the unique flavors and characteristics of certain traditional foods.↵↵Overall, Tetragenococcus halophilus subsp. halophilus exemplifies the remarkable adaptations of microorganisms to extreme environments, highlighting the potential for such organisms to be utilized in biotechnological applications that exploit their salt tolerance and metabolic capabilities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus halophilus Cocci 1513897 BDEC00000000.1 Bac0006464 Pseudoalteromonas sp. NC201 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. NC201 1514074 NZ_CP022523.1 Bac0006465 Lewinella xylanilytica str. DSM 29526 Pseudomonadati Bacteroidota Saprospiria Saprospirales Lewinellaceae Neolewinella Neolewinella xylanilytica 1514080 PTJC00000000.1 Bac0006466 Erysipelothrix larvae str. LV19 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelothrix Erysipelothrix larvae anaerobic 1514105 NZ_CP013214.1 Bac0006467 Haloprofundus marisrubri str. SB9 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus marisrubri 1514971 LOPU00000000.1 Bac0006468 Prauserella sp. Am3 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella sp. Am3 1515610 JTJI00000000.1 Bac0006469 Sphingopyxis fribergensis str. Kp5.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis fribergensis 1515612 NZ_CP009123.1 Bac0006470 Porphyromonas sp. COT-239 OH1446 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. COT-239 OH1446 1515613 JRAO00000000.1 Bac0006471 Shewanella mangrovi str. YQH10 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella mangrovi 1515746 JPEO00000000.1 Bac0006472 Porphyromonadaceae bacterium COT-184 OH4590 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium COT-184 OH4590 1517682 JRAN00000000.1 Bac0006473 Amphiplicatus metriothermophilus Pseudomonadati Pseudomonadota Alphaproteobacteria Parvularculales Parvularculaceae Amphiplicatus Amphiplicatus metriothermophilus 1519374 FZQA00000000.1 Bac0006474 Streptomyces sp. NRRL F-5755 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-5755 1519475 LGCW00000000.1 Bac0006475 Streptomyces sp. H021 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. H021 1519486 LGDR00000000.1 Bac0006476 Streptomyces sp. H036 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. H036 1519487 LGDS00000000.1 Bac0006477 Streptomyces sp. NRRL B-3648 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL B-3648 1519493 LGDZ00000000.1 Bac0006478 Streptomyces sp. NRRL F-7442 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-7442 1519498 LGEH00000000.1 Bac0006479 Mycobacteroides stephanolepidis Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides stephanolepidis 1520670 NZ_AP018165.1 Bac0006480 Pseudobutyrivibrio sp. ACV-2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. ACV-2 1520801 FNQZ00000000.1 Bac0006481 Pseudobutyrivibrio sp. YE44 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. YE44 1520802 FMXT00000000.1 Bac0006482 Pseudobutyrivibrio sp. AR14 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. AR14 1520804 FMUY00000000.1 Bac0006483 Butyrivibrio sp. INlla16 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. INlla16 1520807 FMYB00000000.1 Bac0006484 Butyrivibrio sp. INlla21 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. INlla21 1520811 FPCC00000000.1 Bac0006485 Paracoccus sp. SM22M-07 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sp. SM22M-07 1520813 JPKW00000000.1 Bac0006486 Ruminococcaceae bacterium FB2012 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium FB2012 1520817 FMXS00000000.1 Bac0006487 Lachnospiraceae bacterium XPB1003 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium XPB1003 1520825 FMVK00000000.1 Bac0006488 Lachnospiraceae bacterium XBB2008 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium XBB2008 1520826 FMVL00000000.1 Bac0006489 Lachnospiraceae bacterium XBB1006 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium XBB1006 1520827 FOXT00000000.1 Bac0006490 Pantoea sp. 3.5.1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. 3.5.1 1522060 JMRT00000000.3 Bac0006491 Rhodococcus sp. Br-6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. Br-6 1522141 BDGK00000000.2 Bac0006492 Kingella negevensis "Kingella negevensis is a Gram-negative, non-spore-forming spherical bacterium. This organism is a member of the genus Kingella, which is known for its association with specific ecological niches and environments. As a Gram-negative bacterium, K. negevensis possesses an outer membrane that contains lipopolysaccharides, a characteristic that influences its interactions with the surrounding environment and host organisms.↵↵The spherical shape of K. negevensis may confer certain advantages in terms of surface area-to-volume ratio, potentially affecting nutrient uptake and susceptibility to environmental stresses. The absence of sporulation indicates that this microbe relies on alternative survival strategies in adverse conditions, such as forming biofilms or exhibiting resilience through other metabolic adaptations.↵↵K. negevensis may play a role in its native habitat, contributing to microbial diversity and community dynamics. Its specific ecological functions remain to be fully elucidated, but the traits of Gram-negative morphology and non-spore-forming nature suggest it may thrive in moist environments where rapid growth and adaptability are advantageous. Further research could illuminate its role in microbial interactions and ecosystem functioning, providing valuable insights into the ecological niches occupied by members of the Kingella genus." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella negevensis Gram-negative sphere non-motile non-spore-forming 1522312 FXUV00000000.2 Bac0006493 bacterium YEK0313 bacterium YEK0313 1522316 CCMO00000000.2 Bac0006494 Dehalococcoides sp. UCH007 Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides sp. UCH007 1522671 NZ_AP014722.1 Bac0006495 Streptomyces sp. ADI93-02 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ADI93-02 1522757 RPGU00000000.1 Bac0006496 Streptomyces sp. ADI95-16 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ADI95-16 1522758 NZ_CP033585.1 Bac0006497 Streptomyces sp. ADI96-02 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ADI96-02 1522760 RPGW00000000.1 Bac0006498 Streptomyces sp. ADI98-12 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ADI98-12 1522764 RPHA00000000.1 Bac0006499 Clostridium sp. IBUN22A Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. IBUN22A 1523155 JZWE00000000.1 Bac0006500 Novosphingobium sp. AAP1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. AAP1 1523413 LJHO00000000.1 Bac0006501 Sphingomonas sp. AAP5 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. AAP5 1523415 NZ_CP037915.1 Bac0006502 Blastomonas sp. AAP25 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Blastomonadaceae Blastomonas Blastomonas sp. AAP25 1523416 LJHP00000000.1 Bac0006503 Allobosea sp. AAP35 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. AAP35 1523417 LJHQ00000000.1 Bac0006504 Rhizobium sp. AAP43 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. AAP43 1523420 LJHS00000000.1 Bac0006505 beta proteobacterium AAP51 Pseudomonadati Pseudomonadota Betaproteobacteria beta proteobacterium AAP51 1523421 LJHT00000000.1 Bac0006506 Brevundimonas sp. AAP58 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. AAP58 1523422 LJHU00000000.1 Bac0006507 Porphyrobacter sp. AAP60 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. AAP60 1523423 LJHV00000000.1 Bac0006508 Rhodopseudomonas sp. AAP120 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas sp. AAP120 anaerobic / aerobic 1523430 LJIC00000000.1 Bac0006509 Pseudohongiella acticola str. KCTC 42131 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudohongiellaceae Pseudohongiella Pseudohongiella acticola 1524254 MASR00000000.1 Bac0006510 Actibacterium lipolyticum Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Actibacterium Actibacterium lipolyticum 1524263 FXYE00000000.1 Bac0006511 Pseudomonas sp. EGD-AKN5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. EGD-AKN5 1524461 LZYC00000000.1 Bac0006512 Testudinibacter aquarius "Testudinibacter aquarius is a Gram-negative, rod-shaped bacterium characterized as a microaerophile, which indicates its growth is optimal in environments with reduced oxygen levels. This organism's morphology and oxygen requirements suggest that it may thrive in specific ecological niches where oxygen is limited, such as aquatic environments or sediments that are partially anaerobic.↵↵The Gram-negative nature of Testudinibacter aquarius implies that it possesses a distinctive outer membrane structure, which can confer certain advantages in terms of environmental resistance and interaction with other microorganisms. The microaerophilic lifestyle of this bacterium may allow it to play a role in biogeochemical cycles, particularly in nutrient cycling in aquatic ecosystems where oxygen levels fluctuate.↵↵Understanding the traits of Testudinibacter aquarius contributes to our knowledge of microbial diversity and function in specific ecological settings. Its adaptation to low-oxygen environments positions it as a potential contributor to the degradation of organic matter in such habitats, thereby influencing the overall microbial community dynamics and nutrient availability. Further studies could elucidate the specific ecological roles that Testudinibacter aquarius plays in its natural habitat, enhancing our understanding of microbial interactions in microaerophilic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Testudinibacter Testudinibacter aquarius Gram-negative rod non-motile microaerophile 1524974 VDGV00000000.1 Bac0006513 Sulfitobacter sp. CB2047 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. CB2047 1525218 NZ_CP072613.1 Bac0006514 Streptomyces sp. JS01 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. JS01 1525753 JPWW00000000.1 Bac0006515 Lacimicrobium alkaliphilum str. KCTC 32984 "Lacimicrobium alkaliphilum str. KCTC 32984 is a Gram-negative, curved to spiral-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities. This microorganism thrives optimally at a temperature of 29.0°C, indicating a mesophilic nature, which may suggest its adaptation to moderately warm environments. ↵↵The curved or spiral morphology of Lacimicrobium alkaliphilum str. KCTC 32984 could imply a unique motility mechanism, potentially allowing it to navigate complex environments, such as alkaline habitats where it is likely to be found. The facultative lifestyle of this bacterium enables it to utilize various electron acceptors, which may confer an ecological advantage in fluctuating oxygen conditions, allowing it to survive in both oxygen-rich and oxygen-depleted ecosystems.↵↵Given its specific traits, Lacimicrobium alkaliphilum str. KCTC 32984 may play a significant role in biogeochemical cycles, particularly in alkaline environments, where it could contribute to the degradation of organic matter or the cycling of nutrients. This adaptability not only underscores the diverse metabolic pathways present within this strain but also highlights its potential ecological significance in maintaining the stability of alkaline ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Lacimicrobium Lacimicrobium alkaliphilum Gram-negative curved/spiral motile facultative aerobe/anaerobe 29 mesophilic 1526571 NZ_CP013650.1 Bac0006516 Allobosea vaviloviae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea vaviloviae 1526658 NZ_CP017148.1 Bac0006517 Allobosea vaviloviae str. SD260 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea vaviloviae 1526658 LGSZ00000000.1 Bac0006518 Vogesella sp. EB Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella sp. EB 1526735 LFDT00000000.1 Bac0006519 Vibrio sp. B183 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. B183 1526762 JPQB00000000.1 Bac0006520 Paracoccus tegillarcae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus tegillarcae 1529068 NZ_CP025411.1 Bac0006521 Acinetobacter seifertii str. C917 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter seifertii 1530123 APCT00000000.1 Bac0006522 Acinetobacter seifertii str. NIPH 973 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter seifertii 1530123 APOO00000000.1 Bac0006523 Acinetobacter seifertii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter seifertii 1530123 PGPD00000000.1 Bac0006524 Luteimonas terrae str. THG-MD21 "Luteimonas terrae strain THG-MD21 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C and is obligately aerobic. This strain exhibits typical characteristics of the genus Luteimonas, which includes the ability to utilize various organic compounds in its metabolic processes. The Gram-negative cell wall structure of Luteimonas terrae str. THG-MD21 suggests a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and its susceptibility to certain antimicrobial agents.↵↵As an aerobic organism, Luteimonas terrae str. THG-MD21 relies on molecular oxygen for energy production, indicating its potential role in biogeochemical cycling processes, particularly in environments rich in organic matter where oxygen is available. This aerobic metabolism may also contribute to the degradation of environmental pollutants, highlighting the strain's potential utility in bioremediation applications.↵↵The optimal growth temperature of 29.0°C suggests that Luteimonas terrae str. THG-MD21 is well-suited for mesophilic environments, which are common in soil and sediment ecosystems. Overall, the traits of this strain provide insight into its ecological role, which may include contributions to nutrient cycling and organic matter decomposition in aerobic habitats. Further research could elucidate its specific capabilities and applications in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas terrae Gram-negative rod motile aerobic 29 mesophilic 1530191 SMTG00000000.1 Bac0006525 Candidatus Micrarchaeum sp. AZ1 Nanobdellati Microcaldota Candidatus Micrarchaeia Candidatus Micrarchaeales Candidatus Micrarchaeaceae Candidatus Micrarchaeum Candidatus Micrarchaeum sp. AZ1 1531428 JPUK00000000.1 Bac0006526 Brevundimonas sp. DS20 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. DS20 1532555 NZ_CP012897.1 Bac0006527 Rhizobium sp. YS-1r Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. YS-1r 1532558 JPYQ00000000.1 Bac0006528 Paenibacillus sp. CAA11 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. CAA11 1532905 NZ_CP028922.1 Bac0006529 Devosia sp. 17-2-E-8 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. 17-2-E-8 1535287 JQGB00000000.1 Bac0006530 Aeromonas sp. DNP9 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. DNP9 1535548 LYSQ00000000.1 Bac0006531 Pseudomonas sp. AP19 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. AP19 1535623 LXJP00000000.1 Bac0006532 Pseudomonas sp. AP42 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. AP42 1535632 LYSO00000000.1 Bac0006533 Pseudomonas sp. ENNP23 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ENNP23 1535636 LYSP00000000.1 Bac0006534 Streptomyces lunaelactis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lunaelactis 1535768 NZ_CP026305.1 Bac0006535 Desulfobulbus sp. Tol-SR Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp. Tol-SR anaerobic 1536652 JROS00000000.1 Bac0006536 Paenibacillus sp. FSL R7-0273 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R7-0273 1536772 NZ_CP009283.1 Bac0006537 Paenibacillus sp. FSL H7-0357 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL H7-0357 1536774 NZ_CP009241.1 Bac0006538 Paenibacillus sp. FSL H7-0737 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL H7-0737 1536775 NZ_CP009279.1 Bac0006539 Pseudooceanicola algae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola algae 1537215 NZ_CP060438.1 Bac0006540 Halorubrum sp. SP9 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. SP9 1537267 SGXU00000000.1 Bac0006541 Janthinobacterium sp. HH106 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. HH106 1537278 LRIC00000000.1 Bac0006542 Porphyromonas sp. COT-108 OH1349 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. COT-108 OH1349 1537504 JRAH00000000.1 Bac0006543 Balneicella halophila str. DSM 28579 "Balneicella halophila str. DSM 28579 is a Gram-negative, rod-shaped bacterium that exhibits anaerobic growth characteristics and is non-spore-forming. This microorganism thrives optimally at a temperature of 37.0°C, suggesting a preference for mesophilic environments. The Gram-negative nature of B. halophila indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions within its environment and its response to various antimicrobial agents.↵↵The anaerobic requirement of B. halophila implies that it relies on fermentation or anaerobic respiration for its metabolic activities, potentially making it well-suited for environments where oxygen is limited. This trait may also affect its ecological niche, allowing it to inhabit specialized habitats such as saline or hypersaline environments where other microbes might struggle. ↵↵The specific adaptations of Balneicella halophila to high-salinity conditions and its anaerobic lifestyle may confer unique ecological roles within microbial communities, particularly in extreme habitats. Understanding the metabolic pathways and ecological interactions of this strain could provide insights into microbial resilience and diversity in saline environments, highlighting the importance of anaerobic microbes in biogeochemical cycling in such ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Balneicellaceae Balneicella Balneicella halophila Gram-negative rod non-motile anaerobic 37 mesophilic non-spore-forming 1537566 QENZ00000000.1 Bac0006544 Aeromicrobium camelliae str. YS17T Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium camelliae 1538144 RQJX00000000.1 Bac0006545 Alteriqipengyuania lutimaris Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Alteriqipengyuania Alteriqipengyuania lutimaris 1538146 QRBB00000000.1 Bac0006546 Rhizobium acidisoli str. FH23 "Rhizobium acidisoli strain FH23 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This strain is part of a genus known for its symbiotic relationships with leguminous plants, where it plays a crucial role in nitrogen fixation—a key process in enhancing soil fertility. ↵↵The morphological characteristics of R. acidisoli str. FH23, particularly its rod shape and Gram-positive nature, suggest a robust cell wall structure that may contribute to its survival in diverse environmental conditions. As an aerobic organism, this strain requires oxygen for its metabolic processes, which aligns with its potential ecological roles in soil environments where oxygen is readily available.↵↵Furthermore, the optimal growth temperature of 29.0°C indicates that R. acidisoli str. FH23 is adapted to moderate climate conditions, which could influence its distribution and prevalence in specific habitats. Insights into its physiological traits suggest that this bacterium may be well-suited for promoting plant growth in temperate regions, potentially aiding in sustainable agricultural practices through enhanced nitrogen availability in soils. Such characteristics underline the importance of R. acidisoli str. FH23 in agricultural microbiology and its potential contributions to ecosystem health and productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium acidisoli Gram-positive rod non-motile aerobic 29 mesophilic 1538158 LJSR00000000.1 Bac0006547 Rhizobium hidalgonense Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium hidalgonense 1538159 NWSY00000000.1 Bac0006548 Aquabacterium sp. NJ1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Aquabacterium Aquabacterium sp. NJ1 1538295 JRKM00000000.1 Bac0006549 Nocardia donostiensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia donostiensis 1538463 MUMY00000000.1 Bac0006550 Candidatus Lokiarchaeum sp. GC14_75 Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Candidatus Lokiarchaeum Candidatus Lokiarchaeum sp. GC14_75 1538547 JYIM00000000.1 Bac0006551 Clostridium sp. NCR Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. NCR 1538552 JQHY00000000.1 Bac0006552 Sphingobacterium sp. ML3W Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. ML3W 1538644 NZ_CP009278.1 Bac0006553 Chitinophaga dinghuensis str. DSM 29821 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga dinghuensis 1539050 QLMA00000000.1 Bac0006554 Bombella intestini str. R-52487 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Bombella Bombella intestini 1539051 JATM00000000.1 Bac0006555 Sulfurovum sp. PC08-66 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. PC08-66 1539063 JQIQ00000000.1 Bac0006556 Albidovulum aquaemixtae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Albidovulum Albidovulum aquaemixtae 1542388 OMOQ00000000.1 Bac0006557 Nocardioides marmorisolisilvae Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides marmorisolisilvae 1542737 RJSG00000000.1 Bac0006558 Halobacillus sp. BBL2006 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus sp. BBL2006 1543706 JRNX00000000.1 Bac0006559 Corynebacterium lowii str. NML 130206 "Corynebacterium lowii strain NML 130206 is a Gram-positive bacterium characterized by its rod-shaped morphology. This microbe is part of the genus Corynebacterium, which is known for its diverse group of species, some of which are associated with various ecological niches and physiological processes. As a Gram-positive organism, C. lowii str. NML 130206 possesses a thick peptidoglycan layer in its cell wall, which is a defining feature of this group and contributes to its structural integrity and resistance to certain environmental stresses.↵↵The rod shape of C. lowii str. NML 130206 is indicative of its potential growth patterns and cellular organization, which may influence its metabolic capabilities and interactions with surrounding microorganisms. While specific ecological roles and pathogenicity are not detailed in the provided traits, the presence of Corynebacterium species in various environments suggests that this strain may engage in complex interactions within microbial communities.↵↵One notable aspect of Corynebacterium species, including C. lowii, is their potential involvement in biogeochemical cycles, particularly in nitrogen cycling and organic matter decomposition. This ecological insight underscores the importance of further research to elucidate the specific roles and contributions of C. lowii str. NML 130206 in its natural habitat, which may lead to a better understanding of its biological significance in microbial ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium lowii Gram-positive rod non-motile 1544413 LKEV00000000.1 Bac0006560 Corynebacterium oculi str. NML 130210 "Corynebacterium oculi str. NML 130210 is a Gram-positive, rod-shaped bacterium characterized by its distinct cellular morphology and staining properties. This species belongs to the genus Corynebacterium, which is known for its club-shaped cells and pleomorphic nature. As a member of the Actinobacteria phylum, C. oculi str. NML 130210 may exhibit typical features of this group, such as a high G+C content in its DNA, which is often associated with various metabolic capabilities.↵↵The Gram-positive nature of this organism suggests the presence of a thick peptidoglycan layer in its cell wall, which is a hallmark of this classification and may influence its susceptibility to antibiotics and environmental conditions. The rod shape of C. oculi str. NML 130210 is indicative of its potential for specific arrangements and growth patterns, which can be relevant in understanding its behavior in various environments.↵↵Given its classification and structural characteristics, C. oculi str. NML 130210 may play a role in the microbial communities associated with specific ecological niches, particularly those related to animal hosts, as suggested by its name. Further exploration of its interactions within these communities could provide insights into its biological significance and potential contributions to the overall health of its habitat." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium oculi Gram-positive rod non-motile 1544416 LKST00000000.1 Bac0006561 Draconibacterium sediminis str. JN14CK-3 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Draconibacterium Draconibacterium sediminis 1544798 JRHC00000000.1 Bac0006562 Pararheinheimera mesophila str. IITR13 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera mesophila 1547515 RRCF00000000.1 Bac0006563 Geobacillus sp. BCO2 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. BCO2 1547578 LJAJ00000000.1 Bac0006564 Sanguibacteroides justesenii str. OUH 308042 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Sanguibacteroides Sanguibacteroides justesenii 1547597 JPIU00000000.1 Bac0006565 Haloplanus rubicundus Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus rubicundus 1547898 NZ_CP031147.1 Bac0006566 Helicobacter saguini Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter saguini 1548018 QBIW00000000.1 Bac0006567 Pusillimonas sp. T2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pusillimonas Pusillimonas sp. T2 1548123 NIQA00000000.1 Bac0006568 Cephaloticoccus capnophilus "Cephaloticoccus capnophilus is a Gram-negative, spherical bacterium that exhibits an aerobic metabolism. This microbe thrives at an optimal temperature of 37.0°C, which is indicative of its potential association with warm-blooded hosts. As an aerobic organism, Cephaloticoccus capnophilus requires oxygen for its growth and metabolic activities, which suggests a possible role in environments where oxygen is available. ↵↵The spherical morphology of Cephaloticoccus capnophilus may confer advantages in specific ecological niches, potentially aiding in nutrient assimilation and attachment to surfaces in aerobic environments. While the specific ecological roles and interactions of this microbe remain to be thoroughly explored, its growth characteristics suggest that it may be adapted to environments rich in organic matter and oxygen, potentially contributing to microbial communities where these conditions prevail. Further research could elucidate its ecological significance and interactions within microbial ecosystems." Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Cephaloticoccus Cephaloticoccus capnophilus Gram-negative sphere non-motile aerobic 37 mesophilic 1548208 LSZP00000000.1 Bac0006569 Alkalicoccus urumqiensis str. BZ-SZ-XJ18 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalicoccus Alkalicoccus urumqiensis 1548213 PVNS00000000.1 Bac0006570 Woeseia oceani str. XK5 "Woeseia oceani strain XK5 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities, thriving optimally at a temperature of 32.0°C. This organism's Gram-negative classification indicates the presence of a thin peptidoglycan layer and an outer membrane, characteristic of many environmental and marine bacteria. The rod shape may contribute to its motility and ability to colonize diverse substrates. As a facultative aerobe/anaerobe, Woeseia oceani str. XK5 possesses metabolic versatility, allowing it to utilize both aerobic respiration and fermentation pathways depending on the availability of oxygen. ↵↵This adaptability to different oxygen levels suggests potential ecological roles in fluctuating environments, such as marine sediments or nutrient-rich waters, where oxygen concentrations can vary. The organism's optimal growth temperature aligns with temperate marine conditions, indicating that it may be well-suited for life in oceanic ecosystems. The ability to thrive in both aerobic and anaerobic conditions may also allow Woeseia oceani str. XK5 to play a significant role in biogeochemical cycles, particularly in the cycling of carbon and nitrogen in marine environments, further underscoring its potential ecological importance." Pseudomonadati Pseudomonadota Gammaproteobacteria Woeseiales Woeseiaceae Woeseia Woeseia oceani Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic 1548547 NZ_CP016268.1 Bac0006571 Aequorivita aquimaris str. D-24 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita aquimaris 1548749 JRWG00000000.1 Bac0006572 Anoxybacillus sp. BCO1 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus sp. BCO1 geothermal hot springs 1548750 JRLC00000000.1 Bac0006573 Kiloniella litopenaei str. P1-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Kiloniellaceae Kiloniella Kiloniella litopenaei 1549748 LANI00000000.1 Bac0006574 Microvirga sp. BSC39 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga sp. BSC39 1549810 JPUG00000000.1 Bac0006575 Haematospirillum jordaniae str. H5569 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Novispirillaceae Haematospirillum Haematospirillum jordaniae 1549855 NZ_CP014527.1 Bac0006576 Sphingomonas taxi str. ATCC 55669 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 1549858 NZ_CP009571.1 Bac0006577 Modestobacter sp. DSM 44400 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Modestobacter Modestobacter sp. DSM 44400 1550230 FNOZ00000000.1 Bac0006578 Blastococcus fimeti Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus fimeti 1550233 FNAW00000000.1 Bac0006579 Thermoanaerobacterium sp. RBIITD Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium sp. RBIITD 1550240 NZ_LT906662.1 Bac0006580 Blastomonas fulva str. T2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Blastomonadaceae Blastomonas Blastomonas fulva 1550728 NZ_CP020083.1 Bac0006581 Corticibacter populi str. DSM 105136 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Corticibacter Corticibacter populi 1550736 RDQO00000000.1 Bac0006582 Leeuwenhoekiella polynyae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella polynyae 1550906 QOVK00000000.1 Bac0006583 Leptolyngbya sp. NIES-2104 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. NIES-2104 1552121 BBWW00000000.1 Bac0006584 Listeria booriae str. FSL A5-0281 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria booriae 1552123 JNFA00000000.1 Bac0006585 Mycolicibacterium grossiae Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium grossiae 1552759 MCHX00000000.1 Bac0006586 Falsigemmobacter intermedius Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Falsigemmobacter Falsigemmobacter intermedius 1553448 SBLC00000000.1 Bac0006587 Pseudomonas sp. NFACC16-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC16-2 1554560 FPIX00000000.1 Bac0006588 Limnochorda pilosa str. HC45 Bacillati Bacillota Limnochordia Limnochordales Limnochordaceae Limnochorda Limnochorda pilosa anaerobic 1555112 NZ_AP014924.1 Bac0006589 Chitinimonas sp. BJB300 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Chitinimonas Chitinimonas sp. BJB300 1559339 VDCU00000000.2 Bac0006590 Sulfuriferula multivorans Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sulfuricellaceae Sulfuriferula Sulfuriferula multivorans 1559896 BGOW00000000.1 Bac0006591 Silvibacterium dinghuense str. DHOF10 Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Silvibacterium Silvibacterium dinghuense 1560006 SDMK00000000.1 Bac0006592 Janthinobacterium sp. BJB312 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. BJB312 1560197 PDZM00000000.1 Bac0006593 Halodesulfovibrio spirochaetisodalis str. JC271 "Halodesulfovibrio spirochaetisodalis strain JC271 is a Gram-negative, anaerobic bacterium characterized by its curved or spiral shape, thriving optimally at a temperature of 32.0°C. This microbe's Gram-negative cell wall structure is indicative of its unique physiological characteristics, which may influence its interactions within anaerobic environments. ↵↵The curved or spiral morphology of Halodesulfovibrio spirochaetisodalis suggests an adaptation to its ecological niche, likely contributing to its motility in viscous environments. The optimal growth temperature of 32.0°C indicates a preference for moderately warm habitats, which may align with specific ecological settings such as sediments or other anoxic environments where temperature remains stable.↵↵Given its anaerobic requirement, Halodesulfovibrio spirochaetisodalis may play a significant role in biogeochemical cycles, particularly in sulfur cycling, as many members of the genus Halodesulfovibrio are known to participate in sulfate reduction. This trait underscores the potential ecological importance of Halodesulfovibrio spirochaetisodalis in contributing to the maintenance of anaerobic ecosystems, where it may influence both microbial community dynamics and nutrient cycling. Further exploration of this strain could reveal insights into its metabolic pathways and interactions with other microorganisms within its habitat." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio spirochaetisodalis Gram-negative curved/spiral anaerobic 32 mesophilic 1560234 JXMS00000000.1 Bac0006594 Sphingomonas panacis str. DCY99 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 1560345 NZ_CP014169.1 Bac0006595 [Mycobacterium] chelonae subsp. bovistauri Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides chelonae No 1 Nonsporulating 1561223 NZ_CP010071.1 Bac0006596 Candidatus Kurthia intestinigallinarum Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Kurthia Candidatus Kurthia intestinigallinarum 1562256 JTFC00000000.1 Bac0006597 Desulfurella amilsii str. TR1 "Desulfurella amilsii strain TR1 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This organism does not form spores, which is characteristic of its metabolic and environmental adaptations. As an anaerobic microbe, D. amilsii str. TR1 likely plays a role in biogeochemical processes, particularly in environments where sulfate reduction is prevalent. ↵↵Its adaptation to high temperatures suggests a preference for thermophilic habitats, often associated with geothermal or hot spring environments. The absence of sporulation indicates that D. amilsii str. TR1 relies on vegetative growth for survival, which may reflect its ecological niche where conditions are consistently favorable for growth and reproduction. ↵↵Understanding the metabolic pathways and environmental interactions of Desulfurella amilsii str. TR1 could provide insights into its role in sulfur cycling, particularly in extreme habitats where few other organisms can thrive. This characteristic positions D. amilsii str. TR1 as a potential model organism for studying microbial life in extreme conditions, as well as its implications for biotechnological applications related to bioremediation and bioenergy production." Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Desulfurellaceae Desulfurella Desulfurella amilsii Gram-negative rod non-motile anaerobic 45 thermophilic non-spore-forming 1562698 MDSU00000000.1 Bac0006598 Desulfovibrio sp. TomC Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. TomC 1562888 JSEH00000000.1 Bac0006599 Citrobacter pasteurii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter pasteurii 1563222 CDHL00000000.1 Bac0006600 Flavobacterium dauae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium dauae 1563479 NZ_CP130821.1 Bac0006601 Roseivirga misakiensis Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga misakiensis 1563681 MDGQ00000000.1 Bac0006602 Herbinix hemicellulosilytica Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Herbinix Herbinix hemicellulosilytica anaerobic 1564487 CVTD000000000.2 Bac0006603 Rhodovulum sp. P5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sp. P5 1564506 NZ_CP015041.1 Bac0006604 Carnobacterium antarcticum Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium antarcticum 1564681 NZ_CP010819.1 Bac0006605 Bacillus sp. UMTAT18 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. UMTAT18 1565146 JSFD00000000.1 Bac0006606 Pseudomonas sp. NFACC23-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC23-1 1566190 FNZL00000000.1 Bac0006607 Pseudomonas sp. NFACC39-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC39-1 1566195 FODL00000000.1 Bac0006608 Pseudomonas sp. NFPP09 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFPP09 1566211 FPJV00000000.1 Bac0006609 Pseudomonas sp. NFPP04 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFPP04 1566215 FOQS00000000.1 Bac0006610 Pseudomonas sp. NFACC52 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC52 1566219 FOSO00000000.1 Bac0006611 Pseudomonas sp. NFIX46 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFIX46 1566234 FMVX00000000.1 Bac0006612 Pseudomonas sp. NFIX28 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFIX28 1566235 FNPW00000000.1 Bac0006613 Kosakonia radicincitans Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia radicincitans 1566257 FPJU00000000.1 Bac0006614 Burkholderia sp. NFACC33-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. NFACC33-1 1566269 FPJF00000000.1 Bac0006615 Variovorax sp. EL159 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. EL159 1566270 FMUJ00000000.1 Bac0006616 Variovorax sp. 770b2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. 770b2 1566271 FOXJ00000000.1 Bac0006617 Mucilaginibacter sp. NFR10 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp. NFR10 1566292 FMTV00000000.1 Bac0006618 Ralstonia sp. NFACC01 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. NFACC01 1566294 FOWV00000000.1 Bac0006619 Sinorhizobium sp. NFACC03 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. NFACC03 1566295 FMXF00000000.1 Bac0006620 Paenibacillus sp. IHBB 10380 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. IHBB 10380 1566358 NZ_CP010976.1 Bac0006621 Mesorhizobium hungaricum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium hungaricum 1566387 MDEO00000000.1 Bac0006622 Thioflexithrix psekupsensis str. D3 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thioflexithrix Thioflexithrix psekupsensis 1570016 MSLT00000000.1 Bac0006623 Roseovarius sp. A-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius sp. A-2 1570360 BDIY00000000.1 Bac0006624 Rhodococcus sp. 2G Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 2G 1570939 NZ_CP018063.1 Bac0006625 Arthrobacter sp. MN05-02 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. MN05-02 1571833 AP018697.1 Bac0006626 Lysinibacillus sp. A1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. A1 1571920 JSZM00000000.1 Bac0006627 Kribbella capetownensis Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella capetownensis 1572659 SJKD00000000.1 Bac0006628 Streptomyces sp. PBH53 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PBH53 1577075 NZ_CP011799.1 Bac0006629 Candidatus Nanopusillus acidilobi Nanobdellati Nanobdellota Candidatus Nanoarchaeia Nanoarchaeales Nanopusillaceae Candidatus Nanopusillus Candidatus Nanopusillus acidilobi 1577684 CP010514.1 Bac0006630 Candidatus Methanoplasma termitum str. Mpt1 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Candidatus Methanoplasma Candidatus Methanoplasma termitum 1577791 NZ_CP010070.1 Bac0006631 Terrisporobacter othiniensis str. 08-306576 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Terrisporobacter Terrisporobacter othiniensis No 1 Chemoheterotroph Multiple Nonsporulating 1577792 JWHR00000000.1 Bac0006632 Leisingera sp. ANG-Vp Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera sp. ANG-Vp 1577896 JWLD00000000.1 Bac0006633 Leisingera sp. ANG-M7 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera sp. ANG-M7 1577902 JWLI00000000.1 Bac0006634 Ruegeria sp. ANG-S4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. ANG-S4 1577904 JWLK00000000.1 Bac0006635 Helicobacter ailurogastricus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter ailurogastricus 1578720 CDMG00000000.1 Bac0006636 Falsihalocynthiibacter arcticus str. PAMC 20958 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Falsihalocynthiibacter Falsihalocynthiibacter arcticus 1579316 NZ_CP014328.1 Bac0006637 Wenzhouxiangella marina str. KCTC 42284 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Wenzhouxiangellaceae Wenzhouxiangella Wenzhouxiangella marina 1579979 NZ_CP012154.1 Bac0006638 Phaeobacter piscinae str. P13 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter piscinae 1580596 NZ_CP010768.1 Bac0006639 Bacillus sp. FJAT-21945 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-21945 1581033 LITN00000000.1 Bac0006640 Bacillus sp. FJAT-21955 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-21955 1581034 LJJA00000000.1 Bac0006641 Bacillus sp. FJAT-22090 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-22090 1581038 NZ_CP012601.1 Bac0006642 Brevibacterium sp. HMSC24B04 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium sp. HMSC24B04 1581060 LWOU00000000.1 Bac0006643 Corynebacterium sp. HMSC30G07 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC30G07 1581072 LWOP00000000.1 Bac0006644 Granulicatella sp. HMSC31F03 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Granulicatella Granulicatella sp. HMSC31F03 1581074 LWNJ00000000.1 Bac0006645 Staphylococcus sp. HMSC14D01 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp. HMSC14D01 1581101 LUAL00000000.1 Bac0006646 Klebsiella sp. HMSC16C06 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. HMSC16C06 1581110 LUAQ00000000.1 Bac0006647 Lactobacillus sp. HMSC08B12 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. HMSC08B12 1581136 LWNA00000000.1 Bac0006648 Corynebacterium sp. HMSC08D02 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC08D02 1581138 LWNU00000000.1 Bac0006649 Arthrobacter sp. HMSC08H08 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. HMSC08H08 1581143 LWNR00000000.1 Bac0006650 Grimontia sp. AD028 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Grimontia Grimontia sp. AD028 1581149 LASY00000000.1 Bac0006651 Pseudomonas cerasi Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cerasi 1583341 NZ_LT963401.1 Bac0006652 Vibrio sp. PID23_8 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. PID23_8 1583767 LIXE00000000.1 Bac0006653 Apibacter mensalis "Apibacter mensalis is a Gram-negative, rod-shaped bacterium exhibiting optimal growth at 37.0°C. This microbe is characterized by its distinct cellular morphology and staining properties, which are indicative of its Gram-negative classification. The rod shape of A. mensalis suggests potential implications for its motility and surface interactions, which are critical for its survival in various environments.↵↵While specific ecological or pathogenic roles have not been detailed in the available trait data, the optimal growth temperature of 37.0°C aligns with the conditions typically found in warm-blooded hosts, suggesting a potential association with such environments. This temperature preference may indicate a physiological adaptation that allows A. mensalis to thrive in nutrient-rich niches that are common in mammalian hosts.↵↵Understanding the characteristics of Apibacter mensalis may provide insights into its ecological role, particularly in relation to host-associated microbiomes. Its Gram-negative nature could also imply interactions with other microbial communities, possibly influencing the dynamics of microbial diversity and metabolic functions within these ecosystems. Further investigation into the ecological interactions of A. mensalis could enhance our understanding of its functional significance in microbial communities associated with higher organisms." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Apibacter Apibacter mensalis Gram-negative rod non-motile 37 mesophilic 1586267 FCOR00000000.1 Bac0006654 Lentzea guizhouensis str. DHS C013 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea guizhouensis 1586287 NZ_CP016793.1 Bac0006655 Rhodococcus sp. MEB064 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. MEB064 1587522 JXQS00000000.1 Bac0006656 Megasphaera hutchinsoni Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera hutchinsoni vagina 1588748 LSDT00000000.1 Bac0006657 Porphyromonadaceae bacterium KA00676 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium KA00676 1588749 LSDJ00000000.1 Bac0006658 Tissierellia bacterium KA00581 Bacillati Bacillota Tissierellia Tissierellia bacterium KA00581 1588751 LSCW00000000.1 Bac0006659 Aquitalea sp. USM4 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Aquitalea Aquitalea sp. USM4 1590041 NZ_CP029539.1 Bac0006660 Gordoniibacillus kamchatkensis Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Gordoniibacillus Gordoniibacillus kamchatkensis 1590651 JXAK00000000.1 Bac0006661 Prauserella endophytica str. CGMCC 4.7182 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella endophytica 1592324 SWMS00000000.1 Bac0006662 Actinobacteria bacterium OK006 Bacillati Actinomycetota Actinomycetes Actinobacteria bacterium OK006 1592326 LJCU00000000.1 Bac0006663 Actinobacteria bacterium OV450 Bacillati Actinomycetota Actinomycetes Actinobacteria bacterium OV450 1592328 LJCW00000000.1 Bac0006664 Actinobacteria bacterium OV320 Bacillati Actinomycetota Actinomycetes Actinobacteria bacterium OV320 1592329 LJCX00000000.1 Bac0006665 Sphingomonas sp. WG Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. WG 1592629 LNOS00000000.1 Bac0006666 Haloarcula sp. CBA1115 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula sp. CBA1115 1592728 NZ_CP010534.1 Bac0006667 Prevotella pectinovora "Prevotella pectinovora is a nonsporulating, chemoheterotrophic bacterium primarily found in the intestinal microflora of animals, where it plays a significant role in the digestion of complex carbohydrates, particularly pectin. This microbe is part of the diverse Prevotella genus, which is known for its ability to break down plant polysaccharides, thereby contributing to the efficient utilization of dietary fibers in herbivorous and omnivorous hosts.Prevotella pectinovora utilizes a variety of organic compounds as energy sources, which is essential for its survival and proliferation in the complex ecosystem of the gut. The presence of this microbe is particularly beneficial for ruminants, such as cattle and sheep, where it aids in fermentative digestion and enhances nutrient absorption from plant materials. By fermenting pectin and similar polysaccharides, this organism helps to regulate the host's digestion and may impact the overall gut health. Furthermore, the metabolic activities of Prevotella pectinovora can influence the microbial community structure within the intestines. This, in turn, can affect the host's immune response and overall health, illustrating the intricate relationship between gut microbiota and host physiology. The functionality of Prevotella pectinovora highlights the vital role of specific gut microbes in nutrient cycling and energy metabolism, emphasizing their importance not only in individual host health but also in broader ecological contexts, such as food web dynamics and carbon cycling in ecosystems reliant on plant matter breakdown." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella pectinovora Negative No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1602169 JXQK00000000.1 Bac0006668 Vibrio sp. qd031 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. qd031 1603038 JXQD00000000.1 Bac0006669 Megasphaera sp. MJR8396C "Megasphaera sp. MJR8396C is a nonsporulating, anaerobic, chemoheterotrophic microbe recognized for its fermentative metabolism and ability to produce butyrate, a short-chain fatty acid crucial for gut health. Found in multiple habitats, this organism thrives in environments where organic matter is abundant, allowing it to utilize a range of substrates for energy through fermentation. Measuring its metabolic versatility, Megasphaera sp. MJR8396C engages in cross-feeding, a process where it can benefit from the metabolic byproducts of other microbes within its community. This characteristic not only enhances its survival in diverse ecosystems but also underscores its role in nutrient cycling, particularly in anaerobic environments such as the human gastrointestinal tract and fermented food products. The ability of Megasphaera sp. MJR8396C to produce butyrate is significant, as butyrate serves as an energy source for colonic cells and contributes to maintaining gut barrier integrity. This microbe may thus play an integral role in human health, influencing gut microbiota composition and potentially impacting immune responses. Understanding the ecological dynamics and interactions of Megasphaera sp. MJR8396C can provide valuable insights into microbial communities' stability and functionality, particularly in the context of fermentation processes and their implications for both health and disease." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera sp. MJR8396C No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 1603888 LRVC00000000.1 Bac0006670 Erythrobacter sp. SG61-1L Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. SG61-1L 1603897 JXQC00000000.1 Bac0006671 Halanaeroarchaeum sulfurireducens str. M27-SA2 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens 1604004 NZ_CP011564.1 Bac0006672 Pseudomonas sp. FeS53a Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FeS53a 1604022 JYFT00000000.1 Bac0006673 Methylobacterium sp. ME121 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. ME121 1604132 BBUX00000000.1 Bac0006674 alpha proteobacterium U9-1i Pseudomonadati Pseudomonadota Alphaproteobacteria alpha proteobacterium U9-1i 1605283 BBSY00000000.1 Bac0006675 Jiulongibacter sediminis str. JN14-9 "Jiulongibacter sediminis strain JN14-9 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 29.0°C. This species is part of the microbial diversity found in sedimentary environments, where its aerobic nature suggests a potential role in the degradation of organic matter in oxygen-rich sediments. The Gram-negative cell wall structure of Jiulongibacter sediminis may confer resilience to various environmental stresses, enabling it to survive in its specific ecological niche. ↵↵The preference for an optimal growth temperature of 29.0°C indicates that this microbe may be well-adapted to moderate thermal conditions, potentially reflecting the temperature profiles of its natural habitat. As an aerobic organism, Jiulongibacter sediminis likely engages in metabolic processes that require oxygen, which could play a significant role in biogeochemical cycles within the sedimentary environments it inhabits. ↵↵Overall, the traits of Jiulongibacter sediminis strain JN14-9 highlight its potential importance in ecosystem functioning, particularly in processes related to organic matter decomposition and nutrient cycling in aquatic sediments. Understanding the ecological role of this microbe could provide insights into the dynamics of sedimentary microbial communities and their contributions to environmental health." Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Jiulongibacter Jiulongibacter sediminis Gram-negative rod non-motile aerobic 29 mesophilic 1605367 LGTQ00000000.1 Bac0006676 Bowmanella sp. JS7-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Bowmanella Bowmanella sp. JS7-9 1605368 JXSY00000000.1 Bac0006677 Clostridiales bacterium PH28_bin88 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium PH28_bin88 1605376 LAKY00000000.1 Bac0006678 Pseudomonas coleopterorum Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coleopterorum 1605838 FNTZ00000000.1 Bac0006679 Actinorugispora endophytica str. DSM 46770 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Actinorugispora Actinorugispora endophytica 1605990 SNYN00000000.1 Bac0006680 Wolbachia endosymbiont of Dactylopius coccus str. wDacA Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Dactylopius coccus 1605993 LSYX00000000.1 Bac0006681 Paenibacillus sp. NAIST15-1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. NAIST15-1 1605994 BBYF00000000.1 Bac0006682 Roseovarius sp. JS7-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius sp. JS7-11 1607786 JXTF00000000.1 Bac0006683 Henriciella algicola "Henriciella algicola is a Gram-negative bacterium characterized as an aerobic organotroph and chemotroph, with an optimal growth temperature of 29.0 °C. This microbe utilizes organic compounds as its energy source, which suggests a reliance on a diverse array of substrates for metabolic processes. The Gram-negative nature of H. algicola indicates the presence of an outer membrane, which may contribute to its adaptability in various environments.↵↵The specific growth temperature of 29.0 °C places H. algicola within a mesophilic range, suggesting that it thrives in moderately warm conditions. This temperature preference may reflect its ecological niche, potentially indicating a habitat in temperate aquatic environments where such temperatures are common. The aerobic requirement of H. algicola implies that it plays a role in oxidative processes, likely contributing to nutrient cycling in its habitat.↵↵Understanding the metabolic capabilities and environmental preferences of Henriciella algicola can provide insights into its ecological function, particularly in relation to organic matter decomposition in aquatic ecosystems. Its ability to utilize organic substrates may position it as a significant player in the microbial food web, interacting with other microorganisms and influencing nutrient availability in its environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Henriciella Henriciella algicola Gram-negative motile aerobic 29 organotroph; chemotroph mesophilic 1608422 QWGA00000000.1 Bac0006684 Natrinema thermophila Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema sp. CBA1119 1608465 PDBS00000000.1 Bac0006685 Acinetobacter sp. NCu2D-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. NCu2D-2 1608473 NZ_CP015594.1 Bac0006686 Streptococcus sp. HMSC34B10 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC34B10 1608856 LTLL00000000.1 Bac0006687 Staphylococcus sp. HMSC62A08 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp. HMSC62A08 1608883 LTMG00000000.1 Bac0006688 Euzebya pacifica Bacillati Actinomycetota Nitriliruptoria Euzebyales Euzebyaceae Euzebya Euzebya pacifica 1608957 NZ_CP031165.1 Bac0006689 Pseudomonas helleri "Pseudomonas helleri is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. Unlike some other bacterial genera, Pseudomonas helleri is non-spore-forming, which may influence its survival strategies in various environments. ↵↵This bacterium is part of the diverse Pseudomonas genus, known for its metabolic versatility and ability to inhabit a wide range of ecological niches. The aerobic nature of Pseudomonas helleri suggests a reliance on oxygen for its metabolic processes, potentially positioning it within environments that are oxygen-rich, such as soil or water systems. ↵↵The preference for a moderate temperature, specifically 25.0°C, indicates that Pseudomonas helleri may be well-adapted to temperate climates or environments where such temperatures are prevalent. The combination of these traits highlights the potential ecological role of Pseudomonas helleri in nutrient cycling and its possible interactions with other microbial communities in its habitat. This adaptability to specific environmental conditions may also provide insights into its ecological significance, particularly in relation to biogeochemical processes where oxygen and moderate temperatures are common." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas helleri Gram-negative rod aerobic 25 mesophilic non-spore-forming 1608996 JYLD00000000.1 Bac0006690 Streptomyces sp. NRRL F-4489 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-4489 1609095 LLZI00000000.1 Bac0006691 Streptomyces sp. NRRL F-5122 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-5122 1609098 LMWH00000000.1 Bac0006692 Streptomyces sp. NRRL S-1521 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL S-1521 1609100 LLZK00000000.1 Bac0006693 Streptomyces sp. NRRL WC-3605 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL WC-3605 1609103 LLZN00000000.1 Bac0006694 Streptomyces sp. NRRL WC-3753 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL WC-3753 1609104 LGKF00000000.1 Bac0006695 Streptomyces sp. NRRL S-495 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL S-495 1609133 JZWY00000000.1 Bac0006696 Streptomyces sp. NRRL F-4428 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-4428 1609137 JYJI00000000.1 Bac0006697 Streptomyces sp. ACT-1 str. XylebKG-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ACT-1 1609288 ADFC00000000.2 Bac0006698 Pyrococcus kukulkanii str. NCB100 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus kukulkanii 1609559 NZ_CP010835.1 Bac0006699 Stenotrophomonas sp. DDT-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. DDT-1 1609637 LEKR00000000.1 Bac0006700 Novosphingobium sp. P6W Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. P6W 1609758 NZ_CP030355.1 Bac0006701 Actibacterium sp. EMB200-NS6 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Actibacterium Actibacterium sp. EMB200-NS6 1609966 NZ_CP010870.1 Bac0006702 Methanobrevibacter sp. YE315 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315 1609968 NZ_CP010834.1 Bac0006703 Candidatus Magnetoovum chiemensis str. CS-04 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Candidatus Magnetovum Candidatus Magnetovum chiemense 1609970 JZJI00000000.1 Bac0006704 Sphingomonas hengshuiensis str. WHSC-8 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas hengshuiensis 1609977 NZ_CP010836.1 Bac0006705 Lampropedia cohaerens str. CT6 "Lampropedia cohaerens strain CT6 is a Gram-negative, spherical bacterium that exhibits aerobic respiration. As a Gram-negative organism, it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and susceptibility to certain antibiotics. The spherical morphology of L. cohaerens CT6 suggests that it may have adaptations for specific ecological niches where such shape could confer advantages in nutrient uptake or environmental resilience.↵↵The aerobic nature of this strain indicates that it requires oxygen for growth and metabolism, positioning it within environments rich in oxygen, such as surface waters or soils that are well-aerated. This trait may also suggest potential roles in biogeochemical cycles, particularly in the oxidation of organic compounds. The combination of its Gram-negative status and aerobic lifestyle may facilitate its participation in microbial communities, where it could interact with other microorganisms in complex ways, potentially influencing nutrient cycling and organic matter decomposition.↵↵Understanding the specific ecological roles of L. cohaerens CT6 could provide insights into its contributions to environmental processes, particularly in aerobic habitats where microbial metabolism is crucial for sustaining ecosystem health. Further research into the metabolic pathways and interactions of this strain may reveal its significance in microbial ecology and its potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Lampropedia Lampropedia cohaerens Gram-negative sphere aerobic 1610491 LBNQ00000000.1 Bac0006706 Pontibacter ummariensis "Pontibacter ummariensis is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. As a heterotrophic organism, it derives its energy from organic compounds, necessitating the presence of other carbon sources for growth. This microbe displays an aerobic metabolism, requiring oxygen for its metabolic processes.↵↵The morphological characteristics of P. ummariensis, combined with its physiological traits, suggest that it plays a significant role in its ecological niche, likely contributing to the degradation of organic material in its environment. Such bacteria are commonly found in diverse habitats, including soil and aquatic systems, where they may influence nutrient cycling and organic matter decomposition. The specific adaptation to aerobic conditions implies that P. ummariensis could participate in processes such as the oxidation of organic substrates, potentially impacting the dynamics of microbial communities in oxygen-rich environments. ↵↵Understanding the ecological role of Pontibacter ummariensis may provide insights into its contribution to biogeochemical cycles, particularly in regions where organic material is abundant and oxygen levels are sufficient to support aerobic microbial life." Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter ummariensis Gram-negative rod non-motile aerobic 29 heterotroph mesophilic 1610492 FZOQ00000000.1 Bac0006707 Tessaracoccus flavus Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus flavus 1610493 FNPU00000000.1 Bac0006708 Methylomonas sp. Kb3 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas sp. Kb3 1611544 PIZT00000000.1 Bac0006709 Pseudomonas sp. MRSN 12121 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MRSN 12121 1611770 NZ_CP010893.1 Bac0006710 Niveispirillum cyanobacteriorum str. TH16 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Niveispirillum Niveispirillum cyanobacteriorum 1612173 NZ_CP025614.1 Bac0006711 Cellulosimicrobium aquatile Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium aquatile 1612203 FTMI00000000.1 Bac0006712 Pararhizobium polonicum str. F5.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Pararhizobium Pararhizobium polonicum 1612624 NZ_CM004503.1 Bac0006713 Streptomyces rubellomurinus subsp. indigoferus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rubellomurinus 1615590 JZKG00000000.1 Bac0006714 Pseudomonas lactis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lactis 1615674 JYLP00000000.1 Bac0006715 Bradyrhizobium sp. LTSP849 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. LTSP849 1615890 JYMR00000000.1 Bac0006716 Geminocystis sp. NIES-3708 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Geminocystis Geminocystis sp. NIES-3708 1615909 NZ_AP014820.1 Bac0006717 Paenibacillus bovis str. BD3526 "Paenibacillus bovis strain BD3526 is a Gram-positive, rod-shaped bacterium that exhibits the capacity for sporulation and thrives under aerobic conditions. This species demonstrates optimal growth at a temperature of 32.0°C, indicating its preference for mesophilic environments. The ability to form spores suggests a robust survival strategy, enabling it to withstand harsh conditions and potential nutritional limitations.↵↵As a member of the Paenibacillus genus, P. bovis str. BD3526 may possess traits associated with soil-dwelling bacteria, such as the potential for nutrient cycling and interactions with plant roots. The aerobic nature of this strain further implies that it may play a role in various biogeochemical processes in oxygen-rich environments. Its sporulation ability could be advantageous in ecological niches where conditions fluctuate, allowing it to endure periods of stress while ensuring its persistence in the environment.↵↵Understanding the physiological traits of Paenibacillus bovis str. BD3526 may provide insights into its ecological roles and contributions to microbial communities, particularly in agricultural or natural soil ecosystems. The strain's adaptations to aerobic conditions and temperature preferences could also inform its use in biotechnological applications or environmental microbiology studies." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus bovis Gram-positive rod motile aerobic 32 mesophilic spore-forming 1616788 NZ_CP013023.1 Bac0006718 Thalassospira sp. HJ Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira sp. HJ 1616823 JYII00000000.1 Bac0006719 Desulfosporosinus sp. I2 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus sp. I2 1617025 JYNH00000000.1 Bac0006720 Nitrospira sp. OLB3 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. OLB3 1617410 JZQY00000000.1 Bac0006721 Chloroflexi bacterium OLB15 Bacillati Chloroflexota Chloroflexi bacterium OLB15 1617416 LMZS00000000.1 Bac0006722 Bacteroidetes bacterium OLB10 Pseudomonadati Bacteroidota Bacteroidetes bacterium OLB10 1617421 LNBX00000000.1 Bac0006723 Acidobacteria bacterium OLB17 Pseudomonadati Acidobacteriota Acidobacteria bacterium OLB17 1617423 LLEU00000000.1 Bac0006724 Candidatus Hinthialibacteria bacterium OLB16 Candidatus Hinthialibacterota Candidatus Hinthialibacteria bacterium OLB16 1617433 LMZT00000000.1 Bac0006725 Geminocystis sp. NIES-3709 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Geminocystis Geminocystis sp. NIES-3709 1617448 NZ_AP014826.1 Bac0006726 Shigella flexneri 4c str. 1205 "Shigella flexneri 4c str. 1205 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is characterized as nonsporulating and thrives optimally at a temperature of 37.0°C, which coincides with the typical body temperature of its mammalian hosts. As a chemoorganotroph, S. flexneri 4c str. 1205 derives its energy from organic compounds, which is essential for its survival and growth in host-associated habitats. Furthermore, this bacterium exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels within the host environment.↵↵The combination of these traits suggests that S. flexneri 4c str. 1205 is well-adapted to colonizing the gastrointestinal tract of mammals, where it can exploit the available organic nutrients while being resilient to fluctuating oxygen conditions. This adaptability may contribute to its persistence and potential interactions within the microbiota of its host, highlighting the significance of studying this strain in the context of gut microbiome dynamics and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 1617964 NZ_CP012140.1 Bac0006727 Aliterella atlantica CENA595 Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Aliterellaceae Aliterella Aliterella atlantica 1618023 JYON00000000.1 Bac0006728 Puniceibacterium sp. IMCC21224 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Puniceibacterium Puniceibacterium sp. IMCC21224 1618204 LDPY00000000.1 Bac0006729 Parcubacteria group bacterium GW2011_GWC2_49_9 Parcubacteria group bacterium GW2011_GWC2_49_9 1618934 LCQH00000000.1 Bac0006730 Candidatus Magasanikbacteria bacterium GW2011_GWA2_42_32 Candidatus Magasanikiibacteriota Candidatus Magasanikbacteria bacterium GW2011_GWA2_42_32 1619039 LCDO00000000.1 Bac0006731 Candidatus Peregrinibacteria bacterium GW2011_GWF2_33_10 Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium GW2011_GWF2_33_10 1619065 LBOP00000000.1 Bac0006732 Candidatus Peregrinibacteria bacterium GW2011_GWF2_38_29 Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium GW2011_GWF2_38_29 1619066 LBUS00000000.1 Bac0006733 Bradyrhizobium sp. LTSP885 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. LTSP885 1619232 JYMT00000000.1 Bac0006734 Duffyella gerundensis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Duffyella Duffyella gerundensis 1619313 NZ_LN907828.1 Bac0006735 Bacteroidetes bacterium OLB12 Pseudomonadati Bacteroidota Bacteroidetes bacterium OLB12 1619897 LNFR00000000.1 Bac0006736 Spongiibacter sp. IMCC21906 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacter Spongiibacter sp. IMCC21906 1620392 NZ_CP011478.1 Bac0006737 Hoeflea sp. IMCC20628 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Hoeflea Hoeflea sp. IMCC20628 1620421 NZ_CP011481.1 Bac0006738 Listeria kieliensis str. Kiel-L1 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria kieliensis 1621700 LARY00000000.1 Bac0006739 Lutibacter profundi str. LP1 "Lutibacter profundi strain LP1 is a Gram-negative, rod-shaped bacterium that exhibits microaerophilic growth characteristics. This organism requires a reduced oxygen concentration for optimal growth, indicating its adaptation to environments with limited oxygen availability. The microaerophilic nature of Lutibacter profundi str. LP1 suggests a potential ecological role in environments where oxygen gradients are present, such as deep-sea sediments or anoxic zones.↵↵The Gram-negative classification of Lutibacter profundi str. LP1 implies the presence of an outer membrane containing lipopolysaccharides, which is characteristic of this group and may influence its interaction with surrounding microorganisms and the environment. The rod shape of the bacterium could enhance its motility and surface area for nutrient absorption, possibly contributing to its survival in nutrient-limited habitats.↵↵Overall, Lutibacter profundi str. LP1 exemplifies adaptations suited to specialized niches where microaerophilic conditions prevail, potentially playing a significant role in biogeochemical cycling within its environment. Understanding the physiological traits of this strain could provide insights into the functional diversity of microbial communities in oxygen-stratified ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lutibacter Lutibacter profundi Gram-negative rod non-motile microaerophile 1622118 NZ_CP013355.1 Bac0006740 Agathobaculum butyriciproducens Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Agathobaculum Agathobaculum butyriciproducens gut 1628085 QVFE00000000.1 Bac0006741 Agathobaculum butyriciproducens str. DSM 100391 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Agathobaculum Agathobaculum butyriciproducens gut 1628085 QEKJ00000000.1 Bac0006742 Rheinheimera salexigens str. KH87 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera salexigens 1628148 MKEK00000000.1 Bac0006743 Bacillus sp. LK2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. LK2 1628206 LDUK00000000.1 Bac0006744 Leclercia sp. LK8 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Leclercia sp. LK8 1628210 LDUO00000000.1 Bac0006745 Hahella sp. KA22 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Hahellaceae Hahella Hahella sp. KA22 1628392 NZ_CP034836.1 Bac0006746 Pseudomonas sp. ES3-33 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ES3-33 1628833 JZRI00000000.1 Bac0006747 Paraclostridium benzoelyticum str. JC272 "Paraclostridium benzoelyticum str. JC272 is a Gram-positive, rod-shaped bacterium that is characterized by its ability to form spores and thrive under anaerobic conditions. This organism exhibits heterotrophic, organotrophic, and chemotrophic metabolic pathways, allowing it to utilize a variety of organic compounds as energy sources. The optimal growth temperature for this strain is 32.0°C, which suggests a preference for mesophilic environments.↵↵As a spore-forming bacterium, Paraclostridium benzoelyticum str. JC272 possesses the capability to endure unfavorable environmental conditions, contributing to its survival and persistence in specific habitats. Its anaerobic requirement indicates that it is adapted to environments devoid of oxygen, which is typical for many members of the Clostridia class. ↵↵The metabolic versatility of Paraclostridium benzoelyticum str. JC272 may facilitate its role in the degradation of organic matter in anaerobic ecosystems, such as sediments or the gastrointestinal tracts of animals. This adaptability not only underscores its ecological significance but also suggests potential applications in biotechnological processes, such as bioremediation or the production of biofuels from organic waste. Understanding its metabolic pathways could provide insights into its ecological functions and interactions within microbial communities." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium benzoelyticum Gram-positive rod anaerobic 32 heterotroph; organotroph; chemotroph mesophilic spore-forming 1629550 LBBT00000000.1 Bac0006748 Peptococcaceae bacterium BRH_c8a Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Peptococcaceae bacterium BRH_c8a 1629715 LADP00000000.1 Bac0006749 Peptococcaceae bacterium BRH_c4b Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Peptococcaceae bacterium BRH_c4b 1629717 LADO00000000.1 Bac0006750 Dermabacter vaginalis str. AD1_86 "Dermabacter vaginalis strain AD1_86 is a Gram-positive, rod-shaped bacterium that thrives in the human vaginal environment. This strain exhibits a facultative aerobe/anaerobe metabolic capability, allowing it to adapt to varying oxygen levels within its habitat. Optimal growth occurs at a temperature of 37.0°C, which is consistent with the average human body temperature, suggesting a close association with human physiology.↵↵The presence of Dermabacter vaginalis in the vaginal microbiome may play a role in maintaining homeostasis and influencing the overall microbial community structure. The facultative nature of its oxygen requirement indicates that this bacterium can survive in both oxygen-rich and oxygen-poor conditions, potentially enabling it to occupy diverse niches within the vaginal ecosystem. Understanding the characteristics of Dermabacter vaginalis str. AD1_86 may provide insights into its functional role in the vaginal microbiome and its interactions with other microbial species, underscoring the importance of microbial diversity in female reproductive health." Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Dermabacter Dermabacter vaginalis Gram-positive rod non-motile facultative aerobe/anaerobe 37 mesophilic vagina 1630135 NZ_CP012117.1 Bac0006751 Sulfurovum riftiae str. 1812E "Sulfurovum riftiae strain 1812E is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0 °C. This organism is notable for its metabolic capabilities, which include the oxidation of sulfur compounds, suggesting a potential role in sulfur cycling within its environment. The Gram-negative nature of S. riftiae is indicative of a complex cell wall structure, comprising an outer membrane that may contribute to its survival in various anaerobic habitats.↵↵Research on similar strains has shown that members of the genus Sulfurovum are often found in marine environments, particularly in association with hydrothermal vents and other sulfur-rich ecosystems. While specific ecological interactions for strain 1812E have not been detailed, its metabolic traits align with those of other sulfur-oxidizing bacteria, which play critical roles in nutrient cycling and energy flow in their habitats.↵↵The ability of S. riftiae to utilize sulfur compounds in anaerobic conditions may also suggest a potential for biotechnological applications, such as in bioremediation processes aimed at sulfur pollution or in bioenergy production through sulfur cycling. Understanding the ecological role of this strain could provide insights into the dynamics of microbial communities in extreme environments where sulfur is a key resource." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum riftiae Gram-negative rod motile anaerobic 37 mesophilic 1630136 LNKT00000000.1 Bac0006752 Candidatus Nitrosoglobus terrae Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Candidatus Nitrosoglobus Candidatus Nitrosoglobus terrae 1630141 NZ_AP014837.1 Bac0006753 Bifidobacterium hapali "Bifidobacterium hapali is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is a member of the genus Bifidobacterium, which is well-known for its role in the gut microbiota of various hosts, particularly in humans and other mammals. ↵↵The Gram-positive nature of Bifidobacterium hapali suggests that it possesses a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria. This structural feature is important for maintaining cell integrity and may contribute to its resilience in various environments. Its rod shape is typical for members of the Bifidobacterium genus, which often exhibit a distinctive morphology that aids in their identification.↵↵Bifidobacterium hapali's aerobic requirement indicates that it relies on oxygen for its metabolic processes, which may influence its ecological niche within the microbiome. This trait could suggest a preference for environments where oxygen is available, potentially impacting its competition with other microbial species in the gut.↵↵Understanding the specific traits of Bifidobacterium hapali can provide insights into its potential functional roles within microbial communities, including its contributions to fermentation processes and the modulation of host immune responses. Further research may reveal its interactions with other gut microbiota and its overall impact on host health and metabolism." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium hapali Gram-positive rod non-motile aerobic 37 mesophilic 1630172 MWWY00000000.1 Bac0006754 Novosphingobium sp. MD-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. MD-1 1630648 BBXA00000000.1 Bac0006755 Gemmata sp. SH-PL17 Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata sp. SH-PL17 1630693 NZ_CP011271.1 Bac0006756 Mesorhizobium delmotii Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium delmotii 1631247 FUIG00000000.1 Bac0006757 Luteipulveratus halotolerans str. C296001 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Luteipulveratus Luteipulveratus halotolerans 1631356 LAIR00000000.1 Bac0006758 Paenibacillus sp. AR247 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. AR247 1631599 PCZT00000000.1 Bac0006759 Weissella jogaejeotgali str. FOL01 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella jogaejeotgali 1631871 NZ_CP014333.1 Bac0006760 Sulfuricella sp. T08 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sulfuricellaceae Sulfuricella Sulfuricella sp. T08 1632857 BBWF00000000.1 Bac0006761 Pirellula sp. SH-Sr6A Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula sp. SH-Sr6A 1632865 NZ_CP011272.1 Bac0006762 Bacteroidales bacterium Barb6XT Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium Barb6XT 1633202 LBCW00000000.1 Bac0006763 Candidatus Kryptonium thompsonii Pseudomonadati Candidatus Kryptoniota Candidatus Kryptonium Candidatus Kryptonium thompsonii 1633631 FAOP00000000.1 Bac0006764 Pokkaliibacter plantistimulans str. L1E11 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Balneatrichaceae Pokkaliibacter Pokkaliibacter plantistimulans 1635171 LAPT00000000.1 Bac0006765 Tenacibaculum holothuriorum str. S2-2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum holothuriorum 1635173 LAPZ00000000.1 Bac0006766 Halomonas sp. 54_146 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. 54_146 1635257 LGEN00000000.1 Bac0006767 Desulfonauticus sp. 38_4375 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfonauticaceae Desulfonauticus Desulfonauticus sp. 38_4375 1635258 LGER00000000.1 Bac0006768 Synergistales bacterium 58_81 Thermotogati Synergistota Synergistia Synergistales Synergistales bacterium 58_81 1635274 LGGV00000000.1 Bac0006769 Clostridia bacterium 41_269 Bacillati Bacillota Clostridia Clostridia bacterium 41_269 1635275 LGEZ00000000.1 Bac0006770 Thermoanaerobacterales bacterium 50_218 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacterales bacterium 50_218 1635288 LGFL00000000.1 Bac0006771 Thermotogales bacterium 46_20 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogales bacterium 46_20 1635293 LGGZ00000000.1 Bac0006772 Planctomyces sp. SH-PL62 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL62 1636152 NZ_CP011275.1 Bac0006773 Acinetobacter sp. ACNIH1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ACNIH1 1636603 NZ_CP026423.1 Bac0006774 Aeromonas sp. ASNIH1 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. ASNIH1 1636606 NZ_CP026228.1 Bac0006775 Burkholderia sp. ABCPW 11 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. ABCPW 11 1637859 LOVM00000000.1 Bac0006776 Burkholderia sp. LA-2-3-30-S1-D2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. LA-2-3-30-S1-D2 1637862 NZ_CP013385.1 Bac0006777 Burkholderia sp. MSMB1835 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. MSMB1835 1637876 LOYP00000000.1 Bac0006778 Azoarcus sp. PA01 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Azoarcus Azoarcus sp. PA01 1637998 LARU01000005.1 Bac0006779 Mangrovibacterium marinum str. DSM 28823 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Mangrovibacterium Mangrovibacterium marinum 1639118 QAAD00000000.1 Bac0006780 Citrobacter portucalensis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter portucalensis 1639133 NZ_CP039328.1 Bac0006781 Pontivivens insulae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pontivivens Pontivivens insulae 1639689 OMKW00000000.1 Bac0006782 Thaumarchaeota archaeon CSP1-1 Thermoproteati Nitrososphaerota Thaumarchaeota archaeon CSP1-1 1640512 LDXL00000000.1 Bac0006783 Chloroflexi bacterium CSP1-4 Bacillati Chloroflexota Chloroflexi bacterium CSP1-4 1640513 LDXM00000000.1 Bac0006784 Candidatus Sysuimicrobiota bacterium CSP1-3 Bacillati Candidatus Sysuimicrobiota Candidatus Sysuimicrobiota bacterium CSP1-3 1640515 LDXQ00000000.1 Bac0006785 candidate division NC10 bacterium CSP1-5 Methylomirabilota (SeqCode) candidate division NC10 bacterium CSP1-5 1640516 LDXR00000000.1 Bac0006786 Methanocalculus sp. 52_23 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocalculaceae Methanocalculus Methanocalculus sp. 52_23 1641382 LGGJ00000000.1 Bac0006787 Clostridiales bacterium 38_11 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium 38_11 1641393 LGGM00000000.1 Bac0006788 Methanomicrobiales archaeon 53_19 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiales archaeon 53_19 1641394 LGHF00000000.1 Bac0006789 Dermacoccus sp. PE3 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Dermacoccus Dermacoccus sp. PE3 1641401 LDCM00000000.1 Bac0006790 Pseudonocardia sp. HH130629-09 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. HH130629-09 1641402 NZ_CP011868.1 Bac0006791 Nonomuraea zeae str. DSM 100528 "Nonomuraea zeae strain DSM 100528 is a Gram-positive, aerobic actinomycete bacterium characterized by its filamentous growth form. This organism is part of the genus Nonomuraea, which is known for producing a variety of bioactive compounds, although specific metabolites produced by strain DSM 100528 have not been detailed. The aerobic requirement indicates that N. zeae thrives in environments rich in oxygen, which may influence its habitat preferences and interactions within microbial communities.↵↵The Gram-positive nature of N. zeae implies the presence of a thick peptidoglycan layer in its cell wall, a trait that is common among actinomycetes and contributes to its structural integrity and resistance to certain environmental stresses. Actinomycetes, including Nonomuraea species, are often found in soil and decaying organic matter, where they play crucial roles in nutrient cycling and organic matter decomposition.↵↵The ability of Nonomuraea zeae to survive and proliferate in oxygen-rich environments may facilitate its role in the degradation of complex organic compounds, thereby contributing to soil health and fertility. Additionally, as a member of the actinomycetes, it may participate in the production of secondary metabolites that could have implications for agricultural applications or biotechnological innovations. Understanding N. zeae’s ecological role could further our knowledge of microbial interactions within its habitat and its potential applications in bioremediation and natural product discovery." Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea zeae Gram-positive aerobic 1642303 VCKX00000000.1 Bac0006792 Aquimarina aggregata str. RZW4-3-2 "Aquimarina aggregata strain RZW4-3-2 is a Gram-negative, rod-shaped bacterium that exhibits an optimal growth temperature of 29.0°C and requires aerobic conditions for its metabolism. This organism is a member of the genus Aquimarina, which is known for its marine habitat associations. The rod shape of A. aggregata str. RZW4-3-2 may facilitate its motility and nutrient uptake in aquatic environments, where diffusion is a critical factor for microbial survival and growth.↵↵The preference for aerobic conditions suggests that this strain utilizes oxygen for energy production, likely through aerobic respiration pathways. The optimal temperature of 29.0°C indicates that A. aggregata str. RZW4-3-2 thrives in mildly warm marine environments, which could include coastal areas or warmer oceanic regions where nutrient availability is high.↵↵Understanding the physiological traits of A. aggregata str. RZW4-3-2 can provide insights into its potential roles in marine ecosystems, particularly in nutrient cycling and the degradation of organic matter. Given its aerobic nature, this strain may contribute to the microbial community dynamics in oxygen-rich habitats, where it could play a role in promoting the health of marine ecosystems by participating in the breakdown of organic materials and influencing the availability of nutrients for other organisms. This highlights the importance of A. aggregata str. RZW4-3-2 in maintaining ecological balance within its environment." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aquimarina Aquimarina aggregata Gram-negative rod motile aerobic 29 mesophilic 1642818 LQRT00000000.1 Bac0006793 Sphingobacterium sp. Ag1 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. Ag1 1643451 LBGU00000000.1 Bac0006794 Bacillus sp. CHD6a Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. CHD6a 1643452 LBMD00000000.1 Bac0006795 Calidithermus roseus str. NBRC 110900 Thermotogati Deinococcota Deinococci Thermales Thermaceae Calidithermus Calidithermus roseus 1644118 QWLA00000000.1 Bac0006796 Janthinobacterium sp. 1_2014MBL_MicDiv Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 NZ_CP011319.1 Bac0006797 Lysobacter silvestris str. AM20-91 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Solilutibacter Solilutibacter silvestris 1645665 NPZB00000000.1 Bac0006798 Rouxiella silvae str. 323 "Rouxiella silvae strain 323 is a Gram-negative, rod-shaped bacterium with the capability to thrive in both aerobic and anaerobic environments, indicating its facultative metabolism. This adaptability allows R. silvae str. 323 to utilize various metabolic pathways depending on the availability of oxygen, making it a versatile organism in fluctuating environmental conditions. The Gram-negative nature of this strain suggests the presence of an outer membrane containing lipopolysaccharides, which may play a role in its interactions with other microorganisms as well as its resilience in diverse habitats.↵↵The rod shape of R. silvae str. 323 is characteristic of many members within its genus, which may influence its motility and colonization abilities in various ecosystems. The ability to adapt to both oxygen-rich and oxygen-poor conditions potentially positions R. silvae str. 323 as an important player in organic matter decomposition processes, particularly in environments where oxygen levels are variable. This metabolic flexibility may also facilitate its role in nutrient cycling within its ecological niche.↵↵Overall, the traits of Rouxiella silvae str. 323 underscore its potential ecological significance, particularly in environments that experience dynamic changes in oxygen availability, highlighting its role in maintaining microbial diversity and ecosystem stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rouxiella Rouxiella silvae Gram-negative rod facultative aerobe/anaerobe 1646373 MRWD00000000.1 Bac0006799 Citromicrobium sp. RCC1885 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Citromicrobium Citromicrobium sp. RCC1885 1647104 LBLY00000000.1 Bac0006800 Anabaena sp. WA102 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena sp. WA102 1647413 NZ_CP011457.1 Bac0006801 Aurantiacibacter atlanticus str. s21-N3 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter atlanticus 1648404 NZ_CP015441.1 Bac0006802 Bacillus paralicheniformis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus paralicheniformis 1648923 NZ_CP068988.1 Bac0006803 Streptomyces sp. CFMR 7 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CFMR 7 1649184 NZ_CP011523.1 Bac0006804 Janthinobacterium sp. KBS0711 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. KBS0711 1649647 LBCO00000000.1 Bac0006805 Pseudomonas sp. CCOS 191 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. CCOS 191 1649877 NZ_LN847264.1 Bac0006806 Thermoproteus sp. CP80 Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus sp. CP80 1650659 LCWM00000000.2 Bac0006807 Candidatus Entotheonella serta str. TSWA1 Pseudomonadati Candidatus Tectimicrobiota Candidatus Entotheonellia Candidatus Entotheonellales Candidatus Entotheonellaceae Candidatus Entotheonella Candidatus Entotheonella serta 1652106 PPXO00000000.1 Bac0006808 Corynebacterium crudilactis str. JZ16 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium crudilactis 1652495 NZ_CP015622.1 Bac0006809 Arthrobacter sp. YC-RL1 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. YC-RL1 1652545 LCYH00000000.1 Bac0006810 Halanaerobium sp. DL-01 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium sp. DL-01 1653064 QPJN00000000.1 Bac0006811 Sellimonas intestinalis "Sellimonas intestinalis is a Gram-positive, non-spore-forming bacterium that exhibits anaerobic growth, with an optimal temperature of 37.0°C. This microbe is characterized by its ability to thrive in oxygen-deprived environments, which suggests a specialized adaptation to anaerobic habitats, possibly within the gastrointestinal tracts of hosts. ↵↵As a member of the microbiome, S. intestinalis may play a significant role in the fermentation of dietary fibers and other substrates, contributing to the overall metabolic processes within its ecological niche. Its growth at physiological temperature indicates a potential commensal relationship in warm-blooded animals, where it may be involved in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. ↵↵The absence of sporulation in S. intestinalis further highlights its adaptation to stable environments where sporulation may not confer a survival advantage. This trait suggests a reliance on a consistent anaerobic milieu for survival and growth. Understanding the specific interactions and contributions of S. intestinalis within its ecosystem can provide insights into the complex dynamics of gut microbiota and their implications for host physiology and health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Sellimonas intestinalis Gram-positive anaerobic 37 mesophilic non-spore-forming 1653434 QVLX00000000.1 Bac0006812 Leeuwenhoekiella nanhaiensis str. G18 "Leeuwenhoekiella nanhaiensis str. G18 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. As a heterotroph, this microbe relies on organic compounds as its energy source, indicating a metabolic flexibility that allows it to utilize a variety of substrates. Additionally, L. nanhaiensis str. G18 is strictly aerobic, necessitating oxygen for its growth and metabolic processes.↵↵This bacterium's adaptation to aerobic conditions and preference for moderate temperatures suggest its potential role in environments that exhibit similar ecological characteristics, such as marine habitats or temperate zones where organic matter is prevalent. The ability of L. nanhaiensis str. G18 to efficiently metabolize organic materials could contribute to nutrient cycling within its ecosystem, possibly influencing community dynamics and the availability of resources for other microorganisms. Its isolation and characterization could provide insights into the diversity and functionality of microbial life in specific habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella nanhaiensis Gram-negative rod motile aerobic 29 heterotroph mesophilic 1655491 NQXA00000000.1 Bac0006813 Campylobacter vulpis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter vulpis 1655500 LDWY00000000.1 Bac0006814 Polaribacter sp. BACL8 MAG-120531-bin13 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. BACL8 MAG-120531-bin13 1655554 LICK00000000.1 Bac0006815 Cryomorphaceae bacterium BACL21 MAG-121220-bin10 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Cryomorphaceae Cryomorphaceae bacterium BACL21 MAG-121220-bin10 1655592 LICC00000000.1 Bac0006816 Cryomorphaceae bacterium BACL22 MAG-120619-bin32 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Cryomorphaceae Cryomorphaceae bacterium BACL22 MAG-120619-bin32 1655630 LIDG00000000.1 Bac0006817 OM182 bacterium BACL3 MAG-120924-bin41 Pseudomonadati Pseudomonadota Gammaproteobacteria OM182 bacterium BACL3 MAG-120924-bin41 1655632 LIDJ00000000.1 Bac0006818 Peptococcaceae bacterium 1109 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Peptococcaceae bacterium 1109 1655638 LDJB00000000.1 Bac0006819 Alteromonas confluentis Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas confluentis 1656094 MDHN00000000.1 Bac0006820 Mitsuaria sp. 7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Mitsuaria sp. 7 1658665 NZ_CP011514.1 Bac0006821 Marinobacter subterrani str. JG233 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter subterrani 1658765 LFBU00000000.1 Bac0006822 Fructobacillus sp. EFB-N1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructobacillus Fructobacillus sp. EFB-N1 1658766 LDUY00000000.1 Bac0006823 Campylobacter pinnipediorum subsp. pinnipediorum str. RM17260 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter pinnipediorum 1660067 NZ_CP012546.1 Bac0006824 Campylobacter vicugnae Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter vicugnae 1660076 NZ_CP018792.1 Bac0006825 Acidovorax sp. SCN 65-108 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. SCN 65-108 1660085 MEDK00000000.1 Bac0006826 Agrobacterium sp. SCN 61-19 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. SCN 61-19 1660088 MEDN00000000.1 Bac0006827 Bordetella sp. SCN 67-23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella sp. SCN 67-23 1660091 MEDQ00000000.1 Bac0006828 Chryseobacterium sp. SCN 40-13 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. SCN 40-13 1660093 MEDR00000000.1 Bac0006829 Niastella sp. SCN 39-18 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niastella Niastella sp. SCN 39-18 1660119 MEEN00000000.1 Bac0006830 Novosphingobium sp. SCN 66-18 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. SCN 66-18 1660121 MEGD00000000.1 Bac0006831 Pelagibacterium sp. SCN 63-126 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Pelagibacterium Pelagibacterium sp. SCN 63-126 1660123 MEET00000000.1 Bac0006832 Pelagibacterium sp. SCN 63-23 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Pelagibacterium Pelagibacterium sp. SCN 63-23 1660124 MEEU00000000.1 Bac0006833 Phenylobacterium sp. SCN 70-31 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium sp. SCN 70-31 1660129 MEEX00000000.1 Bac0006834 Pseudonocardia sp. SCN 73-27 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. SCN 73-27 1660132 MEGH00000000.1 Bac0006835 Rhodanobacter sp. SCN 66-43 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. SCN 66-43 1660135 MEGK00000000.1 Bac0006836 Thiobacillus sp. SCN 65-179 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus sp. SCN 65-179 1660144 MEGN00000000.1 Bac0006837 Acidobacteria bacterium SCN 69-37 Pseudomonadati Acidobacteriota Acidobacteria bacterium SCN 69-37 1660160 MEDJ00000000.1 Bac0006838 Acidobacteria bacterium Mor1 Pseudomonadati Acidobacteriota Acidobacteria bacterium Mor1 1660251 CP011806.1 Bac0006839 Haemophilus sp. C1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus sp. C1 1661745 LDVZ00000000.1 Bac0006840 Methylophilus sp. TWE2 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylophilus Methylophilus sp. TWE2 1662285 NZ_CP012020.1 Bac0006841 Shimia abyssi str. DSM 100673 "Shimia abyssi strain DSM 100673 is a Gram-negative, aerobic microbe characterized by its unique star or dumbbell shape and pleomorphic morphology. This organism does not form spores and thrives optimally at a temperature of 25.0°C. Shimia abyssi is classified as an organotroph and chemotroph, indicating its reliance on organic compounds for energy and its ability to oxidize them in the presence of oxygen. ↵↵The distinct morphology of Shimia abyssi, alongside its metabolic capabilities, suggests that it may occupy specific ecological niches where organic substrates are readily available, potentially within marine environments or other organic-rich habitats. The absence of sporulation may indicate a lifestyle that relies on stable environmental conditions, as sporulation typically serves as a survival strategy in fluctuating environments. Further investigation into its ecological role could provide insights into its interactions with other microorganisms and its contributions to biogeochemical cycles in its native habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia abyssi Gram-negative star/dumbbell/pleomorphic non-motile aerobic 25 organotroph; chemotroph mesophilic non-spore-forming 1662395 PYGJ00000000.1 Bac0006842 Pedobacter sp. BMA Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. BMA 1663685 LECU00000000.1 Bac0006843 Bacillus glycinifermentans Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus glycinifermentans gut; human gut microbiota 1664069 LECW00000000.2 Bac0006844 Bacillus sp. LL01 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. LL01 1665556 LFEL00000000.1 Bac0006845 Phormidium sp. OSCR Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Phormidium Phormidium sp. OSCR 1666905 LJZT00000000.1 Bac0006846 Erythrobacteraceae bacterium HL-111 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacteraceae bacterium HL-111 1666908 LJSW00000000.1 Bac0006847 Roseibaca calidilacus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Roseinatronobacter Roseibaca calidilacus 1666912 LJSG00000000.1 Bac0006848 Rhodobacteraceae bacterium HLUCCA08 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium HLUCCA08 1666913 LJSF00000000.1 Bac0006849 Rhodobacteraceae bacterium HLUCCO07 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium HLUCCO07 1666914 LJSU00000000.1 Bac0006850 Rhodobacteraceae bacterium HLUCCA12 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium HLUCCA12 1666916 LJSV00000000.1 Bac0006851 Rhodobacteraceae bacterium HLUCCO18 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium HLUCCO18 1666917 LJSY00000000.1 Bac0006852 Clostridium sp. C8 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. C8 1667357 LBMX00000000.1 Bac0006853 Acetobacter sp. DsW_54 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter sp. DsW_54 1670660 JOPD00000000.1 Bac0006854 Ruminococcus sp. DSM 100440 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. DSM 100440 1671366 LFIL00000000.1 Bac0006855 Rathayibacter tanaceti Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter tanaceti 1671680 LIIN00000000.1 Bac0006856 Vibrio tapetis subsp. tapetis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tapetis 1671868 NZ_LT960613.1 Bac0006857 Acinetobacter albensis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter albensis aerobic 1673609 FMBK00000000.1 Bac0006858 Borreliella mayonii Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella mayonii 1674146 NZ_CP015801.1 Bac0006859 Peribacillus cavernae str. L5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus cavernae 1674310 RYZZ00000000.1 Bac0006860 Thermococcus sp. 2319x1 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 2319x1 1674923 NZ_CP012200.1 Bac0006861 Acinetobacter genomosp. 33YU Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter genomosp. 33YU 1675530 LFZS00000000.1 Bac0006862 Sulfurifustis variabilis Pseudomonadati Pseudomonadota Gammaproteobacteria Acidiferrobacterales Acidiferrobacteraceae Sulfurifustis Sulfurifustis variabilis microaerophile 1675686 NZ_AP014936.1 Bac0006863 Paenibacillus sp. 1011MAR3C5 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 1011MAR3C5 1675787 QZCF00000000.1 Bac0006864 Paracoccus onubensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus onubensis 1675788 QZCG00000000.1 Bac0006865 Acidovorax cavernicola str. 1011MAR4D40.2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax cavernicola 1675792 QXMN00000000.1 Bac0006866 Xylanibacter rarus Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Xylanibacter Xylanibacter rarus 1676614 LFQU00000000.1 Bac0006867 Propionispora sp. 2/2-37 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Propionispora Propionispora sp. 2/2-37 1677858 CYSP00000000.1 Bac0006868 Bacillus sp. MUM 116 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MUM 116 1678002 MLYR00000000.1 Bac0006869 Streptomyces monashensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces monashensis 1678012 MLYO00000000.1 Bac0006870 Massilia sp. NR 4-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. NR 4-1 1678028 NZ_CP012201.1 Bac0006871 Limnohabitans sp. 63ED37-2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. 63ED37-2 1678128 NZ_CP011774.1 Bac0006872 Streptomyces caatingaensis str. CMAA 1322 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces caatingaensis 1678637 LFXA00000000.1 Bac0006873 Natrarchaeobius oligotrophus Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobius Natrarchaeobius oligotrophus 1679083 REFZ00000000.1 Bac0006874 Halococcoides cellulosivorans str. HArcel1T Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halococcoides Halococcoides cellulosivorans 1679096 NZ_CP028858.1 Bac0006875 Bacillus sp. FJAT-27231 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-27231 1679168 LFZU00000000.1 Bac0006876 Haladaptatus sp. R4 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus sp. R4 1679489 LWHG00000000.1 Bac0006877 Variovorax gossypii str. DSM 100435 "Variovorax gossypii str. DSM 100435 is a Gram-negative, rod-shaped bacterium that is characterized as non-spore-forming and requires oxygen for its metabolic processes. This organism is part of the diverse genus Variovorax, which is known for its versatility in utilizing various carbon sources. The aerobic nature of V. gossypii suggests it plays a role in environments where oxygen is available, potentially contributing to biogeochemical cycles and organic matter decomposition.↵↵The rod shape of V. gossypii is typical of many aerobic bacteria, facilitating its motility and interaction with its surrounding environment. The absence of sporulation indicates a reliance on aerobic conditions for survival and growth, which may limit its habitat to environments where such conditions are consistently met. ↵↵Given its traits, Variovorax gossypii str. DSM 100435 may be involved in the degradation of organic compounds in soil or aquatic systems, particularly in environments rich in plant material, as suggested by the species name ""gossypii,"" which implies a potential association with cotton. This characteristic may provide insights into its ecological role, particularly in the context of bioremediation or nutrient cycling in agricultural settings." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax gossypii Gram-negative rod aerobic non-spore-forming 1679495 RXOE00000000.1 Bac0006878 Caulobacter flavus str. RHGG3 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter flavus 1679497 NZ_CP026100.1 Bac0006879 Bradyrhizobium sp. AS23.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. AS23.2 1680155 LGHM00000000.1 Bac0006880 Xanthomonas sp. ISO98C4 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas sp. ISO98C4 1680158 NZ_CP012061.1 Bac0006881 Ventosimonas gracilis "Ventosimonas gracilis is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism, thriving optimally at a temperature of 37.0°C. This organism belongs to a group of microbes characterized by their ability to utilize oxygen for energy production, which may suggest a potential role in aerobic environments, such as soil or aquatic systems. ↵↵The Gram-negative nature of Ventosimonas gracilis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, a feature that can influence its interaction with other microorganisms and its resilience in various environments. The rod shape may confer advantages in motility and nutrient uptake, facilitating its adaptation to diverse habitats.↵↵The optimal growth temperature of 37.0°C aligns with the thermal preferences of many mesophilic bacteria, which are commonly found in environments with moderate temperatures, including those associated with warm-blooded animals. This trait may hint at potential associations with specific ecological niches or host organisms, although such relationships require further investigation.↵↵Understanding the physiological traits of Ventosimonas gracilis can provide insights into its ecological roles, particularly in nutrient cycling and interactions within microbial communities. Its aerobic nature suggests that it may contribute to processes such as organic matter decomposition, influencing the dynamics of nutrient availability in its habitat. Further research into its metabolic pathways could unveil additional functional capabilities, enhancing our understanding of its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Ventosimonadaceae Ventosimonas Ventosimonas gracilis Gram-negative rod non-motile aerobic 37 mesophilic 1680762 LSZO00000000.1 Bac0006882 Arthrobacter sp. RIT-PI-e Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. RIT-PI-e 1681197 LGIU00000000.1 Bac0006883 Flavobacterium aquicola str. DSM 100880 "Flavobacterium aquicola str. DSM 100880 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. This strain does not form spores and has an optimal growth temperature of 25.0°C, suggesting a preference for mesophilic environments. ↵↵The non-spore-forming nature of F. aquicola str. DSM 100880 indicates that it may rely on environmental conditions for persistence and survival rather than employing sporulation as a survival strategy. Its capacity for facultative anaerobic growth further highlights its adaptability to diverse ecological niches, where it can utilize both aerobic and anaerobic pathways for energy production.↵↵Research into the specific ecological roles of Flavobacterium species often indicates associations with aquatic environments, potentially contributing to the decomposition of organic matter and nutrient cycling. The optimal growth temperature of 25.0°C aligns with typical conditions found in freshwater habitats, where it may play a role in the microbial community dynamics. Understanding the metabolic capabilities and ecological interactions of F. aquicola could provide insights into its contribution to aquatic ecosystems, particularly in biogeochemical processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aquicola Gram-negative rod motile facultative aerobe/anaerobe 25 mesophilic non-spore-forming 1682742 QUNI00000000.1 Bac0006884 Exiguobacterium sp. BMC-KP Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. BMC-KP 1684312 LGIW00000000.1 Bac0006885 Novosphingobium sp. ST904 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. ST904 1684385 LGJH00000000.1 Bac0006886 Halomonas sp. G11 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. G11 1684425 LYXG00000000.1 Bac0006887 Chryseobacterium glaciei str. IHBB 10212 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium glaciei 1685010 NZ_CP015200.1 Bac0006888 miscellaneous Crenarchaeota group-6 archaeon AD8-1 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia miscellaneous Crenarchaeota group-6 archaeon AD8-1 1685126 LFWW00000000.1 Bac0006889 miscellaneous Crenarchaeota group archaeon SMTZ1-55 Thermoproteati Candidatus Bathyarchaeota miscellaneous Crenarchaeota group archaeon SMTZ1-55 1685133 LFWX00000000.1 Bac0006890 miscellaneous Crenarchaeota group archaeon SMTZ-80 Thermoproteati Candidatus Bathyarchaeota miscellaneous Crenarchaeota group archaeon SMTZ-80 1685135 LFWY00000000.1 Bac0006891 Microbulbifer sp. ZGT114 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer sp. ZGT114 1685377 LQBR00000000.1 Bac0006892 Ruegeria profundi str. ZGT108 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria profundi 1685378 LQBP00000000.1 Bac0006893 Ruegeria marisrubri str. ZGT118 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria marisrubri 1685379 LQBQ00000000.1 Bac0006894 Methylibium sp. NZG Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Methylibium Methylibium sp. NZG 1686064 LGRD00000000.1 Bac0006895 Bartonella apis str. PEB0149 "Bartonella apis str. PEB0149 is a Gram-negative, rod-shaped bacterium that belongs to the genus Bartonella. This organism is notable for its unique morphological characteristics, which contribute to its identification and classification within the Bartonella group. While specific ecological roles and pathogenicity have not been detailed for this strain, members of the Bartonella genus are generally known to inhabit the blood of various vertebrate hosts and have been associated with a range of ecological niches. ↵↵The Gram-negative nature of Bartonella apis str. PEB0149 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structural feature may influence its interactions with host organisms and the surrounding environment, potentially affecting its adaptability and survival strategies.↵↵Research on Bartonella species often highlights their complex life cycles and transmission dynamics, which may involve vectors. Understanding the traits of Bartonella apis str. PEB0149 could provide insights into the ecological interactions that underpin the relationships between these bacteria, their hosts, and potential vectors. In particular, the study of this strain could shed light on its role in the microbial community associated with pollinators, contributing to the overall health and function of ecosystems where these insects are present." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Ditibartonella Ditibartonella apis Gram-negative rod 1686310 LXYT00000000.1 Bac0006896 Citrobacter sp. MGH103 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. MGH103 1686378 NZ_CP073045.1 Bac0006897 Citrobacter sp. MGH105 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. MGH105 1686380 NZ_CP073048.1 Bac0006898 Citrobacter sp. MGH109 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. MGH109 1686382 LESR00000000.1 Bac0006899 Streptomyces spongiicola str. HNM0071 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces spongiicola 1690221 NZ_CP029254.1 Bac0006900 Streptomyces spongiicola str. 531S Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces spongiicola 1690221 BGZL00000000.1 Bac0006901 Frigoribacterium sp. RIT-PI-h Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. RIT-PI-h 1690245 LHOZ00000000.1 Bac0006902 Pseudomonas sp. RIT-PI-q Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RIT-PI-q 1690247 LHPC00000000.1 Bac0006903 Betaproteobacteria bacterium UKL13-2 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium UKL13-2 1690485 CP012157.1 Bac0006904 Pseudonocardia sp. HH130630-07 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. HH130630-07 1690815 NZ_CP013854.1 Bac0006905 Mangrovibacter phragmitis str. MP23 "Mangrovibacter phragmitis str. MP23 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in various oxygen environments. This strain has an optimal growth temperature of 29.0 °C, indicating a preference for moderately warm conditions, which may reflect its adaptation to specific ecological niches.↵↵The Gram-negative nature of M. phragmitis str. MP23 suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a feature that can influence its interactions with other microorganisms and the environment. The rod shape of the bacterium may facilitate motility and colonization in its habitat, potentially enhancing its survival in competitive microbial communities.↵↵Due to its facultative metabolism, M. phragmitis str. MP23 is capable of utilizing various substrates under both aerobic and anaerobic conditions, which may provide it with a metabolic advantage in fluctuating environmental oxygen levels. This adaptability could enable the strain to occupy diverse ecological niches, particularly in environments where oxygen availability is variable.↵↵Overall, the traits of Mangrovibacter phragmitis str. MP23 suggest that it may play a significant role in biogeochemical processes within its habitat, potentially contributing to the degradation of organic matter in anaerobic conditions or participating in nutrient cycling in more oxygenated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Mangrovibacter Mangrovibacter phragmitis Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 1691903 LYRP00000000.1 Bac0006906 Microbacterium sp. GCS4 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. GCS4 1692239 LGYE00000000.1 Bac0006907 Neisseria sp. 83E34 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. 83E34 1692264 LGYH00000000.1 Bac0006908 Methylobacterium sp. ARG-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. ARG-1 1692501 LHCD00000000.1 Bac0006909 Paenibacillus sp. 32O-W Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 32O-W 1695218 NZ_CP013653.1 Bac0006910 Pseudoprimorskyibacter insulae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudoprimorskyibacter Pseudoprimorskyibacter insulae 1695997 OMOJ00000000.1 Bac0006911 Pelagibacteraceae bacterium GOM-A1 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Pelagibacteraceae bacterium GOM-A1 1696173 LHBX00000000.1 Bac0006912 candidate division MSBL1 archaeon SCGC-AAA833F18 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA833F18 1698257 LHYO00000000.1 Bac0006913 candidate division MSBL1 archaeon SCGC-AAA259D14 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259D14 1698261 LHXL00000000.1 Bac0006914 candidate division MSBL1 archaeon SCGC-AAA259E17 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259E17 1698263 LHXN00000000.1 Bac0006915 candidate division MSBL1 archaeon SCGC-AAA259E19 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259E19 1698264 LHXO00000000.1 Bac0006916 candidate division MSBL1 archaeon SCGC-AAA259E22 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259E22 1698265 LHXP00000000.1 Bac0006917 candidate division MSBL1 archaeon SCGC-AAA259I07 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259I07 1698266 LHXQ00000000.1 Bac0006918 candidate division MSBL1 archaeon SCGC-AAA259I09 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259I09 1698267 LHXR00000000.1 Bac0006919 candidate division MSBL1 archaeon SCGC-AAA259M10 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259M10 1698270 LHXU00000000.1 Bac0006920 candidate division MSBL1 archaeon SCGC-AAA259O05 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259O05 1698271 LHXV00000000.1 Bac0006921 candidate division MSBL1 archaeon SCGC-AAA261F19 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA261F19 1698275 LHXZ00000000.1 Bac0006922 candidate division MSBL1 archaeon SCGC-AAA261G05 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA261G05 1698276 LHYA00000000.1 Bac0006923 candidate division MSBL1 archaeon SCGC-AAA261O19 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA261O19 1698277 LHYB00000000.1 Bac0006924 candidate division MSBL1 archaeon SCGC-AAA382A03 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA382A03 1698278 LHYC00000000.1 Bac0006925 candidate division MSBL1 archaeon SCGC-AAA382A13 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA382A13 1698279 LHYD00000000.1 Bac0006926 candidate division MSBL1 archaeon SCGC-AAA382A20 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA382A20 1698280 LHYE00000000.1 Bac0006927 candidate division MSBL1 archaeon SCGC-AAA382F02 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA382F02 1698282 LHYG00000000.1 Bac0006928 candidate division MSBL1 archaeon SCGC-AAA382K21 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA382K21 1698283 LHYH00000000.1 Bac0006929 candidate division MSBL1 archaeon SCGC-AAA382N08 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA382N08 1698285 LHYJ00000000.1 Bac0006930 candidate division MSBL1 archaeon SCGC-AAA385D11 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA385D11 1698286 LHYK00000000.1 Bac0006931 candidate division MSBL1 archaeon SCGC-AAA385M02 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA385M02 1698287 LHYL00000000.1 Bac0006932 candidate division MSBL1 archaeon SCGC-AAA385M11 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA385M11 1698288 LHYM00000000.1 Bac0006933 Geobacillus sp. PA-3 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. PA-3 1699078 LIDX00000000.1 Bac0006934 Psychrobacter sp. P11F6 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. P11F6 1699621 NZ_CM003594.1 Bac0006935 Psychrobacter sp. P11G3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. P11G3 1699623 NZ_CM003598.1 Bac0006936 Psychrobacter sp. P11G5 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. P11G5 1699624 NZ_CP012536.1 Bac0006937 Candidatus Bathyarchaeota archaeon BA1 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon BA1 1700835 LIHJ00000000.1 Bac0006938 Loktanella sp. 1ANDIMAR09 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Loktanella Loktanella sp. 1ANDIMAR09 1700845 LIGP00000000.1 Bac0006939 Lysinibacillus sp. F5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. F5 1700846 LKIE00000000.1 Bac0006940 Agrobacterium sp. SUL3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. SUL3 1701910 LGZB00000000.1 Bac0006941 Pseudoalteromonas sp. SW0106-04 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. SW0106-04 1702169 BCAI00000000.1 Bac0006942 Faecalibaculum rodentium Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Faecalibaculum Faecalibaculum rodentium 1702221 MPJZ00000000.1 Bac0006943 Faecalibaculum rodentium str. Alo17 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Faecalibaculum Faecalibaculum rodentium 1702221 NZ_CP011391.1 Bac0006944 Chelatococcus sp. CO-6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Chelatococcaceae Chelatococcus Chelatococcus sp. CO-6 1702325 NZ_CP012399.1 Bac0006945 Citrobacter sp. CRE-46 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. CRE-46 1703250 NZ_CP029728.1 Bac0006946 Betaproteobacteria bacterium SG8_41 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium SG8_41 1703391 LJTT00000000.1 Bac0006947 Omnitrophica WOR_2 bacterium SM23_72 Pseudomonadati Candidatus Omnitrophota Omnitrophica WOR_2 bacterium SM23_72 1703777 LJUU00000000.1 Bac0006948 Latescibacteria bacterium DG_63 Pseudomonadati Candidatus Latescibacterota Latescibacteria bacterium DG_63 1703781 LJNC00000000.1 Bac0006949 Streptomyces sp. CB02058 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02058 1703921 LIPG00000000.1 Bac0006950 Streptomyces sp. CB01249 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB01249 1703929 LISW00000000.1 Bac0006951 Kitasatospora sp. CB01950 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. CB01950 1703930 LISX00000000.1 Bac0006952 Streptomyces sp. CB02366 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02366 1703935 LIVT00000000.1 Bac0006953 Streptomyces sp. CB03234 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB03234 1703937 LIYH00000000.1 Bac0006954 Rhizobium sp. N113 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. N113 1703960 NZ_CP013517.1 Bac0006955 Arthrobacter sp. ERGS1:01 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. ERGS1:01 1704044 NZ_CP012478.1 Bac0006956 Lysinibacillus sp. FJAT-14745 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. FJAT-14745 1704289 LITM00000000.1 Bac0006957 Burkholderia sp. IDO3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. IDO3 1705310 NWSG00000000.1 Bac0006958 Chryseobacterium sp. ERMR1:04 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. ERMR1:04 1705393 LIRF00000000.1 Bac0006959 Haloarcula rubripromontorii Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula rubripromontorii 1705562 LIUF00000000.1 Bac0006960 Candidatus Methanofastidiosum methylthiophilus Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia Candidatus Methanofastidiosales Candidatus Methanofastidiosaceae Candidatus Methanofastidiosum Candidatus Methanofastidiosum methylothiophilum 1705564 LNJD00000000.1 Bac0006961 Janthinobacterium sp. CG23_2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. CG23_2 1706231 FAOS00000000.1 Bac0006962 Candidatus Thorarchaeota archaeon SMTZ1-45 Promethearchaeati Candidatus Thorarchaeota Candidatus Thorarchaeota archaeon SMTZ1-45 1706444 LRSL00000000.1 Bac0006963 Candidatus Thorarchaeota archaeon SMTZ1-83 Promethearchaeati Candidatus Thorarchaeota Candidatus Thorarchaeota archaeon SMTZ1-83 1706445 LRSK00000000.1 Bac0006964 Heyndrickxia camelliae Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia camelliae 1707093 PIQO00000000.1 Bac0006965 Chloroflexus islandicus str. isl-2 "Chloroflexus islandicus str. isl-2 is a Gram-negative, filamentous microbe known for its metabolic versatility, functioning as a heterotroph, organotroph, chemotroph, and phototroph. This remarkable adaptability allows it to derive energy from a variety of organic compounds and light, contributing to its ecological flexibility in diverse environments. ↵↵Optimal growth occurs at a temperature of 45.0°C, indicating a preference for thermophilic conditions commonly associated with hot springs or geothermal environments. Notably, Chloroflexus islandicus str. isl-2 does not form spores, which suggests that it relies on other survival strategies in fluctuating environmental conditions. ↵↵The ability to utilize multiple energy sources positions Chloroflexus islandicus str. isl-2 as a potential player in biogeochemical cycles, particularly in nutrient-rich thermal ecosystems where both organic matter and light are available. This metabolic versatility may facilitate its role in the degradation of organic materials and the cycling of carbon in its native habitat, underlining the importance of such microbes in maintaining ecological balance within thermal environments." Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus islandicus Gram-negative filament motile 45 heterotroph; organotroph; chemotroph; phototroph thermophilic non-spore-forming 1707952 LWQS00000000.1 Bac0006966 Pseudoalteromonas sp. R3 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. R3 1709477 NZ_CP034834.1 Bac0006967 Anabaena sp. MDT14b Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena sp. MDT14b 1710886 LJOV00000000.1 Bac0006968 Anabaena sp. CRKS33 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena sp. CRKS33 1710888 LJOT00000000.1 Bac0006969 Anabaena sp. WA113 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena sp. WA113 1710889 LJOS00000000.1 Bac0006970 Aphanizomenon flos-aquae LD13 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae 1710894 LJOY00000000.1 Bac0006971 Rheinheimera sp. EpRS3 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sp. EpRS3 1712383 LNQS00000000.1 Bac0006972 Pseudomonas sp. 2822-15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 2822-15 1712677 LJRY00000000.1 Bac0006973 Microbispora catharanthi Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Microbispora Microbispora catharanthi 1712871 VDMA00000000.2 Bac0006974 Domibacillus mangrovi str. SAOS 44 "Domibacillus mangrovi strain SAOS 44 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolism. This microbe thrives at an optimal temperature of 29.0°C, indicating a preference for moderate environmental conditions that may align with specific ecological niches. ↵↵As a spore-forming organism, D. mangrovi str. SAOS 44 possesses the capability to withstand adverse conditions, which may enhance its survival in fluctuating environments such as mangrove ecosystems. The capacity for sporulation is a significant trait, as it allows the bacterium to endure periods of nutrient scarcity or other stressors that could be detrimental to non-spore-forming cells.↵↵The aerobic nature of this strain suggests that it relies on oxygen for its metabolic processes, which may influence its distribution in environments where oxygen levels vary. Understanding the physiological traits of D. mangrovi str. SAOS 44 can provide insights into its potential roles in nutrient cycling and decomposition within its natural habitat. The combination of its spore-forming ability and aerobic metabolism positions this bacterium as a potentially important player in the microbial ecology of mangrove systems, where it could contribute to the breakdown of organic matter and the maintenance of soil health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Domibacillus Domibacillus mangrovi Gram-positive rod aerobic 29 mesophilic spore-forming 1714354 MRWQ00000000.1 Bac0006975 Microbacterium sp. No. 7 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. No. 7 1714373 NZ_CP012697.1 Bac0006976 Lysinibacillus telephonicus str. S5H2222 "Lysinibacillus telephonicus strain S5H2222 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolic requirements. This strain thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to mesophilic environments, which may resemble those found in various terrestrial habitats. The spore-forming capability of L. telephonicus S5H2222 contributes to its resilience, allowing it to survive adverse conditions and potentially facilitating its persistence in fluctuating environments.↵↵As an aerobic organism, L. telephonicus S5H2222 relies on oxygen for its metabolic processes, indicating that it may occupy niches where oxygen availability is sufficient. The combination of its Gram-positive nature and spore-forming ability could imply a role in soil ecosystems, where nutrient cycling and the breakdown of organic matter are critical. This strain's traits may also position it as a candidate for biotechnological applications, particularly in processes that require robust organisms capable of withstanding varying environmental stresses.↵↵The ecological insights drawn from the traits of Lysinibacillus telephonicus S5H2222 highlight its potential importance in soil microbiomes, where spore formation and aerobic respiration could play crucial roles in nutrient dynamics and ecosystem functioning." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus telephonicus Gram-positive rod aerobic 37 mesophilic spore-forming 1714840 RXNR00000000.1 Bac0006977 Rothia sp. HMSC071B01 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC071B01 1715007 LTKR00000000.1 Bac0006978 Neisseria sp. HMSC077D05 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. HMSC077D05 1715079 LTJX00000000.1 Bac0006979 Neisseria sp. HMSC064D07 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. HMSC064D07 1715087 LTPQ00000000.1 Bac0006980 Streptococcus sp. HMSC074B11 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC074B11 1715098 LTLD00000000.1 Bac0006981 Streptococcus sp. HMSC063B03 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC063B03 1715107 LTPX00000000.1 Bac0006982 Neisseria sp. HMSC055F11 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. HMSC055F11 1715117 LTJK00000000.1 Bac0006983 Pseudomonas sp. HMSC059F05 "Pseudomonas sp. HMSC059F05 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain has an optimal growth temperature of 25.0°C and demonstrates aerobic metabolism, indicating its reliance on oxygen for energy production. As a heterotroph, Pseudomonas sp. HMSC059F05 utilizes organic compounds as its energy source, which may allow it to thrive in diverse habitats.↵↵The versatility of Pseudomonas sp. HMSC059F05 in occupying multiple environments suggests a notable adaptability to varying ecological niches. This adaptability may be attributed to its metabolic flexibility, enabling it to exploit a range of organic substrates. Such characteristics position Pseudomonas sp. HMSC059F05 as a potential candidate for biotechnological applications, particularly in bioremediation processes, where the ability to degrade various organic pollutants is critical. The ecological role of this strain in nutrient cycling and its interactions within microbial communities warrant further investigation to understand its contributions to ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1715166 LTQU00000000.1 Bac0006984 Shimia thalassica Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia thalassica 1715693 CYTW00000000.1 Bac0006985 Staphylococcus sp. AntiMn-1 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp. AntiMn-1 1715860 NZ_CP012968.1 Bac0006986 Candidatus Nitrospira inopinata Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira inopinata 1715989 NZ_LN885086.1 Bac0006987 Pseudodesulfovibrio indicus str. J2 "Pseudodesulfovibrio indicus strain J2 is a Gram-negative, anaerobic microbe characterized by its curved to spiral shape and an optimal growth temperature of 32.0°C. As a member of the Desulfovibrio genus, this organism is likely involved in sulfur cycling, which is a crucial process in various anaerobic environments. ↵↵The Gram-negative classification suggests that P. indicus str. J2 possesses a distinctive cell wall structure, comprising a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in anaerobic habitats. Its curved or spiral morphology may enhance motility and adaptability in complex environments, potentially allowing it to navigate through microenvironments rich in organic materials or sulfates. ↵↵The optimal growth temperature of 32.0°C indicates that P. indicus str. J2 thrives in moderately warm conditions, possibly reflecting its adaptation to specific ecological niches, such as sediments or microbial mats in marine or estuarine environments. This temperature preference may also inform research into its metabolic capabilities and interactions with other microbial communities.↵↵Understanding the characteristics of Pseudodesulfovibrio indicus str. J2 could provide insights into its role in biogeochemical cycles, especially in sulfur metabolism, which is vital for maintaining ecosystem dynamics in anaerobic systems. Further studies may elucidate its interactions with other microbial species and its contributions to nutrient cycling in its natural habitat." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio indicus Gram-negative curved/spiral anaerobic 32 mesophilic 1716143 NZ_CP014206.1 Bac0006988 Labilibaculum antarcticum str. SPP2 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Labilibaculum Labilibaculum antarcticum 1717717 NZ_AP018042.1 Bac0006989 Pseudomonas sp. ICMP 564 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ICMP 564 1718919 LKBU00000000.1 Bac0006990 Pseudomonas sp. ICMP 8385 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ICMP 8385 1718920 LKBY00000000.1 Bac0006991 Nocardiopsis sp. TSRI0078 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis sp. TSRI0078 1718951 LWLB00000000.1 Bac0006992 Acetilactobacillus jinshanensis Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Acetilactobacillus Acetilactobacillus jinshanensis 1720083 NZ_CP034726.1 Bac0006993 Eisenbergiella massiliensis Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eisenbergiella Eisenbergiella massiliensis 1720294 QVLU00000000.1 Bac0006994 Rhizobium sp. RSm-3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. RSm-3 1720346 MAWZ00000000.1 Bac0006995 Mycobacteroides sp. H001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides sp. H001 1720565 LJYH00000000.1 Bac0006996 Mycobacteroides sp. H054 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides sp. H054 1720567 LJYJ00000000.1 Bac0006997 Mycobacteroides sp. H072 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides sp. H072 1720568 LJYK00000000.1 Bac0006998 Pseudoalteromonas sp. P1-26 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. P1-26 1723759 LKDX00000000.1 Bac0006999 Shewanella sp. P1-14-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. P1-14-1 1723761 LKTL00000000.1 Bac0007000 Candidatus Desulfovibrio trichonymphae "Candidatus Desulfovibrio trichonymphae is a coccus-shaped microbe that is symbiotically associated with protist cells, particularly within the digestive tracts of termites. This unique association highlights its adaptation to a specific niche where it likely plays a role in the degradation of complex organic matter.↵↵As a member of the Desulfovibrio genus, ""Candidatus Desulfovibrio trichonymphae"" is presumed to be involved in anaerobic metabolic processes, although specific metabolic pathways have not been detailed. The coccus morphology suggests a potential for varying arrangements that could influence its interactions within the host environment. Its presence within protist cells indicates a mutualistic relationship, where it may assist in the digestion of cellulose or other substrates, thereby contributing to the overall metabolic efficiency of its host.↵↵The ecological significance of ""Candidatus Desulfovibrio trichonymphae"" lies in its role in the termite gut microbiome, which is crucial for nutrient cycling and energy flow within terrestrial ecosystems. This symbiotic relationship underscores the complexity and interdependence of microbial life and host organisms, reflecting broader ecological processes that facilitate organic matter breakdown and nutrient availability in the environment. Understanding this microbe's specific interactions and functions could provide insights into the dynamics of microbial communities in similar symbiotic systems." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Candidatus Desulfovibrio trichonymphae Coccus 2 protist cell 1725232 NZ_AP017368.1 Bac0007001 Pedobacter sp. PACM 27299 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. PACM 27299 1727164 NZ_CP012996.1 Bac0007002 Streptomyces sp. H-KF8 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. H-KF8 1727216 LWAB00000000.1 Bac0007003 Pseudomonas sp. TAD18 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. TAD18 1729583 LLWI00000000.1 Bac0007004 Planktothrix sp. PCC 11201 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix sp. PCC 11201 1729650 CZCT00000000.2 Bac0007005 Salegentibacter sp. T436 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter sp. T436 1729720 NZ_CP012872.1 Bac0007006 Pseudomonas sp. TTU2014-066ASC Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. TTU2014-066ASC 1729723 LKKJ00000000.1 Bac0007007 Pseudomonas sp. TTU2014-080ASC Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. TTU2014-080ASC 1729724 LKKK00000000.1 Bac0007008 Xanthomonas sp. Mitacek01 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas sp. Mitacek01 1732019 LKIT00000000.1 Bac0007009 Clavibacter phaseoli str. CFBP 8627 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter phaseoli 1734031 QWGV00000000.1 Bac0007010 Desulfosporosinus sp. BRH_c37 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus sp. BRH_c37 1734396 LOEW00000000.1 Bac0007011 Gracilibacter sp. BRH_c7a Bacillati Bacillota Clostridia Eubacteriales Gracilibacteraceae Gracilibacter Gracilibacter sp. BRH_c7a 1734398 LOEZ00000000.1 Bac0007012 Clostridia bacterium BRH_c25 Bacillati Bacillota Clostridia Clostridia bacterium BRH_c25 1734399 LOES00000000.1 Bac0007013 Erythrobacter sp. YT30 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. YT30 1735012 LMAF00000000.1 Bac0007014 Sphingomonas oleivorans str. FW-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas oleivorans 1735121 NWBU00000000.1 Bac0007015 Candidatus Peribacter riflensis Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales Candidatus Peribacter Candidatus Peribacter riflensis 1735162 CP013065.1 Bac0007016 Methanosaeta sp. SDB Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. SDB 1735328 LKUG00000000.1 Bac0007017 Sphingomonas sp. Leaf208 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf208 1735679 LMKH00000000.1 Bac0007018 Sphingomonas sp. Leaf16 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf16 1735681 LMKJ00000000.1 Bac0007019 Pedobacter sp. Leaf216 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. Leaf216 1735684 LMKM00000000.1 Bac0007020 Sphingomonas sp. Leaf20 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf20 1735685 LMKN00000000.1 Bac0007021 Agromyces sp. Leaf222 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces sp. Leaf222 1735688 LMKQ00000000.1 Bac0007022 Sphingomonas sp. Leaf226 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf226 1735691 LMKT00000000.1 Bac0007023 Sphingomonas sp. Leaf25 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf25 1735692 LMKU00000000.1 Bac0007024 Sphingomonas sp. Leaf230 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf230 1735694 LMKW00000000.1 Bac0007025 Rhodococcus sp. Leaf7 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. Leaf7 1736210 LMRI00000000.1 Bac0007026 Sphingomonas sp. Leaf34 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf34 1736216 LMLC00000000.1 Bac0007027 Sphingomonas sp. Leaf42 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf42 1736219 LMLF00000000.1 Bac0007028 Serratia sp. Leaf50 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. Leaf50 1736223 LMLI00000000.1 Bac0007029 Erwinia sp. Leaf53 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia sp. Leaf53 1736225 LMLK00000000.1 Bac0007030 Duganella sp. Leaf61 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. Leaf61 1736227 LMLM00000000.1 Bac0007031 Arthrobacter sp. Leaf69 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Leaf69 1736232 LMLR00000000.1 Bac0007032 Methylobacterium sp. Leaf85 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf85 1736241 LMME00000000.1 Bac0007033 Methylobacterium sp. Leaf93 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf93 1736249 LMMS00000000.1 Bac0007034 Methylobacterium sp. Leaf99 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf99 1736251 LMMU00000000.1 Bac0007035 Methylobacterium sp. Leaf104 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf104 1736254 LMMZ00000000.1 Bac0007036 Methylobacterium sp. Leaf113 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf113 1736259 LMNJ00000000.1 Bac0007037 Methylobacterium sp. Leaf123 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf123 1736264 LMNS00000000.1 Bac0007038 Acinetobacter sp. Leaf130 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. Leaf130 1736269 LMOE00000000.1 Bac0007039 Xanthomonas sp. Leaf131 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas sp. Leaf131 1736270 LMOG00000000.1 Bac0007040 Massilia sp. Leaf139 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. Leaf139 1736272 LMOJ00000000.1 Bac0007041 Frigoribacterium sp. Leaf172 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. Leaf172 1736285 LMPB00000000.1 Bac0007042 Pedobacter sp. Leaf176 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. Leaf176 1736286 LMPD00000000.1 Bac0007043 Burkholderia sp. Leaf177 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Leaf177 1736287 LMPF00000000.1 Bac0007044 Microbacterium sp. Leaf179 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Leaf179 1736288 LMPH00000000.1 Bac0007045 Curtobacterium sp. Leaf183 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. Leaf183 1736291 LMPO00000000.1 Bac0007046 Frigoribacterium sp. Leaf186 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. Leaf186 1736293 LMPQ00000000.1 Bac0007047 Dyadobacter sp. Leaf189 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter sp. Leaf189 1736295 LMPS00000000.1 Bac0007048 Pedobacter sp. Leaf194 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. Leaf194 1736297 LMPU00000000.1 Bac0007049 Sphingomonas sp. Leaf198 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf198 1736299 LMPX00000000.1 Bac0007050 Sphingomonas sp. Leaf231 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf231 1736301 LMLS00000000.1 Bac0007051 Sphingomonas sp. Leaf242 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf242 1736304 LMLW00000000.1 Bac0007052 Agreia sp. Leaf244 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agreia Agreia sp. Leaf244 1736305 LMLX00000000.1 Bac0007053 Rhodococcus sp. Leaf247 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. Leaf247 1736307 LMRP00000000.1 Bac0007054 Frigoribacterium sp. Leaf254 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. Leaf254 1736308 LMMF00000000.1 Bac0007055 Sphingomonas sp. Leaf257 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf257 1736309 LMMH00000000.1 Bac0007056 Curtobacterium sp. Leaf261 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. Leaf261 1736311 LMMJ00000000.1 Bac0007057 Pseudorhodoferax sp. Leaf274 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Pseudorhodoferax Pseudorhodoferax sp. Leaf274 1736318 LMNA00000000.1 Bac0007058 Rhodococcus sp. Leaf278 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. Leaf278 1736319 LMRR00000000.1 Bac0007059 Brevundimonas sp. Leaf280 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. Leaf280 1736320 LMNC00000000.1 Bac0007060 Agreia sp. Leaf283 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agreia Agreia sp. Leaf283 1736321 LMNF00000000.1 Bac0007061 Microbacterium sp. Leaf288 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Leaf288 1736323 LMNI00000000.1 Bac0007062 Rhizobium sp. Leaf311 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Leaf311 1736332 LMNZ00000000.1 Bac0007063 Plantibacter sp. Leaf314 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter sp. Leaf314 1736333 LMOB00000000.1 Bac0007064 Cellulomonas sp. Leaf334 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. Leaf334 1736339 LMOO00000000.1 Bac0007065 Arthrobacter sp. Leaf337 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Leaf337 1736342 LMPC00000000.1 Bac0007066 Sphingomonas sp. Leaf339 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf339 1736343 LMRS00000000.1 Bac0007067 Sphingomonas sp. Leaf343 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf343 1736345 LMPG00000000.1 Bac0007068 Allobosea sp. Leaf344 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. Leaf344 1736346 LMRT00000000.1 Bac0007069 Williamsia sp. Leaf354 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia sp. Leaf354 1736349 LMPL00000000.1 Bac0007070 Rhizobium sp. Leaf383 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Leaf383 1736357 LMQD00000000.1 Bac0007071 Chryseobacterium sp. Leaf394 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. Leaf394 1736361 LMQH00000000.1 Bac0007072 Bradyrhizobium sp. Leaf396 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Leaf396 1736363 LMQJ00000000.1 Bac0007073 Ramlibacter sp. Leaf400 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Ramlibacter Ramlibacter sp. Leaf400 1736365 LMQL00000000.1 Bac0007074 Bacillus sp. Leaf406 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Leaf406 1736368 LMRU00000000.1 Bac0007075 Frigoribacterium sp. Leaf415 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. Leaf415 1736372 LMQR00000000.1 Bac0007076 Rhizobium sp. Leaf453 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Leaf453 1736380 LMRG00000000.1 Bac0007077 Methylobacterium sp. Leaf456 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf456 1736382 LMQV00000000.1 Bac0007078 Paenibacillus sp. Soil522 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Soil522 1736388 LMRV00000000.1 Bac0007079 Bacillus sp. Soil531 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Soil531 1736389 LMSY00000000.1 Bac0007080 Knoellia sp. Soil729 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Knoellia Knoellia sp. Soil729 1736394 LMSA00000000.1 Bac0007081 Phycicoccus sp. Soil748 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Phycicoccus Phycicoccus sp. Soil748 1736397 LMSC00000000.1 Bac0007082 Arthrobacter sp. Soil761 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Soil761 1736400 LMSF00000000.1 Bac0007083 Arthrobacter sp. Soil764 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Soil764 1736403 LMSI00000000.1 Bac0007084 Paenibacillus sp. Soil766 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Soil766 1736404 LMSJ00000000.1 Bac0007085 Bacillus sp. Soil768D1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Soil768D1 1736405 LMTA00000000.1 Bac0007086 Nocardioides sp. Soil774 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Soil774 1736408 LMSM00000000.1 Bac0007087 Nocardioides sp. Soil777 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Soil777 1736409 LMSN00000000.1 Bac0007088 Arthrobacter sp. Soil782 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Soil782 1736410 LMSO00000000.1 Bac0007089 Nocardioides sp. Soil796 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Soil796 1736412 LMSQ00000000.1 Bac0007090 Phycicoccus sp. Soil802 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Phycicoccus Phycicoccus sp. Soil802 1736414 LMSS00000000.1 Bac0007091 Nocardioides sp. Soil805 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Soil805 1736416 LMSU00000000.1 Bac0007092 Terrabacter sp. Soil810 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Terrabacter Terrabacter sp. Soil810 1736418 LMSW00000000.1 Bac0007093 Terrabacter sp. Soil811 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Terrabacter Terrabacter sp. Soil811 1736419 LMSX00000000.1 Bac0007094 Devosia sp. Root105 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. Root105 1736423 LMCR00000000.1 Bac0007095 Leifsonia sp. Root112D2 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Root112D2 1736426 LMCU00000000.1 Bac0007096 Rhizobium sp. Root1212 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root1212 1736429 LMDA00000000.1 Bac0007097 Pelomonas sp. Root1217 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Pelomonas sp. Root1217 1736430 LMDC00000000.1 Bac0007098 Nocardioides sp. Root122 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Root122 1736431 LMDE00000000.1 Bac0007099 Phenylobacterium sp. Root1277 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium sp. Root1277 1736442 LMDZ00000000.1 Bac0007100 Brevundimonas sp. Root1279 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. Root1279 1736443 LMEB00000000.1 Bac0007101 Phenylobacterium sp. Root1290 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium sp. Root1290 1736445 LMEE00000000.1 Bac0007102 Bacillus sp. Root131 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Root131 1736451 LMJQ00000000.1 Bac0007103 Streptomyces sp. Root1310 "Streptomyces sp. Root1310 is a Gram-negative, rod-shaped bacterium that exhibits a solitary cell arrangement and is classified as a heterotrophic aerobe. This microbial strain thrives in various habitats, suggesting a broad adaptability to different environmental conditions. Its ability to utilize organic compounds for energy underscores its role in nutrient cycling within its ecosystem.↵↵The aerobic nature of Streptomyces sp. Root1310 indicates its reliance on oxygen for metabolic processes, which aligns with its heterotrophic lifestyle. Such traits are characteristic of many soil-dwelling actinobacteria, known for their ecological importance in decomposing organic matter and contributing to soil health. The versatility in habitat suggests that Streptomyces sp. Root1310 may play significant roles in diverse ecological niches, potentially influencing microbial community dynamics and nutrient availability.↵↵Understanding the metabolic capabilities and ecological roles of Streptomyces sp. Root1310 could provide insights into its potential applications in agriculture or bioremediation, highlighting the importance of such microorganisms in maintaining ecosystem balance and functionality." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Root1310 Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 1736452 NZ_LMEQ01000012.1 Bac0007104 Nocardioides sp. Root140 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Root140 1736460 LMFI00000000.1 Bac0007105 Brevundimonas sp. Root1423 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. Root1423 1736462 LMFL00000000.1 Bac0007106 Microbacterium sp. Root1433D1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Root1433D1 1736463 LMFN00000000.1 Bac0007107 Sphingopyxis sp. Root1497 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. Root1497 1736474 LMGF00000000.1 Bac0007108 Mesorhizobium sp. Root157 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Root157 1736477 LMGJ00000000.1 Bac0007109 Achromobacter sp. Root170 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter sp. Root170 1736480 LMHN00000000.1 Bac0007110 Mesorhizobium sp. Root172 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Root172 1736481 LMHP00000000.1 Bac0007111 Microbacterium sp. Root180 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Root180 1736483 LMHS00000000.1 Bac0007112 Kitasatospora sp. Root187 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. Root187 1736486 LMHX00000000.1 Bac0007113 Noviherbaspirillum sp. Root189 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Noviherbaspirillum Noviherbaspirillum sp. Root189 1736487 LMHZ00000000.1 Bac0007114 Duganella sp. Root198D2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. Root198D2 1736489 LMIC00000000.1 Bac0007115 Hydrogenophaga sp. Root209 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. Root209 1736490 LMIE00000000.1 Bac0007116 Sphingopyxis sp. Root214 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. Root214 1736491 LMIG00000000.1 Bac0007117 Acidovorax sp. Root217 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. Root217 1736492 LMIH00000000.1 Bac0007118 Acidovorax sp. Root219 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. Root219 1736493 LMIJ00000000.1 Bac0007119 Sphingomonas sp. Root241 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Root241 1736501 LMIV00000000.1 Bac0007120 Streptomyces sp. Root264 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Root264 1736503 LMIZ00000000.1 Bac0007121 Mycobacterium sp. Root265 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. Root265 1736504 LMJA00000000.1 Bac0007122 Variovorax sp. Root318D1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. Root318D1 1736513 LMCQ00000000.1 Bac0007123 Microbacterium sp. Root322 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Root322 1736514 LMCS00000000.1 Bac0007124 Pseudomonas sp. Root329 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Root329 1736515 LMCV00000000.1 Bac0007125 Massilia sp. Root351 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. Root351 1736522 LMDJ00000000.1 Bac0007126 Streptomyces sp. Root369 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Root369 1736523 LMDL00000000.1 Bac0007127 Leifsonia sp. Root4 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Root4 1736525 LMDN00000000.1 Bac0007128 Pseudomonas sp. Root401 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Root401 1736526 LMDO00000000.1 Bac0007129 Pelomonas sp. Root405 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Pelomonas sp. Root405 1736529 LMDU00000000.1 Bac0007130 Variovorax sp. Root411 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. Root411 1736530 LMDW00000000.1 Bac0007131 Massilia sp. Root418 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. Root418 1736532 LMEC00000000.1 Bac0007132 Flavobacterium sp. Root420 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Root420 1736533 LMEF00000000.1 Bac0007133 Streptomyces sp. Root431 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Root431 1736535 LMEI00000000.1 Bac0007134 Variovorax sp. Root434 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. Root434 1736536 LMEK00000000.1 Bac0007135 Devosia sp. Root436 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. Root436 1736537 LMEM00000000.1 Bac0007136 Aeromicrobium sp. Root472D3 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp. Root472D3 1736540 LMET00000000.1 Bac0007137 Aeromicrobium sp. Root495 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp. Root495 1736550 LMFJ00000000.1 Bac0007138 Mesorhizobium sp. Root552 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Root552 1736555 LMFV00000000.1 Bac0007139 Mesorhizobium sp. Root554 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Root554 1736557 LMGA00000000.1 Bac0007140 Lysobacter sp. Root604 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. Root604 1736568 LMGS00000000.1 Bac0007141 Nocardioides sp. Root614 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Root614 1736571 LMGV00000000.1 Bac0007142 Devosia sp. Root635 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. Root635 1736575 LMGZ00000000.1 Bac0007143 Pseudoxanthomonas sp. Root65 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas sp. Root65 1736576 LMHA00000000.1 Bac0007144 Pelomonas sp. Root662 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Pelomonas sp. Root662 1736580 LMHE00000000.1 Bac0007145 Devosia sp. Root685 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. Root685 1736587 LMHK00000000.1 Bac0007146 Lysobacter sp. Root690 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. Root690 1736588 LMHM00000000.1 Bac0007147 Phenylobacterium sp. Root700 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium sp. Root700 1736591 LMHT00000000.1 Bac0007148 Rhizobium sp. Root708 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root708 1736592 LMHV00000000.1 Bac0007149 Sphingomonas sp. Root710 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Root710 1736594 LMIB00000000.1 Bac0007150 Sphingomonas sp. Root720 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Root720 1736595 LMID00000000.1 Bac0007151 Agromyces sp. Root81 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces sp. Root81 1736601 LMIR00000000.1 Bac0007152 Terrabacter sp. Root85 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Terrabacter Terrabacter sp. Root85 1736603 LMIW00000000.1 Bac0007153 Pseudomonas sp. Root9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Root9 1736604 LMIY00000000.1 Bac0007154 Oerskovia sp. Root918 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Oerskovia Oerskovia sp. Root918 1736607 LMJG00000000.1 Bac0007155 Cellulomonas sp. Root930 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. Root930 1736609 LMJI00000000.1 Bac0007156 Citrobacter sp. 50677481 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. 50677481 1736699 LNHZ00000000.1 Bac0007157 Pseudohalioglobus lutimaris str. HF004 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Pseudohalioglobus Pseudohalioglobus lutimaris 1737061 PKUS00000000.1 Bac0007158 Brumimicrobium aurantiacum str. N62 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Brumimicrobium Brumimicrobium aurantiacum 1737063 QURB00000000.1 Bac0007159 Streptomyces sp. AVP053U2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AVP053U2 1737066 LMTQ00000000.2 Bac0007160 Streptomyces sp. DSM 15324 str. DSM 101724 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DSM 15324 1739111 LMXA00000000.1 Bac0007161 Fusobacterium sp. HMSC073F01 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. HMSC073F01 1739251 LTHT00000000.1 Bac0007162 Rothia sp. HMSC075F09 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC075F09 1739253 LTHR00000000.1 Bac0007163 Rothia sp. HMSC067H10 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC067H10 1739260 LTYQ00000000.1 Bac0007164 Streptococcus sp. HMSC076C08 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC076C08 1739270 LTHE00000000.1 Bac0007165 Streptococcus sp. HMSC056C01 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC056C01 1739299 LTGH00000000.1 Bac0007166 Kocuria sp. HMSC066H03 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. HMSC066H03 1739337 LTEY00000000.1 Bac0007167 Rothia sp. HMSC065B04 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC065B04 1739349 LTEN00000000.1 Bac0007168 Micrococcus sp. HMSC067E09 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus sp. HMSC067E09 1739367 LTYF00000000.1 Bac0007169 Corynebacterium sp. HMSC078H07 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC078H07 1739379 LTXU00000000.1 Bac0007170 Streptococcus sp. HMSC072D03 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC072D03 1739381 LWQK00000000.1 Bac0007171 Neisseria sp. HMSC067G11 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. HMSC067G11 1739384 LTXQ00000000.1 Bac0007172 Rothia sp. HMSC066G02 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC066G02 1739398 LTXD00000000.1 Bac0007173 Rothia sp. HMSC036D11 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC036D11 1739462 LTVG00000000.1 Bac0007174 Corynebacterium sp. HMSC059E07 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC059E07 1739471 LTUY00000000.1 Bac0007175 Rothia sp. HMSC076D04 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. HMSC076D04 1739484 LTUL00000000.1 Bac0007176 Streptococcus sp. HMSC067H01 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC067H01 1739491 LTUF00000000.1 Bac0007177 Corynebacterium sp. HMSC071B10 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC071B10 1739494 LTUC00000000.1 Bac0007178 Prevotella sp. HMSC069G02 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. HMSC069G02 1739496 LTUA00000000.1 Bac0007179 Fusobacterium sp. HMSC064B11 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. HMSC064B11 1739543 LTSL00000000.1 Bac0007180 Pedobacter sp. Hv1 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. Hv1 1740090 LLWP00000000.1 Bac0007181 Oceanobacillus sp. E9 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus sp. E9 1742575 LSNA00000000.1 Bac0007182 Candidatus Nitrospira nitrosa Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira nitrosa 1742972 CZQA00000000.1 Bac0007183 Candidatus Nitrospira nitrificans Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira nitrificans 1742973 CZPZ00000000.1 Bac0007184 Arthrobacter sp. EpRS66 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. EpRS66 1743140 LNUU00000000.1 Bac0007185 Arthrobacter sp. EpRS71 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. EpRS71 1743141 LNUV00000000.1 Bac0007186 Pseudobacillus wudalianchiensis str. FJAT-27215 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pseudobacillus Pseudobacillus wudalianchiensis 1743143 MAYT00000000.1 Bac0007187 Bacillus sp. FJAT-27225 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-27225 1743144 MAYU00000000.1 Bac0007188 Bacillus sp. FJAT-27986 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-27986 1743146 MAYV00000000.1 Bac0007189 Polynucleobacter wuianus "Polynucleobacter wuianus is a rod-shaped bacterium that exhibits aerobic metabolism, functioning primarily as an organotroph and chemotroph. This microbe is characterized by its ability to utilize organic compounds as its energy source in the presence of oxygen, indicating its adaptation to aerobic environments where organic substrates are available. ↵↵The rod shape of Polynucleobacter wuianus may enhance its surface area-to-volume ratio, potentially facilitating efficient nutrient uptake and metabolic processes in its habitat. As an aerobic organism, its growth and survival are closely linked to the availability of oxygen, which is essential for its energy production pathways. ↵↵Polynucleobacter wuianus represents a fascinating example of microbial adaptation, thriving in environments that support aerobic life and organic material availability. Further studies on its ecological role could provide insights into its interactions within microbial communities and its potential contributions to biogeochemical cycles in aquatic ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter wuianus rod non-motile aerobic organotroph; chemotroph 1743168 NZ_CP015922.1 Bac0007190 Mycobacterium sp. IEC1808 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. IEC1808 1743230 LQPV00000000.1 Bac0007191 Frankia sp. CcI49 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. CcI49 1745382 MOWP00000000.1 Bac0007192 Cylindrospermopsis sp. CR12 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Cylindrospermopsis Cylindrospermopsis sp. CR12 1747196 LMVE00000000.1 Bac0007193 Aeromonas sp. ARM81 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. ARM81 1747384 NZ_CM010404.1 Bac0007194 Pseudomonas sp. EpS/L25 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. EpS/L25 1749078 LNUP00000000.1 Bac0007195 Marinobacter sp. LQ44 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. LQ44 1749259 NZ_CP014754.1 Bac0007196 Streptomyces sp. 4F Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 4F 1751294 NACY00000000.1 Bac0007197 Solirubrum puertoriconensis Pseudomonadati Bacteroidota Cytophagia Cytophagales Solirubrum Solirubrum puertoriconensis 1751427 LNAL00000000.1 Bac0007198 Fischerella sp. NIES-3754 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella sp. NIES-3754 1752063 NZ_AP017307.1 Bac0007199 Ensifer alkalisoli str. YIC4027 "Ensifer alkalisoli strain YIC4027 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic activity and does not form spores. This organism is characterized by its ability to thrive in alkaline environments, which may suggest adaptations that allow it to maintain cellular function in conditions that would be challenging for many other microorganisms. ↵↵As a member of the genus Ensifer, this strain is likely to be involved in various biochemical processes, including nitrogen fixation, although specific details on its metabolic pathways are not provided. The aerobic nature of E. alkalisoli str. YIC4027 indicates that it requires oxygen for growth, which may influence its ecological niche, potentially associating it with environments rich in oxygen such as soil or rhizospheres of plants.↵↵Overall, the traits of Ensifer alkalisoli str. YIC4027 suggest a role in nutrient cycling in alkaline ecosystems, where its metabolic activities could contribute to soil fertility and plant health. Further studies on this strain could provide insights into its ecological interactions and potential applications in biotechnology, particularly in alkaline soil management or bioremediation efforts." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium alkalisoli Gram-negative rod aerobic non-spore-forming 1752398 LYBW00000000.1 Bac0007200 Agrobacterium salinitolerans Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. YIC5082 1752526 POYI00000000.1 Bac0007201 Pseudomonas sp. DY-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. DY-1 1755504 NZ_CP032616.1 Bac0007202 Paraphotobacterium marinum str. NSCS20N07D Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Paraphotobacterium Paraphotobacterium marinum 1755811 NZ_CP022356.1 Bac0007203 Aeromonas sp. ASNIH5 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. ASNIH5 1758179 NZ_CP026122.1 Bac0007204 Acinetobacter sp. ACNIH2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ACNIH2 1758189 NZ_CP026413.1 Bac0007205 Bacillus sp. V59.32b str. V59.32a Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. V59.32b 1758642 QVTC00000000.1 Bac0007206 Serinicoccus hydrothermalis Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Serinicoccus Serinicoccus hydrothermalis 1758689 NZ_CP014989.1 Bac0007207 Candidatus Viadribacter manganicus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Candidatus Viadribacter Candidatus Viadribacter manganicus 1759059 NZ_CP013244.1 Bac0007208 Sphingopyxis sp. H050 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. H050 1759072 LNRZ00000000.1 Bac0007209 Sphingopyxis sp. HIX Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. HIX 1759074 LNSB00000000.1 Bac0007210 Sphingopyxis sp. H071 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. H071 1759078 LNSF00000000.1 Bac0007211 Streptococcus sp. A12 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. A12 1759399 NZ_CP013651.1 Bac0007212 Bacillus sp. JH7 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. JH7 1759556 LPUS00000000.1 Bac0007213 Sporosarcina sp. HYO08 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. HYO08 1759557 LPUT00000000.1 Bac0007214 Paraburkholderia caffeinilytica Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caffeinilytica 1761016 NZ_CP031468.1 Bac0007215 Arthrobacter sp. ok362 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. ok362 1761745 FNGC00000000.1 Bac0007216 Arthrobacter sp. ov118 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. ov118 1761747 FPAY00000000.1 Bac0007217 Arthrobacter sp. yr096 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. yr096 1761750 FNYI00000000.1 Bac0007218 Bacillus sp. bc15 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. bc15 1761758 FRBJ00000000.1 Bac0007219 Bacillus sp. es.036 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. es.036 1761764 PDIZ00000000.1 Bac0007220 Priestia flexa "Priestia flexa is a Gram-positive, rod-shaped bacterium distinguished by its aerobic metabolic requirements. As an aerobe, this microbe thrives in environments where oxygen is present, utilizing it for respiration and energy production. The rod shape of Priestia flexa suggests potential adaptability in various ecological niches, allowing it to efficiently colonize diverse substrates.↵↵The Gram-positive nature of Priestia flexa indicates the presence of a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria. This structural feature not only contributes to the bacterium's integrity and resistance to certain environmental stresses but may also influence its interactions with other microorganisms and its ability to form biofilms.↵↵Given its aerobic lifestyle, Priestia flexa may play a significant role in carbon cycling within its habitat, potentially participating in the degradation of organic matter and influencing the microbial community structure. This suggests that Priestia flexa could be integral to nutrient recycling processes in its ecosystem, highlighting its importance in maintaining ecological balance. Further studies may elucidate its specific metabolic pathways and interactions with other microorganisms, providing deeper insights into its ecological role." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia flexa Positive Rod Aerobe 1761769 FMBD00000000.1 Bac0007221 Bradyrhizobium sp. cf659 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. cf659 1761771 FOQJ00000000.1 Bac0007222 Butyrivibrio sp. ob235 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. ob235 1761780 FOBE00000000.1 Bac0007223 Clostridium sp. DSM 8431 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. DSM 8431 rumen 1761781 FPBY00000000.1 Bac0007224 Flavobacterium sp. ov086 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. ov086 1761785 FZNL00000000.1 Bac0007225 Lysobacter sp. cf310 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. cf310 1761790 FOSS00000000.1 Bac0007226 Marinobacter sp. es.042 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. es.042 1761794 NZ_LT897781.1 Bac0007227 Methylobacterium sp. yr596 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. yr596 1761800 FONO00000000.1 Bac0007228 Microbacterium sp. cf046 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. cf046 1761803 FOZJ00000000.1 Bac0007229 Paenibacillus sp. 453mf Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 453mf 1761874 FPAC00000000.1 Bac0007230 Paenibacillus sp. cl141a Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. cl141a 1761877 FNZO00000000.1 Bac0007231 Pedobacter sp. ok626 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. ok626 1761882 FNEX00000000.1 Bac0007232 Prevotella sp. ne3005 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. ne3005 1761887 FOCK00000000.1 Bac0007233 Pseudoalteromonas sp. DSM 26666 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. DSM 26666 1761892 FPAR00000000.1 Bac0007234 Pseudomonas sp. bs2935 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. bs2935 1761895 NZ_LT629744.1 Bac0007235 Rhizobium sp. 9140 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. 9140 1761900 FJUR00000000.1 Bac0007236 Stenotrophomonas sp. 92mfcol6.1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas indicatrix 1761901 FWEU00000000.1 Bac0007237 Thermoactinomyces sp. DSM 45891 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Thermoactinomyces Thermoactinomyces sp. DSM 45891 aerobic 1761907 FPJZ00000000.1 Bac0007238 Vibrio sp. MEBiC08052 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. MEBiC08052 1761910 LQIY00000000.1 Bac0007239 Sphingobium sp. MP9-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. MP9-4 1761936 LUFI00000000.1 Bac0007240 cyanobacterium endosymbiont of Rhopalodia gibberula Bacillati Cyanobacteriota cyanobacterium endosymbiont of Rhopalodia gibberula 1763363 NZ_AP018341.1 Bac0007241 Lachnotalea glycerini str. DSM 28816 "Lachnotalea glycerini str. DSM 28816 is a Gram-positive, rod-shaped bacterium that exhibits strict anaerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 29.0 °C, which suggests a preference for moderately warm environments. ↵↵The Gram-positive nature of Lachnotalea glycerini str. DSM 28816 indicates a thick peptidoglycan layer in its cell wall, a characteristic that may confer certain advantages in terms of structural integrity and resistance to environmental stresses associated with anaerobic conditions. The absence of sporulation suggests that this microbe may rely on other survival strategies under unfavorable conditions, such as the formation of biofilms or the utilization of alternative metabolic pathways.↵↵The specific growth conditions and metabolic characteristics of Lachnotalea glycerini str. DSM 28816 position it within a niche that may be significant for the degradation of glycerol and related compounds in anaerobic environments. Such traits could indicate a role in biogeochemical cycles, particularly in the breakdown of organic materials in environments like sediments or the gastrointestinal tracts of animals, where anaerobic conditions prevail. Understanding the metabolic capabilities of this strain could provide insights into its potential applications in bioremediation or biotechnology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnotalea Lachnotalea glycerini Gram-positive rod non-motile anaerobic 29 mesophilic non-spore-forming 1763509 QICS00000000.1 Bac0007242 Cochleicola gelatinilyticus Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cochleicola Cochleicola gelatinilyticus 1763537 LRXL00000000.1 Bac0007243 Rheinheimera sp. F8 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sp. F8 1763998 NZ_CP013656.1 Bac0007244 Rhizobium sp. R693 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. R693 1764276 LOKY00000000.1 Bac0007245 Acidibacillus ferrooxidans Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Ferroacidibacillus Ferroacidibacillus organovorans 1765683 LVKL00000000.1 Bac0007246 Acidibacillus sulfuroxidans Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Sulfoacidibacillus Sulfoacidibacillus thermotolerans 1765684 MPDK00000000.1 Bac0007247 Streptococcus penaeicida str. CAIM 1838 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus penaeicida 1765960 LOCM00000000.1 Bac0007248 Idiomarina sp. H105 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina sp. H105 1766622 LOPZ00000000.1 Bac0007249 Sphingobacterium cellulitidis "Sphingobacterium cellulitidis is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0 °C. This organism is part of the Sphingobacterium genus, which is known for its diverse metabolic capabilities and role in the degradation of complex organic materials. The Gram-negative nature of S. cellulitidis indicates that it possesses a characteristic double membrane structure, which may contribute to its resilience in various environmental conditions.↵↵The preference for aerobic conditions suggests that S. cellulitidis utilizes oxygen for its metabolic processes, potentially influencing its ecological roles in environments rich in organic matter. The optimal growth temperature of 32.0 °C aligns with the typical temperatures found in soil and decaying plant material, further supporting its ecological niche as a decomposer. Given its metabolic versatility, S. cellulitidis may play a significant role in nutrient cycling, particularly in the breakdown of cellulose and other polysaccharides, which are prevalent in plant biomass.↵↵Understanding the characteristics of Sphingobacterium cellulitidis is essential for appreciating its ecological contributions, particularly in soil ecosystems where it may assist in the degradation of organic matter, thereby facilitating nutrient availability for other organisms. This highlights the importance of such microbial species in maintaining ecological balance and promoting soil health." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium cellulitidis Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 1768011 NOUX00000000.1 Bac0007250 Paucibacter sp. KCTC 42545 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Paucibacter sp. KCTC 42545 1768242 NZ_CP013692.1 Bac0007251 Candidatus Methanomethylophilus sp. 1R26 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Candidatus Methanomethylophilus sp. 1R26 1769296 LOPS00000000.1 Bac0007252 Mycobacterium sp. IS-1496 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. IS-1496 1772284 LQIU00000000.1 Bac0007253 Mycobacterium sp. IS-1742 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. IS-1742 1772285 LQIV00000000.1 Bac0007254 Mycobacterium sp. IS-1590 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. IS-1590 1772286 LQIW00000000.1 Bac0007255 Polaribacter vadi str. LPB0003 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter vadi aerobic 25 mesophilic non-spore-forming 1774273 LSFM00000000.1 Bac0007256 Alteromonas mediterranea DE "Alteromonas mediterranea DE is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. As a heterotrophic organism, it obtains its energy through the consumption of organic compounds, which is characteristic of many marine bacteria. This organism is strictly aerobic, indicating that it requires oxygen for its metabolic processes. ↵↵The ecological role of Alteromonas mediterranea DE may be significant in nutrient cycling within its aquatic habitat, as its heterotrophic nature enables it to contribute to the degradation of organic matter, thereby influencing the availability of nutrients for other microorganisms and higher trophic levels. Its presence in marine ecosystems may also reflect its adaptation to specific environmental conditions, such as varying levels of organic material and oxygen availability, which could impact community dynamics in these habitats. Understanding the metabolic capabilities and ecological contributions of Alteromonas mediterranea DE could provide valuable insights into microbial processes in marine ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Aquatic Free living 1774373 NC_011138.3 Bac0007257 Methyloceanibacter methanicus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Methyloceanibacter Methyloceanibacter methanicus 1774968 LPWG00000000.1 Bac0007258 delta proteobacterium ML8_D Deltaproteobacteria delta proteobacterium ML8_D 1775672 LQBF00000000.1 Bac0007259 Hadesarchaea archaeon DG-33 Methanobacteriati Candidatus Hadarchaeota Candidatus Hadarchaeia Hadesarchaea archaeon DG-33 1775754 LQHI00000000.1 Bac0007260 Hadesarchaea archaeon DG-33-1 Methanobacteriati Candidatus Hadarchaeota Candidatus Hadarchaeia Hadesarchaea archaeon DG-33-1 1775755 LQHJ00000000.1 Bac0007261 Methylobacterium indicum str. NS229 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium indicum 1775910 LDRM00000000.1 Bac0007262 Clostridium sp. C105KSO13 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. C105KSO13 1776045 FBWL00000000.1 Bac0007263 Megasphaera sp. DISK 18 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera sp. DISK 18 1776081 LUGJ00000000.1 Bac0007264 Microbacterium sp. T32 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. T32 1776083 LQQP00000000.1 Bac0007265 Hadesarchaea archaeon YNP_N21 Methanobacteriati Candidatus Hadarchaeota Candidatus Hadarchaeia Hadesarchaea archaeon YNP_N21 1776333 LQMP00000000.1 Bac0007266 Candidatus Hadarchaeum yellowstonense Methanobacteriati Candidatus Hadarchaeota Candidatus Hadarchaeia Candidatus Hadarchaeales Candidatus Hadarchaeaceae Candidatus Hadarchaeum Candidatus Hadarchaeum yellowstonense 1776334 LQMQ00000000.1 Bac0007267 Emergencia timonensis Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Emergencia Emergencia timonensis 1776384 QRMS00000000.1 Bac0007268 Massiliimicrobium timonense Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massiliimicrobium Massiliimicrobium timonense No 1 Chemoheterotroph Nonsporulating 1776392 NFLJ00000000.1 Bac0007269 Lactococcus sp. DD01 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus sp. DD01 microaerophile 1776443 LQOE00000000.1 Bac0007270 Streptococcus sp. DD04 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. DD04 1776578 LQOH00000000.1 Bac0007271 Acinetobacter proteolyticus str. 2P01AA Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter proteolyticus 1776741 PISJ00000000.1 Bac0007272 Acinetobacter proteolyticus Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter proteolyticus 1776741 APOI00000000.1 Bac0007273 Acinetobacter vivianii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter vivianii 1776742 APRW00000000.1 Bac0007274 Chromobacterium sp. F49 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium sp. F49 1777131 LQNP00000000.1 Bac0007275 Caballeronia peredens Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia peredens aerobic 1777132 FCOH00000000.2 Bac0007276 Caballeronia turbans Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia turbans aerobic 1777134 FCOD00000000.2 Bac0007277 Caballeronia arvi Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia arvi aerobic 1777135 FCOM00000000.2 Bac0007278 Caballeronia fortuita Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia fortuita aerobic 1777138 FCNX00000000.2 Bac0007279 Caballeronia hypogeia Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia hypogeia aerobic 1777140 FCOA00000000.2 Bac0007280 Caballeronia pedi Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia pedi aerobic 1777141 FCOE00000000.2 Bac0007281 Caballeronia arationis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia arationis 1777142 FCOG00000000.2 Bac0007282 Caballeronia glebae Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia glebae aerobic 1777143 FCOJ00000000.2 Bac0007283 Caballeronia ptereochthonis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia ptereochthonis aerobic 1777144 FCOB00000000.2 Bac0007284 Pseudoalteromonas sp. CO133X Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. CO133X 1777237 SGPE00000000.1 Bac0007285 Pseudoalteromonas sp. CO342X Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. CO342X 1777270 SGPH00000000.1 Bac0007286 Mesorhizobium jarvisii str. LMG 28313 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium jarvisii 1777867 QZXA00000000.1 Bac0007287 Streptococcus sp. DD11 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. DD11 1777879 LQRF00000000.1 Bac0007288 Dickeya fangzhongdai str. DSM 101947 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya fangzhongdai 1778540 NZ_CP025004.1 Bac0007289 Alloyangia mangrovi Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Alloyangia Alloyangia mangrovi 1779329 NTHN00000000.2 Bac0007290 Candidatus Bathyarchaeota archaeon B23 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon B23 1779367 LUCA00000000.1 Bac0007291 Candidatus Hecatellales archaeon B24 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia Candidatus Hecatellales Candidatus Hecatellales archaeon B24 1779369 LUCC00000000.1 Bac0007292 Candidatus Bathyarchaeota archaeon B26-1 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon B26-1 1779370 LUCD00000000.1 Bac0007293 Candidatus Bathyarchaeota archaeon B26-2 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon B26-2 1779371 LUCE00000000.1 Bac0007294 Donghicola sp. KarMa Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Donghicola Donghicola eburneus 1779855 FMJB00000000.1 Bac0007295 Paenibacillus sp. DMB5 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. DMB5 1780103 LRAC00000000.1 Bac0007296 Clostridiales bacterium CHKCI001 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium CHKCI001 1780378 FCNS00000000.1 Bac0007297 Clostridiales bacterium CHKCI006 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium CHKCI006 1780379 FCNA00000000.1 Bac0007298 Eubacteriaceae bacterium CHKCI004 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacteriaceae bacterium CHKCI004 1780380 FCNR00000000.1 Bac0007299 Duganella sp. HH101 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. HH101 1781066 LRON00000000.1 Bac0007300 Desertifilum tharense IPPAS B-1220 Bacillati Cyanobacteriota Cyanophyceae Desertifilales Desertifilaceae Desertifilum Desertifilum tharense 1781255 MJGC00000000.1 Bac0007301 Arsenicitalea aurantiaca str. 42-50 "Arsenicitalea aurantiaca str. 42-50 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 37.0°C. This organism is non-spore-forming, which indicates that it relies on other mechanisms for survival and adaptation in its environment. ↵↵The Gram-negative nature of A. aurantiaca str. 42-50 suggests that it possesses a thin peptidoglycan layer and an outer membrane, characteristics that could influence its interactions with its surroundings, including potential responses to antimicrobial agents. The rod shape is a common morphology among many bacteria, contributing to various ecological roles and adaptations, particularly in nutrient uptake and motility.↵↵Given its aerobic requirement, A. aurantiaca str. 42-50 likely engages in metabolic pathways that utilize oxygen as a terminal electron acceptor, which could be advantageous in oxygen-rich environments. This trait may allow the organism to inhabit specific niches where oxygen is available, potentially influencing its ecological relationships and roles in biogeochemical cycles.↵↵In summary, A. aurantiaca str. 42-50’s unique combination of traits, particularly its aerobic metabolism and Gram-negative structure, positions it as a significant player in environments where oxygen is present, potentially contributing to the degradation of organic compounds or the cycling of elements such as arsenic, given its genus association. Further research could elucidate its specific ecological impacts and interactions within microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Arsenicitalea Arsenicitalea aurantiaca Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 1783274 RZNJ00000000.1 Bac0007302 Halomonadaceae bacterium T82-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonadaceae bacterium T82-2 1783518 LSBP00000000.1 Bac0007303 Aurantiacibacter xanthus Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter xanthus 1784712 QXFM00000000.1 Bac0007304 Flavobacterium arcticum str. SM1502T "Flavobacterium arcticum str. SM1502T is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments at an optimal temperature of 25.0°C. This species is part of the Flavobacteriaceae family, which is characterized by its diverse metabolic capabilities and ecological versatility. ↵↵As a member of the Flavobacterium genus, F. arcticum str. SM1502T exhibits traits typical of many marine bacteria, such as the ability to utilize a variety of organic compounds for growth and energy production. Its Gram-negative cell wall structure may confer advantages in surviving in competitive environments, particularly in polar regions where nutrient availability can be limited. ↵↵The optimal growth temperature of 25.0°C suggests that F. arcticum str. SM1502T is well-adapted to mesophilic conditions, which may reflect its adaptation to specific ecological niches within temperate marine environments. Understanding the metabolic pathways and ecological roles of such bacteria could provide insights into biogeochemical cycles and microbial community dynamics in oceanic systems. Furthermore, the distinct physiological traits of F. arcticum str. SM1502T highlight the importance of such microorganisms in nutrient cycling and their potential contributions to the functioning of polar marine ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium arcticum Gram-negative rod non-motile aerobic 25 mesophilic 1784713 NZ_CP031188.1 Bac0007305 Acinetobacter lactucae str. OTEC-02 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lactucae 1785128 NZ_CP020015.1 Bac0007306 Acinetobacter lactucae Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lactucae 1785128 RFEL00000000.1 Bac0007307 Dietzia sp. 111N12-1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia sp. 111N12-1 1785156 LSSV00000000.1 Bac0007308 Pseudomonas wadenswilerensis "Pseudomonas wadenswilerensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and utilizes organic compounds as its primary energy source, classifying it as an organotrophic chemotroph. This species is non-spore-forming and thrives optimally at a temperature of 29.0°C, suggesting a preference for moderately warm environments.↵↵The rod shape of Pseudomonas wadenswilerensis is characteristic of the Pseudomonas genus, which is known for its metabolic versatility and adaptability to various ecological niches. Its aerobic nature indicates a reliance on oxygen for energy production, which may influence its habitat preferences and interactions with other microorganisms. Given its organotrophic lifestyle, this bacterium likely plays a role in the degradation of organic matter, contributing to nutrient cycling in its environment.↵↵Understanding the traits of Pseudomonas wadenswilerensis enhances our knowledge of microbial diversity and function, particularly in environments where organic compounds are prevalent. Its ability to thrive in specific temperature ranges and its metabolic capabilities may offer insights into its ecological roles, especially in soil and aquatic ecosystems where organic substrates are abundant. The adaptability of this species to aerobic conditions underscores its potential importance in biogeochemical processes, such as organic material decomposition and nutrient recycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas wadenswilerensis Gram-negative rod aerobic 29 organotroph; chemotroph mesophilic non-spore-forming 1785161 UIDD00000000.1 Bac0007309 Pseudomonas reidholzensis "Pseudomonas reidholzensis is a Gram-negative, rod-shaped bacterium that exhibits chemotrophic and organotrophic metabolism and requires aerobic conditions for growth. This microbe thrives optimally at a temperature of approximately 29.0°C, which suggests a potential preference for environments that provide moderate thermal conditions. Notably, Pseudomonas reidholzensis does not form spores, indicating a reliance on other survival strategies to withstand environmental stresses.↵↵As an aerobic organism, Pseudomonas reidholzensis likely participates in various biogeochemical cycles, especially in environments rich in organic matter where it can utilize available organic compounds as a source of energy. Its capacity for chemotrophic growth may allow it to play a role in the degradation of organic pollutants, thereby contributing to the microbiological processes involved in bioremediation. This characteristic positions Pseudomonas reidholzensis as a potential candidate for applications in environmental microbiology, particularly in efforts aimed at the cleanup of contaminated sites. ↵↵Understanding the metabolic capabilities and environmental preferences of Pseudomonas reidholzensis enhances our knowledge of microbial diversity and function in ecological systems, potentially informing future research on its utility in biotechnological applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas reidholzensis Gram-negative rod aerobic 29 organotroph; chemotroph mesophilic non-spore-forming 1785162 UNOZ00000000.1 Bac0007310 Acinetobacter larvae str. BRTC-1 "Acinetobacter larvae str. BRTC-1 is a Gram-negative, non-spore-forming spherical bacterium that exhibits aerobic metabolic activity and thrives optimally at a temperature of 32.0°C. This strain, part of the Acinetobacter genus, is characterized by its distinctive morphology, which is typical of many species within this group. ↵↵As a member of the Acinetobacter genus, A. larvae str. BRTC-1 may play a role in various ecological niches, particularly in environments where organic matter is present and can be utilized for growth. Its aerobic nature suggests a dependency on oxygen for survival and metabolism, which aligns with the physiological requirements of many soil and water-dwelling microorganisms. ↵↵The optimal growth temperature of 32.0°C indicates that A. larvae str. BRTC-1 may be well-adapted to environments that are warm but not extreme, potentially influencing its distribution in temperate climates or specific microhabitats. Understanding the physiological traits of this strain can provide insights into its potential ecological roles, particularly in nutrient cycling and its interactions with other microbial populations in its habitat. Further research may elucidate its specific contributions to microbial communities and its adaptability to varying environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter larvae Gram-negative sphere non-motile aerobic 32 mesophilic non-spore-forming 1789224 NZ_CP016895.1 Bac0007311 Marinomonas spartinae "Marinomonas spartinae is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration. This marine microbe has been identified from environments associated with salt marsh ecosystems, where it likely plays a role in nutrient cycling and organic matter decomposition. The Gram-negative nature of M. spartinae suggests the presence of an outer membrane that may contribute to its adaptability in fluctuating salinity and oxygen levels typical of coastal habitats.↵↵The rod shape of M. spartinae is indicative of its potential motility and ability to colonize various surfaces within its environment. As an aerobic organism, it requires oxygen for growth, which aligns with its ecological niche where oxygen-rich conditions are prevalent, particularly in the water column and sediment of salt marshes.↵↵Interestingly, the presence of Marinomonas spartinae in these ecosystems may highlight its role in interactions with other microbial communities, potentially influencing the overall microbial diversity and metabolic activities within the salt marsh. The bacterium's adaptation to a coastal environment underscores the importance of aerobic microorganisms in maintaining ecological balance and supporting the health of marine ecosystems through their involvement in biogeochemical cycles." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas spartinae Gram-negative rod aerobic 1792290 FLOB00000000.1 Bac0007312 Salipiger sp. CCB-MM3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger sp. CCB-MM3 1792508 NZ_CP014597.1 Bac0007313 Rhodococcus sp. SC4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. SC4 1793160 LSBM00000000.1 Bac0007314 Halanaerobium sp. T82-1 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium sp. T82-1 1794808 LSBN00000000.1 Bac0007315 Idiomarina sp. T82-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina sp. T82-3 1794809 LSBQ00000000.1 Bac0007316 Methanolobus sp. T82-4 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus sp. T82-4 1794908 LSRV00000000.1 Bac0007317 Pseudoroseicyclus aestuarii str. CECT 9025 "Pseudoroseicyclus aestuarii strain CECT 9025 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe exhibits typical characteristics of the Pseudoroseicyclus genus, known for its adaptation to various aquatic environments. As a rod-shaped organism, it may exhibit typical bacillary morphology when observed under a microscope, contributing to its classification within the diverse realm of Gram-negative bacteria.↵↵The preference for aerobic conditions suggests that Pseudoroseicyclus aestuarii str. CECT 9025 likely engages in aerobic respiration, utilizing oxygen as the terminal electron acceptor in its metabolic processes. This trait may allow it to occupy niches where oxygen is readily available, potentially influencing the microbial community structure in its environment. ↵↵The specific optimal growth temperature of 29.0°C indicates that this strain is well-suited for temperate aquatic habitats, where such temperatures can frequently occur. Understanding the growth requirements and metabolic capabilities of Pseudoroseicyclus aestuarii str. CECT 9025 could provide insights into its role in nutrient cycling and its interactions with other microorganisms in its ecosystem. The ability to thrive in aerobic conditions may also suggest that this bacterium participates in processes that require oxygen, such as the degradation of organic matter, thereby contributing to the overall health and functioning of its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudoroseicyclus Pseudoroseicyclus aestuarii Gram-negative rod non-motile aerobic 29 mesophilic 1795041 QJTE00000000.1 Bac0007318 Burkholderia sp. PAMC 26561 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. PAMC 26561 1795043 NZ_CP014309.1 Bac0007319 Frondihabitans sp. PAMC 28766 str. SR6 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frondihabitans Frondihabitans sp. PAMC 28766 1795630 NZ_CP014514.1 Bac0007320 Thermodesulfatator autotrophicus str. S606 "Thermodesulfatator autotrophicus str. S606 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions and exhibits autotrophic, lithotrophic, and chemotrophic metabolic capabilities. This microbe has an optimal growth temperature of 45.0°C, suggesting a preference for moderately thermophilic environments. As an autotroph, T. autotrophicus str. S606 utilizes inorganic compounds as energy sources, which aligns with its classification as a lithotroph. This metabolic flexibility allows the organism to play a significant role in biogeochemical cycles, particularly in environments rich in inorganic substances.↵↵The anaerobic nature of T. autotrophicus str. S606 further emphasizes its potential ecological niche, likely inhabiting reduced environments such as deep-sea hydrothermal vents, sulfate-rich hot springs, or other geothermal sites where organic carbon sources are scarce. The ability to utilize inorganic substrates not only enables this bacterium to thrive in extreme conditions but also suggests its involvement in the sulfur cycle, possibly facilitating the reduction of sulfate to sulfide. Such traits make T. autotrophicus str. S606 a key player in the microbial ecology of extreme environments, contributing to the overall metabolic processes that sustain these unique ecosystems. The interplay between its autotrophic metabolism and anaerobic lifestyle highlights the adaptability of microbial life in extreme conditions, providing insights into the evolutionary strategies that allow life to persist in environments previously thought to be uninhabitable." Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfatatoraceae Thermodesulfatator Thermodesulfatator autotrophicus Gram-negative rod motile anaerobic 45 autotroph; lithotroph; chemotroph thermophilic 1795632 LSFI00000000.1 Bac0007321 Candidatus Syntrophonatronum acetioxidans Bacillati Bacillota Clostridia Eubacteriales Syntrophomonadaceae Candidatus Syntrophonatronum Candidatus Syntrophonatronum acetioxidans 1795816 QZAA00000000.1 Bac0007322 Eikenella longinqua Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella longinqua 1795827 LXSL00000000.1 Bac0007323 Eikenella sp. NML070372 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella sp. NML070372 1795829 LXSN00000000.1 Bac0007324 Eikenella sp. NML080894 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella sp. NML080894 1795830 LXSO00000000.1 Bac0007325 Burkholderia sp. PAMC 28687 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. PAMC 28687 1795874 NZ_CP014509.1 Bac0007326 Cupriavidus nantongensis str. X1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus nantongensis 1796606 NZ_CP014846.1 Bac0007327 Cuneatibacter caecimuris str. DSM 29486 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Cuneatibacter Cuneatibacter caecimuris microaerophile 1796618 SGXF00000000.1 Bac0007328 Longibaculum muris str. DSM 29487 "Longibaculum muris str. DSM 29487 is a rod-shaped, anaerobic bacterium characterized by its arrangement in chains and its nonsporulating nature. This microorganism is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, a trait that reflects its ecological niche. ↵↵L. muris is found within the intestinal microflora of animals, suggesting its role in the complex ecosystem of gut microbiota. The presence of such bacteria is crucial for the digestion and metabolism of nutrients, contributing to the overall health and functionality of the host's gastrointestinal system. ↵↵Further exploration of Longibaculum muris str. DSM 29487 could provide valuable insights into the dynamics of gut microbial communities, particularly in understanding how chain-forming bacteria interact with other microbial inhabitants and their collective influence on host physiology." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Longibaculum Longibaculum muris Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Chains Nonsporulating 1796628 SMCQ00000000.1 Bac0007329 Muricomes intestini str. DSM 29489 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Muricomes Muricomes intestini anaerobic 1796634 SLZZ00000000.1 Bac0007330 Rodentibacter caecimuris "Rodentibacter caecimuris is a Gram-negative, rod-shaped bacterium that is part of the microbiota associated with rodents. This microbe is characterized by its cylindrical morphology, which is typical of many members of the Gammaproteobacteria class. The Gram-negative nature of R. caecimuris indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that influences its interactions within the host environment and its response to antibiotics. ↵↵While the specific ecological roles and interactions of R. caecimuris within the rodent gut microbiome remain to be fully elucidated, its rod shape may contribute to competitive advantages in nutrient acquisition and colonization of the intestinal niche. The presence of such bacteria within rodent species could also have implications for understanding host-microbe interactions, particularly regarding how these microbes may influence digestion, metabolism, or even the overall health of their host. ↵↵Future studies could provide insights into the symbiotic relationships R. caecimuris maintains within its rodent hosts and how it may play a role in the complex microbial communities that exist in the gastrointestinal tract of these animals. This highlights the potential importance of R. caecimuris in maintaining gut health and stability in its rodent hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter caecimuris negative Rod 1796644 MLAA00000000.1 Bac0007331 Muribaculum intestinale "Muribaculum intestinale is a Gram-negative, nonsporulating, anaerobic bacterium that thrives within the intestinal microflora of animals, notable for its role in the gut microbiome of mice. This mesophilic microbe exhibits an optimal growth temperature of around 37 degrees Celsius, which aligns with the body temperature of its natural host. M. intestinale is a chemoheterotroph, relying on fermentative metabolism to derive energy from various organic compounds present in the gut environment. The presence of M. intestinale in the gut is significant as it contributes to the overall health of the host by participating in the fermentation of complex carbohydrates, ultimately aiding in nutrient absorption and synthesis of short-chain fatty acids, which are vital for gut health and immune function. Its ability to thrive in an anaerobic environment allows it to effectively colonize the intestinal tract, where oxygen levels are minimal. Moreover, M. intestinale is positioned within a complex ecosystem where microbial interactions can influence host physiology and disease susceptibility. Research into this bacterium highlights its potential role in modulating the gut microbiome balance, which is essential for preventing dysbiosis—a condition linked to various gastrointestinal disorders. Understanding the function of M. intestinale may also provide insights into how specific gut microbes can be leveraged to enhance gut health or develop probiotic therapies for managing gut-related diseases in both humans and animals." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculum Muribaculum intestinale Negative No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 1796646 NZ_CP015402.2 Bac0007332 Ereboglobus luteus str. Ho45 Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Ereboglobus Ereboglobus luteus 1796921 NZ_CP023004.1 Bac0007333 Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 Pseudomonadati Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 1797180 MEKR00000000.1 Bac0007334 Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 Pseudomonadati Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 1797182 MEKT00000000.1 Bac0007335 Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 Pseudomonadati Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 1797183 MEKU00000000.1 Bac0007336 Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 Pseudomonadati Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 1797185 MEKW00000000.1 Bac0007337 Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 Pseudomonadati Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 1797191 MELC00000000.1 Bac0007338 Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 1797226 MEMO00000000.1 Bac0007339 Acinetobacter sp. GWC1_38_13 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. GWC1_38_13 1797234 MELG00000000.1 Bac0007340 Candidatus Aminicenantes bacterium RBG_16_63_16 Candidatus Aminicenantota Candidatus Aminicenantes bacterium RBG_16_63_16 1797273 MEYB00000000.1 Bac0007341 Candidatus Sediminicultor quintus Pseudomonadati Atribacterota Candidatus Phoenicimicrobiia Candidatus Pheonicimicrobiales Candidatus Phoenicimicrobiaceae Candidatus Sediminicultor Candidatus Sediminicultor quintus 1797291 MEYH00000000.1 Bac0007342 Bacteroidetes bacterium GWA2_40_15 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWA2_40_15 1797319 MENI00000000.1 Bac0007343 Bacteroidetes bacterium GWE2_39_28 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWE2_39_28 1797333 MENW00000000.1 Bac0007344 Bacteroidetes bacterium GWF2_40_14 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWF2_40_14 1797347 MEOK00000000.1 Bac0007345 Bacteroidetes bacterium GWF2_41_31 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWF2_41_31 1797348 MEOL00000000.1 Bac0007346 Bacteroidetes bacterium GWF2_42_66 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWF2_42_66 1797351 MEOO00000000.1 Bac0007347 Bacteroidetes bacterium GWF2_49_14 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWF2_49_14 1797354 MEOR00000000.1 Bac0007348 Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 Pseudomonadati Bacteroidota Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 1797364 MEPB00000000.1 Bac0007349 Candidatus Bathyarchaeota archaeon RBG_13_38_9 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon RBG_13_38_9 1797377 MEZD00000000.1 Bac0007350 Candidatus Bathyarchaeota archaeon RBG_13_52_12 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon RBG_13_52_12 1797379 MEZF00000000.1 Bac0007351 Candidatus Bathyarchaeota archaeon RBG_16_48_13 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon RBG_16_48_13 1797381 MEZH00000000.1 Bac0007352 Candidatus Bathyarchaeota archaeon RBG_16_57_9 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon RBG_16_57_9 1797382 MEZI00000000.1 Bac0007353 Bdellovibrionales bacterium RIFOXYC1_FULL_39_130 Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Bdellovibrionales bacterium RIFOXYC1_FULL_39_130 1797396 MEQC00000000.1 Bac0007354 Betaproteobacteria bacterium RBG_16_64_18 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RBG_16_64_18 1797477 MEQO00000000.1 Bac0007355 Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 1797492 MERD00000000.1 Bac0007356 Burkholderiales bacterium GWA2_64_37 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium GWA2_64_37 1797549 MERR00000000.1 Bac0007357 Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 1797552 MERU00000000.1 Bac0007358 Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 1797561 MESD00000000.1 Bac0007359 Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 1797562 MESE00000000.1 Bac0007360 Burkholderiales bacterium RIFCSPLOWO2_02_FULL_67_64 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFCSPLOWO2_02_FULL_67_64 1797564 MESG00000000.1 Bac0007361 Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 1797569 MESL00000000.1 Bac0007362 Chloroflexi bacterium GWB2_49_20 Bacillati Chloroflexota Chloroflexi bacterium GWB2_49_20 1797612 MGMF00000000.1 Bac0007363 Chloroflexi bacterium GWB2_54_36 Bacillati Chloroflexota Chloroflexi bacterium GWB2_54_36 1797613 MGMG00000000.1 Bac0007364 Chloroflexi bacterium RBG_13_51_36 Bacillati Chloroflexota Chloroflexi bacterium RBG_13_51_36 1797625 MGMS00000000.1 Bac0007365 Chloroflexi bacterium RBG_16_57_11 Bacillati Chloroflexota Chloroflexi bacterium RBG_16_57_11 1797651 MGNS00000000.1 Bac0007366 Curvibacter sp. GWA2_64_110 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Curvibacter Curvibacter sp. GWA2_64_110 1797747 MGPC00000000.1 Bac0007367 Deltaproteobacteria bacterium GWC2_65_14 Deltaproteobacteria Deltaproteobacteria bacterium GWC2_65_14 1797820 MGPV00000000.1 Bac0007368 Deltaproteobacteria bacterium RBG_16_64_85 Deltaproteobacteria Deltaproteobacteria bacterium RBG_16_64_85 1797846 MGQW00000000.1 Bac0007369 Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_43_16 Deltaproteobacteria Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_43_16 1797889 MGSN00000000.1 Bac0007370 Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19 Deltaproteobacteria Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19 1797894 MGSS00000000.1 Bac0007371 Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 Deltaproteobacteria Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 1797895 MGST00000000.1 Bac0007372 Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24 Deltaproteobacteria Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24 1797905 MGTD00000000.1 Bac0007373 Desulfobacterales bacterium RIFOXYA12_FULL_46_15 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacterales bacterium RIFOXYA12_FULL_46_15 1797914 MGTJ00000000.1 Bac0007374 Elusimicrobia bacterium GWA2_56_46 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium GWA2_56_46 1797922 MGTT00000000.1 Bac0007375 Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 1797951 MGUW00000000.1 Bac0007376 Flavobacteria bacterium GWF1_32_7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteria bacterium GWF1_32_7 1798014 MGWI00000000.1 Bac0007377 Erythrobacter sp. HL-111 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. HL-111 1798193 NZ_LT629743.1 Bac0007378 Collimonas sp. OK607 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas sp. OK607 1798194 FOKF00000000.1 Bac0007379 Cohaesibacter sp. ES.047 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Cohaesibacteraceae Cohaesibacter Cohaesibacter sp. ES.047 1798205 NZ_LT907844.1 Bac0007380 Leifsonia sp. CL147 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. CL147 1798215 FOTM00000000.1 Bac0007381 Gallionellales bacterium GWA2_54_124 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellales bacterium GWA2_54_124 1798243 MGWO00000000.1 Bac0007382 Gallionellales bacterium RIFCSPLOWO2_02_FULL_57_47 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellales bacterium RIFCSPLOWO2_02_FULL_57_47 1798254 MGWZ00000000.1 Bac0007383 Gallionellales bacterium RIFCSPLOWO2_12_FULL_59_22 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellales bacterium RIFCSPLOWO2_12_FULL_59_22 1798257 MGXC00000000.1 Bac0007384 Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 1798300 MGYT00000000.1 Bac0007385 Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 1798308 MGZB00000000.1 Bac0007386 Geobacteraceae bacterium GWC2_55_20 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacteraceae bacterium GWC2_55_20 1798317 MGZK00000000.1 Bac0007387 Geobacteraceae bacterium GWC2_58_44 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacteraceae bacterium GWC2_58_44 1798318 MGZL00000000.1 Bac0007388 Ignavibacteria bacterium GWA2_35_9 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium GWA2_35_9 1798418 MGZQ00000000.1 Bac0007389 Ignavibacteria bacterium GWC2_36_12 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium GWC2_36_12 1798427 MGZZ00000000.1 Bac0007390 Ignavibacteria bacterium RBG_16_34_14 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium RBG_16_34_14 1798433 MHAF00000000.1 Bac0007391 Ignavibacteria bacterium RIFOXYD12_FULL_36_8 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium RIFOXYD12_FULL_36_8 1798454 MHBA00000000.1 Bac0007392 Candidatus Zhuqueibacterota bacterium RBG_16_48_16 Pseudomonadati Candidatus Zhuqueibacterota bacterium RBG_16_48_16 1798559 METF00000000.1 Bac0007393 Legionellales bacterium RIFCSPHIGHO2_12_FULL_37_14 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellales bacterium RIFCSPHIGHO2_12_FULL_37_14 1798568 MHBC00000000.1 Bac0007394 Lentisphaerae bacterium GWF2_38_69 Pseudomonadati Lentisphaerota Lentisphaerae bacterium GWF2_38_69 1798570 MHBE00000000.1 Bac0007395 Lentisphaerae bacterium GWF2_49_21 Pseudomonadati Lentisphaerota Lentisphaerae bacterium GWF2_49_21 1798573 MHBH00000000.1 Bac0007396 Lentisphaerae bacterium GWF2_50_93 Pseudomonadati Lentisphaerota Lentisphaerae bacterium GWF2_50_93 1798574 MHBI00000000.1 Bac0007397 Lentisphaerae bacterium GWF2_57_35 Pseudomonadati Lentisphaerota Lentisphaerae bacterium GWF2_57_35 1798576 MHBK00000000.1 Bac0007398 Lentisphaerae bacterium RIFOXYA12_FULL_48_11 Pseudomonadati Lentisphaerota Lentisphaerae bacterium RIFOXYA12_FULL_48_11 1798578 MHBM00000000.1 Bac0007399 Methylothermaceae bacteria B42 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylothermaceae Methylothermaceae bacteria B42 1798802 LSNW00000000.1 Bac0007400 Rhizobium sp. 58 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. 58 1798804 LSRO00000000.1 Bac0007401 Candidatus Nitrosocosmicus franklandus Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus 1798806 NZ_LR216287.1 Bac0007402 Prochlorococcus sp. MIT 1306 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 1306 1799667 LVHL00000000.1 Bac0007403 Candidatus Melainabacteria bacterium GWF2_37_15 Bacillati Candidatus Melainabacteria Candidatus Melainabacteria bacterium GWF2_37_15 1801606 MFRL00000000.1 Bac0007404 Candidatus Melainabacteria bacterium RIFOXYA12_FULL_32_12 Bacillati Candidatus Melainabacteria Candidatus Melainabacteria bacterium RIFOXYA12_FULL_32_12 1801610 MFRP00000000.1 Bac0007405 Prochlorococcus marinus str. MIT 1318 "Prochlorococcus marinus str. MIT 1318 is a Gram-negative, cocci-shaped marine cyanobacterium that utilizes photosynthesis as its primary energy source. This microorganism thrives in aquatic environments, where it plays a crucial role in primary production and carbon cycling. ↵↵As a member of the Prochlorococcus genus, str. MIT 1318 exhibits unique adaptations that enable it to dominate oligotrophic (nutrient-poor) marine ecosystems, particularly in surface waters. Its photosynthetic capabilities are enhanced by specialized pigments, allowing it to efficiently capture light energy, even in low-light conditions often found in deeper oceanic layers. ↵↵Prochlorococcus marinus str. MIT 1318 contributes significantly to the global carbon cycle, influencing atmospheric CO2 levels through the fixation of carbon during photosynthesis. This microbe is not only a key player in marine food webs but also serves as an indicator of ocean health due to its sensitivity to changes in light and nutrient availability. ↵↵Understanding the traits and ecological role of Prochlorococcus marinus str. MIT 1318 provides valuable insights into the functioning of marine ecosystems and emphasizes the importance of phytoplankton in sustaining oceanic productivity and regulating climate." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 1801622 LVHO00000000.1 Bac0007406 Prochlorococcus marinus str. MIT 1320 "Prochlorococcus marinus strain MIT 1320 is a Gram-negative, coccoid-shaped marine cyanobacterium that plays a pivotal role in aquatic ecosystems as a photosynthetic organism. This microbe is adapted to thrive in the oligotrophic waters of the ocean, where it harnesses sunlight to convert carbon dioxide and water into organic compounds, thereby contributing significantly to primary production in its environment. ↵↵Characterized by its small cell size and high surface-to-volume ratio, Prochlorococcus marinus str. MIT 1320 exhibits a remarkable efficiency in nutrient acquisition, which is crucial for survival in nutrient-scarce habitats. Its photosynthetic apparatus includes unique pigment compositions that enable it to absorb light in the blue and green wavelengths, allowing it to thrive in deeper layers of the euphotic zone where light penetration is limited.↵↵This strain is not only a keystone species in marine food webs but also contributes to global biogeochemical cycles, particularly in terms of carbon fixation and oxygen production. The ecological significance of Prochlorococcus marinus str. MIT 1320 is underscored by its ability to adapt to varying light conditions, which may influence its distribution and abundance in the open ocean. Understanding the functional traits of this microbe provides insights into the dynamics of marine ecosystems and the potential impacts of climate change on primary producers in aquatic environments." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 1801623 LVHP00000000.1 Bac0007407 Prochlorococcus marinus str. MIT 1323 "Prochlorococcus marinus str. MIT 1323 is a Gram-negative, coccoid cyanobacterium that utilizes photosynthesis as its primary energy source. This microbe thrives in aquatic environments, where it plays a significant role in marine ecosystems. As a member of the Prochlorococcus genus, it possesses unique adaptations that allow it to efficiently capture light energy, even in low-light conditions typical of deep ocean waters.↵↵The coccoid shape of Prochlorococcus marinus str. MIT 1323 facilitates its buoyancy and distribution in aquatic habitats, promoting its survival and proliferation in diverse marine settings. Its photosynthetic capabilities contribute significantly to primary production in the oceans, thus supporting various trophic levels and influencing global carbon cycles.↵↵Research into this strain provides insights into the physiological and ecological roles of cyanobacteria in oceanic environments, particularly regarding their contributions to biogeochemical processes. Prochlorococcus marinus str. MIT 1323 exemplifies the complexity of microbial life in the ocean and highlights the importance of such microorganisms in maintaining the health and functionality of marine ecosystems. Understanding the traits and behaviors of this strain can enhance our knowledge of microbial ecology and inform broader studies on oceanic health and climate change impacts." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 1801625 LVHQ00000000.1 Bac0007408 Prochlorococcus marinus str. MIT 1327 "Prochlorococcus marinus strain MIT 1327 is a Gram-negative, coccoid microorganism that plays a significant role as a photosynthetic organism in aquatic environments. This marine cyanobacterium is renowned for its efficient light-harvesting capabilities, allowing it to thrive in oligotrophic ocean waters where nutrients are scarce. As a photosynthetic microbe, it utilizes sunlight to convert carbon dioxide and water into organic compounds, contributing to primary production in marine ecosystems.↵↵The coccoid morphology of Prochlorococcus marinus str. MIT 1327 facilitates its adaptation to varying light conditions, enabling it to occupy distinct niches within the photic zone of the ocean. This strain is particularly notable for its small cell size, which enhances its surface area-to-volume ratio, optimizing nutrient uptake in low-nutrient environments.↵↵Prochlorococcus marinus is a key player in the global carbon cycle, contributing to carbon fixation and influencing the biogeochemistry of marine environments. Its ability to thrive in such diverse light and nutrient conditions emphasizes the evolutionary adaptations that have allowed it to become one of the most abundant photosynthetic organisms in the open ocean. The ecological significance of Prochlorococcus extends beyond its role in carbon cycling; it also serves as a foundational component of the marine food web, supporting various marine organisms and influencing overall marine biodiversity. Understanding the traits and ecological functions of Prochlorococcus marinus str. MIT 1327 enhances our comprehension of microbial contributions to oceanic productivity and nutrient cycling." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 1801626 LVHR00000000.1 Bac0007409 Prochlorococcus marinus str. MIT 1342 "Prochlorococcus marinus str. MIT 1342 is a Gram-negative, coccoid cyanobacterium known for its photosynthetic capabilities. This microbe thrives in aquatic environments, where it plays a significant role in primary production. Characterized by its small cell size and high photosynthetic efficiency, Prochlorococcus marinus str. MIT 1342 is adapted to low-light conditions, making it particularly abundant in oligotrophic waters. ↵↵As a photosynthetic organism, it utilizes light energy to convert carbon dioxide and water into organic compounds, releasing oxygen as a byproduct. This process is crucial for the marine carbon cycle and contributes to the overall oxygen levels in oceanic environments. Prochlorococcus marinus str. MIT 1342 is notable for its ability to harness a range of light wavelengths, which allows it to occupy various niches in the water column, from the surface to deeper layers where light penetration is limited.↵↵Furthermore, the ecological significance of Prochlorococcus marinus str. MIT 1342 extends beyond its role as a primary producer. Its prevalence in the ocean contributes to the food web and supports various marine life forms, indicating its importance in maintaining the health and stability of marine ecosystems. Understanding the traits and functions of this microbe is crucial for comprehending broader biogeochemical cycles and the responses of marine environments to climate change." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 1801627 LVHS00000000.1 Bac0007410 Synechococcus sp. MIT S9504 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. MIT S9504 1801628 LVHT00000000.1 Bac0007411 Synechococcus sp. MIT S9508 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. MIT S9508 1801629 LVHU00000000.1 Bac0007412 Candidatus Micrarchaeota archaeon RBG_16_36_9 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon RBG_16_36_9 1801632 MFRR00000000.1 Bac0007413 candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18 Methylomirabilota (SeqCode) candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18 1801659 METI00000000.1 Bac0007414 Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 Pseudomonadati Nitrospinota Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 1801687 MHDQ00000000.1 Bac0007415 Candidatus Danuiimicrobium aquiferis Pseudomonadati Candidatus Omnitrophota Candidatus Danuiimicrobium Candidatus Danuiimicrobium aquiferis 1801832 MHFR00000000.1 Bac0007416 Omnitrophica bacterium RIFCSPLOWO2_12_FULL_45_13 Pseudomonadati Candidatus Omnitrophota Omnitrophica bacterium RIFCSPLOWO2_12_FULL_45_13 1801833 MHFS00000000.1 Bac0007417 Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12 Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium RIFOXYB12_FULL_41_12 1801905 MFXI00000000.1 Bac0007418 Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 1801914 MFXP00000000.1 Bac0007419 Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 1801934 MFYJ00000000.1 Bac0007420 Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_69_31 1801944 MHXN00000000.1 Bac0007421 Pseudomonadales bacterium RIFCSPHIGHO2_01_FULL_64_12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadales bacterium RIFCSPHIGHO2_01_FULL_64_12 1802004 MHZJ00000000.1 Bac0007422 Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 1802005 MHZK00000000.1 Bac0007423 Pseudomonadales bacterium RIFCSPHIGHO2_12_FULL_40_16 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadales bacterium RIFCSPHIGHO2_12_FULL_40_16 1802006 MHZL00000000.1 Bac0007424 Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_58_28 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_58_28 1802022 MIAB00000000.1 Bac0007425 Candidatus Rokubacteria bacterium GWA2_70_23 Candidatus Rokuibacteriota Candidatus Rokubacteria bacterium GWA2_70_23 1802095 MGBT00000000.1 Bac0007426 Candidatus Rokubacteria bacterium GWC2_70_16 Candidatus Rokuibacteriota Candidatus Rokubacteria bacterium GWC2_70_16 1802097 MGBV00000000.1 Bac0007427 Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_73_47 Candidatus Rokuibacteriota Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_73_47 1802111 MGCJ00000000.1 Bac0007428 Sphingobacteriia bacterium RIFOXYD2_FULL_35_12 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriia bacterium RIFOXYD2_FULL_35_12 1802167 MIAH00000000.1 Bac0007429 Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 1802169 MIAJ00000000.1 Bac0007430 Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 1802172 MIAM00000000.1 Bac0007431 Spirochaetes bacterium GWB1_36_13 Pseudomonadati Spirochaetota Spirochaetes bacterium GWB1_36_13 1802174 MIAO00000000.1 Bac0007432 Spirochaetes bacterium GWF1_31_7 Pseudomonadati Spirochaetota Spirochaetes bacterium GWF1_31_7 1802187 MIBB00000000.1 Bac0007433 Sulfuricurvum sp. RIFOXYD2_FULL_44_160 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. RIFOXYD2_FULL_44_160 1802249 MIBV00000000.1 Bac0007434 Sulfurimonas sp. RIFCSPLOWO2_12_36_12 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp. RIFCSPLOWO2_12_36_12 1802253 MIBZ00000000.1 Bac0007435 Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15 Candidatus Terryibacteriota Candidatus Terrybacteria bacterium RIFCSPHIGHO2_01_FULL_58_15 1802363 MHST00000000.1 Bac0007436 Treponema sp. GWC1_61_84 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. GWC1_61_84 1802380 MIDM00000000.1 Bac0007437 candidate division WOR-1 bacterium RIFCSPLOWO2_02_FULL_46_20 Bacillati candidate division WOR-1 bacterium RIFCSPLOWO2_02_FULL_46_20 1802567 METP00000000.1 Bac0007438 candidate division WOR-1 bacterium RIFOXYB2_FULL_36_35 Bacillati candidate division WOR-1 bacterium RIFOXYB2_FULL_36_35 1802578 MEUA00000000.1 Bac0007439 Paenibacillus sambharensis Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sambharensis 1803190 QKRB00000000.1 Bac0007440 Lewinella sp. 4G2 Pseudomonadati Bacteroidota Saprospiria Saprospirales Lewinellaceae Lewinella Lewinella sp. 4G2 1803372 LVWJ00000000.2 Bac0007441 Candidatus Aenigmarchaeota archaeon CG1_02_38_14 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon CG1_02_38_14 1803500 MNUF00000000.1 Bac0007442 Alphaproteobacteria bacterium CG1_02_46_17 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium CG1_02_46_17 1803508 MNUG00000000.1 Bac0007443 Flavivirga eckloniae str. ECD14 "Flavivirga eckloniae strain ECD14 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is characterized by its non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic conditions. As a member of the Flavivirga genus, it is likely to possess metabolic capabilities that enable it to utilize a variety of organic compounds, although specific metabolic pathways have not been detailed in the provided traits.↵↵The aerobic requirement of F. eckloniae str. ECD14 suggests that it is adapted to environments where oxygen is available, potentially influencing its ecological niches and interactions with other microorganisms. Its optimal growth temperature indicates that it may be found in temperate aquatic environments, where conditions align with its growth preferences.↵↵An interesting aspect of this strain lies in its potential role in the degradation of organic matter, particularly in marine ecosystems, which could be significant for nutrient cycling and the maintenance of ecological balance. The ability to thrive at a specific temperature and under aerobic conditions may reflect an evolutionary adaptation to its niche, contributing to the functional diversity of microbial communities in coastal environments. This adaptability underscores the importance of studying such microorganisms to uncover their roles in biogeochemical processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavivirga Flavivirga eckloniae Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1803846 NZ_CP025791.1 Bac0007444 Thiomicrospira sp. S5 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira sp. S5 1803865 NZ_CP014470.1 Bac0007445 Amycolatopsis albispora str. WP1 "Amycolatopsis albispora strain WP1 is a Gram-positive, spore-forming bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0°C. This microbe is characterized by its ability to produce spores, which may confer advantages for survival in fluctuating environmental conditions, such as desiccation or nutrient scarcity. The Gram-positive nature of A. albispora str. WP1 suggests a robust cell wall structure, which is typically associated with a thick peptidoglycan layer, potentially influencing its resistance to certain antimicrobial agents.↵↵The optimal growth temperature of 32.0°C indicates that this strain is likely adapted to moderate thermal environments, which may correlate with its ecological niche in soil or decaying organic matter, where it can participate in nutrient cycling. As an aerobic organism, A. albispora str. WP1 requires oxygen for its metabolic processes, implying a role in the decomposition of organic material and the maintenance of soil health.↵↵Understanding the spore-forming capability and growth conditions of A. albispora str. WP1 could provide insights into its potential applications in biotechnology, particularly in bioremediation or as a source of novel antibiotics. The ecological role of this microbe in its natural habitat highlights the importance of aerobic bacteria in maintaining ecological balance and facilitating nutrient cycling." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis albispora Gram-positive non-motile aerobic 32 mesophilic spore-forming 1804986 NZ_CP015163.1 Bac0007446 Exiguobacterium sp. KKBO11 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. KKBO11 1805000 LUCU00000000.1 Bac0007447 archaeon 13_2_20CM_2_52_21 archaeon 13_2_20CM_2_52_21 1805019 MNDU00000000.1 Bac0007448 Candidatus Infernicultor aquiphilus Pseudomonadati Atribacterota Candidatus Phoenicimicrobiia Candidatus Pheonicimicrobiales Candidatus Phoenicimicrobiaceae Candidatus Infernicultor Candidatus Infernicultor aquiphilus 1805029 PFKO00000000.1 Bac0007449 Crenarchaeota archaeon 13_1_40CM_2_52_14 Thermoproteati Thermoproteota Crenarchaeota archaeon 13_1_40CM_2_52_14 1805092 MNHJ00000000.1 Bac0007450 Crenarchaeota archaeon 13_1_40CM_3_52_10 Thermoproteati Thermoproteota Crenarchaeota archaeon 13_1_40CM_3_52_10 1805095 MNGO00000000.1 Bac0007451 Crenarchaeota archaeon 13_1_40CM_3_52_17 Thermoproteati Thermoproteota Crenarchaeota archaeon 13_1_40CM_3_52_17 1805096 MNGN00000000.1 Bac0007452 Desulfobacteraceae bacterium CG2_30_51_40 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacteraceae bacterium CG2_30_51_40 1805128 MNYJ00000000.1 Bac0007453 Flavobacteriaceae bacterium CG1_02_35_72 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium CG1_02_35_72 1805158 MNUW00000000.1 Bac0007454 Gemmatimonadetes bacterium 13_1_40CM_4_69_8 Pseudomonadati Gemmatimonadota Gemmatimonadetes bacterium 13_1_40CM_4_69_8 1805193 MNFG00000000.1 Bac0007455 Helicobacteraceae bacterium CG1_02_36_14 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacteraceae bacterium CG1_02_36_14 1805214 MNUZ00000000.1 Bac0007456 Candidatus Hydrogenedentes bacterium CG1_02_42_14 Pseudomonadati Candidatus Hydrogenedentota Candidatus Hydrogenedentes bacterium CG1_02_42_14 1805216 MNVL00000000.1 Bac0007457 Hydrogenophilaceae bacterium CG1_02_62_390 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilaceae Hydrogenophilaceae bacterium CG1_02_62_390 1805218 MNXE00000000.1 Bac0007458 Ignavibacteria bacterium CG1_02_37_35 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium CG1_02_37_35 1805220 MNVA00000000.1 Bac0007459 Candidatus Micrarchaeota archaeon CG1_02_51_15 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG1_02_51_15 1805249 MNVG00000000.1 Bac0007460 Candidatus Omnitrophica bacterium CG1_02_43_210 Pseudomonadati Candidatus Omnitrophota Candidatus Omnitrophica bacterium CG1_02_43_210 1805286 MNXF00000000.1 Bac0007461 Oscillatoriales cyanobacterium CG2_30_44_21 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriales cyanobacterium CG2_30_44_21 1805292 MNZA00000000.1 Bac0007462 Candidatus Pacearchaeota archaeon CG1_02_32_132 Nanobdellati Candidatus Pacearchaeota archaeon CG1_02_32_132 1805295 MNXG00000000.1 Bac0007463 Candidatus Rokubacteria bacterium 13_1_20CM_4_68_9 Candidatus Rokuibacteriota Candidatus Rokubacteria bacterium 13_1_20CM_4_68_9 1805346 MNIO00000000.1 Bac0007464 Thaumarchaeota archaeon 13_1_40CM_3_38_6 Thermoproteati Nitrososphaerota Thaumarchaeota archaeon 13_1_40CM_3_38_6 1805390 MNFZ00000000.1 Bac0007465 Thiomicrospira sp. CG2_30_44_34 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira sp. CG2_30_44_34 1805397 MNZS00000000.1 Bac0007466 Zetaproteobacteria bacterium CG2_30_59_37 Pseudomonadati Pseudomonadota Candidatius Mariprofundia Zetaproteobacteria bacterium CG2_30_59_37 1805430 MNZW00000000.1 Bac0007467 Acinetobacter sp. SFB Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. SFB 1805634 LSZH00000000.1 Bac0007468 Halomonas sp. ALS9 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. ALS9 1805819 LXRG00000000.1 Bac0007469 Microbacterium sp. CGR2 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. CGR2 1805820 RBHX00000000.1 Bac0007470 Pseudomonas sp. ERMR1:02 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ERMR1:02 1805930 NKJI00000000.1 Bac0007471 Bacillus sp. RZ2MS9 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. RZ2MS9 1806216 NZ_CP049978.1 Bac0007472 Achromobacter sp. 2789STDY5608628 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter sp. 2789STDY5608628 1806493 CYTT00000000.1 Bac0007473 Achromobacter dolens Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter dolens aerobic 1806497 CYSX00000000.1 Bac0007474 Achromobacter ruhlandii Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter ruhlandii 1806498 CYUB00000000.1 Bac0007475 Candidatus Promineifilum breve Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve 1806508 NZ_LN890657.1 Bac0007476 Fusicatenibacter sp. 2789STDY5834925 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Fusicatenibacter Fusicatenibacter sp. 2789STDY5834925 1806509 CZBC00000000.1 Bac0007477 Sphingorhabdus sp. M41 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Sphingorhabdus Sphingorhabdus sp. M41 1806885 NZ_CP014545.1 Bac0007478 Candidatus Chlamydia sanziniae Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Candidatus Chlamydia sanziniae 1806891 NZ_CP014640.1 Bac0007479 Acinetobacter pragensis str. ANC 4149 "Acinetobacter pragensis str. ANC 4149 is a Gram-negative, spherical bacterium that exhibits aerobic metabolism. This species is characterized by its distinct morphological shape, which plays a crucial role in its identification and classification within the Acinetobacter genus. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical for many bacteria in this group and may influence its interaction with environmental factors and other microorganisms.↵↵As an aerobic organism, A. pragensis str. ANC 4149 requires oxygen for its growth and metabolic processes, suggesting that it is adapted to environments where oxygen is readily available. This trait is significant for understanding its potential ecological niches, as aerobic bacteria are often found in well-oxygenated soils, water bodies, and clinical settings where oxygen is present.↵↵The structural characteristics and oxygen requirements of A. pragensis str. ANC 4149 may provide insights into its metabolic capabilities and ecological roles. For instance, its spherical shape could be an adaptation to specific environmental pressures, enhancing its survival and competitiveness in aerobic habitats. Understanding these traits can contribute to a broader comprehension of microbial diversity and functionality in various ecosystems, particularly in areas influenced by human activity and environmental change." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pragensis Gram-negative sphere non-motile aerobic 1806892 LUAW00000000.1 Bac0007480 Branchiibius sp. NY16-3462-2 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Branchiibius Branchiibius sp. NY16-3462-2 1807500 LVCF00000000.1 Bac0007481 Acinetobacter sp. LoGeW2-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. LoGeW2-3 1808001 NZ_CP024011.1 Bac0007482 Ligilactobacillus salitolerans Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salitolerans 1808352 BFFP00000000.1 Bac0007483 Piscirickettsiaceae bacterium NZ-RLO1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsiaceae bacterium NZ-RLO1 1810840 LVCQ00000000.1 Bac0007484 Methanobacterium sp. PtaB.Bin024 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaB.Bin024 1811674 MVPY00000000.1 Bac0007485 Methanosaeta sp. PtaB.Bin018 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaB.Bin018 1811684 MVQH00000000.1 Bac0007486 Methanosaeta sp. PtaU1.Bin016 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaU1.Bin016 1811686 MVRI00000000.1 Bac0007487 Methanosaeta sp. PtaU1.Bin028 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaU1.Bin028 1811687 MVRJ00000000.1 Bac0007488 Methanosaeta sp. PtaU1.Bin112 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaU1.Bin112 1811689 MVRL00000000.1 Bac0007489 Pelotomaculum sp. PtaB.Bin117 Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Pelotomaculum Pelotomaculum sp. PtaB.Bin117 1811694 MVQM00000000.1 Bac0007490 Pelotomaculum sp. PtaU1.Bin035 Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Pelotomaculum Pelotomaculum sp. PtaU1.Bin035 1811695 MVRN00000000.1 Bac0007491 Pelotomaculum sp. PtaU1.Bin065 Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Pelotomaculum Pelotomaculum sp. PtaU1.Bin065 1811696 MVRO00000000.1 Bac0007492 Syntrophorhabdus sp. PtaB.Bin006 Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdus Syntrophorhabdus sp. PtaB.Bin006 1811698 MVQN00000000.1 Bac0007493 Syntrophorhabdus sp. PtaB.Bin027 Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdus Syntrophorhabdus sp. PtaB.Bin027 1811699 MVQO00000000.1 Bac0007494 Syntrophorhabdus sp. PtaB.Bin047 Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdus Syntrophorhabdus sp. PtaB.Bin047 1811700 MVQP00000000.1 Bac0007495 Syntrophorhabdus sp. PtaU1.Bin002 Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdus Syntrophorhabdus sp. PtaU1.Bin002 1811702 MVRQ00000000.1 Bac0007496 Syntrophorhabdus sp. PtaU1.Bin058 Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdus Syntrophorhabdus sp. PtaU1.Bin058 1811704 MVRS00000000.1 Bac0007497 Syntrophorhabdus sp. PtaU1.Bin153 Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdus Syntrophorhabdus sp. PtaU1.Bin153 1811705 MVRT00000000.1 Bac0007498 Syntrophus sp. PtaB.Bin138 Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. PtaB.Bin138 1811711 MVQU00000000.1 Bac0007499 Syntrophus sp. PtaU1.Bin005 Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. PtaU1.Bin005 1811712 MVRU00000000.1 Bac0007500 Methanomassiliicoccales archaeon PtaU1.Bin030 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccales archaeon PtaU1.Bin030 1811729 MVRB00000000.1 Bac0007501 [Bacillus] sp. KCTC 13219 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus [Bacillus] sp. KCTC 13219 1811976 LUFJ00000000.1 Bac0007502 Oceanihabitans sediminis str. S9-10 "Oceanihabitans sediminis strain S9-10 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism. This organism is characterized by its ability to thrive in oxygen-rich environments, which is a key aspect of its metabolic processes. The Gram-negative nature of Oceanihabitans sediminis str. S9-10 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a feature common to many bacteria that inhabit aquatic environments.↵↵The rod shape of this microbe may confer advantages in motility and nutrient acquisition, potentially allowing it to effectively navigate through sediment and water columns. The aerobic requirement indicates that it relies on oxygen for energy production, which could influence its distribution in marine sediments where oxygen availability varies.↵↵Given its traits, Oceanihabitans sediminis str. S9-10 may play a significant role in the biogeochemical cycling of nutrients in marine ecosystems, particularly in the degradation of organic matter in oxygenated sediments. This could contribute to the overall health of marine environments by facilitating nutrient recycling and supporting the microbial community structure. Further research may elucidate its specific interactions within these ecosystems, enhancing our understanding of microbial diversity and function in ocean sediments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Oceanihabitans Oceanihabitans sediminis Gram-negative rod motile aerobic 1812012 QPIG00000000.1 Bac0007503 Citromicrobium sp. RCC1897 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Citromicrobium Citromicrobium sp. RCC1897 1812182 LUGI00000000.1 Bac0007504 Enterobacter roggenkampii str. UCICRE 12 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter roggenkampii 1812935 AYID00000000.1 Bac0007505 Rhodococcus sp. EPR-157 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. EPR-157 1813677 LVCV00000000.1 Bac0007506 Phenylobacterium hankyongense str. HKS-05 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium hankyongense 1813876 QFYP00000000.1 Bac0007507 Acidovorax sp. GW101-3H11 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. GW101-3H11 1813946 LUKZ00000000.1 Bac0007508 Nitrosococcus wardiae str. D1FHS Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus wardiae 1814290 NZ_CP038033.1 Bac0007509 Colwellia sp. PAMC 20917 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. PAMC 20917 1816218 NZ_CP014944.1 Bac0007510 Alcanivorax sp. KX64203 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. KX64203 1817793 LVIC00000000.1 Bac0007511 Candidatus Edwardsbacteria bacterium GWF2_54_11 Candidatus Edwardsiibacteriota Candidatus Edwardsbacteria bacterium GWF2_54_11 1817851 MFFM00000000.1 Bac0007512 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 Candidatus Lindowiibacteriota Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 1817870 MFPR00000000.1 Bac0007513 Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 Candidatus Raymondiibacteriota Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 1817890 MFYX00000000.1 Bac0007514 Teichococcus deserti Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Teichococcus deserti 1817963 MLCO00000000.1 Bac0007515 Candidatus Thiodiazotropha endoloripes Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Sedimenticolaceae Candidatus Thiodiazotropha Candidatus Thiodiazotropha endoloripes 1818881 LVJZ00000000.1 Bac0007516 Nodularia spumigena CENA596 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nodulariaceae Nodularia Nodularia spumigena 1819295 LWAJ00000000.1 Bac0007517 Streptomyces sp. PTY087I2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PTY087I2 1819298 LZRD00000000.1 Bac0007518 Marinobacterium aestuarii str. ST58-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinobacterium Marinobacterium aestuarii 1821621 NZ_CP015839.1 Bac0007519 Erythrobacter sp. HI00D59 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. HI00D59 1822215 LWEG00000000.1 Bac0007520 Vibrio sp. HI00D65 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. HI00D65 1822216 LWEH00000000.1 Bac0007521 Oleiphilus sp. HI0009 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oleiphilaceae Oleiphilus Oleiphilus sp. HI0009 1822219 LWEK00000000.1 Bac0007522 Sulfitobacter sp. HI0023 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. HI0023 1822225 LWEQ00000000.1 Bac0007523 Alcanivorax sp. HI0044 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. HI0044 1822234 LWEZ00000000.1 Bac0007524 Oleiphilus sp. HI0065 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oleiphilaceae Oleiphilus Oleiphilus sp. HI0065 1822241 LWFG00000000.1 Bac0007525 Oleibacter sp. HI0075 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Thalassolituus Oleibacter sp. HI0075 1822250 LWFP00000000.1 Bac0007526 Desulfuromonas sp. DDH964 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. DDH964 underground Soudan iron mine 1823759 NZ_CP015080.1 Bac0007527 Rhizobium sp. WYCCWR10014 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. WYCCWR10014 1825933 LXFU00000000.1 Bac0007528 Neorhizobium sp. NCHU2750 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium sp. NCHU2750 1825976 NZ_CP030832.1 Bac0007529 Silicimonas algicola str. DSM 103371 "Silicimonas algicola strain DSM 103371 is a Gram-negative bacterium characterized by its unique star or dumbbell shape and pleomorphic morphology. This microbe exhibits an optimal growth temperature of 25.0°C, indicating a preference for moderate environmental conditions. Additionally, S. algicola is strictly aerobic, necessitating the presence of oxygen for its metabolic processes.↵↵The pleomorphic nature of S. algicola suggests adaptability to varying environmental stresses, which may be advantageous in its ecological niche. Given its optimal growth temperature, this strain is likely to thrive in temperate aquatic environments where conditions are conducive to aerobic life. The Gram-negative cell wall structure may also confer specific resilience to antimicrobial agents, further informing its potential interactions within microbial communities.↵↵The unique morphological characteristics of Silicimonas algicola str. DSM 103371 may play a role in its ecological function, possibly facilitating nutrient acquisition or interaction with other microorganisms. This adaptability and resilience highlight the potential for further research into its ecological roles, particularly in nutrient cycling in aquatic ecosystems. Understanding the specific environmental parameters that influence its growth and interactions may provide insights into the broader ecological dynamics of microbial communities in similar habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Silicimonas Silicimonas algicola Gram-negative star/dumbbell/pleomorphic non-motile aerobic 25 mesophilic 1826607 QGGV00000000.1 Bac0007530 Pedobacter psychrophilus str. CCM 8644 "Pedobacter psychrophilus strain CCM 8644 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 16.0°C. This psychrophilic organism is adapted to cold environments, reflecting its physiological traits that enable survival and metabolic activity at lower temperatures. ↵↵The rod shape of Pedobacter psychrophilus facilitates its mobility and nutrient uptake in cold habitats, which are often nutrient-limited. As an aerobic bacterium, it relies on oxygen for its metabolic processes, which is typical for many bacteria found in cold, oxygen-rich environments, such as polar regions and deep-sea ecosystems. ↵↵Given its optimal growth temperature, Pedobacter psychrophilus may play a critical role in biogeochemical cycles in cold habitats, where it could contribute to the degradation of organic matter and nutrient cycling. Its ability to thrive in low-temperature environments highlights its potential importance in understanding microbial ecology and biotechnological applications in cold environments. Overall, Pedobacter psychrophilus str. CCM 8644 exemplifies the remarkable adaptability of microorganisms to extreme conditions, underscoring the significance of studying psychrophilic bacteria in the context of climate change and ecosystem dynamics." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter psychrophilus Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 1826909 LWHJ00000000.1 Bac0007531 Achromobacter sp. MYb9 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter sp. MYb9 1827284 PCOQ00000000.1 Bac0007532 Bacillus sp. MYb78 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MYb78 1827288 PCOB00000000.1 Bac0007533 Chryseobacterium sp. MYb7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. MYb7 1827290 PCOU00000000.1 Bac0007534 Rheinheimera sp. SA_1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sp. SA_1 1827365 LXWK00000000.1 Bac0007535 Nitrospira sp. SG-bin1 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. SG-bin1 1827376 LVWS00000000.1 Bac0007536 Nitrospira sp. SG-bin2 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. SG-bin2 1827377 LVWT00000000.1 Bac0007537 Proteobacteria bacterium SG_bin6 Pseudomonadati Pseudomonadota Proteobacteria bacterium SG_bin6 1827383 LWDJ00000000.1 Bac0007538 Mesorhizobium sp. YM1C-6-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. YM1C-6-2 1827501 RCIZ00000000.1 Bac0007539 Desulforamulus ferrireducens str. GSS09 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulforamulus Desulforamulus ferrireducens 1833852 NZ_CP019698.1 Bac0007540 Mycobacterium sp. 1081908.1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1081908.1 1834066 LZLY00000000.1 Bac0007541 Mycobacterium sp. 1100029.7 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1100029.7 1834067 LZSC00000000.1 Bac0007542 Mycobacterium sp. 1164985.4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1164985.4 1834069 LZMD00000000.1 Bac0007543 Mycobacterium sp. 1165178.9 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1165178.9 1834070 LZMB00000000.1 Bac0007544 Mycobacterium sp. 1274761.0 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1274761.0 1834077 LZMC00000000.1 Bac0007545 Mycobacteriaceae bacterium 1482268.1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteriaceae bacterium 1482268.1 1834080 LZSH00000000.1 Bac0007546 Mycobacterium sp. 1482292.6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1482292.6 1834081 LZKV00000000.1 Bac0007547 Mycobacterium sp. 1554424.7 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1554424.7 1834082 LZSE00000000.1 Bac0007548 Gordonia sp. 852002-10350_SCH5691597 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. 852002-10350_SCH5691597 1834085 LZMO00000000.1 Bac0007549 Nocardia sp. 852002-20019_SCH5090214 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. 852002-20019_SCH5090214 1834087 LZMK00000000.1 Bac0007550 Mycobacterium sp. 852002-40037_SCH5390672 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-40037_SCH5390672 1834089 LZTA00000000.1 Bac0007551 Gordonia sp. 852002-50816_SCH5313054-a Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. 852002-50816_SCH5313054-a 1834091 LZTD00000000.1 Bac0007552 Mycobacterium sp. 852002-50816_SCH5313054-b Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-50816_SCH5313054-b 1834092 LZIC00000000.1 Bac0007553 Mycobacterium sp. 852002-51152_SCH6134967 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-51152_SCH6134967 1834096 LZIK00000000.1 Bac0007554 Mycobacterium sp. 852002-51163_SCH5372311 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-51163_SCH5372311 1834097 LZIJ00000000.1 Bac0007555 Mycobacterium sp. 852002-51961_SCH5331710 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-51961_SCH5331710 1834105 LZSQ00000000.1 Bac0007556 Mycobacterium sp. 852013-51886_SCH5428379 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852013-51886_SCH5428379 1834111 LZSU00000000.1 Bac0007557 Mycobacterium sp. E136 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E136 1834125 LZJE00000000.1 Bac0007558 Mycobacterium sp. E2327 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E2327 1834132 LZKE00000000.1 Bac0007559 Mycobacterium sp. E2479 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E2479 1834134 LZJR00000000.1 Bac0007560 Mycobacterium sp. E3339 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E3339 1834146 LZIZ00000000.1 Bac0007561 Mycobacterium sp. E342 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E342 1834147 LZJM00000000.1 Bac0007562 Mycobacterium sp. E802 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E802 1834152 LZJD00000000.1 Bac0007563 Corynebacterium sp. EPI-003-04-2554_SCH2473622 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. EPI-003-04-2554_SCH2473622 1834153 LZMN00000000.1 Bac0007564 Kocuria sp. ICS0012 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. ICS0012 1834155 LZMM00000000.1 Bac0007565 Enterococcus sp. 12E11_DIV0728 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 12E11_DIV0728 1834168 NGLY00000000.1 Bac0007566 Enterococcus sp. 2F9_DIV0599 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 2F9_DIV0599 1834172 NGLN00000000.1 Bac0007567 Enterococcus sp. 3H8_DIV0648 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 3H8_DIV0648 1834178 NGLG00000000.1 Bac0007568 Enterococcus sp. 6D12_DIV0197 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 6D12_DIV0197 1834184 NIBN00000000.1 Bac0007569 Enterococcus sp. 7E2_DIV0204 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 7E2_DIV0204 1834188 NGKY00000000.1 Bac0007570 Enterococcus sp. 9D6_DIV0238 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Candidatus Enterococcus dunnyi 1834192 NZ_CP147246.1 Bac0007571 Pseudofrankia sp. EUN1h Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Pseudofrankia Pseudofrankia sp. EUN1h 1834515 MBLN00000000.1 Bac0007572 Saccharothrix sp. CB00851 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix sp. CB00851 1835005 LWLC00000000.1 Bac0007573 Limnohabitans sp. JirII-29 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. JirII-29 1835756 NESB00000000.1 Bac0007574 Limnohabitans sp. MMS-10A-160 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. MMS-10A-160 1835766 NERZ00000000.1 Bac0007575 Maribacter hydrothermalis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter hydrothermalis 1836467 LZFP00000000.1 Bac0007576 Donghicola sp. JL3646 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Donghicola Donghicola sp. JL3646 1836468 LZFQ00000000.1 Bac0007577 Candidatus Thorarchaeota archaeon AB_25 Promethearchaeati Candidatus Thorarchaeota Candidatus Thorarchaeota archaeon AB_25 1837170 MEHG00000000.1 Bac0007578 Enteractinococcus helveticum str. UASWS1574 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Enteractinococcus Enteractinococcus helveticum 1837282 LXEY00000000.1 Bac0007579 Desulfotomaculum copahuensis str. LMa1 Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Desulfotomaculum Desulfotomaculum copahuensis 1838280 LYVF00000000.1 Bac0007580 Lacunisphaera limnophila str. IG16b Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila 1838286 NZ_CP016094.1 Bac0007581 Gammaproteobacteria bacterium 2W06 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium 2W06 1838287 MDVM00000000.2 Bac0007582 Streptomyces sp. TverLS-915 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TverLS-915 1839763 FMCE00000000.1 Bac0007583 Streptomyces sp. IgraMP-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. IgraMP-1 1839767 FMCM00000000.1 Bac0007584 Streptomyces sp. MnatMP-M27 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MnatMP-M27 1839768 FMDJ00000000.1 Bac0007585 Streptomyces sp. Termitarium-T10T-6 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Termitarium-T10T-6 1839775 FMCO00000000.1 Bac0007586 Streptomyces sp. DfronAA-171 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DfronAA-171 1839777 FMCL00000000.1 Bac0007587 Streptomyces sp. MnatMP-M17 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MnatMP-M17 1839780 FMDK00000000.1 Bac0007588 Streptococcus sp. FDAARGOS_192 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. FDAARGOS_192 1839799 NZ_CP020429.2 Bac0007589 Dehalogenimonas formicexedens str. NSZ-14 "Dehalogenimonas formicexedens str. NSZ-14 is a Gram-negative, non-spore-forming spherical bacterium that thrives under strictly anaerobic conditions, with an optimal growth temperature of 32.0°C. This microbe is classified as a chemotroph, indicating that it derives its energy from chemical compounds, rather than through photosynthesis or other processes. ↵↵The spherical morphology of D. formicexedens str. NSZ-14 suggests a capacity for efficient substrate uptake and metabolic versatility, which may be advantageous in its natural habitats. The anaerobic growth requirement implies that this bacterium is likely involved in processes that occur in low-oxygen environments, such as sediments or the gastrointestinal tracts of animals, where it may play a role in the biogeochemical cycling of halogenated compounds.↵↵The specific metabolic pathways utilized by D. formicexedens str. NSZ-14, while not detailed here, likely contribute to its ability to degrade complex organic molecules, including halogenated compounds. This capability positions the bacterium as a potential candidate for bioremediation applications, where anaerobic conditions are prevalent, and the degradation of harmful halogenated pollutants is desired. Thus, understanding the specific metabolic processes of D. formicexedens str. NSZ-14 could reveal insights into its ecological role in anaerobic environments and its potential utility in environmental biotechnologies." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas formicexedens Gram-negative sphere non-motile anaerobic 32 chemotroph mesophilic non-spore-forming 1839801 NZ_CP018258.1 Bac0007590 Aliivibrio sp. 1S175 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio sp. 1S175 1840087 MAJS00000000.1 Bac0007591 Streptomyces sp. F-3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. F-3 1840095 BDDR00000000.1 Bac0007592 Candidatus Arthromitus sp. SFB-turkey Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Candidatus Neoarthromitus Candidatus Arthromitus sp. SFB-turkey 1840217 LXFF00000000.1 Bac0007593 Cycloclasticus sp. symbiont of Poecilosclerida sp. N Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus sp. symbiont of Poecilosclerida sp. N 1840472 LWTM00000000.1 Bac0007594 Candidatus Heimdallarchaeota archaeon LC_3 Promethearchaeati Candidatus Heimdallarchaeota Candidatus Heimdallarchaeota archaeon LC_3 1841598 MDVS00000000.1 Bac0007595 Candidatus Odinarchaeum yellowstonii Promethearchaeati Candidatus Odinarchaeota Candidatus Odinarchaeia Candidatus Odinarchaeales Candidatus Odinarchaeaceae Candidatus Odinarchaeum Candidatus Odinarchaeum yellowstonii 1841599 CP091871.1 Bac0007596 Rhizobium sp. AC27/96 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. AC27/96 1841653 LXKN00000000.1 Bac0007597 Serratia sp. 14-2641 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. 14-2641 1841657 LXKR00000000.1 Bac0007598 Pelobium manganitolerans str. YS-25 "Pelobium manganitolerans strain YS-25 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe and anaerobe characteristics, thriving optimally at a temperature of 29.0°C. This organism's Gram-negative nature suggests the presence of an outer membrane, which may contribute to its adaptability in varying environmental conditions, including both aerobic and anaerobic environments. The rod shape is typical for many bacteria, potentially influencing its motility and nutrient uptake strategies.↵↵The facultative lifestyle of P. manganitolerans str. YS-25 implies that it can switch between aerobic respiration and fermentation, depending on the availability of oxygen. This metabolic versatility may be advantageous in fluctuating ecological niches, allowing it to exploit a range of substrates. ↵↵Given its specific adaptation to a moderate temperature and variable oxygen levels, P. manganitolerans str. YS-25 could play a significant role in biogeochemical cycling, particularly in environments where manganese is prevalent. The ability to tolerate manganese may suggest potential applications in bioremediation or bioleaching processes, where the microbe could contribute to the mobilization of this metal in various ecosystems. Further research into its metabolic pathways and ecological interactions could illuminate more about its role in microbial communities and environmental processes." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pelobium Pelobium manganitolerans Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 1842495 MBTA00000000.1 Bac0007599 Acidovorax sp. RAC01 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. RAC01 1842533 NZ_CP016447.1 Bac0007600 Sinorhizobium sp. RAC02 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. RAC02 1842534 NZ_CP016450.1 Bac0007601 Blastomonas sp. RAC04 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Blastomonadaceae Blastomonas Blastomonas sp. RAC04 1842535 NZ_CP016458.1 Bac0007602 Agrobacterium sp. RAC06 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. RAC06 1842536 NZ_CP016499.1 Bac0007603 Allobosea sp. RAC05 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. RAC05 1842539 NZ_CP016463.1 Bac0007604 Methyloversatilis sp. RAC08 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Methyloversatilis Methyloversatilis sp. RAC08 1842540 NZ_CP016448.1 Bac0007605 Rhodoferax koreense str. DCY110 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax koreensis 1842727 NZ_CP019236.1 Bac0007606 Pseudomonas sp. AU11447 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. AU11447 1843184 LZDG00000000.2 Bac0007607 Sphingobium sp. RAC03 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. RAC03 1843368 NZ_CP016454.1 Bac0007608 Xanthomonas nasturtii str. WHRI 8984 "Xanthomonas nasturtii strain WHRI 8984 is a Gram-negative, rod-shaped bacterium that belongs to the genus Xanthomonas. Characterized by its distinctive morphology and cell wall structure, this strain exhibits the typical features of Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. The rod shape of X. nasturtii str. WHRI 8984 may play a role in its motility and colonization abilities within its environment, which could influence its interactions with plant hosts or other microorganisms.↵↵While the specific ecological role and pathogenic potential of Xanthomonas nasturtii str. WHRI 8984 are not detailed here, bacteria within the Xanthomonas genus are often associated with plant interactions, including both beneficial and detrimental relationships. The presence of this strain in diverse environments suggests it may have adaptations that allow it to thrive in varying conditions, potentially contributing to its ecological fitness. Furthermore, its rod shape may facilitate effective nutrient uptake and environmental adaptation, enhancing its survival in competitive microbial communities. ↵↵Overall, Xanthomonas nasturtii str. WHRI 8984 represents a significant subject for further research, particularly in understanding how its morphological traits influence its ecological roles and interactions within its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas nasturtii Gram-negative rod motile 1843581 QUZM00000000.1 Bac0007609 Dehalobacter sp. TeCB1 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Dehalobacter Dehalobacter sp. TeCB1 1843715 MCHF00000000.1 Bac0007610 Phaeobacter porticola str. P97 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter porticola 1844006 NZ_CP016366.1 Bac0007611 Pseudomonas sp. 24 E 1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 24 E 1 1844094 CVTG00000000.1 Bac0007612 Pseudomonas sp. 37 R 15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 37 R 15 1844104 CVTV00000000.1 Bac0007613 Pseudomonas sp. 58 R 3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 58 R 3 1844108 CVTT00000000.1 Bac0007614 Curvibacter sp. AEP1-3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Curvibacter Curvibacter sp. AEP1-3 1844971 NZ_CP015698.1 Bac0007615 Paenibacillus oryzae str. 1DrF-4 "Paenibacillus oryzae str. 1DrF-4 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its facultative aerobic or anaerobic metabolism. This organism's Gram-positive nature indicates a thick peptidoglycan layer in its cell wall, which is a common feature among members of the Bacilli class. The rod shape is typical of many Bacillus species and may contribute to its motility and ecological adaptability. ↵↵As a spore-forming bacterium, Paenibacillus oryzae str. 1DrF-4 can survive in unfavorable environmental conditions by entering a dormant state, which enhances its resilience and potential for long-term survival in various habitats. The facultative nature of its oxygen requirement allows it to thrive in both aerobic and anaerobic environments, suggesting a versatile metabolic capacity that could enable it to colonize a range of ecological niches.↵↵The ability to adapt to varying oxygen levels may provide insights into its ecological roles, particularly in soil and rhizosphere environments where oxygen availability can fluctuate. This adaptability could be beneficial for interactions with plant roots or other microorganisms, potentially influencing soil health and plant growth. Thus, Paenibacillus oryzae str. 1DrF-4 may play a significant role in nutrient cycling and the maintenance of microbial diversity in its habitat." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus oryzae Gram-positive rod facultative aerobe/anaerobe spore-forming 1844972 LYPA00000000.1 Bac0007616 Methylovorus sp. MM2 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylovorus Methylovorus sp. MM2 1848038 LXUF00000000.1 Bac0007617 Methylobacillus sp. MM3 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylobacillus Methylobacillus sp. MM3 1848039 LXTQ00000000.1 Bac0007618 Ensifer sp. LCM 4579 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. LCM 4579 1848292 MDDV00000000.1 Bac0007619 Nonomuraea deserti Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea deserti 1848322 SMKO00000000.1 Bac0007620 Nonomuraea sp. KC401 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea sp. KC401 1848324 VBUN00000000.1 Bac0007621 Nonomuraea diastatica Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea diastatica 1848329 SMKP00000000.1 Bac0007622 Arthrobacter sp. MYb213 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. MYb213 1848595 PCQA00000000.1 Bac0007623 Arthrobacter sp. MYb227 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. MYb227 1848601 PCPT00000000.1 Bac0007624 Arthrobacter sp. MYb23 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. MYb23 1848603 PCPR00000000.1 Bac0007625 Microbacterium sp. MYb43 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. MYb43 1848688 PCPI00000000.1 Bac0007626 Microbacterium sp. MYb72 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. MYb72 1848693 PCOT00000000.1 Bac0007627 Helicobacter sp. TUL "Helicobacter sp. TUL is a Gram-negative, curved-shaped microbe that falls within the genus Helicobacter. This nonsporulating bacterium thrives in mesophilic conditions, with an optimal growth temperature of 37°C. As a chemoheterotroph, Helicobacter sp. TUL utilizes organic compounds as both its carbon and energy sources, reflecting its adaptability to various environments. The habitat of Helicobacter sp. TUL is quite diverse, having been isolated from multiple ecological niches, which highlights its potential role in different biogeochemical cycles. Its microaerophilic oxygen requirement indicates that it thrives in environments where oxygen levels are lower than those present in the atmosphere, further illustrating its adaptability to unique ecological conditions. Interestingly, this microbe may contribute significantly to the understanding of host-microbe interactions, particularly in the gastrointestinal tract of various animals. Research into Helicobacter sp. TUL can provide insights into how certain species within the Helicobacter genus influence gut health, disease pathology, and even microbial community dynamics. The study of this organism may reveal important implications for both human health and environmental microbiology, emphasizing the intricate relationships between microbes and their hosts in various ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. TUL Negative Curvedshaped Yes 1 Microaerophilic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1848928 NESU00000000.1 Bac0007628 Arthrobacter sp. U41 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. U41 1849032 NZ_CP015734.1 Bac0007629 Harryflintia acetispora str. DSM 100433 "Harryflintia acetispora str. DSM 100433 is a Gram-positive, chemoheterotrophic bacterium that optimally thrives at a temperature of 37.0°C, suggesting an adaptation to warm-blooded hosts. This strain is predominantly found within the intestinal microflora of animals, indicating its potential role in the gut ecosystem where it may contribute to the breakdown of complex organic materials and influence nutrient absorption.↵↵As a member of the animal intestinal microbiota, H. acetispora may play a significant role in maintaining gut health, possibly by participating in fermentation processes or aiding in the metabolism of dietary components. The ability to utilize a variety of organic substrates for energy underscores its ecological versatility and importance in the digestive processes of its host organisms.↵↵Understanding the metabolic capabilities and ecological roles of H. acetispora can provide insights into the complex interactions within the gut microbiome, suggesting that this microbe may be integral to the symbiotic relationships established between gut bacteria and their animal hosts. Its presence in the intestinal environment highlights the intricate balance of microbial communities that support digestive health and overall well-being in animals." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Harryflintia Harryflintia acetispora Positive No 1 37 Chemoheterotroph Animal Intestinal Microflora 1849041 SLUK00000000.1 Bac0007630 Harryflintia acetispora "Harryflintia acetispora is a Gram-positive, chemoheterotrophic bacterium primarily found within the intestinal microflora of animals. While specific details about its shape and cell arrangement remain unspecified, it is essential to note that this bacterium thrives at an optimal temperature of 37°C, aligning closely with the physiological conditions of its host environment. As a member of the gut microbiome, H. acetispora contributes to the complex interplay of microorganisms that inhabit the digestive systems of various animals, playing a crucial role in digestion and nutrient absorption. The ecological significance of H. acetispora is underscored by its interactions with other gut microbes, as it may participate in metabolic processes that influence the overall health of the host. Its chemoheterotrophic metabolism allows it to utilize organic compounds for energy, potentially aiding in the breakdown of complex substrates that are otherwise difficult for the host to digest. Furthermore, the presence of H. acetispora in the intestinal tract indicates a symbiotic relationship with the host, where it may contribute to the maintenance of gut homeostasis and immune function. Understanding the role of H. acetispora within the intestinal ecosystem not only highlights its importance in animal health but also opens avenues for exploring how targeted manipulation of gut microbiota could enhance digestive efficiency and overall well-being in various host species." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Harryflintia Harryflintia acetispora Positive No 1 37 Chemoheterotroph Animal Intestinal Microflora 1849041 QVEO00000000.1 Bac0007631 Marinobacter sp. EhN04 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. EhN04 1849167 LXYN00000000.1 Bac0007632 Sulfitobacter sp. EhC04 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. EhC04 1849168 LXYI00000000.1 Bac0007633 Sphingomonadales bacterium EhC05 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadales bacterium EhC05 1849171 LXYP00000000.1 Bac0007634 Clostridium sp. W14A Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. W14A 1849176 MBSV00000000.1 Bac0007635 Jannaschia sp. EhC01 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Jannaschia Jannaschia sp. EhC01 1849359 LXYJ00000000.1 Bac0007636 Candidatus Altarchaeales archaeon WOR_SM1_79 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon WOR_SM1_79 1849365 MCBD00000000.1 Bac0007637 Streptomyces sp. SAT1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SAT1 1849967 NZ_CP015849.1 Bac0007638 Rhizorhabdus dicambivorans str. Ndbn-20m "Rhizorhabdus dicambivorans str. Ndbn-20m is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This organism exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for mesophilic environments that are conducive to its metabolic activities. As a member of the genus Rhizorhabdus, this strain may be involved in complex ecological interactions, particularly in soil or rhizosphere environments, where aerobic conditions prevail. ↵↵The non-sporulating trait of Rhizorhabdus dicambivorans str. Ndbn-20m indicates that it relies on vegetative growth for propagation rather than forming spores, which can be a critical survival strategy in stable environments. Its Gram-negative cell wall structure is significant as it influences the bacterium's susceptibility to antibiotics and its interaction with other microbial communities.↵↵Overall, the physiological characteristics of Rhizorhabdus dicambivorans str. Ndbn-20m suggest that it may play a role in nutrient cycling and organic matter decomposition in its native habitat, contributing to the overall health and functionality of the ecosystem. Understanding its specific ecological roles could provide insights into the dynamics of microbial communities in aerobic environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Rhizorhabdus Rhizorhabdus dicambivorans Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1850238 NWUF00000000.1 Bac0007639 Rhodobacter xanthinilyticus Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter xanthinilyticus 1850250 NZ_CP017784.1 Bac0007640 Novosphingobium guangzhouense str. SA925 "Novosphingobium guangzhouense strain SA925 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements. This strain exemplifies the diverse metabolic capabilities often observed within the genus Novosphingobium, which is known for its adaptability to various environmental conditions. The rod shape of this microbe, combined with its aerobic nature, suggests a potential role in environments where oxygen is readily available, allowing for efficient respiration and energy generation.↵↵As a member of the Novosphingobium genus, strain SA925 may possess unique biochemical pathways that enable it to thrive in specific ecological niches, potentially contributing to biogeochemical cycles. The aerobic metabolism of Novosphingobium guangzhouense strain SA925 may facilitate its involvement in the degradation of organic compounds, thereby playing a role in bioremediation processes or nutrient cycling in its native habitat. Understanding the ecological functions of such bacteria can provide valuable insights into their potential applications in environmental management and biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium guangzhouense Gram-negative rod aerobic 1850347 LYMM00000000.1 Bac0007641 Streptomyces sp. 11-1-2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 11-1-2 1851167 NZ_CP022545.1 Bac0007642 Actinomyces sp. Chiba101 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. Chiba101 1851395 NZ_AP017896.1 Bac0007643 Scandinavium goeteborgense Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Scandinavium Scandinavium goeteborgense 1851514 NZ_CP054057.1 Bac0007644 Orrella dioscoreae Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Orrella Orrella dioscoreae 1851544 NZ_LT907988.1 Bac0007645 Photorhabdus namnaonensis str. PB45.5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus namnaonensis 1851568 LOIC00000000.1 Bac0007646 Roseitalea porphyridii str. MA7-20 "Roseitalea porphyridii strain MA7-20 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at 32°C and requires aerobic conditions for its metabolic processes. As a member of the microbial community, this organism demonstrates specific adaptations to its environmental niche, which may include its temperature preference and oxygen dependency. ↵↵The Gram-negative nature of Roseitalea porphyridii suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this classification, which may confer certain advantages such as resistance to some antibiotics and the ability to thrive in diverse environments. The rod shape, common among many bacteria, may facilitate motility and nutrient uptake, although specific motility traits have not been provided.↵↵The aerobic requirement indicates that Roseitalea porphyridii engages in oxygen-dependent metabolic pathways, which may influence its ecological interactions and the types of substrates it can utilize in its habitat. Such adaptations highlight the potential role of this microbe in biogeochemical cycles, particularly in environments where oxygen is readily available.↵↵Overall, the traits of Roseitalea porphyridii str. MA7-20 suggest its specialization in aerobic conditions at moderate temperatures, which may enable it to play a significant role in the microbial dynamics of its ecological niche, possibly influencing organic matter decomposition and nutrient cycling in its environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Ahrensiaceae Roseitalea Roseitalea porphyridii Gram-negative rod motile aerobic 32 mesophilic 1852022 NZ_CP036532.1 Bac0007647 Nanoarchaeota archaeon NZ13-N Nanobdellati Nanobdellota Nanoarchaeota archaeon NZ13-N 1852704 MAIT00000000.1 Bac0007648 Pseudomonas silesiensis str. A3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas silesiensis 1853130 NZ_CP014870.1 Bac0007649 Neisseria chenwenguii str. 10023 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria chenwenguii 1853278 NZ_CP022278.1 Bac0007650 Lutibacter oceani str. 325-5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lutibacter Lutibacter oceani 1853311 QTTQ00000000.1 Bac0007651 Halarchaeum sp. CBA1220 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halarchaeum Halarchaeum sp. CBA1220 1853682 NZ_CP054710.1 Bac0007652 Halolamina sp. CBA1230 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halolamina Halolamina sp. CBA1230 1853690 NZ_CP054590.1 Bac0007653 Mesorhizobium sp. AA22 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. AA22 1854057 NZ_CP048406.1 Bac0007654 Pseudonocardia sp. MH-G8 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. MH-G8 1854588 NKYF00000000.1 Bac0007655 Leisingera sp. JC1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera sp. JC1 1855282 LYUZ00000000.1 Bac0007656 Sphingomonas palmae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas palmae 1855283 FNZZ00000000.1 Bac0007657 Allobosea sp. OK403 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. OK403 1855286 FOQV00000000.1 Bac0007658 Duganella sp. CF402 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. CF402 1855289 FOBG00000000.1 Bac0007659 Ensifer sp. YR511 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. YR511 1855294 FNGR00000000.1 Bac0007660 Mucilaginibacter sp. OK098 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp. OK098 1855297 FRCM00000000.1 Bac0007661 Tardiphaga sp. OK246 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Tardiphaga Tardiphaga sp. OK246 1855307 FZOX00000000.1 Bac0007662 Cupriavidus sp. YR651 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. YR651 1855315 FMYZ00000000.1 Bac0007663 Bradyrhizobium sp. Gha Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Gha 1855318 FOQM00000000.1 Bac0007664 Bradyrhizobium sp. Ghvi Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Ghvi 1855319 FOVU00000000.1 Bac0007665 Pseudomonas sp. A214 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. A214 1855331 NZ_LT707062.1 Bac0007666 Nitrosospira sp. Nsp14 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. Nsp14 1855333 FOPV00000000.1 Bac0007667 Nitrosospira sp. Nsp18 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. Nsp18 1855334 FMWY00000000.1 Bac0007668 Nitratireductor aquibiodomus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor aquibiodomus 1855335 FNSL00000000.1 Bac0007669 Nitrosospira sp. Nsp11 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. Nsp11 1855338 FRBV00000000.1 Bac0007670 Pseudobutyrivibrio sp. 49 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. 49 1855344 FNDP00000000.1 Bac0007671 Streptomyces sp. 2231.1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2231.1 1855347 FNTO00000000.1 Bac0007672 Streptomyces sp. 3213.3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 3213.3 1855348 FNTK00000000.1 Bac0007673 Streptomyces sp. PAN_FS17 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PAN_FS17 1855351 FNTN00000000.1 Bac0007674 Lachnospiraceae bacterium KHCPX20 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium KHCPX20 1855375 FNOC00000000.1 Bac0007675 Lachnospiraceae bacterium NLAE-zl-G231 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium NLAE-zl-G231 1855376 FOPX00000000.1 Bac0007676 Faunimonas pinastri Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Afifellaceae Faunimonas Faunimonas pinastri 1855383 FOFG00000000.1 Bac0007677 Porphyromonadaceae bacterium KH3CP3RA Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium KH3CP3RA 1855396 FOSU00000000.1 Bac0007678 Porphyromonadaceae bacterium KH3R12 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium KH3R12 1855397 FNQW00000000.1 Bac0007679 Porphyromonadaceae bacterium NLAE-zl-C104 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium NLAE-zl-C104 1855399 FOZR00000000.1 Bac0007680 Ruminococcaceae bacterium KH2T8 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium KH2T8 1855400 FOIY00000000.1 Bac0007681 Sphingobium sp. EP60837 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. EP60837 1855519 NZ_CP015986.1 Bac0007682 Halorubrum sp. SD612 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. SD612 1855863 NEWI00000000.1 Bac0007683 Luteitalea pratensis str. DSM 100886 "Luteitalea pratensis str. DSM 100886 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and relies on organic compounds as its energy source, categorizing it as an organotrophic chemotroph. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. Notably, Luteitalea pratensis is non-spore-forming, which may influence its survival strategies and adaptability in various habitats.↵↵As an aerobic organism, Luteitalea pratensis str. DSM 100886 likely plays a significant role in the degradation of organic matter in its environment, contributing to nutrient cycling. Its organotrophic capabilities indicate that it may engage in complex interactions with other microorganisms and plant roots, potentially influencing soil health and fertility in its native habitat. The specific ecological interactions and potential applications of this bacterium in biotechnological contexts merit further investigation, particularly regarding its role in organic matter decomposition and nutrient cycling within ecosystems." Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis Gram-negative rod non-motile aerobic 25 organotroph; chemotroph mesophilic non-spore-forming 1855912 NZ_CP015136.1 Bac0007684 Flavobacteriales bacterium 34_180_T64 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriales bacterium 34_180_T64 1856291 MAAR00000000.1 Bac0007685 Alphaproteobacteria bacterium 46_93_T64 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium 46_93_T64 1856292 MAAN00000000.1 Bac0007686 Gammaproteobacteria bacterium 42_54_T18 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium 42_54_T18 1856293 MAAL00000000.1 Bac0007687 Gammaproteobacteria bacterium 50_400_T64 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium 50_400_T64 1856294 MAAS00000000.1 Bac0007688 Osedax symbiont bacterium Rs2_46_30_T18 'Osedax' symbiont bacterium Rs2_46_30_T18 1856298 MABF00000000.1 Bac0007689 Rhodobacterales bacterium 52_120_T64 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium 52_120_T64 1856301 MABA00000000.1 Bac0007690 Marisediminitalea lipolytica Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas lipolytica 1856405 MJIC00000000.1 Bac0007691 Alishewanella sp. HH-ZS Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alishewanella Alishewanella sp. HH-ZS 1856684 LZEJ00000000.1 Bac0007692 Mycobacterium sp. 1423905.2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1423905.2 1856859 LZLE00000000.1 Bac0007693 Mycobacterium sp. 1245852.3 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1245852.3 1856860 LZLL00000000.1 Bac0007694 Mycobacterium sp. 852002-51759_SCH5129042 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-51759_SCH5129042 1856866 LZIG00000000.1 Bac0007695 Macellibacteroides sp. HH-ZS Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Macellibacteroides Macellibacteroides sp. HH-ZS 1857568 LZEK00000000.1 Bac0007696 Streptomyces sp. MP131-18 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MP131-18 1857892 LZNS00000000.1 Bac0007697 Gordonia sp. UCD-TK1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. UCD-TK1 1857893 LZMP00000000.1 Bac0007698 Candidatus Electrothrix aarhusensis Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Candidatus Electrothrix Candidatus Electrothrix aarhusensis 1859131 MTKO00000000.1 Bac0007699 Corynebacterium sp. YIM 101343 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium hylobatis 1859290 RXHJ00000000.1 Bac0007700 Pseudoalteromonas amylolytica Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas amylolytica 1859457 MKJU00000000.1 Bac0007701 Bacteriovorax sp. MedPE-SWde Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. MedPE-SWde 1860085 MPCU00000000.1 Bac0007702 Methanosarcina sp. A14 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. A14 1860098 LZPK00000000.1 Bac0007703 Candidatus Propionivibrio aalborgensis Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Propionivibrio Candidatus Propionivibrio aalborgensis 1860101 FLQY00000000.1 Bac0007704 Halothiobacillus diazotrophicus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Halothiobacillaceae Halothiobacillus Halothiobacillus diazotrophicus 1860122 NZ_CP016027.1 Bac0007705 Erythrobacter sp. QSSC1-22B Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. QSSC1-22B 1860125 LZRP00000000.1 Bac0007706 Methanobrevibacter sp. A54 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. A54 1860156 MAIE00000000.1 Bac0007707 Methanosphaera sp. A6 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. A6 1860157 MAIF00000000.1 Bac0007708 Nostoc cycadae WK-1 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc cycadae 1861711 BDGE00000000.1 Bac0007709 Mesorhizobium sp. SEMIA 3007 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. SEMIA 3007 1862350 MDLH00000000.1 Bac0007710 Sphingopyxis sp. MG Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. MG 1866325 NZ_CP026382.1 Bac0007711 Elizabethkingia occulta Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia occulta 1867263 MAHX00000000.1 Bac0007712 Legionella clemsonensis str. CDC-D5610 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella clemsonensis 1867846 NZ_CP016397.1 Bac0007713 Chromatiales bacterium (ex Bugula neritina AB1) Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiales bacterium (ex Bugula neritina AB1) 1868282 MDLA00000000.1 Bac0007714 Endozoicomonas sp. (ex Bugula neritina AB1) Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Endozoicomonas Endozoicomonas sp. (ex Bugula neritina AB1) 1868284 MDLD00000000.1 Bac0007715 Humibacillus sp. DSM 29435 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Humibacillus Humibacillus sp. DSM 29435 1869167 MAST00000000.1 Bac0007716 Chitinophagaceae bacterium Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophagaceae bacterium 1869212 SEAH00000000.1 Bac0007717 Rheinheimera sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sp. nasal discharge 1869214 DMYW00000000.1 Bac0007718 bacterium bacterium 1869227 NZWF00000000.2 Bac0007719 Pseudomonas aylmerensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aylmerensis 1869229 MAUE00000000.1 Bac0007720 Chryseobacterium sp. CBo1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. CBo1 1869230 MAUH00000000.1 Bac0007721 Desulfovibrio sp. S3730MH75 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. S3730MH75 1869297 MAXI00000000.1 Bac0007722 Erythrobacter sp. SAORIC-644 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. SAORIC-644 1869314 POYF00000000.1 Bac0007723 Polaromonas sp. Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. 1869339 DMKL00000000.1 Bac0007724 Leifsonia sp. Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. 1870902 PABQ00000000.1 Bac0007725 Shinella sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Shinella Shinella sp. Sb-contaminated sites 1870904 QFOR00000000.1 Bac0007726 Flavobacteriaceae bacterium Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium 1871037 NZXE00000000.1 Bac0007727 Chryseobacterium sp. "Chryseobacterium sp. is a Gram-negative bacterium primarily found in aquatic environments and soil. This genus is characterized by its rod-shaped morphology and is part of the broader family of Flavobacteriaceae, which are known for their diverse metabolic capabilities. Chryseobacterium species are often associated with the degradation of organic matter, contributing to nutrient cycling in their habitats.↵↵The aquatic origins of Chryseobacterium sp. suggest an adaptation to life in water, where it may play a role in the microbial communities associated with sediment and surface waters. Its presence in soil further indicates a versatile ecological niche, enabling it to thrive in various environmental conditions. The bacterium’s metabolic versatility may allow it to utilize a range of substrates, which can be pivotal in the breakdown of complex organic materials.↵↵Research into Chryseobacterium sp. has revealed its potential in bioremediation processes, where its enzymatic activities could be harnessed to degrade pollutants in contaminated ecosystems. Understanding its ecological roles and interactions with other microorganisms can provide insights into the dynamics of nutrient cycling and the maintenance of microbial diversity in aquatic and terrestrial environments. Overall, Chryseobacterium sp. exemplifies the intricate relationships within microbial ecosystems and underscores the importance of bacteria in ecological processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. negative aquatic origin; soil 1871047 QFQW00000000.1 Bac0007728 Phenylobacterium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium sp. 1871053 NZKU00000000.1 Bac0007729 Mesorhizobium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. 1871066 SAJC00000000.1 Bac0007730 Phyllobacteriaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacteriaceae bacterium 1871068 PAII00000000.1 Bac0007731 Oxalobacteraceae bacterium Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Oxalobacteraceae bacterium 1871070 DPAB00000000.1 Bac0007732 Comamonadaceae bacterium Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium 1871071 QZKF00000000.1 Bac0007733 Brevundimonas sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. 1871086 NZMA00000000.1 Bac0007734 Acinetobacter defluvii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter defluvii 1871111 NZ_CP029393.2 Bac0007735 Duganella sp. BJB480 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. BJB480 1871181 QVIN00000000.1 Bac0007736 Criibacterium bergeronii "Criibacterium bergeronii is a mesophilic, anaerobic bacterium characterized by its bacilli shape and single-cell arrangement. It thrives optimally at a temperature of approximately 35 degrees Celsius, typical for various microbial inhabitants of the intestinal tract. As a chemoheterotroph, C. bergeronii derives its energy from organic compounds, reflecting its adaptation to the nutrient-rich environment of the host gut. This microbe plays a crucial role in the digestive processes of its host, contributing to the breakdown of complex polysaccharides and aiding in nutrient assimilation. By fermenting carbohydrates and producing short-chain fatty acids (SCFAs), such as acetate and butyrate, C. bergeronii supports the host's metabolic health and maintains gut homeostasis. The production of SCFAs is vital not only for providing energy to colonocytes but also for regulating various physiological functions, including immune responses and gut motility. Ecologically, Criibacterium bergeronii exemplifies the symbiotic relationships that exist within the gut microbiome. Its presence enhances the biodiversity of gut microbial communities, which is essential for overall digestive health and resilience against pathogenic invaders. Understanding the specific functions and interactions of C. bergeronii may offer insights into the development of probiotics or therapeutic strategies aimed at restoring gut health in dysbiotic conditions." Bacillati Bacillota Clostridia Peptostreptococcales Filifactoraceae Criibacterium Criibacterium bergeronii Rod No 1 Anaerobic 35 Chemoheterotroph Mesophilic Host Gut Singles 1871336 MBEW00000000.2 Bac0007737 Acidithiobacillus sp. Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus sp. 1872118 NVVQ00000000.1 Bac0007738 Acidobacterium sp. Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium sp. 1872119 NSIL00000000.1 Bac0007739 Acidovorax sp. "Acidovorax sp. is a Gram-negative bacterium characterized by its ability to thrive in diverse environments, often associated with the degradation of organic compounds. Members of the Acidovorax genus are typically rod-shaped and exhibit motility due to the presence of flagella, which aids in their movement through various substrates. This microbe is known for its metabolic versatility, particularly its capacity to utilize a range of carbon sources, including aromatic compounds, which positions it as a potential player in bioremediation processes.↵↵The physiological traits of Acidovorax sp. suggest it may play a significant role in the cycling of carbon and nitrogen within its ecosystem. Its capability to degrade complex organic materials can contribute to the detoxification of contaminated environments, highlighting its importance in ecological restoration efforts. Additionally, the metabolic pathways employed by Acidovorax sp. could also influence soil and water quality, underscoring its relevance in environmental microbiology.↵↵In summary, Acidovorax sp. exemplifies the intricate relationships between microbial life and environmental health, particularly in its potential to mitigate pollution through biotransformation processes. This underscores the significance of studying such microbes to leverage their abilities in sustainable environmental management." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. negative 1872122 DPDC00000000.1 Bac0007740 Aequorivita sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita sp. 1872390 NYTI00000000.1 Bac0007741 Ahrensia sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Ahrensiaceae Ahrensia Ahrensia sp. 1872419 PAKZ00000000.1 Bac0007742 Alcanivorax sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. 1872427 PAZW00000000.1 Bac0007743 Alistipes sp. Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. 1872444 DPDP00000000.1 Bac0007744 Alloprevotella sp. Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Alloprevotella Alloprevotella sp. 1872471 RBJK00000000.1 Bac0007745 Arcobacter sp. Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. 1872629 NVWN00000000.1 Bac0007746 Pseudoalteromonas fuliginea "Pseudoalteromonas fuliginea is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth under suitable environmental conditions. Pseudoalteromonas fuliginea is part of the Pseudoalteromonas genus, known for its diverse metabolic capabilities and adaptations to marine environments.↵↵The aerobic nature of Pseudoalteromonas fuliginea indicates that it requires oxygen for its growth and energy production, positioning it within ecosystems where oxygen availability is sufficient. The rod shape of the bacterium may confer certain advantages in motility and nutrient uptake within its habitat.↵↵Research on Pseudoalteromonas species has often highlighted their roles in biogeochemical cycles, particularly in marine systems, where they contribute to organic matter decomposition and nutrient cycling. Given the traits of Pseudoalteromonas fuliginea, it may play a significant role in the degradation of organic materials in aerobic marine environments, thus influencing the microbial community structure and function.↵↵Overall, Pseudoalteromonas fuliginea embodies the ecological characteristics prevalent among marine bacteria, showcasing the intricate relationships that exist within microbial communities and their environments. Its aerobic lifestyle and morphological traits may facilitate interactions with other microbial inhabitants, ultimately contributing to the resilience and dynamics of marine ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas fuliginea Gram-negative rod motile aerobic non-spore-forming 1872678 JJNZ00000000.1 Bac0007747 Pseudomonas sp. S3E12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. S3E12 1873126 MBDT00000000.1 Bac0007748 Microbacteriaceae bacterium Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacteriaceae bacterium 1873462 DMKW00000000.1 Bac0007749 Micromonosporaceae bacterium Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonosporaceae bacterium 1873464 DPJL00000000.1 Bac0007750 Xenorhabdus eapokensis str. DL20 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus eapokensis 1873482 MKGQ00000000.1 Bac0007751 Xenorhabdus thuongxuanensis str. 30TX1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus thuongxuanensis 1873484 MKGR00000000.1 Bac0007752 Halodesulfurarchaeum formicicum str. HTSR1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum formicicum 1873524 NZ_CP016070.1 Bac0007753 Ensifer sp. LC14 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. LC14 1873714 MBSQ00000000.1 Bac0007754 Ensifer sp. LC54 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. LC54 1873715 MBSR00000000.1 Bac0007755 Cupriavidus sp. "Cupriavidus sp. is a Gram-negative bacterium characterized by its aerobic metabolism, which allows it to thrive in oxygen-rich environments. This microbe is commonly found in diverse aquatic habitats, including drinking water sources and the sediment of hot springs. The presence of Cupriavidus sp. in such varied environments suggests a remarkable adaptability to different water conditions, potentially influencing local microbiomes. ↵↵The aerobic nature of Cupriavidus sp. indicates its reliance on oxygen for respiration, a trait that may confer advantages in environments where oxygen is abundant. Its isolation from hot spring sediments points to its ability to withstand elevated temperatures, which can be a critical factor in its survival and proliferation in such extreme habitats. ↵↵Furthermore, the occurrence of Cupriavidus sp. in drinking water highlights its potential role in water systems, possibly contributing to the biogeochemical cycling of nutrients or interacting with other microbial communities. This adaptability and versatility suggest that Cupriavidus sp. might play a significant role in maintaining ecological balance in aquatic environments, as well as indicating its potential utility in bioremediation or biotechnology applications, where its metabolic capabilities could be harnessed for environmental management." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. negative aerobic drinking water; sediment of hot springs; water 1873897 PCBC00000000.1 Bac0007756 Sphingopyxis sp. EG6 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. EG6 1874061 NZ_AP017604.1 Bac0007757 Sphingobacterium alkalisoli str. Y3L14 "Sphingobacterium alkalisoli strain Y3L14 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is classified as a non-spore-forming organism. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderately warm environments. The Gram-negative classification indicates that the bacterium possesses a distinct outer membrane, contributing to its structural integrity and interaction with the surrounding environment.↵↵As a member of the genus Sphingobacterium, this strain is likely involved in various biochemical processes, particularly in the degradation of complex organic materials, although specific metabolic capabilities have not been detailed. The aerobic nature of S. alkalisoli Y3L14 implies that it relies on oxygen for its growth and energy production, which may influence its ecological niches, such as soil or water environments rich in organic substrates.↵↵The optimal growth temperature of 29.0°C positions S. alkalisoli Y3L14 within a range favorable for a variety of environmental and biotechnological applications. Its ability to thrive in aerobic conditions may make it a candidate for studies related to bioremediation or microbial community dynamics in alkaline soils, where interactions with other microorganisms could enhance nutrient cycling and organic matter breakdown. Thus, the traits of Sphingobacterium alkalisoli Y3L14 highlight its potential role in nutrient recycling processes in alkaline ecosystems." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium alkalisoli Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1874115 SUKA00000000.1 Bac0007758 Idiomarina sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina sp. 1874361 NZQS00000000.1 Bac0007759 Clavibacter capsici "Clavibacter capsici is a Gram-positive bacterium that exhibits an aerobic metabolism, indicating its requirement for oxygen for growth and survival. This microbe is characterized by its rod-shaped morphology, which is typical of many members within its genus. Clavibacter capsici is primarily found in agricultural environments, where it is associated with various plant substrates. The organism's aerobic nature suggests that it thrives in well-oxygenated soils or plant tissues, contributing to its ecological niche. ↵↵The Gram-positive nature of Clavibacter capsici signifies a thick peptidoglycan layer in its cell wall, which can influence its susceptibility to certain antibiotics and its interactions with other microorganisms in its environment. This structural feature also plays a role in its ability to form biofilms, potentially aiding in its persistence in agricultural settings. ↵↵Understanding the aerobic requirements of Clavibacter capsici allows for a clearer insight into its ecological role, particularly in the rhizosphere where oxygen levels can fluctuate. Its adaptation to aerobic conditions may enhance its competitiveness against other microbial species in soil, suggesting a unique ecological strategy that could impact soil health and plant-microbe interactions. Further research into this organism could illuminate its potential roles in agricultural ecosystems, particularly in relation to plant health and soil microbiome dynamics." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter capsici Gram-positive aerobic 1874630 NZ_CP012574.1 Bac0007760 Acinetobacter sp. FDAARGOS_131 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. FDAARGOS_131 1876769 LORV00000000.2 Bac0007761 Candidatus Altarchaeales archaeon IMC4 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon IMC4 1878999 MCBF00000000.1 Bac0007762 Bacillota bacterium Bacillati Bacillota Bacillota bacterium 1879010 QGUT00000000.2 Bac0007763 Acinetobacter sp. WCHAc010034 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WCHAc010034 1879049 NZ_CP032279.1 Bac0007764 Acinetobacter wuhouensis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter wuhouensis 1879050 NZ_CP031716.1 Bac0007765 Shewanella sp. 10N.286.51.B7 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. 10N.286.51.B7 1880836 MCUF00000000.1 Bac0007766 Vibrio sp. 10N.222.52.B12 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.222.52.B12 1880840 MDAW00000000.1 Bac0007767 Vibrio sp. 10N.261.49.E11 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.261.49.E11 1880848 MCYT00000000.1 Bac0007768 Vibrio sp. 10N.261.52.A1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.261.52.A1 1880849 MCYD00000000.1 Bac0007769 Vibrio sp. 10N.286.49.B3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.286.49.B3 1880855 MCUV00000000.1 Bac0007770 Vibrio sp. 10N.286.49.C2 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.286.49.C2 1880856 MCUT00000000.1 Bac0007771 Crenothrix sp. D3 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Crenotrichaceae Crenothrix Crenothrix sp. D3 1880899 MBQZ00000000.1 Bac0007772 Limnothrix sp. P13C2 Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Limnothrix Limnothrix sp. P13C2 1880902 MBRF00000000.1 Bac0007773 Achromobacter sp. MFA1 R4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter sp. MFA1 R4 1881016 NZ_LT707065.1 Bac0007774 Streptomyces sp. TLI_105 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TLI_105 1881019 FNSM00000000.1 Bac0007775 Streptomyces sp. 2314.4 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2314.4 1881025 FNSJ00000000.1 Bac0007776 Devosia sp. YR412 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. YR412 1881030 FOFL00000000.1 Bac0007777 Agromyces sp. CF514 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces sp. CF514 1881031 FOZD00000000.1 Bac0007778 Mitsuaria sp. PDC51 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Mitsuaria sp. PDC51 1881035 FOZE00000000.1 Bac0007779 Rhodanobacter sp. OK091 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. OK091 1881037 FRCH00000000.1 Bac0007780 Chitinophaga sp. YR573 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga sp. YR573 1881040 FOJF00000000.1 Bac0007781 Mucilaginibacter sp. OK283 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp. OK283 1881049 FODR00000000.1 Bac0007782 Nitrosomonas sp. Nm132 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Nm132 1881053 FNDH00000000.1 Bac0007783 Nitrosomonas sp. Nm166 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Nm166 1881054 FONE00000000.1 Bac0007784 Nitrosomonas sp. Nm34 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Nm34 1881055 FORD00000000.1 Bac0007785 Loktanella sp. DSM 29012 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Loktanella Loktanella sp. DSM 29012 1881056 FOEJ00000000.1 Bac0007786 Agrobacterium fabrum "Agrobacterium fabrum is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an aerobe, requiring oxygen for its metabolic processes. This microbe is known to inhabit a variety of environments, which suggests a versatile ecological adaptability. ↵↵As a member of the Agrobacterium genus, A. fabrum is particularly noted for its role in plant-associated interactions, where it can transfer genetic material to host plants, a mechanism facilitated by its unique plasmids. The ability to thrive in diverse habitats may contribute to its ecological significance in both natural and agricultural settings, particularly in relation to plant development and transformation processes.↵↵The ecological versatility of A. fabrum highlights its potential role in symbiotic relationships within various ecosystems, including soil and plant environments, where it may influence plant health and growth. Understanding the adaptive strategies of A. fabrum in different habitats can provide insights into its interactions with plant hosts and its potential applications in biotechnology and sustainable agriculture." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium fabrum Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1881064 FNEW00000000.1 Bac0007787 Bacillus sp. OV194 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. OV194 1881065 FOML00000000.1 Bac0007788 Sphingomonas sp. OK281 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. OK281 1881067 FOVZ00000000.1 Bac0007789 Sphingomonas sp. OV641 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. OV641 1881068 FNZB00000000.1 Bac0007790 Geodermatophilus sp. DSM 45219 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus sp. DSM 45219 1881103 FNIQ00000000.1 Bac0007791 Pantoea sesami Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sesami 1881110 FQWJ00000000.1 Bac0007792 Nesterenkonia sp. PF2B19 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia sp. PF2B19 microaerophile 1881858 MDSS00000000.2 Bac0007793 Pseudomonas sp. K35 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. K35 1882381 MCAL00000000.1 Bac0007794 Methanosarcina sp. Ant1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. Ant1 1882735 MDTP00000000.2 Bac0007795 Afipia sp. GAS231 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia sp. GAS231 1882747 NZ_LT629703.1 Bac0007796 Beijerinckia sp. 28-YEA-48 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Beijerinckiaceae Beijerinckia Beijerinckia sp. 28-YEA-48 1882748 FNSI00000000.1 Bac0007797 Paenibacillus sp. GP183 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. GP183 1882751 FNSW00000000.1 Bac0007798 Pseudomonas sp. PDC86 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PDC86 1882759 FNPO00000000.1 Bac0007799 Arthrobacter sp. OV608 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. OV608 1882768 FOEZ00000000.1 Bac0007800 Burkholderia sp. CF145 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. CF145 1882792 NPKA00000000.1 Bac0007801 Burkholderia sp. OK233 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. OK233 1882795 OCSR00000000.1 Bac0007802 Brevibacillus sp. "Brevibacillus sp. is a rod-shaped, gram-positive bacterium characterized by its ability to thrive in various environments. This genus is noted for its robust physiological traits, allowing it to adapt to diverse ecological niches. Members of the Brevibacillus genus are typically aerobic or facultatively anaerobic, indicating their capability to grow in the presence or absence of oxygen.↵↵The morphology of Brevibacillus sp. is primarily defined by its elongated rod shape, which can be a crucial factor in its motility and nutrient acquisition strategies. This shape may also influence the bacterium's interactions with its environment, including its ability to form biofilms or adhere to surfaces, which is significant in both natural and industrial contexts.↵↵In addition to their structural characteristics, Brevibacillus species are often associated with soil and plant environments, where they may contribute to nutrient cycling and soil health. Their biochemical versatility allows them to participate in various metabolic processes, which can include the degradation of organic materials and the production of enzymes that may be beneficial in agricultural applications.↵↵Overall, Brevibacillus sp. exemplifies the adaptability of bacteria to their surroundings, showcasing a potential role in promoting soil fertility and supporting plant growth through complex interactions within microbial communities. Further research into their metabolic capabilities could uncover additional ecological functions that reinforce their significance in environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus sp. Rod 1882945 QEWG00000000.1 Bac0007803 Mesohalobacter halotolerans Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mesohalobacter Mesohalobacter halotolerans 1883405 SWMU00000000.1 Bac0007804 Pseudomonas sp. BDAL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. BDAL1 1884210 MCRW00000000.1 Bac0007805 Selenomonas sp. oral taxon 920 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 920 1884263 NZ_CP017042.1 Bac0007806 Rhizobiales bacterium GAS188 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium GAS188 1884351 FNSS00000000.1 Bac0007807 Cycloclasticus pugetii Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus pugetii 1884353 FQZJ00000000.1 Bac0007808 Novosphingobium sp. CF614 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. CF614 1884364 FOOR00000000.1 Bac0007809 Duganella sp. CF458 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. CF458 1884368 FOOF00000000.1 Bac0007810 Paenibacillus sp. OK003 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. OK003 1884380 FOBD00000000.1 Bac0007811 Variovorax sp. YR752 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. YR752 1884383 OCMW00000000.1 Bac0007812 Vibrio sp. 10N.222.55.F9 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.222.55.F9 1884471 MDAM00000000.1 Bac0007813 Vibrio sp. 10N.261.52.E5 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.261.52.E5 1884473 MCXT00000000.1 Bac0007814 Porphyromonas loveana str. DSM 28520 "Porphyromonas loveana strain DSM 28520 is a Gram-negative, rod-shaped bacterium that exhibits strict anaerobic growth, meaning it thrives in environments devoid of oxygen. This microbe is classified as non-spore-forming, indicating that it does not produce spores as a means of survival under unfavorable conditions. Its anaerobic nature suggests a potential ecological role in environments such as the human oral cavity or the gastrointestinal tract, where oxygen is limited and anaerobic microorganisms often dominate.↵↵The rod-shaped morphology of P. loveana str. DSM 28520 aligns it with other members of the Porphyromonas genus, which is known for its involvement in various ecological niches, typically associated with complex microbial communities. These traits indicate that P. loveana may contribute to the metabolic processes within anaerobic environments, potentially participating in the degradation of organic matter and influencing the microbial dynamics of its habitat. Understanding the growth requirements and physiological traits of this strain can provide insights into its ecological roles and interactions within anaerobic ecosystems, highlighting its importance in maintaining microbial diversity and function." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas loveana Gram-negative rod non-motile anaerobic non-spore-forming 1884669 QEKY00000000.1 Bac0007815 Euhalothece sp. KZN 001 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Halothecacae Euhalothece Euhalothece sp. KZN 001 1884791 MDVL00000000.1 Bac0007816 Candidatus Planktophila sulfonica Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae Candidatus Planktophila Candidatus Planktophila sulfonica 1884904 NZ_CP016773.1 Bac0007817 Candidatus Planktophila vernalis Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae Candidatus Planktophila Candidatus Planktophila vernalis 1884907 NZ_CP016776.1 Bac0007818 Candidatus Planktophila dulcis Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae Candidatus Planktophila Candidatus Planktophila dulcis 1884914 NZ_CP016772.1 Bac0007819 Rothia sp. Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. (in: high G+C Gram-positive bacteria) 1885016 DPZD00000000.1 Bac0007820 Pseudonocardia sp. Ae356_Ps1 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. Ae356_Ps1 1885032 MCIN00000000.1 Bac0007821 Pseudonocardia sp. Ae707_Ps1 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. Ae707_Ps1 1885572 MCIR00000000.1 Bac0007822 Xanthomonas cannabis pv. cannabis str. NCPPB 2877 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas cannabis 1885894 JSZE00000000.1 Bac0007823 Mucilaginibacter sp. PPCGB 2223 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp. PPCGB 2223 1886027 MDJS00000000.1 Bac0007824 Paenibacillus nuruki str. TI45-13ar Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus nuruki 1886670 MDER00000000.1 Bac0007825 Sphingomonas olei "Sphingomonas olei is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is non-spore-forming, which suggests that it relies on other mechanisms for survival and propagation in its ecological niche. ↵↵Sphingomonas species are known for their unique metabolic capabilities, particularly in the degradation of complex organic compounds, including those found in oil and other hydrocarbons. This trait may suggest a potential role for Sphingomonas olei in bioremediation processes, particularly in environments contaminated with petroleum products. The organism's aerobic nature indicates that it may be involved in the breakdown of pollutants in oxygen-rich environments, contributing to the detoxification of such compounds.↵↵The ability of Sphingomonas olei to thrive at moderate temperatures and its specific metabolic pathways may render it an important player in nutrient cycling and organic matter decomposition within its habitat. Further studies could elucidate its ecological contributions and potential applications in environmental microbiology, particularly concerning its interactions with other microbial communities and its role in ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas olei Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1886787 SSTI00000000.1 Bac0007826 Enterobacter sp. ku-bf2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. ku-bf2 1888167 MDVW00000000.1 Bac0007827 Maribacter sp. 4G9 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter sp. 4G9 1889777 MDGL00000000.1 Bac0007828 Paramylibacter kogurei Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paramylibacter Paramylibacter kogurei 1889778 MDGM00000000.1 Bac0007829 Roseivirga sp. 4D4 Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga sp. 4D4 1889784 MDGP00000000.1 Bac0007830 Proteiniborus sp. DW1 Bacillati Bacillota Clostridia Eubacteriales Proteiniborus Proteiniborus sp. DW1 1889883 FMDO00000000.1 Bac0007831 Bacillus wiedmannii str. BAG6X1-1 "Bacillus wiedmannii strain BAG6X1-1 is a Gram-positive, rod-shaped bacterium that typically forms chains. This organism thrives optimally at a temperature of 25.0°C and is classified as an aerobic bacterium, requiring oxygen for its metabolic processes. The ability to grow in multiple habitats suggests a level of ecological versatility, allowing it to adapt to various environmental conditions.↵↵The chain-like arrangement of cells in Bacillus wiedmannii str. BAG6X1-1 may confer certain advantages, such as enhanced surface area for nutrient absorption or improved resistance to adverse conditions, which are characteristics often seen in filamentous bacterial forms. Given its optimal growth temperature, this strain may be particularly well-suited to temperate environments where such conditions prevail.↵↵Further exploration of its habitat diversity could provide insights into its ecological role and potential applications in biotechnology or environmental microbiology. The adaptability of Bacillus wiedmannii str. BAG6X1-1 to different environments underscores the importance of studying microbial diversity, particularly in understanding how such organisms interact within their ecosystems and contribute to nutrient cycling and other ecological processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 AHDO00000000.1 Bac0007832 Bacillus wiedmannii str. MM3 "Bacillus wiedmannii str. MM3 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This organism exhibits optimal growth at a temperature of 25.0°C, suggesting it may be well-suited for moderate environmental conditions. ↵↵Bacillus species are often found in diverse habitats, and the ability of B. wiedmannii str. MM3 to inhabit multiple environments indicates its potential versatility and adaptability. The aerobic nature of this bacterium implies that it relies on oxygen for its metabolic processes, which may influence its ecological interactions and nutrient cycling within its habitat.↵↵Understanding the physiological traits of Bacillus wiedmannii str. MM3 contributes to the broader knowledge of the Bacillus genus, particularly regarding its ecological roles and potential applications in biotechnology or environmental remediation. The presence of this microbe in varied habitats suggests it may play a significant role in the decomposition of organic matter, thus contributing to nutrient availability in its ecosystem." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NZ_CM000718.1 Bac0007833 Pandoraea fibrosis str. 7641 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea fibrosis 1891094 NZ_CP047386.1 Bac0007834 Pseudomonadales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadales bacterium 1891229 PAYQ00000000.1 Bac0007835 Burkholderiales bacterium "Burkholderiales bacterium is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperature ranges, exhibiting heterotrophic behavior and classified as a facultative anaerobe. This diverse group of bacteria occurs in various environments, often found in soil, water, and on plant surfaces, as well as in the human and animal microbiomes. The Gram-negative characteristic of Burkholderiales bacterium indicates a thinner peptidoglycan layer in its cell wall, making it less resistant to certain antibiotics compared to Gram-positive bacteria. This structural configuration contributes to its adaptability in various habitats. As a rod-shaped organism, it often displays a variety of forms, including single cells, pairs, or clusters, influencing its metabolic activities, spore formation, and interactions with other microbes and host organisms. Being heterotrophic, Burkholderiales bacterium obtains its energy by metabolizing organic compounds, allowing it to thrive in nutrient-rich environments. Its facultative anaerobic nature enables it to survive in both oxygen-rich and low-oxygen conditions, showcasing remarkable metabolic versatility and adaptability. This flexibility is advantageous when competing for resources or colonizing diverse ecological niches. In addition to its ecological roles, Burkholderiales bacterium has significant implications in biotechnology and medicine. Some species are known for their ability to degrade pollutants, making them valuable in bioremediation efforts. Conversely, certain members can act as opportunistic pathogens, particularly in immunocompromised individuals, necessitating an understanding of their pathogenic potential. Overall, the Burkholderiales bacterium exemplifies the complexity and adaptability of microbial life, highlighting its dual role in ecological balance and public health. Its varied habitats and metabolic capabilities underscore its importance in both natural ecosystems and clinical contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium Negative Yes 1 Anaerobe Biotroph Mesophilic Host gut Nonsporulating 1891238 QUKP00000000.1 Bac0007836 Betaproteobacteria bacterium Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium 1891241 PQAI00000000.1 Bac0007837 Sulfolobus sp. A20 Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus sp. A20 1891280 NZ_CP017006.1 Bac0007838 Sporanaerobacter sp. PP17-6a Bacillati Bacillota Tissierellia Tissierellales Sporanaerobacteraceae Sporanaerobacter Sporanaerobacter sp. PP17-6a 1891289 FMIF00000000.1 Bac0007839 Pantoea alhagi str. LTYR-11Z Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea alhagi 1891675 NZ_CP019706.1 Bac0007840 Streptococcus oralis subsp. oralis "Streptococcus oralis subsp. oralis is a Gram-positive bacterium characterized by its cocci shape, typically occurring in pairs or chains. This subspecies is recognized as a host-associated microbe, indicating a specific relationship with its host environment. As a facultative anaerobe, S. oralis subsp. oralis possesses the metabolic flexibility to thrive in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within the host's oral cavity and other associated habitats.↵↵The presence of S. oralis subsp. oralis is particularly notable in the human oral microbiome, where it may contribute to the complex microbial community that plays a role in maintaining oral health. Its ability to inhabit diverse niches within the host suggests potential interactions with other microbial species and host tissues, which could influence local homeostasis and microbial dynamics. Understanding the ecological role of S. oralis subsp. oralis within the oral environment may provide insights into how commensal bacteria contribute to oral health and disease states, highlighting the importance of this subspecies in the context of human microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1891914 NCUN00000000.1 Bac0007841 Fuerstiella marisgermanici str. NH11 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Fuerstiella Fuerstiella marisgermanici 1891926 NZ_CP017641.1 Bac0007842 Acinetobacter sp. AR2-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. AR2-3 1891969 MJIQ00000000.1 Bac0007843 Actinobacteria bacterium 69-20 Bacillati Actinomycetota Actinomycetes Actinobacteria bacterium 69-20 1895696 MKSW00000000.1 Bac0007844 Bacteroidales bacterium 36-12 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium 36-12 1895718 MKSZ00000000.1 Bac0007845 Bacteroidia bacterium 44-10 Pseudomonadati Bacteroidota Bacteroidia Bacteroidia bacterium 44-10 1895721 MKTE00000000.1 Bac0007846 Burkholderiales bacterium 66-26 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium 66-26 1895727 MKUR00000000.1 Bac0007847 Burkholderiales bacterium 68-20 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium 68-20 1895732 MKUT00000000.1 Bac0007848 Caedibacter sp. 37-49 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Fastidiosibacteraceae Caedibacter Caedibacter sp. 37-49 1895735 MKUV00000000.1 Bac0007849 Chlamydiales bacterium 38-26 Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiales bacterium 38-26 1895743 MKSK00000000.1 Bac0007850 Flavobacteriia bacterium 40-80 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriia bacterium 40-80 1895763 MKVF00000000.1 Bac0007851 Hydrogenophaga sp. 70-12 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. 70-12 1895769 MKSS00000000.1 Bac0007852 Magnetospirillum sp. 64-120 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum sp. 64-120 1895778 MKVK00000000.1 Bac0007853 Mesorhizobium sp. 65-26 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. 65-26 1895781 MKVL00000000.1 Bac0007854 Micrococcales bacterium 72-143 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcales bacterium 72-143 1895790 MKVM00000000.1 Bac0007855 Myxococcales bacterium 68-20 Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcales bacterium 68-20 1895795 MKVQ00000000.1 Bac0007856 Pseudonocardia sp. 73-21 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. 73-21 1895809 MKVV00000000.1 Bac0007857 Rhizobiales bacterium 63-22 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium 63-22 1895812 MKVZ00000000.1 Bac0007858 Rhodanobacter sp. 67-28 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. 67-28 1895822 MKTU00000000.1 Bac0007859 Rhodanobacter sp. 68-29 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. 68-29 1895823 MKWC00000000.1 Bac0007860 Rhodospirillales bacterium 69-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillales bacterium 69-11 1895825 MKTV00000000.1 Bac0007861 Rhodospirillales bacterium 70-18 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillales bacterium 70-18 1895826 MKWE00000000.1 Bac0007862 Sphingobacteriales bacterium 39-19 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriales bacterium 39-19 1895834 MKTX00000000.1 Bac0007863 Sphingobacteriales bacterium 48-107 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriales bacterium 48-107 1895840 MKUA00000000.1 Bac0007864 Sphingobium sp. 66-54 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. 66-54 1895845 MKWI00000000.1 Bac0007865 Stenotrophomonas sp. 69-14 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. 69-14 1895856 MKWK00000000.1 Bac0007866 Thiobacillus sp. 63-78 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus sp. 63-78 1895859 MKWM00000000.1 Bac0007867 Thiobacillus sp. 65-1059 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus sp. 65-1059 1895860 MKUE00000000.1 Bac0007868 Thiobacillus sp. 65-29 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus sp. 65-29 1895862 MKWN00000000.1 Bac0007869 Lysobacterales bacterium 63-13 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacterales bacterium 63-13 1895867 MKWR00000000.1 Bac0007870 Lysobacterales bacterium 66-474 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacterales bacterium 66-474 1895868 MKWP00000000.1 Bac0007871 Lysobacterales bacterium 69-70 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacterales bacterium 69-70 1895869 MKWQ00000000.1 Bac0007872 Chryseobacterium sp. 36-9 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. 36-9 1895905 MKVE00000000.1 Bac0007873 Bacteroidetes bacterium 43-93 Pseudomonadati Bacteroidota Bacteroidetes bacterium 43-93 1895924 MKUO00000000.1 Bac0007874 Bacteroidetes bacterium 46-16 Pseudomonadati Bacteroidota Bacteroidetes bacterium 46-16 1895925 MKUN00000000.1 Bac0007875 Bacteroidetes bacterium 47-18 Pseudomonadati Bacteroidota Bacteroidetes bacterium 47-18 1895926 MKSF00000000.1 Bac0007876 Chloroflexi bacterium 54-19 Bacillati Chloroflexota Chloroflexia Candidatus Chloroheliales Chloroflexi bacterium 54-19 1895928 MKTJ00000000.1 Bac0007877 Fibrobacter sp. UWH4 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWH4 1896210 FRAY00000000.1 Bac0007878 Fibrobacter sp. UWH6 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWH6 1896212 FRAX00000000.1 Bac0007879 Fibrobacter sp. UWP2 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWP2 1896216 FQYM00000000.1 Bac0007880 Fibrobacter sp. UWS1 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWS1 1896220 NSGW00000000.1 Bac0007881 Hallerella succinigenes Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Hallerella Hallerella succinigenes 1896222 PGEX00000000.1 Bac0007882 Amycolatopsis sp. AA4 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. AA4 1896961 NZ_CP024896.1 Bac0007883 Clostridium sp. 44_14 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. 44_14 1896984 MNRV00000000.1 Bac0007884 Clostridium sp. CAG:12237_41 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:12237_41 1896985 MNRX00000000.1 Bac0007885 Clostridium sp. CAG:62_40_43 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:62_40_43 1896990 MNSA00000000.1 Bac0007886 Coprobacillus sp. CAG:235_29_27 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. CAG:235_29_27 1896995 MNSC00000000.1 Bac0007887 Eubacterium sp. 36_13 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. 36_13 1897001 MNSH00000000.1 Bac0007888 Eubacterium sp. 38_16 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. 38_16 1897002 MNSI00000000.1 Bac0007889 Eubacterium sp. 41_20 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. 41_20 1897003 MNSJ00000000.1 Bac0007890 Ruminococcus sp. 37_24 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. 37_24 1897019 MNTP00000000.1 Bac0007891 Firmicutes bacterium CAG:129_59_24 Bacillati Bacillota Firmicutes bacterium CAG:129_59_24 1897028 MNSV00000000.1 Bac0007892 Firmicutes bacterium CAG:65_45_313 Bacillati Bacillota Firmicutes bacterium CAG:65_45_313 1897036 MNTD00000000.1 Bac0007893 Marinobacter sp. X15-166B Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. X15-166B 1897620 MEIY00000000.1 Bac0007894 Motiliproteus sp. MSK22-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Motiliproteus Motiliproteus sp. MSK22-1 1897630 MIEQ00000000.1 Bac0007895 Tersicoccus sp. Bi-70 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Tersicoccus Tersicoccus sp. Bi-70 1897634 MIEU00000000.1 Bac0007896 Shigella sp. FC1655 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sp. FC1655 1898038 MIIW00000000.1 Bac0007897 Rhodocyclaceae bacterium Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Rhodocyclaceae bacterium 1898103 RXJY00000000.1 Bac0007898 Bacteroidota bacterium Pseudomonadati Bacteroidota Bacteroidota bacterium 1898104 PDRJ00000000.1 Bac0007899 Bacteroidetes bacterium Pseudomonadati Bacteroidota Bacteroidota bacterium 1898104 QMPO00000000.1 Bac0007900 Cryomorphaceae bacterium Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Cryomorphaceae Cryomorphaceae bacterium 1898111 DMCR00000000.1 Bac0007901 Rhodospirillaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillaceae bacterium 1898112 NZVJ00000000.1 Bac0007902 Idiomarinaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarinaceae bacterium 1898113 PBKV00000000.1 Bac0007903 Lachnospiraceae bacterium str. KA00044 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 1898203 NBBL00000000.1 Bac0007904 Lachnospiraceae bacterium "Lachnospiraceae bacterium is a Gram-negative, rod-shaped microbe that thrives in a mesophilic temperature range, making it well-suited for growth at moderate temperatures. This organism is classified as a chemoheterotroph, deriving its energy and carbon from organic compounds. It primarily resides in the human gut, where it plays a vital role in the fermentation of dietary fibers, and can also be found in various body sites including the oral cavity, fecal matter, and the urogenital tract of some mammals. As a member of the family Lachnospiraceae, this bacterium contributes to the complex microbiota that promotes overall health by aiding in the digestion of complex carbohydrates. Its Gram-negative cell wall structure features a thin peptidoglycan layer surrounded by an outer membrane, which is distinctive of this classification. The rod shape is significant for its mobility and adaptability within the gastrointestinal environment, allowing it to colonize effectively and interact with other microbial communities. Lachnospiraceae bacterium is classed as an obligate anaerobe, meaning it thrives in environments devoid of oxygen. This characteristic is crucial for its metabolic processes, as oxygen can be toxic to its survival. The ability to ferment carbohydrates leads to the production of short-chain fatty acids, which are beneficial for gut health and may influence systemic inflammation. The ecological significance of Lachnospiraceae bacterium is underscored by its involvement in the gut-brain axis and potential implications in metabolic health, including obesity and diabetes. Emerging research suggests that variations in the abundance of this microbe might correlate with certain health conditions, highlighting its role in maintaining a balanced gut microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Petralouisia Petralouisia muris No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 1898203 SRYA00000000.1 Bac0007905 Clostridiaceae bacterium "Currently, very little is known about the microbe 'Clostridiaceae bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium 1898204 QAMO00000000.1 Bac0007906 Spirochaetaceae bacterium Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaetaceae bacterium 1898206 PCBI00000000.1 Bac0007907 Clostridiales bacterium "Clostridiales bacterium is a key player in the process of reductive dehalogenation, functioning as a chemoheterotroph that utilizes organic compounds as its primary energy source. This bacterium thrives under anaerobic conditions, meaning it does not require oxygen for its metabolic processes. Members of the Clostridiales order, which includes various other species known for their ecological roles, have adapted to niche environments where oxygen is limited, such as in soils, sediments, and the gastrointestinal tracts of animals. Clostridiales bacterium is particularly noteworthy due to its ability to degrade halogenated organic compounds, which are often used in industrial applications and can be environmental pollutants. By facilitating the removal of harmful halogenated substances, this bacterium plays a crucial role in bioremediation, helping to clean contaminated environments and thereby reducing the ecological footprint of industrial activities.Furthermore, its metabolic capabilities highlight the complex interactions within microbial communities, illustrating how certain bacteria can contribute to detoxification processes while sustaining themselves through diverse organic matter. As a representative of anaerobic bacteria within the Clostridiales order, this microbe exemplifies the important balance of life in anaerobic ecosystems, showcasing the interconnectedness of microbial activity and environmental health." Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium No 1 Anaerobic Chemoheterotroph caeca; crops 1898207 QALM00000000.1 Bac0007908 Curtobacterium sp. MCBA15_008 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBA15_008 1898736 MJGN00000000.1 Bac0007909 Curtobacterium sp. MCBA15_009 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBA15_009 1898737 MJGO00000000.1 Bac0007910 Curtobacterium sp. MCBA15_012 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBA15_012 1898738 NZ_CP126267.1 Bac0007911 Candidatus Melainabacteria bacterium MEL.A1 Bacillati Candidatus Melainabacteria Candidatus Melainabacteria bacterium MEL.A1 1899017 CP017245.1 Bac0007912 Oceanospirillaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Oceanospirillaceae bacterium 1899355 NZVH00000000.1 Bac0007913 Marinomonas agarivorans Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas agarivorans 1902503 NHNK00000000.2 Bac0007914 Candidatus Tokpelaia hoelldoblerii str. Hsal Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Candidatus Tokpelaia Candidatus Tokpelaia hoelldobleri 1902579 CP017315.1 Bac0007915 Macrococcus epidermidis str. 01/688 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus epidermidis 1902580 NZ_CM009974.1 Bac0007916 Macrococcus bohemicus str. 03/115 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides bohemicum 1903056 NZ_CM009973.1 Bac0007917 Sulfitobacter sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. 1903071 DPHF00000000.1 Bac0007918 Vibrio sp. 10N.261.45.E1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.261.45.E1 1903177 MKKP00000000.1 Bac0007919 Chromobacterium sphagni str. IIBBL 37-2 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium sphagni 1903179 MKCS00000000.1 Bac0007920 Candidatus Methanohalarchaeum thermophilum Methanobacteriati Methanobacteriota Methanonatronarchaeia Methanonatronarchaeales Methanonatronarchaeaceae Candidatus Methanohalarchaeum Candidatus Methanohalarchaeum thermophilum 1903181 MSDW00000000.1 Bac0007921 Candidatus Nitrosotalea okcheonensis Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Candidatus Nitrosotalea okcheonensis 1903276 NZ_LT841358.1 Bac0007922 Jeotgalibaca sp. PTS2502 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca Jeotgalibaca sp. PTS2502 1903686 NZ_CP019433.1 Bac0007923 Streptomyces sp. ZS0098 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ZS0098 1904044 MKCP00000000.1 Bac0007924 Paracoccaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccaceae bacterium 1904441 NVUX00000000.2 Bac0007925 Stenotrophomonas sp. BIIR7 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. BIIR7 1904462 MKCZ00000000.1 Bac0007926 Pseudomonas sp. 43NM1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 43NM1 1904755 MKGS00000000.1 Bac0007927 Burkholderia puraquae str. CAMPA 1040 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia puraquae 1904757 NBYX00000000.1 Bac0007928 Stenotrophomonas sp. LM091 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. LM091 1904944 NZ_CP017483.1 Bac0007929 Corynebacterium sp. CNJ-954 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. CNJ-954 1904962 MKKI00000000.1 Bac0007930 Gordonia sp. CNJ-863 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. CNJ-863 1904963 MKKG00000000.1 Bac0007931 Klebsiella sp. LTGPAF-6F Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. LTGPAF-6F 1905288 NZ_CP017452.1 Bac0007932 Thauera sp. Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera sp. 1905334 QFPR00000000.1 Bac0007933 Alphaproteobacteria bacterium AO1-B Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium AO1-B 1905358 MLAX00000000.1 Bac0007934 Pectobacterium parmentieri str. SCC3193 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium parmentieri 1905730 NC_017845.1 Bac0007935 Pectobacterium parmentieri Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium parmentieri 1905730 NZ_CP027261.1 Bac0007936 Helicobacter sp. 13S00401-1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 13S00401-1 1905758 MLAR00000000.1 Bac0007937 Corynebacterium sp. NML120713 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. NML120713 1906332 MLCR00000000.1 Bac0007938 Corynebacterium sp. NML140438 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. NML140438 1906334 MLCQ00000000.1 Bac0007939 Candidatus Reconcilbacillus cellulovorans Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Candidatus Reconcilbacillus Candidatus Reconcilbacillus cellulovorans 1906605 MOXJ00000000.1 Bac0007940 archaeon archaeon 1906665 SDYN00000000.1 Bac0007941 Thermoplasmata archaeon Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmata archaeon 1906666 QMSW00000000.1 Bac0007942 Streptomyces sp. CC77 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CC77 1906739 MKXA00000000.1 Bac0007943 Jeongeupia sp. USM3 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Jeongeupia Jeongeupia sp. USM3 1906741 NZ_CP017668.1 Bac0007944 Rodentibacter ratti Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter ratti 1906745 MLAI00000000.1 Bac0007945 Roseobacter sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseobacter Roseobacter sp. 1907202 PCCY00000000.1 Bac0007946 Bacillus velezensis "Bacillus velezensis is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrives in terrestrial environments. As an aerobic organism, it requires oxygen for growth and metabolic processes. This bacterium is known for its resilience and adaptability, characteristics that can be attributed to its sporulation capability, allowing it to survive in varied environmental conditions.↵↵Bacillus velezensis has garnered attention for its potential applications in agriculture and biocontrol due to its ability to produce a range of bioactive compounds. While specific details regarding its ecological roles and interactions remain to be fully elucidated, its terrestrial habitat suggests an involvement in soil health and nutrient cycling. Furthermore, the presence of this bacterium in agricultural settings may indicate its role in promoting plant growth and suppressing soil-borne pathogens. ↵↵Overall, Bacillus velezensis serves as a promising model for studying beneficial microbial interactions in soil ecosystems, particularly in relation to sustainable agricultural practices. Its ability to form spores not only contributes to its survival but may also play a role in its dissemination within terrestrial habitats, underscoring its ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1907305 FTNS00000000.1 Bac0007947 Janthinobacterium sp. TND4EL3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. TND4EL3 1907311 FTMV00000000.1 Bac0007948 Azospirillum sp. RU38E Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. RU38E 1907313 FZOI00000000.1 Bac0007949 Pseudomonas sp. WPR_5_2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. WPR_5_2 1907371 RBLA00000000.1 Bac0007950 Allobosea sp. TND4EK4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. TND4EK4 1907408 FTMO00000000.1 Bac0007951 Microbacterium sp. RU1D Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. RU1D 1907411 FTPQ00000000.1 Bac0007952 Jatrophihabitans sp. GAS493 Bacillati Actinomycetota Actinomycetes Jatrophihabitantales Jatrophihabitantaceae Jatrophihabitans Jatrophihabitans sp. GAS493 1907575 NZ_LT907982.1 Bac0007953 Rodentibacter myodis "Rodentibacter myodis is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement. This organism displays a distinct cellular structure typical of Gram-negative bacteria, possessing a thin peptidoglycan layer surrounded by an outer membrane, which is a characteristic feature of this group. The microaerophilic nature of R. myodis indicates that it thrives in environments with reduced oxygen levels, which may influence its metabolic pathways and ecological niches.↵↵While specific pathogenicity or ecological roles are not detailed in the available data, the traits of R. myodis suggest potential associations with rodent hosts or similar environments where microaerophilic conditions are prevalent. Such habitats could include the gastrointestinal tracts of rodents or decomposing organic matter, where oxygen levels are limited but not entirely absent.↵↵The unique combination of being a Gram-negative and microaerophilic organism positions R. myodis within a specialized ecological framework, potentially allowing it to participate in nutrient cycling or symbiotic relationships within its habitat. Further studies would be beneficial to elucidate its ecological interactions and physiological roles in the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter myodis Gram-negative non-motile microaerophile 1907939 MLHQ00000000.1 Bac0007954 Enhydrobacter sp. H5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Enhydrobacter Enhydrobacter sp. H5 1907940 MLCM00000000.1 Bac0007955 Hymenobacter glacialis str. CCM 8648 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter glacialis 1908236 MDZC00000000.1 Bac0007956 Hymenobacter lapidarius str. CCM 8643 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter lapidarius 1908237 MDZB00000000.1 Bac0007957 Rodentibacter trehalosifermentans "Rodentibacter trehalosifermentans is a Gram-negative, microaerophilic bacterium that has garnered interest due to its unique metabolic capabilities. As a member of the genus Rodentibacter, this microbe displays specific growth requirements, thriving in environments with lower oxygen concentrations than are typically found in the atmosphere. The microaerophilic nature of R. trehalosifermentans suggests that it may inhabit environments where oxygen levels fluctuate, such as in the gastrointestinal tracts of various rodents or in other organic-rich, anaerobic habitats.↵↵The Gram-negative cell wall structure of R. trehalosifermentans is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in diverse ecological niches. This structural feature is common among many bacteria and is associated with certain physiological characteristics, including resistance to some antimicrobial agents.↵↵The ability of R. trehalosifermentans to ferment trehalose indicates a specialized metabolic pathway, which could play a role in its ecological interactions, such as nutrient cycling in its habitat. Considering the bacterium's microaerophilic requirement and its metabolic capabilities, it may serve as a crucial player in the microbial community dynamics within rodent-associated ecosystems. Further investigation into its ecological role could reveal insights into the nutrient exchange processes and microbial interactions in these environments, highlighting the importance of understanding microbial diversity in maintaining ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter trehalosifermentans Gram-negative non-motile microaerophile 1908263 MLHK00000000.1 Bac0007958 Rodentibacter genomosp. 1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter genomosp. 1 1908264 MLHN00000000.1 Bac0007959 Rodentibacter genomosp. 2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter genomosp. 2 1908266 MLHO00000000.1 Bac0007960 Rodentibacter sp. Ppn85 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter sp. Ppn85 microaerophile 1908525 MLHS00000000.1 Bac0007961 Hyphomicrobiales bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiales bacterium 1909294 SEEL00000000.1 Bac0007962 Blastomonas sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Blastomonadaceae Blastomonas Blastomonas sp. 1909299 NZAM00000000.1 Bac0007963 [Actinomadura] parvosata subsp. kistnae Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea [Actinomadura] parvosata 1909395 NZ_CP017717.1 Bac0007964 Salinivibrio sp. MA351 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Salinivibrio Salinivibrio sp. MA351 1909453 MUFG00000000.1 Bac0007965 Salinivibrio sp. ML290 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Salinivibrio Salinivibrio sp. ML290 1909468 MUEY00000000.1 Bac0007966 Amycolatopsis sp. BJA-103 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. BJA-103 1911175 MVFD00000000.1 Bac0007967 Marinilactibacillus sp. 15R Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Marinilactibacillus Marinilactibacillus sp. 15R 1911586 NZ_CP017761.1 Bac0007968 Veillonella sp. T14073-2 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. T14073-2 1911680 PPDC00000000.1 Bac0007969 Thalassospira sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira sp. 1912094 PAMX00000000.1 Bac0007970 Morganella sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella sp. (in: enterobacteria) 1912315 DQAE00000000.1 Bac0007971 Paraburkholderia acidicola Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia acidicola 1912599 MTZV00000000.1 Bac0007972 Arcobacter lacus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter lacus 1912876 MUXF00000000.1 Bac0007973 Sphingobium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. 1912891 QFQF00000000.1 Bac0007974 Blautia argi str. KCTC 15426 "Blautia argi strain KCTC 15426 is a Gram-positive coccus that exists as single cells and is classified as a nonsporulating bacterium. This microbe is a chemoheterotroph, utilizing organic compounds as its primary energy source, which is consistent with its habitat within the intestinal microflora of animals. The presence of B. argi in the gastrointestinal tract suggests it may play a role in the fermentation of carbohydrates and the metabolism of various nutrients, contributing to the overall health and balance of the gut microbiome.↵↵As a member of the intestinal microflora, Blautia argi may also participate in the complex interactions that occur between gut microbes and their host, potentially influencing digestive processes and immune responses. The specific metabolic pathways and interactions of B. argi within the diverse microbial community warrant further investigation to elucidate its ecological roles and contributions to gut health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia argi Positive Cocci No 1 Chemoheterotroph Mesophilic Animal Intestinal Microflora Singles Nonsporulating 1912897 NZ_CP030280.1 Bac0007975 Gramella salexigens str. LPB0144 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia salexigens 1913577 NZ_CP018153.1 Bac0007976 Bacillus sp. FMQ74 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FMQ74 1913579 MOEO00000000.1 Bac0007977 Alphaproteobacteria bacterium "Currently, very little is known about the microbe 'Alphaproteobacteria bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium 1913988 NZDE00000000.1 Bac0007978 Gammaproteobacteria bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium 1913989 PBCU00000000.1 Bac0007979 Staphylococcus sp. LCT-H4 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp. LCT-H4 1914308 MODY00000000.1 Bac0007980 Pseudooceanicola sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola sp. 1914328 PALA00000000.1 Bac0007981 Salinisphaera sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Salinisphaerales Salinisphaeraceae Salinisphaera Salinisphaera sp. 1914330 NZYJ00000000.1 Bac0007982 Spiroplasma sp. NBRC 100390 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. NBRC 100390 1914410 NZ_CP018022.1 Bac0007983 Sphingopyxis sp. FD7 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. FD7 1914525 NZ_AP017899.1 Bac0007984 Pseudomonadaceae bacterium "Currently, very little is known about the microbe 'Pseudomonadaceae bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonadaceae bacterium 1914538 PBRO00000000.1 Bac0007985 Bacillus obstructivus str. VT-16-70 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus obstructivus 1914540 MPHG00000000.1 Bac0007986 Phenylobacterium deserti str. YIM 73061 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium deserti 1914756 QFYR00000000.1 Bac0007987 Siminovitchia terrae str. LMG 29736 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Siminovitchia Siminovitchia terrae 1914933 QYTW00000000.2 Bac0007988 Roseivirga seohaensis str. SW-152 Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga seohaensis 1914963 LRPB00000000.1 Bac0007989 Silvanigrella aquatica str. Nonnen-W8red Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella aquatica 1915309 NZ_CP017835.1 Bac0007990 Thioclava sp. DLFJ5-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava sp. DLFJ5-1 1915314 MPZU00000000.1 Bac0007991 Thioclava sp. L04-15 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava sp. L04-15 1915318 MPZW00000000.1 Bac0007992 Alteromonadaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonadaceae bacterium 1916082 NZSW00000000.1 Bac0007993 Candidatus Gastranaerophilales bacterium HUM_19 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_19 1916219 DABQ00000000.1 Bac0007994 Candidatus Gastranaerophilales bacterium HUM_17 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_17 1916220 DABO00000000.1 Bac0007995 Candidatus Gastranaerophilales bacterium HUM_7 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_7 1916228 DABE00000000.1 Bac0007996 Candidatus Gastranaerophilales bacterium HUM_10 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_10 1916229 DABH00000000.1 Bac0007997 Candidatus Gastranaerophilales bacterium HUM_9 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_9 1916320 DABG00000000.1 Bac0007998 Bacillus sp. VT-16-64 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. VT-16-64 1917019 MSRF00000000.1 Bac0007999 Parathermosynechococcus lividus PCC 6715 Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Thermosynechococcaceae Parathermosynechococcus Parathermosynechococcus lividus 1917166 NZ_CP018092.1 Bac0008000 Mesobacillus zeae str. JJ-247 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Mesobacillus Mesobacillus zeae 1917180 QWVT00000000.1 Bac0008001 Paracandidimonas soli str. DSM 100048 "Paracandidimonas soli strain DSM 100048 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics and thrives optimally at a temperature of 25.0°C. The organism is noted for its non-spore-forming nature, indicating that it does not produce spores as a means of survival under adverse conditions. ↵↵As a facultative organism, P. soli has the metabolic flexibility to grow in both the presence and absence of oxygen, which may allow it to occupy diverse ecological niches. This trait could facilitate its survival in various environments where oxygen levels fluctuate. The optimal growth temperature of 25.0°C suggests a potential adaptation to temperate climates, possibly aligning with environments such as soil or decaying organic matter where it may play a role in nutrient cycling.↵↵The specific ecological role of Paracandidimonas soli str. DSM 100048 remains to be fully elucidated; however, its metabolic capabilities may contribute to the degradation of organic materials, thereby influencing soil health and fertility. Further research is necessary to explore its interactions with other soil microorganisms and its potential applications in biotechnology or environmental sustainability." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Paracandidimonas Paracandidimonas soli Gram-negative rod facultative aerobe/anaerobe 25 mesophilic non-spore-forming 1917182 SMBX00000000.1 Bac0008002 Fluviicola sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Fluviicola Fluviicola sp. 1917219 NVXU00000000.2 Bac0008003 Ketobacter alkanivorans str. GI5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Ketobacteraceae Ketobacter Ketobacter alkanivorans 1917421 NZ_CP022684.1 Bac0008004 Streptococcus ruminantium str. GUT-187 "Streptococcus ruminantium str. GUT-187 is a Gram-positive, spherical bacterium that exhibits an aerobic metabolism and is characterized by its non-spore-forming nature. This strain is part of the Streptococcus genus, which is known for its diverse roles in various environments, including the gastrointestinal tracts of ruminants. The spherical morphology of S. ruminantium str. GUT-187 may confer advantages in its habitat, potentially facilitating close interactions with other microbial species within complex communities. ↵↵As an aerobic organism, S. ruminantium str. GUT-187 is likely adapted to environments rich in oxygen, which may influence its metabolic pathways and interactions with host organisms. The presence of this strain within the gut microbiome of ruminants suggests it may play a role in fermentation processes or nutrient cycling, although the specific functional contributions of this strain to the overall microbial community dynamics remain to be fully elucidated. Understanding the ecological roles of such bacteria could provide insights into their potential contributions to host health and digestion, particularly in the context of ruminant nutrition and microbiome stability." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus ruminantium Gram-positive sphere non-motile aerobic non-spore-forming 1917441 NZ_AP018400.1 Bac0008005 Methanosaeta sp. NSP1 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. NSP1 1917472 NOLC00000000.1 Bac0008006 Methanosaeta sp. ASP1-2 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. ASP1-2 1917476 NOLG00000000.1 Bac0008007 Pseudomonas sp. FSL W5-0299 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FSL W5-0299 1917484 MPIP00000000.1 Bac0008008 Sulfitobacter alexandrii Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter alexandrii 1917485 NZ_CP018079.1 Bac0008009 Vibrio palustris "Vibrio palustris is a Gram-negative, spherical bacterium characterized by its versatility in energy acquisition, functioning as both an organotroph and chemotroph. This microbe thrives optimally at a temperature of 25.0 °C, which may suggest a preference for temperate environmental conditions. As a facultative aerobe/anaerobe, V. palustris can adapt to varying oxygen levels, allowing it to survive in diverse habitats, including both oxygen-rich and oxygen-poor environments.↵↵The ability to utilize organic compounds for energy signifies its role in the decomposition of organic matter, potentially contributing to nutrient cycling in its ecosystem. Furthermore, the facultative nature of its respiration might enable it to inhabit fluctuating environments where oxygen availability can change rapidly. Understanding the metabolic flexibility of V. palustris may provide insights into its ecological roles, particularly in environments where both aerobic and anaerobic processes are prevalent, such as wetlands or estuarine systems. This adaptability not only underscores the microbe's resilience but also suggests potential interactions with other microbial communities in its habitat, highlighting its importance in maintaining ecological balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio palustris Gram-negative sphere facultative aerobe/anaerobe 25 organotroph; chemotroph mesophilic 1918946 FUFT00000000.1 Bac0008010 Solemya velesiana gill symbiont Pseudomonadati Pseudomonadota Gammaproteobacteria Solemya velesiana gill symbiont 1918948 MPRJ00000000.1 Bac0008011 Cyanobacteria bacterium QS_8_64_29 Bacillati Cyanobacteriota Cyanobacteria bacterium QS_8_64_29 1919134 PXQH00000000.1 Bac0008012 Halobacteriales archaeon QH_6_64_20 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriales archaeon QH_6_64_20 1919154 PXQR00000000.1 Bac0008013 Halobacteriales archaeon QS_1_68_20 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriales archaeon QS_1_68_20 1919169 PXRE00000000.1 Bac0008014 Flavobacterium sp. YO12 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. YO12 1920029 NRQU00000000.1 Bac0008015 Citrobacter sp. CFNIH10 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. CFNIH10 1920110 NZ_CP026216.1 Bac0008016 Aeromonas sp. ASNIH8 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. ASNIH8 1920113 PQLN00000000.1 Bac0008017 Leclercia sp. LSNIH1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Leclercia sp. LSNIH1 1920114 NZ_CP026169.1 Bac0008018 Sphingomonas sp. S-NIH.Pt1_0416 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. S-NIH.Pt1_0416 1920123 QLJL00000000.1 Bac0008019 Sphingomonas sp. S-NIH.Pt15_0812 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. S-NIH.Pt15_0812 1920129 QLJH00000000.1 Bac0008020 Archangium sp. Cb G35 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp. Cb G35 1920190 MPOI00000000.1 Bac0008021 Desulfobulbaceae bacterium DB1 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbaceae bacterium DB1 1920419 MQUF00000000.1 Bac0008022 Paenibacillus sp. FSL H7-0331 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL H7-0331 1920421 MRTH00000000.1 Bac0008023 Phormidesmis priestleyi ULC007 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Phormidesmis Phormidesmis priestleyi 1920490 PVWG00000000.1 Bac0008024 Oharaeibacter diazotrophicus str. DSM 102969 "Oharaeibacter diazotrophicus str. DSM 102969 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microbe has an optimal growth temperature of 29.0°C, suggesting a preference for moderate environmental conditions. As a member of the domain Bacteria, O. diazotrophicus contributes to nitrogen fixation processes, which are critical for nutrient cycling in various ecosystems. ↵↵The aerobic nature of this organism indicates its reliance on oxygen for metabolic processes, positioning it within environments where oxygen is readily available. Its non-spore-forming characteristic may imply a vulnerability to adverse conditions, as it lacks the ability to enter a dormant state to withstand extreme environmental stressors. ↵↵In ecological contexts, the presence of O. diazotrophicus in nitrogen-rich environments could enhance soil fertility and plant growth, making it a potentially beneficial microbe for agricultural applications. Understanding its physiological traits provides insights into its functional roles in nitrogen cycling and ecosystem dynamics, highlighting the importance of microbial diversity in maintaining ecological balance." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Pleomorphomonadaceae Oharaeibacter Oharaeibacter diazotrophicus Gram-negative rod aerobic 29 mesophilic non-spore-forming 1920512 SNXY00000000.1 Bac0008025 Ochrobactrum sp. P6BS-III Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum sp. P6BS-III 1920636 MPPJ00000000.1 Bac0008026 Aphanothece sacrum FPU1 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Aphanothece Aphanothece sacrum 1920663 BDQK00000000.1 Bac0008027 Candidatus Mancarchaeum acidiphilum str. Mia14 Nanobdellati Microcaldota Candidatus Mancarchaeum Candidatus Mancarchaeum acidiphilum 1920749 NZ_CP019964.1 Bac0008028 Flavobacterium sufflavum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sufflavum 1921138 SACJ00000000.1 Bac0008029 Paenibacillus sp. FSL H7-0326 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL H7-0326 1921144 MPVN00000000.1 Bac0008030 Geobacillus genomosp. 3 str. JF8 "Geobacillus genomosp. 3 str. JF8 is a rod-shaped bacterium characterized by its thermophilic nature, which allows it to thrive in high-temperature environments. This organism is part of the Geobacillus genus, known for its ability to endure extreme conditions, which is often linked to its capacity for producing heat-stable enzymes. The rod shape of Geobacillus genomosp. 3 str. JF8 is typical of the genus, contributing to its adaptability in various ecological niches.↵↵This strain is noteworthy for its potential industrial applications, particularly in the fields of biotechnology and bioremediation, where thermophilic organisms are increasingly sought after for their enzymatic capabilities at elevated temperatures. The structural characteristics of Geobacillus genomosp. 3 str. JF8 suggest that it may play a significant role in organic matter decomposition in thermally-active environments, such as hot springs or geothermal areas.↵↵Furthermore, the ability of Geobacillus species to produce enzymes that function optimally at high temperatures may facilitate the breakdown of complex organic compounds, thereby contributing to nutrient cycling in such ecosystems. This ecological role underscores the importance of thermophilic bacteria in maintaining the health and functionality of their native environments, particularly under conditions that would be inhospitable for mesophilic organisms." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus genomosp. 3 Rod 1921421 NC_022080.4 Bac0008031 Leptolyngbya sp. 'hensonii' Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. 'hensonii' 1922337 MQTZ00000000.1 Bac0008032 Pasteurellaceae bacterium 15-036681 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium 15-036681 1924934 MQVI00000000.1 Bac0008033 Mameliella sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Mameliella Mameliella sp. 1924940 PBYN00000000.1 Bac0008034 Oceanicaulis sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Oceanicaulis Oceanicaulis sp. 1924941 PAZN00000000.1 Bac0008035 Rhodococcus sp. M8 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. M8 1925550 MLYX00000000.2 Bac0008036 Lutibacter sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lutibacter Lutibacter sp. 1925666 NVWM00000000.1 Bac0008037 Roseomonas sp. TAS13 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Roseomonas sp. TAS13 1926319 BDLP00000000.1 Bac0008038 Psychrobacter sp. C 20.9 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. C 20.9 1926477 MRYC00000000.1 Bac0008039 Psychrobacter sp. Cmf 22.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. Cmf 22.2 1926478 MRYA00000000.1 Bac0008040 Paraburkholderia sp. SOS3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. SOS3 1926494 NZ_CP018813.1 Bac0008041 Paenibacillus sp. FSL R7-0337 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R7-0337 1926588 MRTX00000000.1 Bac0008042 SAR202 cluster bacterium Io17-Chloro-G3 Bacillati Chloroflexota Dehalococcoidia SAR202 cluster bacterium Io17-Chloro-G3 1926612 MUCQ00000000.1 Bac0008043 SAR202 cluster bacterium Io17-Chloro-G6 Bacillati Chloroflexota Dehalococcoidia SAR202 cluster bacterium Io17-Chloro-G6 1926615 MUCT00000000.1 Bac0008044 Pedobacter kyonggii str. K-4-11-1 "Pedobacter kyonggii strain K-4-11-1 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments. The rod shape and aerobic nature of P. kyonggii suggest its adaptation to specific ecological niches, potentially involving soil or freshwater habitats where oxygen levels are sufficient and temperatures are moderate. ↵↵As a non-spore-forming organism, P. kyonggii may rely on alternative survival strategies in unfavorable conditions, such as the production of protective metabolites or biofilm formation. The specific temperature and oxygen preferences highlight its potential role in biogeochemical cycles in environments where these conditions prevail. Further studies could elucidate the ecological significance of this organism, particularly in nutrient cycling and interactions with other microbial communities in its native habitat." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter kyonggii Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 1926871 SIXF00000000.1 Bac0008045 Lysobacteraceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium 1926873 SEHB00000000.1 Bac0008046 Oleiagrimonas sp. MCCC 1A03011 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Oleiagrimonas Oleiagrimonas sp. MCCC 1A03011 1926883 MSPY00000000.1 Bac0008047 Actinomadura rubteroloni Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura rubteroloni 1926885 MTBP00000000.1 Bac0008048 Mycobacterium aquaticum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium aquaticum non-motile non-spore-forming 1927124 MVHF00000000.1 Bac0008049 Methanonatronarchaeum thermophilum str. AMET1 Methanobacteriati Methanobacteriota Methanonatronarchaeia Methanonatronarchaeales Methanonatronarchaeaceae Methanonatronarchaeum Methanonatronarchaeum thermophilum 1927129 MRZU00000000.1 Bac0008050 Croceicoccus sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Croceicoccus Croceicoccus sp. 1927144 NZMY00000000.1 Bac0008051 Dyella monticola Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella monticola 1927958 QRBE00000000.1 Bac0008052 Salinicola sp. MH3R3-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Salinicola Salinicola sp. MH3R3-1 1928762 MSDP00000000.1 Bac0008053 Croceivirga radicis str. HSG9 "Croceivirga radicis str. HSG9 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C and exhibits strict aerobic metabolic requirements. This organism belongs to a group of bacteria that are adapted to environments where oxygen is readily available, which may suggest its ecological role in aerobic niches. ↵↵The rod shape of Croceivirga radicis str. HSG9 is characteristic of many bacteria within the same ecological frameworks, providing it with a structural advantage for motility and nutrient acquisition in its environment. The optimal growth temperature of 29.0°C indicates a preference for moderate conditions, which can be reflective of its habitat, potentially aligning with temperate climates or specific microhabitats where such temperatures are prevalent.↵↵Understanding the physiological traits of Croceivirga radicis str. HSG9 can contribute to insights into its ecological interactions, particularly in relation to its aerobic lifestyle. This bacterium may play a role in nutrient cycling or organic matter decomposition in its native environment, emphasizing the ecological significance of aerobic bacteria in maintaining ecosystem health and functionality. Further research into its specific ecological roles could illuminate the complex interactions within microbial communities and their contributions to broader biogeochemical processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Croceivirga Croceivirga radicis Gram-negative rod motile aerobic 29 mesophilic 1929488 MTBC00000000.1 Bac0008054 Methylomusa anaerophila str. MMFC1 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Methylomusa Methylomusa anaerophila 1930071 NZ_AP018449.1 Bac0008055 Sphingomonadaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonadaceae bacterium 1930536 NZAR00000000.1 Bac0008056 Shewanella sp. FDAARGOS_354 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. FDAARGOS_354 1930557 NZ_CP022089.2 Bac0008057 Micrococcus sp. FDAARGOS_333 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus sp. FDAARGOS_333 1930558 NJFJ00000000.2 Bac0008058 Christiangramia sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia sp. 1931228 NZOU00000000.1 Bac0008059 Marinitenerispora sediminis Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Marinitenerispora Marinitenerispora sediminis 1931232 QEIN00000000.1 Bac0008060 Halorientalis sp. IM1011 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis sp. IM1011 1932360 NZ_CP019067.1 Bac0008061 Haliea sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Haliea Haliea sp. 1932666 PBNU00000000.1 Bac0008062 Nostoc sp. RF31YmG Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. RF31YmG 1932668 MTAX00000000.1 Bac0008063 Lentisphaerae bacterium Pseudomonadati Lentisphaerota Lentisphaerota bacterium 1932692 QAKF00000000.1 Bac0008064 archaeon D22 archaeon D22 1932700 MSYC00000000.1 Bac0008065 Ktedonobacter sp. Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonobacter Ktedonobacter sp. 1932716 DPEU00000000.1 Bac0008066 Leptospira santarosai serovar Grippotyphosa Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 1933030 MTST00000000.1 Bac0008067 Pseudoruegeria sp. SK021 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pseudoruegeria Pseudoruegeria sp. SK021 1933035 MTBG00000000.1 Bac0008068 Sphingobacterium sp. B29 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. B29 1933220 NZ_CP019158.1 Bac0008069 Thermoplasmata archaeon M11B2D Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmata archaeon M11B2D 1933281 MUGE00000000.1 Bac0008070 Microbacterium sp. CSI-V Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. CSI-V 1933777 MTQM00000000.1 Bac0008071 Saccharothrix sp. ALI-22-I Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix sp. ALI-22-I 1933778 MTQP00000000.1 Bac0008072 Glutamicibacter halophytocola str. KLBMP5180 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter halophytocola 1933880 NZ_CP012751.1 Bac0008073 Candidatus Altarchaeales archaeon A3 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon A3 1933927 MTER00000000.1 Bac0008074 Alkalinema sp. CACIAM 70d Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Alkalinema Alkalinema sp. CACIAM 70d 1934309 MUGG00000000.1 Bac0008075 Arcobacter porcinus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter porcinus 1935204 LDIR00000000.1 Bac0008076 Lebetimonas natsushimae Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Lebetimonas Lebetimonas natsushimae 1936991 BDME00000000.1 Bac0008077 Mycoplasma marinum str. PE Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma marinum 1937190 PSZO00000000.1 Bac0008078 Pasteurellaceae bacterium "Currently, very little is known about the microbe 'Pasteurellaceae bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium 1938151 DOEY00000000.1 Bac0008079 Aquaspirillum sp. LM1 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Aquaspirillaceae Aquaspirillum Aquaspirillum sp. LM1 1938604 NZ_CP019509.1 Bac0008080 Deinococcus sp. LM3 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. LM3 1938608 MUFV00000000.1 Bac0008081 Rathayibacter rhapontici Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter rhapontici 1938617 MUKN00000000.1 Bac0008082 Bacillus sp. JKS001846 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. JKS001846 1938743 FWYG00000000.1 Bac0008083 Methylobacterium sp. B4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. B4 1938755 QJJJ00000000.1 Bac0008084 Pantoea sp. JKS000250 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. JKS000250 1938795 QICZ00000000.1 Bac0008085 Paraburkholderia sp. BL18I3N2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL18I3N2 1938799 PVNC00000000.1 Bac0008086 Paraburkholderia sp. BL21I4N1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL21I4N1 1938801 PVEN00000000.1 Bac0008087 Paraburkholderia sp. BL8N3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL8N3 1938808 SMGB00000000.1 Bac0008088 Polynucleobacter meluiroseus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter meluiroseus 1938814 OANS00000000.1 Bac0008089 Polynucleobacter brandtiae Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter brandtiae 1938816 PGTX00000000.1 Bac0008090 Polynucleobacter kasalickyi Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter kasalickyi 1938817 FWXJ00000000.1 Bac0008091 Streptomyces sp. 1331.2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 1331.2 1938835 OBMJ00000000.1 Bac0008092 Streptomyces sp. 2221.1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2221.1 1938837 QUNN00000000.1 Bac0008093 Streptomyces sp. 2321.6 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2321.6 1938840 NSGX00000000.1 Bac0008094 Streptomyces sp. 2333.5 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2333.5 1938842 PGEO00000000.1 Bac0008095 Streptomyces sp. 3212.3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 3212.3 1938846 QTTM00000000.1 Bac0008096 Streptomyces sp. Ag109_G2-15 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ag109_G2-15 1938850 OCNI00000000.1 Bac0008097 Streptomyces sp. TLI_146 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TLI_146 1938858 PJMX00000000.1 Bac0008098 Streptomyces sp. TLI_235 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TLI_235 1938860 NSGV00000000.1 Bac0008099 Micrococcaceae bacterium JKS001869 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcaceae bacterium JKS001869 1938872 PDBY00000000.1 Bac0008100 Dyella sp. AtDHG13 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella sp. AtDHG13 1938897 QICJ00000000.1 Bac0008101 Hoeflea sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Hoeflea Hoeflea sp. 1940281 PANK00000000.1 Bac0008102 Rhodosalinus sediminis str. WDN1C137 "Rhodosalinus sediminis str. WDN1C137 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This microbe has an optimal growth temperature of 37.0°C, suggesting it is well adapted to warm environments, potentially similar to those found in human-associated or temperate habitats.↵↵The Gram-negative nature of R. sediminis str. WDN1C137 indicates the presence of a thin peptidoglycan layer and an outer membrane, a trait commonly associated with increased resistance to certain antibiotics and environmental stresses. Its rod shape may facilitate motility and nutrient uptake, enhancing its adaptability in diverse ecological niches.↵↵Given its facultative lifestyle, R. sediminis str. WDN1C137 may play a significant role in biogeochemical processes, particularly in sedimentary environments where oxygen availability fluctuates. This adaptability could allow the microbe to participate in various metabolic pathways, including fermentation and respiration, depending on the prevailing conditions. Such metabolic versatility positions R. sediminis str. WDN1C137 as a potential contributor to nutrient cycling within its habitat, highlighting the importance of understanding its ecological roles in sedimentary ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodosalinus Rhodosalinus sediminis Gram-negative rod motile facultative aerobe/anaerobe 37 mesophilic 1940533 QOHR00000000.1 Bac0008103 Desulfobacca sp. 4484_104 Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales Desulfobaccaceae Desulfobacca Desulfobacca sp. 4484_104 1940691 MUKC00000000.1 Bac0008104 Streptomyces sp. MH60 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MH60 1940758 MULI00000000.1 Bac0008105 Coprobacter sp. Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Coprobacter Coprobacter sp. 1941478 QAMD00000000.1 Bac0008106 Oribacterium sp. C9 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Oribacterium Oribacterium sp. C9 1943579 MUHW00000000.1 Bac0008107 blood disease bacterium A2-HR MARDI Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia syzygii 1944648 NZ_CP019911.1 Bac0008108 Streptomyces sp. 111WW2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 111WW2 1945515 MUYY00000000.1 Bac0008109 Methanosphaera sp. rholeuAM270 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. rholeuAM270 1945577 MUZX00000000.1 Bac0008110 Methanosphaera sp. rholeuAM130 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. rholeuAM130 1945578 MUZY00000000.1 Bac0008111 Chryseobacterium mucoviscidosis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium mucoviscidosis 1945581 MWZC00000000.1 Bac0008112 Oscillibacter sp. "Oscillibacter sp. is a genus of nonsporulating, chemoheterotrophic bacteria that reside within the intestinal microflora of various animals. While specific morphological traits such as Gram stain, shape, and cell arrangement are not well characterized, the ecological role of Oscillibacter sp. is of significant interest due to its contribution to gut microbiome dynamics. These bacteria are typically found in the gastrointestinal tracts of mammals, where they play a vital role in the fermentation of dietary fibers and the production of short-chain fatty acids. This process not only aids in digestion but also influences the overall metabolic health of the host. Oscillibacter sp. has garnered attention for its potential associations with various health conditions, including obesity and metabolic disorders, suggesting a link between gut microbiota composition and host physiological states. The presence of Oscillibacter in the gut may reflect the dietary habits of the host, as its abundance can fluctuate based on the types of substrates available for fermentation. Interestingly, some studies have indicated that Oscillibacter sp. can be affected by the introduction of prebiotics and probiotics, highlighting their potential responsiveness to dietary interventions. In ecological terms, Oscillibacter sp. contributes to the complex interplay of microbial communities within the gut, facilitating interspecies interactions and influencing the metabolic outputs of the microbiome. This highlights the potential of Oscillibacter and related microbes as targets for therapeutic strategies aimed at improving gut health and overall well-being through dietary modifications." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Oscillibacter sp. Positive No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1945593 DQEO00000000.1 Bac0008113 Methanosphaera sp. SHI613 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. SHI613 1945631 MVJJ00000000.1 Bac0008114 Streptomyces sp. NBS 14/10 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBS 14/10 1945643 NCSM00000000.2 Bac0008115 Capnocytophaga sp. H2931 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. H2931 1945657 NZ_CP022381.1 Bac0008116 Rhodanobacter sp. C05 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. C05 1945855 MUNQ00000000.1 Bac0008117 Algoriphagus sp. A40 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus sp. A40 1945863 MUNY00000000.1 Bac0008118 Hydrogenophaga sp. A37 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. A37 1945864 MUNZ00000000.1 Bac0008119 Bacteroidales bacterium WCE2008 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium WCE2008 1945891 FUZM00000000.1 Bac0008120 Rhodobacterales bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium 1948890 PDRY00000000.1 Bac0008121 Pseudomonas sp. PICF141 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PICF141 1949067 MUNM00000000.1 Bac0008122 Raskinella chloraquaticus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phreatobacteraceae Candidatus Raskinella Candidatus Raskinella chloraquaticus 1951219 LWDL00000000.1 Bac0008123 Cellvibrio sp. 79 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrio Cellvibrio sp. 79 1954207 MVDH00000000.1 Bac0008124 Geobacillus sp. LEMMY01 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. LEMMY01 1954237 MVKA00000000.1 Bac0008125 Staphylococcus edaphicus str. CCM 8730 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus edaphicus aerobic 1955013 MRZN00000000.1 Bac0008126 Sedimentibacter sp. SX930 Bacillati Bacillota Tissierellia Sedimentibacter Sedimentibacter sp. SX930 1955060 MUZD00000000.1 Bac0008127 Blautia sp. Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. 1955243 DNLJ00000000.1 Bac0008128 Cohnella sp. CIP 111063 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella sp. CIP 111063 1955714 MWSG00000000.1 Bac0008129 Pseudomonas floridensis str. GEV388 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas floridensis 1958950 MUIO00000000.1 Bac0008130 Actinomyces gaoshouyii str. pika_114 "Actinomyces gaoshouyii strain pika_114 is a Gram-positive, rod-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism and non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, suggesting a possible adaptation to specific environmental niches that maintain moderate temperatures. ↵↵As a member of the Actinomyces genus, A. gaoshouyii may play a role in various biological processes, although specific ecological functions have not been detailed in the available data. The facultative anaerobic capability indicates that it can survive in both the presence and absence of oxygen, potentially allowing it to inhabit diverse environments, including those that fluctuate in oxygen availability. ↵↵Further research could elucidate its specific ecological roles, particularly in relation to its optimal growth temperature, which may align with certain ecological zones or host organisms. Understanding the ecological niches occupied by A. gaoshouyii could provide insights into its interactions within microbial communities, as well as its potential utility in biotechnological applications or environmental processes." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces gaoshouyii Gram-positive rod non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 1960083 NZ_CP020468.1 Bac0008131 Abditibacterium utsteinense str. LMG 29911 Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae Abditibacterium Abditibacterium utsteinense 1960156 NIGF00000000.1 Bac0008132 Citreicella sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Citreicella Citreicella sp. 1960284 DOLO00000000.1 Bac0008133 Klenkia marina Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Klenkia Klenkia marina 1960309 FMUH00000000.1 Bac0008134 Acinetobacter sp. MF4642 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. MF4642 1960825 MVON00000000.1 Bac0008135 Pseudomonas sp. MF4836 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MF4836 1960827 MVOL00000000.1 Bac0008136 Pseudomonas sp. MF6396 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MF6396 1960828 MVOK00000000.1 Bac0008137 Pseudomonas sp. MF6394 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MF6394 1960829 MVOJ00000000.1 Bac0008138 Acinetobacter sp. ANC 5600 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 5600 1960940 MVKW00000000.1 Bac0008139 Bifidobacterium italicum str. 70 "Bifidobacterium italicum strain 70 is a Gram-positive, nonsporulating bacterium that resides in the gut of its host, exhibiting facultative anaerobic metabolism. This species is part of the diverse microbiota commonly found in the intestinal tract, where it plays a significant role in maintaining gut health. Bifidobacteria, including B. italicum, are known for their ability to ferment a variety of carbohydrates, contributing to the production of short-chain fatty acids and other beneficial metabolites that can influence host metabolism and immune function.↵↵As a facultative anaerobe, B. italicum strain 70 can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels present in the gut. This adaptability may enhance its survival and competitive advantage within the complex microbial community of the gastrointestinal tract.↵↵The presence of B. italicum in the gut is indicative of a healthy microbiome, as bifidobacteria are associated with numerous beneficial effects, including the suppression of pathogenic bacteria and modulation of the host's immune response. Understanding the specific roles and interactions of B. italicum strain 70 within the gut ecosystem could provide valuable insights into its potential contributions to gut health and overall well-being. Further research may elucidate its precise metabolic capabilities and interactions with other gut microbiota, highlighting its significance in the context of human health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium italicum Positive No Facultative Anaerobe Host Gut Nonsporulating 1960968 MVOG00000000.1 Bac0008140 Bifidobacterium criceti str. 71 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium criceti anaerobic 1960969 MVOH00000000.1 Bac0008141 Thermoplasmatales archaeon B_DKE Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon B_DKE 1961136 MWKR00000000.1 Bac0008142 Gordonia sp. i37 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. i37 1961707 MVPX00000000.1 Bac0008143 Rickettsia endosymbiont of Culicoides newsteadi str. RiCNE Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia endosymbiont of Culicoides newsteadi 1961830 MWZE00000000.1 Bac0008144 Mycobacteroides abscessus subsp. massiliense str. GD01A Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus 1962118 NZ_CP035923.1 Bac0008145 Mycobacteroides abscessus subsp. massiliense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus 1962118 FVGW00000000.1 Bac0008146 Clostridium tepidum "Clostridium tepidum is a Gram-positive, thermophilic bacillus that thrives in anaerobic environments, exhibiting optimal growth at around 45°C. Nonsporulating in nature, this microbe is typically found in host-associated habitats, often within the intestines of various warm-blooded animals, contributing to the diverse microbial communities present in these ecosystems. The anaerobic lifestyle of C. tepidum aligns with its habitat, as it relies on the absence of oxygen to flourish, which is crucial for its metabolic processes, although specific metabolic pathways have not been extensively documented. This organism’s ability to thrive in high-temperature environments allows it to play a significant role in the degradation of organic matter, particularly in thermally active habitats, such as hot springs and compost heaps. Clostridium tepidum, like other members of the Clostridia class, is likely involved in biogeochemical cycles, contributing to the breakdown of complex organic compounds and facilitating nutrient recycling in its native ecosystem. The microbe’s thermophilic nature not only positions it as an essential player in anaerobic decomposition processes but also suggests potential applications in biotechnology, such as bioremediation and bioenergy production, where its heat tolerance could be harnessed. This highlights the importance of understanding such extremophiles in broader ecological and industrial contexts." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tepidum Positive Rod Yes Anaerobic 45 Thermophilic HostAssociated Nonsporulating 1962263 MRAE00000000.1 Bac0008147 Novosphingobium sp. PC22D Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. PC22D 1962403 MWMO00000000.1 Bac0008148 Desulfurella sp. Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Desulfurellaceae Desulfurella Desulfurella sp. anaerobic 1962857 PNIZ00000000.1 Bac0008149 Geobacillus sp. 44B Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. 44B 1963023 NADP00000000.1 Bac0008150 Geobacillus sp. 46C-IIa Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. 46C-IIa 1963025 NADR00000000.1 Bac0008151 Fibrobacter sp. UWB2 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB2 1964358 MWQK00000000.1 Bac0008152 Sneathiella sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Sneathiellales Sneathiellaceae Sneathiella Sneathiella sp. 1964365 NZMB00000000.1 Bac0008153 Candidatus Borreliella tachyglossi str. Bc-F10-1268 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Candidatus Borrelia tachyglossi 1964448 NZ_CP025786.1 Bac0008154 Pantoea latae str. AS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea latae 1964541 MWUE00000000.1 Bac0008155 Cellvibrio sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrio Cellvibrio sp. 1965322 DQHS00000000.1 Bac0008156 Zunongwangia sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zunongwangia Zunongwangia sp. 1965325 PAAI00000000.1 Bac0008157 Flavonifractor sp. An10 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An10 1965537 NFMB00000000.1 Bac0008158 Flavonifractor sp. An100 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An100 1965538 NFMA00000000.1 Bac0008159 Flavonifractor sp. An112 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An112 1965544 NFLU00000000.1 Bac0008160 Lachnoclostridium sp. An118 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. An118 1965547 NFLQ00000000.1 Bac0008161 Gemmiger sp. An120 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Gemmiger Gemmiger sp. An120 1965549 NFLN00000000.1 Bac0008162 Faecalibacterium sp. An122 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. An122 1965551 NFLL00000000.1 Bac0008163 Lachnoclostridium sp. An131 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. An131 1965555 NFLI00000000.1 Bac0008164 Massilimicrobiota sp. An134 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massiliimicrobium Massilimicrobiota sp. An134 1965557 NFLH00000000.1 Bac0008165 Massilimicrobiota sp. An142 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massiliimicrobium Massilimicrobiota sp. An142 1965564 NFLD00000000.1 Bac0008166 Lachnoclostridium sp. An169 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. An169 1965569 NFKT00000000.1 Bac0008167 Erysipelatoclostridium sp. An173 "Erysipelatoclostridium sp. An173 is a Gram-positive bacterium recognized for its unique characteristics within the Clostridia class. This microbe exhibits typical clostridial morphological features, including a rod-shaped structure, which is common among its relatives. As a member of the Erysipelatoclostridium genus, it is anticipated to possess metabolic pathways that align with the ecological roles typically attributed to clostridia, particularly in anaerobic environments.↵↵The Gram-positive nature of Erysipelatoclostridium sp. An173 suggests a robust cell wall structure, primarily composed of peptidoglycan, which may confer certain advantages in survival and resilience in various habitats. While the specific metabolic capabilities of this strain remain uncharacterized, it is plausible to consider that it may engage in fermentation processes, a hallmark of clostridial metabolism, potentially contributing to nutrient cycling in anaerobic ecosystems.↵↵Further investigation into its ecological role may reveal insights into its interactions within microbial communities, particularly in soils or gastrointestinal environments where other anaerobes coexist. Understanding Erysipelatoclostridium sp. An173's ecological niche could enhance our knowledge of microbial diversity and the functional roles that Gram-positive bacteria play in maintaining ecosystem health, particularly in anaerobic conditions." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Erysipelatoclostridium sp. An173 Positive 1965571 NFKR00000000.1 Bac0008168 Drancourtella sp. An177 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Drancourtella Drancourtella sp. An177 1965573 NFKN00000000.1 Bac0008169 Lachnoclostridium sp. An181 "Currently, very little is known about the microbe 'Lachnoclostridium sp. An181'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. An181 No 1 1965575 NFKJ00000000.1 Bac0008170 Gemmiger sp. An194 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Gemmiger Gemmiger sp. An194 1965582 NFKA00000000.1 Bac0008171 Anaeromassilibacillus sp. An200 Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Anaeromassilibacillus Anaeromassilibacillus sp. An200 1965587 NFJU00000000.1 Bac0008172 Megasphaera sp. An286 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera sp. An286 1965622 NFIY00000000.1 Bac0008173 Alistipes sp. An31A Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. An31A 1965631 NFIO00000000.1 Bac0008174 Bacteroides sp. An322 "Bacteroides sp. An322 is a nonsporulating, bacilli-shaped bacterium that serves as a chemoheterotrophic organism, thriving as part of the complex microbial community found in the intestinal microflora of animals. This species is adapted to mesophilic conditions, typically flourishing within a temperature range conducive to the warm environment of the gut. As an anaerobic microbe, Bacteroides sp. An322 plays a critical role in the digestion of complex carbohydrates that are indigestible by the host, utilizing these organic compounds as an energy source. The presence of Bacteroides sp. An322 in the gastrointestinal tract contributes to various essential processes, including the fermentation of dietary fibers, which results in the production of short-chain fatty acids. These metabolites are vital for the host's health, providing energy to colonocytes (the cells lining the colon) and playing a role in maintaining gut health and homeostasis. Additionally, Bacteroides species are known to modulate the immune response, potentially influencing inflammatory processes and protecting against pathogenic organisms. Ecologically, Bacteroides sp. An322 exemplifies the intricate symbiotic relationships within the gut microbiota, highlighting how microbial communities can collaboratively influence the host's nutritional status and immune functions. This interplay underscores the importance of maintaining a balanced gut microbiome, as disruptions in these communities can lead to various health issues, including obesity and inflammatory bowel diseases." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. An322 Negative Rod No 1 Anaerobic Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 1965632 NFIN00000000.1 Bac0008175 Gemmiger sp. An50 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Gemmiger Gemmiger sp. An50 1965639 NFID00000000.1 Bac0008176 Bacteroides sp. An51A Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. An51A 1965640 NFIC00000000.1 Bac0008177 Flavonifractor sp. An52 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An52 1965642 NFIB00000000.1 Bac0008178 Drancourtella sp. An57 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Drancourtella Drancourtella sp. An57 1965647 NFHY00000000.1 Bac0008179 Butyricimonas sp. An62 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas sp. An62 anaerobic 1965649 NFHW00000000.1 Bac0008180 Alistipes sp. An66 "Currently, very little is known about the microbe 'Alistipes sp. An66'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. An66 No 1 1965650 NFHT00000000.1 Bac0008181 Blautia sp. An81 "Blautia sp. An81 is a Gram-positive, nonsporulating bacterium that thrives as part of the animal intestinal microflora, playing a crucial role in digestive processes. As a mesophilic microbe, it is well-adapted to moderate temperatures, facilitating optimal growth conditions within the warm environment of the gut. Its fermentation-based metabolism allows Blautia sp. An81 to break down various substrates, primarily utilizing organic compounds derived from dietary fibers and other complex carbohydrates. This capability classifies it as a chemoheterotroph, relying on external organic sources for energy and carbon. Blautia sp. An81 is significant in the gut ecosystem, where it contributes to the fermentation of indigestible polysaccharides, producing short-chain fatty acids (SCFAs) as metabolic byproducts. These SCFAs not only serve as an energy source for intestinal epithelial cells but also play a vital role in maintaining gut health and modulating immune responses. The presence of Blautia sp. An81 may also influence the overall microbial composition and health status of the host, potentially offering protective effects against gastrointestinal diseases and disorders. Ecologically, Blautia sp. An81 exemplifies the intricate interplay between diet, microbiota, and host health, highlighting its importance in the maintenance of a balanced gut ecosystem. Its ability to ferment dietary fibers underscores the benefits of a fiber-rich diet for promoting a diverse and healthy gut microbiome, which is essential for optimal metabolic and immune functions in animals." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. An81 Positive No 1 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 1965659 NFHH00000000.1 Bac0008182 Chlamydia serpentis Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia serpentis 1967782 NZ_LT993739.1 Bac0008183 Chlamydia poikilotherma Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia poikilotherma 1967783 NZ_LS992154.1 Bac0008184 Sulfitobacter sp. D7 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. D7 1968541 NZ_CP020698.1 Bac0008185 gamma proteobacterium symbiont of Ctena orbiculata Pseudomonadati Pseudomonadota Gammaproteobacteria gamma proteobacterium symbiont of Ctena orbiculata 1968598 QBVF00000000.1 Bac0008186 Bacillus sp. SRB_28 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. SRB_28 1969378 NADU00000000.1 Bac0008187 Sulfurovum sp. Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. 1969726 NVVN00000000.1 Bac0008188 Sinobacteraceae bacterium str. THS-13 Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Stagnimonas Stagnimonas aquatica 1969813 RJVO00000000.1 Bac0008189 Kordiimonas sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Kordiimonadales Kordiimonadaceae Kordiimonas Kordiimonas sp. 1970157 PADB00000000.1 Bac0008190 Acidiphilium sp. 37-64-53 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidiphilium Acidiphilium sp. 37-64-53 1970299 NCBU00000000.1 Bac0008191 Halothiobacillus sp. 13-55-115 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Halothiobacillaceae Halothiobacillus Halothiobacillus sp. 13-55-115 1970378 NCKQ00000000.1 Bac0008192 Halothiobacillus sp. 24-54-40 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Halothiobacillaceae Halothiobacillus Halothiobacillus sp. 24-54-40 1970385 NCHR00000000.1 Bac0008193 Microbacterium sp. 13-71-7 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. 13-71-7 1970399 NCKN00000000.1 Bac0008194 Novosphingobium sp. 28-62-57 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. 28-62-57 1970409 NCGO00000000.1 Bac0008195 Novosphingobium sp. 32-60-15 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. 32-60-15 1970410 NCEN00000000.1 Bac0008196 Sphingomonas sp. 32-62-10 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. 32-62-10 1970436 NCEE00000000.1 Bac0008197 Sulfuricurvum sp. 17-40-25 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. 17-40-25 1970439 NCIJ00000000.1 Bac0008198 Thiomonas sp. 13-66-29 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Thiomonas Thiomonas sp. 13-66-29 1970448 NCKO00000000.1 Bac0008199 Thiomonas sp. 15-66-11 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Thiomonas Thiomonas sp. 15-66-11 1970452 NCKA00000000.1 Bac0008200 Acidobacteria bacterium 37-71-11 Pseudomonadati Acidobacteriota Acidobacteria bacterium 37-71-11 1970487 NCBR00000000.1 Bac0008201 Burkholderiales bacterium 39-55-53 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium 39-55-53 1970500 NCJK00000000.1 Bac0008202 Campylobacterales bacterium 16-40-21 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacterales bacterium 16-40-21 1970501 NCGU00000000.1 Bac0008203 Chromatiales bacterium 21-64-14 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiales bacterium 21-64-14 1970504 NCBI00000000.1 Bac0008204 Gammaproteobacteria bacterium 28-57-27 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium 28-57-27 1970513 NCGK00000000.1 Bac0008205 Hydrogenophilales bacterium 16-61-112 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium 16-61-112 1970519 NCHD00000000.1 Bac0008206 Hydrogenophilales bacterium 17-64-34 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium 17-64-34 1970527 NCIL00000000.1 Bac0008207 Hydrogenophilales bacterium 17-64-65 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium 17-64-65 1970528 NCIQ00000000.1 Bac0008208 Hydrogenophilales bacterium 32-62-9 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium 32-62-9 1970531 NCDZ00000000.1 Bac0008209 Methylophilales bacterium 28-44-11 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilales bacterium 28-44-11 1970538 NCGC00000000.1 Bac0008210 Rhizobiales bacterium 32-66-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium 32-66-11 1970549 NCEH00000000.1 Bac0008211 Rhizobiales bacterium 39-66-18 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium 39-66-18 1970553 NCJF00000000.1 Bac0008212 Rhodospirillales bacterium 20-60-12 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillales bacterium 20-60-12 1970565 NCAP00000000.1 Bac0008213 Sphingobacteriia bacterium 28-36-52 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriia bacterium 28-36-52 1970573 NCGN00000000.1 Bac0008214 Sphingomonadales bacterium 32-65-25 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadales bacterium 32-65-25 1970594 NCEU00000000.1 Bac0008215 Thiotrichales bacterium 32-46-8 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichales bacterium 32-46-8 1970604 NCDX00000000.1 Bac0008216 Thiotrichales bacterium 35-46-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichales bacterium 35-46-9 1970606 NCFI00000000.1 Bac0008217 Gilliamella apis Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella apis 1970738 NASK00000000.1 Bac0008218 Vibrio sp. HA2012 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. HA2012 1971595 PFXK00000000.1 Bac0008219 Phytobacter ursingii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Phytobacter ursingii 1972431 NZ_CP011601.1 Bac0008220 Desulfobacteraceae bacterium 4572_88 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacteraceae bacterium 4572_88 1972444 NBMK00000000.1 Bac0008221 Bacillus sp. KbaB1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. KbaB1 1972845 NELX00000000.1 Bac0008222 Agrobacterium rosae str. NCPPB 1650 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium rosae 1972867 NXEJ00000000.1 Bac0008223 Thioclava sp. JM3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava sp. JM3 1973004 NBOB00000000.1 Bac0008224 Gardnerella sp. KA00735 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella sp. KA00735 1973156 NBMV00000000.1 Bac0008225 Nodularia sp. NIES-3585 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nodulariaceae Nodularia Nodularia sp. NIES-3585 1973477 BDUB00000000.1 Bac0008226 Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28 Bacillati Armatimonadota Armatimonadetes bacterium CG07_land_8_20_14_0_80_59_28 1973917 PEWH00000000.1 Bac0008227 Bacteroidetes bacterium CG_4_8_14_3_um_filter_31_14 Pseudomonadati Bacteroidota Bacteroidetes bacterium CG_4_8_14_3_um_filter_31_14 1973921 PFIO00000000.1 Bac0008228 Bacteroidetes bacterium CG18_big_fil_WC_8_21_14_2_50_41_14 Pseudomonadati Bacteroidota Bacteroidetes bacterium CG18_big_fil_WC_8_21_14_2_50_41_14 1973925 PCUL00000000.1 Bac0008229 Chloroflexi bacterium CG08_land_8_20_14_0_20_45_12 Bacillati Chloroflexota Chloroflexi bacterium CG08_land_8_20_14_0_20_45_12 1973943 PEXJ00000000.1 Bac0008230 Comamonadaceae bacterium CG_4_9_14_0_8_um_filter_57_21 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium CG_4_9_14_0_8_um_filter_57_21 1973949 PFSQ00000000.1 Bac0008231 Comamonadaceae bacterium CG_4_9_14_0_8_um_filter_60_18 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium CG_4_9_14_0_8_um_filter_60_18 1973950 PFSR00000000.1 Bac0008232 Comamonadaceae bacterium CG_4_9_14_3_um_filter_60_33 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium CG_4_9_14_3_um_filter_60_33 1973951 PFUD00000000.1 Bac0008233 Comamonadaceae bacterium CG12_big_fil_rev_8_21_14_0_65_59_15 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium CG12_big_fil_rev_8_21_14_0_65_59_15 1973952 PCUV00000000.1 Bac0008234 Cytophagales bacterium CG12_big_fil_rev_8_21_14_0_65_40_12 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagales bacterium CG12_big_fil_rev_8_21_14_0_65_40_12 1973954 PCUU00000000.1 Bac0008235 Deltaproteobacteria bacterium CG_4_10_14_0_8_um_filter_43_12 Deltaproteobacteria Deltaproteobacteria bacterium CG_4_10_14_0_8_um_filter_43_12 1973958 PFMT00000000.1 Bac0008236 Flavobacteriaceae bacterium CG02_land_8_20_14_3_00_34_13 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium CG02_land_8_20_14_3_00_34_13 1973994 PETT00000000.1 Bac0008237 Hydrogenophilales bacterium CG12_big_fil_rev_8_21_14_0_65_61_21 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium CG12_big_fil_rev_8_21_14_0_65_61_21 1974033 PFGT00000000.1 Bac0008238 Ignavibacteria bacterium CG08_land_8_20_14_0_20_37_9 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium CG08_land_8_20_14_0_20_37_9 1974041 PEXS00000000.1 Bac0008239 Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15 1974042 PCTO00000000.1 Bac0008240 Ignavibacteriales bacterium CG_4_9_14_3_um_filter_30_11 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriales bacterium CG_4_9_14_3_um_filter_30_11 1974043 PFVA00000000.1 Bac0008241 Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20 1974047 PCUD00000000.1 Bac0008242 Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_45_15 Pseudomonadati Nitrospinota Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_45_15 1974048 PCWG00000000.1 Bac0008243 Nitrospinae bacterium CG22_combo_CG10-13_8_21_14_all_47_10 Pseudomonadati Nitrospinota Nitrospinae bacterium CG22_combo_CG10-13_8_21_14_all_47_10 1974050 PCTK00000000.1 Bac0008244 Nitrospirae bacterium CG_4_10_14_0_8_um_filter_41_23 Pseudomonadati Nitrospirota Nitrospirae bacterium CG_4_10_14_0_8_um_filter_41_23 1974051 PFLU00000000.1 Bac0008245 Nitrospirae bacterium CG_4_9_14_0_8_um_filter_70_14 Pseudomonadati Nitrospirota Nitrospirae bacterium CG_4_9_14_0_8_um_filter_70_14 1974059 PFTE00000000.1 Bac0008246 Nitrospirae bacterium CG08_land_8_20_14_0_20_52_24 Pseudomonadati Nitrospirota Nitrospirae bacterium CG08_land_8_20_14_0_20_52_24 1974068 PEYF00000000.1 Bac0008247 Nitrospirae bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_9 Pseudomonadati Nitrospirota Nitrospirae bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_9 1974070 PFFA00000000.1 Bac0008248 Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 1974093 PFJE00000000.1 Bac0008249 Syntrophobacterales bacterium CG03_land_8_20_14_0_80_58_14 Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacterales bacterium CG03_land_8_20_14_0_80_58_14 1974100 PEVF00000000.1 Bac0008250 Zetaproteobacteria bacterium CG_4_10_14_3_um_filter_54_28 Pseudomonadati Pseudomonadota Candidatius Mariprofundia Zetaproteobacteria bacterium CG_4_10_14_3_um_filter_54_28 1974114 PFIX00000000.1 Bac0008251 Candidatus Aenigmarchaeota archaeon CG_4_10_14_3_um_filter_37_21 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon CG_4_10_14_3_um_filter_37_21 1974379 PFKR00000000.1 Bac0008252 Candidatus Aenigmarchaeota archaeon CG_4_8_14_3_um_filter_37_24 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon CG_4_8_14_3_um_filter_37_24 1974380 PFIV00000000.1 Bac0008253 Candidatus Aenigmarchaeota archaeon CG_4_9_14_3_um_filter_37_18 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon CG_4_9_14_3_um_filter_37_18 1974381 PFTQ00000000.1 Bac0008254 Candidatus Aenigmarchaeota archaeon CG01_land_8_20_14_3_00_37_9 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon CG01_land_8_20_14_3_00_37_9 1974382 PETH00000000.1 Bac0008255 Candidatus Diapherotrites archaeon CG_4_10_14_0_2_um_filter_31_5 Nanobdellati Candidatus Iainarchaeota Candidatus Diapherotrites archaeon CG_4_10_14_0_2_um_filter_31_5 1974402 PFQC00000000.1 Bac0008256 Candidatus Diapherotrites archaeon CG08_land_8_20_14_0_20_30_16 Nanobdellati Candidatus Iainarchaeota Candidatus Diapherotrites archaeon CG08_land_8_20_14_0_20_30_16 1974403 PEXK00000000.1 Bac0008257 Candidatus Diapherotrites archaeon CG09_land_8_20_14_0_10_32_12 Nanobdellati Candidatus Iainarchaeota Candidatus Diapherotrites archaeon CG09_land_8_20_14_0_10_32_12 1974405 PEYZ00000000.1 Bac0008258 Candidatus Diapherotrites archaeon CG11_big_fil_rev_8_21_14_0_20_37_9 Nanobdellati Candidatus Iainarchaeota Candidatus Diapherotrites archaeon CG11_big_fil_rev_8_21_14_0_20_37_9 1974407 PCWY00000000.1 Bac0008259 Candidatus Micrarchaeota archaeon CG_4_10_14_0_2_um_filter_55_9 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG_4_10_14_0_2_um_filter_55_9 1974409 PFPG00000000.1 Bac0008260 Candidatus Micrarchaeota archaeon CG_4_10_14_0_8_um_filter_60_7 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG_4_10_14_0_8_um_filter_60_7 1974411 PFLY00000000.1 Bac0008261 Candidatus Micrarchaeota archaeon CG09_land_8_20_14_0_10_60_16 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG09_land_8_20_14_0_10_60_16 1974416 PEZC00000000.1 Bac0008262 Candidatus Micrarchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_45_29 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_45_29 1974417 PFCD00000000.1 Bac0008263 Candidatus Micrarchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_54_18 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_54_18 1974418 PFCE00000000.1 Bac0008264 Candidatus Micrarchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_60_32 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_60_32 1974420 PFCF00000000.1 Bac0008265 Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_42 Nanobdellati Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_42 1974442 PFCZ00000000.1 Bac0008266 Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_35_219 Nanobdellati Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_35_219 1974446 PFDD00000000.1 Bac0008267 Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_30_7 Nanobdellati Candidatus Woesearchaeota Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_30_7 1974456 PCYH00000000.1 Bac0008268 Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_47_5 Nanobdellati Candidatus Woesearchaeota Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_47_5 1974467 PCXW00000000.1 Bac0008269 Candidatus Omnitrophica bacterium CG_4_10_14_0_2_um_filter_44_9 Pseudomonadati Candidatus Omnitrophota Candidatus Omnitrophica bacterium CG_4_10_14_0_2_um_filter_44_9 1974733 PFOV00000000.1 Bac0008270 Candidatus Omnitrophica bacterium CG_4_9_14_0_2_um_filter_42_8 Pseudomonadati Candidatus Omnitrophota Candidatus Omnitrophica bacterium CG_4_9_14_0_2_um_filter_42_8 1974737 PFRM00000000.1 Bac0008271 Candidatus Omnitrophica bacterium CG22_combo_CG10-13_8_21_14_all_43_16 Pseudomonadati Candidatus Omnitrophota Candidatus Omnitrophica bacterium CG22_combo_CG10-13_8_21_14_all_43_16 1974755 PCTH00000000.1 Bac0008272 Candidatus Sherwoodlollariibacterium unditelluris Pseudomonadati Candidatus Omnitrophota Candidatus Sherwoodlollariibacterium Candidatus Sherwoodlollariibacterium unditelluris 1974757 PCRK00000000.1 Bac0008273 Candidatus Peregrinibacteria bacterium CG_4_10_14_0_2_um_filter_38_24 Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium CG_4_10_14_0_2_um_filter_38_24 1974774 PFOM00000000.1 Bac0008274 Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_19 Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_19 1974784 PFDP00000000.1 Bac0008275 Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_55_24 Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_55_24 1974791 PFDV00000000.1 Bac0008276 Shewanella sp. CG_4_10_14_3_um_filter_42_91 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. CG_4_10_14_3_um_filter_42_91 1975535 PFJF00000000.1 Bac0008277 Hadesarchaea archaeon CG08_land_8_20_14_0_20_51_8 Methanobacteriati Candidatus Hadarchaeota Candidatus Hadarchaeia Hadesarchaea archaeon CG08_land_8_20_14_0_20_51_8 1975561 PEXR00000000.1 Bac0008278 Pantoea sp. FDAARGOS_194 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. FDAARGOS_194 1975707 NWFM00000000.2 Bac0008279 Pseudomonadota bacterium Pseudomonadati Pseudomonadota Pseudomonadota bacterium 1977087 PDPE00000000.1 Bac0008280 Proteobacteria bacterium Pseudomonadati Pseudomonadota Pseudomonadota bacterium 1977087 QGUX00000000.2 Bac0008281 Paenibacillus xerothermodurans str. ATCC 27380 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus xerothermodurans 1977292 NHRJ00000000.2 Bac0008282 Acinetobacter sp. ANC 4648 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4648 1977875 NEGI00000000.1 Bac0008283 Acinetobacter sp. ANC 5054 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 5054 1977877 NEGG00000000.1 Bac0008284 Acinetobacter sp. ANC 4169 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4169 1977879 NEGE00000000.1 Bac0008285 Limnohabitans sp. Jir72 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. Jir72 1977909 NESC00000000.1 Bac0008286 Candidatus Marsarchaeota G1 archaeon OSP_B Thermoproteati Thermoproteota Candidatus Marsarchaeota G1 archaeon OSP_B 1978153 NEXA00000000.1 Bac0008287 Candidatus Marsarchaeota G2 archaeon BE_D Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon BE_D 1978158 NEXF00000000.1 Bac0008288 Candidatus Marsarchaeota G2 archaeon ECH_B_2 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_2 1978160 NEXH00000000.1 Bac0008289 Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-C16 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-C16 1978163 NEXK00000000.1 Bac0008290 Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-E12 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-E12 1978164 NEXL00000000.1 Bac0008291 Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-G16 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-G16 1978167 NEXO00000000.1 Bac0008292 Caulobacteraceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacteraceae bacterium 1978230 SDZP00000000.1 Bac0008293 Acidobacteriota bacterium Pseudomonadati Acidobacteriota Acidobacteriota bacterium 1978231 PDRR00000000.1 Bac0008294 Acidobacteria bacterium Pseudomonadati Acidobacteriota Acidobacteriota bacterium 1978231 QGVF00000000.2 Bac0008295 Petrimonas sp. IBARAKI Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Petrimonas Petrimonas sp. IBARAKI 1978337 AP018040.2 Bac0008296 Lysinibacillus endophyticus str. DSM 100506 "Lysinibacillus endophyticus strain DSM 100506 is a rod-shaped, sporulating bacterium characterized by its arrangement in chains and its classification as a chemoheterotroph, deriving energy from organic compounds. This strain is isolated from soil environments, indicating its potential role in the nutrient cycling processes within terrestrial ecosystems. ↵↵The sporulation capability of L. endophyticus suggests a resilience to environmental stresses, which is common in soil-dwelling microbes that must withstand fluctuations in moisture, temperature, and nutrient availability. Its chain formation may enhance its survival by facilitating cell-to-cell interactions, potentially influencing its ecological functions and interactions with other soil microorganisms.↵↵Given its habitat and traits, L. endophyticus could play a significant role in the soil microbiome, contributing to organic matter decomposition and nutrient mobilization. This could have implications for plant health and soil fertility, highlighting the importance of such bacteria in agroecosystems. Further research could elucidate its specific interactions in soil microbiomes and its potential applications in sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Ureibacillus Ureibacillus endophyticus Rod Yes 1 Chemoheterotroph Mesophilic Soil Chains Sporulating 1978490 RBZN00000000.1 Bac0008297 Salinicola sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Salinicola Salinicola sp. 1978524 NZNW00000000.1 Bac0008298 Sphingomonadales bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadales bacterium 1978525 SEFY00000000.1 Bac0008299 Proteobacteria bacterium ST_bin12 Pseudomonadati Pseudomonadota Proteobacteria bacterium ST_bin12 1978760 MSXP00000000.1 Bac0008300 Proteobacteria bacterium ST_bin13 Pseudomonadati Pseudomonadota Proteobacteria bacterium ST_bin13 1978761 MSXQ00000000.1 Bac0008301 Nitrospira sp. ST-bin4 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. ST-bin4 1978764 MSXM00000000.1 Bac0008302 Nitrospira sp. ST-bin5 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. ST-bin5 1978765 MSXN00000000.1 Bac0008303 Parvularcula sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Parvularculales Parvularculaceae Parvularcula Parvularcula sp. 1979207 PAIP00000000.1 Bac0008304 Sphingomonas crocodyli Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas crocodyli 1979270 SACN00000000.1 Bac0008305 Campylobacter sp. P255 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. P255 1979368 NREN00000000.1 Bac0008306 Flavobacterium sp. AJR Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. AJR 1979369 NCWQ00000000.1 Bac0008307 Pelagibaca sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pelagibaca Pelagibaca sp. 1979400 NYZS00000000.1 Bac0008308 Rothia sp. Olga Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia sp. Olga 1979525 NDFM00000000.1 Bac0008309 Corynebacterium kefirresidentii "Corynebacterium kefirresidentii is a Gram-positive, nonsporulating bacillus that typically appears in chains, showcasing a characteristic arrangement common to many members of the Corynebacteriaceae family. This microbe is a mesophilic organism, thriving in moderate temperature ranges, and is particularly well-adapted to a variety of habitats, including dairy environments where it is often found in kefir, a fermented milk product. As a chemoheterotroph, C. kefirresidentii derives its energy from organic compounds, playing a significant role in the fermentation processes that contribute to the flavor and texture of kefir. In addition to its presence in dairy products, C. kefirresidentii may be involved in symbiotic relationships within microbial communities, such as those found in the gut microbiome of various animals, including humans. This suggests that the microbe may have beneficial effects on digestion or host health through its metabolic activities.A unique ecological insight into C. kefirresidentii lies in its potential probiotic properties. It not only contributes to the fermentation of kefir but may also interact with other microbial species to enhance gut health and inhibit the growth of pathogenic bacteria. This highlights the importance of C. kefirresidentii in both food production and its possible role in promoting a balanced microbiota, demonstrating how microbial interactions can influence health and nutrition." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium kefirresidentii Positive Rod No 1 Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 1979527 NGUZ00000000.1 Bac0008310 Streptococcus sp. KR Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. KR 1979528 NGVM00000000.1 Bac0008311 Microcystis aeruginosa Sj Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1979544 BDSG00000000.1 Bac0008312 Cellulosimicrobium sp. TH-20 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium sp. TH-20 1980001 NZ_CP020857.1 Bac0008313 Rhizobium sp. NXC14 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. NXC14 1981173 NZ_CP021032.1 Bac0008314 Aerococcus sp. 1KP-2016 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus sp. 1KP-2016 1981982 NEEY00000000.1 Bac0008315 Verrucomicrobiae bacterium AMD-G2 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiia bacterium AMD-G2 1982328 NEUM00000000.1 Bac0008316 Streptomyces sp. CS159 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS159 1982762 NEVD00000000.1 Bac0008317 Sphingobium sp. LB126 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. LB126 1983755 NETV00000000.1 Bac0008318 Nitrospira sp. CG24D Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CG24D 1985130 NEWQ00000000.2 Bac0008319 Nitrospira sp. CG24C Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CG24C 1985131 NEWR00000000.2 Bac0008320 Nitrospira sp. CG24B Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CG24B 1985132 NEWS00000000.2 Bac0008321 Hydrogenophaga sp. IBVHS1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. IBVHS1 1985169 NFUU00000000.1 Bac0008322 Sphingomonas sp. IBVSS1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. IBVSS1 1985171 NFUS00000000.1 Bac0008323 Sphingomonas sp. IBVSS2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. IBVSS2 1985172 NFUR00000000.1 Bac0008324 Pseudomonas sp. 1239 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 1239 1985343 NFSA00000000.1 Bac0008325 Sulfuriferula sp. AH1 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sulfuricellaceae Sulfuriferula Sulfuriferula sp. AH1 1985873 NZ_CP021138.1 Bac0008326 Escherichia sp. ESNIH1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. ESNIH1 1985876 PQKR00000000.1 Bac0008327 Sphingomonas sp. ABOLG Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. ABOLG 1985880 QQWW00000000.1 Bac0008328 Desulfobulbus oralis str. ORNL Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oralis 1986146 NZ_CP021255.1 Bac0008329 SAR116 cluster bacterium MED-G04 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Puniceispirillales SAR116 cluster bacterium MED-G04 1986233 NTKX00000000.1 Bac0008330 OM182 bacterium MED-G28 Pseudomonadati Pseudomonadota Gammaproteobacteria OM182 bacterium MED-G28 1986256 NTJZ00000000.1 Bac0008331 Alteromonas sp. TMED35 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. TMED35 1986603 NHCO00000000.1 Bac0008332 Hyphomonas sp. TMED17 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas sp. TMED17 1986605 NHBW00000000.1 Bac0008333 Allomuricauda sp. TMED12 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Allomuricauda Allomuricauda sp. TMED12 1986608 NHBR00000000.2 Bac0008334 Owenweeksia sp. TMED14 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Owenweeksiaceae Owenweeksia Owenweeksia sp. TMED14 1986609 NHBT00000000.1 Bac0008335 Pelagibacteraceae bacterium TMED13 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Pelagibacteraceae bacterium TMED13 1986627 NHBS00000000.1 Bac0008336 Candidatus Puniceispirillum sp. TMED52 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Puniceispirillales Candidatus Puniceispirillaceae Candidatus Puniceispirillum Candidatus Puniceispirillum sp. TMED52 1986639 NHDF00000000.1 Bac0008337 Flavobacteriales bacterium TMED191 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriales bacterium TMED191 1986723 NHIO00000000.2 Bac0008338 Crocinitomicaceae bacterium TMED209 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Crocinitomicaceae bacterium TMED209 1986724 NHJG00000000.2 Bac0008339 Hyphomonadaceae bacterium TMED5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonadaceae bacterium TMED5 1986776 NHBK00000000.1 Bac0008340 Pseudonocardia sp. N23 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. N23 1987376 BEGX00000000.1 Bac0008341 Cellvibrio sp. PSBB006 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrio Cellvibrio sp. PSBB006 1987723 NZ_CP021382.1 Bac0008342 Rhodococcus oxybenzonivorans Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus oxybenzonivorans 1990687 NZ_CP021354.1 Bac0008343 Companilactobacillus nuruki str. SYF10-1a Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus nuruki 1993540 NIPR00000000.1 Bac0008344 Enterobacterales bacterium "Currently, very little is known about the microbe 'Enterobacterales bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacterales bacterium 1993870 BHES00000000.1 Bac0008345 Porphyrobacter sp. CACIAM 03H1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. CACIAM 03H1 2003315 NZ_CP021378.1 Bac0008346 Maritimibacter sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Maritimibacter Maritimibacter sp. 2003363 NZNT00000000.1 Bac0008347 Salinivibrio sp. YCSC6 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Salinivibrio Salinivibrio sp. YCSC6 2003370 NHNL00000000.1 Bac0008348 Paenibacillaceae bacterium "Currently, very little is known about the microbe 'Paenibacillaceae bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillaceae bacterium 2003592 QEVX00000000.1 Bac0008349 Acinetobacter sp. WCHA45 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WCHA45 2004644 NZ_CP028557.1 Bac0008350 Acinetobacter sp. WCHA55 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WCHA55 2004646 NZ_CP032281.1 Bac0008351 Acinetobacter sp. WCHAc010052 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WCHAc010052 2004647 NZ_CP032141.1 Bac0008352 Acinetobacter chinensis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter chinensis 2004650 NZ_CP032131.1 Bac0008353 Helicobacter monodelphidis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter monodelphidis 2004995 NHYN00000000.1 Bac0008354 Helicobacter sp. 10-6591 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 10-6591 2004998 NHYK00000000.1 Bac0008355 Pseudomonas sp. RU47 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RU47 2005388 NZ_CP022411.1 Bac0008356 Tolypothrix sp. NIES-4075 Bacillati Cyanobacteriota Cyanophyceae Nostocales Tolypothrichaceae Tolypothrix Tolypothrix sp. NIES-4075 2005459 BDUC00000000.1 Bac0008357 Calothrix sp. NIES-4101 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. NIES-4101 2005461 AP018275.1 Bac0008358 Calothrix sp. NIES-3974 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. NIES-3974 2005462 NZ_AP018254.1 Bac0008359 Nostoc commune NIES-4072 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc commune 2005467 BDUD00000000.1 Bac0008360 bacterium BMS3Abin03 bacterium BMS3Abin03 2005711 BDSV00000000.1 Bac0008361 bacterium BMS3Abin08 bacterium BMS3Abin08 2005716 BDTA00000000.1 Bac0008362 bacterium BMS3Bbin01 bacterium BMS3Bbin01 2005724 BDTK00000000.1 Bac0008363 bacterium BMS3Bbin09 bacterium BMS3Bbin09 2005732 BDTS00000000.1 Bac0008364 bacterium BMS3Bbin12 bacterium BMS3Bbin12 2005735 BDTV00000000.1 Bac0008365 Thauera sinica Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera sinica 2005884 NZ_CP023439.1 Bac0008366 Pseudomonas sp. DrBHI1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. DrBHI1 2006091 NIBE00000000.1 Bac0008367 Acinetobacter piscicola Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter piscicola 2006115 SEUF00000000.1 Bac0008368 Opitutaceae bacterium Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutaceae bacterium 2006848 PAUB00000000.1 Bac0008369 Vibrio sp. T9 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. T9 2007196 NIGY00000000.1 Bac0008370 Francisella adeliensis str. FDC440 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella adeliensis 2007306 NZ_CP021781.1 Bac0008371 Thermococcus sp. 5-4 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 5-4 2008440 NZ_CP021848.1 Bac0008372 Pigmentiphaga sp. NML080357 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pigmentiphaga Pigmentiphaga sp. NML080357 2008675 NINW00000000.1 Bac0008373 Sagittula sp. P11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sagittula Sagittula sp. P11 2009329 NZ_CP021915.1 Bac0008374 Pseudomonas laurylsulfatiphila str. AP3_16 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas laurylsulfatiphila 2011015 NIRS00000000.1 Bac0008375 Muricaecibacterium torontonense "Muricaecibacterium torontonense is a Gram-positive, nonsporulating bacterium classified within the animal intestinal microflora, exhibiting chemoheterotrophic metabolism. This microbe is predominantly found in the gastrointestinal tracts of various animals, where it plays a role in the complex interactions of the gut microbiome. As a chemoheterotroph, M. torontonense relies on organic compounds for energy and carbon, utilizing substrates derived from the host diet or microbial byproducts to sustain its metabolic activities.↵↵The presence of M. torontonense in the intestinal environment suggests potential contributions to nutrient processing and microbial ecology within the gut. Although specific interactions with its host or other gut microorganisms have yet to be detailed, the mutualistic relationships typically observed among gut bacteria indicate that M. torontonense may participate in metabolic pathways relevant to digestion or immune modulation. Further research into this organism could elucidate its specific roles in maintaining intestinal health and stability, as well as its interactions with other members of the gut microbiota. Understanding these dynamics could provide insights into the broader implications of gut microbial diversity in animal health and nutrition." Bacillati Actinomycetota Coriobacteriia Coriobacteriales Atopobiaceae Muricaecibacterium Muricaecibacterium torontonense Positive No 1 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 2011094 SRYE00000000.1 Bac0008376 Aliarcobacter vitoriensis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter vitoriensis 2011099 PDKB00000000.1 Bac0008377 Candidatus Methanophagaceae archaeon ex4572_4 Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagaceae Candidatus Methanophagaceae archaeon ex4572_4 2011131 NJEM00000000.1 Bac0008378 Candidatus Aenigmarchaeota archaeon ex4484_14 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon ex4484_14 2012502 NJEI00000000.1 Bac0008379 Candidatus Aenigmarchaeota archaeon ex4484_52 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon ex4484_52 2012504 NJDR00000000.1 Bac0008380 Candidatus Altarchaeales archaeon ex4484_43 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon ex4484_43 2012507 NJDS00000000.1 Bac0008381 Candidatus Altarchaeales archaeon ex4484_96 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon ex4484_96 2012508 NJDH00000000.1 Bac0008382 Candidatus Bathyarchaeota archaeon ex4484_205 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon ex4484_205 2012510 NJEE00000000.1 Bac0008383 Candidatus Bathyarchaeota archaeon ex4484_231 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon ex4484_231 2012512 NJDZ00000000.1 Bac0008384 Desulfurococcales archaeon ex4484_217_1 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcales archaeon ex4484_217_1 2012518 NJED00000000.1 Bac0008385 Desulfurococcales archaeon ex4484_217_2 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcales archaeon ex4484_217_2 2012519 NJEC00000000.1 Bac0008386 Desulfurococcales archaeon ex4484_58 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcales archaeon ex4484_58 2012521 NJDP00000000.1 Bac0008387 Chloracidobacterium sp. CP2_5A Pseudomonadati Acidobacteriota Blastocatellia Chloracidobacteriales Chloracidobacteriaceae Chloracidobacterium Chloracidobacterium sp. CP2_5A 2012633 NKPT00000000.1 Bac0008388 Bifidobacterium sp. N4G05 "Currently, very little is known about the microbe 'Bifidobacterium sp. N4G05'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. N4G05 Positive 2013020 NJNQ00000000.1 Bac0008389 Bifidobacterium sp. N5G01 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. N5G01 2013021 NJNP00000000.1 Bac0008390 Alphaproteobacteria bacterium MarineAlpha3_Bin2 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MarineAlpha3_Bin2 2013068 PTLL00000000.1 Bac0008391 Alphaproteobacteria bacterium MarineAlpha3_Bin7 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MarineAlpha3_Bin7 2013073 PTLG00000000.1 Bac0008392 Alphaproteobacteria bacterium MarineAlpha9_Bin6 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MarineAlpha9_Bin6 2013101 PTKE00000000.1 Bac0008393 Alphaproteobacteria bacterium MarineAlpha11_Bin1 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MarineAlpha11_Bin1 2013106 PTJZ00000000.1 Bac0008394 Pseudomonas sp. K2I15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. K2I15 2013577 NIXO00000000.1 Bac0008395 Actinobacteria bacterium HGW-Actinobacteria-2 Bacillati Actinomycetota Actinobacteria bacterium HGW-Actinobacteria-2 2013647 PHEY00000000.1 Bac0008396 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-1 2013655 PHEQ00000000.1 Bac0008397 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 2013657 PHEO00000000.1 Bac0008398 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-17 2013663 PHEI00000000.1 Bac0008399 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-4 2013667 PHEE00000000.1 Bac0008400 Candidatus Altarchaeales archaeon HGW-Altarchaeales s-1 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon HGW-Altarchaeales s-1 2013673 PHDY00000000.1 Bac0008401 Candidatus Altarchaeales archaeon HGW-Altarchaeales-3 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon HGW-Altarchaeales-3 2013675 PHDW00000000.1 Bac0008402 Bacteroidetes bacterium HGW-Bacteroidetes-1 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-1 2013677 PHDU00000000.1 Bac0008403 Bacteroidetes bacterium HGW-Bacteroidetes-11 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-11 2013679 PHDS00000000.1 Bac0008404 Bacteroidetes bacterium HGW-Bacteroidetes-13 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-13 2013681 PHDQ00000000.1 Bac0008405 Bacteroidetes bacterium HGW-Bacteroidetes-2 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-2 2013688 PHDJ00000000.1 Bac0008406 Bacteroidetes bacterium HGW-Bacteroidetes-3 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-3 2013693 PHDE00000000.1 Bac0008407 Betaproteobacteria bacterium HGW-Betaproteobacteria-10 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-10 2013701 PHCW00000000.1 Bac0008408 Betaproteobacteria bacterium HGW-Betaproteobacteria-11 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-11 2013702 PHCV00000000.1 Bac0008409 Betaproteobacteria bacterium HGW-Betaproteobacteria-15 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-15 2013706 PHCR00000000.1 Bac0008410 Betaproteobacteria bacterium HGW-Betaproteobacteria-20 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-20 2013712 PHCL00000000.1 Bac0008411 Betaproteobacteria bacterium HGW-Betaproteobacteria-22 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-22 2013714 PHCJ00000000.1 Bac0008412 Betaproteobacteria bacterium HGW-Betaproteobacteria-3 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-3 2013715 PHCI00000000.1 Bac0008413 Chloroflexi bacterium HGW-Chloroflexi-1 Bacillati Chloroflexota Chloroflexi bacterium HGW-Chloroflexi-1 2013723 PHCA00000000.1 Bac0008414 Chloroflexi bacterium HGW-Chloroflexi-10 Bacillati Chloroflexota Chloroflexi bacterium HGW-Chloroflexi-10 2013724 PHBZ00000000.1 Bac0008415 Chloroflexi bacterium HGW-Chloroflexi-5 Bacillati Chloroflexota Chloroflexi bacterium HGW-Chloroflexi-5 2013728 PHBV00000000.1 Bac0008416 Chloroflexi bacterium HGW-Chloroflexi-9 Bacillati Chloroflexota Chloroflexi bacterium HGW-Chloroflexi-9 2013732 PHBR00000000.1 Bac0008417 Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-3 Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-3 2013735 PHBO00000000.1 Bac0008418 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-12 Deltaproteobacteria Deltaproteobacteria bacterium HGW-Deltaproteobacteria-12 2013739 PHBK00000000.1 Bac0008419 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15 Deltaproteobacteria Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15 2013742 PHBH00000000.1 Bac0008420 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-18 Deltaproteobacteria Deltaproteobacteria bacterium HGW-Deltaproteobacteria-18 2013745 PHBE00000000.1 Bac0008421 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19 Deltaproteobacteria Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19 2013746 PHBD00000000.1 Bac0008422 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 Deltaproteobacteria Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 2013747 PHBC00000000.1 Bac0008423 Elusimicrobia bacterium HGW-Elusimicrobia-3 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium HGW-Elusimicrobia-3 2013765 PHAL00000000.1 Bac0008424 Firmicutes bacterium HGW-Firmicutes-11 Bacillati Bacillota Firmicutes bacterium HGW-Firmicutes-11 2013772 PHAE00000000.1 Bac0008425 Firmicutes bacterium HGW-Firmicutes-14 Bacillati Bacillota Firmicutes bacterium HGW-Firmicutes-14 2013775 PHAB00000000.1 Bac0008426 Firmicutes bacterium HGW-Firmicutes-8 Bacillati Bacillota Firmicutes bacterium HGW-Firmicutes-8 2013789 PGZN00000000.1 Bac0008427 Firmicutes bacterium HGW-Firmicutes-9 Bacillati Bacillota Firmicutes bacterium HGW-Firmicutes-9 2013790 PGZM00000000.1 Bac0008428 Ignavibacteriae bacterium HGW-Ignavibacteriae-2 Pseudomonadati Ignavibacteriota Ignavibacteriae bacterium HGW-Ignavibacteriae-2 2013809 PGYT00000000.1 Bac0008429 Ignavibacteriae bacterium HGW-Ignavibacteriae-3 Pseudomonadati Ignavibacteriota Ignavibacteriae bacterium HGW-Ignavibacteriae-3 2013810 PGYS00000000.1 Bac0008430 Ignavibacteriae bacterium HGW-Ignavibacteriae-4 Pseudomonadati Ignavibacteriota Ignavibacteriae bacterium HGW-Ignavibacteriae-4 2013811 PGYR00000000.1 Bac0008431 Methanomicrobiales archaeon HGW-Methanomicrobiales-2 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiales archaeon HGW-Methanomicrobiales-2 2013818 PGYL00000000.1 Bac0008432 Methanomicrobiales archaeon HGW-Methanomicrobiales-3 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiales archaeon HGW-Methanomicrobiales-3 2013819 PGYK00000000.1 Bac0008433 Methanomicrobiales archaeon HGW-Methanomicrobiales-5 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiales archaeon HGW-Methanomicrobiales-5 2013821 PGYI00000000.1 Bac0008434 Candidatus Methanoperedentaceae archaeon HGW-Methanoperedenaceae-1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedentaceae archaeon HGW-Methanoperedenaceae-1 2013824 PGYG00000000.1 Bac0008435 Nitrospira bacterium HGW-Nitrospira-1 Pseudomonadati Nitrospirota Nitrospiria Nitrospira bacterium HGW-Nitrospira-1 2013825 PGYF00000000.1 Bac0008436 Candidatus Riflebacteria bacterium HGW-Riflebacteria-1 Candidatus Rifleibacteriota Candidatus Riflebacteria bacterium HGW-Riflebacteria-1 2013829 PGYB00000000.1 Bac0008437 Candidatus Riflebacteria bacterium HGW-Riflebacteria-2 Candidatus Rifleibacteriota Candidatus Riflebacteria bacterium HGW-Riflebacteria-2 2013830 PGYA00000000.1 Bac0008438 Spirochaetae bacterium HGW-Spirochaetae-5 Pseudomonadati Spirochaetota Spirochaetae bacterium HGW-Spirochaetae-5 2013837 PGXT00000000.1 Bac0008439 Synergistetes bacterium HGW-Synergistetes-1 Thermotogati Synergistota Synergistetes bacterium HGW-Synergistetes-1 2013842 PGXO00000000.1 Bac0008440 Bacillus sp. FJAT-42376 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-42376 2014076 NZ_CP033906.1 Bac0008441 Candidatus Altarchaeum sp. CG03_land_8_20_14_0_80_32_618 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeaceae Candidatus Altarchaeum Candidatus Altarchaeum sp. CG03_land_8_20_14_0_80_32_618 2014241 PEUK00000000.1 Bac0008442 Candidatus Altarchaeum sp. CG12_big_fil_rev_8_21_14_0_65_33_22 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeaceae Candidatus Altarchaeum Candidatus Altarchaeum sp. CG12_big_fil_rev_8_21_14_0_65_33_22 2014242 PCUZ00000000.1 Bac0008443 Candidatus Kerfeldbacteria bacterium CG08_land_8_20_14_0_20_40_16 Candidatus Kerfeldiibacteriota Candidatus Kerfeldbacteria bacterium CG08_land_8_20_14_0_20_40_16 2014244 PEXU00000000.1 Bac0008444 Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10 Candidatus Kerfeldiibacteriota Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10 2014248 PFMD00000000.1 Bac0008445 Candidatus Saganbacteria bacterium CG08_land_8_20_14_0_20_45_16 Bacillati Candidatus Saganbacteria bacterium CG08_land_8_20_14_0_20_45_16 2014293 PEYM00000000.1 Bac0008446 Halomonas sp. N3-2A Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. N3-2A 2014541 NZ_CP022286.1 Bac0008447 Vibrio tarriae Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tarriae 2014742 QKKN00000000.1 Bac0008448 Mesorhizobium wenxiniae str. WYCCWR 10195 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium wenxiniae 2014805 NPKH00000000.1 Bac0008449 Tengunoibacter tsumagoiensis Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Dictyobacteraceae Tengunoibacter Tengunoibacter tsumagoiensis 2014871 BIFR00000000.1 Bac0008450 Dictyobacter alpinus Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Dictyobacteraceae Dictyobacter Dictyobacter alpinus 2014873 BIFT00000000.1 Bac0008451 Herbaspirillum robiniae str. HZ10 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum robiniae 2014887 NJGU00000000.1 Bac0008452 Chryseobacterium sp. T16E-39 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. T16E-39 2015076 NZ_CP022282.1 Bac0008453 Burkholderia sp. AU27893 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. AU27893 2015351 NKFD00000000.1 Bac0008454 Flavobacterium sp. BFFFF2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. BFFFF2 2015558 NKJD00000000.1 Bac0008455 Novosphingobium sp. PASSN1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. PASSN1 2015561 NKIS00000000.1 Bac0008456 Burkholderiales bacterium PBB1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium PBB1 2015563 NKIN00000000.1 Bac0008457 Burkholderiales bacterium PBB2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium PBB2 2015564 NKIM00000000.1 Bac0008458 Chitinophagaceae bacterium BSSC1 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophagaceae bacterium BSSC1 2015574 NKJC00000000.1 Bac0008459 Verrucomicrobiales bacterium VVV1 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiales bacterium VVV1 2015575 NKJB00000000.1 Bac0008460 Bradyrhizobiaceae bacterium PARB1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobiaceae bacterium PARB1 2015576 NKIY00000000.1 Bac0008461 Rhizobiales bacterium PAR1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium PAR1 2015577 NKIW00000000.1 Bac0008462 Sphingomonadaceae bacterium PASS1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonadaceae bacterium PASS1 2015579 NKIR00000000.1 Bac0008463 Comamonadaceae bacterium PBBC1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium PBBC1 2015580 NKIP00000000.1 Bac0008464 Comamonadaceae bacterium PBBC2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium PBBC2 2015581 NKIO00000000.1 Bac0008465 Sulfurovum sp. UBA12169 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. UBA12169 2015906 DLUH00000000.1 Bac0008466 Parenemella sanctibonifatiensis Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Parenemella Parenemella sanctibonifatiensis 2016505 NMVJ00000000.1 Bac0008467 Raineya orbicola str. SPSPC-11 Pseudomonadati Bacteroidota Cytophagia Cytophagales Raineyaceae Raineya Raineya orbicola 2016530 NKXO00000000.1 Bac0008468 Candidatus Sulfobium mesophilum Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Candidatus Sulfobium Candidatus Sulfobium mesophilum 2016548 OUUY00000000.1 Bac0008469 Thalassococcus sp. S3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Thalassococcus Thalassococcus sp. S3 2017482 NZ_CP022304.1 Bac0008470 Virgibacillus phasianinus Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus phasianinus 2017483 NZ_CP022315.1 Bac0008471 Brachybacterium avium Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium avium 2017485 NZ_CP022316.1 Bac0008472 Sphingobium sp. D43FB Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. D43FB 2017595 NMUA00000000.1 Bac0008473 Prosthecochloris marina str. V1 Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris marina 2017681 PDNZ00000000.1 Bac0008474 Halalkalibacillus sediminis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halalkalibacillus Halalkalibacillus sediminis 2018042 PJNH00000000.1 Bac0008475 Roseomonas sp. FDAARGOS_362 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Roseomonas sp. FDAARGOS_362 2018065 NZ_CP024588.1 Bac0008476 Shewanella bicestrii str. JAB-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella bicestrii 2018305 NZ_CP022360.1 Bac0008477 Acinetobacter sp. YT-02 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. YT-02 2018564 NOZT00000000.1 Bac0008478 Fischerella muscicola CCMEE 5323 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella muscicola 2019572 NRQW00000000.1 Bac0008479 Fischerella thermalis CCMEE 5273 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella thermalis 2019663 NMQB00000000.1 Bac0008480 Rhizobium sp. CIAT894 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. CIAT894 2020312 NZ_CP020950.1 Bac0008481 Streptomyces sp. CB01201 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB01201 2020324 NNBJ00000000.1 Bac0008482 Streptomyces sp. CB02120-2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02120-2 2020327 NNBM00000000.1 Bac0008483 Streptomyces sp. TSRI0384-2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TSRI0384-2 2020331 NOWW00000000.1 Bac0008484 Arthrobacter sp. YN Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. YN 2020486 NZ_CP022436.1 Bac0008485 Tetzosporium hominis str. VT-49 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Tetzosporium Tetzosporium hominis 2020506 NOKQ00000000.1 Bac0008486 Ponticaulis sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Ponticaulis Ponticaulis sp. 2020902 NZIC00000000.1 Bac0008487 Romboutsia maritimum Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Romboutsia maritimum 2020948 NOJZ00000000.2 Bac0008488 Romboutsia weinsteinii Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Romboutsia weinsteinii 2020949 NOJY00000000.2 Bac0008489 Bifidobacterium margollesii Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium margollesii anaerobic 2020964 NMWU00000000.1 Bac0008490 Bifidobacterium imperatoris Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium imperatoris anaerobic faeces 2020965 NMWV00000000.1 Bac0008491 Ahniella affigens Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Ahniella Ahniella affigens 2021234 NZ_CP027860.1 Bac0008492 Oceanospirillum sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Oceanospirillum Oceanospirillum sp. 2021254 NYWF00000000.1 Bac0008493 Bifidobacteriaceae bacterium VN003 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium VN003 2021358 NNRV00000000.1 Bac0008494 Bifidobacteriaceae bacterium NR020 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium NR020 2021359 NNRX00000000.1 Bac0008495 Bifidobacteriaceae bacterium N170 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium N170 2021364 NNSD00000000.1 Bac0008496 Sphingobacteriaceae bacterium str. SH-48 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacteriaceae bacterium 2021370 NVQB00000000.1 Bac0008497 Sphingobacteriaceae bacterium Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacteriaceae bacterium 2021370 SEFK00000000.1 Bac0008498 Flavobacteriales bacterium "The Flavobacteriales bacterium is a Gram-negative, nonsporulating microbe classified within the order Flavobacteriales. While specific morphological characteristics such as shape and cell arrangement remain undefined, this bacterium is recognized for its chemoheterotrophic metabolism, utilizing organic compounds as both carbon and energy sources.Members of the Flavobacteriales order are often found in aquatic environments, including freshwater and marine ecosystems, where they play a crucial role in the degradation of organic matter. Their ability to break down complex organic compounds contributes significantly to nutrient cycling, particularly in environments with high levels of organic detritus. Some species within this group produce enzymes, such as cellulases and chitinases, which allow them to decompose plant and animal materials efficiently. Flavobacteriales bacteria exhibit a wide range of ecological interactions, including symbiotic relationships with other microorganisms. They can enhance the growth and health of host organisms, such as fish, by participating in the degradation of harmful organic substances in their environment. Additionally, these bacteria can also be involved in biogeochemical cycling, participating in processes like the degradation of pollutants and contributing to the overall health of aquatic ecosystems.Understanding the specific roles of Flavobacteriales bacteria in nutrient cycling and their interactions with other microorganisms can provide insights into the dynamics of microbial communities and their impact on ecosystem functioning. Their capabilities highlight the importance of these organisms in maintaining ecological balance and promoting biodiversity in various habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriales bacterium Negative No 1 Chemoheterotroph Nonsporulating 2021391 PALM00000000.1 Bac0008499 Variovorax sp. B4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. B4 2021405 NNBQ00000000.1 Bac0008500 Streptomyces sp. XY006 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. XY006 2021410 NOKT00000000.1 Bac0008501 Arcobacter sp. CECT 9299 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. AHV-9/2010 2021861 PDKH00000000.1 Bac0008502 Labrenzia sp. VG12 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Labrenzia Labrenzia sp. VG12 2021862 NZ_CP022529.1 Bac0008503 Rhodococcus sp. 05-2256-B3 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 05-2256-B3 2022490 NOYY00000000.1 Bac0008504 Rhodococcus sp. 05-2254-4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 05-2254-4 2022492 NOZH00000000.1 Bac0008505 Rhodococcus sp. 06-621-2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 06-621-2 2022500 NOYA00000000.1 Bac0008506 Rhodococcus sp. 06-469-3-2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 06-469-3-2 2022510 NOYC00000000.1 Bac0008507 Rhodococcus sp. 06-221-2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 06-221-2 2022514 NOYJ00000000.1 Bac0008508 Prevotella sp. 885 "Prevotella sp. 885 is a nonsporulating, chemoheterotrophic bacterium belonging to the Prevotella genus, which is notable for its role in various environmental and biological contexts. This microbe is predominantly found in diverse habitats, including the human gastrointestinal tract, oral cavity, and various animal digestive systems, reflecting its adaptability and significance in different microbiomes. Prevotella species are often associated with the fermentation of carbohydrates and proteins, contributing to the gut microbiota and playing a role in nutrient cycling within their ecosystems. This particular strain exemplifies the diversity and complexity of microbial communities, especially in terms of metabolic interactions and symbiotic relationships. Prevotella sp. 885 likely engages in interspecies cooperation, participating in the breakdown of complex organic matter, which in turn supports other microbial populations by providing essential nutrients and metabolic byproducts. A unique ecological insight regarding Prevotella sp. 885 is its potential influence on host health. Research indicates that specific Prevotella strains can be linked to both beneficial and detrimental health outcomes, depending on their abundance and the overall composition of the gut microbiome. For instance, certain Prevotella species have been associated with improved metabolic health, whereas others may correlate with inflammatory conditions. This duality highlights the importance of maintaining a balanced microbiota and suggests that Prevotella sp. 885 could be a key player in understanding the intricate relationships between gut microbes and host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. 885 Negative No 1 Chemoheterotroph Multiple Nonsporulating 2022527 NOVE00000000.1 Bac0008509 Superficieibacter electus Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Superficieibacter Superficieibacter electus 2022662 PQGD00000000.1 Bac0008510 Nitrosopumilales archaeon CG_4_9_14_0_8_um_filter_34_10 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilales archaeon CG_4_9_14_0_8_um_filter_34_10 2022697 PFTD00000000.1 Bac0008511 Sulfurimonas sp. Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp. 2022749 NVXO00000000.2 Bac0008512 Rhodoferax sp. TH121 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sp. TH121 2022803 NOXW00000000.1 Bac0008513 Rhodococcus sp. 15-649-2-2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 15-649-2-2 2023140 NPFM00000000.1 Bac0008514 Rhodococcus sp. 15-2388-1-1a Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 15-2388-1-1a 2023142 NPFP00000000.1 Bac0008515 Rhodococcus sp. 14-2686-1-2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 14-2686-1-2 2023145 NPFS00000000.1 Bac0008516 Leptospira barantonii Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira barantonii 2023184 NPDS00000000.1 Bac0008517 Leptospira perolatii Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira perolatii 2023191 NPDZ00000000.1 Bac0008518 Leptospira haakeii Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira haakeii 2023198 NPEG00000000.1 Bac0008519 Paracoccus hibiscisoli str. CCTCC AB2016182 "Paracoccus hibiscisoli str. CCTCC AB2016182 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and an optimal growth temperature of 29.0°C. This strain falls within the genus Paracoccus, which is known for its diverse metabolic capabilities and ecological versatility. The rod shape of Paracoccus hibiscisoli str. CCTCC AB2016182 is indicative of its cellular morphology, which may influence its interactions in various environments.↵↵The aerobic nature of this bacterium suggests a reliance on oxygen for its growth and energy production, positioning it within ecosystems where oxygen is readily available. The optimal growth temperature of 29.0°C indicates a preference for mild environmental conditions, which may correlate with its natural habitats. ↵↵Given these characteristics, Paracoccus hibiscisoli str. CCTCC AB2016182 may play a role in nutrient cycling within its ecological niche, potentially participating in the degradation of organic matter or the transformation of nitrogenous compounds. This capability could contribute to soil health and fertility, highlighting its potential significance in maintaining ecological balance in habitats such as those associated with hibiscus plants, where it was presumably isolated. Understanding the specific metabolic pathways and ecological interactions of this strain could provide further insights into its role in its native environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus hibiscisoli Gram-negative rod non-motile aerobic 29 mesophilic 2023261 SUNH00000000.1 Bac0008520 Rickettsiaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsiaceae bacterium 2023360 SEEW00000000.1 Bac0008521 Prevotella sp. P3-122 "Prevotella sp. P3-122 is a Gram-negative, non-sporulating bacterium primarily found in the intestinal microflora of various animal species. This microbe is classified as a mesophilic organism, thriving in moderate temperature environments conducive to its growth and metabolic processes. Prevotella sp. P3-122 exhibits a chemoheterotrophic metabolism, deriving energy from the fermentation of polysaccharides, which play a crucial role in the breakdown of complex carbohydrates within the gut ecosystem. Anaerobic by nature, Prevotella sp. P3-122 is well-adapted to the oxygen-depleted environment of the intestines, where it contributes significantly to the fermentation processes occurring in the gut. By degrading polysaccharides, it not only helps to liberate energy for itself but also aids its host in digesting dietary fibers, thereby enhancing nutrient absorption. This fermentation activity results in the production of short-chain fatty acids, which are beneficial for the health of the intestinal lining and play a vital role in maintaining metabolic homeostasis. Ecologically, Prevotella sp. P3-122 exemplifies the intricate relationships between gut microbiota and their host, reflecting the balance of microbe-host interactions that influence overall health. Its presence highlights the importance of microbial diversity in the gut, where different bacterial species work in concert to optimize digestion and support the immune system. This underscores the potential for harnessing such microbes in therapeutic applications aimed at addressing gastrointestinal disorders and promoting gut health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. P3-122 Negative No 1 Anaerobic Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 2024223 NPJH00000000.1 Bac0008522 Prevotella sp. P5-64 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. P5-64 2024226 NPJK00000000.1 Bac0008523 Glutamicibacter sp. BW78 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter sp. BW78 2024403 NRGU00000000.1 Bac0008524 Glutamicibacter sp. BW80 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter sp. BW80 2024404 NRGV00000000.1 Bac0008525 Psychrobacter sp. JB193 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. JB193 2024406 NRGY00000000.1 Bac0008526 Candidatus Viridilinea mediisalina str. Kir15-3F Bacillati Chloroflexota Chloroflexia Chloroflexales Oscillochloridaceae Candidatus Viridilinea Candidatus Viridilinea mediisalina 2024553 NQWI00000000.1 Bac0008527 Plantactinospora sp. KBS50 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Plantactinospora Plantactinospora sp. KBS50 2024580 NZ_CP022961.1 Bac0008528 Acinetobacter sp. BS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. BS1 2024618 NPMK00000000.1 Bac0008529 Levilactobacillus bambusae str. BS-W1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus bambusae 2024736 QCXQ00000000.1 Bac0008530 Balneola sp. Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp. 2024824 NZQV00000000.1 Bac0008531 Bermanella sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Bermanella Bermanella sp. 2024825 NYTP00000000.1 Bac0008532 Citromicrobium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Citromicrobium Citromicrobium sp. 2024827 PAKL00000000.1 Bac0008533 Cycloclasticus sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus sp. 2024830 PBBD00000000.1 Bac0008534 Filomicrobium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Filomicrobium Filomicrobium sp. 2024831 NZGY00000000.1 Bac0008535 Geminicoccus sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Geminicoccales Geminicoccaceae Geminicoccus Geminicoccus sp. 2024832 NYZJ00000000.1 Bac0008536 Gimesia sp. Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia sp. 2024833 PBQK00000000.1 Bac0008537 Halioglobus sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Halioglobus Halioglobus sp. 2024834 PABK00000000.1 Bac0008538 Hirschia sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hirschia Hirschia sp. 2024835 PAXZ00000000.1 Bac0008539 Magnetovibrio sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Magnetovibrionaceae Magnetovibrio Magnetovibrio sp. 2024836 NZFO00000000.1 Bac0008540 Marinovum sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Marinovum Marinovum sp. 2024839 NZGN00000000.1 Bac0008541 Methylophaga sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga sp. 2024840 NZSL00000000.1 Bac0008542 Nisaea sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassobaculaceae Nisaea Nisaea sp. 2024842 NZFM00000000.1 Bac0008543 Nitrospina sp. Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp. 2024844 DPVJ00000000.1 Bac0008544 Owenweeksia sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Owenweeksiaceae Owenweeksia Owenweeksia sp. 2024847 NZNV00000000.1 Bac0008545 Candidatus Pelagibacter sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Candidatus Pelagibacter Candidatus Pelagibacter sp. 2024849 NZES00000000.1 Bac0008546 Porticoccus sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae Porticoccus Porticoccus sp. 2024853 PANQ00000000.1 Bac0008547 Pseudozobellia sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Pseudozobellia Pseudozobellia sp. 2024854 PAZQ00000000.1 Bac0008548 Roseibacillus sp. Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseibacillus Roseibacillus sp. 2024856 NZAC00000000.1 Bac0008549 Sandaracinus sp. Pseudomonadati Myxococcota Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp. 2024858 PABA00000000.1 Bac0008550 Spongiibacter sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacter Spongiibacter sp. 2024860 PCBB00000000.1 Bac0008551 Tistrella sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Geminicoccales Geminicoccaceae Tistrella Tistrella sp. 2024861 PAPP00000000.1 Bac0008552 Synechococcus sp. NAT40 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. NAT40 2024884 NZXF00000000.1 Bac0008553 SAR116 cluster bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Puniceispirillales SAR116 cluster bacterium 2024888 NZIY00000000.1 Bac0008554 Acidiferrobacteraceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Acidiferrobacterales Acidiferrobacteraceae Acidiferrobacteraceae bacterium 2024893 PBJL00000000.1 Bac0008555 Alcanivoracaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivoracaceae bacterium 2024895 PAJO00000000.1 Bac0008556 Anaerolineaceae bacterium Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Anaerolineaceae bacterium 2024896 PABI00000000.1 Bac0008557 Lactococcus reticulitermitis str. Rs-Y01 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus reticulitermitis 2025039 BEDT00000000.1 Bac0008558 Bifidobacterium sp. wkB344 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. wkB344 2025113 NPOQ00000000.1 Bac0008559 Larkinella knui str. KCTC42998 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Larkinella Larkinella knui 2025310 RQJP00000000.1 Bac0008560 Larkinella rosea str. KCTC52004 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Larkinella Larkinella rosea 2025312 RQJO00000000.1 Bac0008561 Methanobacterium sp. BAmetb5 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BAmetb5 2025351 NZ_CP022706.1 Bac0008562 Enterobacterales bacterium CwR94 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacterales bacterium CwR94 2025587 NVXY00000000.1 Bac0008563 Vibrio qinghaiensis str. Q67 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio qinghaiensis 2025808 NZ_CP022742.1 Bac0008564 Pseudoalteromonas sp. NBT06-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. NBT06-2 2025950 NQMR00000000.1 Bac0008565 Bifidobacteriaceae bacterium NR016 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium NR016 2026093 NQOQ00000000.1 Bac0008566 Massilia phosphatilytica str. 12-OD1 "Massilia phosphatilytica strain 12-OD1 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This strain is characterized by its non-spore-forming nature, indicating a reliance on vegetative growth for reproduction and survival. The morphological and physiological traits of M. phosphatilytica str. 12-OD1 suggest its adaptation to specific environmental niches where oxygen is available and temperatures are moderate.↵↵Given its classification within the genus Massilia, this bacterium may play a role in biogeochemical cycles, particularly in phosphorus cycling, as indicated by its name, ""phosphatilytica."" The metabolic capabilities associated with this genus often include the ability to utilize various organic compounds, which may contribute to nutrient turnover in its habitat. Understanding the ecological role of M. phosphatilytica str. 12-OD1 could provide insights into microbial interactions within its environment, particularly in contexts where phosphorus availability is a limiting factor for other organisms. This bacterium may serve as a model for studying microbial responses to changes in nutrient dynamics and environmental conditions." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia phosphatilytica Gram-negative rod aerobic 29 mesophilic non-spore-forming 2026176 PUIP00000000.1 Bac0008567 Meiothermus luteus str. KCTC 52599 "Meiothermus luteus strain KCTC 52599 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 45.0°C and requires oxygen for growth, indicating its aerobic nature. This organism is well-adapted to high-temperature environments, which may reflect its potential role in biogeochemical processes in thermally enriched habitats. ↵↵As a member of the genus Meiothermus, this strain is likely to possess metabolic pathways that facilitate its survival and proliferation in elevated thermal niches, possibly contributing to the cycling of nutrients in such ecosystems. Furthermore, the aerobic nature of Meiothermus luteus str. KCTC 52599 suggests that it may play a role in the oxidation of organic compounds, which can be significant in environments where oxygen is present. ↵↵Understanding the specific traits of Meiothermus luteus str. KCTC 52599 not only enhances our knowledge of thermophilic bacteria but also provides insight into their ecological interactions and potential applications in biotechnology, where high-temperature processes are often required." Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus luteus Gram-negative rod non-motile aerobic 45 thermophilic 2026184 QWKZ00000000.1 Bac0008568 Bacillus paranthracis str. Mn5 "Bacillus paranthracis str. Mn5 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits the ability to sporulate, enabling it to survive in various environmental conditions. This strain is classified as a chemoheterotroph, utilizing organic compounds as an energy source. It thrives optimally at a temperature of 37.0°C, suggesting a preference for warm environments, which may align with the conditions found in certain ecological niches.↵↵B. paranthracis str. Mn5 is a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments. This versatility in oxygen usage likely contributes to its adaptation to multiple habitats, enabling it to occupy diverse ecological roles. The ability to sporulate is particularly significant, as it not only aids in the survival of the organism under unfavorable conditions but also plays a crucial role in its dispersal and colonization potential.↵↵The adaptability of B. paranthracis str. Mn5 to different oxygen levels and its capacity to form spores may facilitate its persistence in varied environments, including soil and decomposing organic matter. This trait could allow the strain to contribute to nutrient cycling within its habitat, underscoring its potential ecological importance in maintaining microbial diversity and ecosystem function. Understanding the functional roles of such bacteria in their respective environments can provide insights into their contributions to ecological balance and resilience." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus paranthracis Positive Rod No 1 Facultative Anaerobe 37 Chemoheterotroph Mesophilic Multiple Chains Sporulating 2026186 MACE00000000.1 Bac0008569 Bacillus paranthracis str. PR1 "Bacillus paranthracis strain PR1 is a Gram-positive, rod-shaped bacterium that typically forms chains and is capable of sporulation. This strain thrives optimally at a temperature of 37.0°C and exhibits a facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. As a chemoheterotroph, B. paranthracis str. PR1 derives its energy from organic compounds, which suggests a versatile adaptability to various nutrient sources.↵↵The ability of B. paranthracis PR1 to sporulate indicates a robust survival mechanism in fluctuating environmental conditions, enabling it to persist in multiple habitats. Its facultative anaerobic nature further enhances its ecological resilience, allowing it to occupy diverse niches where oxygen levels can vary significantly. This adaptability may contribute to its ecological role in nutrient cycling and interactions within microbial communities, as it can thrive in both oxygen-rich and oxygen-depleted environments. Overall, the traits of B. paranthracis str. PR1 highlight its potential significance in various ecological contexts, where it may play a role in decomposition and organic matter breakdown." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus paranthracis Positive Rod No 1 Facultative Anaerobe 37 Chemoheterotroph Mesophilic Multiple Chains Sporulating 2026186 NZ_CP040515.1 Bac0008570 Bacillus pacificus str. EB422 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pacificus 2026187 MACD00000000.1 Bac0008571 Bacillus pacificus str. SN4-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pacificus 2026187 VEPU00000000.1 Bac0008572 Bacillus tropicus str. CD3-2 "Bacillus tropicus strain CD3-2 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This species demonstrates an optimal growth temperature of 25.0°C, indicating a preference for moderate conditions, which may reflect its adaptation to diverse habitats. The ability to grow in various environments suggests a level of ecological versatility, allowing B. tropicus str. CD3-2 to potentially exploit a range of organic substrates for energy and nutrients. ↵↵As a member of the Bacillus genus, this strain may exhibit traits common to other Bacillus species, such as the production of spores, though specific spore formation characteristics were not provided in the trait data. The aerobic nature of B. tropicus str. CD3-2 implies a reliance on oxygen for metabolic processes, which could influence its distribution in natural ecosystems, particularly in soil and aquatic environments where oxygen availability varies.↵↵Furthermore, the ability to thrive in multiple habitats may contribute to its significance in biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Understanding the ecological roles of Bacillus tropicus str. CD3-2 could provide insights into its potential contributions to soil health and ecosystem functioning, particularly in environments that favor aerobic microbial activity." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus tropicus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 2026188 VEPW00000000.1 Bac0008573 Bacillus albus Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus albus 2026189 SDFP00000000.1 Bac0008574 Bacillus luti str. TD41 "Bacillus luti strain TD41 is a Gram-positive, rod-shaped bacterium that typically forms chains and is capable of sporulation, enabling it to endure adverse environmental conditions. This microbe exhibits facultative aerobic and anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments. The optimal growth temperature for Bacillus luti TD41 is around 29.0°C, which suggests a preference for mesophilic conditions.↵↵As a member of the Bacillus genus, this strain's ability to form spores is a notable trait, contributing to its resilience and potential involvement in various ecological processes. The chain arrangement of cells indicates its capacity for multicellular organization, which may facilitate cooperative behaviors or enhance survival in fluctuating environments. ↵↵Bacillus luti TD41's metabolic versatility and spore-forming ability hint at its ecological roles, potentially including soil health maintenance and nutrient cycling, where it may contribute to the degradation of organic matter. This adaptability underscores the importance of such microorganisms in biogeochemical processes and their potential utility in biotechnological applications that leverage their metabolic capabilities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus luti Positive Rod No 1 facultative aerobe/anaerobe 29 mesophilic Chains spore-forming 2026191 MACI00000000.1 Bac0008575 Bacillus paramycoides str. NH24A2 "Bacillus paramycoides str. NH24A2 is a Gram-positive, rod-shaped bacterium that exhibits facultative aerobe/anaerobe metabolic characteristics. This organism is notable for its inability to form spores, distinguishing it from many other members of the Bacillus genus that typically possess sporulation capabilities. Optimal growth for Bacillus paramycoides str. NH24A2 occurs at a temperature of 29.0°C, suggesting a potential preference for mesophilic environments.↵↵The facultative nature of its oxygen requirement indicates that Bacillus paramycoides str. NH24A2 can thrive in both oxygen-rich and oxygen-limited conditions, allowing it to adapt to a range of ecological niches. This metabolic versatility may enable it to occupy various habitats, potentially including soil, water, or decaying organic matter, where fluctuating oxygen levels are common.↵↵The combination of its Gram-positive cell wall structure and rod shape provides insights into its cellular biology, potentially influencing its interactions with other microorganisms and its environment. Understanding the traits of Bacillus paramycoides str. NH24A2 may enhance our comprehension of microbial community dynamics in environments that experience variable oxygen availability, and it may contribute to biotechnological applications where such metabolic flexibility is advantageous." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus paramycoides Gram-positive rod non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 2026194 MAOI00000000.1 Bac0008576 Paraburkholderia aromaticivorans str. BN5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia aromaticivorans 2026199 NZ_CP022992.1 Bac0008577 Klebsiella quasivariicola "Klebsiella quasivariicola is a Gram-negative, nonsporulating bacterium classified within the Enterobacteriaceae family. This mesophilic microbe thrives at moderate temperatures, typically found in various environments where organic matter decomposition occurs. As a chemoheterotroph, K. quasivariicola derives its energy and carbon from organic compounds, making it an essential contributor to the nutrient cycling processes in its ecosystems. First identified in a study of microbial diversity, K. quasivariicola has gained attention due to its potential role in both environmental microbiology and human health. While specific metabolic pathways and oxygen requirements remain to be fully elucidated, its close relationship with clinically relevant Klebsiella species suggests possible implications for pathogenicity and antibiotic resistance. Given that other members of this genus are known to be opportunistic pathogens, further research into K. quasivariicola could provide insights into microbial interactions in both natural habitats and near human activity, such as in wastewater treatment systems or soil microbiomes. A unique ecological insight into K. quasivariicola is its potential symbiotic role in ecosystems where it may assist in the degradation of pollutants or organic waste. This capability highlights the importance of understanding not only its metabolic functions but also its interactions with other microbial communities, ultimately contributing to environmental health and sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasivariicola Negative No 1 Chemoheterotroph Mesophilic Nonsporulating 2026240 UJYZ00000000.2 Bac0008578 Corynebacterium hadale str. NBT06-6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium hadale 2026255 NQMQ00000000.1 Bac0008579 Flavobacterium sp. IR1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. IR1 2026304 NQOT00000000.1 Bac0008580 Streptomyces sp. alain-838 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. alain-838 2026340 NQNW00000000.1 Bac0008581 Streptomyces sp. Alain-F2R5 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Alain-F2R5 2026341 NQOS00000000.1 Bac0008582 Candidatus Hecatellales archaeon Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia Candidatus Hecatellales Candidatus Hecatellales archaeon 2026714 QMYF00000000.1 Bac0008583 Candidatus Bathyarchaeota archaeon Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon 2026714 PIYH00000000.1 Bac0008584 Candidatus Bathyarchaeum sp. Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia Candidatus Bathyarchaeales Candidatus Bathyarchaeaceae Candidatus Bathyarchaeum Candidatus Bathyarchaeum sp. 2026714 PIXS00000000.1 Bac0008585 Chloroflexota bacterium Bacillati Chloroflexota Chloroflexota bacterium 2026724 PAOG00000000.1 Bac0008586 Chromatiales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiales bacterium 2026725 PBYE00000000.1 Bac0008587 Crocinitomicaceae bacterium Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Crocinitomicaceae bacterium 2026728 PACT00000000.1 Bac0008588 Deltaproteobacteria bacterium Pseudomonadati Myxococcota Myxococcia Deltaproteobacteria bacterium 2026735 PQXE00000000.1 Bac0008589 Methanobacteriota archaeon Methanobacteriati Methanobacteriota Methanobacteriota archaeon 2026739 PAEA00000000.1 Bac0008590 Flammeovirgaceae bacterium Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirgaceae bacterium 2026740 NYZQ00000000.1 Bac0008591 Gemmatimonadota bacterium Pseudomonadati Gemmatimonadota Gemmatimonadota bacterium 2026742 NYZA00000000.1 Bac0008592 Halieaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Halieaceae bacterium 2026743 PAFI00000000.1 Bac0008593 Candidatus Heimdallarchaeota archaeon Promethearchaeati Candidatus Heimdallarchaeota Candidatus Heimdallarchaeota archaeon 2026747 QMYY00000000.1 Bac0008594 Hyphomonadaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonadaceae bacterium 2026748 PAXC00000000.1 Bac0008595 Ignavibacteriota bacterium Pseudomonadati Ignavibacteriota Ignavibacteriota bacterium 2026749 PAAX00000000.1 Bac0008596 Kiritimatiellaceae bacterium Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Kiritimatiellaceae Kiritimatiellaceae bacterium 2026752 PAFV00000000.1 Bac0008597 Legionellales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellales bacterium 2026754 PBJS00000000.1 Bac0008598 Magnetococcales bacterium Pseudomonadati Pseudomonadota Magnetococcia Magnetococcales Magnetococcales bacterium 2026759 PAOA00000000.1 Bac0008599 Fidelibacterota bacterium Pseudomonadati Fidelibacterota Fidelibacterota bacterium 2026760 PASS00000000.1 Bac0008600 Micrococcales bacterium Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcales bacterium 2026762 PDSI00000000.1 Bac0008601 Nanobdellota archaeon Nanobdellati Nanobdellota Nanobdellota archaeon 2026764 QMVE00000000.1 Bac0008602 Nitrosopumilales archaeon Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilales archaeon 2026768 RPPJ00000000.1 Bac0008603 Nitrospinota bacterium Pseudomonadati Nitrospinota Nitrospinota bacterium 2026769 DNYS00000000.1 Bac0008604 Nitrospiraceae bacterium Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospiraceae bacterium 2026770 DMLV00000000.1 Bac0008605 Phycisphaerae bacterium Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerae bacterium 2026778 NYSW00000000.1 Bac0008606 Planctomycetaceae bacterium Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomycetaceae bacterium 2026779 PABB00000000.1 Bac0008607 Planctomycetota bacterium Pseudomonadati Planctomycetota Planctomycetota bacterium 2026780 PAIH00000000.1 Bac0008608 Candidatus Poribacteria bacterium Candidatus Poribacteria Candidatus Poribacteria bacterium 2026781 NZIS00000000.1 Bac0008609 Porticoccaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae Porticoccaceae bacterium 2026782 PABE00000000.1 Bac0008610 Rhodospirillales bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillales bacterium 2026786 NZSA00000000.1 Bac0008611 Rickettsiales bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiales bacterium 2026788 NZHH00000000.1 Bac0008612 Salinisphaeraceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Salinisphaerales Salinisphaeraceae Salinisphaeraceae bacterium 2026789 NYTH00000000.1 Bac0008613 Saprospirales bacterium Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospirales bacterium 2026790 PAAY00000000.1 Bac0008614 Bryobacterales bacterium Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacterales bacterium 2026791 DOSZ00000000.1 Bac0008615 Sutterellaceae bacterium Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterellaceae bacterium 2026794 DQEV00000000.1 Bac0008616 Thiotrichales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichales bacterium 2026796 PBXD00000000.1 Bac0008617 Verrucomicrobiota bacterium Pseudomonadati Verrucomicrobiota Verrucomicrobiota bacterium 2026799 QHNG00000000.1 Bac0008618 Verrucomicrobia bacterium Pseudomonadati Verrucomicrobiota Verrucomicrobiota bacterium 2026799 QHPI00000000.1 Bac0008619 Verrucomicrobiales bacterium Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiales bacterium 2026801 NYWG00000000.1 Bac0008620 Candidatus Woesearchaeota archaeon Nanobdellati Candidatus Woesearchaeota Candidatus Woesearchaeota archaeon 2026803 NZBB00000000.1 Bac0008621 Zetaproteobacteria bacterium Pseudomonadati Pseudomonadota Candidatius Mariprofundia Zetaproteobacteria bacterium 2026807 RFFT00000000.1 Bac0008622 Campylobacterota bacterium Pseudomonadati Campylobacterota Campylobacterota bacterium 2026809 QMKX00000000.1 Bac0008623 Nitrospirota bacterium Pseudomonadati Nitrospirota Nitrospirota bacterium 2026887 NSIK00000000.1 Bac0008624 Providencia huaxiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia huaxiensis 2027290 NZ_CP031120.1 Bac0008625 Veillonella sp. T11011-6 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. T11011-6 2027459 PPCW00000000.1 Bac0008626 Mucilaginibacter rubeus str. P3 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter rubeus 2027860 QFKV00000000.1 Bac0008627 Cupriavidus sp. P-10 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. P-10 2027911 NZ_AP025174.1 Bac0008628 Sulfuricurvum sp. PD_MW2 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. PD_MW2 2027917 NSIU00000000.1 Bac0008629 Curvibacter sp. PD_MW3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Curvibacter Curvibacter sp. PD_MW3 2027918 NSIV00000000.1 Bac0008630 Enterobacter cloacae complex sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae complex sp. 2027919 QKNF00000000.1 Bac0008631 Lachnoclostridium sp. Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. 2028282 DPAR00000000.1 Bac0008632 Rhizobium sp. 11515TR Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. 11515TR 2028343 NZ_CP022999.1 Bac0008633 Rhodococcus sp. ACS1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. ACS1 2028570 NSDZ00000000.1 Bac0008634 Microbacterium sp. UMB0228 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. UMB0228 2029109 PNFU00000000.1 Bac0008635 Vandammella animalimorsus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Vandammella Vandammella animalimorsus 2029117 NSJE00000000.1 Bac0008636 Stenotrophobium rhamnosiphilum Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Stenotrophobium Stenotrophobium rhamnosiphilum 2029166 QANS00000000.1 Bac0008637 Corynebacterium sp. NML 120412 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. NML 120412 2029401 NSGL00000000.1 Bac0008638 Mesorhizobium sp. WSM4308 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. WSM4308 2029409 NSFW00000000.1 Bac0008639 Photorhabdus sp. S8-52 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus sp. S8-52 2029682 NSCL00000000.1 Bac0008640 Photorhabdus laumondii subsp. clarkei "Photorhabdus laumondii subsp. clarkei is a Gram-negative, rod-shaped bacterium that is characterized by its nonsporulating nature and facultative anaerobic metabolism. This subspecies is typically found in a host-associated habitat, which suggests a close relationship with its host organisms. Due to its facultative oxygen requirement, P. laumondii subsp. clarkei can thrive in both aerobic and anaerobic environments, adapting its metabolic processes according to the availability of oxygen.↵↵As a member of the genus Photorhabdus, this bacterium is known for its symbiotic relationship with certain nematodes, particularly those in the genus Heterorhabditis. This interaction indicates a potential role in the life cycle of its nematode partners, facilitating nutrient acquisition and possibly contributing to the nematodes' pathogenic effects on insect hosts. The ecological dynamics of P. laumondii subsp. clarkei highlight the intricate relationships between microbes and their hosts, showcasing the potential for mutualism in ecological contexts. Further investigations into its metabolic pathways and interactions could provide insights into its role within host-associated environments and its applications in biological pest control." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus laumondii Negative Rod Yes 1 2 Facultative Mesophilic HostAssociated Symbiotic Nonsporulating 2029685 NSCI00000000.1 Bac0008641 Salimicrobium humidisoli Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salimicrobium Salimicrobium humidisoli 2029857 NSGH00000000.1 Bac0008642 Elusimicrobia bacterium Pseudomonadati Elusimicrobiota Elusimicrobiota bacterium 2030800 DMMW00000000.1 Bac0008643 Candidatus Cloacimonadota bacterium Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonadota bacterium 2030808 PDON00000000.1 Bac0008644 Candidatus Cloacimonetes bacterium Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonadota bacterium 2030808 NVVD00000000.1 Bac0008645 Candidatus Hydrogenedentota bacterium Pseudomonadati Candidatus Hydrogenedentota Candidatus Hydrogenedentota bacterium 2030809 NVWG00000000.1 Bac0008646 Desulfotalea sp. Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfotalea Desulfotalea sp. 2030813 NVXR00000000.1 Bac0008647 Robiginitomaculum sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Robiginitomaculaceae Robiginitomaculum Robiginitomaculum sp. 2030823 NVXG00000000.1 Bac0008648 Thalassobium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thalassobium Thalassobium sp. 2030825 NVUW00000000.1 Bac0008649 Piscirickettsiaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsiaceae bacterium 2030828 NVUF00000000.1 Bac0008650 SAR86 cluster bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria SAR86 cluster bacterium 2030880 NVWI00000000.1 Bac0008651 OCS116 cluster bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria OCS116 cluster bacterium 2030921 NVUS00000000.2 Bac0008652 Bacteroidales bacterium "Currently, very little is known about the microbe 'Bacteroidales bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium 2030927 QAMW00000000.1 Bac0008653 Lysobacteraceae bacterium NML93-0399 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium NML93-0399 2032565 NTJI00000000.1 Bac0008654 Lysobacteraceae bacterium NML91-0213 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium NML91-0213 2032582 NWQL00000000.1 Bac0008655 Pseudomonas sp. WN033 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. WN033 2032629 NSKG00000000.1 Bac0008656 Armatimonadota bacterium Bacillati Armatimonadota Armatimonadota bacterium 2033014 DMFW00000000.1 Bac0008657 Aeromonas sp. CA23 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. CA23 2033032 NZ_CP023818.1 Bac0008658 Aeromonas sp. CU5 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. CU5 2033033 NZ_CP023817.1 Bac0008659 Chitinophaga sp. MD30 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga sp. MD30 2033437 NZ_CP023254.1 Bac0008660 Bacillus sp. AFS015802 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS015802 2033486 NTUP00000000.1 Bac0008661 Bacillus sp. AFS023182 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS023182 2033492 NTRO00000000.1 Bac0008662 Bacillus sp. AFS054943 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS054943 2033506 NUGV00000000.1 Bac0008663 Bacillus sp. AFS059628 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS059628 2033508 NVEC00000000.1 Bac0008664 Bacillus sp. AFS076308 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS076308 2033512 NUYW00000000.1 Bac0008665 Bacillus sp. AFS077874 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS077874 2033513 NUYF00000000.1 Bac0008666 Bacillus sp. AFS088145 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS088145 2033514 NUUX00000000.1 Bac0008667 Bacillus sp. AFS094611 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS094611 2033516 NVMH00000000.1 Bac0008668 Bacillus sp. AFS096315 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS096315 2033517 NVLP00000000.1 Bac0008669 Serratia oryzae str. J11-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia oryzae 2034155 MOXD00000000.1 Bac0008670 Flavobacterium sp. 9 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. 9 2035198 PEEU00000000.1 Bac0008671 Flavobacterium sp. 1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. 1 2035200 PGER00000000.1 Bac0008672 Acidovorax sp. 56 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 56 2035205 PEEV00000000.1 Bac0008673 Janthinobacterium sp. 64 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. 64 2035208 PHUG00000000.1 Bac0008674 Janthinobacterium sp. 13 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. 13 2035211 PEEQ00000000.1 Bac0008675 bacterium HR10 bacterium HR10 2035405 BEHM00000000.1 Bac0008676 bacterium HR11 bacterium HR11 2035406 BEHN00000000.1 Bac0008677 bacterium HR15 bacterium HR15 2035410 BEHR00000000.1 Bac0008678 bacterium HR20 bacterium HR20 2035415 BEHW00000000.1 Bac0008679 bacterium HR21 bacterium HR21 2035416 BEHX00000000.1 Bac0008680 bacterium HR24 bacterium HR24 2035419 BEIA00000000.1 Bac0008681 bacterium HR28 bacterium HR28 2035423 BEIE00000000.1 Bac0008682 bacterium HR37 bacterium HR37 2035432 BEIN00000000.1 Bac0008683 archaeon HR01 archaeon HR01 2035437 BEHD00000000.1 Bac0008684 archaeon HR03 archaeon HR03 2035439 BEHF00000000.1 Bac0008685 Rhizobium chutanense Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium chutanense 2035448 RJTJ00000000.1 Bac0008686 Rhizobium sp. J15 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. J15 2035450 NWSX00000000.1 Bac0008687 Rhizobium sp. L18 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. L18 2035451 NWSR00000000.1 Bac0008688 Rhizobium sp. L43 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. L43 2035452 NWSQ00000000.1 Bac0008689 Candidatus Omnitrophota bacterium Pseudomonadati Candidatus Omnitrophota Candidatus Omnitrophota bacterium 2035772 DMEU00000000.1 Bac0008690 Streptomyces sp. Tue6028 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Tue6028 2036037 MLCE00000000.1 Bac0008691 Suicoccus acidiformans Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Suicoccus Suicoccus acidiformans 2036206 NZ_CP023434.1 Bac0008692 Sinorhizobium sp. M4_45 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. M4_45 2037901 NWVE00000000.1 Bac0008693 Nostoc flagelliforme CCNUN1 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc flagelliforme 2038116 NZ_CP024790.1 Bac0008694 Bacillus fungorum Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus fungorum 2039284 NWUW00000000.1 Bac0008695 Micromonospora sp. WMMA2032 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. WMMA2032 2039870 NZ_CP024052.1 Bac0008696 Tychonema bourrellyi FEM_GT703 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Tychonema Tychonema bourrellyi 2040638 NXIB00000000.2 Bac0008697 Escherichia sp. E4385 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. E4385 2040639 VATU00000000.1 Bac0008698 Helicobacter sp. MIT 14-3879 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. MIT 14-3879 2040649 NXLP00000000.1 Bac0008699 Campylobacter sp. MIT 12-5580 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. MIT 12-5580 2040651 NXLK00000000.1 Bac0008700 Campylobacter sp. BCW_8712 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. BCW_8712 2040653 NXHW00000000.1 Bac0008701 Corynebacterium gottingense str. DSM 103494 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium gottingense 2041036 RDRE00000000.1 Bac0008702 Eubacterium maltosivorans str. YI Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium maltosivorans 2041044 NZ_CP029487.1 Bac0008703 Candidatus Bathyarchaeota archaeon B24-2 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon B24-2 2041147 PCNA00000000.1 Bac0008704 Arminella tumorigenes Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Arminella Arminella tumorigenes 2041385 NZ_CP117256.1 Bac0008705 Pectobacterium parvum Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium parvum 2042057 JQHN00000000.1 Bac0008706 Ochrobactrum sp. MYb68 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum sp. MYb68 2042474 PCOE00000000.1 Bac0008707 Vreelandella nigrificans Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella nigrificans 2042704 NWUX00000000.1 Bac0008708 Candidatus Desulfosporosinus infrequens Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Candidatus Desulfosporosinus infrequens 2043169 OMOF00000000.1 Bac0008709 Clostridium sp. HMb25 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. HMb25 2044259 PDDG00000000.1 Bac0008710 Streptomyces sp. Ru87 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ru87 2044307 PDIX00000000.1 Bac0008711 Escherichia sp. E2586 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. E2586 2044457 VATN00000000.1 Bac0008712 Escherichia sp. E2593 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. E2593 2044458 VATO00000000.1 Bac0008713 Escherichia sp. E4736 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. E4736 2044466 VATT00000000.1 Bac0008714 Arcobacter sp. CECT 9188 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. CECT 9188 2044505 PDKI00000000.1 Bac0008715 Arcobacter sp. F2176 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. F2176 2044511 PDJV00000000.1 Bac0008716 Natrarchaeobaculum sulfurireducens str. AArc1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum sulfurireducens 2044521 NZ_CP024047.1 Bac0008717 Natrarchaeobaculum sulfurireducens str. AArc-Mg Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum sulfurireducens 2044521 NZ_CP027032.1 Bac0008718 Candidatus Fermentibacterota bacterium Pseudomonadati Candidatus Fermentibacterota Candidatus Fermentibacterota bacterium 2044591 PDSZ00000000.1 Bac0008719 Candidatus Delongbacteria bacterium Candidatus Delongiibacteriota Candidatus Delongbacteria bacterium 2044594 PDTR00000000.1 Bac0008720 Staphylococcus debuckii Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus debuckii 2044912 NZ_CP033460.1 Bac0008721 candidate division KSB3 bacterium candidate division KSB3 bacterium 2044937 PDPS00000000.1 Bac0008722 Sphingobacteriales bacterium Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriales bacterium 2044944 RXJG00000000.1 Bac0008723 Prosthecochloris sp. ZM_2 Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. ZM_2 2045206 PDNY00000000.2 Bac0008724 Salipaludibacillus keqinensis str. KQ-12 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salipaludibacillus Salipaludibacillus keqinensis 2045207 PDOD00000000.1 Bac0008725 Massilia violaceinigra str. B2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia violaceinigra 2045208 NZ_CP024608.1 Bac0008726 Bifidobacterium felsineum Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium felsineum 2045440 PEBJ00000000.1 Bac0008727 Bifidobacterium simiarum Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium simiarum 2045441 PEBK00000000.1 Bac0008728 Janthinobacterium sp. BJB426 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. BJB426 2048010 PDZL00000000.1 Bac0008729 Sporosarcina sp. P35 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. P35 2048246 PDZD00000000.1 Bac0008730 Sporosarcina sp. P29 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. P29 2048252 PDYX00000000.1 Bac0008731 Sporosarcina sp. P13 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. P13 2048263 PDYM00000000.1 Bac0008732 Alicyclobacillaceae bacterium I2511 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillaceae bacterium I2511 2048547 QXHL00000000.1 Bac0008733 Mycobacterium lehmannii Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium lehmannii 2048550 LQIR00000000.1 Bac0008734 Solibacillus sp. R5-41 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Solibacillus Solibacillus sp. R5-41 2048654 NZ_CP024123.1 Bac0008735 Janthinobacterium sp. ROICE36 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. ROICE36 2048670 PEBS00000000.1 Bac0008736 Rhizobium sp. NXC24 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. NXC24 2048897 NZ_CP024312.1 Bac0008737 Microbacterium sp. Y-01 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Y-01 2048898 NZ_CP024170.1 Bac0008738 Caulobacter sp. X Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. X 2048901 PEGF00000000.1 Bac0008739 Hahellaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Hahellaceae Hahellaceae bacterium 2048971 NZNF00000000.1 Bac0008740 Coprococcus sp. "Coprococcus sp. is a genus of cocci-shaped bacteria that are noteworthy for their potential role in the gut microbiota. These microorganisms are typically found in the intestines of various animals and are believed to contribute to the fermentation of dietary fibers, aiding in the digestion process. The spherical shape of Coprococcus sp. allows for close packing in biofilms, which can enhance their survival and functionality within complex microbial communities.↵↵While specific metabolic pathways and ecological roles of Coprococcus sp. are not detailed here, it is important to acknowledge that members of this genus are often associated with the production of short-chain fatty acids (SCFAs) as a result of fiber fermentation. SCFAs, such as butyrate, are known to play a crucial role in gut health, offering protective effects against inflammation and serving as an energy source for colonocytes.↵↵Given the cocci morphology and the potential involvement of Coprococcus sp. in gut fermentation processes, these bacteria may also play a significant role in maintaining microbial diversity and stability within the gastrointestinal microbiome. This diversity is essential for overall health, as it can influence host metabolism and immune responses. Future studies focusing on the specific functions and interactions of Coprococcus sp. within the gut ecosystem will be vital in understanding their contributions to host physiology and health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. Cocci 2049024 DMVF00000000.1 Bac0008741 Phascolarctobacterium sp. "Phascolarctobacterium sp. is a nonsporulating, mesophilic bacterium found primarily in the intestinal microflora of animals, particularly in the gut of koalas. As a chemoheterotroph, it derives energy and carbon from organic compounds, playing a crucial role in the digestive processes of its host. The bacterium's adaptation to a symbiotic environment allows it to thrive in the complex microbial community of the gut, where it contributes to the breakdown of plant materials and the fermentation of polysaccharides. The presence of Phascolarctobacterium sp. in the intestines is particularly significant due to its involvement in the metabolic processes that enhance nutrient absorption and overall gut health. This microbe, alongside other gut bacteria, aids in the fermentation of dietary fibers, producing short-chain fatty acids that are vital for maintaining the health of the intestinal lining and providing energy to the host. Ecologically, Phascolarctobacterium sp. exemplifies the intricate interactions within gut microbiomes, highlighting the importance of gut microbes in animal health and nutrition. Its role extends beyond mere digestion; it participates in immune modulation and pathogen resistance, demonstrating how specific microbial populations can influence the health and ecological fitness of their hosts. The study of Phascolarctobacterium sp. and its interactions in the gut microbiome can provide valuable insights into the co-evolution of host-microbe relationships and the importance of maintaining microbial diversity for overall gut health." Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium sp. Positive No 1 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 2049039 QAMT00000000.1 Bac0008742 Roseburia sp. "Roseburia sp. is a nonsporulating, mesophilic bacterium known for its fermentative metabolism and role as a chemoheterotroph. This microbe is primarily found in the intestinal microflora of animals, including humans, where it plays a crucial role in gut health and metabolism. As a member of the human gut microbiota, Roseburia sp. contributes to the fermentation of dietary fibers, producing short-chain fatty acids (SCFAs) such as butyrate, which is vital for colon health and has various beneficial effects on host metabolism. Roseburia species are particularly significant for their association with dietary habits and overall gut microbiome composition. Their abundance has been inversely correlated with several metabolic disorders and inflammatory conditions. Studies suggest that a higher prevalence of Roseburia sp. can be linked to a fiber-rich diet, highlighting the importance of dietary intake in shaping gut microbial communities. Additionally, Roseburia sp. has garnered attention due to its potential therapeutic role in managing conditions like obesity and inflammatory bowel diseases. By modulating the gut microbiota and enhancing butyrate production, this bacterium may help in reducing inflammation and improving metabolic profiles in hosts. In summary, Roseburia sp. exemplifies the intricate interplay between diet, gut microbiota, and host health, emphasizing the importance of maintaining a diverse and balanced microbial community for overall well-being. Its ability to generate energy from fermentation processes and produce beneficial SCFAs reinforces its ecological significance within the gut ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. Positive No 1 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 2049040 DLZP00000000.1 Bac0008743 Erysipelotrichaceae bacterium "The Erysipelotrichaceae bacterium is a gram-positive, rod-shaped microorganism that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in all body sites across various species, requiring an obligate anaerobic environment to survive. As a gram-positive bacterium, its cell wall is composed of a thick peptidoglycan layer, providing it with a robust structure. The rod-shaped morphology allows for efficient movement and colonization in its habitat. Mesophilic temperatures, ranging from 20-45°C, are ideal for the growth and metabolism of this bacterium. As a chemoheterotroph, it relies on organic compounds for energy and carbon sources, breaking down complex molecules to sustain its metabolic processes. The presence of Erysipelotrichaceae bacterium in all body sites, including the gut, skin, and mucous membranes, highlights its adaptability and ability to coexist with various hosts. The obligate anaerobic nature of this bacterium means it cannot survive in the presence of oxygen, instead, it flourishes in environments with low oxygen levels. This adaptation enables it to thrive in environments such as the human gut, where oxygen is limited. The Erysipelotrichaceae bacterium plays a crucial role in the breakdown of complex polysaccharides and production of short-chain fatty acids, contributing to the host's overall health. Research has shown that this bacterium is also involved in the regulation of the immune system and the maintenance of the epithelial barrier, showcasing its significance in the human microbiome. Its presence has been linked to various diseases, including inflammatory bowel disease, highlighting the need for further research into its role in human health." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium Positive No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 2049044 DQGB00000000.1 Bac0008744 Porphyromonadaceae bacterium Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium 2049046 DNQZ00000000.1 Bac0008745 Prevotellaceae bacterium "Currently, very little is known about the microbe 'Prevotellaceae bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotellaceae bacterium 2049047 QAML00000000.1 Bac0008746 Veillonellaceae bacterium "Currently, very little is known about the microbe 'Veillonellaceae bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonellaceae bacterium 2049049 QANF00000000.1 Bac0008747 Nocardioides immobilis str. CCTCC AB 2017083 "Nocardioides immobilis str. CCTCC AB 2017083 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. ↵↵As a member of the Nocardioides genus, this microbe is likely to be involved in the degradation of complex organic compounds, which is characteristic of many members of this genus. The aerobic nature of Nocardioides immobilis str. CCTCC AB 2017083 implies that it requires oxygen for its metabolic processes, which may influence its ecological niche, potentially positioning it within environments rich in organic matter where oxygen is readily available.↵↵The absence of sporulation indicates a reliance on vegetative growth and may reflect its environmental adaptations, which could be significant in maintaining its population in specific habitats. The physiological traits of Nocardioides immobilis str. CCTCC AB 2017083 could make it a valuable organism for biotechnological applications, particularly in bioremediation processes where aerobic degradation of pollutants is essential. Understanding its capabilities in organic matter degradation may provide insights into its role in nutrient cycling and ecosystem functioning." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides immobilis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 2049295 QXGH00000000.1 Bac0008748 Ignavibacteriales bacterium Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriales bacterium 2049428 DLWQ00000000.1 Bac0008749 Chromatiaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Chromatiaceae bacterium 2049432 DQHX00000000.1 Bac0008750 Desulfobacteraceae bacterium Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacteraceae bacterium 2049433 QZKS00000000.1 Bac0008751 Mycobacterium sp. MFM001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. MFM001 2049453 BFAB00000000.1 Bac0008752 Pseudomonas sp. HLS-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. HLS-6 2049589 NZ_CP024478.1 Bac0008753 Streptomyces dengpaensis str. XZHG99 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces dengpaensis 2049881 NZ_CP026652.1 Bac0008754 Methylobacterium currus str. PR1016A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium currus 2051553 NZ_CP028844.1 Bac0008755 Exiguobacterium sp. N4-1P Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. N4-1P 2051906 NZ_CP022239.1 Bac0008756 Methylobacter sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylobacter Methylobacter sp. 2051955 PERX00000000.1 Bac0008757 Methylotenera sp. Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylotenera Methylotenera sp. 2051956 PERB00000000.1 Bac0008758 Parachlamydia sp. Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp. 2052048 PEQL00000000.1 Bac0008759 Anaerolineae bacterium Bacillati Chloroflexota Anaerolineae Anaerolineae bacterium 2052143 QEUX00000000.1 Bac0008760 Blastocatellia bacterium Pseudomonadati Acidobacteriota Blastocatellia Blastocatellia bacterium 2052146 DMCK00000000.1 Bac0008761 Candidatus Aminicenantota bacterium Candidatus Aminicenantota Candidatus Aminicenantota bacterium 2052149 PNJE00000000.1 Bac0008762 Candidatus Melainabacteria bacterium "Currently, very little is known about the microbe 'Candidatus Melainabacteria bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Candidatus Melainabacteria Candidatus Melainabacteria bacterium 2052166 QKMZ00000000.1 Bac0008763 Methylocystaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylocystaceae bacterium 2052174 PQAN00000000.1 Bac0008764 Peptococcaceae bacterium "Peptococcaceae bacterium is a Gram-positive, nonsporulating microbe classified within the family Peptococcaceae, characterized by its anaerobic metabolism and chemoheterotrophic lifestyle. This bacterium primarily relies on fermentative processes for energy, utilizing organic compounds as its carbon source. While the specific habitat of Peptococcaceae bacterium remains unknown, members of this family are commonly found in anaerobic environments, such as deep soil layers, sediments, and within the gastrointestinal tracts of various organisms. As an anaerobe, Peptococcaceae bacterium thrives in oxygen-depleted environments, playing a crucial role in the decomposition of organic matter. By breaking down complex carbohydrates and proteins through fermentation, it contributes to nutrient cycling and the maintenance of soil health. This process is vital for the ecosystem as it helps in the release of essential nutrients back into the soil, promoting the growth of plants and microorganisms. One unique ecological insight regarding Peptococcaceae bacterium is its potential involvement in human gut microbiota. While specific interactions with human hosts are not well documented, other members of the Peptococcaceae family are known to influence gastrointestinal health. They may aid in maintaining a balanced microbial community, which is essential for digestion and immune function. Thus, Peptococcaceae bacterium could play a supportive role in gut health and overall organismal wellness, highlighting the significance of anaerobic bacteria in complex biological systems." Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Peptococcaceae bacterium Positive No 1 Anaerobic Chemoheterotroph Nonsporulating 2052179 DOLC00000000.1 Bac0008765 Phycisphaerales bacterium Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaerales bacterium 2052180 DNAS00000000.1 Bac0008766 Candidatus Dormiibacter spiritus Bacillati Candidatus Dormiibacterota Candidatus Dormibacteria Candidatus Dormibacterales Candidatus Dormibacteraceae Candidatus Dormiibacter Candidatus Dormiibacter spiritus 2052315 QHBT00000000.1 Bac0008767 Dietzia sp. JS16-p6b Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia sp. JS16-p6b 2052657 NZ_CP024869.1 Bac0008768 Oceanobacillus zhaokaii Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus zhaokaii 2052660 NZ_CP024848.1 Bac0008769 Agrobacterium bohemicum str. R89-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium bohemicum 2052828 LNUW00000000.1 Bac0008770 Bifidobacterium callitrichidarum str. TRI 5 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium callitrichidarum 2052941 QFFM00000000.1 Bac0008771 Pseudomonas sp. ACM7 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ACM7 2052956 NZ_CP024866.1 Bac0008772 Bacillus sp. V5-8f Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. V5-8f 2053044 PGUW00000000.1 Bac0008773 Acinetobacter pseudolwoffii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pseudolwoffii 2053287 APRJ00000000.1 Bac0008774 Marinilabiliales bacterium Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliales bacterium 2053303 DNHQ00000000.1 Bac0008775 Desulfobulbaceae bacterium Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbaceae bacterium 2053307 PKTW00000000.1 Bac0008776 Denitrovibrio sp. Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Denitrovibrio Denitrovibrio sp. 2053308 PKTM00000000.1 Bac0008777 Candidatus Thorarchaeota archaeon Promethearchaeati Candidatus Thorarchaeota Candidatus Thorarchaeota archaeon 2053491 PRDJ00000000.1 Bac0008778 Candidatus Acetothermia bacterium Candidatus Bipolaricaulota Candidatus Acetothermia bacterium 2053493 DMDO00000000.1 Bac0008779 Candidatus Atribacter hydrocarboniphilus Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Candidatus Atribacter hydrocarboniphilus 2053509 DNGA00000000.1 Bac0008780 Candidatus Zixiibacteriota bacterium Pseudomonadati Candidatus Zixiibacteriota Candidatus Zixiibacteriota bacterium 2053527 QNAG00000000.1 Bac0008781 Candidatus Cloacimonas sp. Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonadia Candidatus Cloacimonadales Candidatus Cloacimonadaceae Candidatus Cloacimonas Candidatus Cloacimonas sp. 2053534 DPPJ00000000.1 Bac0008782 Candidatus Competibacteraceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Competibacteraceae Candidatus Competibacteraceae bacterium 2053538 RXIW00000000.1 Bac0008783 Cytophagales bacterium Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagales bacterium 2053541 DMST00000000.1 Bac0008784 Desulfofustis sp. Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfofustis Desulfofustis sp. 2053546 DNTE00000000.1 Bac0008785 Hydrogenobaculum sp. Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Hydrogenobaculum Hydrogenobaculum sp. 2053560 PNJC00000000.1 Bac0008786 Kosmotogaceae bacterium Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Kosmotogaceae bacterium 2053567 DLVL00000000.1 Bac0008787 Lentisphaeria bacterium "Currently, very little is known about the microbe 'Lentisphaeria bacterium'. Further research is needed to understand its morphology, metabolism, and ecology." Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaeria bacterium No 1 2053569 DPCG00000000.1 Bac0008788 Candidatus Latescibacterota bacterium Pseudomonadati Candidatus Latescibacterota Candidatus Latescibacterota bacterium 2053570 DPVD00000000.1 Bac0008789 Microscillaceae bacterium Pseudomonadati Bacteroidota Cytophagia Cytophagales Microscillaceae Microscillaceae bacterium 2053581 DMXI00000000.1 Bac0008790 Prolixibacteraceae bacterium Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Prolixibacteraceae bacterium 2053594 DMFR00000000.1 Bac0008791 Candidatus Rokuibacteriota bacterium Candidatus Rokuibacteriota Candidatus Rokuibacteriota bacterium 2053607 QHSB00000000.1 Bac0008792 Sulfurihydrogenibium sp. Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium sp. 2053621 PNIU00000000.1 Bac0008793 Synergistaceae bacterium Thermotogati Synergistota Synergistia Synergistales Synergistaceae Synergistaceae bacterium 2053624 DMFV00000000.1 Bac0008794 Thermotogae bacterium Thermotogati Thermotogota Thermotogota bacterium 2053689 DPRG00000000.1 Bac0008795 Bacillus sp. HBCD-sjtu Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. HBCD-sjtu 2053832 NZ_CP025122.1 Bac0008796 Bacillus sp. M6-12 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. M6-12 2054166 PGVF00000000.1 Bac0008797 Shewanella sp. OPT22 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. OPT22 2054186 PGVH00000000.1 Bac0008798 Kocuria tytonis Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria tytonis 2054280 PNJG00000000.2 Bac0008799 Deinococcus koreensis str. SJW1-2 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus koreensis 2054903 PPPD00000000.1 Bac0008800 Bacillus sp. mrc49 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. mrc49 2054913 PHNG00000000.1 Bac0008801 Pseudomonas sp. 02C 26 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 02C 26 2054914 NZ_CP025262.1 Bac0008802 Pseudomonas tussilaginis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tussilaginis 2054916 NZ_CP088149.1 Bac0008803 Pseudomonas sp. WCS365 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. WCS365 2054929 PHHS00000000.1 Bac0008804 Kyrpidia spormannii Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Kyrpidia Kyrpidia spormannii 2055160 NZ_CP024955.1 Bac0008805 Cyanothece sp. UBA12306 Bacillati Cyanobacteriota Cyanophyceae Gomontiellales Cyanothecaceae Cyanothece Cyanothece sp. UBA12306 2055757 DLXW00000000.1 Bac0008806 Bradyrhizobium sp. AC87j1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. AC87j1 2055894 PTFE00000000.1 Bac0008807 Geobacillus sp. WSUCF-018B Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. WSUCF-018B 2055939 PIJF00000000.1 Bac0008808 Synechococcus sp. BS56D Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. BS56D 2055944 PHQU00000000.1 Bac0008809 Minwuia thermotolerans str. SY3-13 Pseudomonadati Pseudomonadota Alphaproteobacteria Minwuiales Minwuiaceae Minwuia Minwuia thermotolerans 2056226 PHIG00000000.1 Bac0008810 Algoriphagus lacus Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus lacus 2056311 QXML00000000.1 Bac0008811 Candidatus Methanophagaceae archaeon Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagaceae Candidatus Methanophagaceae archaeon 2056316 PQXC00000000.1 Bac0008812 Candidatus Methanophagales archaeon Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagales archaeon 2056316 PIXV00000000.1 Bac0008813 Subtercola vilae str. DB165 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Subtercola Subtercola vilae 2056433 QYRT00000000.1 Bac0008814 Thermoproteota archaeon Thermoproteati Thermoproteota Thermoproteota archaeon 2056631 QMVZ00000000.1 Bac0008815 Pseudomonas sp. HMWF006 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. HMWF006 2056843 QAIU00000000.1 Bac0008816 Aeromonas sp. HMWF014 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. HMWF014 2056850 QAIP00000000.1 Bac0008817 Stenotrophomonas sp. HMWF023 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. HMWF023 2056859 QAIJ00000000.1 Bac0008818 Microbacterium sp. HMWF026 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. HMWF026 2056861 QAJB00000000.1 Bac0008819 Chryseobacterium sp. HMWF028 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. HMWF028 2056862 QAJA00000000.1 Bac0008820 Acidovorax sp. HMWF029 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. HMWF029 2056863 QAIH00000000.1 Bac0008821 Sphingobium sp. 20006FA Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. 20006FA 2056888 LYMJ00000000.1 Bac0008822 Rahnella sp. AA Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rahnella Rahnella sp. AA 2057180 PITQ00000000.1 Bac0008823 Bradyrhizobium sp. SK17 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. SK17 2057741 NZ_CP025114.1 Bac0008824 Lacinutrix sp. Bg11-31 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lacinutrix Lacinutrix sp. Bg11-31 2057808 NZ_CP025118.1 Bac0008825 Bacillus sp. BA3 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. BA3 2057910 PIZR00000000.1 Bac0008826 Arenimonas caeni str. z29 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Arenimonas Arenimonas caeni 2058085 PVLF00000000.1 Bac0008827 Hyphococcus luteus Pseudomonadati Pseudomonadota Alphaproteobacteria Parvularculales Parvularculaceae Hyphococcus Hyphococcus luteus 2058213 PJCH00000000.1 Bac0008828 Stenotrophomonas sp. Betaine-02u-21 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. Betaine-02u-21 2058301 PJAW00000000.1 Bac0008829 Colwellia sp. Bg11-28 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. Bg11-28 2058305 PJBA00000000.1 Bac0008830 Psychrobacter sp. Choline-02u-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. Choline-02u-9 2058310 NZ_CM009120.1 Bac0008831 Flavobacterium sp. ALD4 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. ALD4 2058314 PJBJ00000000.1 Bac0008832 Shewanella sp. GutDb-MelDb Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. GutDb-MelDb 2058316 NZ_CM009123.1 Bac0008833 Psychroflexus sp. MES1-P1E Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Psychroflexus Psychroflexus sp. MES1-P1E 2058320 PJBS00000000.1 Bac0008834 Halomonas sp. MES3-P3E Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. MES3-P3E 2058321 PJBT00000000.1 Bac0008835 Psychrobacter sp. MES7-P7E Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. MES7-P7E 2058322 NZ_CM009133.1 Bac0008836 Psychrobacter sp. Sarcosine-02u-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. Sarcosine-02u-2 2058324 NZ_CM009137.1 Bac0008837 Planococcus sp. Urea-3u-39 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus sp. Urea-3u-39 2058328 PJCB00000000.1 Bac0008838 Shewanella sp. ALD9 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. ALD9 2058330 PJCD00000000.1 Bac0008839 Paraglaciecola sp. MB-3u-78 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Paraglaciecola sp. MB-3u-78 2058332 PJCF00000000.1 Bac0008840 Brumimicrobium salinarum str. LHR20 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Brumimicrobium Brumimicrobium salinarum 2058658 PJNI00000000.1 Bac0008841 Herbaspirillum sp. BH-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum sp. BH-1 2058884 NZ_CM009236.1 Bac0008842 Streptomyces populi str. A249 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces populi 2058924 PJOS00000000.1 Bac0008843 Shewanella sp. Pdp11 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. Pdp11 2059264 NZ_CP015194.1 Bac0008844 Paenibacillus sp. GM2FR Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. GM2FR 2059268 MKZM00000000.1 Bac0008845 Pseudochryseolinea flava str. SDU1-6 Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Pseudochryseolinea Pseudochryseolinea flava 2059302 QMFY00000000.1 Bac0008846 Chromobacterium sp. ATCC 53434 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium sp. ATCC 53434 2059672 NZ_CP025429.1 Bac0008847 Chimaeribacter arupi "Chimaeribacter arupi is a pleomorphic, nonsporulating bacterium predominantly found in the gut of specific host organisms. Although its Gram stain characteristics remain undetermined, this microbe typically exhibits a single-celled arrangement, allowing it to inhabit diverse niches within the gastrointestinal tract. As a facultative anaerobe, Chimaeribacter arupi thrives in both oxygen-rich and oxygen-poor environments, indicating its versatility in adaptation to varying gut conditions. This bacterium is classified as a mesophilic organism, with an optimal growth temperature around 36°C, aligning closely with the average temperature of the mammalian gut. As a chemoheterotroph, Chimaeribacter arupi derives energy from organic compounds, although the specifics of its metabolic pathways remain to be elucidated. This unique metabolic strategy allows it to effectively utilize the complex mixture of nutrients present in the gut environment. One significant ecological insight regarding Chimaeribacter arupi is its potential role in gut health and digestion. By participating in the breakdown of complex carbohydrates and influencing microbial community dynamics, this microbe may contribute to the overall metabolic processes within the gut. Its adaptability to changing oxygen levels further underscores its importance in maintaining a balanced microflora, which is crucial for host health. Ongoing research may unveil further intricacies of its interactions with other microbial inhabitants and its impact on the host organism's physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Chimaeribacter Chimaeribacter arupi Pleomorphic No 1 Facultative Anaerobe 36 Chemoheterotroph Mesophilic Host Gut Singles Nonsporulating 2060066 PJZK00000000.1 Bac0008848 Chimaeribacter coloradensis "Chimaeribacter coloradensis is a Gram-negative bacterium belonging to the family of Chimaeribacteraceae. This microbe exhibits a bacilli shape, which is characteristic of rod-shaped bacteria. While specific details regarding its cell arrangement and sporulation are not currently defined, the organism is known for its adaptability to diverse environments, typically colonizing various ecological niches.The ecological significance of Chimaeribacter coloradensis stems from its roles in biogeochemical cycles, particularly in soils and decaying organic matter. As a member of the microbial community, it likely contributes to the breakdown of complex organic materials, enhancing nutrient availability for plants and other organisms. This bacterium may also participate in interactions with other soil microbes, fostering a balanced ecosystem.In recent studies, Chimaeribacter coloradensis has been acknowledged for its potential biotechnological applications due to its unique metabolic pathways, which may be harnessed for bio-remediation or the sustainable processing of organic waste. This positions it as an organism of interest in the field of environmental microbiology, where understanding its ecological roles could lead to innovative strategies for ecosystem management and restoration." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Chimaeribacter Chimaeribacter coloradensis Negative Rod No 1 2060068 PJZH00000000.1 Bac0008849 Altererythrobacter sp. B11 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Altererythrobacter Altererythrobacter sp. B11 2060312 NZ_AP018498.1 Bac0008850 Caldisphaera sp. Thermoproteati Thermoproteota Thermoprotei Acidilobales Caldisphaeraceae Caldisphaera Caldisphaera sp. 2060322 PNJB00000000.1 Bac0008851 Pseudomonas sp. FFUP_PS_473 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FFUP_PS_473 2060418 PJQQ00000000.1 Bac0008852 Microcystis aeruginosa TA09 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 2060472 QQWA00000000.1 Bac0008853 Microcystis flos-aquae TF09 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis flos-aquae 2060473 QQWC00000000.1 Bac0008854 Microcystis wesenbergii TW10 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis wesenbergii 2060474 QQWD00000000.1 Bac0008855 Neorhizobium sp. SOG26 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium sp. SOG26 2060726 NZ_CP025513.1 Bac0008856 Paracoccus jeotgali Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus jeotgali 2065379 NZ_CP025585.1 Bac0008857 Variovorax sp. RO1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. RO1 2066034 PKMT00000000.1 Bac0008858 Citrobacter freundii complex sp. CFNIH2 str. AATXS Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii complex sp. CFNIH2 2066049 NZ_CP025757.1 Bac0008859 Bacillus sp. UMB0893 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. UMB0893 2066053 PKLB00000000.1 Bac0008860 Mesorhizobium japonicum "Mesorhizobium japonicum is a Gram-negative, rod-shaped bacterium recognized for its role in symbiotic nitrogen fixation, primarily associated with leguminous plants. This bacterium thrives in diverse habitats, suggesting its adaptability to various environmental conditions. As an aerobic organism, M. japonicum requires oxygen for its metabolic processes, which aligns with its ecological niche in soil environments where it interacts with host plants.↵↵The ability of M. japonicum to form nodules on the roots of certain legumes, such as soybeans, enables it to convert atmospheric nitrogen into a biologically available form, thereby enhancing soil fertility. This symbiotic relationship not only supports the growth of its host plants but also contributes to agricultural sustainability by reducing the need for chemical fertilizers.↵↵Moreover, the ecological significance of M. japonicum extends beyond its nitrogen-fixing capabilities; it plays a role in the soil microbiome, influencing microbial community dynamics and nutrient cycling. Understanding the traits and functions of M. japonicum can inform agricultural practices and promote the use of beneficial microbes in sustainable farming systems. Its versatile habitat and aerobic nature underscore the importance of this microbe in both natural ecosystems and agricultural contexts, where it aids in maintaining soil health and fertility." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium japonicum Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 2066070 QKOD00000000.1 Bac0008861 Pseudoalteromonas sp. S410 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S410 2066517 PNDW00000000.1 Bac0008862 Pseudoalteromonas sp. S408 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S408 2066519 PNDY00000000.1 Bac0008863 Pseudoalteromonas sp. S185 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S185 2066522 PNEB00000000.1 Bac0008864 Pseudoalteromonas sp. S2755 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S2755 2066523 PNDS00000000.1 Bac0008865 Rhizobium sp. TH135 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. TH135 2067451 PKRP00000000.1 Bac0008866 Tabrizicola sp. TH137 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tabrizicola Tabrizicola sp. TH137 2067452 PKRQ00000000.1 Bac0008867 Streptomyces sp. DJ Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DJ 2067551 PKSK00000000.1 Bac0008868 Pseudazoarcus pumilus Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Pseudazoarcus Pseudazoarcus pumilus 2067960 NZ_CP025682.1 Bac0008869 Pseudomonas sp. XWY-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. XWY-1 2069256 NZ_CP026333.1 Bac0008870 Lactobacillus sp. ESL0263 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0263 2069350 REHL00000000.1 Bac0008871 Lactobacillus sp. ESL0225 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0225 2069351 REHK00000000.1 Bac0008872 Lactobacillus sp. ESL0233 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0233 2069354 REHH00000000.1 Bac0008873 Lactobacillus sp. ESL0246 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0246 2069359 REHC00000000.1 Bac0008874 Dehalobacter sp. 12DCB1 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Dehalobacter Dehalobacter sp. 12DCB1 2070364 POSF00000000.1 Bac0008875 Nonomuraea aridisoli Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea aridisoli 2070368 POUD00000000.1 Bac0008876 Commensalibacter melissae Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Commensalibacter Commensalibacter melissae 2070537 QGLT00000000.1 Bac0008877 Bacillus sp. PIC28 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. PIC28 2070550 PZPM00000000.1 Bac0008878 Pseudomonas sp. FW305-122 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-122 2070561 PODM00000000.1 Bac0008879 Pseudomonas sp. FW305-3-2-15-C-R2A1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-3-2-15-C-R2A1 2070584 POEJ00000000.1 Bac0008880 Pseudomonas sp. GW247-3R2A Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GW247-3R2A 2070648 POGV00000000.1 Bac0008881 Pseudomonas sp. FW305-131 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-131 2070670 POHR00000000.1 Bac0008882 Bacillus sp. MBGLi79 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MBGLi79 2070759 NZ_CP026521.1 Bac0008883 Vibrio sp. F12 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. F12 2070776 SYUK00000000.1 Bac0008884 Vibrio sp. F13 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. F13 2070777 SYUZ00000000.1 Bac0008885 Plantactinospora sp. BB1 str. BB1 and BC1 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Plantactinospora Plantactinospora sp. BB1 2071627 NZ_CP028159.1 Bac0008886 Stenotrophomonas sp. SAU14A_NAIMI4_5 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. SAU14A_NAIMI4_5 2072413 NZ_CP026003.1 Bac0008887 Bradyrhizobiaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobiaceae bacterium 2072420 RXJB00000000.1 Bac0008888 Actinoalloteichus sp. AHMU CJ021 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinoalloteichus Actinoalloteichus sp. AHMU CJ021 2072503 NZ_CP025990.1 Bac0008889 Streptomyces sp. Go-475 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Go-475 2072505 NZ_CP026121.1 Bac0008890 Ketobacter sp. GenoA1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Ketobacteraceae Ketobacter Ketobacter sp. GenoA1 2072747 RCHM00000000.1 Bac0008891 Adhaeribacter pallidiroseus Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Adhaeribacter Adhaeribacter pallidiroseus 2072847 QASA00000000.1 Bac0008892 Pseudomonas sp. DTU12.3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. DTU12.3 2073078 NZ_CP027218.1 Bac0008893 Holophagae bacterium Pseudomonadati Acidobacteriota Holophagae Holophagae bacterium 2073116 PQAJ00000000.1 Bac0008894 Chromobacterium alticapitis Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium alticapitis 2073169 PQWB00000000.1 Bac0008895 Pseudomonas sp. FW507-12TSA Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW507-12TSA 2075552 PPSC00000000.1 Bac0008896 Pseudomonas sp. GW531-R1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GW531-R1 2075556 PPSG00000000.1 Bac0008897 Candidatus Parvarchaeota archaeon Nanobdellati Candidatus Parvarchaeota Candidatus Parvarchaeota archaeon 2077140 PSQC00000000.1 Bac0008898 Chromobacterium sinusclupearum Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium sinusclupearum 2077146 PPTF00000000.1 Bac0008899 Citrobacter freundii complex sp. CFNIH3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii complex sp. CFNIH3 2077147 NZ_CP026237.1 Bac0008900 Citrobacter freundii complex sp. CFNIH4 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii complex sp. CFNIH4 2077148 NZ_CP026232.1 Bac0008901 Citrobacter freundii complex sp. CFNIH9 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii complex sp. CFNIH9 2077149 NZ_CP026241.1 Bac0008902 Haloferax sp. Atlit-47N Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-47N 2077199 PSYS00000000.1 Bac0008903 Haloferax sp. Atlit-12N Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-12N 2077203 PSYW00000000.1 Bac0008904 Haloferax sp. Atlit-10N Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-10N 2077204 PSYX00000000.1 Bac0008905 Haloferax sp. Atlit-6N Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-6N 2077205 QEQJ00000000.1 Bac0008906 Salipiger sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger sp. 2078585 PACR00000000.1 Bac0008907 Candidatus Tokpelaia sp. JSC188 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Candidatus Tokpelaia Candidatus Tokpelaia sp. JSC188 2079009 QENB00000000.1 Bac0008908 Massilia sp. Mn16-1_5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. Mn16-1_5 2079199 PPXQ00000000.1 Bac0008909 Solitalea longa str. HR-AV Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Solitalea Solitalea longa 2079460 PQVF00000000.1 Bac0008910 Pontibacter arcticus Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter arcticus 2080288 QMDV00000000.1 Bac0008911 Candidatus Dadabacteria bacterium Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria Candidatus Dadabacteria bacterium 2080303 RFGX00000000.1 Bac0008912 Rathayibacter sp. AY1B1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. AY1B1 2080528 PSWO00000000.1 Bac0008913 Rathayibacter sp. AY1C5 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. AY1C5 2080538 PSWD00000000.1 Bac0008914 Pseudoclavibacter sp. RFBG4 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp. RFBG4 2080575 PSYC00000000.1 Bac0008915 Subtercola sp. Z020 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Subtercola Subtercola sp. Z020 2080582 PSTT00000000.1 Bac0008916 Pseudoclavibacter sp. AY1F1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp. AY1F1 2080583 PSTQ00000000.1 Bac0008917 Pseudoclavibacter sp. AY1H1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp. AY1H1 2080584 PSXX00000000.1 Bac0008918 Enterobacter cloacae complex sp. ECNIH11 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae complex sp. ECNIH11 2080662 PQKX00000000.1 Bac0008919 Acinetobacter sp. ABNIH27 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ABNIH27 2080673 PQLQ00000000.1 Bac0008920 Corynebacterium yudongzhengii Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium yudongzhengii 2080740 QEEZ00000000.1 Bac0008921 Streptomyces sp. Ru62 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ru62 2080745 PQSU00000000.1 Bac0008922 Streptomyces sp. Ru73 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ru73 2080748 PQSQ00000000.1 Bac0008923 Corynebacterium pseudopelargi str. 812CH Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudopelargi 2080757 NZ_CP033898.1 Bac0008924 Bacillus sp. DU-106 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. DU-106 2080759 NZ_CP026607.1 Bac0008925 Flavobacterium sp. FEMGT703F Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. FEMGT703F 2080765 PGCN00000000.1 Bac0008926 Sediminibacterium sp. FEMGT703S Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. FEMGT703S 2080766 PGCO00000000.1 Bac0008927 Lelliottia sp. 7254-16 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Lelliottia Lelliottia sp. 7254-16 2080842 PQVS00000000.1 Bac0008928 Actinomyces sp. oral taxon 897 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 897 2081702 NZ_CP027236.1 Bac0008929 Paenibacillus montanisoli str. RA17 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus montanisoli 2081970 QLUW00000000.1 Bac0008930 Methylibium sp. Pch-M Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Methylibium Methylibium sp. Pch-M 2082386 NZ_CP029606.1 Bac0008931 Mesorhizobium sp. Pch-S Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Pch-S 2082387 NZ_CP029562.1 Bac0008932 Microvirga sp. 17 mud 1-3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga sp. 17 mud 1-3 2082949 NZ_CP029481.1 Bac0008933 Pseudomonas sp. SWI36 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SWI36 2083052 NZ_CP026675.1 Bac0008934 Kaistia algarum str. LYH11 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Kaistiaceae Kaistia Kaistia algarum 2083279 PSNV00000000.1 Bac0008935 Streptomyces sp. CB09001 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB09001 2083284 NZ_CP026730.1 Bac0008936 Ketobacter sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Ketobacteraceae Ketobacter Ketobacter sp. 2083498 RCHO00000000.1 Bac0008937 Rhodobacteraceae bacterium WD3A24 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium WD3A24 2086263 PUHN00000000.1 Bac0008938 Desulfarculus sp. Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus sp. 2093367 QZKP00000000.1 Bac0008939 Desulfurivibrio sp. Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfurivibrio Desulfurivibrio sp. 2093369 QZKJ00000000.1 Bac0008940 Streptomyces sp. QL37 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. QL37 2093747 PTJS00000000.2 Bac0008941 Butyricimonas faecalis str. H184 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas faecalis 2093856 NZ_CP032820.1 Bac0008942 Streptomyces sp. WAC00288 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC00288 2094021 NZ_CP027023.1 Bac0008943 Micromonospora sp. MW-13 str. MW13 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. MW-13 2094022 QKKX00000000.1 Bac0008944 Treponema sp. J25 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. J25 2094121 PTQW00000000.1 Bac0008945 Thermoplasma sp. Kam2015 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmataceae Thermoplasma Thermoplasma sp. Kam2015 2094122 QJSM00000000.1 Bac0008946 Corynebacterium sp. J010B-136 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. J010B-136 2099401 PUGE00000000.1 Bac0008947 Desulfuromonadales bacterium Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadales bacterium 2099678 RHLS00000000.1 Bac0008948 Mycobacterium sp. ITM-2016-00318 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ITM-2016-00318 2099693 NZ_CP134400.1 Bac0008949 Lactiplantibacillus koreensis Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. CBA3605 2099788 NZ_CP027192.1 Bac0008950 Lactiplantibacillus kimchii Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. CBA3606 2099789 NZ_CP027195.1 Bac0008951 Photorhabdus luminescens subsp. mexicana Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus luminescens 2100167 PUJX00000000.1 Bac0008952 Brumimicrobium oceani Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Brumimicrobium Brumimicrobium oceani 2100725 QFRJ00000000.1 Bac0008953 Polaribacter aquimarinus Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter aquimarinus 2100726 QFFG00000000.1 Bac0008954 Pleurocapsa sp. CCALA 161 Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Pleurocapsaceae Pleurocapsa Pleurocapsa sp. CCALA 161 2107688 PVWF00000000.1 Bac0008955 Chlorogloea sp. CCALA 695 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Entophysalidaceae Chlorogloea Chlorogloea sp. CCALA 695 2107693 PVWN00000000.1 Bac0008956 Aphanothece hegewaldii CCALA 016 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Aphanothece Aphanothece hegewaldii 2107694 PXOH00000000.1 Bac0008957 Aphanothece cf. minutissima CCALA 015 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Aphanothece Aphanothece minutissima 2107695 PVWP00000000.1 Bac0008958 Cyanosarcina cf. burmensis CCALA 770 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Chroococcaceae Cyanosarcina Cyanosarcina burmensis 2107697 PVWL00000000.1 Bac0008959 Stenomitos frigidus ULC18 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Stenomitos Stenomitos frigidus 2107698 PVWK00000000.1 Bac0008960 filamentous cyanobacterium CCP3 Bacillati Cyanobacteriota filamentous cyanobacterium CCP3 2107704 PYGV00000000.1 Bac0008961 filamentous cyanobacterium Phorm 46 Bacillati Cyanobacteriota filamentous cyanobacterium Phorm 46 2107705 PVWH00000000.1 Bac0008962 filamentous cyanobacterium Phorm 6 Bacillati Cyanobacteriota filamentous cyanobacterium Phorm 6 2107706 PVWI00000000.1 Bac0008963 Lactobacillus paragasseri "Lactobacillus paragasseri is a rod-shaped bacterium that belongs to the genus Lactobacillus, which is well-known for its role in various fermentation processes and its presence in diverse environments, including the gastrointestinal tracts of animals and fermented food products. This species exhibits the characteristic morphology of lactobacilli, with its rod shape facilitating its adaptation to anaerobic or microaerophilic conditions typically found in its ecological niches.↵↵As a member of the lactic acid bacteria group, L. paragasseri is likely involved in the fermentation of carbohydrates, leading to the production of lactic acid, which can contribute to the preservation of food products as well as influencing the gut microbiota composition in hosts. While specific metabolic pathways and biochemical capabilities of L. paragasseri require further investigation, its rod shape is suggestive of a structural adaptation that may enhance its survival and functional efficiency in various environments.↵↵Moreover, the presence of Lactobacillus species, including L. paragasseri, in the gastrointestinal microbiome can play a crucial role in maintaining gut health through the modulation of microbial communities and potential competitive exclusion of pathogenic organisms. Understanding the specific ecological roles and interactions of L. paragasseri within these complex microbial ecosystems may provide valuable insights into its contributions to host health and food fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus paragasseri Rod 2107999 BEXG00000000.1 Bac0008964 Pectobacterium punjabense str. SS95 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium punjabense 2108399 PYSO00000000.1 Bac0008965 Streptomyces sp. CS149 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS149 2109332 PVZY00000000.1 Bac0008966 Streptomyces dioscori Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces dioscori 2109333 PYBJ00000000.1 Bac0008967 Streptomyces sp. SGAir0924 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SGAir0924 2109593 NZ_CP027297.1 Bac0008968 Desulfonatronum sp. SC1 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfonatronaceae Desulfonatronum Desulfonatronum sp. SC1 2109626 PZKN00000000.1 Bac0008969 Hapalosiphonaceae cyanobacterium JJU2 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Hapalosiphonaceae cyanobacterium JJU2 2109628 QLKN00000000.1 Bac0008970 Ottowia oryzae str. KADR8-3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Ottowia Ottowia oryzae 2109914 NZ_CP027666.1 Bac0008971 Simplicispira suum str. SC1-8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Simplicispira Simplicispira suum 2109915 NZ_CP027671.1 Bac0008972 Mesoflavibacter sp. HG96 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mesoflavibacter Mesoflavibacter sp. HG96 2109944 NZ_CP049773.1 Bac0008973 Synechococcus lacustris str. Tous Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus lacustris 2116544 PXVC00000000.1 Bac0008974 Nitrosomonas supralitoralis Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas supralitoralis 2116706 PXXU00000000.1 Bac0008975 Pseudodesulfovibrio hydrargyri str. BerOc1 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio hydrargyri 2125990 LKAQ00000000.1 Bac0008976 Nissabacter sp. SGAir0207 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Nissabacter Nissabacter sp. SGAir0207 2126321 NZ_CP028035.1 Bac0008977 Pedobacter yulinensis str. YL28-9 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter yulinensis 2126353 PYLS00000000.1 Bac0008978 Glycomyces paridis str. CPCC 204357 Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces paridis 2126555 STGX00000000.1 Bac0008979 Clostridium sp. NJ4 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. NJ4 2126737 PYBN00000000.1 Bac0008980 Clostridium fessum "Clostridium fessum is a sporulating, anaerobic bacillus that primarily resides in the intestinal microflora of animals. As a chemoheterotroph, it primarily derives energy through fermentative metabolism, breaking down organic matter in the gut environment. This bacterium plays a significant role in the digestion of complex carbohydrates and contributes to the overall health of the host by facilitating nutrient absorption and maintaining a balanced gut microbiome. C. fessum's sporulating capability allows it to survive in harsh anaerobic conditions, giving it an advantage in its natural habitat, where oxygen levels are low. The ability to form spores also enhances its resilience, enabling it to withstand adverse environmental conditions until favorable growth conditions arise.In terms of its ecological role, C. fessum is not merely a passive inhabitant of the intestine; its metabolic activities can influence the gut environment and the health of its host. For instance, the fermentation processes carried out by this microbe can lead to the production of short-chain fatty acids, which serve as energy sources for the host's epithelial cells and play a crucial role in gut health and immunity. Moreover, the balance between different microbial species, including C. fessum, can affect the overall microbial composition, which is critical for preventing dysbiosis—a condition associated with various gastrointestinal diseases. Thus, C. fessum embodies the intricate relationships within the gut ecosystem, highlighting the importance of microbial diversity for host well-being." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium fessum Positive Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Singles Sporulating 2126740 PYLO00000000.1 Bac0008981 Nitratireductor sp. StC3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor sp. StC3 2126741 PYBP00000000.1 Bac0008982 Acinetobacter stercoris Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter stercoris 2126983 OOGT00000000.1 Bac0008983 Pseudoprevotella muciniphila Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Pseudoprevotella Pseudoprevotella muciniphila 2133944 NZ_CP033459.1 Bac0008984 Bradyrhizobium sp. MOS003 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. MOS003 2133946 PYFW00000000.1 Bac0008985 Pantoea sp. PNA 03-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. PNA 03-3 2135460 QICO00000000.1 Bac0008986 Pseudomonas sp. OV226 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. OV226 2135588 QGGS00000000.1 Bac0008987 Loktanella sp. PT4BL Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Loktanella Loktanella sp. PT4BL 2135611 QJJL00000000.1 Bac0008988 Arenibacter sp. ARW7G5Y1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Arenibacter Arenibacter sp. ARW7G5Y1 2135619 QJJZ00000000.1 Bac0008989 Acidovorax sp. 100 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 100 2135635 REFD00000000.1 Bac0008990 Acidovorax sp. 106 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 106 2135637 RCCC00000000.1 Bac0008991 Allobosea sp. 124 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. 124 2135642 PZZM00000000.1 Bac0008992 Rhizobium sp. PP-CC-2G-626 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PP-CC-2G-626 2135646 SLXY00000000.1 Bac0008993 Rhizobium sp. PP-F2F-G48 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PP-F2F-G48 2135651 SLVH00000000.1 Bac0008994 Rhizobium sp. PP-WC-2G-219 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PP-WC-2G-219 2135653 SLUV00000000.1 Bac0008995 Sphingomonas sp. PP-CC-3G-468 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. PP-CC-3G-468 2135656 SLUY00000000.1 Bac0008996 Sphingomonas sp. PP-CE-1A-559 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. PP-CE-1A-559 2135657 SLYA00000000.1 Bac0008997 Sphingomonas sp. PP-CE-3G-477 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. PP-CE-3G-477 2135660 QAOF00000000.1 Bac0008998 Sphingomonas sp. PP-F2F-A104-K0414 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. PP-F2F-A104-K0414 2135661 SLYD00000000.1 Bac0008999 Sphingomonas sp. PP-F2F-G114-C0414 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. PP-F2F-G114-C0414 2135662 RCWT00000000.1 Bac0009000 Luteibacter sp. OK325 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter sp. OK325 2135670 QAOX00000000.1 Bac0009001 Paenisporosarcina sp. OV554 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Paenisporosarcina Paenisporosarcina sp. OV554 2135694 QBUC00000000.1 Bac0009002 Promicromonospora sp. AC04 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Promicromonospora Promicromonospora sp. AC04 2135723 QBUG00000000.1 Bac0009003 Rhodococcus sp. OK519 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. OK519 2135729 QAOW00000000.1 Bac0009004 Aminobacter sp. AP02 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aminobacter Aminobacter sp. AP02 2135737 QGGX00000000.1 Bac0009005 Pseudomonas sp. GV047 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GV047 2135751 QCWA00000000.1 Bac0009006 Marinicauda salina Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Marinicauda Marinicauda salina 2135793 QEXV00000000.1 Bac0009007 Streptomyces sp. So13.3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. So13.3 2136173 NZ_CP048835.1 Bac0009008 Deinococcus arcticus Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus arcticus 2136176 PYSV00000000.1 Bac0009009 Acinetobacter cumulans Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter cumulans 2136182 NZ_CP035938.1 Bac0009010 Halomonas sp. SL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. SL1 2137478 PYUQ00000000.2 Bac0009011 Pseudoxanthomonas composti str. GSS15 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas composti 2137479 SAWZ00000000.1 Bac0009012 Escherichia sp. 4726-5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. 4726-5 2137852 PYQY00000000.1 Bac0009013 Lactobacillus sp. PFC-70 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. PFC-70 2138308 PZQL00000000.1 Bac0009014 Rhodococcus sp. KBW08 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. KBW08 2144188 QAJJ00000000.1 Bac0009015 Klebsiella huaxiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella huaxiensis 2153354 NZ_CP036175.1 Bac0009016 Variovorax sp. KBW07 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. KBW07 2153358 QAJK00000000.1 Bac0009017 Paucibacter sp. KBW04 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Paucibacter sp. KBW04 2153361 QAJN00000000.1 Bac0009018 Herminiimonas sp. KBW02 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herminiimonas Herminiimonas sp. KBW02 aerobic 2153363 QAJP00000000.1 Bac0009019 Burkholderia sp. AU29985 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. AU29985 2153378 QBJZ00000000.1 Bac0009020 Flavobacterium sp. WLB Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. WLB 2161662 QCWV00000000.1 Bac0009021 Pseudomonas mangrovi Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mangrovi 2161748 QASN00000000.1 Bac0009022 Glaciecola sp. KUL10 "Glaciecola sp. KUL10 is a Gram-negative bacterium notable for its distinctive morphological and physiological traits. This microorganism is part of the Glaciecola genus, which is characterized by its adaptation to cold environments, suggesting that Glaciecola sp. KUL10 may thrive in polar or glacial habitats. The Gram-negative nature of this strain indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of many bacteria that inhabit diverse ecological niches.↵↵While specific metabolic pathways and growth conditions for Glaciecola sp. KUL10 are not detailed in the provided traits, the genus Glaciecola is generally known for its versatility in utilizing various substrates, potentially allowing it to play a significant role in nutrient cycling in its native environment. The adaptability of Gram-negative bacteria, including those within this genus, often contributes to their resilience in fluctuating environmental conditions, including temperature and nutrient availability.↵↵Furthermore, the presence of Glaciecola sp. KUL10 in glacial regions could imply its involvement in biogeochemical processes, such as the degradation of organic matter or the cycling of carbon and nitrogen in these cold ecosystems. This highlights the potential ecological significance of Glaciecola sp. KUL10 in maintaining the balance of microbial communities in cryospheric environments, further underscoring the importance of studying such microorganisms to understand their roles in global biogeochemical cycles." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Glaciecola Glaciecola sp. KUL10 Gram-negative 2161813 BGNG00000000.1 Bac0009023 Spartobacteria bacterium LR76 Pseudomonadati Verrucomicrobiota Spartobacteria Spartobacteria bacterium LR76 2161866 QAYZ00000000.1 Bac0009024 Verrucomicrobia bacterium LW23 Pseudomonadati Verrucomicrobiota Verrucomicrobia bacterium LW23 2161867 QAZA00000000.1 Bac0009025 Bacteroides sp. PHL 2737 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. PHL 2737 2162637 NZ_CP040633.1 Bac0009026 Streptomyces sp. CS081A Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS081A 2162709 QBHX00000000.1 Bac0009027 Marinilabilia rubra str. WTE16 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Marinilabilia Marinilabilia rubra 2162893 QEWP00000000.1 Bac0009028 Candidatus Poseidoniales archaeon Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Poseidoniales archaeon 2163009 QOOV00000000.1 Bac0009029 Orrella marina Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Orrella Orrella marina 2163011 NZ_CP028901.1 Bac0009030 Vibrio sp. dhg Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. dhg 2163016 NZ_CP028943.1 Bac0009031 Piscirickettsiaceae bacterium NZ-RLO2 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsiaceae bacterium NZ-RLO2 2163606 QBEV00000000.1 Bac0009032 Cyanobium sp. Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium sp. 2164130 QBMG00000000.1 Bac0009033 Paragemmobacter aquarius Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paragemmobacter Paragemmobacter aquarius 2169400 NZ_CP028920.1 Bac0009034 Flavobacterium laiguense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium laiguense 2169409 QCZH00000000.1 Bac0009035 Flavobacterium psychrotolerans Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrotolerans 2169410 QCZI00000000.1 Bac0009036 Blastocatellia bacterium AA13 Pseudomonadati Acidobacteriota Blastocatellia Blastocatellia bacterium AA13 2169413 QHVH00000000.1 Bac0009037 Flavobacterium sp. HTF Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. HTF 2170732 QETH00000000.1 Bac0009038 Auritidibacter sp. NML120636 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Auritidibacter Auritidibacter sp. NML120636 2170743 QHLO00000000.1 Bac0009039 Auritidibacter sp. NML120779 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Auritidibacter Auritidibacter sp. NML120779 2170744 QHLN00000000.1 Bac0009040 Pueribacillus theae str. T8 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pueribacillus Pueribacillus theae 2171751 QCZG00000000.1 Bac0009041 Arthrobacter sp. Bz4 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Bz4 2171979 QDAE00000000.1 Bac0009042 Flavobacterium pallidum str. HYN0049 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium pallidum 2172098 NZ_CP029187.1 Bac0009043 Limnobaculum parvum str. HYN0051 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Budviciaceae Limnobaculum Limnobaculum parvum 2172103 NZ_CP029185.2 Bac0009044 Candidatus Brocadia sp. Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Brocadia Candidatus Brocadia sp. 2172549 QEUK00000000.1 Bac0009045 Candidatus Zhuqueibacterota bacterium Pseudomonadati Candidatus Zhuqueibacterota bacterium 2172550 QNDE00000000.1 Bac0009046 Caulobacter radicis str. 695 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter radicis 2172650 QDKO00000000.1 Bac0009047 Petrocella atlantisensis Bacillati Bacillota Clostridia Lachnospirales Vallitaleaceae Petrocella Petrocella atlantisensis 2173034 NZ_LR130778.1 Bac0009048 Streptomyces tirandamycinicus str. HNM0039 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tirandamycinicus 2174846 NZ_CP029188.1 Bac0009049 Sphingomonas pokkalii str. L3B27 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas pokkalii 2175090 QENQ00000000.1 Bac0009050 Flavobacterium album str. HYN0059 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium album 2175091 NZ_CP029186.1 Bac0009051 Ancrocorticia populi Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Ancrocorticia Ancrocorticia populi 2175228 QETB00000000.1 Bac0009052 Curtobacterium sp. MCJR17_020 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCJR17_020 2175619 NZ_CP126261.1 Bac0009053 Curtobacterium sp. MCLR17_036 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_036 2175620 NZ_CP126269.1 Bac0009054 Curtobacterium sp. MCBD17_026 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBD17_026 2175621 NZ_CP126281.1 Bac0009055 Curtobacterium sp. MCLR17_039 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_039 2175624 QKTF00000000.1 Bac0009056 Curtobacterium sp. MCLR17_054 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_054 2175632 NZ_CP126265.1 Bac0009057 Curtobacterium sp. MCPF17_021 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCPF17_021 2175639 NZ_CP126252.1 Bac0009058 Curtobacterium sp. MCSS17_005 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCSS17_005 2175641 NZ_CP126258.1 Bac0009059 Curtobacterium sp. MCSS17_011 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCSS17_011 2175643 QKLE00000000.1 Bac0009060 Curtobacterium sp. MCPF17_002 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCPF17_002 2175645 NZ_CP126251.1 Bac0009061 Curtobacterium sp. MCLR17_007 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_007 2175648 NZ_CP126272.1 Bac0009062 Curtobacterium sp. MCBD17_030 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBD17_030 2175649 QKLI00000000.1 Bac0009063 Curtobacterium sp. MCBD17_008 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBD17_008 2175656 QKTK00000000.1 Bac0009064 Curtobacterium sp. MCBD17_021 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBD17_021 2175665 QKTS00000000.1 Bac0009065 Curtobacterium sp. MCBD17_040 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCBD17_040 2175674 NZ_CP126273.1 Bac0009066 Erythrobacter aureus Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter aureus 2182384 NZ_CP031358.1 Bac0009067 Sediminicurvatus halobius Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Sediminicurvatus Sediminicurvatus halobius 2182432 QFFI00000000.1 Bac0009068 Abyssibacter profundi str. OUC007 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Oceanococcaceae Abyssibacter Abyssibacter profundi 2182787 QEQK00000000.1 Bac0009069 Flavobacterium crocinum str. HYN0056 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium crocinum 2183896 NZ_CP029255.1 Bac0009070 Rhizobium sp. AG855 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. AG855 2183898 RAQG00000000.1 Bac0009071 Erwinia sp. AG740 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia sp. AG740 2183904 QJJH00000000.1 Bac0009072 Rhodobacter sp. 140A Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter sp. 140A 2183910 QNSD00000000.1 Bac0009073 Nocardiopsis sp. Huas11 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis sp. Huas11 2183912 RBKY00000000.1 Bac0009074 Halanaerobium sp. ST460_2HS_T2 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium sp. ST460_2HS_T2 2183914 QPJF00000000.1 Bac0009075 Burkholderia sp. 28_3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. 28_3 2183921 QKZF00000000.1 Bac0009076 Halomonas sp. A11-A Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. A11-A 2183985 QGTM00000000.1 Bac0009077 Salegentibacter sp. 24 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Salegentibacter Salegentibacter sp. 24 2183986 SNWE00000000.1 Bac0009078 Curtobacterium sp. AG1037 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. AG1037 2183990 QQAO00000000.1 Bac0009079 Microbacterium sp. AG157 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. AG157 2183993 QRDK00000000.1 Bac0009080 Chryseobacterium sp. AG844 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. AG844 2183998 QGTV00000000.1 Bac0009081 Flavobacterium sp. AG291 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. AG291 2184000 QQAR00000000.1 Bac0009082 Bacillus sp. AG102 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AG102 2184001 QPKA00000000.1 Bac0009083 Bacillus sp. AG236 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AG236 2184002 QPJX00000000.1 Bac0009084 Micrococcus sp. KT16 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus sp. KT16 2184005 QNRG00000000.1 Bac0009085 Streptomyces cadmiisoli Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cadmiisoli 2184053 NZ_CP030073.1 Bac0009086 Candidatus Nitrotoga sp. SPKER Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellaceae Candidatus Nitrotoga Candidatus Nitrotoga sp. SPKER 2184312 QFXG00000000.1 Bac0009087 Burkholderia sp. Bp9004 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp9004 2184559 QTQD00000000.1 Bac0009088 Burkholderia sp. Bp9012 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp9012 2184562 QTQA00000000.1 Bac0009089 Burkholderia sp. Bp9017 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp9017 2184565 QTPX00000000.1 Bac0009090 Burkholderia sp. Bp9031 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp9031 2184566 QTPW00000000.1 Bac0009091 Burkholderia sp. Bp9126 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp9126 2184570 QTPS00000000.1 Bac0009092 Burkholderia sp. Bp9131 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp9131 2184571 QTPR00000000.1 Bac0009093 Acetobacterium sp. KB-1 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Acetobacterium Acetobacterium sp. KB-1 anaerobic 2184575 NZ_CP030040.1 Bac0009094 Arthrobacter sp. AQ5-05 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. AQ5-05 2184581 QMKQ00000000.1 Bac0009095 Legionella qingyii Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella qingyii 2184757 QHJG00000000.1 Bac0009096 Rhodoferax lacus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax lacus 2184758 QFZK00000000.1 Bac0009097 Streptomyces sp. NWU339 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NWU339 2185284 QFRK00000000.1 Bac0009098 Amycolatopsis echigonensis str. dsm 45165 "Amycolatopsis echigonensis strain DSM 45165 is a Gram-positive bacterium that thrives in aerobic environments, exhibiting optimal growth at a temperature of 29.0 °C. This strain is a member of the genus Amycolatopsis, which is known for its capacity to produce various bioactive compounds, including antibiotics. The Gram-positive nature of A. echigonensis indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria, potentially contributing to its resilience in different environmental conditions.↵↵Optimal growth at 29.0 °C suggests that A. echigonensis may be well-suited to moderate temperature habitats, which could include soil or decaying organic matter where it may play a role in nutrient cycling. Its strict aerobic requirement implies that this organism relies on oxygen for its metabolic processes, which could influence its distribution and ecological interactions in various environments.↵↵Given its traits, A. echigonensis strain DSM 45165 may be particularly adept at colonizing environments where organic matter decomposition occurs, thus contributing to the breakdown of complex organic compounds. Furthermore, the potential for bioactive compound production underscores its significance in biotechnological applications, possibly leading to the discovery of novel antimicrobial agents. This underscores the importance of studying such microorganisms not only for their ecological roles but also for their potential utility in medicine and industry." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis echigonensis Gram-positive non-motile aerobic 29 mesophilic 2200763 PJMY00000000.1 Bac0009099 endosymbiont of Lamellibrachia luymesi Pseudomonadati Pseudomonadota Gammaproteobacteria endosymbiont of Lamellibrachia luymesi 2200907 QFXD00000000.1 Bac0009100 endosymbiont of Escarpia spicata Pseudomonadati Pseudomonadota Gammaproteobacteria endosymbiont of Escarpia spicata 2200908 QFXE00000000.1 Bac0009101 Flavobacteriaceae bacterium LYZ1037 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium LYZ1037 2200952 QFWS00000000.1 Bac0009102 Streptomyces sp. NWU49 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NWU49 2201153 QFXB00000000.1 Bac0009103 Pseudonocardiales bacterium Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiales bacterium 2201155 QHBZ00000000.1 Bac0009104 Pseudomonas sp. Leaf98 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Leaf98 2201171 QFZI00000000.1 Bac0009105 Pseudomonas sp. 31-12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 31-12 2201356 NZ_CP029482.1 Bac0009106 Nocardioides silvaticus Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides silvaticus 2201891 QGDD00000000.1 Bac0009107 Micromonospora sp. B006 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. B006 2201999 NZ_CP030865.1 Bac0009108 Streptomyces sp. NEAU-S7GS2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NEAU-S7GS2 2202000 NZ_CP029542.1 Bac0009109 Ruminococcaceae bacterium R-25 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium R-25 2202136 QGFZ00000000.1 Bac0009110 Chromobacterium phragmitis Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium phragmitis 2202141 NZ_CP029554.1 Bac0009111 Spirochaetes bacterium Pseudomonadati Spirochaetota Spirochaetota bacterium 2202144 QNBK00000000.1 Bac0009112 Azospirillum thermophilum Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum thermophilum 2202148 NZ_CP029356.1 Bac0009113 Thermodesulfobacteria bacterium Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteriota bacterium 2202153 QNAY00000000.1 Bac0009114 Pseudomonas sp. RIT411 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RIT411 2202160 QBIZ00000000.2 Bac0009115 Candidatus Methylumidiphilus alinenensis Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Candidatus Methylumidiphilus Candidatus Methylumidiphilus alinenensis 2202197 QJPH00000000.1 Bac0009116 Leptospira yasudae Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira yasudae 2202201 QHCR00000000.1 Bac0009117 Streptosporangium sp. 'caverna' Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium sp. 'caverna' 2202249 NZ_CP029711.1 Bac0009118 Pseudomonas sp. RW405 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RW405 2202652 QHJD00000000.1 Bac0009119 Nitrosopumilaceae archaeon Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilaceae archaeon 2202732 UYNY00000000.3 Bac0009120 Methylobacterium sp. 17Sr1-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. 17Sr1-1 2202826 NZ_CP029552.1 Bac0009121 Pseudomonas sp. RW407 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RW407 2202894 QGSL00000000.1 Bac0009122 Pseudomonas sp. RW409 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RW409 2202895 QHHP00000000.1 Bac0009123 Actinomadura sp. WAC 06369 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. WAC 06369 2203193 QHJN00000000.1 Bac0009124 Streptomyces sp. WAC 01438 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 01438 2203204 NZ_CP029601.1 Bac0009125 Streptomyces sp. WAC 01529 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 01529 2203205 NZ_CP029617.1 Bac0009126 Streptomyces sp. WAC 04229 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 04229 2203206 QHJH00000000.1 Bac0009127 Streptomyces sp. WAC 05977 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 05977 2203208 QHJM00000000.1 Bac0009128 Streptomyces sp. WAC 06738 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 06738 2203210 NZ_CP029618.1 Bac0009129 Pedobacter paludis Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter paludis 2203212 QGNY00000000.1 Bac0009130 Micromonospora inaquosa str. LB39 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora inaquosa 2203716 QGSZ00000000.1 Bac0009131 Ensifer sp. M14 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. M14 2203782 QJNR00000000.1 Bac0009132 Zavarzinia aquatilis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Zavarziniaceae Zavarzinia Zavarzinia aquatilis 2211142 QGLE00000000.1 Bac0009133 Stenotrophomonas sp. pho Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. pho 2211160 NZ_CP029759.1 Bac0009134 Evtepia gabavorous str. KLE1738 Bacillati Bacillota Clostridia Eubacteriales Evtepia Evtepia gabavorous No 1 Chemoheterotroph Animal Intestinal Microflora 2211183 QQRQ00000000.1 Bac0009135 Vibrio sp. 11986-1-5 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 11986-1-5 2211215 QHMB00000000.1 Bac0009136 Stutzerimonas kirkiae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas kirkiae 2211392 QJUP00000000.1 Bac0009137 Flavobacterium hydrophilum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium hydrophilum 2211445 QJHL00000000.1 Bac0009138 Calditrichota bacterium Pseudomonadati Calditrichota Calditrichota bacterium 2212469 RFIL00000000.1 Bac0009139 Calditrichaeota bacterium Pseudomonadati Calditrichota Calditrichota bacterium 2212469 RFHE00000000.1 Bac0009140 Fictibacillus sp. S7 Bacillati Bacillota Bacilli Caryophanales Fictibacillaceae Fictibacillus Fictibacillus sp. S7 2212476 QJKL00000000.1 Bac0009141 Clostridium sp. AWRP Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AWRP 2212991 NZ_CP029758.2 Bac0009142 Marinomonas piezotolerans str. YLB-05 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas piezotolerans 2213058 QKRA00000000.1 Bac0009143 Pseudomonas sp. MB-090624 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MB-090624 2213078 QJRK00000000.1 Bac0009144 Pseudomonas sp. LB-090624 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LB-090624 2213079 QJRL00000000.1 Bac0009145 Nocardia mangyaensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia mangyaensis 2213200 NZ_CP018082.1 Bac0009146 Planococcus lenghuensis Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus lenghuensis 2213202 NZ_CP019641.1 Bac0009147 Prochlorococcus marinus XMU1408 "Prochlorococcus marinus XMU1408 is a gram-negative, coccoid cyanobacterium that thrives in marine aquatic environments. As a photosynthetic organism, it harnesses light energy to drive its metabolic processes, contributing significantly to primary production in oligotrophic waters. This strain is characterized by its small cell size, which facilitates efficient nutrient uptake in nutrient-poor habitats. Prochlorococcus marinus is known for its remarkable adaptability to various light conditions, allowing it to occupy niches where other phytoplankton may struggle to survive.↵↵The presence of specialized pigments enables Prochlorococcus marinus XMU1408 to absorb light at different wavelengths, optimizing its photosynthetic efficiency in varying depths of the water column. This adaptability not only highlights its ecological significance but also underscores its role in carbon cycling within marine ecosystems. Given its proficiency in utilizing light energy and its prevalence in open ocean waters, Prochlorococcus marinus XMU1408 serves as a crucial player in the marine food web and contributes to the overall biogeochemical processes in the ocean. Its existence emphasizes the importance of microbial life in maintaining the health and balance of marine environments, particularly in regions where nutrient availability is limited." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 2213228 QJUE00000000.1 Bac0009148 Halosegnis longus Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halosegnis Halosegnis longus 2216012 RJJC00000000.1 Bac0009149 Halonotius aquaticus Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius aquaticus 2216978 QKNY00000000.1 Bac0009150 Natronomonas salsuginis Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas salsuginis 2217661 QKNX00000000.1 Bac0009151 Pseudomonas sp. SGAir0191 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SGAir0191 2217867 NZ_CP025035.2 Bac0009152 Burkholderia sp. JP2-270 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. JP2-270 2217913 NZ_CP029824.1 Bac0009153 Capsulimonas corticalis str. AX-7 Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis 2219043 NZ_AP025739.1 Bac0009154 Sphingomonas sp. FARSPH Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 2219696 NZ_CP029986.1 Bac0009155 Synechococcus elongatus PCC 11801 "Synechococcus elongatus PCC 11801 is a Gram-negative, rod-shaped cyanobacterium characterized by its ability to form chains or exist as single cells. As a photoautotroph, this organism derives its energy through photosynthesis, utilizing light to convert carbon dioxide and water into organic compounds, which positions it as an essential player in aquatic ecosystems. ↵↵Living in aquatic habitats, S. elongatus PCC 11801 exhibits facultative oxygen requirements, indicating its capacity to thrive in varying oxygen conditions. This adaptability suggests a versatile metabolic flexibility, allowing it to occupy diverse niches within its environment, potentially contributing to primary production in both well-oxygenated and hypoxic conditions.↵↵The ecological significance of S. elongatus PCC 11801 lies in its role in carbon fixation and oxygen production, contributing to the overall dynamics of aquatic ecosystems. Its ability to thrive in different oxygen levels may also provide insights into microbial community resilience in the face of fluctuating environmental conditions, particularly in response to climate change or anthropogenic influences." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus elongatus Negative Rod Yes 1 2 Facultative Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Chains - Singles 2219813 NZ_CP143533.1 Bac0009156 Sinomicrobium soli Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Sinomicrobium Sinomicrobium soli 2219864 QLNV00000000.1 Bac0009157 Roseicella frigidaeris Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseicella Roseicella frigidaeris 2230885 QLIX00000000.1 Bac0009158 Hydrogenothermus sp. Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Hydrogenothermus Hydrogenothermus sp. 2231113 QNYP00000000.1 Bac0009159 Actinomadura craniellae Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura craniellae 2231787 QLYX00000000.1 Bac0009160 Mesorhizobium atlanticum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium atlanticum 2233532 QMBQ00000000.1 Bac0009161 Flavobacterium tibetense str. YH5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium tibetense 2233533 QLST00000000.1 Bac0009162 Enterococcus sp. VV15 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. VV15 2233541 QPTY00000000.1 Bac0009163 Marinilabiliaceae bacterium JC017 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Marinilabiliaceae bacterium JC017 2234116 RHGE00000000.1 Bac0009164 Halorubrum sp. 48-1-W str. 48_1_W Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. 48-1-W 2249761 QMIM00000000.1 Bac0009165 Candidatus Altarchaeales archaeon Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon 2250256 QMZH00000000.1 Bac0009166 Microcaldota archaeon Nanobdellati Microcaldota Microcaldota archaeon 2250274 QMVF00000000.1 Bac0009167 Thermoprotei archaeon Thermoproteati Thermoproteota Thermoprotei Thermoprotei archaeon 2250277 QMRG00000000.1 Bac0009168 Blastococcus sp. TF02-8 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. TF02-8 2250574 QOHK00000000.1 Bac0009169 Geodermatophilus sp. TF02-6 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus sp. TF02-6 2250575 QOHF00000000.1 Bac0009170 Chryseobacterium pennipullorum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium pennipullorum 2258963 QNVV00000000.1 Bac0009171 Chryseobacterium sp. 5_R23647 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. 5_R23647 2258964 QNVW00000000.1 Bac0009172 Chitinophaga flava str. GDMCC 1.1325 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga flava 2259036 QFFJ00000000.1 Bac0009173 Pedobacter miscanthi Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter miscanthi 2259170 QNQU00000000.1 Bac0009174 Runella rosea Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Runella Runella rosea 2259595 NZ_CP030856.1 Bac0009175 Streptomyces sp. YIM 130001 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. YIM 130001 2259644 QODG00000000.1 Bac0009176 Rhodovulum sp. BSW8 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sp. BSW8 2259645 QNVX00000000.1 Bac0009177 Synechococcus sp. MED-G68 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. MED-G68 2267259 QOPS00000000.1 Bac0009178 Alteromonas sp. RKMC-009 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. RKMC-009 2267264 NZ_CP032914.1 Bac0009179 Streptomyces sp. SDr-06 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SDr-06 2267702 QOLA00000000.1 Bac0009180 Pseudomonas sp. SST3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SST3 2267882 QORI00000000.2 Bac0009181 Runella sp. SP2 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Runella Runella sp. SP2 2268026 NZ_CP031033.1 Bac0009182 Microbacterium sp. ABRD28 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. ABRD28 2268461 NZ_CP031015.1 Bac0009183 Listeria sp. SHR_NRA_18 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria sp. SHR_NRA_18 2269046 QPKR00000000.1 Bac0009184 Haloarcula sp. Atlit-7R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula sp. Atlit-7R 2282125 QXIK00000000.1 Bac0009185 Halobellus sp. Atlit-38R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus sp. Atlit-38R 2282131 QXIJ00000000.1 Bac0009186 Haloferax sp. Atlit-109R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-109R 2282134 QPLO00000000.1 Bac0009187 Corallincola holothuriorum Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Psychromonadaceae Corallincola Corallincola holothuriorum 2282215 QPID00000000.1 Bac0009188 Billgrantia montanilacus Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia montanilacus 2282305 QPII00000000.1 Bac0009189 Vreelandella rituensis Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella rituensis 2282306 QPIJ00000000.1 Bac0009190 Leclercia sp. W17 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Leclercia sp. W17 2282309 NZ_CP031101.1 Bac0009191 Halomonas sp. DQ26W Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. DQ26W 2282311 QPKI00000000.1 Bac0009192 Streptococcus hillyeri Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus hillyeri 2282420 RCVM00000000.1 Bac0009193 Exiguobacterium sp. RIT594 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. RIT594 2282449 QPKF00000000.1 Bac0009194 Chitinophaga silvatica Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga silvatica 2282649 QPMM00000000.1 Bac0009195 Streptomyces corynorhini Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces corynorhini 2282652 QQNA00000000.1 Bac0009196 Agarivorans sp. Toyoura001 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Agarivorans Agarivorans sp. Toyoura001 2283141 BJEQ00000000.1 Bac0009197 Sporosarcina sp. PTS2304 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. PTS2304 2283194 NZ_CP031230.1 Bac0009198 Streptomyces sp. S816 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. S816 2283197 QQVZ00000000.1 Bac0009199 Sphingomonas aracearum Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas aracearum 2283317 QQNB00000000.1 Bac0009200 Psychrilyobacter sp. S5 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Psychrilyobacter Psychrilyobacter sp. S5 anaerobic 2283384 QQOU00000000.1 Bac0009201 Oceanispirochaeta sp. M1 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Oceanispirochaeta Oceanispirochaeta sp. M1 2283433 QQPQ00000000.1 Bac0009202 Paracoccus sp. JM45 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sp. JM45 2283626 QQVY00000000.1 Bac0009203 Ancylomarina euxinus Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Ancylomarina Ancylomarina euxina 2283627 QQWG00000000.1 Bac0009204 Lysobacter sp. TY2-98 str. Junwon Lee Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. TY2-98 2290922 NZ_CP031413.1 Bac0009205 Crenobacter cavernae Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Crenobacter Crenobacter cavernae 2290923 REGR00000000.1 Bac0009206 Ruminococcaceae bacterium AM07-15 "Currently, very little is known about the microbe 'Ruminococcaceae bacterium AM07-15'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium AM07-15 No 1 2291991 QUDE00000000.1 Bac0009207 Absiella sp. AM09-45 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacterium Absiella sp. AM09-45 2291993 QVFJ00000000.1 Bac0009208 Bacteroides sp. AM07-16 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM07-16 2292000 QRMU00000000.1 Bac0009209 Clostridium sp. AF37-5AT Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF37-5AT 2292007 QUDQ00000000.1 Bac0009210 Coprobacillus sp. AF33-1AC Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AF33-1AC 2292032 QRQB00000000.1 Bac0009211 Coprobacillus sp. AF34-1BH Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AF34-1BH 2292033 QUEA00000000.1 Bac0009212 Lachnotalea sp. AF33-28 "Currently, very little is known about the microbe 'Lachnotalea sp. AF33-28'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnotalea Lachnotalea sp. AF33-28 No 1 2292046 QUEE00000000.1 Bac0009213 Mitsuokella sp. AF33-22 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Mitsuokella Mitsuokella sp. AF33-22 2292047 QRQA00000000.1 Bac0009214 Parabacteroides sp. AF48-14 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AF48-14 2292052 QUDI00000000.1 Bac0009215 Parabacteroides sp. AM08-6 "Parabacteroides sp. AM08-6 is a Gram-negative bacterium characterized by its distinct cellular morphology and biochemical properties. This microorganism is part of the genus Parabacteroides, which is predominantly found in the gastrointestinal tracts of various animals, including humans. As a member of the Bacteroidetes phylum, Parabacteroides sp. AM08-6 is known for its role in the fermentation of complex polysaccharides, contributing to the breakdown of dietary fibers within the gut environment. ↵↵The Gram-negative nature of Parabacteroides sp. AM08-6 implies the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structural feature not only plays a critical role in the organism's cellular integrity but also influences its interactions with the host's immune system and other gut microbiota.↵↵While specific pathogenic potential or detailed ecological functions have not been delineated for this strain, the genus Parabacteroides is generally associated with beneficial roles in maintaining gut health and modulating immune responses. This indicates that Parabacteroides sp. AM08-6 may participate in complex interactions within the gut microbiome, potentially influencing metabolic processes and host health. Understanding the specific contributions of Parabacteroides sp. AM08-6 within its ecological niche could provide insights into its role in gut homeostasis and the broader implications for microbial diversity in health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AM08-6 Negative 2292053 QRMP00000000.1 Bac0009216 Prevotella sp. AM23-5 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. AM23-5 2292054 QUCG00000000.1 Bac0009217 Ruminococcus sp. AF41-9 "Ruminococcus sp. AF41-9 is a chemoheterotrophic bacterium that plays a significant role in the intestinal microflora of animals, particularly ruminants. This species is part of the diverse community of microorganisms residing in the gastrointestinal tract, where it contributes to the digestion of complex carbohydrates, including cellulose and hemicellulose, derived from plant materials. Ruminococcus sp. AF41-9 is particularly important for its ability to break down lignocellulosic substrates, which are otherwise indigestible by the host animal, thereby facilitating nutrient absorption and energy production for the host. The habitat of Ruminococcus sp. AF41-9, within the animal intestinal microflora, positions it as a key player in the symbiotic relationship between ruminants and their microbial inhabitants. These interactions not only aid in the digestion process but also influence the overall health and metabolic efficiency of the host. Moreover, its ability to thrive in the unique conditions of the ruminant digestive system suggests potential adaptations to a highly variable environment, marked by fluctuations in pH and nutrient availability. An intriguing ecological insight into Ruminococcus sp. AF41-9 is its potential impact on methane production in ruminants. By enhancing the breakdown of fibrous plant materials, this microbe may indirectly influence the amount of methane generated during digestion, thereby contributing to the greenhouse gas emissions associated with livestock. Understanding the role of such microbes could inform strategies to mitigate methane emissions in agriculture, promoting sustainable livestock management and reducing environmental impacts." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF41-9 Positive Cocci No 1 Chemoheterotroph Animal Intestinal Microflora 2292069 QUDO00000000.1 Bac0009218 Ruminococcus sp. AF45-4BH Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF45-4BH 2292071 QUDK00000000.1 Bac0009219 Veillonella sp. AF42-16 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. AF42-16 2292078 QRNT00000000.1 Bac0009220 Clostridiaceae bacterium AF18-31LB Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium AF18-31LB 2292182 QUGS00000000.1 Bac0009221 Bacteroides sp. AF26-7BH Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF26-7BH 2292193 QRTS00000000.1 Bac0009222 Butyricicoccus sp. AF22-28AC Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AF22-28AC 2292198 QUFY00000000.1 Bac0009223 Clostridium sp. AF12-28 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF12-28 2292201 QUHP00000000.1 Bac0009224 Clostridium sp. AF19-22AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF19-22AC 2292204 QUGN00000000.1 Bac0009225 Eubacterium sp. AF22-9 "Currently, very little is known about the microbe 'Eubacterium sp. AF22-9'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AF22-9 Positive 2292233 QRVH00000000.1 Bac0009226 Parabacteroides sp. AF14-59 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AF14-59 2292240 QUHH00000000.1 Bac0009227 Pseudoflavonifractor sp. AF19-9AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor sp. AF19-9AC 2292244 QUGI00000000.1 Bac0009228 Ruminococcus sp. AF13-37 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF13-37 2292246 QRZX00000000.1 Bac0009229 Ruminococcus sp. AF17-22AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF17-22AC 2292248 QRXT00000000.1 Bac0009230 Ruminococcus sp. AF18-22 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF18-22 2292249 QRXE00000000.1 Bac0009231 Levilactobacillus suantsaii str. BCRC 12945 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus suantsaii 2292255 QXIL00000000.1 Bac0009232 Sphingorhabdus pulchriflava Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Sphingorhabdus Sphingorhabdus pulchriflava 2292257 QRGP00000000.1 Bac0009233 Clostridiaceae bacterium OF09-1 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium OF09-1 2292276 QUMI00000000.1 Bac0009234 Bacteroides sp. OM08-17BH Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. OM08-17BH 2292285 QSTC00000000.1 Bac0009235 Butyricicoccus sp. AM28-25 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AM28-25 2292294 QUJL00000000.1 Bac0009236 Butyricicoccus sp. AM32-19 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AM32-19 2292296 QUIX00000000.1 Bac0009237 Butyricicoccus sp. TM10-16AC Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. TM10-16AC 2292302 QUKA00000000.1 Bac0009238 Clostridium sp. AM58-1XD "Clostridium sp. AM58-1XD is a Gram-positive bacterium belonging to the genus Clostridium, which is known for its ability to form spores and thrive in anaerobic environments. While specific traits regarding its morphology, metabolism, or physiological characteristics are not provided, the classification as a Gram-positive organism suggests that it possesses a thick peptidoglycan layer in its cell wall, which is a hallmark of this group. ↵↵Clostridia are often found in diverse habitats, including soil, sediments, and the gastrointestinal tracts of animals, where they typically play roles in organic matter decomposition and nutrient cycling. The ability to exist in anaerobic conditions is a significant trait that allows members of this genus to occupy ecological niches that are inhospitable to many other microorganisms, thus contributing to the overall microbial diversity and functionality of their environments.↵↵Given the traits of Clostridium sp. AM58-1XD, it may play a role in anaerobic fermentation processes, potentially influencing the breakdown of complex organic materials in ecosystems where it is present. Understanding the specific environmental conditions and interactions of this strain could provide valuable insights into its ecological functions and applications in biotechnology or environmental remediation." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM58-1XD Positive 2292307 QSDR00000000.1 Bac0009239 Eisenbergiella sp. OF01-20 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eisenbergiella Eisenbergiella sp. OF01-20 2292348 QUES00000000.1 Bac0009240 Eubacterium sp. AM46-8 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AM46-8 2292350 QSEU00000000.1 Bac0009241 Eubacterium sp. AM49-13BH Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AM49-13BH 2292351 QSEK00000000.1 Bac0009242 Faecalibacterium sp. OF03-6AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. OF03-6AC 2292356 QUEN00000000.1 Bac0009243 Roseburia sp. AM51-8 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AM51-8 2292366 QUEY00000000.1 Bac0009244 Roseburia sp. OF03-24 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. OF03-24 2292367 QSCK00000000.1 Bac0009245 Ruminococcus sp. AM28-41 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM28-41 2292369 QUJJ00000000.1 Bac0009246 Ruminococcus sp. AM29-26 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM29-26 2292370 QUJE00000000.1 Bac0009247 Ruminococcus sp. AM42-11 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM42-11 2292372 QUIO00000000.1 Bac0009248 Streptomyces sp. AcE210 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AcE210 2292703 QURC00000000.1 Bac0009249 Aeromicrobium endophyticum Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium endophyticum 2292704 QUBR00000000.1 Bac0009250 Flagellimonas nanhaiensis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas nanhaiensis 2292706 QTJX00000000.1 Bac0009251 Firmicutes bacterium AM55-24TS "Currently, very little is known about the microbe 'Firmicutes bacterium AM55-24TS'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Firmicutes bacterium AM55-24TS 2292896 QTVU00000000.1 Bac0009252 Firmicutes bacterium OM08-11AC Bacillati Bacillota Firmicutes bacterium OM08-11AC 2292899 QUKX00000000.1 Bac0009253 Lachnospiraceae bacterium AM10-38 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium AM10-38 2292902 QUDB00000000.1 Bac0009254 Lachnospiraceae bacterium AM21-21 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium AM21-21 2292903 QUCN00000000.1 Bac0009255 Lachnospiraceae bacterium AM26-1LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium AM26-1LB 2292906 QUJW00000000.1 Bac0009256 Acidaminococcus sp. AM33-14BH Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus sp. AM33-14BH 2292909 QTNG00000000.1 Bac0009257 Alistipes sp. AM16-43 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. AM16-43 2292911 QTUQ00000000.1 Bac0009258 Bacteroides sp. AF14-46 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF14-46 2292914 QUHJ00000000.1 Bac0009259 Bacteroides sp. AF15-14LB Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF15-14LB 2292915 QTMS00000000.1 Bac0009260 Bacteroides sp. AF17-1 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF17-1 2292919 QTMN00000000.1 Bac0009261 Bacteroides sp. AF25-38AC Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF25-38AC 2292924 QTMD00000000.1 Bac0009262 Bacteroides sp. AF29-11 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF29-11 2292928 QTLY00000000.1 Bac0009263 Bacteroides sp. AF32-15BH Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF32-15BH 2292929 QTLX00000000.1 Bac0009264 Bacteroides sp. AM16-13 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM16-13 2292938 QTLK00000000.1 Bac0009265 Bacteroides sp. AM18-9 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM18-9 2292940 QTLG00000000.1 Bac0009266 Bacteroides sp. AM26-2 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM26-2 2292946 QTNO00000000.1 Bac0009267 Bacteroides sp. AM27-13 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM27-13 2292947 QTNM00000000.1 Bac0009268 Bacteroides sp. AM32-11AC Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM32-11AC 2292950 QTNH00000000.1 Bac0009269 Bacteroides sp. CF01-10NS Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CF01-10NS 2292956 QTMY00000000.1 Bac0009270 Blautia sp. AF14-40 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AF14-40 2292958 QUHK00000000.1 Bac0009271 Blautia sp. AF19-1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AF19-1 2292960 QUGQ00000000.1 Bac0009272 Blautia sp. AF22-5LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AF22-5LB 2292964 QUFX00000000.1 Bac0009273 Blautia sp. AF32-4BH Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AF32-4BH 2292967 QTVL00000000.1 Bac0009274 Blautia sp. AF34-10 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AF34-10 2292968 QUED00000000.1 Bac0009275 Blautia sp. OF03-13 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. OF03-13 2292980 QTVR00000000.1 Bac0009276 Blautia sp. OM05-6 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. OM05-6 2292983 QULI00000000.1 Bac0009277 Blautia sp. OM07-19 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. OM07-19 2292985 QULA00000000.1 Bac0009278 Blautia sp. TF10-30 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. TF10-30 2292986 QUKM00000000.1 Bac0009279 Blautia sp. TM10-2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. TM10-2 2292990 QUJZ00000000.1 Bac0009280 Clostridium sp. AF12-41 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF12-41 2292994 QTXO00000000.1 Bac0009281 Clostridium sp. AF15-31 "Clostridium sp. AF15-31 is a microorganism primarily found in the intestinal microflora of animals, playing a significant role in the gut ecosystem. This bacterium belongs to the genus Clostridium, which is renowned for its diverse metabolic capabilities and anaerobic lifestyle, although specific details about its Gram stain, shape, and sporulation are not yet documented. As a member of the intestinal microflora, Clostridium sp. AF15-31 participates in the complex interactions of gut microbiota, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are essential for the health and function of the host's intestinal environment. This bacterium may play a role in nutrient absorption and can influence the immune response of the host, highlighting its potential importance in maintaining gut homeostasis. Ecologically, Clostridium sp. AF15-31 exemplifies the delicate balance within the gut microbiome, where various microbial species coexist and interact. These interactions can affect the host's metabolic pathways and overall health. By understanding its specific functions and relationships within the gastrointestinal tract, there is potential for exploiting this microbe in therapeutic applications, such as restoring gut flora balance in cases of dysbiosis or enhancing animal health in agricultural practices. This underscores the significance of studying gut-associated microbes not only for their biological roles but also for their potential applications in medicine and agriculture." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF15-31 Positive No 1 Animal Intestinal Microflora 2292995 QTXL00000000.1 Bac0009282 Clostridium sp. AF15-6B Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF15-6B 2292998 QTXJ00000000.1 Bac0009283 Clostridium sp. AF17-2 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF17-2 2293000 QUGW00000000.1 Bac0009284 Clostridium sp. AF23-8 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF23-8 2293006 QUFV00000000.1 Bac0009285 Clostridium sp. AF24-2LB Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF24-2LB 2293007 QUFT00000000.1 Bac0009286 Clostridium sp. AF29-8BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF29-8BH 2293009 QUEL00000000.1 Bac0009287 Clostridium sp. AF36-4 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF36-4 2293015 QTVH00000000.1 Bac0009288 Clostridium sp. AF43-10 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF43-10 2293018 QUDL00000000.1 Bac0009289 Clostridium sp. AF46-9NS Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF46-9NS 2293020 QTUY00000000.1 Bac0009290 Clostridium sp. AF50-3 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF50-3 2293021 QUDH00000000.1 Bac0009291 Clostridium sp. AM09-51 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM09-51 2293022 QUDC00000000.1 Bac0009292 Clostridium sp. AM18-55 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM18-55 2293023 QUCO00000000.1 Bac0009293 Clostridium sp. AM27-31LB Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM27-31LB 2293026 QUJS00000000.1 Bac0009294 Clostridium sp. AM28-20LB Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM28-20LB 2293027 QUJN00000000.1 Bac0009295 Clostridium sp. AM43-3BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM43-3BH 2293032 QUIH00000000.1 Bac0009296 Clostridium sp. AM49-4BH "Clostridium sp. AM49-4BH is an anaerobic bacterium that belongs to the Clostridium genus, known for its diverse metabolic capabilities and ecological significance. This microbe thrives in oxygen-depleted environments, such as sediments, gastrointestinal tracts of animals, and decaying organic matter, where it plays a crucial role in nutrient cycling and organic matter decomposition.While specific details regarding its Gram stain, shape, and sporulation status are not provided, members of the Clostridium genus are typically characterized by their ability to form spores, which enable them to withstand harsh environmental conditions. Clostridium sp. AM49-4BH is likely implicated in fermentation processes, producing various metabolites such as short-chain fatty acids, which can serve as energy sources for other microorganisms and host organisms. This bacterium's anaerobic lifestyle positions it as a key player in the microbiome of various ecosystems, contributing to the breakdown of complex organic compounds. Furthermore, its presence in the gastrointestinal tract of certain animals suggests it may have symbiotic relationships with its hosts, aiding in digestion and nutrient absorption. The ecological insight into Clostridium sp. AM49-4BH underscores the importance of anaerobic microorganisms in maintaining ecosystem health and stability, particularly in their roles in biogeochemical cycles and their potential applications in biotechnology for waste treatment and bioenergy production." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM49-4BH Positive No 1 Anaerobic 2293035 QUFB00000000.1 Bac0009297 Clostridium sp. AM51-4 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM51-4 2293036 QUEZ00000000.1 Bac0009298 Clostridium sp. AM54-14XD Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM54-14XD 2293037 QUEW00000000.1 Bac0009299 Clostridium sp. OF10-22XD Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OF10-22XD 2293039 QUMB00000000.1 Bac0009300 Clostridium sp. OF13-4 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OF13-4 2293040 QULZ00000000.1 Bac0009301 Clostridium sp. OM05-9BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OM05-9BH 2293046 QULE00000000.1 Bac0009302 Coprobacillus sp. AF16-47 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AF16-47 2293062 QTXE00000000.1 Bac0009303 Coprobacillus sp. AM28-15LB Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AM28-15LB 2293078 QUJO00000000.1 Bac0009304 Coprobacillus sp. AM29-13 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AM29-13 2293079 QUJG00000000.1 Bac0009305 Coprococcus sp. OM04-5BH "Coprococcus sp. OM04-5BH is a microorganism belonging to the diverse phylum Firmicutes, primarily identified in the intestinal microflora of animals. This bacterium plays a significant role in the complex ecosystem of the gut, contributing to the fermentation of dietary fibers and the metabolism of various carbohydrates. Coprococcus species are known to produce short-chain fatty acids (SCFAs) as metabolic end products, which are vital for maintaining gut health and influencing host metabolism. While specific metabolic pathways and energy sources of Coprococcus sp. OM04-5BH remain to be defined, related members of the genus are recognized for their ability to thrive on complex polysaccharides, thereby helping in the breakdown of indigestible dietary components. This function supports not only the host's digestion but also shapes the overall microbial community dynamics within the intestine, promoting a symbiotic relationship between the host and its gut microbiota. The ecological significance of Coprococcus sp. OM04-5BH extends beyond mere digestion; it is involved in modulating immune responses and potentially influencing the development of various metabolic disorders. By producing SCFAs, it may help in reducing inflammation, thereby playing a protective role against conditions such as obesity and type 2 diabetes. Overall, Coprococcus sp. OM04-5BH exemplifies the intricate interdependence between microbial flora and host health, highlighting its potential as a target for probiotic development and therapeutic interventions in gut-related diseases." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. OM04-5BH Positive Cocci No 1 Animal Intestinal Microflora 2293093 QULM00000000.1 Bac0009306 Dorea sp. OM07-5 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea sp. OM07-5 2293100 QUKZ00000000.1 Bac0009307 Erysipelatoclostridium sp. AM42-17 "Erysipelatoclostridium sp. AM42-17 is a Gram-positive bacterium characterized by its unique morphological and physiological traits. This microbe is part of the Clostridiaceae family and exhibits the typical rod-shaped morphology associated with many members of this group. As a Gram-positive organism, Erysipelatoclostridium sp. AM42-17 possesses a thick peptidoglycan layer in its cell wall, which can influence its resistance to environmental stressors and contribute to its survival in various habitats.↵↵While specific metabolic capabilities and growth conditions for Erysipelatoclostridium sp. AM42-17 are not detailed, Gram-positive bacteria often display diverse metabolic pathways, including fermentative processes. This suggests that Erysipelatoclostridium sp. AM42-17 may play a role in nutrient cycling within its environment, potentially contributing to the breakdown of organic materials.↵↵The ecological implications of Erysipelatoclostridium sp. AM42-17 may be significant, particularly in anaerobic environments where Clostridia are commonly found. These microorganisms are known for their ability to thrive in low-oxygen conditions, which could allow Erysipelatoclostridium sp. AM42-17 to contribute to ecological processes such as soil health and organic matter decomposition. Further studies would be necessary to elucidate its specific ecological role and interactions within microbial communities." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Erysipelatoclostridium sp. AM42-17 Positive 2293102 QUIN00000000.1 Bac0009308 Eubacterium sp. AF19-12LB Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AF19-12LB 2293106 QUGP00000000.1 Bac0009309 Odoribacter sp. AF21-41 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter sp. AF21-41 2293111 QTWN00000000.1 Bac0009310 Parabacteroides sp. AF19-14 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AF19-14 2293114 QTMJ00000000.1 Bac0009311 Parabacteroides sp. AF27-14 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AF27-14 2293116 QTLZ00000000.1 Bac0009312 Parabacteroides sp. AM44-16 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AM44-16 2293122 QTNC00000000.1 Bac0009313 Parabacteroides sp. OF01-14 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. OF01-14 2293123 QTMX00000000.1 Bac0009314 Parabacteroides sp. OF04-13BH Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. OF04-13BH 2293124 QTMV00000000.1 Bac0009315 Prevotella sp. AM42-24 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. AM42-24 2293125 QTXV00000000.1 Bac0009316 Roseburia sp. AF02-12 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AF02-12 2293126 QTXS00000000.1 Bac0009317 Roseburia sp. AF12-17LB "Roseburia sp. AF12-17LB is a Gram-positive bacterium characterized by its distinct cell wall structure, which is typical of many members within the Firmicutes phylum. This microbial strain is notable for its role in the gastrointestinal tract, where it contributes to the complex microbial ecosystem. As a member of the Roseburia genus, it is likely involved in the fermentation of dietary fibers, leading to the production of short-chain fatty acids (SCFAs), which are beneficial for gut health.↵↵The Gram-positive nature of Roseburia sp. AF12-17LB suggests that it possesses a thick peptidoglycan layer, which may offer it resilience in the competitive environment of the gut microbiota. This trait is often linked to the bacterium's ability to survive in varying conditions and to adhere to the gut epithelium, potentially influencing host interactions.↵↵Understanding the metabolic capabilities of Roseburia sp. AF12-17LB can provide insights into its functional role in gut health and disease prevention. This strain may play a vital part in maintaining colonic health through its contributions to the gut microbiome's diversity and stability. Furthermore, its ability to ferment specific substrates could position it as a key player in the modulation of host metabolic processes, highlighting the intricate relationships between diet, gut microbiota, and human health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AF12-17LB Positive 2293127 QUHR00000000.1 Bac0009318 Roseburia sp. AF25-13LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AF25-13LB 2293132 QUFO00000000.1 Bac0009319 Roseburia sp. AF25-18LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AF25-18LB 2293134 QUFM00000000.1 Bac0009320 Roseburia sp. AM59-24XD "Roseburia sp. AM59-24XD is a beneficial anaerobic bacterium known for its role in butyrate production, residing predominantly in the intestinal microflora of animals. This species is part of a larger group of gut bacteria that contributes to the health of the host by fermenting dietary fibers and producing short-chain fatty acids (SCFAs), particularly butyrate, which serves as a vital energy source for colonocytes and plays a crucial role in maintaining gut health. As a chemoheterotroph, Roseburia sp. AM59-24XD utilizes complex carbohydrates derived from the host’s diet, making it an essential player in the digestion of fiber-rich foods. The production of butyrate not only provides energy for intestinal cells but also influences the immune response and maintains the integrity of the gut barrier. Furthermore, butyrate has been linked to various health benefits, including anti-inflammatory effects and the potential reduction of colon cancer risks. The ecological significance of Roseburia sp. AM59-24XD extends beyond its metabolic contributions; its presence and abundance in the gut microbiota can reflect the dietary patterns and health status of the host. A decrease in butyrate-producing bacteria, such as Roseburia sp., has been associated with various gastrointestinal disorders, highlighting its role as a microbial marker for gut health. This association underscores the importance of promoting a diet rich in fiber to sustain a diverse and functional gut microbiome, thereby supporting not just individual health but also the overall balance of the intestinal ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AM59-24XD Positive No 1 Chemoheterotroph Animal Intestinal Microflora 2293138 QUET00000000.1 Bac0009321 Roseburia sp. TF10-5 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. TF10-5 2293144 QTYW00000000.1 Bac0009322 Ruminococcus sp. AF18-29 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF18-29 2293156 QTWT00000000.1 Bac0009323 Ruminococcus sp. AF19-15 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF19-15 2293157 QTWR00000000.1 Bac0009324 Ruminococcus sp. AF25-13 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF25-13 2293163 QTWH00000000.1 Bac0009325 Ruminococcus sp. AF25-23LB Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF25-23LB 2293166 QUFL00000000.1 Bac0009326 Ruminococcus sp. AF25-28AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF25-28AC 2293167 QUFJ00000000.1 Bac0009327 Ruminococcus sp. AF31-8BH "Currently, very little is known about the microbe 'Ruminococcus sp. AF31-8BH'. Further research is needed to understand its morphology, metabolism, and ecology." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF31-8BH Positive Cocci 2293174 QTVN00000000.1 Bac0009328 Ruminococcus sp. AF32-2AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF32-2AC 2293175 QTVM00000000.1 Bac0009329 Ruminococcus sp. AF34-12 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF34-12 2293177 QTVK00000000.1 Bac0009330 Ruminococcus sp. AF37-3AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF37-3AC 2293179 QTVD00000000.1 Bac0009331 Ruminococcus sp. AM16-34 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM16-34 2293184 QTUR00000000.1 Bac0009332 Ruminococcus sp. AM18-44 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM18-44 2293186 QUCP00000000.1 Bac0009333 Ruminococcus sp. AM28-13 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM28-13 2293194 QTYO00000000.1 Bac0009334 Ruminococcus sp. AM29-12LB Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM29-12LB 2293198 QUJH00000000.1 Bac0009335 Ruminococcus sp. AM42-10AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM42-10AC 2293215 QUIP00000000.1 Bac0009336 Ruminococcus sp. AM49-8 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM49-8 2293223 QTVW00000000.1 Bac0009337 Ruminococcus sp. AM54-14NS Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM54-14NS 2293225 QUEX00000000.1 Bac0009338 Ruminococcus sp. AM54-1NS Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM54-1NS 2293226 QTVV00000000.1 Bac0009339 Ruminococcus sp. AM57-5 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM57-5 2293227 QTVT00000000.1 Bac0009340 Ruminococcus sp. OF05-2BH Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. OF05-2BH 2293230 QTZL00000000.1 Bac0009341 Ruminococcus sp. OM08-9BH Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. OM08-9BH 2293236 QTYZ00000000.1 Bac0009342 Ruminococcus sp. TF12-2 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. TF12-2 2293243 QTYU00000000.1 Bac0009343 Ruminococcus sp. TM09-4 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. TM09-4 2293244 QUKB00000000.1 Bac0009344 Tannerella sp. AF04-6 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella sp. AF04-6 2293248 QUHW00000000.1 Bac0009345 Lysobacter silvisoli Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter silvisoli 2293254 QTSU00000000.1 Bac0009346 Bacillus sp. dmp10 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. dmp10 2293321 QUQR00000000.1 Bac0009347 Bacillus sp. HNG Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. HNG 2293325 QUQV00000000.1 Bac0009348 Streptomyces triticagri Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces triticagri 2293568 QUAK00000000.1 Bac0009349 Jiangella rhizosphaerae Bacillati Actinomycetota Actinomycetes Jiangellales Jiangellaceae Jiangella Jiangella rhizosphaerae 2293569 QUAL00000000.1 Bac0009350 Streptomyces inhibens Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces inhibens 2293571 QUAC00000000.1 Bac0009351 Acinetobacter sp. SWAC57 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. SWAC57 2293834 QUWS00000000.1 Bac0009352 Thermaerobacter sp. PB12/4term Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Thermaerobacter Thermaerobacter sp. PB12/4term 2293838 NZ_CP048407.1 Bac0009353 Sphaerochaeta halotolerans str. 4-11 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta halotolerans 2293840 QUWK00000000.1 Bac0009354 Methanocalculus sp. MSAO_Arc1 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocalculaceae Methanocalculus Methanocalculus sp. MSAO_Arc1 2293854 QZAD00000000.1 Bac0009355 Ruegeria sp. AD91A Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. AD91A 2293862 NZ_CP031947.1 Bac0009356 Acinetobacter sp. JW Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. JW 2302364 QUZJ00000000.1 Bac0009357 Vibrio sinensis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sinensis 2302434 QVMU00000000.1 Bac0009358 Emticicia sp. C21 Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia sp. C21 2302915 QVMT00000000.1 Bac0009359 Bacteroides sp. AF32-8BH Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF32-8BH 2302925 QVLZ00000000.1 Bac0009360 Faecalibacterium sp. AF10-46 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. AF10-46 2302955 QVGY00000000.1 Bac0009361 Paraburkholderia sp. DHOC27 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. DHOC27 2303330 QVQV00000000.1 Bac0009362 Actinomadura spongiicola Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura spongiicola 2303421 QVNQ00000000.1 Bac0009363 Rhodobacteraceae bacterium W635 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Nioella Nioella halotolerans 2303578 QVQC00000000.1 Bac0009364 Geodermatophilus sp. LHW52908 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus marinus 2303986 QVQH00000000.1 Bac0009365 Motilimonas pumila Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Motilimonas Motilimonas pumila 2303987 QZCH00000000.1 Bac0009366 Methylococcales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcales bacterium 2304002 QVQD00000000.1 Bac0009367 Sphingobium terrigena Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium terrigena 2304063 QVRA00000000.1 Bac0009368 Marinobacter sp. Arc7-DN-1 str. MCCC 1K03540 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. Arc7-DN-1 2304594 NZ_CP031848.1 Bac0009369 Zhongshania marina Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Zhongshania Zhongshania marina 2304603 PQGG00000000.1 Bac0009370 Ureibacillus yapensis Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Ureibacillus Ureibacillus yapensis 2304605 QWEI00000000.1 Bac0009371 Colwellia ponticola Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia ponticola 2304625 SZVP00000000.1 Bac0009372 Streptomyces sp. W1SF4 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. W1SF4 2305220 NZ_CP034350.1 Bac0009373 Clostridium sp. AM25-23AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM25-23AC 2305240 QWGI00000000.1 Bac0009374 Henriciella mobilis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Henriciella Henriciella mobilis 2305467 QWFX00000000.1 Bac0009375 Brevundimonas sp. LPMIX5 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. LPMIX5 2305887 QWTZ00000000.1 Bac0009376 Fibrisoma montanum Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Fibrisoma Fibrisoma montanum 2305895 QXED00000000.1 Bac0009377 Sphingomonas gilva Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas gilva 2305907 QWLV00000000.1 Bac0009378 Gemmobacter lutimaris str. YJ-T1-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Gemmobacter Gemmobacter lutimaris 2306023 QXXQ00000000.1 Bac0009379 Bifidobacterium callimiconis Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium callimiconis 2306973 QXGJ00000000.1 Bac0009380 Bifidobacterium samirii Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium samirii 2306974 QXGK00000000.1 Bac0009381 Bifidobacterium goeldii Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium goeldii 2306975 QXGL00000000.1 Bac0009382 Paenirhodobacter populi Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paenirhodobacter Paenirhodobacter populi 2306993 SAUX00000000.1 Bac0009383 Aurantiacibacter zhengii Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter zhengii 2307003 QXFL00000000.1 Bac0009384 Sphingomonas ginkgonis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas ginkgonis 2315330 RWJF00000000.1 Bac0009385 Exiguobacterium sp. RIT452 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. RIT452 2315552 QXJB00000000.1 Bac0009386 Pseudomonas sp. LS-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LS-2 2315859 QXTJ00000000.1 Bac0009387 Mediterraneibacter butyricigenes "Mediterraneibacter butyricigenes is a distinct microorganism belonging to the diverse ecosystem of animal intestinal microflora. This bacterium is characterized primarily by its fermentative metabolism, which allows it to break down organic compounds to generate energy. As a chemoheterotroph, M. butyricigenes relies on organic matter as its energy source, playing a significant role in the anaerobic fermentation processes within the intestines. Notably, M. butyricigenes is nonsporulating, indicating that it does not form spores for survival under adverse conditions. This trait, combined with its habitat within the intestinal environment, suggests that the bacterium thrives in the stable and nutrient-rich ecosystems provided by animal hosts. The presence of such a microorganism is essential for maintaining gut health, as it contributes to the fermentation of dietary fibers and the production of short-chain fatty acids (SCFAs), notably butyrate. Butyrate serves crucial functions, including providing energy for colonic epithelial cells and modulating immune responses. Exploring the ecological role of M. butyricigenes is particularly intriguing due to its potential influence on host metabolism and health. By participating in the fermentation of complex carbohydrates, this microbe not only aids in nutrient absorption but also plays a vital role in maintaining gut homeostasis. The interactions between M. butyricigenes and other gut microbiota highlight the intricate relationships that define the gut ecosystem, emphasizing the importance of microbial diversity in overall health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter butyricigenes Positive No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 2316025 BHGK00000000.1 Bac0009388 Lichenibacterium ramalinae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Lichenihabitantaceae Lichenibacterium Lichenibacterium ramalinae 2316527 QYBC00000000.1 Bac0009389 Lichenibacterium minor Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Lichenihabitantaceae Lichenibacterium Lichenibacterium minor 2316528 QYBB00000000.1 Bac0009390 Corallococcus sp. AB030 Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AB030 2316716 RAWQ00000000.1 Bac0009391 Corallococcus sp. AB032C Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AB032C 2316717 RAWP00000000.1 Bac0009392 Corallococcus sp. AB050B Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AB050B 2316723 RAWJ00000000.1 Bac0009393 Corallococcus sicarius Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sicarius 2316726 RAWG00000000.1 Bac0009394 Corallococcus sp. CA047B Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CA047B 2316729 RAWD00000000.1 Bac0009395 Corallococcus sp. CA053C Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CA053C 2316732 RAWA00000000.1 Bac0009396 Corallococcus terminator Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus terminator 2316733 RAVZ00000000.1 Bac0009397 Corallococcus sp. CA054B Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CA054B 2316734 RAVY00000000.1 Bac0009398 Corallococcus sp. AB011P Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AB011P 2316735 RAVX00000000.1 Bac0009399 Sphingomonas paeninsulae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas paeninsulae 2319844 NZ_CP032829.1 Bac0009400 Acutalibacter sp. 1XD8-33 Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Acutalibacter Acutalibacter sp. 1XD8-33 2320081 RAZF00000000.1 Bac0009401 Clostridium sp. 1xD42-85 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. 1xD42-85 2320084 RAYN00000000.1 Bac0009402 Parabacteroides sp. CH2-D42-20 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. CH2-D42-20 2320086 RAYG00000000.1 Bac0009403 bacterium 0.1xD8-71 bacterium 0.1xD8-71 2320099 RAYR00000000.1 Bac0009404 bacterium 1XD21-70 bacterium 1XD21-70 2320103 RAYB00000000.1 Bac0009405 bacterium D16-54 bacterium D16-54 2320104 RAYZ00000000.1 Bac0009406 bacterium C-53 bacterium C-53 2320109 RAZD00000000.1 Bac0009407 bacterium 1XD42-54 bacterium 1XD42-54 2320110 RAZH00000000.1 Bac0009408 bacterium 1XD8-76 bacterium 1XD8-76 2320115 RAZE00000000.1 Bac0009409 bacterium 1xD8-6 bacterium 1xD8-6 2320116 RAYK00000000.1 Bac0009410 Aureimonas flava str. M2BS4Y-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas flava 2320271 QYRN00000000.1 Bac0009411 Roseovarius spongiae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius spongiae 2320272 RAPE00000000.1 Bac0009412 Corynebacterium silvaticum Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium silvaticum 2320431 SDQO00000000.2 Bac0009413 Noviherbaspirillum sedimenti Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Noviherbaspirillum Noviherbaspirillum sedimenti 2320865 QYUQ00000000.1 Bac0009414 Siminovitchia acidinfaciens Bacillati Bacillota Bacilli Caryophanales Bacillaceae Siminovitchia Siminovitchia acidinfaciens 2321395 QYTV00000000.2 Bac0009415 Chryseolinea soli Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Chryseolinea Chryseolinea soli 2321403 NZ_CP032382.1 Bac0009416 Anaerotruncus massiliensis Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus massiliensis (ex Liu et al. 2021) 2321404 RCHT00000000.1 Bac0009417 Alcanivorax profundi str. MTEO17 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax profundi 2338368 QYYA00000000.1 Bac0009418 Yersinia hibernica str. CFS1934 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia hibernica 2339259 NZ_CP032488.1 Bac0009419 Mycobacterium pseudokansasii Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium pseudokansasii 2341080 UPHU00000000.1 Bac0009420 Mycobacterium attenuatum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium attenuatum 2341086 UPHP00000000.1 Bac0009421 Phototrophicales bacterium Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicales bacterium 2364211 PGTG00000000.1 Bac0009422 Rhizobium sp. CCGE532 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. CCGE532 2364272 NZ_CP032690.1 Bac0009423 Kalamiella piersonii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea piersonii 2364647 RARB00000000.1 Bac0009424 Citrobacter sp. MH181794 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. MH181794 2364774 RAPH00000000.1 Bac0009425 Butyrivibrio sp. X503 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. X503 2364878 RAIQ00000000.1 Bac0009426 Butyrivibrio sp. XB500-5 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. XB500-5 2364880 RAIS00000000.1 Bac0009427 Proteiniphilum sp. X52 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Proteiniphilum Proteiniphilum sp. X52 2382159 RDSD00000000.1 Bac0009428 Halocella sp. SP3-1 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halocella Halocella sp. SP3-1 2382161 NZ_CP032760.1 Bac0009429 Nocardia yunnanensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia yunnanensis 2382165 NZ_CP032568.1 Bac0009430 Bacteroidetes/Chlorobi group bacterium MS-B_bin-24 Pseudomonadati Bacteroidetes/Chlorobi group bacterium MS-B_bin-24 2382228 RCNO00000000.1 Bac0009431 Kocuria sp. HSID16901 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. HSID16901 2419505 RBLM00000000.1 Bac0009432 Micrococcus sp. HSID17227 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus sp. HSID17227 2419506 RBLN00000000.1 Bac0009433 Microbacterium sp. HSID17254 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. HSID17254 2419509 RBLT00000000.1 Bac0009434 Acinetobacter rongchengensis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter rongchengensis 2419601 RAXT00000000.1 Bac0009435 Acinetobacter tianfuensis Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter tianfuensis 2419603 RAXV00000000.1 Bac0009436 Acinetobacter sp. WCHAc060007 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WCHAc060007 2419605 RAXX00000000.1 Bac0009437 Gryllotalpicola protaetiae Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gryllotalpicola Gryllotalpicola protaetiae 2419771 NZ_CP032625.1 Bac0009438 Trinickia fusca Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia fusca 2419777 RBZV00000000.1 Bac0009439 Serratia sp. FDAARGOS_506 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. FDAARGOS_506 2420306 NZ_CP033831.1 Bac0009440 Caldilineae bacterium Bacillati Chloroflexota Caldilineae Caldilineae bacterium 2420332 RFJM00000000.1 Bac0009441 Cyanobacteria bacterium J007 Bacillati Cyanobacteriota Cyanobacteria bacterium J007 2420339 RFFV00000000.1 Bac0009442 Cyanobacteria bacterium J003 Bacillati Cyanobacteriota Cyanobacteria bacterium J003 2420340 RFFR00000000.1 Bac0009443 Oceanobacillus piezotolerans Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus piezotolerans 2448030 RCHR00000000.1 Bac0009444 Pigmentiphaga humi Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pigmentiphaga Pigmentiphaga humi 2478468 UWPJ00000000.1 Bac0009445 Candidatus Methanodesulfokora washburnensis Thermoproteati Thermoproteota Candidatus Korarchaeia Candidatus Methanodesulfokora Candidatus Methanodesulfokora washburnensis 2478471 RCOS00000000.1 Bac0009446 Spiroplasma endosymbiont of Megaselia nigra Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Megaselia nigra 2478537 RCOO00000000.1 Bac0009447 Flavobacterium sp. 140616W15 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. 140616W15 2478552 NZ_CP033068.1 Bac0009448 Chryseobacterium sp. 3008163 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. 3008163 2478663 NZ_CP033070.1 Bac0009449 Marmoricola mangrovicus Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides mangrovicus 2478913 RDBE00000000.1 Bac0009450 Aeromicrobium phragmitis Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium phragmitis 2478914 RDBF00000000.1 Bac0009451 Eubacterium sp. am_0171 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. am_0171 2478955 RCYI00000000.1 Bac0009452 Streptococcus sp. bf_0095 "Streptococcus sp. bf_0095 is a Gram-positive bacterium characterized by its cocci morphology. This microbe is part of a larger genus known for its spherical shape and tendency to form chains or pairs. As a Gram-positive organism, Streptococcus sp. bf_0095 possesses a thick peptidoglycan layer in its cell wall, which is indicative of its ability to retain the crystal violet stain during the Gram staining process.↵↵The coccal structure of Streptococcus sp. bf_0095 suggests potential roles in various ecological contexts, particularly in environments where cell aggregation may be advantageous. Such arrangements could facilitate nutrient acquisition or provide protection against environmental stressors. While the specific ecological niche of Streptococcus sp. bf_0095 remains to be elucidated, its Gram-positive nature and characteristic shape imply a resilience that may enable it to thrive in diverse habitats, potentially contributing to microbial communities in soil, water, or host-associated environments. ↵↵Further investigation into the metabolic capabilities and environmental interactions of Streptococcus sp. bf_0095 could enhance our understanding of its ecological significance and functional roles within microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. bf_0095 Positive Cocci 2478956 RCYU00000000.1 Bac0009453 Buttiauxella sp. 3AFRM03 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella sp. 3AFRM03 2479367 NZ_CP033076.1 Bac0009454 Dokdonia sinensis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia sinensis 2479847 REFV00000000.1 Bac0009455 Tessaracoccus antarcticus Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus antarcticus 2479848 REFW00000000.1 Bac0009456 Pseudomonas sp. o96-267 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. o96-267 2479853 RHQP00000000.1 Bac0009457 Enterococcus florum str. Gos25-1 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus florum 2480627 BJCC00000000.1 Bac0009458 Alteromonas sp. KUL17 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. KUL17 2480796 SIHL00000000.1 Bac0009459 Alteromonas sp. KUL49 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. KUL49 2480798 SIHN00000000.1 Bac0009460 Pseudoxanthomonas winnipegensis Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas winnipegensis 2480810 SHMC00000000.1 Bac0009461 Aquitalea palustris Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Aquitalea Aquitalea palustris 2480983 RFAR00000000.1 Bac0009462 Chryseotalea sanaruensis Pseudomonadati Bacteroidota Cytophagia Cytophagales Chryseotaleaceae Chryseotalea Chryseotalea sanaruensis 2482724 BHXQ00000000.1 Bac0009463 Parasedimentitalea marina Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Parasedimentitalea Parasedimentitalea marina 2483033 NZ_CP033219.1 Bac0009464 Actinomadura harenae Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura harenae 2483351 RFFG00000000.1 Bac0009465 Pseudogemmobacter humi Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudogemmobacter Pseudogemmobacter humi 2483812 UXAW00000000.1 Bac0009466 Sphingobacterium corticibacterium Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium corticibacterium 2484746 SGIT00000000.1 Bac0009467 Sphingomonas populi Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas populi 2484750 SGIS00000000.1 Bac0009468 Curtobacterium sp. PhB78 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB78 2485102 RKIA00000000.1 Bac0009469 Novosphingobium sp. PhB57 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. PhB57 2485107 SMBO00000000.1 Bac0009470 Curtobacterium sp. JUb34 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. JUb34 2485109 RJVH00000000.1 Bac0009471 Sphingobacterium sp. JUb78 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. JUb78 2485111 SLYX00000000.1 Bac0009472 Sphingomonas sp. JUb134 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. JUb134 2485112 SLYP00000000.2 Bac0009473 Neorhizobium sp. JUb45 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium sp. JUb45 2485113 SLYW00000000.1 Bac0009474 Klebsiella sp. BIGb0138 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. BIGb0138 2485115 SMCV00000000.1 Bac0009475 Enterobacter sp. BIGb0383 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. BIGb0383 2485118 RJKQ00000000.1 Bac0009476 Pectobacterium polonicum str. DPMP315 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium polonicum 2485124 RJTN00000000.1 Bac0009477 Kocuria soli Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria soli 2485125 RKMF00000000.1 Bac0009478 Rahnella sp. JUb53 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rahnella Rahnella sp. JUb53 2485128 SLYT00000000.1 Bac0009479 Acinetobacter sp. BIGb0102 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. BIGb0102 2485131 RKQE00000000.1 Bac0009480 Enterobacter sp. BIGb0359 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. BIGb0359 2485133 RKHS00000000.1 Bac0009481 Marinobacter sp. 3-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. 3-2 2485141 RJUQ00000000.1 Bac0009482 Pseudomonas sp. 460 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 460 2485142 SMCH00000000.1 Bac0009483 Streptomyces sp. KS 21 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. KS 21 2485150 SOCC00000000.1 Bac0009484 Streptomyces sp. TLI_185 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TLI_185 2485151 RKRB00000000.1 Bac0009485 Streptomyces sp. CEV 2-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CEV 2-1 2485153 RJUV00000000.1 Bac0009486 Frigoribacterium sp. PhB107 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. PhB107 2485172 RJKU00000000.1 Bac0009487 Curtobacterium sp. PhB134 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB134 2485180 SLUX00000000.1 Bac0009488 Curtobacterium sp. PhB136 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB136 2485181 SMGH00000000.1 Bac0009489 Curtobacterium sp. PhB137 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB137 2485182 RKQO00000000.1 Bac0009490 Curtobacterium sp. PhB142 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB142 2485185 SLUT00000000.1 Bac0009491 Curtobacterium sp. PhB146 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB146 2485187 SMBN00000000.1 Bac0009492 Curtobacterium sp. PhB171 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB171 2485195 RJLB00000000.1 Bac0009493 Rathayibacter sp. PhB179 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. PhB179 2485197 SLVD00000000.1 Bac0009494 Curtobacterium sp. PhB25 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB25 2485205 SODR00000000.1 Bac0009495 Curtobacterium sp. PhB42 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB42 2485206 SODK00000000.1 Bac0009496 Methanohalophilus sp. RSK Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus sp. RSK 2485783 RDSK00000000.1 Bac0009497 Hydrogeniiclostridium mannosilyticum "Hydrogeniiclostridium mannosilyticum is an obligate anaerobic bacterium whose Gram stain characteristics remain uncharacterized. As an anaerobe, H. mannosilyticum thrives in environments devoid of oxygen, which is essential for its metabolic processes. While specific morphological and physiological traits have not been delineated in the available data, its classification within the genus Hydrogeniiclostridium suggests that it may share metabolic pathways with other members of this group, particularly in the fermentation of carbohydrates.↵↵The obligate anaerobic nature of H. mannosilyticum implies that it is likely adapted to environments such as anaerobic digesters, the gastrointestinal tracts of certain animals, or other anoxic habitats where it could play a role in the decomposition of organic matter. Such metabolic adaptations may allow it to contribute to the cycling of nutrients in its ecosystem, potentially enhancing the breakdown of polysaccharides like mannose.↵↵Further investigation into the metabolic capabilities of Hydrogeniiclostridium mannosilyticum could reveal its potential role in biotechnological applications or its interactions within microbial communities. Understanding its physiological traits could provide insights into the ecological functions of similar anaerobic microbes, particularly in their contributions to organic matter degradation and nutrient recycling in anaerobic environments." Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Hydrogeniiclostridium Hydrogeniiclostridium mannosilyticum Uncharacterized Obligate anaerobe 2485925 QLYR00000000.1 Bac0009498 Oscillospiraceae bacterium "Oscillospiraceae bacterium is a filamentous, nonsporulating microbe belonging to the family Oscillospiraceae, primarily found within the intestinal microflora of animals. This bacterium plays a crucial role in the gastrointestinal ecosystem, contributing to the complex microbial community essential for host health. Members of the Oscillospiraceae family are known for their involvement in the fermentation of dietary fibers, thus aiding in the breakdown of complex carbohydrates and promoting gut health. Oscillospiraceae bacterium's filamentous structure allows for a unique interaction with other microbial species in the gut environment, facilitating nutrient exchange and contributing to the overall stability of the microbiome. This bacterium is believed to produce short-chain fatty acids (SCFAs), which are vital for maintaining gut homeostasis and regulating inflammatory responses.Moreover, the presence of Oscillospiraceae bacterium may influence the host's immune system, as its metabolites can modulate immune responses, potentially reducing the risk of gastrointestinal disorders. The symbiotic relationship between this bacterium and its host underscores the importance of a diverse gut microbiota for optimal health. As research continues to unravel the complexities of gut microbiomes, Oscillospiraceae bacterium exemplifies how specific microbes can impact not only digestion but also systemic health, highlighting the intricate balance within intestinal ecosystems. Understanding these relationships may pave the way for novel therapeutic strategies aimed at restoring gut health by modifying the microbial community composition." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillospiraceae bacterium Uncharacterized Obligate anaerobe 2485925 QAMV00000000.1 Bac0009499 Muribaculaceae bacterium Isolate-036 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-036 (Harlan) 2486460 RIAY00000000.1 Bac0009500 Muribaculaceae bacterium Isolate-043 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-043 (Harlan) 2486463 RIBB00000000.1 Bac0009501 Muribaculaceae bacterium Isolate-039 (Harlan) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-039 (Harlan) 2486466 RIBE00000000.1 Bac0009502 Muribaculaceae bacterium Isolate-110 (HZI) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-110 (HZI) 2486473 RIBL00000000.1 Bac0009503 Chryseobacterium sp. G0186 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. G0186 2487064 NZ_CP033918.1 Bac0009504 Chryseobacterium sp. G0201 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. G0201 2487065 NZ_CP033917.1 Bac0009505 Epilithonimonas vandammei Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas vandammei 2487072 NZ_CP034160.1 Bac0009506 Kaistella daneshvariae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella daneshvariae 2487074 RJUG00000000.1 Bac0009507 Intestinibaculum porci Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Intestinibaculum Intestinibaculum porci 2487118 NZ_AP019309.1 Bac0009508 Phytobacter sp. MRY16-398 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Phytobacter sp. MRY16-398 aerobic 2487150 NZ_AP018757.1 Bac0009509 Pseudomonas sp. SSM44 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SSM44 2487347 RKKV00000000.1 Bac0009510 Gordonia oryzae Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia oryzae 2487349 RKMH00000000.1 Bac0009511 Aerococcus agrisoli Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus agrisoli 2487350 RKMG00000000.1 Bac0009512 Rhodococcus xishaensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus xishaensis 2487364 RKLO00000000.1 Bac0009513 Streptomyces sp. WAC06614 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC06614 2487416 RPRY00000000.1 Bac0009514 Streptomyces sp. WAC05292 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC05292 2487418 RPSE00000000.1 Bac0009515 Streptomyces sp. WAC05374 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC05374 2487420 RQJD00000000.1 Bac0009516 Streptomyces sp. WAC08241 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC08241 2487421 RPRZ00000000.1 Bac0009517 Phytopseudomonas dryadis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Phytopseudomonas Phytopseudomonas dryadis 2487520 QJUL00000000.1 Bac0009518 Micromonospora sp. HM5-17 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. HM5-17 2487710 RJWA00000000.1 Bac0009519 Cyclobacteriaceae bacterium YHN15 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cyclobacteriaceae bacterium YHN15 2487897 RKQB00000000.1 Bac0009520 Brucellaceae bacterium VT-16-1752 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucellaceae bacterium VT-16-1752 2487907 RQUW00000000.1 Bac0009521 Paenibacillus sp. M-152 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. M-152 2487928 NZ_CP034141.1 Bac0009522 Pseudorhodobacter sp. E13 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudorhodobacter Pseudorhodobacter sp. E13 2487931 RPEN00000000.1 Bac0009523 Klebsiella sp. FDAARGOS_511 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. FDAARGOS_511 2488567 NZ_CP033823.1 Bac0009524 Chitinophaga lutea Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga lutea 2488634 RPDH00000000.1 Bac0009525 Falsigemmobacter faecalis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Falsigemmobacter Falsigemmobacter faecalis 2488730 RRAZ00000000.1 Bac0009526 Corynebacterium endometrii str. LMM-1653 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium endometrii 2488819 NZ_CP039247.1 Bac0009527 Aurantiacibacter spongiae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter spongiae 2488860 RPFZ00000000.1 Bac0009528 Microbacterium sp. RG1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. RG1 2489212 NZ_CP034121.1 Bac0009529 Deinococcus psychrotolerans str. S14-83T Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus psychrotolerans 2489213 NZ_CP034189.1 Bac0009530 Muribaculaceae bacterium Isolate-004 (NCI) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-004 (NCI) 2489216 SCEH00000000.1 Bac0009531 Muribaculaceae bacterium Isolate-007 (NCI) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-007 (NCI) 2489217 SCEI00000000.1 Bac0009532 Pseudoalteromonas sp. Xi13 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. Xi13 2490635 NZ_CP034440.1 Bac0009533 Ensifer sp. MPMI2T Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. MPMI2T 2490847 SRXN00000000.1 Bac0009534 Streptomyces sp. RP5T Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. RP5T 2490848 RSAJ00000000.1 Bac0009535 Rhodococcus sp. NJ-530 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. NJ-530 2490853 NZ_CP034156.1 Bac0009536 Devosia equisanguinis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia equisanguinis 2490941 UZWD00000000.1 Bac0009537 Novosphingobium sp. LASN5T Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. LASN5T 2491021 RQSI00000000.1 Bac0009538 Bacillus sp. C1-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. C1-1 2491024 RQRY00000000.1 Bac0009539 Leptotrichia sp. OH3620_COT-345 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. OH3620_COT-345 2491048 RQYW00000000.1 Bac0009540 Comamonadaceae bacterium OH3737_COT-264 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium OH3737_COT-264 2491055 RQYX00000000.1 Bac0009541 Erysipelotrichaceae bacterium OH741_COT-311 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium OH741_COT-311 2491058 RQZE00000000.1 Bac0009542 Kosakonia sp. CCTCC M2018092 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia sp. CCTCC M2018092 2492396 NZ_CP034225.1 Bac0009543 Caulobacter sp. 602-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. 602-1 2492472 RRYI00000000.1 Bac0009544 Bacillus yapensis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus yapensis 2492960 SUND00000000.1 Bac0009545 Glycomyces terrestris Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces terrestris 2493553 RSEB00000000.1 Bac0009546 Mesorhizobium sp. M4B.F.Ca.ET.058.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.058.02.1.1 2493675 NZ_CP034450.1 Bac0009547 Mesorhizobium sp. M7D.F.Ca.US.005.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7D.F.Ca.US.005.01.1.1 "Washington, USA" 2493678 NZ_CP034453.1 Bac0009548 Streptomyces antnestii Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces antnestii 2494256 RZYA00000000.1 Bac0009549 Bacillus wiedmannii bv. thuringiensis str. FCC41 "Bacillus wiedmannii bv. thuringiensis str. FCC41 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵Bacillus wiedmannii bv. thuringiensis str. FCC41 is part of a diverse genus known for its ability to inhabit multiple environments, which may include soil, plant surfaces, and various niches within terrestrial ecosystems. The chain arrangement observed in this strain may facilitate its survival and growth in specific habitats by enhancing nutrient acquisition and promoting cellular communication.↵↵Though the specific ecological roles and interactions of Bacillus wiedmannii bv. thuringiensis str. FCC41 are not fully elucidated, its adaptability to various habitats suggests a potential utility in biocontrol or bioremediation applications. This adaptability, combined with the strain's aerobic nature, may allow it to play a significant role in nutrient cycling and the maintenance of ecological balance within its environments. Further research would be necessary to explore these potential applications and to better understand the ecological implications of its presence in diverse habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 2494319 CP024686.1 Bac0009550 Flammeovirga pectinis Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga pectinis 2494373 NZ_CP034562.1 Bac0009551 Tabrizicola piscis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tabrizicola Tabrizicola piscis 2494374 NZ_CP034329.1 Bac0009552 Mangrovimonas spongiae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mangrovimonas Mangrovimonas spongiae 2494697 RWBG00000000.1 Bac0009553 Massilia atriviolacea Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia atriviolacea 2495579 RXLQ00000000.1 Bac0009554 Sphingomonas sp. TF3 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. TF3 2495580 RWKS00000000.1 Bac0009555 Aquibium carbonis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aquibium Aquibium carbonis 2495581 RWKW00000000.1 Bac0009556 Paenibacillus albus Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus albus 2495582 NZ_CP034437.1 Bac0009557 Variovorax sp. DXTD-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. DXTD-1 2495592 RWKH00000000.1 Bac0009558 Variovorax sp. MHTC-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. MHTC-1 2495593 RWKI00000000.1 Bac0009559 Variovorax beijingensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax beijingensis 2496117 RQXU00000000.1 Bac0009560 Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) 2496632 JSUN00000000.1 Bac0009561 Epsilonproteobacteria bacterium (ex Lamellibrachia satsuma) Pseudomonadati Campylobacterota Epsilonproteobacteria bacterium (ex Lamellibrachia satsuma) 2496635 JQIX00000000.1 Bac0009562 Mesorhizobium sp. M4B.F.Ca.ET.017.02.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.017.02.2.1 2496649 RZOF00000000.1 Bac0009563 Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1 2496653 RZOJ00000000.1 Bac0009564 Mesorhizobium sp. M7A.F.Ca.ET.027.03.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.ET.027.03.2.1 2496656 RZOM00000000.1 Bac0009565 Mesorhizobium sp. M00.F.Ca.ET.038.03.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M00.F.Ca.ET.038.03.1.1 2496659 RZOP00000000.1 Bac0009566 Mesorhizobium sp. M2A.F.Ca.ET.046.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2A.F.Ca.ET.046.02.1.1 2496660 RZOQ00000000.1 Bac0009567 Mesorhizobium sp. M1D.F.Ca.ET.231.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1D.F.Ca.ET.231.01.1.1 2496669 RZOZ00000000.2 Bac0009568 Mesorhizobium sp. M7A.F.Ca.AU.002.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.AU.002.02.1.1 2496671 RZPB00000000.1 Bac0009569 Mesorhizobium sp. M7A.F.Ca.AU.001.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.AU.001.01.1.1 2496675 RZPF00000000.1 Bac0009570 Mesorhizobium sp. M7A.F.Ca.CA.002.15.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.15.2.1 2496678 RZPI00000000.1 Bac0009571 Mesorhizobium sp. M7A.F.Ca.CA.002.03.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.03.2.1 2496680 RZPK00000000.1 Bac0009572 Mesorhizobium sp. M7A.F.Ca.CA.001.06.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.06.1.1 2496682 RZPM00000000.1 Bac0009573 Mesorhizobium sp. M7A.F.Ca.CA.002.06.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.06.1.1 2496705 RZQJ00000000.1 Bac0009574 Mesorhizobium sp. M7A.F.Ca.CA.001.14.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.14.1.1 2496706 RZQK00000000.1 Bac0009575 Mesorhizobium sp. M7A.F.Ca.US.003.02.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.003.02.2.1 2496709 RZQN00000000.1 Bac0009576 Mesorhizobium sp. M7A.F.Ca.US.007.01.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.007.01.2.1 2496711 RZQP00000000.1 Bac0009577 Mesorhizobium sp. M7A.F.Ca.CA.001.15.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.15.1.1 2496713 RZQR00000000.1 Bac0009578 Mesorhizobium sp. M7A.F.Ca.CA.002.15.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.15.1.1 2496717 RZQV00000000.1 Bac0009579 Mesorhizobium sp. M7A.F.Ca.CA.001.09.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.09.1.1 2496718 RZQW00000000.1 Bac0009580 Mesorhizobium sp. M7A.F.Ca.CA.002.07.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.07.1.1 2496723 RZRB00000000.1 Bac0009581 Mesorhizobium sp. M7A.F.Ca.CA.001.13.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.13.2.1 2496729 RZRH00000000.1 Bac0009582 Mesorhizobium sp. M7A.F.Ca.CA.002.11.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.11.2.1 2496734 RZRM00000000.1 Bac0009583 Mesorhizobium sp. M7A.F.Ca.CA.002.12.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.12.1.1 2496735 RZRN00000000.1 Bac0009584 Mesorhizobium sp. M7A.F.Ca.US.005.03.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.005.03.1.1 2496736 RZRO00000000.1 Bac0009585 Mesorhizobium sp. M7D.F.Ca.US.004.01.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7D.F.Ca.US.004.01.2.1 2496738 RZRQ00000000.1 Bac0009586 Mesorhizobium sp. M7A.F.Ca.CA.002.14.1.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.14.1.2 2496740 RZRS00000000.1 Bac0009587 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 2496742 RZRU00000000.1 Bac0009588 Mesorhizobium sp. M2A.F.Ca.ET.067.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2A.F.Ca.ET.067.02.1.1 2496749 RZSB00000000.1 Bac0009589 Mesorhizobium sp. M4B.F.Ca.ET.013.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.013.02.1.1 2496755 RZSH00000000.1 Bac0009590 Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 2496756 RZSI00000000.1 Bac0009591 Mesorhizobium sp. M1A.F.Ca.IN.022.05.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1A.F.Ca.IN.022.05.2.1 2496760 RZSM00000000.1 Bac0009592 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 2496768 RZSU00000000.1 Bac0009593 Mesorhizobium sp. M7A.F.Ca.MR.245.00.0.0 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.MR.245.00.0.0 2496778 RZTE00000000.1 Bac0009594 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 2496779 RZTF00000000.1 Bac0009595 Mesorhizobium sp. Primo-A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Primo-A 2496780 RZTG00000000.1 Bac0009596 Mesorhizobium sp. M2C.T.Ca.TU.009.01.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2C.T.Ca.TU.009.01.2.1 2496787 RZTN00000000.1 Bac0009597 Mesorhizobium sp. M2C.T.Ca.TU.002.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2C.T.Ca.TU.002.02.1.1 2496788 RZTO00000000.1 Bac0009598 Maribacter sp. MJ134 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter sp. MJ134 2496865 NZ_CP034570.1 Bac0009599 Halorubrum sp. BOL3-1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. BOL3-1 2497325 NZ_CP034690.1 Bac0009600 Enterobacter quasiroggenkampii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter quasiroggenkampii 2497436 RXSJ00000000.1 Bac0009601 Pantoea sp. YU22 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. YU22 2497684 RYDU00000000.1 Bac0009602 Colwellia sp. Arc7-635 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. Arc7-635 2497879 NZ_CP034660.1 Bac0009603 Candidatus Ornithobacterium hominis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Ornithobacterium Candidatus Ornithobacterium hominis 2497989 UNSC00000000.1 Bac0009604 Muribaculum caecicola "Muribaculum caecicola is a Gram-negative, nonsporulating bacterium classified within the intestinal microflora of animals. This microbe exhibits a chemoheterotrophic metabolism, deriving energy from organic compounds present in its habitat. As an anaerobic organism, M. caecicola thrives in environments devoid of oxygen, which is characteristic of the gut ecosystem where it resides.↵↵Initial studies suggest that M. caecicola plays a role in the complex interactions of the gut microbiota, contributing to the overall metabolic processes occurring within the intestinal lumen. Its presence in the intestinal microflora indicates potential involvement in the fermentation of dietary components, possibly influencing nutrient absorption and host health.↵↵Understanding the specific role of M. caecicola within the gut microbiome could provide insights into its interactions with other microbial species and its contribution to gut homeostasis. Further research may elucidate its functional significance and adaptability to the anaerobic conditions of the intestinal environment, highlighting the intricate balance of microbial communities in animal health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculum Muribaculum caecicola Negative No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Nonsporulating 2498093 SSTG00000000.1 Bac0009605 Legionella sp. km535 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella sp. km535 2498107 RZGU00000000.1 Bac0009606 Streptomonospora litoralis Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Streptomonospora Streptomonospora litoralis 2498135 NZ_CP036456.1 Bac0009607 Pseudomonas sp. PAMC 29040 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PAMC 29040 2498450 RZAA00000000.1 Bac0009608 Pseudomonas sp. MPC6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MPC6 2498848 NZ_CP034782.1 Bac0009609 Labedella phragmitis str. 11W25H-1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Labedella Labedella phragmitis 2498849 RZNB00000000.1 Bac0009610 Vreelandella populi Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella populi 2498858 RZHD00000000.1 Bac0009611 Bacillus sp. VKPM B-3276 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. VKPM B-3276 2499077 RZHM00000000.1 Bac0009612 Agrobacterium sp. CNPSo 2736 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. CNPSo 2736 2499627 RZTX00000000.1 Bac0009613 Rubrivivax albus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Rubrivivax Rubrivivax albus 2499835 SACT00000000.1 Bac0009614 Inhella crocodyli Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Inhella Inhella crocodyli 2499851 SACM00000000.1 Bac0009615 Enterobacter sp. N18-03635 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. N18-03635 2500132 NZ_CP034768.1 Bac0009616 Hwanghaeella grinnelliae str. Gri0909 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Aestuariispiraceae Hwanghaeella Hwanghaeella grinnelliae 2500179 SADE00000000.1 Bac0009617 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 2500518 SADH00000000.2 Bac0009618 Mesorhizobium sp. M2E.F.Ca.ET.166.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2E.F.Ca.ET.166.01.1.1 2500523 SADM00000000.2 Bac0009619 Mesorhizobium sp. M00.F.Ca.ET.186.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M00.F.Ca.ET.186.01.1.1 2500525 SADO00000000.2 Bac0009620 Mesorhizobium sp. M00.F.Ca.ET.216.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M00.F.Ca.ET.216.01.1.1 2500528 SADR00000000.2 Bac0009621 Paracoccus sp. Arc7-R13 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sp. Arc7-R13 2500532 NZ_CP034814.1 Bac0009622 Acetobacter oryzoeni Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter oryzoeni 2500548 NZ_CP042810.1 Bac0009623 Paenirhodobacter huangdaonensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paenirhodobacter Paenirhodobacter huangdaonensis 2501515 SAVA00000000.1 Bac0009624 Flaviaestuariibacter flavus Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flaviaestuariibacter Flaviaestuariibacter flavus 2502780 SJZI00000000.1 Bac0009625 Hymenobacter jejuensis Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter jejuensis 2502781 NZ_CP040896.1 Bac0009626 Nocardioides jejuensis Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides jejuensis 2502782 SJZJ00000000.1 Bac0009627 Spirosoma sordidisoli Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma sordidisoli 2502893 SBLB00000000.1 Bac0009628 Neorhizobium lilium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium lilium 2503024 SBIP00000000.1 Bac0009629 Pseudomonas viciae Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viciae 2505979 NZ_CP035089.1 Bac0009630 Sphingobium fluviale Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium fluviale 2506423 SBKP00000000.1 Bac0009631 Flavobacterium piscinae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium piscinae 2506424 SBKQ00000000.1 Bac0009632 Streptomyces sp. S6 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. S6 2506427 CP040654.1 Bac0009633 Macrococcus sp. DPC7161 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus sp. DPC7161 2507060 SDSC00000000.1 Bac0009634 Methanosarcina sp. MSH10X1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. MSH10X1 2507075 SCHL00000000.1 Bac0009635 Aminipila luticellarii Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Aminipila Aminipila luticellarii 2507160 NZ_CP035281.1 Bac0009636 Caproiciproducens sp. NJN-50 Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Caproiciproducens Caproiciproducens sp. NJN-50 2507162 NZ_CP035283.1 Bac0009637 Cohnella abietis Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella abietis 2507935 NZ_AP019400.1 Bac0009638 Leisingera sp. NJS201 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera sp. NJS201 2508306 NZ_CP038239.1 Bac0009639 Lacibacter luteus Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Lacibacter Lacibacter luteus 2508719 SDHW00000000.1 Bac0009640 Filimonas effusa Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Filimonas Filimonas effusa 2508721 SDHZ00000000.1 Bac0009641 Chlorobaculum sp. 24CR Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp. 24CR anaerobic 2508878 SDGU00000000.1 Bac0009642 Haloarcula mannanilytica Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula mannanilytica 2509225 BIXZ00000000.1 Bac0009643 Microbacterium protaetiae Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium protaetiae 2509458 NZ_CP035494.1 Bac0009644 Ktedonosporobacter rubrisoli Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonosporobacteraceae Ktedonosporobacter Ktedonosporobacter rubrisoli 2509675 NZ_CP035758.1 Bac0009645 Ciceribacter ferrooxidans Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ciceribacter Ciceribacter ferrooxidans 2509717 SDVB00000000.1 Bac0009646 Campylobacter taeniopygiae Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter taeniopygiae 2510188 NXLY00000000.1 Bac0009647 Campylobacter estrildidarum Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter estrildidarum 2510189 NXLZ00000000.1 Bac0009648 Campylobacter aviculae Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter aviculae 2510190 NXMA00000000.1 Bac0009649 Tropicimonas sp. IMCC6043 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tropicimonas Tropicimonas sp. IMCC6043 2510645 SELO00000000.1 Bac0009650 Loktanella sp. IMCC34160 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Loktanella Loktanella sp. IMCC34160 2510646 SELP00000000.1 Bac0009651 Flavobacteriaceae bacterium 144Ye Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium 144Ye 2510794 SEHM00000000.1 Bac0009652 Pseudolysobacter antarcticus Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Pseudolysobacter Pseudolysobacter antarcticus 2511995 NZ_CP035704.1 Bac0009653 Caulobacter sp. BK020 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. BK020 2512117 SLZL00000000.1 Bac0009654 Microbacterium sp. BK668 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. BK668 2512118 SNWG00000000.1 Bac0009655 Sphingomonas sp. BK036 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. BK036 2512122 SGXR00000000.1 Bac0009656 Rhizobium sp. BK068 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. BK068 2512130 SLVK00000000.1 Bac0009657 Sphingomonas sp. BK235 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. BK235 2512131 SLXN00000000.1 Bac0009658 Streptomyces sp. BK208 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. BK208 2512150 SOAV00000000.1 Bac0009659 Bacillus sp. BK006 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. BK006 2512183 SLVS00000000.1 Bac0009660 Kribbella sp. VKM Ac-2500 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella sp. VKM Ac-2500 2512214 SLVW00000000.1 Bac0009661 Kribbella caucasensis Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella caucasensis 2512215 SNWQ00000000.1 Bac0009662 Kribbella antiqua Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella antiqua 2512217 SLWR00000000.1 Bac0009663 Kribbella sp. VKM Ac-2568 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella sp. VKM Ac-2568 2512219 SLVF00000000.1 Bac0009664 Kribbella kalugense Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella kalugense 2512221 SODF00000000.1 Bac0009665 Aquirufa nivalisilvae Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Aquirufa Aquirufa nivalisilvae 2516557 SEWX00000000.1 Bac0009666 Propionibacterium sp. NM47_B9-13 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. NM47_B9-13 2516957 SRYP00000000.1 Bac0009667 Lysinibacillus sp. OL1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. OL1 2517243 SJDS00000000.1 Bac0009668 Flagellimonas allohymeniacidonis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas allohymeniacidonis 2517819 SGIU00000000.1 Bac0009669 Halorubrum sp. GN11GM_10-3_MGM Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. GN11GM_10-3_MGM 2518111 SGUD00000000.1 Bac0009670 Halorubrum sp. ASP1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. ASP1 2518114 SGUA00000000.1 Bac0009671 Halorubrum sp. SD690R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. SD690R 2518117 SGTV00000000.1 Bac0009672 Halorubrum sp. SS5 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. SS5 2518118 SGXW00000000.1 Bac0009673 Flavobacterium sangjuense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sangjuense 2518177 NZ_CP038810.1 Bac0009674 Nocardioides seonyuensis Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides seonyuensis 2518371 NZ_CP038436.1 Bac0009675 Acinetobacter sp. WCHAc060033 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WCHAc060033 2518624 SGSW00000000.1 Bac0009676 Duncaniella dubosii "Duncaniella dubosii is a Gram-negative bacillus that resides primarily in the intestinal microflora of animals. This anaerobic microorganism is classified as a chemoheterotroph, relying on organic compounds from its host for energy and growth, which positions it as a crucial player in the complex microbiome of the gut. While the specific temperature range and optimal growth conditions for Duncaniella dubosii have not been fully characterized, its adaptation to the anaerobic environment of the intestines underscores its role in digestive processes. Duncaniella dubosii contributes significantly to the breakdown of complex carbohydrates and proteins, facilitating nutrient absorption for the host. It may also play an essential role in maintaining gut health by outcompeting pathogenic bacteria, thus contributing to a balanced microbial ecosystem. The presence of such anaerobic bacteria highlights the intricate relationships within the intestinal environment, where cooperation among various microbial populations is key to overall health. Moreover, Duncaniella dubosii exemplifies the symbiotic relationships that exist in animal intestines, emphasizing the importance of gut microbiota diversity. By interacting with its host and other microorganisms, this bacillus not only aids in digestion but also influences the host's immune responses and metabolic pathways. Understanding species like Duncaniella dubosii can shed light on the complexities of microbial interactions and their impact on host health, potentially leading to advancements in probiotic and therapeutic applications aimed at improving gut health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Duncaniella Duncaniella dubosii Negative Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora 2518971 NZ_CP039396.1 Bac0009677 Shinella sp. JR1-6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Shinella Shinella sp. JR1-6 2527671 SHMI00000000.1 Bac0009678 Roseicella aquatilis Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseicella Roseicella aquatilis 2527868 SKBM00000000.1 Bac0009679 Mediterraneibacter sp. gm002 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter sp. gm002 2527876 SIHS00000000.1 Bac0009680 Verrucosispora sp. SN26_14.1 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Verrucosispora sp. SN26_14.1 2527879 SISL00000000.1 Bac0009681 Hyunsoonleella flava Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Hyunsoonleella Hyunsoonleella flava 2527939 SIRT00000000.1 Bac0009682 Erythrobacteraceae bacterium CFH 75059 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacteraceae bacterium CFH 75059 2528174 SJSR00000000.1 Bac0009683 Bacteroides sp. A1C1 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. A1C1 2528203 NZ_CP036491.1 Bac0009684 Pseudomonas sp. BGI-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. BGI-2 2528211 SISB00000000.1 Bac0009685 Aestuariirhabdus litorea str. GTF-13 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Aestuariirhabdaceae Aestuariirhabdus Aestuariirhabdus litorea 2528527 QWEZ00000000.1 Bac0009686 Zhaonella formicivorans Bacillati Bacillota Clostridia Neomoorellales Zhaonellaceae Zhaonella Zhaonella formicivorans 2528593 NZ_CP085524.1 Bac0009687 Puteibacter caeruleilacunae Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Puteibacter Puteibacter caeruleilacunae 2528631 SJCO00000000.1 Bac0009688 Marinobacter halodurans Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter halodurans 2528979 SJDL00000000.1 Bac0009689 Pedobacter changchengzhani Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter changchengzhani 2529274 SJCY00000000.1 Bac0009690 Arcanobacterium bovis Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium bovis 2529275 SJDT00000000.1 Bac0009691 Gramella sp. KN1008 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Gramella sp. KN1008 2529298 SJDV00000000.1 Bac0009692 Enterobacter wuhouensis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter wuhouensis 2529381 SJOO00000000.1 Bac0009693 Enterobacter quasihormaechei Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter quasihormaechei 2529382 SJON00000000.1 Bac0009694 Acinetobacter sp. ANC 3781 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 3781 2529835 SJOH00000000.1 Bac0009695 Acinetobacter sp. ANC 4216 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4216 2529840 SJOC00000000.1 Bac0009696 Acinetobacter sp. ANC 4779 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4779 2529848 SJNU00000000.1 Bac0009697 Acinetobacter sp. ANC 5045 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 5045 2529851 SJNS00000000.1 Bac0009698 Tenacibaculum sp. M341 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum sp. M341 2530339 SJXJ00000000.1 Bac0009699 Actinomadura sp. 6K520 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. 6K520 2530364 SMLC00000000.1 Bac0009700 Actinomadura sp. 7K507 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. 7K507 2530365 SMKK00000000.1 Bac0009701 Actinomadura sp. 7K534 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. 7K534 2530366 SMKB00000000.1 Bac0009702 Actinomadura sp. KC06 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. KC06 2530369 SMKT00000000.1 Bac0009703 Actinomadura sp. KC216 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp. KC216 2530370 SMJX00000000.1 Bac0009704 Jiangella aurantiaca Bacillati Actinomycetota Actinomycetes Jiangellales Jiangellaceae Jiangella Jiangella aurantiaca 2530373 SMLB00000000.1 Bac0009705 Micromonospora sp. KC207 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. KC207 2530377 SMKJ00000000.1 Bac0009706 Micromonospora sp. KC606 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. KC606 2530379 SMKN00000000.1 Bac0009707 Micromonospora sp. KC721 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. KC721 2530380 SMJY00000000.1 Bac0009708 Micromonospora sp. KC723 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. KC723 2530381 SMKD00000000.1 Bac0009709 Saccharopolyspora aridisoli Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora aridisoli 2530385 SMKV00000000.1 Bac0009710 Saccharopolyspora karakumensis Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora karakumensis 2530386 SMLA00000000.1 Bac0009711 Saccharopolyspora elongata Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora elongata 2530387 SMKW00000000.1 Bac0009712 Streptomyces sp. 8K308 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 8K308 2530388 SMKC00000000.1 Bac0009713 Muribaculum gordoncarteri "Muribaculum gordoncarteri is a nonsporulating, cellulolytic microbe recognized for its role as a chemoheterotroph, deriving energy from organic compounds in various environments. This bacterium has been observed in multiple habitats, highlighting its adaptability and ecological significance. Its optimal growth temperature is found to be around 5.33 °C, which suggests that it may thrive in cooler environments, possibly including anaerobic niches within soil or sediment layers where organic matter decomposition occurs. Though specific details regarding its Gram stain, shape, and cell arrangement remain unknown, Muribaculum gordoncarteri contributes to the microbial diversity that facilitates the breakdown of cellulose. This process is essential in nutrient cycling, particularly in ecosystems rich in plant material. By degrading cellulose, Muribaculum gordoncarteri not only helps recycle carbon but also supports the growth of other microorganisms and contributes to soil health. An intriguing ecological insight regarding Muribaculum gordoncarteri is its potential role in the gut microbiota of various mammals, including rodents. This association may influence host digestion and metabolism, shedding light on the intricate relationships between gut microbes and their hosts. The presence of such cellulolytic bacteria is crucial for optimizing energy extraction from plant-based diets, which can profoundly impact host health and fitness." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculum Muribaculum gordoncarteri No 1 5 Chemoheterotroph Multiple Nonsporulating 2530390 NZ_CP039393.1 Bac0009714 Pedobacter psychroterrae Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter psychroterrae 2530453 SJSL00000000.1 Bac0009715 Pedobacter hiemivivus Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter hiemivivus 2530454 SJSM00000000.1 Bac0009716 Pedobacter psychrodurus Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter psychrodurus 2530456 SJSO00000000.1 Bac0009717 Dyadobacter psychrotolerans Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter psychrotolerans 2541721 SMFL00000000.1 Bac0009718 Flavobacterium rhamnosiphilum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium rhamnosiphilum 2541724 SMLG00000000.1 Bac0009719 Carideicomes alvinocaridis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Carideicomes Carideicomes alvinocaridis 2541728 SRJI00000000.2 Bac0009720 Flavobacterium caseinilyticum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium caseinilyticum 2541732 SMFM00000000.1 Bac0009721 Flavobacterium sandaracinum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sandaracinum 2541733 SMFN00000000.1 Bac0009722 Streptomyces sp. KM273126 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. KM273126 2545247 SJXB00000000.2 Bac0009723 Aeromicrobium sp. IC_218 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp. IC_218 2545468 SJXM00000000.1 Bac0009724 Halomonas sp. GDM18 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. GDM18 2545469 SJZC00000000.1 Bac0009725 Deinococcus sp. S9 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. S9 2545754 SKCF00000000.1 Bac0009726 Halomonas marinisediminis Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas marinisediminis 2546095 SLTR00000000.1 Bac0009727 Alteromonadaceae bacterium M269 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonadaceae bacterium M269 2546219 SMNZ00000000.1 Bac0009728 Arenimonas terrae Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Arenimonas Arenimonas terrae 2546226 SMDR00000000.1 Bac0009729 Antarcticimicrobium sediminis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Antarcticimicrobium Antarcticimicrobium sediminis 2546227 SMFP00000000.1 Bac0009730 Thermaerobacter sp. FW80 Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Thermaerobacter Thermaerobacter sp. FW80 2546351 NZ_CP037895.1 Bac0009731 Paenibacillus piri Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus piri 2547395 SMRT00000000.1 Bac0009732 Paraburkholderia pallida Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia pallida 2547399 NZ_CP038150.1 Bac0009733 Palleronia sediminis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Palleronia Palleronia sediminis 2547833 SNAA00000000.1 Bac0009734 Arthrobacter crusticola Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter crusticola 2547960 SMTK00000000.1 Bac0009735 Streptomyces aquilus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces aquilus 2548456 NZ_CP034463.1 Bac0009736 Enterobacter sp. MF024 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. MF024 2555644 VCBB00000000.1 Bac0009737 Sphingobacterium sp. CZ-2 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. CZ-2 2557994 NZ_CP038159.1 Bac0009738 Pseudomonas sp. S150 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. S150 2559074 NZ_CP038207.1 Bac0009739 Paracoccus liaowanqingii Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus liaowanqingii 2560053 NZ_CP040765.1 Bac0009740 Sulfitobacter sabulilitoris Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sabulilitoris 2562655 VANS00000000.1 Bac0009741 Candidatus Avelusimicrobium gallicola Pseudomonadati Elusimicrobiota Elusimicrobia Elusimicrobiales Elusimicrobiaceae Candidatus Avelusimicrobium Candidatus Avelusimicrobium gallicola 2562704 NFJD00000000.1 Bac0009742 Alcaligenaceae bacterium 429 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenaceae bacterium 429 2562948 SRSN00000000.1 Bac0009743 Streptomyces sp. A1547 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. A1547 2563105 SSBH00000000.1 Bac0009744 Crenobacter intestini Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Crenobacter Crenobacter intestini 2563443 STGJ00000000.1 Bac0009745 bacterium M00.F.Ca.ET.229.01.1.1 bacterium M00.F.Ca.ET.229.01.1.1 2563919 SRVH00000000.1 Bac0009746 Mesorhizobium sp. M1C.F.Ca.ET.193.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.193.01.1.1 2563926 SRUE00000000.1 Bac0009747 Mesorhizobium sp. M1C.F.Ca.ET.196.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.196.01.1.1 2563928 SRUH00000000.1 Bac0009748 Mesorhizobium sp. M1D.F.Ca.ET.184.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1D.F.Ca.ET.184.01.1.1 2563931 SRTX00000000.1 Bac0009749 Mesorhizobium sp. M2D.F.Ca.ET.185.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2D.F.Ca.ET.185.01.1.1 2563938 SRTY00000000.1 Bac0009750 Mesorhizobium sp. M2D.F.Ca.ET.225.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2D.F.Ca.ET.225.01.1.1 2563942 SRVE00000000.1 Bac0009751 Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 2563944 SRTO00000000.1 Bac0009752 Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 2563945 SRTP00000000.1 Bac0009753 Mesorhizobium sp. M5C.F.Ca.ET.164.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M5C.F.Ca.ET.164.01.1.1 2563957 SRTG00000000.1 Bac0009754 Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 2563960 SRTH00000000.1 Bac0009755 Mesorhizobium sp. M8A.F.Ca.ET.181.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.181.01.1.1 2563963 SRTV00000000.1 Bac0009756 Mesorhizobium sp. M8A.F.Ca.ET.208.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.208.01.1.1 2563969 SRUT00000000.1 Bac0009757 Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 2563971 SRUZ00000000.1 Bac0009758 Leptospira tipperaryensis Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira tipperaryensis 2564040 NZ_CP015217.1 Bac0009759 Streptomyces rhizosphaericola Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rhizosphaericola 2564098 SRZK00000000.1 Bac0009760 Ruminococcus bovis Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bovis 2564099 NZ_CP039381.1 Bac0009761 Arthrobacter sp. PAMC25564 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. PAMC25564 2565366 NZ_CP039290.1 Bac0009762 Pseudomonas atacamensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas atacamensis 2565368 SSBS00000000.1 Bac0009763 Sphingobium sp. PAMC28499 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. PAMC28499 2565554 NZ_CP039248.1 Bac0009764 Providencia sp. MGF014 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia sp. MGF014 2565573 SSCW00000000.1 Bac0009765 Flavobacterium supellecticarium Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium supellecticarium 2565924 SSNZ00000000.1 Bac0009766 Paenibacillus algicola Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus algicola 2565926 NZ_CP040396.1 Bac0009767 Pseudothauera rhizosphaerae Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Pseudothauera Pseudothauera rhizosphaerae 2565932 SSOD00000000.1 Bac0009768 Naasia lichenicola Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Naasia Naasia lichenicola 2565933 SSSM00000000.1 Bac0009769 Orlajensenia flava Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Orlajensenia Orlajensenia flava 2565934 SSSN00000000.1 Bac0009770 Citricoccus sp. SGAir0253 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Citricoccus Citricoccus sp. SGAir0253 2567881 NZ_CP039425.1 Bac0009771 Rhodococcus sp. SGAir0479 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. SGAir0479 2567884 NZ_CP039432.1 Bac0009772 Polyangium aurulentum Pseudomonadati Myxococcota Polyangiales Polyangiaceae Polyangium Polyangium aurulentum 2567896 NZ_CP079217.1 Bac0009773 Deinococcus sp. KSM4-11 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. KSM4-11 2568654 SSNX00000000.1 Bac0009774 Ferrimonas sediminicola Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas sediminicola 2569538 SWCI00000000.1 Bac0009775 Ferrimonas aestuarii Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas aestuarii 2569539 SWCJ00000000.1 Bac0009776 Desulfosediminicola ganghwensis Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfosediminicola Desulfosediminicola ganghwensis 2569540 NZ_CP050699.1 Bac0009777 Phreatobacter sp. NMCR1094 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phreatobacteraceae Phreatobacter Phreatobacter aquaticus 2570229 NZ_CP039865.1 Bac0009778 Labilibacter sediminis Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Labilibacter Labilibacter sediminis 2570926 VCHY00000000.1 Bac0009779 Brachybacterium sp. SGAir0954 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium sp. SGAir0954 2571029 NZ_CP027295.1 Bac0009780 Streptomyces oryziradicis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila oryziradicis 2571141 SUMC00000000.1 Bac0009781 Rhodococcus oryzae Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus oryzae 2571143 SUMD00000000.1 Bac0009782 Guyparkeria sp. SB14A Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Thioalkalibacteraceae Guyparkeria Guyparkeria sp. SB14A 2571147 SWAW00000000.1 Bac0009783 Pedobacter cryophilus Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter cryophilus 2571271 SWBP00000000.1 Bac0009784 Pedobacter polaris Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter polaris 2571273 SWBR00000000.1 Bac0009785 Novosphingobium sp. EMRT-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. EMRT-2 2571749 NZ_CP039697.1 Bac0009786 Vagococcus zengguangii Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus zengguangii 2571750 NZ_CP039712.1 Bac0009787 Thalassotalea mangrovi str. ZS-4 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea mangrovi 2572245 SWDB00000000.1 Bac0009788 Sphingomonas baiyangensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas baiyangensis 2572576 SWKR00000000.1 Bac0009789 Flavobacterium sp. ASW18X Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. ASW18X 2572595 SWKK00000000.1 Bac0009790 Exobacillus caeni Bacillati Bacillota Bacilli Caryophanales Guptibacillaceae Exobacillus Exobacillus caeni 2574798 SWLG00000000.1 Bac0009791 Nocardioides jishulii Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides jishulii 2575440 SZPY00000000.1 Bac0009792 Herbidospora galbida Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Herbidospora Herbidospora galbida 2575442 SZQA00000000.1 Bac0009793 Escherichia sp. MR Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. MR 2575922 SZVK00000000.1 Bac0009794 Arthrobacter sp. NamB2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. NamB2 2576035 SZWI00000000.1 Bac0009795 Dyadobacter frigoris Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter frigoris 2576211 SZVO00000000.1 Bac0009796 Caloramator sp. E03 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Caloramator Caloramator sp. E03 2576307 NZ_CP040093.1 Bac0009797 Bacillus sp. FDAARGOS_527 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FDAARGOS_527 2576356 NZ_CP033792.1 Bac0009798 Streptococcus sp. 1643 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. 1643 2576376 NZ_CP040231.1 Bac0009799 Citrobacter sp. TBCS-14 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. TBCS-14 2576409 SZWM00000000.1 Bac0009800 Citrobacter sp. wls831 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls831 2576410 SZWN00000000.1 Bac0009801 Citrobacter sp. wls829 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls829 2576412 SZWP00000000.1 Bac0009802 Citrobacter sp. wls827 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls827 2576414 SZWR00000000.1 Bac0009803 Citrobacter sp. wls758 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls758 2576416 SZWT00000000.1 Bac0009804 Citrobacter sp. wls718 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls718 2576418 SZWV00000000.1 Bac0009805 Citrobacter sp. wls707 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls707 2576428 SZXF00000000.1 Bac0009806 Citrobacter sp. wls618 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls618 2576433 SZXK00000000.1 Bac0009807 Citrobacter sp. wls617 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls617 2576434 SZXL00000000.1 Bac0009808 Citrobacter sp. wls615 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls615 2576435 SZXM00000000.1 Bac0009809 Citrobacter sp. wls613 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls613 2576436 SZXN00000000.1 Bac0009810 Pseudarthrobacter sp. NamB4 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter sp. NamB4 2576837 VAHM00000000.1 Bac0009811 Pseudarthrobacter sp. NamE2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter sp. NamE2 2576838 VAHN00000000.1 Bac0009812 Microbulbifer harenosus Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer harenosus 2576840 VANI00000000.1 Bac0009813 Microbacterium sp. 5K110 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. 5K110 2578104 VBUM00000000.1 Bac0009814 Variovorax sp. KBS0712 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. KBS0712 2578111 VCCD00000000.2 Bac0009815 Parasedimentitalea maritima Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Parasedimentitalea Parasedimentitalea maritima 2578117 VAUA00000000.1 Bac0009816 Nautilia sp. PV-1 Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Nautilia Nautilia sp. PV-1 2579250 NZ_CP026530.1 Bac0009817 Picosynechococcus sp. PCC 11901 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus Picosynechococcus sp. PCC 11901 2579791 NZ_CP040356.1 Bac0009818 Paroceanicella profunda Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paroceanicella Paroceanicella profunda 2579971 NZ_CP040821.1 Bac0009819 Brevundimonas sp. SGAir0440 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. SGAir0440 2579977 NZ_CP039435.1 Bac0009820 Paenibacillus antri Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus antri 2582848 VCIW00000000.1 Bac0009821 Lentibacillus cibarius Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lentibacillus Lentibacillus cibarius 2583219 VCIA00000000.1 Bac0009822 Ruminococcus sp. KGMB03662 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. KGMB03662 2583230 VCGV00000000.1 Bac0009823 Rhizobium indicum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium indicum 2583231 NZ_CP054034.1 Bac0009824 Rhizobium sp. MHM7A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. MHM7A 2583233 VCHT00000000.1 Bac0009825 Agromyces tardus Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces tardus 2583849 RHHB00000000.1 Bac0009826 Sphingorhabdus sp. SMR4y Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Sphingorhabdus Sphingorhabdus sp. SMR4y 2584094 NZ_CP022336.1 Bac0009827 Sutterella faecalis "*Sutterella faecalis* is a nonsporulating bacterium belonging to the family Ruminococcaceae, which is part of the diverse microbial community residing in the human gut. This organism is classified as a member of the phylum Bacteroidetes and is primarily known for its role in the human gut microbiota, where it is believed to participate in various metabolic processes and contribute to gut health. *Sutterella faecalis* has been studied for its potential association with various health conditions, including inflammatory bowel disease (IBD) and autism spectrum disorders. This suggests that the strain may have implications for human health, possibly influencing gut inflammation or neurodevelopmental processes through its metabolic byproducts. While the precise metabolic pathways and ecological roles of *S. faecalis* remain under investigation, the bacterium is thought to interact with other gut microbes, forming a complex network that impacts overall gut homeostasis. Notably, *Sutterella* species, including *S. faecalis*, have been found in increased levels in certain clinical conditions, hinting at a potential role in dysbiosis—a state of microbial imbalance in the gut. This unique ecological insight underscores the importance of understanding gut microbiota dynamics, as alterations in populations like *S. faecalis* can influence host health significantly and present opportunities for developing targeted probiotic therapies or dietary interventions to restore microbial balance." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella faecalis No 1 Nonsporulating 2584944 NZ_CP040882.1 Bac0009828 Pasteurellaceae bacterium Phil11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium Phil11 2585023 VDHB00000000.1 Bac0009829 Testudinibacter sp. TR-2022 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Testudinibacter Testudinibacter sp. TR-2022 2585025 VDHD00000000.1 Bac0009830 Rubellimicrobium rubrum Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Rubellimicrobium Rubellimicrobium rubrum 2585369 VDFU00000000.1 Bac0009831 Streptomyces sp. 3MP-14 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 3MP-14 2586636 VDLZ00000000.2 Bac0009832 Thermococcus indicus Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus indicus 2586643 NZ_CP040847.1 Bac0009833 Oceanicola sp. D3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Oceanicola Oceanicola sp. D3 2587163 NZ_CP040932.1 Bac0009834 Buttiauxella sp. B2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella sp. B2 2587812 VEXQ00000000.1 Bac0009835 Candidatus Syntrophosphaera thermopropionivorans str. W5 Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonadia Candidatus Cloacimonadales Candidatus Cloacimonadaceae Candidatus Syntrophosphaera Candidatus Syntrophosphaera thermopropionivorans 2593015 SMOG00000000.1 Bac0009836 Candidatus Methanosuratincola subterraneus Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae Candidatus Methanosuratincola (ex Vanwonterghem et al. 2016) Candidatus Methanosuratincola subterraneus 2593994 RXGA00000000.1 Bac0009837 Candidatus Eremiobacter antarcticus Bacillati Vulcanimicrobiota Vulcanimicrobiia Candidatus Eremiobacterales Candidatus Eremiobacteraceae Candidatus Eremiobacter Candidatus Eremiobacter antarcticus 2599629 QHBK00000000.1 Bac0009838 Candidatus Aquarickettsia rohweri str. a_cerv_44 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Candidatus Midichloriaceae Candidatus Aquarickettsia Candidatus Aquarickettsia rohweri 2602574 RXFM00000000.1 Bac0009839 Pukyongiella litopenaei Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pukyongiella Pukyongiella litopenaei 2605946 NZ_CP043623.1 Bac0009840 Hornefia porci Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Hornefia Hornefia porci 2652292 MJIE00000000.1 Bac0009841 Paraburkholderia atlantica Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia atlantica 2654982 NC_014118.1 Bac0009842 Fusobacterium pseudoperiodonticum str. KCOM 2305 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum 2663009 NZ_CP024703.1 Bac0009843 Fusobacterium pseudoperiodonticum str. KCOM 1321 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum 2663009 PEQX00000000.1 Bac0009844 Fusobacterium pseudoperiodonticum str. KCOM 2555 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum 2663009 NZ_CP024704.1 Bac0009845 Lichenicoccus roseus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Lichenicoccus Lichenicoccus roseus 2683649 VCDI00000000.1 Bac0009846 Pseudomonas izuensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas izuensis 2684212 NZ_AP017423.2 Bac0009847 Solilutibacter oculi Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Solilutibacter Solilutibacter oculi 2698682 NZ_CP029556.1 Bac0009848 Streptococcus chosunensis Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus chosunensis 2707003 RBCK00000000.1 Bac0009849 Candidatus Protofrankia datiscae str. 4085684 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Protofrankia Candidatus Protofrankia datiscae 2714109 NC_015657.1 Bac0009850 Streptococcus vicugnae Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus vicugnae 2740579 SJWY00000000.1 Bac0009851 Peptidiphaga gingivicola Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Peptidiphaga Peptidiphaga gingivicola 2741497 LVZK00000000.1 Bac0009852 Halomonas citrativorans Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas citrativorans 2742612 FUKM00000000.1 Bac0009853 Xanthomonas hortorum pv. gardneri Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hortorum 2754056 NZ_CP018731.1 Bac0009854 Komagataeibacter melaceti Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter melaceti 2766577 QUWV00000000.1 Bac0009855 Tenacibaculum finnmarkense Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum finnmarkense 2781243 OENA00000000.1 Bac0009856 Vibrio campbellii ATCC BAA-1116 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 2902295 NC_009783.1 Bac0009857 Prevotella communis Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella communis 2913614 FNCQ00000000.1 Bac0009858 Roseateles chitinivorans Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles chitinivorans 2917965 PEOG00000000.1 Bac0009859 Acinetobacter amyesii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter amyesii 2942470 MVKX00000000.1 Bac0009860 Candidatus Accumulibacter vicinus Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter vicinus 2954382 JDSS00000000.2 Bac0009861 Pseudomonas nunensis Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas nunensis 2961896 LIUV00000000.1 Bac0009862 Stutzerimonas frequens Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas frequens 2968969 NZ_CP029772.1 Bac0009863 Candidatus Parvibacillus calidus Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae Candidatus Parvibacillus Candidatus Parvibacillus calidus 2982025 JZQW00000000.1 Bac0009864 Paraglaciecola sp. T6c Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Paraglaciecola sp. T6c 3042615 NC_008228.1 Bac0009865 Imbroritus primus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Imbroritus Imbroritus primus 3058603 AKCV00000000.2 Bac0009866 Firmicutes bacterium CAG:272 str. MGS:272 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Candidatus Colimorpha Candidatus Colimorpha enterica 3083063 CBFW000000000.1 Bac0009867 Candidatus Iainarchaeum sp. Nanobdellati Candidatus Iainarchaeota Candidatus Iainarchaeia Candidatus Iainarchaeales Candidatus Iainarchaeaceae Candidatus Iainarchaeum Candidatus Iainarchaeum sp. 3101447 NZBD00000000.1 Bac0009868 Candidatus Hydrothermota bacterium Candidatus Hydrothermota Candidatus Hydrothermota bacterium 3107146 QNDO00000000.1 Bac0009869 Candidatus Aenigmatarchaeota archaeon Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmatarchaeota archaeon 3121606 QMZP00000000.1 Bac0009870 Phocaeicola salanitronis DSM 18170 "Phocaeicola salanitronis DSM 18170 is a Gram-positive bacterium characterized by its rod-shaped morphology. This microorganism is part of the diverse microbial community found in marine environments, where it contributes to the complex interactions within these ecosystems. ↵↵Being classified as a member of the genus Phocaeicola, this species is noteworthy for its unique biochemical properties and metabolic capabilities, which allow it to thrive in specific ecological niches. The strain DSM 18170 has been isolated from a marine environment, highlighting its potential role in the degradation of organic matter and nutrient cycling within coastal ecosystems.↵↵The Gram-positive nature of Phocaeicola salanitronis indicates a thick peptidoglycan layer in its cell wall, which may confer certain advantages in terms of environmental resilience and stability. The presence of this trait suggests that P. salanitronis could be well-suited to withstand fluctuations in salinity and other physicochemical factors typical of its marine habitat.↵↵Overall, the study of Phocaeicola salanitronis DSM 18170 offers valuable insights into the microbial diversity of marine ecosystems and underscores the importance of Gram-positive bacteria in ecological processes such as nutrient recycling and organic matter decomposition. Further investigation into its metabolic pathways may reveal additional roles it plays in its native habitat." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola salanitronis 16865 0 NC_015166.1 Bac0009871 [Phormidium ambiguum] IAM M-71 Bacillati Cyanobacteriota Cyanophyceae Aerosakkonematales Aerosakkonemataceae Floridanema [Phormidium ambiguum] IAM M-71 0 MRCE00000000.1 Bac0009872 Salmonella enterica subsp. enterica serovar 1 4 [5] 12:i:- "Salmonella enterica subsp. enterica serovar 1 4 [5] 12:i:- is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This organism thrives optimally at 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting a close association with such environments. As a chemoorganotroph, S. enterica subsp. enterica serovar 1 4 [5] 12:i:- derives its energy from organic compounds, further indicating its adaptation to a host-associated habitat.↵↵The microaerophilic nature of this bacterium implies that it requires reduced levels of oxygen for growth, which is often found in specific niches within host organisms. This trait may influence its ecological interactions within the microbiota of the host, potentially affecting nutrient absorption and microbial competition. The formation of chains may enhance its survival and colonization abilities within the host, allowing for efficient nutrient uptake and interaction with the host's immune system.↵↵In summary, the physiological traits of Salmonella enterica subsp. enterica serovar 1 4 [5] 12:i:- reflect its adaptation to a microaerophilic, host-associated environment, which may play a significant role in its ecological dynamics within the gastrointestinal tract of various hosts. Understanding these characteristics can provide insights into the microbial ecology of enteric pathogens and their interactions with host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NZ_CP040652.1 Bac0009873 Crocosphaera watsonii WH 8501 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Aphanothecaceae Crocosphaera Crocosphaera watsonii 165597 AADV00000000.2 Bac0009874 Burkholderia cenocepacia PC184 "Burkholderia cenocepacia PC184 is a Gram-negative, nonsporulating, rod-shaped bacterium that exhibits facultative aerobic metabolism. This organism is part of a diverse group of bacteria known for their ability to thrive in various habitats, which may include soil, water, and potentially in association with plant and animal hosts. The facultative aerobic nature of B. cenocepacia PC184 allows it to utilize oxygen when available while being capable of anaerobic respiration or fermentation in oxygen-limited environments, enhancing its adaptability to fluctuating ecological conditions.↵↵The ability to inhabit multiple environments suggests that B. cenocepacia PC184 could play significant roles in biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Its metabolic versatility may also enable it to interact with a range of microbial communities, potentially influencing community dynamics and ecosystem functions. Understanding the ecological implications of B. cenocepacia PC184's traits could provide insights into its contributions to microbial diversity and resilience in various ecosystems, demonstrating the complexity of microbial life in response to environmental changes." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 350702 AAKX00000000.1 Bac0009875 Yersinia mollaretii ATCC 43969 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia mollaretii 349967 AALD00000000.2 Bac0009876 Stigmatella aurantiaca DW4/3-1 gsam_325 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca AAMD00000000.1 Bac0009877 Erythrobacter sp. NAP1 1099465005032 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. NAP1 237727 AAMW00000000.1 Bac0009878 Congregibacter litoralis KT71 Conli_1 "Congregibacter litoralis KT71 Conli_1 is a Gram-negative, microaerophilic bacterium characterized by its unique star and dumbbell shapes, exhibiting pleomorphism. This strain does not form spores, which suggests that it may rely on other mechanisms for survival and adaptation in its environment. It thrives optimally at a temperature of 29.0 °C, indicating a preference for moderately warm conditions, typical of certain aquatic environments.↵↵The morphological diversity of Congregibacter litoralis KT71 Conli_1 may confer advantages in its ecological niche, potentially facilitating attachment to surfaces or interaction with other microorganisms. Its microaerophilic nature suggests that it occupies environments with limited oxygen availability, which could include stratified aquatic ecosystems, where oxygen gradients are prevalent. ↵↵This bacterium's unique traits may play a crucial role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling, making it a significant player in its ecological context. Further exploration of its metabolic capabilities could provide insights into its role in microbial communities and its potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Congregibacter Congregibacter litoralis Gram-negative star/dumbbell/pleomorphic microaerophile 29 mesophilic non-spore-forming 393662 AAOA00000000.2 Bac0009879 Gamma proteobacterium HTCC2207 1099215844456 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae gamma proteobacterium HTCC2207 314287 AAPI00000000.1 Bac0009880 Limosilactobacillus reuteri subsp. rodentium strain 100-23 "Limosilactobacillus reuteri subsp. rodentium strain 100-23 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. L. reuteri subsp. rodentium is known to inhabit multiple habitats, suggesting a versatile ecological role and potential adaptability to varying environmental conditions.↵↵The chain formation characteristic of this strain may enhance its survival and colonization in diverse ecological niches. The facultative anaerobic nature allows L. reuteri subsp. rodentium strain 100-23 to exploit various metabolic pathways, making it well-suited for environments where oxygen availability fluctuates. Such adaptability may be crucial for its persistence in the gut microbiota of various hosts, where it can interact with other microbial communities and contribute to gut health.↵↵Overall, the ecological versatility of Limosilactobacillus reuteri subsp. rodentium strain 100-23 highlights its potential significance in microbiome studies, particularly in understanding the roles of lactic acid bacteria in host-associated ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 AAPZ00000000.2 Bac0009881 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 "Fusobacterium nucleatum subsp. polymorphum ATCC 10953 is a Gram-negative, rod-shaped bacterium that typically exists as pairs. This nonsporulating microbe is classified as a chemoheterotroph, primarily deriving its energy from organic compounds in its environment. It thrives in anaerobic conditions, making it well-suited for its natural habitat within the host gut, where oxygen levels are minimal.↵↵The optimal growth temperature for this subspecies is approximately 37.0°C, aligning with the physiological temperature of the human body, which further emphasizes its adaptation to host-associated environments. As a member of the Fusobacterium genus, F. nucleatum subsp. polymorphum is notable for its role in the complex microbiota of the gastrointestinal tract.↵↵Given its anaerobic nature and specific habitat, F. nucleatum subsp. polymorphum may contribute to various metabolic processes within the gut ecosystem, potentially influencing nutrient absorption and gut health. Its presence in the gut microbiome underscores the intricate relationships between host and microbial communities, suggesting that it may play a role in maintaining microbial balance or contributing to metabolic functions essential for host well-being. Further research into its interactions within the gut environment could provide deeper insights into the symbiotic relationships that define gut microbiota dynamics." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 AARG00000000.1 Bac0009882 Staphylococcus aureus subsp. aureus USA300_TCH959 "Staphylococcus aureus subsp. aureus USA300_TCH959 is a Gram-positive coccus that typically presents in clusters or singles. This strain is facultatively anaerobic, allowing it to thrive in various oxygen conditions, and its optimal growth temperature is notably low at 3.0°C, which is atypical for many pathogenic bacteria in this genus. ↵↵As a host-associated microbe, S. aureus subsp. aureus USA300_TCH959 is commonly found in association with animal or human hosts, suggesting a potential adaptability to different biological environments. While specific pathogenic traits are not detailed in the provided information, the S. aureus subspecies is generally known for its ability to cause a range of infections, indicating its relevance to clinical microbiology. ↵↵The unique capacity of this strain to grow at such low temperatures may offer insights into its ecological niche, potentially allowing it to persist in cooler environments that are less favorable for other strains. This characteristic could play a role in its survival and transmission dynamics within host populations, highlighting the adaptive strategies employed by S. aureus in diverse ecological contexts." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 450394 AASB00000000.2 Bac0009883 Mariprofundus ferrooxydans PV-1 1099921033873 Pseudomonadati Pseudomonadota Candidatius Mariprofundia Mariprofundales Mariprofundaceae Mariprofundus Mariprofundus ferrooxydans microaerophile 314344 AATS00000000.1 Bac0009884 Synechococcus sp. BL107 1099739244038 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. BL107 313625 AATZ00000000.1 Bac0009885 Synechococcus sp. RS9916 1100013017034 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. RS9916 221359 AAUA00000000.1 Bac0009886 Vibrio cholerae 2740-80 "Vibrio cholerae 2740-80 is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells rather than in clusters or chains. This strain is a heterotrophic organism, which means it relies on organic compounds for energy. It exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments, thereby increasing its adaptability to varying habitats.↵↵Optimal growth of V. cholerae 2740-80 occurs at a temperature of 20.0°C, suggesting a preference for cooler environments, which may be indicative of its ecological niches. The organism's ability to survive and grow in multiple habitats underscores its ecological versatility and potential for colonization in diverse environments.↵↵An intriguing aspect of V. cholerae 2740-80 is its adaptability to fluctuating oxygen levels, which may play a significant role in its survival and persistence in aquatic ecosystems, where oxygen concentration can vary. This adaptability not only enhances its ecological distribution but may also influence its interactions with other microorganisms and the surrounding environment. Understanding these traits can provide insights into the ecological dynamics of Vibrio species in natural water bodies." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 412614 AAUT00000000.2 Bac0009887 Bacteroides caccae ATCC 43185 "Bacteroides caccae ATCC 43185 is a Gram-negative, anaerobic bacterium that is part of the diverse microbiota found in the human gastrointestinal tract. As a member of the Bacteroides genus, this species plays a crucial role in the fermentation of complex carbohydrates, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are vital for human health. The anaerobic nature of Bacteroides caccae indicates its adaptation to environments devoid of oxygen, where it thrives alongside other gut microbiota, facilitating nutrient absorption and maintaining gut homeostasis.↵↵Research suggests that Bacteroides species, including Bacteroides caccae, may influence host metabolism and immune responses. The presence of this anaerobic bacterium in the gut microbiome is associated with the digestion of polysaccharides that human enzymes cannot break down, highlighting its potential importance in nutrient cycling within the gut ecosystem. Furthermore, the interactions between Bacteroides caccae and other microbial species may contribute to the overall stability and resilience of the gut microbiota, thus underscoring its role in maintaining a balanced intestinal environment. Understanding the characteristics and functions of Bacteroides caccae may provide insights into the broader implications of gut microbiota on human health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe 411901 AAVM00000000.2 Bac0009888 [Ruminococcus] torques ATCC 27756 "[Ruminococcus] torques ATCC 27756 is a Gram-positive, anaerobic cocci bacterium that plays a significant role in the microbial ecology of the gastrointestinal tract. This organism is part of the diverse community of gut microbiota, contributing to the fermentation of dietary fibers and the breakdown of complex carbohydrates. Its anaerobic nature indicates that it thrives in oxygen-limited environments, which is typical of the intestinal habitat where it is found.↵↵The coccoid morphology of [Ruminococcus] torques suggests a possible role in maintaining gut health through its interactions with other microorganisms and its metabolic activities. As an anaerobe, it likely participates in the fermentation processes that produce short-chain fatty acids, which are essential for colonic health and provide energy to colonocytes. ↵↵This strain, referenced by its ATCC designation, is valuable for research purposes, particularly in studies focusing on the human microbiome and the implications of gut bacteria in health and disease. Understanding the metabolic capabilities of [Ruminococcus] torques could provide insights into its potential benefits in modulating gut health and its interactions within the complex ecosystem of the gut microbiota. Furthermore, its role in fiber fermentation may highlight its importance in diets rich in plant-based materials, emphasizing the need for further exploration into how such microbes contribute to host nutrition and overall well-being." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter torques Positive Cocci Anaerobe 411460 AAVP00000000.2 Bac0009889 Thermosinus carboxydivorans Nor1 "Thermosinus carboxydivorans Nor1 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 45.0 °C. This microbe is primarily found in the extreme environments of hot springs, where it likely plays a role in biogeochemical processes, particularly in the conversion of carbon compounds. ↵↵As a thermophilic organism, T. carboxydivorans Nor1's adaptation to high temperatures may influence its metabolic pathways, possibly enhancing its efficiency in utilizing available substrates in its habitat. The anaerobic requirement suggests a reliance on fermentation or other anaerobic metabolic processes, which could be critical for its survival and growth in the oxygen-depleted environments characteristic of hot springs. ↵↵The ecological significance of T. carboxydivorans Nor1 may extend to its interactions within microbial communities in these extreme habitats, where it could contribute to organic matter degradation and nutrient cycling. Understanding the metabolic capabilities of such extremophiles can provide insights into the evolutionary adaptations of microorganisms in high-temperature environments, as well as their potential applications in biotechnology, such as bioenergy production." Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Thermosinus Thermosinus carboxydivorans Gram-negative rod anaerobic 45 thermophilic hot spring non-spore-forming 401526 AAWL00000000.1 Bac0009890 Dorea longicatena DSM 13814 "Dorea longicatena DSM 13814 is a Gram-positive, anaerobic bacterium characterized by its ability to thrive in oxygen-free environments. As a member of the genus Dorea, this microbe is notable for its unique metabolic capabilities, which enable it to ferment a variety of carbohydrates. This trait is consistent with its classification as an anaerobe, suggesting that it plays a significant role in the fermentation processes occurring in the gastrointestinal tracts of various hosts.↵↵The Gram-positive nature of Dorea longicatena indicates the presence of a thick peptidoglycan layer in its cell wall, which is typical of bacteria in this category and may confer certain advantages in anaerobic conditions, such as resistance to environmental stresses found in the gut. These characteristics hint at its potential role in contributing to the gut microbiome's diversity and functionality, particularly in the breakdown of complex polysaccharides.↵↵Moreover, the presence of Dorea longicatena in the gut microbiota may have implications for nutrient absorption and overall digestive health. Its metabolic activities could influence the production of short-chain fatty acids, which are important for gut health and provide energy to colonocytes. Therefore, Dorea longicatena may contribute not only to the balance of the microbial community but also to the host's metabolic processes and health status, underlining its significance in anaerobic ecosystems." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea longicatena Positive Anaerobe 411462 AAXB00000000.2 Bac0009891 Bifidobacterium adolescentis L2-32 "Bifidobacterium adolescentis L2-32 is a Gram-positive, rod-shaped bacterium that typically exists as single cells and demonstrates anaerobic growth. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found within the intestinal tract of warm-blooded hosts. As a member of the Bifidobacterium genus, B. adolescentis is commonly associated with the gastrointestinal microbiota of humans and other vertebrates, suggesting its significant role in host-associated environments.↵↵The anaerobic nature of B. adolescentis L2-32 indicates its adaptation to low-oxygen conditions, which are prevalent in the gut. This characteristic is essential for its survival and functionality within the complex microbial communities present in the host. The presence of such bacteria is often linked to various health benefits, including the fermentation of dietary fibers and the production of short-chain fatty acids, which can have positive effects on gut health and metabolism.↵↵Given its association with the host and anaerobic lifestyle, Bifidobacterium adolescentis L2-32 may play a crucial role in maintaining intestinal homeostasis and influencing the overall health of the host by modulating the gut microbiome. The strain’s specific adaptations to anaerobic environments underscore the intricate relationships between gut bacteria and their hosts, highlighting the importance of microbial diversity in maintaining health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles 411481 AAXD00000000.2 Bac0009892 Pseudoflavonifractor capillosus ATCC 29799 "Pseudoflavonifractor capillosus ATCC 29799 is a Gram-negative, anaerobic bacterium that has been characterized for its unique metabolic capabilities. As a member of the phylum Firmicutes, this microbe is known for its ability to thrive in oxygen-depleted environments, making it particularly relevant in studies of anaerobic microbiomes. The organism is typically found in the gastrointestinal tract of mammals, where it plays a role in the complex ecosystem of gut microbiota.↵↵Pseudoflavonifractor capillosus is noted for its fermentative metabolism, which allows it to utilize various substrates in the absence of oxygen. The capacity for anaerobic growth is a significant trait, as it enables the bacterium to engage in biochemical processes that contribute to the fermentation of dietary fibers and other complex carbohydrates. This metabolic versatility suggests a potential role in the breakdown of polysaccharides that may otherwise be indigestible, thus contributing to the overall efficiency of nutrient absorption in the host.↵↵The presence of Pseudoflavonifractor capillosus in the gut microbiome highlights the intricate interactions between host and microbial communities, especially in maintaining gut health and metabolic functions. Understanding the specific roles of such anaerobic bacteria may provide insights into their contributions to digestion and the potential therapeutic applications in managing gastrointestinal disorders." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor capillosus negative anaerobic 411467 AAXG00000000.2 Bac0009893 Schaalia dentiphila ATCC 17982 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia dentiphila 411466 AAYI00000000.2 Bac0009894 Clostridium sp. L2-50 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. L2-50 2860053 AAYW00000000.2 Bac0009895 Haemophilus influenzae 22.1-21 "Haemophilus influenzae 22.1-21 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 35.0°C. This microbe exhibits a versatile metabolic capability, functioning as both an aerobe and a facultative anaerobe, allowing it to adapt to varying oxygen levels in its environment. Its habitat is predominantly host-associated, indicating a significant relationship with a host organism, which may provide insights into its ecological role and potential interactions within a biological system.↵↵Given its classification within the Haemophilus genus, H. influenzae 22.1-21 may participate in complex microbial communities within host microbiomes, influencing host health or disease states. The ability to grow in the presence of both oxygen and without it suggests that this strain can occupy various niches within the host, potentially adapting to localized conditions such as tissue oxygenation levels. This adaptability may also facilitate its survival in diverse environmental conditions encountered within the host. Understanding the specific roles of H. influenzae 22.1-21 in host-associated habitats may contribute to broader insights into microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 374927 AAZD00000000.1 Bac0009896 Streptococcus pneumoniae SP6-BS73 "Streptococcus pneumoniae SP6-BS73 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. This strain thrives optimally at a temperature of 30.0°C, indicating a preference for moderate environments. As a facultative anaerobe, S. pneumoniae SP6-BS73 can grow in both aerobic and anaerobic conditions, which suggests its adaptability to various habitats.↵↵The ability of this microbe to inhabit multiple environments may reflect its ecological versatility, allowing it to occupy diverse niches where oxygen availability fluctuates. Such adaptability could facilitate interactions with other microbial communities and contribute to its survival in complex ecosystems.↵↵Overall, the traits of S. pneumoniae SP6-BS73 highlight its resilience and potential ecological significance, warranting further investigation into its role within microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 406557 ABAA00000000.1 Bac0009897 Streptococcus pneumoniae SP14-BS69 "Streptococcus pneumoniae SP14-BS69 is a Gram-positive coccus that typically arranges itself in chains or pairs. This microbe thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic characteristics, allowing it to grow in both the presence and absence of oxygen. The ability to adapt to varying oxygen levels suggests a versatile metabolic capacity, enabling it to occupy multiple habitats.↵↵The presence of S. pneumoniae SP14-BS69 in diverse environments may reflect its ecological adaptability and potential interactions with various microbial communities. Given its morphological and physiological traits, this strain may play a significant role in nutrient cycling within its habitats, contributing to the dynamics of microbial ecosystems. Further exploration of its ecological interactions could provide insights into its functional roles in natural environments and its potential adaptations to specific niches." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 406560 ABAD00000000.1 Bac0009898 Bacillus cereus NVH0597-99 "Bacillus cereus NVH0597-99 is a Gram-positive, rod-shaped bacterium that typically forms chains and is characterized as an aerobic organism, thriving optimally at a temperature of 25.0°C. This strain is part of the Bacillus cereus group, which is known for its diverse array of habitats, suggesting a versatile ecological niche that may include soil, water, and decaying organic matter. ↵↵The aerobic nature of B. cereus NVH0597-99 indicates its reliance on oxygen for growth and metabolism, which may play a crucial role in its adaptation to various environmental conditions. The ability to form chains may enhance its survival in certain environments by allowing for collective behavior or increased resistance to environmental stresses.↵↵The varied habitats associated with this strain imply its potential role in nutrient cycling and decomposition processes, contributing to the overall microbial community dynamics. This adaptability highlights the ecological significance of B. cereus NVH0597-99 in diverse ecosystems, where it may participate in interactions with other microorganisms and contribute to soil health and fertility. Understanding the traits and ecological roles of such strains is essential for appreciating their contributions to microbial diversity and ecosystem functioning." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 451707 ABDK00000000.2 Bac0009899 Clostridium botulinum C str. Eklund "Clostridium botulinum C str. Eklund is a Gram-positive, rod-shaped bacterium that exhibits a versatile cell arrangement, occurring in pairs, singles, or chains. This strain thrives optimally at 37.0°C and is classified as a chemoorganotroph, meaning it derives energy from organic compounds, which is typical for many anaerobic microorganisms. As an obligate anaerobe, C. botulinum C str. Eklund grows in environments devoid of oxygen, which may include various habitats such as soil, sediments, and the intestinal tracts of animals.↵↵The ability of C. botulinum to adapt to multiple habitats reflects its ecological resilience and its potential role in nutrient cycling within anaerobic environments. This adaptability also emphasizes the importance of understanding the specific ecological niches occupied by this strain and similar organisms, particularly in relation to their metabolic functions and interactions with other microbial communities. Given its anaerobic nature, the study of C. botulinum C str. Eklund can provide insights into the dynamics of anaerobic ecosystems and the role of such bacteria in organic matter decomposition." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 445337 ABDQ00000000.1 Bac0009900 Clostridium perfringens B str. ATCC 3626 "Clostridium perfringens B str. ATCC 3626 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, singles, or chains and thrives in anaerobic environments. This strain is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. Optimal growth occurs at a temperature of 37.0°C, which aligns with the physiological conditions found in many host organisms. ↵↵As an anaerobic microbe, C. perfringens B str. ATCC 3626 is primarily associated with host environments, suggesting a close relationship with the gastrointestinal tracts of animals and potentially humans. This habitat may influence its metabolic processes and survival strategies, enabling it to utilize host-derived organic substrates effectively. ↵↵The arrangement of cells in pairs, singles, and chains further illustrates its adaptability to different microenvironments within a host. Understanding the traits of this strain can provide insights into its ecological role and metabolic capabilities in anaerobic niches. The ability of C. perfringens to thrive in host-associated habitats underscores its potential significance in microbiological studies, particularly regarding its interactions with host physiology and its role in the gut microbiome, where it may contribute to the complex dynamics of microbial communities." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 451754 ABDV00000000.1 Bac0009901 Clostridium perfringens E str. JGS1987 "Clostridium perfringens E str. JGS1987 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, singles, or chains. This strain is classified as an anaerobic chemoorganotroph, indicating its reliance on organic compounds for energy in environments devoid of oxygen. C. perfringens E str. JGS1987 thrives optimally at 37.0°C, a temperature that coincides with the physiological conditions found in many host organisms.↵↵The habitat of this strain is primarily host-associated, reflecting its adaptation to living in close association with various animal hosts. Such a lifestyle suggests that C. perfringens E str. JGS1987 is well-suited to exploit the nutrient-rich environments found within the gastrointestinal tracts of these hosts. The ability to form chains and pairs may facilitate its colonization and persistence in these environments, allowing for efficient nutrient acquisition and potential interactions with the host microbiome.↵↵Understanding the specific ecological niches occupied by C. perfringens E str. JGS1987 can provide insights into its role within the larger microbial community of the host. This strain exemplifies how anaerobic bacteria can thrive in oxygen-limited environments while contributing to the complex dynamics of host-associated microbiomes, potentially influencing both host health and microbial interactions." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 451755 ABDW00000000.1 Bac0009902 Faecalibacterium prausnitzii M21/2 "Faecalibacterium prausnitzii M21/2 is a Gram-positive, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, deriving its energy from organic compounds in an anaerobic environment. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found in the human gastrointestinal tract, suggesting its ecological niche within the gut microbiome. ↵↵F. prausnitzii is notable for its role in maintaining gut health, as it is commonly found in various habitats, particularly within the intestines of mammals. Its anaerobic nature indicates that it does not require oxygen for growth, which is a characteristic feature of many gut microbiota that contribute to a balanced microbial ecosystem.↵↵The presence of F. prausnitzii has been associated with beneficial effects on gut health, highlighting its potential role in the modulation of intestinal inflammation and maintenance of homeostasis in the gastrointestinal environment. Understanding the ecological functions of this bacterium may provide insights into its contributions to microbial diversity and metabolic processes within the gut, further emphasizing its importance in the study of human microbiota and its implications for health and disease." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 411485 ABED00000000.2 Bac0009903 Parvimonas micra ATCC 33270 "Parvimonas micra ATCC 33270 is a Gram-positive, nonsporulating anaerobic bacterium that thrives optimally at 37.0°C. As a chemoheterotroph, it derives energy by metabolizing organic compounds, which facilitates its survival in various habitats. This organism is commonly associated with anaerobic environments, which may include oral cavities and gastrointestinal tracts, reflecting its adaptability to diverse ecological niches.↵↵The nonsporulating nature of P. micra suggests a reliance on stable environmental conditions for survival rather than the ability to withstand extreme stressors through sporulation. Its anaerobic requirement indicates that P. micra is likely involved in microbial communities where oxygen levels are low, contributing to the complex interactions and metabolic processes in these ecosystems. ↵↵Understanding the ecological role of P. micra can enhance our knowledge of microbial diversity and interactions within anaerobic environments, particularly in relation to its potential contributions to nutrient cycling and the overall microbial ecology of the human body. Given its metabolic capabilities, P. micra may play a significant role in the degradation of organic matter in anaerobic habitats, further underscoring its ecological importance in maintaining the balance of microbial communities." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Parvimonas micra Positive No 1 Anaerobe 37 Chemoheterotroph Multiple Nonsporulating 411465 ABEE00000000.2 Bac0009904 Alistipes putredinis DSM 17216 "Alistipes putredinis DSM 17216 is a Gram-negative bacterium that has garnered attention for its role within the human microbiome. This anaerobic organism is characterized by its ability to thrive in oxygen-limited environments, a trait that aligns with its isolation from human fecal samples. The bacterium's Gram-negative status indicates a distinctive cell wall structure, which may play a role in its interactions within the gut ecosystem.↵↵As a member of the Alistipes genus, A. putredinis is noted for its potential involvement in the metabolism of complex carbohydrates, contributing to the overall functionality of the gut microbiota. This metabolic capability suggests that A. putredinis may participate in the fermentation processes that help maintain gut health and balance. Although specific metabolic pathways have not been detailed, the presence of this microorganism in human fecal matter implies a relationship with dietary fiber and other substrates.↵↵The unique ecological insight that emerges from the presence of Alistipes putredinis is its potential role in gut homeostasis. By participating in anaerobic fermentation and possibly influencing the availability of short-chain fatty acids, this bacterium may contribute to the maintenance of a healthy intestinal environment, underscoring its importance in the study of human microbiome dynamics. Further research could elucidate its specific functions and interactions within the complex microbial community of the gut." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes putredinis negative 445970 ABFK00000000.2 Bac0009905 Thomasclavelia ramosa DSM 1402 "Thomasclavelia ramosa DSM 1402 is a Gram-positive, rod-shaped bacterium known for its anaerobic metabolism and ability to sporulate. This species thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. T. ramosa is versatile in its habitat, being found in multiple environments, although specific ecological niches have not been detailed.↵↵The sporulating capability of T. ramosa suggests an adaptation to survive unfavorable conditions, which may be indicative of its ecological roles in anaerobic environments. The ability to form spores is a significant trait for microbial survival, allowing the organism to endure periods of nutritional deprivation or other stressors. Given its anaerobic nature, T. ramosa likely plays a role in biogeochemical cycles within its habitats, contributing to organic matter decomposition and nutrient recycling.↵↵Further studies may elucidate the specific ecological interactions and contributions of T. ramosa within its environments, particularly in relation to its anaerobic lifestyle and sporulation capabilities. Understanding these dynamics can enhance our knowledge of microbial ecology and the functional roles of anaerobic bacteria in diverse ecosystems." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Thomasclavelia ramosa Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Sporulating 445974 ABFX00000000.2 Bac0009906 [Clostridium] scindens ATCC 35704 "Clostridium scindens ATCC 35704 is a Gram-positive, rod-shaped bacterium that typically occurs in chains or as single cells. This organism is strictly anaerobic, thriving in environments devoid of oxygen, which aligns with its natural habitat found predominantly in fecal matter. ↵↵C. scindens is part of the diverse microbiota that inhabits the gastrointestinal tract of various animals, playing a significant role in the fermentation of dietary fibers and the metabolism of complex carbohydrates. Its anaerobic nature suggests that it contributes to the unique biochemical processes occurring in the gut environment, where oxygen levels are minimal.↵↵The presence of C. scindens in feces indicates its potential involvement in the degradation of organic matter, contributing to nutrient cycling within the ecosystem. Moreover, its ability to coexist with other gut microbes may have implications for gut health and microbial community dynamics. This organism, therefore, represents a crucial component of the anaerobic microbial community in the intestines, underscoring the importance of understanding its role in maintaining gut homeostasis and overall digestive health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium [Clostridium] scindens positive Rod anaerobic mesophilic feces "Chains, Singles" 411468 ABFY00000000.2 Bac0009907 Bacteroides stercoris ATCC 43183 "Bacteroides stercoris ATCC 43183 is a Gram-negative, anaerobic bacterium that is part of the diverse microbiota found in the gastrointestinal tract of mammals. This species is characterized by its ability to thrive in environments devoid of oxygen, which is typical for members of the Bacteroides genus. ↵↵As an anaerobe, B. stercoris plays a crucial role in the fermentation of complex polysaccharides, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are important for gut health and host metabolism. The presence of this bacterium in the gut microbiome can influence various physiological processes, including nutrient absorption and immune system modulation.↵↵Bacteroides species, including B. stercoris, are known for their adaptability to the intestinal environment, where they can interact with other microbial inhabitants and host tissues. The metabolic activities of B. stercoris may also be reflective of its ecological niche, where it contributes to maintaining a balanced microbial community essential for host health. Understanding the specific traits and functions of B. stercoris ATCC 43183 can provide insights into the complex interplay between gut microbes and their host, further underscoring the importance of anaerobic bacteria in human gut ecology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 449673 ABFZ00000000.2 Bac0009908 Anaerotruncus colihominis DSM 17241 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus colihominis 445972 ABGD00000000.2 Bac0009909 Thomasclavelia spiroformis DSM 1552 "Thomasclavelia spiroformis DSM 1552 is a Gram-positive, anaerobic bacterium characterized by its distinct spiral morphology. This microbe thrives in environments devoid of oxygen, suggesting a metabolic adaptation to anaerobic conditions, which is typical for certain members of the clostridial group. The Gram-positive nature of T. spiroformis indicates a thick peptidoglycan layer in its cell wall, a trait that can contribute to its resilience in specific ecological niches.↵↵As an anaerobe, T. spiroformis is likely involved in biochemical processes that occur in environments such as the gastrointestinal tracts of animals or in anaerobic sediments, where oxygen is limited. The unique spiral shape may facilitate motility or colonization in these environments, potentially allowing it to navigate through viscous substrates or biofilms.↵↵Further studies on Thomasclavelia spiroformis could provide insights into its role in nutrient cycling or its interactions with other microbial communities in anaerobic habitats. Given its specific traits, this organism may contribute to the degradation of complex organic materials, highlighting its importance in maintaining ecosystem health and facilitating energy flow in anaerobic systems. Understanding the metabolic pathways and ecological functions of T. spiroformis could enhance our knowledge of microbial diversity and ecosystem dynamics in anaerobic environments." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Thomasclavelia spiroformis Positive Anaerobe 428126 ABIK00000000.2 Bac0009910 Phocaeicola coprocola DSM 17136 "Phocaeicola coprocola DSM 17136 is a Gram-negative, strictly anaerobic bacterium. This organism is notable for its anaerobic metabolic capabilities, which allow it to thrive in environments devoid of oxygen. The Gram-negative classification indicates that P. coprocola possesses a complex cell wall structure characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, a feature that may contribute to its survival in diverse anaerobic habitats.↵↵As an anaerobe, P. coprocola is likely adapted to conditions found in the gastrointestinal tracts of various hosts, where oxygen levels are typically low. This adaptation may facilitate its role in the fermentation processes associated with the breakdown of organic matter, potentially contributing to the complex microbial communities that inhabit such environments. ↵↵The ability of P. coprocola to exist in anaerobic settings might also suggest its involvement in specific biochemical pathways that are vital for nutrient cycling within its ecological niche. Understanding the metabolic processes and interactions of this organism can provide deeper insights into the dynamics of microbial ecosystems, particularly those associated with the digestive systems of animals where it may play a role in maintaining gut health and influencing host-microbe interactions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprocola Negative Anaerobe 470145 ABIY00000000.2 Bac0009911 Providencia stuartii ATCC 25827 "Providencia stuartii ATCC 25827 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic characteristics, allowing it to thrive in diverse environments. This microbe is classified as a chemoheterotroph, indicating that it utilizes organic compounds as its energy and carbon sources, a trait that enhances its adaptability to various habitats. The optimal growth temperature for P. stuartii ATCC 25827 is 37.0°C, which aligns with the temperature found in mammalian hosts, suggesting a potential association with warm-blooded organisms.↵↵The ability of P. stuartii to grow in both aerobic and anaerobic conditions reflects its metabolic versatility, enabling it to occupy a range of ecological niches. This adaptability may facilitate its survival in environments with fluctuating oxygen levels, such as the gastrointestinal tracts of animals or in decomposing organic matter.↵↵Understanding the traits of P. stuartii ATCC 25827 provides insight into its ecological roles and potential interactions within microbial communities. Its chemoheterotrophic metabolism allows it to participate in nutrient cycling, particularly in environments where organic substrates are available. Additionally, the ability to thrive at body temperature may indicate its role in interactions with host organisms, potentially influencing microbial dynamics in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia stuartii Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 471874 ABJD00000000.2 Bac0009912 Streptomyces sp. SPB074 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SPB074 465543 ABJG00000000.2 Bac0009913 Borreliella finlandensis strain SV1 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella [Borrelia] finlandensis 498741 ABJZ00000000.2 Bac0009914 Escherichia albertii TW07627 "Escherichia albertii TW07627 is a Gram-negative bacterium characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. As a member of the Enterobacteriaceae family, E. albertii is related to other well-known Escherichia species, yet it possesses distinct genetic and phenotypic traits that differentiate it from more commonly studied strains such as Escherichia coli.↵↵The facultative anaerobic nature of E. albertii TW07627 suggests a versatile metabolic capacity, enabling it to adapt to varying oxygen levels, which may facilitate its survival in diverse environments, including those with fluctuating nutrient availability. This adaptability is particularly crucial for its potential interactions within various ecological niches, where competition with other microorganisms for resources occurs.↵↵Understanding the metabolic pathways and environmental tolerances of E. albertii TW07627 can provide insights into its ecological roles, particularly in environments where oxygen levels are inconsistent. The ability to utilize different metabolic strategies may allow E. albertii to occupy specific niches, potentially influencing microbial community dynamics and nutrient cycling. Further research into the ecological implications of this strain's metabolic versatility could enhance our comprehension of its role in natural and anthropogenic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia albertii Negative Facultative anaerobe 502347 ABKX00000000.1 Bac0009915 Burkholderia ambifaria IOP40-10 "Burkholderia ambifaria IOP40-10 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic respiration, allowing it to thrive in a variety of environments with differing oxygen levels. This strain does not undergo sporulation, which may influence its survival strategies in fluctuating habitats. The optimal growth temperature for B. ambifaria IOP40-10 is approximately 30.0°C, suggesting a preference for mesophilic conditions that are commonly found in diverse ecological niches.↵↵As a member of the Burkholderia genus, this strain is likely to inhabit multiple environments, which may include soil, water, and plant-associated ecosystems. The adaptability of B. ambifaria IOP40-10 to various habitats underscores its potential role in biogeochemical cycles and interactions with other microbial communities. Furthermore, the facultative aerobic nature of this bacterium may allow it to play a significant role in nutrient cycling, particularly in environments where oxygen availability fluctuates.↵↵The ability of B. ambifaria IOP40-10 to survive and grow in diverse habitats while maintaining a nonsporulating lifestyle raises intriguing questions about its ecological interactions and potential applications in bioremediation or agriculture, where its metabolic versatility could be harnessed to promote soil health or degrade pollutants. Overall, this strain exemplifies the complex ecological dynamics of the Burkholderia genus and its potential contributions to microbial diversity and ecosystem function." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria Negative Rod No 1 2 Facultative aerobe 30 Mesophilic Multiple Free living Nonsporulating 396596 ABLC00000000.1 Bac0009916 Paraburkholderia graminis C4D1M Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia graminis aerobic 396598 ABLD00000000.1 Bac0009917 [Ruminococcus] lactaris ATCC 29176 "[Ruminococcus] lactaris ATCC 29176 is a Gram-positive cocci bacterium characterized by its spherical shape. This microbe is part of the diverse group of anaerobic bacteria commonly found in the gastrointestinal tracts of ruminant animals, where it plays a critical role in the fermentation of plant materials. Its ability to thrive in anaerobic environments suggests that it contributes to the complex microbial ecosystems that facilitate the digestion of fibrous substances, ultimately aiding in nutrient absorption in its hosts.↵↵The unique structure of [Ruminococcus] lactaris, as a Gram-positive organism, indicates a thick peptidoglycan layer in its cell wall, which is typical of members within its genus. This structural feature may confer certain advantages in its ecological niche, such as resilience against environmental stresses encountered in the digestive tract.↵↵Research on [Ruminococcus] lactaris ATCC 29176 could provide valuable insights into its metabolic capabilities and interactions with other gut microbiota, particularly in the context of fiber degradation and short-chain fatty acid production. These metabolic by-products are essential for the health of ruminants, suggesting that [Ruminococcus] lactaris may play a significant role in the overall efficiency of digestion and energy extraction from plant-based diets. Understanding its function could enhance knowledge of microbial contributions to ruminant nutrition and health, which is crucial for optimizing livestock management and production systems." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter [Ruminococcus] lactaris Positive Cocci 471875 ABOU00000000.2 Bac0009918 Bifidobacterium bifidum NCIMB 41171 "Bifidobacterium bifidum NCIMB 41171 is a Gram-positive, non-sporulating, rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. This species is part of the normal gut microbiota in humans, where it plays a significant role in maintaining intestinal health and supporting the immune system. The anaerobic nature of B. bifidum indicates its adaptation to environments devoid of oxygen, which is characteristic of the gut where it resides.↵↵As a member of the Bifidobacterium genus, B. bifidum is known for its ability to ferment carbohydrates, producing beneficial metabolites such as short-chain fatty acids that can contribute to gut health. While specific ecological interactions of strain NCIMB 41171 are not detailed, it is understood that bifidobacteria, including this strain, can positively influence the gut microbiome by inhibiting the growth of pathogenic bacteria and enhancing the intestinal barrier function.↵↵The association of B. bifidum NCIMB 41171 with host organisms highlights its potential importance in symbiotic relationships, suggesting that it may play a role in nutrient absorption and overall homeostasis. Understanding the traits and functions of this microbe can provide valuable insights into its contributions to gut health and its potential applications in probiotics and therapeutic interventions." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 398513 ABQP00000000.1 Bac0009919 Verrucomicrobiia bacterium DG1235 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiia bacterium DG1235 382464 ABSI00000000.1 Bac0009920 Helicobacter pylori 98-10 "Helicobacter pylori 98-10 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single cell arrangement. This strain thrives at an optimal temperature of 37.0°C, reflecting its adaptation to the human gastric environment, where it is predominantly found in association with host tissues. ↵↵H. pylori is well-known for its unique ability to survive in the acidic conditions of the stomach, which allows it to colonize the gastric mucosa. The microaerophilic nature of this strain indicates that it requires reduced oxygen levels for optimal growth, a trait that is crucial for its survival in the host's stomach, where oxygen concentrations are low. ↵↵The habitat of H. pylori 98-10 being host-associated suggests a specialized ecological niche, likely interacting closely with the host's immune system and gastric environment. This relationship may influence not only the bacterium's survival but also the host's physiological responses, potentially affecting gastric health. Understanding the specific traits of H. pylori 98-10 contributes to the broader knowledge of microbial adaptation in extreme environments, illuminating the complexities of host-microbe interactions in the human gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 544405 ABSX00000000.1 Bac0009921 Dethiosulfovibrio peptidovorans DSM 11002 Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio Dethiosulfovibrio peptidovorans 469381 ABTR00000000.2 Bac0009922 Mitsuokella multacida DSM 20544 "Mitsuokella multacida DSM 20544 is a Gram-negative, anaerobic bacterium characterized by its inability to thrive in the presence of oxygen. This species is part of the diverse microbial community and contributes to various anaerobic environments. Its Gram-negative status suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may influence its interactions with other microorganisms in its habitat.↵↵As an anaerobe, Mitsuokella multacida relies on fermentation or anaerobic respiration for energy production, utilizing substrates that are not dependent on oxygen. This anaerobic lifestyle positions it within ecosystems where oxygen levels are low or absent, such as in the gastrointestinal tracts of animals or in certain environmental niches like sediments or deep soils. ↵↵The metabolic pathways employed by Mitsuokella multacida may allow it to play a role in the degradation of organic matter, contributing to nutrient cycling within its ecosystem. Its presence in anaerobic environments highlights the importance of such bacteria in maintaining ecological balance and facilitating biochemical processes that would otherwise be limited by the absence of oxygen. Understanding the traits and ecological roles of Mitsuokella multacida could provide insights into the functional dynamics of anaerobic microbial communities." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Mitsuokella Mitsuokella multacida Negative Anaerobe 500635 ABWK00000000.2 Bac0009923 Citrobacter youngae ATCC 29220 "Citrobacter youngae ATCC 29220 is a Gram-negative bacterium that belongs to the genus Citrobacter, which is known for its diverse metabolic capabilities and environmental adaptability. This microbe exhibits typical characteristics of the Enterobacteriaceae family, including rod-shaped morphology and motility due to the presence of flagella. As a member of the Citrobacter genus, C. youngae is likely to possess the ability to utilize a variety of carbon sources, an attribute that enhances its survival in diverse environments. ↵↵While specific pathogenicity data for C. youngae ATCC 29220 are not provided, species within the Citrobacter genus have been implicated in opportunistic infections, highlighting the importance of understanding their metabolic pathways and environmental distributions. The bacterium's Gram-negative cell wall structure, characterized by an outer membrane containing lipopolysaccharides, is crucial for its interactions with the environment and potential host organisms.↵↵C. youngae ATCC 29220 may be found in a variety of habitats, including soil and water, where it plays a role in nutrient cycling. Its metabolic versatility suggests that it could contribute to the degradation of organic compounds, thus influencing the ecological dynamics of its environment. Understanding the traits of C. youngae ATCC 29220 can enhance our knowledge of microbial ecology and the functional roles of Gram-negative bacteria in environmental systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter youngae negative 500640 ABWL00000000.2 Bac0009924 Eshraghiella crossota DSM 2876 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eshraghiella Eshraghiella crossota 511680 ABWN00000000.1 Bac0009925 [Clostridium] nexile DSM 1787 "Clostridium nexile DSM 1787 is a rod-shaped, sporulating bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This microbe is notable for its ability to occupy multiple habitats, indicating a versatile ecological adaptability. As a member of the genus Clostridium, C. nexile is characterized by its capacity to form endospores, allowing it to withstand adverse conditions and potentially contributing to its survival in varied environments. ↵↵The anaerobic nature of C. nexile suggests that it plays a role in environments devoid of oxygen, such as in certain soil types or the gastrointestinal tracts of animals. As a chemoheterotroph, it derives energy from organic compounds, which may implicate it in the degradation of complex organic materials. Understanding the metabolic capabilities and ecological roles of C. nexile can provide insights into its potential applications in bioremediation or as a model organism for studies on anaerobic microbial processes.↵↵Overall, the ecological versatility and anaerobic lifestyle of Clostridium nexile DSM 1787 highlight its importance in nutrient cycling and its potential contributions to the dynamics of microbial communities in diverse anaerobic habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalimonas Faecalimonas nexilis Rod No 1 Anaerobic Chemoheterotroph Multiple Sporulating 500632 ABWO00000000.1 Bac0009926 Phocaeicola dorei DSM 17855 "Phocaeicola dorei DSM 17855 is a Gram-negative, nonsporulating rod-shaped bacterium that demonstrates anaerobic metabolic capabilities and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, P. dorei derives its energy from organic compounds, suggesting a reliance on complex organic substrates for growth and metabolism. This organism has been isolated from diverse habitats, indicating its potential adaptability to various environmental conditions. ↵↵The anaerobic nature of P. dorei suggests that it is well-suited to environments where oxygen is limited, which is often the case in certain human-associated microbiomes, particularly the gastrointestinal tract. The ability to thrive under these conditions may play a role in its ecological interactions within these niches, potentially influencing microbial community dynamics and host-microbe interactions. ↵↵Given its metabolic characteristics and habitat diversity, P. dorei may contribute to the breakdown of complex organic matter in anaerobic environments, which can be an essential process in nutrient cycling. This functional role could provide insights into its ecological significance, particularly in maintaining microbial diversity and stability within anaerobic ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 483217 ABWZ00000000.1 Bac0009927 Bifidobacterium gallicum DSM 20093 = LMG 11596 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium gallicum anaerobic 561180 ABXB00000000.3 Bac0009928 Rhodobacteraceae bacterium HTCC2083 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium HTCC2083 314270 ABXE00000000.1 Bac0009929 Marine gamma proteobacterium HTCC2148 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae marine gamma proteobacterium HTCC2148 247634 ABXQ00000000.1 Bac0009930 Roseobacter sp. GAI101 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseobacter Roseobacter sp. GAI101 391589 ABXS00000000.1 Bac0009931 Methylophaga thiooxydans DMS010 "Methylophaga thiooxydans DMS010 is a Gram-negative, nonsporulating microbe that thrives in marine environments, exhibiting chemolithotrophic metabolism. This organism optimally grows at a temperature of 30.0°C and requires oxygen for its energy-generating processes, indicating its aerobic nature. As a chemolithotroph, Methylophaga thiooxydans DMS010 is capable of deriving energy from inorganic compounds, which plays a critical role in the biogeochemical cycling of elements within its marine habitat.↵↵The ability of Methylophaga thiooxydans DMS010 to utilize inorganic substrates could suggest its potential involvement in the degradation of pollutants or organic matter in marine ecosystems, thereby contributing to nutrient cycling and the maintenance of ecological balance. Such metabolic capabilities may also position this microbe as a key player in the adaptation and resilience of microbial communities in nutrient-limited marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga thiooxydans Negative No 1 Aerobic 30 Chemolithotroph Mesophilic Marine Nonsporulating 637616 ABXT00000000.1 Bac0009932 Desulfovibrio piger ATCC 29098 "Desulfovibrio piger ATCC 29098 is a Gram-negative bacterium characterized by its anaerobic metabolism and ability to reduce sulfate to sulfide. This species is part of the Desulfovibrio genus, which is known for its role in the sulfur cycle, particularly in anoxic environments. As a member of the sulfate-reducing bacteria (SRB), D. piger utilizes sulfate as a terminal electron acceptor, contributing to the biogeochemical processes in sediments and other anaerobic habitats.↵↵The Gram-negative nature of D. piger indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this bacterial group. This structural characteristic plays a role in its resilience in various environments, particularly those rich in organic matter and low in oxygen. ↵↵The metabolic activities of D. piger are significant in bioremediation and the cycling of sulfur in ecosystems, where they help in the degradation of organic compounds and the transformation of sulfur species. Their ability to thrive in anaerobic conditions allows them to occupy ecological niches that are inhospitable to many other microorganisms.↵↵Overall, Desulfovibrio piger ATCC 29098 exemplifies the complex interactions within microbial communities, particularly in sedimentary environments, where it plays a crucial role in nutrient cycling and maintaining the balance of sulfur compounds. Understanding the metabolic pathways and ecological impacts of this organism can provide insights into microbial ecology and the functioning of anaerobic ecosystems." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger negative 411464 ABXU00000000.1 Bac0009933 Providencia alcalifaciens DSM 30120 "Providencia alcalifaciens DSM 30120 is a Gram-negative, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This microbe thrives at an optimal temperature of 37.0°C, which aligns with the physiological conditions typically found within the intestinal microflora of animals. As a facultative anaerobe, P. alcalifaciens is capable of growth in both aerobic and anaerobic environments, allowing it to adapt to the fluctuating oxygen levels present in the intestinal tract.↵↵The ecological role of P. alcalifaciens within the animal gut is significant, as it contributes to the complex microbiota that aids in digestion and nutrient absorption. It may also play a role in maintaining gut health by competing with pathogenic organisms and contributing to the overall balance of gut microbiota. Understanding the traits of P. alcalifaciens can provide insights into its potential interactions within the host's intestinal ecosystem, highlighting its importance in the context of gastrointestinal microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia alcalifaciens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 520999 ABXW00000000.1 Bac0009934 Streptomyces viridosporus ATCC 14672 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces viridosporus aerobic 29 mesophilic spore-forming 566461 ABYA00000000.1 Bac0009935 Streptomyces filamentosus NRRL 15998 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces filamentosus 457431 ABYB00000000.1 Bac0009936 Parabacteroides johnsonii DSM 18315 "Parabacteroides johnsonii DSM 18315 is a Gram-negative bacterium characterized by its distinct morphological and biochemical traits. This species belongs to the genus Parabacteroides, which encompasses various anaerobic bacteria commonly found in the gastrointestinal tract of mammals. As a member of the gut microbiota, P. johnsonii plays a role in the fermentation of complex carbohydrates, contributing to the overall metabolic processes of the host.↵↵The Gram-negative nature of P. johnsonii indicates a specific structural composition of its cell wall, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is significant, as it influences not only the bacterium's interaction with its environment but also its response to antibiotics and other antimicrobial agents.↵↵While specific metabolic capabilities and ecological roles of P. johnsonii remain to be fully elucidated, its presence in the gut microbiome suggests potential implications for host health and digestion. The bacterium may participate in the modulation of gut health by aiding in the breakdown of dietary fibers and influencing the overall composition of the microbial community. Further research is necessary to explore the functional roles of P. johnsonii in the gut and its interactions with other microbiota, which may reveal insights into its contributions to host metabolism and immune function." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides johnsonii negative 537006 ABYH00000000.1 Bac0009937 [Clostridium] hylemonae DSM 15053 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium [Clostridium] hylemonae 553973 ABYI00000000.2 Bac0009938 Roseburia intestinalis L1-82 "Roseburia intestinalis L1-82 is a Gram-positive, rod-shaped bacterium that plays a significant role as a nonsporulating anaerobe within the intestinal microflora of animals. This microbe is a chemoheterotroph, utilizing organic compounds as an energy source, which is characteristic of many gut bacteria that contribute to the complex biochemical processes occurring in the gastrointestinal tract.↵↵Optimally thriving at a temperature of 37.0°C, R. intestinalis L1-82 is well-suited for its habitat, where it participates in the fermentation of dietary fibers and other substrates. Its anaerobic nature implies that it does not require oxygen for growth, further emphasizing its adaptation to the anoxic conditions prevalent in the intestinal environment.↵↵The presence of R. intestinalis L1-82 in animal intestines suggests its potential role in maintaining gut health and contributing to the overall balance of the microbial community. The interplay between this bacterium and other gut microbiota may influence nutrient absorption, metabolic processes, and immune system modulation. Understanding the functional contributions of R. intestinalis L1-82 could provide insights into the intricate dynamics of the gut microbiome and its implications for host health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia intestinalis Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 536231 ABYJ00000000.2 Bac0009939 Limnospira maxima CS-328 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Sirenicapillariaceae Limnospira Limnospira maxima 513049 ABYK00000000.1 Bac0009940 Acinetobacter sp. ATCC 27244 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ATCC 27244 525244 ABYN00000000.1 Bac0009941 Bifidobacterium angulatum DSM 20098 = JCM 7096 strain DSM 20098 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium angulatum anaerobic 1683 ABYS00000000.2 Bac0009942 Holdemanella biformis DSM 3989 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemanella Holdemanella biformis 518637 ABYT00000000.1 Bac0009943 Blautia hansenii DSM 20583 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia hansenii anaerobic 537007 ABYU00000000.2 Bac0009944 Methanobrevibacter smithii DSM 2375 "Methanobrevibacter smithii DSM 2375 is a Gram-positive, rod-shaped archaeon that typically arranges itself in pairs or chains. This organism thrives as a strict anaerobe, indicating that it does not require oxygen for growth and is likely to inhabit environments where oxygen is absent. Optimal growth occurs at 37.0°C, suggesting an adaptation to the human body temperature, which may align with its presence in various human-associated habitats.↵↵As a lithotroph, M. smithii derives energy from inorganic compounds, contributing to its role in biogeochemical cycles, particularly in methanogenesis. Its metabolic processes are integral to the degradation of organic matter in anaerobic environments, reflecting its ecological significance in both gastrointestinal ecosystems and other anaerobic niches. ↵↵The presence of M. smithii in the human gut microbiome highlights its potential role in influencing host metabolism, particularly in relation to energy harvest from indigestible carbohydrates. This organism may also be involved in the production of methane, a byproduct of its metabolic activity, which can have implications for both human health and environmental processes. The adaptability of M. smithii to various anaerobic habitats underscores its importance within microbial communities, particularly in the context of nutrient cycling and energy flow in anaerobic ecosystems." Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii Positive Rod No 1 Anaerobe 37 Lithotroph Mesophilic Multiple Free living Pairs - Chains 483214 ABYW00000000.1 Bac0009945 Corynebacterium amycolatum SK46 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium amycolatum microaerophile 29 mesophilic 553204 ABZU00000000.1 Bac0009946 Escherichia coli str. K-12 substr. W3110 "Escherichia coli str. K-12 substr. W3110 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is optimized for growth at 37.0°C, which corresponds to the average internal temperature of warm-blooded hosts. As a facultative anaerobe, E. coli K-12 W3110 can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels within its host-associated habitats.↵↵This strain is well-established in laboratory settings, serving as a model organism in molecular biology and genetics research. The ability of E. coli K-12 W3110 to utilize different metabolic pathways under varying oxygen conditions reflects its versatility and potential for survival in diverse environments. The adaptation mechanisms of this strain may provide insights into the broader ecological roles of E. coli in host-associated environments, particularly regarding its interactions with the host microbiome and its contributions to nutrient cycling.↵↵Notably, the facultative anaerobic nature of E. coli K-12 W3110 suggests that it can play a significant role in fermentative processes within the gastrointestinal tract of its hosts, where it may influence the fermentation of carbohydrates and the production of short-chain fatty acids. This metabolic flexibility underscores its importance in maintaining gut homeostasis and highlights the intricate relationships between microbes and their host environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 316407 AC_000091.1 Bac0009947 Enterococcus faecalis CH188 "Enterococcus faecalis CH188 is a Gram-positive cocci that thrives at an optimal temperature of 37.0°C and adopts a facultative anaerobic lifestyle, allowing it to grow in both the presence and absence of oxygen. This organism is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which can be found in various habitats. The broad habitat range of E. faecalis CH188 suggests a versatile ecological adaptability, enabling it to inhabit diverse environments, including human-associated niches.↵↵This organism's ability to function as a facultative anaerobe and utilize organic substrates may contribute to its ecological resilience in fluctuating conditions. Furthermore, the adaptability to different oxygen levels can facilitate its survival in various environments, from soil and water to more complex biological systems. Understanding the traits of E. faecalis CH188 not only underscores its metabolic flexibility but also highlights its potential roles in microbial communities, where it may interact with other microorganisms and contribute to nutrient cycling." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 565644 ACAV00000000.1 Bac0009948 Enterococcus faecium Com15 "Enterococcus faecium Com15 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This species, part of the Enterococcus genus, exhibits the ability to thrive in both aerobic and anaerobic environments, which allows it to adapt to various ecological niches. The Gram-positive nature of E. faecium Com15 indicates a thick peptidoglycan layer in its cell wall, a feature that is typical of many lactic acid bacteria and contributes to its resilience in diverse environments.↵↵E. faecium is commonly found in the gastrointestinal tracts of humans and other animals, where it plays a role in maintaining gut health. Its facultative anaerobic capability suggests that it can utilize different metabolic pathways depending on the availability of oxygen, potentially influencing its interactions with other microbial species in its habitat. This adaptability may also enhance its survival in various environmental conditions, including those encountered during food processing and preservation.↵↵An intriguing aspect of E. faecium Com15 is its potential contribution to biotechnological applications, such as fermentation processes in food production. The organism's ability to thrive under varying oxygen conditions may make it a valuable candidate for developing probiotic formulations or in the production of fermented foods, highlighting its importance not only in health but also in food microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 565663 ACBD00000000.1 Bac0009949 Phocaeicola coprophilus DSM 18228 = JCM 13818 strain DSM 18228 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprophilus 387090 ACBW00000000.1 Bac0009950 Segatella copri DSM 18205 "Segatella copri DSM 18205 is a Gram-negative, anaerobic bacterium that has garnered interest for its unique metabolic properties. As an anaerobe, S. copri thrives in environments devoid of oxygen, utilizing fermentation pathways to generate energy. The Gram-negative classification indicates a distinctive cell wall structure, which consists of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a feature that can influence its interactions with other microorganisms and the host environment.↵↵The specific ecological niches inhabited by S. copri remain to be fully elucidated; however, its anaerobic nature suggests a preference for environments such as the gastrointestinal tract, where oxygen levels are low, and fermentation is a primary metabolic mode. Such habitats may provide S. copri with access to a diverse array of substrates for metabolism.↵↵The presence of S. copri in mixed microbial communities may play a role in the complex interactions within anaerobic ecosystems. Its capacity to engage in fermentation could contribute to the overall metabolic diversity of these communities, potentially influencing nutrient cycling and microbial dynamics. Moreover, the understanding of S. copri's role in anaerobic environments may shed light on the broader ecological functions of Gram-negative anaerobes in various biomes, particularly within the human microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe 537011 ACBX00000000.2 Bac0009951 Holdemania filiformis DSM 12042 "Holdemania filiformis DSM 12042 is a Gram-positive, anaerobic bacterium characterized by its filamentous morphology. This microbe is part of the diverse microbial community often associated with anaerobic environments, where it thrives without the presence of oxygen. The Gram-positive nature of H. filiformis indicates that it possesses a thick peptidoglycan layer in its cell wall, which is a common feature of many bacteria in this group, contributing to its structural integrity and resilience in varying conditions.↵↵As an anaerobe, H. filiformis engages in fermentation or utilizes alternative electron acceptors for energy production, allowing it to inhabit niches that are devoid of oxygen. This metabolic capability is essential for its survival and growth in specific ecological contexts, such as within sediment layers or the gastrointestinal tracts of certain organisms. ↵↵The filamentous form of H. filiformis may provide advantages in nutrient acquisition and biofilm formation, enabling it to establish itself in competitive microbial communities. Understanding the growth dynamics and interactions of H. filiformis within its natural habitat could shed light on the roles of filamentous anaerobes in nutrient cycling and microbiome stability. Further research into its physiological properties and ecological interactions may reveal significant insights into the functions of anaerobic microorganisms in their respective ecosystems." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemania Holdemania filiformis Positive Anaerobe 545696 ACCF00000000.1 Bac0009952 Providencia rettgeri DSM 1131 "Providencia rettgeri DSM 1131 is a Gram-negative, nonsporulating rod-shaped bacterium that optimally grows at 37.0°C. As a chemoheterotroph, it derives its energy from organic compounds, reflecting its adaptability to various nutrient sources. This species is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which enhances its ecological versatility. ↵↵Providencia rettgeri is known to inhabit a range of environments, suggesting that it can occupy multiple ecological niches. This adaptability may contribute to its survival in diverse habitats, including those rich in organic matter where it can utilize various substrates for growth. The ability to function in the presence or absence of oxygen further supports its potential to colonize different ecological zones.↵↵The physiological characteristics of P. rettgeri, particularly its metabolic flexibility and temperature preference, may play a significant role in its interactions within microbial communities, particularly in environments where nutrient availability fluctuates. Understanding these traits can provide insights into the ecological roles that P. rettgeri may fulfill, including its potential contributions to nutrient cycling in its native habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 521000 ACCI00000000.2 Bac0009953 [Clostridium] asparagiforme DSM 15981 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster asparagiformis 518636 ACCJ00000000.1 Bac0009954 Marvinbryantia formatexigens DSM 14469 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Marvinbryantia Marvinbryantia formatexigens anaerobic 478749 ACCL00000000.2 Bac0009955 Luminiphilus syltensis NOR5-1B Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Luminiphilus Luminiphilus syltensis 565045 ACCY00000000.1 Bac0009956 Phocaeicola dorei 5_1_36/D4 "Phocaeicola dorei 5_1_36/D4 is a Gram-negative, rod-shaped bacterium that exhibits nonsporulating characteristics and thrives optimally at 37.0°C. This organism is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and growth. As an anaerobe, P. dorei 5_1_36/D4 requires environments devoid of oxygen, suggesting a lifestyle adapted to conditions where aerobic respiration cannot occur.↵↵The presence of this microbe in multiple habitats highlights its ecological versatility, although specific environments have not been delineated. The ability to metabolize various organic substrates allows P. dorei 5_1_36/D4 to occupy diverse ecological niches, potentially contributing to the microbial community dynamics in these habitats. The nonsporulating nature of this bacterium may imply a reliance on stable environmental conditions for survival, as it does not produce spores as a means of enduring adverse conditions.↵↵Given its anaerobic metabolism and chemoheterotrophic lifestyle, P. dorei 5_1_36/D4 may play a role in the degradation of organic matter in anaerobic environments, potentially facilitating nutrient cycling. Its adaptability to various habitats could also hint at a broader ecological role in maintaining microbial diversity in anaerobic ecosystems. Further study of this organism could yield insights into its specific contributions to microbial community structure and function in these environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 556260 ACDI00000000.2 Bac0009957 Escherichia coli D9 "Escherichia coli D9 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singly. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli D9 can metabolize in both aerobic and anaerobic environments, allowing it to survive in varied conditions within the host.↵↵The ability to inhabit host-associated environments suggests that E. coli D9 may play a role in the gut microbiota, contributing to processes such as nutrient absorption or fermentation. Its flexible oxygen requirement enhances its survival in diverse niches within the gastrointestinal tract, where oxygen levels can fluctuate. The pairing and single arrangement of cells may also suggest a potential for cooperative behavior or communication between cells, which could be significant in a competitive microbial ecosystem.↵↵Understanding the traits of Escherichia coli D9 provides insights into its potential interactions within host organisms and the broader implications for microbial ecology in gut environments. Further research could elucidate its specific functions and contributions to host health or microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 556266 ACDL00000000.1 Bac0009958 Oxalobacter paraformigenes strain HOxBLS "Oxalobacter paraformigenes strain HOxBLS is a Gram-negative bacterium recognized for its unique metabolic capabilities, particularly in the degradation of oxalate. This microorganism plays a significant role in the biogeochemical cycling of organic acids, contributing to the breakdown of oxalic acid, which is a common compound found in various plant materials. ↵↵Characteristically, Gram-negative bacteria like O. paraformigenes possess a thin peptidoglycan layer surrounded by an outer membrane, which typically contains lipopolysaccharides. This structural feature is essential for the bacterium's interaction with its environment, influencing its resistance to certain antibiotics and its ability to interact with host organisms or other microbial communities.↵↵Strain HOxBLS has been studied for its potential applications in bioremediation and environmental microbiology, particularly in contexts where oxalate accumulation is problematic. By effectively utilizing oxalate as a carbon source, O. paraformigenes could contribute to reducing oxalate concentrations in various ecosystems, thus mitigating potential negative impacts associated with oxalate accumulation, such as mineral precipitation.↵↵The ecological significance of O. paraformigenes strain HOxBLS lies in its potential to facilitate nutrient recycling within its environment, which may enhance soil health and promote plant growth by converting oxalate into more accessible forms of carbon and energy for other microorganisms and plants. This trait underscores the importance of microbial communities in maintaining ecological balance and highlights the intricate interdependencies within soil ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Oxalobacter Oxalobacter paraformigenes negative 556268 ACDP00000000.2 Bac0009959 Prochlorococcus marinus str. MIT 9202 "Prochlorococcus marinus strain MIT 9202 is a Gram-negative, coccoid cyanobacterium that thrives in aquatic environments. This microbe is recognized for its photosynthetic capabilities, utilizing light energy to drive its metabolic processes. As one of the smallest known photosynthetic organisms, Prochlorococcus plays a significant role in marine ecosystems, contributing to primary production and influencing nutrient cycles.↵↵The cellular structure of Prochlorococcus marinus str. MIT 9202 is characterized by its compact morphology, which aids in its survival and efficiency in light capture, particularly in oligotrophic waters where nutrient availability is limited. Its Gram-negative cell wall structure suggests a protective outer membrane that may contribute to its adaptability in varying aquatic conditions.↵↵Prochlorococcus species, including strain MIT 9202, are known to dominate phytoplankton communities in certain oceanic regions, particularly in warm, nutrient-poor waters. This dominance indicates a specialized adaptation to low light and nutrient levels, allowing it to flourish where many other phytoplankton species cannot. ↵↵The ecological significance of Prochlorococcus marinus str. MIT 9202 lies in its contribution to the global carbon cycle and oxygen production; it is estimated to be responsible for a substantial portion of the ocean's photosynthetic activity. This highlights the potential impact of environmental changes on its population dynamics, which may have cascading effects on marine food webs and biogeochemical processes." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 93058 ACDW00000000.1 Bac0009960 Eikenella corrodens ATCC 23834 "Eikenella corrodens ATCC 23834 is a Gram-negative, facultative anaerobic bacterium characterized by its ability to thrive in both aerobic and anaerobic environments. This species is part of the normal flora of the human oral cavity and gastrointestinal tract, suggesting its role in maintaining microbial homeostasis within these habitats. The facultative anaerobic nature of E. corrodens allows it to adapt to varying oxygen levels, potentially contributing to its survival and growth in diverse environments, including those encountered during human infections. ↵↵Eikenella corrodens is typically associated with human bites and certain types of periodontal diseases, indicating its opportunistic nature under specific conditions. Its metabolic versatility may facilitate its survival in the dynamic and often competitive microbial environments of the oral cavity, where it can engage in complex interactions with other microbial species. ↵↵Interestingly, the presence of Eikenella corrodens in human-associated niches underscores its potential as a marker for the microbial dynamics of the oral and gastrointestinal microbiomes. Its ability to thrive in both oxygen-rich and hypoxic conditions may offer insights into microbial resilience and adaptation strategies in response to environmental stressors, contributing to our understanding of microbial ecology in human health and disease contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella corrodens Negative Facultative anaerobe 546274 ACEA00000000.1 Bac0009961 Corynebacterium matruchotii ATCC 33806 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii 566549 ACEB00000000.1 Bac0009962 [Clostridium] methylpentosum DSM 5476 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae [Clostridium] methylpentosum 537013 ACEC00000000.1 Bac0009963 Neisseria flavescens NRL30031/H210 "Neisseria flavescens NRL30031/H210 is a Gram-negative, aerobic bacterium characterized by its distinct cellular morphology and growth requirements. As a member of the genus Neisseria, this species exhibits typical features of the group, including a diplococcal shape, which is often observed in pairs. The aerobic nature of N. flavescens NRL30031/H210 indicates that it requires oxygen for its metabolic processes, suggesting adaptations that facilitate survival in oxygen-rich environments.↵↵The Gram-negative classification of this strain reflects the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interaction with the surrounding environment. Such structural characteristics could also influence its susceptibility to various antimicrobial agents, although specific resistance profiles for N. flavescens NRL30031/H210 remain to be elucidated.↵↵In terms of ecological significance, N. flavescens, like other members of the Neisseria genus, may be involved in microbial communities where oxygen levels vary, potentially contributing to nutrient cycling or influencing the dynamics of other microbial populations. Its adaptability to aerobic conditions could enable it to thrive in environments such as mucosal surfaces or other oxygenated habitats, where it may play a role in maintaining microbial diversity and stability. Further research is warranted to explore the interactions and ecological roles of this strain within its natural environment." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria flavescens Negative Aerobe 546264 ACEN00000000.1 Bac0009964 Neisseria subflava NJ9703 "Neisseria subflava NJ9703 is a Gram-negative bacterium characterized by its unique morphological and physiological traits. As a member of the Neisseria genus, this microbe displays the typical features associated with Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. ↵↵The classification of N. subflava into the Neisseria genus suggests its potential involvement in various microbial communities, particularly in environments where other Neisseria species are present. While the specific ecological role and habitat of N. subflava NJ9703 have not been definitively characterized, it is known that members of this genus are often associated with mucosal surfaces and can inhabit the human microbiome, particularly in the oral cavity and respiratory tract.↵↵Given the traits available, it can also be speculated that N. subflava NJ9703 may interact with both host organisms and other microbial species, potentially influencing local microbial dynamics. Its Gram-negative nature could suggest resilience to certain environmental stresses, such as exposure to antimicrobial agents, which is a characteristic often observed in related species. As such, further exploration into the ecological interactions and potential roles of N. subflava NJ9703 may yield insights into its contributions to microbial diversity and community structure in niche environments." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria subflava negative 546268 ACEO00000000.2 Bac0009965 Neisseria lactamica ATCC 23970 "Neisseria lactamica ATCC 23970 is a Gram-negative, nonsporulating coccus that thrives in various habitats, with an optimal growth temperature of 35.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, which enables it to adapt to diverse environments where such substrates are available. ↵↵This species is part of a genus known for its association with the human microbiota, particularly in the upper respiratory tract, where it may coexist with other Neisseria species. Although N. lactamica is not widely characterized for pathogenic traits, its close relationship with Neisseria meningitidis and Neisseria gonorrhoeae suggests a potential role in microbial ecology and interactions within the human host.↵↵Understanding the ecological niche of N. lactamica can provide insights into its role in maintaining microbial diversity and stability in the respiratory microbiome. Its ability to inhabit multiple environments highlights the importance of nonpathogenic Neisseria species in the overall health of microbial communities. Further studies on N. lactamica may reveal its contributions to microbial interactions and its potential influence on the dynamics of pathogenic Neisseria species." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria lactamica Negative Cocci No 1 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 546265 ACEQ00000000.2 Bac0009966 Streptomyces sp. AA4 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AA4 591158 ACEV00000000.1 Bac0009967 Streptomyces sp. C Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. C 253839 ACEW00000000.1 Bac0009968 Campylobacter rectus RM3267 "Campylobacter rectus RM3267 is a Gram-negative bacterium belonging to the genus Campylobacter. This organism is characterized by its helical shape and motility, which are typical of members of this genus. Campylobacter rectus RM3267 is part of the diverse microbiota found in various environments, including those associated with animal hosts and potentially human-associated habitats.↵↵As a Gram-negative microbe, C. rectus RM3267 possesses an outer membrane containing lipopolysaccharides, which may contribute to its interactions with the host environment. The unique structural features of its cell envelope could be relevant for its survival and adaptability in different ecological niches. Campylobacter species, including C. rectus, are known to inhabit the gastrointestinal tracts of birds and mammals, which may suggest a role in nutrient cycling and microbial community dynamics.↵↵Further research into Campylobacter rectus RM3267 could provide insights into its specific ecological roles, interactions with other microorganisms, and potential contributions to the health of the microbiome in its native habitats. Understanding the traits and behaviors of C. rectus RM3267 may ultimately shed light on the broader ecological functions of Campylobacter species within complex microbial ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus negative 553218 ACFU00000000.1 Bac0009969 Bacteroides sp. D2 "Bacteroides sp. D2 is a Gram-negative bacterium that plays a significant role in the microbiota of various environments. Members of the Bacteroides genus are typically anaerobic, thriving in oxygen-depleted conditions, which is consistent with the ecological niches they occupy, primarily in the gastrointestinal tracts of mammals. These bacteria are known for their ability to metabolize complex carbohydrates, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health.↵↵The Gram-negative cell wall structure of Bacteroides sp. D2 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence the bacterium's interactions within its environment. This structural feature is essential for its survival and functionality in the competitive microbial communities typically found in the gut, where it may engage in symbiotic relationships with host organisms.↵↵Bacteroides sp. D2's metabolic capabilities and its adaptation to anaerobic conditions suggest that it may play a crucial role in nutrient cycling and energy harvest from indigestible carbohydrates, which can enhance the overall metabolic efficiency of the host. This indicates that Bacteroides sp. D2 is not only a participant in the microbial ecosystem but may also contribute to the maintenance of gut health through its metabolic activities, showcasing the importance of microbial diversity in supporting complex biological processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D2 negative 556259 ACGA00000000.2 Bac0009970 Acidaminococcus intestini strain D21 "Acidaminococcus intestini strain D21 is a Gram-negative, anaerobic cocci that is part of the diverse microbial communities found in the intestinal tract. Its Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may influence its interactions with other gut microbiota and its environment. As an anaerobe, A. intestini strain D21 thrives in oxygen-depleted conditions, which are typical of the gastrointestinal system.↵↵The coccoid morphology of this strain suggests a potential role in fermentative metabolic processes, where it may contribute to the degradation of complex carbohydrates and the production of short-chain fatty acids. These metabolites are important for maintaining gut health and providing energy to colonic cells. The presence of A. intestini strain D21 in the intestinal microbiome underscores the importance of anaerobic bacteria in digestion and nutrient absorption.↵↵Understanding the biological and ecological roles of A. intestini strain D21 can shed light on the intricate balance of gut microbiota, particularly in anaerobic environments. This strain may play a significant role in the overall metabolic network of the gut, participating in symbiotic relationships with other microorganisms and contributing to the host's metabolic health. Further studies could reveal more about its interactions within the gut ecosystem and its potential contributions to human health and disease." Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus intestini Negative Cocci Anaerobe 187327 ACGB00000000.1 Bac0009971 Corynebacterium accolens ATCC 49725 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens 525260 ACGD00000000.1 Bac0009972 Lentilactobacillus hilgardii ATCC 27305 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus hilgardii 525310 ACGG00000000.1 Bac0009973 Limosilactobacillus fermentum ATCC 14931 "Limosilactobacillus fermentum ATCC 14931 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This species is known to inhabit a variety of environments, suggesting a versatile ecological adaptability. As a facultative anaerobe, L. fermentum ATCC 14931 can thrive in both aerobic and anaerobic conditions, which may contribute to its ability to colonize diverse habitats, including fermented foods and the gastrointestinal tracts of various hosts.↵↵The unique morphology of L. fermentum, characterized by its rod shape and chain-like cell arrangement, may influence its interaction with other microbial communities and its ecological niches. This structural characteristic could facilitate its growth in biofilms, enhancing its survival and metabolic efficiency in fluctuating environments. Additionally, the ability to grow in the presence or absence of oxygen implies that L. fermentum ATCC 14931 may play a role in fermentation processes, potentially contributing to the production of lactic acid and other metabolites beneficial to food preservation and gut health.↵↵Overall, the ecological versatility, combined with its unique morphological traits, positions Limosilactobacillus fermentum ATCC 14931 as a significant organism in both natural and industrial ecosystems, highlighting its potential applications in microbiology and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 525325 ACGI00000000.1 Bac0009974 Lactobacillus jensenii JV-V16 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii 525329 ACGQ00000000.2 Bac0009975 Corynebacterium lipophiloflavum DSM 44291 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium lipophiloflavum aerobic 37 mesophilic 525263 ACHJ00000000.1 Bac0009976 Vibrio cholerae B33 "Vibrio cholerae B33 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits facultative anaerobic metabolism. This organism is classified as a heterotroph, meaning it requires organic compounds for energy and growth. It thrives optimally at a temperature of 20.0°C, suggesting a preference for cooler environments, which may influence its distribution and ecological niches.↵↵Vibrio cholerae B33 can inhabit diverse habitats, which is indicative of its ecological versatility. This adaptability may allow it to exploit various organic substrates in differing environments, enhancing its survival and proliferation. The ability to grow in both aerobic and anaerobic conditions further supports its ecological resilience, as it can occupy a range of environments where oxygen levels fluctuate.↵↵In summary, the combination of its rod shape, facultative anaerobic nature, and heterotrophic lifestyle, alongside its optimal growth temperature, positions Vibrio cholerae B33 as a potentially adaptable organism within various ecological contexts. This adaptability may influence its interactions with other microorganisms and its role in nutrient cycling within the ecosystems it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 417400 ACHZ00000000.1 Bac0009977 Ruminococcus sp. 5_1_39BFAA Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. 5_1_39BFAA 457412 ACII00000000.2 Bac0009978 Catonella morbi ATCC 51271 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Catonella Catonella morbi 592026 ACIL00000000.3 Bac0009979 Abiotrophia defectiva ATCC 49176 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Abiotrophia Abiotrophia defectiva microaerophile 592010 ACIN00000000.3 Bac0009980 Shuttleworthella satelles DSM 14600 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Shuttleworthella Shuttleworthella satelles 626523 ACIP00000000.2 Bac0009981 Pseudogulbenkiania ferrooxidans 2002 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Pseudogulbenkiania Pseudogulbenkiania ferrooxidans 279714 ACIS00000000.1 Bac0009982 Staphylococcus caprae M23864:W1 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus caprae aerobic 525378 ACJB00000000.1 Bac0009983 Staphylococcus epidermidis W23144 "Staphylococcus epidermidis W23144 is a Gram-positive cocci bacterium characterized by its occurrence in clusters and singles. This strain is known to thrive optimally at a temperature of 30.0°C, which suggests a preference for mesophilic conditions commonly found in host-associated environments. As a facultative anaerobe, S. epidermidis W23144 can adapt to varying oxygen levels, allowing it to survive in both aerobic and anaerobic conditions.↵↵Typically residing on human skin and mucosal surfaces, S. epidermidis serves a role as a member of the normal microbiota. While its pathogenic potential can be context-dependent, the presence of this organism in host-associated habitats highlights its importance in microbial communities. The ability of S. epidermidis W23144 to form clusters may facilitate its persistence in such environments and contribute to its survival strategy against host immune responses.↵↵Furthermore, the ecological insight into S. epidermidis W23144 lies in its potential role in biofilm formation. This characteristic is common among staphylococci and is particularly relevant in the context of medical devices and implants, where biofilms can develop and influence the interactions between the host and microbial inhabitants. Understanding the traits of S. epidermidis W23144 may provide valuable insights into its ecological dynamics and implications for health and disease." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 525376 ACJC00000000.1 Bac0009984 Dethiobacter alkaliphilus AHT 1 Bacillati Bacillota Dethiobacteria Dethiobacterales Dethiobacteraceae Dethiobacter Dethiobacter alkaliphilus anaerobic 555088 ACJM00000000.1 Bac0009985 Kingella oralis ATCC 51147 "Kingella oralis ATCC 51147 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbe is part of the normal flora of the human oral cavity and is categorized within the family Neisseriaceae. As a member of the oral microbiome, K. oralis plays a role in maintaining the balance of microbial communities within the mouth, potentially influencing both oral health and disease states.↵↵The organism is known for its facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments, which is particularly relevant considering its habitat in the oral cavity where oxygen levels can vary significantly. Kingella oralis is also notable for its ability to adhere to surfaces, a trait that may facilitate its colonization in the oral environment.↵↵Research on K. oralis is essential for understanding the complex interactions within the oral microbiome, as well as the potential implications of its presence in relation to oral health. The bacterium's role in the oral ecosystem underscores the importance of maintaining microbial diversity, which is crucial for preventing dysbiosis and the development of oral diseases. Future studies may further elucidate the specific functional roles of K. oralis in oral health, contributing to a broader understanding of its ecological significance." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella oralis negative 629741 ACJW00000000.2 Bac0009986 Acetomicrobium hydrogeniformans ATCC BAA-1850 strain OS1 "Acetomicrobium hydrogeniformans ATCC BAA-1850 strain OS1 is a Gram-negative, rod-shaped bacterium that exhibits chemotrophic and organotrophic metabolic capabilities. This strain is non-spore-forming, which suggests a reliance on stable environmental conditions for survival. It thrives optimally at a temperature of 45.0°C, indicating a preference for moderately thermophilic conditions.↵↵As an organotroph, Acetomicrobium hydrogeniformans utilizes organic compounds as an energy source, which is characteristic of many bacteria that play significant roles in biogeochemical cycles. The strain's chemotrophic nature further emphasizes its ability to derive energy from chemical processes, likely involving the oxidation of organic substrates. This dual metabolic strategy may allow it to adapt to various environments where organic matter is available, such as in anaerobic conditions.↵↵The ecological role of Acetomicrobium hydrogeniformans may be particularly relevant in environments rich in organic material, potentially contributing to processes such as fermentation or the degradation of complex organic compounds. Its optimal growth temperature suggests that it could inhabit geothermal or thermophilic environments, where it may participate in nutrient cycling and energy transfer within microbial communities. Understanding the metabolic pathways and ecological interactions of this strain could provide insight into its potential applications in bioremediation or bioenergy production, where thermophilic organisms are often harnessed for their metabolic capabilities." Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium hydrogeniformans Gram-negative rod non-motile 45 organotroph; chemotroph thermophilic non-spore-forming 649746 ACJX00000000.3 Bac0009987 Hallella bergensis DSM 17361 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hallella Hallella bergensis 585502 ACKS00000000.1 Bac0009988 Selenomonas noxia ATCC 43541 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas noxia anaerobic 970 ACKT00000000.1 Bac0009989 Leuconostoc mesenteroides subsp. cremoris ATCC 19254 "Leuconostoc mesenteroides subsp. cremoris ATCC 19254 is a Gram-positive coccus that typically exhibits a variety of cell arrangements, including singles, chains, and pairs. This facultative anaerobe thrives optimally at a temperature of 20.0°C, indicating a preference for cooler environments. The species is commonly found in multiple habitats, which may include fermented foods and dairy products, playing a significant role in various fermentation processes.↵↵The ability of L. mesenteroides subsp. cremoris to adapt to both aerobic and anaerobic conditions allows it to occupy diverse ecological niches, contributing to its utility in food fermentation. Its distinct morphological characteristics and metabolic versatility suggest that it may be involved in the production of lactic acid and other metabolites that affect flavor and preservation in food systems. Understanding the traits of this subspecies can provide insights into its potential applications in food science and microbiology, particularly in the development of novel fermentation strategies and the enhancement of food quality." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc mesenteroides Positive Cocci No 1 1 Facultative anaerobe 20 Mesophilic Multiple Free living Singles - Chains - Pairs 586220 ACKV00000000.1 Bac0009990 Selenomonas flueggei ATCC 43531 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas flueggei 970 ACLA00000000.1 Bac0009991 Limosilactobacillus antri DSM 16041 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus antri 525309 ACLL00000000.1 Bac0009992 Streptococcus salivarius SK126 "Streptococcus salivarius SK126 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. This bacterium is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen. As a member of the Streptococcus genus, S. salivarius SK126 is host-associated, suggesting its natural habitat resides within the oral cavity of humans.↵↵Streptococcus salivarius is known for its role in the oral microbiome, where it contributes to maintaining a balanced microbial community. Its presence is often associated with beneficial effects, such as the inhibition of pathogenic bacteria and the modulation of host immune responses. Given that S. salivarius SK126 is adapted to thrive in the complex environment of the oral cavity, it may play a crucial role in early colonization and establishment of the oral microbiota in newborns.↵↵This species exemplifies the intricate relationships that can develop between host-associated microbes and their human hosts, where beneficial interactions may contribute to oral health and overall well-being. Further research into the specific functions and interactions of S. salivarius SK126 could enhance our understanding of its ecological niche within the human microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 596322 ACLO00000000.1 Bac0009993 Bacillus cereus 172560W "Bacillus cereus 172560W is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This microbe exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for moderate environmental temperatures. ↵↵Bacillus cereus, as a species, is known for its diverse habitat, indicating its ability to adapt to various ecological niches. The ability to form chains may enhance its resilience in different environments by facilitating nutrient acquisition and promoting colonization. The aerobic nature of Bacillus cereus 172560W underscores its reliance on oxygen for metabolic processes, which can influence its distribution in habitats where oxygen levels vary.↵↵The adaptability and chain-forming characteristic of Bacillus cereus 172560W may confer certain advantages in competitive environments, potentially allowing it to thrive in nutrient-rich substrates. Understanding the ecological roles of this bacterium could provide insights into its interactions with other microorganisms and its contribution to nutrient cycling in diverse habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526967 ACLV00000000.1 Bac0009994 Bacillus wiedmannii strain MM3 "Bacillus wiedmannii strain MM3 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain demonstrates optimal growth at a temperature of 25.0°C, indicating a preference for moderate conditions which may reflect its adaptability to diverse habitats. The ability of Bacillus wiedmannii to inhabit multiple environments suggests a versatile ecological role, likely contributing to nutrient cycling and organic matter decomposition in various ecosystems. The characteristics of this strain align with the broader functional attributes commonly associated with members of the Bacillus genus, particularly its resilience and capacity to thrive in aerobic conditions. Further research into this strain could elucidate its specific ecological functions and potential biotechnological applications, particularly in processes that require aerobic microbial activity." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 ACLW00000000.1 Bac0009995 Bacillus mycoides strain AH621 "Bacillus mycoides strain AH621 is a Gram-positive, rod-shaped bacterium that thrives in the unique conditions of the deep sea, specifically within the Iheya Ridge hydrothermal vent field of the Okinawa Trough. As a facultative anaerobe, this strain can adapt to varying oxygen levels, allowing it to exploit the nutrient-rich environments associated with hydrothermal vent ecosystems.↵↵The presence of Bacillus mycoides in such extreme habitats suggests it may play a significant role in biogeochemical cycles within these deep-sea environments. Hydrothermal vents are known for their high temperatures and mineral-rich emissions, which create a distinct ecological niche. The ability of strain AH621 to survive and proliferate in these conditions may be indicative of its metabolic versatility and potential contributions to organic matter degradation or nutrient cycling in the vent ecosystem.↵↵Overall, Bacillus mycoides strain AH621 exemplifies microbial adaptation to extreme environments, shedding light on the resilience and ecological significance of microorganisms in deep-sea habitats. Further studies on this strain could enhance our understanding of microbial life in extreme conditions and its interactions within the hydrological and geochemical processes of hydrothermal vent systems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 ACLX00000000.1 Bac0009996 Bacillus cereus ATCC 4342 "Bacillus cereus ATCC 4342 is a Gram-positive, rod-shaped bacterium that typically forms chains. This organism thrives in a variety of habitats, indicating its ecological versatility, and demonstrates an optimal growth temperature of 25.0°C. As an aerobe, B. cereus ATCC 4342 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability is variable.↵↵The presence of B. cereus in diverse habitats suggests that it may play a role in nutrient cycling, contributing to the decomposition of organic matter and the overall microbial community dynamics. Its chain formation could be indicative of its reproductive strategy, allowing for increased surface area contact and potentially enhanced nutrient uptake in its environment. Understanding the environmental adaptability and metabolic requirements of B. cereus ATCC 4342 can provide insights into its ecological roles and potential applications in biotechnology and environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526977 ACLZ00000000.1 Bac0009997 Bacillus cereus m1550 "Bacillus cereus m1550 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This microbe exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for moderate conditions that may align with its diverse habitats. ↵↵Bacillus cereus species are known for their ability to inhabit a variety of environments, which may include soil, water, and plant surfaces. This versatility in habitat can contribute to its ecological role in nutrient cycling and decomposition processes. The aerobic nature of Bacillus cereus m1550 indicates that it relies on oxygen for metabolic functions, which is a characteristic feature of many members within the Bacillus genus. ↵↵The chain arrangement of cells could facilitate specific interactions within its environment, potentially enhancing its ability to colonize surfaces and form biofilms. Understanding the growth conditions and traits of Bacillus cereus m1550 is crucial for further studies, particularly in the context of its ecological functions and interactions within microbial communities. This bacterium's adaptability to various habitats underscores its potential significance in ecological dynamics and biogeochemical cycles." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526969 ACMA00000000.1 Bac0009998 Bacillus cereus BDRD-Cer4 "Bacillus cereus BDRD-Cer4 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain is optimally adapted to a temperature of 25.0°C, which suggests a preference for moderate environmental conditions. The species B. cereus is known for its ability to inhabit diverse habitats, indicating a versatile ecological niche where it can utilize various organic substrates for growth.↵↵The filamentous arrangement of B. cereus BDRD-Cer4 may facilitate interactions with its environment, potentially enhancing its ability to colonize surfaces and access nutrients. Its aerobic nature implies a reliance on oxygen for metabolic processes, which could influence its distribution in oxygen-rich environments and its competitive dynamics with other microorganisms.↵↵The presence of Bacillus cereus BDRD-Cer4 in multiple habitats may reflect its ecological resilience and adaptability, traits that are characteristic of many members of the Bacillus genus. These traits suggest that this bacterium could play a role in biogeochemical cycles, particularly in environments where organic matter decomposition is crucial. Further investigation into its metabolic capabilities could provide insights into its functional roles within its ecological niches." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526978 ACME00000000.1 Bac0009999 Bacillus cereus Rock3-28 "Bacillus cereus Rock3-28 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. The habitat of B. cereus Rock3-28 is noted to be diverse, which suggests its adaptability to various ecological niches.↵↵As a member of the Bacillus genus, B. cereus Rock3-28 is likely to exhibit traits common to many species within this group, including the ability to form spores, which contributes to its resilience in fluctuating environments. The aerobic nature of this strain implies that it relies on oxygen for growth and metabolism, which may influence its distribution in habitats rich in oxygen.↵↵The ability of B. cereus Rock3-28 to thrive in multiple habitats, coupled with its chain-forming characteristic, may play a significant role in its ecological interactions, such as biofilm formation. This trait could enhance its survival and competitiveness in various environments, reflecting a potential for complex interactions with other microbial communities. Further investigation into the specific ecological roles and interactions of B. cereus Rock3-28 could provide valuable insights into its contributions to microbial diversity and function in its natural habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526983 ACMI00000000.1 Bac0010000 Bacillus cereus Rock3-42 "Bacillus cereus Rock3-42 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives in aerobic conditions and has an optimal growth temperature of 25.0°C. Notably, B. cereus species, including Rock3-42, are often found in diverse habitats, indicating a broad ecological versatility. ↵↵The chain arrangement of B. cereus Rock3-42 suggests a social form of growth that may facilitate nutrient sharing or increase resilience against environmental stressors. Its aerobe nature implies a reliance on oxygen for metabolism, positioning it well in environments where organic matter decomposition occurs, such as soil and decaying plant material. The optimal growth temperature suggests that it may be well-adapted to temperate climates or environments where such temperatures are prevalent.↵↵Understanding the traits of B. cereus Rock3-42 emphasizes the ecological adaptability of this species within various environments, potentially contributing to nutrient cycling in its habitats. Further studies could explore its interactions with other microorganisms, as well as its role in biogeochemical processes, which could provide insights into its ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526985 ACMK00000000.1 Bac0010001 Bacillus mycoides strain AH603 "Bacillus mycoides strain AH603 is a Gram-positive, rod-shaped bacterium that thrives in the deep-sea environment of the Iheya Ridge hydrothermal vent field located in the Okinawa Trough. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels common in its unique habitat. ↵↵The deep-sea hydrothermal vent ecosystems are characterized by extreme conditions, including high temperatures and pressures, as well as the presence of reduced chemical compounds that serve as energy sources for microbial life. The ability of Bacillus mycoides AH603 to survive and proliferate in such an environment suggests that it may possess specialized metabolic pathways that utilize these unique resources effectively. ↵↵Furthermore, the presence of this bacterium in hydrothermal vent fields underscores the potential for microbial communities to play crucial roles in biogeochemical cycles in extreme environments. The adaptability of Bacillus mycoides strain AH603 highlights the significant evolutionary strategies that microorganisms have developed to colonize and thrive in habitats characterized by harsh physical and chemical conditions. Understanding its metabolic capabilities and ecological interactions could provide insights into the resilience of microbial life in extreme environments and inform biotechnological applications harnessing extremophilic traits." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 ACMP00000000.1 Bac0010002 Bacillus thuringiensis serovar sotto str. T04001 "Bacillus thuringiensis serovar sotto str. T04001 is a Gram-positive, rod-shaped bacterium that exhibits sporulation capabilities and is categorized as a facultative anaerobe. This microbe is typically found in host-associated environments, suggesting a potential symbiotic or opportunistic relationship with its host organisms. Its ability to sporulate indicates that it can withstand adverse environmental conditions, which may enhance its survival and persistence in various habitats. ↵↵As a facultative anaerobe, B. thuringiensis serovar sotto str. T04001 can metabolize in both aerobic and anaerobic conditions, allowing it to adapt to fluctuating oxygen levels within its ecological niche. This metabolic flexibility may play a crucial role in its interaction with host organisms, potentially influencing the dynamics of microbial communities in which it resides.↵↵A unique ecological insight into B. thuringiensis serovar sotto str. T04001 is its ability to thrive in host-associated environments, which may allow it to participate in nutrient cycling or contribute to the health of its host through various biochemical interactions. Such traits underscore the microbe's potential significance in its ecological context, warranting further investigation into its functional roles in host-associated microbiomes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 527026 ACNB00000000.1 Bac0010003 Rhodococcus erythropolis SK121 "Rhodococcus erythropolis SK121 is a Gram-positive, filamentous rod bacterium that thrives in various habitats and exhibits aerobic metabolism. This species is characterized by its unique filamentous cell arrangement, which may contribute to its adaptability in diverse environmental conditions. Rhodococcus erythropolis SK121 is optimally active at a temperature of 20.0°C, indicating a preference for moderate temperatures that may be common in its natural environments.↵↵The ecological versatility of R. erythropolis SK121 is notable, as it has been isolated from multiple habitats, suggesting a broad ecological niche that allows it to utilize a range of substrates. The aerobic nature of this bacterium further implies that it plays a role in aerobic decomposition processes, potentially contributing to nutrient cycling in its environments. ↵↵Furthermore, the filamentous morphology could enhance the bacterium's ability to form biofilms or aggregate with other microorganisms, thereby influencing community dynamics in various ecological settings. Understanding the traits and behaviors of R. erythropolis SK121 may provide insights into its ecological roles, particularly in bioremediation processes or other applications where microbial diversity and adaptability are essential." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 596309 ACNO00000000.1 Bac0010004 Ruegeria sp. TrichCH4B Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. TrichCH4B 644076 ACNZ00000000.1 Bac0010005 Thalassobium sp. R2A62 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thalassobium Thalassobium sp. R2A62 633131 ACOA00000000.1 Bac0010006 Eubacterium saphenum ATCC 49989 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae [Eubacterium] saphenum 592031 ACON00000000.1 Bac0010007 Faecalibacterium duncaniae strain A2-165 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium duncaniae 411483 ACOP00000000.2 Bac0010008 Lactobacillus jensenii 269-3 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii 596325 ACOY00000000.1 Bac0010009 Acinetobacter calcoaceticus RUH2202 "Acinetobacter calcoaceticus RUH2202 is a Gram-negative bacterium that exhibits strict aerobic metabolic capabilities. This organism is part of the Acinetobacter genus, which is known for its versatility in various environments, often thriving in soil and water. As an aerobe, A. calcoaceticus RUH2202 requires oxygen for growth, which positions it well in environments where oxygen is readily available.↵↵The Gram-negative nature of this microbe suggests that it possesses an outer membrane containing lipopolysaccharides, a feature that can influence its interactions with other microorganisms and its environment. Such characteristics may play a role in its survival and adaptability to changing conditions.↵↵Notably, the presence of A. calcoaceticus in various habitats underscores its potential ecological significance. Its ability to utilize aerobic respiration could facilitate the degradation of organic materials in oxygen-rich environments, thereby contributing to nutrient cycling. This trait highlights the role of A. calcoaceticus RUH2202 in ecological processes, such as the breakdown of pollutants or organic waste, emphasizing its importance in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus Negative Aerobe 575585 ACPK00000000.1 Bac0010010 Acinetobacter lwoffii SH145 "Acinetobacter lwoffii SH145 is a Gram-negative bacterium that exhibits aerobic respiration, indicating its requirement for oxygen for growth and metabolism. This species is part of the Acinetobacter genus, which is characterized by its ability to thrive in diverse environments and its notable resilience to various stressors. As an aerobe, A. lwoffii SH145 is adapted to environments where oxygen is available, allowing it to utilize aerobic metabolic pathways effectively.↵↵The Gram-negative nature of A. lwoffii SH145 suggests that it possesses an outer membrane containing lipopolysaccharides, a feature that can influence its interactions with the surrounding environment and other microorganisms. This trait is often associated with the bacterium’s ability to withstand certain antimicrobial agents, although specific resistance mechanisms for this strain are not detailed in the provided traits.↵↵Understanding the physiological traits of A. lwoffii SH145 can provide insights into its ecological roles, particularly in environments such as soil and water, where oxygen is present. Its ability to function as an aerobe may contribute to nutrient cycling processes in these ecosystems, underscoring its potential role in maintaining ecological balance. Overall, A. lwoffii SH145 exemplifies the adaptive strategies employed by bacteria in response to their oxygen availability, further highlighting the complexity of microbial life in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Aerobe 575588 ACPN00000000.1 Bac0010011 Lactobacillus crispatus 125-2-CHN "Lactobacillus crispatus 125-2-CHN is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. As a facultative anaerobe, it is capable of thriving in both aerobic and anaerobic environments, which may facilitate its survival and activity in various host-associated habitats. This strain is part of the Lactobacillus genus, known for its role in fermentative processes, particularly in the production of lactic acid, which can contribute to the maintenance of a balanced microbial community in the host.↵↵Lactobacillus crispatus species are commonly associated with the human microbiota, particularly in the gastrointestinal and urogenital tracts. Their presence in these environments is often correlated with beneficial effects, such as the inhibition of pathogenic organisms and the modulation of local immune responses. The ability to form chains may enhance its stability and resilience within the host-associated biofilms, potentially allowing for more effective colonization and persistence in these niches.↵↵The adaptability of L. crispatus 125-2-CHN to varying oxygen levels suggests a versatile metabolic capability, which could play a significant role in its ecological fitness. This metabolic flexibility may enable it to thrive in differing microenvironments within the host, contributing to its ecological significance in maintaining homeostasis in the microbial communities associated with human health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains 575595 ACPV00000000.1 Bac0010012 Xanthomonas citri pv. aurantifolii str. ICPB 10535 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 427082 ACPY00000000.1 Bac0010013 Limosilactobacillus fermentum 28-3-CHN "Limosilactobacillus fermentum 28-3-CHN is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The versatile nature of L. fermentum 28-3-CHN allows it to inhabit a variety of habitats, although specific ecological niches have not been detailed in the available data. ↵↵As a member of the Lactobacillus genus, this microbe is known for its role in fermentative processes, which are critical in various food production methods, particularly in the dairy industry. The facultative anaerobic characteristic suggests that L. fermentum 28-3-CHN can adapt to fluctuating oxygen levels, potentially enhancing its survival and metabolic efficiency in diverse environments. ↵↵Given its ability to form chains, this strain may interact synergistically with other microbial species in its habitat, contributing to complex microbial communities. This characteristic could play a role in its function within fermentation ecosystems, where cooperation among species is essential for optimal metabolic processes. The adaptability and chain formation of L. fermentum 28-3-CHN may also influence its functional properties in food fermentation, suggesting potential applications in enhancing the quality and stability of fermented products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 575599 ACQG00000000.1 Bac0010014 Micromonospora sp. M42 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. M42 457406 ACQO00000000.1 Bac0010015 Streptococcus sp. C150 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. C150 435842 ACRI00000000.1 Bac0010016 Streptococcus sp. M143 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. M143 563037 ACRK00000000.1 Bac0010017 Bacteroides sp. 3_1_13 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_1_13 457389 ACRR00000000.1 Bac0010018 Bacteroides sp. 3_1_40A "Bacteroides sp. 3_1_40A is a Gram-negative bacterium belonging to the genus Bacteroides, which is characterized by its rod-shaped morphology and the presence of an outer membrane containing lipopolysaccharides. This microbe is part of the diverse microbiota found in various environments, particularly in the gastrointestinal tracts of mammals, where it plays a crucial role in the breakdown of complex carbohydrates and the fermentation of dietary fibers.↵↵As a member of the Bacteroides genus, Bacteroides sp. 3_1_40A is expected to contribute to the maintenance of gut health by aiding digestion and influencing the host's immune response. These bacteria are known for their ability to adapt to different substrates and their potential to engage in mutualistic relationships with their host, promoting nutrient absorption and overall gut homeostasis.↵↵Furthermore, the presence of Bacteroides sp. 3_1_40A within the gut microbiome may be indicative of specific dietary patterns, as these microbes often thrive in environments rich in plant-derived polysaccharides. Their metabolic activities can lead to the production of short-chain fatty acids, which are beneficial for colonic health and may have systemic effects on host metabolism.↵↵Overall, Bacteroides sp. 3_1_40A serves as an important player in the complex interplay of gut microbiota, highlighting the significance of microbial diversity in supporting host health and digestive functions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 3_1_40A negative 469593 ACRT00000000.1 Bac0010019 Rothia mucilaginosa M508 "Rothia mucilaginosa M508 is a Gram-positive cocci bacterium that exhibits microaerophilic characteristics, thriving in low-oxygen environments typically associated with host-associated habitats. This organism is part of the diverse microbiota found in various host organisms, where it may play a role in maintaining microbial balance. The coccal shape of R. mucilaginosa M508 is characteristic of several members within its genus, which are often associated with human oral and respiratory tracts.↵↵As a microaerophile, R. mucilaginosa M508 requires lower levels of oxygen for optimal growth compared to aerobic organisms, suggesting that it may occupy niches in the host where oxygen concentrations are reduced. This trait likely influences its interactions with both the host's immune system and other microbial inhabitants, potentially contributing to a symbiotic relationship within the microbiome. ↵↵Further investigation into the functional roles of R. mucilaginosa M508 in host-associated environments could reveal insights into its contributions to health and disease states, particularly in relation to its microaerophilic lifestyle and ecological adaptability. Understanding the dynamics of such microorganisms is crucial for elucidating the complex interactions that define host-microbe relationships." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa Positive Cocci Yes 1 1 Microaerophile Mesophilic HostAssociated Free living 563033 ACSB00000000.1 Bac0010020 Corynebacterium matruchotii ATCC 14266 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii 553207 ACSH00000000.2 Bac0010021 Actinomyces sp. oral taxon 849 str. F0330 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 849 653386 ACTB00000000.1 Bac0010022 Erysipelotrichaceae bacterium 6_1_45 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium 6_1_45 469614 ACTK00000000.1 Bac0010023 Lachnospiraceae bacterium 1_4_56FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 1_4_56FAA 2683688 ACTN00000000.1 Bac0010024 Lachnospiraceae bacterium 2_1_58FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 2_1_58FAA 658082 ACTO00000000.1 Bac0010025 Lachnospiraceae bacterium 5_1_57FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 5_1_57FAA 658085 ACTR00000000.1 Bac0010026 Ralstonia sp. 5_2_56FAA Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. 5_2_56FAA 658080 ACTT00000000.2 Bac0010027 Parabacteroides sp. D25 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. D25 658661 ACUA00000000.1 Bac0010028 Porphyromonas sp. 31_2 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. 31_2 658663 ACUD00000000.1 Bac0010029 Synergistes sp. 3_1_syn1 Thermotogati Synergistota Synergistia Synergistales Synergistaceae Synergistes Synergistes sp. 3_1_syn1 457415 ACUH00000000.1 Bac0010030 Fusobacterium animalis 11_3_2 "Fusobacterium animalis 11_3_2 is a Gram-negative, nonsporulating, rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is primarily associated with host organisms, suggesting a close relationship with its biological hosts, which could range from mammals to other animals. As an anaerobe, F. animalis 11_3_2 is adapted to environments devoid of oxygen, which may influence its metabolic pathways and interactions within the host ecosystem.↵↵The anaerobic nature of this organism implies a potential role in the complex microbial communities found in the gastrointestinal tracts of its hosts, where it may contribute to the fermentation processes or the breakdown of organic material. The host-associated habitat indicates that F. animalis 11_3_2 could be involved in symbiotic relationships, possibly aiding in digestion or influencing the immune responses of the host.↵↵Understanding the specific interactions and functions of Fusobacterium animalis 11_3_2 within its ecological niche could provide insights into the dynamics of gut microbiomes and the role of anaerobic bacteria in maintaining health and homeostasis in host organisms. Further research may elucidate the contributions of this organism to microbial diversity and host-microbe interactions in anaerobic environments." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 457403 ACUO00000000.1 Bac0010031 Slackia exigua ATCC 700122 Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Slackia Slackia exigua anaerobic 649764 ACUX00000000.2 Bac0010032 Segatella oris F0302 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella oris 649760 ACUZ00000000.2 Bac0010033 Campylobacter showae RM3277 "Campylobacter showae RM3277 is a Gram-negative, aerobic bacterium characterized by its distinctive spiral shape and motility, which is facilitated by a single polar flagellum. This organism is part of the Campylobacter genus, which is known for its role in various environmental and biological contexts. The aerobic nature of C. showae RM3277 indicates that it requires oxygen for metabolic processes, positioning it within ecosystems where oxygen is readily available.↵↵The Gram-negative cell wall structure of C. showae RM3277 consists of a thin peptidoglycan layer sandwiched between an inner cytoplasmic membrane and an outer membrane containing lipopolysaccharides. This structural arrangement is typical of many bacteria in the Campylobacter genus and plays a critical role in its interactions with the environment, including resistance to certain antibiotics and the immune responses of potential hosts.↵↵C. showae RM3277's aerobic lifestyle suggests that it may thrive in environments such as water sources or surfaces exposed to air, where it can utilize oxygen for growth. This trait may also imply a role in biogeochemical cycles, particularly in the degradation of organic matter in aerobic conditions. Understanding the ecological niche of C. showae RM3277 could provide insights into its potential interactions within microbial communities and its contributions to environmental processes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae Negative Aerobe 553219 ACVQ00000000.1 Bac0010034 Bacillus sp. 2_A_57_CT2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 2_A_57_CT2 665959 ACWD00000000.1 Bac0010035 Bacteroides eggerthii 1_2_48FAA "Bacteroides eggerthii 1_2_48FAA is a Gram-negative, anaerobic bacterium belonging to the genus Bacteroides. This organism is characterized by its ability to thrive in environments devoid of oxygen, which aligns with the metabolic requirements typical of many members within the Bacteroidaceae family. As an anaerobe, B. eggerthii 1_2_48FAA likely engages in fermentation processes, utilizing organic compounds as substrates for energy production in the absence of oxygen. ↵↵The Gram-negative classification indicates that B. eggerthii possesses a distinctive cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides. This structural feature can influence the bacterium's interactions with its environment, including its resilience against certain antibiotics and its potential role in the gut microbiome.↵↵Bacteroides species are often found in the intestines of humans and other mammals, where they play critical roles in the digestion of complex carbohydrates and the maintenance of gut health. While specific ecological roles of B. eggerthii 1_2_48FAA are not detailed here, the presence of anaerobic bacteria like this one underscores the importance of microbial diversity in anaerobic environments, particularly in the human gut, where they contribute to metabolic processes such as short-chain fatty acid production, which is vital for host health. Understanding the traits of B. eggerthii 1_2_48FAA may enhance insights into the functional dynamics of gut microbiota and their contributions to overall host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides eggerthii Negative Anaerobe 665953 ACWG00000000.1 Bac0010036 Bacteroides fragilis strain 2_1_56FAA "Bacteroides fragilis strain 2_1_56FAA is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as an anaerobic chemoorganotroph. This strain optimally thrives at a temperature of 37.0°C, which is consistent with its habitat, as it is associated with host organisms. ↵↵As a member of the Bacteroides genus, this strain is likely to play a significant role in the microbiota of the gastrointestinal tract, where it may contribute to the breakdown of complex carbohydrates and the synthesis of essential nutrients. The anaerobic nature of Bacteroides fragilis strain 2_1_56FAA suggests that it is well adapted to environments devoid of oxygen, such as the human intestine, where it can perform metabolic processes that are crucial for maintaining gut health.↵↵The presence of this strain in a host-associated habitat highlights its potential importance in microbial community dynamics and interactions within the gut microbiome. It may participate in symbiotic relationships that support the host's digestive processes and overall health, thereby illustrating the intricate balance of microbial life within host-associated environments. Further research into its specific roles and interactions could provide valuable insights into the functional contributions of Bacteroides species in human health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 ACWI00000000.1 Bac0010037 Clostridium sp. 7_3_54FAA Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. 7_3_54FAA 665940 ACWK00000000.1 Bac0010038 Lachnospiraceae bacterium 3_1_46FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 3_1_46FAA 665950 ACWP00000000.1 Bac0010039 Lachnospiraceae bacterium 8_1_57FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 8_1_57FAA 665951 ACWQ00000000.1 Bac0010040 Tannerella sp. 6_1_58FAA_CT1 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella sp. 6_1_58FAA_CT1 665949 ACWX00000000.1 Bac0010041 Prevotella melaninogenica D18 "Prevotella melaninogenica D18 is a Gram-negative, non-sporulating rod-shaped bacterium that thrives in anaerobic environments, which suggests its ecological specialization in low-oxygen niches. This species is primarily host-associated, indicating a symbiotic or commensal relationship with its host organisms. ↵↵Prevotella melaninogenica is known to metabolize a range of substrates, contributing to its role in various biological processes within its habitat. Its anaerobic nature allows it to survive in environments where oxygen is limited, such as the gastrointestinal tract of mammals. This adaptability underscores its potential involvement in maintaining the delicate balance of microbial communities within host systems.↵↵The presence of this bacterium in host-associated environments may have implications for nutrient processing and absorption, as well as interactions with other microbial species. Understanding the specific roles of Prevotella melaninogenica D18 in these ecosystems can provide insights into microbial dynamics and health. Furthermore, its ability to form part of the complex microbial flora may influence the overall metabolic activities within the host, contributing to the intricate interplay between host and microbiota in anaerobic conditions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 575612 ACWY00000000.1 Bac0010042 Brucella abortus bv. 5 str. B3196 "Brucella abortus bv. 5 str. B3196 is a Gram-negative, nonsporulating rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37.0°C, which aligns with its adaptation to warm-blooded hosts. As a facultative aerobe, B. abortus bv. 5 is capable of growing in both the presence and absence of oxygen, providing it with a versatile metabolic capability that may facilitate its survival in diverse environments.↵↵The habitat of this bacterium is classified as multiple, suggesting that it can inhabit various ecological niches, which may include both terrestrial and potentially aquatic environments. This adaptability to different habitats could contribute to its persistence and transmission in different ecological contexts.↵↵Understanding the traits of B. abortus bv. 5 str. B3196 is crucial for comprehending its ecological roles and potential interactions with other microorganisms. The ability to thrive in varying oxygen levels and temperatures may position this bacterium as a significant player in microbial communities where temperature and oxygen fluctuation are prevalent." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella abortus Negative Rod No 1 2 Facultative aerobe 37 Mesophilic Multiple Free living Singles Nonsporulating 520453 ACXC00000000.1 Bac0010043 Escherichia coli B088 "Escherichia coli B088 is a Gram-negative, rod-shaped bacterium that typically exists in pair or single arrangements. This strain is characterized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli B088 exhibits optimal growth at 37.0°C, which aligns with the average human body temperature, indicating its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli is commonly found in the intestines of warm-blooded organisms, where it plays a crucial role in the digestion and fermentation of nutrients. The ability to survive in varied oxygen conditions enables E. coli B088 to exploit different niches within the host environment, potentially contributing to its metabolic versatility.↵↵Understanding the growth conditions and cellular characteristics of E. coli B088 can provide insights into its ecological role as a commensal organism in the gastrointestinal tract. Its facultative anaerobic nature and optimal temperature suggest that it may play a significant role in maintaining gut homeostasis and influencing host health. Further research on this strain could elucidate its specific interactions within the microbiome and its potential contributions to nutrient cycling and microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 550672 ACXE00000000.1 Bac0010044 Vibrio mimicus VM603 "Vibrio mimicus VM603 is a Gram-positive bacterium characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This organism is part of the Vibrio genus, which is commonly associated with aquatic habitats. The Gram-positive nature of V. mimicus VM603 suggests the presence of a thick peptidoglycan layer in its cell wall, which is a distinctive feature compared to its Gram-negative relatives.↵↵As a facultative anaerobe, V. mimicus VM603 can utilize oxygen for respiration when available, but it can also switch to fermentation or anaerobic respiration in the absence of oxygen. This metabolic flexibility may confer advantages in varying environmental conditions, particularly in fluctuating oxygen levels often found in marine ecosystems.↵↵The ecological role of V. mimicus VM603 may include participation in nutrient cycling within its habitat, potentially contributing to the degradation of organic matter. Additionally, its adaptability to different oxygen conditions may enable it to colonize diverse niches within aquatic environments, where oxygen availability can vary significantly. Understanding the metabolic capabilities of V. mimicus VM603 offers insights into its potential interactions within microbial communities and its role in ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus Positive Facultative anaerobe 671074 ACYU00000000.1 Bac0010045 Vibrio metschnikovii CIP 69.14 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio metschnikovii 675813 ACZO00000000.1 Bac0010046 Erysipelotrichaceae bacterium 5_2_54FAA Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium 5_2_54FAA 552396 ACZW00000000.2 Bac0010047 Gardnerella vaginalis AMD "Gardnerella vaginalis AMD is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon sources. G. vaginalis AMD is primarily associated with host environments, suggesting a close relationship with human hosts, particularly in the vaginal microbiome.↵↵The presence of Gardnerella vaginalis in the vaginal flora is often linked to a complex interplay between various microbial species, contributing to the overall balance of the microbial community. While G. vaginalis is typically present in low numbers in healthy individuals, its elevated levels have been associated with perturbations in the vaginal microbiota, highlighting its potential role in maintaining microbial homeostasis. ↵↵Given its anaerobic requirement, G. vaginalis AMD may play a critical role in the fermentation processes that occur within the host environment, potentially influencing the local pH and metabolic activities of the surrounding microbial community. This interaction underscores the importance of understanding G. vaginalis not only as a single entity but also in the context of its ecological niche, where it may contribute to the dynamics of microbial interactions and the overall health of the host." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 682147 ADAM00000000.1 Bac0010048 Escherichia coli M718 "Escherichia coli M718 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli M718 possesses the metabolic flexibility to utilize both aerobic and anaerobic respiration, allowing it to occupy various niches within the host environment effectively.↵↵The structural characteristics of E. coli M718, particularly its Gram-negative cell wall, suggest an ability to resist certain environmental stresses and may also influence its interactions with the host's immune system. The arrangement of cells in pairs and singles may facilitate specific growth patterns and metabolic interactions, potentially enhancing its survival and proliferation within the host.↵↵Given these traits, E. coli M718 is likely to play a role in the complex microbiota of its host, contributing to metabolic processes and possibly influencing the host's health. The adaptability of E. coli M718 to varying oxygen levels further suggests its potential involvement in diverse biological processes that occur within the host, such as fermentation and biodegradation. Understanding the specific interactions of this strain within its ecological niche could provide insights into the dynamics of host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656419 ADAW00000000.1 Bac0010049 Escherichia coli H591 "Escherichia coli H591 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells, reflecting its diverse cellular arrangement. This strain thrives optimally at 37.0°C, which aligns with the average human body temperature, suggesting a close association with warm-blooded hosts. E. coli H591 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which enhances its adaptability to varying conditions within the host's microbiome.↵↵The habitat of E. coli H591 is host-associated, implying that it may play a role in the complex interactions within the gastrointestinal tract of its host. This association with a host environment could facilitate a range of metabolic activities, including fermentation processes and nutrient absorption, which are critical for maintaining gut health. Moreover, the ability to exist in both oxygen-rich and oxygen-poor conditions may allow E. coli H591 to occupy various niches within the host, potentially influencing microbial diversity and ecosystem stability.↵↵The adaptability and resilience of E. coli H591 in different oxygen states and its optimal growth temperature suggest it could serve as a model organism for studying microbial dynamics in host-associated microbiomes, furthering our understanding of microbial interactions and their implications for host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656408 ADBB00000000.1 Bac0010050 Vibrio sp. RC586 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. RC586 675815 ADBD00000000.1 Bac0010051 Neisseria polysaccharea ATCC 43768 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria polysaccharea microaerophile 546267 ADBE00000000.1 Bac0010052 Neisseria elongata subsp. glycolytica ATCC 29315 "Neisseria elongata subsp. glycolytica ATCC 29315 is a Gram-negative bacterium characterized by its rod-shaped morphology. This subspecies is part of the Neisseriaceae family and is notable for its glycolytic capabilities, which may influence its metabolic processes and ecological interactions. ↵↵As a member of the Neisseria genus, N. elongata subsp. glycolytica is distinguished from other Neisseria species by specific biochemical traits and growth characteristics. While detailed metabolic pathways and ecological niches are not specified, the glycolytic nature of this subspecies suggests a potential versatility in carbohydrate metabolism, which could enable it to thrive in various environments.↵↵The Gram-negative nature of N. elongata subsp. glycolytica implies the presence of a thin peptidoglycan layer surrounded by an outer membrane, containing lipopolysaccharides that can play a significant role in its interaction with the surrounding environment and host organisms. This structural composition may afford the bacterium certain advantages in resisting antimicrobial agents and adapting to different ecological conditions.↵↵In summary, Neisseria elongata subsp. glycolytica ATCC 29315 represents a unique microbial entity within the Neisseria genus, with potential implications for its metabolic versatility and ecological adaptability, particularly in environments rich in carbohydrates. Further research could elucidate its specific roles within microbial communities and its interactions with other organisms." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria elongata negative 546263 ADBF00000000.1 Bac0010053 Photobacterium damselae subsp. damselae CIP 102761 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 675817 ADBS00000000.1 Bac0010054 Serratia odorifera DSM 4582 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia odorifera 667129 ADBY00000000.1 Bac0010055 Bacteroides sp. D22 "Bacteroides sp. D22 is a Gram-negative bacterium characterized by its non-spore-forming, rod-shaped morphology. As a member of the Bacteroides genus, it is likely to be part of the complex microbiota found in various environments, particularly within the gastrointestinal tracts of mammals, where it can play significant roles in the fermentation of complex carbohydrates. ↵↵The Gram-negative nature of Bacteroides sp. D22 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may contribute to its resistance to certain antibiotics and its ability to survive in diverse environments. This structural feature is common among members of the Bacteroides genus and is indicative of their ecological adaptability.↵↵While specific metabolic capabilities and ecological roles of Bacteroides sp. D22 are not detailed in the provided traits, members of this genus are generally known for their involvement in the breakdown of dietary fiber and other complex polysaccharides, ultimately influencing nutrient absorption and overall gut health. ↵↵The presence of Bacteroides sp. D22 within microbial communities may contribute to the modulation of host immune responses and the maintenance of gut homeostasis, although the precise interactions and effects of this specific strain remain to be elucidated. Overall, Bacteroides sp. D22 exemplifies the intricate relationships between microbial populations and their hosts in maintaining digestive health and influencing metabolic processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D22 negative 585544 ADCK00000000.1 Bac0010056 Bacteroides sp. 1_1_30 "Bacteroides sp. 1_1_30 is a Gram-negative bacterium belonging to the diverse genus Bacteroides, which is commonly found in various anaerobic environments, particularly within the gastrointestinal tract of mammals. This microbe exhibits the characteristic features of Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions within microbial communities.↵↵As a member of the Bacteroides genus, Bacteroides sp. 1_1_30 is likely to play a significant role in the digestion of complex carbohydrates, contributing to the breakdown of polysaccharides and the fermentation processes essential for nutrient absorption in the host. Moreover, its presence in the gut microbiota underscores its potential involvement in maintaining gut health and homeostasis, as many Bacteroides species are known to participate in the synthesis of essential metabolites and the modulation of immune responses.↵↵The unique trait of Bacteroides sp. 1_1_30 as a Gram-negative organism might also suggest specific interactions with other microbial species and host cells, potentially influencing the overall microbial diversity and functionality within its ecological niche. Understanding the precise role of this bacterium within the gut microbiome could provide insights into its contributions to metabolic processes and its potential implications for host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 1_1_30 negative 457387 ADCL00000000.1 Bac0010057 Bilophila sp. 4_1_30 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila sp. 4_1_30 693988 ADCO00000000.1 Bac0010058 Lachnospiraceae bacterium 6_1_37FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 6_1_37FAA 658656 ADCR00000000.1 Bac0010059 Prevotella sp. C561 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. C561 563031 ADCT00000000.1 Bac0010060 Enterococcus faecalis S613 "Enterococcus faecalis S613 is a Gram-positive cocci that exhibits facultative anaerobic metabolism and thrives optimally at a temperature of 37.0°C. As a chemoorganotroph, this strain derives its energy from organic compounds, which supports its versatility in various ecological niches. E. faecalis is commonly found in multiple habitats, indicating its adaptability to diverse environments. ↵↵The Gram-positive nature of E. faecalis S613 suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience under varying environmental conditions. Its facultative anaerobic capability allows it to survive in both aerobic and anaerobic conditions, further enhancing its ecological adaptability. ↵↵Understanding the metabolic characteristics and habitat versatility of E. faecalis S613 can provide insights into its role in microbial communities, particularly in environments where organic materials are abundant. This adaptability may play a significant role in nutrient cycling and the maintenance of microbial diversity in its habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 699185 ADDP00000000.1 Bac0010061 Lactobacillus gasseri SV-16A-US "Lactobacillus gasseri SV-16A-US is a Gram-positive, rod-shaped bacterium that typically exists in chains or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments, which is characteristic of many Lactobacillus species associated with host organisms. The optimal growth temperature for L. gasseri SV-16A-US is 25.0°C, suggesting a preference for moderate environmental conditions that may be found within its host habitat.↵↵As a member of the Lactobacillus genus, L. gasseri SV-16A-US is likely involved in various fermentation processes and may contribute to the maintenance of gut health in its associated host. The presence of this microbe in host-associated habitats underscores its potential role in symbiotic relationships, particularly in the modulation of the host's microbiota and overall metabolic processes. This strain's survival strategies as a facultative anaerobe may allow it to thrive in diverse microenvironments within the host, adapting to varying oxygen levels while contributing to the microbial community's stability and resilience. Further research into L. gasseri SV-16A-US could illuminate its specific contributions to host health and its interactions within the complex ecosystem of the gut microbiome." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains - Singles 575604 ADDY00000000.1 Bac0010062 Hoylesella buccalis ATCC 35310 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella buccalis 679190 ADEG00000000.1 Bac0010063 Gardnerella pickettii 00703Bmash "Gardnerella pickettii 00703Bmash is a Gram-positive, rod-shaped bacterium characterized as a nonsporulating, anaerobic chemoheterotroph. This organism thrives optimally at 37.0 °C, which is consistent with the temperature of the human body, suggesting a potential association with warm-blooded hosts. The anaerobic nature of G. pickettii indicates that it likely inhabits environments where oxygen is limited, aligning with its host-associated habitat.↵↵As a chemoheterotroph, G. pickettii 00703Bmash derives its energy from organic compounds, which may be sourced from the host's metabolic byproducts or other organic matter present in its environment. This trait underscores its adaptability in environments where nutrients can vary, particularly within host-associated niches, where competition and resource availability are key factors.↵↵Given these characteristics, it is plausible that Gardnerella pickettii 00703Bmash plays a role in the microbial ecology of its associated host, potentially contributing to the maintenance of microbial balance in anaerobic environments. Further studies could elucidate its specific interactions with host tissues and other microbial communities, enhancing our understanding of its ecological role and potential metabolic functions in anaerobic ecosystems." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella pickettii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 698958 ADET00000000.1 Bac0010064 Gardnerella pickettii 00703C2mash "Gardnerella pickettii 00703C2mash is a Gram-positive, rod-shaped bacterium that exhibits a nonsporulating characteristic and thrives optimally at a temperature of 37.0°C. This microbe is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and growth, and it is adapted to anaerobic environments, suggesting it flourishes in conditions devoid of oxygen. ↵↵Typically found in host-associated habitats, G. pickettii 00703C2mash may play important roles in the microbiota of its associated hosts, potentially contributing to the overall microbial ecosystem and influencing host health. The specific interactions and functions of this bacterium within its ecological niche are not fully elucidated but underscore the significance of host-associated microorganisms in maintaining microbial balance. ↵↵As a member of the anaerobic microbiome, G. pickettii 00703C2mash could engage in complex biochemical interactions with other microbial species, affecting nutrient cycling and metabolic processes in its environment. Understanding the traits and behaviors of such bacteria could provide valuable insights into the dynamics of microbial communities and their implications for host biology and health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella pickettii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 698959 ADEU00000000.1 Bac0010065 Gardnerella vaginalis 6119V5 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella bretellae 3383031 ADEW00000000.1 Bac0010066 Pyramidobacter piscolens W5455 "Pyramidobacter piscolens W5455 is a Gram-negative, rod-shaped anaerobic bacterium that thrives optimally at a temperature of 29.0°C. This microbe's anaerobic nature suggests it occupies environments where oxygen is limited or absent, potentially influencing its metabolic pathways and ecological interactions. ↵↵The rod shape of Pyramidobacter piscolens W5455 may confer advantages in motility and nutrient acquisition in its specific habitat, although the precise ecological niche it occupies remains to be characterized. Given its optimal growth temperature, it is likely adapted to moderate thermal environments, which may be indicative of its natural habitat in soil or sediment layers where conditions are stable and conducive for sustained anaerobic activity.↵↵Further exploration of Pyramidobacter piscolens W5455 could provide insights into its role in biogeochemical cycles, particularly in carbon and nitrogen cycling, where anaerobic bacteria are known to play crucial roles. Understanding the metabolic capabilities of this organism may reveal its contributions to organic matter degradation and nutrient recycling in its ecosystem." Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens Gram-negative rod non-motile anaerobic 29 mesophilic 352165 ADFP00000000.1 Bac0010067 Prevotella amnii CRIS 21A-A Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella amnii 679191 ADFQ00000000.1 Bac0010068 Cutibacterium acnes J139 "Cutibacterium acnes J139 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is predominantly found in host-associated habitats, suggesting a close relationship with its host organisms. ↵↵As an anaerobe, C. acnes J139 relies on environments devoid of oxygen, typically residing in deep skin layers and hair follicles. Its presence in these anaerobic niches highlights its potential role in the skin microbiome, where it may contribute to the maintenance of skin homeostasis. The bacterium's adaptation to host-associated habitats indicates a specialized ecological niche that could influence the microbial balance on the skin surface.↵↵Given its optimal growth temperature aligns with that of the human body, C. acnes J139 may play a significant role in the skin's microbial community, potentially impacting skin health and disease states. Understanding the ecological dynamics of this strain could provide insights into its contributions to skin microbiota and its interactions with other microbial species in the host environment." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 679194 ADFS00000000.1 Bac0010069 Veillonella parvula ATCC 17745 "Veillonella parvula ATCC 17745 is a Gram-negative, anaerobic cocci bacterium that typically arranges itself in pairs and chains. This microbe is characterized by its association with host organisms, indicating its niche as a commensal inhabitant within specific biological environments, such as the human oral cavity and gastrointestinal tract. ↵↵As a member of the Veillonella genus, V. parvula is notable for its unique metabolic capabilities, particularly its ability to ferment lactic acid, which is a byproduct of carbohydrate metabolism. This fermentation process may contribute to the microbial ecology of the host, influencing local pH levels and modulating the growth of other microbial communities. ↵↵The anaerobic nature of V. parvula highlights its adaptation to environments devoid of oxygen, where it thrives alongside other anaerobes while potentially playing a role in maintaining microbial balance. Understanding the physiological traits of V. parvula not only sheds light on its functional role in the host-associated microbiome but also suggests potential implications for the overall health of the host organism, particularly in maintaining oral and gastrointestinal health. The presence of V. parvula in these habitats underscores its importance in the complex interplay of microbial interactions, emphasizing its contribution to the diverse ecology of the human microbiome." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella parvula Negative Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Chains - Pairs 686660 ADFU00000000.1 Bac0010070 Paenibacillus larvae subsp. larvae DSM 25719 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae 697286 ADFW00000000.1 Bac0010071 Prevotella nigrescens F0103 "Prevotella nigrescens F0103 is a Gram-negative, anaerobic bacterium that is part of the diverse microbial community found in various environments, particularly within the human oral cavity and gastrointestinal tract. As an anaerobe, P. nigrescens F0103 thrives in environments devoid of oxygen, suggesting its adaptation to specific niches where oxygen levels are low or absent. This trait is essential for its survival and metabolic processes, as it utilizes fermentation pathways to obtain energy in the absence of oxygen.↵↵The Gram-negative nature of P. nigrescens F0103 indicates that it possesses a characteristic outer membrane, which is comprised of lipopolysaccharides, contributing to its structural integrity and influencing its interactions with other microbial communities and host tissues. The presence of this outer membrane also plays a role in the bacterium's resistance to certain antimicrobial agents.↵↵Prevotella species, including P. nigrescens F0103, are known to participate in complex interactions within microbial consortia, potentially influencing host health and disease states through their metabolic activities. The ability of P. nigrescens F0103 to thrive in anaerobic conditions positions it as a significant player in biogeochemical cycles within its ecological niche, highlighting the importance of anaerobic bacteria in maintaining microbial diversity and stability in their environments. Further research into its specific roles and interactions could provide valuable insights into the dynamics of microbial communities in human health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella nigrescens Negative Anaerobe 702439 ADGJ00000000.1 Bac0010072 Edwardsiella tarda ATCC 23685 "Edwardsiella tarda ATCC 23685 is a Gram-negative bacterium recognized for its relevance in both aquatic environments and as a potential pathogen in various hosts. This organism is part of the family Enterobacteriaceae and is characterized by its rod-shaped morphology. E. tarda is known to thrive in freshwater environments, indicating its adaptation to aquatic ecosystems. ↵↵The biochemical properties of E. tarda include the ability to ferment certain carbohydrates, which may contribute to its metabolic versatility in diverse ecological niches. Additionally, its Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, is significant for its interactions with the environment and potential host organisms. ↵↵E. tarda is often studied in the context of fish pathology, as it has been implicated in diseases affecting both freshwater and marine species. Understanding the traits of E. tarda, particularly its Gram-negative nature and metabolic capabilities, can provide insights into its ecological roles and interactions within aquatic ecosystems. The presence of E. tarda in freshwater habitats suggests that it may play a role in nutrient cycling and microbial community dynamics, emphasizing its importance in maintaining ecological balance in aquatic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella tarda negative 500638 ADGK00000000.1 Bac0010073 Campylobacter jejuni subsp. jejuni 414 "Campylobacter jejuni subsp. jejuni 414 is a Gram-negative bacterium characterized by its spirilla shape and the capability to arrange in chains or exist as singles. This microbe is a heterotroph, indicating that it derives its energy from organic compounds. C. jejuni subsp. jejuni 414 is classified as a microaerophile, requiring reduced oxygen levels for optimal growth, which aligns with its ecological adaptations. ↵↵The optimal temperature for this subspecies is notably low, although the specific temperature range is not provided; such an adaptation may suggest its ability to thrive in cooler environmental niches. Campylobacter species, including this subspecies, are often associated with a variety of habitats, which may include both terrestrial and aquatic environments. Given its ecological versatility, C. jejuni subsp. jejuni 414 may occupy niches that allow it to interact with diverse microbial communities.↵↵This bacterium's unique combination of traits, particularly its microaerophilic requirement and heterotrophic lifestyle, positions it as an organism of interest for understanding microbial interactions in low-oxygen environments, potentially influencing nutrient cycling and energy flow within its habitats. Further investigation of its ecological roles could provide insights into its contributions to microbial diversity and function in various ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 683083 ADGM00000000.1 Bac0010074 Escherichia coli M056 "Escherichia coli M056 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a common characteristic of many E. coli strains. E. coli M056 has an optimal growth temperature of 37.0°C, aligning with the physiological temperature of its primary hosts, which suggests an adaptation for survival within host-associated habitats.↵↵Being host-associated, E. coli M056 is likely to inhabit the gastrointestinal tracts of various organisms, where it may play a role in nutrient absorption and gut health. The ability to grow in varying oxygen conditions could facilitate its survival in diverse microenvironments within the host. This adaptability is significant as it may allow E. coli M056 to outcompete other microbial species in the complex gut microbiome.↵↵Understanding the specific traits of E. coli M056, particularly its oxygen requirements and temperature preferences, could provide insights into its metabolic pathways and ecological interactions within its host. Additionally, this microbe may serve as a model organism for studying host-microbe interactions, highlighting the importance of microbial adaptability in maintaining a balanced gut ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656415 ADIK00000000.1 Bac0010075 Escherichia coli E1114 "Escherichia coli E1114 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli E1114 possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to occupy various niches within its host.↵↵The ability of E. coli E1114 to adapt to different oxygen levels is crucial for its survival in diverse conditions, such as the gastrointestinal tract of mammals, where oxygen availability can vary significantly. This strain's rod shape and cellular arrangement may contribute to its motility and colonization capabilities, potentially influencing its interactions within the host environment.↵↵As a member of the Enterobacteriaceae family, E. coli E1114 may play a role in nutrient cycling and microbial community dynamics within the gut microbiome, highlighting its ecological significance. Understanding the specific traits of this strain can provide insights into its functional roles in host-associated ecosystems, particularly in relation to its metabolic versatility and adaptability in fluctuating environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 550691 ADIT00000000.1 Bac0010076 Escherichia coli TA447 "Escherichia coli TA447 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is facultatively anaerobic, allowing it to thrive in both the presence and absence of oxygen, which is beneficial for its survival in diverse environments. E. coli TA447 has an optimal growth temperature of 37.0°C, aligning with the typical body temperature of warm-blooded hosts, suggesting a strong association with host organisms.↵↵As a host-associated microbe, E. coli TA447 is likely to inhabit the gastrointestinal tracts of mammals, where it may play a role in nutrient metabolism and gut health. The ability to grow in pairs and singles may facilitate its adaptability within the host environment, allowing for efficient colonization and interaction with the host's microbiome. This adaptability underscores the importance of E. coli TA447 in maintaining the delicate balance of microbial communities in the gastrointestinal tract.↵↵Additionally, the facultative anaerobic nature of E. coli TA447 suggests potential metabolic versatility, enabling it to exploit various substrates depending on the availability of oxygen. This characteristic may contribute to its ecological success within host-associated environments, where fluctuating oxygen levels can occur. Understanding the specific roles of E. coli TA447 in host-associated ecosystems could provide insights into its interactions with both the host and other microbial species." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656447 ADIZ00000000.1 Bac0010077 Lysinibacillus fusiformis ZC1 "Lysinibacillus fusiformis ZC1 is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, classifying it as a sporulating microbe. This organism is a chemoheterotroph, indicating that it obtains its energy through the consumption of organic compounds. Lysinibacillus fusiformis ZC1 has been isolated from multiple habitats, suggesting a versatile adaptability to diverse environmental conditions. ↵↵The sporulation capability of L. fusiformis ZC1 is particularly noteworthy, as it allows the bacterium to withstand adverse environmental stresses, contributing to its survival in varied habitats. This trait may enable it to thrive in environments where nutrients are scarce or conditions are unfavorable, reflecting a strategic ecological adaptation. Overall, the combination of its Gram-positive nature, rod shape, and chemoheterotrophic lifestyle positions Lysinibacillus fusiformis ZC1 as a significant microbe of interest within the broader context of microbial ecology and potential biotechnological applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus fusiformis Positive Rod No 1 Chemoheterotroph Multiple Sporulating 714961 ADJR00000000.1 Bac0010078 Escherichia coli H461 "Escherichia coli H461 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, meaning it can thrive in both the presence and absence of oxygen, which allows it to adapt to a variety of host-associated environments. Its optimal growth temperature is 37.0°C, aligning with the body temperature of many warm-blooded hosts, suggesting a close association with such organisms.↵↵As a member of the Enterobacteriaceae family, E. coli H461 is likely to be part of the normal microbiota in the gastrointestinal tract of mammals, where it plays a role in digestion and nutrient absorption. The adaptability of this strain to different oxygen levels may contribute to its survival and functionality within host environments, making it a versatile organism in microbial communities.↵↵Understanding the physiological traits of E. coli H461 enhances our knowledge of its ecological role and potential implications for host health. The ability to thrive as a facultative anaerobe suggests that this strain may influence gut microbiome dynamics, particularly in fluctuating oxygen conditions, which can occur during metabolic changes within the host. This characteristic underscores the importance of E. coli H461 in maintaining the microbial balance and overall gut health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656403 ADJV00000000.1 Bac0010079 Escherichia coli H420 "Escherichia coli H420 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a characteristic feature of many members of the Enterobacteriaceae family. E. coli H420 has an optimal growth temperature of 37.0°C, aligning with the typical body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat.↵↵The presence of E. coli H420 in host-associated environments underscores its potential role in the microbiota of various organisms, including humans and animals. Its ability to grow under varying oxygen conditions may allow it to occupy diverse niches within the host, contributing to its ecological versatility. Furthermore, the arrangement of cells in pairs or as singles may influence its interactions with the host's immune system and other microbial community members. Overall, E. coli H420 exemplifies the adaptability of certain Escherichia coli strains to host-associated environments, potentially playing a role in nutrient cycling and maintaining homeostasis within the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656400 ADJZ00000000.1 Bac0010080 Ruminococcus albus 8 "Ruminococcus albus 8 is a Gram-positive, nonsporulating cocci that thrives in anaerobic environments, typically associated with host organisms. This microbe is part of the diverse microbiota found in the digestive systems of ruminants, where it plays a critical role in the breakdown of complex carbohydrates. As an anaerobe, R. albus 8 relies on fermentation processes to metabolize substrates available in its host, contributing to the overall efficiency of the digestive process.↵↵The coccoidal shape of R. albus 8 suggests a potential adaptability to its ecological niche, allowing it to form microcolonies that may enhance its stability and interactions with other microbial species. Its host-associated habitat indicates a symbiotic relationship with ruminants, where it likely aids in the degradation of fibrous plant materials, thus facilitating nutrient absorption for the host. The presence of such microorganisms is integral to the health of the ruminant gut ecosystem, highlighting their importance in maintaining host nutrition and microbial balance.↵↵Understanding the role of Ruminococcus albus 8 in the gut microbiome can provide insights into the metabolic pathways involved in fiber digestion and the implications for ruminant health and productivity. The study of this microbe may also shed light on the broader dynamics of microbial interactions within the digestive tracts of herbivorous animals, underscoring the complexity of host-microbe relationships in nutrient cycling." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Hominimerdicola Hominimerdicola alba Positive Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1264 ADKM00000000.2 Bac0010081 Lachnospiraceae bacterium 2_1_46FAA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 2_1_46FAA 2683689 ADLB00000000.2 Bac0010082 Alistipes indistinctus YIT 12060 "Alistipes indistinctus YIT 12060 is a Gram-negative, anaerobic bacterium characterized by its inability to survive in the presence of oxygen. This microbe is part of the diverse human gut microbiota, where it plays a role in the complex ecosystem of the gastrointestinal tract. Although specific metabolic pathways and ecological interactions of A. indistinctus are not provided, its classification as an anaerobe suggests that it thrives in oxygen-limited environments typically found in the human intestine. ↵↵The Gram-negative nature of A. indistinctus indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with other microbial species and host systems. The physiological traits of A. indistinctus underscore its potential contributions to gut health and homeostasis, possibly influencing nutrient absorption and immune responses through its metabolic activities.↵↵Moreover, the presence of A. indistinctus within the gut microbiome may provide insights into the maintenance of microbial diversity and the balance of gut flora, which are crucial for preventing dysbiosis and promoting overall health. Further research into the specific roles and interactions of A. indistinctus in the gut microbiome could shed light on its importance in human health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes indistinctus Negative Anaerobe 742725 ADLD00000000.1 Bac0010083 Hungatella hathewayi WAL-18680 "Hungatella hathewayi WAL-18680 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive as a chemoheterotroph. This microbe is primarily found in the intestinal microflora of animals and exhibits an optimal growth temperature of 37.0 °C, aligning well with the physiological conditions typically present in the gastrointestinal tract.↵↵As an anaerobic organism, H. hathewayi WAL-18680 relies on environments devoid of oxygen to sustain its metabolic processes, which is consistent with its habitat within the animal intestine. The ability to sporulate suggests that H. hathewayi can endure unfavorable conditions, allowing it to persist in a dynamic and competitive microbial community.↵↵The presence of this bacterium in the intestinal microbiota highlights its potential role in the complex interactions that occur within this ecosystem, including nutrient cycling and the maintenance of gut health. Further investigation into its metabolic pathways and interactions with other gut inhabitants may provide insights into its contributions to intestinal homeostasis and its potential applications in biotechnology or medicine." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi Positive Rod No 1 Anaerobic 37 Chemoheterotroph Animal intestinal microflora Sporulating 742737 ADLN00000000.1 Bac0010084 Flavonifractor plautii 1_3_50AFAA "Flavonifractor plautii 1_3_50AFAA is a Gram-positive bacterium characterized as a facultative anaerobe. This versatile microbe can thrive in both aerobic and anaerobic environments, which may contribute to its adaptability in diverse ecological niches. The Gram-positive nature of F. plautii suggests a thick peptidoglycan layer in its cell wall, a structural feature that is often associated with certain environmental resilience and interactions with other microorganisms.↵↵Facultative anaerobes like F. plautii possess metabolic flexibility that allows them to utilize oxygen when available, but they can also switch to fermentation or anaerobic respiration under oxygen-limited conditions. This adaptability not only allows F. plautii to survive in variable environments but may also play a role in its interactions within microbial communities, particularly in nutrient cycling and organic matter degradation.↵↵While specific ecological roles of Flavonifractor plautii 1_3_50AFAA are not elucidated in the available data, its adaptability as a facultative anaerobe may position it as an important player in anaerobic processes, such as those occurring in gut microflora or in decaying organic matter. Understanding the metabolic capabilities of this microbe could provide insights into its contributions to biogeochemical cycles and its potential utility in biotechnological applications involving anaerobic fermentation processes." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii Positive Facultative anaerobe 742738 ADLO00000000.1 Bac0010085 [Clostridium] symbiosum WAL-14163 "[Clostridium] symbiosum WAL-14163 is a Gram-negative bacterium belonging to the genus Clostridium, which is notable for its anaerobic metabolic capabilities. This strain is characterized by its ability to thrive in oxygen-deprived environments, a trait that is typical of many clostridia. While specific metabolic pathways and substrate utilization have not been detailed for this strain, members of the Clostridium genus are often associated with fermentation processes and the production of various short-chain fatty acids.↵↵The Gram-negative nature of [Clostridium] symbiosum WAL-14163 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that may influence its interactions with other microorganisms in its environment. This structural characteristic also has implications for the bacterium's resistance to certain antibiotics and its ability to evade the host immune system, although these aspects require further investigation to fully understand their relevance to this specific strain.↵↵In broader ecological contexts, the presence of [Clostridium] symbiosum WAL-14163 may contribute to microbial community dynamics, particularly in anaerobic environments such as the gastrointestinal tract of various hosts. The interplay between this bacterium and other gut microbiota could potentially enhance nutrient availability or influence metabolic health, highlighting the importance of anaerobic bacteria in maintaining gut homeostasis. Further research into this strain's specific roles and interactions within microbial communities could yield valuable insights into its ecological significance." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Otoolea [Clostridium] symbiosum negative 742740 ADLQ00000000.1 Bac0010086 Odoribacter laneus YIT 12061 "Odoribacter laneus YIT 12061 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbe is part of the diverse community of gut microbiota, contributing to the complex interactions within its ecological niche. While specific metabolic traits and growth conditions of O. laneus YIT 12061 remain to be fully elucidated, its classification as a member of the Odoribacter genus suggests potential roles in the fermentation of dietary fibers and the production of short-chain fatty acids, which are important for intestinal health.↵↵The Gram-negative nature of O. laneus YIT 12061 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may influence its interactions with other gut microbes and the host. This structural feature also suggests inherent resistance to certain antibiotics, which is a common trait among Gram-negative bacteria. ↵↵Further research into O. laneus YIT 12061 may provide valuable insights into its specific functional roles in the gut microbiome, including its contributions to metabolic processes and its potential influences on host physiology. Understanding the ecological significance of this bacterium could enhance our knowledge of microbial diversity and its implications for gut health, ultimately aiding in the development of therapeutic strategies to maintain or restore a balanced microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter laneus negative 742817 ADMC00000000.1 Bac0010087 Turicibacter sanguinis PC909 "Turicibacter sanguinis PC909 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits anaerobic metabolism and is classified as a chemoheterotroph. This microbe thrives optimally at a temperature of 37.0°C, suggesting it may be well-adapted to warm-blooded hosts or environments that mimic such conditions. Its ability to utilize a variety of organic compounds for energy allows it to inhabit multiple ecological niches, although specific habitats have not been detailed.↵↵As an anaerobe, T. sanguinis PC909 is likely to play a role in the anaerobic microbial communities found within various substrates, which may include the gastrointestinal tracts of mammals. The presence of this organism in such environments could indicate its involvement in the fermentation processes that contribute to the overall metabolic activities of the microbiome. Understanding the ecological role of T. sanguinis PC909 may provide insights into its interactions within complex microbial communities and its potential contributions to nutrient cycling in anaerobic ecosystems." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Turicibacter sanguinis Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 702450 ADMN00000000.1 Bac0010088 Bacteroides ovatus SD CMC 3f "Bacteroides ovatus SD CMC 3f is a Gram-negative, anaerobic bacterium that is part of the Bacteroides genus, known for its prominent role in the human gut microbiome. This microbe thrives in environments devoid of oxygen, which is characteristic of many members of the Bacteroides group, allowing it to contribute to the fermentation processes that are essential for the digestion of complex carbohydrates. ↵↵As an anaerobe, B. ovatus SD CMC 3f relies on alternative metabolic pathways that do not involve oxygen, engaging in the fermentation of dietary fibers, which can produce short-chain fatty acids beneficial to host health. These metabolic products play a crucial role in maintaining gut homeostasis and may influence host immune responses, highlighting the importance of B. ovatus SD CMC 3f in human gut ecology.↵↵This strain represents a specific adaptation within its ecological niche, potentially contributing to the breakdown of resistant starches and other polysaccharides, which may have implications for dietary interventions aimed at promoting gut health. Further research into the metabolic capabilities of Bacteroides ovatus SD CMC 3f could provide insights into its functional contributions to the microbiome and its interactions with host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe 702443 ADMO00000000.1 Bac0010089 Acinetobacter haemolyticus ATCC 19194 "Acinetobacter haemolyticus ATCC 19194 is a Gram-negative, aerobic bacterium recognized for its distinct metabolic capabilities and environmental resilience. This species belongs to the genus Acinetobacter, which is characterized by its rod-shaped morphology and ability to thrive in various environments. A. haemolyticus demonstrates a preference for aerobic conditions, indicating its reliance on oxygen for growth and energy production. ↵↵The organism is notable for its hemolytic activity, which suggests that it may possess certain enzymatic pathways that enable it to lyse red blood cells, a trait that may have implications for its interactions within diverse ecological niches. A. haemolyticus is frequently isolated from clinical settings, where it can be a component of the microbial flora, as well as from environmental samples, indicating its versatility and adaptability.↵↵Understanding the traits of A. haemolyticus, particularly its aerobic metabolism and hemolytic properties, provides insights into its potential roles in various environments, ranging from human-associated habitats to broader ecological contexts. This adaptability may facilitate its survival and persistence in fluctuating conditions, making it a relevant subject for further study in microbiological research and environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 707232 ADMT00000000.1 Bac0010090 Mycoplasmopsis alligatoris A21JP2 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis alligatoris 747682 ADNC00000000.1 Bac0010091 Brevibacterium mcbrellneri ATCC 49030 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium mcbrellneri aerobic 585530 ADNU00000000.1 Bac0010092 Clostridioides difficile NAP08 "Clostridioides difficile NAP08 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains, pairs, or singles. This anaerobic microbe thrives at an optimal temperature of 37.0°C, making it well-suited to the warm environments of its hosts. As a chemoorganotroph, C. difficile NAP08 derives its energy from organic compounds, which aligns with its habitat as a host-associated organism.↵↵C. difficile is particularly notable for its association with the gastrointestinal tract, where it can influence the microbial community dynamics. The characteristic anaerobic metabolism of this organism allows it to colonize the oxygen-poor niches of the intestines, where it may play a role in the degradation of complex carbohydrates and other organic materials. This metabolic capability not only enables its survival but may also impact the overall health of the host by influencing gut microbiota composition and function.↵↵Understanding the specific traits of Clostridioides difficile NAP08, particularly its anaerobic lifestyle and energy acquisition methods, provides insight into its potential roles within the gut ecosystem and underscores the complex interactions that occur between host-associated microbes. Further research into its ecological interactions may illuminate the broader implications of this organism in health and disease contexts." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles 525259 ADNX00000000.1 Bac0010093 Actinobacillus pleuropneumoniae serovar 10 str. D13039 "Actinobacillus pleuropneumoniae serovar 10 str. D13039 is a Gram-negative, rod-shaped bacterium characterized by its arrangement in chains, pairs, or singles. This facultative anaerobe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in warm-blooded hosts. A. pleuropneumoniae is predominantly associated with host environments, indicating its role as a pathogen or commensal organism within specific animal populations.↵↵The ability of A. pleuropneumoniae to exist in various cell arrangements (chains, pairs, or singles) may confer advantages in colonization and adaptation to different niches within a host. This trait could facilitate interactions with the host immune response or influence its survival in varying microenvironments. The facultative anaerobic nature of this bacterium suggests that it can metabolize in both aerobic and anaerobic conditions, potentially enhancing its resilience in fluctuating oxygen levels within host tissues.↵↵Insights into the ecological or biological implications of A. pleuropneumoniae serovar 10 str. D13039 may involve its adaptability to host-associated environments, where it could play significant roles in microbial communities. Understanding this adaptability may provide further context on its ecological interactions and potential impacts on host health, especially in livestock settings where it may contribute to disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles 754259 ADOJ00000000.1 Bac0010094 Escherichia coli MS 198-1 "Escherichia coli MS 198-1 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli MS 198-1 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, allowing it to exploit various ecological niches within its host.↵↵The Gram-negative cell wall structure of E. coli MS 198-1 contributes to its resilience and adaptability in diverse physiological conditions, a trait common among members of the Enterobacteriaceae family. The ability to exist in pairs or as single cells may influence its interactions with host tissues, potentially affecting its colonization dynamics and nutrient acquisition strategies.↵↵Understanding the traits of E. coli MS 198-1 helps elucidate its role in the microbiome of its host and its capabilities in various metabolic pathways. This strain's facultative anaerobic nature may facilitate its survival in fluctuating oxygen environments within the host, allowing it to adapt to changes in local microenvironments such as those found in the gastrointestinal tract. This adaptability underscores the ecological significance of E. coli MS 198-1 in host-associated microbiomes, where it may play a role in nutrient cycling and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 749549 ADTJ00000000.1 Bac0010095 Escherichia coli MS 84-1 "Escherichia coli MS 84-1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its common hosts, indicating its adaptation to a host-associated habitat. E. coli MS 84-1 is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments, which enhances its versatility in various biological contexts.↵↵The ability of E. coli MS 84-1 to inhabit host-associated environments suggests a potential role in symbiotic relationships or interactions with the host microbiome. Its facultative anaerobic nature may also contribute to its adaptability in fluctuating oxygen conditions within the host, possibly facilitating metabolic processes that are advantageous for survival and persistence. Overall, the traits of E. coli MS 84-1 underscore its adaptability and significance in host-associated ecosystems, where it may play an important role in nutrient cycling and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 749533 ADTK00000000.1 Bac0010096 Escherichia coli MS 115-1 "Escherichia coli MS 115-1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli MS 115-1 has the metabolic flexibility to utilize oxygen when available, but can also grow in environments devoid of oxygen, adapting to varying conditions within its host.↵↵The ability of E. coli MS 115-1 to inhabit host-associated environments suggests a potential role in symbiotic relationships, where it may contribute to nutrient metabolism or intestinal health. This adaptability and metabolic versatility underscore the importance of E. coli in diverse microbial ecosystems, particularly in the gastrointestinal tract of mammals, where it can interact with other microbial species and influence host physiology. Understanding the specific traits of E. coli MS 115-1 may provide insights into its functional roles within these complex biological systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 749537 ADTL00000000.1 Bac0010097 Escherichia coli MS 69-1 "Escherichia coli MS 69-1 is a Gram-negative, rod-shaped bacterium that typically presents in pairs or singly. This strain thrives optimally at a temperature of 37.0 °C, which is consistent with its adaptation to host-associated habitats. As a facultative anaerobe, E. coli MS 69-1 can grow in both aerobic and anaerobic environments, allowing it to exploit a variety of ecological niches within the host. ↵↵The ability of E. coli MS 69-1 to thrive in the complex environment of the host suggests its potential role in various biological processes, including nutrient metabolism and microbiome dynamics. Its facultative anaerobic nature enables it to adapt to fluctuating oxygen levels, which may be particularly advantageous in the gastrointestinal tract where oxygen availability can vary. Understanding the specific interactions of E. coli MS 69-1 within its host could provide valuable insights into microbial ecology and the intricate balance of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 749531 ADTP00000000.1 Bac0010098 Novacetimonas hansenii ATCC 23769 GXY0071 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Novacetimonas Novacetimonas hansenii 436 ADTV00000000.1 Bac0010099 Escherichia coli 2362-75 "Escherichia coli 2362-75 is a Gram-negative, rod-shaped bacterium that typically exists in singles or pairs. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the average body temperature of warm-blooded hosts, where it is primarily found. As a facultative anaerobe, E. coli 2362-75 is capable of growing in both the presence and absence of oxygen, allowing it to adapt to various environments within its host.↵↵This strain's habitat is classified as host-associated, indicating a close relationship with its biological host, which may influence its metabolic capabilities and ecological roles. Given that E. coli is known for its diverse functions within the gastrointestinal tract, such as aiding in digestion and synthesizing certain vitamins, E. coli 2362-75 may play a similarly supportive role in its specific ecological niche.↵↵The adaptability of E. coli 2362-75 to varying oxygen levels and its optimal growth temperature suggest it could be well-suited for colonizing different environments within its host, potentially contributing to the maintenance of microbial homeostasis. Understanding the traits of E. coli 2362-75 may provide insights into its interactions within the microbiome and its possible effects on host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 670897 ADUL00000000.1 Bac0010100 Nocardioidaceae bacterium Broad-1 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioidaceae bacterium Broad-1 408672 ADVI00000000.1 Bac0010101 Fusobacterium nucleatum subsp. nucleatum ATCC 23726 "Fusobacterium nucleatum subsp. nucleatum ATCC 23726 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This subspecies is associated with host organisms, indicating a potential symbiotic or pathogenic relationship within specific biological contexts. As an anaerobe, F. nucleatum subsp. nucleatum relies on the absence of oxygen for its metabolic processes, which is characteristic of many bacteria that inhabit the human oral cavity and gastrointestinal tract.↵↵The unique morphological and physiological traits of F. nucleatum subsp. nucleatum contribute to its ecological niche, where it may play a role in the complex microbial communities found in host-associated environments. Its ability to flourish at the human body temperature suggests an adaptation to the warm, nutrient-rich surroundings of the host, potentially impacting host health and microbiome dynamics. Understanding the characteristics of this subspecies is crucial for further studies on its role within human-associated microbiomes, particularly in relation to oral health and systemic conditions." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 525283 ADVK00000000.1 Bac0010102 Oscillochloris trichoides DG-6 Bacillati Chloroflexota Chloroflexia Chloroflexales Oscillochloridaceae Oscillochloris Oscillochloris trichoides 765420 ADVR00000000.1 Bac0010103 Afipia sp. 1NLS2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia sp. 1NLS2 666684 ADVZ00000000.1 Bac0010104 Segatella baroniae B14 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella baroniae 752555 ADWO00000000.1 Bac0010105 Escherichia coli MS 124-1 "Escherichia coli MS 124-1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to host-associated environments, such as the intestines of warm-blooded animals. As a facultative anaerobe, E. coli MS 124-1 possesses the metabolic versatility to grow in both aerobic and anaerobic conditions, allowing it to exploit a variety of niches within its host habitat.↵↵The presence of this bacterium in host-associated environments suggests a role in the complex microbial communities found within the gastrointestinal tract. E. coli strains are known to contribute to the digestion of nutrients and the maintenance of gut health, although their exact functions can vary widely among different strains. Given its facultative anaerobic capability, E. coli MS 124-1 may interact dynamically with both aerobic and anaerobic microorganisms in its environment, potentially influencing local metabolic processes and community dynamics. This adaptability underscores the ecological significance of E. coli MS 124-1 within host-associated microbiomes, where it may engage in competitive interactions or mutualistic relationships with other microbial inhabitants." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 679205 ADWT00000000.1 Bac0010106 Pseudomonas savastanoi pv. glycinea str. race 4 "Pseudomonas savastanoi pv. glycinea str. race 4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotroph, this microbe derives its energy from organic compounds, reflecting its adaptability to diverse environments. It is classified as an aerobic organism, necessitating oxygen for its metabolic processes. ↵↵The habitat of Pseudomonas savastanoi pv. glycinea str. race 4 is notably versatile, suggesting that it can thrive in various ecological niches, although specific environmental conditions have not been detailed. Its ability to occupy multiple habitats may contribute to its resilience and survival in fluctuating conditions, which is a characteristic of many members of the Pseudomonas genus. ↵↵Understanding the ecological roles and interactions of Pseudomonas savastanoi pv. glycinea str. race 4 could provide insights into its potential impacts on plant health and soil microbiomes, reinforcing the significance of this bacterium in agricultural contexts. Its metabolic versatility and aerobic nature may also facilitate its involvement in nutrient cycling within its habitats, highlighting its potential contributions to ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 875330 ADWY00000000.1 Bac0010107 Cutibacterium modestum HL044PA1 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium modestum 765109 ADZU00000000.1 Bac0010108 Pseudomonas syringae pv. japonica str. M301072 "Pseudomonas syringae pv. japonica str. M301072 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells. This strain is categorized as a heterotrophic organism, utilizing organic compounds as its energy source, which allows it to thrive in diverse habitats. As an aerobic microbe, it requires oxygen for its metabolic processes, positioning it within environments that support aerobic life.↵↵The ability of Pseudomonas syringae pv. japonica str. M301072 to adapt to multiple habitats suggests a versatile ecological role, potentially allowing it to exploit various niches in both soil and plant environments. This adaptability may contribute to its interactions with various organic substrates and its potential involvement in nutrient cycling processes within these ecosystems. Understanding the specific environmental conditions and interactions of this strain could provide further insights into its ecological significance and functional roles in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 629262 AEAH00000000.1 Bac0010109 Pseudomonas syringae pv. pisi str. 1704B "Pseudomonas syringae pv. pisi str. 1704B is a Gram-negative, rod-shaped bacterium characterized by its single-cell arrangement and aerobic metabolism. As a heterotroph, this strain relies on organic compounds as its energy source, enabling it to thrive in diverse habitats where organic material is available. The ability to grow in multiple environments suggests a versatile adaptability, which is a notable trait of the Pseudomonas genus. ↵↵The aerobic nature of P. syringae pv. pisi str. 1704B indicates that it requires oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. This strain exemplifies the ecological significance of Pseudomonas species, which are known to play critical roles in nutrient cycling and plant-microbe interactions. The physiological traits of P. syringae pv. pisi str. 1704B can contribute to its potential applications in biocontrol and bioremediation, highlighting the importance of understanding its metabolic capabilities within various ecological contexts. Overall, the adaptability of this bacterium to different environments underscores the ecological resilience of Pseudomonas species and their potential utility in agricultural and environmental settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 629263 AEAI00000000.1 Bac0010110 Pseudomonas fluorescens WH6 WH6_53 "Pseudomonas fluorescens WH6 (WH6_53) is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism that thrives in a variety of habitats, reflecting its adaptability to diverse environmental conditions. Optimal growth occurs at 25.0°C, indicating a preference for moderate temperatures, which may be relevant for its ecological niches.↵↵As an aerobic organism, Pseudomonas fluorescens WH6 requires oxygen for its metabolic processes, which aligns with the behaviors observed in many Pseudomonas species known for their role in nutrient cycling and decomposition. The ability of this strain to utilize a range of organic compounds as energy sources under aerobic conditions suggests a versatile metabolic capacity that may enable it to exploit various ecological niches.↵↵The ecological significance of Pseudomonas fluorescens WH6 may be particularly pronounced in environments where organic matter decomposition is critical, as its metabolic activities could contribute to soil health and nutrient availability. The flexibility in habitat and energy sources underscores its potential role in bioremediation processes, where it may assist in breaking down pollutants in contaminated environments. This adaptability highlights the importance of Pseudomonas fluorescens WH6 in maintaining ecological balance and supporting microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 AEAZ00000000.1 Bac0010111 Agrobacterium sp. ATCC 31749 AGT95 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. ATCC 31749 82789 AECL00000000.1 Bac0010112 Finegoldia magna ACS-171-V-Col3 "Finegoldia magna ACS-171-V-Col3 is a Gram-positive, cocci-shaped bacterium that thrives in anaerobic environments. This species is known to inhabit multiple habitats, indicating its versatility and adaptability in various ecological niches. The anaerobic nature of Finegoldia magna suggests that it plays a role in environments where oxygen is limited, such as in the human microbiota or in decaying organic matter.↵↵As a member of the Firmicutes phylum, Finegoldia magna likely contributes to important biochemical processes, including fermentation and the breakdown of complex organic materials. Its resilience in anaerobic conditions may facilitate its survival and proliferation in diverse substrates, ranging from soil to the gastrointestinal tract of animals. Understanding the ecological roles of this microbe can provide insights into its potential contributions to nutrient cycling and its interactions within microbial communities.↵↵Further investigation into Finegoldia magna ACS-171-V-Col3 may reveal its specific functions in nutrient utilization and its relationships with other microbial species, which could enhance our understanding of microbial dynamics in both natural and human-associated ecosystems." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 768713 AECM00000000.1 Bac0010113 Megasphaera micronuciformis F0359 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera micronuciformis anaerobic 706434 AECS00000000.1 Bac0010114 Faecalibacterium cf. prausnitzii KLE1255 "Faecalibacterium cf. prausnitzii KLE1255 is a Gram-positive, rod-shaped bacterium that exhibits anaerobic metabolism and functions as a chemoheterotroph. This strain is nonsporulating and thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions of the human gut, where it is commonly found. ↵↵F. cf. prausnitzii is recognized for its role in the gut microbiome, contributing to the maintenance of intestinal health and homeostasis. It is prevalent in various habitats, which suggests a level of ecological versatility. The anaerobic nature of this microbe indicates its adaptation to environments devoid of oxygen, further underscoring its specialization in digestive ecosystems.↵↵The presence of F. cf. prausnitzii in the gut microbiota has been associated with beneficial effects, such as the production of short-chain fatty acids, which are essential for gut health and may influence immune responses. The adaptability of this microorganism to multiple habitats can potentially provide insight into its role in microbial community dynamics and its contributions to gut health maintenance. Understanding the metabolic capabilities and ecological interactions of F. cf. prausnitzii KLE1255 could enhance knowledge regarding the modulation of gut microbiota and its implications for human health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 748224 AECU00000000.1 Bac0010115 Selenomonas artemidis F0399 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas artemidis anaerobic 970 AECV00000000.1 Bac0010116 Actinomyces sp. oral taxon 171 str. F0337 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 171 706439 AECW00000000.1 Bac0010117 Prevotella disiens FB035-09AN "Prevotella disiens FB035-09AN is a Gram-negative, anaerobic bacterium known for its role in various ecological niches, particularly within the human microbiome. As a member of the Prevotella genus, this organism thrives in environments devoid of oxygen, relying on anaerobic metabolic pathways for energy production. The Gram-negative cell wall structure of P. disiens is characterized by a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which may play a role in its interactions with host organisms and other microbial communities.↵↵The anaerobic nature of P. disiens suggests that it is adapted to colonize specific habitats where oxygen levels are low, such as the gastrointestinal tract and the oral cavity. Its presence in these environments may contribute to the complex balance of microbial communities, influencing host health and disease states. Understanding the metabolic capabilities and ecological roles of P. disiens can provide valuable insights into the dynamics of microbial communities and their potential impacts on human health.↵↵Additionally, the ability of P. disiens to thrive in anaerobic conditions may facilitate its involvement in biochemical processes such as fermentation, which can influence nutrient availability and metabolic interactions within its ecosystem. This anaerobic lifestyle underscores the importance of this bacterium in maintaining the stability and functionality of microbial consortia in anaerobic environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella disiens Negative Anaerobe 866771 AEDO00000000.1 Bac0010118 Veillonella atypica ACS-134-V-Col7a "Veillonella atypica ACS-134-V-Col7a is a Gram-negative, anaerobic bacterium that exhibits specific growth requirements and metabolic characteristics typical of its genus. As an anaerobe, V. atypica thrives in environments devoid of oxygen, relying on fermentation processes for energy production. This metabolic capability allows it to inhabit various anaerobic niches, particularly in the human oral cavity and gastrointestinal tract, where it can contribute to the complex microbial communities present in these ecosystems.↵↵The Gram-negative nature of V. atypica indicates that its cell wall structure consists of a thin peptidoglycan layer surrounded by an outer membrane, which may affect its interaction with the host's immune system and its resistance to certain antibiotics. The presence of this bacterium in the human microbiome highlights its potential role in maintaining microbial balance and possibly influencing host health through metabolic byproducts.↵↵Notably, V. atypica is known to participate in the degradation of lactate, a product often generated by other microbiota. This suggests that V. atypica may play a significant role in the metabolic cross-feeding processes among microbial communities, thereby contributing to the overall stability and function of anaerobic ecosystems. Further investigations into its interactions with other microorganisms and its contributions to microbial metabolism could provide valuable insights into its ecological significance." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella atypica Negative Anaerobe 866778 AEDS00000000.1 Bac0010119 Streptococcus mitis SK564 "Streptococcus mitis SK564 is a Gram-positive bacterium characterized by its cocci shape and its arrangement in chains and pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is primarily host-associated, suggesting a close relationship with its host organisms.↵↵As a member of the Streptococcus genus, S. mitis SK564 likely plays a role in the complex microbial communities found in the human oral cavity and other mucosal surfaces. The ability to grow in varying oxygen levels may confer a competitive advantage in these niches, where oxygen availability can fluctuate. ↵↵Notably, the chain and pair arrangement of S. mitis SK564 could facilitate cell-to-cell interactions that are important for communication and cooperation within microbial communities. This trait may also have implications for its persistence in host-associated environments, potentially influencing its interactions with the host immune system and other microbial residents. Further research into the ecological roles and functional capacities of S. mitis SK564 is warranted to better understand its contributions to host-associated microbiomes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 585203 AEDU00000000.1 Bac0010120 Streptococcus infantis SK1302 "Streptococcus infantis SK1302 is a Gram-positive bacterium characterized by its coccoid shape and facultative anaerobic metabolism. The organism is part of the Streptococcus genus, which is known for its diverse range of species, many of which inhabit various niches within the human microbiome and other environments. As a facultative anaerobe, S. infantis SK1302 possesses the ability to thrive in both aerobic and anaerobic conditions, allowing it to adapt to different environments, potentially including the human gastrointestinal tract.↵↵Streptococcus species are typically recognized for their role in fermentation processes, and S. infantis SK1302 may contribute to the fermentation of carbohydrates, producing lactic acid as a metabolic byproduct. This lactic acid production can play a significant role in maintaining the pH balance within the microbiome, thereby influencing the growth of other microbial populations and the overall health of the host.↵↵The presence of S. infantis SK1302 in various habitats may indicate its potential role in nutrient cycling and microbial community dynamics. Its ability to adapt to varying oxygen levels suggests that it could be involved in interactions with both aerobic and anaerobic microorganisms, contributing to the stability and resilience of microbial ecosystems. Further research may elucidate its specific functions and interactions within these communities, highlighting its ecological significance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe 871237 AEDY00000000.1 Bac0010121 Corynebacterium accolens ATCC 49726 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens 862512 AEED00000000.1 Bac0010122 Selenomonas sp. oral taxon 149 str. 67H29BP Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 149 864563 AEEJ00000000.1 Bac0010123 Streptococcus equinus ATCC 700338 "Streptococcus equinus ATCC 700338 is a Gram-positive coccus that exhibits a facultative anaerobic growth pattern. This bacterium is characterized by its spherical shape and ability to thrive in both aerobic and anaerobic environments, allowing it to adapt to various ecological niches. Streptococcus equinus belongs to a genus known for its diverse metabolic capabilities, which may contribute to its survival in different habitats, including the gastrointestinal tracts of animals.↵↵The facultative anaerobic nature of S. equinus ATCC 700338 suggests that it can utilize oxygen when available but is also capable of fermentation in its absence, a trait that enhances its adaptability to fluctuating environmental conditions. This flexibility may play a significant role in its ecological interactions, particularly in microbiomes where oxygen levels can vary.↵↵Moreover, the presence of this organism in certain environments might contribute to the overall microbial community dynamics, influencing nutrient cycling and the maintenance of gut health in host organisms. Understanding the traits of Streptococcus equinus ATCC 700338 could provide insights into the functional roles of such bacteria in their respective ecosystems, particularly in relation to their interactions with other microbial species and their contributions to the host's microbiota." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe 864569 AEEL00000000.1 Bac0010124 Bifidobacterium dentium ATCC 27679 "Bifidobacterium dentium ATCC 27679 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, primarily associated with hosts. This species is part of the diverse group of bifidobacteria, which are notable for their role in the human gut microbiota, where they contribute to the maintenance of intestinal health and balance. ↵↵B. dentium is often found in the human oral cavity and gastrointestinal tract, indicating its adaptation to host-associated habitats. Its anaerobic requirement suggests a metabolic lifestyle that relies on fermentation processes, utilizing carbohydrates and producing short-chain fatty acids, which are beneficial for gut homeostasis. ↵↵Research has indicated that B. dentium can interact with other gut microbiota components, potentially influencing the overall microbial community structure. This interaction may be significant in modulating the host's immune response and intestinal health. Furthermore, the presence of B. dentium in the oral cavity highlights its potential role in oral health, as it may contribute to the prevention of pathogenic bacterial colonization and the maintenance of a balanced microbial ecosystem.↵↵In summary, the unique traits of Bifidobacterium dentium ATCC 27679 underscore its importance in host-associated habitats, particularly in the gut and oral microbiomes, where it may play a critical role in promoting health and preventing dysbiosis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium Positive Rod No 1 1 Anaerobic Mesophilic HostAssociated Free living Nonsporulating 871562 AEEQ00000000.1 Bac0010125 Candidatus Nitrosarchaeum limnium SFB1 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Candidatus Nitrosarchaeum limnium 886738 AEGP00000000.1 Bac0010126 Escherichia coli M863 "Escherichia coli M863 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli M863 has an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting its adaptation to a host-associated habitat. ↵↵The facultative anaerobic nature of E. coli M863 indicates that it can metabolize in the presence or absence of oxygen, providing it with a versatile ecological niche within host organisms. This metabolic flexibility may enable it to colonize various environments within the host, such as the intestines, where oxygen levels can vary. ↵↵In summary, the adaptation of E. coli M863 to host-associated habitats and its metabolic versatility underscore its potential role in the complex microbial communities within mammalian hosts. Understanding these traits can provide insights into the ecological roles of E. coli strains in health and disease, particularly in relation to their interactions with the host's immune system and microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656420 AEHZ00000000.1 Bac0010127 Dermacoccus sp. Ellin185 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Dermacoccus Dermacoccus sp. Ellin185 188626 AEIQ00000000.1 Bac0010128 Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio caribbeanicus 701175 AEIU00000000.1 Bac0010129 Aggregatibacter actinomycetemcomitans serotype e str. SC1083 "Aggregatibacter actinomycetemcomitans serotype e str. SC1083 is a nonsporulating, Gram-negative rod bacterium that thrives in the gut of its host, exhibiting a facultative anaerobic lifestyle. This microbe is classified as a chemoheterotroph, deriving its energy from organic compounds within its environment. The optimal growth temperature for A. actinomycetemcomitans serotype e str. SC1083 is 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting a specialized adaptation for life within the gastrointestinal tract.↵↵The presence of A. actinomycetemcomitans in the gut may indicate its role in the complex microbial communities that contribute to the host's digestive processes. Its facultative anaerobic nature allows it to thrive in varying oxygen conditions, which is a characteristic advantageous for survival in the dynamic environment of the gut. While the specific ecological interactions and potential contributions of this strain to host health or disease are not detailed in the provided traits, its presence suggests a possible involvement in gut microbiota dynamics. Further investigation into its interactions with other gut microorganisms could illuminate its ecological role in maintaining gut homeostasis or its response to shifts in the gut environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 907488 AEJM00000000.1 Bac0010130 Aggregatibacter actinomycetemcomitans serotype b str. SCC1398 "Aggregatibacter actinomycetemcomitans serotype b str. SCC1398 is a nonsporulating, Gram-negative rod that thrives at an optimal temperature of 37.0°C and is classified as a facultative anaerobe. This microbe exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources. Its natural habitat is primarily within the host gut, where it may play a role in the complex microbiota.↵↵The combination of its Gram-negative cell wall structure and rod-shaped morphology suggests a potential for specific interactions with host tissues and other microbial species. As a facultative anaerobe, A. actinomycetemcomitans serotype b str. SCC1398 can adapt to varying oxygen levels, which may facilitate its survival in diverse microenvironments within the gut. ↵↵This adaptability, along with its metabolic capabilities, may contribute to its ecological niche, potentially influencing gut health and microbial community dynamics. Understanding the interactions and roles of A. actinomycetemcomitans serotype b str. SCC1398 within the gut microbiome could provide insights into its contributions to host physiology and the maintenance of microbial homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 907491 AEJP00000000.2 Bac0010131 Streptococcus parasanguinis F0405 "Streptococcus parasanguinis F0405 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, which suggests a versatile metabolic capability that may enhance its survival in diverse host-associated habitats. ↵↵This bacterium is part of the normal flora found in the oral cavity, where it plays a role in maintaining microbial balance. Its ability to grow in the presence of oxygen while also thriving in its absence indicates that it may adapt to varying conditions within the oral ecosystem, potentially influencing other microbial communities. ↵↵Given its host-associated habitat, Streptococcus parasanguinis F0405 may interact closely with the human immune system and other microbial residents, suggesting a complex interplay that can affect oral health. The presence of this microbe in the oral microbiome implies potential implications for dental health, particularly in the context of biofilm formation and its contribution to the overall microbial diversity. Understanding the specific roles and interactions of Streptococcus parasanguinis F0405 within the oral cavity is essential for elucidating its function in the health and disease of the host." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 905067 AEKM00000000.1 Bac0010132 Streptococcus vestibularis F0396 "Streptococcus vestibularis F0396 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic properties. This organism is notable for its ability to thrive in both aerobic and anaerobic environments, which may contribute to its adaptability in various ecological niches. ↵↵As a member of the Streptococcus genus, S. vestibularis F0396 shares common characteristics with other streptococci, including its spherical morphology and potential involvement in diverse microbial communities. While specific ecological roles or associations with host organisms for this strain have not been detailed, the presence of facultative anaerobic metabolism suggests that it may play a role in environments where oxygen levels fluctuate, such as the oral cavity or gastrointestinal tract. ↵↵The ability of S. vestibularis F0396 to survive in varying oxygen conditions could facilitate its interactions with other microorganisms, possibly contributing to biofilm formation or influencing the local microbiome dynamics. Thus, this bacterium may serve as a pivotal player in maintaining microbial balance in its habitats, highlighting the importance of further research to elucidate its ecological interactions and potential contributions to its environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus vestibularis Positive Cocci Facultative anaerobe 904306 AEKO00000000.1 Bac0010133 Haladaptatus paucihalophilus DX253 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus paucihalophilus 797209 AEMG00000000.1 Bac0010134 Escherichia coli M114 "Escherichia coli M114 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments. It thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat.↵↵E. coli M114's Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, contributes to its resilience in diverse environments and may influence its interactions with the host's immune system. The arrangement of cells in pairs or singles may facilitate rapid colonization and adaptability in various niches within a host organism. ↵↵The facultative anaerobic nature of E. coli M114 allows it to exploit different metabolic pathways depending on the availability of oxygen, which can provide a competitive advantage in fluctuating environments within the gastrointestinal tract and other host-associated habitats. This metabolic versatility highlights the ecological importance of E. coli M114 in microbial communities, where it may play roles in nutrient cycling and the maintenance of gut homeostasis. Understanding the traits of this strain can offer insights into the broader ecological dynamics of host-associated microbial populations." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 656416 AEMV00000000.1 Bac0010135 Campylobacter concisus UNSWCD "Campylobacter concisus UNSWCD is a Gram-negative bacterium characterized by its distinctive spirilla shape and tendency to form chains or exist as single cells. This microbe is classified as microaerophilic, indicating that it requires reduced oxygen levels for optimal growth, which aligns with its habitat in host-associated environments. ↵↵C. concisus UNSWCD has been identified in various host-associated contexts, suggesting a potential role in the microbiota of its host organisms. The specific ecological niches it occupies may contribute to its interactions with the host, potentially influencing host health or disease dynamics. Understanding the precise environmental conditions and host relationships of C. concisus UNSWCD is crucial for further investigations into its biological significance. Given its microaerophilic nature, it may thrive in environments where oxygen levels are limited, possibly implicating it in specific physiological processes within its host. This trait could play a role in nutrient acquisition or microbial competition within the host-associated microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 929793 AENQ00000000.1 Bac0010136 Dialister micraerophilus UPII 345-E Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister micraerophilus 910314 AENT00000000.1 Bac0010137 Alistipes sp. HGB5 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. HGB5 908612 AENZ00000000.1 Bac0010138 Parascardovia denticolens DSM 10105 = JCM 12538 strain DSM 10105 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Parascardovia Parascardovia denticolens 78258 AEON00000000.1 Bac0010139 Hoylesella oralis ATCC 33269 "Hoylesella oralis ATCC 33269 is a Gram-negative bacterium characterized by its unique morphological and physiological traits. As part of the diverse microbial community found in the oral cavity, it is notable for its potential role in oral microbiota dynamics. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this group of bacteria and may confer specific adaptability to its ecological niche.↵↵The strain ATCC 33269 has been maintained in culture collections, making it available for further study and characterization. While the specific metabolic processes and growth conditions of Hoylesella oralis ATCC 33269 have not been detailed in the provided traits, its classification within the oral microbiome suggests that it may engage in symbiotic relationships with other oral microorganisms. This relationship could be significant in maintaining oral health or contributing to disease processes when the balance of the microbiome is disturbed.↵↵Understanding the traits of Hoylesella oralis ATCC 33269 adds to our knowledge of the complexity of oral microbial communities and highlights the importance of Gram-negative bacteria in human health. Future research could elucidate its specific interactions within the oral microbiota, potentially revealing its role in health and disease contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella oralis negative 873533 AEPE00000000.2 Bac0010140 Campylobacter upsaliensis JV21 "Campylobacter upsaliensis JV21 is a Gram-negative bacterium characterized by its spiral or curved rod shape, which is typical of the Campylobacter genus. This microbe is part of a group that is known for its microaerophilic growth requirements, meaning it thrives in environments with lower oxygen concentrations than that of the atmosphere. ↵↵As a member of the Campylobacter genus, C. upsaliensis JV21 likely possesses motility attributes facilitated by a single polar flagellum, which aids in its movement through viscous environments such as the intestinal tract. This trait is significant for its ecological interactions, particularly in relation to its potential hosts. ↵↵C. upsaliensis has been studied for its associations with various animal species, which may serve as reservoirs, although specific host interactions for the JV21 strain remain to be elucidated. The organism’s Gram-negative structure suggests the presence of an outer membrane containing lipopolysaccharides, which can play roles in virulence and immune system evasion.↵↵Understanding the traits of Campylobacter upsaliensis JV21 contributes to the broader knowledge of Campylobacter species, which are significant in veterinary and public health contexts. Furthermore, the adaptability of C. upsaliensis JV21 to microaerophilic conditions may provide insights into its survival mechanisms in diverse environments, including potential interactions within gut microbiomes. This adaptability underscores the ecological versatility of Campylobacter species and their roles in various ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter upsaliensis negative 888826 AEPU00000000.1 Bac0010141 Lachnoanaerobaculum saburreum DSM 3986 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Lachnoanaerobaculum saburreum 887325 AEPW00000000.1 Bac0010142 Mobiluncus holmesii ATCC 35242 "Mobiluncus holmesii ATCC 35242 is a rod-shaped bacterium characterized as Gram-negative and non-spore-forming, with an anaerobic oxygen requirement. This microbe belongs to the genus Mobiluncus, which is known for its association with certain environments and hosts, though specific ecological roles for M. holmesii remain to be fully elucidated.↵↵The anaerobic nature of M. holmesii suggests that it thrives in low-oxygen conditions, which may influence its habitat preferences and interactions with other microorganisms. As a non-spore-forming organism, M. holmesii likely relies on other mechanisms for survival and persistence in its environment, rather than forming dormant spores that can withstand extreme conditions.↵↵The combination of these traits indicates that M. holmesii may play a role in anaerobic ecosystems, possibly contributing to microbial communities in environments such as the gastrointestinal tracts of animals or in other oxygen-depleted niches. Further research could reveal insights into its metabolic pathways and possible interactions with other microbes, which may inform our understanding of its ecological significance. Understanding the ecological role of M. holmesii could also provide a broader context for its interactions within the microbiota of various hosts, potentially influencing health and disease dynamics." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus holmesii Gram-negative / Gram-positive rod motile anaerobic non-spore-forming 887899 AEPZ00000000.1 Bac0010143 Pseudoramibacter alactolyticus ATCC 23263 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Pseudoramibacter Pseudoramibacter alactolyticus anaerobic 887929 AEQN00000000.1 Bac0010144 Streptococcus australis ATCC 700641 "Streptococcus australis ATCC 700641 is a Gram-positive, nonsporulating coccus that exhibits characteristics typical of a facultative anaerobe and functions as a chemoheterotroph. This organism can thrive in various habitats, indicating its adaptability to different environmental conditions. As a facultative anaerobe, S. australis can utilize oxygen for respiration when available but also has the capability to survive in oxygen-depleted environments, employing fermentation pathways for energy production.↵↵The cocci morphology of S. australis is consistent with other members of the Streptococcus genus, which are typically found in clusters or chains. This arrangement may play a role in its ecological interactions and potential associations with other microorganisms in its natural habitats. ↵↵Given its diverse habitat and metabolic flexibility, S. australis may contribute to various biogeochemical processes, particularly in environments where organic substrates are abundant. Its ability to thrive in varying oxygen levels suggests a versatile ecological role, potentially influencing microbial community dynamics and nutrient cycling. Understanding the ecological functions of S. australis in its native environments could provide insights into its potential uses in biotechnology or ecological management." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus australis Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 888833 AEQR00000000.1 Bac0010145 Neisseria meningitidis H44/76 "Neisseria meningitidis H44/76 is a Gram-negative cocci bacterium that typically occurs in pairs. This microbe thrives optimally at a temperature of 35.0°C and is classified as an aerobic organism, requiring oxygen for growth and metabolism. N. meningitidis is primarily associated with host environments, indicating its adaptation to living within the biological systems of its hosts. ↵↵The pairing arrangement of the cocci is characteristic of the Neisseria genus, which is known for its distinct morphological features. The Gram-negative nature of this organism suggests a complex cell wall structure that includes an outer membrane containing lipopolysaccharides, which may play roles in its interactions within host tissues.↵↵Given its habitat and oxygen requirements, N. meningitidis H44/76 is likely to thrive in conditions that mimic the human host environment, which can provide insights into its ecological niche. Understanding the specific adaptations of this strain within host-associated habitats could contribute to the broader knowledge of microbial behavior in similar contexts, such as its potential role in human microbiomes or its response to environmental changes within host systems." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 909420 AEQZ00000000.1 Bac0010146 Shigella boydii ATCC 9905 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella genomosp. SF-2015 932676 AERN00000000.1 Bac0010147 Staphylococcus simiae CCM 7213 = CCUG 51256 strain CCM 7213 "Staphylococcus simiae CCM 7213 (also designated CCUG 51256) is a Gram-positive, non-spore-forming spherical bacterium that exhibits aerobic metabolic activity. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate warm environments, which may influence its ecological niches. ↵↵As a member of the Staphylococcus genus, S. simiae is characterized by its round morphology, a trait that often facilitates its survival in diverse environmental conditions. The aerobic nature of this bacterium indicates its reliance on oxygen for growth, which could limit its distribution to well-oxygenated habitats. ↵↵The specific traits of S. simiae CCM 7213 may provide insights into its potential ecological roles; for instance, its adaptation to an optimal growth temperature suggests a possibility of thriving in environments such as decaying organic matter or animal-associated habitats where temperatures typically remain moderate. ↵↵Understanding the growth conditions and metabolic requirements of this strain could contribute to broader insights into the ecological dynamics of Staphylococcus species in various habitats. Further research could elucidate its interactions within microbial communities or its relevance in specific ecological contexts." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus simiae Gram-positive sphere non-motile aerobic 29 mesophilic non-spore-forming 308354 AEUN00000000.1 Bac0010148 Acetobacter pomorum DM001 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pomorum 945681 AEUP00000000.1 Bac0010149 Streptococcus equinus ATCC 9812 "Streptococcus equinus ATCC 9812 is a Gram-positive, cocci-shaped bacterium classified within the genus Streptococcus. This organism exhibits facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. The flexibility in its oxygen requirements suggests that S. equinus ATCC 9812 can thrive in varied ecological niches, potentially including the gastrointestinal tracts of certain mammals, given the genus's known associations with such environments.↵↵Under optimal growth conditions, S. equinus ATCC 9812 may contribute to the complex microbial communities present in the intestines, where it could play a role in fermentation processes or in maintaining microbial balance. The facultative anaerobic nature of this microbe indicates it can adapt to fluctuating oxygen levels, which is a common characteristic among gut microbiota. Understanding the metabolic capabilities of S. equinus ATCC 9812 can provide insights into its potential interactions within the host microbiome and its contributions to overall gut health. Further studies could elucidate its specific ecological roles and potential applications in biotechnology or probiotics, although such applications should be approached with careful consideration of its traits and interactions within its environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe 525379 AEVB00000000.1 Bac0010150 Streptococcus infantis ATCC 700779 "Streptococcus infantis ATCC 700779 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic respiration. This strain belongs to the genus Streptococcus, which is characterized by its spherical morphology and positive Gram stain reaction, indicating a thick peptidoglycan layer in its cell wall. As a facultative anaerobe, S. infantis ATCC 700779 can grow in both the presence and absence of oxygen, allowing it to thrive in diverse environments where oxygen levels may fluctuate.↵↵The ability of S. infantis ATCC 700779 to adapt to varying oxygen conditions may contribute to its ecological versatility, potentially enabling it to inhabit a range of niches within the human microbiome or other environments where Streptococcus species are commonly found. This adaptability underlies its potential role in various biological processes, including fermentation and microbial community dynamics. Further research may provide insights into its specific interactions within microbial communities and its contributions to host health, particularly in relation to its metabolic activities in anaerobic conditions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe 889204 AEVD00000000.1 Bac0010151 Streptococcus sanguinis VMC66 "Streptococcus sanguinis VMC66 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, enabling it to adapt to various conditions within host-associated habitats. Streptococcus sanguinis is typically found in the oral cavity, where it plays a significant role in the complex microbial communities associated with dental health. ↵↵This bacterium's ability to form chains and its association with host organisms suggest a potential contribution to the colonization of mucosal surfaces, where it may interact with other microbial species and the host's immune system. The facultative anaerobic nature allows S. sanguinis to survive in the fluctuating oxygen levels often encountered in the oral environment, making it a resilient member of the oral microbiota.↵↵The presence of Streptococcus sanguinis VMC66 in the oral microbiome underscores its importance in maintaining a balanced microbial ecosystem, potentially influencing health outcomes related to oral hygiene and systemic diseases linked to oral bacteria. Its adaptive traits highlight the dynamic nature of microbial interactions within host-associated environments, revealing insights into the complexities of microbial cohabitation and competition in the human body." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888825 AEVH00000000.1 Bac0010152 Streptococcus vestibularis ATCC 49124 "Streptococcus vestibularis ATCC 49124 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This microbe is a member of the Streptococcus genus, which is known for its diverse roles in human and animal microbiomes. The facultative anaerobic nature of S. vestibularis suggests that it can thrive in both aerobic and anaerobic environments, allowing it to colonize various ecological niches, including mucosal surfaces where oxygen levels may fluctuate.↵↵As a cocci-forming organism, S. vestibularis typically exists as single cells or in pairs, which may contribute to its ability to form biofilms in certain environments. The Gram-positive cell wall structure of this bacterium is characterized by a thick peptidoglycan layer, which plays a crucial role in its structural integrity and may also influence interactions with host tissues and other microbial communities.↵↵While the specific ecological roles and interactions of S. vestibularis ATCC 49124 require further investigation, its presence in the oral cavity and associations with other oral microbiota highlight its potential importance in maintaining microbial homeostasis. Understanding the characteristics of S. vestibularis may provide insights into its function within the complex oral ecosystem and its contributions to health and disease states in humans." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus vestibularis Positive Cocci Facultative anaerobe 889206 AEVI00000000.1 Bac0010153 Succinatimonas hippei YIT 12066 "Succinatimonas hippei YIT 12066 is a Gram-negative, non-spore-forming rod-shaped bacterium that demonstrates an anaerobic lifestyle, thriving optimally at a temperature of 37.0°C. This organism's Gram-negative status indicates a complex cell wall structure that may contribute to its environmental adaptability and metabolic processes under anaerobic conditions. ↵↵The rod shape of Succinatimonas hippei suggests a potential role in biofilm formation or as a part of microbial consortia, which are common in various anaerobic environments. Its inability to form spores may imply a reliance on specific environmental conditions for survival and growth, thus limiting its ecological niches primarily to environments where favorable conditions are consistently present.↵↵The optimal growth temperature of 37.0°C aligns with the physiological conditions found in many warm-blooded hosts, hinting at a possible association with such environments, though caution must be exercised in speculating on ecological roles without further evidence. ↵↵Overall, the traits of Succinatimonas hippei YIT 12066 suggest that it may play a significant role in anaerobic biogeochemical cycles, potentially contributing to processes such as succinate production or fermentation, which are critical in microbial ecology and may have implications for understanding metabolic pathways in anaerobic communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Succinivibrionaceae Succinatimonas Succinatimonas hippei Gram-negative rod non-motile anaerobic 37 mesophilic non-spore-forming 762983 AEVO00000000.1 Bac0010154 Vibrio brasiliensis LMG 20546 VIBR0546_99 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio brasiliensis aerobic 170652 AEVS00000000.1 Bac0010155 Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 strain JA2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Rubrivivax Rubrivivax benzoatilyticus 316997 AEWG00000000.1 Bac0010156 Novosphingobium nitrogenifigens DSM 19370 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium nitrogenifigens aerobic 983920 AEWJ00000000.1 Bac0010157 Haemophilus parainfluenzae ATCC 33392 "Haemophilus parainfluenzae ATCC 33392 is a Gram-negative, rod-shaped bacterium that demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and low-oxygen environments. This species is predominantly host-associated, indicating a close relationship with host organisms, which may include humans and other mammals. The ability of H. parainfluenzae to adapt to varying oxygen levels suggests its potential versatility in different biological niches within the host. ↵↵While specific pathogenicity traits or ecological roles for this strain are not detailed, its classification within the genus Haemophilus, which includes several species known to inhabit mucosal surfaces, hints at its involvement in host-associated microbiomes. Such associations could contribute to the overall microbial diversity in host environments, potentially influencing health and disease dynamics. Further research is warranted to elucidate the specific interactions and roles of H. parainfluenzae ATCC 33392 in its natural habitat, as understanding these relationships may shed light on the broader ecological implications of this bacterium within host-associated communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 888828 AEWU00000000.1 Bac0010158 Prevotella multiformis DSM 16608 "Prevotella multiformis DSM 16608 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in anaerobic environments. This species belongs to the genus Prevotella, which is known for its role in the human microbiome and its association with complex microbial communities.↵↵As a member of the Prevotella genus, P. multiformis contributes to various biochemical processes, particularly in the digestive systems of animals, including humans. The anaerobic nature of this bacterium suggests that it plays a significant role in fermentation processes, potentially influencing the availability of nutrients and the overall metabolic profile of its environment. ↵↵The non-spore-forming characteristic of P. multiformis indicates that it relies on specific conditions for survival and proliferation, which may limit its ecological niches to environments where anaerobic conditions prevail, such as the gastrointestinal tract or certain oral habitats. Understanding the traits of P. multiformis can shed light on its interactions within microbial communities and its potential contributions to health or disease states.↵↵The presence of P. multiformis in microbial consortia underscores the importance of anaerobic bacteria in maintaining the balance of microbial ecosystems, which can have implications for digestion and nutrient absorption in host organisms. Further exploration of its metabolic capabilities and interactions with other microbes could provide valuable insights into its role in health and disease contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella multiformis Gram-negative rod non-motile anaerobic non-spore-forming 888743 AEWX00000000.1 Bac0010159 Streptococcus sanguinis SK678 "Streptococcus sanguinis SK678 is a Gram-positive cocci bacterium that typically arranges itself in chains or pairs. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may contribute to its adaptability within diverse host-associated habitats. ↵↵Streptococcus sanguinis is known to inhabit the oral cavity, where it plays a significant role in the formation of dental biofilms. Its presence is often associated with the initial colonization of teeth, which suggests a critical role in oral microbiome dynamics. The ability to grow in varying oxygen conditions allows this bacterium to occupy niches that may be inaccessible to strict aerobes, enhancing its survival and competitive advantage within the host environment.↵↵Additionally, the chain and pair arrangement observed in this strain may facilitate its interactions with other microbial species in the oral ecosystem, potentially influencing community structure and function. Understanding the ecological implications of Streptococcus sanguinis SK678’s traits may provide insight into its contributions to oral health and disease, as well as its role in the broader context of microbial interactions within host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888819 AEXA00000000.1 Bac0010160 Candidatus Nitrosopumilus salaria BD31 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Candidatus Nitrosopumilus salarius 1170320 AEXL00000000.2 Bac0010161 Anaerococcus hydrogenalis ACS-025-V-Sch4 "Anaerococcus hydrogenalis ACS-025-V-Sch4 is a Gram-positive, coccoid-shaped bacterium that exhibits obligate anaerobic growth. As an anaerobe, this microbe thrives in environments devoid of oxygen, which is critical for its metabolic processes and survival. ↵↵The cocci shape of Anaerococcus hydrogenalis is characteristic of its genus, which typically features spherical cells that may occur in clusters or pairs. This morphology is often associated with various ecological niches, including the human microbiome, where anaerobic conditions are prevalent. The obligate anaerobic lifestyle of Anaerococcus hydrogenalis suggests its adaptation to environments such as the gastrointestinal tract, where it may play a role in the complex microbial community and contribute to various metabolic pathways.↵↵Understanding the specific traits of Anaerococcus hydrogenalis ACS-025-V-Sch4 provides insights into its potential functional roles within anaerobic ecosystems. The ability of this organism to thrive in oxygen-depleted environments underscores its importance in biogeochemical cycles, particularly in the breakdown of organic matter and the production of metabolic byproducts such as short-chain fatty acids. Such functions are essential for maintaining the health of anaerobic ecosystems and may have implications for human health, given the bacterium's potential presence in the gut microbiome." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus hydrogenalis Positive Cocci Obligate anaerobe 879306 AEXN00000000.1 Bac0010162 Streptococcus sanguinis SK115 "Streptococcus sanguinis SK115 is a Gram-positive, facultative anaerobic bacterium characterized by its cocci shape and tendency to form chains and pairs. This strain is part of the Streptococcus genus, which is commonly found in the oral cavity and is associated with human hosts. The ability to thrive in both aerobic and anaerobic conditions suggests that S. sanguinis SK115 can adapt to varying environments within the host, contributing to its persistence in the oral ecosystem.↵↵As a member of the oral microbiome, S. sanguinis is known for its role in dental health, where it competes with pathogenic bacteria and contributes to the balance of microbial communities. Its host-associated habitat highlights the bacterium's potential involvement in symbiotic relationships, where it may play a protective role against more harmful microbes. ↵↵Further, the arrangement of cells in chains and pairs may facilitate the formation of biofilms, which are critical for colonization and stability within the oral cavity. This characteristic may also enhance its interactions with the host's immune system, allowing for nuanced responses to environmental changes. Understanding the specific ecological roles of S. sanguinis SK115 within the complex oral microbiome can provide insights into its contributions to oral health and the dynamics of microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888810 AEXW00000000.1 Bac0010163 Rhizobium grahamii CCGE 502 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium grahamii legume root nodules 990285 AEYE00000000.2 Bac0010164 Rhizobium sp. CCGE 510 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. CCGE 510 1132836 AEYF00000000.1 Bac0010165 Streptomyces griseoaurantiacus M045 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseoaurantiacus 29 mesophilic spore-forming 996637 AEYX00000000.1 Bac0010166 Rhizobium etli CNPAF512 "Rhizobium etli CNPAF512 is a Gram-negative, aerobic rod-shaped bacterium that exists primarily in a host-associated habitat. This microorganism is characterized by its single-cell arrangement, which is typical of many individual bacterial species. ↵↵R. etli CNPAF512 is part of the diverse Rhizobium genus, known for its symbiotic relationships with leguminous plants, particularly within the context of nitrogen fixation. Although specific traits related to its pathogenicity or broader ecological relationships are not detailed here, its association with host plants suggests a significant role in enhancing soil fertility and promoting plant growth through nitrogen assimilation. ↵↵The aerobic nature of R. etli CNPAF512 indicates that it relies on oxygen for its metabolic processes, which is consistent with its habitat and ecological niche. This adaptation may afford it competitive advantages in environments where oxygen is readily available, particularly in association with legumes, where it can establish beneficial interactions.↵↵Overall, R. etli CNPAF512 exemplifies the intricate relationships between soil microbiota and plant life, highlighting the importance of microbial communities in sustainable agricultural systems. Its presence in host-associated environments emphasizes the potential contributions of this bacterium to nutrient cycling and ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Singles 993047 AEYZ00000000.1 Bac0010167 Escherichia coli 97.0246 "Escherichia coli 97.0246 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at 37.0°C, a temperature that aligns with the human body, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli 97.0246 can grow in both aerobic and anaerobic environments, allowing it to exploit a range of ecological niches within host organisms.↵↵The structural characteristics of this strain, particularly its Gram-negative cell wall composition, provide insights into its potential interactions within host systems. The outer membrane, containing lipopolysaccharides, may play a crucial role in mediating host responses and interactions. Additionally, the rod shape and ability to arrange in singles and pairs may enhance its motility and colonization efficiency within the host's gastrointestinal tract.↵↵Understanding the specific traits of Escherichia coli 97.0246 contributes to our broader knowledge of microbial diversity and host-microbe interactions. The strain's facultative anaerobic nature implies that it can adapt to varying oxygen levels within the host environment, potentially influencing its survival and competitive dynamics with other microbiota. This adaptability is pivotal for maintaining a balanced microbial ecosystem in the host, highlighting the ecological significance of this strain in its natural habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 869670 AEZJ00000000.2 Bac0010168 Escherichia coli 1.2264 "Escherichia coli 1.2264 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at 37.0°C, which coincides with the body temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli 1.2264 has the ability to grow in both aerobic and anaerobic environments, allowing it to exploit a variety of niches within the host's microbiome. ↵↵The combination of these traits suggests that E. coli 1.2264 is well-suited for life in the intestines of mammals, where it may play a role in nutrient absorption and gut health. The facultative anaerobic nature of this strain further implies that it can survive in fluctuating oxygen levels, which is characteristic of the gastrointestinal tract where oxygen gradients exist. This adaptability may contribute to the strain's ability to coexist with various microbial communities within the host. Understanding the specific interactions and roles of E. coli 1.2264 within its ecological niche could provide insights into its contributions to gut microbiota diversity and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 869675 AEZO00000000.2 Bac0010169 Escherichia coli 4.0967 "Escherichia coli 4.0967 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli 4.0967 can survive both in the presence and absence of oxygen, allowing it to occupy diverse niches within the host environment. ↵↵The ability to grow under varying oxygen conditions may confer a competitive advantage in fluctuating microenvironments, such as the gastrointestinal tract, where oxygen availability can vary significantly. This trait also facilitates its involvement in various metabolic processes, potentially impacting host nutrient absorption and microbial interactions. Understanding the specific ecological roles of E. coli 4.0967 within its host could provide insights into its contributions to microbial community dynamics and host health. Given its adaptability, E. coli 4.0967 may play a role in maintaining the balance of the microbiome by influencing nutrient cycling and competing with other microbial species for resources." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 869687 AFAA00000000.2 Bac0010170 Dialister micraerophilus DSM 19965 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister micraerophilus 888062 AFBB00000000.1 Bac0010171 Sutterella parvirubra YIT 11816 "Sutterella parvirubra YIT 11816 is a Gram-negative, non-spore-forming, ovoid-shaped bacterium that thrives in anaerobic environments. This microbe is part of the diverse microbiota found within the gastrointestinal tract of various hosts, where it may play a role in the complex interactions of gut microbiome dynamics. ↵↵As an anaerobe, S. parvirubra YIT 11816 requires environments devoid of oxygen for growth, which is consistent with its habitat within the intestines, where oxygen levels are typically low. The ovoid morphology suggests that it may possess unique adaptations for survival and function in anaerobic niches, potentially influencing metabolic processes or interactions with other gut microorganisms.↵↵Further studies into the metabolic pathways of Sutterella parvirubra may provide insight into its potential roles in nutrient metabolism or its contributions to the overall health of the gut ecosystem. Understanding these dynamics could shed light on the intricate relationships between gut bacteria and their hosts, highlighting the importance of anaerobic bacteria in maintaining gut homeostasis." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella parvirubra Gram-negative ovoid non-motile anaerobic non-spore-forming 762967 AFBQ00000000.1 Bac0010172 Caldalkalibacillus thermarum TA2.A1 "Caldalkalibacillus thermarum TA2.A1 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 45.0°C. This microbe is classified as aerobic, indicating that it requires oxygen for growth and metabolic processes. ↵↵The spore-forming trait of C. thermarum TA2.A1 suggests a mechanism for survival in challenging environmental conditions, allowing it to endure periods of nutrient scarcity or adverse temperatures. Its optimal growth temperature of 45.0°C reflects a thermophilic nature, positioning it well within environments such as hot springs or thermally altered habitats where other microbial life may be less competitive. ↵↵The unique combination of its Gram-positive cell wall and rod morphology may contribute to its resilience in high-temperature environments, potentially influencing its interactions with other microorganisms and the surrounding ecosystem. Understanding these traits can provide insights into the ecological roles of C. thermarum TA2.A1, particularly in biogeochemical cycles within thermophilic zones. The ability to form spores may also indicate a potential role in nutrient cycling, as spores can remain dormant and viable for extended periods, contributing to the stability and diversity of microbial communities in extreme environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldalkalibacillus Caldalkalibacillus thermarum Gram-positive rod non-motile aerobic 45 thermophilic spore-forming 986075 AFCE00000000.1 Bac0010173 Leisingera sp. ANG1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera sp. ANG1 1002340 AFCF00000000.2 Bac0010174 Salmonella enterica subsp. enterica serovar Adelaide str. A4-669 "Salmonella enterica subsp. enterica serovar Adelaide str. A4-669 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain optimally thrives at a temperature of 37.0°C, which aligns with the physiological temperature of many host organisms. As a chemoorganotroph, S. enterica Adelaide str. A4-669 derives its energy from organic compounds, indicating its reliance on host-associated environments for growth and sustenance.↵↵The microaerophilic nature of this strain suggests it occupies niches where oxygen levels are lower than atmospheric concentrations, which may influence its interactions with host organisms and other microbial communities. The ability to form chains could facilitate its colonization and persistence in such environments, potentially enhancing its adaptability to varying physiological conditions within host-associated habitats.↵↵The specific ecological role of S. enterica Adelaide str. A4-669, particularly in relation to its host, remains to be fully elucidated; however, its traits suggest a capacity for intricate interactions with host microbiomes, possibly influencing host health or disease states. This unique combination of traits positions S. enterica Adelaide str. A4-669 as a significant player in microbial dynamics, particularly in contexts where oxygen levels fluctuate, further underscoring the importance of studying its ecological relationships within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913063 AFCI00000000.1 Bac0010175 Salmonella enterica subsp. enterica serovar Montevideo str. S5-403 "Salmonella enterica subsp. enterica serovar Montevideo str. S5-403 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or occur as singles. This strain displays a microaerophilic oxygen requirement, indicating that it thrives in environments with reduced oxygen levels, which is consistent with its habitat as a host-associated microbe. The optimal growth temperature for S5-403 is around 37.0°C, aligning with the typical physiological conditions found within warm-blooded animal hosts.↵↵As a chemoorganotroph, S. enterica subsp. enterica serovar Montevideo str. S5-403 obtains its energy through the oxidation of organic compounds, a trait that supports its adaptation to nutrient-rich environments often found within host organisms. This metabolic capability may facilitate its survival and proliferation in the complex microbiomes associated with various hosts. ↵↵The ecological significance of this strain may be linked to its potential interactions within the host's microbiota and its ability to adapt to varying oxygen levels, which could influence its ecological role and interactions with other microbial species. Understanding such traits can provide insights into the dynamics of host-associated microbial communities and the potential implications for host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913242 AFCS00000000.1 Bac0010176 Salmonella enterica subsp. enterica serovar Rubislaw str. A4-653 "Salmonella enterica subsp. enterica serovar Rubislaw str. A4-653 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This strain thrives optimally at 37.0°C, reflecting its adaptation to host-associated environments, where it can utilize organic compounds as its energy source, classifying it as a chemoorganotroph. ↵↵As part of the Salmonella enterica subspecies, serovar Rubislaw str. A4-653 is inferred to inhabit environments closely associated with animal hosts, suggesting a potential role in the complex interactions between the host's microbiota and pathogenic microorganisms. Its microaerophilic nature indicates that it thrives in low-oxygen conditions, which may be relevant in certain host tissues or during specific stages of infection. ↵↵Understanding the growth conditions and metabolic capabilities of Salmonella enterica subsp. enterica serovar Rubislaw str. A4-653 provides insights into its ecological niche and potential interactions within host-associated microbiomes. Further study of its physiological traits may reveal implications for its role in health and disease dynamics within its host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913081 AFCT00000000.1 Bac0010177 Salmonella enterica subsp. enterica serovar Senftenberg str. "Salmonella enterica subsp. enterica serovar Senftenberg is a Gram-negative bacterium characterized by its spirilla shape and a tendency to form chains or exist as singles. This microbe thrives optimally at a temperature of 37.0°C, aligning with the typical body temperature of warm-blooded hosts. As a chemoorganotroph, S. enterica serovar Senftenberg derives its energy from organic compounds, which is consistent with its habitat, typically associated with host environments. ↵↵This microbe exhibits a microaerophilic oxygen requirement, indicating that it grows best in oxygen concentrations lower than that of the atmosphere, which may influence its interactions with host organisms. The adaptation to host-associated habitats suggests a potential role in the microbial communities of the gastrointestinal tract of various animals, where it may contribute to complex biochemical processes. ↵↵The presence of S. enterica serovar Senftenberg in host environments highlights its ecological significance in the microbial ecology of the gut, where it may participate in nutrient cycling and interactions with other microbial species, potentially influencing the overall health and metabolism of its host. Understanding these traits can provide insights into the ecological roles of this bacterium in host-associated environments and its interactions within the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 AFCU00000000.1 Bac0010178 Salmonella enterica subsp. enterica serovar Urbana str. R8-2977 "Salmonella enterica subsp. enterica serovar Urbana str. R8-2977 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This strain thrives optimally at 37.0°C, suggesting a preference for conditions similar to those found within host organisms. As a chemoorganotroph, S. enterica serovar Urbana R8-2977 utilizes organic compounds as its energy source, which aligns with its habitat that is closely associated with hosts.↵↵The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for its metabolic processes, which is typical for many bacteria that inhabit specific niches within animal hosts. The association with hosts suggests that this strain may play a role in the complex microbial ecosystems found within various animal species, potentially influencing host health and interactions with other microbial inhabitants.↵↵Importantly, the ability to form chains may facilitate communication and coordination among bacterial cells, potentially enhancing their survival and adaptability in dynamic host environments. This trait could provide further insights into the ecological role of S. enterica serovar Urbana R8-2977, particularly in its capacity to participate in microbe-host interactions and influence the overall microbiome composition." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 913084 AFCW00000000.1 Bac0010179 Paenibacillus sp. HGF7 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. HGF7 944559 AFDH00000000.1 Bac0010180 Streptococcus sanguinis SK1087 "Streptococcus sanguinis SK1087 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may facilitate its survival in various host-associated habitats. ↵↵As a member of the Streptococcus genus, S. sanguinis is known to inhabit the oral cavity, where it plays a role in the complex microbial ecosystem of the human mouth. Its presence is often associated with the formation of dental plaque and is thought to contribute to the maintenance of oral health under certain conditions. ↵↵The facultative anaerobic nature of S. sanguinis SK1087 suggests it can adapt to fluctuating oxygen levels, potentially allowing it to colonize different niches within the host environment. This adaptability may also confer advantages in competing with other microbial species for resources. ↵↵Understanding the traits of S. sanguinis SK1087 enhances our knowledge of its potential roles in the oral microbiome, including its contributions to microbial community dynamics and its interactions with both host tissues and other microorganisms. Further research into this strain could provide insights into its functional significance within the host-associated microbiota." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888824 AFDP00000000.1 Bac0010181 Streptococcus sanguinis SK1056 "Streptococcus sanguinis SK1056 is a Gram-positive coccus that typically arranges itself in chains or pairs. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic environments, which is indicative of its survival capabilities in various host-associated habitats. ↵↵Streptococcus sanguinis is a member of the oral microbiota and is often found in the mouth, where it plays a crucial role in dental health. Its ability to form chains or pairs may facilitate its colonization and persistence in biofilms on tooth surfaces and within the oral cavity. Given its facultative anaerobic nature, S. sanguinis SK1056 can adapt to varying oxygen levels in the oral environment, which is subject to fluctuations due to factors such as food consumption and oral hygiene practices.↵↵The presence of S. sanguinis in the oral cavity can have implications for oral health, as it is involved in the initial stages of dental plaque formation. Moreover, its ecological role may extend beyond mere colonization; it could potentially influence the composition of the microbial community in the mouth by outcompeting other species for resources or by interacting with them in complex ways. Understanding the specific traits and behaviors of S. sanguinis SK1056 can provide insights into its contributions to both oral ecology and the maintenance of a balanced microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs 888820 AFFL00000000.1 Bac0010182 Paraprevotella clara YIT 11840 "Paraprevotella clara YIT 11840 is a Gram-negative bacterium characterized by its distinctive cell wall structure, which lacks the thick peptidoglycan layer typical of Gram-positive organisms. This trait may confer advantages in certain environments, such as increased resistance to antibiotics that target cell wall synthesis. ↵↵While specific metabolic capabilities and ecological roles of Paraprevotella clara YIT 11840 are not detailed in the available data, its classification within the Paraprevotella genus suggests it may be involved in the fermentation of complex carbohydrates, potentially contributing to the breakdown of dietary fibers in anaerobic environments such as the intestines of mammals. ↵↵The presence of Paraprevotella clara YIT 11840 in the gut microbiota may indicate its role in maintaining gut health, influencing host metabolism, or modulating immune responses, though further studies would be necessary to elucidate these interactions. The unique Gram-negative nature of this bacterium may also indicate specific ecological niches within microbial communities where it can thrive, potentially participating in symbiotic relationships with other gut microbes. Understanding the functional contributions of Paraprevotella clara YIT 11840 could provide insights into the complex dynamics of gut microbiomes and their impacts on host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella clara negative 762968 AFFY00000000.1 Bac0010183 Shigella boydii 5216-82 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella genomosp. SF-2015 766141 AFGE00000000.1 Bac0010184 Shigella flexneri VA-6 "Shigella flexneri VA-6 is a nonsporulating, Gram-negative rod-shaped bacterium that typically occurs in pairs or as single cells. This microbe is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, although its optimal growth temperature is around 37.0°C. As a chemoorganotroph, S. flexneri VA-6 derives its energy from organic compounds, which reflects its adaptation to a host-associated habitat where it likely interacts with various organic substrates found within the host organism.↵↵This strain, like other members of the Shigella genus, is associated with pathogenicity in humans, but specific details regarding its virulence factors or clinical implications are not provided here. The ability of S. flexneri VA-6 to thrive in the human gastrointestinal tract highlights its role in microbial community dynamics, as it may influence the composition and function of gut microbiota during infection. Furthermore, its facultative anaerobic nature suggests it could adapt to varying oxygen levels within host tissues, potentially impacting its survival and interaction with the immune system. Understanding the ecological niche of S. flexneri VA-6 may provide insights into its evolutionary adaptations within the host environment and its potential implications for human health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 766145 AFGW00000000.1 Bac0010185 Shigella flexneri K-227 "Shigella flexneri K-227 is a nonsporulating, rod-shaped bacterium that exhibits a Gram-negative cell wall structure and typically arranges itself in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperatures of many mammalian hosts, reflecting its adaptation to a host-associated habitat. As a chemoorganotroph, Shigella flexneri K-227 derives its energy from organic compounds, which is consistent with its role in a host environment where it exploits available nutrients.↵↵The facultative anaerobic nature of this microbe allows it to adapt to varying oxygen levels, making it versatile in its metabolic processes. Such adaptability may contribute to its survival and persistence in diverse host conditions. The association of Shigella flexneri with host organisms highlights its potential interactions within the microbiome, where it may compete with other microbial species for resources or engage in host-microbe dynamics.↵↵Understanding the traits of Shigella flexneri K-227 not only provides insight into its biological and ecological roles but also underscores the importance of studying host-associated microbes in the context of health and disease. This strain exemplifies the complex interplay between microbial life and host environments, which can influence both microbial behavior and host responses." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 766147 AFGY00000000.1 Bac0010186 Methyloversatilis universalis FAM5 "Methyloversatilis universalis FAM5 is a Gram-negative, aerobic bacterium recognized for its metabolic versatility, particularly in the degradation of various organic compounds. This microbial species exhibits a robust ability to utilize methanol and other one-carbon compounds, which makes it a candidate for bioremediation applications and the potential conversion of waste into valuable resources. The aerobic nature of M. universalis FAM5 indicates that it requires oxygen for growth and metabolism, which may influence its ecological niches, typically found in environments where oxygen is readily available, such as soil or aquatic systems.↵↵The Gram-negative cell wall structure of M. universalis FAM5, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, contributes to its adaptability in various environments and may enhance its resistance to certain environmental stresses. This trait is commonly associated with the broader survival strategies of bacterial species in competitive ecosystems.↵↵Furthermore, the metabolic capabilities of Methyloversatilis universalis FAM5 suggest a potential role in carbon cycling, as it can contribute to the conversion of methane and other volatile organic compounds into biomass or other metabolites. This not only underscores the importance of this microbe in ecological processes but also highlights its potential utility in sustainable practices aimed at reducing greenhouse gas emissions and promoting environmental health." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Methyloversatilis Methyloversatilis universalis negative aerobic 1000565 AFHG00000000.1 Bac0010187 Capnocytophaga sp. oral taxon 329 str. F0087 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 329 706436 AFHP00000000.2 Bac0010188 Parvimonas sp. oral taxon 110 str. F0139 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Parvimonas sp. oral taxon 110 767100 AFII00000000.1 Bac0010189 Hallella multisaccharivorax DSM 17128 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hallella Hallella multisaccharivorax 688246 AFJE00000000.1 Bac0010190 Leptospira weilii str. 2006001855 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira weilii 996804 AFJM00000000.2 Bac0010191 Leptospira interrogans serovar Grippotyphosa str. LT2186 "Leptospira interrogans serovar Grippotyphosa str. LT2186 is a Gram-negative, spiral-shaped bacterium belonging to the genus Leptospira. This organism is classified as an aerobe, indicating its requirement for oxygen to thrive. It is typically found in host-associated habitats, suggesting a close relationship with its biological hosts. The optimal temperature for growth is approximately 28.0 °C, which aligns with the environmental conditions often encountered in the natural habitats of its hosts.↵↵Leptospira interrogans, including this particular serovar, is known for its unique morphology and metabolic adaptations that facilitate survival in diverse environments. The spiral shape of the bacterium may play a role in its motility and ability to navigate through viscous environments, such as those found within host tissues or fluids.↵↵Given its aerobe classification and optimal growth temperature, L. interrogans serovar Grippotyphosa str. LT2186 may exhibit specific ecological preferences that align with the habitats of its potential hosts. Understanding these traits contributes to our knowledge of the ecological dynamics of Leptospira species and their interactions with various environments, particularly in relation to their survival strategies within host-associated niches. As such, this strain serves as an important model for studying the biology and ecology of Leptospira in context with their hosts." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1001599 AFME00000000.2 Bac0010192 Leptospira interrogans serovar Zanoni str. LT2156 "Leptospira interrogans serovar Zanoni str. LT2156 is a Gram-negative bacterium characterized by its spirilla shape and aerobic metabolic requirements. This microbe thrives optimally at a temperature of 28.0°C, indicating a preference for environments that are moderately warm. As a member of the Leptospira genus, it is associated with host organisms, suggesting a potential symbiotic or pathogenic relationship with its hosts, although specific interactions were not detailed in the provided traits.↵↵The Gram-negative nature of L. interrogans serovar Zanoni str. LT2156 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various environments. Its spirilla morphology, typically characterized by a helical shape, may provide advantages in motility, aiding in its movement through viscous environments such as host tissues or fluids.↵↵The ecological role of this strain, while not fully characterized, can be inferred from its habitat and oxygen requirements. The association with hosts suggests that it may play a role in the microbiota of specific organisms or in specific ecological niches where it can utilize organic compounds in aerobic conditions. This trait could lend insights into its ecological dynamics, particularly in environments where host interactions are essential for survival and propagation, highlighting its potential significance in understanding microbial ecosystems associated with animal hosts." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1001601 AFMF00000000.2 Bac0010193 Salinisphaera shabanensis E1L3A Pseudomonadati Pseudomonadota Gammaproteobacteria Salinisphaerales Salinisphaeraceae Salinisphaera Salinisphaera shabanensis 1033802 AFNV00000000.2 Bac0010194 Bradyrhizobiaceae bacterium SG-6C Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobiaceae bacterium SG-6C 709797 AFOF00000000.1 Bac0010195 Ligilactobacillus salivarius GJ-24 LSGJ_11 "Ligilactobacillus salivarius GJ-24 LSGJ_11 is a Gram-positive, rod-shaped bacterium characterized by its nonsporulating nature and facultative anaerobic metabolism. This strain is associated with host environments, indicating its potential role in the microbiota of various organisms, including humans. As a member of the Ligilactobacillus genus, L. salivarius is known for its ability to ferment carbohydrates, which may contribute to its survival and functionality in host-associated habitats.↵↵The facultative anaerobic characteristic of L. salivarius GJ-24 allows it to thrive in both oxygen-rich and oxygen-poor environments, suggesting adaptability to varying conditions within the host. This flexibility may enable the strain to occupy niches within the gastrointestinal tract, where oxygen levels can fluctuate. Additionally, the presence of this bacterium in host-associated habitats highlights its potential symbiotic relationships, possibly contributing to the maintenance of gut health through metabolic byproducts that favor beneficial microbial communities.↵↵Overall, the traits of Ligilactobacillus salivarius GJ-24 LSGJ_11 underscore its significance in the context of host-associated microbiomes, where it may play a role in nutrient metabolism and the modulation of host immune responses, further emphasizing the complex interactions between microbes and their hosts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 AFOI00000000.1 Bac0010196 Acidiphilium sp. PM Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidiphilium Acidiphilium sp. PM 1043206 AFPR00000000.1 Bac0010197 Fusobacterium animalis ATCC 51191 "Fusobacterium animalis ATCC 51191 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is host-associated, suggesting a close relationship with its hosts, potentially residing in the gastrointestinal tract of various animals. Its anaerobic nature indicates that it requires environments devoid of oxygen for optimal growth and metabolism.↵↵Fusobacterium species are often recognized for their role in the microbiota of mammals, where they may contribute to the fermentation of dietary substrates. While the specific ecological role of F. animalis ATCC 51191 remains to be fully elucidated, its anaerobic lifestyle and association with host organisms likely indicate a function in nutrient processing within the host's gut environment. Moreover, the presence of this organism in the gastrointestinal tract suggests potential interactions with both the host's immune system and other microbial communities, highlighting its potential significance in maintaining gut health and homeostasis. Further exploration of its ecological function may provide insights into the complex dynamics of host-associated microbiomes." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 997347 AFQD00000000.1 Bac0010198 Neisseria macacae ATCC 33926 "Neisseria macacae ATCC 33926 is a Gram-negative bacterium characterized by its aerobic metabolism. This microbe belongs to the genus Neisseria, which is known for its importance in both environmental and clinical contexts. As an aerobic organism, N. macacae requires oxygen for its growth and metabolic processes, distinguishing it from anaerobic counterparts. ↵↵The Gram-negative nature of N. macacae indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which typically contains lipopolysaccharides. This structural feature can influence the bacterium's interactions with its environment and may affect its susceptibility to certain antibiotics, as well as its immune evasion mechanisms.↵↵While specific pathogenicity and ecological roles for N. macacae have not been outlined in the provided data, the organism's classification within the Neisseria genus suggests that it may share some physiological and ecological traits with related species. Neisseria species are often found in various environments, including mucosal surfaces of animals, which may indicate a potential niche for N. macacae in similar habitats.↵↵Overall, the aerobic nature and Gram-negative characteristics of Neisseria macacae ATCC 33926 suggest its adaptability to oxygen-rich environments, potentially allowing it to thrive in diverse ecological niches where oxygen is readily available. Further studies could elucidate its specific ecological roles and contributions to microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria macacae negative aerobic 997348 AFQE00000000.1 Bac0010199 Brachyspira pilosicoli SP16 "Brachyspira pilosicoli SP16 is a Gram-negative, anaerobic bacterium characterized by its unique metabolic and ecological traits. This microbe is part of the Brachyspira genus, which comprises a group of spirochetes known for their helical shape and motility. Brachyspira pilosicoli SP16 thrives in environments devoid of oxygen, indicating its adaptation to anaerobic conditions. ↵↵The anaerobic nature of Brachyspira pilosicoli SP16 suggests a potential role in specific ecological niches, such as the gastrointestinal tracts of various hosts where oxygen levels are low. This microbe's ability to survive and grow in such environments may contribute to complex microbial communities, highlighting its potential importance in gut microbiomes. ↵↵Understanding the traits of Brachyspira pilosicoli SP16 may provide insights into the functioning of anaerobic ecosystems and the dynamics of microbial interactions within these environments. Further research is warranted to explore its ecological roles and contributions to the overall health of its associated habitats." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli Negative Anaerobe 1042418 AFQM00000000.1 Bac0010200 Haemophilus haemolyticus M19501 M19501_022 "Haemophilus haemolyticus M19501 M19501_022 is a Gram-negative bacterium that resides in the nasopharynx and upper respiratory tract of humans. This microbe is classified as a facultative anaerobe, which indicates its ability to thrive in both aerobic and anaerobic environments, a trait that may contribute to its survival and adaptability within the diverse microbial communities of the human upper respiratory system.↵↵As a member of the genus Haemophilus, H. haemolyticus is known to exhibit hemolytic activity, although specific hemolytic traits for strain M19501 have not been detailed. The presence of this organism in the nasopharyngeal flora suggests its potential role in maintaining microbial balance, although it may also be implicated in opportunistic infections under certain conditions. Understanding the characteristics of H. haemolyticus M19501 M19501_022 enhances our knowledge of the microbial diversity present in human respiratory habitats and emphasizes the importance of studying facultative anaerobes in relation to respiratory health.↵↵In conclusion, the ecological role of H. haemolyticus M19501 M19501_022 in the upper respiratory tract underscores the complexity of host-microbe interactions and the significance of nasopharyngeal flora in human health and disease. Further research into this strain could provide insights into the dynamics of respiratory microbiota and its implications for respiratory tract conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus haemolyticus Negative Facultative anaerobe nasopharynx; upper respiratory tract 726 AFQO00000000.1 Bac0010201 Streptococcus mitis SK1073 "Streptococcus mitis SK1073 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains and pairs. As a facultative anaerobe, this microbe is capable of thriving in both aerobic and anaerobic environments, allowing it to adapt to various host-associated habitats. ↵↵S. mitis is commonly found within the human oral cavity, where it plays a role in the complex microbial ecosystem. Its ability to grow in the presence or absence of oxygen may contribute to its persistence in diverse niches within the host, including dental biofilms and potentially influencing oral health. ↵↵The presence of S. mitis in these environments not only highlights its role in normal flora but may also reflect its potential involvement in microbial interactions within the host. This adaptability underscores the complexity of host-associated microbiomes and suggests that S. mitis could serve as a model organism for studying the dynamics of commensal bacteria in relation to human health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1008452 AFQT00000000.1 Bac0010202 Achromobacter insuavis AXX-A Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter insuavis aerobic 1003200 AFRQ00000000.1 Bac0010203 Staphylococcus epidermidis VCU112 "Staphylococcus epidermidis VCU112 is a Gram-positive cocci that typically arranges itself in clusters or singles, reflecting its characteristic staphylococcal morphology. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. ↵↵S. epidermidis is predominantly host-associated, suggesting a close relationship with host organisms, where it may inhabit various niches on the skin and mucous membranes. This association highlights its potential role in the human microbiome, where it can contribute to the maintenance of skin health and the prevention of colonization by more pathogenic organisms. ↵↵The ability of S. epidermidis VCU112 to thrive in diverse oxygen conditions may enhance its adaptability within host environments, allowing it to occupy ecological niches that fluctuate in oxygen availability. This versatility could provide insights into its interactions with host immune responses and its role in biofilm formation, particularly on medical devices, although specific pathogenicity traits are not detailed in the provided data. Further research into its ecological interactions could illuminate the balance between commensalism and opportunism in this strain." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 904332 AFTW00000000.1 Bac0010204 Streptococcus infantis X "Streptococcus infantis X is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. As a member of the Streptococcus genus, this microbe exhibits a spherical morphology typical of cocci, which can occur singly or in chains. The facultative anaerobic nature of S. infantis X allows it to thrive in both aerobic and anaerobic environments, providing it with versatility in nutrient acquisition and survival in varying conditions.↵↵The Gram-positive nature of this bacterium suggests a thick peptidoglycan layer in its cell wall, which is a hallmark of its classification. This structural feature may contribute to its resilience against certain environmental stressors, although specific adaptive mechanisms have yet to be elucidated. ↵↵While detailed ecological roles and interactions with other organisms are not specified, the traits of S. infantis X imply potential involvement in fermentation processes or symbiotic relationships within its habitat. The ability to grow in diverse oxygen conditions may facilitate its presence in various niches, from the oral cavity to the gastrointestinal tract, where it could play a role in maintaining microbial balance. ↵↵Overall, the adaptability of Streptococcus infantis X to both aerobic and anaerobic conditions highlights its potential significance in microbial communities, suggesting avenues for further research into its ecological interactions and contributions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe 997830 AFUQ00000000.1 Bac0010205 Actinomyces sp. oral taxon 175 str. F0384 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 175 944560 AFUR00000000.1 Bac0010206 Parvimonas sp. oral taxon 393 str. F0440 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Parvimonas sp. oral taxon 393 944565 AFUS00000000.1 Bac0010207 Mycoplasmopsis anatis 1340 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis anatis 1034808 AFVJ00000000.1 Bac0010208 Mycobacterium colombiense CECT 3035 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium colombiense 1041522 AFVW00000000.2 Bac0010209 Oenococcus kitaharae DSM 17330 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Oenococcus Oenococcus kitaharae 1045004 AFVZ00000000.1 Bac0010210 Vibrio sp. N418 VIBRN418_99 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. N418 701176 AFWD00000000.1 Bac0010211 Vibrio ichthyoenteri ATCC 700023 VII00023_99 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ichthyoenteri 142461 AFWF00000000.1 Bac0010212 SAR116 cluster alpha proteobacterium HIMB100 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Puniceispirillales SAR116 cluster alpha proteobacterium HIMB100 909943 AFXB00000000.1 Bac0010213 Salmonella enterica subsp. enterica serovar Infantis str. SARB27 "Salmonella enterica subsp. enterica serovar Infantis str. SARB27 is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This strain thrives optimally at 37.0°C, which aligns with the typical body temperature of its host organisms. As a chemoorganotroph, S. enterica subsp. enterica serovar Infantis str. SARB27 utilizes organic compounds as its energy source, further indicating its adaptation to a host-associated habitat. Its microaerophilic nature suggests that it requires lower levels of oxygen than are present in the atmosphere for optimal growth, which may reflect its ecological niche within host environments where oxygen levels can be limited.↵↵Given its traits, this strain of Salmonella may play a role in the complex interactions within the microbiota of its host, potentially influencing host health and disease dynamics. The ability to thrive under microaerophilic conditions may also provide insights into its survival strategies within specific host niches, where transient oxygen levels can fluctuate. Understanding these traits can contribute to a broader comprehension of the ecological roles of Salmonella species in both health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 596155 AFYI00000000.1 Bac0010214 Lacticaseibacillus casei 21/1 "Lacticaseibacillus casei 21/1 is a Gram-positive, rod-shaped bacterium that typically forms chains and demonstrates facultative anaerobic metabolism. This microbe thrives optimally at a temperature of 30.0°C, indicating a preference for moderate thermal conditions that may reflect its specialized habitat.↵↵Given its classification as a facultative anaerobe, Lacticaseibacillus casei 21/1 has the ability to grow in both the presence and absence of oxygen, which may provide it with a competitive advantage in diverse environments. The chain arrangement of cells could facilitate cooperative interactions among individual bacteria, potentially enhancing their survival and metabolic efficiency in specialized niches.↵↵The specialized habitat of Lacticaseibacillus casei 21/1 suggests a potential role in specific ecological contexts, possibly related to fermentation processes or symbiotic relationships with host organisms. Its traits may be indicative of adaptations that allow it to thrive in particular microenvironments, contributing to its ecological niche. Understanding the metabolic pathways and interactions of this strain can provide insights into its functional roles in microbial communities and its applications in food production or probiotic formulations." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains 1051651 AFYK00000000.1 Bac0010215 Oribacterium parvum ACB1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Oribacterium Oribacterium parvum anaerobic 796943 AFZC00000000.2 Bac0010216 Oribacterium asaccharolyticum ACB7 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Oribacterium Oribacterium asaccharolyticum anaerobic 796944 AFZD00000000.1 Bac0010217 Desulfitobacterium hafniense DP7 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium hafniense 537010 AFZX00000000.1 Bac0010218 Leyella stercorea DSM 18206 "Leyella stercorea DSM 18206 is a Gram-negative bacterium belonging to the genus Leyella. This microorganism has been characterized for its distinct morphological and biochemical traits, although specific details beyond its Gram-negative nature are limited. The Gram-negative classification indicates that Leyella stercorea possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group and may influence its interactions with the environment.↵↵Due to the scarcity of additional detailed traits provided, further insights into its metabolic capabilities, environmental tolerances, or specific habitats remain unspecified. However, as a member of the microbial community, Leyella stercorea may play a role in the degradation of organic matter, particularly in environments where such bacteria are frequently found, such as in soil or decaying organic materials.↵↵The presence of Leyella stercorea in ecological niches rich in organic substrates suggests a potential contribution to nutrient cycling processes. This underscores the importance of Gram-negative bacteria in the decomposition of complex organic compounds, highlighting their role in maintaining ecosystem health and soil fertility. Further research would be necessary to elucidate the specific ecological functions and potential applications of Leyella stercorea in biotechnological contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Leyella Leyella stercorea negative 1002367 AFZZ00000000.1 Bac0010219 Fusobacterium sp. oral taxon 370 str. F0437 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. oral taxon 370 861452 AGAD00000000.1 Bac0010220 Desulfosporosinus sp. OT Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus sp. OT 913865 AGAF00000000.1 Bac0010221 Neisseria wadsworthii 9715 "Neisseria wadsworthii 9715 is a Gram-negative, spherical bacterium classified within the genus Neisseria. This microbe exhibits a microaerophilic oxygen requirement, indicating it thrives in environments with lower oxygen levels than those found in the atmosphere. The spherical morphology of N. wadsworthii 9715 is typical of many members of the Neisseria genus, which are characterized by their diplococcal arrangement. ↵↵The microaerophilic nature of N. wadsworthii 9715 suggests its potential adaptation to specific ecological niches, such as mucosal surfaces where oxygen concentration may be limited. This trait implies that N. wadsworthii 9715 could play a role in microbial communities within such environments, potentially influencing local microbial interactions and metabolic processes. Further investigation into the ecological roles and interactions of N. wadsworthii 9715 within its habitat could provide valuable insights into its function and significance in microbial ecology." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria wadsworthii Gram-negative sphere non-motile microaerophile 1030841 AGAZ00000000.1 Bac0010222 Peptoniphilus indolicus ATCC 29427 "Peptoniphilus indolicus ATCC 29427 is a Gram-positive anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This microbe is part of the Peptoniphilus genus, which is known for its role in the human microbiome, particularly in the gastrointestinal tract. As an anaerobe, P. indolicus relies on fermentation processes for energy production, which is typical of many gut-associated bacteria.↵↵The metabolic capabilities of P. indolicus suggest it may be involved in the breakdown of complex carbohydrates and proteins, contributing to the overall microbial ecosystem and nutrient cycling within its habitat. Its anaerobic nature indicates a potential adaptation to the low-oxygen environments commonly found in the intestines, where it may interact with other microbial species, influencing community dynamics and metabolic functions.↵↵Furthermore, the presence of P. indolicus in human-associated environments highlights its potential role in maintaining gut health, although the specific interactions and impacts on host physiology require further investigation. This bacterium exemplifies the intricate relationships that exist within the microbiome, where anaerobic organisms perform essential functions that support both microbial diversity and host well-being. Understanding the specific contributions of P. indolicus to gut metabolism could provide insights into the broader implications of anaerobic bacteria in human health and disease." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus indolicus Positive Anaerobe 997350 AGBB00000000.1 Bac0010223 Ectothiorhodospira sp. PHS-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Ectothiorhodospira Ectothiorhodospira sp. PHS-1 519989 AGBG00000000.1 Bac0010224 Flavonifractor plautii ATCC 29863 "Flavonifractor plautii ATCC 29863 is a Gram-positive, facultative anaerobic bacterium. This species exhibits versatility in its respiratory capabilities, allowing it to thrive in both aerobic and anaerobic environments. As a member of the genus Flavonifractor, it is characterized by its ability to ferment various carbohydrates, contributing to its metabolic flexibility.↵↵The Gram-positive nature of F. plautii indicates a thick peptidoglycan layer in its cell wall, which is typical of bacteria in this classification and may play a role in its resistance to certain environmental stresses. The facultative anaerobic lifestyle suggests that F. plautii can adapt to fluctuating oxygen levels, utilizing aerobic respiration when oxygen is available, while switching to fermentation or anaerobic respiration in its absence.↵↵Unique to F. plautii is its potential role in the degradation of plant-derived flavonoids, which may influence its ecological niche and interactions within its environment. This metabolic capability might position F. plautii as a player in the microbial community dynamics, particularly in environments rich in plant material, where it could contribute to the breakdown of complex organic compounds. Thus, its presence can be an indicator of specific ecological conditions, particularly in environments where plant biomass is abundant and microbial degradation processes are essential." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii Positive Facultative anaerobe 411475 AGCK00000000.1 Bac0010225 Yokenella regensburgei ATCC 43003 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Yokenella Yokenella regensburgei 1002368 AGCL00000000.1 Bac0010226 Treponema denticola SP33 "Treponema denticola SP33 is a Gram-negative, anaerobic bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of approximately 30.0°C and is typically found in host-associated environments. ↵↵As a member of the Treponema genus, T. denticola SP33 is notable for its helical structure, which is a hallmark of spirochetes. The anaerobic nature of this organism suggests its adaptation to environments devoid of oxygen, which may include various host-associated niches. ↵↵The association of T. denticola SP33 with host organisms highlights its potential role in specific ecological contexts, possibly influencing microbial community dynamics within the host. Understanding such interactions is crucial, as they may contribute to the overall health or disease state of the host organism, although the precise implications of this strain in such contexts require further investigation. The habitat preferences and anaerobic characteristics of T. denticola SP33 provide insights into the ecological strategies employed by bacteria within anaerobic niches, suggesting a potential for intricate relationships with other microbial inhabitants and the host environment." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999437 AGDZ00000000.1 Bac0010227 Eggerthia catenaformis OT 569 = DSM 20559 strain OT 569 "Eggerthia catenaformis OT 569, also known as DSM 20559 strain OT 569, is a Gram-positive anaerobic bacterium. This organism is characterized by its ability to thrive in environments devoid of oxygen, which is a critical aspect of its metabolic processes. As an anaerobe, E. catenaformis is likely to engage in fermentation pathways to derive energy, utilizing substrates typically found in anaerobic niches.↵↵The strain is notable for its cellular morphology, displaying a catenaform arrangement, which suggests a potential for specific cellular interactions or community dynamics in its natural habitat. While the precise ecological role of E. catenaformis OT 569 remains to be fully elucidated, its anaerobic nature indicates that it may contribute to the degradation of complex organic materials in environments such as the gastrointestinal tract of animals or other anaerobic ecosystems.↵↵In conclusion, Eggerthia catenaformis OT 569 exemplifies the diverse adaptations of microbes to anaerobic conditions, potentially playing a significant role in biogeochemical cycles where oxygen is limited. Further investigations into its metabolic capabilities and ecological interactions could enhance our understanding of its function within microbial communities." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Eggerthia Eggerthia catenaformis Positive Anaerobe 31973 AGEJ00000000.1 Bac0010228 Staphylococcus sp. HGB0015 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp. HGB0015 1078083 AGEO00000000.1 Bac0010229 Streptomyces sp. HGB0020 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. HGB0020 1078086 AGER00000000.1 Bac0010230 Parabacteroides sp. HGS0025 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. HGS0025 1078087 AGES00000000.1 Bac0010231 Bacteroides sp. HPS0048 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. HPS0048 1078089 AGEU00000000.1 Bac0010232 Coprococcus sp. HPP0074 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. HPP0074 1078090 AGEV00000000.1 Bac0010233 Coprococcus sp. HPP0048 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. HPP0048 1078091 AGEW00000000.1 Bac0010234 Lentilactobacillus parafarraginis F0439 "Lentilactobacillus parafarraginis F0439 is a rod-shaped bacterium that belongs to the genus Lentilactobacillus. This species is characterized by its distinctive rod morphology, which is a common trait within the Lactobacillaceae family. Although the specific metabolic capabilities and ecological niches of L. parafarraginis F0439 have not been detailed, members of the Lentilactobacillus genus are generally known for their role in various fermentation processes, particularly in dairy and plant-based products.↵↵The rod shape of L. parafarraginis F0439 may confer advantages in terms of surface area to volume ratio, potentially facilitating efficient nutrient uptake and growth in diverse environments. Additionally, the morphology of this microbe may influence its interactions with other microbial communities, as rod-shaped bacteria often exhibit different ecological dynamics compared to coccoid forms.↵↵While specific information regarding the strain's applications or benefits in food production remains to be elucidated, the presence of Lentilactobacillus species in fermented foods suggests a potential for contribution to flavor development, texture enhancement, or probiotic properties. Further research could explore the ecological roles of L. parafarraginis F0439 in fermentation processes and its interactions within mixed microbial communities, potentially unveiling unique applications in food science and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus parafarraginis Rod 797515 AGEY00000000.1 Bac0010235 Desulfovibrio sp. A2 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. A2 298701 AGFG00000000.1 Bac0010236 Malacoplasma iowae 695 Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma iowae 1048830 AGFP00000000.1 Bac0010237 Lactococcus lactis subsp. lactis CNCM I-1631 "Lactococcus lactis subsp. lactis CNCM I-1631 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism and thrives optimally at a temperature of 40.0°C. This strain is part of a diverse group of lactic acid bacteria commonly found in various habitats, including dairy environments, where it plays a crucial role in fermentation processes. ↵↵As a member of the Lactococcus genus, L. lactis subsp. lactis CNCM I-1631 is notable for its ability to ferment lactose, producing lactic acid, which contributes to the preservation and flavor development in fermented dairy products. The strain's adaptability to both aerobic and anaerobic conditions allows it to flourish in environments with fluctuating oxygen levels, further enhancing its utility in food biotechnology.↵↵The ecological versatility of L. lactis subsp. lactis CNCM I-1631 underscores its significance in both natural and industrial fermentation processes. Its presence in multiple habitats suggests a robust capacity for survival and adaptation, potentially enabling it to interact with various microbial communities. This characteristic may contribute to its functional applications in food science, particularly in the development of starter cultures for cheese production and other fermented products, where specific metabolic traits can influence the overall quality and characteristics of the final product." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1042402 AGHX00000000.1 Bac0010238 Halomonas sp. HAL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. HAL1 550984 AGIB00000000.1 Bac0010239 Methylorubrum extorquens DSM 13060 "Methylorubrum extorquens DSM 13060 is a Gram-negative, rod-shaped bacterium characterized by its ability to utilize methanol and other one-carbon compounds as energy sources, classifying it as a methylotroph. This species typically exists in pairs or as single cells, reflecting its versatile adaptability in various habitats. M. extorquens thrives optimally at a temperature of 25.0 °C, indicating a preference for moderate environmental conditions.↵↵As a facultative aerobe, Methylorubrum extorquens can grow in both the presence and absence of oxygen, allowing it to exploit a range of ecological niches. Its metabolic versatility not only supports its survival in diverse environments but also highlights its potential role in carbon cycling and bioremediation processes. This adaptability to varying oxygen levels and its specialized metabolic pathways may contribute to its ecological significance in environments enriched with methanol and other methylated substrates, potentially influencing local microbial community dynamics and carbon flux." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum extorquens Negative Rod Yes 1 2 Facultative aerobe 25 Methylotroph Mesophilic Multiple Free living Pairs - Singles 882800 AGJK00000000.1 Bac0010240 Streptococcus pneumoniae GA47502 "Streptococcus pneumoniae GA47502 is a Gram-positive coccus that typically arranges itself in chains or pairs. This organism thrives at an optimal temperature of 30.0°C and possesses the ability to grow under both aerobic and anaerobic conditions, classifying it as a facultative anaerobe. S. pneumoniae GA47502 is found in various habitats, indicating its adaptability to different environmental conditions.↵↵The organism's characteristic coccoid shape and chain arrangement are notable features that facilitate its identification in laboratory settings. The facultative anaerobic nature of S. pneumoniae GA47502 suggests that it can effectively exploit diverse ecological niches, allowing it to survive in both oxygen-rich and oxygen-poor environments. This adaptability may enhance its potential interactions with other microbial populations and its resilience in fluctuating habitats.↵↵Understanding the ecological versatility of S. pneumoniae GA47502 may provide insights into its role within microbial communities, particularly in environments where competition for resources is intense. Further studies could elucidate the specific interactions and dynamics that S. pneumoniae GA47502 engages in within its habitats, broadening the understanding of its ecological significance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 760839 AGNV00000000.1 Bac0010241 Lentilactobacillus kisonensis F0435 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus kisonensis 797516 AGRJ00000000.1 Bac0010242 Lachnospiraceae bacterium oral taxon 082 str. F0431 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium oral taxon 082 861454 AGRL00000000.1 Bac0010243 Streptomyces sp. W007 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. W007 1055352 AGSW00000000.1 Bac0010244 Acidovorax sp. NO-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. NO-1 512030 AGTS00000000.1 Bac0010245 Mycolicibacterium thermoresistibile ATCC 19527 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium thermoresistibile 1078020 AGVE00000000.1 Bac0010246 Sinorhizobium meliloti CCNWSX0020 "Sinorhizobium meliloti CCNWSX0020 is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats, exhibiting optimal growth at a temperature of 25.0°C. As an aerobic organism, it requires oxygen for its metabolic processes, positioning it within environments that can support its respiratory needs.↵↵This strain is notable for its ability to form symbiotic relationships with leguminous plants, particularly within the Medicago genus, contributing significantly to nitrogen fixation in soil. The ecological role of S. meliloti CCNWSX0020 extends to enhancing soil fertility and promoting plant growth through its interactions with host plants. This mutualistic association is crucial for sustainable agriculture, particularly in arid and semi-arid regions where nitrogen availability is often limited.↵↵The adaptability of S. meliloti CCNWSX0020 to multiple habitats underscores its potential utility in agricultural practices, especially in systems that aim to improve nitrogen content in soils through biological means. Future research could further elucidate its specific interactions with different plant species and its overall impact on soil health and crop productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 1107881 AGVV00000000.1 Bac0010247 Agrobacterium tumefaciens 5A "Agrobacterium tumefaciens 5A is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats, demonstrating its adaptability to multiple environmental conditions. This microbe is classified as an aerobe, indicating that it requires oxygen for its metabolic processes, and it exhibits optimal growth at a temperature of 25.0°C. ↵↵The ability of Agrobacterium tumefaciens 5A to thrive in diverse environments suggests a broad ecological versatility, potentially allowing it to interact with various plant species and soil types. This adaptability may play a significant role in its ecological niche, where it might contribute to soil health and nutrient cycling. The aerobic nature of this organism implies that it may be involved in aerobic degradation processes, which could be beneficial in bioremediation or agricultural contexts. ↵↵Overall, the traits of Agrobacterium tumefaciens 5A highlight its ecological importance, particularly in environments where oxygen is available, and its potential contributions to both natural ecosystems and agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1107544 AGVZ00000000.1 Bac0010248 Bartonella bovis 91-4 BBbNrIrPeM15_c1497A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella bovis 155194 AGWA00000000.1 Bac0010249 Gleimia europaea ACS-120-V-Col10b Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Gleimia Gleimia europaea microaerophile 883069 AGWN00000000.1 Bac0010250 Aeromonas dhakensis strain SSU "Aeromonas dhakensis strain SSU is a Gram-negative, rod-shaped bacterium that demonstrates optimal growth at a temperature of 32.0°C and requires oxygen for metabolism, indicating its aerobic nature. This strain, part of the broader Aeromonas genus, is characterized by its morphological and physiological traits, which are typical of many species within this group. The Gram-negative classification suggests that it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, a feature that may influence its interactions with the environment and other organisms.↵↵Aeromonas species are often found in aquatic environments, suggesting that strain SSU may inhabit similar niches, such as freshwater or brackish ecosystems. The bacterium's optimal growth temperature aligns with the conditions found in many temperate aquatic habitats, where it may play a role in nutrient cycling and microbial community dynamics. Given its aerobic requirement, A. dhakensis strain SSU is likely to thrive in oxygen-rich environments, which could facilitate its involvement in various biochemical processes.↵↵The ecological role of Aeromonas dhakensis strain SSU may extend to interactions with other microorganisms in its habitat, potentially influencing community structure and functioning. Further studies could elucidate the specific ecological contributions of this strain, particularly in relation to its metabolic capabilities and interactions within diverse microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas dhakensis Gram-negative rod aerobic 32 mesophilic 196024 AGWR00000000.1 Bac0010251 Aeromonas veronii AMC34 "Aeromonas veronii AMC34 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This species is primarily found in sediment environments, suggesting a potential role in the microbial community dynamics within aquatic ecosystems. As an aerobic organism, A. veronii AMC34 requires oxygen for its metabolic processes, which may influence its distribution and activity within oxygen-rich sediment layers.↵↵The habitat of A. veronii AMC34 provides insights into its ecological functions, particularly in nutrient cycling and organic matter decomposition. The presence of this bacterium in sediment indicates its involvement in the breakdown of various organic compounds, potentially contributing to the overall health and stability of aquatic ecosystems. The ability to thrive in sediment environments may also suggest a capacity for interacting with other microbial species, facilitating complex microbial interactions that are essential for maintaining ecological balance.↵↵In summary, Aeromonas veronii AMC34 exemplifies a microbial inhabitant of sedimentary habitats, showcasing the diverse roles that Gram-negative bacteria play in aquatic environments. Its aerobic nature and specific habitat preferences may position it as a key player in sedimentary biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles 1073383 AGWU00000000.1 Bac0010252 Afipia broomeae ATCC 49717 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia broomeae aerobic 883078 AGWX00000000.1 Bac0010253 Bacteroides caccae CL03T12C61 "Bacteroides caccae CL03T12C61 is a Gram-negative, anaerobic bacterium predominantly found in the gut environment. This microbe is part of the diverse gut microbiota, which plays a critical role in digestion and overall gut health. As an anaerobe, B. caccae CL03T12C61 thrives in oxygen-depleted conditions, typical of the intestinal tract, where it contributes to various metabolic processes, including the fermentation of complex carbohydrates.↵↵The presence of B. caccae CL03T12C61 in the gut is significant, as members of the Bacteroides genus are known for their ability to break down polysaccharides that are indigestible by human enzymes, thereby facilitating nutrient absorption and energy production for the host. Furthermore, these bacteria can influence the gut environment by producing short-chain fatty acids (SCFAs), which are beneficial to host health and can impact immune responses.↵↵This strain, like other Bacteroides species, may serve as a crucial player in maintaining gut homeostasis, modulating the microbiome composition, and contributing to the overall metabolic health of the host. The specific ecological role of B. caccae CL03T12C61 within the complex community of gut microbes highlights the intricate interdependencies that exist among gut inhabitants and their collective impact on human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe gut 997873 AGXF00000000.1 Bac0010254 Bacteroides cellulosilyticus CL02T12C19 "Bacteroides cellulosilyticus CL02T12C19 is a Gram-negative, anaerobic bacterium known for its ability to degrade complex carbohydrates, particularly cellulose. This strain thrives in environments devoid of oxygen, which is a characteristic feature of many members of the Bacteroides genus. ↵↵The negative Gram stain indicates that B. cellulosilyticus possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of Gram-negative bacteria. This structural composition may contribute to its resilience in anaerobic conditions, allowing it to effectively colonize and function within environments such as the gastrointestinal tract of host organisms or other anoxic habitats where cellulose is prevalent. ↵↵B. cellulosilyticus is particularly noteworthy for its potential role in the breakdown of plant material, which may have implications for nutrient cycling in various ecosystems. By hydrolyzing cellulose, this microbe can contribute to the conversion of plant biomass into simpler sugars, which can then be utilized by other organisms in the food web. This activity underscores its ecological significance in promoting the degradation of organic matter and facilitating nutrient flow in anaerobic environments, thus highlighting its potential importance in both natural and engineered systems aimed at biomass conversion and waste treatment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus Negative Anaerobe 997874 AGXG00000000.1 Bac0010255 Phocaeicola dorei CL03T12C01 "Phocaeicola dorei CL03T12C01 is a nonsporulating, Gram-negative rod that thrives optimally at a temperature of 37.0°C and relies on a chemoheterotrophic metabolism for energy. This anaerobic microbe is found in multiple habitats, indicating a versatile ecological presence. The ability to grow in various environments suggests that P. dorei CL03T12C01 may play significant roles in microbial communities associated with diverse substrates, potentially contributing to nutrient cycling in anaerobic conditions. Further research into its specific ecological interactions could provide insights into its functional roles in these habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 997877 AGXI00000000.1 Bac0010256 Bacteroides fragilis CL07T12C05 "Bacteroides fragilis CL07T12C05 is a Gram-negative, rod-shaped bacterium that typically exists as single cells within host-associated environments. This strain is optimally active at a temperature of 37.0°C, which aligns with the physiological conditions found within mammalian hosts. As a chemoorganotroph, B. fragilis CL07T12C05 derives its energy from organic compounds, a trait that reflects its adaptation to nutrient-rich environments typically present in the gastrointestinal tract.↵↵This organism is classified as an anaerobe, indicating its growth and metabolic activities occur in the absence of oxygen. The anaerobic nature of B. fragilis CL07T12C05 suggests it plays a role in maintaining the delicate balance of microbial communities in the host, particularly in the gut, where oxygen levels are low. The ability to thrive in anaerobic conditions and utilize organic substrates is significant for its ecological niche, potentially contributing to the degradation of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health.↵↵Understanding the specific traits of Bacteroides fragilis CL07T12C05 can provide insights into its role in the microbiome, particularly regarding its interactions with host metabolism and immune functions. Further investigation into this strain could elucidate its contributions to gut homeostasis and its potential implications for health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 997883 AGXN00000000.1 Bac0010257 Bacteroides fragilis CL05T12C13 "Bacteroides fragilis CL05T12C13 is a Gram-negative, rod-shaped bacterium that typically exists in a single-cell arrangement. This anaerobic microbe is classified as a chemoorganotroph, deriving its energy from organic compounds, and has an optimal growth temperature of 37.0°C, which aligns with the typical conditions found within the mammalian host environment. ↵↵As a member of the Bacteroides genus, B. fragilis CL05T12C13 is predominantly host-associated, suggesting a symbiotic relationship with its host, likely contributing to gut microbiota composition and function. The anaerobic nature of this organism indicates that it thrives in low-oxygen environments, which is characteristic of the intestinal tract where it plays a role in the fermentation of complex carbohydrates and the production of short-chain fatty acids. ↵↵Understanding the specific traits of Bacteroides fragilis CL05T12C13 can provide insights into its role in maintaining gut health and its potential influence on host metabolism. The ability of this bacterium to adapt to anaerobic conditions while participating in essential biochemical processes highlights its importance in the microbiome, particularly in the context of nutrient absorption and immune system modulation." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 997881 AGXP00000000.1 Bac0010258 Bacteroides ovatus CL02T12C04 "Bacteroides ovatus CL02T12C04 is a Gram-negative anaerobic bacterium characterized by its inability to grow in the presence of oxygen. This microbe is part of the Bacteroides genus, which is known for its predominance in the intestinal microbiota of humans and other animals, playing a significant role in the fermentation of complex carbohydrates. The anaerobic nature of B. ovatus CL02T12C04 suggests a metabolic adaptation that allows it to thrive in oxygen-free environments, such as the human gut, where it contributes to the breakdown of dietary fibers.↵↵The Gram-negative classification of B. ovatus CL02T12C04 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that often influences its interactions with other microorganisms and the host immune system. Such traits are critical for its survival and functionality within its niche.↵↵Understanding the anaerobic lifestyle of Bacteroides ovatus CL02T12C04 can provide insights into its potential roles in gut health and the overall balance of the microbiome, particularly in fermentation processes that yield short-chain fatty acids, which are beneficial for host metabolism. This highlights the importance of anaerobic bacteria like B. ovatus in maintaining gut homeostasis and their potential implications in dietary and therapeutic contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe 997885 AGXT00000000.1 Bac0010259 Bacteroides finegoldii CL09T03C10 "Bacteroides finegoldii CL09T03C10 is a Gram-negative, anaerobic bacterium that is part of the diverse Bacteroides genus, which is known for its role in the human gut microbiome. As an anaerobe, B. finegoldii CL09T03C10 thrives in environments devoid of oxygen, which is characteristic of many species within the Bacteroides group. This metabolic adaptation allows it to perform fermentation processes, utilizing various substrates typically found in the gastrointestinal tract.↵↵The Gram-negative nature of B. finegoldii CL09T03C10 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this bacterial classification. Such structural features often confer resistance to certain antibiotics and influence the bacterium's interactions within its microbial community.↵↵While detailed ecological roles and specific interactions with host organisms have not been elucidated, the presence of Bacteroides species, including B. finegoldii CL09T03C10, in the gut microbiome is generally associated with the breakdown of complex carbohydrates and the maintenance of gut health. The metabolic products from these processes, such as short-chain fatty acids, may contribute to gut homeostasis and have implications for host metabolism. Additionally, the ability to thrive in anaerobic conditions suggests a potential adaptability to various niches within the gut environment, highlighting the ecological versatility of this species within the complex interplay of gut microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides finegoldii Negative Anaerobe 997888 AGXW00000000.1 Bac0010260 Bergeyella zoohelcum ATCC 43767 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Bergeyella Bergeyella zoohelcum 883096 AGYA00000000.1 Bac0010261 Enterocloster bolteae 90B8 "Enterocloster bolteae 90B8 is a Gram-positive, rod-shaped bacterium characterized by its anaerobic metabolism and chemoheterotrophic energy source. This microbe does not form spores, which distinguishes it from many other bacteria that typically utilize sporulation as a survival strategy. E. bolteae 90B8 is found in multiple habitats, suggesting a versatile adaptability to various anaerobic environments.↵↵As a member of the microbiota, E. bolteae 90B8 plays a crucial role in the decomposition of organic matter, contributing to nutrient cycling in its ecosystems. Its ability to thrive in anaerobic conditions indicates its potential importance in environments where oxygen is limited, such as in the human gut or in certain soil types. The metabolic pathways utilized by this bacteria are likely to facilitate interactions with other microbial communities, potentially influencing the overall dynamics of these ecosystems.↵↵Understanding the traits of Enterocloster bolteae 90B8 not only highlights its ecological role but also emphasizes the diversity of metabolic strategies employed by anaerobic bacteria. This diversity is essential for maintaining ecological balance and nutrient availability in various environments where these bacteria are present." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster bolteae Positive Rod No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 997897 AGYG00000000.1 Bac0010262 Enterocloster bolteae 90A9 "Enterocloster bolteae 90A9 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This microbe is capable of utilizing a variety of organic compounds as energy sources, reflecting its adaptability to multiple habitats. The strictly anaerobic nature of E. bolteae 90A9 implies that it relies on fermentation or other anaerobic metabolic pathways for energy production, which is a common trait among many members of the Clostridia class.↵↵As a member of the microbial community, Enterocloster bolteae 90A9 plays a potential role in various ecological niches, particularly in environments where organic matter is abundant and oxygen is limited. Its ability to thrive in these anaerobic conditions suggests it may contribute to the decomposition processes and nutrient cycling in those ecosystems. Further investigation into the specific substrates utilized by E. bolteae 90A9 and its interactions with other microorganisms could provide deeper insights into its ecological functions and relevance within its habitat." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster bolteae Positive Rod No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 997894 AGYH00000000.1 Bac0010263 [Clostridium] clostridioforme 90A6 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis 999406 AGYL00000000.1 Bac0010264 Delftia acidovorans CCUG 274B "Delftia acidovorans CCUG 274B is a Gram-negative, rod-shaped bacterium that thrives optimally at 30.0°C and is classified as an aerobic organism, requiring oxygen for its metabolic processes. This microbe exhibits a versatile habitat, indicating its ability to adapt to varied environmental conditions. ↵↵The Gram-negative characteristic of Delftia acidovorans suggests a complex cell wall structure, which is typically associated with a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature may confer specific advantages in its ecological niches, such as resistance to certain antimicrobial agents.↵↵Given its aerobic nature, Delftia acidovorans is likely involved in various biogeochemical cycles, particularly those related to carbon and nitrogen, as aerobic bacteria play crucial roles in the decomposition of organic matter and the oxidation of inorganic compounds. This metabolic versatility points to its potential utility in bioremediation efforts, where aerobic microorganisms are employed to degrade pollutants in contaminated environments. ↵↵Overall, Delftia acidovorans CCUG 274B exemplifies the adaptability of bacteria in diverse habitats, highlighting its potential significance in ecological processes and environmental applications." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Multiple Free living 883101 AGYX00000000.1 Bac0010265 Delftia acidovorans CCUG 15835 "Delftia acidovorans CCUG 15835 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 30.0°C. This organism is known to inhabit a variety of environments, indicating its adaptability and potential for survival in diverse ecological niches. ↵↵As a member of the genus Delftia, this strain showcases characteristics typical of aerobic bacteria, relying on oxygen for its metabolic processes. The Gram-negative cell wall structure of D. acidovorans is indicative of its permeability and resistance to certain antibiotics, which is a common trait among bacteria in this group. ↵↵Delftia acidovorans has been studied for its biotechnological applications, particularly in bioremediation, due to its ability to degrade various organic compounds. Its versatility in utilizing different habitats suggests that it may play a role in nutrient cycling and the breakdown of pollutants in diverse ecosystems.↵↵The capacity of D. acidovorans CCUG 15835 to thrive under aerobic conditions and in multiple habitats underscores its ecological significance, potentially contributing to the maintenance of microbial diversity and function in environments impacted by anthropogenic activities. This adaptability may allow it to participate in microbial communities that respond to environmental changes, highlighting its role in ecosystem resilience." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Multiple Free living 883100 AGYY00000000.1 Bac0010266 Facklamia hominis CCUG 36813 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Facklamia Facklamia hominis microaerophile 883111 AGZD00000000.1 Bac0010267 Parabacteroides merdae CL03T12C32 "Parabacteroides merdae CL03T12C32 is a Gram-negative, strictly anaerobic bacterium. As a member of the genus Parabacteroides, this microbe is characterized by its inability to grow in the presence of oxygen, indicating a specialized metabolic pathway that relies on anaerobic conditions. This trait is typical of organisms that inhabit environments devoid of oxygen, such as the human gut microbiome, where they may play a role in fermentative processes.↵↵The Gram-negative nature of P. merdae CL03T12C32 suggests a complex cell wall structure, typically comprising an inner membrane, a thin peptidoglycan layer, and an outer membrane containing lipopolysaccharides. This structural characteristic may influence its interactions with the host's immune system and its resistance to certain antibiotics.↵↵The ecological role of P. merdae CL03T12C32 could be significant in maintaining gut homeostasis and contributing to the breakdown of complex carbohydrates, which can provide essential nutrients for both the bacteria and the host. Furthermore, the strict anaerobic requirement of this bacterium underscores its specialized adaptation to niche environments within the gastrointestinal tract, where it may interact with other microbial species to form complex communities. This cooperative behavior may be critical for the overall metabolic functionality and health of the gut microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 999420 AGZQ00000000.1 Bac0010268 Propionimicrobium lymphophilum ACS-093-V-SCH5 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionimicrobium Propionimicrobium lymphophilum 883161 AGZR00000000.1 Bac0010269 Scardovia wiggsiae F0424 "Scardovia wiggsiae F0424 is a Gram-positive, ovoid-shaped bacterium that exhibits non-spore-forming characteristics. This microbe is part of the diverse microbial community found in various environments, and its distinct morphology and Gram staining properties suggest a specific adaptation to its ecological niche. The Gram-positive nature of S. wiggsiae F0424 indicates a thick peptidoglycan layer, which may confer resilience against environmental stressors and influence its interactions with other microbial species.↵↵The ovoid shape of Scardovia wiggsiae F0424 can be significant in its physiological and ecological roles, potentially affecting its motility, colonization ability, and nutrient acquisition strategies. Non-spore-forming bacteria like S. wiggsiae F0424 typically rely on alternative survival mechanisms, such as forming biofilms or utilizing available resources efficiently in their habitat.↵↵Understanding the traits of Scardovia wiggsiae F0424 contributes to a broader comprehension of microbial diversity and adaptation. Its Gram-positive status and ovoid morphology may play essential roles in its ecological interactions, particularly in environments where competition with other microorganisms is prevalent. The unique combination of these traits could provide insights into the ecological strategies employed by non-spore-forming bacteria in maintaining their populations in various ecosystems." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Scardovia Scardovia wiggsiae Gram-positive ovoid non-motile non-spore-forming 857290 AGZS00000000.1 Bac0010270 Treponema denticola SP23 "Treponema denticola SP23 is a Gram-negative, spiral-shaped bacterium that typically exists as single cells. This organism thrives optimally at a temperature of 30.0°C and is classified as an anaerobe, indicating its requirement for environments devoid of oxygen. Treponema denticola SP23 is host-associated, suggesting a specialized niche within the host organism where it may play a role in specific biological interactions.↵↵The spiral morphology of T. denticola SP23 is characteristic of the genus Treponema, which is known for its unique motility and flexibility due to a periplasmic flagella arrangement. While the ecological roles of Treponema species often relate to their involvement in various host-associated environments, the specific ecological interactions of T. denticola SP23 remain to be fully elucidated. ↵↵Notably, the anaerobic nature of T. denticola SP23 highlights its adaptation to microenvironments within the host that are low in oxygen, such as periodontal pockets in the oral cavity, which can influence microbial community dynamics and host health. Understanding the precise ecological role of T. denticola SP23 could provide valuable insights into the balance of microbial ecosystems in host-associated environments." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999435 AHAB00000000.1 Bac0010271 Rhodococcus pyridinivorans AK37 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus pyridinivorans 1114960 AHBW00000000.1 Bac0010272 Pseudoalteromonas marina strain DSM 17587 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas marina 267375 AHCB00000000.3 Bac0010273 Bacillus cereus TIAC219 "Bacillus cereus TIAC219 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This microbe thrives optimally at a temperature of 25.0°C, suggesting its adaptation to moderate environmental conditions. B. cereus species are known to inhabit diverse ecological niches, which may include soil, water, and plant surfaces, indicating a wide-ranging capacity for survival and colonization in various habitats.↵↵The filamentous arrangement of cells within chains may facilitate interactions within microbial communities, potentially enhancing nutrient acquisition or communication among cells. The aerobic nature of B. cereus TIAC219 implies a reliance on oxygen for metabolic processes, which may influence its ecological role, particularly in oxygen-rich environments. ↵↵Overall, the traits observed in Bacillus cereus TIAC219 highlight its adaptability and potential versatility in different habitats, positioning it as a significant player in microbial ecosystems. Understanding its environmental interactions and physiological characteristics could provide insights into its ecological contributions and potential applications in biotechnology or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 718222 AHCJ00000000.1 Bac0010274 Bacillus cereus VD142 "Bacillus cereus VD142 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This microorganism thrives optimally at a temperature of 25.0°C, indicating its preference for moderate environmental conditions. Bacillus cereus VD142 is found in a variety of habitats, suggesting a versatile ecological adaptability that allows it to thrive in diverse environments.↵↵The ability of this strain to grow in multiple habitats may reflect its metabolic flexibility and capacity to utilize various substrates, which is characteristic of many members of the Bacillus genus. Additionally, its aerobic nature indicates that it requires oxygen for growth, which could influence its distribution in natural environments, particularly in soil and decaying organic matter where oxygen availability is sufficient.↵↵The formation of cellular chains may provide advantages in terms of nutrient acquisition and biofilm formation, potentially aiding in its survival in challenging conditions. Overall, the traits exhibited by Bacillus cereus VD142 highlight its ecological versatility and suggest potential roles in nutrient cycling within its various habitats. Further research could elucidate its specific interactions within microbial communities and its contributions to ecosystem processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 718224 AHCL00000000.2 Bac0010275 Bacillus cereus BAG1O-3 "Bacillus cereus BAG1O-3 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobe, requiring oxygen for growth. This strain is optimally adapted to a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. The ability to thrive in multiple habitats indicates a versatile ecological niche, which may include soil, water, and various organic materials.↵↵As a member of the Bacillus genus, B. cereus BAG1O-3 may exhibit the capacity for spore formation, a trait common among Bacillus species that enhances survival in fluctuating environmental conditions. The formation of chains could facilitate nutrient acquisition or protection against environmental stressors. This structural arrangement may also influence its interactions with other microorganisms and the surrounding ecosystem.↵↵The ecological implications of B. cereus BAG1O-3's traits suggest that it may play a role in nutrient cycling and microbial community dynamics within its habitats. Its aerobe classification indicates a reliance on oxygen, which could limit its distribution in anaerobic environments but may also position it as a key player in aerobic degradation processes. Overall, the adaptability of B. cereus BAG1O-3 to various environments underscores its potential significance in ecological interactions, particularly in aerobic conditions where it may contribute to the breakdown of organic matter and nutrient recycling." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053169 AHCP00000000.1 Bac0010276 Bacillus cereus BAG1X1-2 "Bacillus cereus BAG1X1-2 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. ↵↵Bacillus cereus species are known to inhabit diverse environments, which aligns with the multiple habitats reported for BAG1X1-2. This broad ecological distribution may contribute to its adaptability and potential utility in various biotechnological applications. The aerobic nature of this strain indicates that it requires oxygen for growth, which may influence its distribution in environments where oxygen levels are variable.↵↵Given its morphological traits and growth requirements, Bacillus cereus BAG1X1-2 may play a role in nutrient cycling and organic matter decomposition in its habitats, highlighting its ecological relevance in maintaining ecosystem functions. Further studies could elucidate its specific interactions within these environments and its potential applications in industrial or environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053171 AHCR00000000.1 Bac0010277 Bacillus cereus BAG1X1-3 "Bacillus cereus BAG1X1-3 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain exhibits an aerobic metabolism, thriving in environments where oxygen is available. Optimal growth conditions for B. cereus BAG1X1-3 are observed at a temperature of 25.0°C, indicating its preference for moderate temperatures. ↵↵The habitat of B. cereus BAG1X1-3 is diverse, suggesting that this bacterium is well-adapted to various ecological niches. The capacity of B. cereus species to inhabit multiple environments may contribute to its resilience and versatility in different biological contexts. While specific pathogenicity and ecological roles of BAG1X1-3 are not addressed here, its aerobic nature and ability to form chains could imply potential interactions with other microorganisms within its habitat. These traits may also play a role in the microbial dynamics of environments such as soil or decaying organic matter, where competition and cooperation among microbial community members are crucial for ecosystem functioning." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053172 AHCS00000000.1 Bac0010278 Bacillus cereus BAG1X2-2 "Bacillus cereus BAG1X2-2 is a Gram-positive, rod-shaped bacterium that typically forms chains and demonstrates aerobic respiration. This strain exhibits optimal growth at a temperature of 25.0°C, indicating a preference for moderate temperature conditions. Its ability to thrive in multiple habitats suggests a versatile ecological role, potentially allowing it to adapt to various environmental niches.↵↵As a member of the Bacillus genus, B. cereus BAG1X2-2 may contribute to nutrient cycling within its habitats, particularly in soil and organic matter, where it can play a role in the decomposition of complex organic compounds. The aerobic nature of this bacterium implies that it requires oxygen for its metabolic processes, which is essential in environments where oxygen is readily available. ↵↵Understanding the traits of B. cereus BAG1X2-2 can provide insights into its ecological functions, particularly in biogeochemical processes and interactions within microbial communities. Further research may elucidate its specific roles in ecosystem dynamics and its potential applications in biotechnology or bioremediation." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053174 AHCU00000000.1 Bac0010279 Bacillus cereus BAG3X2-1 "Bacillus cereus BAG3X2-1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain demonstrates an optimal growth temperature of 25.0°C, indicating a preference for moderate environmental temperatures. The habitat of Bacillus cereus BAG3X2-1 is characterized as diverse, suggesting its ability to adapt to various ecological niches.↵↵As a member of the Bacillus genus, this strain likely possesses traits commonly associated with spore formation, which may enhance its survival in fluctuating environments. The ability of Bacillus cereus BAG3X2-1 to grow in multiple habitats highlights its ecological versatility and potential role in nutrient cycling within those environments. Given the known characteristics of the Bacillus cereus group, this strain may contribute significantly to the microbiological dynamics of its habitats, particularly in the decomposition of organic matter and the cycling of key nutrients." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053183 AHDD00000000.1 Bac0010280 Bacillus cereus BAG6O-2 "Bacillus cereus BAG6O-2 is a Gram-positive, rod-shaped bacterium that exhibits a characteristic arrangement of cells in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, requiring oxygen for its metabolic processes. The versatility of B. cereus BAG6O-2 is underscored by its ability to inhabit multiple environments, suggesting a broad ecological adaptability.↵↵The chain arrangement of cells may contribute to its survival strategies in various habitats, potentially enhancing its ability to form biofilms or resist environmental stresses. The optimal growth temperature indicates a preference for moderate conditions, which may align with its natural occurrences in soil and plant-associated environments.↵↵Notably, the aerobe classification suggests that B. cereus BAG6O-2 may play a role in oxygen-rich ecosystems, which could influence nutrient cycling and interactions within microbial communities. As a member of the Bacillus genus, this strain might also exhibit traits related to sporulation, although this specific trait is not detailed in the provided data. Overall, the ecological implications of Bacillus cereus BAG6O-2 reflect its potential contributions to environmental processes and its adaptability to different ecological niches." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053193 AHDN00000000.1 Bac0010281 Bacillus cereus BAG6X1-2 "Bacillus cereus BAG6X1-2 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain is optimally active at a temperature of 25.0°C, indicating a preference for moderate ambient conditions. B. cereus species are known to inhabit a variety of environments, suggesting that BAG6X1-2 is likely to be found in diverse ecological niches, ranging from soil to plant surfaces and potentially in association with various organic materials.↵↵The aerobic nature of Bacillus cereus BAG6X1-2 implies that it relies on oxygen for its metabolic processes, which may influence its distribution and interactions within its habitat. The ability to form chains could facilitate its colonization in certain environments, providing a structural advantage in biofilm formation or nutrient acquisition.↵↵Overall, the characteristics of Bacillus cereus BAG6X1-2 underscore its adaptability to various habitats, potentially allowing it to play a role in nutrient cycling and organic matter decomposition within its ecological context. This adaptability highlights the importance of studying such strains, as they may contribute to ecosystem functioning and resilience in their respective environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053195 AHDP00000000.1 Bac0010282 Bacillus cereus HuA4-10 "Bacillus cereus HuA4-10 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. This strain thrives optimally at a temperature of 25.0°C, suggesting it is well-suited for environments that maintain moderate temperatures. ↵↵The habitat of B. cereus HuA4-10 is diverse, which may include soil, water, and various organic substrates, reflecting the species' ability to adapt to multiple ecological niches. The formation of chains is characteristic of the genus Bacillus, which can influence its motility and interaction with other microorganisms in its environment. ↵↵Given its aerobic nature, B. cereus HuA4-10 may play a role in nutrient cycling, particularly in aerobic environments where organic matter decomposition occurs. Its adaptability to various habitats underscores the ecological flexibility of Bacillus species, contributing to their ecological significance in terrestrial ecosystems. This adaptability may provide insights into the bacterium's potential utility in biotechnological applications, such as bioremediation or agricultural enhancement, where aerobic processes are beneficial." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053206 AHEA00000000.1 Bac0010283 Bacillus cereus HuB4-4 "Bacillus cereus HuB4-4 is a Gram-positive, rod-shaped bacterium that typically exists in chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0 °C, indicating a preference for mesophilic environments. Bacillus cereus species are known for their ability to inhabit diverse habitats, which may include soil, water, and various plant materials, allowing them to play significant roles in nutrient cycling and organic matter decomposition.↵↵The aerobic nature of Bacillus cereus HuB4-4 suggests that it requires oxygen for growth and metabolism, a trait that can influence its ecological niche and interactions with other microorganisms. The presence of Bacillus cereus in multiple habitats underscores its versatility and adaptability, potentially contributing to its role in various ecological processes. ↵↵Moreover, the chain arrangement of the bacterial cells may provide advantages in certain environments, such as enhanced survival during nutrient scarcity or increased efficiency in colonization of surfaces. The traits exhibited by Bacillus cereus HuB4-4 reflect a microbial organism well-suited to thrive in a variety of ecological contexts, potentially influencing soil health and ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053211 AHEF00000000.1 Bac0010284 Bacillus cereus VD045 "Bacillus cereus VD045 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobic organism, requiring oxygen for its growth and metabolic processes. ↵↵Bacillus cereus species are known for their ecological versatility, and VD045 is no exception, as it can inhabit multiple environments. This adaptability suggests a wide range of potential roles in various ecosystems, including soil and plant interactions, where it may contribute to nutrient cycling or even plant health. ↵↵The chain-forming arrangement of B. cereus VD045 may also play a role in its ecological interactions, potentially enhancing its ability to colonize surfaces or compete with other microorganisms in its habitat. Given its aerobic nature, this bacterium may influence the oxygen dynamics within its environment, possibly impacting the microbial community structure. Further studies on its specific ecological roles and interactions are warranted to better understand the contributions of B. cereus VD045 in its natural habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053225 AHET00000000.1 Bac0010285 Bacillus cereus VD102 "Bacillus cereus VD102 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions that may be encountered in various habitats. The ability to grow in multiple habitats indicates a versatile ecological niche, which may include soil, water, and plant surfaces, allowing it to exploit different nutrient sources.↵↵As an aerobic bacterium, Bacillus cereus VD102 requires oxygen for its metabolic processes, which could influence its distribution and interactions within its ecological communities. The formation of chains may provide advantages in terms of nutrient acquisition or protection from environmental stresses. These traits combined suggest that Bacillus cereus VD102 plays a role in its ecosystem, potentially contributing to nutrient cycling and influencing microbial community dynamics. Further investigation into its ecological roles could reveal insights into its interactions with other microorganisms and its environmental significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053228 AHEW00000000.1 Bac0010286 Bacillus cereus VD131 "Bacillus cereus VD131 is a Gram-positive, rod-shaped bacterium that typically forms chains. This microbe thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating that it requires oxygen for growth. B. cereus VD131 is known to inhabit a variety of environments, suggesting a broad ecological adaptability. ↵↵The formation of chains may enhance its survival in diverse habitats by facilitating nutrient uptake and increasing resistance to environmental stressors. The ability to grow in multiple habitats underscores the ecological versatility of this strain, potentially allowing it to occupy niches that other microbes may not exploit. Further research could elucidate the specific ecological roles and interactions of B. cereus VD131 within its environments, contributing to our understanding of microbial community dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053232 AHFA00000000.1 Bac0010287 Bacillus cereus VD136 "Bacillus cereus VD136 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25.0 °C and exhibits aerobic respiration, necessitating the presence of oxygen for its metabolic processes. B. cereus VD136 is found in a variety of habitats, indicating its adaptability and resilience in diverse environments.↵↵The presence of chains in its cellular arrangement may facilitate interactions within microbial communities or contribute to its survival strategies in fluctuating conditions. Its optimal growth temperature suggests that it may be particularly well-suited for environments that do not exceed moderate temperatures, which could include soil and various organic materials. Given its aerobic nature, B. cereus VD136 likely plays a role in the degradation of organic matter, contributing to nutrient cycling in its ecological niches. ↵↵In summary, the combination of its morphological characteristics, growth conditions, and habitat diversity points to B. cereus VD136 as a potentially versatile microbe with implications for both ecological interactions and biogeochemical processes. Understanding the specific roles and interactions of this strain within its environments could provide further insights into its ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053234 AHFC00000000.1 Bac0010288 Bacillus cereus VD156 "Bacillus cereus VD156 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This microorganism exhibits optimal growth at a temperature of 25.0°C, suggesting it is well-adapted to moderate environmental temperatures. The ability of B. cereus VD156 to exist in a variety of habitats indicates its ecological versatility, which may include soils, decaying organic matter, and other environments where nutrients are available.↵↵As a member of the Bacillus genus, this strain is likely to possess characteristics commonly associated with spore formation, although spore-related traits are not specified in the provided data. The aerobic nature of B. cereus VD156 implies that it requires oxygen for its metabolic processes, which may influence its distribution and ecological interactions in its habitats.↵↵The presence of this bacterium in diverse environments underscores its potential role in nutrient cycling and decomposition processes. Further studies could reveal insights into its metabolic pathways and interactions with other microorganisms, contributing to our understanding of microbial dynamics in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053239 AHFH00000000.1 Bac0010289 Bacillus cereus VD169 "Bacillus cereus VD169 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic metabolism. This species thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. B. cereus strains, including VD169, are known to inhabit a variety of habitats, suggesting a broad ecological adaptability. ↵↵The ability to form chains may confer advantages in certain environments, potentially facilitating colonization and survival in nutrient-rich or fluctuating conditions. As an aerobe, B. cereus VD169 relies on oxygen for its metabolic processes, which could influence its distribution in environments with varying oxygen levels. The combination of its morphological characteristics and metabolic requirements indicates that this microbe may play a significant role in specific ecological niches, particularly in aerobic environments where organic matter decomposition occurs. ↵↵Overall, the traits of Bacillus cereus VD169 exemplify its potential for diverse ecological interactions, highlighting its adaptability to varying habitats and conditions. Further investigations into its specific ecological roles could provide insights into its interactions with other microorganisms and its contributions to nutrient cycling in its environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053241 AHFJ00000000.1 Bac0010290 Bacillus cereus VD196 "Bacillus cereus VD196 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its reliance on oxygen for metabolic processes. B. cereus VD196 is found in multiple habitats, suggesting a versatile ecological presence that may include soil, food, and other environments conducive to its growth.↵↵The ability of B. cereus VD196 to form chains is characteristic of its genus and may play a role in its resilience and adaptability within various habitats. As an aerobic organism, it likely participates in ecological processes that require oxygen, contributing to nutrient cycling in its environments. The optimal growth temperature of 25.0°C positions it within a range suitable for many environmental conditions, further supporting its widespread distribution.↵↵Understanding the physiological traits of B. cereus VD196 can provide insights into its ecological roles, particularly in environments where it may interact with other microbial communities. Its adaptability to diverse habitats underscores the importance of studying such organisms, as they can influence soil fertility and food safety dynamics in their respective ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1053243 AHFL00000000.1 Bac0010291 Bacillus cereus VDM021 "Bacillus cereus VDM021 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This microbe thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen for growth and metabolic processes. ↵↵Bacillus cereus species are known for their versatile habitat preferences, capable of colonizing various environments, which may include soil, water, and plant surfaces. This adaptability allows B. cereus VDM021 to play a role in diverse ecological niches, contributing to nutrient cycling and potentially influencing microbial community dynamics.↵↵The filamentous arrangement in chains can facilitate cooperative behaviors among cells, which may enhance survival in fluctuating environments. This trait may also support the microbe's ability to form biofilms, further increasing its resilience in natural habitats. Understanding the characteristics of Bacillus cereus VDM021 can provide insights into its ecological roles and interactions within microbial communities, particularly in environments where oxygen is readily available." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1085386 AHFU00000000.1 Bac0010292 Aggregatibacter actinomycetemcomitans RhAA1 "Aggregatibacter actinomycetemcomitans RhAA1 is a Gram-negative, rod-shaped bacterium classified as a nonsporulating, facultative anaerobe. This microbe thrives optimally at 37.0°C, which corresponds to the average human body temperature, suggesting a possible adaptation to a host-associated lifestyle. As a chemoheterotroph, Aggregatibacter actinomycetemcomitans RhAA1 derives its energy from organic compounds, which aligns with its habitat within the host gut.↵↵The presence of this bacterium in the gut environment may indicate its role in the complex microbial community that contributes to the host's digestion and metabolism. Its facultative anaerobic nature allows it to survive in both oxygen-rich and oxygen-poor conditions, further enhancing its adaptability within the diverse gut ecosystem. These traits suggest that Aggregatibacter actinomycetemcomitans RhAA1 may play a role in metabolic processes that are essential for the host's health, potentially influencing nutrient absorption and immunity. Understanding the specific interactions of this bacterium within the gut microbiome could provide insights into its contributions to host physiology and overall gut health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 1089447 AHGR00000000.1 Bac0010293 Streptomyces coelicoflavus ZG0656 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces coelicoflavus 29 mesophilic 1120227 AHGS00000000.1 Bac0010294 Pantoea stewartii subsp. stewartii DC283 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea stewartii 660596 AHIE00000000.1 Bac0010295 Candidatus Nitrosarchaeum limnium BG20 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Candidatus Nitrosarchaeum limnium 859192 AHJG00000000.1 Bac0010296 Flavobacterium frigoris PS1 66_52 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium frigoris 229204 AHKF00000000.1 Bac0010297 Saccharomonospora cyanea NA-134 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora cyanea 29 mesophilic spore-forming 882082 AHLY00000000.1 Bac0010298 Leptospira kirschneri serovar Bim str. 1051 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira kirschneri 1049941 AHML00000000.2 Bac0010299 Leptospira santarosai serovar Arenal str. MAVJ 401 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 1049976 AHMU00000000.2 Bac0010300 Leptospira interrogans serovar Bataviae str. L1111 "Leptospira interrogans serovar Bataviae str. L1111 is a Gram-negative, spirillum-shaped bacterium that thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 28.0°C, suggesting a preference for warm, moist habitats typically associated with animal hosts. As a member of the Leptospira genus, it is adapted to life in association with hosts, which may provide insights into its ecological interactions and survival strategies.↵↵The microbe's spiral shape is characteristic of the Leptospira genus, which is known for its motility and unique morphology, allowing it to navigate through viscous environments. This adaptation may facilitate its colonization and persistence within various host organisms. The aerobe nature of L. interrogans serovar Bataviae str. L1111 indicates that it requires oxygen for its metabolic processes, which aligns with its habitat preference, as hosts often provide a microaerophilic environment conducive to such bacteria.↵↵Understanding the specific ecological roles of this strain could enhance knowledge of its interactions with both host organisms and the surrounding environment. Given its habitat association and temperature preference, L. interrogans serovar Bataviae str. L1111 may play a significant role in the dynamics of host-associated microbial communities, potentially influencing nutrient cycling and the health of its hosts. Further research into its ecological impact could contribute to broader insights into the role of spirochetes in host microbiomes." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1049804 AHND00000000.2 Bac0010301 Leptospira interrogans str. UI 12758 "Leptospira interrogans strain UI 12758 is a Gram-negative, spiral-shaped bacterium classified within the genus Leptospira. This strain is an aerobe, indicating its dependence on oxygen for growth and metabolism. The optimal growth temperature for L. interrogans UI 12758 is 28.0°C, reflecting its adaptability to environments that may be cooler than typical mammalian body temperatures. ↵↵This strain is host-associated, which suggests a close relationship with its hosts, potentially indicating a specific ecological niche that may include various mammals. The spiral morphology of this microbe is characteristic of the genus, which is known for its unique corkscrew motility that may facilitate its movement through viscous environments, such as bodily fluids.↵↵Understanding the habitat and growth conditions of L. interrogans UI 12758 can provide insights into its ecological role and interactions within host organisms. Given its aerobe nature, this strain likely plays a role in processes involving oxygen-rich environments, possibly influencing the microbial dynamics in host-associated microbiomes. Further exploration of its interactions with host species may elucidate its contributions to host health or disease processes, thus advancing our knowledge of Leptospira’s ecological significance in various ecosystems." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1049938 AHNR00000000.2 Bac0010302 Leptospira weilii str. UI 13098 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira weilii 1088542 AHNU00000000.2 Bac0010303 Leptospira interrogans serovar Australis str. 200703203 "Leptospira interrogans serovar Australis str. 200703203 is a Gram-negative bacterium characterized by its spirilla shape and aerobic metabolism. This strain thrives optimally at a temperature of 28.0°C, indicating a preference for temperate environments. As a member of the Leptospira genus, it is associated with host environments, which suggests an adaptation to living within specific biological systems, possibly utilizing host-derived nutrients for survival and proliferation.↵↵The aerobic nature of L. interrogans serovar Australis str. 200703203 indicates that it requires oxygen for its metabolic processes, which may influence its habitat preferences and ecological interactions. The presence of this strain in host-associated environments hints at its potential role in the complex microbiomes of various hosts, where it may contribute to the overall microbial diversity and dynamics. ↵↵Understanding the specific ecological niches occupied by this strain could provide insights into its interactions with host organisms and other microbial species. Furthermore, the adaptation to an aerobic lifestyle may also reflect its evolutionary responses to the oxygen-rich environments found within host tissues, highlighting the intricate relationships between host, microbe, and the surrounding ecological context." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1085541 AHNY00000000.2 Bac0010304 Leptospira interrogans serovar Icterohaemorrhagiae str. Verdun HP "Leptospira interrogans serovar Icterohaemorrhagiae strain Verdun HP is a Gram-negative, spiral-shaped bacterium classified within the genus Leptospira. This microbe is an aerobic organism, indicating its requirement for oxygen to sustain metabolic processes. It thrives optimally at a temperature of 28.0°C, suggesting a preference for moderate environmental conditions commonly found in specific host-associated habitats.↵↵As a member of the Leptospira genus, this strain is typically associated with mammalian hosts, which can play a crucial role in its life cycle and transmission dynamics. The bacteria's spiral morphology is characteristic of its motility, allowing it to navigate through various environments, potentially enhancing its survival and interaction with host systems. ↵↵The ecological niche of Leptospira interrogans serovar Icterohaemorrhagiae strain Verdun HP is particularly significant, as it underscores the bacterium's association with hosts that may serve as reservoirs. This relationship may facilitate both the persistence of the bacterium within the environment and its potential transmission to other organisms, including humans. Understanding these associations is vital for elucidating the broader ecological impact of this strain and its role in disease ecology, particularly in regions where host populations interact closely with aquatic or moist environments conducive to the survival of Leptospira species." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1049910 AHNZ00000000.2 Bac0010305 Leptospira santarosai str. 200702252 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 1049977 AHOA00000000.2 Bac0010306 Leptospira santarosai str. ZUN179 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 1049985 AHOQ00000000.2 Bac0010307 Leptospira weilii serovar Topaz str. LT2116 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira weilii 1088540 AHOR00000000.2 Bac0010308 Bartonella koehlerae C-29 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella koehlerae microaerophile 1134510 AHPL00000000.1 Bac0010309 Alishewanella jeotgali KCTC 22429 "Alishewanella jeotgali KCTC 22429 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities, thriving optimally at a temperature of 37.0°C. This organism belongs to the genus Alishewanella, which is characterized by its versatility in oxygen utilization, allowing it to adapt to varying environmental conditions. ↵↵The rod shape of A. jeotgali is typical of many members of the Gammaproteobacteria class, to which it is associated. This structural characteristic may play a role in its motility and colonization abilities, although specific motility traits are not detailed in the provided data. The optimal growth temperature of 37.0°C suggests that A. jeotgali may be well-suited for environments that approximate physiological conditions, potentially indicating a niche associated with warm-blooded hosts or specific ecological habitats where such temperatures are prevalent.↵↵The facultative anaerobic nature of A. jeotgali implies that it can thrive in both oxygen-rich and oxygen-poor environments, a trait that may confer an ecological advantage in fluctuating habitats. This adaptability could enable A. jeotgali to participate in diverse biochemical processes, including those related to organic matter decomposition and nutrient cycling. Thus, Alishewanella jeotgali KCTC 22429 may play a significant role in microbiological communities, particularly in environments where oxygen availability is variable." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alishewanella Alishewanella jeotgali Gram-negative rod facultative aerobe/anaerobe 37 mesophilic 1129374 AHTH00000000.1 Bac0010310 Enterococcus faecium EnGen0003 strain E1590 "Enterococcus faecium EnGen0003 strain E1590 is a Gram-positive coccus that thrives in the specific habitat of fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic conditions. The ability to adapt to varying oxygen levels suggests a versatile metabolic capacity, which may contribute to its survival and proliferation in the unique environment of fermented dairy products.↵↵The presence of E. faecium in fermented mare milk indicates its potential role in the fermentation process, where it may contribute to the flavor and preservation of the product. The strain's adaptation to the lactate-rich environment of fermented dairy is of particular interest, as it may possess unique metabolic pathways that facilitate the breakdown of lactose and other carbohydrates present in mare milk. ↵↵Additionally, the ecology of E. faecium EnGen0003 strain E1590 may highlight its significance in traditional fermentation practices, where it could serve as a beneficial microorganism in the production of health-promoting fermented foods. Understanding the specific traits and adaptive strategies of this strain could provide insights into the broader interactions among microbial communities in fermented environments and their impacts on food quality and safety." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 AHXC00000000.1 Bac0010311 Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 "Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 is a Gram-positive, ovoid-shaped bacterium classified within the Enterococcus genus. This subspecies is characterized as a microaerophile, indicating its requirement for reduced oxygen levels for optimal growth, which typically occurs in environments with lower oxygen concentrations than that found in the atmosphere. ↵↵As a member of the Enterococcus group, E. saccharolyticus subsp. saccharolyticus may participate in various ecological niches, particularly in environments rich in carbohydrates, as suggested by its name. The microaerophilic nature of this organism suggests a potential role in fermentation processes, where it might contribute to the breakdown of sugars under limited oxygen conditions. ↵↵While Enterococcus species are often studied for their roles in human health and disease, the specific ecological functions of E. saccharolyticus subsp. saccharolyticus in its natural habitat remain to be fully understood. Its ability to thrive in microaerophilic environments may allow it to occupy unique ecological niches, such as within the gastrointestinal tracts of certain animals or in specific soil conditions where oxygen gradients are present. This adaptability could provide insights into its potential uses in biotechnology or environmental microbiology, particularly in processes requiring microbial fermentation under controlled oxygen conditions." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus saccharolyticus Gram-positive ovoid microaerophile 1139996 AHYT00000000.1 Bac0010312 Rhizobium sp. PDO1-076 strain PDO-076 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PDO1-076 1125979 AHZC00000000.1 Bac0010313 Limosilactobacillus gastricus PS3 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus gastricus 1144300 AICN00000000.1 Bac0010314 Streptococcus anginosus subsp. whileyi CCUG 39159 "Streptococcus anginosus subsp. whileyi CCUG 39159 is a Gram-positive, nonsporulating coccus that thrives as a facultative anaerobe, demonstrating optimal growth at 37.0°C. This bacterium is a member of the Streptococcus genus, which is well-known for its diverse roles in both human health and disease. S. anginosus subsp. whileyi, like other members of this group, is classified as a chemoheterotroph, relying on organic compounds for energy and carbon.↵↵Typically inhabiting the gut of hosts, this subspecies may play a role in the gut microbiome, contributing to the complex microbial community that aids in digestion and overall gut health. Understanding the specific interactions and functions of S. anginosus subsp. whileyi within the gut environment could illuminate its potential benefits or impacts on host physiology. It is noteworthy that the presence of such microbes can influence metabolic processes and immune system responses, highlighting their ecological significance in maintaining gut homeostasis. Further research may elucidate its specific contributions to host-microbe interactions and the broader implications for human health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 1095729 AICP00000000.1 Bac0010315 Escherichia coli DEC1C "Escherichia coli DEC1C is a Gram-negative, rod-shaped bacterium that typically occurs in singles or pairs. This strain thrives optimally at a temperature of 37.0°C, which is consistent with its association with host environments. E. coli DEC1C is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions, which is advantageous for its survival within various host-associated habitats.↵↵The ability of E. coli DEC1C to adapt to differing oxygen levels suggests a versatile metabolic capacity, enabling it to exploit a range of nutritional resources in its environment. This trait may contribute to its ecological presence in diverse biological systems, particularly within the gastrointestinal tracts of hosts, where it can interact with other microbial communities. ↵↵The combination of its rod shape, cell arrangement, and oxygen requirements underscores the adaptability of E. coli DEC1C to its host-associated habitat, reflecting the general resilience and ecological significance of the Escherichia coli species in microbial ecosystems. Understanding these traits can provide insights into the physiological roles that such bacteria may play in their respective niches and their interactions with host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 868135 AIEX00000000.1 Bac0010316 Escherichia coli DEC1D "Escherichia coli DEC1D is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is characteristic of many members of the Enterobacteriaceae family. E. coli DEC1D is optimally adapted to a temperature of 37.0°C, aligning with the average body temperature of warm-blooded hosts, suggesting a close association with host organisms.↵↵The habitat of E. coli DEC1D is primarily host-associated, pointing to its likely role as a commensal organism within the gastrointestinal tract of mammals. The ability to reside within a host context may confer advantages in terms of nutrient acquisition and survival, while also potentially impacting the host's microbiome dynamics. ↵↵The facultative anaerobic nature of E. coli DEC1D allows it to utilize various metabolic pathways depending on the availability of oxygen, enabling it to occupy diverse niches within the host. This metabolic flexibility may contribute to its persistence and adaptability in complex microbial communities. Understanding the specific ecological roles and interactions of E. coli DEC1D within its host environment can provide insights into its influence on host health and the overall microbial ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 868136 AIEY00000000.1 Bac0010317 Bartonella rattimassiliensis 15908 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella rattimassiliensis 1094556 AILY00000000.1 Bac0010318 Bartonella vinsonii subsp. arupensis OK-94-513 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella vinsonii 1094562 AILZ00000000.1 Bac0010319 Bartonella birtlesii LL-WM9 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella birtlesii microaerophile 1094552 AIMC00000000.1 Bac0010320 Bartonella taylorii 8TBB Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella taylorii 1094560 AIMD00000000.1 Bac0010321 Bartonella elizabethae F9251 = ATCC 49927 strain F9251 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella elizabethae 807 AIMF00000000.1 Bac0010322 Enterococcus villorum ATCC 700913 "Enterococcus villorum ATCC 700913 is a Gram-positive cocci that is classified as a nonsporulating, chemoheterotrophic bacterium. This species is part of the diverse intestinal microflora found in animals, where it contributes to the complex microbial ecosystem. ↵↵As a member of the Enterococcus genus, E. villorum is adapted to thrive in the gastrointestinal tract, utilizing organic compounds as energy sources. Its presence in the intestinal microflora underscores its role in the digestion of nutrients and maintenance of gut health. Enterococcus species are often studied for their ability to survive in various environments, which may include their resilience to challenging conditions found within the host's gut.↵↵The nonsporulating nature of E. villorum signifies that it does not produce spores, which may limit its survival outside of host organisms compared to spore-forming bacteria. However, this trait also suggests a specialization in its ecological niche, where it can effectively colonize and persist within the intestinal environment. ↵↵Understanding the role of Enterococcus villorum ATCC 700913 in the animal gut microbiome may provide insights into the interactions between host and microbiota, particularly how this bacterium contributes to the overall metabolic processes and health of the host organism. Further research into its ecological role could illuminate its potential functions in nutrient cycling and microbial community dynamics within the gastrointestinal tract." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus villorum Positive Cocci No 1 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1158604 AJAN00000000.1 Bac0010323 Enterococcus moraviensis ATCC BAA-383 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus moraviensis aerobic 1158609 AJAS00000000.1 Bac0010324 Enterococcus phoeniculicola ATCC BAA-412 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus phoeniculicola 1158610 AJAT00000000.1 Bac0010325 Enterococcus caccae ATCC BAA-1240 "Enterococcus caccae ATCC BAA-1240 is a Gram-positive, spherical bacterium known for its ability to form spores and thrive at an optimal temperature of 45.0 °C. This microbe exhibits distinct characteristics typical of the Enterococcus genus, including its resilience in various environmental conditions, which is often attributed to its spore-forming capability. The sporulation process enables E. caccae to endure adverse conditions, potentially contributing to its survival in high-temperature environments.↵↵The optimal growth temperature of 45.0 °C suggests that E. caccae is thermophilic, indicating a preference for warmer habitats, which may include certain niches in soil or compost where organic matter decomposition occurs at elevated temperatures. The adaptation to such environments may also facilitate its role in biogeochemical cycles, specifically in the breakdown of complex organic materials.↵↵In summary, Enterococcus caccae ATCC BAA-1240 exemplifies the versatile and resilient nature of Gram-positive, spore-forming bacteria, and its thermophilic nature may provide insights into its ecological contributions in thermally enriched environments. Further studies would be necessary to fully elucidate its role in microbial communities and its potential applications in biotechnology or environmental management." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus caccae Gram-positive sphere non-motile 45 thermophilic spore-forming 1158612 AJAU00000000.1 Bac0010326 Enterococcus gilvus ATCC BAA-350 "Enterococcus gilvus ATCC BAA-350 is a nonsporulating, anaerobic coccus that functions as a chemoheterotroph, primarily residing in the gut of various hosts. This organism is characterized by its spherical shape, which is typical of many members of the Enterococcus genus. As a gut inhabitant, E. gilvus plays a role in the complex microbial community, contributing to the fermentation processes and overall gut health of the host organism. ↵↵The reliance on anaerobic conditions suggests that E. gilvus thrives in environments devoid of oxygen, which is consistent with its habitat within the gastrointestinal tract. Chemoheterotrophic metabolism indicates that this microbe utilizes organic compounds as both a source of carbon and energy, reflecting its adaptability to nutrient-rich environments provided by the host's digestive processes.↵↵Understanding the specific traits of Enterococcus gilvus ATCC BAA-350 enhances knowledge of gut microbiota dynamics and their potential implications for host health. Its role as a commensal organism may influence microbial interactions and contribute to the maintenance of gut homeostasis, illustrating the importance of non-pathogenic Enterococcus species in the broader context of microbiome research." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gilvus Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Host gut Nonsporulating 1158614 AJDQ00000000.1 Bac0010327 Mycobacterium xenopi RIVM700367 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium xenopi 1150591 AJFI00000000.1 Bac0010328 Mycoplasmopsis canis UFG4 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis canis 1131455 AJFU00000000.1 Bac0010329 Lachnoanaerobaculum saburreum F0468 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Lachnoanaerobaculum saburreum 1095750 AJGH00000000.1 Bac0010330 Microbacterium laevaniformans OR221 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium laevaniformans 1160710 AJGR00000000.1 Bac0010331 Treponema sp. JC4 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. JC4 1124982 AJGU00000000.1 Bac0010332 Burkholderia sp. SJ98 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. SJ98 406819 AJHK00000000.2 Bac0010333 Prevotella sp. oral taxon 306 str. F0472 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 306 1095752 AJIN00000000.1 Bac0010334 Streptococcus oralis SK100 "Streptococcus oralis SK100 is a Gram-positive coccus that typically arranges itself in pairs or chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Streptococcus oralis SK100 is host-associated, suggesting that it primarily resides in specific host organisms, where it may play a role in the complex microbiota of the host.↵↵As a member of the Streptococcus genus, S. oralis SK100 is likely to contribute to oral health and may be involved in various interactions within the oral microbiome. Its facultative anaerobic lifestyle allows it to adapt to the fluctuating oxygen levels often found in the oral cavity, where it may coexist with other microbial species. The formation of pairs and chains can facilitate the establishment of biofilms, which are crucial for microbial community dynamics and host colonization.↵↵This strain's adaptation to host-associated environments and its potential involvement in biofilm formation may provide insights into the microbial interactions that underpin oral health and disease. Understanding the specific role of S. oralis SK100 in its ecological niche could enhance our knowledge of microbial community structures and their implications for host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1095740 AJKP00000000.1 Bac0010335 Sulfurovum sp. AR Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. AR 1165841 AJLE00000000.1 Bac0010336 Schinkia azotoformans LMG 9581 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Schinkia Schinkia azotoformans 1131731 AJLR00000000.1 Bac0010337 Neobacillus bataviensis LMG 21833 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Neobacillus Neobacillus bataviensis 1117379 AJLS00000000.1 Bac0010338 Metapseudomonas furukawaii strain KF707 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Metapseudomonas Metapseudomonas furukawaii 1149133 AJMR00000000.1 Bac0010339 Neisseria sicca VK64 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sicca 1095748 AJMT00000000.1 Bac0010340 Haemophilus paraphrohaemolyticus HK411 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus paraphrohaemolyticus 1095743 AJMU00000000.1 Bac0010341 Streptococcus sp. GMD2S Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. GMD2S 1169671 AJRA00000000.1 Bac0010342 Streptococcus sp. GMD4S Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. GMD4S 1169673 AJRE00000000.1 Bac0010343 Bifidobacterium longum subsp. longum 35B "Bifidobacterium longum subsp. longum 35B is a Gram-positive, rod-shaped bacterium that typically forms clusters, pairs, or occurs as single cells. This anaerobic microorganism thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. ↵↵As a member of the genus Bifidobacterium, this subspecies plays a crucial role in the gut microbiota of various hosts, contributing to digestive health and the maintenance of gut homeostasis. Its anaerobic nature suggests that B. longum subsp. longum 35B is adapted to environments lacking oxygen, such as the intestines, where it can engage in metabolic processes that are essential for its survival and functionality.↵↵The presence of this strain in the gut microbiome may influence the microbial community structure and promote beneficial interactions with other gut microorganisms. This interplay could contribute to the overall health of the host by potentially enhancing metabolic functions and immune responses. Understanding the specific characteristics of Bifidobacterium longum subsp. longum 35B can provide insights into its ecological roles within the complex gut ecosystem, highlighting its importance in maintaining microbial balance and host health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1161904 AJTI00000000.1 Bac0010344 Rhizobium leguminosarum bv. trifolii WSM2012 "Rhizobium leguminosarum bv. trifolii WSM2012 is a Gram-negative, non-sporulating rod-shaped bacterium that exists primarily as a chemoheterotroph in soil environments. This microbe typically appears as single cells rather than in clusters or chains, which is characteristic of its cell arrangement. As an aerobic organism, R. leguminosarum bv. trifolii WSM2012 requires oxygen for its metabolic processes, which is consistent with its habitat in well-aerated soils where it plays a vital role in nutrient cycling.↵↵This strain is part of a broader group of rhizobia known for their ability to form symbiotic relationships with leguminous plants, facilitating nitrogen fixation. Although specific details about the strain's interactions or ecological roles are not provided, its existence in soil suggests it contributes to soil fertility and plant health, particularly in legume cultivation. The unique adaptation of R. leguminosarum bv. trifolii WSM2012 to aerobic conditions further underscores its importance in terrestrial ecosystems, as it may influence the microbial community dynamics and nutrient availability in its native habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 754522 AJUJ00000000.1 Bac0010345 Herbaspirillum sp. GW103 235_6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum sp. GW103 1175306 AJVC00000000.1 Bac0010346 Rhizobium sp. CF142 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. CF142 1144314 AJWE00000000.1 Bac0010347 Enterovibrio norvegicus FF-454 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Enterovibrio Enterovibrio norvegicus 1185651 AJWN00000000.2 Bac0010348 Acinetobacter sp. HA Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. HA 1173062 AJXD00000000.1 Bac0010349 Rhodanobacter spathiphylli B39 "Rhodanobacter spathiphylli B39 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 37.0 °C. This microbe is characterized by its non-spore-forming nature, which indicates a reliance on vegetative growth for survival and reproduction. The optimal temperature suggests that R. spathiphylli B39 is well-adapted to environments that mimic warm, aerobic habitats, potentially including soil or plant-associated niches.↵↵The Gram-negative cell wall structure of R. spathiphylli B39, which consists of a thin peptidoglycan layer surrounded by an outer membrane, may confer advantages in certain environments by providing resilience against various antimicrobial agents. The rod shape of the bacterium may facilitate motility and nutrient acquisition in its preferred habitats.↵↵Understanding the traits of R. spathiphylli B39 could offer insights into its potential roles in nutrient cycling or interactions with plant systems, particularly given its association with the genus name ""spathiphylli,"" which suggests a link to plant life. This bacterium may contribute to the rhizosphere's microbial diversity, playing a role in promoting plant health through various biochemical processes. Further exploration of its interactions within its ecological niche may reveal additional functions that underscore its importance in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter spathiphylli Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 1163407 AJXT00000000.1 Bac0010350 Rhodanobacter fulvus Jip2 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter fulvus aerobic 1163408 AJXU00000000.1 Bac0010351 Nitratireductor aquibiodomus RA22 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor aquibiodomus 1189611 AJXZ00000000.1 Bac0010352 Rhodococcus opacus M213 "Rhodococcus opacus M213 is a Gram-positive bacterium characterized by its cocci shape and filamentous cell arrangement. As an aerobic organism, R. opacus M213 requires the presence of oxygen for its metabolic processes. This strain has garnered interest within microbiological research due to its potential roles in bioremediation and biodegradation, particularly in environments contaminated with hydrocarbons.↵↵The filamentous arrangement of R. opacus M213 may enhance its ability to interact with various substrates, potentially increasing its efficiency in degrading complex organic compounds. This morphological trait is significant as it may facilitate nutrient acquisition and biofilm formation, allowing for more effective colonization of contaminated sites.↵↵In addition to its structural attributes, the aerobic nature of R. opacus M213 suggests that it could thrive in oxygen-rich environments, which is a common characteristic of many soil-dwelling bacteria. This trait may also imply an ability to utilize a diverse range of organic compounds as carbon sources, further supporting its role in nutrient cycling.↵↵The ecological implications of R. opacus M213 are noteworthy, as its filamentous growth and aerobic metabolism position it as a potential key player in the degradation of environmental pollutants. Understanding the capabilities of this strain could lead to advancements in bioremediation strategies, particularly in addressing the challenges posed by hydrocarbon pollution in terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 1129896 AJYC00000000.2 Bac0010353 Vibrio rumoiensis 1S-45 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio rumoiensis 1188252 AJYK00000000.2 Bac0010354 Vibrio genomosp. F10 str. ZF-129 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio genomosp. F10 1187848 AJYQ00000000.2 Bac0010355 Vibrio anguillarum strain 12B09 "Vibrio anguillarum strain 12B09 is a Gram-negative, curved-shaped bacterium that exists primarily in a single-cell arrangement and is characterized as nonsporulating. As a facultative heterotroph, it can utilize a variety of organic compounds for energy, allowing it to thrive in diverse environments where organic matter is present. This strain is notably host-associated, indicating a potential relationship with specific hosts, which may influence its ecological interactions and survival strategies.↵↵The curved morphology of V. anguillarum strain 12B09 is typical of the Vibrio genus, which is known for its distinctive rod-like shape, often exhibiting a comma or spiral form. The facultative nature of its oxygen requirement suggests that this strain can adapt to varying oxygen levels, enabling it to inhabit environments ranging from oxygen-rich surface waters to anoxic conditions found in deeper substrates associated with its hosts.↵↵The ecological implications of V. anguillarum strain 12B09's heterotrophic lifestyle and host association may suggest a role in nutrient cycling within its habitat, as it could contribute to the breakdown of organic materials and facilitate the transfer of energy through the food web. Further research into its specific interactions with host organisms and the surrounding environment could yield insights into its functional role within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 AJYV00000000.2 Bac0010356 Vibrio kanaloae 5S-149 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio kanaloae 1191299 AJYX00000000.3 Bac0010357 Vibrio splendidus 12E03 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus 1191305 AJZD00000000.2 Bac0010358 Vibrio splendidus ZS-139 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus 617140 AJZE00000000.2 Bac0010359 Vibrio tasmaniensis 1F-187 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tasmaniensis 1191322 AJZM00000000.3 Bac0010360 Capnocytophaga sp. oral taxon 412 str. F0487 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 412 1125721 AJZR00000000.1 Bac0010361 Lactiplantibacillus pentosus KCA1 "Lactiplantibacillus pentosus KCA1 is a nonsporulating, Gram-positive rod-shaped bacterium that exhibits facultative anaerobic metabolism, utilizing a chemoheterotrophic lifestyle. This microbe thrives optimally at a temperature of 30.0°C and is capable of adapting to various habitats, suggesting a versatile ecological niche. The ability to function under both aerobic and anaerobic conditions allows L. pentosus KCA1 to exploit a range of organic substrates, contributing to its survival in diverse environments.↵↵The facultative anaerobic nature of L. pentosus KCA1 suggests potential roles in fermentation processes, particularly in food and beverage production, where its metabolic flexibility can enhance the development of flavor and texture. Its presence in multiple habitats may indicate a significant role in microbial communities, potentially influencing the dynamics of microbial interactions and nutrient cycling. Further investigation into the specific habitats where L. pentosus KCA1 is found could provide valuable insights into its ecological contributions and applications in biotechnology. Overall, the adaptability and metabolic capabilities of L. pentosus KCA1 underscore its potential importance in both natural ecosystems and industrial processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus pentosus Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1136177 AKAO00000000.1 Bac0010362 Escherichia coli O111:H11 str. CVM9455 ECO9455_99 "Escherichia coli O111:H11 str. CVM9455 (ECO9455_99) is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is part of the diverse E. coli species, which are primarily found in host-associated environments. It exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic conditions. The optimal growth temperature for this strain is 37°C, aligning with the physiological temperature of its mammalian hosts.↵↵As a member of the Enterobacteriaceae family, E. coli O111:H11 str. CVM9455 is likely adapted to the intestinal milieu of warm-blooded animals, where it can exploit various nutrient sources available in the gut. The ability to grow in the presence or absence of oxygen suggests a versatile metabolic capability, which may facilitate its survival in fluctuating environmental conditions within the host. Such adaptability is a common trait among enteric bacteria, enabling them to colonize and persist in the complex gastrointestinal ecosystem.↵↵Furthermore, the specific strain designation, O111:H11, indicates the presence of particular surface antigens, which could play a role in its interactions within the host environment, although details regarding its pathogenic potential or specific ecological roles require further investigation. Overall, E. coli O111:H11 str. CVM9455 exemplifies the adaptability and ecological specialization of enteric bacteria within host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 AKAX00000000.1 Bac0010363 Methylobacterium sp. GXF4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. GXF4 1096546 AKFK00000000.1 Bac0010364 Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 "Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 is a rod-shaped bacterium recognized for its distinct morphological characteristics. This strain is classified within the genus Loigolactobacillus, which is notable for its fermentation capabilities. The rod shape of L. coryniformis subsp. coryniformis is a common feature among lactic acid bacteria, contributing to its classification and potential applications in food microbiology and fermentation processes.↵↵The strain is characterized by its ability to thrive in various environments, although specific ecological niches or interactions have not been detailed. Lactic acid bacteria, including this subspecies, are often utilized in the production of fermented foods and beverages due to their role in lactic acid fermentation, which can enhance flavor and preserve food products.↵↵Furthermore, L. coryniformis subsp. coryniformis exhibits traits that may be indicative of its metabolic pathways, although specific metabolic capabilities have not been detailed in the provided information. This strain's ability to ferment sugars into lactic acid positions it as a potential candidate for applications in probiotic formulations and functional foods, where it might contribute positively to gut health.↵↵Ultimately, the presence of rod-shaped bacteria like L. coryniformis subsp. coryniformis in various fermentation processes underscores the ecological importance of lactic acid bacteria in both natural and industrial contexts, highlighting their role in nutrient cycling and food preservation." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus coryniformis Rod 1185325 AKFP00000000.1 Bac0010365 Schaalia georgiae F0490 "Schaalia georgiae F0490 is a Gram-positive, nonsporulating bacterium classified as a chemoheterotroph, primarily residing in the gut of its host. This microbe utilizes organic compounds as its energy source, which reflects its adaptation to the nutrient-rich environment of the gastrointestinal tract. The absence of sporulation indicates that Schaalia georgiae F0490 relies on other survival strategies in response to environmental fluctuations, rather than forming spores for resilience.↵↵The gut habitat suggests that this bacterium may play a role in the complex microbial community associated with digestion and nutrient absorption, potentially contributing to the host's overall health. As a member of the gut microbiota, Schaalia georgiae F0490 may participate in various metabolic processes, including the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for gut health. ↵↵Furthermore, the specific adaptations of Schaalia georgiae F0490 to its intestinal environment may provide insights into the intricate relationships between gut microbiota and host physiology, highlighting the importance of this microbe in maintaining a balanced gut ecosystem." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia georgiae Positive No 1 Chemoheterotroph Host gut Nonsporulating 1125717 AKFS00000000.1 Bac0010366 Clostridium sp. MSTE9 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. MSTE9 1105031 AKFU00000000.1 Bac0010367 Weissella koreensis KCTC 3621 11.JC2156.3_9 "Weissella koreensis KCTC 3621 11.JC2156.3_9 is a nonsporulating rod-shaped bacterium primarily associated with the fermentation of kimchi. This microbe is part of a diverse group of lactic acid bacteria known for their role in food fermentation, contributing to the unique flavor and preservation of this traditional Korean dish. ↵↵As a member of the Weissella genus, W. koreensis is expected to exhibit characteristics typical of lactic acid bacteria, including the production of lactic acid as a metabolic byproduct during carbohydrate fermentation. The nonsporulating nature of this strain indicates that it does not form spores, suggesting a reliance on its immediate environment for survival and propagation.↵↵The habitat of W. koreensis in kimchi highlights its potential in food microbiology, particularly in the context of spontaneous fermentation processes. This association suggests that the strain may play a significant role in the development of the organoleptic properties of kimchi, influencing taste, aroma, and texture. The presence of W. koreensis in such a complex microbial ecosystem may also contribute to the stability of the fermentation process, thereby affecting the overall quality and safety of the final product.↵↵Understanding the traits of Weissella koreensis KCTC 3621 11.JC2156.3_9 may provide insights into its functional roles in fermented foods and its potential applications in the development of probiotics or biopreservation strategies, underscoring the significance of microbial diversity in traditional food systems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella koreensis Rod No kimchi Free living Nonsporulating 165096 AKGG00000000.1 Bac0010368 Helicobacter pylori FD703 "Helicobacter pylori FD703 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which coincides with the body temperature of its natural hosts, suggesting a close association with warm-blooded organisms. H. pylori FD703 is primarily found in host-associated habitats, indicating that it resides in specific environments within its hosts, potentially influencing the microbiome and local physiological conditions.↵↵The microaerophilic nature of H. pylori FD703 implies that it requires reduced levels of oxygen for growth, which is consistent with its adaptation to the gastric environment where oxygen concentrations are lower than atmospheric levels. Its spiral morphology may contribute to its motility within viscous environments, allowing it to navigate the gastric mucus layer effectively.↵↵The ecological role of H. pylori FD703 within its host may extend beyond mere colonization, as it might engage in complex interactions with the host’s immune system and other microbial communities. Understanding the specific adaptations and behaviors of this strain can shed light on its ecological niche and the potential implications for host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191285 AKHS00000000.2 Bac0010369 Helicobacter pylori GC26 "Helicobacter pylori GC26 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single cell arrangement. This organism thrives optimally at 37.0°C, which aligns with the physiological temperature of its host environment. As a host-associated microbe, H. pylori GC26 is typically found residing in the gastric mucosa of mammals, where it can establish a niche that allows for adaptation to the unique conditions of the stomach.↵↵The microaerophilic nature of H. pylori GC26 suggests that it requires reduced levels of oxygen for optimal growth, a trait that is advantageous in the low-oxygen environment of the gastric epithelium. Its spiral morphology may facilitate motility through the viscous gastric mucus, potentially aiding in colonization and persistence within the host's gastrointestinal tract.↵↵The specific ecological role of H. pylori GC26 within its host is not fully elucidated; however, the bacterium's adaptation to a microaerophilic habitat and its ability to maintain its viability at physiological temperatures indicate a highly specialized lifestyle. This adaptation may provide insights into the broader interactions between host-associated bacteria and their environments, particularly regarding how such microbes can influence local pH and nutrient availability within the gastric niche. Further studies are warranted to explore these interactions and the potential implications for host health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1191287 AKHV00000000.2 Bac0010370 Pontibacter sp. BAB1700 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter sp. BAB1700 1144253 AKIS00000000.1 Bac0010371 Pantoea sp. YR343 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. YR343 1144341 AKIT00000000.2 Bac0010372 Variovorax sp. CF313 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. CF313 1144315 AKIW00000000.1 Bac0010373 Brevibacillus sp. BC25 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus sp. BC25 1144308 AKIX00000000.1 Bac0010374 Bradyrhizobium sp. YR681 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. YR681 1144344 AKIY00000000.1 Bac0010375 Herbaspirillum sp. YR522 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum sp. YR522 1144342 AKJA00000000.1 Bac0010376 Pseudomonas sp. GM102 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM102 1144321 AKJB00000000.1 Bac0010377 Pseudomonas sp. GM80 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM80 1144339 AKJD00000000.1 Bac0010378 Pseudomonas sp. GM79 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM79 1144338 AKJE00000000.1 Bac0010379 Pseudomonas sp. GM60 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM60 1144334 AKJI00000000.1 Bac0010380 Pseudomonas sp. GM30 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM30 1144328 AKJP00000000.2 Bac0010381 Pseudomonas sp. GM25 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM25 1144327 AKJQ00000000.1 Bac0010382 Pseudomonas sp. GM21 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM21 1144325 AKJS00000000.1 Bac0010383 Pseudomonas sp. GM16 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GM16 1144322 AKJV00000000.1 Bac0010384 Acidovorax sp. CF316 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. CF316 1144317 AKJX00000000.1 Bac0010385 Brevibacillus sp. CF112 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus sp. CF112 1144311 AKKB00000000.1 Bac0010386 Rhizobium sp. CF080 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. CF080 1144310 AKKC00000000.2 Bac0010387 Novosphingobium sp. AP12 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. AP12 1144305 AKKE00000000.1 Bac0010388 Caulobacter sp. AP07 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. AP07 1144304 AKKF00000000.1 Bac0010389 Providencia burhodogranariea DSM 19968 "Providencia burhodogranariea DSM 19968 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism. This species, belonging to the Providencia genus, exhibits typical traits associated with aerobic microorganisms, requiring oxygen for growth and energy production. The rod shape of P. burhodogranariea is consistent with many members of the Enterobacteriaceae family, to which it is related. ↵↵As a Gram-negative bacterium, P. burhodogranariea possesses a thin peptidoglycan layer sandwiched between an inner cytoplasmic membrane and an outer membrane containing lipopolysaccharides, contributing to its structural integrity and influencing its interactions with the environment. This structural characteristic is important for understanding the physiological responses of the microbe under various conditions.↵↵While specific metabolic pathways and biochemical activities remain to be elucidated, the aerobic nature of P. burhodogranariea suggests that it may play a role in biogeochemical cycles, particularly in environments where oxygen is available. Its potential utility in bioremediation or nutrient cycling in oxygen-rich habitats could be an area for further research, shedding light on its ecological significance in microbial communities. The study of aerobic Gram-negative bacteria like P. burhodogranariea can enhance our understanding of microbial diversity and function in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia burhodogranariea Gram-negative rod aerobic 1141662 AKKL00000000.1 Bac0010390 Thiovulum sp. ES Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Thiovulum Thiovulum sp. ES 1177931 AKKQ00000000.1 Bac0010391 Fictibacillus macauensis ZFHKF-1 Bacillati Bacillota Bacilli Caryophanales Fictibacillaceae Fictibacillus Fictibacillus macauensis 1196324 AKKV00000000.1 Bac0010392 Shigella flexneri K-315 "Shigella flexneri K-315 is a nonsporulating, Gram-negative rod-shaped bacterium that typically exists in pairs or single arrangements. This microbe is classified as a facultative anaerobe, which allows it to thrive in varying oxygen conditions, and it primarily relies on organic compounds as a chemoorganotroph for its energy source. The optimal growth temperature for S. flexneri K-315 is 37.0 °C, aligning with the typical body temperature of its host organisms, which suggests a close adaptation to a host-associated habitat.↵↵As a member of the genus Shigella, S. flexneri K-315 is known to inhabit the intestines of its hosts, where it may play a role in specific ecological interactions. The observation that this strain is nonsporulating limits its environmental resilience compared to spore-forming bacteria, indicating a reliance on host environments for survival and propagation. The facultative nature of S. flexneri K-315 allows it to switch between aerobic respiration and fermentation, facilitating its survival in diverse intestinal environments where oxygen levels can fluctuate.↵↵The ecological insight that emerges from the traits of S. flexneri K-315 is its potential role in the dynamics of gut microbiomes, where its presence may influence microbial community structure and function, especially in relation to host health and disease. This adaptability to host-associated environments underscores the importance of S. flexneri K-315 in microbiological studies focused on host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 766150 AKMY00000000.1 Bac0010393 Helicobacter pylori CPY1124 "Helicobacter pylori CPY1124 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in a host-associated habitat, indicating a specialized adaptation to living within the gastrointestinal tract of mammals. Optimal growth is observed at 37.0°C, reflecting its adaptation to the warm internal environment of its host. As a microaerophilic organism, H. pylori CPY1124 requires reduced levels of oxygen for growth, which aligns with the low-oxygen conditions typically found in the gastric environment.↵↵The microbe's unique morphology, combined with its specific habitat requirements and oxygen dependence, suggests a finely tuned evolutionary adaptation to life in the host's stomach. This adaptation may provide insights into the complex interactions between H. pylori CPY1124 and the host's immune system, as well as its potential role in influencing gastric microbiota composition. Further investigation into these interactions could enhance our understanding of the ecological niche occupied by this strain and its implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992013 AKNJ00000000.1 Bac0010394 Helicobacter pylori CPY6271 "Helicobacter pylori CPY6271 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and presence as single cells. This organism is optimally adapted to grow at a temperature of 37.0°C, which aligns with its habitat within host-associated environments, commonly found in the gastric mucosa of mammals. ↵↵The microaerophilic nature of H. pylori CPY6271 indicates that it requires reduced levels of oxygen for growth, allowing it to thrive in the oxygen-limited conditions of the stomach. Its spiral morphology may facilitate motility through the viscous gastric mucus, which is crucial for colonization and persistence in its host.↵↵Given its specific habitat and oxygen requirements, H. pylori CPY6271 exemplifies the adaptability of certain bacteria to thrive in niche environments within the human body, where they may influence local microbial communities and host physiology. The unique ecological role of H. pylori as a resident microbe highlights the complex interactions between host and microorganism in the gastrointestinal tract, potentially impacting digestive health and the overall microbial balance." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992020 AKNP00000000.1 Bac0010395 Helicobacter pylori NQ4200 "Helicobacter pylori NQ4200 is a Gram-negative, spiral-shaped bacterium characterized by its microaerophilic oxygen requirement and host-associated habitat. This organism typically exists as single cells rather than in clusters or chains, which is consistent with its lifestyle and ecological niche. The optimal growth temperature for H. pylori NQ4200 is 37.0°C, aligning with the physiological conditions found in the human stomach, where it is commonly located.↵↵The microaerophilic nature of H. pylori NQ4200 indicates that it thrives in environments with lower levels of oxygen than are found in the atmosphere, suggesting a specialized adaptation to the gastric environment that may influence its survival and metabolism. This trait may also play a role in its interactions with the host and the surrounding microbial community. ↵↵Understanding the physiological traits of H. pylori NQ4200 can provide insights into its ecological role in the human microbiome, particularly in relation to its potential influence on gastric health and disease. The adaptation to a microaerophilic lifestyle may facilitate its persistence in the hostile gastric environment, providing a unique perspective on the evolutionary pressures faced by this bacterium in maintaining its niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992024 AKNS00000000.1 Bac0010396 Helicobacter pylori NQ4161 "Helicobacter pylori NQ4161 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. H. pylori is known to inhabit the gastric mucosa of humans, where it can interact with the host's immune system and gastric environment.↵↵As a microaerophilic organism, H. pylori requires reduced levels of oxygen for growth, which is consistent with its colonization of the anaerobic environment found within the stomach. The unique shape of H. pylori, combined with its motility, allows it to navigate through the viscous mucus layer of the gastric epithelium, facilitating its survival and establishment in a nutrient-restricted niche.↵↵The ability of H. pylori to persist in the harsh gastric environment and its specific growth requirements highlight its specialized adaptation to host-associated habitats. This specialization may play a role in its potential interactions with the host microbiome, influencing gastric health and disease outcomes. Understanding these traits provides insight into the ecological dynamics of H. pylori within the human stomach and its potential impact on gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992030 AKNY00000000.1 Bac0010397 Helicobacter pylori NQ4110 "Helicobacter pylori NQ4110 is a Gram-negative bacterium characterized by its spirilla shape and typically found as single cells. This microbe thrives optimally at a temperature of 37.0°C, indicating its adaptation to the warm environment of the host. H. pylori NQ4110 is microaerophilic, requiring reduced oxygen levels for growth, which aligns with its habitat as a host-associated organism, often residing in the gastric mucosa of mammals. ↵↵The unique morphology and specific environmental requirements of H. pylori NQ4110 may contribute to its survival and colonization in the acidic conditions of the stomach. Understanding these traits provides insights into the microbe's potential interactions within its host environment, highlighting its specialized adaptations to thrive in a niche that presents both nutrient availability and harsh physiological conditions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992031 AKNZ00000000.1 Bac0010398 Helicobacter pylori Hp A-9 "Helicobacter pylori Hp A-9 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is notably microaerophilic, thriving in environments with reduced oxygen levels, which aligns with its habitat as a host-associated organism. The optimal growth temperature for H. pylori Hp A-9 is approximately 37.0°C, reflecting its adaptation to the warm conditions typically found in the gastrointestinal tracts of various hosts, including humans.↵↵H. pylori is known for its unique ability to colonize the gastric mucosa, and its morphology, particularly the helical structure, is thought to facilitate motility in viscous environments such as mucus. The microaerophilic nature of H. pylori Hp A-9 suggests that it may have evolved specific metabolic pathways to survive in low-oxygen niches, potentially influencing its interactions with the host's immune system and other microbial inhabitants of the gastrointestinal ecosystem.↵↵Understanding the specific traits and adaptations of H. pylori Hp A-9 can provide insight into its role in the complex microbiome of the stomach, where it may engage in intricate relationships with both the host and other microbial species. This highlights the importance of studying strain-specific characteristics to unravel the ecological dynamics within the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992034 AKOC00000000.1 Bac0010399 Helicobacter pylori Hp H-24 "Helicobacter pylori Hp H-24 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the average human body temperature, indicating its adaptation to a host-associated habitat. ↵↵H. pylori is primarily found in the gastric mucosa of humans and is known for its unique ability to survive in the acidic environment of the stomach, which presents a significant challenge for many other microorganisms. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its habitat within the stomach, where oxygen levels are lower than in the atmosphere. ↵↵The spiral shape of H. pylori may facilitate its motility through the viscous gastric mucus, allowing it to colonize the gastric lining effectively. The combination of these traits suggests that H. pylori has evolved mechanisms to thrive in a niche that is hostile to many other microbial species. This adaptability not only highlights the ecological significance of H. pylori in the human gastrointestinal microbiome but also raises questions about its role in the broader context of host-microbe interactions and potential impacts on gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992039 AKOG00000000.1 Bac0010400 Helicobacter pylori Hp H-28 "Helicobacter pylori Hp H-28 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and occurrence as single cells. This strain thrives optimally at 37.0°C, indicating a preference for the body temperature of its host. As a member of the Helicobacter genus, H. pylori is typically found in host-associated habitats, where it can colonize the gastric epithelium of mammals, including humans.↵↵The microaerophilic nature of H. pylori suggests that it requires low levels of oxygen for growth, which aligns with its adaptation to the stomach's unique environment. The bacterium's spiral morphology may enhance its motility within the viscous gastric mucus, facilitating its colonization and persistence in the acidic conditions of the stomach. This adaptation is critical for its survival and potential interaction with the host's immune system.↵↵In addition to its morphological and physiological traits, understanding the ecological niche of Helicobacter pylori Hp H-28 can provide insights into its role in the gastric microbiome. This strain may influence the overall microbial diversity within the host's stomach, highlighting the importance of host-associated microbiota in health and disease. Further exploration of its interactions with both the host and other microbial residents could deepen our understanding of its ecological significance and potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992041 AKOI00000000.1 Bac0010401 Helicobacter pylori Hp H-29 "Helicobacter pylori strain Hp H-29 is a Gram-negative bacterium characterized by its distinctive spirilla shape and occurrence as single cells. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions of its host environment. H. pylori is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth, a trait that is crucial for its survival within the gastric mucosa of the host.↵↵As a host-associated organism, H. pylori is primarily found in the stomachs of various hosts, where it can establish a niche that supports its metabolic needs. The adaptation to a microaerophilic habitat suggests that H. pylori may have evolved specific mechanisms to cope with the low oxygen tension typically present in the gastric environment, which could include specialized respiratory pathways or protective strategies against oxidative stress.↵↵The unique combination of its morphological characteristics, growth requirements, and habitat underscores the bacterium's role in the complex microbial ecosystem of the gastrointestinal tract. Understanding these traits provides insight into the ecological dynamics within the stomach and highlights the potential interactions between H. pylori and the host's immune responses, as well as its implications for gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992042 AKOJ00000000.1 Bac0010402 Helicobacter pylori Hp H-43 "Helicobacter pylori strain Hp H-43 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is microaerophilic, thriving in environments with reduced oxygen levels, which aligns with its habitat preference as a host-associated organism. The optimal growth temperature for H. pylori Hp H-43 is approximately 37.0°C, reflecting its adaptation to the warm conditions of the mammalian stomach, where it is typically found.↵↵Due to its unique morphological and physiological characteristics, H. pylori Hp H-43 is well-adapted to survive and proliferate in the gastric niche. The microaerophilic nature of this strain suggests a reliance on specific atmospheric conditions, which may influence its distribution within host tissues and its interactions with the host's immune system. Understanding these traits is essential for elucidating the roles of H. pylori in its niche, particularly in relation to its survival strategies in the acidic gastric environment. The microbe's adaptation to host-associated habitats underscores its potential impact on the microbiome composition and gastric health, highlighting the intricate relationships between host and pathogen in the context of microbial ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992048 AKOO00000000.1 Bac0010403 Helicobacter pylori Hp H-44 "Helicobacter pylori Hp H-44 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This organism is typically associated with host environments, thriving optimally at a temperature of 37.0°C, which aligns with the human body temperature, suggesting its adaptation to a specific biological niche. ↵↵H. pylori is known for its ability to colonize the gastric mucosa of the stomach, where it may play a role in various gastrointestinal conditions. The microaerophilic nature of H. pylori indicates that it requires low levels of oxygen for growth, which is consistent with its gastric habitat, where oxygen levels are reduced compared to atmospheric conditions. ↵↵The combination of its unique morphology, temperature preference, and oxygen requirement highlights its specialization for survival in the human stomach, an environment that presents both challenges and opportunities for microbial colonization. Understanding the traits of H. pylori Hp H-44 can provide valuable insights into its ecological role within the human microbiome and its potential interactions with host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992049 AKOP00000000.1 Bac0010404 Helicobacter pylori Hp H-45 "Helicobacter pylori Hp H-45 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and singular cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of the human host, indicating its adaptation to a host-associated habitat. ↵↵H. pylori is primarily found in the gastric mucosa of humans, where it can establish a persistent colonization. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which aligns with its niche in the stomach, where oxygen concentration is lower than in the atmosphere. The unique morphology of this spirilla bacterium allows it to navigate through the viscous environment of the gastric mucus, potentially facilitating its survival and persistence in the acidic gastric milieu.↵↵Given its specific temperature preference and habitat association, H. pylori Hp H-45 may play a significant role in the complex interactions within the gastric ecosystem, influencing both microbial diversity and host physiological responses. Understanding its traits can provide insights into its ecological niche and the potential implications for gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992050 AKOQ00000000.1 Bac0010405 Helicobacter pylori Hp A-8 "Helicobacter pylori strain Hp A-8 is a Gram-negative, spirilla-shaped bacterium that typically occurs as single cells. This microbe thrives optimally at a temperature of 37.0°C, indicating its adaptation to the human body, where it is primarily found in a host-associated habitat. Helicobacter pylori is classified as microaerophilic, necessitating reduced levels of oxygen for growth, which aligns with its ecological niche within the gastric environment.↵↵The unique morphology of Hp A-8, characterized by its spiral shape, may facilitate its movement through the viscous mucus layer of the stomach lining, allowing it to colonize the gastric epithelium effectively. This adaptation could play a crucial role in its survival and persistence in the acidic environment of the stomach. Given its optimal growth temperature, it is likely that Hp A-8 has evolved specific mechanisms to withstand the challenges posed by the human gastric milieu.↵↵In summary, the combination of its Gram-negative cell structure, microaerophilic nature, and optimal growth temperature suggests that Helicobacter pylori strain Hp A-8 is highly specialized for life within the human stomach, potentially influencing both its ecological interactions and its role in the host's health and disease processes. This specialization underscores the importance of studying such microbes within their specific environments to understand their biological functions and implications for human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992053 AKOS00000000.1 Bac0010406 Helicobacter pylori Hp A-16 "Helicobacter pylori strain Hp A-16 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its primary habitat, the human stomach. As a microaerophilic organism, H. pylori Hp A-16 requires reduced levels of oxygen for growth, reflecting its adaptation to the gastric environment where oxygen levels are limited.↵↵H. pylori is notably associated with the host, residing in the gastric mucosa, and it plays a significant role in the complex interactions between the microbiota and the host's gastrointestinal system. The unique combination of its morphological traits and specific oxygen requirements underscores its evolutionary adaptations to survive in the harsh acidic environment of the stomach. ↵↵An intriguing aspect of H. pylori Hp A-16’s biology is its potential role in shaping the gastric microbiome, which may influence not only digestive health but also broader systemic effects on the host. Understanding the specific traits of this strain can contribute to insights into the dynamics of host-associated microbial communities and their implications for human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992055 AKOU00000000.1 Bac0010407 Helicobacter pylori Hp A-27 "Helicobacter pylori strain Hp A-27 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the typical body temperature of its human hosts. As a microaerophilic organism, H. pylori Hp A-27 requires reduced levels of oxygen for growth, indicating its adaptation to the specific environmental conditions found in the human stomach, where it resides as a host-associated organism.↵↵The spirilla morphology of H. pylori Hp A-27 is significant, as it contributes to the bacterium's motility, enabling it to navigate the viscous gastric environment. The microbe's capability to survive in the acidic conditions of the stomach is facilitated by its unique enzymatic systems, although specific mechanisms for this strain have not been delineated here. ↵↵Overall, the ecological niche of H. pylori Hp A-27 reflects its specialized adaptation to a microaerobic and acidic environment, highlighting the complex interactions that exist between host physiology and microbial life in the gastrointestinal tract. This relationship underscores the potential for further investigation into how specific strains like Hp A-27 may influence host health and disease states through their metabolic activities and environmental adaptations." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992057 AKOW00000000.1 Bac0010408 Helicobacter pylori Hp H-6 "Helicobacter pylori strain Hp H-6 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and predominantly single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions of its host-associated habitat. ↵↵As a member of the Helicobacter genus, Hp H-6 is adapted to colonize the gastric mucosa of its host, suggesting a specialized niche that may play a significant role in its survival and metabolic processes. The microaerophilic nature of H. pylori indicates that it requires a reduced level of oxygen for growth, which is conducive to the low-oxygen environment typically found in the stomach. ↵↵This unique combination of traits underscores the bacterium's adaptation to its host environment, where it may influence gastric health and disease processes. The ability of H. pylori to persist in such a challenging habitat highlights its potential role in the complex interactions that occur within the gastrointestinal microbiome, suggesting that it may contribute to both microbial diversity and host-microbe interactions in the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992061 AKOZ00000000.1 Bac0010409 Helicobacter pylori Hp H-9 "Helicobacter pylori strain Hp H-9 is a Gram-negative bacterium characterized by its spirilla shape and arrangement as single cells. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological temperature of its host, indicating a strong adaptation to its environment. As a microaerophilic organism, H. pylori requires reduced oxygen levels for growth, suggesting its presence in niches within the host where oxygen concentration is lower than atmospheric levels.↵↵H. pylori is primarily associated with the gastric mucosa of humans and is known for its ability to survive in the harsh acidic environment of the stomach. Its unique spiral morphology may contribute to its motility and colonization capabilities, allowing it to navigate through the viscous gastric mucus layer. The microbe's habitat within the host underscores its potential role in the complex interactions of the gastric microbiome.↵↵The specific adaptation of H. pylori to a microaerophilic environment and its preference for host-associated habitats reflect the intricate evolutionary pressures it has faced. This adaptation not only highlights its resilience in a hostile environment but may also provide insights into the co-evolutionary dynamics between H. pylori and its human host, influencing both microbial ecology and host health. Further research could explore these interactions and their implications for understanding the broader gastric microbiome and its impact on gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992062 AKPA00000000.1 Bac0010410 Helicobacter pylori Hp H-10 "Helicobacter pylori Hp H-10 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape (spirilla) and a solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. ↵↵H. pylori is notably adapted to colonize the gastric mucosa of the stomach, where it can persist in the presence of acidic environments. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for optimal growth, which is consistent with its adaptation to the gastric niche where oxygen levels are lower than in the atmosphere. ↵↵The unique combination of traits exhibited by H. pylori Hp H-10 highlights its specialized role in the gastric ecosystem, where it engages in complex interactions with host cells and the microbiome. Understanding these interactions may provide insights into the broader implications of H. pylori in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992063 AKPB00000000.1 Bac0010411 Helicobacter pylori Hp H-11 "Helicobacter pylori Hp H-11 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape (spirilla) and solitary cell arrangement. This organism exhibits optimal growth at 37°C, aligning with the temperature typically found in the gastric environment of its host. H. pylori is notably associated with the gastric mucosa of various hosts, indicating a specialized habitat that is closely linked to mammalian physiology.↵↵The microaerophilic nature of H. pylori suggests that it thrives in environments with reduced oxygen levels, which is consistent with its adaptation to the human stomach, where oxygen is limited due to the presence of gastric juices. The spiral morphology of H. pylori is believed to play a crucial role in its motility, allowing the bacterium to navigate through the viscous gastric mucus layer and adhere to the epithelial cells of the stomach lining. ↵↵Moreover, the association of H. pylori with its host highlights the potential for complex interactions within the gastric microbiome, where it may influence the overall microbial community structure and function. Understanding the ecological niche of H. pylori Hp H-11 provides insights into its role in host-associated microbial dynamics and the potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992064 AKPC00000000.1 Bac0010412 Helicobacter pylori Hp H-18 "Helicobacter pylori strain Hp H-18 is a Gram-negative bacterium characterized by its spirilla shape and individual cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, indicating a preference for conditions similar to the human body, where it is primarily found in association with its host. H. pylori is classified as microaerophilic, requiring low levels of oxygen for growth, which aligns with its ecological niche in the gastric environment, where oxygen concentration is limited.↵↵The microbe's adaptation to a host-associated habitat suggests a specialized evolutionary strategy that allows it to colonize and survive in the acidic conditions of the stomach. Its unique morphology and oxygen requirements reflect its evolutionary history and ecological interactions within the gastrointestinal tract. Understanding the conditions that support the growth of H. pylori Hp H-18 may provide insights into its role in the complex microbial community of the human gut and its potential implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992065 AKPD00000000.1 Bac0010413 Helicobacter pylori Hp H-19 "Helicobacter pylori Hp H-19 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, indicating its adaptation to the warm environment of the host stomach. As a microaerophilic organism, H. pylori Hp H-19 requires reduced oxygen levels for growth, aligning with its habitat in the gastric mucosa where oxygen availability is limited.↵↵H. pylori Hp H-19 is host-associated, suggesting a specialized adaptation to living within the gastrointestinal tract of its host. The bacterium's spiral morphology may facilitate its motility through the viscous gastric mucus, allowing it to colonize the stomach lining effectively. The microaerophilic nature of this strain reflects its evolutionary adaptation to the unique oxygen conditions encountered in its niche.↵↵Understanding the specific traits of H. pylori Hp H-19 enhances our knowledge of its ecological role within the host's microbiome. Its presence may influence gastric conditions and interact with other microbial populations, potentially impacting host health. Further research into the interactions of this strain with the host environment could provide insights into its biological significance and its role in the broader context of microbial ecology in the stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992066 AKPE00000000.1 Bac0010414 Helicobacter pylori Hp P-2 "Helicobacter pylori Hp P-2 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism optimally thrives at a temperature of 37.0°C, which corresponds to the typical body temperature of its host, suggesting a specialized adaptation for survival within the gastric environment of mammals. ↵↵As a host-associated microbe, H. pylori Hp P-2 is primarily found in the stomach, where it can influence gastric physiology and potentially contribute to various gastrointestinal conditions. Its microaerophilic nature indicates that it requires lower levels of oxygen for growth than are present in the atmosphere, further illustrating its adaptation to the niche provided by the gastric mucosa. ↵↵The unique combination of these traits underlines the bacterium's specialized role in its specific habitat, where it may engage in complex interactions with the host's immune system and microbiota. Understanding these interactions is crucial, as they may have significant implications for gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992073 AKPJ00000000.1 Bac0010415 Helicobacter pylori Hp P-4 "Helicobacter pylori Hp P-4 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of its host. H. pylori Hp P-4 is primarily found in host-associated habitats, suggesting a close symbiotic or pathogenic relationship with its environment, often linked to the gastric mucosa of mammals.↵↵As a microaerophilic organism, H. pylori Hp P-4 requires reduced levels of oxygen for growth, which is consistent with its gastric habitat, where oxygen levels are lower than in the atmosphere. The adaptation to this specific oxygen requirement may provide insights into its survival mechanisms within the harsh acidic environment of the stomach. ↵↵Further understanding of H. pylori Hp P-4's physiological traits can enhance our knowledge of its role in the gastrointestinal ecosystem. The bacterium's ability to thrive at optimal body temperature and in microaerobic conditions may play a crucial role in its interactions with host immune responses and its ecological niche within the gastric microbiome. This suggests that its presence could significantly influence the overall microbial diversity and functionality in the host's stomach, potentially affecting digestive health and disease susceptibility." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992075 AKPL00000000.1 Bac0010416 Helicobacter pylori Hp P-11 "Helicobacter pylori Hp P-11 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and arrangement in singles. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat in host-associated environments, typically within the gastric mucosa of various animal hosts, including humans. ↵↵H. pylori is known for its ability to survive in the acidic conditions of the stomach, a trait facilitated by its unique morphological structure and metabolic adaptations. The microaerophilic nature of this bacterium indicates a requirement for reduced oxygen levels, which is crucial for its growth and survival in the host gastric environment. ↵↵The ecological role of H. pylori, particularly in relation to its host, remains a topic of interest. While it is often associated with gastric disorders in humans, it is also suggested that its presence may have co-evolved with the human microbiome, potentially influencing gastric physiology and immunity. This relationship highlights the complexity of host-microbe interactions, where H. pylori may contribute to both pathogenesis and beneficial effects depending on the host’s overall health and environmental factors. Understanding these dynamics is crucial for elucidating the broader implications of H. pylori in both health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992078 AKPN00000000.1 Bac0010417 Helicobacter pylori Hp P-15 "Helicobacter pylori strain Hp P-15 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, reflecting its adaptation to the warm environment of its host. H. pylori is primarily associated with the gastric mucosa of humans, where it plays a significant role in the complex interactions between the host and its microbiome.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is consistent with its habitat in the gastric environment, where oxygen levels are lower than in the atmosphere. Strain Hp P-15, like other strains of H. pylori, is likely to exhibit metabolic adaptations that allow it to survive and thrive under these specific conditions, making it a subject of interest in studies focused on gastric health and disease.↵↵Understanding the characteristics of H. pylori Hp P-15 can provide insights into its ecological niche within the human stomach, as well as its potential interactions with other microbial inhabitants of the gastric microbiome. Such knowledge may contribute to the broader understanding of host-microbe interactions and the role of microbial communities in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992080 AKPP00000000.1 Bac0010418 Helicobacter pylori Hp P-16 "Helicobacter pylori strain Hp P-16 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0 °C, aligning with conditions typically found within the mammalian gastrointestinal tract, where it is primarily associated with its host. ↵↵H. pylori has garnered significant attention due to its unique adaptations that enable survival in the acidic environment of the stomach. Its microaerophilic nature suggests that it requires reduced oxygen levels for optimal growth, which is consistent with the low-oxygen conditions present in the gastric mucosa. The single-cell arrangement may facilitate its motility and colonization within the host, allowing it to navigate the viscous gastric environment effectively.↵↵The habitat of H. pylori is notably host-associated, indicating its reliance on a specific ecological niche within the gastrointestinal system of its hosts. This association raises intriguing questions about the evolutionary adaptations that enable this microbe to persist and thrive in such a challenging environment. Understanding these traits may provide insights into the complex interactions between H. pylori and its host, particularly in the context of microbial ecology and host-microbe relationships." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992081 AKPQ00000000.1 Bac0010419 Helicobacter pylori Hp P-23 "Helicobacter pylori strain Hp P-23 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and presence as single cells. This organism thrives at an optimal temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. ↵↵H. pylori is predominantly known for colonizing the gastric epithelium, where it can influence the host's gastric environment. Its microaerophilic nature indicates that it requires reduced oxygen levels for optimal growth, which is consistent with the conditions found within the stomach. The unique morphology of H. pylori, particularly its spirilla shape, may facilitate its motility through the viscous gastric mucus layer, potentially enhancing its ability to colonize the gastric niche. ↵↵The ecological role of H. pylori in the human stomach may extend beyond pathogenicity, as it has been suggested that this microbe could play a role in modulating gastric acidity and influencing local microbial communities. This duality highlights the importance of H. pylori in both health and disease contexts, necessitating further investigation into its interactions within the host and its impact on the overall gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992083 AKPR00000000.1 Bac0010420 Helicobacter pylori Hp P-62 "Helicobacter pylori Hp P-62 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and occurrence as single cells. This organism thrives at an optimal temperature of 37.0 °C, which aligns with the typical physiological conditions of its host-associated habitat. ↵↵As a member of the Helicobacter genus, Hp P-62's adaptation to a microaerophilic environment suggests a specialized niche within the gastrointestinal tract, where it may play a role in the complex microbial ecosystem. The bacterium's spiral morphology is thought to facilitate its motility and colonization within the viscous mucus lining of the stomach, potentially allowing it to navigate through varying microenvironments.↵↵Understanding the traits of H. pylori Hp P-62 contributes to a broader comprehension of its ecological role and interactions within the host. Given its preference for specific oxygen levels and temperature, this strain may influence gastric conditions and microbial community dynamics, highlighting its potential importance in the balance of gut microbiota and host health. Further investigation into its interactions with other microbial species could provide insights into its functional significance in the gastrointestinal ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992089 AKPW00000000.1 Bac0010421 Helicobacter pylori Hp H-24c "Helicobacter pylori Hp H-24c is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and arrangement as single cells. This organism thrives optimally at 37.0°C, suggesting a preference for the temperature found within the human body, which aligns with its classification as a host-associated microbe. ↵↵As a spirilla, H. pylori exhibits a distinctive corkscrew morphology, which may facilitate its motility in the viscous environment of the gastric mucosa. Its microaerophilic nature implies that it requires reduced oxygen levels for optimal growth, a characteristic that is significant given its natural habitat in the stomach, where oxygen concentration is limited.↵↵The adaptation of H. pylori to its niche is noteworthy; the bacterium’s ability to survive and proliferate in acidic conditions, combined with its motility, allows it to colonize the gastric epithelium effectively. This unique ecological adaptation may play a vital role in its interactions with the host environment, influencing not only its survival strategies but also the dynamics of the gastric microbiome. Understanding these traits can provide insights into the complex relationships between host-associated microbes and their environments, particularly in the context of gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992095 AKPZ00000000.1 Bac0010422 Helicobacter pylori Hp P-3b "Helicobacter pylori Hp P-3b is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, indicating its preference for reduced oxygen levels, which is consistent with its habitat as a host-associated organism. The optimal growth temperature for H. pylori Hp P-3b is approximately 37.0°C, aligning with the typical physiological temperature of the human stomach, suggesting a specialized adaptation to this niche.↵↵The spirilla morphology of H. pylori Hp P-3b enhances its motility, enabling efficient colonization and survival in the gastric mucosa. As a microaerophilic organism, it requires a specific atmospheric composition, which is crucial for its metabolic processes, particularly during growth within the stomach's unique environment. This adaptation may also influence its interactions with the host’s immune system and microbiota.↵↵The ecological niche of H. pylori Hp P-3b underscores the complexity of microbial life in the human gastrointestinal tract, where it plays a role in the intricate balance of the microbial community. Understanding its characteristics, such as the specific oxygen requirements and temperature preferences, provides insight into its survival strategies and potential implications for human health. This knowledge may pave the way for further research on the ecological dynamics of gastric microbiota and their influence on health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992100 AKQC00000000.1 Bac0010423 Helicobacter pylori Hp P-4c "Helicobacter pylori Hp P-4c is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement, thriving in microaerophilic conditions at an optimal temperature of 37.0°C. This microbe is primarily host-associated, indicating a close relationship with its ecological niche, typically found in the gastric mucosa of mammals. ↵↵The microaerophilic nature of H. pylori Hp P-4c suggests it requires reduced oxygen levels for optimal growth, which aligns with its habitat within the stomach, where oxygen concentration is lower than in the external environment. The ability to flourish in such conditions underscores its adaptation to the unique biochemical milieu of the gastric environment. ↵↵Understanding the traits of H. pylori Hp P-4c can provide insights into its role within the host and its potential interactions with the host's immune system and microbiome. The microaerophilic lifestyle, combined with its specific temperature preference, may influence its metabolic pathways and enzymatic activities, contributing to its survival and persistence in the gastric habitat. This adaptation might also reflect broader ecological interactions within the gastrointestinal tract, where such specialized microorganisms can play significant roles in digestion and health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992102 AKQD00000000.1 Bac0010424 Helicobacter pylori Hp P-13b "Helicobacter pylori Hp P-13b is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and occurrence as single cells. This strain thrives optimally at a temperature of 37.0°C, suggesting a close association with warm-blooded hosts, where it is typically found in the gastric mucosa. The microaerophilic nature of H. pylori Hp P-13b indicates that it requires reduced levels of oxygen to grow, aligning with its habitat in the acidic environment of the stomach, where oxygen concentration is lower than in the atmosphere.↵↵Due to its unique morphology and physiological requirements, H. pylori Hp P-13b plays a significant role in understanding the adaptations of microorganisms to host-associated environments. The single-cell arrangement is particularly noteworthy, as it may influence the bacterium's interaction with host cells and its ability to colonize the gastric epithelium. These traits collectively highlight the specialized niche that H. pylori Hp P-13b occupies, providing insights into the evolutionary pressures that shape microbial life in the gastric ecosystem. The unique adaptations of this strain may offer valuable perspectives on microbial survival strategies in hostile environments, emphasizing the intricate relationships between hosts and their associated microbiota." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992107 AKQI00000000.1 Bac0010425 Helicobacter pylori Hp P-25c "Helicobacter pylori Hp P-25c is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and singular cell arrangement. This organism thrives optimally at a temperature of 37.0 °C, which aligns with its adaptation to a host-associated habitat, suggesting a close relationship with warm-blooded hosts. ↵↵H. pylori is well-known for its colonization of the gastric mucosa, where it can influence local microbial communities and host physiology. The microaerophilic nature of Hp P-25c indicates that it requires reduced levels of oxygen for growth, a condition typically found in the gastric environment, where oxygen levels are lower than in ambient air. This adaptation not only facilitates its survival but may also play a role in its interactions with the host's immune system and the gastric ecosystem.↵↵The unique morphological characteristic of being spirilla may enhance the bacterium's motility, allowing it to navigate through the viscous mucus layer of the stomach lining. Understanding the physiological and ecological traits of H. pylori Hp P-25c can provide insights into its role in the gastrointestinal microbiome and its potential impact on host health, particularly in relation to gastric conditions. The bacterium's adaptability to specific microenvironments underscores the complexity of host-associated microbial communities and their dynamic interactions within the gastric niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992111 AKQK00000000.1 Bac0010426 Helicobacter pylori Hp P-25d "Helicobacter pylori strain Hp P-25d is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions typical of its host-associated habitat, where it is often found in the gastric mucosa of mammals, including humans. ↵↵The microaerophilic nature of H. pylori indicates that it requires a reduced oxygen environment for growth, which is consistent with its ecological niche within the gastric environment, where oxygen levels are lower than in the atmosphere. This adaptation is crucial for its survival and potential metabolic processes, allowing it to maintain a stable presence in the harsh acidic conditions of the stomach.↵↵The strain Hp P-25d exemplifies the structural features and environmental preferences of its genus, reflecting the broader ecological strategies employed by Helicobacter species. Understanding these traits enhances our comprehension of the survival mechanisms of H. pylori in its host environment, particularly its ability to navigate the complex interactions within the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992112 AKQL00000000.1 Bac0010427 Helicobacter pylori Hp P-28b "Helicobacter pylori strain Hp P-28b is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism optimally thrives at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, Hp P-28b is likely to inhabit the gastric environment, where microaerophilic conditions prevail. The ability to survive in such an environment suggests that this strain possesses specialized metabolic pathways that allow it to utilize limited oxygen levels effectively while possibly metabolizing various substrates present in the host's stomach. ↵↵The ecological role of Hp P-28b may be influenced by its interactions within the host, which could affect gastric pH levels or local microbial community dynamics. The unique adaptations of this strain to its microaerophilic and temperature-specific habitat highlight the intricate relationships that exist between host-associated microbes and their environments, emphasizing the potential for specialized ecological niches within the human microbiome. Further research on this strain could provide valuable insights into its biological functions and contributions to host health or disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992114 AKQM00000000.1 Bac0010428 Helicobacter pylori Hp M5 "Helicobacter pylori Hp M5 is a Gram-negative bacterium characterized by its spiral shape and presence as single cells. This microbe thrives in microaerophilic conditions, requiring a reduced oxygen atmosphere for optimal growth, and prefers an optimal temperature of 37.0°C, aligning with the typical human body temperature. As a host-associated organism, H. pylori Hp M5 is commonly found in the gastric environment of mammals, where it may contribute to various physiological interactions.↵↵The microaerophilic nature of H. pylori Hp M5 suggests a specialized adaptation to its niche within the gastric mucosa, where oxygen levels are lower than in the external environment. This adaptation may facilitate its survival and colonization in the host's stomach, allowing it to evade the immune response and maintain a persistent presence. The unique structural characteristics of the spiral shape may also play a role in its motility and ability to navigate the viscous gastric mucus, further enhancing its ecological success within this specific habitat.↵↵Overall, the traits of H. pylori Hp M5 underscore its evolutionary adaptations to a microaerophilic, host-associated lifestyle, reflecting the intricate relationships between microbial inhabitants and their hosts in maintaining gastric health and homeostasis." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992121 AKQR00000000.1 Bac0010429 Helicobacter pylori Hp M6 "Helicobacter pylori Hp M6 is a Gram-negative bacterium characterized by its spirilla shape and arrangement in singles. This microbe thrives in a microaerophilic environment, with an optimal growth temperature of 37.0°C, which aligns with the physiological conditions typically found within the gastric mucosa of its host. As a host-associated organism, H. pylori Hp M6 is adapted to colonize the stomach, where it may play a role in the complex interactions between the host and its microbial inhabitants.↵↵The microaerophilic requirement suggests that H. pylori Hp M6 thrives in low-oxygen environments, which is consistent with its natural habitat in the gastric epithelium, where oxygen levels are significantly lower than in atmospheric conditions. This trait may contribute to its survival and persistence in the harsh acidic environment of the stomach.↵↵Moreover, the single-cell arrangement may facilitate its motility and ability to navigate the viscous gastric mucus, potentially influencing its colonization dynamics. Understanding the specific traits of H. pylori Hp M6 may provide insights into its ecological niche and the evolutionary adaptations that enable it to persist in the gastrointestinal tract of humans and other hosts. Further research into its interactions with the host immune system could also elucidate its role in the gastric microbiome and its long-term implications for human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992122 AKQS00000000.1 Bac0010430 Helicobacter pylori Hp M9 "Helicobacter pylori Hp M9 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This organism thrives optimally at 37.0°C, aligning with the temperature of the human stomach, where it is typically found. As a host-associated microbe, H. pylori Hp M9 occupies a specific niche within the gastric environment, where it plays a complex role in the host's microbiome.↵↵The microaerophilic nature of H. pylori Hp M9 suggests that it requires reduced oxygen levels for growth, which is consistent with its gastric habitat, where oxygen concentration is low. This adaptation may provide insights into its survival mechanisms in a highly acidic environment, as well as its interactions with the host's immune system. ↵↵Understanding the physiological traits of H. pylori Hp M9 can enhance our knowledge of its ecological role within the gastrointestinal tract, particularly its potential influence on gastric health and disease. The unique combination of its morphological characteristics and habitat preferences may allow it to interact with other microorganisms and the host in ways that are essential for maintaining microbial balance within the stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992125 AKQT00000000.1 Bac0010431 Streptococcus pneumoniae PCS8106 "Streptococcus pneumoniae PCS8106 is a Gram-positive coccus that typically arranges itself in chains or pairs. This facultative anaerobe thrives optimally at a temperature of 30.0°C, suggesting a preference for moderate environmental conditions. The organism is known to inhabit a diverse range of habitats, which may contribute to its adaptability and survival in various ecological niches.↵↵The chain and pair arrangement of S. pneumoniae PCS8106 is characteristic of the genus Streptococcus, which is notable for its diverse metabolic capabilities and adaptive strategies. The facultative anaerobic nature of this strain indicates its ability to grow in both the presence and absence of oxygen, allowing it to exploit different environments effectively. This versatility may play a role in its interactions within microbial communities and its survival strategies under fluctuating oxygen levels.↵↵The ecological implications of S. pneumoniae PCS8106's adaptability are significant, as its ability to thrive in multiple habitats may facilitate its role in various biological processes, such as nutrient cycling and microbial succession in different environments. Understanding the specific ecological roles of this strain could provide insights into its interactions within microbial ecosystems and its potential impacts on local biodiversity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 1159081 AKQV00000000.1 Bac0010432 Streptococcus pneumoniae PCS8203 "Streptococcus pneumoniae PCS8203 is a Gram-positive coccus characterized by its arrangement in chains and pairs, indicative of its bacterial morphology. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen. ↵↵The habitat of S. pneumoniae PCS8203 is noted to be multiple, suggesting a versatile ecological niche that may include various environments where it can adapt and proliferate. This adaptability to different habitats and oxygen conditions may play a significant role in its survival and potential interactions with other microbial communities. Understanding its traits can provide insights into its ecological dynamics and the factors influencing its distribution. ↵↵Overall, the combination of its morphological characteristics and metabolic capabilities underscores the ecological flexibility of Streptococcus pneumoniae PCS8203, potentially influencing its role in diverse environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 1159082 AKQW00000000.1 Bac0010433 Streptococcus pneumoniae PNI0446 "Streptococcus pneumoniae PNI0446 is a Gram-positive coccus characterized by its arrangement in chains and pairs. This microbe thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic respiration, allowing it to adapt to a variety of oxygen levels in its environment. ↵↵S. pneumoniae PNI0446 is found in multiple habitats, indicating its versatility and potential for colonization in diverse ecological niches. The ability to grow in both aerobic and anaerobic conditions suggests that this strain can occupy various environments where oxygen availability fluctuates, which may include human-associated microbiomes or other ecological settings.↵↵Understanding the traits of S. pneumoniae PNI0446 can provide insights into its survival strategies in different habitats. For instance, the facultative anaerobic nature may allow it to thrive in environments where oxygen is transiently depleted, potentially enhancing its resilience and adaptability. This characteristic could play a role in its interactions with other microbial communities or host organisms and may inform future studies aimed at elucidating its ecological impact and functional roles within its habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 1159102 AKRL00000000.1 Bac0010434 Leptospira noguchii strain HAI1536 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira noguchii 28182 AKWD00000000.2 Bac0010435 Leptospira kirschneri str. 200801925 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira kirschneri 1193046 AKWK00000000.2 Bac0010436 Leptospira interrogans serovar Pyrogenes str. 200701872 "Leptospira interrogans serovar Pyrogenes str. 200701872 is a Gram-negative, spiral-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 28.0°C. This microbe is classified under the genus Leptospira, which is notable for its distinctive spiral morphology and motility, characteristics that facilitate its movement in liquid environments. ↵↵L. interrogans serovar Pyrogenes is primarily found in host-associated habitats, implying a close association with living organisms, which may serve as reservoirs for its survival and transmission. The aerobic nature of this strain suggests that it requires molecular oxygen for growth, a trait that might influence its ecological niche and interactions within host environments. ↵↵The specific growth conditions and habitat preferences of L. interrogans serovar Pyrogenes str. 200701872 highlight its potential role in the complex dynamics of host-associated microbial communities. Understanding these traits can provide insights into the microbe's ecological interactions and its adaptations to life within hosts, contributing to our broader knowledge of bacterial behavior and ecology in relation to host organisms." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 1193029 AKWN00000000.2 Bac0010437 Leptospira borgpetersenii str. 200701203 "Leptospira borgpetersenii str. 200701203 is a Gram-negative, non-sporulating spirochete that exhibits a characteristic spirilla shape. This microbe is classified as an aerobe, indicating that it requires oxygen for growth and metabolism. Its habitat is primarily host-associated, suggesting a close relationship with its host organisms, which may provide essential nutrients and a suitable environment for survival and proliferation.↵↵As a member of the genus Leptospira, this strain is part of a group of bacteria known for their distinctive helical morphology and motility, which may contribute to their ecological roles within host systems. The non-sporulating nature of L. borgpetersenii str. 200701203 implies that it relies on its host for sustenance and may possess specific adaptations that allow it to thrive in the host-associated environment.↵↵Understanding the traits of Leptospira borgpetersenii str. 200701203 enhances our knowledge of the ecological dynamics and interactions between this microbe and its host. The requirement for aerobic conditions may also suggest that this strain plays a role in oxygen-rich microenvironments within its host, potentially influencing host microbiota composition or metabolic processes. Further research into its specific interactions within host systems could yield insights into the ecological significance of this organism and its adaptations to aerobic environments." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 1193007 AKWO00000000.2 Bac0010438 Leptospira noguchii serovar Panama str. CZ214 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira noguchii 1001595 AKWY00000000.2 Bac0010439 Leptospira noguchii str. 2001034031 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira noguchii 1193053 AKXB00000000.2 Bac0010440 Rhodovulum sp. PH10 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sp. PH10 1187851 AKZI00000000.1 Bac0010441 Alicyclobacillus hesperidum URH17-3-68 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus hesperidum 1200346 AKZN00000000.1 Bac0010442 Alishewanella aestuarii B11 "Alishewanella aestuarii B11 is a Gram-negative, rod-shaped bacterium that thrives optimally at 37.0°C. This mesophilic organism is part of the diverse microbial community found in estuarine environments, suggesting its potential role in biogeochemical processes in these habitats. The Gram-negative cell wall structure implies the presence of an outer membrane containing lipopolysaccharides, which may contribute to its survival in variable salinity conditions typical of estuarine ecosystems.↵↵Given its rod shape, A. aestuarii B11 may exhibit motility, which could facilitate its movement within the aqueous environments where it is commonly found. The optimal growth temperature indicates a preference for warm conditions, aligning with the thermal profiles of shallow coastal waters where estuarine microbes are often studied.↵↵The ecological significance of A. aestuarii B11 may extend to its interactions within microbial consortia, potentially influencing nutrient cycling and organic matter degradation in its environment. This bacterium represents a key component of the microbiota that can adapt to the dynamic conditions of estuaries, highlighting the importance of such microbes in maintaining ecosystem health and resilience. Understanding the specific metabolic pathways and interactions of A. aestuarii B11 could provide insight into its functional role in estuarine biogeochemistry." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alishewanella Alishewanella aestuarii Gram-negative rod 37 mesophilic 1197174 ALAB00000000.1 Bac0010443 Neobacillus vireti LMG 21834 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Neobacillus Neobacillus vireti 1131730 ALAN00000000.1 Bac0010444 Solidesulfovibrio magneticus str. Maddingley MBC34 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio magneticus 1206767 ALAO00000000.1 Bac0010445 Streptococcus pneumoniae 2070335 "Streptococcus pneumoniae 2070335 is a Gram-positive coccus that typically forms chains or pairs and demonstrates a facultative anaerobic metabolism. This strain thrives optimally at a temperature of 30.0°C, suggesting a preference for moderately warm environments. Streptococcus pneumoniae is known to inhabit multiple ecological niches, indicating its versatility and potential for adaptation in various habitats.↵↵The ability of S. pneumoniae 2070335 to grow in both the presence and absence of oxygen highlights its metabolic flexibility, which may contribute to its survival in diverse environments where oxygen levels can fluctuate. This trait is particularly relevant in human-associated microbiomes, where oxygen availability varies significantly between aerobic and anaerobic regions.↵↵Further, the chain and pair arrangement of these cocci is characteristic of its genus, facilitating the study of its morphology and behavior in culture. The presence of this strain in multiple habitats emphasizes the ecological significance of S. pneumoniae, suggesting that it may play roles in microbial communities beyond its well-documented associations with human health. Understanding the ecological dynamics of such strains can provide insights into their interactions within microbial ecosystems and their potential responses to environmental changes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 914141 ALBB00000000.1 Bac0010446 Actinomyces sp. ICM47 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. ICM47 936548 ALCA00000000.1 Bac0010447 Actinomyces sp. ICM39 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. ICM39 1105029 ALCB00000000.1 Bac0010448 Streptococcus infantis SPAR10 "Streptococcus infantis SPAR10 is a Gram-positive coccus that exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. This bacterium is characterized by its spherical shape, which is typical of the Streptococcus genus, and it likely forms chains or pairs in culture. The facultative anaerobic metabolic capability of S. infantis SPAR10 suggests an adaptability to various ecological niches, potentially including the human microbiome, where it may play a role in maintaining microbial balance. ↵↵Due to its Gram-positive nature, S. infantis SPAR10 possesses a thick peptidoglycan layer in its cell wall, which could contribute to its resilience in diverse habitats. The ability to utilize different types of metabolic pathways indicates potential versatility in nutrient acquisition, which could be significant in competitive environments. The ecological implications of this trait might extend to its interactions with other microorganisms, where it could participate in complex biochemical processes, influencing community dynamics.↵↵Overall, the traits of S. infantis SPAR10 suggest that it may serve an important role in its ecological niche, possibly contributing to the stability of microbial communities through its metabolic flexibility and adaptive growth strategies. Further studies could elucidate its specific interactions and functional contributions within these environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe 1159208 ALCH00000000.1 Bac0010449 Burkholderia multivorans CF2 "Burkholderia multivorans CF2 is a Gram-negative, rod-shaped bacterium that is classified as an aerobic organism and is nonsporulating. This microbe is primarily host-associated, indicating its presence in environments that involve interaction with living hosts. The aerobic nature of B. multivorans CF2 suggests an adaptation to environments where oxygen is readily available, which is often a characteristic of microbes found in more specialized ecological niches.↵↵The nonsporulating trait of B. multivorans CF2 infers that it does not form spores as a means of survival under adverse conditions, which may limit its resilience in fluctuating environments. As a result, its survival and propagation may depend heavily on the ecological context provided by its host. Understanding the relationship between B. multivorans CF2 and its host could shed light on the microbe's role within the microbiome, particularly in how it contributes to or influences host health and interactions with other microbiota.↵↵Overall, the habitat specificity and aerobic requirements of Burkholderia multivorans CF2 suggest it may play a significant role in the dynamics of microbial communities associated with host organisms, potentially influencing metabolic processes and nutrient cycling within those environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 985078 ALIX00000000.1 Bac0010450 Actinomyces sp. ICM58 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. ICM58 1105030 ALIY00000000.1 Bac0010451 Halogranum salarium B-1 162.HSB1.1_17 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogranum Halogranum rubrum 553466 ALJD00000000.1 Bac0010452 Achromobacter marplatensis strain HLE Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter marplatensis 470868 ALJE00000000.1 Bac0010453 Agrobacterium albertimagni AOL15 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium albertimagni 1156935 ALJF00000000.1 Bac0010454 Lachnoanaerobaculum sp. ICM7 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoanaerobaculum Lachnoanaerobaculum sp. ICM7 936594 ALJL00000000.1 Bac0010455 Peptostreptococcaceae bacterium AS15 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcaceae bacterium AS15 936556 ALJM00000000.1 Bac0010456 Haemophilus sputorum HK 2154 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus sputorum microaerophile 1078483 ALJP00000000.1 Bac0010457 Selenomonas sp. FOBRC9 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. FOBRC9 936573 ALJR00000000.1 Bac0010458 Streptococcus sp. BS35b Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. BS35b 1105032 ALKH00000000.1 Bac0010459 Streptococcus sp. AS14 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. AS14 936577 ALKI00000000.1 Bac0010460 Fusobacterium necrophorum subsp. funduliforme Fnf 1007 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum 1161424 ALKK00000000.1 Bac0010461 Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 "Mycolicibacterium fortuitum subsp. fortuitum DSM 46621, also known as ATCC 6841, is a non-sporulating, rod-shaped bacterium characterized as a facultative anaerobe and a chemoheterotroph. This microorganism thrives optimally at a temperature of 30.0°C and is commonly found in soil environments, suggesting a role in terrestrial ecosystems.↵↵As a facultative anaerobe, M. fortuitum subsp. fortuitum has the ability to grow in both aerobic and anaerobic conditions, allowing it to exploit a variety of ecological niches. Its chemoheterotrophic mode of metabolism indicates that it relies on organic compounds as a source of carbon and energy, which aligns with its soil habitat where organic matter is abundant. ↵↵The adaptability of M. fortuitum subsp. fortuitum to different oxygen levels may provide it with a competitive advantage in diverse soil environments, enabling it to participate in the breakdown of complex organic materials. This could have implications for nutrient cycling and the overall health of soil ecosystems. Further studies could elucidate the specific roles this bacterium plays in soil microbiomes and its interactions with other microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium fortuitum Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Soil Nonsporulating 1766 ALQB00000000.1 Bac0010462 Xenococcus sp. PCC 7305 Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Xenococcaceae Xenococcus Xenococcus sp. PCC 7305 102125 ALVZ00000000.1 Bac0010463 Thaumarchaeota archaeon SCGC AB-539-E09 Thermoproteati Nitrososphaerota Thaumarchaeota archaeon SCGC AB-539-E09 1198115 ALXK00000000.1 Bac0010464 Lachnospiraceae bacterium JC7 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium JC7 1165092 ALYD00000000.1 Bac0010465 Rhodopirellula baltica SH28 cSH280182 "Rhodopirellula baltica SH28 cSH280182 is a Gram-negative, ovoid-shaped bacterium that exhibits aerobic growth and is non-spore-forming. This marine microorganism thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm aquatic environments. The Gram-negative characteristic suggests that it possesses a thin peptidoglycan layer and an outer membrane, which can influence its interactions with the surrounding environment, including nutrient uptake and susceptibility to antibiotics.↵↵As an aerobic organism, R. baltica relies on oxygen for its metabolic processes, which is typical for many marine bacteria that inhabit well-oxygenated waters. The absence of sporulation indicates that this strain does not produce spores as a survival mechanism under adverse conditions, which may reflect its ecological niche where stable environmental conditions are more prevalent.↵↵Rhodopirellula baltica has been studied for its potential role in biogeochemical cycles within marine ecosystems, particularly in the degradation of organic matter. Its adaptation to aerobic conditions and specific temperature preference may provide insights into the microbial community dynamics in coastal environments, where temperature fluctuations and oxygen availability are critical factors. Understanding the traits of R. baltica can enhance our knowledge of microbial diversity and function in marine habitats, highlighting its potential contributions to nutrient cycling and ecosystem health." Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula baltica Gram-negative ovoid non-motile aerobic 29 mesophilic non-spore-forming 265606 AMCW00000000.1 Bac0010466 Corynebacterium durum F0235 "Corynebacterium durum F0235 is a Gram-positive, non-spore-forming rod-shaped bacterium that exhibits microaerophilic growth characteristics. This microbial organism is part of the genus Corynebacterium, which is known for its diverse metabolic capabilities and ecological roles. As a microaerophile, C. durum F0235 thrives in environments with lower levels of oxygen than are typically found in the atmosphere, suggesting an adaptation to specific ecological niches where oxygen concentration is limited.↵↵The rod shape of C. durum F0235 may influence its motility and colonization abilities within its environment, although specific motility traits have not been documented. The absence of sporulation indicates that this bacterium relies on vegetative growth for survival and reproduction, which may affect its resilience in fluctuating environmental conditions.↵↵Corynebacterium species are often associated with various habitats, including soil, water, and plant surfaces, indicating a potential role in nutrient cycling and organic matter decomposition. The unique microaerophilic requirement of C. durum F0235 could suggest a symbiotic relationship with other microorganisms that may help to create localized oxygen-poor conditions, thus enhancing its ecological interactions. Understanding these traits provides insight into the ecological niches occupied by C. durum F0235 and its potential contributions to microbial community dynamics." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium durum Gram-positive rod non-motile microaerophile non-spore-forming 1035195 AMEM00000000.1 Bac0010467 Brevundimonas diminuta 470-4 "Brevundimonas diminuta 470-4 is a Gram-negative anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This microbe exhibits a unique metabolic versatility that allows it to utilize alternative electron acceptors, which is typical for anaerobes. The Gram-negative nature of B. diminuta 470-4 suggests a complex outer membrane structure, potentially influencing its interactions with the surrounding environment and other microorganisms.↵↵As an anaerobe, B. diminuta 470-4 is adapted to conditions that limit the availability of oxygen, which may include diverse habitats such as sediments, decaying organic matter, or certain niche environments in the human microbiome. The lack of oxygen not only shapes its metabolic pathways but may also influence its ecological role in nutrient cycling and organic matter decomposition.↵↵Further understanding of B. diminuta 470-4 could reveal insights into its potential applications in bioremediation or biotechnological processes, particularly in anaerobic digestion or waste treatment, where its metabolic capabilities could be harnessed to break down complex organic compounds. The successful adaptation of this bacterium to anaerobic conditions underscores the broader ecological significance of anaerobic microorganisms in maintaining ecosystem balance and facilitating nutrient turnover in oxygen-limited environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas diminuta Negative Anaerobe 1035191 AMFA00000000.1 Bac0010468 Bradyrhizobium sp. DFCI-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. DFCI-1 1230476 AMFB00000000.1 Bac0010469 Acinetobacter sp. OIFC021 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. OIFC021 903928 AMFR00000000.1 Bac0010470 Cecembia lonarensis LW9 "Cecembia lonarensis LW9 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic capabilities and thrives optimally at a temperature of 32.0°C. This organism's Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various environmental conditions. The rod shape may facilitate motility and nutrient absorption, allowing it to effectively occupy its ecological niche.↵↵Aerobic respiration is a key characteristic of Cecembia lonarensis LW9, suggesting that it relies on oxygen for energy production. This trait is significant as it may influence the microbe's habitat preferences, potentially linking it to environments rich in oxygen where other microbial communities coexist. The optimal growth temperature of 32.0°C indicates a preference for moderate thermal conditions, which may suggest adaptations to specific ecological niches that experience such temperatures.↵↵Understanding the physiological and environmental conditions preferred by Cecembia lonarensis LW9 can offer insights into its ecological role. For instance, its aerobic nature may indicate a crucial role in the cycling of organic materials in oxygenated environments, where it could contribute to the degradation of organic compounds and the maintenance of microbial diversity. Such metabolic activities might position Cecembia lonarensis LW9 as an important player in its ecosystem, potentially influencing nutrient dynamics and interactions with other microbial species." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cecembia Cecembia lonarensis Gram-negative rod non-motile aerobic 32 mesophilic 1225176 AMGM00000000.1 Bac0010471 Methanobacterium sp. Maddingley MBC34 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. Maddingley MBC34 1220534 AMGN00000000.1 Bac0010472 Helicobacter pylori R018c "Helicobacter pylori R018c is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This species thrives optimally at a temperature of 37.0°C, suggesting its adaptation to the physiological conditions of its host environment. H. pylori R018c is primarily associated with host organisms, where it resides in the gastric niche. ↵↵The microaerophilic nature of this strain indicates a preference for environments with reduced oxygen levels, which is consistent with the conditions found within the gastric mucosa. This adaptation may play a significant role in its survival and functionality within the host. ↵↵Given the unique spiral morphology of H. pylori R018c, it is well-suited for colonizing the viscous and acidic environment of the stomach, possibly aiding in its motility through the mucus layer. Understanding the specific traits of H. pylori R018c contributes to a broader comprehension of the ecological dynamics of gastric microbiota and highlights the importance of host-associated microorganisms in maintaining gastric health and function." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1145110 AMOQ00000000.1 Bac0010473 Helicobacter pylori R030b "Helicobacter pylori R030b is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, aligning with its adaptation to a host-associated habitat, where it typically resides in the gastric environment of mammals. As a microaerophilic organism, H. pylori R030b requires reduced oxygen levels for growth, which reflects its specialized niche within the gastric mucosa, where oxygen concentrations are lower than in the atmospheric environment.↵↵The unique morphology and physiological requirements of H. pylori R030b highlight its evolutionary adaptations for survival in the challenging conditions of the stomach. This bacterium's spiral form may facilitate its motility through viscous gastric mucus, enabling it to colonize and persist in its host environment effectively. Understanding the traits of H. pylori R030b can provide insights into its ecological role within the host and its interactions with the host immune system, which may influence gastric health and disease outcomes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1145111 AMOR00000000.1 Bac0010474 Helicobacter pylori R32b "Helicobacter pylori R32b is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated microbe. Its unique morphology as a spirilla may facilitate its movement through the viscous environment of the gastric mucosa, where it typically resides.↵↵As a microaerophilic organism, H. pylori R32b requires a reduced oxygen concentration for optimal growth, which aligns with its ecological niche in the stomach, where oxygen levels are lower than in the atmosphere. The adaptation to a host-associated lifestyle suggests that this microbe has evolved specific mechanisms to survive and proliferate in the acidic conditions of the gastric environment, potentially influencing the host's health.↵↵Given its specialized habitat and metabolic requirements, H. pylori R32b may play a significant role in the microbial community of the gastrointestinal tract. Its ability to establish itself in a highly competitive and hostile environment underscores the intricate relationships between host organisms and their resident microbiota, highlighting the importance of understanding such microbes in the context of host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1145112 AMOS00000000.1 Bac0010475 Helicobacter pylori R037c "Helicobacter pylori R037c is a Gram-negative, microaerophilic bacterium characterized by its distinct spirilla shape and solitary cell arrangement. This organism thrives optimally at 37.0°C, aligning closely with the typical body temperature of its host, suggesting a strong evolutionary adaptation to host-associated environments. H. pylori R037c is predominantly found in the gastric mucosa of various hosts, where it may contribute to the complex microbiota of the gastrointestinal tract.↵↵The microaerophilic nature of H. pylori R037c indicates that it requires reduced oxygen levels for optimal growth, which is consistent with its habitat in the stomach, where oxygen concentrations are lower than in the external environment. This trait may influence its interactions with other microbial species and the host immune system, potentially shaping the microbial community structure within the gastric niche.↵↵Given its specific temperature and oxygen requirements, H. pylori R037c may play a role in maintaining gastric homeostasis and influencing host digestive processes. The unique physiological adaptations of this strain highlight the intricate relationships between host-associated microbes and their environments, emphasizing the importance of studying such organisms to understand their contributions to host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1145114 AMOU00000000.1 Bac0010476 Helicobacter pylori R056a "Helicobacter pylori R056a is a Gram-negative bacterium characterized by its spiral shape (spirilla) and a tendency to exist as single cells. This microbe is optimally adapted to grow at 37.0°C, which aligns with its habitat as a host-associated organism, commonly found in the gastric environment of mammals. H. pylori R056a is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth, a condition typically found in the stomach where oxygen concentration is lower than in the external environment.↵↵This bacterium's unique morphology and growth requirements suggest that it has evolved to thrive in the acidic and nutrient-rich conditions of the gastric mucosa, where it may play a role in the complex microbiota of the stomach. Its adaptation to microaerophilic conditions is particularly fascinating, as it may enable H. pylori R056a to effectively colonize and persist in an environment that is hostile to many other microbial species. Understanding the specific environmental adaptations of H. pylori R056a can provide insights into its ecological niche and potential interactions within the gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1145118 AMOY00000000.1 Bac0010477 Bifidobacterium bifidum LMG 13195 "Bifidobacterium bifidum LMG 13195 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. This species is part of the diverse genus Bifidobacterium, which is known for its prevalence in the gastrointestinal tract of mammals, particularly in humans and other warm-blooded animals. ↵↵As an anaerobe, B. bifidum LMG 13195 relies on fermentation processes for energy production, contributing to the anaerobic microbial community within the host. Its presence in the gut is often linked to beneficial effects on host health, such as the modulation of gut microbiota and potential support of the immune system. The association of B. bifidum with specific host environments suggests its role in maintaining gut homeostasis and influencing digestive health through the production of short-chain fatty acids and other metabolic byproducts.↵↵Understanding the specific interactions of B. bifidum LMG 13195 with the host environment can provide insights into its potential applications in probiotics and gut health management. Given its unique habitat and metabolic capabilities, this bacterium may play a significant role in the overall balance of gut microbiota, highlighting its importance in digestive physiology and microbial ecology." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1207542 AMPL00000000.1 Bac0010478 Bifidobacterium bifidum IPLA 20015 "Bifidobacterium bifidum IPLA 20015 is a Gram-positive, non-sporulating, rod-shaped bacterium that primarily inhabits host-associated environments. This strain is classified as an anaerobe, indicating that it thrives in oxygen-free conditions, which is characteristic of the gastrointestinal tract of mammals, including humans. Bifidobacterium bifidum is recognized for its role in gut health, where it contributes to the maintenance of a balanced microbiota and may aid in the digestion of dietary fibers.↵↵The specific habitat of Bifidobacterium bifidum IPLA 20015 suggests a potential specialization in interactions with the host’s immune system. Its presence in the gastrointestinal environment may influence not only nutrient absorption but also the overall health of the host by modulating immune responses. This highlights the importance of gut-associated microbes in fostering a symbiotic relationship with their hosts, underscoring their potential role in promoting health and preventing disease.↵↵In summary, Bifidobacterium bifidum IPLA 20015 exemplifies the complex interplay between host and microbiota, as its anaerobic lifestyle and rod shape facilitate its adaptation to the unique conditions found within the gastrointestinal tract. Further studies could elucidate its specific contributions to gut health and its potential applications in probiotic therapies." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1207543 AMPM00000000.1 Bac0010479 Salimicrobium jeotgali strain MJ3 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salimicrobium Salimicrobium jeotgali 1230341 AMPQ00000000.1 Bac0010480 Lactococcus garvieae DCC43 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae 1231377 AMQS00000000.1 Bac0010481 Idiomarina xiamenensis 10-D-4 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina xiamenensis 740709 AMRG00000000.1 Bac0010482 Oceanibaculum indicum P24 "Oceanibaculum indicum P24 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 32.0°C. This species is part of the diverse microbial communities found in marine environments, where temperature and salinity can vary significantly. The Gram-negative classification indicates that O. indicum P24 possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with other microorganisms and the environment.↵↵As a member of the Oceanibaculum genus, O. indicum P24 may contribute to biogeochemical processes in marine ecosystems, such as nutrient cycling and organic matter decomposition. The rod shape of this microbe can enhance its mobility in aquatic habitats, potentially allowing for effective colonization of various niches within the oceanic environment.↵↵The optimal growth temperature of 32.0°C suggests that O. indicum P24 is well adapted to warm marine waters, which may correlate with its ability to thrive in specific thermal niches. This adaptation could provide insights into the microbial dynamics of oceanic environments, particularly in relation to climate change and its effects on marine microbial diversity and function. Overall, the traits of Oceanibaculum indicum P24 highlight its potential role in maintaining ecosystem health and resilience in marine habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Oceanibaculaceae Oceanibaculum Oceanibaculum indicum Gram-negative rod 32 mesophilic 1207063 AMRL00000000.1 Bac0010483 Nitratireductor pacificus pht-3B Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor pacificus 391937 AMRM00000000.1 Bac0010484 Candidatus Photodesmus katoptron Akat1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Candidatus Photodesmus Candidatus Photodesmus anomalopis 1236703 AMSD00000000.1 Bac0010485 Stutzerimonas degradans strain Chol1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas degradans 2968968 AMSL00000000.1 Bac0010486 Brevibacterium casei S18 "Brevibacterium casei S18 is a Gram-positive, aerobic bacterium that is part of the diverse genus Brevibacterium. This microbe exhibits a rod-shaped morphology and is known for its ability to thrive in aerobic environments, requiring oxygen for its metabolic processes. The Gram-positive nature of B. casei S18 suggests a thick peptidoglycan layer in its cell wall, which is characteristic of this classification.↵↵Although specific details regarding its biochemical capabilities and ecological niche are not provided, members of the Brevibacterium genus are typically associated with environments rich in organic matter, such as dairy products and soil. The aerobic requirement of B. casei S18 indicates a potential role in processes that involve the breakdown of organic substrates in the presence of oxygen, possibly contributing to nutrient cycling in its environment.↵↵The unique combination of traits in Brevibacterium casei S18 positions it as a significant player in the microbial communities it inhabits, likely influencing both the biochemical dynamics and the overall health of its ecological niche. Further research could elucidate its specific interactions within microbial consortia and its potential applications in biotechnology or food production." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei Positive Aerobe 1229781 AMSP00000000.1 Bac0010487 Staphylococcus massiliensis S46 "Staphylococcus massiliensis S46 is a Gram-positive, non-spore-forming bacterium characterized by its spherical shape. This species thrives optimally at a temperature of 32.0 °C, suggesting a preference for mesophilic environments. As a member of the Staphylococcus genus, S. massiliensis is likely to exhibit the typical metabolic and physiological traits associated with this group, including the potential for fermentation of various substrates.↵↵The Gram-positive nature of S. massiliensis indicates a thick peptidoglycan layer in its cell wall, which is a hallmark of its structural integrity and can influence its ecological interactions. While this strain does not form spores, its resilience in the face of environmental stressors may derive from other cellular mechanisms, such as biofilm formation or the production of protective extracellular substances. ↵↵Understanding the growth conditions and morphological characteristics of S. massiliensis S46 can provide insight into its ecological niches, particularly in environments where similar mesophilic bacteria are prevalent. Given its optimal growth temperature, it may be adapted to colonize warm-blooded hosts or environments that mimic such conditions. This adaptability underscores the importance of studying microbial diversity and the roles these organisms may play in various ecosystems, particularly in relation to their interactions with other microbial communities." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus massiliensis Gram-positive sphere non-motile 32 mesophilic non-spore-forming 1229783 AMSQ00000000.1 Bac0010488 Stutzerimonas stutzeri B1SMN1 "Stutzerimonas stutzeri B1SMN1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a heterotroph, indicating that it derives its energy from organic compounds rather than photosynthesis or inorganic substances. Stutzerimonas stutzeri B1SMN1 requires oxygen for growth, categorizing it as an aerobe, which suggests that it thrives in environments where oxygen is readily available.↵↵This organism is host-associated, implying that it may inhabit specific niches within or on host organisms, though precise details regarding its host interactions are not provided. The combination of its aerobic metabolism and heterotrophic lifestyle may suggest a potential role in the decomposition of organic matter within the host environment, contributing to nutrient cycling.↵↵One notable aspect of Stutzerimonas stutzeri B1SMN1 is its adaptability to aerobic conditions, which may enhance its survival and functional capacity in diverse host-associated habitats. This adaptability could facilitate interactions with microbial communities and influence metabolic processes within the host, highlighting the importance of this bacterium in the context of microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 1212549 AMVM00000000.1 Bac0010489 Metamycoplasma alkalescens 14918 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma alkalescens 1188234 AMWK00000000.1 Bac0010490 Morganella morganii SC01 "Morganella morganii SC01 is a Gram-negative, facultative anaerobic bacterium. This versatile microbe can thrive in both aerobic and anaerobic environments, suggesting an adaptive metabolic flexibility that may allow it to occupy diverse ecological niches. As a member of the Enterobacteriaceae family, M. morganii is characterized by its rod-shaped morphology and the presence of a thin peptidoglycan layer typical of Gram-negative bacteria.↵↵The facultative anaerobic lifestyle of M. morganii SC01 indicates that it can utilize oxygen when available, but is also capable of fermentative metabolism in the absence of oxygen, which may enhance its survival in fluctuating environmental conditions. This trait could be particularly advantageous in environments where oxygen levels vary, allowing the organism to persist and potentially outcompete other microorganisms that are strictly aerobic or anaerobic.↵↵Furthermore, the metabolic versatility of Morganella morganii may contribute to its ecological interactions, particularly in decomposing organic matter where varying oxygen levels frequently occur. This adaptability not only underscores the organism's resilience but also suggests potential roles in nutrient cycling and ecosystem dynamics. Understanding the ecological significance of M. morganii SC01 could provide insights into its contributions to microbial communities in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Facultative anaerobe 1239989 AMWL00000000.2 Bac0010491 Thauera sp. 27 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera sp. 27 305700 AMXB00000000.1 Bac0010492 Thauera sp. 63 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera sp. 63 497321 AMXC00000000.1 Bac0010493 Thauera linaloolentis 47Lol = DSM 12138 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera linaloolentis aerobic 1123367 AMXE00000000.1 Bac0010494 Fulvivirga imtechensis AK7 "Fulvivirga imtechensis AK7 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microbe thrives optimally at a temperature of 32.0°C, suggesting a preference for moderate environmental conditions. The Gram-negative classification indicates a characteristic cell wall structure, which may influence its interactions within its environment, including its resistance to certain antibiotics and its overall ecological role.↵↵As an aerobic organism, Fulvivirga imtechensis AK7 likely relies on oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. This trait may limit its distribution to specific niches, such as oxygen-rich aquatic habitats or soil layers that are well-aerated.↵↵The non-sporulating nature of this bacterium implies that it may be vulnerable to environmental stressors, as it lacks the ability to form spores for survival under unfavorable conditions. Therefore, its survival and proliferation are likely contingent upon stable environmental factors, including temperature and oxygen availability.↵↵The presence of Fulvivirga imtechensis AK7 in particular habitats may contribute to biochemical cycles, such as nutrient degradation or organic matter turnover, highlighting its potential role in maintaining ecological balance. Further research could elucidate its specific contributions to microbial communities and its interactions within various ecosystems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Fulvivirga Fulvivirga imtechensis Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 1237149 AMZN00000000.1 Bac0010495 Acinetobacter sp. WC-323 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. WC-323 903918 AMZS00000000.1 Bac0010496 Mariniradius saccharolyticus AK6 "Mariniradius saccharolyticus AK6 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0°C. This organism is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and proliferation. The Gram-negative classification indicates the presence of a thin peptidoglycan layer and an outer membrane, which may play a role in its interactions with the surrounding environment, including nutrient uptake and potential resistance to certain antimicrobial agents.↵↵Given its aerobic requirement, Mariniradius saccharolyticus AK6 likely plays a role in oxygen-rich habitats, potentially contributing to organic matter degradation and nutrient cycling within its ecological niche. The optimal growth temperature suggests it may inhabit moderately warm environments, such as coastal waters or marine sediments, where other microbial communities flourish. Understanding the specific metabolic pathways and ecological roles of Mariniradius saccharolyticus AK6 could provide insights into its function in marine ecosystems, particularly in relation to sugar metabolism, as indicated by its species name ""saccharolyticus."" This aspect hints at the organism's potential role in the decomposition of organic materials, thereby influencing the dynamics of carbon cycling in marine environments." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Mariniradius Mariniradius saccharolyticus Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 1239962 AMZY00000000.2 Bac0010497 Ligilactobacillus saerimneri 30a Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus saerimneri 1227363 ANAG00000000.1 Bac0010498 Anaerovibrio sp. JC8 JC8_034 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Anaerovibrio Anaerovibrio sp. JC8 1240085 ANBM00000000.1 Bac0010499 Mycolicibacterium phlei DSM 43239 = CCUG 21000 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium phlei 1226750 ANBO00000000.1 Bac0010500 Streptococcus agalactiae FSL C1-487 "Streptococcus agalactiae FSL C1-487 is a Gram-positive coccus that typically forms chains or pairs. This bacterium exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, although it is optimally cultured at a temperature of 37.0°C, which aligns with the typical physiological temperature of its host. ↵↵As a member of the host-associated microbiota, S. agalactiae FSL C1-487 occupies niches within animal hosts, where it may play a role in maintaining microbial balance. Its ability to grow in varying oxygen conditions suggests a versatile adaptation to diverse microenvironments, which could influence its interactions within the host. ↵↵This strain of S. agalactiae underscores the importance of studying host-associated bacteria, as they can contribute to both the health and disease dynamics within the host organism. Understanding the traits of strains like FSL C1-487 may provide insights into their ecological roles and potential impacts on host microbiomes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1154771 ANCK00000000.1 Bac0010501 Grimontia indica strain AK16 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Grimontia Grimontia indica 1056512 ANFM00000000.2 Bac0010502 Caenispirillum salinarum AK4 "Caenispirillum salinarum AK4 is a Gram-negative, ovoid-shaped bacterium distinguished by its non-spore-forming nature. This microbe exhibits characteristics typical of many members within the diverse realm of halophilic microorganisms, suggesting an adaptation to saline environments. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that may confer certain advantages in osmoregulation and environmental resilience.↵↵The morphology of C. salinarum AK4, being ovoid in shape, may play a role in its survival strategies, potentially influencing its surface-to-volume ratio and interaction with its surroundings. Its non-sporulating characteristic suggests that this organism relies on other mechanisms for survival and adaptation to harsh environmental conditions, such as osmotic stress and nutrient fluctuations, rather than forming spores, which are typically resistant structures.↵↵Understanding the traits of C. salinarum AK4 contributes to our knowledge of microbial diversity and adaptation in hypersaline ecosystems. This organism may serve as a model for studying the biochemical pathways that facilitate life in extreme saline conditions, offering insights into the evolutionary mechanisms that enable microbial life to thrive in environments previously considered inhospitable. Further exploration of its metabolic capabilities and ecological roles will enhance our comprehension of microbial dynamics in saline habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Novispirillaceae Caenispirillum Caenispirillum salinarum Gram-negative ovoid non-spore-forming 1238182 ANHY00000000.1 Bac0010503 Kocuria palustris PEL "Kocuria palustris PEL is a Gram-positive, aerobic bacterium recognized for its potential utility in various biotechnological applications. This microbe thrives in oxygen-rich environments, where it engages in aerobic metabolism, reflecting its adaptation to such conditions. The Gram-positive nature of K. palustris PEL indicates the presence of a thick peptidoglycan layer in its cell wall, which is a characteristic feature of this group of bacteria. ↵↵While specific applications of Kocuria palustris PEL were not detailed, Gram-positive aerobic bacteria are often studied for their roles in bioremediation, fermentation processes, and as sources of bioactive compounds. The organism's ability to utilize oxygen for growth suggests potential benefits in environments where oxygen availability supports its metabolic pathways, possibly contributing to nutrient cycling in aquatic or semi-aquatic ecosystems.↵↵One intriguing aspect of Kocuria palustris PEL is its potential resilience in fluctuating environmental conditions, which may allow it to occupy niche habitats where competition with other microbes is less intense. This adaptability could make it a valuable player in the microbiomes of such ecosystems, where it may engage in synergistic interactions with other microbial communities, contributing to overall ecosystem functionality and health." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria palustris Positive Aerobe 1236550 ANHZ00000000.2 Bac0010504 Marinobacter nitratireducens strain AK21 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter nitratireducens 1137280 ANIE00000000.1 Bac0010505 Leptospira sp. serovar Kenya str. Sh9 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira sp. serovar Kenya 1242991 ANIG00000000.1 Bac0010506 Leptospira sp. B5-022 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira sp. B5-022 1242992 ANIJ00000000.1 Bac0010507 Lacticaseibacillus paracasei subsp. paracasei Lpp126 "Lacticaseibacillus paracasei subsp. paracasei Lpp126 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This organism thrives optimally at a temperature of 30.0°C, indicating its preference for moderately warm environments. L. paracasei subsp. paracasei Lpp126 is versatile in its habitat, being found across multiple environments, which suggests a degree of ecological plasticity that may allow it to adapt to various ecological niches.↵↵As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, which may provide it with a competitive advantage in diverse microbial communities. The ability to form chains may facilitate interactions with other microorganisms and contribute to its ecological role, potentially influencing fermentation processes or nutrient cycling in its habitat. Understanding the specific conditions that favor the growth and metabolic activities of L. paracasei subsp. paracasei Lpp126 may offer insights into its functional contributions within microbial ecosystems, particularly in environments rich in organic material where lactic acid bacteria are often predominant. This adaptability underscores the importance of L. paracasei subsp. paracasei Lpp126 in various ecological contexts, possibly influencing food production processes or gut microbiota composition in animals and humans." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1256206 ANKC00000000.1 Bac0010508 Glaesserella parasuis str. Nagasaki "Glaesserella parasuis str. Nagasaki is a Gram-negative, rod-shaped bacterium that is primarily host-associated, indicating its adaptation to living in close association with a host organism. This microbe exhibits both aerobic and facultative anaerobic oxygen requirements, allowing it to thrive in varying oxygen conditions within its host environment.↵↵As a member of the genus Glaesserella, this strain is recognized for its presence in the respiratory tract of pigs, where it may play a role in the complex microbial community associated with the host. The ability to grow in both aerobic and anaerobic conditions suggests that Glaesserella parasuis str. Nagasaki may possess metabolic versatility, enabling it to adapt to different niches within the host's body, such as the oxygen-rich environments of the upper respiratory tract or the more anoxic conditions found in deeper tissues or during inflammatory responses.↵↵The ecological significance of Glaesserella parasuis str. Nagasaki may extend beyond its role in host-associated communities, potentially influencing the balance of microbial populations and the health status of the host. Understanding its physiological traits and ecological interactions could provide insights into its role in the overall dynamics of the microbiome in pigs and inform strategies for managing associated health concerns in veterinary practice." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 1117322 ANKT00000000.1 Bac0010509 Amycolatopsis azurea DSM 43854 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis azurea 29 mesophilic spore-forming 1238180 ANMG00000000.1 Bac0010510 Lacticaseibacillus paracasei subsp. paracasei Lpp225 "Lacticaseibacillus paracasei subsp. paracasei Lpp225 is a Gram-positive, rod-shaped bacterium that typically forms chains and functions as a facultative anaerobe. This strain thrives at an optimal temperature of 30.0°C, indicating its adaptability to a range of environments. It is found in multiple habitats, which suggests a versatile ecological role.↵↵As a member of the genus Lacticaseibacillus, this microbe is likely involved in fermentation processes, contributing to the production of lactic acid, which has implications for food preservation and probiotic applications. The ability to grow in various conditions underscores its potential significance in diverse microbial ecosystems and its utility in biotechnological applications.↵↵Further investigation into its metabolic pathways and interactions with other microorganisms in its natural habitats could elucidate its role in microbial communities and its potential benefits in food science and health-related fields." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1256225 ANMM00000000.1 Bac0010511 Leptospira borgpetersenii serovar Hardjo-bovis str. Sponselee "Leptospira borgpetersenii serovar Hardjo-bovis str. Sponselee is a Gram-negative, nonsporulating bacterium characterized by its spiral shape and aerobic metabolism. This organism is part of the genus Leptospira, which is known for its distinctive morphology and ecological adaptations. The habitat of L. borgpetersenii serovar Hardjo-bovis str. Sponselee is primarily host-associated, indicating a close relationship with its biological hosts, which may include livestock such as cattle.↵↵As an aerobe, this strain requires oxygen for its metabolic processes, which influences its distribution and survival in various environments, particularly those associated with animal hosts. The unique spiral structure of Leptospira contributes to its motility, allowing it to navigate through viscous environments, such as those found in bodily fluids of its hosts.↵↵Understanding the traits of L. borgpetersenii serovar Hardjo-bovis str. Sponselee provides insights into its ecological niche and potential interactions with host organisms. The obligate association with hosts suggests a co-evolutionary relationship, where the bacterium may play a role in the microbiome of its hosts, potentially influencing their health and disease dynamics. Further research could elucidate the specific mechanisms of interaction between this bacterium and its host, providing deeper insights into its ecological significance within the context of animal health." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 1303729 ANMU00000000.1 Bac0010512 Leptospira sp. P2653 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira sp. P2653 1218600 ANMY00000000.1 Bac0010513 Campylobacter concisus UNSW3 "Campylobacter concisus UNSW3 is a Gram-negative bacterium characterized by its spirilla shape and ability to exist as both single cells and in chains. This microbe is classified as microaerophilic, indicating that it requires reduced levels of oxygen for optimal growth, which is consistent with its adaptation to host-associated habitats. ↵↵C. concisus UNSW3 is part of a genus known for its association with the gastrointestinal tract of various hosts, suggesting a potential role in the gut microbiome, although the specific ecological interactions and functions of this strain remain to be fully elucidated. Its unique morphological traits and oxygen requirements imply that C. concisus UNSW3 may occupy specific niches within the host environment, potentially influencing the microbial composition and metabolic processes of the gut ecosystem. Further research into its ecological roles and interactions could provide valuable insights into the dynamics of host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1242966 ANNE00000000.1 Bac0010514 Rhodopirellula europaea SH398 cSH3980213 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula europaea 1263866 ANOF00000000.1 Bac0010515 Rhodopirellula maiorica SM1 cSM11141 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Novipirellula Novipirellula maiorica 1265734 ANOG00000000.1 Bac0010516 Rhodopirellula sp. SWK7 cSWK70144 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula sp. SWK7 595460 ANOQ00000000.1 Bac0010517 Halobacillus sp. BAB-2008 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus sp. BAB-2008 1246484 ANPF00000000.1 Bac0010518 Haloferax sp. BAB-2207 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. BAB-2207 1296625 ANPG00000000.1 Bac0010519 Escherichia coli KTE10 "Escherichia coli KTE10 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is adapted to a host-associated habitat, indicating its prevalence in environments closely linked to living organisms. E. coli KTE10 thrives optimally at 37.0°C, which is notably the normal body temperature of warm-blooded animals, further supporting its association with host organisms. As a facultative anaerobe, E. coli KTE10 possesses the metabolic flexibility to survive in both aerobic and anaerobic conditions, allowing it to exploit various niches within the host environment.↵↵The capacity of E. coli KTE10 to inhabit host-associated environments reflects its potential role in microbial communities, where it may engage in symbiotic relationships or contribute to the overall microbial diversity. Its adaptability to varying oxygen levels suggests that it can effectively colonize diverse ecological niches within the host, where it may participate in metabolic processes that could influence host health and microbial dynamics. Understanding the traits of strains like E. coli KTE10 can provide insights into the broader ecological roles of bacteria within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1169330 ANSQ00000000.1 Bac0010520 Stutzerimonas stutzeri NF13 "Stutzerimonas stutzeri NF13 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells and is classified as a heterotrophic aerobe. This microbe is notably found in host-associated environments, indicating a potential symbiotic relationship with its host organisms. As a heterotroph, S. stutzeri NF13 relies on organic compounds for energy, which it likely acquires from its host or the surrounding environment.↵↵The aerobic nature of S. stutzeri NF13 suggests that it requires oxygen for its metabolic processes, which aligns with its habitat preference. This adaptation may play a crucial role in its survival and functionality within host-associated niches, where oxygen levels can vary depending on the host's physiological state and the microenvironment.↵↵The unique characteristics of S. stutzeri NF13, particularly its association with hosts and its aerobic metabolism, may contribute to its ecological role in nutrient cycling and microbial community dynamics. Understanding the specific interactions of this bacterium within its host environment could provide insights into its potential contributions to the host's health and metabolic processes, as well as its part in the broader microbial ecology. Further research could elucidate the specific mechanisms by which S. stutzeri NF13 interacts with its host, shedding light on its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 1212548 AOBS00000000.1 Bac0010521 Wohlfahrtiimonas chitiniclastica SH04 Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Ignatzschineriaceae Wohlfahrtiimonas Wohlfahrtiimonas chitiniclastica 1261130 AOBV00000000.1 Bac0010522 Streptococcus ratti FA-1 = DSM 20564 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus ratti microaerophile 699248 AOCD00000000.1 Bac0010523 Microcystis aeruginosa FACHB-905 = DIANCHI905 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 267865 AOCI00000000.1 Bac0010524 Listeria cornellensis FSL F6-0969 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria cornellensis 1265820 AODE00000000.1 Bac0010525 Listeria fleischmannii FSL S10-1203 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria fleischmannii 1265822 AODM00000000.1 Bac0010526 Rhodococcus triatomae BKS 15-14 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus triatomae 1278078 AODO00000000.1 Bac0010527 Cesiribacter andamanensis AMV16 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cesiribacteraceae Cesiribacter Cesiribacter andamanensis 1279009 AODQ00000000.1 Bac0010528 Pectobacterium peruviense strain UGC32 C27_001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium peruviense 2066479 AODU00000000.1 Bac0010529 Arthrobacter nitrophenolicus strain SJCon Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter nitrophenolicus 683150 AOFD00000000.1 Bac0010530 Leptospira vanthielii serovar Holland str. Waz Holland = ATCC "Leptospira vanthielii serovar Holland strain Waz Holland (ATCC) is a Gram-negative, aerobic bacterium characterized by its distinct curved or spiral shape. This species belongs to the genus Leptospira, which is well-known for its slender, motile spirochetes. As a member of this genus, L. vanthielii exhibits a unique morphology that is typical of spirochetes, allowing it to traverse various environments with a characteristic corkscrew motion.↵↵The aerobic nature of L. vanthielii suggests that it relies on oxygen for its metabolic processes, potentially influencing its habitat preferences and interactions with other microorganisms. This trait highlights its adaptation to environments where oxygen is available, which may include aquatic habitats or soils that are periodically saturated with water.↵↵Understanding the physiological traits of L. vanthielii can provide insights into its ecological role and interactions within microbial communities. The curved and spiral morphology, combined with its aerobic metabolism, may facilitate its survival in dynamic environments where it can efficiently exploit available resources and interact with other aerobic organisms. This characteristic also raises the possibility of exploring its potential in biotechnological applications, such as bioremediation in oxygen-rich aquatic ecosystems." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira vanthielii Gram-negative curved/spiral aerobic 293085 AOGY00000000.2 Bac0010531 Leptospira weilii serovar Ranarum str. ICFT Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira weilii 1218598 AOHC00000000.2 Bac0010532 Pseudomonas sp. FH1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FH1 1284392 AOHM00000000.1 Bac0010533 Amycolatopsis decaplanina DSM 44594 "Amycolatopsis decaplanina DSM 44594 is a Gram-positive bacterium that thrives under aerobic conditions, displaying optimal growth at a temperature of 29.0°C. This microbe is part of the diverse genus Amycolatopsis, which is known for its ability to produce a variety of bioactive secondary metabolites. The Gram-positive nature of A. decaplanina suggests a thick peptidoglycan layer in its cell wall, a characteristic that is often associated with increased resistance to environmental stresses and antibiotics compared to Gram-negative bacteria.↵↵As an aerobic organism, A. decaplanina relies on oxygen for its metabolic processes, which may influence its habitat preferences and interactions within microbial communities. The optimal growth temperature of 29.0°C indicates that this bacterium is likely adapted to moderate thermal environments, which could be relevant for its ecological niche in soil or decaying organic matter where such conditions are prevalent.↵↵The unique combination of traits exhibited by A. decaplanina, particularly its Gram-positive cell wall structure and aerobic metabolism, underscores its potential role in organic matter decomposition and nutrient cycling within its ecosystem. Additionally, the ability of this microbe to produce bioactive compounds may have implications for biotechnological applications, including antibiotic production and bioremediation strategies. Understanding the specific environmental and physiological contexts in which A. decaplanina operates could provide further insights into its ecological significance and biotechnological potential." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis decaplanina Gram-positive non-motile aerobic 29 mesophilic 1284240 AOHO00000000.1 Bac0010534 Streptomyces gancidicus BKS 13-15 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces pseudogriseolus 29 mesophilic spore-forming 1284664 AOHP00000000.1 Bac0010535 Natronorubrum sulfidifaciens JCM 14089 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum sulfidifaciens 1230460 AOHX00000000.1 Bac0010536 Natronorubrum bangense JCM 10635 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum bangense 1227500 AOHY00000000.1 Bac0010537 Natronococcus amylolyticus DSM 10524 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus amylolyticus 1227497 AOIB00000000.1 Bac0010538 Natrinema versiforme JCM 10478 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema versiforme 1227496 AOID00000000.1 Bac0010539 Natrinema pellirubrum DSM 15624 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema pellirubrum 797303 AOIE00000000.1 Bac0010540 Natrinema gari JCM 14663 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema gari 1230459 AOIJ00000000.1 Bac0010541 Natrinema altunense JCM 12890 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema altunense 1227494 AOIK00000000.1 Bac0010542 Natrialba hulunbeirensis JCM 10989 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba hulunbeirensis 1227493 AOIM00000000.1 Bac0010543 Natrialba aegyptia DSM 13077 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba aegyptia 1227491 AOIP00000000.1 Bac0010544 Halovivax asiaticus JCM 14624 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax asiaticus 1227490 AOIQ00000000.1 Bac0010545 Natrinema thermotolerans DSM 11552 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema thermotolerans 1227489 AOIR00000000.1 Bac0010546 Haloterrigena salina JCM 13891 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Haloterrigena Haloterrigena salina 1227488 AOIS00000000.1 Bac0010547 Natrinema limicola JCM 13563 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema limicola 1230457 AOIT00000000.1 Bac0010548 Halosimplex carlsbadense 2-9-1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex carlsbadense 797114 AOIU00000000.1 Bac0010549 Halorubrum litoreum JCM 13561 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum distributum 29283 AOJF00000000.1 Bac0010550 Halorubrum kocurii JCM 14978 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum kocurii 1230456 AOJH00000000.1 Bac0010551 Halorubrum aidingense JCM 13560 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum aidingense 1230454 AOJI00000000.1 Bac0010552 Halorubrum arcis JCM 13916 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum distributum 29283 AOJJ00000000.1 Bac0010553 Halorubrum coriense DSM 10284 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum coriense 1227466 AOJL00000000.1 Bac0010554 Fusobacterium necrophorum subsp. funduliforme B35 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum 1226633 AOJP00000000.1 Bac0010555 Haloferax prahovense DSM 18310 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax prahovense 1227461 AOLG00000000.1 Bac0010556 Haloferax volcanii DSM 14919 "Haloferax volcanii DSM 14919 is a rod-shaped, nonsporulating archaeon that exhibits chemoorganotrophic metabolism and requires oxygen for growth. This microorganism thrives in aquatic environments, where it utilizes organic compounds as an energy source. As an aerobe, H. volcanii DSM 14919 plays a significant role in biogeochemical cycles, particularly in the context of organic matter degradation and nutrient recycling within its aquatic habitat.↵↵The ability of H. volcanii DSM 14919 to metabolize various organic substrates highlights its ecological significance in the microbial communities of saline and hypersaline environments, such as salt lakes and brines. Its adaptation to oxygen-rich conditions suggests that it may contribute to the overall productivity and diversity of microbial life in such ecosystems. ↵↵Furthermore, studies on H. volcanii DSM 14919 can provide insights into the metabolic pathways of halophilic archaea and their potential applications in biotechnology, particularly in processes involving bioremediation and bioenergy production. The unique combination of traits exhibited by this organism underscores its potential as a model for understanding the ecological roles of extremophiles in aquatic systems." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii Rod No 1 1 Aerobe Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating 1230452 AOLH00000000.1 Bac0010557 Haloferax larsenii JCM 13917 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax larsenii 1227460 AOLI00000000.1 Bac0010558 Haloferax elongans ATCC BAA-1513 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax elongans 1230453 AOLK00000000.1 Bac0010559 Haloferax volcanii JCM 10717 "Haloferax volcanii JCM 10717 is a rod-shaped archaeon that exhibits chemoorganotrophic metabolism and thrives in aquatic environments. This organism is characterized by its aerobic respiration, requiring oxygen for growth and energy production. Unlike some other microorganisms, H. volcanii JCM 10717 does not form spores, which may influence its survival strategies in fluctuating environmental conditions.↵↵The habitat of H. volcanii JCM 10717 suggests a potential adaptability to saline aquatic environments, a common characteristic among halophilic archaea. The organism's ability to utilize organic compounds as an energy source aligns with its classification as a chemoorganotroph, indicating that it can derive energy from the breakdown of organic materials, which could play a significant role in nutrient cycling within its ecosystem.↵↵Given its specific traits, Haloferax volcanii JCM 10717 may contribute to the ecological dynamics of its aquatic habitat by participating in the degradation of organic matter and influencing the overall microbial community structure. Its aerobic metabolism may also play a role in the biogeochemical processes of oxygen dynamics in saline waters, highlighting the importance of such microorganisms in maintaining ecological balance in their environments." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii Rod No 1 1 Aerobe Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating 1227458 AOLL00000000.1 Bac0010560 Haloferax sulfurifontis ATCC BAA-897 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sulfurifontis 662480 AOLM00000000.1 Bac0010561 Haloferax mucosum ATCC BAA-1512 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax mucosum 662479 AOLN00000000.1 Bac0010562 Haloferax denitrificans ATCC 35960 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax denitrificans 662478 AOLP00000000.1 Bac0010563 Haloarcula vallismortis ATCC 29715 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula vallismortis 662477 AOLQ00000000.1 Bac0010564 Haloarcula californiae ATCC 33799 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula marismortui No 1 Aerobe 40 Chemoorganotroph Mesophilic Aquatic Free living Singles 2238 AOLS00000000.1 Bac0010565 Haloarcula argentinensis DSM 12282 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula argentinensis 1230451 AOLX00000000.1 Bac0010566 Halobiforma lacisalsi AJ5 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobacterium Natronobacterium lacisalsi 229731 AOLZ00000000.1 Bac0010567 Halococcus salifodinae DSM 8989 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus salifodinae 1227456 AOME00000000.1 Bac0010568 Halococcus thailandensis JCM 13552 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus thailandensis 1227457 AOMF00000000.1 Bac0010569 Nitrincola nitratireducens strain AK23 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Nitrincola Nitrincola nitratireducens 1229521 AONB00000000.1 Bac0010570 Roseovarius mucosus DSM 17069 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius mucosus 1288298 AONH00000000.1 Bac0010571 Paramagnetospirillum caucaseum strain SO-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Magnetospirillaceae Paramagnetospirillum Paramagnetospirillum caucaseum 1244869 AONQ00000000.1 Bac0010572 Vibrio parahaemolyticus VP766 99 "Vibrio parahaemolyticus VP766 99 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells. This strain does not exhibit sporulation and is categorized as a facultative anaerobe, allowing it to thrive in varying oxygen conditions. As a heterotroph, VP766 99 derives its energy from organic compounds found in its aquatic habitat, which may include estuaries, coastal waters, and other marine environments. ↵↵The optimal growth temperature for Vibrio parahaemolyticus VP766 99 is around 20.0°C, suggesting a preference for cooler aquatic conditions, which may influence its distribution and ecological role in marine ecosystems. The nonsporulating nature of this strain indicates that it relies on other survival mechanisms in response to environmental stressors, such as changes in temperature or salinity. ↵↵Given its aquatic habitat and metabolic characteristics, Vibrio parahaemolyticus VP766 99 may play a significant role in nutrient cycling and organic matter decomposition within its ecosystem. This highlights the importance of understanding this microbe's ecological interactions and potential contributions to the health of marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 AOOW00000000.1 Bac0010573 Streptomyces aurantiacus JA 4570 Seq568 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces aurantiacus 29 mesophilic 47760 AOPZ00000000.1 Bac0010574 Brachybacterium muris UCD-AY4 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium muris microaerophile 1249481 AORC00000000.1 Bac0010575 Mycoplasmopsis bovigenitalium 51080 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovigenitalium 1188235 AORH00000000.1 Bac0010576 Streptococcus oralis subsp. tigurinus AZ_3a "Streptococcus oralis subsp. tigurinus AZ_3a is a Gram-positive coccus that typically exhibits a cell arrangement of pairs and chains. This microbe is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. As a host-associated organism, S. oralis subsp. tigurinus AZ_3a is primarily found in the oral cavity, where it plays a role in the complex microbial community associated with human hosts.↵↵The morphological characteristics of S. oralis subsp. tigurinus AZ_3a, including its cocci shape and chain formation, suggest a potential for intercellular communication and cooperation, which is often seen in streptococcal species. Such arrangements can facilitate the establishment of biofilms, contributing to the organism's adaptability and persistence in the oral microbiome. This adaptability may also reflect the strain's ability to respond to varying environmental conditions within the host, highlighting its ecological significance in maintaining oral health.↵↵Overall, the presence of S. oralis subsp. tigurinus AZ_3a in host-associated environments underscores the importance of understanding its role in the oral microbiome, particularly in relation to microbial interactions and the potential influence on host health and disease states." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1282664 AORU00000000.1 Bac0010577 Ruminiclostridium cellobioparum subsp. termitidis CT1112 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminiclostridium Ruminiclostridium cellobioparum anaerobic 1195236 AORV00000000.1 Bac0010578 Streptomyces mobaraensis NBRC 13819 = DSM 40847 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces mobaraensis 29 mesophilic spore-forming 1223523 AORZ00000000.1 Bac0010579 Thermoplasmatales archaeon SCGC AB-539-C06 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon SCGC AB-539-C06 1242690 AOSH00000000.1 Bac0010580 Thermoplasmatales archaeon SCGC AB-540-F20 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon SCGC AB-540-F20 1242866 AOSI00000000.1 Bac0010581 Microbacterium sp. UCD-TDU Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. UCD-TDU 1247714 AOSO00000000.1 Bac0010582 Cutibacterium granulosum DSM 20700 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium granulosum No 1 Chemoheterotroph Mesophilic Host epidermis Nonsporulating 1160719 AOSS00000000.1 Bac0010583 Campylobacter showae CC57C "Campylobacter showae CC57C is a Gram-negative, aerobic bacterium characterized by its unique morphological and metabolic traits. As a member of the Campylobacter genus, this microbe exhibits a helical shape, which is typical for many species within this group. The aerobic nature of C. showae CC57C indicates that it requires oxygen for growth, positioning it within environments where oxygen is readily available.↵↵The Gram-negative classification of C. showae CC57C suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interactions with the environment and host organisms. This structural characteristic is significant in understanding the bacterium's resistance to certain antibiotics and its overall survivability in various ecological niches.↵↵Given its traits, C. showae CC57C may be well-adapted to specific habitats where oxygen is present, potentially including microaerophilic environments or areas with fluctuating oxygen levels. The ecological implications of its aerobic metabolism could provide insights into its role in nutrient cycling, particularly in environments where aerobic degradation of organic matter is critical. Understanding the ecological context of C. showae CC57C can enhance our knowledge of microbial dynamics in various ecosystems, contributing to a broader comprehension of microbial ecology and evolution." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae Negative Aerobe 1073353 AOTD00000000.1 Bac0010584 Helicobacter pylori CCHI 33 "Helicobacter pylori CCHI 33 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives optimally at 37.0°C, which aligns with the physiological temperature of its host environments, indicating that it is well-adapted to living within the gastric niche of mammals. ↵↵As a host-associated microbe, H. pylori CCHI 33 plays a significant role in the complex microbial communities found in the gastrointestinal tract. Its microaerophilic nature suggests that it requires reduced oxygen levels for growth, which is consistent with the oxygen gradients present in the stomach. This adaptation allows H. pylori to occupy a unique ecological niche where it can interact with both the host and other microbial inhabitants of the gastrointestinal tract.↵↵The ability of H. pylori to maintain its viability and metabolic activity in the acidic environment of the stomach may provide insights into its ecological role in influencing gastric health and disease. Understanding H. pylori CCHI 33's specific adaptations and interactions within its host-associated habitat may further elucidate its potential contributions to the human microbiome and its relationship with various gastrointestinal conditions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1200325 AOTU00000000.1 Bac0010585 Helicobacter pylori Hp H-1 "Helicobacter pylori Hp H-1 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape, typically found as single cells. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as it resides within host environments, specifically the gastric mucosa of humans and other mammals. ↵↵H. pylori is known for its unique adaptation to the acidic environment of the stomach, where it plays a significant role in the gastrointestinal ecosystem. Its microaerophilic nature indicates a requirement for reduced oxygen levels, which is consistent with its colonization in the host's gastric environment, where oxygen concentration is lower compared to atmospheric levels. ↵↵The morphology and physiological characteristics of H. pylori Hp H-1 suggest an intricate relationship with its host, allowing it to navigate the challenges posed by the gastric acidity while influencing the local microbiome. Understanding these traits may provide insights into the ecological dynamics of gastric microbiota, particularly in how H. pylori interacts with other microbial species and the host's immune response." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 992058 AOTX00000000.1 Bac0010586 Leptospira noguchii str. Cascata Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira noguchii 1193054 AOUB00000000.1 Bac0010587 Sphingopyxis sp. MC1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. MC1 1174684 AOUN00000000.1 Bac0010588 Amycolatopsis vancoresmycina DSM 44592 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis vancoresmycina 29 mesophilic 1292037 AOUO00000000.1 Bac0010589 Salmonella enterica subsp. enterica serovar Muenchen str. baa1594 "Salmonella enterica subsp. enterica serovar Muenchen str. baa1594 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This strain is a chemoorganotroph, meaning it derives energy from organic compounds, and is classified as microaerophilic, requiring reduced levels of oxygen for optimal growth. The optimal growth temperature for this strain is approximately 37.0°C, aligning with the typical temperature of mammalian hosts, suggesting an adaptation to a host-associated habitat.↵↵The microaerophilic nature of S. enterica serovar Muenchen str. baa1594 indicates that it thrives in environments where oxygen levels are lower than those found in the atmosphere, which is often the case in the gastrointestinal tracts of animals. This trait may facilitate its survival and proliferation within host organisms. The ability to form chains could be advantageous for colonization, potentially aiding in the establishment of biofilms or clusters within the host environment. ↵↵Overall, the ecological niche of this strain within host-associated habitats reflects its evolutionary adaptations to survive and exploit the resources available in such environments, highlighting its role in the complex interactions between microorganisms and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1079477 AOYV00000000.1 Bac0010590 Pseudomonas putida NBRC 14164 "Pseudomonas putida NBRC 14164 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microorganism is classified as a heterotroph, utilizing organic compounds as its energy source. It predominantly inhabits soil and wastewater environments, where it plays a vital role in the degradation of various organic pollutants. Pseudomonas putida NBRC 14164 is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic conditions, which enhances its adaptability to fluctuating environmental oxygen levels.↵↵The metabolic versatility of Pseudomonas putida NBRC 14164, particularly its ability to degrade complex organic materials, positions it as a significant player in bioremediation processes. This trait is particularly beneficial in wastewater treatment facilities, where the bacterium can contribute to the breakdown of contaminants and improve water quality. The ecological implications of its presence in soil and wastewater environments suggest that Pseudomonas putida NBRC 14164 not only participates in nutrient cycling but may also influence the microbial community structure through its metabolic activities. Its unique capabilities underline the importance of this strain in environmental microbiology and biotechnology, particularly in efforts to harness microbial processes for ecological restoration and pollution management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 1211579 AP013070.1 Bac0010591 Cylindrospermum sp. NIES-4074 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Cylindrospermum Cylindrospermum sp. NIES-4074 2005457 AP018270.1 Bac0010592 Lactobacillus curvatus NFH-Km12 "Lactobacillus curvatus NFH-Km12 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This microbe is frequently found in diverse fermented environments, including pickled carrots with rice bran and salt, various dairy products, kimchi, and other fermented plant and meat products, as well as radishes pickled in a similar manner.↵↵The ability of L. curvatus NFH-Km12 to thrive in both aerobic and anaerobic conditions suggests a versatile metabolic capacity, allowing it to adapt to the varying oxygen levels typically encountered in fermentation processes. This adaptability may contribute to its presence in a wide array of fermented foods, where it likely plays a role in the development of flavor and preservation, potentially through the production of lactic acid and other metabolites.↵↵The ecological significance of L. curvatus NFH-Km12 may extend beyond its fermentation capabilities; its presence in a variety of fermented products indicates potential interactions with other microorganisms in these environments. Such interactions could influence the overall microbial community dynamics, impacting fermentation outcomes and the sensory properties of the final products. Further studies could elucidate the specific contributions of L. curvatus NFH-Km12 to food fermentation and its potential benefits in promoting the health of gut microbiota through the consumption of fermented foods." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 AP018701.1 Bac0010593 Escherichia coli O8:H8 16F5M1D1 "Escherichia coli O8:H8 16F5M1D1 is a Gram-negative, rod-shaped bacterium characterized by its solitary cell arrangement and heterotrophic metabolism, utilizing a variety of organic compounds as energy sources. As an aerobic organism, it requires oxygen for growth and thrives in diverse habitats, which may include soil, water, and the gastrointestinal tracts of animals. ↵↵The adaptation of E. coli O8:H8 16F5M1D1 to multiple environments highlights its ecological versatility, allowing it to occupy various niches and interact with different microbial communities. This adaptability contributes to the bacterium's significance in both natural ecosystems and as a model organism in microbiological research. Understanding the traits and ecological roles of such strains can further elucidate their contributions to nutrient cycling and microbial dynamics in their respective habitats." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles AP019857 Bac0010594 Burkholderia pseudomallei GTC3P0254T "Burkholderia pseudomallei GTC3P0254T is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolism. This strain is part of a genus known for its environmental versatility, found in diverse ecological niches, particularly in soil and water. As an aerobic organism, B. pseudomallei GTC3P0254T relies on oxygen for its growth and sustenance, which is indicative of its adaptation to environments where oxygen is readily available.↵↵The Gram-negative characteristic of B. pseudomallei GTC3P0254T suggests a complex cell wall structure, featuring an outer membrane that can confer resistance to certain antibiotics and environmental stresses. This structural feature may play a role in its survival and competitiveness within its terrestrial habitat.↵↵Understanding the ecological role of Burkholderia pseudomallei GTC3P0254T can offer insights into its interactions with other soil microbes and its potential impact on nutrient cycling within terrestrial ecosystems. Further investigation into its metabolic capabilities and interactions with the surrounding microbiota could elucidate its role in soil health and ecosystem dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 28450 AP028078.1 Bac0010595 Marinobacter santoriniensis NKSG1 "Marinobacter santoriniensis NKSG1 is a Gram-negative, rod-shaped bacterium that thrives optimally at 37.0°C and exhibits facultative aerobic and anaerobic growth capabilities. This organism is characterized by its non-spore-forming nature, which suggests it relies on other survival strategies in fluctuating environmental conditions. ↵↵The facultative nature of M. santoriniensis NKSG1 implies that it can adapt to both oxygen-rich and oxygen-poor environments, potentially allowing it to inhabit diverse ecological niches. This adaptability may play a crucial role in its survival and metabolic versatility in various marine settings. Given its optimal growth temperature, M. santoriniensis NKSG1 may be particularly well-suited to environments that approximate human body temperature, which could have implications for its interactions within marine ecosystems or biotechnological applications involving temperature-sensitive processes. Such characteristics highlight the potential of M. santoriniensis NKSG1 in understanding microbial dynamics in marine environments and its utility in bioremediation or other applications where microbial adaptability is beneficial." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter santoriniensis Gram-negative rod motile facultative aerobe/anaerobe 37 mesophilic non-spore-forming 1288826 APAT00000000.1 Bac0010596 Brevibacillus borstelensis AK1 seq_num_029 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus borstelensis aerobic 45462 APBN00000000.1 Bac0010597 Glaesserella parasuis D74 "Glaesserella parasuis D74 is a Gram-negative, rod-shaped bacterium that is primarily associated with host environments. This microbe exhibits both aerobic and facultative anaerobic growth capabilities, which allows it to thrive in varying oxygen levels within its host-associated habitat. Known for its relevance in veterinary microbiology, particularly in swine, G. parasuis is closely linked to respiratory diseases in pigs, although specific pathogenic mechanisms and host interactions are not fully elucidated.↵↵The ability of G. parasuis D74 to adapt to different oxygen conditions may contribute to its survival and persistence within the host, suggesting a degree of metabolic versatility. This adaptability might also facilitate its interaction with the host's immune system, allowing it to occupy niches that are otherwise hostile to less versatile microorganisms. Understanding these traits not only sheds light on the bacterium's biology but also provides insights into the complexities of host-microbe interactions in the swine respiratory tract. Further research is warranted to explore the implications of these traits on its ecological role and potential impacts on swine health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 1275971 APBZ00000000.1 Bac0010598 Agrobacterium tumefaciens str. Cherry 2E-2-2 "Agrobacterium tumefaciens str. Cherry 2E-2-2 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This strain is an aerobic organism, indicating its reliance on oxygen for respiration, which aligns with its ecological versatility as it is found in multiple habitats. ↵↵The rod shape and Gram-negative classification suggest that A. tumefaciens str. Cherry 2E-2-2 possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of its genus and contributing to its adaptability in various environments. This adaptability may facilitate its survival in diverse ecological niches, potentially allowing it to engage in complex interactions with plants and other microorganisms. ↵↵Understanding the traits of A. tumefaciens str. Cherry 2E-2-2 can provide insights into its role in soil ecosystems, where its metabolic versatility may influence nutrient cycling and plant health. This bacterium's ability to thrive in multiple habitats underscores its ecological significance and potential as a model organism for studying plant-microbe interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1281779 APCC00000000.1 Bac0010599 Helicobacter pylori GAMchJs124i "Helicobacter pylori GAMchJs124i is a Gram-negative microbe characterized by its spirilla shape and presence as singular cells. This organism thrives in host-associated habitats, indicating its reliance on specific biological environments for survival and growth. H. pylori GAMchJs124i exhibits a microaerophilic oxygen requirement, suggesting that it requires reduced levels of oxygen for optimal metabolic processes. The optimal growth temperature for this strain is approximately 37.0°C, aligning with the typical physiological conditions found within the mammalian stomach.↵↵As a member of the Helicobacter genus, H. pylori GAMchJs124i may be involved in complex interactions within its host, particularly in relation to the gastric environment. Its adaptation to microaerophilic conditions is indicative of its specialized niche, where it may play roles in influencing local pH and microbiota composition. This adaptation also reflects potential metabolic pathways that are distinct to the Helicobacter species, offering insights into their evolutionary strategies for colonization in host environments. Understanding the specific ecological role and metabolic capabilities of H. pylori GAMchJs124i could deepen our knowledge of host-microbe interactions and the dynamics of microbial communities in the gastric niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1159062 APEL00000000.1 Bac0010600 Corynebacterium glutamicum ZL-2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum 1304280 APJJ00000000.1 Bac0010601 Curtobacterium flaccumfaciens UCD-AKU "Curtobacterium flaccumfaciens UCD-AKU is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. This microbe is part of the Curtobacterium genus, which is recognized for its diverse metabolic capabilities and ecological versatility. The Gram-positive nature of C. flaccumfaciens UCD-AKU indicates that it possesses a thick peptidoglycan layer in its cell wall, a feature that is often associated with increased resilience to environmental stresses compared to Gram-negative bacteria.↵↵As an aerobic organism, C. flaccumfaciens UCD-AKU requires oxygen for its metabolic processes, which may influence its distribution and activity in various habitats. This requirement underscores the potential role of oxygen availability in shaping its ecological niche and interactions with other microorganisms. The aerobic lifestyle may also suggest that this bacterium participates in specific biogeochemical cycles, particularly those related to aerobic decomposition processes in soil or plant-associated environments.↵↵Further investigation into the ecological functions of C. flaccumfaciens UCD-AKU could provide insights into its role in nutrient cycling or its interactions with plant hosts, which are common habitats for members of the Curtobacterium genus. Understanding these dynamics could enhance our comprehension of microbial community structure and function in aerobic ecosystems, particularly in agricultural settings where this microbe may be prevalent." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium flaccumfaciens Positive Aerobe 1292022 APJN00000000.1 Bac0010602 Clostridium tetanomorphum DSM 665 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tetanomorphum anaerobic 1230342 APJS00000000.1 Bac0010603 Candidatus Nanobsidianus stetteri Nst1_C7 Nanobdellati Nanobdellota Candidatus Nanoarchaeia Nanoarchaeales Nanopusillaceae Candidatus Nanobsidianus Candidatus Nanobsidianus stetteri 1294122 APJZ00000000.1 Bac0010604 Pseudoalteromonas agarivorans S816 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas agarivorans 1307437 APME00000000.1 Bac0010605 Methanocaldococcus villosus KIN24-T80 Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus 1069083 APMM00000000.1 Bac0010606 Rhodococcus rhodnii LMG 5362 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus rhodnii 29 mesophilic spore-forming 1273125 APMY00000000.1 Bac0010607 Acinetobacter modestus strain NIPH 236 "Acinetobacter modestus strain NIPH 236 is a Gram-negative, spherical bacterium that exhibits aerobic metabolism. As a member of the genus Acinetobacter, this strain is characterized by its ability to thrive in oxygen-rich environments, indicating a preference for aerobic respiration as a means of energy production. ↵↵The spherical morphology of A. modestus NIPH 236 contributes to its classification within the broader family of cocci, which are distinguished by their rounded shape. This structural trait can influence the bacterium's interactions with its environment, including its potential role in biofilm formation and surface adhesion, characteristics often associated with members of the Acinetobacter genus.↵↵While specific information regarding the strain's ecological niche or interactions with other microorganisms is not provided, the ability of A. modestus to grow in aerobic conditions suggests potential adaptability to various environments, including soil or water ecosystems where oxygen is available. This adaptability may allow the strain to participate in nutrient cycling or other ecological functions. ↵↵Overall, the traits of Acinetobacter modestus strain NIPH 236 highlight the organism's physiological capabilities, but further research is necessary to fully elucidate its ecological roles and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter modestus Gram-negative sphere aerobic 1776740 APOJ00000000.1 Bac0010608 Acinetobacter sp. ANC 3789 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 3789 469 APOY00000000.1 Bac0010609 Acinetobacter sp. CIP 102159 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 102159 1144667 APOZ00000000.1 Bac0010610 Acinetobacter sp. CIP 102529 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 102529 1144668 APPB00000000.1 Bac0010611 Acinetobacter vivianii strain NIPH 758 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter vivianii 1776742 APPC00000000.1 Bac0010612 Acinetobacter sp. CIP 102082 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 102082 1144663 APPD00000000.1 Bac0010613 Acinetobacter variabilis strain NIPH 899 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter variabilis 70346 APPE00000000.1 Bac0010614 Acinetobacter sp. CIP 102637 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 102637 1144669 APPG00000000.1 Bac0010615 Acinetobacter higginsii strain CIP 56.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter higginsii 70347 APPH00000000.1 Bac0010616 Acinetobacter schindleri NIPH 900 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter schindleri 1217675 APPI00000000.1 Bac0010617 Acinetobacter baumannii NIPH 190 "Acinetobacter baumannii NIPH 190 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to mammalian hosts or environments with similar thermal conditions. As a chemoheterotrophic aerobe, A. baumannii NIPH 190 relies on organic compounds for energy and requires oxygen for its metabolic processes, highlighting its role in environments where organic matter is available and oxygen is present.↵↵The habitat of A. baumannii NIPH 190 is noted to be diverse, indicating its potential adaptability to various ecological niches. This versatility may enable the bacterium to inhabit environments ranging from soil and water to clinical settings, where it has been frequently isolated. The ability to thrive in multiple habitats underscores its ecological plasticity and suggests a potential role in biogeochemical cycles, possibly influencing nutrient dynamics in its surroundings. ↵↵Overall, the traits of A. baumannii NIPH 190 reflect an organism well-suited for survival in varied ecosystems, reinforcing the importance of understanding its ecological interactions and metabolic capabilities in relation to environmental changes and human activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1217640 APPL00000000.1 Bac0010618 Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter gerneri 1120926 APPN00000000.1 Bac0010619 Acinetobacter nosocomialis NIPH 386 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter nosocomialis 1217985 APPP00000000.1 Bac0010620 Acinetobacter towneri DSM 14962 = CIP 107472 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter towneri aerobic 1120929 APPY00000000.1 Bac0010621 Acinetobacter johnsonii ANC 3681 "Acinetobacter johnsonii ANC 3681 is a Gram-negative, aerobic bacterium that exhibits a range of notable traits relevant to its classification and potential applications. As a member of the genus Acinetobacter, this species is characterized by its ability to thrive in oxygen-rich environments, indicating an adaptation to aerobic conditions. The Gram-negative nature of A. johnsonii ANC 3681 suggests a complex cellular structure, including an outer membrane that may play a role in resistance to certain antibiotics and environmental stresses.↵↵The physiological properties of A. johnsonii ANC 3681 position it within microbial communities where oxygen is readily available, potentially contributing to biogeochemical cycles or influencing microbial diversity in various habitats. The bacterium's aerobic metabolism may enable it to utilize a variety of organic compounds as carbon sources, which could facilitate its survival and proliferation in diverse ecological niches.↵↵Furthermore, the presence of Acinetobacter species in various environments, including soil and water, underscores their ecological significance. A. johnsonii ANC 3681 may play a role in nutrient cycling or interact with other microorganisms, influencing community dynamics. Understanding the specific metabolic capabilities and ecological relationships of A. johnsonii ANC 3681 could provide insights into its potential uses in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe 1217662 APPZ00000000.1 Bac0010622 Acinetobacter ursingii NIPH 706 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter ursingii 1217716 APQB00000000.1 Bac0010623 Acinetobacter ursingii ANC 3649 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter ursingii 1257043 APQC00000000.1 Bac0010624 Acinetobacter bouvetii DSM 14964 = CIP 107468 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bouvetii 1120925 APQD00000000.1 Bac0010625 Acinetobacter bereziniae LMG 1003 = CIP 70.12 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bereziniae 981324 APQG00000000.1 Bac0010626 Acinetobacter calcoaceticus ANC 3680 "Acinetobacter calcoaceticus ANC 3680 is a Gram-negative, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. This microbe is part of the Acinetobacter genus, which is known for its metabolic versatility and adaptability to various ecological niches. As an aerobe, A. calcoaceticus ANC 3680 requires oxygen for growth and energy production, utilizing aerobic respiration pathways to metabolize substrates.↵↵The morphology of A. calcoaceticus ANC 3680 typically presents as short, non-motile rods, a trait common to many species within the Acinetobacter genus. This bacterium's Gram-negative cell wall structure, featuring a thin peptidoglycan layer surrounded by an outer membrane, contributes to its resilience against certain environmental stresses and biocides.↵↵Acinetobacter species, including A. calcoaceticus, are recognized for their environmental adaptability, often found in soil and water, where they play a role in nutrient cycling. A. calcoaceticus ANC 3680, in particular, may contribute to the degradation of organic compounds, indicating its potential utility in bioremediation processes. Furthermore, its aerobic nature suggests a significant role in influencing the dynamics of microbial communities in oxygen-rich environments, highlighting its ecological importance in maintaining ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus Negative Aerobe 1217653 APQH00000000.1 Bac0010627 Acinetobacter pittii ANC 4050 "Acinetobacter pittii ANC 4050 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in a variety of habitats. This species exhibits an optimal growth temperature of 37.0°C, which aligns with the physiological conditions often found in human-associated environments. As a chemoheterotroph, A. pittii ANC 4050 relies on organic compounds for energy, indicating its adaptability to diverse ecological niches where such resources are available.↵↵The aerobic nature of A. pittii ANC 4050 suggests that it requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen is present. Its ability to survive in multiple habitats underscores its ecological versatility and potential role in various microbial communities. This adaptability may allow A. pittii ANC 4050 to participate in nutrient cycling and interact with other microorganisms, contributing to the overall dynamics of the ecosystems it inhabits. Understanding the ecological roles of such bacteria is crucial for elucidating their impact on environmental microbiology and potential interactions with other biotic and abiotic factors in their habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1217691 APQM00000000.1 Bac0010628 Acinetobacter lactucae strain ANC 4052 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lactucae 1785128 APQO00000000.1 Bac0010629 Acinetobacter haemolyticus NIPH 261 "Acinetobacter haemolyticus NIPH 261 is a Gram-negative, aerobic bacterium recognized for its ability to thrive in oxygen-rich environments. This microbial species is part of the genus Acinetobacter, which is known for its metabolic versatility and resilience in various ecological niches. The Gram-negative classification indicates that A. haemolyticus possesses a distinctive cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which may contribute to its survival in diverse conditions.↵↵As an aerobic organism, A. haemolyticus NIPH 261 requires oxygen for its growth and energy production, positioning it within environments where oxygen is readily available. This requirement may influence its habitat preferences and interactions with other microbial species, potentially affecting community dynamics in its ecological niche. The adaptability of A. haemolyticus to aerobic conditions suggests potential roles in biogeochemical cycles, particularly in environments where organic matter decomposition occurs in the presence of oxygen.↵↵Understanding the traits of Acinetobacter haemolyticus NIPH 261 may provide insights into its ecological role and functional capacity within microbial communities. Its ability to thrive aerobically could indicate its involvement in the degradation of organic pollutants or its utility in bioremediation efforts in contaminated environments, where oxygen availability is not a limiting factor." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 1217986 APQR00000000.1 Bac0010630 Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512 "Acinetobacter lwoffii NCTC 5866 (also known as CIP 64.10 and NIPH 512) is a Gram-negative, aerobic bacterium characterized by its metabolic versatility and resilience in various environments. This species belongs to the genus Acinetobacter, which is known for its ability to survive in harsh conditions, including desiccation and the presence of disinfectants. ↵↵As an obligate aerobe, A. lwoffii requires oxygen for its metabolic processes, utilizing aerobic respiration to generate energy. This trait allows it to thrive in oxygen-rich environments and potentially contributes to its adaptability in both natural and artificial habitats, such as soil, water, and surfaces in healthcare settings. ↵↵The strain NCTC 5866 has been utilized in microbiological studies to better understand the ecological roles and biochemical pathways of Acinetobacter species, particularly in relation to their environmental survival mechanisms. This research is crucial, as it may provide insights into the role of A. lwoffii in biogeochemical cycles and its interactions with other microorganisms in diverse ecosystems.↵↵Notably, the ability of A. lwoffii to persist in various environments may reflect its potential utility in bioremediation efforts, where it could play a role in the degradation of pollutants or in the maintenance of microbial diversity in disturbed habitats. Further studies are necessary to elucidate the specific ecological functions of this strain and its interactions within complex microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Aerobe 981327 APQS00000000.1 Bac0010631 Acinetobacter baumannii NIPH 80 "Acinetobacter baumannii NIPH 80 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is a chemoheterotroph, utilizing organic compounds as its energy source, and it requires aerobic conditions for growth. Optimal growth for A. baumannii NIPH 80 occurs at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting a possible association with warm-blooded hosts or environments.↵↵The habitat of A. baumannii NIPH 80 is diverse, indicating its ability to thrive in multiple ecological niches. This versatility may contribute to its resilience in various environments, including hospital settings, where it is often encountered. Given its characteristics as an aerobic organism and its heterotrophic lifestyle, A. baumannii NIPH 80 may play a role in nutrient cycling within its habitats, potentially influencing microbial community dynamics.↵↵Furthermore, the ability of A. baumannii NIPH 80 to adapt to various environments highlights its ecological significance and suggests potential interactions with other microbial species. This adaptability may also pose challenges in clinical settings, underscoring the importance of understanding its biological and ecological traits for effective management and control measures." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1217629 APRE00000000.1 Bac0010632 Acinetobacter sp. NIPH 284 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. NIPH 284 1217704 APRI00000000.1 Bac0010633 Acinetobacter dispersus strain ANC 4105 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter dispersus 70348 APRL00000000.1 Bac0010634 Acinetobacter sp. CIP 101934 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 101934 1144661 APRQ00000000.1 Bac0010635 Acinetobacter courvalinii strain NIPH 1847 "Acinetobacter courvalinii strain NIPH 1847 is a Gram-negative, nonsporulating bacterium characterized as a chemoheterotroph. This strain exhibits typical features of the Acinetobacter genus, known for its metabolic versatility and ability to utilize various organic compounds as energy sources. As a nonsporulating organism, A. courvalinii strain NIPH 1847 lacks the capacity to form spores, which may influence its survival strategies in various environments.↵↵The classification of A. courvalinii as a chemoheterotroph indicates its reliance on organic molecules for both carbon and energy, distinguishing it from autotrophic organisms that harness inorganic substances or sunlight. Such metabolic traits suggest that A. courvalinii could play a role in organic matter decomposition in its natural habitat, contributing to nutrient cycling within its ecosystem.↵↵Further research into the ecological interactions and environmental conditions favoring the growth of A. courvalinii strain NIPH 1847 would enhance the understanding of its role within microbial communities. This insight is particularly relevant in contexts such as bioremediation or soil health, where the metabolic capabilities of bacteria like A. courvalinii could help in the breakdown of pollutants or contribute to soil fertility." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter courvalinii Negative No 1 Chemoheterotroph Mesophilic Nonsporulating 280147 APRR00000000.1 Bac0010636 Acinetobacter sp. CIP 64.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 64.2 1217694 APRT00000000.1 Bac0010637 Acinetobacter sp. CIP 51.11 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 51.11 1144670 APRU00000000.1 Bac0010638 Acinetobacter sp. CIP 102136 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 102136 1144665 APRV00000000.1 Bac0010639 Acinetobacter sp. NIPH 542 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. NIPH 542 1217688 APSC00000000.1 Bac0010640 Acinetobacter higginsii strain ANC 3880 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter higginsii 70347 APSD00000000.1 Bac0010641 Acinetobacter sp. CIP 102143 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. CIP 102143 1144666 APSE00000000.1 Bac0010642 Aeromonas diversa 2478-85 104 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas diversa 502790 APVG00000000.1 Bac0010643 Salipiger mucosus DSM 16094 "Salipiger mucosus DSM 16094 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0°C. This microbe is part of a broader group of bacteria that exhibit notable adaptations to various environmental conditions, particularly those found in aquatic habitats. ↵↵The Gram-negative characteristic of Salipiger mucosus indicates a thin peptidoglycan layer surrounded by an outer membrane, typical of this category, which may influence its interactions with surrounding microorganisms and its resilience in diverse ecological niches. The rod shape of the bacterium facilitates motility and colonization, potentially allowing it to occupy specific microhabitats within its environment.↵↵Given its optimal temperature, Salipiger mucosus may be particularly well-suited for ecosystems that experience mild to warm temperatures, such as coastal regions or shallow marine environments. The aerobic nature of this bacterium suggests it relies on oxygen for its metabolic processes, which may confer a competitive advantage in environments where oxygen is readily available.↵↵The adaptation of Salipiger mucosus to aerobic conditions and its thermal preferences may play a significant role in its ecological interactions, possibly influencing biogeochemical cycles within its habitat. Understanding the specific ecological functions of this bacterium could provide insights into the roles of microbial communities in nutrient cycling and organic matter decomposition in aquatic ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger mucosus Gram-negative rod non-motile aerobic 29 mesophilic 1123237 APVH00000000.1 Bac0010644 Cytobacillus firmus DS1 "Cytobacillus firmus DS1 is a rod-shaped, nonsporulating bacterium that operates as a chemoheterotroph, utilizing organic compounds for energy. This microbe thrives optimally at a temperature of 35.0°C, suggesting a preference for mesophilic environments. The ability to adapt to multiple habitats indicates a degree of ecological versatility, potentially allowing it to inhabit diverse niches where organic substrates are available.↵↵As a nonsporulating organism, Cytobacillus firmus DS1 may rely on alternative survival strategies to withstand unfavorable environmental conditions. This trait may confer advantages in stable environments where sporulation is not necessary for survival. The chemoheterotrophic lifestyle further emphasizes its role in nutrient cycling, as it likely contributes to the degradation of organic matter in its habitats. The adaptability of Cytobacillus firmus DS1 to various environments highlights its potential significance in microbial communities, particularly in processes such as organic matter decomposition and nutrient mobilization." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus firmus Rod No 1 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 1307436 APVL00000000.1 Bac0010645 Escherichia coli MP021561.2 "Escherichia coli MP021561.2 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, enabling it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for E. coli MP021561.2 is 37.0°C, which aligns with the physiological temperature of its host-associated habitat, suggesting a close relationship with warm-blooded organisms.↵↵As a member of the Escherichia genus, this strain may share metabolic and physiological characteristics typical of enteric bacteria, potentially influencing its role in the gut microbiota of its host. The facultative anaerobic nature of E. coli MP021561.2 allows it to adapt to varying oxygen levels within its habitat, which is often rich in nutrients and supports diverse microbial communities. This adaptability could play a significant role in its survival and proliferation within the host environment as well as in interactions with other microbial species.↵↵Understanding the traits of E. coli MP021561.2 highlights the importance of bacterial adaptability in host-associated ecosystems. This strain's ability to thrive under varying oxygen conditions may provide insights into its ecological role and interactions within the gut microbiome, where competition for resources and niche differentiation are critical for microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1116136 AQEV00000000.1 Bac0010646 Acinetobacter tandoii DSM 14970 = CIP 107469 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter tandoii 1120927 AQFM00000000.1 Bac0010647 Pseudomonas sp. HPB0071 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. HPB0071 1203578 AQFP00000000.1 Bac0010648 Lactobacillus intestinalis strain ASF360 C821_03 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus intestinalis 151781 AQFR00000000.2 Bac0010649 Helicobacter bilis WiWa "Helicobacter bilis WiWa is a Gram-negative, microaerophilic bacterium that has garnered interest due to its unique physiological traits. As a member of the Helicobacter genus, it is characterized by its spiral shape and motility, which are typical of many organisms in this group. The microaerophilic nature of H. bilis WiWa indicates that it thrives in environments with reduced oxygen levels, a trait that may influence its habitat and interactions within host organisms. ↵↵The Gram-negative classification of H. bilis WiWa suggests that it possesses a complex outer membrane structure, which includes an asymmetric bilayer composed of lipopolysaccharides and phospholipids. This structural feature may confer various advantages, such as resistance to certain antibiotics and a unique ability to navigate the host environment.↵↵While the specific ecological role and potential pathogenicity of H. bilis WiWa remain to be fully elucidated, its microaerophilic metabolism hints at a possible adaptation to specific niches within the gastrointestinal tract of hosts, where oxygen concentrations are relatively low compared to atmospheric levels. This adaptation may facilitate its survival and proliferation in the competitive microbial landscapes of such environments. Understanding the traits of H. bilis WiWa could provide insights into the broader ecological dynamics involving Helicobacter species and their interactions with host organisms and other microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter bilis Negative Microaerophile 1235804 AQFW00000000.1 Bac0010650 Pediococcus acidilactici D3 2195 "Pediococcus acidilactici D3 2195 is a nonsporulating, Gram-positive coccus belonging to the lactic acid bacteria group, characterized by its anaerobic metabolism and chemoheterotrophic energy source. This strain thrives optimally at a temperature of 30.0°C and can be found in various habitats, indicating its versatility in different environments. As an anaerobe, P. acidilactici D3 2195 relies on fermentation processes to generate energy, making it a significant contributor to the production of lactic acid and other metabolites in anaerobic conditions.↵↵The ability of P. acidilactici D3 2195 to inhabit multiple environments suggests its potential role in diverse ecological niches, including fermented food products and various ecosystems where anaerobic conditions prevail. This adaptability not only highlights its significance in food fermentation processes but also opens avenues for exploring its applications in biotechnology, particularly in the development of probiotic formulations and preservation methods. Understanding the ecological functions of such microbes can provide insights into microbial interactions and contributions to nutrient cycling in anaerobic environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 AQGT00000000.1 Bac0010651 Rhizobium freirei PRF 81 "Rhizobium freirei PRF 81 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. As a non-spore-forming microbe, it relies on vegetative growth in its natural environment. The genus Rhizobium is well-known for its symbiotic relationship with leguminous plants, particularly in nitrogen fixation, which enhances soil fertility and supports plant growth. ↵↵While specific ecological roles of R. freirei PRF 81 have not been detailed, its characteristics suggest it may play a significant role in soil ecosystems, particularly in association with host plants that can benefit from nitrogen enrichment. The aerobic nature of this bacterium indicates it may be involved in processes that require oxygen, potentially influencing soil health and nutrient cycling. The adaptability of R. freirei PRF 81 to moderate temperatures further implies that it could be a key player in temperate agricultural systems, where it might contribute to sustainable farming practices through its interactions with legumes. Understanding the specific interactions and contributions of R. freirei PRF 81 could provide insights into improving nitrogen management in agricultural systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella freirei Gram-negative rod aerobic 25 mesophilic non-spore-forming 363754 AQHN00000000.1 Bac0010652 Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM "Phocaeicola massiliensis, also known by its strain identifiers B84634, Timone 84634, DSM 17679, and JCM, is a Gram-negative bacterium primarily found in the gut. This microbe is characterized by its rod-shaped morphology and is part of the diverse microbial communities that inhabit the gastrointestinal tract of various hosts. ↵↵As a member of the gut microbiota, P. massiliensis may play a role in the digestion of complex carbohydrates and the maintenance of gut health, contributing to the overall homeostasis of the intestinal environment. While the specific metabolic pathways and interactions of this species within the gut microbiome remain to be fully elucidated, its presence suggests a potential involvement in nutrient absorption and fermentation processes.↵↵Given the complex interactions within gut microbiota, P. massiliensis may also serve as an indicator of microbial diversity and gut ecosystem stability. Further research into this organism could provide insights into its functional contributions and the implications of its presence in the gastrointestinal tract of different hosts. Understanding the role of P. massiliensis within the gut could enhance our knowledge of microbial ecology and its impact on host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola massiliensis negative gut 204516 AQHY00000000.1 Bac0010653 Schaalia cardiffensis F0333 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia cardiffensis anaerobic 888050 AQHZ00000000.1 Bac0010654 Butyricicoccus pullicaecorum 1.2 "Butyricicoccus pullicaecorum 1.2 is a Gram-positive, coccoid bacterium characterized as a facultative anaerobe. This organism exhibits a spherical shape and can thrive in both aerobic and anaerobic environments, which suggests a versatile metabolic capability that allows it to adapt to varying oxygen levels in its habitat. As a member of the microbial community, B. pullicaecorum 1.2 may play a role in various biochemical processes, particularly those related to fermentation, given its ability to grow in the absence of oxygen.↵↵The facultative anaerobic nature of B. pullicaecorum 1.2 indicates that it can utilize different metabolic pathways depending on the availability of oxygen, possibly contributing to its ecological success in diverse environments. This adaptability may facilitate its survival in complex ecosystems, such as the gastrointestinal tract of certain animals, where fluctuating oxygen levels are common. The presence of such microbes highlights the intricate balance of microbial communities and their potential impact on nutrient cycling and host interactions. Further studies could elucidate the specific contributions of B. pullicaecorum 1.2 to its ecological niche, especially in relation to its metabolic versatility and interactions with other microorganisms." Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus pullicaecorum Positive Cocci Facultative anaerobe 1203606 AQOB00000000.1 Bac0010655 Pandoraea sp. SD6-2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea sp. SD6-2 1286093 AQOU00000000.1 Bac0010656 Arcticibacter svalbardensis MN12-7 "Arcticibacter svalbardensis MN12-7 is a Gram-negative, rod-shaped bacterium that exhibits versatility in its oxygen requirements, being capable of both anaerobic and aerobic respiration. Isolated from Arctic environments, this microbe has an optimal growth temperature of 16.0°C, indicating its adaptation to cold habitats. The ability to thrive under varying oxygen conditions suggests that Arcticibacter svalbardensis MN12-7 may play a role in biogeochemical cycles in its native ecosystem, potentially influencing nutrient cycling in cold environments. This adaptability to both anaerobic and aerobic conditions may also facilitate its survival in fluctuating environmental conditions typical of polar regions, where oxygen availability can vary significantly. Understanding the physiological traits of Arcticibacter svalbardensis MN12-7 contributes to our knowledge of microbial life in extreme environments and underscores the importance of microbial diversity in maintaining ecological balance in Arctic ecosystems." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Arcticibacter Arcticibacter svalbardensis Gram-negative rod non-motile anaerobic / aerobic 16 psychrotolerant 1150600 AQPN00000000.1 Bac0010657 Corynebacterium glutamicum MT Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum 1310164 AQPS00000000.1 Bac0010658 Gordonia terrae C-6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia terrae 1316928 AQPW00000000.1 Bac0010659 Cupriavidus sp. GA3-3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. GA3-3 1229514 AQPZ00000000.1 Bac0010660 Phaeobacter sp. 22II1-1F12B Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter sp. 22II1-1F12B 1317111 AQQP00000000.1 Bac0010661 Marinibacterium profundimaris strain 22II1-22F33 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Marinibacterium Marinibacterium profundimaris 1679460 AQQR00000000.1 Bac0010662 Aurantimonas sp. 22II-16-19i Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aurantimonas Aurantimonas sp. 22II-16-19i 1317114 AQQS00000000.1 Bac0010663 Oceanococcus atlanticus strain 22II-S10r2 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Oceanococcaceae Oceanococcus Oceanococcus atlanticus 1317117 AQQV00000000.1 Bac0010664 Roseivivax marinus strain 22II-s10s Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseivivax Roseivivax marinus 1379903 AQQW00000000.1 Bac0010665 Thioclava atlantica strain 13D2W-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava atlantica 1317124 AQRC00000000.1 Bac0010666 Streptococcus mitis 11/5 "Streptococcus mitis 11/5 is a Gram-positive bacterium characterized by its cocci shape and typical arrangement in chains or pairs. This strain is nonsporulating, indicating a reliance on its host-associated habitat rather than environmental resilience often conferred by sporulation. As a facultative anaerobe, S. mitis 11/5 can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen conditions present in its host.↵↵The host-associated nature of S. mitis 11/5 suggests its potential role in the microbiota of mammals, where it may contribute to the maintenance of oral and systemic health. While specific interactions with host tissues or immune response are not detailed, the presence of Streptococcus mitis in the human oral cavity is well-documented, often associated with dental health and microbial community balance. ↵↵Notably, the facultative anaerobic metabolism of this strain may allow it to utilize diverse metabolic pathways, which can be advantageous in fluctuating environments within the host. This metabolic flexibility might also facilitate its survival during shifts in oxygen levels, such as those occurring during dental plaque formation or in areas with limited blood flow. Understanding the ecological roles of S. mitis 11/5 within its host could provide insights into its contributions to health and disease dynamics in human-associated microbiomes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1239792 AQTT00000000.1 Bac0010667 Bacillus thuringiensis T01-328 "Bacillus thuringiensis T01-328 is a Gram-positive, rod-shaped bacterium known for its sporulating capabilities and facultative anaerobic metabolism. This microbe is predominantly found in host-associated environments, indicating its potential relationship with specific organisms or ecosystems. As a member of the Bacillus genus, it shares common traits with other species, including the ability to form endospores, which allows it to withstand unfavorable environmental conditions and contribute to its survival and persistence in various habitats.↵↵The facultative anaerobic nature of B. thuringiensis T01-328 suggests that it can adapt to both aerobic and anaerobic conditions, which may enhance its ecological versatility and its ability to thrive in diverse environments. This adaptability is essential for its role in the microbial community, especially in host-associated habitats where oxygen levels can fluctuate.↵↵Understanding the traits of Bacillus thuringiensis T01-328 can provide insights into its ecological interactions and potential applications in biotechnology, such as biocontrol agents in agriculture. The bacterium's ability to sporulate and adapt to varying oxygen levels may also influence its interactions with both host organisms and other microbial species, potentially shaping the dynamics of microbial communities in which it resides." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 1324966 ARXZ00000000.2 Bac0010668 Hyphomonas hirschiana VP5 "Hyphomonas hirschiana VP5 is a Gram-negative, rod-shaped bacterium that typically exists as single cells in aquatic environments. This organism is an aerobic microbe, thriving in well-oxygenated waters, with an optimal growth temperature of 37.0°C. The specific physiological characteristics of H. hirschiana VP5 suggest its adaptation to nutrient-rich aquatic habitats, where it likely plays a role in the microbial community dynamics.↵↵As an aerobic bacterium, H. hirschiana VP5 may contribute to the degradation of organic matter in its aquatic habitat, utilizing oxygen for metabolic processes. The rod shape and single-cell arrangement indicate a potential for efficient movement and nutrient acquisition in the water column, which may be advantageous in varying aquatic conditions. Additionally, its Gram-negative cell wall structure may confer resilience against certain environmental stresses, further supporting its survival and proliferation in competitive ecosystems.↵↵This species exemplifies the diverse morphological and physiological adaptations that aquatic bacteria possess, highlighting their essential roles in biogeochemical cycles and ecosystem functioning. The ecological interactions of H. hirschiana VP5 within its habitat may provide insights into the complexities of microbial life and nutrient dynamics in freshwater and marine systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas neptunium Negative Rod Yes 1 2 Aerobe 37 Mesophilic Aquatic Free living Singles 1280951 ARYI00000000.1 Bac0010669 Hyphomonas jannaschiana VP2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas jannaschiana 1280952 ARYJ00000000.1 Bac0010670 Hyphomonas polymorpha PS728 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas polymorpha 1280954 ARYM00000000.1 Bac0010671 Catenovulum agarivorans DS-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Catenovulum Catenovulum agarivorans 1328313 ARZY00000000.1 Bac0010672 Enterococcus faecalis ATCC 6055 "Enterococcus faecalis ATCC 6055 is a Gram-positive coccus that exhibits a facultative anaerobic metabolism, thriving optimally at a temperature of 37.0°C. As a chemoorganotroph, this strain derives its energy from organic compounds, which is characteristic of many bacteria inhabiting diverse environments. ↵↵E. faecalis is commonly found in various habitats, including human and animal intestines, contributing to its role in the microbial ecosystem. Its ability to survive in both aerobic and anaerobic conditions allows it to inhabit a wide range of ecological niches, from soil to the gastrointestinal tracts of mammals. This versatility not only underscores its ecological significance but also reflects its adaptability to different environmental stressors.↵↵The presence of E. faecalis ATCC 6055 in multiple habitats highlights its potential influence on local microbiomes, where it may participate in nutrient cycling and interact with other microbial communities. This adaptability and ecological flexibility suggest that E. faecalis could play a role in maintaining the balance of microbial populations in diverse environments, which is essential for ecosystem health." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1169311 ASDZ00000000.1 Bac0010673 Candidatus Halobonum tyrrellensis G22 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Candidatus Halobonum Candidatus Halobonum tyrrellensis 1324957 ASGZ00000000.1 Bac0010674 Agrococcus pavilionensis RW1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus pavilionensis 1330458 ASHR00000000.1 Bac0010675 Pseudomonas plecoglossicida NB2011 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas plecoglossicida 1330531 ASJX00000000.1 Bac0010676 Streptococcus sp. HSISS1 S6.1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HSISS1 1316410 ASKB00000000.1 Bac0010677 Enterococcus sp. HSIEG1 S6.6 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. HSIEG1 1316414 ASKG00000000.1 Bac0010678 Paenibacillus sp. FSL R5-192 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R5-192 1226754 ASPR00000000.1 Bac0010679 Paenibacillus sp. FSL R7-269 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R7-269 1226755 ASPS00000000.1 Bac0010680 Paenibacillus sp. FSL R7-277 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R7-277 1227352 ASPX00000000.1 Bac0010681 Viridibacillus arenosi FSL R5-213 "Viridibacillus arenosi FSL R5-213 is a spore-forming, rod-shaped bacterium that exhibits characteristics of both Gram-negative and Gram-positive staining, indicating a unique cell wall composition. This organism is strictly aerobic, thriving in environments with ample oxygen supply. Its ability to form spores suggests that it has adaptations for survival in potentially harsh conditions, allowing it to withstand fluctuations in environmental factors such as nutrient availability and moisture levels.↵↵The dual Gram staining response may point to an evolutionary adaptation, potentially allowing Viridibacillus arenosi to occupy diverse ecological niches. The spore-forming capability enhances its resilience, enabling it to persist in environments that experience periodic desiccation or other stressors. Overall, these traits suggest that Viridibacillus arenosi FSL R5-213 may play a significant role in nutrient cycling within its habitat, particularly in aerobic conditions where it can utilize organic matter. Further investigation into its ecological interactions could reveal its contributions to soil health and microbial community dynamics." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Viridibacillus Viridibacillus arenosi Gram-negative / Gram-positive rod aerobic spore-forming 1227360 ASQA00000000.1 Bac0010682 Clostridium sartagoforme AAU1 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sartagoforme 1202534 ASRV00000000.1 Bac0010683 Chondromyces apiculatus DSM 436 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Chondromyces Chondromyces apiculatus 1192034 ASRX00000000.1 Bac0010684 Bacteroides uniformis dnLKV2 "Bacteroides uniformis dnLKV2 is a Gram-negative, anaerobic bacterium that belongs to the genus Bacteroides, which is known for its role in the human gut microbiome. As an anaerobe, B. uniformis dnLKV2 thrives in environments devoid of oxygen, which is characteristic of the gastrointestinal tract where it contributes to the fermentation of complex polysaccharides. ↵↵The Gram-negative classification indicates that this microbe possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that often influences its interactions with the host and other microbial species. This structural characteristic may also affect its susceptibility to certain antibiotics, which typically target Gram-positive bacteria differently than Gram-negative ones.↵↵Bacteroides species, including B. uniformis, are recognized for their ability to degrade dietary fibers and other complex carbohydrates, producing short-chain fatty acids (SCFAs) as metabolic byproducts. SCFAs play a crucial role in maintaining gut health and modulating inflammatory responses. The specific strain dnLKV2 may exhibit unique metabolic pathways or enzymatic capabilities that could enhance its role in nutrient absorption and overall gut homeostasis.↵↵In summary, Bacteroides uniformis dnLKV2 exemplifies the essential functions of anaerobic, Gram-negative bacteria within the human gut, particularly in fiber degradation and SCFA production, which are vital for supporting host health and microbial diversity. The strain's adaptation to anaerobic conditions underscores the complexity of gut microbial ecosystems and their metabolic interdependencies." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe 1235787 ASSO00000000.1 Bac0010685 Phocaeicola sartorii strain dnLKV3 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola sartorii 671267 ASSP00000000.1 Bac0010686 Lachnospiraceae bacterium A4 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium A4 397291 ASSR00000000.1 Bac0010687 Eubacterium sp. 14-2 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. 14-2 1235790 ASSS00000000.1 Bac0010688 Lachnospiraceae bacterium 3-1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 3-1 397288 ASST00000000.1 Bac0010689 Lachnospiraceae bacterium M18-1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium M18-1 1235792 ASSV00000000.1 Bac0010690 Lachnospiraceae bacterium MD335 strain COE1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium MD335 1235793 ASSW00000000.1 Bac0010691 Lachnospiraceae bacterium 10-1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium 10-1 1235800 ASTF00000000.1 Bac0010692 Escherichia sp. KTE114 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. KTE114 1169321 ASTS00000000.1 Bac0010693 Escherichia coli KTE38 "Escherichia coli KTE38 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of pairs or singles. This strain thrives optimally at 37.0°C, reflecting its adaptation to the warm environments found within host organisms. E. coli KTE38 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which enhances its versatility in various host-associated habitats.↵↵The habitat preference for E. coli KTE38 suggests a close association with host organisms, where it may play a role in the microbiota. While specific interactions with the host are not detailed in the provided traits, the ecological dynamics of E. coli strains often involve interactions that can influence nutrient absorption and immune response modulation. Given its facultative anaerobic nature, E. coli KTE38 might exploit niches within the host that experience fluctuating oxygen levels, allowing it to occupy a range of environments within the host, from the gut to other potential niches.↵↵This adaptability not only underscores the ecological versatility of E. coli strains but also highlights the potential for E. coli KTE38 to contribute to the complex relationships within the host microbiome, where it may engage in both competitive and cooperative interactions with other microbial inhabitants. Such dynamics are essential for understanding the broader implications of microbial communities in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1169355 ASUD00000000.1 Bac0010694 Escherichia coli KTE182 "Escherichia coli KTE182 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for warm-blooded hosts as its primary habitat. E. coli KTE182 is classified as a facultative anaerobe, which allows it to adapt to varying oxygen levels, facilitating its survival in diverse environments within host organisms.↵↵As a member of the Enterobacteriaceae family, E. coli KTE182 is closely associated with the intestinal microbiota of many animals, including humans. This association suggests a role in nutrient processing and maintaining gut homeostasis, although the specific functions of this strain in the microbiome remain to be fully elucidated. The ability of E. coli KTE182 to exist in both aerobic and anaerobic conditions enables it to occupy a range of ecological niches within the host, potentially contributing to its adaptability and survival in fluctuating environments.↵↵Given its optimal growth temperature and habitat, E. coli KTE182 may play a significant role in the interactions between the host's immune system and the gut microbiome, influencing overall health and disease resistance. Understanding the specific traits and behaviors of E. coli KTE182 can provide insights into its contributions to host-associated microbiomes and the complex dynamics of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1181728 ASUG00000000.1 Bac0010695 Escherichia coli KTE64 "Escherichia coli KTE64 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts. E. coli KTE64 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, enabling it to adapt to varying environmental conditions within its host-associated habitat.↵↵The host-associated nature of E. coli KTE64 suggests a role in the complex microbial communities found within the gastrointestinal tracts of animals, where it may contribute to nutrient metabolism and gut health. This adaptability and the capacity for diverse growth conditions highlight the ecological versatility of E. coli KTE64, allowing it to occupy a niche within the dynamic microbiota. The ability to thrive at physiological temperatures and in diverse oxygen levels may also provide insights into its survival mechanisms and interactions within host environments, underscoring the importance of such traits in understanding microbial ecology and host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182671 ASUV00000000.1 Bac0010696 Escherichia coli KTE73 "Escherichia coli KTE73 is a Gram-negative, rod-shaped bacterium characterized by its occurrence in pairs or as singles. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. E. coli KTE73 has an optimal growth temperature of 37°C, which aligns with the typical body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli KTE73 is likely to inhabit the gastrointestinal tracts of various organisms, where it may participate in nutrient absorption and fermentation processes. The ability to exist in both aerobic and anaerobic conditions may provide E. coli KTE73 with a competitive advantage in fluctuating environments within the host, where oxygen availability can vary significantly.↵↵The ecological niche of E. coli KTE73 highlights its potential role in the gut microbiome, where it might contribute to the maintenance of gut health and the metabolic processes of its host. Understanding the traits of this strain can provide insights into the functional diversity of gut microbes and their interactions with host organisms. Further research into E. coli KTE73 may reveal its specific contributions to gut ecology and host interactions, which could have implications for understanding microbial dynamics in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182680 ASVA00000000.1 Bac0010697 Escherichia coli KTE100 "Escherichia coli KTE100 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cellular arrangement characterized by pairs and singles, which may influence its interactions within various biological systems. E. coli KTE100 thrives optimally at a temperature of 37.0°C, aligning with the typical physiological temperature of warm-blooded hosts, suggesting its adaptation to inhabit the intestinal tracts of mammals.↵↵As a facultative anaerobe, E. coli KTE100 possesses the metabolic versatility to grow in both aerobic and anaerobic conditions, allowing it to exploit a range of niches within the host environment. This adaptability may contribute to its survival and proliferation in diverse microenvironments, such as the gut, where oxygen levels can fluctuate significantly.↵↵While the specific ecological role of E. coli KTE100 within its habitat remains to be fully characterized, its association with host organisms indicates potential involvement in microbiota dynamics and nutrient cycling. Moreover, the ability to thrive at the host’s optimal temperature and its facultative anaerobic nature suggest that E. coli KTE100 may play a significant role in maintaining host health and contributing to digestive processes. Understanding the traits of this strain can provide valuable insights into the broader ecological functions of E. coli within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182699 ASVF00000000.1 Bac0010698 Escherichia coli KTE108 "Escherichia coli KTE108 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of many warm-blooded hosts. E. coli KTE108 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which enhances its adaptability to varying conditions within its host-associated habitat.↵↵The presence of E. coli KTE108 in host-associated environments implies a significant role in the microbiota of its host, contributing to various metabolic processes. Its facultative anaerobic nature allows it to effectively utilize available oxygen and switch metabolic pathways depending on the availability of this gas, which is crucial for survival in diverse microenvironments within the host.↵↵Further investigation into the ecological roles of E. coli KTE108 may reveal insights into its contributions to gut health and microbial community dynamics. Understanding its functions could elucidate how this strain interacts with other microorganisms and influences the overall homeostasis of the microbiome in its host, potentially affecting nutrient absorption and immune responses." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1182704 ASVJ00000000.1 Bac0010699 Enterococcus hirae ATCC 9790 "Enterococcus hirae ATCC 9790 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This organism is part of the Enterococcus genus, which is known for its ability to thrive in various environments, including those with fluctuating oxygen levels. E. hirae can grow in both aerobic and anaerobic conditions, showcasing its metabolic versatility, which is typical of facultative anaerobes.↵↵The morphology of E. hirae as cocci indicates that it typically appears in spherical forms, often found in pairs or chains, a characteristic feature that may play a role in its ecological interactions. As a member of the gut microbiota in many vertebrates, Enterococcus species, including E. hirae, are often involved in various biochemical processes within their host organisms. They can contribute to fermentation and the breakdown of complex carbohydrates, potentially influencing gut health and microbial community dynamics.↵↵The adaptability of Enterococcus hirae ATCC 9790 to different environmental conditions suggests its potential resilience in diverse habitats, including those subjected to varying levels of oxygen and nutrient availability. This capability highlights the importance of E. hirae not only in clinical contexts but also in ecological studies, where understanding its role in microbial communities can provide insights into its contributions to nutrient cycling and ecosystem functioning." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus hirae Positive Cocci Facultative anaerobe 768486 ASVZ00000000.1 Bac0010700 Enterococcus columbae DSM 7374 = ATCC 51263 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus columbae microaerophile 1121865 ASWJ00000000.1 Bac0010701 Enterococcus sulfureus ATCC 49903 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sulfureus microaerophile 1140003 ASWO00000000.1 Bac0010702 Exiguobacterium sp. S17 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. S17 856854 ASXD00000000.1 Bac0010703 Agrobacterium sp. D14 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. D14 1336743 ASXX00000000.1 Bac0010704 Porphyromonas gingivalis SJD12 "Porphyromonas gingivalis SJD12 is a Gram-negative, rod-shaped bacterium that is nonsporulating and thrives in anaerobic conditions. This microbe is typically associated with host environments, indicating its adaptation to living within specific biological systems, particularly in the human oral cavity where it is known to be part of the subgingival microbiota. Its optimal growth temperature is 37.0°C, aligning with the physiological temperature of the human body, which further suggests its role in host-associated habitats.↵↵The anaerobic nature of P. gingivalis SJD12 highlights its dependence on low-oxygen environments, which is characteristic of many oral bacteria that inhabit periodontal pockets. As an anaerobe, it likely utilizes fermentation pathways to generate energy in the absence of oxygen, which may contribute to its ecological niche in the oral biofilm. ↵↵Understanding the growth requirements and habitat preferences of Porphyromonas gingivalis SJD12 may provide insights into its interactions within the oral microbiome and its potential implications in oral health and disease. The ability of this bacterium to thrive in anaerobic conditions underscores the importance of oxygen depletion in the development and maintenance of polymicrobial communities in host-associated environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1297567 ASYP00000000.1 Bac0010705 Helicobacter pylori PZ5024 "Helicobacter pylori PZ5024 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This species thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the gastric environment of its host. As a host-associated microbe, H. pylori PZ5024 is primarily found in the stomach, where it is adapted to survive the acidic conditions while utilizing microaerobic conditions for its metabolic processes.↵↵The unique morphology of H. pylori PZ5024, combined with its specific oxygen requirements, suggests that it has evolved mechanisms to cope with the challenges of its niche. This adaptation may allow it to play a role in the complex microbial ecosystem of the stomach, potentially influencing host health and disease states. Understanding the traits of H. pylori PZ5024 can provide insights into its interactions with the host environment and the potential implications for gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1337391 ASYS00000000.1 Bac0010706 Helicobacter pylori PZ5080 "Helicobacter pylori PZ5080 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the typical body temperature of its host organisms. H. pylori PZ5080 is classified as microaerophilic, indicating that it requires lower levels of oxygen for growth compared to atmospheric concentrations. ↵↵The habitat of H. pylori PZ5080 is predominantly host-associated, suggesting that it resides within the gastric environment of its host. This ecological niche is significant as it may influence the microbe's metabolic activities and interactions with host tissues. The microaerophilic nature of H. pylori PZ5080 allows it to adapt to the oxygen-limited conditions found in the stomach, where it can potentially engage in complex interactions with the host’s immune system.↵↵Understanding the specific traits of H. pylori PZ5080, particularly its temperature preference and oxygen requirements, can provide insights into its survival mechanisms within the host environment. This adaptability may play a crucial role in its persistence in the gastric niche, where it may contribute to the establishment of complex microbial communities and influence host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1337394 ASYV00000000.1 Bac0010707 Osedax symbiont Rs2 5222_411 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Osedax symbiont Rs2 1330035 ASZI00000000.1 Bac0010708 Osedax symbiont Rs1 5221_231 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Osedax symbiont Rs1 1330036 ASZJ00000000.1 Bac0010709 Alkalihalophilus marmarensis DSM 21297 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalihalophilus Alkalihalophilus marmarensis 1188261 ATAE00000000.1 Bac0010710 Microbacterium maritypicum MF109 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium maritypicum 29 mesophilic 1333857 ATAO00000000.1 Bac0010711 Stenotrophomonas maltophilia MF89 "Stenotrophomonas maltophilia MF89 is a Gram-negative, rod-shaped bacterium that thrives in diverse habitats, demonstrating its versatility as an aerobe. This organism is part of a genus recognized for its adaptability to various environments, which may include soil, water, and hospital settings. Its aerobic metabolism allows it to utilize oxygen for energy production, contributing to its survival in oxygen-rich environments.↵↵The morphological characteristics of S. maltophilia MF89, specifically its rod shape, suggest its potential for motility and colonization in its ecological niches. This bacterium has garnered attention for its ability to thrive in multiple environments, indicating a level of resilience and adaptability that may confer advantages in competing microbial communities.↵↵Given its widespread occurrence, S. maltophilia MF89 may play a role in biogeochemical cycles, particularly in nutrient cycling processes in soil and aquatic ecosystems. The ecological significance of this organism extends beyond its environmental presence, as it may also interact with other microorganisms, influencing community dynamics and ecosystem health. These interactions could be crucial for maintaining microbial diversity and function in its habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 1333853 ATAP00000000.1 Bac0010712 Actinomyces sp. HPA0247 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. HPA0247 1203556 ATCA00000000.1 Bac0010713 Streptococcus sp. HPH0090 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HPH0090 1203590 ATCD00000000.1 Bac0010714 Sutterella wadsworthensis HGA0223 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella wadsworthensis 1203554 ATCF00000000.1 Bac0010715 Geobacillus sp. WSUCF1 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. WSUCF1 886559 ATCO00000000.1 Bac0010716 Sphingobacterium paucimobilis HER1398 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium paucimobilis 1346330 ATDL00000000.1 Bac0010717 Cedecea davisae DSM 4568 "Cedecea davisae DSM 4568 is a Gram-negative bacterium that exhibits strict aerobic respiration. This organism belongs to the family Enterobacteriaceae and is characterized by its ability to thrive in oxygen-rich environments, which is a notable trait among many members of this family that can also exhibit facultative anaerobic metabolism. The Gram-negative nature of Cedecea davisae indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which includes lipopolysaccharides that can influence interactions with surrounding environments and other microorganisms.↵↵As an aerobic bacterium, Cedecea davisae is reliant on oxygen for its metabolic processes, which may confer certain advantages in competitive environments where oxygen availability is high. The organism’s aerobic metabolism suggests that it may play a role in processes such as nutrient cycling in its native habitat, although specific ecological roles remain to be fully elucidated.↵↵Cedecea davisae DSM 4568 may be particularly significant in microbial communities where oxygen gradients are present, as its aerobic lifestyle could allow it to outcompete anaerobic organisms for resources in oxygen-rich niches. This trait might also indicate its potential utility in biotechnological applications where oxygen is a critical factor, such as in wastewater treatment or bioremediation processes. Understanding the ecological role and metabolic capabilities of Cedecea davisae can provide insights into the dynamics of microbial communities in oxygenated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea davisae negative aerobic 566551 ATDT00000000.1 Bac0010718 Treponema maltophilum ATCC 51939 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema maltophilum anaerobic 1125699 ATFF00000000.1 Bac0010719 Dermabacter sp. HFH0086 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Dermabacter Dermabacter sp. HFH0086 1203568 ATFO00000000.1 Bac0010720 Bacteroides stercoris CC31F "Bacteroides stercoris CC31F is a Gram-negative anaerobic bacterium that is part of the diverse microbial community residing in the gastrointestinal tract of various organisms. This species is characterized by its ability to thrive in environments devoid of oxygen, which is typical for many members of the Bacteroides genus. The anaerobic nature of B. stercoris CC31F suggests that it plays a crucial role in the fermentation processes within the gut, contributing to the breakdown of complex polysaccharides and the production of short-chain fatty acids, which are important for host health and metabolism.↵↵As a Gram-negative organism, B. stercoris CC31F possesses a distinctive outer membrane structure that may influence its interactions with the host's immune system and other microbial inhabitants of the gut. This structural characteristic is critical for the bacterium's survival in the competitive gut environment, where it must contend with various other microbial species and host defenses.↵↵The ecological role of B. stercoris CC31F within the gastrointestinal microbiome underscores the importance of anaerobic bacteria in nutrient cycling and maintaining gut homeostasis. The metabolic activities of this bacterium and its relatives not only contribute to digestion but also play a significant role in the overall health of the host by modulating the gut environment and influencing immune responses. Further study of B. stercoris CC31F may provide insights into the complex interplay of gut microbiota and their effects on host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 1073351 ATFP00000000.1 Bac0010721 Acinetobacter rudis CIP 110305 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter rudis aerobic 421052 ATGI00000000.1 Bac0010722 Acinetobacter colistiniresistens strain NIPH 2036 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter colistiniresistens 280145 ATGK00000000.1 Bac0010723 Desulfococcus multivorans DSM 2059 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfococcus Desulfococcus multivorans anaerobic 1121405 ATHJ00000000.1 Bac0010724 Novosphingobium lindaniclasticum LE124 "Novosphingobium lindaniclasticum LE124 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This microbe exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions that may be typical of temperate habitats. ↵↵As a member of the Novosphingobium genus, N. lindaniclasticum LE124 may possess unique metabolic capabilities that allow it to degrade various environmental pollutants, although specific pathways have not been detailed in the provided traits. The aerobic requirement indicates that this organism thrives in oxygen-rich environments, which may influence its ecological niche, potentially allowing it to play a role in bioremediation processes in contaminated soils or aquatic systems.↵↵The non-spore-forming characteristic of N. lindaniclasticum LE124 suggests a reliance on vegetative growth for survival and reproduction, which may impact its resilience to environmental stressors compared to spore-forming bacteria. The understanding of its optimal growth temperature further emphasizes its adaptability to specific ecological conditions. ↵↵Overall, the traits of Novosphingobium lindaniclasticum LE124 highlight its potential significance in biogeochemical cycles and its role in maintaining ecosystem health, particularly in environments impacted by anthropogenic activities." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium lindaniclasticum Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1096930 ATHL00000000.1 Bac0010725 Sphingobium quisquiliarum P25 "Sphingobium quisquiliarum P25 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on favorable environmental conditions for survival and proliferation. ↵↵The rod shape of Sphingobium quisquiliarum P25 may facilitate its motility and nutrient acquisition in its habitat, potentially enhancing its ability to engage with various substrates in its ecological niche. Given its aerobic requirement, this bacterium likely plays a role in the degradation of organic compounds in oxygen-rich environments, contributing to nutrient cycling and organic matter breakdown. ↵↵The specific adaptations of Sphingobium quisquiliarum P25 to its optimal temperature and aerobic lifestyle may position it as a key player in biogeochemical processes, particularly in environments subject to organic pollutant degradation. Understanding the metabolic pathways and ecological functions of this bacterium could provide insights into its potential applications in bioremediation strategies, particularly in the treatment of contaminated environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium quisquiliarum Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1329909 ATHO00000000.1 Bac0010726 Desulfovibrio sp. X2 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. X2 941449 ATHV00000000.1 Bac0010727 Leifsonia rubra CMS 76R Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Salinibacterium Salinibacterium rubrum 1348338 ATIA00000000.1 Bac0010728 Sphingobium baderi LL03 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium wenxiniae 595605 ATIB00000000.1 Bac0010729 Enterococcus faecium 13.SD.W.09 "Enterococcus faecium 13.SD.W.09 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic growth. As a member of the Enterococcus genus, this strain is characterized by its ability to thrive in both aerobic and anaerobic environments, indicating its metabolic versatility. The cocci morphology suggests a spherical shape, which is typical of many Enterococcus species, allowing for potential colonization in varied ecological niches.↵↵This strain's facultative anaerobic nature implies that it can utilize oxygen when available but can also switch to fermentation pathways under oxygen-limited conditions. Such adaptability not only enhances its survival in diverse environments but also contributes to its resilience in fluctuating ecological contexts. ↵↵While Enterococcus faecium is often studied in clinical settings, particularly concerning its role in antibiotic resistance, the specific ecological role of strain 13.SD.W.09 remains to be elucidated. However, its traits suggest a potential for symbiotic relationships in microbiomes where nutrient availability and oxygen levels may vary significantly. Understanding the ecological implications of this strain could provide insights into its interactions within microbial communities, particularly in environments with dynamic oxygen gradients." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe 1259824 ATID00000000.1 Bac0010730 Enterococcus faecalis 13-SD-W-01 "Enterococcus faecalis 13-SD-W-01 is a Gram-positive coccus that thrives optimally at 37.0°C and exhibits facultative anaerobic respiration. This microbe is classified as a chemoorganotroph, indicating it derives energy from organic compounds, which suggests its versatility in utilizing various substrates for growth. ↵↵Enterococcus faecalis strains, including 13-SD-W-01, are known to inhabit multiple environments, which underscores their ecological adaptability and potential for diverse interactions within microbial communities. The ability to grow in both aerobic and anaerobic conditions further enhances its survival across various habitats, ranging from human gastrointestinal tracts to environmental niches.↵↵The metabolic flexibility of Enterococcus faecalis 13-SD-W-01 may contribute to its role in nutrient cycling within its ecosystems, allowing it to thrive in dynamic conditions. This adaptability not only facilitates its persistence in different environments but also positions it as a potential player in microbial interactions, influencing community structure and function." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1260356 ATIO00000000.1 Bac0010731 Enterococcus faecalis VC1B-1 "Enterococcus faecalis VC1B-1 is a Gram-positive, cocci-shaped bacterium characterized as a facultative anaerobe that thrives optimally at 37.0°C. As a chemoorganotroph, this microbe utilizes organic compounds as its energy source, enabling it to adapt to various habitats where organic matter is present. The ability to thrive under both aerobic and anaerobic conditions suggests a versatile metabolic capacity, allowing E. faecalis VC1B-1 to occupy diverse ecological niches. ↵↵This strain's Gram-positive nature indicates a thick peptidoglycan layer in its cell wall, which may confer certain advantages in its ability to withstand environmental stresses compared to Gram-negative counterparts. The adaptability of E. faecalis VC1B-1 to multiple habitats highlights its potential role in various ecosystems where organic substrates are abundant, such as in soil, water, and within the gastrointestinal tracts of animals.↵↵In summary, Enterococcus faecalis VC1B-1 exemplifies a resilient and versatile microbe capable of thriving in dynamic environments, reflecting its ecological importance in nutrient cycling and organic matter decomposition. Its metabolic flexibility may also provide insights into its interactions with other microbial communities in complex ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living 1244143 ATIZ00000000.1 Bac0010732 Gardnerella vaginalis JCP8522 "Gardnerella vaginalis JCP8522 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits anaerobic growth characteristics, thriving optimally at 37.0°C. As a chemoheterotroph, G. vaginalis JCP8522 derives its energy from organic compounds, which aligns with its habitat as a host-associated microbe, frequently identified in the human urogenital tract. ↵↵This bacterium plays a notable role in the complex microbial ecosystem of the vagina, where it is part of the normal flora in some individuals. Its presence and metabolic activities may influence the local microbiome dynamics, potentially affecting the health of the host. Given its anaerobic nature, G. vaginalis JCP8522 is adapted to the low-oxygen environment of the vaginal niche, where it interacts with other microbial species. ↵↵The ecological role of Gardnerella vaginalis JCP8522 may extend beyond mere colonization, as it could contribute to the maintenance of microbial balance within the host. This balance is crucial for preventing dysbiosis, which can lead to various reproductive health issues. Understanding the specific interactions and functions of G. vaginalis JCP8522 within the vaginal microbiome may provide insights into its broader implications for female health and disease." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261071 ATJE00000000.1 Bac0010733 Gardnerella vaginalis JCP8151B "Gardnerella vaginalis JCP8151B is a Gram-positive, rod-shaped bacterium that exhibits anaerobic metabolism and thrives optimally at a temperature of 37.0°C. This microbe is classified as a nonsporulating, chemoheterotrophic organism, indicating that it derives its energy from organic compounds and does not form spores under natural conditions. ↵↵G. vaginalis is primarily found in host-associated environments, suggesting a close association with the human microbiome, particularly in the vaginal microbiota. The presence of this organism in such specific habitats may play a role in maintaining the delicate balance of microbial communities, although the implications of its metabolic activities in this context require further investigation. ↵↵Notably, the anaerobic nature of G. vaginalis suggests that it may compete with other microbial species for resources in low-oxygen environments, potentially influencing community dynamics within the host. This competitive interaction could have significant ramifications for microbial diversity and stability in the vaginal ecosystem, highlighting the necessity for further research into its ecological role and the factors that govern its presence and abundance in host-associated environments." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261068 ATJH00000000.1 Bac0010734 Gardnerella vaginalis JCP8151A "Gardnerella vaginalis JCP8151A is a Gram-positive, rod-shaped bacterium that exhibits nonsporulating characteristics and thrives in anaerobic environments. This microbe is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds rather than photosynthesis or inorganic substances. Its optimal growth temperature is approximately 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat.↵↵G. vaginalis has been studied primarily in the context of the human vaginal microbiome, where it plays a role in the complex interplay of microbial communities. Its presence and relative abundance may be influenced by various factors, including hormonal changes and the overall health of the vaginal environment. While the specific ecological roles of G. vaginalis within this niche are not fully elucidated, its anaerobic requirement suggests it may contribute to maintaining a balanced microbial ecosystem by utilizing substrates that are less accessible to aerobic microorganisms.↵↵Understanding the characteristics and habitat of Gardnerella vaginalis JCP8151A can provide insights into the dynamics of microbial communities in the human body, particularly regarding how anaerobic bacteria interact with host physiology and other microbial inhabitants. This knowledge could be pivotal in exploring the implications of microbial balance in health and disease." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261067 ATJI00000000.1 Bac0010735 Gardnerella vaginalis JCP8066 "Gardnerella vaginalis JCP8066 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic environments and is associated with host organisms. This microbe exhibits chemoheterotrophic metabolism, utilizing organic compounds as its energy source. Optimal growth occurs at a temperature of 37.0°C, which aligns with the physiological temperature of the human body, suggesting its adaptation to a host-associated habitat.↵↵As a member of the microbial community in the human vagina, Gardnerella vaginalis plays a role in the complex dynamics of the vaginal microbiota. Its anaerobic nature indicates that it may contribute to the metabolic processes occurring in microenvironments where oxygen levels are limited. The presence of this organism in the vaginal microbiome can influence the overall microbial balance, and its interactions with other microbial species are critical for maintaining vaginal health.↵↵Emerging evidence suggests that variations in the abundance of Gardnerella vaginalis may be linked to shifts in the microbial community structure, which underscores its potential influence on the ecological dynamics within the host niche. Understanding the role of Gardnerella vaginalis JCP8066 in these microbial interactions could provide insights into its contributions to host health and the implications of dysbiosis in vaginal ecosystems." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261064 ATJL00000000.1 Bac0010736 Gardnerella pickettii JCP8017A "Gardnerella pickettii JCP8017A is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This microbe has an optimal growth temperature of 37.0°C, which aligns with the typical physiological conditions found in host-associated habitats. ↵↵As a member of the Gardnerella genus, G. pickettii JCP8017A is primarily associated with various hosts, suggesting a close relationship with host microbiomes and potential roles in microbial community dynamics. While the specific ecological functions of G. pickettii JCP8017A remain to be fully elucidated, its anaerobic lifestyle indicates that it likely participates in metabolic processes that are integral to the maintenance of anaerobic environments within its host. Such processes may involve the breakdown of organic compounds and interactions with other microbial species, contributing to the overall stability and function of the host-associated microbiota.↵↵The specific adaptation of G. pickettii JCP8017A to anaerobic conditions may provide insights into the evolutionary pressures that shape the microbial communities in host niches, highlighting the intricate relationships between host organisms and their resident microorganisms. Further exploration of this bacterium's metabolic pathways and interactions could enhance our understanding of its role in host-associated ecosystems." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella pickettii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261062 ATJN00000000.1 Bac0010737 Gardnerella pickettii JCP7659 "Gardnerella pickettii JCP7659 is a Gram-positive, non-sporulating rod-shaped bacterium that exhibits characteristics consistent with a chemoheterotrophic metabolism. This microbe thrives in anaerobic environments, indicating its adaptation to conditions where oxygen is limited. Optimal growth occurs at a temperature of 37.0°C, reflecting its association with host environments, potentially within the human microbiome.↵↵As a host-associated organism, G. pickettii may play a role in the complex interactions within microbial communities residing in various host tissues. Its anaerobic nature suggests that it may contribute to metabolic processes that are essential for host health, potentially influencing local microbial diversity and stability. The specific ecological niche that G. pickettii occupies underscores the importance of studying host-associated microbes, as they can provide insights into symbiotic relationships and their contributions to overall host physiology.↵↵Given its traits, G. pickettii could be involved in the breakdown of organic materials or the fermentation of substrates within the anaerobic niches it inhabits. Understanding its specific interactions within host-associated environments can illuminate broader ecological dynamics and the roles of anaerobic bacteria in maintaining microbial homeostasis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella pickettii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 1261059 ATJQ00000000.1 Bac0010738 Bifidobacterium bombi DSM 19703 DSM19703_C4 "Bifidobacterium bombi DSM 19703, a Gram-positive, non-spore-forming rod-shaped bacterium, exhibits optimal growth at a temperature of 29.0°C and thrives under anaerobic conditions. This species is part of the diverse Bifidobacterium genus, which is noteworthy for its role in the gut microbiota of various hosts. The anaerobic metabolic requirements suggest that B. bombi may participate in fermentation processes, contributing to the production of short-chain fatty acids, which are beneficial for host health.↵↵The specific adaptation to an optimal temperature of 29.0°C indicates that B. bombi may be well-suited for environments that are cooler than typical mammalian body temperatures, possibly suggesting a niche within specific habitats or hosts that maintain such temperatures. This trait could reflect its ecological role in particular digestive tracts or environments where temperature regulation aligns with its growth preferences. ↵↵Further studies could elucidate the precise ecological interactions of Bifidobacterium bombi DSM 19703, particularly in relation to its potential symbiotic relationships with other microbial species and its contributions to the overall health of the ecosystem it inhabits. Understanding these dynamics may reveal insights into the evolutionary adaptations of Bifidobacterium species in various environments." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bombi Gram-positive rod non-motile anaerobic 29 mesophilic non-spore-forming 471511 ATLK00000000.1 Bac0010739 Pseudomonas sp. CFII64 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. CFII64 911242 ATLO00000000.1 Bac0010740 Thermoplasmatales archaeon E-plasma AMDU2_EPLC00017 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon E-plasma 667137 ATME00000000.1 Bac0010741 Thermoplasmatales archaeon A-plasma AMDU1_APLC00118 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon A-plasma 667135 ATMF00000000.1 Bac0010742 Chlamydia psittaci 10_743_SC13 Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci 1238236 ATNC00000000.1 Bac0010743 Thermus sp. NMX2.A1 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NMX2.A1 570924 ATNI00000000.1 Bac0010744 Pseudomonas aeruginosa VRFPA03 "Pseudomonas aeruginosa VRFPA03 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is heterotrophic, indicating its reliance on organic compounds for energy, and it thrives in aerobic conditions, requiring oxygen for growth. The optimal temperature for its growth is approximately 25.0 degrees Celsius, suggesting it is well-adapted to a range of environments, potentially including soil, water, and various organic substrates.↵↵The versatility of Pseudomonas aeruginosa VRFPA03's habitat is noteworthy, as it can be found in multiple ecological niches. This adaptability may contribute to its resilience and survival in diverse environments, from natural ecosystems to anthropogenic settings. The ability to thrive at moderate temperatures and in the presence of oxygen further underscores its ecological significance, as this microbe can exploit a variety of organic materials in its surroundings.↵↵In conclusion, Pseudomonas aeruginosa VRFPA03 exemplifies the adaptability of certain microbial species to a range of environmental conditions, which may allow it to play a crucial role in nutrient cycling and organic matter decomposition in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1350465 ATNK00000000.1 Bac0010745 Cyclobacterium qasimii M12-11B "Cyclobacterium qasimii M12-11B is a Gram-negative bacterium that exhibits a preference for aerobic conditions and thrives optimally at a temperature of 16.0°C. This microbe is characterized by its unique metabolic capabilities that enable it to utilize available nutrients in oxygen-rich environments. ↵↵The Gram-negative classification indicates that Cyclobacterium qasimii M12-11B possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of many bacteria within this group. This structural feature may contribute to its adaptability and resilience in diverse environmental conditions, particularly in aquatic ecosystems where oxygen levels can fluctuate.↵↵The optimal growth temperature of 16.0°C suggests that Cyclobacterium qasimii M12-11B is likely adapted to cooler environments, such as those found in temperate or polar regions. This temperature preference may influence its ecological niche, potentially allowing it to play a role in nutrient cycling processes within those habitats. ↵↵As an aerobic organism, Cyclobacterium qasimii M12-11B may engage in oxidative metabolism, which could provide insights into its interactions with other microbial communities in its environment. Understanding these dynamics may reveal important ecological roles that this bacterium plays, particularly concerning its contributions to the degradation of organic matter and the cycling of carbon in its native ecosystem." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Cyclobacterium Cyclobacterium qasimii Gram-negative non-motile aerobic 16 psychrotolerant 641524 ATNM00000000.1 Bac0010746 Sphingobium indicum IP26 "Sphingobium indicum IP26 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats, exhibiting optimal growth at a temperature of 28.0°C. This microbe is strictly aerobic, requiring oxygen for its metabolic processes. The Gram-negative cell wall structure of Sphingobium indicum IP26 suggests a complex outer membrane that may contribute to its adaptability in various environmental conditions.↵↵The preference for a terrestrial habitat indicates that Sphingobium indicum IP26 may play a significant role in soil microbial communities, potentially participating in the degradation of organic compounds and influencing nutrient cycling. Its specific growth temperature suggests it is well-adapted to moderate climates, which may inform studies on its ecological interactions and potential applications in bioremediation.↵↵Given its aerobic nature and terrestrial habitat, Sphingobium indicum IP26 could be an important player in the biogeochemical processes of soil ecosystems, particularly in aerobic decomposition and the transformation of organic matter. Further research into its metabolic capabilities and interactions with other soil microorganisms may reveal additional ecological significance and practical applications in environmental microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium indicum Negative Rod No 1 2 Aerobic 28 Mesophilic Terrestrial Free living 1346790 AUDA00000000.1 Bac0010747 Synechococcus sp. 60AY4M2 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. 60AY4M2 1353262 AUMZ00000000.1 Bac0010748 Thioclava indica strain DT23-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava indica 1353528 AUNB00000000.1 Bac0010749 Thalassospira permensis NBRC 106175 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira permensis 1353532 AUNC00000000.1 Bac0010750 Bacteriovorax sp. Seq25_V Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. Seq25_V 1201288 AUNI00000000.1 Bac0010751 Clostridium sp. BL8 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. BL8 1354301 AUPA00000000.1 Bac0010752 Pseudomonas mediterranea CFBP 5447 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mediterranea 1348058 AUPB00000000.1 Bac0010753 Sulfurimonas hongkongensis strain AST-10 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas hongkongensis 1172190 AUPZ00000000.1 Bac0010754 Helicobacter pylori UM038 "Helicobacter pylori UM038 is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and arrangement in singles. It thrives optimally at a temperature of 37.0°C, which coincides with the typical body temperature of its host organisms. This microbe is predominantly associated with host environments, indicating a specialized adaptation to living within the gastrointestinal tract of mammals.↵↵As a member of the Helicobacter genus, H. pylori UM038 is likely involved in complex interactions with its host, which may influence both the microbial community and host physiology. The microaerophilic nature of H. pylori UM038 suggests that it requires reduced levels of oxygen for growth, a condition typically found in the gastric environment. This adaptation may allow the bacterium to exploit niches that are less accessible to aerobic microbes, contributing to its survival and persistence in a competitive ecosystem.↵↵Further exploration of H. pylori UM038 could provide insights into its role within the host's microbiome, as well as its potential implications for host health. The unique combination of its Gram-negative status, spirilla morphology, and microaerophilic requirements highlights its specialized adaptations to a host-associated lifestyle, which may further elucidate its ecological significance in gastrointestinal microbiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1352343 AUSL00000000.1 Bac0010755 Helicobacter pylori UM067 "Helicobacter pylori UM067 is a Gram-negative, microaerophilic bacterium characterized by its unique spirilla shape and solitary cell arrangement. This species thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions of its host environment. H. pylori UM067 is known to inhabit the gastric mucosa of various hosts, where it engages in complex interactions with the host's immune system and gastric environment.↵↵The microaerophilic nature of H. pylori UM067 indicates that it requires reduced levels of oxygen for growth, which is a characteristic adaptation that allows it to survive in the oxygen-limited niche of the stomach. This adaptation is crucial for its survival and potential colonization within the acidic gastric milieu. ↵↵Understanding H. pylori UM067's traits can provide insights into its role in the gastric ecosystem and its interactions with host physiology. The preference for a microaerophilic environment suggests that this bacterium may play a significant role in modulating the local oxygen levels within the gastric niche, potentially influencing both its own survival and the broader microbial community dynamics in the stomach. Such interactions may have implications for the health and disease states of the host, highlighting the importance of H. pylori UM067 in the context of gastric microbiota and host-microbe relationships." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1355529 AUSN00000000.1 Bac0010756 Helicobacter pylori UM084 "Helicobacter pylori UM084 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, indicating its adaptation to the warm environment of the host stomach. As a microaerophilic organism, H. pylori UM084 requires reduced oxygen levels for growth, which aligns with its habitat as a host-associated microbe, specifically within the gastric mucosa of mammals.↵↵The unique morphology and oxygen requirements of H. pylori UM084 suggest a specialized niche within its host, where it may play a role in the complex interactions of the gastric microbiome. Its adaptation to the harsh acidic conditions of the stomach, along with its specific temperature preference, highlights its evolutionary significance in colonizing and surviving within host gastric environments. Further investigation into the ecological role of H. pylori UM084 may provide insights into its interactions with the host immune system and other microbial inhabitants of the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1355530 AUSO00000000.1 Bac0010757 Sinorhizobium sp. GW3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. GW3 647869 AUSY00000000.1 Bac0010758 Sinorhizobium sp. GL28 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. GL28 1358418 AUSZ00000000.1 Bac0010759 Sinorhizobium fredii USDA 205 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 1230631 AUTC00000000.1 Bac0010760 Campylobacter jejuni K5 "Campylobacter jejuni K5 is a Gram-negative, spiral-shaped bacterium that typically occurs as singles or in chains. This microbe is classified as a microaerophile, indicating that it requires reduced levels of oxygen for optimal growth and survival. C. jejuni K5 is a heterotrophic organism, relying on organic compounds as its energy source, which facilitates its adaptability to various environments. ↵↵The optimal temperature for C. jejuni K5 is notably low, with an emphasis on growth conditions that may be conducive to cooler habitats. This characteristic suggests an ecological niche that could include environments where temperatures are moderated, potentially influencing its distribution and interactions within microbial communities. ↵↵Additionally, the ability of C. jejuni K5 to thrive in multiple habitats indicates a versatile adaptability, which may allow it to occupy diverse ecological roles. This flexibility could contribute to its persistence in various environments, making it an interesting subject for further research on microbial resilience and adaptability. Understanding its ecological implications can provide insights into the dynamics of microbial communities in cooler habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 1365662 AUUP00000000.1 Bac0010761 Geobacillus sp. A8 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. A8 1095383 AUXP00000000.1 Bac0010762 Photorhabdus temperata subsp. temperata M1021 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus temperata 1221520 AUXQ00000000.1 Bac0010763 Pseudoalteromonas luteoviolacea S4060-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 1365257 AUXX00000000.1 Bac0010764 Pseudoalteromonas luteoviolacea H33 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 1365251 AUXZ00000000.1 Bac0010765 Pseudoalteromonas luteoviolacea DSM 6061 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 1365250 AUYB00000000.1 Bac0010766 Lacticaseibacillus paracasei strain 5b "Lacticaseibacillus paracasei strain 5b is a Gram-positive, rod-shaped bacterium that typically occurs in chains. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to grow in both the presence and absence of oxygen. Lacticaseibacillus paracasei is known to inhabit various environments, indicating its versatility and adaptability to different ecological niches.↵↵The chain arrangement of this bacterium may enhance its survival and functional capabilities in diverse habitats, potentially influencing its interactions with other microbial communities. The facultative anaerobic nature of strain 5b suggests that it can efficiently utilize available resources, whether in oxygen-rich or oxygen-poor conditions, contributing to its ecological success. ↵↵Understanding the growth characteristics and ecological adaptability of Lacticaseibacillus paracasei strain 5b may provide insights into its potential applications in food fermentation processes and probiotic formulations, where its ability to thrive in varied conditions can be harnessed for beneficial outcomes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 AUYM00000000.1 Bac0010767 Streptococcus equinus JB1 "Streptococcus equinus JB1 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism. This species is characterized by its spherical morphology, which typically arranges itself in chains or clusters. As a facultative anaerobe, Streptococcus equinus JB1 has the metabolic flexibility to thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels in its ecological niche.↵↵The Gram-positive nature of this microbe indicates a thick peptidoglycan layer in its cell wall, which is a hallmark of the Streptococcus genus. This structural feature not only plays a role in maintaining the integrity of the cell but may also influence the organism's interactions with its environment, including its susceptibility to certain antibiotics and its ability to form biofilms.↵↵While specific ecological roles and pathogenic potential of Streptococcus equinus JB1 have not been detailed, the general traits of this microbe suggest it may inhabit diverse environments, potentially including the gastrointestinal tracts of various host organisms. Its ability to survive in both the presence and absence of oxygen suggests that it may play a role in nutrient cycling within these environments, contributing to the microbial dynamics of the gut microbiome or other habitats it occupies. Further investigation into its ecological roles could provide insights into its interactions with other microorganisms and its overall contribution to microbial community function." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe 1294274 AUZH00000000.1 Bac0010768 Lactiplantibacillus plantarum EGD-AQ4 "Lactiplantibacillus plantarum EGD-AQ4 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits a facultative anaerobic metabolism. This microorganism thrives optimally at a temperature of 25.0°C and is found in diverse habitats, indicating its versatility and adaptability in various environmental conditions.↵↵As a member of the Lactobacillus genus, L. plantarum EGD-AQ4 is known for its potential in fermentation processes and is commonly associated with plant-based materials. Its facultative anaerobic nature allows it to survive and grow in both aerobic and anaerobic environments, making it an important player in ecosystems where oxygen levels fluctuate. This adaptability may contribute to its presence in a wide range of habitats, including fermented foods, plant matter, and the gastrointestinal tracts of various organisms.↵↵The unique trait of forming chains may influence its interactions within microbial communities, potentially enhancing its survival and functional capabilities in complex ecological niches. This chain formation could facilitate cooperative behavior among cells, such as nutrient exchange or protection against adverse conditions, highlighting the ecological significance of L. plantarum EGD-AQ4 in its natural environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1382301 AVAQ00000000.1 Bac0010769 Pontibacillus yanchengensis Y32 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pontibacillus Pontibacillus yanchengensis 1385514 AVBF00000000.1 Bac0010770 Pontibacillus chungwhensis BH030062 "Pontibacillus chungwhensis BH030062 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 32.0°C. As an aerobic organism, it requires oxygen for its metabolic processes, suggesting a potential adaptation to environments where oxygen is readily available.↵↵The rod shape of P. chungwhensis BH030062 is characteristic of many members within its genus, which may contribute to its ecological versatility. The ability to form spores allows this microbe to endure unfavorable environmental conditions, enhancing its survival and persistence in various habitats. This trait is particularly relevant in fluctuating environments, where nutrient availability or temperature may vary.↵↵The optimal growth temperature of 32.0°C indicates a preference for moderate thermal conditions, which may reflect its natural habitat, possibly in soil or decaying organic matter, where temperatures generally range within this threshold. The aerobic nature of the organism underscores its reliance on oxygen, which could influence its interactions with other microbial communities present in its environment.↵↵In summary, P. chungwhensis BH030062 exemplifies traits that enable it to thrive in aerobic, moderately warm environments, suggesting a role in nutrient cycling processes within ecosystems where such conditions prevail. Its spore-forming ability may allow it to endure periods of environmental stress, thus contributing to its ecological resilience." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pontibacillus Pontibacillus chungwhensis Gram-positive rod motile aerobic 32 mesophilic spore-forming 1385513 AVBG00000000.1 Bac0010771 Flavobacterium cauense R2A-7 FCR2A7T_39 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium cauense 510946 AVBI00000000.1 Bac0010772 Arenimonas malthae CC-JY-1 "Arenimonas malthae CC-JY-1 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism. This microorganism thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic conditions. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer, which is typical of this group, and is likely to influence its response to environmental stresses and antibiotic susceptibility.↵↵The aerobic nature of Arenimonas malthae CC-JY-1 suggests that it requires oxygen for growth and energy production, implicating it in processes such as aerobic respiration. Given its optimal growth temperature, this bacterium may be well-suited to environments that experience moderate thermal conditions, potentially correlating with habitats such as soil or aquatic systems that maintain stable temperatures around 29.0°C.↵↵Understanding the physiological traits of Arenimonas malthae CC-JY-1 can provide insights into its ecological role, particularly in nutrient cycling and its interactions with other microbial communities in its habitat. The preference for aerobic conditions may position this organism as a contributor to the breakdown of organic matter in oxygen-rich environments, thereby playing a significant role in maintaining ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Arenimonas Arenimonas malthae Gram-negative rod aerobic 29 mesophilic 1384054 AVCH00000000.1 Bac0010773 Arenimonas donghaensis DSM 18148 = HO3-R19 "Arenimonas donghaensis DSM 18148 (also referred to as HO3-R19) is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This microorganism thrives optimally at a temperature of 29.0°C, suggesting a preference for moderately warm environments. The Gram-negative nature of A. donghaensis is indicative of its unique cell wall structure, which can influence its interactions with other microorganisms and its environmental resilience.↵↵As an aerobic organism, A. donghaensis relies on oxygen for its metabolic processes, which may confer advantages in oxygen-rich habitats, potentially enabling it to exploit various ecological niches. The lack of sporulation indicates that this species may not have developed mechanisms for long-term survival under extreme conditions, differing from many other bacterial taxa that employ sporulation as a survival strategy.↵↵The overall characteristics of A. donghaensis suggest that it may play a role in specific ecological contexts, possibly contributing to the microbial diversity in marine or nutrient-rich environments, where its growth conditions are met. Further studies could elucidate its potential interactions with other microbial communities and its role in biogeochemical cycles, highlighting the importance of such organisms in their respective ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Arenimonas Arenimonas donghaensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 1121014 AVCJ00000000.1 Bac0010774 Arenimonas metalli CF5-1 "Arenimonas metalli CF5-1 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits an optimal growth temperature of 29.0°C and requires oxygen for its metabolic processes, classifying it as an aerobic organism. This microbe's rod shape and aerobic nature suggest it may thrive in environments rich in organic materials and oxygen, potentially influencing its ecological niche within various habitats.↵↵The Gram-negative cell wall structure of Arenimonas metalli CF5-1 may confer specific advantages, such as resistance to certain antibiotics and the ability to interact with other microorganisms in its environment. Its non-spore-forming characteristic indicates that it relies on other survival mechanisms for endurance in fluctuating conditions, possibly adapting to varying nutrient availability or environmental stresses. ↵↵Given its optimal temperature of 29.0°C, Arenimonas metalli CF5-1 may be particularly well-suited for life in moderately warm environments, which could include soils or aquatic systems that experience such thermal conditions. This temperature range may also facilitate its interactions with other microbial communities, contributing to nutrient cycling and organic matter decomposition in its ecosystem. Further studies are warranted to explore its specific ecological roles and contributions to biogeochemical processes in its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Arenimonas Arenimonas metalli Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1384056 AVCK00000000.1 Bac0010775 Elizabethkingia anophelis 502 "Elizabethkingia anophelis 502 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and utilizes organic compounds as a chemoheterotrophic energy source. This microbe is characterized by its nonsporulating nature, which suggests it may rely on alternative mechanisms for survival in diverse environments. ↵↵E. anophelis 502 has been isolated from various habitats, highlighting its adaptability and potential for colonization in a range of ecological niches. The organism's aerobic requirement indicates its dependence on oxygen for growth, which may limit its distribution in anaerobic environments but also enables it to thrive in oxygen-rich habitats.↵↵The capacity of E. anophelis to utilize a variety of organic substrates could provide insights into its ecological role, particularly in biogeochemical cycles where organic matter is being decomposed. Its presence in multiple habitats suggests a versatile metabolic repertoire, allowing it to contribute to nutrient cycling and potentially influencing microbial community dynamics. Understanding the functional capabilities of E. anophelis 502 may shed light on its interactions within microbial ecosystems and its responses to environmental changes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia anophelis Negative Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1355388 AVCQ00000000.1 Bac0010776 Corynebacterium pseudodiphtheriticum 090104 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudodiphtheriticum 1381111 AVFF00000000.1 Bac0010777 Thiohalocapsa sp. PB-PSB1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thiohalocapsa Thiohalocapsa sp. PB-PSB1 1385625 AVFR00000000.1 Bac0010778 Paraclostridium bifermentans ATCC 19299 "Paraclostridium bifermentans ATCC 19299 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive in anaerobic environments. This microbe is classified as a chemoheterotroph, utilizing organic compounds as its energy source, and demonstrates optimal growth at a temperature of 37.0°C, which aligns with the physiological conditions found in warm-blooded animals.↵↵Typically residing in the intestinal microflora of various animal hosts, P. bifermentans contributes to the complex ecosystem of gut microbiota, playing a role in fermentation processes within the digestive tract. Its anaerobic requirement highlights the significance of oxygen-limited environments for its survival and metabolic activities. Furthermore, the sporulating ability of this organism suggests an adaptation mechanism for enduring unfavorable conditions, allowing it to persist in the intestinal environment despite fluctuations in local conditions.↵↵The presence of P. bifermentans in the gut microbiome raises intriguing questions about its interactions with other microbial species and its potential roles in digestive health and disease. Understanding its specific functions and contributions within the intestinal ecosystem could provide insights into the dynamics of gut microbiota and their implications for host health." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium bifermentans Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Sporulating 1233170 AVNB00000000.1 Bac0010779 Helicobacter pylori SouthAfrica50 "Helicobacter pylori SouthAfrica50 is a Gram-negative, spiral-shaped bacterium characterized by its microaerophilic oxygen requirement and solitary cell arrangement. This strain thrives optimally at 37.0°C, aligning with the average human body temperature, which suggests its adaptation to a host-associated habitat. ↵↵H. pylori is well-known for colonizing the gastric mucosa of humans, where it engages in complex interactions with the host's immune system. The microaerophilic nature of H. pylori indicates its preference for environments with reduced oxygen levels, which is typical of the gastric niche. This ecological adaptation may also influence its survival strategies and metabolic pathways, as the bacterium needs to balance its respiratory demands under low-oxygen conditions.↵↵The isolation of the SouthAfrica50 strain highlights the geographical diversity of H. pylori, with implications for understanding the genetic variation and potential environmental adaptations of this microbe in different populations. This strain could provide valuable insights into the evolutionary dynamics of H. pylori and its interactions with various hosts, particularly in the context of differing dietary and environmental factors prevalent in South Africa. Understanding such diversity may contribute to the broader knowledge of H. pylori's role in human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1352357 AVNI00000000.1 Bac0010780 Alcaligenes sp. EGD-AK7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes sp. EGD-AK7 aerobic 1386079 AVOG00000000.2 Bac0010781 Pseudomonas piscis strain CMAA1215 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas piscis 2614538 AVOY00000000.1 Bac0010782 Arthrobacter sp. AK-YN10 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. AK-YN10 1349820 AVPD00000000.2 Bac0010783 Pontibacillus halophilus JSM 076056 = DSM 19796 strain JSM 076056 "Pontibacillus halophilus JSM 076056 (also known as DSM 19796) is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and thrive under aerobic conditions. This strain exhibits optimal growth at a temperature of 29.0 °C, suggesting a preference for moderately warm environments. As a spore-forming organism, P. halophilus possesses the capacity for resilience and survival under potentially adverse conditions, which is a notable trait among many soil-dwelling and halophilic microorganisms.↵↵While the specific ecological niche of P. halophilus has not been explicitly detailed, its halophilic nature implies a potential adaptation to saline environments. The capacity for aerobic metabolism may further enhance its role in biogeochemical cycles, particularly in marine or coastal ecosystems where oxygen is available. This combination of traits positions P. halophilus as a potentially significant player in nutrient cycling within its habitat, contributing to the microbial diversity and function of saline environments. Understanding the ecological role of this bacterium may provide insights into the dynamics of microbial communities in similar ecological niches and their responses to environmental changes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pontibacillus Pontibacillus halophilus Gram-positive rod motile aerobic 29 mesophilic spore-forming 516704 AVPE00000000.1 Bac0010784 Pontibacillus litoralis JSM 072002 "Pontibacillus litoralis JSM 072002 is a Gram-positive, rod-shaped bacterium that is capable of sporulation, allowing it to survive in various environmental conditions. This microbe demonstrates facultative aerobic and anaerobic growth, indicating its versatility in utilizing both oxygen-rich and oxygen-poor environments for cellular respiration. The optimal growth temperature for P. litoralis JSM 072002 is 37.0°C, suggesting that it thrives at a temperature commonly encountered in natural and human-associated ecosystems.↵↵The ability to form spores is particularly notable, as it enables the bacterium to endure adverse conditions such as nutrient depletion and desiccation, which could otherwise limit its survival. This trait may provide insights into the ecological role of P. litoralis JSM 072002 in its native habitat, potentially allowing it to colonize and persist in dynamic environments where competition with other microorganisms is prevalent.↵↵Overall, the combination of its Gram-positive nature, rod-shaped morphology, and facultative growth capabilities underline the adaptability of Pontibacillus litoralis JSM 072002. This adaptability may position it as a significant player in nutrient cycling processes and microbial community dynamics in its ecological niche." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pontibacillus Pontibacillus litoralis Gram-positive rod motile facultative aerobe/anaerobe 37 mesophilic spore-forming 1385512 AVPG00000000.1 Bac0010785 Pseudogulbenkiania ferrooxidans EGD-HP2 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Pseudogulbenkiania Pseudogulbenkiania ferrooxidans 1388764 AVPH00000000.1 Bac0010786 Lysobacter concretionis Ko07 = DSM 16239 strain Ko07 "Lysobacter concretionis Ko07, designated as DSM 16239, is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 29.0°C. This strain, part of the Lysobacter genus, is characterized by its unique morphological and physiological traits, which contribute to its ecological niche.↵↵As a member of the broader Lysobacter genus, L. concretionis Ko07 is notable for its potential role in soil microbiomes, where it may participate in the degradation of organic matter and contribute to nutrient cycling. The aerobic nature of this bacterium suggests it is well-adapted to oxygen-rich environments, which may enhance its survival in various ecological settings, such as well-aerated soils or decaying plant materials.↵↵Understanding the specific environmental preferences and metabolic capabilities of L. concretionis Ko07 can provide insights into its ecological functions, particularly in relation to its interactions with other soil microorganisms and its contributions to biogeochemical processes. Further studies may elucidate the precise roles this strain plays in its natural habitat, potentially revealing novel applications in biotechnology, such as bioremediation or sustainable agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Novilysobacter Novilysobacter concretionis Gram-negative rod aerobic 29 mesophilic 262325 AVPS00000000.1 Bac0010787 Lysobacter arseniciresistens ZS79 "Lysobacter arseniciresistens ZS79 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C and exhibits aerobic respiration. This organism is notable for its capacity to resist arsenic, an attribute that suggests potential bioremediation applications in environments contaminated with this toxic metalloid. ↵↵As a member of the Lysobacter genus, L. arseniciresistens ZS79 may utilize a variety of organic compounds as carbon sources, which aligns with the metabolic diversity typically observed in this group. The aerobic nature of this microbe indicates its reliance on oxygen for growth, emphasizing its potential role in oxygen-rich environments, such as soil or water bodies where organic matter decomposition occurs.↵↵The ability of L. arseniciresistens ZS79 to withstand arsenic exposure not only highlights its unique biochemical capabilities but also suggests that it might play a role in the cycling of arsenic in ecosystems affected by anthropogenic activities. Further understanding of its metabolic pathways could illuminate strategies for bioremediation, potentially leading to innovative methods for mitigating arsenic pollution in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Novilysobacter Novilysobacter arseniciresistens Gram-negative rod aerobic 29 mesophilic 913325 AVPT00000000.1 Bac0010788 Lysobacter daejeonensis GH1-9 "Lysobacter daejeonensis GH1-9 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and has an optimal growth temperature of 29.0°C. This microbe is non-spore-forming, which suggests that it relies on vegetative propagation for reproduction and survival in its environment. ↵↵The Gram-negative nature of Lysobacter daejeonensis GH1-9 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a characteristic that often influences interactions with other microorganisms and hosts. The rod shape may facilitate motility and nutrient uptake in its natural habitat, contributing to its adaptability in various ecological niches.↵↵Given the specific growth temperature preference, Lysobacter daejeonensis GH1-9 may be well-suited for environments that do not experience extreme temperature fluctuations, potentially allowing it to occupy specific ecological roles in temperate regions. The aerobic requirement further emphasizes its ecological niche, suggesting an association with oxygen-rich environments, which could include soil or aquatic ecosystems where organic matter decomposition occurs. ↵↵Overall, the traits of Lysobacter daejeonensis GH1-9 indicate that it may play a significant role in nutrient cycling within its habitat, contributing to the breakdown of complex organic substances and influencing microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Aerolutibacter Aerolutibacter daejeonensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1385517 AVPU00000000.1 Bac0010789 Bifidobacterium breve MCC 1114 M1114_033 "Bifidobacterium breve MCC 1114 M1114_033 is a Gram-positive anaerobic bacterium primarily found in the gastrointestinal tract, specifically within the microbiota of healthy newborns and infants. This species is notably prevalent in human breast milk, which serves as a critical habitat for its growth and propagation. Bifidobacterium breve plays a significant role in shaping the gut microbiota of infants, contributing to their digestive health and potentially influencing immune system development.↵↵As an anaerobe, Bifidobacterium breve thrives in environments devoid of oxygen, making it particularly well-suited to the anaerobic conditions of the intestines. Its presence in the infant gut microbiota is vital, as it aids in the fermentation of dietary fibers and the production of short-chain fatty acids, which are essential for maintaining gut health. The ability of Bifidobacterium breve to colonize the infant intestine highlights its importance in early microbial development and suggests a beneficial role in establishing a balanced gut microbiome during the formative stages of life.↵↵Overall, the association of Bifidobacterium breve with breast milk and its predominance in the infant gut underscore its potential contributions to early-life nutrition and the establishment of a healthy gut microbiome, which may have lasting effects on an individual's health trajectory." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 AVQC00000000.1 Bac0010790 Pseudomonas simiae strain EGD-AQ6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas simiae 321846 AVQG00000000.1 Bac0010791 Snodgrassella alvi SCGC AB-598-J21 SCG598J21_12956 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella alvi 1196083 AVQL00000000.1 Bac0010792 Mannheimia granulomatis strain MH-PKL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia granulomatis 85402 AVSP00000000.1 Bac0010793 Escherichia coli HVH 87 (4-5977630) "Escherichia coli HVH 87 (4-5977630) is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0 °C, making it well-suited for growth in warm-blooded hosts, where it is primarily found in a host-associated habitat. As a facultative anaerobe, E. coli HVH 87 can adapt to varying oxygen levels, allowing it to survive in both aerobic and anaerobic environments.↵↵The ability of E. coli HVH 87 to maintain growth in diverse oxygen conditions and its preference for a host-associated habitat suggest a potential role in the complex microbial ecosystems of the gastrointestinal tract. This adaptability may contribute to its interactions with the host's immune system and its overall microbial community dynamics. Understanding the specific ecological niche of E. coli HVH 87 can provide insights into its metabolic capabilities and its potential influence on host health and disease. Further research may elucidate the specific interactions this strain has within its host environment, contributing to our broader understanding of microbial ecology and host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1281024 AVVI00000000.1 Bac0010794 Escherichia coli UMEA 3162-1 "Escherichia coli UMEA 3162-1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, which indicates its ability to thrive in both aerobic and anaerobic environments. E. coli UMEA 3162-1 has an optimal growth temperature of 37.0°C, aligning with the physiological temperature of many mammalian hosts, suggesting its adaptation to host-associated habitats.↵↵As a member of the Enterobacteriaceae family, E. coli is commonly found in the intestines of warm-blooded organisms, where it plays a significant role in digestion and nutrient absorption. The facultative anaerobic nature of this strain allows it to efficiently utilize available oxygen while also having the capacity to ferment substrates in its absence, which is advantageous for survival in diverse environments within the host.↵↵Understanding the capabilities of E. coli UMEA 3162-1 sheds light on the broader ecological interactions of bacteria in host-associated environments. This strain may contribute to the complex microbial communities present in the gastrointestinal tract, influencing nutrient cycling and host health through its metabolic activities. Further exploration of its interactions with other gut microbiota could provide insights into the dynamics of microbial symbiosis and the overall functioning of the host's microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1281200 AWBU00000000.1 Bac0010795 Escherichia coli UMEA 3200-1 "Escherichia coli UMEA 3200-1 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain thrives optimally at 37.0 degrees Celsius, a temperature that aligns with the physiological conditions of many warm-blooded hosts. E. coli UMEA 3200-1 is classified as a facultative anaerobe, indicating its versatility in utilizing both aerobic and anaerobic metabolic pathways, which allows it to adapt to varying oxygen levels within its host-associated habitat.↵↵Being host-associated suggests that E. coli UMEA 3200-1 likely resides within the gastrointestinal tracts of its hosts, where it may play a role in nutrient processing or maintaining a balanced microbiota. The ability of this strain to exist in pairs or singles could be reflective of its adaptive strategies for survival in fluctuating environments, allowing for efficient colonization and interaction with host tissues. ↵↵This adaptability to different oxygen conditions enhances its survival in diverse niches within host organisms, highlighting the ecological significance of E. coli UMEA 3200-1 in microbial communities. Overall, the traits of E. coli UMEA 3200-1 underscore its potential role in contributing to the complex interactions within host ecosystems, particularly in the context of nutrient metabolism and microbial homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1281213 AWCH00000000.1 Bac0010796 Escherichia coli UMEA 3212-1 "Escherichia coli UMEA 3212-1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, making it versatile in various habitats. E. coli UMEA 3212-1 has an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting a close association with such environments.↵↵Given its host-associated habitat, E. coli UMEA 3212-1 may play a role in the complex microbial communities found within the gastrointestinal tracts of mammals, where it could contribute to various metabolic processes. Its adaptability to both oxygen-rich and oxygen-poor conditions may enhance its survival and functionality within these dynamic ecosystems. The ability to form pairs and single cells aids its colonization and interaction with other microbial species, potentially influencing community structure and function in its specific habitat. Understanding the traits of E. coli UMEA 3212-1 can provide insights into the ecological roles of E. coli strains in host-associated microbiomes, particularly in terms of their adaptability and interactions with host metabolism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1281218 AWCM00000000.1 Bac0010797 Hoylesella pleuritidis F0068 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella pleuritidis 1081904 AWET00000000.1 Bac0010798 Segatella baroniae F0067 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella baroniae 1115809 AWEY00000000.1 Bac0010799 Hyphomonas sp. CY54-11-8 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas sp. CY54-11-8 1280944 AWFD00000000.1 Bac0010800 Hyphomonas beringensis strain 25B14_1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas beringensis 1280946 AWFF00000000.1 Bac0010801 Hyphomonas sp. L-53-1-40 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas sp. L-53-1-40 1207058 AWFI00000000.1 Bac0010802 Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 strain DSM Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis benevestitus 347481 AWGB00000000.1 Bac0010803 Francisella sp. W12-1067 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Allofrancisella Allofrancisella heilbronnii 1385420 AWHF00000000.1 Bac0010804 Comamonas testosteroni strain JL40 "Comamonas testosteroni strain JL40 is a Gram-negative, rod-shaped bacterium that is categorized as a nonsporulating aerobe. This strain is noted for its ability to thrive in multiple habitats, suggesting a degree of ecological versatility. Its aerobic metabolism indicates that it requires oxygen for growth, which may influence its distribution in various environments where oxygen levels are adequate.↵↵The nonsporulating characteristic of C. testosteroni strain JL40 implies that it does not produce spores as a means of survival under unfavorable conditions. This trait may limit its resilience compared to sporulating bacteria, but it also indicates a reliance on consistent environmental conditions for survival. The diverse habitats in which this strain is found could include soil, water, or association with other organisms, although specific habitat details are not provided.↵↵The metabolic capabilities of C. testosteroni strains, including the ability to utilize various substrates, have been studied in relation to bioremediation processes. This particular strain may play a role in the degradation of environmental pollutants, reflecting an ecological function that contributes to ecosystem health. Thus, Comamonas testosteroni strain JL40 exemplifies a microbe with potential applications in bioremediation, highlighting the importance of understanding microbial traits for environmental management strategies." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni Negative Rod No 1 2 Aerobe Mesophilic Multiple Free living Nonsporulating 285 AWOR00000000.1 Bac0010805 Intrasporangium chromatireducens Q5-1 "Intrasporangium chromatireducens Q5-1 is a Gram-positive bacterium recognized for its aerobic metabolism and optimal growth temperature of 37.0°C. This organism is characterized by its ability to thrive in oxygen-rich environments, which suggests a well-developed respiratory system that may facilitate the utilization of various organic substrates. The Gram-positive nature of I. chromatireducens Q5-1 indicates a thick peptidoglycan layer in its cell wall, which may contribute to its stability and resilience under aerobic conditions.↵↵While specific metabolic pathways and ecological roles have not been detailed, the growth conditions of this strain imply a potential for involvement in biogeochemical cycles, particularly in environments where aerobic decomposition of organic matter occurs. The aerobic requirement suggests that I. chromatireducens Q5-1 may play a role in nutrient cycling, potentially influencing the availability of carbon and other elements in its habitat. ↵↵The ability of this microbe to thrive at 37.0°C may also indicate its adaptation to warm environments, which could include human-associated or thermophilic ecosystems. Overall, Intrasporangium chromatireducens Q5-1 presents an interesting subject for further study regarding its metabolic capabilities and ecological contributions, particularly in aerobic environments where organic matter decomposition is critical for maintaining ecosystem health and function." Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Intrasporangium Intrasporangium chromatireducens Gram-positive non-motile aerobic 37 mesophilic 584657 AWQS00000000.1 Bac0010806 Rhodobacteraceae bacterium PD-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium PD-2 1169855 AWRV00000000.2 Bac0010807 Intrasporangium oryzae NRRL B-24470 "Intrasporangium oryzae NRRL B-24470 is a Gram-positive, aerobic rod-shaped bacterium that thrives at an optimal temperature of 25.0°C. This species exhibits the distinctive characteristics of the genus Intrasporangium, known for its unique morphological features and ecological versatility. As a Gram-positive organism, it possesses a thick peptidoglycan layer in its cell wall, which is indicative of its resistance to certain environmental stresses and its capacity for survival in diverse habitats.↵↵The aerobic nature of Intrasporangium oryzae suggests that it relies on oxygen for its metabolic processes, which may include the oxidation of organic compounds. This trait is significant for its potential role in various biogeochemical cycles, particularly in environments where organic matter decomposition occurs. The rod shape of this bacterium may enhance its motility and surface area for nutrient uptake, further contributing to its adaptability and ecological niche.↵↵Overall, Intrasporangium oryzae NRRL B-24470 represents a fascinating example of Actinobacteria that may play a role in soil health and nutrient cycling, highlighting the importance of such microorganisms in maintaining ecosystem balance. Its specific adaptations to aerobic environments may also provide insights into the metabolic pathways utilized by similar Gram-positive bacteria in competitive ecological settings." Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Intrasporangium Intrasporangium oryzae Gram-positive rod aerobic 25 mesophilic 1386089 AWSA00000000.1 Bac0010808 Actinomyces graevenitzii F0530 "Actinomyces graevenitzii F0530 is a Gram-positive bacterium characterized as a facultative anaerobe. This microbe exhibits the typical morphology associated with the Actinomyces genus, displaying filamentous growth patterns that are often observed in related species. The Gram-positive nature of A. graevenitzii F0530 suggests a robust peptidoglycan layer in its cell wall, which is a defining feature of this group and contributes to its survival in various environments.↵↵As a facultative anaerobe, A. graevenitzii F0530 possesses the metabolic versatility to thrive in both aerobic and anaerobic conditions. This adaptability may allow it to occupy diverse ecological niches, potentially facilitating interactions with other microbial communities in its habitat. Understanding the metabolic pathways utilized by A. graevenitzii F0530 under differing oxygen conditions could offer insights into its ecological role and interactions within microbial consortia.↵↵Furthermore, the ability of this organism to adapt to fluctuating oxygen levels may be advantageous in complex environments such as the human oral cavity or soil ecosystems, where oxygen availability can vary significantly. Thus, A. graevenitzii F0530 exemplifies the ecological flexibility that is often observed in Actinomyces species, allowing it to contribute to the dynamics of microbial communities in various environments." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces graevenitzii Positive Facultative anaerobe 1321817 AWSC00000000.1 Bac0010809 Actinomyces johnsonii F0542 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces johnsonii anaerobic 1321818 AWSE00000000.1 Bac0010810 Actinomyces sp. oral taxon 172 str. F0311 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 172 1321775 AWSF00000000.1 Bac0010811 Actinomyces sp. oral taxon 877 str. F0543 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 877 1227264 AWSG00000000.1 Bac0010812 Alloscardovia omnicolens F0580 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Alloscardovia Alloscardovia omnicolens 1321816 AWSI00000000.1 Bac0010813 Aneurinibacillus aneurinilyticus ATCC 12856 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Aneurinibacillus Aneurinibacillus aneurinilyticus 649747 AWSJ00000000.1 Bac0010814 Pseudomonas taeanensis MS-3 "Pseudomonas taeanensis MS-3 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This organism is part of the diverse Pseudomonas genus, which is known for its metabolic versatility and ability to adapt to various environmental conditions. The Gram-negative cell wall structure of Pseudomonas taeanensis MS-3 is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in competitive microbial communities.↵↵The aerobic nature of Pseudomonas taeanensis MS-3 suggests that it requires oxygen for its metabolic processes, likely utilizing aerobic respiration to generate energy. This trait may enable the microbe to occupy niches where oxygen is readily available, potentially influencing its ecological interactions and roles in biogeochemical cycles. ↵↵In terms of ecological insight, the preference of Pseudomonas taeanensis MS-3 for a 25.0°C environment may indicate its adaptation to temperate ecosystems, which could be relevant for understanding its interactions with other microorganisms and its role in nutrient cycling within those habitats. The ability to thrive in aerobic conditions underscores the importance of oxygen availability in shaping the distribution and ecological function of this species within its native environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas taeanensis Gram-negative rod aerobic 25 mesophilic 1395571 AWSQ00000000.1 Bac0010815 [Clostridium] symbiosum ATCC 14940 "[Clostridium] symbiosum ATCC 14940 is a Gram-negative bacterium that belongs to the Clostridia class, which is primarily characterized by its anaerobic metabolism. This organism is notable for its role in various microbial ecosystems, particularly in symbiotic relationships with other organisms. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait that may influence its interactions within its ecological niche.↵↵The metabolism of [C. symbiosum] is expected to be anaerobic, aligning with the general metabolic characteristics of clostridia, which typically thrive in low-oxygen environments. While specific metabolic pathways and substrates utilized by this strain are not detailed here, Clostridium species are known for their ability to ferment a variety of organic compounds, potentially contributing to nutrient cycling in their habitats.↵↵The strain ATCC 14940 is preserved in culture collections, providing a valuable resource for research into its physiological and ecological properties. Understanding the functional roles of [C. symbiosum] in microbial communities may provide insights into the complex interactions that underpin symbiotic relationships in various environments, including the gut microbiomes of host organisms. This highlights the importance of anaerobic bacteria like [C. symbiosum] in maintaining ecological balance and promoting health in their respective ecosystems." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Otoolea [Clostridium] symbiosum negative 411472 AWSU00000000.1 Bac0010816 Blautia sp. KLE 1732 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. KLE 1732 1226324 AWSY00000000.1 Bac0010817 Comamonas thiooxydans strain DF2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas thiooxydans 363952 AWTP00000000.1 Bac0010818 Paucilactobacillus wasatchensis strain WDC04 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus wasatchensis 1335616 AWTT00000000.1 Bac0010819 Porphyromonas gingivalis F0570 "Porphyromonas gingivalis F0570 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is primarily associated with host organisms, suggesting its ecological niche is closely tied to the microbiomes of mammals, particularly in the oral cavity.↵↵As a member of the Porphyromonas genus, P. gingivalis F0570 is adapted to the anaerobic conditions commonly found in periodontal pockets and other host-associated habitats. Its rod shape may facilitate motility in viscous environments, enhancing its ability to colonize and persist within complex microbial communities. The anaerobic oxygen requirement indicates that P. gingivalis F0570 likely engages in fermentation or other anaerobic metabolic pathways, which could play a role in its interactions with other microbes in the host environment.↵↵The habitat preference of P. gingivalis F0570 underscores its potential significance in the microbial ecology of the oral cavity. This bacterium may contribute to the maintenance of a delicate balance within the oral microbiome, wherein fluctuations in its population could have implications for the health of the host. Understanding the specific role of P. gingivalis F0570 within these communities could provide insights into its interactions with other microbial species and its potential impact on oral health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1227271 AWUW00000000.1 Bac0010820 Porphyromonas sp. oral taxon 278 str. W7784 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 278 1227272 AWUX00000000.1 Bac0010821 Prevotella sp. F0091 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. F0091 1227276 AWUZ00000000.1 Bac0010822 Streptococcus sobrinus W1703 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sobrinus microaerophile 1227275 AWVA00000000.1 Bac0010823 Selenomonas sp. oral taxon 892 str. F0426 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 892 1321786 AWVG00000000.1 Bac0010824 Faecalitalea cylindroides ATCC 27803 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Faecalitalea Faecalitalea cylindroides 649755 AWVI00000000.1 Bac0010825 Eubacterium ramulus ATCC 29099 "Eubacterium ramulus ATCC 29099 is a Gram-positive anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. As a member of the Eubacterium genus, this organism exhibits distinct structural and metabolic traits that facilitate its survival and proliferation in anaerobic conditions. The Gram-positive nature of E. ramulus indicates a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria in this classification, potentially contributing to its resilience in specific ecological niches.↵↵Eubacterium ramulus is typically isolated from various anaerobic environments, including the human gastrointestinal tract, where it may play a role in the complex microbial ecosystem. The anaerobic requirement of this species suggests its adaptation to environments where oxygen is limited, which could influence its interactions with other microbial inhabitants and its overall contribution to metabolic processes, including fermentation.↵↵The understanding of E. ramulus and its traits is crucial for exploring its potential roles in health and disease, particularly in the context of gut microbiota. Given the importance of anaerobic bacteria in maintaining gut homeostasis and their involvement in metabolic pathways, Eubacterium ramulus may serve as an indicator of microbial diversity and stability within anaerobic habitats. Further studies on this organism could provide insights into its functional contributions to gut ecology and its potential implications for host health." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ramulus Positive Anaerobe 1256908 AWVJ00000000.1 Bac0010826 Leifsonia aquatica ATCC 14665 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia aquatica aerobic 29 mesophilic 1358026 AWVQ00000000.1 Bac0010827 Mitsuokella sp. oral taxon 131 str. W9106 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Mitsuokella Mitsuokella sp. oral taxon 131 1321781 AWVT00000000.1 Bac0010828 Oribacterium sp. oral taxon 078 str. F0263 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Oribacterium Oribacterium sp. oral taxon 078 1321782 AWVU00000000.1 Bac0010829 Ligilactobacillus equi DPC 6820 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus equi 1392007 AWWH00000000.1 Bac0010830 Megasphaera vaginalis (ex Srinivasan et al. 2021) strain BV3C16-1 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera vaginalis (ex Srinivasan et al. 2021) 1111454 AWXA00000000.1 Bac0010831 Proteus hauseri ZMd44 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus hauseri 1312367 AWXP00000000.1 Bac0010832 Rhodonellum psychrophilum GCM71 = DSM 17998 strain GCM71 EFN26GC9 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Rhodonellum Rhodonellum psychrophilum 336828 AWXR00000000.1 Bac0010833 Lutibaculum baratangense AMV1 "Lutibaculum baratangense AMV1 is a Gram-negative, ovoid-shaped bacterium that thrives optimally at 32.0°C and exhibits an aerobic metabolism. This microbe is notable for its specific morphological characteristics and growth requirements, which suggest adaptations to its environmental niche. The Gram-negative cell wall structure is indicative of its potential resilience in various ecological contexts, as such bacteria often possess mechanisms to endure environmental stresses. ↵↵Lutibaculum baratangense AMV1's optimal growth temperature of 32.0°C implies a preference for moderately warm habitats, which may influence its distribution and interactions within microbial communities. The aerobic nature of this organism suggests that it relies on oxygen for its metabolic processes, potentially positioning it as a key player in nutrient cycling in oxygen-rich environments.↵↵Further investigations into its ecological role could reveal the contributions of Lutibaculum baratangense AMV1 to biogeochemical processes, particularly in habitats where aerobic conditions prevail. Understanding these interactions may provide insights into the broader implications of its metabolic activities within microbial ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Tepidamorphaceae Lutibaculum Lutibaculum baratangense Gram-negative ovoid aerobic 32 mesophilic 631454 AWXZ00000000.1 Bac0010834 Xylella fastidiosa 32 "Xylella fastidiosa 32 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates an aerobic metabolism. This microbe thrives optimally at a temperature of 26.0°C, suggesting a preference for moderate environmental conditions. Xylella fastidiosa 32 is host-associated, indicating that it is primarily found in association with specific hosts rather than in free-living environments.↵↵The aerobic nature of this bacterium implies that it requires oxygen for its metabolic processes, which may influence its distribution and ecological interactions within host organisms. The host-associated habitat of Xylella fastidiosa 32 suggests potential dependencies on host physiological conditions for survival and growth, which may include interactions with host immune responses or nutrient availability.↵↵Understanding the unique traits of Xylella fastidiosa 32 can provide insights into its ecological dynamics, particularly in the context of its relationships with host plants. The bacterium's preference for moderate temperatures and aerobic conditions may also reflect its adaptation to specific ecological niches, potentially influencing its geographical distribution and interactions within plant communities. Further studies are warranted to explore the implications of these traits on its ecological roles and potential impacts on plant health." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xylella Xylella fastidiosa Negative Rod No 1 2 Aerobe 26 Mesophilic HostAssociated Free living Singles 1214121 AWYH00000000.1 Bac0010835 Marinobacter sp. C1S70 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. C1S70 1396859 AXBW00000000.1 Bac0010836 Labrenzia sp. C1B10 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Labrenzia Labrenzia sp. C1B10 1397530 AXBY00000000.1 Bac0010837 Halomonas sp. PBN3 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. PBN3 1397528 AXCA00000000.1 Bac0010838 Marinobacter sp. EVN1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. EVN1 1397532 AXCB00000000.1 Bac0010839 Marinobacter sp. EN3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. EN3 1397533 AXCC00000000.1 Bac0010840 Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Actinotalea Actinotalea fermentans 29 mesophilic 862422 AXCX00000000.1 Bac0010841 Cellulomonas carbonis T26 "Cellulomonas carbonis T26 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 29.0°C. This species is part of the genus Cellulomonas, which is known for its capacity to degrade cellulose, a key component of plant biomass. The Gram-positive nature of C. carbonis T26 suggests a thick peptidoglycan layer in its cell wall, a common feature among bacteria in this classification, which may contribute to its survival in various environmental conditions.↵↵As an aerobic organism, C. carbonis T26 requires oxygen for its metabolic processes, which aligns with its ecological role in the decomposition of organic materials in oxygen-rich environments. This bacterium potentially plays an essential role in nutrient cycling, particularly in the breakdown of cellulose from plant materials, thereby contributing to soil health and fertility.↵↵The optimal growth temperature of 29.0°C indicates that C. carbonis T26 thrives in moderate temperatures, which may reflect its adaptation to temperate climates or specific ecological niches where it can effectively participate in the degradation of organic matter. This trait emphasizes the importance of temperature in influencing microbial activity and interactions in various ecosystems. Overall, the physiological characteristics of Cellulomonas carbonis T26 highlight its ecological role in cellulose decomposition and nutrient recycling in aerobic environments." Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas carbonis Gram-positive rod aerobic 29 mesophilic 947969 AXCY00000000.1 Bac0010842 Cellulomonas bogoriensis 69B4 = DSM 16987 strain 69B4 "Cellulomonas bogoriensis strain 69B4 (DSM 16987) is a Gram-positive, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism, thriving optimally at a temperature of 32.0°C. This strain is part of the genus Cellulomonas, which is known for its ability to degrade cellulose, suggesting an enzymatic capability that may be significant for biotechnological applications, particularly in the context of biomass conversion and waste management.↵↵The facultative nature of its oxygen requirement indicates that C. bogoriensis 69B4 can adapt to varying environmental oxygen levels, providing it with a versatile ecological niche. This adaptability may also enhance its survival in diverse habitats, including those with fluctuating conditions, and may contribute to its potential role in the decomposition of organic matter.↵↵Given its optimal growth temperature, C. bogoriensis 69B4 may be particularly well-suited for environments that mimic moderate thermal conditions, such as those found in certain soil profiles or composting systems. The strain's cellulose-degrading abilities, coupled with its metabolic flexibility, position it as a candidate for further research into sustainable practices for bioconversion and nutrient cycling in various ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas bogoriensis Gram-positive rod facultative aerobe/anaerobe 32 mesophilic 301388 AXCZ00000000.1 Bac0010843 Corynebacterium sp. KPL1986 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. KPL1986 1203619 AXLS00000000.1 Bac0010844 Corynebacterium sp. KPL1855 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. KPL1855 1203562 AXLX00000000.1 Bac0010845 Propionibacterium sp. KPL2005 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL2005 1203633 AXMF00000000.1 Bac0010846 Propionibacterium sp. KPL1847 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL1847 1203574 AXML00000000.1 Bac0010847 Cellulomonas cellasea DSM 20118 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas cellasea 29 mesophilic 1408250 AXNT00000000.1 Bac0010848 Fusobacterium nucleatum CTI-6 "Fusobacterium nucleatum CTI-6 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0 °C. This microbe is primarily host-associated, indicating its existence within the microbiota of living organisms. ↵↵As a member of the Fusobacterium genus, F. nucleatum CTI-6 contributes to the complex microbial ecosystems found in a variety of host environments. Its anaerobic nature suggests that it occupies niches where oxygen is limited, such as the gastrointestinal tract or oral cavity, where it may play a role in the maintenance of microbial balance. The absence of sporulation in this strain implies a reliance on specific environmental conditions for survival and reproduction, potentially making it sensitive to changes in its habitat.↵↵The unique ecological insight into F. nucleatum CTI-6 is its adaptation to host-associated environments, where it may interact with other microbial species, possibly influencing microbial community dynamics and host health. Understanding the traits of this bacterium can provide valuable information for further research on its role within the microbiome and its interactions with host physiology." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1316587 AXNV00000000.1 Bac0010849 Fusobacterium nucleatum CTI-5 "Fusobacterium nucleatum CTI-5 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This microbe is primarily associated with host organisms, indicating its potential role in the microbiota of various hosts, including humans. ↵↵As a member of the Fusobacterium genus, F. nucleatum CTI-5 is adapted to survive in low-oxygen conditions, a characteristic that is essential for its ecological niche within host-associated environments. The anaerobic nature of this bacterium suggests that it may participate in various metabolic processes that occur in the absence of oxygen, potentially contributing to the complex interactions within the host microbiome.↵↵Understanding the specific ecological role of F. nucleatum CTI-5 could provide insights into its interactions with other microbial species and its influence on host health, particularly considering its habitat. Its nonsporulating trait indicates that it relies on stable environments to maintain its viability, which may play a role in its persistence and function within host-associated communities. This adaptability to a host-associated, anaerobic environment highlights the importance of Fusobacterium nucleatum CTI-5 in microbial ecology and its potential implications for host-microbe interactions." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1316586 AXNW00000000.1 Bac0010850 Fusobacterium nucleatum CTI-1 "Fusobacterium nucleatum CTI-1 is a nonsporulating, Gram-negative bacterium characterized by its rod-shaped morphology and strict anaerobic metabolism. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found within host environments. F. nucleatum CTI-1 is predominantly associated with host-associated habitats, suggesting a potential symbiotic relationship or involvement in the microbiota of various organisms.↵↵As an anaerobe, F. nucleatum CTI-1 relies on environments devoid of oxygen for growth and metabolic activity, which is a common trait among members of the Fusobacterium genus. The presence of this species in host-associated environments indicates its possible role in complex microbial communities, particularly within the human oral cavity and gastrointestinal tract, where it may contribute to the maintenance of homeostasis or interact with other microbial species.↵↵An intriguing aspect of F. nucleatum CTI-1 is its capacity to adapt to the anaerobic conditions of the host, which may influence the dynamics of microbial interactions and host health. This adaptability underscores the importance of understanding the ecological roles of anaerobic bacteria in both health and disease contexts, potentially illuminating their contributions to the overall microbial ecology within various host systems." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1204474 AXNZ00000000.1 Bac0010851 Enterobacter cloacae S611 EDP2.NODE_1926 "Enterobacter cloacae S611 EDP2.NODE_1926 is a Gram-negative, rod-shaped bacterium exhibiting facultative anaerobic respiration. This species is versatile in its habitat, being found in multiple environments, which may include soil, water, and human-associated niches. The facultative anaerobic nature of E. cloacae S611 EDP2.NODE_1926 suggests an adaptive metabolic flexibility that allows it to thrive in both oxygen-rich and oxygen-poor conditions, potentially contributing to its ecological success in diverse environments. ↵↵The ability of this microbe to switch between aerobic and anaerobic metabolism is particularly significant, as it may enable survival in fluctuating conditions and in various ecological niches. This adaptability may also facilitate interactions with other microorganisms in complex microbial communities, further highlighting its role in biogeochemical cycles and ecosystem dynamics. Understanding the traits of Enterobacter cloacae S611 EDP2.NODE_1926 can provide insights into its ecological functions and potential applications in biotechnology and environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 AXOM00000000.1 Bac0010852 Bordetella pertussis H921 "Bordetella pertussis H921 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 35.0°C and is classified as an aerobe, requiring oxygen for growth. This microbe is host-associated, indicating a close relationship with its host organisms, which is characteristic of many pathogenic bacteria. ↵↵Bordetella pertussis is primarily known as the causative agent of whooping cough, a highly contagious respiratory disease. The organism's adaptation to a host-associated habitat underscores its reliance on specific host environments for survival and proliferation. The aerobic nature of B. pertussis suggests that it may inhabit oxygen-rich niches within the respiratory tract, where it can effectively engage with host immune responses.↵↵The optimal growth temperature of 35.0°C aligns with the average temperature of the human respiratory tract, further illustrating its specialization for life within a host. While the precise ecological roles of B. pertussis outside of pathogenesis are not defined here, its adaptation to a host-associated, aerobic environment may provide insights into the evolutionary pressures that shape its virulence and survival strategies. Understanding these traits contributes to a broader knowledge of Bordetella species and their interactions with host organisms in the context of microbial ecology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella pertussis Negative Rod NA 1 2 Aerobe 35 Mesophilic HostAssociated 1331266 AXSM00000000.2 Bac0010853 Escherichia coli 907672 "Escherichia coli 907672 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli 907672 can survive in both aerobic and anaerobic environments, allowing it to exploit a variety of niches within the host’s microbiota. ↵↵The ability to grow in diverse oxygen conditions suggests a versatile metabolic capacity, which may facilitate its survival and proliferation in different parts of the host organism. This adaptability is a hallmark of many E. coli strains, highlighting the genus's ecological flexibility. While the specific ecological role of E. coli 907672 remains undefined, its presence in host-associated environments underscores the importance of studying the interactions between such microbes and their hosts, particularly in understanding the dynamics of microbial communities and their contributions to host health and disease. Furthermore, the ability of E. coli strains to inhabit various niches within a host may provide insights into their roles in nutrient cycling and metabolic processes, reflecting their significance in both ecological and biomedical contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268982 AXTE00000000.1 Bac0010854 Escherichia coli 908519 "Escherichia coli 908519 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the typical body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli 908519 is classified as a facultative anaerobe, allowing it to utilize both aerobic and anaerobic metabolic pathways depending on the oxygen availability in its environment.↵↵The ability to grow in both the presence and absence of oxygen suggests that E. coli 908519 could occupy diverse niches within the host, potentially contributing to various physiological processes. Its rod shape and arrangement may facilitate interactions with host cells and other microorganisms in the gut microbiota, where many E. coli strains are commonly found.↵↵Understanding the traits of E. coli 908519 can provide insights into its ecological role within the host-associated environments. For instance, its adaptability to varying oxygen levels may enhance its survival and proliferation in different sections of the gastrointestinal tract, where oxygen gradients can fluctuate. This versatility underscores the importance of E. coli strains in microbiome dynamics and their potential roles in maintaining gut health or influencing host metabolism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268991 AXTL00000000.1 Bac0010855 Escherichia coli 908525 "Escherichia coli 908525 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli 908525 can grow in both the presence and absence of oxygen, allowing it to colonize various niches within the host environment, where it can utilize diverse metabolic pathways depending on the availability of oxygen. ↵↵The ability to exist in pairs or singly may influence its interactions with host tissues and other microorganisms within the gut microbiome, potentially affecting its role in microbial community dynamics. This trait underscores the importance of understanding the ecological interactions that E. coli 908525 engages in, particularly its potential to adapt to varying environmental conditions within host-associated habitats. Such adaptability may enhance its survival and persistence in complex microbial ecosystems, contributing to the overall functionality and stability of the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268995 AXTP00000000.1 Bac0010856 Escherichia coli 908573 "Escherichia coli 908573 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe is classified as a facultative anaerobe, which enables it to thrive in both aerobic and anaerobic environments. E. coli 908573 exhibits optimal growth at a temperature of 37.0°C, aligning with the physiological temperature of its primary hosts, which may include warm-blooded animals.↵↵The habitat of E. coli 908573 is primarily host-associated, suggesting a close relationship with its host organisms. Such a lifestyle often indicates a role in various biological processes, including digestion and nutrient absorption, although the specific interactions of this strain with its host are not detailed here. The facultative anaerobic nature of E. coli 908573 may allow it to adapt to varying oxygen levels within the host's gastrointestinal tract, contributing to its survival and proliferation in diverse conditions.↵↵An intriguing aspect of E. coli 908573's biology is its potential versatility in metabolic pathways, which may allow it to exploit different substrates depending on the environmental oxygen levels. This adaptability not only supports its survival within the host but may also play a role in the microbial community dynamics of the gut microbiome, where competition and cooperation among different microbial species can significantly impact host health and metabolism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268998 AXTS00000000.1 Bac0010857 Eubacterium brachy ATCC 33089 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Eubacterium [Eubacterium] brachy anaerobic 1321814 AXUD00000000.1 Bac0010858 Escherichia coli 110957 "Escherichia coli 110957 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the intestines of warm-blooded hosts. E. coli 110957 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, a trait that enhances its adaptability in various host-associated habitats.↵↵The ability of E. coli 110957 to inhabit diverse ecological niches within a host organism suggests that it may play a role in the complex microbial communities of the gastrointestinal tract. Such communities are critical for nutrient absorption and digestion, as well as for maintaining overall gut health. The specific traits of this strain, particularly its temperature preference and metabolic flexibility, may enable it to interact with other microbes and host factors, potentially influencing host physiology and microbiome dynamics. This adaptability may also facilitate its survival in fluctuating environmental conditions within the host, reinforcing its importance in studies of microbial ecology and host interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268975 AXUE00000000.1 Bac0010859 Escherichia coli 113290 "Escherichia coli 113290 is a Gram-negative, rod-shaped bacterium commonly found in pairs or as single cells, demonstrating its characteristic morphology. This strain exhibits a facultative anaerobic lifestyle, indicating its ability to thrive in both aerobic and anaerobic environments, which is advantageous for survival within various host-associated habitats. The optimal growth temperature for E. coli 113290 is approximately 37.0°C, aligning with the body temperature of many warm-blooded hosts, further supporting its adaptation to a host-associated lifestyle.↵↵The facultative anaerobic nature of E. coli 113290 allows it to exploit diverse niches within the gastrointestinal tract of mammals, where it can compete effectively for nutrients while adjusting to fluctuating oxygen levels. This adaptability may contribute to its persistence in environments that experience variations in oxygen availability, such as the intestines of living hosts. ↵↵Overall, the traits of E. coli 113290 underscore its role as a versatile microbe, well-suited for life in complex biological systems where it may engage in symbiotic or commensal relationships, contributing to gut microbiome diversity and functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268976 AXUF00000000.1 Bac0010860 Escherichia coli 113303 "Escherichia coli 113303 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement primarily in pairs and singles. This strain thrives optimally at 37.0°C, reflecting its adaptation to a host-associated habitat, which is typical for many members of the Escherichia genus. As a facultative anaerobe, E. coli 113303 can grow in both aerobic and anaerobic environments, allowing it to exploit diverse ecological niches within the host. ↵↵The ability to switch between aerobic respiration and fermentation pathways is a significant metabolic advantage, facilitating survival in fluctuating oxygen conditions typically found in the intestinal tract of hosts. Furthermore, this adaptability may also play a role in the microbe's interactions with the host's immune system and other microbial inhabitants of the gut. Understanding such traits enables researchers to better appreciate the ecological roles of E. coli strains like 113303 in host-associated environments, as they may contribute to nutrient cycling and influence the overall microbiome composition." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268978 AXUG00000000.1 Bac0010861 Escherichia coli 907713 "Escherichia coli 907713 is a Gram-negative, rod-shaped bacterium typically found in host-associated environments, demonstrating a versatile adaptability to different oxygen levels as a facultative anaerobe. This strain predominantly exists in pairs or as single cells, which may influence its interactions within host systems. E. coli 907713 thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions of its host organisms.↵↵The ability of E. coli 907713 to grow in both aerobic and anaerobic conditions suggests a metabolic flexibility that may facilitate its survival in varied microenvironments within the host. This trait is particularly significant given the diverse ecological niches that E. coli can occupy, ranging from the intestinal tract to other host-associated sites. The bacterium’s rod shape and arrangement in pairs or singles could also impact its motility and colonization strategies, potentially influencing its competitive dynamics with other microbial species in the host.↵↵Understanding the specific attributes of E. coli 907713 contributes to the broader knowledge of its ecological roles and interactions within host-associated microbiomes. The unique combination of its Gram-negative structure, facultative anaerobic metabolism, and optimal growth temperature underscores its potential adaptability and resilience in host environments, which can be crucial for both its survival and the overall health of the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1268986 AXUI00000000.1 Bac0010862 Escherichia coli 909945-2 "Escherichia coli 909945-2 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cell arrangement characterized by pairs and singles, allowing for a diverse range of interactions within its habitat. E. coli 909945-2 thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts, suggesting its adaptation to a symbiotic or commensal lifestyle in this niche. ↵↵As a facultative anaerobe, E. coli 909945-2 possesses the ability to grow in both aerobic and anaerobic conditions, providing it with metabolic flexibility that may enhance its survival in various host-associated environments. This trait enables the bacterium to exploit a range of substrates for energy, likely contributing to its success in colonizing and persisting within the gastrointestinal tract of mammals. ↵↵The ecological role of E. coli 909945-2 may include contributions to nutrient cycling and the maintenance of gut microbiota balance, which are crucial for host health. Further investigation into the specific functions and interactions of this strain within its host environment could provide valuable insights into its contributions to microbial ecosystems and host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1269007 AXUK00000000.1 Bac0010863 Rothia aeria F0184 "Rothia aeria F0184 is a Gram-positive, cocci-shaped bacterium characterized by its aerobic nature and host-associated habitat. This microbe thrives in environments linked to its host, suggesting a potential role in the host's microbiome or biological processes. The coccal morphology of Rothia aeria F0184 may facilitate its interaction with host tissues or other microbial communities. ↵↵As an aerobe, this bacterium requires oxygen for growth, which positions it within environments where oxygen availability is sufficient, likely within the respiratory or oral cavities of its host. The association with host organisms highlights the potential for symbiotic relationships, where Rothia aeria F0184 might contribute to the overall health of the host or play a role in maintaining microbial balance.↵↵The known traits of Rothia aeria F0184 suggest that it may be adapted to specific niches within its host, possibly reflecting its evolutionary history of cohabitation. Further research could provide insights into its functional contributions within the host-associated microbiome, including its roles in metabolic processes or interactions with other microbial species. Understanding these dynamics may reveal the significance of Rothia aeria F0184 in broader ecological contexts, such as its potential influence on host health and disease." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia aeria Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living 888019 AXZG00000000.1 Bac0010864 Acinetobacter gyllenbergii NIPH 230 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter gyllenbergii 1217658 AYEQ00000000.1 Bac0010865 Acinetobacter indicus CIP 110367 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter indicus 1341679 AYET00000000.1 Bac0010866 Acinetobacter brisouii CIP 110357 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter brisouii aerobic 1341683 AYEU00000000.1 Bac0010867 Acinetobacter tjernbergiae DSM 14971 = CIP 107465 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter tjernbergiae aerobic 1120928 AYEV00000000.1 Bac0010868 Escherichia coli HVH 50 (4-2593475) "Escherichia coli HVH 50 (4-2593475) is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which is consistent with the temperature of the human body, suggesting a potential association with warm-blooded hosts. E. coli HVH 50 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, allowing it to adapt to varying environments within its host.↵↵The habitat of E. coli HVH 50 is primarily host-associated, which aligns with the behavior of many E. coli strains that inhabit the gastrointestinal tract of mammals. This association not only highlights the bacterium's ecological niche but also suggests its potential role in the complex microbial communities found within host organisms. Understanding the specific traits of E. coli HVH 50 can provide insights into its adaptive strategies and interactions within its habitat, particularly regarding nutrient acquisition and competition with other microbial species. Such knowledge may further elucidate the ecological dynamics of gut microbiomes, where E. coli often plays a significant role in maintaining the balance of microbial populations." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1280998 AYHF00000000.1 Bac0010869 Enterobacter sp. MGH 24 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. MGH 24 1329828 AYJG00000000.1 Bac0010870 Brevibacillus panacihumi W25 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus panacihumi 1408254 AYJU00000000.1 Bac0010871 Salinisphaera japonica YTM-1 "Salinisphaera japonica YTM-1 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolism. This organism is characterized by its unique morphological and physiological traits, which align it with a group of microorganisms adept at utilizing oxygen for growth and energy production. The Gram-negative nature of S. japonica YTM-1 suggests a complex cell wall structure, typically associated with an outer membrane containing lipopolysaccharides, which may influence its interactions with the environment and other microbial communities.↵↵The optimal growth temperature of 25.0°C indicates that S. japonica YTM-1 is well-suited to moderate thermophilic conditions, potentially reflecting its adaptation to specific ecological niches such as marine environments or other temperate habitats. Aerobic organisms like S. japonica play a crucial role in the biogeochemical cycles, particularly in the degradation of organic matter and the cycling of carbon and nitrogen. ↵↵Understanding the physiological characteristics of S. japonica YTM-1 not only contributes to the broader knowledge of microbial diversity but also offers insights into the ecological roles that such microorganisms may fulfill in their natural habitats. The ability of this bacterium to thrive under aerobic conditions could suggest its potential involvement in the maintenance of oxygen levels in specific ecosystems, highlighting the interconnectedness of microbial life and environmental health." Pseudomonadati Pseudomonadota Gammaproteobacteria Salinisphaerales Salinisphaeraceae Salinisphaera Salinisphaera japonica Gram-negative rod non-motile aerobic 25 mesophilic 1209778 AYKG00000000.1 Bac0010872 Lysinibacillus sphaericus CBAM5 "Lysinibacillus sphaericus CBAM5 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as an aerobic organism. This species is characterized by its ability to form spores, a trait that enables it to endure adverse environmental conditions, potentially enhancing its survival in specialized habitats. ↵↵As an aerobic microbe, Lysinibacillus sphaericus CBAM5 requires oxygen for growth, suggesting that it may thrive in environments rich in oxygen, such as soils or decaying organic matter where aerobic respiration can occur. The specialized habitat of this bacterium indicates potential adaptations that allow it to occupy niches where competition with other microorganisms may be limited.↵↵The ability to sporulate is particularly significant as it allows Lysinibacillus sphaericus CBAM5 to withstand desiccation and other stressors, thereby contributing to its persistence in its ecological niche. This trait may also play a role in its interactions with other microbial communities, either through competition or collaboration.↵↵In summary, Lysinibacillus sphaericus CBAM5 exemplifies a robust microorganism capable of surviving in specialized aerobic environments, and its sporulating nature could provide insights into strategies for biotechnological applications, such as biocontrol or biodegradation, where resilience is paramount." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sphaericus Positive Rod Yes 1 1 Aerobe Mesophilic Specialized Free living Sporulating 1400869 AYKQ00000000.1 Bac0010873 Methyloglobulus morosus KoM1 MGMO_435c Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methyloglobulus Methyloglobulus morosus 1410681 AYLO00000000.1 Bac0010874 Mycobacterium avium 05-4293 "Mycobacterium avium 05-4293 is a Gram-positive, rod-shaped bacterium that typically occurs as single cells. This microbe is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. Optimal growth occurs at a temperature of 37.0°C, suggesting a preference for conditions that are typically found within host organisms. M. avium 05-4293 is a microaerophile, which means it requires a reduced level of oxygen for growth compared to atmospheric concentrations.↵↵The habitat of M. avium 05-4293 is primarily host-associated, indicating that it is likely adapted to living within specific biological environments, such as the tissues or fluids of a host organism. This association may suggest a specialized role in the microbial community of the host, potentially influencing the host's microbiome dynamics or immune responses. ↵↵The traits of M. avium 05-4293 highlight its adaptation to specific ecological niches, particularly those that provide the necessary organic substrates and microaerophilic conditions for its survival and proliferation. Understanding these characteristics is crucial for further investigations into its biological roles and interactions within host-associated environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1392002 AYLW00000000.1 Bac0010875 uncultured Acidilobus sp. CIS Thermoproteati Thermoproteota Thermoprotei Acidilobales Acidilobaceae Acidilobus uncultured Acidilobus sp. CIS 1410574 AYMB00000000.1 Bac0010876 Betaproteobacteria bacterium MOLA814 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium MOLA814 1408164 AYMW00000000.1 Bac0010877 Pseudomonas moraviensis R28-S Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas moraviensis 1395516 AYMZ00000000.1 Bac0010878 Mycobacterium avium 10-5581 "Mycobacterium avium strain 10-5581 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. M. avium 10-5581 thrives optimally at a temperature of 37.0°C, which suggests a potential adaptation to a host-associated environment, likely within warm-blooded animals. Furthermore, it is a microaerophile, requiring reduced levels of oxygen for growth, which may influence its habitat preferences within host tissues.↵↵The host-associated nature of M. avium 10-5581 implies an ecological role that could be significant in understanding microbial dynamics within animal hosts. The combination of its optimum growth temperature and oxygen requirements suggests a niche that may involve interactions with host immune responses or other microbial communities present in similar environments. Such traits point to the potential complexity of its biological interactions, which may have implications for studying its ecological role in host-associated microbiomes." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1392000 AYNT00000000.1 Bac0010879 Mycobacterium avium subsp. hominissuis 10-5606 "Mycobacterium avium subsp. hominissuis 10-5606 is a Gram-positive, rod-shaped bacterium that typically exists as single cells, reflecting its unique cellular arrangement. This strain is a chemoorganotroph, indicating that it derives its energy from organic compounds, and it thrives optimally at a temperature of 37.0°C, which suggests a potential adaptation to host-associated environments. As a microaerophile, M. avium subsp. hominissuis 10-5606 requires reduced levels of oxygen for growth, further emphasizing its association with specific ecological niches, likely within host organisms where oxygen concentrations may vary.↵↵The ability of this bacterium to adapt to microaerophilic conditions while being associated with a host highlights its potential role in the complex interactions within microbial communities found in mammalian hosts. This ecological insight suggests that M. avium subsp. hominissuis 10-5606 may participate in symbiotic or opportunistic interactions, influencing the microbial dynamics within its habitat." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1381559 AYNU00000000.1 Bac0010880 Mycobacterium avium subsp. silvaticum ATCC 49884 "Mycobacterium avium subsp. silvaticum ATCC 49884 is a Gram-positive, rod-shaped bacterium that typically exists as single cells and is characterized as a microaerophile, indicating a preference for environments with reduced oxygen levels. This subspecies demonstrates an optimal growth temperature of 37.0°C, which aligns with the physiological conditions found within host organisms. As a chemoorganotroph, M. avium subsp. silvaticum ATCC 49884 relies on organic compounds for energy, suggesting its adaptation to nutrient-rich environments typically associated with host organisms.↵↵The habitat of this bacterium is notably host-associated, indicating a close relationship with its biological hosts. This trait may reflect its evolutionary adaptations to exploit the resources available within host tissues while potentially engaging in complex interactions with the host's immune system. The microaerophilic nature of M. avium subsp. silvaticum ATCC 49884 implies that it may thrive in niches where oxygen levels are lower than atmospheric concentrations, which could influence its ecological roles and interactions within host-associated microbiomes.↵↵Understanding the specific ecological niches occupied by this subspecies can provide insights into its potential roles in microbial communities and its interactions with other microorganisms and host defenses. Further research may elucidate the implications of these traits in broader ecological contexts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1401690 AYOC00000000.1 Bac0010881 Streptococcus mitis 21/39 "Streptococcus mitis 21/39 is a Gram-positive coccus that typically exhibits a characteristic arrangement of chains and pairs. This strain is classified as a nonsporulating bacterium, indicating its inability to form spores. As a facultative anaerobe, S. mitis 21/39 can thrive in both aerobic and anaerobic environments, adapting its metabolism based on the availability of oxygen. ↵↵Primarily associated with host environments, S. mitis 21/39 is a member of the oral and respiratory microbiota, contributing to the complex microbial communities found in these habitats. Its presence in host-associated niches underscores its potential role in maintaining microbial homeostasis and influencing host health. The ability to survive under varying oxygen conditions may provide a competitive advantage in the dynamic environments of the human oral cavity, where fluctuations in oxygen levels can occur due to various physiological processes.↵↵This strain's ecological adaptability highlights the intricate interplay between host-associated bacteria and their environments, suggesting that S. mitis 21/39 may play a significant role in the modulation of host responses or in the prevention of colonization by more pathogenic organisms. Further studies could elucidate the specific ecological functions of this strain within its native habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1415765 AYRR00000000.1 Bac0010882 Streptococcus mitis 27/7 "Streptococcus mitis 27/7 is a Gram-positive cocci bacterium that typically arranges itself in chains and pairs. This strain is nonsporulating and thrives in host-associated environments, indicating its adaptation to living within or on host organisms. As a facultative anaerobe, S. mitis 27/7 can grow in both the presence and absence of oxygen, which enhances its survival capabilities in diverse physiological conditions found within host environments.↵↵The presence of S. mitis in the oral cavity and other mucosal surfaces suggests its role in the complex microbiota of these regions, where it may contribute to the maintenance of microbial balance. This strain's ability to exist in various oxygen conditions may also facilitate its interaction with other microbial species, potentially influencing community dynamics and metabolic processes within the host. Understanding the characteristics of Streptococcus mitis 27/7 can provide insights into its biological interactions and functional roles in host-associated microbiomes, which are crucial for maintaining health and preventing dysbiosis." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1415766 AYRS00000000.1 Bac0010883 Blastomonas sp. CACIA14H2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Blastomonadaceae Blastomonas Blastomonas sp. CACIA14H2 1419876 AYSC00000000.1 Bac0010884 Streptococcus thermophilus TH1435 "Streptococcus thermophilus TH1435 is a Gram-positive cocci bacterium that typically occurs in chains or pairs and exhibits an optimal growth temperature of 45.0°C. This organism is classified as an anaerobe, thriving in environments devoid of oxygen, which suggests its adaptation to specific niches where oxygen availability is limited or absent.↵↵S. thermophilus TH1435 is commonly found in multiple habitats, reflecting its versatility and potential roles in various ecological contexts, particularly those involving fermentation processes. This species is often utilized in the dairy industry for its ability to ferment lactose, contributing to the production of yogurt and other fermented milk products. The optimal growth temperature of 45.0°C indicates its thermophilic nature, which allows it to flourish in warm environments, a trait that is advantageous in industrial fermentation settings where temperature control is critical.↵↵Additionally, the presence of this strain in diverse habitats may suggest its potential role in microbial communities, where it could participate in nutrient cycling or interact with other microorganisms. The ability to form chains and pairs may enhance its survival and colonization capacities in competitive environments. Overall, S. thermophilus TH1435 exemplifies the adaptability of certain microorganisms to thrive in specialized niches, reflecting an evolutionary strategy that enables them to exploit specific thermal and anaerobic conditions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1415776 AYSG00000000.1 Bac0010885 Mesotoga sp. Brook.08.105.5.1 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp. Brook.08.105.5.1 1421002 AYTW00000000.1 Bac0010886 Frankia sp. CcI6 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. CcI6 1352929 AYTZ00000000.1 Bac0010887 Tannerella sp. oral taxon BU063 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella serpentiformis 712710 AYUF00000000.1 Bac0010888 Mesorhizobium sp. LSJC285A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSJC285A00 1287338 AYVK00000000.1 Bac0010889 Mesorhizobium sp. LSJC277A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSJC277A00 1287334 AYVM00000000.1 Bac0010890 Mesorhizobium sp. LSJC269B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSJC269B00 1287326 AYVN00000000.1 Bac0010891 Mesorhizobium sp. LSJC265A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSJC265A00 1287322 AYVP00000000.1 Bac0010892 Mesorhizobium sp. LSHC420B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LSHC420B00 1287292 AYVY00000000.1 Bac0010893 Mesorhizobium sp. LNJC399B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNJC399B00 1287277 AYWE00000000.1 Bac0010894 Mesorhizobium sp. LNJC395A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNJC395A00 1287275 AYWG00000000.1 Bac0010895 Mesorhizobium sp. LNJC386A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNJC386A00 1287270 AYWJ00000000.1 Bac0010896 Mesorhizobium sp. LNHC252B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNHC252B00 1287252 AYWO00000000.1 Bac0010897 Mesorhizobium sp. LNHC229A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNHC229A00 1287240 AYWQ00000000.1 Bac0010898 Mesorhizobium sp. LNHC221B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNHC221B00 1287233 AYWR00000000.1 Bac0010899 Mesorhizobium sp. LNHC220B00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LNHC220B00 1287232 AYWS00000000.1 Bac0010900 Mesorhizobium sp. L48C026A00 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L48C026A00 1287182 AYWU00000000.1 Bac0010901 Mesorhizobium sp. L2C089B000 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L2C089B000 1287120 AYWV00000000.1 Bac0010902 Mesorhizobium sp. L2C067A000 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L2C067A000 1287106 AYWY00000000.1 Bac0010903 Mesorhizobium sp. L103C565B0 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L103C565B0 1287094 AYXB00000000.1 Bac0010904 Mesorhizobium sp. L103C131B0 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L103C131B0 1287089 AYXC00000000.1 Bac0010905 Mesorhizobium sp. L103C120A0 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. L103C120A0 1287086 AYXD00000000.1 Bac0010906 Advenella kashmirensis W13003 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Advenella Advenella kashmirensis 1424334 AYXT00000000.1 Bac0010907 Lacticaseibacillus paracasei subsp. tolerans DSM 20258 "Lacticaseibacillus paracasei subsp. tolerans DSM 20258 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism. This subspecies thrives optimally at a temperature of 30.0°C, indicating a preference for moderate thermal conditions. It is noted for its ability to inhabit a variety of environments, which may include fermented foods, the gastrointestinal tract of mammals, or other ecological niches supportive of lactic acid bacteria.↵↵The facultative anaerobic nature of Lacticaseibacillus paracasei subsp. tolerans suggests that it can adapt to both aerobic and anaerobic conditions, allowing it to survive in fluctuating oxygen levels present in its diverse habitats. This adaptability may play a significant role in its ecological success and functionality, particularly in fermentation processes where oxygen availability can vary.↵↵The ability of this subspecies to form chains may also contribute to its stability and resilience in various environments, potentially enhancing its interactions with other microorganisms and its role in complex microbial communities. Understanding the traits of Lacticaseibacillus paracasei subsp. tolerans can provide insights into its potential applications in food technology and probiotics, where its survival and metabolic capabilities can influence product quality and health benefits." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1423830 AYYJ00000000.1 Bac0010908 Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus sharpeae 1291052 AYYO00000000.1 Bac0010909 Ligilactobacillus agilis DSM 20509 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus agilis 1423718 AYYP00000000.1 Bac0010910 Paucilactobacillus vaccinostercus DSM 20634 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus vaccinostercus 1423813 AYYY00000000.1 Bac0010911 Latilactobacillus graminis DSM 20719 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus graminis 1423752 AYZB00000000.1 Bac0010912 Liquorilactobacillus cacaonum DSM 21116 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus cacaonum 1423729 AYZE00000000.1 Bac0010913 Fructilactobacillus florum DSM 22689 = JCM 16035 strain DSM 22689 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus florum 640331 AYZI00000000.1 Bac0010914 Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 strain DSM Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus thailandensis 381741 AYZK00000000.1 Bac0010915 Dethiosulfatarculus sandiegensis strain SPR "Dethiosulfatarculus sandiegensis strain SPR is a curved or spiral-shaped, anaerobic microbe that thrives optimally at a temperature of 32.0°C. As an organotrophic chemotroph, this strain utilizes organic compounds as its primary energy source, positioning it within a niche of microorganisms that play significant roles in the biodegradation of organic matter under anoxic conditions. ↵↵The unique morphological characteristics of D. sandiegensis strain SPR suggest adaptations that may facilitate its survival and metabolic processes in environments where oxygen is limited. The specific temperature preference indicates that this strain is likely adapted to moderately warm habitats, potentially including marine or sedimentary ecosystems. ↵↵In terms of ecological function, Dethiosulfatarculus sandiegensis strain SPR may contribute to biogeochemical cycles by participating in the breakdown of organic materials, particularly in anaerobic zones where traditional aerobic degradation is not feasible. This capability underscores the importance of such microbes in maintaining ecosystem health and nutrient recycling, particularly in environments with fluctuating oxygen levels. Understanding the metabolic pathways and ecological roles of D. sandiegensis strain SPR can provide insights into its potential applications in bioremediation and sustainability efforts." Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Dethiosulfatarculus Dethiosulfatarculus sandiegensis curved/spiral anaerobic 32 organotroph; chemotroph mesophilic 1429043 AZAC00000000.1 Bac0010916 Marinitoga sp. 1155 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga sp. 1155 1428448 AZAX00000000.1 Bac0010917 Apilactobacillus kunkeei DSM 12361 = ATCC 700308 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei 1423768 AZCK00000000.1 Bac0010918 Amylolactobacillus amylotrophicus DSM 20534 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Amylolactobacillus Amylolactobacillus amylotrophicus 1423722 AZCV00000000.1 Bac0010919 Lactobacillus crispatus DSM 20584 = JCM 1185 = ATCC 33820 strain "Lactobacillus crispatus DSM 20584 (also known as JCM 1185 and ATCC 33820) is a Gram-positive, rod-shaped bacterium that typically forms chains and is nonsporulating. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The optimal growth temperature for L. crispatus DSM 20584 is approximately 37.0°C, which aligns with the physiological temperature of many mammalian hosts.↵↵Lactobacillus crispatus is commonly found in host-associated habitats, notably within the human microbiome, particularly in the gastrointestinal tract and the female urogenital tract. Its presence in these niches is often associated with beneficial roles, such as the maintenance of microbial balance and the prevention of pathogenic infections. The strain's ability to grow in varying oxygen conditions may contribute to its adaptability within the host environment, allowing it to compete effectively with other microbial species.↵↵Recent studies suggest that specific strains of Lactobacillus, including L. crispatus, may play a crucial role in the modulation of local immune responses and the production of antimicrobial substances. These activities could enhance host health by promoting a balanced microflora and protecting against dysbiosis. Thus, L. crispatus DSM 20584 exemplifies the intricate relationships that beneficial microbes maintain with their hosts, highlighting the potential for Lactobacillus species in probiotic applications and health promotion." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 AZCW00000000.1 Bac0010920 Secundilactobacillus kimchicus JCM 15530 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus kimchicus 1302272 AZCX00000000.1 Bac0010921 Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 "Lactobacillus equicursoris DSM 19284 (also known as JCM 14600 and CIP 110162) is a Gram-positive, rod-shaped bacterium that exhibits optimal growth at 37.0°C. This species belongs to the genus Lactobacillus, which is renowned for its role in various fermentation processes and its presence in the gastrointestinal tracts of many animals, including humans. ↵↵As a member of the lactic acid bacteria, L. equicursoris likely contributes to the production of lactic acid, which can play a vital role in maintaining a balanced microbial ecosystem. The optimal growth temperature suggests that this microbe is well-adapted to warm-blooded hosts, where it may participate in microbial interactions that enhance gut health or food preservation. ↵↵The specific habitat of L. equicursoris has not been thoroughly documented; however, its affinity for warm temperatures and its classification within the Lactobacillus genus suggest potential associations with the guts of mammals, particularly equines, given its name. This connection might indicate a specialized role in the digestion or fermentation of plant materials in herbivorous hosts, thereby contributing to nutrient availability and digestive efficiency. Overall, L. equicursoris exemplifies the diverse adaptations of Lactobacillus species to their environments, highlighting their importance in both ecological and biotechnological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus equicursoris Gram-positive rod non-motile 37 mesophilic 1293597 AZDU00000000.1 Bac0010922 Levilactobacillus acidifarinae DSM 19394 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus acidifarinae 267364 AZDV00000000.1 Bac0010923 Liquorilactobacillus hordei DSM 19519 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus hordei 1423759 AZDX00000000.1 Bac0010924 Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus nodensis 1423775 AZDZ00000000.1 Bac0010925 Lentilactobacillus sunkii DSM 19904 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus sunkii 1423808 AZEA00000000.1 Bac0010926 Lentilactobacillus kisonensis DSM 19906 = JCM 15041 strain DSM Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus kisonensis 481722 AZEB00000000.1 Bac0010927 Liquorilactobacillus capillatus DSM 19910 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus capillatus 1423731 AZEF00000000.1 Bac0010928 Lentilactobacillus rapi DSM 19907 = JCM 15042 strain DSM 19907 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus rapi 481723 AZEI00000000.1 Bac0010929 Lentilactobacillus parakefiri DSM 10551 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus parakefiri 1423787 AZEN00000000.1 Bac0010930 Companilactobacillus versmoldensis DSM 14857 = KCTC 3814 strain Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus versmoldensis 194326 AZFA00000000.1 Bac0010931 Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus pantheris 1423783 AZFJ00000000.1 Bac0010932 Limosilactobacillus ingluviei DSM 15946 "Limosilactobacillus ingluviei DSM 15946 is a rod-shaped, nonsporulating bacterium classified within the intestinal microflora of animals. This microbe is a chemoheterotroph, meaning it derives its energy from the organic compounds present in its habitat. As part of the gastrointestinal microbiota, L. ingluviei plays a crucial role in maintaining the balance of microbial communities within the intestinal tract, contributing to the overall health of its host.↵↵The nonsporulating nature of L. ingluviei suggests that it relies on a stable environment for survival and proliferation, which is characteristic of many members of the lactic acid bacteria group. This trait may enhance its ability to thrive in the relatively constant conditions of the animal gut, where it can engage in metabolic activities that facilitate nutrient absorption and fermentation processes.↵↵Additionally, the presence of Limosilactobacillus ingluviei in the intestinal microflora highlights the importance of such microbes in the digestive processes of their hosts. They may assist in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for gut health. The interactions between L. ingluviei and other microbial species in the gut also underscore the complex dynamics of microbial ecosystems, suggesting potential roles in competitive exclusion of pathogens and modulation of host immune responses. Understanding these interactions could provide insights into the functional significance of Limosilactobacillus ingluviei in animal health and nutrition." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus ingluviei Rod No 1 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1423760 AZFK00000000.1 Bac0010933 Lactobacillus kalixensis DSM 16043 "Lactobacillus kalixensis DSM 16043 is a Gram-positive, rod-shaped bacterium characterized by its non-spore-forming nature and anaerobic growth requirements, thriving optimally at a temperature of 37.0°C. This species is part of the Lactobacillus genus, which is well-known for its role in various fermentation processes and its presence in diverse microbiomes.↵↵As a non-spore-forming organism, L. kalixensis relies on stable environments for survival and growth, suggesting a potential sensitivity to environmental fluctuations. The optimal growth temperature of 37.0°C aligns with the physiological conditions found in the human body and various warm-blooded animals, indicating a possible niche for this microbe in host-associated environments. ↵↵The anaerobic nature of L. kalixensis indicates its adaptation to low-oxygen conditions, which is typical for many members of the Lactobacillus genus that are often found in fermented foods and the gastrointestinal tracts of mammals. This trait may confer advantages in competing with other microorganisms in such environments, as it can effectively metabolize substrates in the absence of oxygen.↵↵In summary, Lactobacillus kalixensis DSM 16043 exemplifies the specialized adaptations of anaerobic, Gram-positive bacteria that thrive in stable, warm environments, contributing to the complex interactions within microbial communities and possibly influencing fermentation processes in food production. Further studies could illuminate its specific ecological roles and applications in fermentation technology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus kalixensis Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 1423763 AZFM00000000.1 Bac0010934 Limosilactobacillus gastricus DSM 16045 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus gastricus 1423749 AZFN00000000.1 Bac0010935 Ligilactobacillus apodemi DSM 16634 = JCM 16172 strain DSM 16634 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus apodemi 307126 AZFT00000000.1 Bac0010936 Companilactobacillus nantensis DSM 16982 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus nantensis 1423774 AZFV00000000.1 Bac0010937 Liquorilactobacillus ghanensis DSM 18630 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus ghanensis 1423750 AZGB00000000.1 Bac0010938 Limosilactobacillus oris DSM 4864 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus oris 1423779 AZGE00000000.1 Bac0010939 Lactobacillus hamsteri DSM 5661 = JCM 6256 strain DSM 5661 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus hamsteri anaerobic intestine 96565 AZGI00000000.1 Bac0010940 Lactobacillus intestinalis DSM 6629 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus intestinalis 1423761 AZGN00000000.1 Bac0010941 Eikenella corrodens CC92I "Eikenella corrodens CC92I is a Gram-negative, facultative anaerobic bacterium that is part of the normal flora of the human mouth and gastrointestinal tract. This microbe is known for its ability to thrive in both aerobic and anaerobic environments, allowing it to adapt to various conditions encountered within the human body. Eikenella corrodens is characterized by its slow growth rate and the production of a distinctive brown pigment when cultured under specific conditions.↵↵As a member of the HACEK group, which includes other fastidious organisms, E. corrodens requires specific nutrients for optimal growth, highlighting its specialized metabolic capabilities. Its Gram-negative cell wall structure contributes to its resilience against certain antibiotics, a trait that is relevant for clinical considerations when treating infections associated with this organism. ↵↵Eikenella corrodens is often involved in polymicrobial infections, particularly in contexts where tissue damage allows for its entry into sterile sites of the body. Its presence in the oral cavity suggests a potential role in oral and systemic health, implicating it in both commensal relationships and disease processes. ↵↵An intriguing aspect of Eikenella corrodens CC92I is its metabolic versatility, which may enable it to play a role in biogeochemical cycles within the human microbiome. This adaptability underscores the importance of understanding microbial interactions and functions within complex ecosystems, particularly in relation to human health and disease." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella corrodens Negative Facultative anaerobe 1073362 AZGQ00000000.1 Bac0010942 Rhodococcus rhodochrous ATCC 21198 "Rhodococcus rhodochrous ATCC 21198 is a Gram-positive, cocci-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This nonsporulating microbe is primarily found in soil environments, where it plays a significant role in the degradation of various organic pollutants. As an aerobic organism, R. rhodochrous requires oxygen for its metabolic processes, which further underscores its adaptation to terrestrial habitats.↵↵The capability of R. rhodochrous ATCC 21198 to metabolize a diverse array of organic substrates suggests its potential utility in bioremediation applications, particularly in the breakdown of hydrocarbons and other environmental contaminants. Its presence in soil ecosystems highlights its ecological importance, as it may contribute to nutrient cycling and the maintenance of soil health. Understanding the metabolic pathways and interactions of R. rhodochrous ATCC 21198 can provide insights into its ecological functions and potential applications in environmental microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus rhodochrous Positive Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 1429046 AZHI00000000.1 Bac0010943 Candidatus Entotheonella factor Pseudomonadati Candidatus Tectimicrobiota Candidatus Entotheonellia Candidatus Entotheonellales Candidatus Entotheonellaceae Candidatus Entotheonella Candidatus Entotheonella factor 1429438 AZHW00000000.1 Bac0010944 Gammaproteobacteria bacterium MOLA455 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae Gammaproteobacteria bacterium MOLA455 1411685 AZIN00000000.1 Bac0010945 Borrelia duttonii CR2A "Borrelia duttonii CR2A is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This organism is classified as an aerobe, indicating its requirement for oxygen to sustain metabolic processes. B. duttonii CR2A is host-associated, suggesting a close relationship with its host organisms, which may play a crucial role in its life cycle and ecological interactions. ↵↵The spiral morphology of B. duttonii CR2A is typical of the genus Borrelia, which is known for its distinctive helical structure that may contribute to its motility and ability to navigate through viscous environments such as host tissues. The aerobiotic nature of this bacterium points to its potential metabolic pathways that utilize oxygen, which may influence its survival strategies within host-associated niches.↵↵Understanding the ecological role of B. duttonii CR2A may provide insights into the dynamics of host-microbe interactions, particularly in environments where oxygen levels fluctuate, such as within the tissues of infected hosts. This relationship underscores the importance of studying host-associated microbes to unravel the complexities of microbial life and their adaptations in various ecological contexts." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia duttonii Negative Spirilla No 1 2 Aerobe Psychrophilic HostAssociated Free living Singles 1432657 AZIT00000000.1 Bac0010946 Streptococcus parasanguinis CC87K "Streptococcus parasanguinis CC87K is a Gram-positive coccal bacterium that typically forms chains or pairs and is classified as a facultative anaerobe. This strain does not undergo sporulation, indicating that it relies on alternative survival mechanisms in its host-associated habitat. ↵↵As a member of the Streptococcus genus, S. parasanguinis CC87K likely plays a role in the oral microbiome, where it may contribute to normal microbial balance and potentially affect host health. Its facultative anaerobic nature suggests that this microbe can adapt to varying oxygen levels, which is particularly advantageous in the dynamic environment of the oral cavity where oxygen concentrations can fluctuate due to various physiological conditions.↵↵The nonsporulating characteristic of S. parasanguinis CC87K implies a reliance on nutrient availability and environmental conditions for survival rather than the resilience offered by spores. This trait may also influence its interactions with other microorganisms within its habitat, as well as its responses to antimicrobial treatments. Understanding the ecological role of S. parasanguinis CC87K could provide insights into its contributions to oral health and disease, as well as its potential interactions with other members of the oral microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1073372 AZJD00000000.1 Bac0010947 Hoylesella oralis CC98A Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella oralis 1073367 AZJG00000000.1 Bac0010948 Eubacterium nodatum ATCC 33099 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Eubacterium [Eubacterium] nodatum anaerobic 1161902 AZKM00000000.1 Bac0010949 Actinomyces urogenitalis DORA_12 "Actinomyces urogenitalis DORA_12 is a Gram-positive bacterium characterized by its facultative anaerobic metabolism. This microbe exhibits the ability to thrive in both aerobic and anaerobic environments, suggesting a versatile ecological adaptability. The Gram-positive nature of A. urogenitalis DORA_12 indicates a thick peptidoglycan layer in its cell wall, which plays a crucial role in its structural integrity and potential resistance to certain environmental stresses.↵↵The facultative anaerobic trait of this organism allows it to utilize oxygen when available, while also being capable of fermentation or anaerobic respiration in the absence of oxygen. This flexibility can enhance its survival in diverse habitats, particularly in nutrient-rich environments where oxygen levels may fluctuate.↵↵While the specific ecological roles and interactions of A. urogenitalis DORA_12 remain to be fully elucidated, its Gram-positive classification and metabolic adaptability suggest that it could be involved in complex microbial communities, particularly in urogenital environments. These traits may also provide insights into its potential contributions to the microbiome, such as nutrient cycling or modulation of local microbial dynamics. Further investigation is warranted to understand the ecological significance and functional roles of this organism within its habitat." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces urogenitalis Positive Facultative anaerobe 1403939 AZLV00000000.1 Bac0010950 Escherichia coli DORA_A_5_14_21 "Escherichia coli DORA_A_5_14_21 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement primarily in pairs and singles. This strain thrives at an optimal temperature of 37.0°C, indicative of its adaptation to host-associated environments, such as the intestines of warm-blooded animals. As a facultative anaerobe, E. coli DORA_A_5_14_21 can metabolize energy both in the presence and absence of oxygen, which allows it to survive and proliferate in varying oxygen conditions within its host.↵↵The rod shape and negative Gram stain of this strain suggest a complex cell wall structure, characteristic of many members of the Enterobacteriaceae family. This structural feature is integral to its resilience and interaction with the host's immune response. The habitat of E. coli DORA_A_5_14_21, being host-associated, positions it within a significant ecological niche, where it may play roles in nutrient cycling and gut microbiota dynamics.↵↵Understanding the physiological traits of E. coli DORA_A_5_14_21 enhances our comprehension of its functional capabilities in the microbiome. This strain’s ability to thrive in diverse oxygen conditions and its optimal growth temperature align with the conditions found in the intestinal tract, suggesting its potential involvement in maintaining intestinal homeostasis and influencing host health. Further studies on this strain may reveal insights into its specific interactions within the gastrointestinal microbiota and its contributions to host metabolism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1403943 AZLZ00000000.1 Bac0010951 Halomonas sp. BC04 BC04_rep_c5869 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. BC04 1403540 AZQX00000000.1 Bac0010952 Petrotoga sp. 9T1HF07.CasAA.8.2 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sp. 9T1HF07.CasAA.8.2 1434329 AZRI00000000.1 Bac0010953 Petrotoga olearia DSM 13574 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga olearia anaerobic 1122955 AZRL00000000.1 Bac0010954 Petrotoga miotherma DSM 10691 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga miotherma anaerobic 1434326 AZRM00000000.1 Bac0010955 Petrotoga mexicana DSM 14811 "Petrotoga mexicana DSM 14811 is a Gram-negative, rod-shaped bacterium that exhibits non-spore-forming characteristics and thrives optimally at a temperature of 45.0°C. This thermophilic microorganism has been studied for its potential applications in biotechnology due to its ability to metabolize various substrates in high-temperature environments. ↵↵As a member of the family Thermotogaceae, P. mexicana is typically found in geothermal environments, where its growth is facilitated by elevated temperatures. The bacterium's rod shape contributes to its adaptability in such extreme conditions, allowing it to maintain structural integrity and metabolic activity in hot environments. ↵↵Although specific metabolic pathways have not been detailed in the available traits, the thermophilic nature of P. mexicana suggests that it may play a role in biogeochemical cycles in geothermal ecosystems. Its capacity to thrive at elevated temperatures positions it as a candidate for biotechnological applications, particularly in processes that require high thermal stability. ↵↵In summary, Petrotoga mexicana DSM 14811 exemplifies the adaptations of thermophilic bacteria to extreme environments, and its characteristics may contribute to our understanding of microbial diversity and function in geothermal habitats. Further research into its metabolic capabilities could reveal insights into the ecological roles these microorganisms play in nutrient cycling and energy flow within their native ecosystems." Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga mexicana Gram-negative rod 45 thermophilic non-spore-forming 1122954 AZRN00000000.1 Bac0010956 Afipia sp. P52-10 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia sp. P52-10 1429916 AZSJ00000000.1 Bac0010957 Methylibium sp. T29-B Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Methylibium Methylibium sp. T29-B 1437443 AZSN00000000.1 Bac0010958 Streptomyces scopuliridis RB72 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces scopuliridis 1440053 AZSP00000000.1 Bac0010959 Pseudomonas sp. BAY1663 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. BAY1663 1439940 AZSV00000000.1 Bac0010960 Caloranaerobacter azorensis H53214 Bacillati Bacillota Tissierellia Tissierellales Thermohalobacteraceae Caloranaerobacter Caloranaerobacter azorensis 1156417 AZTB00000000.1 Bac0010961 Streptococcus thermophilus TH1477 "Streptococcus thermophilus TH1477 is a Gram-positive, coccoid bacterium that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 45.0°C, indicating its adaptation to thermophilic environments. As an anaerobe, S. thermophilus TH1477 does not require oxygen for growth, which aligns with its habitat preferences that are likely to include various anaerobic niches.↵↵This microbe is known for its role in the fermentation of dairy products, particularly yogurt, where it contributes to the characteristic flavor and texture through the production of lactic acid. Its ability to ferment lactose efficiently at elevated temperatures makes it a valuable organism in industrial microbiology, particularly in the dairy industry.↵↵The adaptability of S. thermophilus TH1477 to thrive in multiple habitats, combined with its optimal growth at high temperatures, suggests a significant ecological role in natural and industrial fermentation processes. This thermophilic nature may also provide insights into the evolution of microbial communities in hot environments, where such organisms can compete effectively for resources, contributing to the overall biodiversity and functionality of microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1436725 AZTJ00000000.1 Bac0010962 Mycobacterium gastri 'Wayne' Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium gastri 1436723 AZYN00000000.1 Bac0010963 Bacillus haynesii strain S 16 Bacillus_licheniformis_S16_c196 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus haynesii 1925021 AZYP00000000.1 Bac0010964 Streptococcus sp. SR4 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. SR4 1161417 AZYW00000000.1 Bac0010965 Veillonella sp. AS16 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. AS16 936589 AZYX00000000.1 Bac0010966 Pseudoalteromonas sp. BSi20495 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. BSi20495 386429 BADY00000000.1 Bac0010967 Gordonia amarae NBRC 15530 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia amarae 1075090 BAED00000000.1 Bac0010968 Arthrobacter globiformis NBRC 12137 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter globiformis 1077972 BAEG00000000.1 Bac0010969 Gordonia effusa NBRC 100432 "Gordonia effusa NBRC 100432 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This organism thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. The spore-forming capability of G. effusa is indicative of its adaptation to survive in fluctuating environments, allowing it to endure adverse conditions that may not be conducive to active growth.↵↵The Gram-positive nature of G. effusa is significant as it indicates a thicker peptidoglycan layer in its cell wall structure, which can be associated with certain biochemical properties and resistance mechanisms. While the specific ecological roles and habitats of G. effusa remain to be fully elucidated, its physiological traits suggest potential involvement in biogeochemical cycles, particularly in environments where organic matter decomposition occurs, given the general ecological roles played by Gordonia species. ↵↵In summary, the combination of its Gram-positive status, rod shape, and sporulation ability positions Gordonia effusa NBRC 100432 as a resilient organism likely adapted to moderate-temperature environments, potentially contributing to microbial communities involved in the breakdown of complex organic materials." Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia effusa Gram-positive rod non-motile 29 mesophilic spore-forming 1077974 BAEH00000000.1 Bac0010970 Paraglaciecola agarilytica NO2 "Paraglaciecola agarilytica NO2 is a Gram-negative, ovoid-shaped bacterium that thrives in aerobic conditions with an optimal growth temperature of 32.0°C. This microbe exhibits characteristics typical of many members within the Paraglaciecola genus, known for their adaptation to cold marine environments. ↵↵The Gram-negative cell wall structure of P. agarilytica NO2 suggests the presence of an outer membrane containing lipopolysaccharides, which may play a role in its interaction with the surrounding environment. As an aerobic organism, it relies on oxygen for its metabolic processes, indicating a potential preference for oxygen-rich habitats, which could include coastal or upwelling zones where nutrient availability is high.↵↵The optimal growth temperature of 32.0°C suggests a capability for survival and metabolic activity at relatively moderate temperatures, which may enable this microbe to thrive in diverse aquatic environments, including those influenced by thermal fluctuations. This adaptability allows P. agarilytica NO2 to exploit various ecological niches, potentially contributing to the microbial dynamics within its habitat. ↵↵Overall, the traits of Paraglaciecola agarilytica NO2 highlight its role in the microbial community, where it may participate in biogeochemical cycling in aquatic ecosystems, particularly in regions where oxygen levels are favorable for aerobic metabolism and where temperature variations are common." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Paraglaciecola chathamensis Gram-negative ovoid aerobic 32 mesophilic 1125747 BAEK00000000.1 Bac0010971 Paraglaciecola arctica BSs20135 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Paraglaciecola arctica 493475 BAEO00000000.1 Bac0010972 Gordonia terrae NBRC 100016 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia terrae 1089454 BAFD00000000.1 Bac0010973 Rheinheimera nanhaiensis E407-8 "Rheinheimera nanhaiensis E407-8 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. This microbial strain has an optimal growth temperature of 37.0°C, indicating its potential adaptation to warm environments, which may be reflective of its natural habitat. ↵↵The Gram-negative nature of Rheinheimera nanhaiensis E407-8 suggests the presence of an outer membrane containing lipopolysaccharides, a trait commonly associated with this group of bacteria that can influence its interactions with the surrounding environment. The rod shape may provide advantages in motility and nutrient acquisition, which could be particularly beneficial in diverse ecological niches.↵↵Given its facultative lifestyle, Rheinheimera nanhaiensis E407-8 may play a versatile role in carbon cycling within its ecosystem, as it can metabolize organic compounds both in the presence and absence of oxygen. This adaptability may enable it to occupy ecological niches that fluctuate between aerobic and anaerobic conditions, contributing to microbial community dynamics. Its ability to grow optimally at 37.0°C also suggests a potential relationship with warm-blooded hosts or environments that experience elevated temperatures, thereby implicating it in processes that involve nutrient turnover and energy flow in its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera nanhaiensis Gram-negative rod facultative aerobe/anaerobe 37 mesophilic 562729 BAFK00000000.1 Bac0010974 Candidatus Brocadia sinica JPN1 Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Brocadia Candidatus Brocadia sinica 1197129 BAFN00000000.1 Bac0010975 Austwickia chelonae NBRC 105200 Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Austwickia Austwickia chelonae aerobic 1184607 BAGZ00000000.1 Bac0010976 Gordonia namibiensis NBRC 108229 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia namibiensis 1208314 BAHE00000000.1 Bac0010977 Bacteroides pyogenes JCM 6292 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides pyogenes 1235809 BAIQ00000000.1 Bac0010978 Bacteroides pyogenes DSM 20611 = JCM 6294 "Bacteroides pyogenes DSM 20611 (also known as JCM 6294) is a Gram-negative bacterium belonging to the genus Bacteroides, which is noted for its role in the human microbiome and its importance in anaerobic digestion. This species is part of a diverse group of bacteria that are predominantly found in the gastrointestinal tract of humans and animals, where they contribute significantly to the breakdown of complex carbohydrates and proteins. ↵↵Bacteroides pyogenes exhibits the characteristic features of Gram-negative bacteria, including a thin peptidoglycan layer surrounded by an outer membrane, which plays a crucial role in its resistance to certain antibiotics and environmental stresses. While the specific metabolic pathways and ecological interactions of Bacteroides pyogenes are not detailed here, its presence in the gut microbiota suggests that it may participate in symbiotic relationships with host organisms, potentially influencing nutrient absorption and immune system modulation.↵↵Furthermore, members of the Bacteroides genus are known to produce various enzymes that facilitate the fermentation of dietary fibers, thereby contributing to energy metabolism in the host. The ecological role of Bacteroides pyogenes, similar to other Bacteroides species, likely extends to maintaining gut homeostasis, highlighting the importance of this microbe in both health and disease contexts. Overall, Bacteroides pyogenes exemplifies the complexity of microbial ecosystems and the critical functions they perform in supporting host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides pyogenes negative 1121100 BAIR00000000.1 Bac0010979 Bacteroides graminisolvens DSM 19988 = JCM 15093 "Bacteroides graminisolvens DSM 19988 = JCM 15093 is a Gram-negative, non-spore-forming rod that thrives under anaerobic conditions, with an optimal growth temperature of approximately 32.0°C. This species belongs to the genus Bacteroides, which is well-known for its role in the degradation of complex polysaccharides in various environments, particularly in the gastrointestinal tracts of animals.↵↵As a member of the Bacteroidetes phylum, Bacteroides graminisolvens contributes to the microbial diversity and functionality of anaerobic ecosystems. Its ability to metabolize plant-derived carbohydrates may facilitate nutrient cycling and energy flow within its habitat, potentially influencing the overall health and stability of microbial communities. The non-spore-forming nature of this organism suggests that it relies on stable environmental conditions for survival and proliferation, which is consistent with its adaptations to specific ecological niches.↵↵The ecological significance of Bacteroides graminisolvens may extend to its interactions with other microbial species, particularly in the context of symbiotic relationships within the gut microbiome or other anaerobic environments. Understanding the metabolic capabilities and ecological roles of such organisms is crucial for elucidating their contributions to nutrient cycling and their potential applications in biotechnology and health-related fields." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides graminisolvens Gram-negative rod non-motile anaerobic 32 mesophilic non-spore-forming 1121097 BAJS00000000.1 Bac0010980 Paenibacillus popilliae ATCC 14706 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus popilliae 1212764 BALG00000000.1 Bac0010981 Acetobacter aceti NBRC 14818 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter aceti 887700 BAMU00000000.1 Bac0010982 Acetobacter cibinongensis 4H-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter cibinongensis 146475 BAMV00000000.1 Bac0010983 Acetobacter orientalis 21F-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter orientalis 146474 BAMX00000000.1 Bac0010984 Acetobacter orleanensis JCM 7639 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter orleanensis aerobic 1231342 BAMY00000000.1 Bac0010985 Acidocella aminolytica 101 = DSM 11237 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidocella Acidocella aminolytica 1120923 BANC00000000.1 Bac0010986 Gluconobacter frateurii M-2 "Gluconobacter frateurii M-2 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for its ability to oxidize a wide range of substrates, including sugars and alcohols, which positions it as a potentially valuable microbe in biotechnological applications, particularly in the food and fermentation industries. ↵↵As a member of the Gluconobacter genus, G. frateurii M-2 is expected to possess metabolic pathways that enable it to convert ethanol to acetic acid, a trait commonly associated with other members of this group. The Gram-negative cell wall structure of G. frateurii M-2, which includes an outer membrane composed of lipopolysaccharides, may influence its interactions within its environment, particularly in terms of resistance to certain antimicrobial agents.↵↵The rod shape of G. frateurii M-2 facilitates mobility and colonization in various substrates, which could enhance its role in fermentation processes. Understanding the metabolic capabilities and ecological role of this strain could provide insights into its utility in industrial microbiology, especially in the production of vinegar and other fermented products. Moreover, the adaptability of G. frateurii M-2 to diverse environments may offer opportunities for further exploration in bioconversion processes, highlighting its potential significance in sustainable biotechnology approaches." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter frateurii Gram-negative rod 1231354 BANG00000000.1 Bac0010987 Komagataeibacter europaeus NBRC 3261 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter europaeus 1234669 BANI00000000.1 Bac0010988 Pediococcus acidilactici NGRI 0510Q "Pediococcus acidilactici NGRI 0510Q is a Gram-positive, nonsporulating coccus that exhibits anaerobic metabolism and is classified as a chemoheterotroph. This microorganism thrives optimally at a temperature of 30.0 degrees Celsius and is capable of utilizing various organic compounds as energy sources. Its habitat encompasses multiple environments, which suggests a versatile ecological adaptability.↵↵As a member of the Lactobacillaceae family, Pediococcus acidilactici is notable for its role in fermentation processes, particularly in the production of lactic acid. This trait is significant in various food applications, where it contributes to the preservation and flavor development of fermented products. The ability of this organism to thrive in anaerobic conditions further underscores its importance in environments where oxygen levels are limited.↵↵The ecological versatility and metabolic capabilities of Pediococcus acidilactici NGRI 0510Q highlight its potential utility in biotechnological applications, particularly in the food industry. Its presence in diverse habitats may also suggest a role in the microbial community dynamics, potentially influencing the fermentation processes of other microorganisms in its environment." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1229281 BANK00000000.1 Bac0010989 Acidovorax sp. MR-S7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. MR-S7 1268622 BANP00000000.1 Bac0010990 Gordonia amicalis NBRC 100051 = JCM 11271 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia amicalis aerobic 29 mesophilic 1220574 BANS00000000.1 Bac0010991 Gordonia hirsuta DSM 44140 = NBRC 16056 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia hirsuta aerobic 1121927 BANT00000000.1 Bac0010992 Gluconobacter thailandicus NBRC 3255 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter thailandicus 1291534 BAON00000000.1 Bac0010993 Gordonia malaquae NBRC 108250 "Gordonia malaquae NBRC 108250 is a Gram-positive, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This species is part of the genus Gordonia, which is known for its ability to degrade various organic compounds, indicating a potential role in bioremediation processes. The Gram-positive nature of G. malaquae suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in diverse environments.↵↵The aerobic requirement of G. malaquae indicates that it relies on oxygen for its metabolic processes, positioning it as a potential participant in aerobic microbial communities. The optimal growth temperature of 29.0°C suggests that this microbe is well-suited for environments that are moderately warm, which could include soil or decaying organic matter where it may contribute to nutrient cycling.↵↵Understanding the metabolic capabilities of G. malaquae and its preferred growth conditions can provide insights into its ecological roles, particularly in the degradation of complex organic substances. This trait may facilitate its utilization in biotechnological applications, as it could be harnessed for the bioconversion of pollutants in aerated systems. The ecological significance of G. malaquae lies in its potential to enhance the efficiency of natural degradation processes in its native habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia malaquae Gram-positive rod aerobic 29 mesophilic 1223542 BAOP00000000.1 Bac0010994 Gordonia paraffinivorans NBRC 108238 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia paraffinivorans 29 mesophilic 1223543 BAOQ00000000.1 Bac0010995 Anoxybacillus flavithermus NBRC 109594 "Anoxybacillus flavithermus NBRC 109594 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and thrive at an optimal temperature of 60.0°C. This species is classified as a facultative aerobe, indicating its capacity to grow in both aerobic and anaerobic environments. ↵↵The specialized habitat of A. flavithermus suggests that it occupies niche ecological settings, potentially including hot springs or thermophilic environments, where elevated temperatures are prevalent. The sporulation capability of this microbe may confer advantages in its natural environment, allowing it to withstand extreme conditions and periods of nutrient scarcity.↵↵Understanding the physiological traits of A. flavithermus can provide insights into its role in biogeochemical cycles within its specialized habitat. The ability to thrive in high-temperature environments highlights its potential contributions to microbial diversity and ecosystem functioning in thermal niches. Moreover, the facultative aerobic metabolism may enable this organism to adapt to fluctuating oxygen levels, further emphasizing its ecological versatility. This adaptability not only supports the survival of A. flavithermus in extreme conditions but also suggests potential applications in biotechnology where thermophilic organisms are utilized for various industrial processes." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus flavithermus Positive Rod Yes 1 1 Facultative aerobe 60 Thermophilic Specialized Free living Sporulating 1315967 BARH00000000.1 Bac0010996 Agarivorans albus MKT 106 "Agarivorans albus MKT 106 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments at an optimal growth temperature of 37.0°C. This organism is characterized by its non-spore-forming nature, which suggests that it relies on other survival strategies rather than sporulation to withstand environmental stressors. ↵↵As a member of the Agarivorans genus, A. albus MKT 106 likely participates in the degradation of agar, a polysaccharide derived from red algae, thereby playing a potential role in the carbon cycle within its ecological niche. The ability to metabolize such complex carbohydrates may confer an advantage in marine environments where organic matter from algal sources is abundant. Understanding the metabolic pathways and ecological interactions of A. albus MKT 106 could provide insights into the microbial processes that support nutrient cycling in these aquatic systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Agarivorans Agarivorans albus Gram-negative rod aerobic 37 mesophilic non-spore-forming 1331007 BARX00000000.1 Bac0010997 Helicobacter fennelliae MRY12-0050 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter fennelliae 1325130 BASD00000000.1 Bac0010998 Lentilactobacillus otakiensis DSM 19908 = JCM 15040 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus otakiensis 1423780 BASH00000000.1 Bac0010999 Caenibius tardaugens NBRC 16725 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Caenibius Caenibius tardaugens 1219035 BASZ00000000.1 Bac0011000 Halarchaeum acidiphilum MH1-52-1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halarchaeum Halarchaeum acidiphilum 1261545 BATA00000000.1 Bac0011001 Limimaricola cinnabarinus LL-001 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Limimaricola Limimaricola cinnabarinus 1337093 BATB00000000.1 Bac0011002 Brevundimonas abyssalis TAR-001 "Brevundimonas abyssalis TAR-001 is a Gram-negative, aerobic bacterium that thrives optimally at a temperature of 16.0 °C. This psychrophilic microbe, belonging to the genus Brevundimonas, exhibits a preference for cooler environments, suggesting a potential adaptation to marine or other cold habitats. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer and an outer membrane, which may confer advantages in terms of nutrient uptake and resistance to certain environmental stresses.↵↵The aerobic nature of Brevundimonas abyssalis TAR-001 indicates that it requires oxygen for its metabolic processes, positioning it as a key player in biogeochemical cycles within its ecological niche. The organism’s adaptation to low temperatures and aerobic conditions suggests potential roles in the degradation of organic materials in cold environments, possibly influencing nutrient cycling in oligotrophic ecosystems.↵↵Interestingly, the optimal growth temperature of 16.0 °C aligns with the thermal profiles of many deep-sea or polar marine environments, where microbial communities are crucial for maintaining ecosystem dynamics. This highlights the importance of Brevundimonas abyssalis TAR-001 in understanding microbial diversity and function in extreme habitats, as well as its potential applications in biotechnology, particularly in cold-adapted processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas abyssalis Gram-negative aerobic 16 psychrotolerant 1391729 BATC00000000.1 Bac0011003 Pseudomonas alcaligenes NBRC 14159 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Aquipseudomonas Aquipseudomonas alcaligenes 43263 BATI00000000.1 Bac0011004 Vibrio azureus NBRC 104587 "Vibrio azureus NBRC 104587 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe belongs to the Vibrio genus, which is notable for its motility and presence in aquatic environments. The Gram-negative classification indicates that V. azureus possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this group of bacteria. ↵↵The rod shape and motility of Vibrio species typically facilitate their adaptation to diverse ecological niches, particularly in marine ecosystems. While specific details regarding its pathogenicity or ecological role are not provided, members of the Vibrio genus are often associated with marine environments, which can suggest potential interactions with aquatic life forms. ↵↵The optimal growth temperature of 25.0°C is indicative of a mesophilic preference, aligning with conditions commonly found in temperate marine habitats. This temperature range may favor the growth of V. azureus in coastal waters where temperatures are stable and conducive to microbial proliferation.↵↵Further ecological insights suggest that V. azureus may play a role in nutrient cycling within its aquatic habitat, contributing to the degradation of organic matter or engaging in symbiotic relationships with marine organisms. Its presence in the microbiome of marine ecosystems could be essential for maintaining ecological balance, particularly in nutrient-rich environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio azureus Gram-negative rod 25 mesophilic 1219077 BATL00000000.1 Bac0011005 Geobacillus thermoleovorans B23 "Geobacillus thermoleovorans B23 is a rod-shaped thermophilic bacterium known for its ability to thrive at elevated temperatures. This organism is part of the Geobacillus genus, which is characterized by its robust heat resistance and metabolic versatility. G. thermoleovorans B23 demonstrates the potential for biotechnological applications, particularly in processes that require high-temperature conditions, such as industrial enzyme production and the degradation of complex organic materials.↵↵The rod shape of G. thermoleovorans B23 facilitates efficient nutrient uptake and motility in its thermophilic environment, contributing to its survival and metabolic activity in extreme conditions. As a thermophile, this species is likely to possess specialized adaptations, such as heat-stable enzymes, which enable it to maintain cellular functions and structural integrity at temperatures that would denature proteins in mesophilic organisms.↵↵Furthermore, the ability of G. thermoleovorans B23 to metabolize a variety of substrates at high temperatures highlights its potential role in biogeochemical cycles, particularly in geothermal ecosystems. The adaptability of this organism may also provide insights into the evolutionary mechanisms that allow life to persist under extreme thermal stress, thereby enhancing our understanding of microbial diversity and resilience in hot environments." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus thermoleovorans Rod 1406857 BATY00000000.1 Bac0011006 Vibrio halioticoli NBRC 102217 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio halioticoli 1219072 BAUJ00000000.1 Bac0011007 Halalkalibacter wakoensis JCM 9140 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halalkalibacter Halalkalibacter wakoensis 1236970 BAUT00000000.1 Bac0011008 Halalkalibacter akibai JCM 9157 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halalkalibacter Halalkalibacter akibai 1236973 BAUV00000000.1 Bac0011009 Methylopila sp. Yamaguchi Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylopilaceae Methylopila Methylopila sp. Yamaguchi 1437817 BAUX00000000.1 Bac0011010 Xanthomonas arboricola pv. pruni str. MAFF 311562 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 1414836 BAVB00000000.1 Bac0011011 Cutibacterium acnes JCM 18909 "Cutibacterium acnes JCM 18909 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0 °C. This microbe is primarily host-associated, indicating its adaptation to living in association with human hosts, particularly in skin environments. ↵↵C. acnes is part of the normal skin microbiota and plays a critical role in maintaining skin health, although its abundance and activity can be influenced by various factors, including skin condition and environmental changes. Its anaerobic nature suggests that it thrives in oxygen-limited niches, such as sebaceous glands, where it can metabolize lipids and contribute to the skin's microbiome. ↵↵The presence of C. acnes is often explored in relation to skin health and disorders, particularly given its association with conditions like acne. However, it is essential to note that while its presence is consistent in healthy skin, its role can vary depending on the host's skin environment and other microbial interactions. Understanding C. acnes JCM 18909's specific contributions to skin ecology may provide insights into its complex relationship with host health and disease." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1302241 BAVM00000000.1 Bac0011012 Cutibacterium acnes JCM 18916 "Cutibacterium acnes JCM 18916 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives optimally at 37.0°C, an indicative temperature of its adaptation to host-associated environments. This anaerobic microbe is commonly found within the human skin microbiome, where it plays a crucial role in the skin's microbial ecosystem. Its anaerobic nature suggests a preference for low-oxygen environments, which aligns with its habitat, typically found in the sebaceous glands of the skin.↵↵C. acnes is recognized for its metabolic versatility, utilizing various substrates in the anaerobic conditions of the skin environment. The bacterium contributes to the maintenance of skin health by engaging in complex interactions with the host's immune system and other microbial inhabitants. Its presence is essential for the development and preservation of a balanced skin microbiota, which can influence the overall homeostasis of the skin.↵↵Understanding the role of C. acnes JCM 18916 in the skin microbiome underscores its significance in the context of human health. It exemplifies how certain microbes, despite being traditionally associated with skin conditions, can also play beneficial roles in maintaining skin health and preventing dysbiosis in the microbial community. This highlights the importance of microbiome research in comprehending the intricate relationships between host and microbial populations." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1302242 BAVN00000000.1 Bac0011013 Cutibacterium acnes JCM 18918 "Cutibacterium acnes JCM 18918 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic conditions and has an optimal growth temperature of 37.0°C. This microbe is primarily host-associated, indicating a close relationship with its host environment, which is typically the human skin. ↵↵As an anaerobic organism, Cutibacterium acnes JCM 18918 is adapted to environments with low oxygen levels, such as the sebaceous glands of the skin, where it plays a significant role in the skin microbiome. The bacterium is known for its involvement in the metabolism of lipids, which can influence the overall health of the skin. ↵↵The presence of Cutibacterium acnes in the human microbiota is often associated with various skin conditions, although the specific implications of this strain's activity within the host environment require further investigation. Understanding the ecological role of Cutibacterium acnes JCM 18918 could provide insights into the balance of microbial communities on the skin and their impact on dermatological health. Notably, this strain may contribute to the maintenance of skin homeostasis by competing with potentially pathogenic microbes and modulating the host immune response." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1302243 BAVO00000000.1 Bac0011014 Gracilibacillus boraciitolerans JCM 21714 "Gracilibacillus boraciitolerans JCM 21714 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its optimal growth temperature of 25.0°C. This microbe exhibits the hallmark features of the genus Gracilibacillus, which is known for its resilience in various environments. ↵↵As a spore-forming organism, G. boraciitolerans can endure adverse conditions, allowing it to persist in its habitat. The Gram-positive nature of this bacterium indicates a thick peptidoglycan layer in its cell wall, which is a common trait among many bacteria with significant ecological roles. The optimal growth temperature of 25.0°C suggests that G. boraciitolerans thrives in moderate environments, potentially aligning with temperate habitats.↵↵The traits of G. boraciitolerans may imply its ecological adaptability, possibly contributing to nutrient cycling or biogeochemical processes in its native environment. This adaptability to moderate temperatures and its sporulation capability may position G. boraciitolerans as a relevant organism in studies related to environmental resilience and microbial survival strategies. Further research could elucidate the specific ecological roles this bacterium plays, particularly in environments where temperature fluctuations occur." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gracilibacillus Gracilibacillus boraciitolerans Gram-positive rod motile 25 mesophilic spore-forming 1298598 BAVS00000000.1 Bac0011015 Paenibacillus pini JCM 16418 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus pini 1236976 BAVZ00000000.1 Bac0011016 Bacillus sp. JCM 19045 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. JCM 19045 1460639 BAWA00000000.1 Bac0011017 Bacillus sp. JCM 19046 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. JCM 19046 1460640 BAWB00000000.1 Bac0011018 Bacillus sp. JCM 19047 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. JCM 19047 1460641 BAWC00000000.1 Bac0011019 Nocardia seriolae N-2927 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia seriolae 1454200 BAWD00000000.2 Bac0011020 Rhodococcus wratislaviensis NBRC 100605 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus wratislaviensis 1219028 BAWF00000000.1 Bac0011021 Psychrobacter sp. JCM 18900 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. JCM 18900 1298608 BAWG00000000.1 Bac0011022 Psychrobacter sp. JCM 18901 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. JCM 18901 1298609 BAWH00000000.1 Bac0011023 Psychrobacter sp. JCM 18902 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. JCM 18902 1298607 BAWI00000000.1 Bac0011024 Geomicrobium sp. JCM 19037 Bacillati Bacillota Bacilli Caryophanales Geomicrobium Geomicrobium sp. JCM 19037 1460634 BAWZ00000000.1 Bac0011025 Vibrio sp. JCM 19052 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. JCM 19052 1460647 BAXJ00000000.1 Bac0011026 Corynebacterium glutamicum CS176 "Corynebacterium glutamicum CS176 is a Gram-positive bacterium known for its industrial significance, particularly in the production of amino acids and other biochemicals. This species is characterized by its rod-shaped morphology and presence of a distinctive cell wall structure typical of Gram-positive organisms, which includes a thick peptidoglycan layer. ↵↵Corynebacterium glutamicum CS176 is utilized extensively in biotechnology due to its ability to synthesize L-glutamate and L-lysine, making it a valuable organism in the food and pharmaceutical industries. The metabolic pathways of C. glutamicum have been well-studied, highlighting its proficiency in amino acid production and the potential for genetic engineering to enhance these capabilities further. ↵↵Furthermore, this strain has been shown to exhibit robust growth under various nutritional conditions, which allows for efficient fermentation processes. Its ability to utilize a wide range of carbon sources contributes to its versatility in industrial applications.↵↵Overall, Corynebacterium glutamicum CS176 exemplifies the utility of Gram-positive bacteria in biotechnological contexts, showcasing how microbial traits can be harnessed for economic and environmental benefits. The organism's metabolic flexibility may also provide insights into microbial adaptation and survival strategies in diverse ecological niches." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum positive 1718 BAYH00000000.1 Bac0011027 Edwardsiella piscicida RSB1309 "Edwardsiella piscicida RSB1309 is a Gram-negative, rod-shaped bacterium that demonstrates facultative anaerobic capabilities. This nonsporulating microbe has been isolated from diverse habitats, indicating its versatility in environmental adaptability. As a member of the genus Edwardsiella, it shares characteristics typical of this group, including the ability to thrive in both aerobic and anaerobic conditions, which may contribute to its persistence in fluctuating ecological niches.↵↵The facultative nature of E. piscicida RSB1309 suggests that it can utilize oxygen when available but can also switch to anaerobic metabolic pathways when necessary. This metabolic flexibility may enhance its survival in various environments, ranging from aquatic systems to sediments where oxygen levels can vary significantly.↵↵The isolation of E. piscicida RSB1309 from multiple habitats underscores the potential for this microbe to play significant roles in nutrient cycling and interactions within its ecosystem. This adaptability could facilitate its involvement in processes such as organic matter decomposition or nutrient transformation, reflecting its ecological importance in maintaining microbial diversity and function in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella piscicida Negative Rod No 1 2 Facultative Mesophilic Multiple Free living Nonsporulating 1263550 BAYU00000000.1 Bac0011028 Alpha proteobacterium Q-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Iodidimonadales Iodidimonadaceae Iodidimonas Iodidimonas nitroreducens 1236968 BAYV00000000.1 Bac0011029 Geobacter sp. OR-1 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. OR-1 1266765 BAZF00000000.1 Bac0011030 Paenibacillus sp. TCA20 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. TCA20 1499968 BBIW00000000.1 Bac0011031 Secundilactobacillus oryzae Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus oryzae 1202668 BBJM00000000.1 Bac0011032 Enterobacter sp. KINAN-G Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. KINAN-G 1535203 BBKD00000000.1 Bac0011033 Nonlabens ulvanivorans Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens ulvanivorans 906888 BBLG00000000.1 Bac0011034 Nonlabens tegetincola "Nonlabens tegetincola is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This microorganism thrives at an optimal temperature of 32.0°C, indicating a potential preference for moderate environmental conditions. ↵↵As a member of the diverse bacterial community, Nonlabens tegetincola likely plays a role in various ecological processes, although specific ecological niches or interactions have not been detailed in the available data. Its aerobic nature suggests that it may contribute to aerobic degradation processes, potentially influencing nutrient cycling in its habitat. The absence of sporulation indicates a reliance on vegetative growth for survival and reproduction, which may limit its resilience to extreme environmental stressors compared to spore-forming bacteria.↵↵Overall, the characteristics of Nonlabens tegetincola suggest it may be adapted to environments where oxygen is readily available, and its metabolic capabilities could be significant in maintaining the balance of microbial communities in such niches. Further studies could shed light on its ecological roles and potential applications in biotechnology or environmental management." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens tegetincola Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 323273 BBML00000000.1 Bac0011035 Vibrio maritimus Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio maritimus 990268 BBMR00000000.1 Bac0011036 Pseudescherichia vulneris NBRC 102420 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pseudescherichia Pseudescherichia vulneris aerobic 1115515 BBMZ00000000.1 Bac0011037 Jejuia pallidilutea Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Jejuia Jejuia pallidilutea 504487 BBNY00000000.1 Bac0011038 Microcystis aeruginosa NIES-44 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 449439 BBPA00000000.1 Bac0011039 Ralstonia sp. NT80 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. NT80 1218247 BBQS00000000.1 Bac0011040 Acinetobacter calcoaceticus P23 "Acinetobacter calcoaceticus P23 is a Gram-negative bacterium primarily found in soil environments. This organism is classified as an aerobic microbe, necessitating oxygen for its growth and metabolic processes. Its presence in soil highlights its potential role in various biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling.↵↵The Gram-negative nature of A. calcoaceticus P23 indicates a distinctive cell wall structure characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This structural feature contributes to its resilience in diverse environmental conditions, allowing it to thrive in soil habitats where it may encounter fluctuating moisture levels and varying nutrient availability.↵↵The aerobic requirement of A. calcoaceticus P23 suggests that it may compete for resources with other soil microbes, particularly those that are facultative anaerobes or obligate anaerobes. Its ability to utilize oxygen could provide an advantage in the aerobic zones of soil, where it may play a critical role in the oxidation of organic compounds. Understanding the ecological functions of A. calcoaceticus P23 could reveal insights into its contributions to soil health, including its potential involvement in enhancing soil fertility and influencing microbial community dynamics within its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus Negative Aerobe soil; soil environment 471 BBQU00000000.1 Bac0011041 Alicycliphilus sp. B1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Alicycliphilus Alicycliphilus sp. B1 1603291 BBSJ00000000.1 Bac0011042 Sphingomonas changbaiensis NBRC 104936 "Sphingomonas changbaiensis NBRC 104936 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This organism is part of the diverse Sphingomonad family, which is characterized by its unique lipid composition, particularly the presence of sphingolipids in its membrane structure. ↵↵The adaptability of Sphingomonas changbaiensis to aerobic environments suggests its potential role in biogeochemical cycles, particularly in the degradation of complex organic compounds in its native habitat. While specific ecological niches of this strain have not been detailed, members of the Sphingomonas genus are often found in soil and aquatic environments, where they contribute to the breakdown of pollutants. This metabolic versatility may provide insights into its possible applications in bioremediation processes, especially in environments contaminated with recalcitrant organic materials. ↵↵Understanding the physiological traits of Sphingomonas changbaiensis can inform further research into its ecological roles and potential uses in environmental microbiology. Its optimal growth temperature indicates a preference for moderate environments, which may reflect its adaptation to specific ecological contexts, thus highlighting the importance of studying this bacterium's interactions within its ecosystem." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas changbaiensis Gram-negative rod aerobic 29 mesophilic 1219043 BBWU00000000.1 Bac0011043 Flavihumibacter petaseus NBRC 106054 "Flavihumibacter petaseus NBRC 106054 is a Gram-positive, rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 29.0°C. This species is characterized by its ability to utilize oxygen, suggesting an adaptation to environments where aerobic conditions prevail. The Gram-positive nature of F. petaseus indicates a thicker peptidoglycan layer in its cell wall, which may contribute to its survival and structural integrity in various habitats.↵↵While specific ecological roles and interactions of F. petaseus are not detailed in the available data, the traits observed suggest that it may play a role in nutrient cycling within its environment. Its optimal growth temperature aligns with that of many mesophilic organisms, indicating a potential presence in terrestrial or aquatic ecosystems where temperatures remain moderate. The aerobic requirement further implies that it may be involved in processes such as organic matter decomposition or the oxidation of compounds in oxygen-rich environments.↵↵Overall, the physiological traits of Flavihumibacter petaseus NBRC 106054 reflect its adaptation to specific ecological niches, potentially contributing to the microbial diversity and metabolic processes within those environments. Future studies may elucidate its specific roles and interactions within microbial communities." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavihumibacter Flavihumibacter petaseus Gram-positive rod non-motile aerobic 29 mesophilic 1220578 BBWV00000000.1 Bac0011044 Ideonella sakaiensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Piscinibacter Piscinibacter sakaiensis 1114981 BBYR00000000.1 Bac0011045 Secundilactobacillus mixtipabuli Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus mixtipabuli 1435342 BCMF00000000.1 Bac0011046 Secundilactobacillus silagei Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus silagei 1293415 BCMG00000000.1 Bac0011047 Secundilactobacillus pentosiphilus Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus pentosiphilus 1714682 BCMH00000000.1 Bac0011048 Secundilactobacillus silagincola Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus silagincola 1714681 BCMJ00000000.1 Bac0011049 Thermodesulfovibrio aggregans "Thermodesulfovibrio aggregans is a Gram-negative, rod-shaped bacterium characterized by its anaerobic metabolism and optimal growth temperature of 45.0 °C. This organism does not form spores, which suggests a potential limitation in its ability to withstand extreme environmental stressors typically associated with spore-forming bacteria. ↵↵As a member of the genus Thermodesulfovibrio, T. aggregans is likely involved in anaerobic sulfate-reducing processes, which are critical in various biogeochemical cycles, particularly in environments rich in organic matter and sulfate, such as sediments and hydrothermal vents. The optimal growth temperature aligns with the thermophilic nature of its genus, indicating that T. aggregans may thrive in high-temperature habitats. ↵↵The absence of sporulation in T. aggregans indicates that it may be less resilient to desiccation or other harsh conditions compared to spore-forming microorganisms. This trait may influence its ecological niche, limiting its distribution to more stable, moist environments conducive to anaerobic activity. The unique combination of its metabolic capabilities and growth characteristics positions T. aggregans as an important player in the nutrient cycling of sulfur in thermophilic ecosystems, potentially influencing the overall microbial community structure and function in such habitats." Pseudomonadati Nitrospirota Thermodesulfovibrionia Thermodesulfovibrionales Thermodesulfovibrionaceae Thermodesulfovibrio Thermodesulfovibrio aggregans Gram-negative rod non-motile anaerobic 45 thermophilic non-spore-forming 86166 BCNO00000000.1 Bac0011050 Paludibacter jiangxiensis Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Paludibacteraceae Paludibacter Paludibacter jiangxiensis 681398 BDCR00000000.1 Bac0011051 Planomonospora sphaerica Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Planomonospora Planomonospora parontospora 29 mesophilic spore-forming 58119 BDCX00000000.1 Bac0011052 Microbacterium sp. HM58-2 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. HM58-2 1778770 BDCY00000000.1 Bac0011053 Tetragenococcus halophilus subsp. flandriensis "Tetragenococcus halophilus subsp. flandriensis is a halophilic, cocci-shaped bacterium distinguished by its adaptation to high-salinity environments. As a subspecies of Tetragenococcus halophilus, it shares the characteristic traits of its genus, which is known for its resilience in extreme conditions. The coccoid morphology of T. halophilus subsp. flandriensis is significant, as it reflects the organism's evolutionary adaptations to osmotic stress typically encountered in saline habitats.↵↵This bacterium is primarily isolated from environments such as salt lakes and salted food products, suggesting its role in the fermentation processes common in high-salinity conditions. The halophilic nature of T. halophilus subsp. flandriensis implies that it possesses specialized mechanisms for maintaining cellular integrity and function in environments with elevated salt concentrations. ↵↵Understanding the physiological properties of T. halophilus subsp. flandriensis could provide insights into the microbial diversity of hypersaline ecosystems and the potential biotechnological applications of halophilic microorganisms. Moreover, its ability to thrive in such extreme conditions may offer clues to the evolutionary strategies that enable life to persist in environments that are inhospitable to many other forms of life. This resilience underscores the importance of halophilic microorganisms in biogeochemical cycles within saline ecosystems, where they may play critical roles in nutrient cycling and organic matter decomposition." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus halophilus Cocci 1513898 BDEA00000000.1 Bac0011054 Acetobacter pasteurianus NBRC 3188 "Acetobacter pasteurianus NBRC 3188 is a Gram-negative, nonsporulating bacterium that functions as a chemoheterotroph, thriving optimally at a temperature of 30°C. This species is primarily isolated from dairy environments, indicating its adaptation to habitats rich in organic compounds, such as those found in milk and dairy products. ↵↵As an aerobic organism, A. pasteurianus requires oxygen for its metabolic processes, a characteristic that facilitates its growth in oxygen-rich environments. Its ability to utilize various organic substrates allows it to play a significant role in the fermentation processes associated with dairy products, potentially influencing the flavor and quality of fermented dairy items.↵↵The ecological relevance of A. pasteurianus extends to its contributions to the microbial community in dairy environments, where it may interact with other microorganisms, thereby affecting fermentation dynamics and product characteristics. The bacterium's metabolic capabilities suggest that it could be harnessed for biotechnological applications in the dairy industry, particularly in the production of vinegar and other fermented products. Understanding the specific interactions and roles of A. pasteurianus within its habitat could provide insights into optimizing fermentation processes and enhancing product quality in dairy production." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1226663 BDES00000000.1 Bac0011055 Acetobacter pasteurianus NBRC 3299 "Acetobacter pasteurianus NBRC 3299 is a Gram-negative, nonsporulating bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This microbe thrives in aerobic conditions, with an optimal growth temperature of 30.0°C. Isolated from dairy environments, A. pasteurianus plays a significant role in the fermentation processes associated with dairy products, particularly in the production of vinegar and other fermented foods.↵↵As an aerobic organism, A. pasteurianus requires oxygen for its metabolic processes, which is consistent with its habitat in dairy environments where oxygen is readily available. Its nonsporulating nature indicates that it does not form spores, which may influence its survival strategies and ecological interactions within its niche. The bacterium's ability to thrive at 30.0°C suggests adaptation to the moderate temperatures commonly found in dairy processing and storage conditions.↵↵Insights into the metabolic capabilities of A. pasteurianus could provide valuable information for enhancing fermentation processes and improving product quality in dairy industries. Its role in converting alcohol to acetic acid highlights its potential utility in biotechnological applications, particularly in the production of vinegar and other acidic products, thus emphasizing its importance in both ecological and commercial contexts within the dairy sector." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1226665 BDEZ00000000.1 Bac0011056 Mariprofundus micogutta Pseudomonadati Pseudomonadota Candidatius Mariprofundia Mariprofundales Mariprofundaceae Mariprofundus Mariprofundus micogutta 1921010 BDFD00000000.1 Bac0011057 Desulfoplanes formicivorans Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfoplanaceae Desulfoplanes Desulfoplanes formicivorans anaerobic 1592317 BDFE00000000.1 Bac0011058 Arenibacter sp. NBRC 103722 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Arenibacter Arenibacter sp. NBRC 103722 1113929 BDGL00000000.2 Bac0011059 Pseudomonas sp. SCT Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SCT 412955 BDJA00000000.1 Bac0011060 Nocardioides sp. PD653 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. PD653 393303 BDJG00000000.1 Bac0011061 Carboxydothermus pertinax "Carboxydothermus pertinax is a rod-shaped, strictly anaerobic bacterium that thrives at an optimal temperature of 45.0°C. As a member of the microbial community, C. pertinax is capable of utilizing carbon monoxide as a carbon and energy source, which suggests its potential involvement in biogeochemical cycles, particularly in environments rich in organic material and carbon compounds.↵↵The adaptation to an anaerobic lifestyle indicates that C. pertinax occupies environments where oxygen is limited or absent, such as deep-sea hydrothermal vents, anoxic sediments, or other geothermal habitats. Its ability to metabolize carbon monoxide may also contribute to the detoxification of this gas in its native environment, thereby influencing local carbon cycling dynamics. ↵↵Moreover, the thermal preference of C. pertinax highlights its potential role in high-temperature ecosystems, where it may interact with other extremophiles, contributing to microbial consortia that thrive under similar conditions. The physiological traits of C. pertinax underscore its importance in understanding microbial ecology in extreme environments and its potential applications in biotechnological processes that exploit anaerobic metabolism and carbon monoxide utilization." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Carboxydothermus Carboxydothermus pertinax rod anaerobic 45 thermophilic 870242 BDJK00000000.1 Bac0011062 Brevundimonas sp. SH203 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. SH203 345167 BDMM00000000.1 Bac0011063 Photobacterium damselae subsp. piscicida "Photobacterium damselae subsp. piscicida is a Gram-negative bacterium recognized for its relevance in aquatic environments, particularly concerning fish health. This subspecies is a member of the Vibrionaceae family and is characterized by its rod-shaped morphology. As a marine bacterium, P. damselae subsp. piscicida is typically found in coastal waters, where it may engage in various ecological interactions with marine organisms.↵↵The Gram-negative nature of P. damselae subsp. piscicida indicates the presence of an outer membrane that contains lipopolysaccharides, which may play a role in its environmental adaptability and interactions with host organisms. This structural characteristic is commonly associated with bacteria that inhabit diverse aquatic habitats, providing insights into their survival strategies in fluctuating conditions.↵↵Ecologically, P. damselae subsp. piscicida's presence in marine ecosystems may influence microbial community dynamics, particularly in relation to its interactions with fish and other aquatic organisms. Its metabolic capabilities are adapted to the marine environment, which may allow it to utilize various organic compounds present in seawater. This adaptability underscores the potential for P. damselae subsp. piscicida to contribute to nutrient cycling within these ecosystems, highlighting its role in the broader context of marine microbiology. Overall, the study of this bacterium offers valuable insights into the complex interactions within marine microbiomes and the health of aquatic life." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae negative 38294 BDMQ00000000.1 Bac0011064 Novimethylophilus kurashikiensis Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Novimethylophilus Novimethylophilus kurashikiensis 1825523 BDOQ00000000.1 Bac0011065 Colwellia marinimaniae "Colwellia marinimaniae is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 5.0 °C and is classified as an anaerobic organism. As an organotroph and chemotroph, C. marinimaniae derives its energy from organic compounds, highlighting its reliance on specific environmental substrates for growth and metabolism. ↵↵The adaptation of C. marinimaniae to cold, anaerobic environments suggests a specialized niche that may involve the breakdown of organic matter in marine ecosystems, particularly in deep-sea or polar habitats. Its metabolic capabilities allow it to play a potential role in biogeochemical cycles, particularly in nutrient recycling processes in the ocean. The physiological traits of this bacterium could also inform studies on microbial life in extreme environments, offering insights into the adaptations necessary for life in low-temperature, anoxic conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia marinimaniae Gram-negative rod anaerobic 5 organotroph; chemotroph psychrophilic 1513592 BDQM00000000.1 Bac0011066 Bacterium BMS3Abin04 bacterium BMS3Abin04 2005712 BDSW00000000.1 Bac0011067 Cupidesulfovibrio sp. HK-II Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio sp. HK-II 2009266 BDUJ00000000.1 Bac0011068 Staphylococcus aureus M1K003 "Staphylococcus aureus M1K003 is a Gram-positive, cocci-shaped bacterium that typically arranges itself in clusters or singles. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. S. aureus M1K003 has an optimal growth temperature of 3.0°C, indicating a preference for cooler conditions compared to many other strains of Staphylococcus aureus, which often prefer higher temperatures. ↵↵The habitat of S. aureus M1K003 is primarily host-associated, suggesting that it has adapted to living in close association with a host organism, likely utilizing the host’s resources for growth and survival. The ability to exist in clusters may confer advantages in colonization and persistence within the host environment. ↵↵Given its unique temperature preference and host-associated habitat, S. aureus M1K003 may play a role in specific ecological niches where cooler temperatures prevail, potentially influencing microbial dynamics in its environment. Further exploration of its physiological traits and interactions within host systems could provide insights into its ecological function and potential applications in microbiology and biotechnology." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 BDVT00000000.1 Bac0011069 Archaeon HR05 archaeon HR05 2035441 BEHH00000000.1 Bac0011070 Archaeon HR06 archaeon HR06 2035442 BEHI00000000.1 Bac0011071 Bacterium HR14 bacterium HR14 2035409 BEHQ00000000.1 Bac0011072 Bacterium HR17 Candidatus Fervidibacterota Fervidibacteria Fervidibacterales Fervidibacteraceae Fervidibacter Candidatus Fervidibacter japonicus 2035412 BEHT00000000.1 Bac0011073 Candidatus Thermoflexus japonica Bacillati Chloroflexota Thermoflexia Thermoflexales Thermoflexaceae Thermoflexus Candidatus Thermoflexus japonica 2035417 BEHY00000000.1 Bac0011074 Bacterium HR23 bacterium HR23 2035418 BEHZ00000000.1 Bac0011075 Microcystis aeruginosa NIES-1211 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 449534 BEIV00000000.1 Bac0011076 Mycobacterium sp. shizuoka-1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. shizuoka-1 2039281 BEWG00000000.1 Bac0011077 Desulfurococcaceae archaeon AG1 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcaceae archaeon AG1 2027460 BEWT00000000.1 Bac0011078 Prevotella sp. MGM2 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. MGM2 gut 2033406 BEWW00000000.1 Bac0011079 Lentilactobacillus kosonis Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus kosonis 2810561 BEXA00000000.1 Bac0011080 Apilactobacillus micheneri Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus micheneri 1899430 BEXE00000000.1 Bac0011081 Microcystis aeruginosa NIES-87 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 449440 BFAC00000000.1 Bac0011082 Leptospira johnsonii Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira johnsonii 1917820 BFAY00000000.1 Bac0011083 Leptospira ellinghausenii Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira ellinghausenii 1917822 BFAZ00000000.1 Bac0011084 Azospira sp. I13 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Azospira Azospira sp. I13 1765050 BFBP00000000.1 Bac0011085 Candidatus Phycosocius bacilliformis BOTRYCO-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Candidatus Phycosocius Candidatus Phycosocius bacilliformis 1445552 BFBR00000000.1 Bac0011086 Lawsonibacter asaccharolyticus Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Lawsonibacter Lawsonibacter asaccharolyticus 2108523 BFBT00000000.1 Bac0011087 Paenibacillus sp. 598K Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 598K 1117987 BFBX00000000.1 Bac0011088 Escherichia coli ECSC036 "Escherichia coli ECSC036 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0 °C, reflecting its adaptation to warm-blooded hosts. As a facultative anaerobe, E. coli ECSC036 can grow in both the presence and absence of oxygen, which contributes to its versatility in various environments, particularly within host-associated habitats.↵↵The ability of E. coli ECSC036 to thrive in host-associated environments suggests a potential role in the microbial communities residing in the gastrointestinal tracts of mammals. These communities are known to be essential for digestive processes and nutrient absorption, indicating that E. coli ECSC036 may play a significant part in maintaining host health. The combination of its Gram-negative cell structure and rod shape may also influence its interactions with the host immune system, potentially affecting its survival and proliferation within host tissues.↵↵This strain exemplifies the ecological significance of E. coli in host-associated environments, highlighting its adaptability and potential contributions to microbial homeostasis. Further research into the specific interactions of E. coli ECSC036 within its host could provide valuable insights into the roles of such bacteria in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFIF00000000.1 Bac0011089 Escherichia coli ECSC038 "Escherichia coli ECSC038 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. E. coli ECSC038 has an optimal growth temperature of 37.0°C, which aligns with the body temperature of warm-blooded hosts, suggesting its adaptation to living within host-associated habitats. ↵↵Given its facultative anaerobic nature, E. coli ECSC038 can efficiently utilize available oxygen and switch to fermentation processes when oxygen is scarce, a trait that enhances its survival in diverse physiological environments, including the intestinal tract of mammals. The ability to grow in pairs and singles may suggest a flexible response to varying nutrient conditions, enabling efficient colonization and nutrient acquisition in host-associated niches.↵↵Overall, the ecological insights gleaned from the traits of E. coli ECSC038 emphasize its role as a versatile inhabitant of host organisms, likely playing a significant part in the microbial community dynamics within the gastrointestinal tract. This adaptability may also facilitate interactions with other microorganisms, influencing the overall health and metabolism of its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFIH00000000.1 Bac0011090 Escherichia coli ECSC065 "Escherichia coli ECSC065 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which facilitates its adaptability to various host-associated habitats. Optimal growth for ECSC065 occurs at 37.0°C, a temperature that aligns with the physiological conditions of warm-blooded hosts, suggesting its potential association with mammalian microbiomes.↵↵As a member of the Escherichia genus, ECSC065 shares common characteristics with other E. coli strains, including its versatile metabolic capabilities and significance in microbial ecosystems. Its host-associated habitat implies a role in symbiotic relationships within the gastrointestinal tract of its hosts, potentially contributing to nutrient absorption and gut health. ↵↵The facultative anaerobic nature of ECSC065 may also enable it to colonize a range of niches within the host, adapting to varying oxygen levels that can occur in different segments of the gastrointestinal tract. This adaptability underscores the strain's ecological importance and potential role in maintaining the balance of microbial communities in host-associated environments. Understanding the specific interactions and functions of ECSC065 within its host could provide insights into the broader ecological roles of E. coli strains in microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFJD00000000.1 Bac0011091 Escherichia coli HH-P019 "Escherichia coli HH-P019 is a Gram-negative, rod-shaped bacterium characterized by its arrangement in pairs and singles. This strain thrives optimally at a temperature of 37.0°C, aligning with the typical body temperature of warm-blooded hosts, which suggests its adaptation to a host-associated habitat. E. coli HH-P019 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may enhance its versatility in various microenvironments within the host.↵↵The facultative anaerobic nature of E. coli HH-P019 allows it to exploit diverse metabolic pathways, enabling survival in fluctuating conditions of oxygen availability within the host. This adaptability may facilitate its role in the gastrointestinal microbiota, where it can contribute to nutrient metabolism and influence host health. The association with a host suggests potential interactions with the host immune system, although the specific implications of these interactions remain to be explored. Overall, E. coli HH-P019 exemplifies the evolutionary adaptations of enteric bacteria to thrive within host environments, highlighting the complex relationships between microbial inhabitants and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFKR00000000.1 Bac0011092 Escherichia coli KK-NP011 "Escherichia coli KK-NP011 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The optimal growth temperature for E. coli KK-NP011 is 37.0 °C, aligning with the typical thermal preference of many enteric bacteria and suggesting its adaptation to host-associated habitats, such as the gastrointestinal tract of warm-blooded animals.↵↵The Gram-negative nature of E. coli KK-NP011 is significant, as it features a double membrane structure that includes an outer membrane containing lipopolysaccharides, which can play a role in its interactions with host organisms. The presence of this structural feature may influence its survival strategies and metabolic flexibility in fluctuating environmental conditions.↵↵Given its facultative anaerobic capability, E. coli KK-NP011 can adapt to varying oxygen levels, which is particularly advantageous in host-associated environments where oxygen concentration may differ across niches. This adaptability may also provide insights into its potential roles in microbial communities within the host, including nutrient cycling and maintaining gut homeostasis. Understanding the traits of E. coli KK-NP011 can contribute to broader studies on microbial interactions in host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFWC00000000.1 Bac0011093 Escherichia coli KK-P036 "Escherichia coli KK-P036 is a Gram-negative, rod-shaped bacterium characterized by its occurrence in pairs or as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which may contribute to its versatility in various host-associated habitats. E. coli KK-P036 exhibits optimal growth at a temperature of 37.0°C, aligning with the typical physiological temperature of many mammalian hosts where it is likely to be found.↵↵The habitat of E. coli KK-P036 as host-associated suggests a potential role in the microbiota of its host organisms, where it may participate in nutrient metabolism and contribute to the overall health of the host environment. The adaptability of this strain to fluctuating oxygen levels may also facilitate its survival and function within different niches of the host's microbiome. ↵↵Understanding the characteristics of E. coli KK-P036 enhances our knowledge of the ecological roles of E. coli strains in host-associated environments, and this strain may serve as a model for studying the complex interactions between host organisms and their microbial inhabitants." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFXJ00000000.1 Bac0011094 Escherichia coli KS-NP073 "Escherichia coli KS-NP073 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. ↵↵E. coli, including the KS-NP073 strain, is well-known for its versatility and presence in the intestines of warm-blooded organisms, where it plays a critical role in digestion and nutrient absorption. The capacity to grow in a variety of oxygen conditions suggests that KS-NP073 may engage in complex interactions with its host microbiome, potentially influencing gut health and microbial diversity. ↵↵Moreover, the arrangement of cells in pairs or as singles may reflect its adaptability and survival strategies within different niches of the host environment. Further investigation into the specific interactions of KS-NP073 with its host could provide insights into its ecological roles and contributions to the microbiome. Understanding such traits may also shed light on the broader implications of this strain within the context of microbial ecology and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFZB00000000.1 Bac0011095 Escherichia coli KS-NP081 "Escherichia coli KS-NP081 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli KS-NP081 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, allowing it to adapt to various conditions within its host.↵↵The bacterium's Gram-negative cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane, contributes to its resilience and ability to interact with the host's immune system. The adaptation to a host-associated habitat suggests that E. coli KS-NP081 may play significant roles in the microbial community dynamics within its ecological niche.↵↵Furthermore, its capacity to thrive in diverse oxygen availability conditions indicates a potential for metabolic interactions with other microorganisms in the host environment. This capability is crucial for maintaining a balanced microbiome, as it may influence nutrient cycling and host health. The presence of E. coli KS-NP081 in host-associated environments underscores the importance of understanding such strains in the context of microbial ecology and their potential contributions to the overall homeostasis of the host's microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFZE00000000.1 Bac0011096 Escherichia coli KS-NP120 "Escherichia coli KS-NP120 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli KS-NP120 demonstrates optimal growth at 37.0°C, which corresponds to the average body temperature of many warm-blooded hosts, suggesting an adaptation to host-associated habitats.↵↵The facultative anaerobic nature of E. coli KS-NP120 allows it to efficiently metabolize nutrients in a variety of conditions, giving it a competitive advantage in diverse environments. The strain's association with hosts may reflect its ecological role in the gut microbiota, where it can contribute to the fermentation of carbohydrates and the synthesis of essential vitamins.↵↵Considering its habitat and metabolic versatility, E. coli KS-NP120 may play a significant role in host health by participating in nutrient cycling and maintaining intestinal homeostasis. This could highlight the importance of understanding specific strains within the E. coli group, as their distinct traits may influence their ecological functions and interactions within the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFZM00000000.1 Bac0011097 Escherichia coli KS-P011 "Escherichia coli KS-P011 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. E. coli KS-P011 is classified as a facultative anaerobe, allowing it to adapt to varying oxygen levels within its environment, particularly in the gastrointestinal tracts of warm-blooded organisms.↵↵The Gram-negative classification indicates that E. coli KS-P011 possesses a characteristic outer membrane, which contributes to its resilience against certain environmental stresses and influences its interaction with host immune systems. The rod shape of this microbe is common among enteric bacteria, providing it with a functional morphology that may facilitate motility and colonization within its host.↵↵As a host-associated organism, E. coli KS-P011 likely plays a role in the complex microbial communities found in the intestines, which are essential for nutrient absorption and digestion. This strain exemplifies the adaptability of E. coli species to various ecological niches, highlighting their significance in both health and disease contexts. Given its facultative anaerobic nature, E. coli KS-P011 may also provide insights into metabolic versatility, as it can switch between aerobic and anaerobic respiration depending on the availability of oxygen, potentially influencing its ecological role in gut microbiota dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BFZV00000000.1 Bac0011098 Escherichia coli KS-P018 "Escherichia coli KS-P018 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts. E. coli KS-P018 is categorized as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, thus enhancing its versatility in various environments.↵↵The habitat of E. coli KS-P018 is primarily host-associated, suggesting a close relationship with its host organisms, which could include mammals. This association may play a crucial role in its survival and propagation, as host environments often provide essential nutrients and favorable conditions for growth. ↵↵Understanding the traits of E. coli KS-P018 may offer insights into its potential roles within the microbiota of its host. The strain's adaptability to different oxygen levels implies a capacity to thrive in diverse niches, potentially impacting metabolic processes and interactions within the microbial community. This adaptability also raises interesting questions regarding its ecological dynamics, particularly concerning how it may influence or be influenced by host health and microbial interactions in its native environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGAC00000000.1 Bac0011099 Escherichia coli KS-P024 "Escherichia coli KS-P024 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is indicative of its adaptability in various ecological niches. E. coli KS-P024 has an optimal growth temperature of 37.0°C, aligning with the physiological temperature of many warm-blooded hosts, suggesting a specialization for host-associated environments.↵↵The host-associated habitat of E. coli KS-P024 implies a potential relationship with its host organism, although specific interactions or symbiotic roles are not detailed in the available data. The ability to grow in pairs or as individual cells may facilitate its colonization and persistence within the gastrointestinal tract of hosts, where it can effectively utilize the nutrient-rich environment.↵↵This strain's facultative anaerobic metabolism allows it to adapt to fluctuating oxygen levels, which is a significant advantage in the dynamic conditions present within host environments. Understanding the traits of E. coli KS-P024 may provide insights into its ecological role and functional significance within the microbiome of its host, highlighting the complex interplay between microbial physiology and host health. Further exploration of its characteristics could potentially illuminate its contributions to nutrient cycling and microbial community dynamics in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGAI00000000.1 Bac0011100 Escherichia coli KS-P036 "Escherichia coli KS-P036 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, highlighting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli KS-P036 can grow in both the presence and absence of oxygen, providing it with metabolic flexibility that is advantageous in diverse environments within a host.↵↵E. coli is known for its significant role in the gastrointestinal tract of many organisms, where it contributes to various physiological processes. The ability of KS-P036 to exist in pairs and as single cells may facilitate its interactions within host niches, allowing for efficient colonization and resource utilization. This adaptability not only reflects the ecological versatility of the strain but may also imply its potential involvement in specific symbiotic or competitive relationships within the host microbiome. Understanding the traits of E. coli KS-P036 can provide insights into its ecological role and the dynamics of microbial communities in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGAP00000000.1 Bac0011101 Escherichia coli KS-P045 "Escherichia coli KS-P045 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli KS-P045 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which enhances its metabolic versatility in diverse environments within a host.↵↵As a member of the Enterobacteriaceae family, this strain shares common characteristics with other E. coli strains, particularly its metabolic capabilities that allow it to utilize a range of substrates for energy. The facultative anaerobic nature of E. coli KS-P045 may also contribute to its success in colonizing various niches within the gastrointestinal tract of hosts, where oxygen levels can vary significantly.↵↵Understanding the ecological role of E. coli KS-P045 within its host could provide insights into microbial interactions and the maintenance of gut homeostasis. The ability of this strain to thrive in varying oxygen levels may play a crucial role in its interactions with both the host's immune system and other microbial populations, potentially influencing overall gut health and stability. Further exploration of E. coli KS-P045’s metabolic pathways and interactions could reveal important aspects of host-microbe dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGAV00000000.1 Bac0011102 Escherichia coli KS-P054 "Escherichia coli KS-P054 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is characteristic of many members of the genus Escherichia. E. coli KS-P054 is optimally adapted to growth at 37.0°C, a temperature that corresponds to the physiological conditions of its host-associated habitat. ↵↵As a member of a well-studied genus, E. coli KS-P054 is likely to play a significant role in the microbiota of its host, contributing to various biological processes. The facultative anaerobic metabolism of this strain may facilitate its survival and functionality in diverse environments within the host organism. Understanding the specific ecological roles of E. coli KS-P054 could provide insights into its interactions within the microbiome, including nutrient cycling or modulation of host immune responses. ↵↵This adaptability and association with host environments underscore the importance of E. coli in microbial ecology, particularly in terms of its potential contributions to the health and homeostasis of its host system. Further research may elucidate the precise functions and dynamics of E. coli KS-P054 within its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGAZ00000000.1 Bac0011103 Escherichia coli KS-P058 "Escherichia coli KS-P058 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions found in the mammalian host environment. As a facultative anaerobe, E. coli KS-P058 possesses the metabolic versatility to grow in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within its habitat.↵↵The habitat of E. coli KS-P058 is predominantly host-associated, indicating its close relationship with host organisms, where it may play a role in various biological processes. While the specific ecological roles and interactions of this strain remain to be fully elucidated, its capacity to inhabit the gastrointestinal tract of mammals suggests potential implications for nutrient cycling and host metabolism.↵↵Additionally, the adaptability of E. coli KS-P058 to different oxygen environments may contribute to its survival in diverse niches within the host, potentially influencing microbial community dynamics. Such adaptability, combined with its rod-shaped morphology and specific growth temperature, highlights the ecological significance of this strain in understanding host-microbe interactions. Further research into E. coli KS-P058 may reveal insights into its functional roles within the microbiome and its impact on host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGBC00000000.1 Bac0011104 Escherichia coli KS-P081 "Escherichia coli KS-P081 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average human body temperature, suggesting a potential association with warm-blooded hosts. As a facultative anaerobe, E. coli KS-P081 can grow in both aerobic and anaerobic environments, providing it with metabolic flexibility that enhances its survival in diverse habitats.↵↵The designation ""host-associated"" indicates that this strain is likely to inhabit specific environments within a host organism, possibly contributing to the complex microbial communities found in the gastrointestinal tract. Such association hints at potential interactions with the host's immune system and microbiome, although the specific roles or impacts of E. coli KS-P081 within these contexts remain to be elucidated.↵↵Furthermore, the ability of this strain to exist in pairs or as solitary cells may reflect its adaptive strategies for colonization and nutrient acquisition within its host environment. This trait could facilitate effective communication and nutrient exchange among microbial populations, underscoring the importance of E. coli KS-P081 in the broader microbial dynamics of host-associated ecosystems. Understanding the characteristics of E. coli KS-P081 may provide insights into its functional roles in microbial communities and its interactions with host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGBO00000000.1 Bac0011105 Escherichia coli NS-NP006 "Escherichia coli NS-NP006 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting a close association with warm-blooded organisms. As a facultative anaerobe, E. coli NS-NP006 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to adapt to varying oxygen levels within its host environment.↵↵The habitat of E. coli NS-NP006 is primarily host-associated, indicating a likely symbiotic or commensal relationship with mammalian hosts, where it may play a role in gut microbiota composition and function. This relationship can be crucial for nutrient absorption and maintaining a balanced microbial ecosystem within the gastrointestinal tract.↵↵The ability of E. coli NS-NP006 to thrive in diverse oxygen conditions and its optimal growth temperature suggest that it may be well-suited for survival in the dynamic environments of its host, where fluctuations in local oxygen availability and temperature can occur. Such adaptability may provide insights into the evolutionary strategies utilized by microbial communities in host-associated environments, highlighting the importance of metabolic flexibility in maintaining microbial diversity and stability within the gut microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGBY00000000.1 Bac0011106 Escherichia coli NS-NP023 "Escherichia coli NS-NP023 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or as single cells. This strain is classified as a facultative anaerobe, enabling it to thrive in both aerobic and anaerobic environments. E. coli NS-NP023 exhibits optimal growth at 37.0°C, a temperature that aligns with the physiological conditions found within many host organisms.↵↵The habitat of E. coli NS-NP023 is primarily associated with hosts, indicating its potential role in the microbiota of various organisms. While the specific ecological functions or interactions of this strain within its host are not detailed, it is reasonable to infer that, like other E. coli strains, it may contribute to the maintenance of gut homeostasis or nutrient metabolism, depending on the host's physiological context. ↵↵Given the facultative anaerobic nature of this bacterium, E. coli NS-NP023 may possess metabolic flexibility, allowing it to adapt to varying oxygen levels within the host environment. This adaptability could be crucial for its survival and persistence in diverse microbiological niches, potentially influencing microbial community dynamics. Further investigation into its specific interactions and contributions within the host-associated habitat may yield insights into its ecological significance and functional roles in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGCO00000000.1 Bac0011107 Escherichia coli NS-NP027 "Escherichia coli NS-NP027 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which aligns closely with the body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli NS-NP027 can grow in both the presence and absence of oxygen, providing it with metabolic flexibility to colonize various environments within its host. ↵↵The ability to thrive in dynamic oxygen conditions may facilitate its survival in diverse niches within the host, including the gastrointestinal tract, where fluctuations in oxygen levels can occur. This metabolic versatility is a hallmark of many Enterobacteriaceae, contributing to their ecological success. Understanding the specific characteristics of E. coli NS-NP027 may offer insights into its role within host-associated microbiomes, potentially influencing the overall health of the host organism. Further research could elucidate the specific interactions and contributions of this strain to host metabolism and immune responses, enhancing our comprehension of its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGCS00000000.1 Bac0011108 Escherichia coli NS-NP036 "Escherichia coli NS-NP036 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli NS-NP036 has an optimal growth temperature of 37.0°C, aligning with the physiological temperature of many mammalian hosts, suggesting an adaptation to a host-associated habitat.↵↵The host-associated nature of E. coli NS-NP036 implies that it may be part of the normal microbiota in specific organisms, potentially playing a role in nutrient absorption or metabolic processes within its host. The facultative anaerobic metabolism allows this strain to efficiently utilize available oxygen or switch to fermentation pathways when oxygen is scarce, showcasing its versatility in fluctuating environmental conditions. ↵↵Understanding the characteristics of E. coli NS-NP036 can provide insights into its potential contributions to host health and its interactions within the microbiome. The adaptability of this strain to different oxygen levels may also inform studies on microbial resilience and competition in various habitats, highlighting the importance of metabolic flexibility in microbial survival strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGDB00000000.1 Bac0011109 Escherichia coli NS-P045 "Escherichia coli NS-P045 is a Gram-negative rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting a close association with host environments. E. coli NS-P045 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that enhances its adaptability to various microenvironments within host organisms.↵↵The habitat of E. coli NS-P045 is primarily host-associated, which implies that it may play a role in the microbiome of its host. While the specific interactions and functions of this strain within the host ecosystem are not detailed, its presence in a host-associated environment suggests potential involvement in nutrient cycling or maintaining gut homeostasis. The capacity to grow under varying oxygen conditions further indicates that E. coli NS-P045 may occupy specific niches within the host where oxygen levels fluctuate.↵↵In summary, the physiological traits of Escherichia coli NS-P045 not only highlight its adaptability but also suggest a potentially significant role in the microbial ecology of its host, contributing to the overall health and microbiological balance within that environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGEE00000000.1 Bac0011110 Escherichia coli NS-P072 "Escherichia coli NS-P072 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells and is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic conditions. This strain exhibits optimal growth at 37.0 degrees Celsius, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat.↵↵As a member of the diverse Escherichia coli species, NS-P072's association with hosts may reflect its potential role in various biological interactions within the microbiome or in host physiology. The facultative anaerobic metabolism allows this strain to occupy niches where oxygen availability fluctuates, further enhancing its ecological versatility. ↵↵The capacity to grow in pairs or singles may also influence its ecological interactions, such as biofilm formation or competition with other microbes in the host environment. Understanding the specific roles of E. coli NS-P072 in its host-associated habitat could provide insights into its contributions to microbial community dynamics and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGER00000000.1 Bac0011111 Escherichia coli NS-P078 "Escherichia coli NS-P078 is a Gram-negative, rod-shaped bacterium that typically occurs in singles and pairs. This strain thrives optimally at a temperature of 37.0°C, reflecting its adaptation to host-associated environments, such as the intestinal tract of warm-blooded organisms. E. coli NS-P078 is classified as a facultative anaerobe, indicating that it can grow in both the presence and absence of oxygen, which enhances its versatility in various ecological niches within its host.↵↵The ability of E. coli NS-P078 to thrive in host-associated habitats suggests a symbiotic relationship with its environment, potentially contributing to processes such as nutrient absorption and gut health. Furthermore, its facultative anaerobic nature may play a significant role in its survival and metabolic flexibility, allowing for colonization in diverse conditions found within the gastrointestinal tract. Understanding the unique characteristics of E. coli NS-P078 could provide insights into its role within the microbiome, as well as its potential contributions to the overall health of its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGEU00000000.1 Bac0011112 Escherichia coli SI-NP022 "Escherichia coli SI-NP022 is a Gram-negative, rod-shaped bacterium that typically occurs in single or paired arrangements. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli SI-NP022 has an optimal growth temperature of 37.0°C, a condition that aligns with the physiological temperature of many mammalian hosts, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli is commonly found in the intestines of warm-blooded organisms, where it plays a role in the gut microbiome. The facultative anaerobic nature of this strain allows it to utilize various metabolic pathways to survive in fluctuating oxygen levels, which is advantageous in dynamic host environments. ↵↵Understanding the specific traits of E. coli SI-NP022 contributes to our broader knowledge of microbial diversity in host-associated ecosystems. Given its optimal temperature and oxygen requirements, this strain may play a significant role in nutrient cycling and maintaining homeostasis within the gut microbiome, potentially influencing the health and metabolic processes of its host. Further investigation into its interactions within the host environment could provide insights into its functional contributions to gut health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGHE00000000.1 Bac0011113 Escherichia coli SI-P006 "Escherichia coli SI-P006 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the typical body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli SI-P006 is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments, which enhances its versatility in various ecological niches within the host. ↵↵The specific growth conditions and oxygen requirements of E. coli SI-P006 suggest its potential role in the gut microbiome, where it may contribute to metabolic processes or nutrient cycling. Its ability to inhabit host-associated environments underscores the importance of understanding such strains, as they can significantly influence host health and microbial community dynamics. Given the adaptability of E. coli SI-P006 to different oxygen levels, it may also play a role in the interplay between various microbial populations in the gut, particularly under fluctuating conditions. This adaptability could provide insights into microbial resilience and interactions within complex ecosystems, emphasizing the intricate balance that defines host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGID00000000.1 Bac0011114 Escherichia coli SI-P019 "Escherichia coli SI-P019 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, a condition that aligns with its association with host organisms. E. coli SI-P019 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which may enhance its adaptability to varying ecological niches within host-associated habitats.↵↵As a representative of the Escherichia genus, E. coli SI-P019 shares common characteristics with other strains, particularly in its metabolic versatility and ability to utilize diverse substrates. Its facultative anaerobic nature may provide an advantage in host environments where oxygen levels can fluctuate, allowing it to maintain growth and metabolic activity under different conditions. The rod shape and specific cell arrangements of this strain could influence its interactions with the host's microbiota and immune system.↵↵Further exploration of E. coli SI-P019 may reveal insights into its role in the microbial community dynamics within a host, particularly regarding its potential contributions to nutrient cycling and its interactions with other microbial species. Understanding these interactions may shed light on the broader ecological implications of E. coli strains in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGII00000000.1 Bac0011115 Escherichia coli SI-P044 "Escherichia coli SI-P044 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singly. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both the presence and absence of oxygen. Escherichia coli SI-P044 has an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat, suggesting a close adaptation to its living environment.↵↵The host-associated lifestyle of this strain implies a potential role in various biological processes within its host, such as nutrient metabolism or modulation of the host's microbiome. Additionally, the ability to exist as single cells or in pairs may influence its interactions with the host's immune system and other microbial inhabitants, contributing to its ecological niche. Understanding the specific dynamics of E. coli SI-P044 in its host environment could provide insights into its functional roles and interactions within complex biological systems, highlighting the intricate relationships between microorganisms and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BGIS00000000.1 Bac0011116 Pseudomonas syringae pv. actinidiae MAFF212206 "Pseudomonas syringae pv. actinidiae MAFF212206 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is a heterotrophic organism, meaning it derives its energy from organic compounds, and it requires oxygen for growth, classifying it as an aerobe. ↵↵Pseudomonas syringae pv. actinidiae is known to inhabit a variety of environments, which may include agricultural settings, where it can interact with various plant species. Its adaptability to multiple habitats highlights its ecological versatility, allowing it to occupy niches that support its growth and survival.↵↵Interestingly, the presence of this bacterium in diverse environments may be indicative of its ecological role in nutrient cycling, particularly in the decomposition of organic matter. This trait suggests that Pseudomonas syringae pv. actinidiae MAFF212206 could be an important player in the microbial communities of its habitats, contributing to soil health and plant interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 BGJZ00000000.1 Bac0011117 Pseudomonas syringae pv. actinidiae MAFF212211 "Pseudomonas syringae pv. actinidiae MAFF212211 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, meaning it derives its energy from organic compounds, which allows it to thrive in diverse habitats. As an aerobic microbe, Pseudomonas syringae pv. actinidiae MAFF212211 requires oxygen for its metabolic processes, positioning it within environments that support aerobic life.↵↵The ecological versatility of this strain is noteworthy, as it can adapt to various habitats, which may range from soil to plant surfaces. Such adaptability likely contributes to its interactions within complex microbial communities, potentially influencing local biogeochemical cycles. The ability to occupy multiple habitats suggests that Pseudomonas syringae pv. actinidiae MAFF212211 may play significant roles in nutrient cycling and plant-microbe interactions, which underscores the importance of studying this strain to understand its ecological implications in diverse environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 BGKA00000000.1 Bac0011118 Burkholderia vietnamiensis RS1 "Burkholderia vietnamiensis RS1 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This microbe has been isolated from a variety of habitats, indicating its versatility and potential adaptability to diverse ecological niches. The ability to function in varying oxygen levels suggests that B. vietnamiensis RS1 may play a significant role in biogeochemical cycles, particularly in environments where oxygen availability fluctuates.↵↵The genetic and metabolic versatility of B. vietnamiensis RS1 aligns with its known adaptations to multiple habitats, which could include soil, water, and plant-associated environments. Its facultative aerobic nature may confer advantages in competing with other microorganisms under conditions of limited oxygen, positioning it as a potential player in microbial community dynamics. ↵↵This adaptability highlights the significance of B. vietnamiensis RS1 in ecological studies, particularly in understanding how microorganisms can respond to environmental stressors and changes. Further research into the specific ecological roles of B. vietnamiensis RS1 could provide insights into its contributions to ecosystem functioning and stability, as well as its interactions within complex microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis Negative Rod Yes 2 Facultative aerobe Mesophilic Multiple Free living 60552 BGKC00000000.1 Bac0011119 Nitrosopumilus zosterae NM25 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus zosterae 718286 BGKI00000000.1 Bac0011120 Paenibacillus macerans JCM 17693 "Paenibacillus macerans JCM 17693 is a rod-shaped bacterium classified within the genus Paenibacillus. This organism is notable for its capacity to thrive in diverse environmental conditions, although specific ecological or habitat preferences are not outlined in the available data. As a member of the Paenibacillus genus, it may possess unique metabolic capabilities that contribute to its ecological roles, potentially including nutrient cycling or interactions with other microorganisms.↵↵The rod shape of Paenibacillus macerans JCM 17693 suggests that it may exhibit typical characteristics associated with filamentous growth patterns, which can enhance its adaptability in various environments. This morphology often allows for efficient nutrient absorption and colonization of surfaces, which could be advantageous in competitive ecological niches.↵↵While further details regarding its physiological and biochemical properties are not provided, the genus Paenibacillus is often recognized for its versatility and potential applications in biotechnology, such as in agriculture or industry. Overall, the structural characteristics of Paenibacillus macerans JCM 17693 may imply a role in decomposition processes or soil health, contributing to its importance in microbial communities. Understanding its specific interactions and functions within its ecosystem could yield insights into its potential applications in sustainable practices." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus macerans Rod 44252 BGMM00000000.1 Bac0011121 Vibrio harveyi GAN1709 "Vibrio harveyi GAN1709 is a Gram-negative bacterium primarily found in marine environments, specifically within the aquaculture settings of the Changjiang estuary. This organism is part of the Vibrio genus, which is well-known for its role in marine ecosystems and aquaculture practices. The presence of V. harveyi GAN1709 in such habitats suggests its potential involvement in the microbial communities that support fish health and aquaculture productivity. ↵↵Gram-negative bacteria like V. harveyi typically possess a thin peptidoglycan layer and an outer membrane, characteristics that may confer certain advantages in resistance to environmental stresses commonly found in estuarine environments. The isolation of this strain from aquaculture indicates that it may have adaptations that allow it to thrive in nutrient-rich waters, possibly influencing local microbial dynamics. ↵↵Further research into V. harveyi GAN1709 could provide insights into its roles within the estuarine ecosystem, particularly in nutrient cycling and interactions with other microbial populations. Its presence in aquaculture highlights the importance of understanding such microorganisms for sustainable practices in marine farming." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi negative aquaculture; Changjiang estuary; Marine 669 BGNF00000000.1 Bac0011122 Nitrospirota bacterium BD2 Pseudomonadati Nitrospirota Nitrospirota bacterium 2026887 BGOT00000000.1 Bac0011123 Mesosutterella multiformis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Mesosutterella Mesosutterella multiformis 2259133 BGZJ00000000.1 Bac0011124 Ralstonia sp. SET104 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. SET104 2448774 BHVX00000000.1 Bac0011125 Bacteroides faecalis KCTC 15687 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides faecalis 2447885 BHWB00000000.1 Bac0011126 Rhodococcus erythropolis JCM 3201 "Rhodococcus erythropolis JCM 3201 is a Gram-positive, filamentous bacterium characterized by its rod shape and aerobic metabolic requirements. This microbe thrives in various habitats, suggesting a versatile ecological adaptability. The optimal growth temperature for R. erythropolis JCM 3201 is approximately 20.0°C, indicating a preference for moderate environmental conditions.↵↵As a member of the genus Rhodococcus, this organism demonstrates notable biochemical capabilities, including the potential for biodegradation of complex organic compounds. The filamentous growth form may facilitate nutrient acquisition and colonization in diverse environments, reflecting the organism's ecological versatility. ↵↵Considering its aerobic nature, R. erythropolis JCM 3201 plays a significant role in carbon cycling, especially in environments where organic matter is abundant. This trait positions the microbe as a potential candidate for bioremediation applications, particularly in the breakdown of pollutants in soil and water environments. Overall, the adaptability and metabolic versatility of R. erythropolis JCM 3201 underscore its importance in microbial ecology and environmental biotechnology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 1833 BHXB00000000.1 Bac0011127 Clostridium tagluense A121 "Clostridium tagluense A121 is a Gram-positive, rod-shaped bacterium known for its anaerobic metabolism and spore-forming capabilities. This microbe thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler environments. As a member of the Clostridia class, C. tagluense A121 is likely to inhabit anaerobic niches, where it can form spores as a survival strategy under unfavorable conditions. ↵↵The ability to form spores is a significant trait that allows this organism to endure extreme environmental stresses, thereby contributing to its persistence in various habitats. The combination of its anaerobic growth requirement and optimal temperature preference indicates that C. tagluense A121 may be well adapted to environments such as deep-sea sediments or other low-temperature, oxygen-depleted ecosystems.↵↵Understanding the specific ecological roles of C. tagluense A121 may provide insights into its potential contributions to nutrient cycling in its native habitats, particularly in relation to organic matter decomposition under anaerobic conditions. Further research could elucidate its interactions with other microorganisms and its overall impact on microbial community dynamics in these specialized environments." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium tagluense Gram-positive rod anaerobic 16 psychrotolerant spore-forming 360422 BHYK00000000.1 Bac0011128 Cellulomonas algicola TKZ-21 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas algicola 2071633 BHYL00000000.1 Bac0011129 Rhodococcus wratislaviensis C31-06 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus wratislaviensis 44752 BHYM00000000.1 Bac0011130 Thermaurantimonas aggregans LA Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Schleiferiaceae Thermaurantimonas Thermaurantimonas aggregans 2173829 BHZE00000000.1 Bac0011131 Parageobacillus thermoglucosidasius TG4 "Parageobacillus thermoglucosidasius TG4 is a Gram-positive, rod-shaped bacterium notable for its thermophilic properties. This microbe is characterized by its ability to thrive at elevated temperatures, making it particularly relevant in industrial applications where heat stability is essential. The rod shape of P. thermoglucosidasius TG4 is a common morphological characteristic among many members of the Bacillus genus, which aids in its classification within the broader context of microbial diversity.↵↵While specific metabolic capabilities and ecological interactions of P. thermoglucosidasius TG4 remain to be fully elucidated, its thermophilic nature suggests a potential role in biotechnological processes, such as biofuel production and biomass degradation, particularly in environments that experience high temperatures. The unique combination of its Gram-positive cell wall structure and rod morphology may also contribute to its resilience and adaptability in extreme conditions.↵↵Given its thermal adaptability, P. thermoglucosidasius TG4 exemplifies how certain microbial species have evolved mechanisms to exploit high-temperature niches, which could inform future research on microbial ecology and the development of heat-resistant biocatalysts. Further exploration of its metabolic pathways and interactions within thermophilic communities could provide insights into its ecological role and potential applications in biotechnology." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus thermoglucosidasius positive Rod thermophilic 1426 BHZK00000000.1 Bac0011132 Escherichia coli 03-A75-A "Escherichia coli 03-A75-A is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting a close association with host environments. E. coli 03-A75-A is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that enhances its adaptability in various microenvironments within host organisms.↵↵Being host-associated, E. coli 03-A75-A likely occupies niches within the gastrointestinal tract or other body sites, contributing to the complex microbial communities that inhabit these regions. Its facultative anaerobic nature may allow it to exploit different metabolic pathways depending on the local oxygen availability, which can fluctuate in host tissues.↵↵The ability of E. coli 03-A75-A to thrive in a host-associated habitat underscores its potential role in the intricate interactions between microbial communities and their hosts. This adaptability not only supports the bacterium's survival but may also play a part in the broader ecological dynamics of the gut microbiome, influencing nutrient cycling and the maintenance of host health. Understanding such strains can provide insights into their functional roles within microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BIBG00000000.1 Bac0011133 Escherichia coli 38-H15-A "Escherichia coli 38-H15-A is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells, showcasing its distinctive morphology. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host-associated habitat. E. coli 38-H15-A exhibits facultative anaerobic metabolism, allowing it to adapt to both aerobic and anaerobic environments, which is a hallmark feature of many E. coli strains.↵↵The association of E. coli 38-H15-A with host environments suggests it may play a role in the complex microbial ecosystems within the gastrointestinal tract of mammals. Its ability to thrive under varying oxygen conditions may contribute to its versatility in nutrient utilization and interaction with host cells. Given these traits, E. coli 38-H15-A may serve as a model for understanding the functional dynamics of gut microbiota, particularly in relation to nutrient metabolism and host-microbe interactions. Further investigation into this strain could provide insights into the ecological roles of E. coli within its native habitat and its potential contributions to host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BICV00000000.1 Bac0011134 Escherichia coli 70-J76-A "Escherichia coli 70-J76-A is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0 degrees Celsius, which aligns with the body temperature of many warm-blooded hosts, indicating a close association with host organisms. E. coli 70-J76-A is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments, a trait that enhances its adaptability within the diverse microenvironments found in host-associated habitats.↵↵The facultative anaerobic nature of E. coli 70-J76-A suggests that it can exploit a range of metabolic pathways depending on the availability of oxygen, which may provide an advantage in fluctuating conditions within the host. This versatility in energy production may facilitate its survival in various niches, such as the gastrointestinal tract, where oxygen levels can vary significantly. The ability to thrive under these conditions may also play a role in interspecies competition and microbial community dynamics within the host environment.↵↵Overall, E. coli 70-J76-A exemplifies the ecological adaptability of enteric bacteria, demonstrating how specific traits, such as optimal growth temperature and metabolic flexibility, can influence their survival and interactions within host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BIEA00000000.1 Bac0011135 Escherichia coli 82-F63-A "Escherichia coli 82-F63-A is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement of pairs and singles. This strain thrives optimally at 37.0°C, which aligns with the typical body temperature of many mammalian hosts. E. coli 82-F63-A is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, a trait that enhances its adaptability within host-associated habitats.↵↵The association of E. coli 82-F63-A with host organisms suggests a potentially complex interplay with the host's microbiome and immune system. As a member of the Enterobacteriaceae family, this strain may participate in various metabolic processes that can influence nutrient availability and microbial dynamics within the host. Furthermore, its facultative anaerobic nature implies that E. coli 82-F63-A can thrive in diverse environments within the host, where oxygen levels may fluctuate.↵↵The adaptability of E. coli 82-F63-A to host-associated environments could provide insights into the microbial ecology of the gastrointestinal tract, where it may play a role in digestion and the maintenance of gut health. Understanding this strain's specific interactions within its ecological niche may reveal important aspects of microbial symbiosis and host-microbe relationships, contributing to broader knowledge of host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 BIEM00000000.1 Bac0011136 Dictyobacter aurantiacus S-27 "Dictyobacter aurantiacus S-27 is a Gram-positive, spore-forming bacterium that thrives in aerobic conditions, utilizing a heterotrophic lifestyle for energy acquisition. This microbe exhibits optimal growth at a temperature of 29.0°C, suggesting its adaptation to moderately warm environments. The Gram-positive nature of D. aurantiacus S-27 indicates a thick peptidoglycan layer in its cell wall, a characteristic that may confer resilience and stability under varying environmental stresses.↵↵As a spore-forming organism, D. aurantiacus S-27 possesses the capability to produce spores, which serve as a survival mechanism under unfavorable conditions. This trait is particularly significant in microbiological contexts, as it allows for persistence in diverse habitats, potentially contributing to the organism’s ecological versatility. The heterotrophic energy acquisition further implies that D. aurantiacus S-27 relies on organic compounds for growth, positioning it as a participant in nutrient cycling within its ecosystem.↵↵The combination of these traits suggests that D. aurantiacus S-27 may play a role in decomposing organic matter, thus influencing soil health and nutrient availability. Its aerobic nature indicates a preference for oxygen-rich environments, which may also reflect its potential interactions with other microorganisms in the soil microbiome. Overall, the ecological implications of D. aurantiacus S-27 highlight its potential importance in biogeochemical cycles, particularly in contexts where organic matter degradation is essential." Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Dictyobacteraceae Dictyobacter Dictyobacter aurantiacus Gram-positive aerobic 29 heterotroph mesophilic spore-forming 1936993 BIFQ00000000.1 Bac0011137 Dictyobacter kobayashii Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Dictyobacteraceae Dictyobacter Dictyobacter kobayashii 2014872 BIFS00000000.1 Bac0011138 Cellulomonas biazotea NBRC12680 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas biazotea aerobic 29 mesophilic 1709 BIMR00000000.1 Bac0011139 Veillonella tobetsuensis PAGU 1579 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella tobetsuensis 1110546 BJCR00000000.1 Bac0011140 Gandjariella thermophila SL3-2-4 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Gandjariella Gandjariella thermophila 1931992 BJFL00000000.1 Bac0011141 Streptomyces antimycoticus NBRC 12839 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces antimycoticus 29 mesophilic spore-forming 68175 BJHV00000000.1 Bac0011142 Streptomyces avermitilis ATCC 31267 "Streptomyces avermitilis ATCC 31267 is a Gram-positive, tailed bacterium that exhibits sporulation and thrives as an aerobic organism. This species is known for its ability to inhabit a variety of environments, making it a versatile member of the Streptomyces genus. The optimal growth temperature for S. avermitilis is approximately 25.0°C, indicating a preference for moderate thermal conditions conducive to its metabolic activities.↵↵The tailed morphology of S. avermitilis is characteristic of many actinobacteria, which often exhibit filamentous structures and complex life cycles involving sporulation. This capacity for sporulation is significant, as it enables the organism to withstand unfavorable environmental conditions, thereby facilitating its survival and proliferation in diverse habitats.↵↵Understanding the ecological role of S. avermitilis may provide insights into its contributions to soil microbiomes, particularly in nutrient cycling and organic matter decomposition. The organism's ability to produce secondary metabolites, including avermectin, highlights its potential significance in biocontrol and agricultural applications, although specific interactions within its habitat remain areas for further investigation. This versatility and adaptability underscore the ecological importance of S. avermitilis within its various environments." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces avermitilis Positive Tailed Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Sporulating 33903 BJHY00000000.1 Bac0011143 Candidatus Kentron sp. G Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Kentrum Candidatus Kentrum sp. G 2126341 CAADHE000000000.1 Bac0011144 Klebsiella variicola strain 5012STDY7312721 "Klebsiella variicola strain 5012STDY7312721 is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This strain does not undergo sporulation and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is 37.0°C, which aligns with the physiological temperature of many host organisms.↵↵As a host-associated microbe, K. variicola strain 5012STDY7312721 is likely to inhabit niches influenced by its association with living organisms, potentially contributing to diverse ecological interactions. The facultative anaerobic metabolism suggests that this strain can adapt to fluctuating oxygen levels within its host environment, possibly enabling it to exploit a range of microhabitats. This adaptability may provide insights into its ecological roles, particularly in environments where oxygen availability varies, such as in the intestines of animals or in plant-associated microbiomes. Further studies could elucidate the specific interactions and functions of K. variicola strain 5012STDY7312721 within its host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella variicola Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 244366 CAAGTB000000000.1 Bac0011145 Klebsiella pneumoniae strain 5012STDY7312591 "Klebsiella pneumoniae strain 5012STDY7312591 is a nonsporulating, rod-shaped, Gram-negative bacterium that typically occurs in chains, pairs, or as single cells. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which is characteristic of many bacteria associated with host environments. The optimal growth temperature for this strain is 37.0°C, aligning with the body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat where it may thrive.↵↵As a facultative anaerobe, Klebsiella pneumoniae strain 5012STDY7312591 can grow in both aerobic and anaerobic conditions, allowing it to occupy diverse ecological niches within the host. This versatility in oxygen utilization may contribute to its survival in various microenvironments, including those affected by fluctuating oxygen levels. The presence of this strain in host-associated habitats may also indicate its involvement in complex interactions within the microbiome, where it could play a role in nutrient cycling or host metabolism. Understanding the specific ecological roles of strain 5012STDY7312591 could provide insights into its contributions to both health and disease states in the host organism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 CAAGWD000000000.1 Bac0011146 Klebsiella quasipneumoniae strain 5012STDY7312675 "Klebsiella quasipneumoniae strain 5012STDY7312675 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration, allowing it to thrive in varying oxygen environments. This strain is associated primarily with host organisms, which suggests a potential role in the microbiota or as an opportunistic pathogen in specific contexts, although the precise ecological interactions remain to be fully characterized.↵↵As a facultative anaerobe, K. quasipneumoniae can utilize both aerobic and anaerobic metabolic pathways, which may enhance its adaptability to different niches within host-associated environments. This metabolic versatility could facilitate survival in diverse habitats, particularly in the complex microbiomes of various hosts, where it may compete with other microorganisms for resources. ↵↵The ability of this strain to thrive in host-associated environments highlights the importance of understanding the microbial dynamics within these ecosystems, particularly in relation to health and disease. The interactions between K. quasipneumoniae and its host could provide valuable insights into the roles of microbial communities in maintaining homeostasis or contributing to dysbiosis, potentially influencing the host's immune response and overall health. Further investigations into this strain's specific ecological roles and behaviors within its habitat could reveal significant implications for microbiome research and clinical studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae Negative Rod Facultative anaerobe Mesophilic HostAssociated Free living 1463165 CAAGYG000000000.1 Bac0011147 Clostridioides difficile strain 078GUE004 "Clostridioides difficile strain 078GUE004 is a Gram-positive, rod-shaped bacterium that typically exhibits a cellular arrangement in chains, pairs, or as single cells. This strain is classified as a chemoorganotroph, relying on organic compounds as its energy source, and is exclusively anaerobic, thriving in environments devoid of oxygen. The optimal growth temperature for strain 078GUE004 is 37.0°C, aligning with the physiological conditions of its host-associated habitat, where it is commonly found.↵↵As a member of the Clostridia class, C. difficile strains are known for their ability to form spores, although the specific spore-forming capabilities of strain 078GUE004 are not detailed here. The anaerobic lifestyle and specific energy acquisition strategies suggest that this strain plays a significant role in the microbial ecology of the gastrointestinal tract, where it may interact with both host and other microbial communities. ↵↵The association with host organisms indicates that strain 078GUE004 may contribute to the complex dynamics of gut microbiota, potentially influencing nutrient cycling and host health. Understanding the ecological roles and interactions of specific strains, such as strain 078GUE004, is essential for elucidating their contributions to gut homeostasis and the implications of dysbiosis in various health conditions." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Human 1496 CAAJZO000000000.1 Bac0011148 Streptococcus pneumoniae strain GPSC205 "Streptococcus pneumoniae strain GPSC205 is a Gram-positive coccal bacterium that typically arranges itself in chains or pairs. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 30.0°C, which suggests a preference for moderate temperatures that may be found in various ecological niches.↵↵The habitat of S. pneumoniae strain GPSC205 is described as multiple, indicating its capacity to occupy diverse environments, potentially ranging from human-associated locales to broader ecological settings. This versatility may contribute to the strain's ability to adapt to different environmental pressures and nutrient availabilities, a trait that is particularly significant for survival in fluctuating conditions. ↵↵Understanding the physiological characteristics of strain GPSC205 can provide insights into its ecological roles, particularly in relation to its interactions within microbial communities. The ability to form chains and pairs may facilitate adherence to surfaces or enhance communication among cells in biofilms, potentially influencing its ecological dynamics in both host-associated and free-living contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAKSY000000000.1 Bac0011149 Streptococcus pneumoniae strain GPSC413 "Streptococcus pneumoniae strain GPSC413 is a Gram-positive coccus that typically exhibits a characteristic arrangement of cells in chains or pairs. This strain thrives optimally at a temperature of 30.0 °C, indicating its adaptability to a range of environments. As a facultative anaerobe, S. pneumoniae strain GPSC413 can utilize both aerobic and anaerobic metabolic pathways, allowing it to occupy diverse habitats where oxygen levels may fluctuate.↵↵The ability to form chains and pairs is a notable aspect of its morphology, which may influence its interactions within microbial communities and host environments. Streptococcus pneumoniae is well-documented for its role in human health, but the ecological implications of strain GPSC413 in various habitats warrant further exploration. Given its versatility as a facultative anaerobe, this strain may play a role in nutrient cycling and microbial dynamics in environments with varying oxygen availability, potentially contributing to the ecological balance in both natural and human-influenced ecosystems.↵↵Understanding the traits of S. pneumoniae strain GPSC413 could provide insights into its adaptability and survival strategies in diverse habitats, highlighting the importance of environmental conditions in shaping microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAKWD000000000.1 Bac0011150 Streptococcus pneumoniae strain GPSC25 "Streptococcus pneumoniae strain GPSC25 is a Gram-positive cocci bacterium characterized by its arrangement in chains and pairs, exhibiting a facultative anaerobic metabolism. This strain thrives optimally at a temperature of 30.0°C, suggesting an adaptability to a range of environmental conditions. ↵↵S. pneumoniae is known to inhabit diverse environments, which may include both human and non-human hosts, allowing it to occupy multiple ecological niches. This versatility in habitat is crucial for its survival and potential interactions within various microbial communities. The facultative anaerobic nature of GPSC25 indicates that it can grow in the presence or absence of oxygen, enabling it to exploit different metabolic pathways depending on the environmental conditions.↵↵The ability of S. pneumoniae strain GPSC25 to persist in various habitats may contribute to its ecological resilience and adaptability, allowing for survival in fluctuating environments. This trait may also facilitate its role in microbial interactions and competition within its ecosystems, highlighting the importance of understanding such strains in the context of microbial ecology and their potential implications for health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAMMH000000000.1 Bac0011151 Streptococcus pneumoniae strain GPSC62 "Streptococcus pneumoniae strain GPSC62 is a Gram-positive coccus that typically exists in chains or pairs. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen. ↵↵S. pneumoniae is known to inhabit a variety of ecological niches, and the versatility in its habitat may contribute to its survival and adaptability in diverse environments. The arrangement of cells in chains or pairs is characteristic of many streptococcal species and may play a role in its interactions with the host's immune system.↵↵Understanding the traits of strain GPSC62 enhances our comprehension of the ecological dynamics and physiological characteristics of this bacterium. Its ability to thrive in multiple habitats while exhibiting a facultative anaerobic lifestyle suggests a potential for survival in fluctuating environmental conditions. This adaptability may provide insights into its ecological roles and interactions in various ecological settings, particularly in areas where oxygen levels may vary." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAANRG000000000.1 Bac0011152 Streptococcus pneumoniae strain GPSC33 "Streptococcus pneumoniae strain GPSC33 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic characteristics, allowing it to grow in both the presence and absence of oxygen. S. pneumoniae is known to inhabit a variety of environments, which may include diverse ecological niches within human and animal hosts, as well as in external environments. ↵↵The cellular arrangement of S. pneumoniae strain GPSC33, characterized by its cocci shape in chains or pairs, is a distinctive feature of the Streptococcus genus, contributing to its identification in microbiological studies. The ability to grow optimally at a moderate temperature suggests that this strain may be well-adapted to environments such as mucosal surfaces where temperatures typically range around physiological conditions.↵↵Moreover, the facultative anaerobic nature of GPSC33 indicates its metabolic versatility, enabling it to utilize different energy sources depending on the availability of oxygen. This adaptability may play a crucial role in its survival and persistence in various habitats, potentially allowing it to exploit transient ecological opportunities. Further research could elucidate its specific ecological roles and interactions with other microbial communities in its habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAOQE000000000.1 Bac0011153 Streptococcus pneumoniae strain GPSC359 "Streptococcus pneumoniae strain GPSC359 is a Gram-positive, cocci-shaped bacterium that typically arranges itself in chains or pairs. This strain is a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may contribute to its adaptability in various environments. Optimal growth conditions for strain GPSC359 are observed at a temperature of 30.0°C, suggesting a preference for moderate thermal conditions. ↵↵The habitat of S. pneumoniae strain GPSC359 is noted to be diverse, which may reflect the strain's versatility and potential for survival in varied ecological niches. This adaptability could be linked to its metabolic flexibility as a facultative anaerobe, allowing it to exploit different resources in fluctuating environments. ↵↵Given the traits of strain GPSC359, it is plausible to consider its ecological role, particularly in environments where it may engage in interactions with other microbial communities. Such interactions could be significant in nutrient cycling or in influencing the dynamics of microbial populations in its habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAQUH000000000.1 Bac0011154 Streptococcus pneumoniae strain GPSC211 "Streptococcus pneumoniae strain GPSC211 is a Gram-positive coccus that typically forms chains or pairs. This strain thrives optimally at a temperature of 30.0°C, indicating its adaptability to various environments. As a facultative anaerobe, S. pneumoniae strain GPSC211 can grow in both aerobic and anaerobic conditions, which may contribute to its survival and versatility in diverse habitats.↵↵The ability to exist in multiple habitats suggests that strain GPSC211 is well-suited to colonize different niches, potentially including human mucosal surfaces, where it may play a role in normal flora or, under certain conditions, contribute to disease. The chain and pair arrangement of the bacteria may also influence its interactions within these ecological niches, potentially affecting its competitive dynamics with other microbial species.↵↵Overall, the physiological traits of S. pneumoniae strain GPSC211 underscore its ecological adaptability, allowing it to occupy various environments while maintaining metabolic flexibility. This adaptability may provide insights into its resilience and potential interactions within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAASWG000000000.1 Bac0011155 Streptococcus pneumoniae strain GPSC232 "Streptococcus pneumoniae strain GPSC232 is a Gram-positive cocci bacterium that typically exhibits a characteristic arrangement in chains or pairs. This strain thrives optimally at a temperature of 30.0°C and demonstrates facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. The ability to utilize different metabolic pathways depending on the availability of oxygen suggests that GPSC232 can adapt to a variety of habitats, which may include diverse ecological niches where oxygen levels fluctuate.↵↵The ecological versatility of S. pneumoniae strain GPSC232 underscores its potential to inhabit multiple environments, which may range from human-associated microbiomes to various environmental reservoirs. This adaptability might contribute to its role in the dynamics of microbial communities, particularly in environments where temperature and oxygen conditions are variable. Understanding the specific ecological interactions of this strain could provide insights into its resilience and potential influence on microbial diversity in its habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAATAZ000000000.1 Bac0011156 Streptococcus pneumoniae strain GPSC38 "Streptococcus pneumoniae strain GPSC38 is a Gram-positive coccus that typically arranges itself in pairs or chains. This bacterium thrives optimally at 30.0°C and exhibits facultative anaerobic respiration, indicating its ability to grow in both the presence and absence of oxygen. Its habitat is noted to be diverse, suggesting adaptability to various environmental conditions.↵↵The characteristic chaining and pairing of S. pneumoniae strain GPSC38 may be significant for its survival and colonization in different niches, as this arrangement can influence its interaction with host tissues and the immune response. Furthermore, the optimal growth temperature of 30.0°C aligns with conditions found in certain human and animal hosts, which may facilitate its persistence in those environments.↵↵This strain's ecological versatility, combined with its unique morphological features, points to a potential role in microbial communities where it may contribute to both beneficial and detrimental interactions with other microorganisms and hosts. Understanding the specific habitats where GPSC38 thrives could provide insights into its ecological dynamics and implications for microbial health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAVYO000000000.1 Bac0011157 Streptococcus pneumoniae strain GPSC8 "Streptococcus pneumoniae strain GPSC8 is a Gram-positive coccus that typically arranges itself in chains and pairs. This organism thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic respiration, allowing it to grow in both aerobic and anaerobic environments. Its ability to inhabit multiple habitats suggests a versatile adaptability, which is characteristic of many members of the Streptococcus genus.↵↵The chain and pair arrangement of S. pneumoniae GPSC8 may facilitate its interaction with various environments and host tissues, potentially influencing its ecological niche and metabolic activities. Furthermore, the strain's facultative anaerobic nature indicates that it can utilize fermentation pathways in the absence of oxygen, providing a competitive advantage in fluctuating environmental conditions. Understanding these traits can shed light on its survival strategies and ecological roles, which may include interactions with other microbial communities in diverse habitats. ↵↵Overall, the combination of its morphological characteristics and metabolic flexibility suggests that Streptococcus pneumoniae strain GPSC8 occupies a significant ecological position, likely contributing to the microbial dynamics within its environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAWYE000000000.1 Bac0011158 Streptococcus pneumoniae strain GPSC47 "Streptococcus pneumoniae strain GPSC47 is a Gram-positive coccus that commonly exhibits a characteristic arrangement in chains or pairs. This strain thrives optimally at a temperature of 30.0°C, suggesting a preference for moderate environmental conditions. As a facultative anaerobe, S. pneumoniae strain GPSC47 can adapt to both aerobic and anaerobic environments, allowing it to inhabit a diverse range of ecological niches. ↵↵The ability to grow in varied habitats underlines the strain's metabolic versatility, contributing to its potential roles in different microbial communities. While the specific ecological roles of S. pneumoniae strain GPSC47 remain to be fully characterized, its presence in multiple habitats indicates that it may interact with various microorganisms and influence local microbial dynamics. Such interactions could have implications for nutrient cycling and the overall stability of these ecosystems. The adaptability of this strain highlights the importance of further studies to elucidate its ecological significance and potential applications in microbiological research." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAWYT000000000.1 Bac0011159 Streptococcus pneumoniae strain GPSC190 "Streptococcus pneumoniae strain GPSC190 is a Gram-positive coccus that typically forms chains and pairs. This strain is capable of thriving in diverse habitats, indicative of its ecological versatility. As a facultative anaerobe, S. pneumoniae strain GPSC190 is able to grow in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions and host niches. The optimal growth temperature for this strain is approximately 30.0°C, which aligns with its ability to inhabit a range of environments that may provide suitable thermal conditions.↵↵The chain and pair arrangement of the cells is characteristic of the genus Streptococcus and may play a role in its physiological interactions and colonization strategies. Given the adaptability of S. pneumoniae strain GPSC190 to different habitats and oxygen levels, it is plausible that this strain possesses metabolic pathways that enhance its survival in fluctuating conditions. This adaptability may also suggest potential interactions with other microbial communities in its environment, contributing to the ecological dynamics within those habitats. Understanding the specific ecological roles of such strains could provide insights into microbial community structure and function in various ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CAAXHV000000000.1 Bac0011160 Streptococcus pneumoniae strain GPSC13 "Streptococcus pneumoniae strain GPSC13 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen conditions within its habitat. Although specific habitat details for strain GPSC13 are not provided, Streptococcus pneumoniae is known to inhabit diverse environments, often associated with both human and animal hosts.↵↵The ability to grow in multiple habitats suggests that strain GPSC13 may be well adapted to survive in dynamic ecological niches, potentially contributing to its persistence and transmission. The chain and pair arrangement of these cocci may facilitate their colonization and interactions within their environment, possibly influencing their competitive success against other microbial communities. ↵↵In summary, the combination of Gram-positive characteristics, optimal growth temperature, and facultative anaerobic capabilities positions Streptococcus pneumoniae strain GPSC13 as a versatile organism capable of thriving in a variety of ecological settings, highlighting its potential role in microbial dynamics within diverse ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABAOJ000000000.1 Bac0011161 Streptococcus pneumoniae strain GPSC18 "Streptococcus pneumoniae strain GPSC18 is a Gram-positive coccus that typically occurs in pairs or chains. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic characteristics, allowing it to adapt to varying oxygen levels in its environment. ↵↵The habitat of S. pneumoniae strain GPSC18 is diverse, indicating its ability to colonize multiple niches, which may include both human hosts and environmental reservoirs. The arrangement of these bacteria in pairs or chains is characteristic of the genus Streptococcus and may influence their interactions with other microbial species and host organisms.↵↵Given its facultative anaerobic nature, S. pneumoniae strain GPSC18 likely possesses metabolic flexibility that enables it to survive in both aerobic and anaerobic conditions. This adaptability could play a significant role in the strain's ecological dynamics, particularly in fluctuating environments, and may inform its potential interactions within microbiomes. Understanding the specific habitats and environmental conditions that support the growth of this strain could provide valuable insights into its ecological role and behavior in both health and disease contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABBGR000000000.1 Bac0011162 Streptococcus pneumoniae strain GPSC9 "Streptococcus pneumoniae strain GPSC9 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. This strain is capable of thriving in diverse habitats, indicating its ecological versatility. As a facultative anaerobe, S. pneumoniae strain GPSC9 can grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions.↵↵The optimal growth temperature for this strain is 30.0°C, which suggests a preference for moderately warm environments, potentially reflecting the conditions found in various host-associated niches. This thermotolerance may also provide insights into its survival mechanisms in fluctuating temperatures encountered within different ecological systems.↵↵Understanding the growth characteristics and environmental adaptability of S. pneumoniae strain GPSC9 can enhance our knowledge of its ecological roles and interactions within microbial communities. Furthermore, the ability to thrive in multiple habitats underscores the importance of this strain in studying microbial dynamics in both natural and anthropogenic environments. This adaptability may inform future research on the strain's potential contributions to microbial diversity and its interactions with other microorganisms within its ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABBMV000000000.1 Bac0011163 Streptococcus pneumoniae strain GPSC21 "Streptococcus pneumoniae strain GPSC21 is a Gram-positive coccus that typically arranges itself in chains and pairs, reflecting its characteristic morphology. This strain thrives optimally at a temperature of 30.0°C, indicating its adaptability to moderate environmental conditions. As a facultative anaerobe, S. pneumoniae strain GPSC21 can grow in both the presence and absence of oxygen, allowing it to inhabit a variety of ecological niches.↵↵The habitat of this strain is described as multiple, suggesting a versatile lifestyle that may enable it to colonize different environments, ranging from human hosts to various ecological systems. The ability to adapt to varying oxygen levels and temperatures enhances its survival and potential for persistence in diverse habitats.↵↵Unique to S. pneumoniae, the chain and pair arrangement may play a role in its interaction with the host immune system, influencing its ability to form biofilms or evade phagocytosis. This trait could also affect its ecological dynamics, as the arrangement may facilitate communication and cooperation among cells in mixed communities. Understanding these characteristics of strain GPSC21 can contribute to broader insights into the ecological and biological roles of Streptococcus pneumoniae in its environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABBNO000000000.1 Bac0011164 Streptococcus pneumoniae strain GPSC22 "Streptococcus pneumoniae strain GPSC22 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. This strain thrives optimally at a temperature of 30.0°C, which may suggest an adaptive capacity to survive in varied environments. As a facultative anaerobe, GPSC22 can grow in both the presence and absence of oxygen, allowing it to inhabit diverse ecological niches and adapt to fluctuating oxygen levels.↵↵The ability of this strain to exist in multiple habitats indicates a versatile lifestyle, which may contribute to its survival in different ecological contexts. This adaptability is essential for its resilience in environments where nutrient availability and oxygen concentration can vary significantly. Understanding the specific habitats in which GPSC22 is found could provide insights into its ecological role and interactions with other microorganisms. Moreover, the arrangement of cells in chains or pairs may influence its social interactions, potentially affecting biofilm formation and community dynamics in its natural habitat. This characteristic highlights the importance of morphological traits in understanding the ecological strategies employed by Streptococcus pneumoniae strain GPSC22." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABBXJ000000000.1 Bac0011165 Streptococcus pneumoniae strain GPSC16 "Streptococcus pneumoniae strain GPSC16 is a Gram-positive coccus characterized by its arrangement in chains and pairs. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. The organism's habitat is diverse, suggesting a broad ecological versatility that may facilitate its survival in various niches.↵↵The coccoid morphology and chain-like arrangement are notable traits that distinguish S. pneumoniae from other streptococci, providing insights into its potential interactions within microbial communities. Its facultative anaerobic nature indicates an ability to adapt to fluctuating oxygen levels, which could be advantageous in diverse environments where oxygen availability varies. This metabolic flexibility may contribute to its ecological success in multiple habitats, ranging from human-associated environments to natural ecosystems.↵↵Understanding the traits of S. pneumoniae strain GPSC16 can inform further research into its ecological roles and interactions within microbial communities, highlighting the importance of environmental conditions in shaping the behavior and distribution of this organism." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABCQY000000000.1 Bac0011166 Streptococcus pneumoniae strain GPSC136 "Streptococcus pneumoniae strain GPSC136 is a Gram-positive, coccoid bacterium that typically arranges itself in chains or pairs. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth of GPSC136 occurs at a temperature of 30.0°C, suggesting a preference for mesophilic conditions, which is consistent with its ability to inhabit a variety of ecological niches.↵↵The habitat of Streptococcus pneumoniae strain GPSC136 is diverse, indicating its adaptability to different environments. This versatility may be linked to its potential roles in various ecosystems, where it can interact with other microbial communities and influence local microbiomes. Understanding the environmental adaptability of this strain could provide insights into its ecological significance and the role it plays in microbial dynamics.↵↵In summary, Streptococcus pneumoniae strain GPSC136 exemplifies the characteristics of a versatile and adaptable bacterium, capable of thriving in multiple habitats under varying oxygen conditions. This adaptability may contribute to its ecological interactions and persistence in diverse environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABCSP000000000.1 Bac0011167 Streptococcus pneumoniae strain GPSC129 "Streptococcus pneumoniae strain GPSC129 is a Gram-positive, coccoid bacterium that typically arranges itself in chains or pairs. This facultative anaerobe thrives optimally at 30.0°C, suggesting a preference for moderate temperature environments, which may reflect its adaptability to various ecological niches. The strain has been identified in multiple habitats, indicating its versatility and potential for diverse interactions within different microbial communities.↵↵The chain and pair arrangement of this strain may facilitate its survival and colonization in various environments, possibly enhancing its ability to form biofilms or interact with other microorganisms. Its facultative anaerobic metabolism allows GPSC129 to thrive in both aerobic and anaerobic conditions, which is advantageous for survival in fluctuating oxygen environments often encountered in natural and clinical settings. ↵↵Overall, the traits of Streptococcus pneumoniae strain GPSC129 highlight its potential ecological versatility and adaptive strategies, underscoring its significance within microbial ecosystems. Understanding these traits further could provide insights into its role in community dynamics and interactions within its habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABDQT000000000.1 Bac0011168 Streptococcus pneumoniae strain GPSC208 "Streptococcus pneumoniae strain GPSC208 is a Gram-positive cocci bacterium that typically arranges itself in pairs or chains. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. ↵↵S. pneumoniae is known for its diverse habitats, which can include various environments, though the specific ecological niches of strain GPSC208 are not detailed in the available data. The adaptability of this strain to multiple habitats, combined with its facultative anaerobic nature, suggests it may occupy a range of ecological contexts, potentially including both host-associated environments and surface ecosystems.↵↵The chain and pair arrangement of its cells could play a role in its survival and interaction within these habitats, possibly influencing its competitive dynamics and resilience in various environmental conditions. Further investigation into the ecological roles and interactions of strain GPSC208 could provide insights into its environmental adaptability and potential implications for microbiome studies." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABFMT000000000.1 Bac0011169 Streptococcus pneumoniae strain GPSC76 "Streptococcus pneumoniae strain GPSC76 is a Gram-positive cocci bacterium that typically exhibits a distinctive arrangement in chains or pairs. This strain thrives optimally at a temperature of 30.0°C and demonstrates facultative anaerobic growth, allowing it to adapt to various oxygen conditions. The habitat of S. pneumoniae strain GPSC76 is diverse, suggesting a broad ecological niche where it can survive and proliferate.↵↵Given its facultative anaerobic nature, S. pneumoniae strain GPSC76 may play a significant role in various environments, potentially influencing microbial community dynamics, particularly in oxygen-variable habitats. This adaptability underscores its ecological versatility, enabling it to occupy niches ranging from respiratory tracts to other habitats where oxygen levels fluctuate. The strain's ability to form chains or pairs may also contribute to its survival strategies in competitive ecosystems, where cooperative interactions could enhance its resilience and fitness in diverse microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABFMV000000000.1 Bac0011170 Streptococcus pneumoniae strain GPSC34 "Streptococcus pneumoniae strain GPSC34 is a Gram-positive coccus, typically arranged in chains or pairs. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions. ↵↵The habitat of S. pneumoniae strain GPSC34 is diverse, reflecting its adaptability to various environments. This flexibility in habitat and growth conditions may contribute to its survival and proliferation in different ecological niches. The chain and pair arrangement of its cells may facilitate the formation of biofilms, which are critical for its persistence in host tissues and environmental reservoirs.↵↵Understanding the growth characteristics and ecological adaptability of S. pneumoniae strain GPSC34 can provide insights into its potential interactions within diverse microbial communities. This strain’s ability to thrive in multiple habitats may influence its role in the microbiome and its interactions with other microorganisms, highlighting the importance of environmental factors in shaping microbial behavior and ecology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 CABFMY000000000.1 Bac0011171 Bradyrhizobium sp. STM 3843 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. STM 3843 551947 CAFK00000000.1 Bac0011172 Corynebacterium casei UCMA 3821 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium casei 1110505 CAFW00000000.1 Bac0011173 Leuconostoc citreum LBAE C10 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc citreum 1108974 CAGE00000000.1 Bac0011174 Xanthomonas citri pv. mangiferaeindicae LMG 941 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 1156940 CAHO00000000.1 Bac0011175 Phaeospirillum molischianum DSM 120 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum molischianum anaerobic 1083 CAHP00000000.1 Bac0011176 Methylacidiphilum fumariolicum SolV Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Candidatus Methylacidiphilum fumarolicum 1156937 CAHT00000000.1 Bac0011177 Microcystis aeruginosa 9807 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1126 CAIM00000000.1 Bac0011178 Richelia intracellularis HH01 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Richelia Richelia intracellularis 1165094 CAIY00000000.1 Bac0011179 Lactobacillus pasteurii CRBIP 24.76 "Lactobacillus pasteurii CRBIP 24.76 is a Gram-positive, rod-shaped bacterium characterized by its non-spore-forming nature and optimal growth temperature of 45.0°C. This thermophilic species thrives in elevated thermal environments, which may reflect its adaptation to specific ecological niches, such as those found in warm fermentation processes or certain natural habitats. ↵↵As a member of the Lactobacillus genus, L. pasteurii CRBIP 24.76 is likely involved in various fermentation processes, contributing to the production of lactic acid, although specific metabolic pathways and fermentation products for this strain are not detailed in the provided traits. Its Gram-positive cell wall structure may confer resistance to environmental stressors and influence its interactions with other microbial species.↵↵The adaptation to high temperatures suggests potential applications in biotechnological processes that require elevated temperatures, such as the production of fermented foods or biofuels. Additionally, the presence of this microbe in warm environments may indicate its role in the microbial dynamics of those ecosystems, possibly influencing nutrient cycling and microbial community structure. Overall, L. pasteurii CRBIP 24.76 exemplifies the diversity and specificity of thermophilic lactic acid bacteria, underlining their ecological significance and potential utility in industrial applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus pasteurii Gram-positive rod non-motile 45 thermophilic non-spore-forming 872327 CAKD00000000.1 Bac0011180 Cronobacter dublinensis 1210 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter dublinensis 1208656 CAKZ00000000.1 Bac0011181 Cronobacter dublinensis 582 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter dublinensis 1208661 CALA00000000.1 Bac0011182 Cronobacter sakazakii 696 "Cronobacter sakazakii 696 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe is an anaerobe, indicating that it thrives in environments devoid of oxygen, which may influence its survival and growth in host-associated habitats. Optimal growth of C. sakazakii 696 occurs at a temperature of 37.0°C, suggesting a preference for conditions similar to those found in warm-blooded hosts.↵↵The host-associated habitat of C. sakazakii 696 implies potential interactions with host organisms, which may include the establishment of symbiotic relationships or, alternatively, pathogenic interactions. The specific adaptations that allow this strain to persist within host-associated niches remain an area of interest, particularly given the diverse ecological roles that members of the Cronobacter genus can play. ↵↵Understanding the anaerobic nature and optimal growth temperature of C. sakazakii 696 may provide insights into its metabolic capabilities and ecological strategies, shedding light on how this microbe might interact with its environment and host organisms. Further investigation into its ecological role could elucidate potential implications for health, especially in contexts where interactions with the host's immune system are involved." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii Negative Rod No Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1208664 CALF00000000.1 Bac0011183 Bifidobacterium longum subsp. longum CECT 7347 "Bifidobacterium longum subsp. longum CECT 7347 is a Gram-positive, rod-shaped bacterium that typically exists in various arrangements, including clusters, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within the host environment. As an anaerobic organism, B. longum subsp. longum CECT 7347 is adapted to fermentative metabolism, making it well-suited for life in oxygen-deprived niches, such as the gastrointestinal tract of humans and other mammals.↵↵Given its habitat, this subspecies of Bifidobacterium is part of the complex microbiota that contributes to host health, likely playing a role in digestion and the maintenance of gut homeostasis. The presence of this microbe in the gut microbiome is associated with various beneficial effects, including the potential modulation of immune responses and the production of short-chain fatty acids through fermentation of dietary fibers. ↵↵Understanding the ecology of B. longum subsp. longum CECT 7347 highlights its importance not only in gut health but also in its potential interactions with other microbial species and the host's metabolic processes. This underscores the significance of maintaining a balanced gut microbiota, where strains like B. longum contribute to a well-functioning ecosystem within the host." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1205679 CALH00000000.1 Bac0011184 Rhizobium mesoamericanum STM3625 "Rhizobium mesoamericanum STM3625 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and does not form spores. This species thrives optimally at a temperature of 29.0°C, suggesting a preference for warm environments that may influence its ecological niches. As a member of the Rhizobium genus, it is likely to engage in symbiotic relationships with leguminous plants, facilitating nitrogen fixation in the soil. ↵↵The characteristics of R. mesoamericanum STM3625 may enable it to play a significant role in enhancing soil fertility and promoting plant growth in its native habitat. Its aerobic nature indicates that it requires oxygen for growth, which aligns with its potential symbiotic interactions in well-aerated soils. The absence of sporulation suggests that this species may be more susceptible to environmental stresses compared to spore-forming bacteria, highlighting the importance of its specific ecological conditions for survival and function. This combination of traits underscores its specialized role in sustainable agricultural practices, particularly in regions where optimal temperatures and aerobic conditions prevail." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium mesoamericanum Gram-negative rod aerobic 29 mesophilic non-spore-forming 1211777 CANI00000000.1 Bac0011185 Desulfotomaculum hydrothermale Lam5 "Desulfotomaculum hydrothermale Lam5 is a Gram-negative, rod-shaped bacterium that thrives under strictly anaerobic conditions, with an optimal growth temperature of 45.0°C. This microbe is non-spore-forming, which suggests that it relies on stable environments for survival rather than employing sporulation as a strategy to endure adverse conditions. ↵↵The anaerobic nature of D. hydrothermale Lam5 indicates its potential role in sulfate reduction processes, a critical aspect of biogeochemical cycling in environments such as hydrothermal systems. Its optimal growth at elevated temperatures aligns it with thermophilic microorganisms, which are often found in high-temperature ecosystems, such as deep-sea hydrothermal vents or geothermal hot springs.↵↵Understanding the metabolic pathways and ecological roles of D. hydrothermale Lam5 can provide insights into the microbial communities present in extreme environments and their contributions to nutrient cycling. This bacterium exemplifies the adaptability of life in extreme conditions, contributing to our understanding of microbial diversity and metabolic versatility in anaerobic, thermophilic ecosystems." Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulforamulus Desulforamulus hydrothermalis Gram-negative rod anaerobic 45 thermophilic non-spore-forming 412895 CAOS00000000.1 Bac0011186 Rhodococcus sp. AW25M09 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. AW25M09 1268303 CAPS00000000.1 Bac0011187 Arthrobacter sp. 4J27 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter siccitolerans 861266 CAQI00000000.1 Bac0011188 Mesotoga sp. PhosAc3 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga infera 1236046 CARH00000000.1 Bac0011189 Mesorhizobium metallidurans STM 2683 "Mesorhizobium metallidurans STM 2683 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic capabilities and is characterized by its non-spore-forming nature. This species belongs to the genus Mesorhizobium, which is known for its role in nitrogen fixation, particularly in symbiotic relationships with leguminous plants. ↵↵M. metallidurans STM 2683's Gram-negative cell wall structure is indicative of its potential interactions with various environmental factors, including its ability to adapt to metal-rich environments, which is suggested by its species name ""metallidurans."" The aerobic requirement highlights its dependency on oxygen for growth and energy production, which may influence its habitat preferences and ecological interactions.↵↵The non-spore-forming trait suggests that M. metallidurans STM 2683 relies on other survival strategies to endure adverse conditions, such as forming biofilms or engaging in metabolic adjustments. Understanding the traits of this microorganism can provide insights into its ecological roles, particularly in biogeochemical cycling and potential applications in bioremediation of contaminated environments. The ability of Mesorhizobium species to thrive in metal-rich soils may also elucidate their contributions to soil health and fertility, thereby supporting plant growth in challenging conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium metallidurans Gram-negative rod aerobic non-spore-forming 1297569 CAUM00000000.1 Bac0011190 Rhodococcus aetherivorans strain EsD8 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus aetherivorans 191292 CAVJ000000000.1 Bac0011191 Thermobrachium celere DSM 8682 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Thermobrachium Thermobrachium celere anaerobic 941824 CAVN000000000.1 Bac0011192 Firmicutes bacterium CAG:102 Bacillati Bacillota Firmicutes bacterium CAG:102 1262998 CAWG000000000.1 Bac0011193 Veillonella sp. CAG:933 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. CAG:933 1262980 CAWP000000000.1 Bac0011194 Blautia hydrogenotrophica CAG:147 "Blautia hydrogenotrophica CAG:147 is a Gram-positive, anaerobic bacterium known for its ability to thrive in oxygen-deprived environments. As a member of the Blautia genus, this microorganism exhibits traits characteristic of anaerobes, which are capable of fermentative metabolism. The absence of oxygen in its habitat suggests that B. hydrogenotrophica CAG:147 may play a significant role in gut microbiota, where oxygen levels are typically low, thereby contributing to the overall microbial community dynamics and metabolic processes.↵↵The capacity of Blautia hydrogenotrophica CAG:147 to utilize hydrogen and other substrates under anaerobic conditions may facilitate its involvement in the degradation of complex organic materials, potentially influencing nutrient cycling and energy flow in its ecosystem. This bacterium's metabolic functions could also have implications for the fermentation processes in the gastrointestinal tract, where it may assist in the breakdown of undigested carbohydrates, thereby enhancing the host's nutrient absorption and overall gut health.↵↵Understanding the specific metabolic pathways and interactions of B. hydrogenotrophica CAG:147 within the anaerobic niche not only highlights its ecological importance but also underscores the need for further investigations into its role in symbiotic relationships with other gut microbes. Such studies could illuminate how this bacterium and its relatives contribute to the maintenance of microbial balance and health in anaerobic environments." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia hydrogenotrophica Positive Anaerobe 1263061 CAWR000000000.1 Bac0011195 Eubacterium sp. CAG:86 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:86 1262895 CAXC000000000.1 Bac0011196 Firmicutes bacterium CAG:110 Bacillati Bacillota Firmicutes bacterium CAG:110 1263000 CAXG000000000.1 Bac0011197 Bacteroides sp. CAG:20 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:20 1262738 CAXI000000000.1 Bac0011198 Porphyromonas sp. CAG:1061 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. CAG:1061 1262916 CAXO000000000.1 Bac0011199 Eubacterium sp. CAG:146 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:146 1262879 CAXQ000000000.1 Bac0011200 Eubacterium sp. CAG:786 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:786 1262893 CAXS000000000.1 Bac0011201 Bifidobacterium adolescentis CAG:119 "Bifidobacterium adolescentis CAG:119 is a Gram-positive, rod-shaped anaerobic bacterium that predominantly exists as single cells. This microbe thrives at an optimal temperature of 37.0°C and is typically associated with host environments, suggesting its role in symbiotic relationships within the gastrointestinal tract of various mammals. ↵↵As an anaerobe, B. adolescentis CAG:119 relies on fermentation processes for energy production, utilizing substrates derived from dietary fibers and other carbohydrates that are not digestible by the host. This capability likely contributes to its ecological niche, where it plays a significant role in the fermentation process, producing short-chain fatty acids and other metabolites that can benefit the host's health. ↵↵The presence of B. adolescentis CAG:119 in the gut microbiota may assist in maintaining gut homeostasis, potentially influencing the immune system and preventing colonization by pathogenic bacteria. Given its specific habitat and metabolic characteristics, B. adolescentis CAG:119 exemplifies the intricate relationships that exist within the microbiome, highlighting the importance of anaerobic bacteria in digestive health and overall host well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles 1263057 CAXT000000000.1 Bac0011202 Roseburia inulinivorans CAG:15 "Roseburia inulinivorans CAG:15 is a Gram-positive, nonsporulating bacterium that thrives in anaerobic environments and is classified as a chemoheterotroph, utilizing organic compounds as its primary energy source. The optimal growth temperature for this microbe is 37.0 °C, indicating a preference for warm-blooded hosts or environments that mimic such conditions. ↵↵This species is part of the diverse microbial community that can be found in multiple habitats, suggesting a versatile adaptability to varying ecological niches. Its anaerobic nature implies its role in environments devoid of oxygen, which is common in the gastrointestinal tracts of mammals, where it may participate in complex fermentation processes. ↵↵The presence of Roseburia inulinivorans CAG:15 in such habitats underlines its potential contribution to gut health, possibly through the fermentation of dietary fibers, including inulin, a common prebiotic. This metabolic capability may enhance the production of short-chain fatty acids, which are known to support intestinal homeostasis and overall health. Thus, the distinctive traits of Roseburia inulinivorans CAG:15 not only highlight its physiological adaptations but also suggest its ecological importance in promoting beneficial microbial interactions within the gut ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia inulinivorans Positive No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1263105 CAXY000000000.1 Bac0011203 Tannerella sp. CAG:118 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella sp. CAG:118 1262978 CAYC000000000.1 Bac0011204 Firmicutes bacterium CAG:124 Bacillati Bacillota Firmicutes bacterium CAG:124 1263002 CAYD000000000.1 Bac0011205 Peptostreptococcus anaerobius CAG:621 "Peptostreptococcus anaerobius CAG:621 is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, utilizing a chemoheterotrophic metabolism. This microbe prefers an optimal growth temperature of 37.0°C, which aligns with the physiological conditions of mammalian hosts. P. anaerobius is part of a diverse group of anaerobic bacteria found in various habitats, suggesting a versatile ecological role within different microbial communities.↵↵The coccoid shape of P. anaerobius is characteristic of the genus Peptostreptococcus, which encompasses several species known for their anaerobic lifestyle. As a chemoheterotroph, P. anaerobius derives its energy from organic compounds, potentially contributing to the decomposition of organic matter in its environment, thereby playing a role in nutrient cycling. The ability to thrive in multiple habitats indicates that this organism may be well adapted to fluctuating conditions, which could include varied nutrient availability and interactions with other microbial species.↵↵Understanding the ecological niche and metabolic capabilities of P. anaerobius can provide insights into its role in microbial ecosystems, particularly in anaerobic environments where it may contribute to the overall balance of microbial communities. Further exploration of its interactions and functions within these environments could reveal more about its biological significance and potential applications in microbiology and biotechnology." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus anaerobius Positive Cocci No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1263100 CAYH000000000.1 Bac0011206 Clostridium sp. CAG:264 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:264 1262786 CAYM000000000.1 Bac0011207 Prevotella sp. CAG:1124 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:1124 1262920 CAYO000000000.1 Bac0011208 Eubacterium sp. CAG:161 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:161 1262881 CAYQ000000000.1 Bac0011209 Butyrivibrio crossotus CAG:259 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eshraghiella Eshraghiella crossota anaerobic 45851 CAYU000000000.1 Bac0011210 Prevotella sp. CAG:1185 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:1185 1262921 CAYW000000000.1 Bac0011211 Eubacterium sp. CAG:180 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:180 1262882 CAZC000000000.1 Bac0011212 Bifidobacterium longum CAG:69 "Bifidobacterium longum CAG:69 is a Gram-positive, rod-shaped bacterium that typically exists in various arrangements, including clusters, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within host organisms. Bifidobacterium longum CAG:69 is classified as an anaerobe, indicating that it grows in environments devoid of oxygen, which is characteristic of its natural habitat associated with the gastrointestinal tract of mammals. ↵↵As a member of the Bifidobacterium genus, this strain contributes to the complex microbial communities within the gastrointestinal ecosystem, potentially playing a role in maintaining gut health through its involvement in fermentation processes and modulation of the intestinal microbiota. The presence of Bifidobacterium longum CAG:69 in host-associated environments suggests its potential importance in symbiotic relationships, wherein it may aid in the digestion of dietary fibers and the production of beneficial metabolites. Furthermore, the ability of this strain to thrive in anaerobic conditions emphasizes its adaptation to the unique microenvironments within the gut, where oxygen levels are significantly lower than in the external environment. Thus, Bifidobacterium longum CAG:69 exemplifies the intricate dynamics of host-associated microbiota and their contributions to the overall health of the host organism." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1263059 CAZE000000000.1 Bac0011213 Clostridium sp. CAG:793 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:793 1262840 CAZG000000000.1 Bac0011214 Paraprevotella clara CAG:116 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella clara 1263095 CAZH000000000.1 Bac0011215 Eubacterium sp. CAG:603 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:603 1262891 CAZI000000000.1 Bac0011216 Prevotella sp. CAG:1092 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:1092 1262919 CAZL000000000.1 Bac0011217 Clostridium sp. CAG:780 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:780 1262839 CAZO000000000.1 Bac0011218 Ruminococcus torques CAG:61 "Ruminococcus torques CAG:61 is a Gram-positive, anaerobic coccus that belongs to the diverse genus Ruminococcus, which is primarily associated with the gastrointestinal tracts of various mammals. This microbe's Gram-positive cell wall structure suggests the presence of a thick peptidoglycan layer, which is characteristic of many members of the Firmicutes phylum. The coccoid morphology likely facilitates its survival in the anaerobic environments of the gut, where it may play a role in the fermentation of complex carbohydrates.↵↵As an anaerobic organism, Ruminococcus torques CAG:61 thrives in environments devoid of oxygen, which is typical for gut microbiota. The ability to metabolize polysaccharides could contribute to the overall fermentation processes within the gut, aiding in the breakdown of dietary fibers and the production of short-chain fatty acids, which are essential for host health.↵↵The presence of Ruminococcus torques CAG:61 in the gut microbiome may reflect its potential function in maintaining a balanced microbial community and supporting the digestion of plant materials. Its specific interactions with other gut microbes and its role in metabolic functions underscore the complexity of gut ecosystems. Further research may elucidate its contributions to host metabolism and its impact on gut health, particularly in the context of diet and microbial diversity." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter torques Positive Cocci Anaerobe 1263108 CAZS000000000.1 Bac0011219 Firmicutes bacterium CAG:194 Bacillati Bacillota Firmicutes bacterium CAG:194 1263008 CAZT000000000.1 Bac0011220 Firmicutes bacterium CAG:646 Bacillati Bacillota Firmicutes bacterium CAG:646 1262995 CAZW000000000.1 Bac0011221 Clostridium sp. CAG:122 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:122 1262773 CAZY000000000.1 Bac0011222 Bacteroides sp. CAG:661 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:661 1262746 CBAC000000000.1 Bac0011223 Clostridium hathewayi CAG:224 "Clostridium hathewayi CAG:224 is a Gram-positive, rod-shaped bacterium that demonstrates anaerobic growth and is capable of sporulation. This microbe thrives in environments with an optimal temperature of 37.0°C, which is consistent with the physiological conditions typically found within the animal intestinal microflora. As a chemoheterotroph, C. hathewayi CAG:224 utilizes organic compounds as its energy source, reflecting its adaptation to the nutrient-rich ecosystem of the gastrointestinal tract.↵↵The sporulation ability of this strain suggests a survival mechanism that allows it to withstand unfavorable conditions, a characteristic feature of many Clostridia species. Its presence in the intestinal microflora indicates a potential role in the complex microbial communities of animals, possibly contributing to the fermentation processes and overall gut health. Furthermore, the strictly anaerobic requirement highlights its ecological niche, as it is likely to be found in oxygen-depleted environments within the gut, where it may interact with other microbial inhabitants and impact the host's metabolic functions.↵↵Understanding the traits of Clostridium hathewayi CAG:224 enhances our knowledge of microbial diversity within the gut and may provide insights into the roles such organisms play in digestion and health maintenance within animal hosts." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi Positive Rod No 1 Anaerobic 37 Chemoheterotroph Animal intestinal microflora Sporulating 154046 CBAI000000000.1 Bac0011224 Bacteroides sp. CAG:702 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:702 1262747 CBAM000000000.1 Bac0011225 Bacteroides caccae CAG:21 "Bacteroides caccae CAG:21 is a Gram-negative anaerobic bacterium that is part of the genus Bacteroides, which is commonly found in the gastrointestinal tract of mammals. Its Gram-negative status indicates the presence of an outer membrane that can influence its interactions within the gut microbiome. As an anaerobe, B. caccae CAG:21 thrives in environments devoid of oxygen, suggesting adaptations that allow it to metabolize nutrients in the absence of this gas. ↵↵The metabolic pathways utilized by Bacteroides species often involve the fermentation of complex carbohydrates, highlighting their role in the breakdown of dietary fibers within the host's digestive system. This fermentation process produces short-chain fatty acids, which are beneficial for host health and play a role in maintaining gut homeostasis. ↵↵Additionally, the presence of Bacteroides caccae CAG:21 in the gut microbiota may contribute to the competitive dynamics among microbial populations, potentially influencing the overall microbial diversity and stability of the intestinal ecosystem. Understanding the specific functions and interactions of B. caccae CAG:21 within the gut microbiome can provide insights into its role in digestion and immune modulation, emphasizing its importance in maintaining gastrointestinal health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe 1263037 CBAN000000000.1 Bac0011226 Roseburia sp. CAG:18 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:18 1262941 CBAP000000000.1 Bac0011227 Coprococcus eutactus CAG:665 "Coprococcus eutactus CAG:665 is a Gram-positive, anaerobic coccus characterized by its spherical shape. This microbe is part of the diverse microbial community found in the gastrointestinal tract of humans and animals, functioning as an important component in the fermentation of dietary fibers. Its anaerobic nature indicates that it thrives in environments devoid of oxygen, which is typical for many gut bacteria that contribute to the breakdown of complex carbohydrates.↵↵The ability of C. eutactus to ferment substrates allows it to produce short-chain fatty acids (SCFAs), which play a pivotal role in gut health and metabolism. These SCFAs are known to provide energy to colonocytes and can influence host immune responses. While specific metabolic pathways of C. eutactus CAG:665 are not detailed in the available data, its classification within the Coprococcus genus suggests a potential for involvement in the degradation of polysaccharides and the production of beneficial metabolites.↵↵Given its anaerobic lifestyle and shape, C. eutactus CAG:665 likely interacts with other members of the gut microbiota, potentially contributing to the maintenance of microbial diversity and stability in the intestinal environment. Understanding the role of such microbes is crucial, as they may offer insights into the complex interplay between diet, microbiome composition, and overall health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus eutactus Positive Cocci Anaerobe 1263071 CBAW000000000.1 Bac0011228 Blautia sp. CAG:257 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. CAG:257 1262756 CBBB000000000.1 Bac0011229 Fusobacterium sp. CAG:649 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CAG:649 1262900 CBBC000000000.1 Bac0011230 Clostridium bartlettii CAG:1329 "Clostridium bartlettii CAG:1329 is a Gram-positive, obligate anaerobic bacterium. This organism thrives in environments devoid of oxygen, which is characteristic of the Clostridium genus, known for its association with anaerobic conditions. The Gram-positive nature of C. bartlettii CAG:1329 suggests a thick peptidoglycan layer in its cell wall, a feature that is often associated with the ability to withstand harsh conditions, including those encountered in the gastrointestinal tract of various hosts. ↵↵As an obligate anaerobe, C. bartlettii CAG:1329 relies on fermentation processes for energy production, which may contribute to its ecological role in decomposing organic matter in anaerobic environments. The metabolic pathways employed by this microbe enable it to utilize substrates that are not accessible to aerobic organisms, potentially impacting nutrient cycling in its habitat. ↵↵The specific ecological niches occupied by C. bartlettii CAG:1329 are not delineated in the available data, but its anaerobic lifestyle suggests a potential role in the microbiome of environments such as the intestines of animals or in anaerobic sediments. This highlights the importance of such microbes in maintaining the balance of microbial communities in oxygen-depleted environments, which can influence broader ecological processes, such as organic matter decomposition and nutrient availability." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Intestinibacter Intestinibacter bartlettii Positive Obligate anaerobe 261299 CBBD000000000.1 Bac0011231 Ruminococcus sp. CAG:488 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:488 1262959 CBBI000000000.1 Bac0011232 Roseburia sp. CAG:197 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:197 1262943 CBBL000000000.1 Bac0011233 Lactobacillus amylovorus CAG:719 "Lactobacillus amylovorus CAG:719 is a Gram-positive, rod-shaped bacterium that typically exists in chains and is categorized as an anaerobe, thriving in environments devoid of oxygen. This strain is known to inhabit multiple ecological niches, which may include the gastrointestinal tracts of various animals and possibly plant materials, where it plays a role in the fermentation processes. ↵↵As a member of the Lactobacillus genus, L. amylovorus CAG:719 is likely involved in the breakdown of carbohydrates, particularly starches, into fermentable sugars, contributing to the production of lactic acid. The anaerobic nature of this strain suggests its metabolic pathways are adapted to environments with limited or no oxygen availability, which is characteristic of many lactobacilli that are integral to fermentation processes in both natural and industrial contexts.↵↵The ability of L. amylovorus CAG:719 to thrive in diverse habitats may provide insights into its potential applications in food science and biotechnology, particularly in developing probiotic formulations or enhancing the fermentation of food products. Understanding its ecological role could also shed light on its interactions within microbial communities and its contributions to nutrient cycling in anaerobic environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains 1263084 CBBM000000000.1 Bac0011234 Lachnospiraceae bacterium CAG:25 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium CAG:25 1262984 CBBP000000000.1 Bac0011235 Firmicutes bacterium CAG:536 Bacillati Bacillota Firmicutes bacterium CAG:536 1263028 CBBQ000000000.1 Bac0011236 Eubacterium eligens CAG:72 "Eubacterium eligens CAG:72 is a Gram-negative, rod-shaped bacterium that is associated with host environments, primarily exhibiting anaerobic metabolic characteristics. This microbe thrives in oxygen-limited conditions, aligning with its classification as an anaerobe. Its Gram-negative status indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions within the host and its resistance to certain antimicrobial agents.↵↵Eubacterium eligens CAG:72's association with host organisms suggests a potential role within the microbiota, possibly contributing to metabolic processes or influencing host health. Understanding the specific interactions of this bacterium with its host environment could provide insights into its ecological niche and the broader implications for microbial communities within the host. Further research into its metabolic pathways and ecological roles could elucidate its contributions to host-associated microbiomes, particularly in anaerobic environments where it may play a part in nutrient cycling or maintaining homeostasis." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira eligens Negative Rod 1 Anaerobe Mesophilic HostAssociated Free living 39485 CBBU000000000.1 Bac0011237 Bacteroides stercoris CAG:120 "Bacteroides stercoris CAG:120 is a Gram-negative, anaerobic bacterium that is part of the diverse microbiota found in the gastrointestinal tract of humans and other animals. As an anaerobe, B. stercoris CAG:120 thrives in environments devoid of oxygen, where it plays a critical role in the fermentation of complex carbohydrates. This metabolic capability contributes to the breakdown of dietary fibers, facilitating nutrient absorption and promoting a balanced gut microbiome.↵↵The Gram-negative nature of B. stercoris CAG:120 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this bacterial group. The outer membrane is typically composed of lipopolysaccharides, which can influence the bacterium's interactions with its environment, including its resistance to certain antibiotics and its ability to evade immune responses.↵↵Understanding the metabolic activities of Bacteroides stercoris CAG:120 could provide insights into its functional contributions to gut health and disease. Given its role in carbohydrate fermentation, this bacterium may also impact the production of short-chain fatty acids, which are important for maintaining gut integrity and regulating immune responses. Further research into B. stercoris CAG:120 may elucidate its specific functions within the gut microbiome and its potential implications for human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 1263053 CBBX000000000.1 Bac0011238 Dialister sp. CAG:486 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister sp. CAG:486 1262870 CBBY000000000.1 Bac0011239 Clostridium sp. CAG:138 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:138 1262775 CBBZ000000000.1 Bac0011240 Roseburia intestinalis CAG:13 "Roseburia intestinalis CAG:13 is a Gram-positive, rod-shaped bacterium that thrives as a nonsporulating anaerobe within the intestinal microflora of animals. This microbe exhibits a chemoheterotrophic metabolism, utilizing organic compounds as energy sources, which is characteristic of many members of the gut microbiota.↵↵Optimal growth for R. intestinalis CAG:13 occurs at 37.0°C, aligning with the physiological conditions typically found in the intestines of warm-blooded animals. The nonsporulating nature of this bacterium suggests a reliance on stable environmental conditions for survival, as it does not produce spores to endure unfavorable conditions.↵↵The presence of R. intestinalis CAG:13 in the gut microbiome is indicative of its potential role in maintaining gut health and modulating the intestinal environment. Given its anaerobic requirement, this microbe likely contributes to the fermentation processes occurring in the gut, aiding in the breakdown of complex carbohydrates and influencing the overall composition of gut microbial communities.↵↵Further studies could elucidate the specific metabolic pathways utilized by R. intestinalis CAG:13 and its interactions with host-derived substrates, highlighting its potential contributions to digestive health and the intricate balance of the intestinal ecosystem. Understanding the functional roles of such microbes is essential, as they may have implications for gut health and the development of microbiome-targeted therapies." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia intestinalis Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1263104 CBCC000000000.1 Bac0011241 Clostridium sp. CAG:245 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:245 1262784 CBCD000000000.1 Bac0011242 Clostridium sp. CAG:169 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:169 1262778 CBCF000000000.1 Bac0011243 Clostridium sp. CAG:510 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:510 1262816 CBCI000000000.1 Bac0011244 Bacteroides sp. CAG:530 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:530 1262741 CBCL000000000.1 Bac0011245 Firmicutes bacterium CAG:238 Bacillati Bacillota Firmicutes bacterium CAG:238 1263011 CBCS000000000.1 Bac0011246 Bacteroides sp. CAG:709 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:709 1262748 CBCT000000000.1 Bac0011247 Lachnospiraceae bacterium CAG:215 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium CAG:215 1262985 CBCV000000000.1 Bac0011248 Odoribacter splanchnicus CAG:14 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter splanchnicus 1263090 CBCZ000000000.1 Bac0011249 Bacteroides sp. CAG:633 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:633 1262744 CBDA000000000.1 Bac0011250 Clostridium sp. CAG:221 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:221 1262780 CBDC000000000.1 Bac0011251 Eubacterium hallii CAG:12 "Eubacterium hallii CAG:12 is a Gram-positive, nonsporulating bacterium that thrives optimally at a temperature of 37.0°C, indicating its potential association with warm-blooded hosts or environments. As a chemoheterotroph, this microbe utilizes organic compounds as its energy source, which suggests its role in the degradation of complex organic matter within its diverse habitats.↵↵Eubacterium hallii CAG:12 is strictly anaerobic, indicating that it is adapted to environments devoid of oxygen. This trait limits its presence in aerobic conditions but positions it favorably in anaerobic niches, such as the gastrointestinal tracts of various organisms or other oxygen-poor environments, where it could contribute to microbial community dynamics.↵↵The ability of Eubacterium hallii CAG:12 to thrive in multiple habitats under anaerobic conditions highlights its potential significance in various ecological contexts, particularly in the decomposition processes and nutrient cycling within anaerobic ecosystems. Understanding its metabolic pathways and interactions within microbial communities may provide insights into its ecological roles, particularly in relation to gut microbiota dynamics and overall host health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Anaerobutyricum hallii Positive No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 39488 CBDD000000000.1 Bac0011252 Blautia sp. CAG:52 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. CAG:52 1262758 CBDE000000000.1 Bac0011253 Clostridium sp. CAG:557 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:557 1262819 CBDG000000000.1 Bac0011254 Oscillibacter sp. CAG:241 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Oscillibacter sp. CAG:241 1262911 CBDI000000000.1 Bac0011255 Firmicutes bacterium CAG:137 Bacillati Bacillota Firmicutes bacterium CAG:137 1263004 CBDK000000000.1 Bac0011256 Phascolarctobacterium sp. CAG:266 Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium sp. CAG:266 1262915 CBDN000000000.1 Bac0011257 Ruminococcus sp. CAG:177 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:177 1262952 CBDQ000000000.1 Bac0011258 Clostridium sp. CAG:217 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:217 1262779 CBDU000000000.1 Bac0011259 Eubacterium sp. CAG:248 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:248 1262885 CBDZ000000000.1 Bac0011260 Eubacterium sp. CAG:252 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:252 1262887 CBEA000000000.1 Bac0011261 Bacteroides cellulosilyticus CAG:158 "Bacteroides cellulosilyticus CAG:158 is a Gram-negative, obligate anaerobic bacterium that plays a significant role in the degradation of cellulose. This microbe thrives in environments devoid of oxygen, which is characteristic of its metabolic requirements. As a member of the Bacteroidetes phylum, B. cellulosilyticus CAG:158 is equipped with enzymatic pathways that enable it to effectively hydrolyze complex polysaccharides, particularly cellulose, into simpler sugars. This capability is crucial for the microbial digestion of plant material and contributes to nutrient cycling within anaerobic habitats, such as the gastrointestinal tracts of various herbivorous animals.↵↵The anaerobic nature of B. cellulosilyticus CAG:158 limits its growth to environments where oxygen is absent, highlighting its specialization in breaking down fibrous plant materials in anaerobic conditions. This trait not only underlines its ecological significance in the digestion processes of herbivores but also suggests potential applications in biotechnology, particularly in bioconversion and biofuel production, where cellulose degradation is a critical step. Furthermore, the presence of Bacteroides species in diverse anaerobic ecosystems underscores their importance in maintaining microbial balance and facilitating energy flow within these environments. The metabolic versatility of B. cellulosilyticus CAG:158 exemplifies the complex interactions that occur within microbial communities, particularly in relation to cellulose degradation and energy transfer." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus Negative Anaerobe 1263038 CBEB000000000.1 Bac0011262 Bacteroides clarus CAG:160 "Bacteroides clarus CAG:160 is a Gram-negative, strictly anaerobic bacterium that belongs to the genus Bacteroides, which is notable for its significant role in the human gut microbiome. As a member of this genus, Bacteroides clarus CAG:160 is expected to participate in the fermentation of complex carbohydrates, contributing to the overall metabolic activities within the intestinal environment. ↵↵The anaerobic nature of Bacteroides clarus CAG:160 suggests that it thrives in low-oxygen conditions, which are characteristic of the human gastrointestinal tract. This trait is essential for its survival and function, as oxygen can be toxic to anaerobic organisms. The ability to grow and metabolize substrates in such environments allows Bacteroides clarus CAG:160 to play a role in maintaining gut health, potentially influencing host metabolism and immune responses.↵↵Further research into the specific metabolic pathways utilized by Bacteroides clarus CAG:160 could elucidate its contributions to the degradation of dietary fibers and production of short-chain fatty acids, which are beneficial for host health. Understanding these interactions may provide insights into how this microbe and others within its genus can affect gut homeostasis and overall well-being." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides clarus Negative Anaerobe 1263039 CBEF000000000.1 Bac0011263 Firmicutes bacterium CAG:170 Bacillati Bacillota Firmicutes bacterium CAG:170 1263006 CBEH000000000.1 Bac0011264 Clostridium sp. CAG:253 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:253 1262785 CBEI000000000.1 Bac0011265 Firmicutes bacterium CAG:41 Bacillati Bacillota Firmicutes bacterium CAG:41 1263021 CBEM000000000.1 Bac0011266 Bacteroides sp. CAG:443 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:443 1262739 CBEN000000000.1 Bac0011267 Eubacterium sp. CAG:202 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:202 1262884 CBEO000000000.1 Bac0011268 Clostridium sp. CAG:343 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:343 1262796 CBEQ000000000.1 Bac0011269 Ruminococcus sp. CAG:55 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:55 1262960 CBEU000000000.1 Bac0011270 Clostridium sp. CAG:508 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:508 1262815 CBFC000000000.1 Bac0011271 Clostridium sp. CAG:352 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:352 1262798 CBFG000000000.1 Bac0011272 Oscillibacter sp. CAG:155 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Oscillibacter sp. CAG:155 1262910 CBFT000000000.1 Bac0011273 Eubacterium rectale CAG:36 "Eubacterium rectale CAG:36 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives as an anaerobe, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, which aligns with its habitat in various anaerobic environments, potentially including the human gastrointestinal tract, where similar species are known to reside.↵↵The anaerobic nature of E. rectale CAG:36 suggests its role in fermentation processes, contributing to the complex microbial ecosystems found in the gut. This organism may play a significant part in the degradation of dietary fibers and other organic materials, thereby influencing nutrient availability and overall gut health. Its presence in multiple habitats indicates a versatile ecological adaptability, which may reflect a broader ecological niche that encompasses diverse organic substrates.↵↵Understanding the traits of Eubacterium rectale CAG:36 could provide insight into the functional roles of gut microbiota in digestion and metabolism, highlighting the importance of anaerobic bacteria in maintaining the balance of microbial communities in various environments. Further investigations may reveal its specific contributions to metabolic pathways or its interactions with other microbial species, enhancing our understanding of microbial dynamics in health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 CBFV000000000.1 Bac0011274 Firmicutes bacterium CAG:227 Bacillati Bacillota Firmicutes bacterium CAG:227 1263010 CBGC000000000.1 Bac0011275 Ruminococcus sp. CAG:382 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:382 1262957 CBGH000000000.1 Bac0011276 Prevotella sp. CAG:592 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:592 1262931 CBGI000000000.1 Bac0011277 Clostridium sp. CAG:349 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:349 1262797 CBGK000000000.1 Bac0011278 Phascolarctobacterium succinatutens CAG:287 "Phascolarctobacterium succinatutens CAG:287 is a Gram-negative, nonsporulating anaerobic bacterium that functions as a chemoheterotroph, deriving its energy from organic compounds. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions typically found within animal intestinal microflora. As a member of this ecological niche, P. succinatutens is likely to play a role in the complex interactions and metabolic processes that occur within the gut environment.↵↵The anaerobic nature of P. succinatutens suggests that it may be involved in fermentative processes that contribute to the degradation of dietary fibers and other complex carbohydrates, potentially producing beneficial byproducts such as short-chain fatty acids. These metabolites are known to be crucial for maintaining gut health and influencing host metabolism. Thus, understanding the specific activities of Phascolarctobacterium succinatutens within the intestinal ecosystem could provide insights into its contributions to host digestion and overall gut microbiota balance. Further investigation into its metabolic pathways and interactions with other gut microorganisms may reveal its significance in health and disease states associated with the intestinal microbiome." Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Phascolarctobacterium Phascolarctobacterium succinatutens Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1263101 CBGL000000000.1 Bac0011279 Alistipes sp. CAG:435 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. CAG:435 1262695 CBGN000000000.1 Bac0011280 Clostridium sp. CAG:798 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:798 1262841 CBGO000000000.1 Bac0011281 Prevotella sp. CAG:732 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:732 1262934 CBGP000000000.1 Bac0011282 Alistipes sp. CAG:29 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. CAG:29 1262694 CBGS000000000.1 Bac0011283 Clostridium sp. CAG:452 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:452 1262810 CBGT000000000.1 Bac0011284 Firmicutes bacterium CAG:94 Bacillati Bacillota Firmicutes bacterium CAG:94 1262989 CBGU000000000.1 Bac0011285 Bacteroides sp. CAG:714 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:714 1262749 CBGW000000000.1 Bac0011286 Roseburia sp. CAG:309 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:309 1262945 CBGX000000000.1 Bac0011287 Clostridium sp. CAG:356 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:356 1262800 CBGY000000000.1 Bac0011288 Bacteroides sp. CAG:875 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. CAG:875 1262752 CBHD000000000.1 Bac0011289 Ruminococcus sp. CAG:379 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:379 1262956 CBHF000000000.1 Bac0011290 Firmicutes bacterium CAG:882 Bacillati Bacillota Firmicutes bacterium CAG:882 1262991 CBHL000000000.1 Bac0011291 Clostridium sp. CAG:62 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:62 1262828 CBHQ000000000.1 Bac0011292 Ruminococcus sp. CAG:9 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:9 1262967 CBHS000000000.1 Bac0011293 Tannerella sp. CAG:51 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella sp. CAG:51 1262979 CBHX000000000.1 Bac0011294 Akkermansia sp. CAG:344 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp. CAG:344 3134035 CBIA000000000.1 Bac0011295 Prevotella sp. CAG:485 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:485 1262927 CBIE000000000.1 Bac0011296 Ruminococcus sp. CAG:330 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:330 1262954 CBIH000000000.1 Bac0011297 Clostridium sp. CAG:470 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:470 1262812 CBII000000000.1 Bac0011298 Dorea longicatena CAG:42 "Dorea longicatena CAG:42 is a Gram-positive, anaerobic bacterium that has garnered attention for its potential roles in various microbial ecosystems. As a member of the genus Dorea, it is characterized by its ability to thrive in oxygen-depleted environments, which is typical of many gut-associated microorganisms. The anaerobic nature of D. longicatena CAG:42 suggests that it may be involved in fermentation processes, potentially contributing to the breakdown of complex carbohydrates within its habitat. ↵↵This microbe's Gram-positive cell wall structure implies the presence of a thick peptidoglycan layer, which is a hallmark of many beneficial gut bacteria, providing resistance to certain environmental stresses. While specific ecological roles and interactions with host organisms remain to be thoroughly investigated, the anaerobic metabolism of D. longicatena CAG:42 may facilitate the production of short-chain fatty acids, which are important for gut health and host energy metabolism.↵↵Moreover, the ecological significance of Dorea longicatena CAG:42 may extend to its interactions with other gut microbiota, potentially influencing community dynamics and metabolic functions within the gastrointestinal tract. Understanding the precise roles of such anaerobic bacteria can provide deeper insights into microbiome health and its implications for host physiology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea longicatena Positive Anaerobe 1263074 CBIK000000000.1 Bac0011299 Eubacterium dolichum CAG:375 "Eubacterium dolichum CAG:375 is a Gram-positive bacterium characterized as an obligate anaerobe. This microbe thrives in environments devoid of oxygen, which is reflective of its metabolic adaptations that favor fermentation processes. Gram-positive bacteria are recognized for their thick peptidoglycan layer, which plays a crucial role in cell wall integrity and can influence their interactions with other microorganisms and the host environment.↵↵As an obligate anaerobe, Eubacterium dolichum CAG:375 occupies niches where oxygen is limited or entirely absent, such as the gastrointestinal tract of mammals. Its anaerobic lifestyle suggests a metabolic pathway that relies on fermentation substrates, potentially utilizing organic compounds present in the gut. This adaptation may contribute to the overall microbial balance within its habitat, influencing nutrient cycling and the degradation of complex organic materials.↵↵Understanding the specific ecological role of Eubacterium dolichum CAG:375 may provide insights into its interactions with other gut microbiota and its potential contributions to host health. The presence of such obligate anaerobes is crucial in maintaining a stable gut ecosystem, as they may facilitate the digestion of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host metabolism. Thus, Eubacterium dolichum CAG:375 exemplifies the intricate relationships that exist within anaerobic microbial communities and their collective impact on the environment they inhabit." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacillus Amedibacillus dolichus Positive Obligate anaerobe 31971 CBIN000000000.1 Bac0011300 Catenibacterium sp. CAG:290 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Catenibacterium Catenibacterium sp. CAG:290 1262767 CBIQ000000000.1 Bac0011301 Prevotella stercorea CAG:629 "Prevotella stercorea CAG:629 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0 °C. This species is a member of the gut microbiome, specifically found in the guts of infants, where it plays a role in the complex microbial ecosystem.↵↵As a representative of the Prevotella genus, P. stercorea is known for its ability to ferment carbohydrates, contributing to the metabolic processes within the gut. The presence of this bacterium in infant gut microbiota may be associated with the establishment of a healthy microbial community during early development. The anaerobic nature of P. stercorea suggests its adaptation to the low-oxygen environment of the gut, where it may interact with other microbial species, influencing overall gut health and development.↵↵The unique ecological niche occupied by Prevotella stercorea CAG:629 underlines its potential importance in the metabolic pathways of infants and highlights the significance of maintaining a balanced gut microbiome in early life stages. Further studies could elucidate the specific roles of this bacterium in nutrient absorption and immune system development, enhancing our understanding of its contribution to infant health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Leyella Leyella stercorea Gram-negative rod non-motile anaerobic 37 mesophilic gut microbiome; infant gut non-spore-forming 363265 CBIT000000000.1 Bac0011302 Eubacterium sp. CAG:38 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:38 1262889 CBIU000000000.1 Bac0011303 Prevotella sp. CAG:279 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:279 1262924 CBIX000000000.1 Bac0011304 Faecalibacterium sp. CAG:74 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. CAG:74 1262897 CBJB000000000.1 Bac0011305 Roseburia sp. CAG:303 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:303 1262944 CBJD000000000.1 Bac0011306 Clostridium sp. CAG:269 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:269 1262788 CBJE000000000.1 Bac0011307 Prevotella sp. CAG:873 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:873 1262936 CBJF000000000.1 Bac0011308 Parabacteroides sp. CAG:409 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. CAG:409 1262913 CBJG000000000.1 Bac0011309 Clostridium sp. CAG:277 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. CAG:277 1262790 CBJK000000000.1 Bac0011310 Bacteroides thetaiotaomicron CAG:40 "Bacteroides thetaiotaomicron CAG:40 is a Gram-negative, rod-shaped anaerobic bacterium that is typically associated with host environments. This microbe thrives in anaerobic conditions, which is characteristic of its natural habitat within the gastrointestinal tract of mammals. As part of the Bacteroides genus, B. thetaiotaomicron plays a significant role in the digestion of complex carbohydrates, contributing to the host's capacity to extract energy from dietary fibers. ↵↵The presence of B. thetaiotaomicron in the gut microbiota is believed to be essential for maintaining a balanced microbial community, which can influence various physiological processes within the host. Its ability to degrade polysaccharides may enhance nutrient availability and promote health benefits such as improved gut barrier function and modulation of the immune response. ↵↵The ecological interaction of Bacteroides thetaiotaomicron CAG:40 with its host suggests a symbiotic relationship where the bacterium aids in the digestion of plant-derived compounds, while the host provides a stable habitat rich in nutrients. This underscores the importance of anaerobic bacteria in gut health and their potential contributions to metabolic processes that benefit both the microbe and the host. Understanding the specific roles of such strains could lead to insights into gut microbiome dynamics and their implications for digestive health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 1263054 CBJO000000000.1 Bac0011311 Ruminococcus sp. CAG:353 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:353 1262955 CBJQ000000000.1 Bac0011312 Prevotella sp. CAG:891 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:891 1262937 CBJT000000000.1 Bac0011313 Fusobacterium sp. CAG:815 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CAG:815 1262901 CBJW000000000.1 Bac0011314 Ruminococcus sp. CAG:624 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. CAG:624 1262965 CBKC000000000.1 Bac0011315 Megasphaera elsdenii CAG:570 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera elsdenii anaerobic 1263087 CBKE000000000.1 Bac0011316 Eubacterium sp. CAG:76 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. CAG:76 1262892 CBKG000000000.1 Bac0011317 Prevotella sp. CAG:617 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. CAG:617 1262933 CBKM000000000.1 Bac0011318 Roseburia sp. CAG:100 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. CAG:100 1262940 CBKV000000000.1 Bac0011319 Pseudomonas sp. SHC52 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SHC52 984195 CBLV000000000.1 Bac0011320 Parasaccharibacter apium strain AM168 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Parasaccharibacter Parasaccharibacter apium 1510841 CBLY000000000.1 Bac0011321 Xenorhabdus bovienii str. Intermedium Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus bovienii 1379677 CBTB000000000.1 Bac0011322 Lactobacillus helveticus CIRM-BIA 953 "Lactobacillus helveticus CIRM-BIA 953 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. L. helveticus is known to inhabit a variety of ecological niches, suggesting its adaptability to diverse habitats. ↵↵The characteristics of L. helveticus CIRM-BIA 953 position it as a significant member of the Lactobacillus genus, which is renowned for its role in fermentation processes, particularly in dairy products. The formation of chains may enhance its ability to interact with other microbial populations, potentially influencing community dynamics in its natural habitats. ↵↵Furthermore, the facultative anaerobic nature of this strain allows it to maintain metabolic versatility, enabling survival and growth under varying oxygen conditions. This adaptability could provide insights into its potential applications in food technology, as well as its interactions within the gastrointestinal microbiota of animals or humans. Understanding the ecological role of L. helveticus CIRM-BIA 953 could contribute to advancements in probiotic research and the development of functional foods, underscoring the importance of this microbe in both industrial and health-related contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1226335 CBUH000000000.1 Bac0011323 Lactococcus lactis subsp. lactis Dephy 1 "Lactococcus lactis subsp. lactis Dephy 1 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is notable for its optimal growth temperature of 40.0°C, indicating a preference for warmer conditions, which may be relevant in certain food fermentation processes where temperature control is critical.↵↵Lactococcus lactis subsp. lactis Dephy 1 is found in multiple habitats, which suggests a versatile ecological niche, potentially including environments associated with dairy products, as well as plant and soil microbiomes. The ability to adapt to varying oxygen levels may enhance its survival and functionality in diverse ecosystems, including fermented foods.↵↵This strain's unique combination of traits suggests that it could play a significant role in biotechnological applications, particularly in the dairy industry, where its metabolic capabilities may be harnessed for the production of lactic acid and other fermentation products. Understanding the specific conditions that favor the growth and activity of Lactococcus lactis subsp. lactis Dephy 1 could provide valuable insights into optimizing fermentation processes and enhancing the quality of fermented foods. Such adaptations underscore the ecological importance of this microbe in both natural and industrial contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1390360 CBUJ000000000.1 Bac0011324 Lactobacillus helveticus CIRM-BIA 951 "Lactobacillus helveticus CIRM-BIA 951 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This microbe is versatile in its habitat, being able to thrive in diverse environments, which may include dairy products and the gastrointestinal tracts of various animals. ↵↵As a member of the Lactobacillus genus, L. helveticus is known for its role in the fermentation of milk and other substrates, contributing to the production of lactic acid and other metabolites that can influence the flavor and texture of fermented foods. The facultative anaerobic nature of this strain allows it to adapt to varying oxygen levels, enabling it to survive both aerobic and anaerobic conditions, a trait that is beneficial in its ecological niches.↵↵The ability to form chains may enhance its stability and survival in complex microbial communities, potentially influencing its interactions with other microorganisms. Furthermore, the adaptability of L. helveticus CIRM-BIA 951 to multiple habitats suggests it may play a significant role in maintaining microbial diversity and stability in its environments, positioning it as an important player in both food fermentation processes and gut microbiota dynamics. Understanding the characteristics of this strain may provide insights into its utilization in probiotic applications and its impact on food science and nutrition." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1226334 CBUK000000000.1 Bac0011325 Microbacterium sp. C448 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. C448 1177594 CBVQ000000000.1 Bac0011326 Klebsiella pneumoniae IS46 "Klebsiella pneumoniae IS46 is a Gram-negative, nonsporulating rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This microbe is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon sources. It thrives optimally at a temperature of 37.0°C, which aligns with its host-associated habitat, suggesting an adaptation to the warm environment of mammalian hosts.↵↵As a facultative anaerobe, Klebsiella pneumoniae IS46 can grow in both the presence and absence of oxygen, allowing it to occupy diverse niches within host organisms, including various bodily fluids and tissues. This adaptability is significant for its survival and metabolic versatility, enabling it to exploit a range of environmental conditions encountered within host environments.↵↵Understanding the traits of Klebsiella pneumoniae IS46 may provide insights into its ecological role within host-associated microbiomes, where it may contribute to complex interactions with other microbial species and the host immune system. Its ability to thrive in fluctuating oxygen levels and its unique arrangement patterns may further influence its competitive dynamics in such environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1432553 CBWL000000000.1 Bac0011327 Klebsiella pneumoniae IS53 "Klebsiella pneumoniae IS53 is a Gram-negative, rod-shaped bacterium that typically arranges itself in chains, pairs, or as single cells. As a nonsporulating organism, K. pneumoniae IS53 thrives optimally at 37.0°C, which aligns with the body temperature of warm-blooded hosts. This bacterium is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which is consistent with its host-associated habitat. K. pneumoniae IS53 exhibits facultative anaerobic respiration, allowing it to survive in both aerobic and anaerobic environments.↵↵The adaptation of K. pneumoniae IS53 to a host-associated niche suggests a potential role in the microbial communities of its hosts, possibly contributing to the complex interactions within the host's microbiome. Furthermore, the organism's metabolic versatility may enhance its survival and proliferation in varying environmental conditions encountered within host systems. Understanding the traits of K. pneumoniae IS53 can provide insights into its ecological role and interactions within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1432554 CBWM000000000.1 Bac0011328 Klebsiella pneumoniae IS39 "Klebsiella pneumoniae IS39 is a Gram-negative, rod-shaped bacterium that typically forms arrangements in chains, pairs, or singles. This microbe is nonsporulating and is classified as a chemoheterotroph, relying on organic compounds for energy. It thrives optimally at a temperature of 37.0°C, which coincides with the average human body temperature, suggesting a strong association with host environments. ↵↵Klebsiella pneumoniae IS39 is a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which enhances its adaptability within various host-associated habitats. The presence of this microbe in host organisms may play a role in the complex interactions of the microbiome, potentially influencing metabolic processes and nutrient cycling within the host. ↵↵The ecological implications of Klebsiella pneumoniae IS39's traits suggest that it may occupy niches where it can effectively utilize host-derived substrates, ultimately contributing to the microbial diversity and function in host-associated environments. Its facultative anaerobic nature may also facilitate its persistence in varying oxygen availability, allowing it to colonize diverse ecological niches within the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1432561 CBWU000000000.1 Bac0011329 Xenorhabdus cabanillasii JM26 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus cabanillasii 1427517 CBXE000000000.1 Bac0011330 Xenorhabdus szentirmaii DSM 16338 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus szentirmaii 1427518 CBXF000000000.1 Bac0011331 Bacteroides xylanisolvens SD CC 1b "Bacteroides xylanisolvens SD CC 1b is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in oxygen-depleted environments. This species is notable for its metabolic capabilities, particularly its capacity to degrade xylose, a pentose sugar commonly found in plant biomass. As a member of the Bacteroides genus, B. xylanisolvens plays a significant role in the breakdown of complex carbohydrates in the gut microbiota, contributing to the fermentation processes that produce short-chain fatty acids beneficial for host health.↵↵The anaerobic nature of B. xylanisolvens suggests that it is well-adapted to the intestinal environment, where oxygen levels are low, allowing it to coexist with other anaerobic organisms. The metabolic pathways of B. xylanisolvens may also have implications for the development of biotechnological applications, particularly in the context of biomass conversion and sustainable biofuel production, where the efficient degradation of plant polysaccharides is essential.↵↵Overall, Bacteroides xylanisolvens SD CC 1b exemplifies the intricate interactions within the microbiome, showcasing how specific anaerobic bacteria can contribute to the overall metabolic landscape and enhance the utilization of dietary fibers in the gastrointestinal tract. This capacity for xylose degradation highlights its potential importance in supporting host nutrition and maintaining gut homeostasis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 702447 CBXG000000000.1 Bac0011332 Pyrinomonas methylaliphatogenes K22T Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae Pyrinomonas Pyrinomonas methylaliphatogenes 454194 CBXV000000000.1 Bac0011333 Richelia intracellularis Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Richelia Richelia intracellularis 1164990 CBZS000000000.1 Bac0011334 Devosia sp. DBB001 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. DBB001 1380412 CCAO000000000.1 Bac0011335 Photobacterium kishitanii strain ANT-2200 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium kishitanii 318456 CCAR000000000.2 Bac0011336 Mycobacterium vulneris "Mycobacterium vulneris is a rod-shaped, non-spore-forming bacterium that thrives in microaerophilic conditions, with an optimal growth temperature of 32.0°C. This organism is primarily found in environmental habitats, suggesting its adaptation to specific ecological niches where oxygen levels are lower than those typically found in the atmosphere. The microaerophilic requirement indicates that M. vulneris may be involved in unique interactions with its environment, potentially participating in biogeochemical cycles or influencing microbial community dynamics in its habitat.↵↵The absence of sporulation suggests that M. vulneris may rely on other survival strategies to withstand environmental stresses, which could include biofilm formation or symbiotic relationships with other microorganisms. Understanding the specific ecological roles and adaptations of M. vulneris within its environment could provide insights into the broader implications of mycobacterial diversity and resilience in varying ecological contexts. Further research into its physiological characteristics and interactions could illuminate its potential contributions to environmental microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium vulneris rod microaerophile 32 mesophilic environment non-spore-forming 547163 CCBG000000000.1 Bac0011337 Novosphingobium sp. KN65.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. KN65.2 1478134 CCBH000000000.1 Bac0011338 Staphylococcus schweitzeri Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus schweitzeri 1654388 CCEH00000000.1 Bac0011339 Polaromonas sp. CG9_12 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. CG9_12 1504672 CCJP00000000.1 Bac0011340 Vibrio coralliirubri strain J2-29 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio coralliirubri 1516159 CCKH00000000.1 Bac0011341 Mesorhizobium sp. ORS3359 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. ORS 3359 408184 CCNC00000000.1 Bac0011342 Bacillus thermoamylovorans "Bacillus thermoamylovorans is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This organism is notable for its ability to thrive in high-temperature environments, which suggests a potential role in the degradation of organic materials under thermophilic conditions. The facultative anaerobic nature of B. thermoamylovorans indicates its versatility in utilizing both aerobic respiration and fermentation processes, depending on the availability of oxygen. This adaptability may confer a competitive advantage in diverse ecological niches, particularly in environments where oxygen levels fluctuate.↵↵The rod shape of B. thermoamylovorans is typical of the Bacillus genus, which is often associated with the production of endospores, although the traits regarding sporulation were not provided. The capacity to engage in both aerobic and anaerobic metabolic pathways implies that B. thermoamylovorans can effectively utilize a variety of substrates, potentially including starch or other carbohydrates. This metabolic flexibility may play a significant role in its ecological interactions, particularly in environments rich in organic matter that require a rapid response to changes in oxygen availability.↵↵Overall, Bacillus thermoamylovorans exemplifies the adaptability of thermophilic microbes, suggesting potential applications in biotechnology, particularly in processes that require high-temperature conditions and diverse metabolic capabilities. Its presence in thermophilic ecosystems may contribute to nutrient cycling and the breakdown of complex organic materials, thereby influencing the overall dynamics of such environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus thermoamylovorans Positive Rod Facultative anaerobe 35841 CCRF00000000.1 Bac0011343 Neorhizobium galegae bv. orientalis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium galegae 323655 CCRM00000000.1 Bac0011344 Xenorhabdus nematophila str. Websteri "Xenorhabdus nematophila strain Websteri is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and is nonsporulating. This microbe is primarily associated with hosts, indicating a symbiotic or parasitic relationship with certain nematodes, particularly within the genus Steinernema. ↵↵As a member of the family Enterobacteriaceae, X. nematophila str. Websteri plays a crucial role in the lifecycle of its nematode hosts by providing essential nutrients and facilitating the nematodes' ability to infect and control insect populations. The bacterium is known to produce a variety of secondary metabolites that may contribute to its ecological interactions, although specific metabolic pathways and the full extent of its biochemical capabilities remain to be fully elucidated.↵↵In summary, the unique association of X. nematophila str. Websteri with nematodes not only highlights its role in the insect biocontrol process but also underscores the complexity of host-microbe interactions in soil ecosystems. Understanding these relationships may provide insights into the development of biopesticides and sustainable agricultural practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus nematophila Negative Rod No 1 2 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1437826 CCWW00000000.1 Bac0011345 Bacillus sp. B-jedd Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. B-jedd 1476857 CCXR00000000.1 Bac0011346 Hyphomicrobium sp. GJ21 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium sp. GJ21 113574 CDHO00000000.1 Bac0011347 Capnocytophaga canimorsus "Capnocytophaga canimorsus is a Gram-negative, rod-shaped bacterium that exhibits microaerophilic growth characteristics and is classified as a chemoheterotroph. This organism thrives optimally at a temperature of 37.0°C, which is consistent with the human body temperature, suggesting a potential association with warm-blooded hosts. Notably, Capnocytophaga canimorsus does not form spores, indicating a reliance on stable conditions for survival and reproduction.↵↵This microbe is typically found in diverse habitats, which may include oral cavities of mammals, particularly in dogs and cats. Its presence in these environments may reflect its adaptation to the microbiota associated with these animals. The bacterium's metabolic versatility as a chemoheterotroph allows it to utilize organic carbon sources, potentially enabling it to compete effectively within various ecological niches.↵↵The ecological role of Capnocytophaga canimorsus in mammalian microbiomes, especially in relation to oral health and disease, remains an area of ongoing research. Understanding its interactions within these ecosystems could provide insights into the complex dynamics of host-associated microbial communities and their overall impact on host health." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga canimorsus Negative Rod No 1 Microaerophilic 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 28188 CDOE00000000.1 Bac0011348 [Clostridium] sordellii "[Clostridium] sordellii is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and is classified as a chemoheterotroph, relying on organic compounds for energy. This anaerobic microbe is commonly found in soil environments, where it plays a role in the decomposition of organic matter. The ability to form spores allows [C. sordellii] to survive in harsh conditions, contributing to its persistence in soil habitats.↵↵As a member of the Clostridia class, [C. sordellii] is known for its anaerobic metabolism, which is essential for its survival in oxygen-deprived environments. The ecological role of [C. sordellii] in soil ecosystems highlights its potential contribution to nutrient cycling, although its specific interactions with other soil microorganisms and plants remain to be fully elucidated. Overall, the presence of [C. sordellii] in soil suggests its involvement in the complex dynamics of microbial communities, particularly in relation to organic matter breakdown and nutrient availability." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium sordellii Positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Soil Sporulating 1505 CEKZ00000000.1 Bac0011349 Syntrophomonas zehnderi OL-4 "Syntrophomonas zehnderi OL-4 is a Gram-negative, rod-shaped bacterium known for its anaerobic metabolism and ability to form spores. This organism thrives optimally at a temperature of 32.0°C, suggesting a preference for moderate thermal environments. Its spore-forming capability indicates a resilience to unfavorable conditions, potentially allowing it to survive in various anaerobic habitats.↵↵The ability of S. zehnderi OL-4 to perform anaerobic processes may play a significant role in the degradation of organic matter, contributing to biogeochemical cycling in its environment. The unique combination of traits, including its morphology and metabolic requirements, positions S. zehnderi OL-4 as a notable player in anaerobic ecosystems, where it could be involved in syntrophic interactions with other microorganisms to facilitate the breakdown of complex substrates. This characteristic highlights the importance of microbial consortia in nutrient cycling and energy flow within anaerobic environments." Bacillati Bacillota Clostridia Eubacteriales Syntrophomonadaceae Syntrophomonas Syntrophomonas zehnderi Gram-negative / Gram-positive rod anaerobic 32 mesophilic spore-forming 690567 CGIH00000000.1 Bac0011350 Planococcus plakortidis strain IMP5.19 "Planococcus plakortidis strain IMP5.19 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolic characteristics. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy. While specific details regarding its ecological niche remain unspecified, the classification of this microbe under the genus Planococcus suggests a potential adaptability to diverse habitats, as many members of this genus are known to thrive in various environmental conditions.↵↵The aerobic nature of Planococcus plakortidis strain IMP5.19 implies that it requires oxygen for growth and energy production, which can influence its distribution in natural environments. The ability to function as a heterotroph may enable this strain to occupy ecological roles in nutrient cycling, particularly in environments rich in organic materials. This characteristic positions it as a potential contributor to the degradation of complex organic substrates, reflecting its adaptability and ecological significance.↵↵Overall, understanding the traits of Planococcus plakortidis strain IMP5.19 enhances knowledge of microbial diversity and metabolic capabilities within its habitat, potentially offering insights into its role in maintaining ecosystem balance and facilitating organic matter decomposition in various environments." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CM132416 Bac0011351 Streptococcus pseudopneumoniae strain SMRU2944 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 257758 CMGD00000000.1 Bac0011352 Streptococcus pseudopneumoniae strain SMRU2248 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 257758 CMJT00000000.1 Bac0011353 Clostridium botulinum A str. Hall "Clostridium botulinum produces botulinum neurotoxin, one of deadliest toxins known. It inhibits acetylcholine release in neuromuscular junctions, causing paralysis by inhibiting muscle contraction. In most cases the affected person dies of asphyxiation or heart failure. Strains of C. botulinum are physiologically heterogeneous, and four distinct phenotypic groups (I to IV) are recognized. These four metabolically distinct groups do not, however, necessarily correlate with the serological specificities of the botulinum neurotoxin produced, which are classified into 7 serotypes, A-F. The type A toxin is used in minute doses to treat both painful muscle spasms and as a cosmetic treatment to temporarily remove frown lines between eyebrows. Strain Hall, ATCC 3502, is a representative of the Group I (proteolytic) botulinum toxin producing bacteria. Group I strains produce one or two toxins of type A, B or F; strain Hall produces type A1 neurotoxin. Food-borne, infant and wound botulism can all be caused by Group I strains. Strain Hall, the most widely studied of the C.botulinum strains, has been found to have an active chitinolytic system, enabling it to colonize environments where chitin-containing organism such as fungi, insects and crustaceans are abundant. Additionally it produces several extracellular proteases, presumably helping it to soften and destroy rotting or decaying tissues to support its saprophytic lifestyle. Two representatives of this strain have been sequenced, one of which contains a plasmid that encodes a bacteriocin boticin-like synthetic and transport system which may enable the bacteria to compete against other microbes. (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Hall Negative Rod Yes 1 2 Aerobe 37 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Sporulating Yes 441771 cp000727 Bac0011354 Clostridium botulinum A2 str. Kyoto "Clostridium botulinum produces botulinum neurotoxin, one of deadliest toxins known. It inhibits acetylcholine release in neuromuscular junctions, causing paralysis by inhibiting muscle contraction. In most cases the affected person dies of asphyxiation or heart failure. Strains of C. botulinum are physiologically heterogeneous, and four distinct phenotypic groups (I to IV) are recognized. These four metabolically distinct groups do not, however, necessarily correlate with the serological specificities of the botulinum neurotoxin produced, which are classified into 7 serotypes, A-F. The type A toxin is used in minute doses to treat both painful muscle spasms and as a cosmetic treatment to temporarily remove frown lines between eyebrows. Strain Hall, ATCC 3502, is a representative of the Group I (proteolytic) botulinum toxin producing bacteria. Group I strains produce one or two toxins of type A, B or F; strain Hall produces type A1 neurotoxin. Food-borne, infant and wound botulism can all be caused by Group I strains. Strain Hall, the most widely studied of the C.botulinum strains, has been found to have an active chitinolytic system, enabling it to colonize environments where chitin-containing organism such as fungi, insects and crustaceans are abundant. Additionally it produces several extracellular proteases, presumably helping it to soften and destroy rotting or decaying tissues to support its saprophytic lifestyle. Two representatives of this strain have been sequenced, one of which contains a plasmid that encodes a bacteriocin boticin-like synthetic and transport system which may enable the bacteria to compete against other microbes. (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Kyoto Negative Rod Yes 1 2 Aerobe 37 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Sporulating Yes 536232 CP001581.1 Bac0011355 Escherichia coli 'BL21-Gold(DE3)pLysS AG' "Escherichia coli is a Gram-negative straight rod, which either uses peritrichous flagella for mobility or is nonmotile. It is a facultatively anaerobic chemoorganotroph capable of both respiratory and fermentative metabolism. E.coli serves a useful function in the body by suppressing the growth of harmful bacterial species and by synthesising appreciable amounts of vitamins. It is an important component of the biosphere. It colonizes the lower gut of animals and survives when released to the natural environment, allowing widespread dissemination to new hosts. Pathogenic E.coli strains are responsible for infection of the enteric, urinary, pulmonary and nervous systems. Comparison of 20 E.coli/Shigella strains shows the core genome to be about 2000 genes while the pan-genome has over 18,000 genes. There are multiple, striking integration hotspots that are conserved across the genomes, corresponding to regions of abundant and parallel insertions and deletions of genetic material.This strain is an avian pathogenic E.coli (APEC), and was isolated from the lung of a chicken with colisepticemia. E.coli APEC O1 is an O1:K1:H7 strain belonging to phylogroup B2 and was chosen for sequencing as it possesses traits characteristics of E.coli which cause disease outside of the intestinal tract i.e. APEC and UPEC (uropathogenic E.coli) strains. It is highly virulent in chickens. It is closely related to E.coli UTI89, a UPEC strain of E.coli (ECOUT). It contains 4 plasmids, pAPEC-O1-ColBM, pAPEC-O1-R, pAPEC-O1-Cryptic1 and pAPEC-O1-Cryptic2. Plasmid pAPEC-O1-ColBM is an F-type plasmid that produces colicins B and M and encodes a putative virulence cluster. Plasmid pAPEC-O1-R encodes resistance to eight antimicrobial agents. The cryptic plasmids are somewhat related to Yersinia-type plasmids and do not confer any apparent phenotypes. (HAMAP: ECOK1)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli BL21(DE3) Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 866768 CP001665.1 Bac0011356 Lactobacillus plantarum subsp. plantarum ST-III "Lactobacilli produce lactic acid and are used for many different things, including yogurt production and the maintenance of healthy intestinal microflora. Lactobacilli are commonly associated with the gastrointestinal tract of humans. The genome of the Lactobacillus plantarum has been sequenced and the genomes of several other Lactobacilli are underway. The goal of researchers is to better understand the roles, capabilities, and interactions of Lactobacilli.The genome of Lactobacillus plantarum has been sequenced. The genome is 3,308,274 bp long with 3,052 open-reading frames, and a G+C content of 44.5%. L. plantarum occupies many different niches in the environment including the human gastrointestinal tract. L. plantarum is very ecologically flexible as is reflected in the fact that it has one of the largest genomes of any of the lactic acid bacteria.The genome of Lactobacillus bulgaricus, which is currently in progress, is about 2.3 Mbp long with a G+C content of 50%. L. bulgaricus is one of the two bacteria required for the production of fermented milk and yogurt. The complete sequence of this genome will provide better understanding and control of this bacterium in the fermentation process.Lactobacilli are rod-shaped, Gram-positive, fermentative, organotrophs. They are usually straight, although they can form spiral or coccobacillary forms under certain conditions. They are often found in pairs or chains of varying length. Lactobacilli are classified as lactic acid bacteria, and derive almost all of their energy from the conversion of glucose to lactate during homolactic fermentation. In this process 85-90% of the sugar utilized is converted to lactic acid. They generate ATP by nonoxidative substrate-level phosphorylation.Lactobacilli are commonly associated with plant herbage. They have a generation time ranging from 25 minutes to several hundred minutes, and grow optimally between the temperatures of 30 and 40 degrees Celsius, although thermophilic strains can be comfortable at temperatures as high as 45 degrees Celsius. They are also commonly associated with the gastrointestinal tract of animals and humans. As natural GI microflora they are believed to perform several beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of healthy intestinal microflora. Lactobacillus gasseri appears to be the main species of lactobacilli that inhabits the human gastrointestinal tract. (From http://microbewiki.kenyon.edu/index.php/Lactobacillus) (MicrobeWiki: Lactobacillus)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum ST-III Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Homo sapiens Chains No 889932 CP002222.1 Bac0011357 Escherichia coli BW25113 "Escherichia coli BW25113 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. Characterized by its facultative anaerobic metabolism, this strain can thrive in both aerobic and anaerobic environments, making it versatile in various ecological niches. E. coli BW25113 has an optimal growth temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli BW25113 is often used as a model organism in molecular biology and genetics. Its ability to survive in diverse conditions allows researchers to study various metabolic pathways and genetic regulations under different environmental stresses. Additionally, the strain serves as a platform for synthetic biology applications, where it is utilized for the production of proteins and other metabolites.↵↵The host-associated habitat of E. coli BW25113 implies that it plays a role in the microbial community structure within the intestines of mammals. Understanding its interactions within these communities can provide insights into gut health and the complex dynamics of host-microbe relationships. Furthermore, the ability of E. coli to adapt to anaerobic conditions highlights its potential role in biogeochemical cycles, particularly in nutrient recycling within the host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 679895 CP009273.1 Bac0011358 Borreliella chilensis strain VA1 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella [Borrelia] chilensis 1245910 CP009910.1 Bac0011359 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 "Vibrio natriegens NBRC 15636, also designated as ATCC 14048 and DSM 759, is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is classified as a heterotroph, deriving its energy from organic compounds, and exhibits aerobic metabolism, requiring oxygen for optimal growth. Vibrio natriegens is known to inhabit a variety of environments, suggesting its adaptable nature and potential utility in diverse ecological contexts.↵↵As a member of the Vibrio genus, this microbe is distinguished by its rapid growth rate, which has garnered interest for biotechnological applications. Its ability to thrive in multiple habitats may be linked to its metabolic versatility, enabling it to exploit different organic substrates. Furthermore, the aerobic requirement highlights its role in environments where oxygen is readily available, potentially influencing nutrient cycling and interactions with other microbial communities.↵↵The ecological significance of Vibrio natriegens may extend to its function in marine ecosystems, where it could play a role in the degradation of organic matter and nutrient recycling. This adaptability and rapid growth rate position Vibrio natriegens as a promising candidate for studies in microbial physiology and biotechnology, particularly in applications that leverage its metabolic capabilities in the presence of oxygen." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio natriegens Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 1219067 CP009978 Bac0011360 Mycobacterium tuberculosis variant bovis BCG strain 26 "Mycobacterium tuberculosis variant bovis BCG strain 26 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This strain, a derivative of the Mycobacterium bovis species, is primarily associated with host organisms, indicating a strong relationship with mammalian hosts. M. bovis BCG strain 26 is a chemoorganotroph, utilizing organic compounds as its energy source, which is consistent with its adaptation to a host-associated habitat. ↵↵The optimal growth temperature for this strain is approximately 37.0°C, aligning with the average body temperature of warm-blooded animals, particularly humans. Furthermore, this bacterium is strictly aerobic, requiring oxygen for its metabolic processes. ↵↵The BCG strain is widely recognized for its use in vaccination against tuberculosis, demonstrating its significance in public health. Despite its attenuation compared to the virulent strains of Mycobacterium tuberculosis, its physiological traits offer insights into its survival strategies within host environments. The ability to thrive in aerobic conditions while being host-associated suggests an evolutionary adaptation that allows it to exploit the nutrient-rich milieu of host tissues, providing a unique ecological perspective on its role in the host-pathogen interaction framework." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1773 CP010331.1 Bac0011361 Lactobacillus farciminis strain CNCM-I-3699-S. "Lactobacillus farciminis strain CNCM-I-3699-S is a rod-shaped, nonsporulating bacterium that optimally grows at a temperature of 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, indicating its potential role in various metabolic processes within its habitat. L. farciminis strain CNCM-I-3699-S exhibits facultative anaerobic characteristics, allowing it to thrive in both aerobic and anaerobic environments, which enhances its adaptability to diverse ecological niches.↵↵This strain has been isolated from multiple habitats, suggesting a versatile lifestyle and the ability to colonize different environments, possibly contributing to its ecological resilience. The facultative anaerobic nature of L. farciminis strain CNCM-I-3699-S may facilitate its survival in fluctuating oxygen levels, a common scenario in many natural and artificial environments.↵↵Notably, the capacity of L. farciminis to utilize a variety of organic substrates and to adapt to different oxygen conditions positions it as a potential player in microbial communities, particularly in fermentation processes and food production systems. This adaptability underscores the importance of Lactobacillus species in maintaining ecological balance and their potential utility in biotechnological applications, such as probiotic formulations and food preservation strategies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus farciminis Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1612 CP011952.1 Bac0011362 Lactobacillus farciminis strain CNCM-I-3699-S "Lactobacillus farciminis strain CNCM-I-3699-S is a nonsporulating, rod-shaped bacterium that exhibits facultative anaerobic metabolism, indicating its ability to thrive in both aerobic and anaerobic environments. This strain optimally grows at a temperature of 37.0°C, which is typical for many mesophilic microorganisms. As a chemoheterotroph, L. farciminis strain CNCM-I-3699-S derives its energy from organic compounds, reflecting its adaptability to various nutrient sources in diverse habitats.↵↵The ability of this strain to inhabit multiple environments suggests a versatile ecological role, potentially contributing to the fermentation processes in various ecosystems. The facultative anaerobic characteristic may enable L. farciminis strain CNCM-I-3699-S to occupy niches where oxygen availability fluctuates, allowing it to thrive in both oxygen-rich and oxygen-poor settings. This adaptability underscores the potential significance of this strain in food production and probiotic applications, where it may influence fermentation dynamics and gut health.↵↵Overall, the traits of Lactobacillus farciminis strain CNCM-I-3699-S illustrate a microbiological profile that is well-suited for diverse ecological contexts, emphasizing its potential relevance in both natural and industrial processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus farciminis Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1612 CP011953.1 Bac0011363 Bacteroidetes bacterium UKL13-3 Pseudomonadati Bacteroidota Bacteroidetes bacterium UKL13-3 1690483 CP012155.1 Bac0011364 Pyrobaculum sp. WP30 Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum sp. WP30 1227555 CP012158.1 Bac0011365 Lactobacillus farciminis strain CNCM-I-3699-R "Lactobacillus farciminis strain CNCM-I-3699-R is a rod-shaped bacterium characterized by its nonsporulating nature and facultative anaerobic metabolism, allowing it to thrive in various environments. This strain is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon. Its optimal growth temperature is 37.0°C, suggesting a preference for conditions similar to those found in warm-blooded animals, which may reflect its adaptability to diverse habitats, including those associated with the gastrointestinal tract.↵↵The facultative anaerobic capability of L. farciminis strain CNCM-I-3699-R enables it to grow in both oxygen-rich and oxygen-poor environments, enhancing its ecological versatility. This adaptability may contribute to its potential roles in fermentation processes and its application in food production or probiotic formulations. ↵↵As this strain is associated with multiple habitats, its presence may influence microbial community dynamics and nutrient cycling within those ecosystems. The ability to thrive at 37°C and utilize a range of organic substrates positions L. farciminis strain CNCM-I-3699-R as a potentially significant player in the microbiomes of various hosts, highlighting its importance in both ecological and biotechnological contexts. Further investigation into its specific interactions within these environments could provide valuable insights into its functional contributions to microbial communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus farciminis Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1612 CP012178.1 Bac0011366 Candidatus Tenderia electrophaga Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Tenderiales Candidatus Tenderiaceae Candidatus Tenderia Candidatus Tenderia electrophaga 1748243 CP013099.1 Bac0011367 Enterococcus silesiacus strain LMG 23085 "Enterococcus silesiacus strain LMG 23085 is a Gram-positive, ovoid-shaped bacterium that demonstrates spore-forming capabilities, with an optimal growth temperature of 25.0°C. This strain belongs to the genus Enterococcus, which is known for its resilience and adaptability in various environments. The Gram-positive nature of E. silesiacus indicates a thick peptidoglycan layer in its cell wall, a characteristic that is often associated with a robust resistance to environmental stressors. ↵↵The ovoid morphology of this strain suggests a possible adaptation for survival in diverse habitats, as such shapes can facilitate efficient nutrient uptake and resilience against predation. The ability to form spores is particularly noteworthy; it enables the bacterium to endure unfavorable conditions such as nutrient limitation or desiccation, thus enhancing its survival prospects in fluctuating environments. ↵↵The optimal growth at 25.0°C indicates a preference for moderate temperatures, which may reflect its ecological niche in environments that experience temperate climatic conditions. This temperature adaptability could facilitate its role in various ecosystems, potentially contributing to nutrient cycling processes. Overall, the traits of Enterococcus silesiacus strain LMG 23085 highlight its potential ecological significance, particularly in environments where resilience and adaptability to moderate temperatures are crucial for survival and interaction within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus silesiacus Gram-positive ovoid non-motile 25 mesophilic spore-forming 332949 CP013614.1 Bac0011368 Rhizobiales bacterium NRL2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium NRL2 1862950 CP016093.1 Bac0011369 Alteromonas sp. Mex14 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. Mex14 1917157 CP018023.1 Bac0011370 Enterococcus faecium strain WEFA23 "Enterococcus faecium strain WEFA23 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolism as a heterotroph. This strain is notable for its versatility in energy acquisition, utilizing organic compounds from a variety of habitats, which may include diverse environments such as soil, water, and various biological substrates. ↵↵The aerobic nature of WEFA23 indicates its reliance on oxygen for growth and energy production, a trait that is crucial for its survival in oxygen-rich environments. The organism's ability to thrive in multiple habitats suggests a degree of ecological adaptability, potentially allowing it to occupy niches that are less conducive to other microbial species. ↵↵As a member of the Enterococcus genus, strain WEFA23 may contribute to biogeochemical cycles in its environments, especially in the degradation of organic materials. Its heterotrophic lifestyle may also indicate a role in nutrient recycling processes, which can be vital for ecosystem functioning. Understanding the adaptations and ecological roles of Enterococcus faecium strain WEFA23 can provide insights into the dynamics of microbial communities in various habitats and the functioning of ecosystems where this strain is present." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP021885 Bac0011371 Lactiplantibacillus plantarum strain LLY-606 "Lactiplantibacillus plantarum strain LLY-606 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolism. As a heterotroph, it derives energy from organic compounds, which allows it to thrive in various habitats. The strain's versatility in utilizing different energy sources contributes to its adaptability in diverse ecological niches.↵↵Lactiplantibacillus plantarum strains are known for their presence in fermented foods and the gastrointestinal tracts of humans and animals, suggesting a significant role in food preservation and potential health benefits. The ability of strain LLY-606 to survive in multiple environments underscores its ecological resilience and adaptability, making it a valuable organism for biotechnological applications, particularly in the development of probiotics and functional foods. This adaptability may also facilitate its use in the fermentation processes of various substrates, potentially enhancing the nutritional profile and safety of fermented products." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP023306 Bac0011372 Lactiplantibacillus plantarum strain WLPL04 "Lactiplantibacillus plantarum strain WLPL04 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it relies on organic compounds for energy, which suggests a versatile metabolic capacity that allows it to thrive in a variety of environments. This strain is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes.↵↵The habitat of Lactiplantibacillus plantarum strain WLPL04 is notably diverse, which may contribute to its adaptability and potential applications in fermentation processes and food preservation. The ability to survive in multiple habitats underscores the strain's ecological versatility and implies its possible roles in various microbiomes, including those associated with fermented foods, the gastrointestinal tracts of animals, and plant surfaces.↵↵Understanding the specific traits of Lactiplantibacillus plantarum strain WLPL04 can provide insights into its potential contributions to microbial communities and its use in biotechnological applications. Its heterotrophic nature and aerobic requirement may influence its interactions with other microbial species, which could be important for maintaining microbial balance in its environments. Further investigation into its ecological roles could reveal additional benefits that this strain may confer in both natural and industrial settings." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP023771 Bac0011373 Bacillus wiedmannii bv. thuringiensis strain FCC41 "Bacillus wiedmannii bv. thuringiensis strain FCC41 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain thrives optimally at a temperature of 25.0°C and requires oxygen for its metabolic processes, classifying it as an aerobic organism. Its presence in multiple habitats suggests a versatile adaptability to various environmental conditions, which may include soil, water, and plant-associated niches.↵↵The morphological characteristics of B. wiedmannii strain FCC41, particularly its rod shape and chain arrangement, are indicative of its classification within the Bacillus genus, known for its diverse ecological roles. While specific pathogenicity and detailed ecological functions of this strain have not been elucidated, its aerobic nature points to potential interactions with other microorganisms in oxygen-rich environments.↵↵The ability of B. wiedmannii bv. thuringiensis strain FCC41 to adapt to multiple habitats may facilitate its involvement in nutrient cycling and soil health, contributing to the ecological balance within its environments. This adaptability underscores the importance of studying such strains for their potential applications in agriculture and bioremediation, where beneficial microbial activity is essential for sustainable practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 CP024687.1 Bac0011374 Pasteurellaceae bacterium 12591 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium 12591 2093223 CP026860.1 Bac0011375 Vibrio cholerae strain A1552 "Vibrio cholerae strain A1552 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is around 20.0°C, suggesting a preference for cooler habitats. As a heterotroph, V. cholerae strain A1552 utilizes organic compounds for energy, which enables it to inhabit diverse ecological niches.↵↵The ability of this strain to adapt to varying oxygen levels and its broad habitat range highlight its ecological versatility. This adaptability may facilitate its survival in fluctuating environmental conditions, such as those found in estuarine and coastal waters where temperatures can vary. Understanding the physiological traits of V. cholerae strain A1552 could provide insights into its potential roles in microbial communities and biogeochemical cycles in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 CP028894.1 Bac0011376 Candidatus Moanabacter tarae Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Candidatus Moanibacter Candidatus Moanibacter tarae 2200854 CP029803.1 Bac0011377 Stenotrophomonas rhizophila strain GA1 "Stenotrophomonas rhizophila strain GA1 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This strain has been identified in a variety of habitats, suggesting a versatile ecological role. As an anaerobe, S. rhizophila strain GA1 is capable of utilizing organic compounds for energy in the absence of oxygen, which may allow it to occupy niche environments where oxygen is limited or absent.↵↵The ability of S. rhizophila strain GA1 to adapt to multiple habitats highlights its potential significance in diverse ecosystems, including soil and aquatic environments where organic matter is abundant. Its metabolic flexibility may contribute to the degradation of organic substrates, playing a role in nutrient cycling and influencing microbial community dynamics. Further investigation into the specific organic compounds utilized by this strain could elucidate its functional contributions to its native habitats and its interactions with other microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas rhizophila Negative Rod Yes 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 216778 CP031729.1 Bac0011378 Candidatus Bipolaricaulis sibiricus Candidatus Bipolaricaulota Bipolaricaulia (SeqCode) Bipolaricaulales (SeqCode) Candidatus Bipolaricaulaceae Candidatus Bipolaricaulis Candidatus Bipolaricaulis sibiricus 2501609 CP034928.1 Bac0011379 Aeromonas caviae strain R25-2 "Aeromonas caviae strain R25-2 is a Gram-negative bacterium that thrives in diverse aquatic environments, as well as in compost and hospital settings. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels while utilizing organic material as a carbon source. Such metabolic versatility is advantageous in fluctuating habitats, where the availability of oxygen may change.↵↵The presence of A. caviae in compost piles indicates its potential role in the decomposition of organic matter, contributing to nutrient cycling within these environments. Its ability to inhabit both natural and anthropogenic settings, such as hospitals, suggests that it may interact with a variety of microbial communities and substrates. The adaptability of A. caviae R25-2 to different ecological niches highlights its importance in the microbiome of aquatic systems and compost environments.↵↵Further study of this strain could reveal insights into its specific interactions with other microorganisms and its potential contributions to biogeochemical processes. Understanding the ecological role of A. caviae R25-2 may enhance our knowledge of microbial dynamics in both natural and managed ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas caviae Negative Facultative anaerobe aquatic environments; compost; hospital; plant material compost pile 648 CP039630.1 Bac0011380 Acinetobacter baumannii strain ATCC 19606 "Acinetobacter baumannii strain ATCC 19606 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which is consistent with its heterotrophic nature. A. baumannii is primarily an aerobe, requiring oxygen for its metabolic processes, and it thrives at an optimal temperature of 37.0 °C, which corresponds to the typical human body temperature, suggesting its potential association with human environments.↵↵The habitat of A. baumannii is diverse, as it can be found in multiple environments, which may include clinical settings, where it is frequently isolated from various surfaces and biological samples. This versatility in habitat underscores its adaptability and potential for persistence in varied ecological niches.↵↵One unique ecological insight regarding A. baumannii is its capacity to survive in different environments, which may contribute to its role in nosocomial infections. This adaptability may be linked to its metabolic flexibility as a chemoheterotroph, allowing it to exploit a range of organic substrates in both natural and artificial environments. Understanding the traits and ecological versatility of A. baumannii strain ATCC 19606 is crucial for developing effective strategies to manage its prevalence, particularly in healthcare settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 CP045110.1 Bac0011381 Undibacterium piscinae strain S11R28 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Neoundibacterium Neoundibacterium piscinae 2495591 CP051152.1 Bac0011382 Lactiplantibacillus plantarum strain LP-F1 "Lactiplantibacillus plantarum strain LP-F1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates aerobic metabolism as a heterotroph. This strain is notable for its ability to thrive in various habitats, suggesting a broad ecological adaptability. ↵↵As a member of the Lactobacillus genus, Lactiplantibacillus plantarum strain LP-F1 is likely to play a role in fermentation processes, contributing to the production of lactic acid in diverse environments. The strain's aerobic nature indicates that it requires oxygen for growth, which may limit its ecological niches compared to strictly anaerobic bacteria, yet it remains versatile enough to occupy multiple environments. ↵↵The heterotrophic lifestyle of this strain implies that it relies on organic compounds from its surroundings for energy, which may facilitate its interaction with other microbial communities. Such interactions could enhance nutrient cycling in its habitats and contribute to the overall microbial diversity. ↵↵Understanding the traits of Lactiplantibacillus plantarum strain LP-F1 provides insight into its potential applications in food fermentation and preservation, as well as its role in maintaining the balance of microbial ecosystems in which it resides. Its adaptability highlights the importance of Lactobacillus species in various biotechnological applications and their contributions to human health through gut microbiota modulation." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP051192 Bac0011383 Bacillus velezensis strain GMEKP1 "Bacillus velezensis strain GMEKP1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic respiration, utilizing a heterotrophic energy source for growth. This strain has been identified in various habitats, indicating its adaptability to different environmental conditions. The aerobic nature of B. velezensis strain GMEKP1 suggests it requires oxygen for metabolic processes, which may influence its ecological roles and interactions within diverse microbial communities.↵↵The ability of B. velezensis strain GMEKP1 to thrive in multiple habitats could reflect a versatile metabolic capability, allowing it to exploit a range of organic substrates in different environments. This trait underscores its potential significance in nutrient cycling and its application in biotechnological contexts, such as biocontrol or bioremediation. Understanding the specific ecological niches occupied by this strain can provide insights into its functional roles within soil and plant-associated microbiomes, where it may contribute to plant health and soil fertility. Further research into the metabolic pathways and ecological interactions of B. velezensis strain GMEKP1 is warranted to elucidate its contributions to ecosystem dynamics and potential applications in sustainable agriculture." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP076450 Bac0011384 Streptomyces viridifaciens strain DSM 40239 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces viridifaciens 48665 CP090841.1 Bac0011385 Firmicutes bacterium ASF500 Bacillati Bacillota Firmicutes bacterium ASF500 1378168 CP097573.1 Bac0011386 Veillonella parvula strain PK1910 "Veillonella parvula strain PK1910 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolism as a heterotroph. This strain is capable of utilizing a variety of organic compounds as energy sources, reflecting its adaptability to diverse habitats. ↵↵The Gram-negative nature of V. parvula PK1910 suggests the presence of a complex outer membrane that may influence its interactions with other microbial communities, as well as its environmental resilience. Being rod-shaped and existing as individual cells may confer advantages in motility and nutrient acquisition in various substrates. ↵↵Given its classification as an aerobe, V. parvula strain PK1910 likely engages in aerobic respiration, which may enhance its metabolic efficiency compared to anaerobic organisms, especially in well-oxygenated environments. The strain's ability to thrive in multiple habitats indicates a versatile ecological role, potentially contributing to nutrient cycling in various ecosystems.↵↵This adaptability may also suggest that V. parvula PK1910 plays an important role in the microbial dynamics of its environment, particularly in contexts where organic matter is present and oxygen levels fluctuate. Understanding the metabolic capabilities and ecological functions of this strain could provide insights into its contributions to microbial community structure and function, particularly in environments where aerobic conditions prevail." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP138632 Bac0011387 Cereibacter sphaeroides f. sp. denitrificans strain IL106 "Cereibacter sphaeroides f. sp. denitrificans strain IL106 is a Gram-negative, rod-shaped bacterium that typically forms chains. This strain exhibits a versatile metabolism, utilizing photosynthesis as its primary energy source, which allows it to thrive in a variety of habitats. It is noteworthy that C. sphaeroides f. sp. denitrificans strain IL106 is capable of both aerobic and anaerobic respiration, enhancing its adaptability to fluctuating environmental oxygen levels.↵↵The optimal growth temperature for this strain is 25.0°C, indicating a mesophilic nature that may favor its proliferation in temperate environments. The ability to grow in multiple habitats suggests that this bacterium could occupy ecological niches ranging from aquatic to terrestrial ecosystems, where it may play a role in nutrient cycling, particularly in the nitrogen cycle due to its denitrifying capabilities.↵↵This strain's dual respiratory capabilities potentially allow it to contribute to both carbon fixation and the reduction of nitrates, highlighting its ecological significance in maintaining soil and water quality. Overall, C. sphaeroides f. sp. denitrificans strain IL106 exemplifies the adaptability of microbial life forms, reflecting their essential roles in diverse biogeochemical processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 1063 CP147413.1 Bac0011388 Lactiplantibacillus plantarum strain HOM2217 "Lactiplantibacillus plantarum strain HOM2217 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, allowing it to thrive in a variety of habitats. This strain is characterized as an aerobe, indicating its requirement for oxygen in metabolic processes. ↵↵The ability of L. plantarum strain HOM2217 to inhabit diverse environments suggests a degree of ecological versatility, which may be linked to its heterotrophic lifestyle. This adaptability can facilitate its role in various ecosystems, potentially contributing to nutrient cycling and organic matter decomposition. The strain's Gram-negative nature and single-cell arrangement further imply a specific structural and functional adaptation that may influence its interactions with other microorganisms and its ability to colonize different niches.↵↵The ecological significance of L. plantarum strain HOM2217 may extend to its potential involvement in fermentation processes, where its metabolic capabilities can play a role in the production of various metabolites. Understanding the traits of this strain provides insights into its potential applications in biotechnology and food science, particularly in the development of probiotic products or fermentation technologies." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP152360 Bac0011389 Bifidobacterium adolescentis strain JCM 19861 "Bifidobacterium adolescentis strain JCM 19861 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a heterotrophic aerobe. This strain is part of the diverse genus Bifidobacterium, which is known for its role in the gut microbiota of humans and other animals. B. adolescentis is typically found in a variety of habitats, which may include the intestines of mammals, where it can contribute to the fermentation of dietary fibers and the production of beneficial metabolites.↵↵As a heterotroph, B. adolescentis relies on organic compounds for energy, which it can derive from the complex carbohydrates present in its environment. This energy acquisition mechanism highlights the bacterium's potential role in nutrient cycling within its ecological niche. The aerobic nature of this strain suggests that it requires oxygen for its metabolic processes, which may influence its distribution in various habitats, particularly in environments where oxygen is available.↵↵Research on Bifidobacterium species, including strain JCM 19861, often emphasizes their probiotic potential and contributions to gut health. As such, the ecological role of this strain may extend beyond simple nutrient utilization to include interactions with other microbial communities and the host, potentially influencing overall health and disease resistance in its associated environments. Further studies could elucidate the specific functions and benefits provided by B. adolescentis strain JCM 19861 within its ecological context." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP156177 Bac0011390 Rhizobium ruizarguesonis strain Vaf-46 "Rhizobium ruizarguesonis strain Vaf-46 is a Gram-negative, rod-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This strain is nonsporulating, which indicates a reliance on more stable environmental conditions for survival and reproduction. As an aerobic organism, R. ruizarguesonis strain Vaf-46 requires oxygen for its metabolic processes, positioning it within environments such as soil where oxygen availability is generally sufficient.↵↵The habitat of R. ruizarguesonis strain Vaf-46 in soil suggests its potential role in nutrient cycling and soil health. While specific interactions with plant hosts or contributions to symbiotic relationships are not detailed, the presence of this bacterium in soil ecosystems may imply involvement in processes such as nitrogen fixation or organic matter decomposition, which are critical for soil fertility. Overall, the traits of R. ruizarguesonis strain Vaf-46 highlight its adaptation to aerobic soil environments, where it may play a significant role in enhancing the biochemical dynamics of its habitat. This emphasizes the importance of understanding the ecological roles of soil-dwelling microorganisms in maintaining ecosystem stability and productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium ruizarguesonis Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 2081791 CP171851.1 Bac0011391 Limosilactobacillus reuteri strain ZJ617 "Limosilactobacillus reuteri strain ZJ617 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it relies on organic compounds for energy, suggesting a versatile metabolic capability that allows it to thrive in various habitats. This strain is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes.↵↵The adaptability of Limosilactobacillus reuteri strain ZJ617 to multiple habitats may facilitate its role in diverse environments, potentially influencing local microbial communities and contributing to nutrient cycling. Its heterotrophic nature suggests that it may be involved in the degradation of organic materials, which could support the health of the ecosystems in which it resides. Understanding the specific interactions and contributions of Limosilactobacillus reuteri strain ZJ617 in its habitats may provide insights into its ecological significance and potential applications in biotechnology or microbiome research." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP179918 Bac0011392 Lactiplantibacillus plantarum strain ELPL27 "Lactiplantibacillus plantarum strain ELPL27 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy. It exhibits aerobic metabolism, requiring oxygen for optimal growth and metabolic function. ↵↵Lactiplantibacillus plantarum strains, including ELPL27, are commonly found in diverse habitats, suggesting a notable adaptability to various environmental conditions. The presence of this strain in multiple niches underscores its potential utility in various applications, including food fermentation processes and potentially in probiotic formulations.↵↵Moreover, the ability of Lactiplantibacillus plantarum strain ELPL27 to thrive in aerobic environments may contribute to its role in maintaining the balance of microbial communities, particularly in environments where oxygen levels fluctuate. This adaptability to various habitats and oxygen levels highlights the ecological versatility of this strain, positioning it as an important player in microbial ecology and biotechnology." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles CP192531 Bac0011393 Yersinia nurmii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia nurmii aerobic 685706 CPYD00000000.1 Bac0011394 Yersinia kristensenii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia kristensenii environment; food 28152 CPYI00000000.1 Bac0011395 Yersinia similis strain R819 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia similis 367190 CPZI00000000.1 Bac0011396 Yersinia massiliensis Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia massiliensis 419257 CQBH00000000.1 Bac0011397 Yersinia frederiksenii "Yersinia frederiksenii is a Gram-negative bacterium that has been identified in various environmental contexts and food sources. As a member of the Yersinia genus, it is closely related to other species within this group, although its specific ecological roles and behaviors are less well characterized. This microbe is notable for its presence in diverse habitats, suggesting a degree of adaptability that may allow it to thrive under varying environmental conditions.↵↵The characterization of Yersinia frederiksenii as a Gram-negative organism indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this bacterial group. The outer membrane often confers certain advantages such as resistance to some antibiotics and detergents, enhancing the organism's survival in different environments, including those associated with food. ↵↵Given its habitat, Yersinia frederiksenii might play a role in the microbial communities present in food processing environments or natural ecosystems, potentially influencing food safety and quality. Future studies could elucidate its interactions within these communities and the potential implications of its presence in food systems, particularly in relation to spoilage or the modulation of other microbial populations. This highlights the importance of understanding the ecological dynamics of Yersinia frederiksenii as part of broader microbiological research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia frederiksenii negative environment; food 29484 CQEN00000000.1 Bac0011398 Staphylococcus warneri strain type strain: N Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus warneri 1292 CRBR00000000.1 Bac0011399 Chlamydia trachomatis "Chlamydia trachomatis is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0 °C, which coincides with the human body temperature, reflecting its adaptation as a host-associated microbe. This obligate intracellular pathogen is primarily known for its role in human infections, where it resides within host cells and exhibits a unique developmental cycle. ↵↵The bacterium's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural composition contributes to its ability to evade certain host immune responses. Chlamydia trachomatis is dependent on its host for ATP and other essential nutrients, which further underscores its obligate nature. ↵↵Interestingly, the bacterium's restricted habitat within the host cell environment offers insights into its evolutionary adaptations. Chlamydia trachomatis has developed mechanisms to manipulate host cellular processes, allowing it to establish a niche conducive to its survival and replication. This intricate relationship highlights the complex interplay between host and pathogen, showcasing the necessity of understanding such dynamics for the development of effective therapeutic strategies. The reliance on host cells for survival underscores the broader implications of intracellular lifestyles in microbial ecology and evolution." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 813 CSTN00000000.1 Bac0011400 Mycobacterium abscessus "Mycobacterium abscessus is a rod-shaped bacterium primarily found in chloraminated water environments. This environmental niche suggests that M. abscessus has adapted to survive in water systems where chlorine is used for disinfection, indicating a potential resilience to chemical treatments commonly employed in public health measures. ↵↵As a member of the Mycobacterium genus, M. abscessus is characterized by its complex lipid-rich cell wall, which contributes to its environmental persistence and resistance to various antibiotics. The bacterium's ability to thrive in chloraminated water may reflect its broader ecological adaptability, possibly facilitating its transmission to humans and other hosts through contaminated water sources. ↵↵Understanding the habitat preferences of M. abscessus enhances our insight into its potential role in waterborne microbial communities and highlights the importance of monitoring water quality in systems where this organism may be present. The presence of M. abscessus in chloraminated water also raises questions about the effectiveness of standard water treatment processes and the implications for public health, especially in immunocompromised individuals who may be more susceptible to infections caused by environmental bacteria." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 CSWP00000000.1 Bac0011401 Mycobacterium lentiflavum Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium lentiflavum microaerophile 37 mesophilic 141349 CTEE00000000.1 Bac0011402 Paraliobacillus sp. PM-2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Paraliobacillus Paraliobacillus sp. PM-2 1462524 CTEI00000000.1 Bac0011403 Candidatus Cloacamonas acidaminovorans str. Evry provisional Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonadia Candidatus Cloacimonadales Candidatus Cloacimonadaceae Candidatus Cloacimonas Candidatus Cloacimonas acidaminovorans 456827 CU466930.1 Bac0011404 Nereida ignava "Nereida ignava is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 16.0°C. This microbe is characterized by its unique cellular morphology and specific growth conditions, which suggest adaptations to cooler aquatic habitats. The Gram-negative nature of N. ignava indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature common to many environmental bacteria that may confer advantages such as resistance to certain antimicrobial agents.↵↵The optimal growth temperature of 16.0°C suggests that N. ignava is well-suited for life in temperate or polar marine ecosystems, where temperatures often fluctuate within this range. Its aerobic requirement implies that this bacterium relies on oxygen for respiration, which could influence its distribution within stratified water columns where oxygen availability varies.↵↵Nereida ignava may play a role in the cycling of nutrients in its environment, particularly in low-temperature aquatic ecosystems. By participating in the degradation of organic matter, it could contribute to the overall health and stability of these ecosystems. Understanding the specific interactions and contributions of N. ignava within its habitat may provide insights into microbial dynamics in cold-water environments, highlighting the importance of such organisms in biogeochemical processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Nereida Nereida ignava Gram-negative rod non-motile aerobic 16 psychrotolerant 282199 CVQV00000000.1 Bac0011405 [Eubacterium] rectale strain T1-815 "[Eubacterium] rectale strain T1-815 is a Gram-positive, rod-shaped anaerobic bacterium that functions as a chemoheterotroph, utilizing organic compounds for energy. This strain is nonsporulating, suggesting a reliance on stable environmental conditions for survival. Its optimal growth temperature is approximately 37.0°C, which aligns with the physiological conditions found within the human gastrointestinal tract, a common habitat for members of the Eubacterium genus. ↵↵The anaerobic nature of strain T1-815 indicates that it thrives in low-oxygen environments, further supporting its presence in diverse habitats, particularly those associated with human and animal microbiomes. As a member of the gut microbiota, Eubacterium rectale may play a role in metabolic processes, including the fermentation of dietary fibers, contributing to the production of short-chain fatty acids, which are beneficial for host health. ↵↵The ecological significance of Eubacterium rectale strain T1-815 extends to its potential involvement in maintaining gut homeostasis and influencing the overall microbial community structure. Understanding the specific ecological roles of this strain may provide insights into its contributions to health and disease states within the host organism." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 CVRQ00000000.1 Bac0011406 Pseudomonas sp. 44 R 15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 44 R 15 1844105 CVTU00000000.1 Bac0011407 Labrenzia alba Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Roseibium Roseibium album aerobic 311410 CXTY00000000.1 Bac0011408 Burkholderia sp. STM 7296 strain STM7296 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia ribeironis 1247936 CYGX00000000.2 Bac0011409 Burkholderia sp. STM 7183 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia piptadeniae 1701573 CYGY00000000.2 Bac0011410 Gulbenkiania indica "Gulbenkiania indica is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This microbe is notable for its distinct morphological and physiological traits, which include a robust cellular structure typical of Gram-negative organisms. The rod shape of G. indica allows for efficient nutrient uptake and mobility in its environment, which is essential for its survival and ecological interactions.↵↵As an aerobic organism, G. indica relies on oxygen for its metabolic processes, indicating that it thrives in environments where oxygen is readily available. This requirement underscores its potential role in biogeochemical cycles, particularly in the decomposition of organic matter and nutrient cycling within its habitat. The aerobic nature of the microbe suggests that it may be involved in the oxidation of various substrates, contributing to the overall health and functionality of microbial communities.↵↵Recent studies suggest that G. indica may possess unique metabolic pathways that enable it to utilize specific carbon sources in its environment, although further research is needed to fully elucidate these capabilities. Understanding the ecological role of G. indica could provide insights into its potential applications in biotechnology, particularly in processes that require aerobic degradation of organic compounds. Overall, G. indica exemplifies the diverse adaptations of microorganisms to their aerobic habitats, highlighting the intricate relationships they maintain within their ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Gulbenkiania Gulbenkiania indica Gram-negative rod aerobic 375574 CYHA00000000.1 Bac0011411 Idiomarina woesei Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina woesei 1381080 CYHB00000000.1 Bac0011412 Thiomonas bhubaneswarensis "Thiomonas bhubaneswarensis is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and has been characterized as non-spore-forming. This species thrives optimally at a temperature of 32.0°C, suggesting its potential adaptation to moderate environmental conditions. The Gram-negative nature of T. bhubaneswarensis is indicative of its cell wall structure, which is composed of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural arrangement often confers resilience against certain environmental stresses and may influence its interactions within microbial communities.↵↵The aerobic requirement of T. bhubaneswarensis points to its reliance on oxygen for metabolic processes, which could play a significant role in its ecological niche, particularly in oxygen-rich environments. Understanding the metabolic pathways utilized by this organism may provide insights into its functional roles in biogeochemical cycles, especially in habitats where sulfur compounds are present, as many members of the Thiomonas genus are known for their involvement in sulfur oxidation.↵↵Overall, the specific traits of Thiomonas bhubaneswarensis contribute to its potential utility in bioremediation strategies or biotechnological applications, particularly in contexts where aerobic processing of sulfur compounds is advantageous. Further research could elucidate its ecological contributions and metabolic capabilities in diverse environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Thiomonas Thiomonas bhubaneswarensis Gram-negative rod aerobic 32 mesophilic non-spore-forming 339866 CYHF00000000.1 Bac0011413 Marinomonas fungiae Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas fungiae 1137284 CYHG00000000.1 Bac0011414 Tropicibacter multivorans Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tritonibacter Tritonibacter multivorans 928856 CYSD00000000.1 Bac0011415 Tropicibacter naphthalenivorans "Tropicibacter naphthalenivorans is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 37.0°C. This organism is notable for its capacity to degrade naphthalene, a polycyclic aromatic hydrocarbon, suggesting its potential role in bioremediation processes, particularly in environments contaminated with aromatic compounds. ↵↵The rod shape of T. naphthalenivorans may contribute to its motility and adaptability in various ecological niches, enhancing its ability to access and metabolize organic pollutants. The preference for aerobic conditions indicates that T. naphthalenivorans is likely to inhabit oxygen-rich environments, which may include soil and water bodies impacted by industrial activities.↵↵Given its specialized metabolic capabilities, T. naphthalenivorans could serve as a valuable model organism for studying microbial degradation pathways of aromatic hydrocarbons, potentially leading to insights into the development of bioremediation strategies. The ability of this bacterium to thrive at physiological temperatures also suggests that it may occupy niches where it competes with other microbial communities, highlighting its ecological significance in the degradation of environmental pollutants." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tropicibacter Tropicibacter naphthalenivorans Gram-negative rod aerobic 37 mesophilic 441103 CYSE00000000.1 Bac0011416 Leisingera aquaemixtae Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera aquaemixtae 1396826 CYSR00000000.1 Bac0011417 Achromobacter sp. 2789STDY5608636 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella pseudohinzii 1331258 CYTV00000000.1 Bac0011418 Ruegeria sp. CECT 5091 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria denitrificans 1715692 CYUD00000000.1 Bac0011419 Blautia hydrogenotrophica strain 2789STDY5608857 "Blautia hydrogenotrophica strain 2789STDY5608857 is a Gram-positive anaerobic bacterium characterized by its ability to thrive in oxygen-deprived environments. This strain is part of the Blautia genus, which is known for its role in the human gut microbiota, contributing to various metabolic processes. The anaerobic nature of this strain suggests that it may engage in fermentation pathways, utilizing substrates that are typically present in anoxic conditions. ↵↵The Gram-positive classification indicates a thick peptidoglycan layer in its cell wall, which is a distinguishing feature that may confer resilience in diverse environmental settings. While specific metabolic pathways for strain 2789STDY5608857 have not been detailed, related species within the Blautia genus are often involved in the fermentation of carbohydrates, potentially leading to the production of short-chain fatty acids, which are beneficial to host health.↵↵This strain's anaerobic lifestyle suggests its ecological role may be significant in the gastrointestinal tract, where it could influence gut health through the modulation of the microbial community and the fermentation of dietary fibers. Such interactions underscore the importance of anaerobic microorganisms in maintaining gut homeostasis and highlight Blautia hydrogenotrophica strain 2789STDY5608857's potential contributions to human health through its metabolic activities in anaerobic niches." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia hydrogenotrophica Positive Anaerobe 53443 CYXL00000000.1 Bac0011420 Parabacteroides distasonis strain 2789STDY5608872 "Parabacteroides distasonis strain 2789STDY5608872 is a Gram-positive, nonsporulating rod-shaped bacterium characterized as an anaerobe, indicating its ecological niche within host-associated environments. This strain, belonging to the genus Parabacteroides, is notable for its adaptation to anaerobic conditions, where it thrives in the absence of oxygen, which is a common characteristic of many intestinal microbiota.↵↵As an inhabitant of host-associated habitats, P. distasonis plays a potential role in the complex microbial ecosystem of the gut, contributing to the maintenance of gut health and homeostasis. While specific interactions or contributions to host metabolism are not detailed here, members of the Parabacteroides genus are known to be involved in the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for host energy metabolism.↵↵The strain's nonsporulating nature suggests that it relies on robust survival strategies within its host environment rather than forming spores to withstand harsh conditions. This trait may reflect its evolutionary adaptations to a stable niche, where it can effectively proliferate and exert its biological functions. Overall, understanding the role of P. distasonis strain 2789STDY5608872 in the gut microbiome could provide insights into its implications for host health and potential applications in microbiome research." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 CYXP00000000.1 Bac0011421 Coprococcus comes strain 2789STDY5834962 "Coprococcus comes strain 2789STDY5834962 is a Gram-positive, anaerobic coccus known for its role in the human gut microbiota. The spherical shape of this microorganism facilitates its adaptation to the anaerobic environments typically found within the intestines, where it may contribute to various metabolic processes. ↵↵As an anaerobe, Coprococcus comes strain 2789STDY5834962 thrives in conditions devoid of oxygen, which is characteristic of many gut-dwelling bacteria. The strain's ability to survive and proliferate in such environments suggests a potential role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. ↵↵The presence of this strain in the gastrointestinal tract highlights its potential contributions to gut health, particularly in maintaining microbial diversity and supporting metabolic functions. This unique ecological niche underscores the importance of anaerobic cocci like Coprococcus comes in shaping the overall gut microbiome and their potential implications for host physiology. Further research may elucidate the specific biochemical pathways employed by this strain and its interactions within the complex microbial community of the intestine." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Allocoprococcus Allocoprococcus comes Positive Cocci Anaerobe 410072 CYXR00000000.1 Bac0011422 Anaerostipes hadrus strain 2789STDY5608868 "Anaerostipes hadrus strain 2789STDY5608868 is a Gram-positive, strictly anaerobic bacterium predominantly found in the feces and gastrointestinal tract of various hosts. As a member of the diverse gut microbiota, this strain plays a role in the fermentation processes occurring within the anaerobic environment of the intestinal lumen. ↵↵The ability to thrive in such an oxygen-deprived habitat suggests that Anaerostipes hadrus strain 2789STDY5608868 is well-adapted to the unique biochemical conditions of the gut, where it likely contributes to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are important for host energy metabolism and gut health. ↵↵This strain's specific adaptations to the intestinal ecosystem highlight its potential significance in maintaining gut homeostasis and influencing the overall health of the host. Understanding the metabolic capabilities of Anaerostipes hadrus strain 2789STDY5608868 may provide insights into its role in the gut microbiome and its interactions with other microbial species, ultimately contributing to our knowledge of microbial ecology and host-microbe interactions." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes hadrus Positive Anaerobe feces; gut 649756 CYXT00000000.1 Bac0011423 Roseburia inulinivorans strain 2789STDY5608887 "Roseburia inulinivorans strain 2789STDY5608887 is a Gram-positive, non-sporulating anaerobic bacterium that optimally thrives at a temperature of 37.0°C. This strain exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources. Its ability to thrive in multiple habitats suggests a versatile ecological role, potentially contributing to various microbiomes, particularly those associated with the gastrointestinal tract of mammals.↵↵As an anaerobe, R. inulinivorans strain 2789STDY5608887 is adapted to environments devoid of oxygen, where it may play a significant role in the fermentation of dietary fibers, including inulin. The presence of such bacteria is often linked to beneficial effects on host health, including modulation of gut microbiota composition and potential improvements in metabolic functions. Furthermore, the strain's capacity to thrive in diverse habitats may indicate its adaptability and importance in different ecological niches, which could have implications for understanding gut health and the microbial ecosystem's dynamics. This adaptability highlights the potential of R. inulinivorans in contributing to the metabolic processes that influence host health and nutrient absorption in anaerobic environments." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia inulinivorans Positive No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 360807 CYXX00000000.1 Bac0011424 [Ruminococcus] torques strain 2789STDY5834965 "[Ruminococcus] torques strain 2789STDY5834965 is a Gram-positive, anaerobic coccus known for its role in the gastrointestinal microbiota. This strain is characterized by its spherical shape, which is typical of many cocci, and its strict anaerobic requirement suggests it thrives in oxygen-free environments, such as the human gut.↵↵As a member of the genus Ruminococcus, this strain is likely involved in the fermentation of complex carbohydrates, contributing to the overall metabolism of the gut microbiome. The ability to survive and proliferate in anaerobic conditions indicates its adaptation to the gut environment, where oxygen levels are minimal. This trait may also influence the interactions with other microbial species present in the gut, potentially playing a role in maintaining microbial diversity and gut health.↵↵The presence of [Ruminococcus] torques strain 2789STDY5834965 highlights the importance of anaerobic cocci in digestion and nutrient absorption, as they may assist in breaking down dietary fibers that are otherwise indigestible. This function is crucial for the host, as it can lead to the production of short-chain fatty acids, which are beneficial for intestinal health and have systemic effects on metabolism. Overall, the characteristics of this strain underscore the intricate relationships between gut microbes and their hosts, particularly in the context of digestive processes and microbial community dynamics." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter torques Positive Cocci Anaerobe 33039 CYYD00000000.1 Bac0011425 Anaerostipes hadrus strain 2789STDY5608830 "Anaerostipes hadrus strain 2789STDY5608830 is a Gram-positive anaerobic bacterium primarily found in fecal matter and the gut environment of various hosts. This strain is part of a diverse group of microorganisms that contribute to the complex microbial communities within the gastrointestinal tract, where it plays a role in the fermentation of dietary fibers and other substrates.↵↵As an anaerobe, A. hadrus strain 2789STDY5608830 thrives in environments devoid of oxygen, which is characteristic of the gut microbiome, where oxygen levels are minimal. The presence of this bacterium in fecal matter suggests its adaptation to the nutrient-rich conditions of the digestive system, where it may participate in metabolic processes that are crucial for host health and nutrient absorption.↵↵The metabolic capabilities of A. hadrus, while not detailed in the provided traits, can be inferred to involve the fermentation of carbohydrates, potentially leading to the production of short-chain fatty acids that are beneficial for colon health. The ecological role of this strain underscores the importance of anaerobic bacteria in maintaining gut homeostasis and supporting the overall metabolic functions of the host. Further studies on this strain could illuminate its specific contributions to gut health and its interactions within the complex microbial ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes hadrus Positive Anaerobe feces; gut 649756 CYYH00000000.1 Bac0011426 Parabacteroides distasonis strain 2789STDY5608822 "Parabacteroides distasonis strain 2789STDY5608822 is a Gram-positive, nonsporulating rod-shaped bacterium that is classified as an anaerobe, indicating its growth is optimal in the absence of oxygen. This strain is host-associated, suggesting that it is commonly found in the gastrointestinal tract of various hosts, where it likely plays a role in the microbiota. ↵↵The characteristics of P. distasonis strain 2789STDY5608822 align with those of other members of the genus Parabacteroides, which are known to contribute to the fermentation of complex carbohydrates in the gut. The anaerobic nature of this strain reflects its adaptation to the intestinal environment, where oxygen levels are significantly lower than in the external environment. ↵↵Given its habitat and metabolic properties, it is plausible that P. distasonis strain 2789STDY5608822 could be involved in the digestion of dietary fibers, potentially producing short-chain fatty acids that serve as energy sources for host cells and contribute to gut health. Further exploration of this strain's specific metabolic capabilities may provide insights into its functional roles within the host-associated microbiome and its contributions to overall health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 CYYK00000000.1 Bac0011427 Faecalibacterium prausnitzii strain 2789STDY5608869 "Faecalibacterium prausnitzii strain 2789STDY5608869 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits anaerobic metabolism and thrives optimally at 37.0°C. As a chemoheterotroph, this bacterium utilizes organic compounds as its energy source, reflecting its adaptation to a variety of habitats, particularly within the gastrointestinal tracts of humans and other animals.↵↵The absence of sporulation in this strain indicates a reliance on stable environments for survival, aligning with its anaerobic growth requirements. F. prausnitzii is often recognized for its role in the gut microbiome, where it contributes to the maintenance of gut health through the production of beneficial metabolites. This strain, like others in its species, may play a role in modulating immune responses and maintaining intestinal homeostasis, although specific functions related to strain 2789STDY5608869 have not been detailed in the provided data.↵↵The ecological versatility of F. prausnitzii is noteworthy, as it can inhabit diverse environments while demonstrating a preference for anaerobic conditions, making it an integral component of microbial communities in various ecosystems. This adaptability underscores its potential significance in understanding microbial interactions within the gut and their implications for host health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 CYYL00000000.1 Bac0011428 Agathobacter rectalis strain 2789STDY5608860 "Agathobacter rectalis strain 2789STDY5608860 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments and is classified as a chemoheterotroph, utilizing organic compounds for energy. This strain is nonsporulating, indicating that it does not produce spores as a means of survival under unfavorable conditions. Optimal growth occurs at a temperature of 37.0°C, which is consistent with the conditions found in the human gut, suggesting a potential association with gastrointestinal microbiota. ↵↵Agathobacter rectalis is known to inhabit multiple habitats, which may include various anaerobic niches across different environments. The nonsporulating characteristic could imply a reliance on stable conditions for growth, as the absence of spores limits its resilience to extreme environmental stressors. ↵↵Understanding the ecological role of Agathobacter rectalis strain 2789STDY5608860 may provide insights into its contributions to microbial diversity and functionality within anaerobic ecosystems, particularly in the human microbiome. Further investigation into its metabolic pathways could reveal its interactions with other gut microbiota and its potential influence on host health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 CYYW00000000.1 Bac0011429 Coprococcus eutactus strain 2789STDY5608829 "Coprococcus eutactus strain 2789STDY5608829 is a Gram-positive, cocci-shaped anaerobic bacterium. This strain is part of the diverse microbial community typically found in the gastrointestinal tract of humans and other mammals. As a Gram-positive organism, C. eutactus exhibits a thick peptidoglycan layer in its cell wall, which is characteristic of this group and may contribute to its resilience in anaerobic environments. The cocci morphology indicates that the cells are spherical in shape, a form that can influence their interactions within microbial communities.↵↵C. eutactus is classified as an anaerobe, meaning it thrives in environments devoid of oxygen. This trait is significant as it suggests the bacterium plays a role in fermentative processes occurring in the gut, where oxygen levels are low. Anaerobic bacteria like C. eutactus are essential for the breakdown of complex carbohydrates and contribute to the overall fermentation processes that yield short-chain fatty acids, which are beneficial for gut health.↵↵The ecological role of Coprococcus eutactus strain 2789STDY5608829 may extend beyond digestion; its presence in the gut microbiome could be indicative of a symbiotic relationship with the host, potentially influencing nutrient absorption and immune responses. Further research into this strain could elucidate its specific functional contributions to gut health and the maintenance of microbial balance in anaerobic environments." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus eutactus Positive Cocci Anaerobe 33043 CYYZ00000000.1 Bac0011430 Catenibacterium mitsuokai strain 2789STDY5608825 "Catenibacterium mitsuokai strain 2789STDY5608825 is a Gram-positive anaerobic bacterium that exhibits distinctive characteristics indicative of its ecological niche. As a member of the genus Catenibacterium, this strain is adapted to thrive in environments devoid of oxygen, which suggests that it may play a role in anaerobic processes such as fermentation or the degradation of organic matter. ↵↵The Gram-positive nature of Catenibacterium mitsuokai strain 2789STDY5608825 implies a thicker peptidoglycan layer in its cell wall, which may contribute to its resilience in anaerobic habitats. The strain's adaptation to an anaerobic lifestyle may facilitate its involvement in the microbiota of specific environments, such as the gastrointestinal tracts of animals or anaerobic sediments, where it may contribute to nutrient cycling or the maintenance of microbial community dynamics.↵↵Further studies on Catenibacterium mitsuokai strain 2789STDY5608825 could provide valuable insights into its metabolic capabilities and interactions within anaerobic ecosystems, particularly in understanding how such bacteria contribute to the breakdown of complex organic materials and the overall health of microbial communities in oxygen-deprived environments." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Catenibacterium Catenibacterium mitsuokai Positive Anaerobe 100886 CYZB00000000.1 Bac0011431 Coprococcus comes strain 2789STDY5834866 "Coprococcus comes strain 2789STDY5834866 is a Gram-positive, cocci-shaped bacterium characterized as an anaerobe. This strain, belonging to the genus Coprococcus, is notable for its ability to thrive in environments devoid of oxygen, which is typical for many members of the gut microbiota. The Gram-positive nature of this bacterium indicates a thick peptidoglycan layer in its cell wall, a trait often associated with various beneficial roles in digestive health.↵↵As an anaerobic organism, Coprococcus comes strain 2789STDY5834866 plays a significant role in the fermentation processes occurring within the gastrointestinal tract. Anaerobes like this strain contribute to the breakdown of complex carbohydrates, leading to the production of short-chain fatty acids (SCFAs), which are critical for maintaining gut health and influencing host metabolism. ↵↵Research into the metabolic capabilities and interactions of this strain may provide insights into its contributions to gut homeostasis and its potential effects on overall health. Given its ecological niche, Coprococcus comes strain 2789STDY5834866 could serve as a model for studying the dynamics of gut microbiota and their influence on host physiological functions, particularly in the context of anaerobic fermentation and SCFA production. Understanding the specific roles of such strains may further elucidate the complex interplay between diet, microbiome composition, and health outcomes." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Allocoprococcus Allocoprococcus comes Positive Cocci Anaerobe 410072 CYZK00000000.1 Bac0011432 [Ruminococcus] torques strain 2789STDY5834841 "[Ruminococcus] torques strain 2789STDY5834841 is a Gram-positive anaerobic coccus, characterized by its spherical shape. This strain belongs to a genus known for its role in the fermentation of complex carbohydrates, which suggests its involvement in the digestive processes of various hosts, particularly in the gastrointestinal tract of ruminants and humans. As an anaerobe, [Ruminococcus] torques strain 2789STDY5834841 thrives in environments devoid of oxygen, which aligns with its ecological niche in the gut microbiome where oxygen levels are low.↵↵The coccoid morphology of this strain may facilitate its ability to form biofilms or clusters, potentially enhancing its stability and functionality within the anaerobic gut ecosystem. The metabolic pathways utilized by [Ruminococcus] torques strains often include the fermentation of polysaccharides, which can lead to the production of short-chain fatty acids, important metabolites that serve as energy sources for host cells and play a role in maintaining gut health.↵↵Given its anaerobic nature and coccal shape, [Ruminococcus] torques strain 2789STDY5834841 may contribute to the complex interactions within the gut microbiota, influencing not only digestion but also the overall metabolic health of the host. This strain exemplifies the intricate balance of microbial communities in the gut, where anaerobic bacteria like [Ruminococcus] torques are essential for the effective breakdown of dietary fibers and the maintenance of a healthy gut environment." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter torques Positive Cocci Anaerobe 33039 CYZO00000000.1 Bac0011433 Bacteroides xylanisolvens strain 2789STDY5608839 "Bacteroides xylanisolvens strain 2789STDY5608839 is a Gram-negative anaerobic bacterium characterized by its ability to metabolize xylan, a major component of plant hemicellulose. As a member of the genus Bacteroides, this strain is adapted to thrive in environments devoid of oxygen, reflecting its anaerobic nature. The Gram-negative cell wall structure of B. xylanisolvens strain 2789STDY5608839 contributes to its resilience in various ecological niches, particularly within the gastrointestinal tracts of mammals, where it plays a role in the breakdown of complex carbohydrates.↵↵The metabolic capabilities of Bacteroides xylanisolvens have garnered interest in the context of gut microbiota and its potential contributions to human health. By fermenting xylan, this strain may facilitate the utilization of dietary fibers, thereby influencing nutrient absorption and overall gut health. Furthermore, its role in the degradation of complex polysaccharides positions it as a key player in the microbial ecosystem, potentially affecting the composition and function of the gut microbiome.↵↵Understanding the specific metabolic pathways and interactions of Bacteroides xylanisolvens strain 2789STDY5608839 may provide insights into its ecological role in the gut and its potential applications in promoting digestive health through dietary interventions. This emphasizes the importance of anaerobic microbes in maintaining the balance and functionality of complex microbial communities." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 CYZS00000000.1 Bac0011434 Clostridium disporicum strain 2789STDY5834855 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium disporicum 84024 CYZV00000000.1 Bac0011435 Clostridium disporicum strain 2789STDY5834856 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium disporicum 84024 CYZX00000000.1 Bac0011436 [Clostridium] symbiosum strain 2789STDY5834864 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Otoolea [Clostridium] symbiosum 1512 CYZY00000000.1 Bac0011437 [Clostridium] clostridioforme strain 2789STDY5834865 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis piglet gut 1531 CZAB00000000.1 Bac0011438 Dorea longicatena strain 2789STDY5834867 "Dorea longicatena strain 2789STDY5834867 is a Gram-positive, anaerobic bacterium characterized by its ability to thrive in low-oxygen environments. This strain is part of the Dorea genus, which is known to inhabit various anaerobic niches, particularly within the gastrointestinal tract of mammals. The anaerobic nature of Dorea longicatena suggests a metabolic adaptation that allows it to ferment substrates in the absence of oxygen, potentially utilizing carbohydrates as energy sources.↵↵While the specific metabolic pathways of strain 2789STDY5834867 have not been detailed in the provided traits, members of the Dorea genus are often involved in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids (SCFAs) such as butyrate. These SCFAs play a significant role in maintaining gut health and have been associated with various beneficial effects on host metabolism.↵↵The presence of Dorea longicatena in the human microbiome may indicate its involvement in complex microbial interactions that are crucial for digestive health. Its anaerobic metabolism could contribute to the overall balance of gut microbiota, potentially influencing the host's immune response and metabolic processes. Understanding the ecological role of this strain may provide insights into its contributions to gut homeostasis and the implications of microbial diversity in health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea longicatena Positive Anaerobe 88431 CZAC00000000.1 Bac0011439 Bacteroides faecis strain 2789STDY5834846 "Bacteroides faecis strain 2789STDY5834846 is a Gram-negative anaerobic bacterium characterized by its capacity to thrive in oxygen-depleted environments. This strain belongs to the Bacteroides genus, which is known for its significant role in the human gut microbiome, participating in the breakdown of complex carbohydrates and contributing to overall gut health.↵↵As an anaerobe, B. faecis strain 2789STDY5834846 likely utilizes fermentation pathways for energy production, which is indicative of its adaptation to environments where oxygen is limited. This metabolic characteristic allows it to cohabit with other microbial species in the gastrointestinal tract, contributing to a balanced microbial ecosystem. The presence of Bacteroides species, such as this strain, is often associated with the maintenance of gut homeostasis and may play a role in preventing the overgrowth of pathogenic organisms.↵↵Furthermore, the Gram-negative nature of B. faecis strain 2789STDY5834846 suggests that it possesses an outer membrane containing lipopolysaccharides, which can influence immune responses in the host. While specific pathogenicity traits are not noted for this strain, the interplay between B. faecis and the host's immune system could provide insights into how beneficial gut microbes interact with host defenses. Understanding the ecological roles of such strains may contribute to the development of probiotic therapies aimed at restoring or enhancing gut health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides faecis Negative Anaerobe 674529 CZAE00000000.1 Bac0011440 Bacteroides uniformis strain 2789STDY5834847 "Bacteroides uniformis strain 2789STDY5834847 is a Gram-negative anaerobic bacterium primarily residing in the gastrointestinal tract. This strain occupies the gut luminal niche, where it plays a significant role in the complex microbial ecosystem of the intestinal tract. As an obligate anaerobe, B. uniformis strain 2789STDY5834847 thrives in environments devoid of oxygen, which is typical of the gut environment, allowing it to engage in metabolic processes that are essential for maintaining gut health.↵↵Bacteroides species, including this strain, are known for their ability to metabolize complex polysaccharides and produce short-chain fatty acids, which are crucial for host energy metabolism and maintaining gut homeostasis. The presence of B. uniformis in the gut microbiota suggests a potential contribution to the fermentation of dietary fibers, thereby influencing the overall gut microbiome composition and functionality.↵↵Understanding the specific characteristics and ecological role of Bacteroides uniformis strain 2789STDY5834847 can provide insights into its contributions to gut health and the maintenance of a balanced intestinal microbiome, emphasizing the importance of anaerobic bacteria in human health and disease prevention. Further studies may elucidate the mechanisms through which this strain interacts with the host and other microbial populations, enhancing our understanding of gut microbiota dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 CZAF00000000.1 Bac0011441 Lachnospira pectinoschiza strain 2789STDY5834886 "Lachnospira pectinoschiza strain 2789STDY5834886 is a Gram-positive, nonsporulating bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This strain is part of the animal intestinal microflora, indicating its potential role in the gut ecosystem of its host. ↵↵The absence of sporulation suggests that this strain relies on stable environmental conditions typically found within the intestinal tract for survival and reproduction. As a member of the intestinal microbiota, Lachnospira pectinoschiza may be involved in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids (SCFAs), which are vital for host metabolism and maintaining gut health. ↵↵Moreover, its specific adaptations to the intestinal environment provide insight into the complex interactions between gut microbiota and host physiology. The presence of L. pectinoschiza may play a role in modulating the gut environment, potentially influencing nutrient absorption and immune response. Further research could elucidate its specific functions within the microbiome and its impact on host health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira pectinoschiza Positive No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 28052 CZAK00000000.1 Bac0011442 Parabacteroides distasonis strain 2789STDY5834901 "Parabacteroides distasonis strain 2789STDY5834901 is a Gram-positive, rod-shaped anaerobic bacterium that is nonsporulating and primarily associated with host environments. This strain is part of the diverse microbial communities found within the gastrointestinal tracts of various hosts, where it may play a significant role in host-microbe interactions. As a member of the Bacteroidetes phylum, P. distasonis contributes to the fermentation of complex carbohydrates, facilitating nutrient absorption and potentially influencing the host's metabolic processes.↵↵The anaerobic nature of P. distasonis suggests that it thrives in low-oxygen environments, which is typical for gut-associated microorganisms. Its nonsporulating characteristic indicates that it does not form spores to withstand adverse conditions, relying instead on stable habitats provided by host organisms. This trait may reflect its adaptation to a symbiotic lifestyle, where it engages in metabolic exchanges with the host and other microbial inhabitants.↵↵The presence of Parabacteroides distasonis in the gut microbiota may also have implications for the digestion of dietary fibers and the synthesis of short-chain fatty acids, which are important for maintaining gut health and influencing immune responses. Further research into this strain could elucidate its specific metabolic functions and interactions within the gut microbiome, enhancing our understanding of its ecological role in host-associated environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 CZAR00000000.1 Bac0011443 Flavonifractor plautii strain 2789STDY5834892 "Flavonifractor plautii strain 2789STDY5834892 is a Gram-positive bacterium classified within the human gut microbiota, exhibiting facultative anaerobic characteristics. This indicates that the strain can utilize oxygen when available but can also sustain metabolic processes in its absence, a feature that supports its adaptation to the variable oxygen levels present in the gastrointestinal tract. ↵↵Belonging to a diverse community of microorganisms, Flavonifractor plautii plays a potential role in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids, which are beneficial for gut health and are known to influence host metabolism and immune responses. The presence of strain 2789STDY5834892 in the human gut highlights the importance of understanding individual microbial profiles, as variations in gut microbiota composition can significantly affect overall health. Further investigation into this strain may provide insights into its specific metabolic capabilities and interactions with other gut microbiota, potentially informing future research on the complex relationships between diet, microbiota, and human health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii Positive Facultative anaerobe human gut microbiota 292800 CZAS00000000.1 Bac0011444 Anaerotruncus colihominis strain 2789STDY5834939 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus colihominis caeca; feces; rectal mucosa 169435 CZBE00000000.1 Bac0011445 Bacteroides caccae strain 2789STDY5834946 "Bacteroides caccae strain 2789STDY5834946 is a Gram-negative, anaerobic bacterium belonging to the genus Bacteroides. This microbe is characterized by its inability to thrive in the presence of oxygen, which is typical for many members of the Bacteroides genus that inhabit anaerobic environments. Bacteroides caccae is known to be part of the human gut microbiota, contributing to the complex ecosystem of microorganisms that play crucial roles in digestion and metabolic processes.↵↵As a Gram-negative organism, B. caccae strain 2789STDY5834946 possesses a thin peptidoglycan layer surrounded by an outer membrane, which includes lipopolysaccharides. This structural configuration is significant as it can influence the bacterium's interactions with the host's immune system and contribute to its survival in the gastrointestinal tract.↵↵The anaerobic nature of B. caccae suggests it is well-adapted to environments where oxygen is absent, such as the colon, where it may participate in the fermentation of complex carbohydrates. This fermentation process can produce short-chain fatty acids, which are beneficial for the host's health by serving as an energy source for colonocytes and playing a role in maintaining gut health.↵↵Overall, the traits of Bacteroides caccae strain 2789STDY5834946 highlight its potential importance in gut microbiota dynamics, emphasizing its role in nutrient metabolism and the maintenance of host homeostasis in anaerobic conditions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe 47678 CZBL00000000.1 Bac0011446 Turicibacter sanguinis strain 2789STDY5834949 "Turicibacter sanguinis strain 2789STDY5834949 is a Gram-positive, nonsporulating rod-shaped bacterium characterized as a chemoheterotroph with an optimal growth temperature of 37.0°C. This strain exhibits anaerobic growth, indicating that it thrives in environments devoid of oxygen. Its ability to utilize a range of organic compounds for energy suggests a flexible metabolic capability, allowing it to inhabit multiple ecosystems.↵↵The nonsporulating nature of T. sanguinis strain 2789STDY5834949 implies a reliance on stable environmental conditions for survival, as it does not form spores that can endure unfavorable conditions. This trait may be reflective of its ecological niches, potentially including gastrointestinal environments where stable, nutrient-rich substrates are available. ↵↵Understanding the ecological roles of T. sanguinis can provide insights into its interactions within microbial communities, particularly in anaerobic habitats. Its presence in diverse environments may suggest a functional importance in nutrient cycling, potentially contributing to the breakdown of complex organic matter in anaerobic conditions. Further research could elucidate its specific roles and interactions within these microbiomes, enhancing our understanding of microbial ecology in anaerobic settings." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Turicibacter sanguinis Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 154288 CZBN00000000.1 Bac0011447 Blautia obeum strain 2789STDY5834957 "Blautia obeum strain 2789STDY5834957 is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, residing primarily within the intestinal microflora of animals. This anaerobic microbe thrives in environments devoid of oxygen, where it utilizes organic compounds as its energy source. The presence of B. obeum in the gut microbiome suggests its potential role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are essential for maintaining gut health and influencing host metabolism.↵↵Notably, the composition of gut microbiota, including Blautia species, has been associated with various physiological processes in the host, such as immune regulation and modulation of metabolic pathways. The specific environmental adaptations of Blautia obeum strain 2789STDY5834957, characterized by its anaerobic metabolism and its ability to occupy a niche within the intestinal ecosystem, may contribute to its significant role in maintaining a balanced microbiome and promoting digestive health. Further investigations into the functional capacities and interactions of this strain within the gut environment could provide deeper insights into its contributions to host health and disease prevention." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 CZBP00000000.1 Bac0011448 [Eubacterium] eligens strain 2789STDY5834875 "[Eubacterium] eligens strain 2789STDY5834875 is a Gram-negative, rod-shaped bacterium classified as an anaerobe, suggesting it thrives in oxygen-free environments. This strain is host-associated, indicating a potential symbiotic or commensal relationship with its host organism. As an anaerobic bacterium, [Eubacterium] eligens strain 2789STDY5834875 likely plays a role in the complex microbial ecosystems found within the gastrointestinal tracts of various hosts, contributing to processes such as fermentation and the metabolism of dietary components.↵↵The anaerobic lifestyle of this strain suggests it may be involved in the breakdown of complex carbohydrates, producing short-chain fatty acids that can be beneficial to the host's health. This metabolic activity could influence host energy balance and immune function, highlighting the potential importance of [Eubacterium] eligens strain 2789STDY5834875 in maintaining gut health and homeostasis. Its presence in host-associated environments underscores the intricate relationships between bacteria and their hosts, and the potential for specific strains to contribute positively to the host's overall well-being through microbial interactions. Further research is warranted to elucidate the precise functions and contributions of this strain within its ecological niche." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira eligens Negative Rod 1 Anaerobe Mesophilic HostAssociated Free living 39485 CZBU00000000.1 Bac0011449 [Eubacterium] siraeum strain 2789STDY5834928 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae [Eubacterium] siraeum gut 39492 CZBY00000000.1 Bac0011450 Planktothrix paucivesiculata PCC 9631 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix paucivesiculata 671071 CZCS00000000.2 Bac0011451 Planktothrix rubescens strain PCC 7821 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix rubescens 59512 CZCZ00000000.2 Bac0011452 Bradyrhizobium sp. G22 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. G22 1839752 CZWJ00000000.1 Bac0011453 MAG TPA_asm: Candidatus Gastranaerophilales bacterium HUM_1 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_1 1916322 DAAY00000000.1 Bac0011454 MAG TPA_asm: Candidatus Gastranaerophilales bacterium HUM_2 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_2 1916214 DAAZ00000000.1 Bac0011455 MAG TPA_asm: Candidatus Gastranaerophilales bacterium HUM_3 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_3 1916217 DABA00000000.1 Bac0011456 MAG TPA_asm: Candidatus Gastranaerophilales bacterium HUM_4 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_4 1916218 DABB00000000.1 Bac0011457 MAG TPA_asm: Candidatus Gastranaerophilales bacterium HUM_11 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_11 1916216 DABI00000000.1 Bac0011458 MAG TPA_asm: Candidatus Gastranaerophilales bacterium HUM_18 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_18 1916231 DABP00000000.1 Bac0011459 MAG TPA_asm: Candidatus Gastranaerophilales bacterium HUM_23 Bacillati Candidatus Melainabacteria Candidatus Gastranaerophilales Candidatus Gastranaerophilales bacterium HUM_23 1916222 DABU00000000.1 Bac0011460 MAG TPA_asm: Sulfurimonas sp. UBA12504 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp. UBA12504 2015903 DLUD00000000.1 Bac0011461 MAG TPA_asm: Sulfurospirillum sp. UBA12182 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UBA12182 2015905 DLUF00000000.1 Bac0011462 MAG TPA_asm: Rhodobiaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhodobiaceae Rhodobiaceae bacterium 2026785 DLXY00000000.1 Bac0011463 MAG TPA_asm: Dialister sp. Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister sp. 1955814 DLZS00000000.1 Bac0011464 MAG TPA_asm: Eubacteriaceae bacterium Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacteriaceae bacterium 2049045 DMAW00000000.1 Bac0011465 MAG TPA_asm: Sphingobacterium sp. Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. 341027 DMBY00000000.1 Bac0011466 MAG TPA_asm: Candidatus Atribacteria bacterium Pseudomonadati Atribacterota Atribacteria Candidatus Atribacteria bacterium 2053509 DMCY00000000.1 Bac0011467 MAG TPA_asm: Candidatus Omnitrophota bacterium Pseudomonadati Candidatus Omnitrophota Candidatus Omnitrophota bacterium 2035772 DMEX00000000.1 Bac0011468 MAG TPA_asm: Candidatus Komeilibacteria bacterium Candidatus Komeiliibacteriota Candidatus Komeilibacteria bacterium 2053566 DMEY00000000.1 Bac0011469 MAG TPA_asm: Brevundimonas sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. 1871086 DMFA00000000.1 Bac0011470 MAG TPA_asm: Ktedonobacter sp. Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonobacter Ktedonobacter sp. 1932716 DMFQ00000000.1 Bac0011471 MAG TPA_asm: Treponema sp. "Treponema sp. (MAG TPA_asm) is a nonsporulating, anaerobic bacterium characterized by its spirilla shape and filamentous cell arrangement. As a chemoheterotroph, this microbe derives its energy from organic compounds, reflecting a metabolic strategy that enables it to thrive in diverse habitats. The anaerobic requirement suggests that Treponema sp. primarily exists in environments devoid of oxygen, potentially including anaerobic sediments or the gastrointestinal tracts of various hosts.↵↵This organism's filamentous structure may provide advantages in nutrient absorption and biofilm formation, allowing it to occupy specific ecological niches effectively. The diverse habitats in which Treponema sp. can be found indicate its adaptability and potential role in various biogeochemical processes. Given its chemoheterotrophic lifestyle and anaerobic nature, this microbe likely participates in the decomposition of organic matter, contributing to nutrient cycling in its ecosystems.↵↵Understanding the ecological roles of Treponema sp. can provide insights into its contributions to microbial communities and the overall health of the environments it inhabits, particularly in anaerobic settings where it may play a critical role in organic matter breakdown and nutrient availability." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. Spirilla Yes 1 Anaerobic Chemoheterotroph Multiple Filaments Nonsporulating 166 DMFX00000000.1 Bac0011472 MAG TPA_asm: Microscillaceae bacterium Pseudomonadati Bacteroidota Cytophagia Cytophagales Microscillaceae Microscillaceae bacterium 2053581 DMHB00000000.1 Bac0011473 MAG TPA_asm: Bacteroides sp. "MAG TPA_asm, a member of the Bacteroides genus, is a Gram-negative anaerobic bacterium predominantly found in the gut and vaginal microbiota. This microbe thrives in an oxygen-depleted environment, which is characteristic of its habitats, enabling it to play a crucial role in maintaining the homeostasis of these ecosystems. ↵↵Bacteroides species are known for their ability to degrade complex carbohydrates and contribute to the fermentation processes within the gut, thereby producing short-chain fatty acids that are beneficial for host health. In the context of the vaginal microbiome, the presence of anaerobic bacteria like MAG TPA_asm may influence the local microbial community structure and potentially impact reproductive health.↵↵The ecological role of MAG TPA_asm is likely intertwined with its interactions with other microbial species and the host, reinforcing the importance of anaerobic bacteria in both gut and vaginal environments. Understanding the specific contributions of this organism to microbial diversity and function in these niches could provide insights into its potential roles in health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. negative anaerobic gut; vaginas 29523 DMHY00000000.1 Bac0011474 MAG TPA_asm: Runella sp. Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Runella Runella sp. 1960881 DMIU00000000.1 Bac0011475 MAG TPA_asm: Nitrospina sp. Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp. 2024844 DMJP00000000.1 Bac0011476 MAG TPA_asm: Streptococcus sp. "Streptococcus sp. MAG TPA_asm is a Gram-positive coccus that has been identified in various ecological niches, including the lower respiratory tract, rumen, and sputum. The spherical morphology of this bacterium is characteristic of the Streptococcus genus, which is known for its diverse habitats and roles in different biological contexts.↵↵The presence of Streptococcus sp. in the lower respiratory tract may suggest its potential involvement in respiratory microbiomes, although the specific interactions or implications of this organism within such environments require further investigation. Additionally, its detection in the rumen indicates a possible role in the digestive processes of herbivorous animals, where it may contribute to the fermentation of complex carbohydrates. The presence of this microbe in sputum samples could also reflect its association with respiratory health or disease states, although this warrants cautious interpretation without further context regarding its abundance or activity.↵↵Overall, the versatility of Streptococcus sp. MAG TPA_asm in inhabiting both the gastrointestinal tract and respiratory environments underscores the potential for this microbe to play multifaceted roles in host physiology and ecology. Future studies may elucidate its functional contributions within these niches, enhancing our understanding of its ecological significance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. positive Cocci lower respiratory tract; rumen; sputum 1306 DMKA00000000.1 Bac0011477 MAG TPA_asm: Elusimicrobiota bacterium Pseudomonadati Elusimicrobiota Elusimicrobiota bacterium 2030800 DMMY00000000.1 Bac0011478 MAG TPA_asm: Alcanivorax sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. 1872427 DMNJ00000000.1 Bac0011479 MAG TPA_asm: Lachnospiraceae bacterium Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 1898203 DMNU00000000.1 Bac0011480 MAG TPA_asm: Prolixibacteraceae bacterium Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Prolixibacteraceae bacterium 2053594 DMSQ00000000.1 Bac0011481 MAG TPA_asm: Cryomorphaceae bacterium Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Cryomorphaceae Cryomorphaceae bacterium 1898111 DMUC00000000.1 Bac0011482 MAG TPA_asm: Eubacterium sp. "Eubacterium sp. MAG TPA_asm is a Gram-positive, non-sporulating bacterium that primarily exists as chains and is classified as a chemoheterotroph. This organism thrives in anaerobic conditions, indicating its ecological role within the animal intestinal microflora, where it contributes to the complex microbial community. ↵↵The optimal growth temperature for Eubacterium sp. MAG TPA_asm is 37.0°C, which corresponds to the physiological temperature of many warm-blooded hosts, suggesting a close association with animal hosts in its natural habitat. As an anaerobe, it likely participates in various metabolic processes that occur in the oxygen-depleted environment of the intestine, including fermentation and the breakdown of complex carbohydrates.↵↵The presence of Eubacterium sp. within the gut microbiome highlights its potential role in maintaining gut health and influencing host metabolism. Its chemoheterotrophic lifestyle suggests that it may utilize a range of organic compounds as energy sources, which can have implications for nutrient absorption and overall gut function. Understanding the specific metabolic pathways and interactions of Eubacterium sp. could provide insights into its contributions to intestinal homeostasis and its potential impact on host health." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. Positive No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Chains Nonsporulating 142586 DMVC00000000.1 Bac0011483 MAG TPA_asm: Oscillospiraceae bacterium "Oscillospiraceae bacterium, designated as MAG TPA_asm, is a member of the Oscillospiraceae family, characterized as an obligate anaerobe. This microbe thrives in environments devoid of oxygen, suggesting its adaptation to anaerobic conditions, which is a significant trait for its metabolic processes and ecological niche. The Gram stain characteristics of Oscillospiraceae bacterium remain uncharacterized, indicating that further investigation is necessary to determine its cell wall structure and potential implications for its classification within the bacterial kingdom.↵↵Given its obligate anaerobic nature, Oscillospiraceae bacterium likely plays a crucial role in anaerobic digestion and fermentation processes, contributing to the breakdown of organic materials in environments such as the intestines of animals or in various anaerobic biomes. The specific metabolic pathways and substrates utilized by this bacterium, while not detailed, would be vital in understanding its function within microbial communities and its potential interactions with other microorganisms.↵↵The presence of Oscillospiraceae bacterium in anaerobic environments may also provide insights into the evolutionary adaptations of bacteria to low-oxygen habitats, highlighting their importance in biogeochemical cycles and ecosystem dynamics. Further research could elucidate the specific contributions of this bacterium to microbial diversity and its functional role in anaerobic ecosystems." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillospiraceae bacterium Uncharacterized Obligate anaerobe 2485925 DMVD00000000.1 Bac0011484 MAG TPA_asm: Anaerostipes hadrus "Anaerostipes hadrus, classified as a Gram-positive anaerobic bacterium, is predominantly found in the feces of humans and other animals, indicating its specialized adaptation to the gut environment. This microbe thrives in anaerobic conditions, which are characteristic of the intestinal tract, where oxygen levels are minimal. ↵↵As a member of the human gut microbiota, A. hadrus plays a potential role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for maintaining gut health and supporting metabolic processes. The ability of A. hadrus to survive and proliferate in such a unique habitat highlights its significance in the complex microbial community of the gut, where it may contribute to nutrient cycling and the overall homeostasis of the intestinal ecosystem.↵↵Moreover, the presence of A. hadrus in fecal samples suggests its potential utility as a microbiological marker for gut health assessments and underscores its importance in understanding the dynamics of gut microbiota composition in various conditions. Future studies may further elucidate its functional roles and contributions to host health, particularly in relation to diet and gut microbiome interactions." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes hadrus Positive Anaerobe feces; gut 649756 DMVP00000000.1 Bac0011485 MAG TPA_asm: Roseburia sp. "Roseburia sp. (MAG TPA_asm) is a Gram-positive, non-sporulating bacterium that thrives as a chemoheterotroph, utilizing organic compounds as its energy source. It is optimally active at a temperature of 37.0 °C, which aligns with the physiological conditions typically found within the animal intestinal microflora. This microbe plays a significant role in the gut ecosystem, contributing to the breakdown of complex carbohydrates and the fermentation processes that are essential for host health.↵↵As a member of the intestinal microbiota, Roseburia sp. may interact symbiotically with the host, influencing nutrient absorption and immune response. While specific interactions and functions remain to be fully elucidated, its presence in the gut suggests a potential role in maintaining gut homeostasis and overall metabolic health. The study of Roseburia sp. could provide insights into the complex interplay between gut microbiota and host physiology, further illuminating the importance of this microbe in the context of intestinal health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. Positive No 1 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 2049040 DMYD00000000.1 Bac0011486 MAG TPA_asm: Clostridium sp. "Clostridium sp. MAG TPA_asm is a Gram-positive, rod-shaped bacterium that exists primarily as single cells and is characterized by its ability to form spores. This microbe is classified as a chemoheterotroph, deriving its energy from organic compounds, which it metabolizes anaerobically within the animal intestinal microflora. ↵↵The presence of C. sp. MAG TPA_asm in the gut suggests a role in the complex microbial ecosystem, potentially contributing to the breakdown of complex carbohydrates and the fermentation of dietary fibers. Its sporulating capability may confer advantages in surviving the harsh conditions of the gastrointestinal tract, allowing it to endure transit through the digestive system and persist in diverse environments.↵↵Understanding the role of Clostridium sp. MAG TPA_asm in gut microbiota is crucial, as it may interact with host metabolism and influence gut health. The anaerobic lifestyle of this bacterium underscores its adaptation to the low-oxygen environment of the intestines, where it may play a part in maintaining the delicate balance of microbial communities. Further studies could elucidate its specific contributions to gut functionality and overall host health." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. Positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Animal Intestinal Microflora Singles Sporulating 1506 DMZR00000000.1 Bac0011487 MAG TPA_asm: Hydrogenophaga sp. Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. 1904254 DNES00000000.1 Bac0011488 MAG TPA_asm: Accumulibacter sp. Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Accumulibacter sp. 2053492 DNFJ00000000.1 Bac0011489 MAG TPA_asm: Syntrophorhabdus aromaticivorans Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdus Syntrophorhabdus aromaticivorans 328301 DNIU00000000.1 Bac0011490 MAG TPA_asm: Bacteroidales bacterium Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium 2030927 DNKC00000000.1 Bac0011491 MAG TPA_asm: Lentisphaeria bacterium Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaeria bacterium No 1 2053569 DNKO00000000.1 Bac0011492 MAG TPA_asm: Candidatus Wallbacteria bacterium Candidatus Walliibacteriota Candidatus Wallbacteria bacterium 2053640 DNLX00000000.1 Bac0011493 MAG TPA_asm: Sulfitobacter sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. 1903071 DNMU00000000.1 Bac0011494 MAG TPA_asm: Blastocatellia bacterium Pseudomonadati Acidobacteriota Blastocatellia Blastocatellia bacterium 2052146 DNND00000000.1 Bac0011495 MAG TPA_asm: Gemmatimonadota bacterium Pseudomonadati Gemmatimonadota Gemmatimonadota bacterium 2026742 DNOB00000000.1 Bac0011496 MAG TPA_asm: Oscillibacter sp. "Oscillibacter sp. (MAG TPA_asm) is a Gram-positive, nonsporulating bacterium classified as a chemoheterotroph, indicating that it derives its energy from the consumption of organic compounds. This microbe is found within the intestinal microflora of animals, suggesting a potential role in the complex ecosystem of the gut. ↵↵As a member of the intestinal microbiota, Oscillibacter sp. may contribute to various metabolic processes, including the fermentation of dietary fibers and the synthesis of short-chain fatty acids, which are important for gut health and host metabolism. The presence of Oscillibacter sp. underscores the intricate relationships between gut microbes and their host, where they may influence digestive efficiency and overall microbial diversity.↵↵Further studies could elucidate the specific interactions of Oscillibacter sp. within the gut environment, particularly its potential effects on the host's immune response and metabolic pathways. Understanding the functional roles of such microorganisms may enhance our knowledge of gut microbiome dynamics and their implications for animal health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Oscillibacter sp. Positive No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1945593 DNON00000000.1 Bac0011497 MAG TPA_asm: Marinilabiliaceae bacterium Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Marinilabiliaceae bacterium 2053574 DNQT00000000.1 Bac0011498 MAG TPA_asm: Lactobacillus sp. "Lactobacillus sp. MAG TPA_asm is a Gram-positive, rod-shaped bacterium that is primarily found in diverse habitats within the host, including the gut, liver, lungs, and vaginal environments. This organism is characterized by its beneficial role in maintaining microbial balance and supporting host health across various body sites. The presence of Lactobacillus species in the gut is widely recognized for their contribution to digestive health and their potential role in modulating the immune system.↵↵Lactobacillus sp. MAG TPA_asm’s adaptation to multiple habitats suggests a versatile metabolic capability, allowing it to thrive in differing microenvironments. The bacterium's prevalence in both the gut and vaginal microbiota underscores its importance in protecting against pathogenic organisms and contributing to local homeostasis. Moreover, its presence in the liver and lungs indicates potential interactions with systemic health and suggests a broader role in host metabolism and immune responses.↵↵The ecological insight provided by the distribution of Lactobacillus sp. MAG TPA_asm emphasizes the complex interplay between microbiota and host physiology, where this bacterium may influence not only localized functions but also broader systemic health outcomes. Further study of this microbe could illuminate its specific roles and mechanisms in these diverse environments, enhancing our understanding of its potential applications in health and disease management." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. positive Rod gut; liver; lungs; vaginal 1591 DNQW00000000.1 Bac0011499 MAG TPA_asm: Deltaproteobacteria bacterium Pseudomonadati Myxococcota Myxococcia Deltaproteobacteria bacterium 2026735 DNRS00000000.1 Bac0011500 MAG TPA_asm: Porphyromonadaceae bacterium Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium 2049046 DNRU00000000.1 Bac0011501 MAG TPA_asm: Clostridiales bacterium Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium No 1 Anaerobic Chemoheterotroph caeca; crops 1898207 DNSW00000000.1 Bac0011502 MAG TPA_asm: Cytophagales bacterium Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagales bacterium 2053541 DNTA00000000.1 Bac0011503 MAG TPA_asm: Terrisporobacter hibernicus Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Terrisporobacter Terrisporobacter hibernicus 2813371 DNVD00000000.1 Bac0011504 MAG TPA_asm: Prevotella sp. "Prevotella sp. (MAG TPA_asm) is a Gram-negative, nonsporulating bacterium characterized by its occurrence as single cells. This species thrives in anaerobic environments, making it well-suited for life within the animal intestinal microflora, where it plays a role in the complex ecosystem of gut microbiota. As a chemoheterotroph, Prevotella sp. utilizes organic compounds as both carbon and energy sources, reflecting its adaptation to nutrient-rich environments within the intestines of host organisms.↵↵The optimal growth temperature for Prevotella sp. is approximately 37.0°C, aligning with the physiological conditions of the mammalian gut. This temperature preference suggests that Prevotella sp. is well-adapted to the internal environment of warm-blooded animals, where it may contribute to various metabolic processes, including the fermentation of dietary fibers and proteins.↵↵The presence of Prevotella sp. in the intestinal microflora highlights its potential role in maintaining gut health and influencing host metabolism. Its metabolic activities may contribute to the production of short-chain fatty acids, which are important for gut epithelial health and immune function. Understanding the specific contributions of Prevotella sp. to gut ecology could provide insights into the complex interactions within the microbiome and their implications for host health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. Negative No 1 Anaerobic 37 Chemoheterotroph Animal Intestinal Microflora Singles Nonsporulating 59823 DNVV00000000.1 Bac0011505 MAG TPA_asm: Ruminococcus sp. "Ruminococcus sp. (MAG TPA_asm) is a Gram-positive, nonsporulating coccus that thrives as a chemoheterotroph within the anaerobic environments of animal intestinal microflora. This microbe is characterized by its spherical shape, which is typical of many cocci, and its metabolic adaptation allows it to utilize organic compounds derived from host digestion as an energy source.↵↵As a member of the intestinal microbiome, Ruminococcus sp. plays a significant role in the fermentation processes occurring in the gut, contributing to the breakdown of complex carbohydrates and fibers that are not digestible by the host. This fermentation not only aids in nutrient absorption but also produces short-chain fatty acids, which are beneficial for host health. The anaerobic nature of Ruminococcus sp. reflects its adaptation to the oxygen-poor conditions of the intestinal tract, where it coexists with a diverse community of microorganisms.↵↵The presence of Ruminococcus sp. in the gut microbiome underscores the intricate relationships between gut bacteria and their animal hosts, highlighting the importance of these microbes in digestive health and overall metabolic processes. Understanding the functional roles of such microbes can provide insights into their contributions to gut homeostasis and their potential implications in animal health and nutrition." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. Positive Cocci No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora Nonsporulating 41978 DNWH00000000.1 Bac0011506 MAG TPA_asm: Acetobacteraceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacteraceae bacterium 1909293 DNXO00000000.1 Bac0011507 MAG TPA_asm: Gammaproteobacteria bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium 1913989 DNYN00000000.1 Bac0011508 MAG TPA_asm: Parvularcula sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Parvularculales Parvularculaceae Parvularcula Parvularcula sp. 1979207 DNZB00000000.1 Bac0011509 MAG TPA_asm: Bacillota bacterium Bacillati Bacillota Bacillota bacterium 1879010 DNZM00000000.1 Bac0011510 MAG TPA_asm: Pseudomonas sp. "Pseudomonas sp. MAG TPA_asm is a Gram-negative, rod-shaped bacterium that thrives in diverse environments, including dental plaque, fresh water, marine ecosystems, and various terrestrial habitats such as the rhizosphere of common reeds, soils, and the phyllosphere. This microbe exhibits an aerobic metabolism, indicating its reliance on oxygen for energy production.↵↵The adaptability of Pseudomonas sp. MAG TPA_asm to both aquatic and terrestrial habitats underscores its ecological versatility. In dental plaque, it may play a role in oral microbial communities, while its presence in soils and on plant surfaces suggests potential interactions with plant rhizospheres, possibly influencing nutrient cycling or plant health. Additionally, the bacterium’s occurrence in nasal discharge points to its involvement in the microbiota of mammals, which may have implications for understanding microbial dynamics in various body sites.↵↵Overall, the wide distribution of Pseudomonas sp. MAG TPA_asm across different environments highlights its ecological importance and suggests that it may contribute to various biogeochemical processes, particularly in nutrient-rich habitats. This versatility positions it as a significant player in both microbial interactions and ecosystem functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. negative Rod 1 aerobic dental plaque; Fresh water; Marine; nasal discharge; phyllosphere; rhizosphere; rhizosphere of common reeds; soils; tongue surface 306 DOAD00000000.1 Bac0011511 MAG TPA_asm: Culturomica sp. Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Culturomica Culturomica sp. 1926652 DOED00000000.1 Bac0011512 MAG TPA_asm: Advenella kashmirensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Advenella Advenella kashmirensis 310575 DOEK00000000.1 Bac0011513 MAG TPA_asm: Alphaproteobacteria bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium 1913988 DOFU00000000.1 Bac0011514 MAG TPA_asm: Halomonas sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. denitritation bioreactor; Marine 1486246 DOGL00000000.1 Bac0011515 MAG TPA_asm: Phycisphaerales bacterium Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaerales bacterium 2052180 DOHB00000000.1 Bac0011516 MAG TPA_asm: Chryseobacterium sp. "Chryseobacterium sp. MAG TPA_asm is a Gram-negative bacterium primarily found in aquatic environments and soil. This microbe is characterized by its unique adaptations to these habitats, which may facilitate its survival and metabolic functions in diverse ecological niches. Members of the genus Chryseobacterium are generally known for their saprophytic lifestyle, potentially playing a role in nutrient cycling by decomposing organic matter in their environments.↵↵The aquatic and soil habitats of Chryseobacterium sp. MAG TPA_asm suggest that it may contribute to the microbial diversity and function within these ecosystems. Its Gram-negative cell wall structure typically confers additional resistance to certain environmental stresses, which may enhance its survivability in fluctuating conditions commonly encountered in soil and water.↵↵This bacterium's presence in both aquatic and terrestrial environments underscores its potential ecological versatility. Given the diverse array of interactions that microorganisms can have with their surroundings, Chryseobacterium sp. MAG TPA_asm may engage in symbiotic relationships or play roles in biogeochemical processes. Further research could illuminate its specific ecological functions and interactions within the microbiome of aquatic and soil ecosystems, highlighting its importance in maintaining environmental health and stability." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. negative aquatic origin; soil 1871047 DOHX00000000.1 Bac0011517 MAG TPA_asm: Desulfobacter sp. Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter sp. 2294 DOMX00000000.1 Bac0011518 MAG TPA_asm: Jeotgalicoccus sp. Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Jeotgalicoccus Jeotgalicoccus sp. 1871619 DONT00000000.1 Bac0011519 MAG TPA_asm: Thalassospira lucentensis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira lucentensis 168935 DOOG00000000.1 Bac0011520 MAG TPA_asm: Proteiniclasticum sp. Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Proteiniclasticum Proteiniclasticum sp. 2053595 DOPX00000000.1 Bac0011521 MAG TPA_asm: Brevibacillus sp. "MAG TPA_asm, classified as Brevibacillus sp., is a rod-shaped bacterium notable for its distinctive morphology and potential applications in various biotechnological fields. This organism is characterized by its robust cellular structure, typical of the Bacilli class, which may contribute to its resilience in diverse environments.↵↵The rod shape of Brevibacillus sp. is significant as it often influences the organism's motility, nutrient uptake, and interaction with its surroundings. While the specific metabolic pathways and ecological roles of MAG TPA_asm are not detailed, members of the Brevibacillus genus are typically known for their ability to degrade complex organic materials. This trait suggests potential utility in bioremediation processes or agricultural applications where organic matter breakdown is required.↵↵Moreover, the rod-shaped configuration may enhance the bacterium's surface area-to-volume ratio, which can be advantageous for nutrient absorption and cellular efficiency. As a member of the Brevibacillus genus, MAG TPA_asm may also play a role in soil health and plant growth through its interactions with soil microbiomes.↵↵In summary, while specific traits and environmental interactions of MAG TPA_asm remain to be fully elucidated, its rod shape positions it favorably for involvement in ecological processes such as organic matter decomposition, potentially contributing to nutrient cycling and ecosystem sustainability." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus sp. Rod 1882945 DOTK00000000.1 Bac0011522 MAG TPA_asm: Aerococcaceae bacterium Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcaceae bacterium 2053495 DOTN00000000.1 Bac0011523 MAG TPA_asm: Halomonas campaniensis Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas campaniensis 213554 DOTR00000000.1 Bac0011524 MAG TPA_asm: Holosporales bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Holosporales Holosporales bacterium 2053559 DPDA00000000.1 Bac0011525 MAG TPA_asm: Flavobacterium sp. "Flavobacterium sp. MAG TPA_asm is a Gram-negative bacterium characterized by its aerobic metabolic requirements. This species has been identified in two distinct habitats: nasal discharge and natural springs, suggesting a degree of ecological versatility. The presence of Flavobacterium sp. in nasal discharge indicates potential associations with the mucosal surfaces of animals, while its occurrence in natural springs hints at its adaptability to aquatic environments.↵↵As a member of the Flavobacteriaceae family, Flavobacterium sp. may play a role in the degradation of organic materials within its habitats, contributing to nutrient cycling in both terrestrial and aquatic ecosystems. Its Gram-negative cell wall structure implies that it possesses an outer membrane containing lipopolysaccharides, which may influence its interactions with other microbial communities and its resilience to environmental stresses.↵↵Further studies could elucidate the physiological adaptations that allow Flavobacterium sp. to thrive in diverse ecological niches, as well as its potential interactions with other microbial taxa in both the nasal environment and freshwater systems. Understanding these dynamics may provide insights into the roles of such bacteria in maintaining ecosystem health and stability." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. negative aerobic nasal discharge; natural spring 239 DPDB00000000.1 Bac0011526 MAG TPA_asm: Cyanobacteria bacterium UBA11049 Bacillati Cyanobacteriota Cyanobacteria bacterium UBA11049 2055787 DPEI00000000.1 Bac0011527 MAG TPA_asm: Psychrobacter sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. 56811 DPFN00000000.1 Bac0011528 MAG TPA_asm: Vibrio sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. decomposing feathers at a poultry processing plant 678 DPFO00000000.1 Bac0011529 MAG TPA_asm: Oceanospirillaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Oceanospirillaceae bacterium 1899355 DPHB00000000.1 Bac0011530 MAG TPA_asm: Butyricimonas sp. Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas sp. 1969738 DPHQ00000000.1 Bac0011531 MAG TPA_asm: Balneola sp. Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp. 2024824 DPIT00000000.1 Bac0011532 MAG TPA_asm: Rheinheimera sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sp. nasal discharge 1869214 DPJG00000000.1 Bac0011533 MAG TPA_asm: Paracoccaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccaceae bacterium 1904441 DPOI00000000.1 Bac0011534 MAG TPA_asm: Helicobacter sp. Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 218 DPRV00000000.1 Bac0011535 MAG TPA_asm: Candidatus Latescibacterota bacterium Pseudomonadati Candidatus Latescibacterota Candidatus Latescibacterota bacterium 2053570 DPVW00000000.1 Bac0011536 MAG TPA_asm: Anaerolineae bacterium Bacillati Chloroflexota Anaerolineae Anaerolineae bacterium 2052143 DPVZ00000000.1 Bac0011537 MAG TPA_asm: Spirochaetia bacterium Pseudomonadati Spirochaetota Spirochaetia Spirochaetia bacterium 2053615 DPXE00000000.1 Bac0011538 MAG TPA_asm: Candidatus Sediminicultor tertius Pseudomonadati Atribacterota Candidatus Phoenicimicrobiia Candidatus Pheonicimicrobiales Candidatus Phoenicimicrobiaceae Candidatus Sediminicultor Candidatus Sediminicultor tertius 3378387 DPXH00000000.1 Bac0011539 MAG TPA_asm: Rhizobium sp. "Rhizobium sp. MAG TPA_asm is a Gram-negative, non-sporulating bacterium that thrives in aerobic conditions, with an optimal growth temperature of 28.0°C. This microbe has been isolated from the rhizosphere of Borj Cedria soil, indicating its association with plant roots, where it likely engages in beneficial interactions with host plants. ↵↵As a member of the Rhizobium genus, this bacterium is expected to play a role in nitrogen fixation, a process that enhances soil fertility and promotes plant growth. Its habitat in the rhizosphere suggests that it may also contribute to the overall health of the soil microbiome, as rhizobacteria are known to influence nutrient cycling and plant health through various mechanisms. ↵↵The non-sporulating nature of Rhizobium sp. MAG TPA_asm implies a reliance on specific environmental conditions for survival and growth, making it particularly sensitive to changes in its habitat. This trait, combined with its aerobic requirement, underscores the importance of oxygen availability and suitable temperature ranges in defining its ecological niche. ↵↵The unique habitat of Borj Cedria soil may further influence the metabolic pathways and interactions of this bacterium, potentially leading to adaptations that enhance its survival in this specific environment. Understanding the traits of Rhizobium sp. MAG TPA_asm can provide insights into the complex relationships between soil microbes and plant health, particularly in Mediterranean ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. negative aerobic 28 Borj cedria soil; rhizosphere Nonsporulating 391 DPXQ00000000.1 Bac0011540 MAG TPA_asm: Lactococcus sp. Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus sp. Amazonian rainforest; various environments 44273 DQAD00000000.1 Bac0011541 MAG TPA_asm: Hyphomonadaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonadaceae bacterium 2026748 DQDY00000000.1 Bac0011542 MAG TPA_asm: Anabaena sp. UBA12330 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena sp. UBA12330 2055756 DQEB00000000.1 Bac0011543 MAG TPA_asm: Lactococcus garvieae "Lactococcus garvieae is a Gram-positive bacterium characterized as a facultative anaerobe, capable of thriving in diverse environments including fresh water, marine habitats, and in the gastrointestinal tracts of various animals, as evidenced by its presence in stool samples. This organism is notable for its ability to adapt to varying oxygen levels, allowing it to occupy both oxygen-rich and oxygen-poor environments effectively. ↵↵The ecological versatility of Lactococcus garvieae suggests its potential role in different microbial communities, particularly in freshwater and marine ecosystems where it may contribute to nutrient cycling and organic matter decomposition. Its presence in the stool indicates a symbiotic relationship within the gut microbiota of host organisms, possibly aiding in digestion or serving as a competitive inhabitant against pathogenic microbes. ↵↵Given its adaptability and diverse habitats, Lactococcus garvieae may play a significant role in the microbiomes of aquatic environments and host organisms, highlighting its importance in both ecological interactions and potential applications in biotechnology. Further research into its metabolic pathways and interactions with other microbes could reveal additional ecological functions and contributions to microbial diversity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae positive facultative anaerobe Fresh water; Marine; stool 1363 DQHM00000000.1 Bac0011544 Armatimonadetes bacterium GXS Bacillati Armatimonadota Armatimonadetes bacterium GXS 1661582 FAOT00000000.1 Bac0011545 Frankia sp. DSM 45899 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Parafrankia Parafrankia irregularis 795642 FAOZ00000000.1 Bac0011546 Leuconostoc inhae strain PL111 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc inhae 178001 FBTU00000000.1 Bac0011547 Agrobacterium tumefaciens str. CFBP 5621 "Agrobacterium tumefaciens str. CFBP 5621 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. As an aerobic organism, it requires oxygen for its metabolic processes and can inhabit a variety of environments, suggesting a versatile ecological adaptability. This strain, like other members of the Agrobacterium genus, is well-known for its role in plant interactions, particularly through the transfer of DNA to plant cells, a process that can lead to tumor formation in plants.↵↵The ability of A. tumefaciens to survive in multiple habitats may contribute to its widespread presence in agricultural settings, where it can interact with various plant species. The optimal growth temperature indicates a preference for moderate environmental conditions, common in temperate climates, which may facilitate its proliferation in diverse ecosystems. ↵↵Understanding the growth characteristics and ecological preferences of A. tumefaciens str. CFBP 5621 can provide insights into its potential applications in biotechnology, particularly in genetic engineering and plant transformation techniques. The bacterium's adaptability to various habitats underscores its significance in ecological studies, where it may play a role in microbial community dynamics and plant-microbe interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1183422 FBWF00000000.1 Bac0011548 Agrobacterium fabrum str. J-07 "Agrobacterium fabrum strain J-07 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements and optimal growth temperature of 25.0°C. This microbe is part of a diverse group of bacteria, exhibiting versatility in its habitat, as it has been identified in multiple environmental contexts.↵↵The Gram-negative classification indicates that A. fabrum str. J-07 possesses a thin peptidoglycan layer surrounded by an outer membrane, which contributes to its structural integrity and potential responses to environmental stresses. Its rod shape may facilitate motility and colonization in various habitats, allowing it to thrive in diverse ecological niches.↵↵As an aerobe, A. fabrum str. J-07 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability varies. This dependency highlights the microbe's role in aerobic processes within its ecological contexts, potentially participating in nutrient cycling and interactions with other microorganisms.↵↵The adaptability of A. fabrum str. J-07 to multiple habitats suggests that it may be involved in complex ecological interactions, possibly influencing plant health or soil dynamics through its metabolic activities. Understanding the specific ecological roles and interactions of this strain could provide insights into its contributions to microbial community structure and function in various environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium fabrum Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1183433 FBWI00000000.1 Bac0011549 Agrobacterium genomosp. 6 str. NCPPB 925 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. NCPPB 925 1631629 FBWM00000000.1 Bac0011550 Clostridium sp. C105KSO14 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. C105KSO14 1776046 FBWO00000000.1 Bac0011551 Serratia marcescens strain 2880STDY5683025 "Serratia marcescens strain 2880STDY5683025 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is classified as a facultative anaerobe. This strain is nonsporulating, which indicates that it does not form spores under environmental stress. The optimal growth temperature for this strain is 37.0°C, suggesting its adaptation to warm-blooded hosts or environments that mimic such thermal conditions.↵↵Serratia marcescens is known to inhabit a variety of ecological niches, which may include both natural and artificial environments. Its metabolic versatility as a facultative anaerobe allows it to thrive in both oxygen-rich and oxygen-poor settings, further broadening its potential habitats. This adaptability likely contributes to its persistence in diverse ecosystems, ranging from soil to water, and even in association with plants and animals.↵↵The ability of Serratia marcescens strain 2880STDY5683025 to utilize a range of organic compounds as energy sources enhances its ecological resilience. This strain's characteristics suggest it plays a role in the microbial community dynamics within its habitats, potentially influencing nutrient cycling and interactions with other microorganisms. Overall, the traits of this strain underscore its ecological significance and adaptability in varying environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 FCGE00000000.1 Bac0011552 Agrobacterium tumefaciens str. CFBP 5771 "Agrobacterium tumefaciens str. CFBP 5771 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and thrives optimally at a temperature of 25.0°C. This microbe is known for its versatility, as it can inhabit multiple environments, which may contribute to its ecological adaptability and resilience in various ecosystems.↵↵As a member of the Agrobacterium genus, this strain is part of a group of bacteria recognized for their unique interactions with plant hosts, particularly in the context of plant transformation. While the specific pathogenicity or ecological role of str. CFBP 5771 has not been detailed, the general behaviors of Agrobacterium species suggest a capacity for influencing plant health and growth, often through mechanisms such as horizontal gene transfer.↵↵The ability to thrive in diverse habitats indicates that Agrobacterium tumefaciens str. CFBP 5771 may play a significant role in soil microbiomes, potentially participating in nutrient cycling and influencing plant-microbe interactions. Its aerobic nature suggests a dependence on oxygen-rich environments, which could facilitate its metabolic processes and interactions within its ecological niche. Overall, the organism exemplifies the complex relationships between microbes and their environments, highlighting the importance of microbial diversity in ecological dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 FCNM00000000.1 Bac0011553 Agrobacterium genomosp. 9 str. Hayward 0363 strain Hayward0363 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium salinitolerans 1183413 FCNQ00000000.1 Bac0011554 Alistipes sp. CHKCI003 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. CHKCI003 1780376 FCNT00000000.1 Bac0011555 Burkholderia telluris Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia telluris 326475 FCNZ00000000.2 Bac0011556 Burkholderia sordidicola Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia sordidicola 196367 FCOC00000000.2 Bac0011557 Burkholderia catudaia type strain LMG 29318 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia catudaia 1777136 FCOF00000000.2 Bac0011558 Burkholderia temeraria type strain LMG 29319 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia temeraria 1777137 FCOI00000000.2 Bac0011559 Burkholderia terrestris Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia terrestris 1226301 FCOL00000000.2 Bac0011560 Burkholderia calidae type strain LMG 29321 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia calidae 1777139 FCOX00000000.2 Bac0011561 Streptococcus pneumoniae strain 2842STDY5881852 "Streptococcus pneumoniae strain 2842STDY5881852 is a Gram-positive cocci bacterium that typically exhibits a cellular arrangement of chains and pairs. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments. Streptococcus pneumoniae is known to inhabit various ecological niches, although specific habitat details for this strain are not specified.↵↵The ability of strain 2842STDY5881852 to grow under diverse oxygen conditions may enable it to occupy a range of environments, potentially contributing to its adaptability in different ecological contexts. This characteristic suggests that the strain could play a role in various microbial communities, where it may interact with other microorganisms in both aerobic and anaerobic settings. Furthermore, the chain and pair arrangement of its cells may influence its interactions with host organisms, as well as its environmental resilience. Understanding the specific habitats and ecological roles of this strain could provide valuable insights into its biological behavior and potential applications in microbiology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FCYU00000000.1 Bac0011562 Neisseria meningitidis strain 2842STDY5881093 "Neisseria meningitidis strain 2842STDY5881093 is a Gram-negative bacterium characterized by its cocci shape and arrangement in pairs, typical of the Neisseria genus. This strain thrives optimally at a temperature of 35.0°C, which aligns with the physiological conditions of the human body, suggesting its adaptation to a host-associated habitat. As an aerobe, N. meningitidis requires oxygen for growth, indicating its metabolic reliance on aerobic respiration.↵↵The ecological niche of this strain is predominantly linked to human hosts, where it is often found in the nasopharyngeal region. The pair arrangement of the cocci is a distinctive morphological feature that facilitates its identification in clinical settings. Given its optimal growth temperature and aerobe status, strain 2842STDY5881093 may play a role in the complex microbial communities residing in human mucosal surfaces, potentially influencing both microbial interactions and host immune responses. Understanding the specific traits of this strain can provide insights into its ecological role and its potential impact on human health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 FESW00000000.1 Bac0011563 Neisseria meningitidis strain 2842STDY5881531 "Neisseria meningitidis strain 2842STDY5881531 is a Gram-negative coccal bacterium typically found in pairs, exhibiting a characteristic arrangement that is common among members of the Neisseria genus. This strain thrives optimally at a temperature of 35.0°C, which aligns with its habitat in host-associated environments, particularly within the mucosal surfaces of the human nasopharynx. As an aerobe, N. meningitidis strain 2842STDY5881531 requires oxygen for its metabolic processes, reflecting the organism's adaptation to oxygen-rich environments within its host.↵↵The ability of this strain to grow in pairs may facilitate its colonization and persistence in host tissues, potentially influencing its interactions with the host immune system and its ecological niche. The specific temperature preference suggests a refined adaptation to human physiology, as the human body maintains a core temperature around this optimal level. This raises interesting questions regarding the ecological dynamics of N. meningitidis within the human microbiome and its potential for transmission, particularly under varying environmental conditions. Overall, the traits of Neisseria meningitidis strain 2842STDY5881531 highlight its specialized adaptations to life within a host, suggesting a complex interplay between the microbe and its human environment." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 FFEF00000000.1 Bac0011564 Streptococcus pneumoniae strain 2245STDY5608920 "Streptococcus pneumoniae strain 2245STDY5608920 is a Gram-positive coccus characterized by its arrangement in chains or pairs. This strain exhibits optimal growth at a temperature of 30.0°C and is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic conditions. S. pneumoniae is known to inhabit multiple environments, which may include diverse niches within the human microbiome as well as other ecological habitats.↵↵The cellular morphology and arrangement of this strain suggest a potential for complex interactions within its habitat, as the chains and pairs of cocci may facilitate communication and nutrient exchange among cells. Additionally, the ability to grow in varying oxygen levels positions this strain to exploit a wide range of ecological niches, allowing it to adapt to fluctuating environmental conditions.↵↵Given its physiological traits, Streptococcus pneumoniae strain 2245STDY5608920 may play a significant role in microbial communities, where it can contribute to both symbiotic and competitive interactions. Understanding the ecological versatility of this strain may provide insights into its overall impact on community dynamics and its potential role in health and disease within its environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FFRD00000000.2 Bac0011565 Streptococcus pneumoniae strain 2245STDY5608946 "Streptococcus pneumoniae strain 2245STDY5608946 is a Gram-positive bacterium characterized by its cocci shape and tendency to arrange in chains and pairs. This strain thrives optimally at a temperature of 30.0°C, suggesting a potential preference for moderate environmental conditions. As a facultative anaerobe, S. pneumoniae can grow in both the presence and absence of oxygen, allowing it to inhabit diverse environments where oxygen availability may fluctuate.↵↵The habitat of this strain is described as multiple, indicating its adaptability to various ecological niches. This versatility may contribute to the strain's resilience in different settings, potentially influencing its interactions with other microbial communities and its survival under varying environmental stresses.↵↵In summary, the combination of its Gram-positive nature, cocci morphology, specific growth temperature, and facultative anaerobic capabilities positions Streptococcus pneumoniae strain 2245STDY5608946 as a microbe with significant ecological adaptability. This adaptability may play a role in its ecological success, allowing it to persist in environments that experience dynamic changes in oxygen levels and temperature." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FFRZ00000000.2 Bac0011566 Streptococcus pneumoniae strain 2245STDY5608965 "Streptococcus pneumoniae strain 2245STDY5608965 is a Gram-positive coccus characterized by its arrangement in chains and pairs. This bacterium thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen levels in its environment. ↵↵The strain is found in multiple habitats, indicating its ecological versatility and potential interactions within various microbial communities. Its ability to grow in both aerobic and anaerobic conditions suggests a significant adaptability, which may facilitate its survival in diverse environments ranging from the human respiratory tract to other ecological niches.↵↵Given its structural traits and growth characteristics, Streptococcus pneumoniae strain 2245STDY5608965 may play a role in complex microbial ecosystems, where its interactions with other microorganisms and host organisms could influence both community dynamics and nutrient cycling. This strain exemplifies the ecological flexibility inherent in many Streptococcus species, contributing to their widespread presence in different habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FFSN00000000.2 Bac0011567 Streptococcus pneumoniae strain 2245STDY5608980 "Streptococcus pneumoniae strain 2245STDY5608980 is a Gram-positive coccus that typically forms chains and pairs. This strain thrives at an optimal temperature of 30.0°C, indicating a preference for moderate warmth. As a facultative anaerobe, it possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, which may facilitate its survival in diverse habitats.↵↵The capability of S. pneumoniae to adapt to varying oxygen levels suggests a potential for colonization in different ecological niches, including those with fluctuating oxygen availability. Its chain and pair arrangement may play a role in its interactions with host tissues and other microorganisms, contributing to its ecological dynamics. Further investigations into the specific environments where strain 2245STDY5608980 is found could provide insights into its ecological role and potential interactions within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FFTC00000000.2 Bac0011568 Streptococcus pneumoniae strain 2245STDY5609151 "Streptococcus pneumoniae strain 2245STDY5609151 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 30.0°C, indicating a preference for moderate environmental conditions. As a facultative anaerobe, it is capable of growth in both the presence and absence of oxygen, allowing it to adapt to various habitats. ↵↵The versatility of S. pneumoniae strain 2245STDY5609151 in terms of its habitat suggests a capacity for survival in diverse ecological niches, potentially including both human hosts and environmental reservoirs. Such adaptability may contribute to the strain's ability to compete with other microorganisms and exploit varying resources in its environment. Understanding the ecological dynamics of this strain may provide insights into its interactions within microbial communities and its responses to environmental stresses." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FHIE00000000.2 Bac0011569 Streptococcus pneumoniae strain 2245STDY5699039 "Streptococcus pneumoniae strain 2245STDY5699039 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. This strain demonstrates optimal growth at a temperature of 30.0°C and is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. ↵↵Streptococcus pneumoniae is known to inhabit various ecological niches, suggesting a versatile lifestyle that allows it to adapt to multiple habitats, including those in human hosts and diverse environmental contexts. The strain's coccoid morphology and chain-like arrangement may confer advantages in colonization and persistence in these varied habitats. ↵↵The facultative anaerobic nature of this strain suggests that it can efficiently utilize available oxygen when present but can also switch to fermentation or anaerobic respiration when oxygen levels are low. This metabolic flexibility could enhance its survival in fluctuating environments, potentially contributing to its ecological success and adaptability.↵↵Understanding the traits of Streptococcus pneumoniae strain 2245STDY5699039 can provide insights into its potential interactions within microbial communities and its responses to environmental changes, particularly in habitats where oxygen availability is variable." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FHIX00000000.2 Bac0011570 Streptococcus pneumoniae strain 2245STDY5699079 "Streptococcus pneumoniae strain 2245STDY5699079 is a Gram-positive coccus that typically exhibits a cellular arrangement in chains and pairs. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments. ↵↵The versatile habitat of S. pneumoniae strain 2245STDY5699079 suggests a capacity to adapt to various ecological niches, potentially contributing to its survival and proliferation in diverse environments. The ability to form chains and pairs may play a role in its interactions with host organisms and its persistence in different habitats. Understanding the growth conditions and morphological characteristics of this strain could provide insights into its ecological roles, such as its involvement in microbial communities or its potential impact on host microbiomes. Further research may elucidate the ecological significance of its adaptability and cellular organization in natural and clinical settings." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FHKI00000000.2 Bac0011571 Streptococcus pneumoniae strain 2245STDY5699081 "Streptococcus pneumoniae strain 2245STDY5699081 is a Gram-positive coccus that typically arranges itself in chains and pairs. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth for this strain occurs at a temperature of 30.0°C, indicating a preference for moderate thermal conditions that may influence its habitat selection.↵↵The ecological versatility of S. pneumoniae strain 2245STDY5699081 suggests that it can inhabit a range of environments, potentially including both human and environmental sources. Its ability to grow in various habitats enhances its adaptability and may contribute to its survival and persistence in diverse ecological niches. Understanding the growth requirements and environmental adaptations of this strain could provide insights into its role within microbial communities and its interactions with other organisms in its habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FHKK00000000.2 Bac0011572 Streptococcus pneumoniae strain 2245STDY5699088 "Streptococcus pneumoniae strain 2245STDY5699088 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 30.0°C, indicating a potential preference for environments that are moderately warm. As a facultative anaerobe, it possesses the ability to grow in both aerobic and anaerobic conditions, which may enhance its survival in diverse habitats.↵↵The ability of S. pneumoniae to adapt to varying oxygen levels suggests that it can exploit a range of ecological niches, potentially including those with fluctuating oxygen availability. The presence of this strain in multiple habitats indicates versatility, which may be linked to its genetic and metabolic adaptability. Further exploration of its ecological roles could reveal insights into its interactions with other microorganisms and its contributions to microbial communities. Understanding the environmental resilience and adaptability of S. pneumoniae strain 2245STDY5699088 may also provide valuable information for future studies on microbial ecology and the dynamics of bacterial populations in various ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FHKP00000000.2 Bac0011573 Streptococcus pneumoniae strain 2245STDY5982508 "Streptococcus pneumoniae strain 2245STDY5982508 is a Gram-positive bacterium characterized by its coccoid shape and tendency to form chains and pairs. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. Its habitat is noted to be diverse, suggesting a potential adaptability to different ecological niches.↵↵The arrangement of cocci in chains and pairs is a distinctive morphological feature of this strain, which is consistent with the typical characteristics of the Streptococcus genus. The facultative anaerobic nature of strain 2245STDY5982508 indicates its ability to switch between aerobic respiration and fermentation, providing metabolic flexibility that may enhance its survival in fluctuating environmental conditions.↵↵Understanding the ecological implications of this strain's traits can provide insights into its role in various habitats. The adaptability to multiple environments, combined with its optimal growth at moderate temperatures, suggests that Streptococcus pneumoniae strain 2245STDY5982508 may play a significant role in microbial communities across diverse ecosystems, potentially influencing nutrient cycling and interactions with other microorganisms. Such characteristics warrant further investigation to elucidate the ecological dynamics in which this strain participates." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FHUD00000000.2 Bac0011574 Streptococcus pneumoniae strain 2245STDY5982517 "Streptococcus pneumoniae strain 2245STDY5982517 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 30.0°C, which suggests a preference for temperate environments. As a facultative anaerobe, S. pneumoniae strain 2245STDY5982517 can grow in both the presence and absence of oxygen, allowing it to inhabit a variety of ecological niches.↵↵The ability of this strain to adapt to different oxygen levels indicates its potential versatility in various habitats, including those that may be oxygen-limited. This characteristic may facilitate its survival in diverse environments, from the human respiratory tract to other ecological settings. The presence of this strain in multiple habitats highlights the species' ecological plasticity and suggests its ability to play significant roles in microbial communities, particularly in terms of competition and nutrient cycling. Understanding the ecological dynamics of S. pneumoniae strain 2245STDY5982517 could provide valuable insights into its interactions with other microorganisms and its adaptation strategies in fluctuating environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FHUK00000000.2 Bac0011575 Streptococcus suis strain LSS48 "Streptococcus suis strain LSS48 is a Gram-positive coccus that exhibits a characteristic arrangement of cells in chains, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to the warm-blooded hosts it might encounter. As a facultative anaerobe, S. suis strain LSS48 is capable of growth in both aerobic and anaerobic environments, which may confer advantages in various ecological niches, particularly those associated with host-associated microbiomes or environments with fluctuating oxygen levels.↵↵The habitat of S. suis strain LSS48 is described as specialized, indicating that this microbe may occupy specific ecological roles or environments that differ from more ubiquitous microbial species. This specialization may influence its interactions with other microorganisms and its potential utilization of available resources. Understanding the ecological context of S. suis strain LSS48 could provide insights into its survival strategies and potential roles within its habitat, particularly in relation to host organisms and the dynamics of microbial communities.↵↵Overall, the traits of S. suis strain LSS48 suggest a highly adaptive organism capable of thriving in particular niches, which may play a significant role in its ecological interactions and the overall balance of microbial populations within its specialized habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIGO00000000.1 Bac0011576 Streptococcus suis strain LSS40 "Streptococcus suis strain LSS40 is a Gram-positive coccus that typically arranges itself in chains, pairs, or as single cells. This bacterium thrives optimally at a temperature of 37.0°C, indicating its adaptation to warm-blooded hosts. As a facultative anaerobe, S. suis strain LSS40 is capable of growth in both aerobic and anaerobic environments, which may enhance its ecological versatility. ↵↵The habitat of S. suis strain LSS40 is described as specialized, suggesting a particular ecological niche, possibly associated with specific hosts or environments where it can effectively compete and proliferate. The ability to grow in varied oxygen conditions may facilitate its survival in diverse microenvironments within its habitat.↵↵In summary, the traits of Streptococcus suis strain LSS40 underscore its adaptability to specific ecological niches and its potential role in complex microbial communities. Understanding these traits may provide insights into its interactions within its habitat and the dynamics of microbial populations." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIGR00000000.1 Bac0011577 Streptococcus suis strain LSS49 "Streptococcus suis strain LSS49 is a Gram-positive coccus characterized by its arrangement in chains, pairs, and singles. This facultative anaerobe thrives optimally at 37.0°C, which corresponds to the physiological temperature of warm-blooded hosts, suggesting an adaptation to a specialized habitat. ↵↵The cellular morphology of S. suis strain LSS49, with its distinctive cocci shape, may play a crucial role in its interaction with the host environment. The ability to exist in various arrangements could facilitate its colonization and persistence within specific niches, possibly influencing its ecological interactions. As a facultative anaerobe, this strain can adapt to varying oxygen levels, allowing it to thrive in both aerobic and anaerobic environments. ↵↵The specialized habitat of S. suis strain LSS49 implies potential associations with specific host species or environmental conditions, although the exact nature of these associations requires further investigation. Understanding the ecological dynamics of this strain may provide insights into its role within microbial communities, particularly in contexts where it may influence host health or contribute to microbial diversity. The adaptability of S. suis strain LSS49 to different oxygen conditions and its optimal growth temperature could also inform studies on microbial resilience and competition within its ecological niche." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIGV00000000.1 Bac0011578 Streptococcus suis strain LSS44 "Streptococcus suis strain LSS44 is a Gram-positive coccus that typically arranges itself in chains, pairs, or as single cells. This bacterium thrives optimally at a temperature of 37.0 °C, suggesting a preference for conditions similar to those found in warm-blooded hosts. As a facultative anaerobe, S. suis strain LSS44 can grow in both the presence and absence of oxygen, indicating metabolic versatility that may enhance its survival in diverse environments.↵↵The habitat of S. suis strain LSS44 is classified as specialized, which may point to specific ecological niches that it occupies, potentially related to its host associations. While the precise ecological interactions and roles of this strain remain undefined, its characteristics suggest an adaptation to environments where it can exploit specific resources or conditions, possibly linked to host organisms. Further studies into the unique habitat preferences and metabolic pathways of S. suis strain LSS44 could yield insights into its ecological role and potential interactions within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIGZ00000000.1 Bac0011579 Streptococcus suis strain LSS78 "Streptococcus suis strain LSS78 is a Gram-positive cocci characterized by its arrangement in chains, pairs, and singles. This bacterium exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 37.0°C, suggesting a preference for conditions similar to those found in warm-blooded hosts. ↵↵The habitat of Streptococcus suis strain LSS78 is described as specialized, indicating that it may inhabit specific niches within animal hosts or environments conducive to its growth. This specificity highlights the potential for unique interactions with host organisms, which might influence its survival and proliferation.↵↵The combination of its Gram-positive cell wall structure and the cocci morphology is typical of the Streptococcus genus, which often plays significant roles in various ecological contexts, ranging from commensal relationships to pathogenic interactions. Further studies could illuminate the ecological dynamics of strain LSS78, particularly how its specialized habitat influences its role within microbial communities and its interactions with potential hosts. Understanding these interactions may provide insights into its ecological significance and potential implications for animal health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIIB00000000.1 Bac0011580 Streptococcus suis strain LSS96 "Streptococcus suis strain LSS96 is a Gram-positive coccus that typically arranges itself in chains, pairs, and singles. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is optimally grown at a temperature of 37.0°C, which suggests an adaptation to the physiological conditions commonly found in warm-blooded hosts.↵↵The habitat of S. suis strain LSS96 is classified as specialized, indicating a preference for specific ecological niches that may influence its interactions within microbial communities. The ability of this strain to form chains and pairs may play a role in its survival and colonization strategies, potentially facilitating adherence to surfaces or other cells in its habitat.↵↵Overall, the traits of S. suis strain LSS96 suggest that it may possess unique physiological adaptations that enable it to occupy specialized environments, perhaps reflecting a relationship with its hosts or specific ecological niches. Further studies may elucidate the implications of these traits for its ecological role and interactions with other microorganisms." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIIS00000000.1 Bac0011581 Streptococcus suis strain LSS99 "Streptococcus suis strain LSS99 is a Gram-positive coccus characterized by its arrangement in chains, pairs, and singles. This strain thrives optimally at a temperature of 37.0 °C, a condition that aligns with the physiological temperature of many warm-blooded hosts. As a facultative anaerobe, S. suis strain LSS99 can adapt to varying oxygen levels, allowing it to survive in diverse environments, although its specific habitat is described as specialized.↵↵The ability of S. suis strain LSS99 to exist in both aerobic and anaerobic conditions may confer a competitive advantage in its ecological niche, enabling it to occupy environments where oxygen availability fluctuates. This adaptability is particularly relevant in contexts such as microbial communities within the host or in environments with varying nutrient availability. Furthermore, the chain and pair arrangements suggest a potential for increased cell-to-cell communication and biofilm formation, which could influence its ecological interactions and survival strategies. Overall, Streptococcus suis strain LSS99 exemplifies the versatility of certain bacterial strains in adapting to specialized habitats, highlighting the complex relationships these microbes may have within their ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIIX00000000.1 Bac0011582 Streptococcus suis strain SS993 "Streptococcus suis strain SS993 is a Gram-positive coccus characterized by its tendency to form chains, pairs, and singles. This strain thrives optimally at 37.0°C, indicating a preference for physiological temperatures typical of warm-blooded hosts. As a facultative anaerobe, S. suis strain SS993 can grow in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen conditions in its specialized habitat.↵↵The specialized habitat of S. suis suggests it may occupy niches that are distinct from those of other Streptococcus species, potentially influencing its interactions with host organisms or environmental factors. The ability to maintain growth under diverse oxygen conditions may reflect an evolutionary adaptation that facilitates survival in fluctuating environments within its ecological niche.↵↵Further research into the specific ecological roles and interactions of S. suis strain SS993 could provide valuable insights into its environmental adaptability and potential implications for host-associated dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FILX00000000.1 Bac0011583 Streptococcus suis strain SS997 "Streptococcus suis strain SS997 is a Gram-positive cocci bacterium characterized by its arrangement in chains, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for warm-blooded hosts or environments that mimic such conditions. As a facultative anaerobe, S. suis strain SS997 possesses the capability to grow in both aerobic and anaerobic environments, which may enhance its adaptability to various ecological niches.↵↵The specialized habitat of this strain suggests a specific ecological role, potentially associated with certain animal hosts or environments that provide the necessary conditions for its growth and reproduction. This specialization may also reflect its adaptability to the physiological conditions found within host organisms, which could influence its interactions with the host microbiome.↵↵Understanding the traits of S. suis strain SS997 provides insight into its potential biological interactions and ecological role, particularly in environments that support its growth. The ability to thrive in diverse oxygen levels and the formation of characteristic cellular arrangements may facilitate its survival and adaptability in specific niches, potentially influencing its ecological dynamics within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 FIMB00000000.1 Bac0011584 Streptococcus pneumoniae strain A33096 "Streptococcus pneumoniae strain A33096 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. This strain thrives optimally at 30.0°C and exhibits facultative anaerobic respiration, indicating its ability to grow in both aerobic and anaerobic environments. Streptococcus pneumoniae is known to inhabit diverse habitats, which may include the human respiratory tract and other ecological niches, although specific habitats for strain A33096 are not detailed.↵↵The Gram-positive nature of this bacterium is indicative of its thick peptidoglycan layer, which plays a crucial role in its structural integrity and may influence its interaction with host immune responses. The arrangement of cells in chains and pairs is typical of the genus Streptococcus and can impact the bacterium's ability to colonize and persist in its environments.↵↵Given its facultative anaerobic capability, strain A33096 likely possesses metabolic flexibility that allows it to adapt to varying oxygen levels in its habitat. This adaptability may contribute to its survival in complex ecosystems where oxygen availability fluctuates. Understanding the traits of Streptococcus pneumoniae strain A33096 can provide insights into its ecological role and potential interactions within microbial communities, particularly in environments where competition for resources is intense." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 FIYJ00000000.1 Bac0011585 Campylobacter geochelonis strain RC20 "Campylobacter geochelonis strain RC20 is a Gram-negative rod-shaped bacterium that exhibits characteristics typical of the Campylobacter genus. This strain is part of a diverse group of bacteria known for their association with various environmental and host-associated niches. The Gram-negative nature of C. geochelonis strain RC20 suggests a complex cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature may contribute to the organism's resilience in specific environments.↵↵The rod shape of C. geochelonis strain RC20 is significant as it may influence motility and colonization abilities, potentially allowing it to thrive in various habitats. While the specific ecological roles of this strain remain to be fully elucidated, its classification within the Campylobacter genus indicates a potential for adaptation to microaerophilic conditions, which are often found in various ecological niches, including animal intestines and soil.↵↵Understanding the traits of C. geochelonis strain RC20 could provide insights into its ecological interactions and potential contributions to microbial community dynamics. Further research on this strain may reveal its role in nutrient cycling or its interactions with other microbes in its environment, contributing to our knowledge of microbial diversity and functionality in ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter geochelonis Gram-negative rod 1780362 FIZP00000000.1 Bac0011586 Grimontia sp. 96-237 strain CECT 9029 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Grimontia Grimontia celer 1796497 FIZX00000000.1 Bac0011587 Legionella pneumophila strain 2532STDY5467606 "Legionella pneumophila strain 2532STDY5467606 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, indicating its reliance on organic compounds for energy, and it requires oxygen for growth, categorizing it as aerobic. ↵↵Primarily associated with host environments, L. pneumophila is often found in various aquatic systems, particularly in man-made water systems where it can proliferate under favorable conditions. The organism's ability to thrive in such environments underscores its potential role in biofilm formation and interactions with host organisms, which may contribute to its survival and transmission dynamics.↵↵The specific ecological niche of L. pneumophila strain 2532STDY5467606 highlights its adaptive capabilities, particularly in environments that may replicate its natural habitats, such as cooling towers, hot tubs, and plumbing systems. Understanding these traits is crucial for developing effective management strategies to mitigate the risks associated with this bacterium in human-inhabited environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 FJKL00000000.1 Bac0011588 Enterobacter cloacae strain e1252 "Enterobacter cloacae strain e1252 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This metabolic versatility enables E. cloacae strain e1252 to occupy a variety of habitats, highlighting its adaptability to diverse ecological niches. ↵↵As a member of the Enterobacter genus, this strain likely shares common characteristics with other members of its species, including the ability to ferment carbohydrates and produce gas as a byproduct. The facultative anaerobic nature of E. cloacae strain e1252 suggests that it can utilize oxygen when available for respiration but can switch to fermentation in the absence of oxygen, thus enhancing its survival in fluctuating environmental conditions.↵↵The broad habitat range of E. cloacae strain e1252 may encompass various environments, including soil, water, and potentially association with plant and animal hosts. This adaptability could play a significant role in its ecological interactions, particularly in nutrient cycling and microbial community dynamics. Furthermore, the ability to thrive in multiple habitats underscores the potential for E. cloacae strain e1252 to engage in complex ecological relationships, such as those involving symbiosis or competition with other microorganisms, thus enriching our understanding of microbial diversity and function in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 FJXR00000000.1 Bac0011589 Enterobacter hormaechei strain e1705 "Enterobacter hormaechei strain e1705 is a Gram-negative bacterium that is associated with host organisms, exhibiting facultative anaerobic metabolism. This strain belongs to the genus Enterobacter, which is known for its versatility in various environments, particularly in association with living hosts. As a facultative anaerobe, E. hormaechei strain e1705 can thrive in both aerobic and anaerobic conditions, allowing it to adapt to the varying oxygen levels encountered within biological systems.↵↵The host-associated habitat suggests that E. hormaechei strain e1705 may play a role in the microbial communities found within its host, potentially influencing host health and homeostasis. This adaptability might enable the strain to participate in metabolic interactions with other microbial inhabitants or contribute to nutrient cycling within the host environment. ↵↵The ability of this strain to grow in fluctuating oxygen conditions could provide insights into its ecological role in the gastrointestinal tract or other host-associated niches, where oxygen availability can vary significantly. Understanding the specific interactions and contributions of Enterobacter hormaechei strain e1705 within host-associated ecosystems may yield valuable information about its function in health or disease, highlighting its potential importance in microbiome studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 FKAH00000000.1 Bac0011590 Enterobacter cloacae strain e438 "Enterobacter cloacae strain e438 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain, belonging to the Enterobacter genus, is known to inhabit multiple ecological niches, potentially including soil, water, and various human-associated environments. The versatility in its habitat suggests that E. cloacae strain e438 may play diverse roles in biogeochemical cycles and could be involved in interactions with other microbial communities.↵↵The facultative anaerobic nature of this microbe enables it to adapt to fluctuating oxygen levels, which may contribute to its resilience in various environments. This adaptability may also facilitate its survival in clinical settings or during environmental shifts, where varying nutrient and oxygen availability can influence microbial community dynamics. Overall, Enterobacter cloacae strain e438 exemplifies the adaptability of microorganisms to diverse habitats, highlighting its potential importance in both natural ecosystems and anthropogenic environments. Further studies could elucidate the specific ecological roles and interactions of this strain, enhancing our understanding of its impact on microbial diversity and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 FKED00000000.1 Bac0011591 Enterobacter roggenkampii strain e54 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter roggenkampii 1812935 FKET00000000.1 Bac0011592 Enterobacter hormaechei strain e742 "Enterobacter hormaechei strain e742 is a Gram-negative bacterium characterized as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. This strain is primarily found in host-associated habitats, suggesting a potential relationship with living organisms, including plants and animals. ↵↵As a member of the Enterobacter genus, E. hormaechei has been noted for its metabolic versatility, which likely contributes to its adaptability in varied environments associated with hosts. The facultative anaerobic nature of this strain allows it to thrive in diverse ecological niches, utilizing different metabolic pathways depending on the availability of oxygen. ↵↵The host-associated habitat of Enterobacter hormaechei strain e742 raises questions about its interactions within host microbiomes and its potential roles in nutrient cycling or symbiotic relationships. Understanding these dynamics may provide insights into the ecological functions of Enterobacter species within their respective environments, as well as their contributions to the overall health of the host organisms they inhabit. Further research is warranted to explore these interactions and the potential implications for host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 FKGC00000000.1 Bac0011593 Klebsiella aerogenes strain e1034 "Klebsiella aerogenes strain e1034 is a Gram-negative, facultative anaerobic bacterium primarily associated with host environments. This strain demonstrates a versatile metabolic capability, allowing it to thrive in both aerobic and anaerobic conditions, which may facilitate its survival in diverse host-associated habitats. ↵↵The Gram-negative nature of K. aerogenes strain e1034 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a feature that can influence its interactions with host immune responses. The facultative anaerobic metabolism suggests that this strain can efficiently adapt to varying oxygen levels within host-associated environments, potentially allowing it to exploit different niches depending on the availability of oxygen.↵↵Given its habitat, K. aerogenes strain e1034 may play a role in the microbiota of its host, contributing to various metabolic processes or influencing host health. Understanding the specific ecological roles and metabolic pathways employed by this strain could provide insights into its contributions to host physiology and the dynamics of microbial communities within host-associated environments. Further research may elucidate the complex interactions between K. aerogenes strain e1034 and its host, shedding light on its ecological significance in maintaining microbial homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella aerogenes Negative 1 Facultative anaerobe Mesophilic HostAssociated Free living 548 FKIV00000000.1 Bac0011594 Enterobacter cloacae strain e403 "Enterobacter cloacae strain e403 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This microbial strain is versatile, inhabiting a variety of ecological niches, which may include human-made environments as well as natural ecosystems. ↵↵As a member of the Enterobacter genus, E. cloacae has been widely studied for its metabolic capabilities and adaptability. Its ability to switch between utilizing oxygen and fermentative pathways enhances its survival in fluctuating conditions, potentially contributing to its presence in diverse habitats. The facultative anaerobic nature of strain e403 suggests it can effectively exploit available resources, whether in oxygen-rich or oxygen-poor environments. ↵↵The ecological role of Enterobacter cloacae strain e403 may include participation in nutrient cycling, particularly in environments where organic matter is abundant. Its metabolic versatility could also play a part in the degradation of complex substrates, which is significant in both soil and wastewater contexts. Understanding the ecological and biological functions of such strains can provide insights into their roles in microbial communities and their impact on environmental processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 FKIY00000000.1 Bac0011595 Streptomyces sp. F-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. F-1 463642 FKJI00000000.3 Bac0011596 Pseudomonas sp. 1 R 17 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 1 R 17 1844091 FKLB00000000.1 Bac0011597 Klebsiella michiganensis strain 2880STDY5682809 "Klebsiella michiganensis strain 2880STDY5682809 is a Gram-negative, nonsporulating, rod-shaped bacterium that thrives optimally at 37.0°C. As a chemoheterotroph, this strain utilizes organic compounds as its energy source, allowing it to adapt to various habitats where organic matter is present. Its facultative anaerobic nature enables it to grow in both aerobic and anaerobic environments, reflecting its versatility in utilizing available oxygen and substrates.↵↵Klebsiella species, including K. michiganensis, are commonly found in diverse ecological niches, indicating their potential roles in nutrient cycling and organic matter decomposition in various ecosystems. The ability of strain 2880STDY5682809 to flourish in multiple habitats suggests its ecological plasticity, which may contribute to its survival and proliferation in fluctuating environmental conditions. This adaptability highlights the potential for further exploration of its ecological roles and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 FKYS00000000.1 Bac0011598 Klebsiella oxytoca strain 2880STDY5682666 "Klebsiella oxytoca strain 2880STDY5682666 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic properties and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, indicating its reliance on a diverse range of substrates for growth and metabolism.↵↵Klebsiella oxytoca is known to inhabit a variety of environments, which may include soil, water, and the gastrointestinal tracts of humans and animals. Its facultative anaerobic nature allows it to adapt to varying oxygen levels, enhancing its survival in different ecological niches. This adaptability may also contribute to its potential role in nutrient cycling within its habitats.↵↵Given its metabolic versatility and broad habitat range, K. oxytoca strain 2880STDY5682666 may play a significant role in the microbial communities of diverse environments, influencing organic matter decomposition and nutrient availability. Further exploration of its ecological interactions could provide insights into its contribution to ecosystem functions and microbial dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 FKYV00000000.1 Bac0011599 Enterobacter hormaechei strain 2880STDY5682790 "Enterobacter hormaechei strain 2880STDY5682790 is a Gram-negative bacterium characterized by its facultative anaerobic metabolism and association with host environments. As a member of the Enterobacter genus, this strain exhibits a versatile metabolic capability, allowing it to thrive in both aerobic and anaerobic conditions. The host-associated habitat suggests that it may be found in various niches within its host organism, potentially contributing to the microbial diversity of the microbiome.↵↵The facultative anaerobic nature of Enterobacter hormaechei strain 2880STDY5682790 indicates its ability to adapt to fluctuating oxygen levels, which is a critical trait for survival in dynamic environments, particularly in association with living hosts. This adaptability may facilitate its role in nutrient cycling and interaction with other microbial communities present in the host. ↵↵Given its association with host environments, Enterobacter hormaechei strain 2880STDY5682790 could be involved in complex ecological interactions, potentially impacting the host's health and microbial ecology. Its capacity to thrive in diverse conditions highlights the evolutionary advantage of metabolic flexibility among microbes inhabiting host-associated habitats, which may play a crucial role in their persistence and ecological success." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 FKZC00000000.1 Bac0011600 Klebsiella oxytoca strain 2880STDY5682691 "Klebsiella oxytoca strain 2880STDY5682691 is a nonsporulating, Gram-negative rod that functions as a chemoheterotroph and optimally grows at a temperature of 37.0°C. This strain, like other members of the Klebsiella genus, demonstrates a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and low-oxygen environments. Its capability to adapt to various habitats underscores its ecological versatility, suggesting a potential role in diverse environmental and clinical settings.↵↵As a chemoheterotroph, Klebsiella oxytoca strain 2880STDY5682691 relies on organic compounds as its energy source, which may influence its interactions within microbial communities. This strain's presence in multiple habitats indicates its adaptability and potential significance in nutrient cycling, particularly in environments rich in organic matter. Its ability to survive and grow under varying oxygen conditions further enhances its ecological resilience, allowing it to occupy niches where other microbes may be limited by oxygen availability. Understanding the traits of this strain can provide insights into its ecological roles and potential applications in biotechnology or environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 FKZE00000000.1 Bac0011601 Thiomonas delicata strain DSM 16361 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Thiomonas Thiomonas delicata 364030 FLMQ00000000.1 Bac0011602 Candidatus Accumulibacter sp. S1 Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter aalborgensis 1860102 FLQX00000000.1 Bac0011603 Vibrio celticus strain CECT 7224 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio celticus 446372 FLQZ00000000.1 Bac0011604 Marinomonas gallaica strain CECT 5115 "Marinomonas gallaica strain CECT 5115 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolic characteristics. This strain is part of the Marinomonas genus, which is known for its adaptation to marine environments. The Gram-negative nature of M. gallaica suggests a complex cell wall structure, typically characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may contribute to its survival in diverse aquatic habitats.↵↵As an aerobic organism, M. gallaica strain CECT 5115 relies on oxygen for its metabolic processes, indicating a potential role in the cycling of organic materials in oxygen-rich marine environments. Its optimal growth temperature of 25.0°C aligns with temperate marine conditions, suggesting that this strain may be well-integrated into the microbial communities found in coastal and oceanic waters.↵↵The presence of this specific strain in marine ecosystems could potentially indicate its involvement in biogeochemical processes, such as nutrient cycling and organic matter degradation. Further exploration of its metabolic pathways and interactions with other marine microorganisms may reveal insights into its ecological role and contributions to the dynamics of marine microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas gallaica Gram-negative rod aerobic 25 mesophilic 1806667 FLRA00000000.1 Bac0011605 Micromonospora sediminicola strain DSM 45794 "Micromonospora sediminicola strain DSM 45794 is a Gram-positive, spherical bacterium that exhibits the ability to form spores, indicating its capacity for survival in adverse conditions. This strain thrives optimally at a temperature of 32.0°C and is strictly aerobic, requiring oxygen for its metabolic processes. The spore-forming capability of M. sediminicola suggests a potential resilience to environmental stresses, which may be advantageous for its survival in diverse habitats. ↵↵The spherical morphology of this bacterium, combined with its spore-forming nature, points to its adaptation strategies, allowing it to endure fluctuations in environmental conditions while maintaining metabolic functions. As an aerobic organism, M. sediminicola likely plays a role in the degradation of organic matter in oxygen-rich environments, contributing to nutrient cycling and potentially influencing the microbial community structure in its ecological niche. This insight underscores the importance of M. sediminicola in biogeochemical processes, particularly in sedimentary ecosystems where oxygen levels permit aerobic microbial activity." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sediminicola Gram-positive sphere aerobic 32 mesophilic spore-forming 946078 FLRH00000000.1 Bac0011606 Streptomyces sp. OspMP-M45 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. OspMP-M45 1115570 FLTP00000000.1 Bac0011607 Streptomyces sp. Ncost-T6T-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ncost-T6T-1 1100828 FLTR00000000.1 Bac0011608 Xanthomonas translucens pv. graminis Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas graminis 3390026 FLUK00000000.1 Bac0011609 Terasakiella sp. PR1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Terasakiellaceae Terasakiella Terasakiella magnetica 1867952 FLYE00000000.1 Bac0011610 Rhizobium hainanense strain CCBAU 57015 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Martinezella Martinezella hainanensis 52131 FMAC00000000.1 Bac0011611 Bacillus weihenstephanensis strain SDA_GO95 "Bacillus weihenstephanensis strain SDA_GO95 is a Gram-positive, rod-shaped bacterium that thrives in the unique and extreme environment of the Iheya Ridge hydrothermal vent field in the Okinawa Trough. This strain is classified as a facultative anaerobe, indicating its ability to adapt to varying oxygen levels, which is crucial for survival in deep-sea habitats where oxygen availability can fluctuate dramatically.↵↵The isolation of this strain from a deep-sea hydrothermal vent underscores its potential role in biogeochemical cycles in such extreme environments, where it may contribute to nutrient recycling and organic matter decomposition. The geothermal activity associated with hydrothermal vents creates a complex ecosystem, and B. weihenstephanensis may interact with other microbial communities in these habitats, influencing the metabolic pathways and ecological dynamics at play.↵↵In summary, the adaptability of Bacillus weihenstephanensis strain SDA_GO95 to both aerobic and anaerobic conditions suggests it may play a versatile role in the microbial ecology of hydrothermal vent systems, where oxygen gradients can significantly impact microbial community structure and function. Further research could elucidate its specific contributions to the biogeochemistry of these unique ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 FMAK00000000.1 Bac0011612 Chitinophaga costaii strain A37T2 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga costaii 1335309 FMAR00000000.1 Bac0011613 Bacillus altitudinis strain NIO-1130 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus altitudinis soil 293387 FMAS00000000.1 Bac0011614 Gordonia sp. v-85 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. v-85 1761786 FMAX00000000.1 Bac0011615 Enterobacter oryzendophyticus strain REICA_082 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia oryzendophytica 1005665 FMAY00000000.1 Bac0011616 Gilliamella sp. R-53144 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella intestini 1798183 FMBA00000000.1 Bac0011617 Bifidobacterium commune strain R-52791 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium commune anaerobic 1505727 FMBL00000000.1 Bac0011618 Streptomyces sp. DvalAA-43 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DvalAA-43 1839762 FMBW00000000.1 Bac0011619 Streptomyces sp. DvalAA-19 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DvalAA-19 1839761 FMCC00000000.1 Bac0011620 Streptomyces sp. BvitLS-983 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. BvitLS-983 1838282 FMCF00000000.1 Bac0011621 Streptomyces sp. di188 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. di188 693491 FMCG00000000.1 Bac0011622 Streptomyces sp. SolWspMP-5a-2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SolWspMP-5a-2 1838281 FMCI00000000.1 Bac0011623 Streptomyces sp. ScaeMP-e83 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ScaeMP-e83 1758151 FMCJ00000000.1 Bac0011624 Streptomyces sp. SolWspMP-sol7th Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SolWspMP-sol7th 1839776 FMCN00000000.1 Bac0011625 Micromonospora carbonacea strain DSM 43168 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora carbonacea 47853 FMCT00000000.1 Bac0011626 Micromonospora matsumotoense strain DSM 44100 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora matsumotoense 121616 FMCU00000000.1 Bac0011627 Micromonospora haikouensis strain DSM 45626 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora haikouensis 686309 FMCW00000000.1 Bac0011628 Streptomyces sp. DconLS Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DconLS 1839766 FMDI00000000.1 Bac0011629 Streptomyces sp. Ncost-T6T-2b Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ncost-T6T-2b 1839773 FMDL00000000.1 Bac0011630 Micromonospora halophytica strain DSM 43171 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora halophytica 29 mesophilic 47864 FMDN00000000.1 Bac0011631 Streptomyces sp. WMMB 714 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WMMB 714 1286822 FMHJ00000000.1 Bac0011632 Streptomyces sp. SceaMP-e96 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SceaMP-e96 1100824 FMHL00000000.1 Bac0011633 Micromonospora inyonensis strain DSM 46123 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora inyonensis 47866 FMHU00000000.1 Bac0011634 Micromonospora rhizosphaerae strain DSM 45431 "Micromonospora rhizosphaerae strain DSM 45431 is a Gram-positive, aerobic bacterium known for its ability to form spores. This strain thrives optimally at a temperature of 32.0°C, indicating a preference for moderate warmth, which may influence its habitat and potential applications in biotechnology. The sporulation capability suggests that M. rhizosphaerae can survive in challenging environmental conditions by entering a dormant state, thereby enhancing its resilience.↵↵As a member of the genus Micromonospora, this strain is likely to be involved in soil microbiomes, where it may play a significant role in nutrient cycling and organic matter decomposition. The ability to form spores may also facilitate its dispersal in the environment, allowing it to colonize new niches and contribute to the dynamics of microbial communities.↵↵Understanding the traits of M. rhizosphaerae, particularly its aerobic metabolism and optimal growth temperature, can inform future studies on its ecological roles and potential applications in agriculture or biotechnology, particularly in processes requiring microbial degradation or biotransformation." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora rhizosphaerae Gram-positive aerobic 32 mesophilic spore-forming 568872 FMHV00000000.1 Bac0011635 Micromonospora eburnea strain DSM 44814 "Micromonospora eburnea strain DSM 44814 is a Gram-positive, aerobic, spore-forming bacterium that thrives optimally at 29.0°C. This strain is part of the genus Micromonospora, which is known for its diverse metabolic capabilities and ecological roles, particularly in soil environments. The Gram-positive nature of M. eburnea indicates a robust cell wall structure, primarily composed of peptidoglycan, which may contribute to its resilience in various habitats.↵↵As a spore-forming organism, M. eburnea has the capacity to produce spores that enable it to survive in adverse conditions, such as nutrient depletion or extreme temperatures. This ability to sporulate is a significant trait that enhances its survival and dispersal, allowing it to colonize a variety of ecological niches.↵↵Being an aerobic bacterium, M. eburnea requires oxygen for its metabolic processes, suggesting that it is well-adapted to environments where oxygen is readily available. Its optimal growth temperature of 29.0°C indicates a preference for mesophilic conditions, which aligns with many soil-dwelling microorganisms.↵↵The unique combination of traits exhibited by Micromonospora eburnea strain DSM 44814 suggests it may play an important role in nutrient cycling within its ecological niche, particularly in the breakdown of organic matter and potential interactions with other soil microbes. This capacity for decomposition may contribute to soil health and fertility, highlighting the ecological significance of this strain in its natural habitat." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora eburnea Gram-positive non-motile aerobic 29 mesophilic spore-forming 227316 FMHY00000000.1 Bac0011636 Micromonospora citrea strain DSM 43903 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora citrea 47855 FMHZ00000000.1 Bac0011637 Micromonospora yangpuensis strain DSM 45577 "Micromonospora yangpuensis strain DSM 45577 is a Gram-positive, aerobic bacterium known for its ability to form spores. This strain is a member of the genus Micromonospora, which is recognized for its ecological roles in soil environments and its potential applications in biotechnology. As a spore-forming organism, M. yangpuensis can survive in various environmental conditions, likely contributing to its resilience and adaptability in terrestrial ecosystems.↵↵The aerobic nature of this strain indicates its reliance on oxygen for metabolic processes, which aligns with the characteristics of many soil-dwelling actinomycetes. This trait not only facilitates the breakdown of organic material but may also play a role in nutrient cycling within its habitat. The spore formation capability of M. yangpuensis suggests an evolutionary strategy to endure unfavorable conditions, allowing the bacterium to persist until environmental conditions improve.↵↵Research into Micromonospora species has often highlighted their potential for producing bioactive compounds, such as antibiotics and enzymes, which may also be a characteristic of M. yangpuensis. Understanding the specific traits of this strain can provide insights into its ecological contributions and potential biotechnological applications. Further exploration of its metabolic capabilities and ecological interactions may reveal additional benefits and applications in agricultural and pharmaceutical fields." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora yangpuensis Gram-positive aerobic spore-forming 683228 FMIA00000000.1 Bac0011638 Methanoculleus chikugoensis Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus chikugoensis 118126 FMID00000000.1 Bac0011639 Bacillus weihenstephanensis strain INRA_SL' "Bacillus weihenstephanensis strain INRA_SL is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain was isolated from the deep sea, specifically from the Iheya Ridge hydrothermal vent field in the Okinawa Trough, an environment characterized by extreme conditions and rich in mineral resources. ↵↵As a member of the Bacillus genus, this strain is likely to possess the capability for spore formation, providing it with a survival advantage in fluctuating environmental conditions typical of hydrothermal vent ecosystems. Its facultative anaerobic nature suggests that B. weihenstephanensis strain INRA_SL can adapt to both oxygen-rich and oxygen-limited environments, allowing it to thrive in the dynamic conditions of hydrothermal vents where oxygen levels may vary significantly.↵↵The unique habitat of this strain may influence its metabolic pathways and enzymatic activities, potentially enabling it to utilize various substrates available in the vent environment. The ability of B. weihenstephanensis strain INRA_SL to survive and function in such extreme conditions could offer insights into biotechnological applications, particularly in the fields of bioenergy and bioremediation, where extremophiles are increasingly being studied for their unique biochemical properties." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 FMJH00000000.1 Bac0011640 Bacillus toyonensis strain NVH_141/1-01_V_C53 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 FMJK00000000.1 Bac0011641 Anaerobium acetethylicum strain GluBS11 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobium Anaerobium acetethylicum anaerobic 1619234 FMKA00000000.1 Bac0011642 Thiotrichales bacterium HS_08 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Candidatus Venteria Candidatus Venteria ishoeyi 1899563 FMSV00000000.2 Bac0011643 Borreliella japonica strain ATCC 51557 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella japonica 34095 FMTE00000000.1 Bac0011644 Ruminococcaceae bacterium YRB3002 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium YRB3002 1520819 FMTG00000000.1 Bac0011645 Rhizobium loessense strain CGMCC 1.3401 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium mongolense 57676 FMTM00000000.1 Bac0011646 Lachnospiraceae bacterium C10 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium C10 1520822 FMTN00000000.1 Bac0011647 Flavobacterium saliperosum strain CGMCC 1.3801 "Flavobacterium saliperosum strain CGMCC 1.3801 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. Optimal growth conditions for this strain are observed at a temperature of 29.0°C, which suggests a preference for moderately warm environments. This bacterium's aerobic requirement indicates its reliance on oxygen for growth and energy production, reflecting its adaptation to environments where oxygen is readily available.↵↵The rod shape of Flavobacterium saliperosum is typical of the Flavobacteriaceae family, which often includes bacteria that play significant roles in the degradation of organic materials. Despite the lack of information regarding its specific ecological roles, the traits of this strain may suggest its involvement in nutrient cycling within its habitat, particularly in environments where organic matter is abundant. Understanding the physiological characteristics of Flavobacterium saliperosum strain CGMCC 1.3801 can contribute to broader insights into microbial diversity and functional capabilities in aquatic ecosystems, where members of the Flavobacterium genus are frequently found." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium saliperosum Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 329186 FMTY00000000.1 Bac0011648 Agrobacterium sp. DSM 25558 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. DSM 25558 1907665 FMUD00000000.1 Bac0011649 Thiohalorhabdus denitrificans strain HL 19 "Thiohalorhabdus denitrificans strain HL 19 is a Gram-negative, rod-shaped microbe characterized as a non-spore-forming organism that thrives optimally at a temperature of 32.0°C. This strain is classified as a microaerophile, indicating that it requires reduced oxygen levels for its metabolic processes, which is typical for organisms involved in denitrification. ↵↵The specific physiological adaptations of Thiohalorhabdus denitrificans strain HL 19 allow it to occupy niches where oxygen is limited, likely contributing to its role in the nitrogen cycle through denitrification. Given its microaerophilic nature, this organism may be particularly well-suited for environments such as sediment layers or water columns where oxygen concentrations fluctuate. The absence of sporulation suggests a reliance on specific environmental conditions for survival and proliferation, rather than forming resistant spores.↵↵This microbe's ability to engage in denitrification under microaerophilic conditions presents an important ecological function, potentially influencing nitrogen availability in its habitat. Such traits not only highlight the organism's metabolic versatility but also underscore its potential role in biogeochemical cycles, particularly in nutrient-rich or polluted environments where denitrification is essential for mitigating excess nitrogen." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiohalorhabdales Thiohalorhabdaceae Thiohalorhabdus Thiohalorhabdus denitrificans Gram-negative rod non-motile microaerophile 32 mesophilic non-spore-forming 381306 FMUN00000000.1 Bac0011650 Butyrivibrio hungatei strain XBD2006 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio hungatei rumen 185008 FMUR00000000.1 Bac0011651 Alkaliphilus peptidifermentans DSM 18978 Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Alkaliphilus Alkaliphilus peptidifermentans anaerobic 1120976 FMUS00000000.1 Bac0011652 Blautia sp. SF-50 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. SF-50 1520805 FMUW00000000.1 Bac0011653 Flavobacterium caeni strain CGMCC 1.7031 "Flavobacterium caeni strain CGMCC 1.7031 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵As a member of the Flavobacterium genus, this organism is likely to be involved in the degradation of organic matter, suggesting a potential role in nutrient cycling within its habitat. The aerobic nature of F. caeni strain CGMCC 1.7031 implies that it requires oxygen for growth, which may influence its ecological niche, particularly in aerobic environments such as soils or freshwater systems.↵↵Given its traits, F. caeni strain CGMCC 1.7031 may be particularly well-suited for biotechnological applications that exploit its metabolic processes for the bioremediation of organic pollutants or in the production of bioactive compounds. The non-sporulating characteristic further indicates that it may rely on more stable environmental conditions, influencing its adaptability and survival strategies in fluctuating ecosystems. Overall, the specific traits of this strain suggest it occupies a unique ecological role, potentially contributing to the microbial diversity and functionality of its environment while participating in critical biogeochemical processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium caeni Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 490189 FMVF00000000.1 Bac0011654 Paracoccus tibetensis strain CGMCC 1.8925 "Paracoccus tibetensis strain CGMCC 1.8925 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This strain belongs to the genus Paracoccus, which is known for its diverse metabolic capabilities, including its involvement in various biogeochemical cycles. ↵↵The Gram-negative cell wall structure of P. tibetensis is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, contributing to its resilience in various environmental conditions. As a rod-shaped organism, it presents a morphology that may facilitate motility and nutrient uptake in its aerobic habitat. The requirement for oxygen indicates that P. tibetensis likely plays a role in aerobic processes, potentially contributing to the degradation of organic matter in its environment.↵↵Understanding the optimal growth conditions of P. tibetensis strain CGMCC 1.8925, particularly its temperature preference, can provide insights into its ecological niche and potential applications in biotechnology, such as bioremediation or biofertilization. The adaptability of this strain to specific environmental conditions may offer a pathway for exploring its metabolic functions and enhancing its utility in industrial processes that rely on aerobic microorganisms." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus tibetensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 336292 FMVT00000000.1 Bac0011655 Afifella marina DSM 2698 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Afifellaceae Afifella Afifella marina anaerobic 1120955 FMVW00000000.1 Bac0011656 Arthrobacter sp. UNCCL28 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. UNCCL28 1502752 FMWE00000000.1 Bac0011657 Epibacterium ulvae strain U95 "Epibacterium ulvae strain U95 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 25.0 °C. This microbe is notable for its adaptation to aerobic environments, which suggests a reliance on oxygen for its metabolic processes. The Gram-negative classification indicates that E. ulvae possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that may influence its interactions with surrounding environments and other microorganisms.↵↵The rod shape of this bacterium may facilitate motility and colonization in its ecological niche, enhancing its ability to thrive in competitive environments. The optimal growth temperature of 25.0 °C aligns with conditions that may be found in various aquatic habitats, indicating a potential ecological role in these ecosystems.↵↵Understanding the characteristics of E. ulvae strain U95 can provide insights into its ecological interactions and potential roles in nutrient cycling within its habitat. Its aerobic nature suggests it may contribute to the degradation of organic materials in oxygen-rich environments, thereby playing a significant role in the ecological dynamics of its surroundings. This functional capacity may position E. ulvae as an important player in maintaining the health and stability of its ecosystem, particularly in contexts where aerobic processes are critical for nutrient availability." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Epibacterium Epibacterium ulvae Gram-negative rod aerobic 25 mesophilic 1156985 FMWG00000000.1 Bac0011658 Photorhabdus luminescens strain ATCC 29999 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus luminescens 29488 FMWJ00000000.1 Bac0011659 Acidaminobacter hydrogenoformans DSM 2784 Bacillati Bacillota Clostridia Peptostreptococcales Acidaminobacteraceae Acidaminobacter Acidaminobacter hydrogenoformans anaerobic 1120920 FMWL00000000.1 Bac0011660 Methylobacterium sp. UNC378MF Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. UNC378MF 1502748 FMWU00000000.1 Bac0011661 Sphingomonas sp. NFR15 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. NFR15 1566282 FMWX00000000.1 Bac0011662 Lactobacillus kefiranofaciens strain ATCC 43761 "Lactobacillus kefiranofaciens strain ATCC 43761 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds. L. kefiranofaciens is primarily known for its role in the fermentation of dairy products, particularly kefir, where it contributes to the development of flavor and texture.↵↵As an aerobe, this microbe requires oxygen for its metabolic processes, distinguishing it from many other lactic acid bacteria that may thrive in anaerobic conditions. The ability of L. kefiranofaciens to adapt to various habitats suggests a versatile ecological niche, allowing it to participate in diverse fermentation environments. ↵↵The presence of this strain in multiple habitats highlights its potential significance in the fermentation industry, where it could be utilized to enhance the quality of probiotic foods. Understanding its specific metabolic pathways and interactions within microbial communities could provide insights into its functional roles in both food production and gut microbiota health." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles FMXC00000000 Bac0011663 Algoriphagus alkaliphilus strain DSM 22703 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus alkaliphilus 279824 FMXE00000000.1 Bac0011664 Pseudomonas sp. NFPP33 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFPP33 1566230 FMXG00000000.1 Bac0011665 Butyrivibrio sp. INlla18 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. INlla18 1520806 FMXK00000000.1 Bac0011666 Desulfonatronum thiosulfatophilum strain ASO4-2 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfonatronaceae Desulfonatronum Desulfonatronum thiosulfatophilum anaerobic 617002 FMXO00000000.1 Bac0011667 Bauldia litoralis strain ATCC 35022 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Kaistiaceae Bauldia Bauldia litoralis 665467 FMXQ00000000.1 Bac0011668 Pseudomonas putida strain NFIX47 "Pseudomonas putida strain NFIX47 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is characterized by its nonsporulating nature. This strain is a heterotroph, indicating its dependence on organic compounds for energy, which it likely sources from its natural habitats, primarily soil and wastewater environments. As a facultative anaerobe, Pseudomonas putida NFIX47 can thrive in both aerobic and anaerobic conditions, providing it with flexibility in varied ecological niches.↵↵The versatility of Pseudomonas putida NFIX47 in utilizing diverse organic substrates contributes to its potential role in bioremediation processes, where it may assist in the degradation of pollutants found in contaminated soils and wastewater. Its ability to adapt to different oxygen levels further enhances its survival in fluctuating environments, making it a candidate for applications in environmental microbiology. Moreover, the strain's inherent properties may facilitate interactions with other microbial communities, influencing nutrient cycling and organic matter decomposition in its habitats. Understanding the functional capabilities of Pseudomonas putida NFIX47 can provide insights into its ecological roles, particularly in the context of bioremediation and soil health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 FMXW00000000.1 Bac0011669 Bacteroides ovatus strain NLAE-zl-C500 "Bacteroides ovatus strain NLAE-zl-C500 is a Gram-negative, anaerobic bacterium that resides within the gut microbiota. This strain is part of the Bacteroides genus, which is known for its role in the human gastrointestinal tract, contributing to the breakdown of complex carbohydrates and promoting nutrient absorption. As an anaerobe, B. ovatus strain NLAE-zl-C500 thrives in oxygen-free environments, which is characteristic of the gut habitat where oxygen levels are minimal.↵↵The ecological role of Bacteroides species, including strain NLAE-zl-C500, is essential for maintaining gut health, as they are involved in the fermentation of dietary fibers and the production of short-chain fatty acids (SCFAs). These metabolites play a crucial role in gut homeostasis and have been linked to various health benefits, including anti-inflammatory effects and modulation of immune responses. The presence of such bacteria can influence the overall microbial diversity in the gut, which is vital for optimal digestive function and metabolic health.↵↵In summary, Bacteroides ovatus strain NLAE-zl-C500 exemplifies the complex interplay between anaerobic bacteria and gut health, highlighting the importance of anaerobes in the microbiome's ability to process nutrients and maintain a balanced ecosystem. Understanding the specific contributions of this strain may offer insights into its potential applications in promoting gut health and preventing dysbiosis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 FMYE00000000.1 Bac0011670 Propionibacteriaceae bacterium 10J strain LZ-22 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Raineyella Raineyella antarctica 1577474 FMYF00000000.1 Bac0011671 Sanguibacter sp. ISLP-3 Bacillati Actinomycetota Actinomycetes Micrococcales Sanguibacteraceae Sanguibacter Sanguibacter gelidistatuariae 1814289 FMYH00000000.1 Bac0011672 Pelagirhabdus alkalitolerans strain S5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pelagirhabdus Pelagirhabdus alkalitolerans 1612202 FMYI00000000.1 Bac0011673 Leuconostocaceae bacterium R-53105 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostocaceae bacterium R-53105 1855370 FMYJ00000000.1 Bac0011674 Bacillus lonarensis strain 25nlg Bacillati Bacillota Bacilli Caryophanales Bacillaceae Shouchella Shouchella lonarensis 1464122 FMYM00000000.1 Bac0011675 bacterium A7P-90m Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Williamwhitmaniaceae Williamwhitmania Williamwhitmania taraxaci 1640674 FMYP00000000.1 Bac0011676 Streptomyces sp. LaPpAH-199 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. LaPpAH-199 1265493 FMYS00000000.1 Bac0011677 Desulfurella multipotens strain DSM 8415 Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Desulfurellaceae Desulfurella Desulfurella multipotens anaerobic 79269 FMYU00000000.1 Bac0011678 Geotoga petraea strain WG14 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Geotoga Geotoga petraea 28234 FMYV00000000.1 Bac0011679 Succiniclasticum ruminis strain DSM 11005 Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Succiniclasticum Succiniclasticum ruminis 40841 FMYW00000000.1 Bac0011680 Melghirimyces thermohalophilus strain DSM 45514 "Melghirimyces thermohalophilus strain DSM 45514 is a Gram-positive bacterium characterized by its ability to form spores and its aerobic metabolism. This strain demonstrates resilience in varying environmental conditions, particularly in high-salinity environments, as suggested by its designation as a halophilic organism. The sporulation capability of M. thermohalophilus allows it to survive unfavorable conditions, which is a crucial adaptation for persistence in extreme habitats.↵↵As an aerobic microbe, M. thermohalophilus relies on oxygen for its metabolic processes, which may play a role in its ecological niche. Its Gram-positive nature indicates a thick peptidoglycan layer in the cell wall, contributing to its structural integrity and potentially influencing its interaction with other microorganisms in its environment.↵↵Understanding the traits of Melghirimyces thermohalophilus strain DSM 45514 can provide insights into the adaptability of microorganisms in extreme conditions. The ability to form spores not only aids in survival but may also facilitate the organism's dispersal in saline environments, potentially influencing microbial community dynamics in such habitats. The study of this strain may further illuminate the metabolic pathways utilized by halophilic bacteria, enhancing our comprehension of microbial life in extreme ecological niches." Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Melghirimyces Melghirimyces thermohalophilus Gram-positive aerobic spore-forming 1236220 FMZA00000000.1 Bac0011681 Paenibacillus sp. CF095 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. CF095 1881033 FMZN00000000.1 Bac0011682 Variovorax sp. CF079 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. CF079 1882774 FMZU00000000.1 Bac0011683 Ruegeria marina strain CGMCC 1.9108 "Ruegeria marina strain CGMCC 1.9108 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C. This strain is a member of the genus Ruegeria, which is known for its association with marine environments. The Gram-negative classification indicates that this bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that can influence its interactions with other microorganisms and its resilience in varying environmental conditions.↵↵The rod shape of Ruegeria marina strain CGMCC 1.9108 suggests potential motility and adaptability in its aquatic habitat, which may facilitate its survival and nutrient acquisition. These traits are significant for understanding its role in marine ecosystems, particularly in nutrient cycling and interactions with other marine organisms. ↵↵Given the optimal growth temperature of 37.0°C, this strain may be well-adapted to warmer marine environments, potentially influencing its distribution and ecological interactions. Insights into its metabolic pathways and ecological functions could further elucidate its contributions to marine biogeochemistry, particularly in relation to organic matter decomposition and nutrient recycling in coastal waters. Understanding the specific ecological roles of Ruegeria marina strain CGMCC 1.9108 could provide valuable information regarding microbial dynamics in marine ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria marina Gram-negative rod non-motile 37 mesophilic 639004 FMZV00000000.1 Bac0011684 Bradyrhizobium sp. R5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium brasilense 1419277 FMZW00000000.1 Bac0011685 Bacillus aryabhattai strain B8W22 "Bacillus aryabhattai strain B8W22 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This strain is adapted to aerobic environments and is commonly found in granite residual soil, as well as in association with plant roots. The presence of B. aryabhattai in these habitats suggests a potential role in soil health and plant interactions, possibly contributing to nutrient cycling or plant growth promotion. ↵↵The ability of B. aryabhattai strain B8W22 to sporulate allows it to survive in adverse environmental conditions, making it a resilient member of the soil microbiome. Its association with plant roots may indicate a symbiotic relationship, although the specifics of such interactions remain to be fully elucidated. Overall, the ecological significance of this strain could be linked to its role in maintaining soil structure and fertility, highlighting the importance of microbial communities in terrestrial ecosystems. Further research into its metabolic capabilities and interactions with plants could provide deeper insights into its functional contributions to soil health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia aryabhattai Gram-positive rod aerobic granite residual soil; plant roots; soil spore-forming 412384 FMZY00000000.1 Bac0011686 Rhodococcus tukisamuensis strain JCM 11308 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus tukisamuensis 29 mesophilic 168276 FNAB00000000.1 Bac0011687 Pseudomonas alcaliphila strain JCM 10630 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas alcaliphila aerobic 101564 FNAE00000000.1 Bac0011688 Peptococcus niger strain DSM 20475 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Peptococcus Peptococcus niger anaerobic 2741 FNAF00000000.1 Bac0011689 Paracoccus isoporae strain DSM 22220 "Paracoccus isoporae strain DSM 22220 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and thrives optimally at a temperature of 29.0°C. This strain belongs to the genus Paracoccus, which is known for its diverse metabolic capabilities, including the ability to utilize various substrates in aerobic environments. As a member of the microbial community, P. isoporae may play a significant role in biogeochemical cycles, particularly in nitrogen and carbon cycling, due to its metabolic versatility.↵↵The Gram-negative nature of P. isoporae indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria and could suggest specific interactions with its environment. The rod shape may confer advantages in motility and nutrient uptake, facilitating its adaptation to various ecological niches. ↵↵Given its aerobic requirement, P. isoporae likely occupies environments where oxygen is readily available, which may include soil or water systems. The optimal growth temperature of 29.0°C suggests that this strain is well-suited to moderate-temperature habitats, potentially aligning with seasonal temperature variations in its native ecosystem. Overall, the physiological traits of Paracoccus isoporae strain DSM 22220 imply its potential contribution to ecosystem functioning and nutrient cycling in aerobic environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus isoporae Gram-negative rod aerobic 29 mesophilic 591205 FNAH00000000.1 Bac0011690 Myxococcus virescens strain DSM 2260 Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus virescens 83456 FNAJ00000000.1 Bac0011691 Psychrobacter pacificensis strain DSM 23406 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter pacificensis 112002 FNAL00000000.1 Bac0011692 Dyadobacter soli strain DSM 25329 "Dyadobacter soli strain DSM 25329 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25°C. This strain belongs to the genus Dyadobacter, which is characterized by its ecological role in soil environments. The Gram-negative cell wall structure of Dyadobacter soli strain DSM 25329 may confer specific advantages in nutrient acquisition and resistance to certain environmental stresses, which are key for its survival and function in complex soil microbiomes.↵↵As an aerobic organism, this strain likely participates in various soil metabolic processes, contributing to the degradation of organic materials and the cycling of nutrients. Its ability to grow optimally at 25°C suggests a preference for temperate conditions, which may influence its distribution and interactions within soil microbial communities.↵↵Understanding the specific ecological roles and metabolic capabilities of Dyadobacter soli strain DSM 25329 can provide insights into its contributions to soil health and fertility. Further research into its interactions with other soil microorganisms and its potential applications in bioremediation or sustainable agriculture could enhance our knowledge of microbial dynamics in terrestrial ecosystems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter soli Gram-negative rod non-motile aerobic 25 mesophilic 659014 FNAN00000000.1 Bac0011693 Rhodospira trueperi strain ATCC 700224 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospira Rhodospira trueperi 69960 FNAP00000000.1 Bac0011694 Desulfuromonas thiophila strain DSM 8987 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas thiophila anaerobic 57664 FNAQ00000000.1 Bac0011695 Citreicella thiooxidans strain DSM 10146 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger thiooxidans 282683 FNAV00000000.1 Bac0011696 Streptomyces jietaisiensis strain CGMCC 4.1859 "Streptomyces jietaisiensis strain CGMCC 4.1859 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities, characteristic of the Streptomyces genus. This strain thrives optimally at a temperature of 25.0°C and requires aerobic conditions for growth, indicating its dependency on oxygen for metabolic processes.↵↵As a member of the Streptomyces genus, S. jietaisiensis is likely to possess the ability to produce a variety of secondary metabolites, including antibiotics, which is a hallmark of many species within this group. The sporulation process not only aids in the survival of the organism under adverse environmental conditions but also plays a critical role in its lifecycle, allowing for dissemination and colonization in various habitats.↵↵Given its ecological role as a soil-dwelling microbe, S. jietaisiensis may contribute to nutrient cycling and the degradation of organic matter, thereby influencing soil health and microbial diversity. The specific adaptation to aerobic environments suggests a potential competitive advantage in environments rich in organic substrates that are conducive to oxygen-dependent metabolic activities. Further research into this strain could unveil its specific contributions to soil microbiomes and its potential applications in biotechnology, particularly in the discovery of novel bioactive compounds." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseoaurantiacus Gram-positive rod aerobic 25 mesophilic spore-forming 68213 FNAX00000000.1 Bac0011697 Paenibacillus sp. cl6col Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. cl6col 1761878 FNAZ00000000.1 Bac0011698 Ulvibacter litoralis strain DSM 16195 "Ulvibacter litoralis strain DSM 16195 is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature. This strain thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments typically associated with marine habitats. As an organotroph and chemotroph, Ulvibacter litoralis utilizes organic compounds as its energy source, which highlights its role in nutrient cycling within its ecosystem.↵↵The specific metabolic capabilities of Ulvibacter litoralis suggest that it may play a significant role in the degradation of organic matter in marine environments, contributing to the overall health and nutrient dynamics of coastal ecosystems. Its adaptation to cooler temperatures and reliance on organic substrates may also reflect its ecological niche in environments where these conditions prevail, such as tidal zones or cold water coastal areas. Understanding the traits of Ulvibacter litoralis can provide insights into microbial diversity and function in marine ecosystems, particularly in relation to organic matter processing and energy flow." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Ulvibacter Ulvibacter litoralis Gram-negative rod motile 16 organotroph; chemotroph psychrotolerant non-spore-forming 227084 FNBA00000000.1 Bac0011699 Fontibacillus panacisegetis strain DSM 28129 "Fontibacillus panacisegetis strain DSM 28129 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores. This strain thrives optimally at a temperature of 25.0 °C and exhibits facultative aerobic and anaerobic metabolic capabilities, allowing it to adapt to various environmental oxygen levels. ↵↵As a spore-forming organism, F. panacisegetis is likely to possess mechanisms for survival in challenging conditions, including desiccation and nutrient deprivation, which are common in diverse ecological niches. The facultative nature of its oxygen requirement suggests that this microbe can utilize both aerobic respiration and fermentation pathways, depending on the availability of oxygen, thereby enhancing its versatility in different habitats.↵↵The ecological significance of Fontibacillus panacisegetis strain DSM 28129 may lie in its potential role in the degradation of organic materials in soils or other environments where it is found. Its spore-forming ability could contribute to its resilience and persistence in fluctuating conditions, which is crucial for maintaining microbial diversity and activity in ecosystems. Further studies could elucidate its functional roles and interactions within microbial communities, as well as its applications in biotechnology or bioremediation efforts." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Fontibacillus Fontibacillus panacisegetis Gram-positive rod facultative aerobe/anaerobe 25 mesophilic spore-forming 670482 FNBG00000000.1 Bac0011700 Chryseobacterium hungaricum strain DSM 19684 "Chryseobacterium hungaricum strain DSM 19684 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. ↵↵As a member of the genus Chryseobacterium, this organism is likely to be involved in various ecological roles, particularly in the decomposition of organic matter and nutrient cycling in its natural habitat. The aerobic nature of C. hungaricum indicates its reliance on oxygen for metabolic processes, which may influence its distribution in environments with sufficient oxygen availability. ↵↵Understanding the growth temperature and oxygen requirements of C. hungaricum can provide insights into its potential applications in biotechnology and environmental microbiology, especially in processes that require aerobic conditions. Further research could explore its interactions within microbial communities, particularly in soil or aquatic ecosystems, where its metabolic capabilities may contribute to ecosystem function and resilience." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas hungarica Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 454006 FNBH00000000.1 Bac0011701 Celeribacter baekdonensis strain DSM 27375 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter baekdonensis 875171 FNBL00000000.1 Bac0011702 Pseudomonas seleniipraecipitans strain LMG 25475 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Phytopseudomonas Phytopseudomonas seleniipraecipitans 640205 FNBM00000000.1 Bac0011703 Bacteroidales bacterium KHT7 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium KHT7 1855373 FNBQ00000000.1 Bac0011704 Dyella sp. 333MFSha Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella sp. 333MFSha 1798240 FNBR00000000.1 Bac0011705 Sporolituus thermophilus DSM 23256 "Sporolituus thermophilus DSM 23256 is a Gram-negative, rod-shaped bacterium that exhibits spore-forming capabilities and thrives in anaerobic conditions, with an optimal growth temperature of 45.0°C. This thermophilic organism is adapted to high-temperature environments, which may include various natural and industrial settings characterized by elevated thermal conditions. The ability to form spores is particularly significant, as it enables S. thermophilus to survive extreme environmental stresses, including heat and nutrient depletion, thereby enhancing its resilience in fluctuating habitats.↵↵As a strictly anaerobic microbe, S. thermophilus relies on fermentation processes for energy production, which is typical for organisms occupying low-oxygen niches. The anaerobic lifestyle may facilitate its role in biogeochemical cycles, particularly in thermophilic environments such as hot springs or deep-sea hydrothermal vents. Understanding the metabolic pathways and ecological interactions of S. thermophilus could provide insights into its potential applications in biotechnology, such as bioenergy production or bioremediation of thermally influenced environments. Overall, the unique combination of high-temperature adaptability and anaerobic metabolism positions Sporolituus thermophilus as an organism of interest for both ecological and industrial microbiological research." Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporolituus Sporolituus thermophilus Gram-negative rod anaerobic 45 thermophilic spore-forming 1123285 FNBU00000000.1 Bac0011706 Cellulosimicrobium cellulans strain DSM 43879 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium cellulans mesophilic antacid; Antarctic snow; arsenic contaminated hot spring microbial mat; biofilms; hot springs; Manikaran hot spring; Manikaran hot springs; soil Human 1710 FNBV00000000.1 Bac0011707 Desulfovibrio legallii strain KHC7 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio legallii anaerobic 571438 FNBX00000000.1 Bac0011708 Idiomarina zobellii strain KMM 231 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina zobellii 86103 FNCB00000000.1 Bac0011709 Duganella sp. OV458 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. OV458 1855290 FNCD00000000.1 Bac0011710 Limimonas halophila strain DSM 25584 "Limimonas halophila strain DSM 25584 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 37.0°C. This strain is characterized by its ability to survive in saline environments, which is suggested by its designation as a member of the genus Limimonas, typically associated with halophilic characteristics. ↵↵As a Gram-negative organism, Limimonas halophila possesses a unique outer membrane structure, which can influence its interactions with the surrounding environment, including its resistance mechanisms to various antimicrobial agents. The rod shape of this microbe is indicative of its cellular morphology, which plays a role in its motility and nutrient uptake in aerobic conditions.↵↵Understanding the optimal growth temperature of 37.0°C is crucial, as it suggests that Limimonas halophila may be well-adapted to environments that resemble mammalian body temperatures, which could imply potential interactions with other microbial communities or hosts in its natural habitat. ↵↵Overall, this strain exemplifies the adaptations of microorganisms to survive in niche environments, and its aerobic nature highlights the importance of oxygen availability in saline conditions. The traits of Limimonas halophila strain DSM 25584 underscore the complex interplay between microbial physiology and environmental factors, providing insights into the evolutionary strategies employed by halophilic bacteria in maintaining cellular functions under specific ecological conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodovibrionaceae Limimonas Limimonas halophila Gram-negative rod non-motile aerobic 37 mesophilic 1082479 FNCE00000000.1 Bac0011711 Mucilaginibacter gossypii strain Gh-67 "Mucilaginibacter gossypii strain Gh-67 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolic capabilities and is non-spore-forming. Its optimal growth temperature is approximately 29.0°C, suggesting a preference for moderate warmth, which may be indicative of its adaptation to a specific ecological niche. ↵↵The Gram-negative nature of M. gossypii implies the presence of an outer membrane containing lipopolysaccharides, which is a characteristic feature that can influence its interactions with other microorganisms and its environment. The rod shape of this bacterium may facilitate motility and nutrient absorption, potentially allowing it to thrive in diverse habitats. ↵↵The non-spore-forming trait indicates that M. gossypii relies on vegetative reproduction for propagation rather than forming dormant spores to withstand unfavorable conditions. This may limit its survival in extreme environments but allows for more rapid growth under optimal conditions.↵↵Given its aerobic requirements, M. gossypii likely engages in oxygen-dependent metabolic processes, which may influence its ecological role in soil or plant-associated environments. This bacterium's unique traits suggest it may play a significant role in the microbial communities associated with cotton plants, potentially influencing plant health and soil dynamics. Further research into its interactions within these communities could provide insights into its ecological significance and potential applications in agriculture." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter gossypii Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 551996 FNCG00000000.1 Bac0011712 Facklamia miroungae strain ATCC BAA-466 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Facklamia Facklamia miroungae microaerophile 120956 FNCK00000000.1 Bac0011713 Selenomonas ruminantium strain WCT3 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. WCT3 3158785 FNCM00000000.1 Bac0011714 Sinosporangium album strain CPCC 201354 "Sinosporangium album strain CPCC 201354 is a Gram-positive, aerobic bacterium that exhibits spore-forming capabilities, thriving optimally at a temperature of 29.0°C. This strain is characterized by its ability to produce spores, a trait that is often associated with survival in fluctuating environmental conditions. The Gram-positive nature of S. album indicates a thicker peptidoglycan layer in its cell wall, which may confer certain advantages in terms of resistance to physical and chemical stresses. ↵↵As an aerobic organism, S. album requires oxygen for its metabolic processes, which suggests it may play a role in the degradation of organic materials in oxygen-rich environments. The optimal growth temperature of 29.0°C indicates that this strain is well-suited for moderate thermal conditions, potentially aligning with habitats that experience seasonal temperature variations. ↵↵Given these traits, Sinosporangium album strain CPCC 201354 may contribute to the microbial diversity in soil or decaying organic matter, where it could participate in nutrient cycling or interact with other microorganisms. Further exploration of its ecological role could enhance our understanding of its potential applications in bioremediation or agriculture, especially in ecosystems that favor aerobic microbial activity." Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Sinosporangium Sinosporangium album Gram-positive non-motile aerobic 29 mesophilic spore-forming 504805 FNCN00000000.1 Bac0011715 Pseudomonas abietaniphila strain ATCC 700689 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas abietaniphila aerobic 89065 FNCO00000000.1 Bac0011716 Pseudomonas benzenivorans strain DSM 8628 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas benzenivorans 556533 FNCT00000000.1 Bac0011717 Bradyrhizobium sp. Rc2d Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Rc2d 1855321 FNCU00000000.1 Bac0011718 Psychroflexus sediminis strain DSM 19803 "Psychroflexus sediminis strain DSM 19803 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This strain is part of the diverse microbial community found in sedimentary environments, where it likely plays a role in the degradation of organic matter. The rod shape of Psychroflexus sediminis suggests an adaptation to its aquatic habitat, potentially facilitating motility and nutrient uptake in sedimentary matrices.↵↵As a member of the Psychroflexus genus, this strain is typically associated with cold-adapted environments, which aligns with its optimal growth temperature that is characteristic of psychrophilic organisms. The preference for aerobic conditions indicates that P. sediminis may contribute to the biogeochemical cycling of elements in its environment, particularly in processes that require oxygen, such as aerobic respiration and mineralization of organic compounds.↵↵Understanding the metabolic capabilities and ecological functions of Psychroflexus sediminis strain DSM 19803 can provide insights into its role in sediment ecosystems, particularly in cold environments where microbial activity influences the degradation of organic materials and nutrient cycling. Further research could elucidate its interactions with other microbial species and its impact on sediment health and stability." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Psychroflexus Psychroflexus sediminis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 470826 FNCW00000000.1 Bac0011719 Propionivibrio dicarboxylicus strain DSM 5885 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Propionivibrio Propionivibrio dicarboxylicus anaerobic 83767 FNCY00000000.1 Bac0011720 Winogradskyella thalassocola strain DSM 15363 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella thalassocola 262004 FNCZ00000000.1 Bac0011721 Planomicrobium glaciei strain CGMCC 1.6846 "Planomicrobium glaciei strain CGMCC 1.6846 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain is optimally adapted to temperatures around 16.0°C, suggesting a preference for cooler environments. Its Gram-positive nature indicates a thick peptidoglycan layer in the cell wall, which may contribute to its stability and resilience in specific ecological niches. ↵↵The aerobic requirement implies that P. glaciei strain CGMCC 1.6846 relies on oxygen for its metabolic processes, which could influence its distribution and activity within environments that provide sufficient oxygen levels. The non-spore-forming characteristic suggests that this microbe may rely on other strategies for survival and persistence in varying conditions, possibly including the production of biofilms or other protective structures.↵↵Given its optimal growth temperature, P. glaciei strain CGMCC 1.6846 may inhabit cold aquatic environments, such as glacial meltwaters or polar regions, where it plays a potential role in nutrient cycling. Its adaptation to low temperatures may also offer insights into the metabolic capabilities of microorganisms in extreme environments, highlighting the diversity of life forms that thrive under conditions previously thought to be inhospitable." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus glaciei Gram-positive rod aerobic 16 psychrotolerant non-spore-forming 459472 FNDC00000000.1 Bac0011722 Rhodococcus triatomae strain DSM 44892 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus triatomae 300028 FNDN00000000.1 Bac0011723 Bacteroides ovatus strain NLAE-zl-C57 "Bacteroides ovatus strain NLAE-zl-C57 is a Gram-negative, anaerobic bacterium predominantly found in the gut microbiota of various hosts. As a member of the Bacteroides genus, this strain is characterized by its ability to thrive in oxygen-free environments, which is essential for its metabolic processes. Its presence in the gut highlights its potential role in the complex microbial community that contributes to the host's digestive health and overall well-being.↵↵Bacteroides ovatus is known to engage in the fermentation of complex carbohydrates, thereby aiding in the breakdown of dietary polysaccharides and contributing to the production of short-chain fatty acids (SCFAs), such as acetate and propionate. These SCFAs play a significant role in maintaining gut health, influencing metabolic processes, and modulating the immune response. The anaerobic nature of Bacteroides ovatus strain NLAE-zl-C57 suggests that it has adapted to the gut environment, where oxygen levels are low, allowing it to coexist with other anaerobic and facultatively anaerobic microorganisms.↵↵Understanding the specific functions and interactions of Bacteroides ovatus strain NLAE-zl-C57 within the gut microbiome could provide insights into its contributions to host health, particularly in relation to nutrient absorption and immune system modulation. This strain exemplifies the intricate balance of microbial communities in the gut and underscores the importance of anaerobic bacteria in maintaining gastrointestinal homeostasis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 FNDO00000000.1 Bac0011724 Pseudomonas panipatensis strain CCM 7469 "Pseudomonas panipatensis strain CCM 7469 is a Gram-negative, non-spore-forming rod-shaped bacterium that requires oxygen for growth, indicating its aerobic nature. As a member of the Pseudomonas genus, it shares common traits with other species known for their metabolic versatility and ability to thrive in diverse environments. The rod shape of P. panipatensis may contribute to its motility and ecological adaptability, allowing it to colonize various niches.↵↵This strain, like other Pseudomonas species, may be involved in biogeochemical cycles, particularly in the degradation of organic compounds, which is a critical function in many ecosystems. Its aerobic metabolism suggests a potential role in environments where oxygen is available, such as soil or water systems, where it may participate in nutrient cycling and organic matter decomposition. ↵↵Understanding the specific physiological traits of Pseudomonas panipatensis strain CCM 7469 can provide insights into its ecological role, particularly in bioremediation processes or in the maintenance of soil health, highlighting the importance of such microorganisms in ecosystem functioning. Further research may elucidate its potential applications in environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas panipatensis Gram-negative rod aerobic non-spore-forming 428992 FNDS00000000.1 Bac0011725 Alteribacillus bidgolensis strain P4B "Alteribacillus bidgolensis strain P4B is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives in aerobic conditions, with an optimal growth temperature of 37.0°C. This strain's Gram-positive nature suggests a thicker peptidoglycan layer in its cell wall, which may contribute to its resilience and ability to form spores, allowing it to withstand adverse environmental conditions. ↵↵The aerobic requirement indicates that Alteribacillus bidgolensis strain P4B relies on molecular oxygen for its metabolism, which positions it in environments where oxygen is readily available. The optimal growth temperature of 37.0°C aligns with conditions typically found in warm-blooded animals or environments that mimic such temperatures, highlighting potential niches for this organism in nature.↵↵Given its spore-forming ability, Alteribacillus bidgolensis strain P4B may play a significant role in nutrient cycling, especially in environments subject to fluctuations in conditions that could challenge microbial survival. The capacity to form spores not only ensures its survival during periods of nutrient scarcity or environmental stress but may also facilitate its dispersal across diverse habitats. Understanding the ecological role of this strain could provide insights into its potential contributions to microbial communities, particularly in habitats characterized by dynamic environmental conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alteribacillus Alteribacillus bidgolensis Gram-positive rod non-motile aerobic 37 mesophilic spore-forming 930129 FNDU00000000.1 Bac0011726 Chryseobacterium taeanense strain DSM 17071 "Chryseobacterium taeanense strain DSM 17071 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions, which may reflect its ecological niche. The Gram-negative status of C. taeanense indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that may contribute to its adaptability in various environments.↵↵The non-spore-forming trait of this bacterium suggests that it relies on vegetative growth for reproduction and survival, which may influence its response to environmental stresses compared to spore-forming bacteria. Understanding the growth conditions and physiological traits of C. taeanense can provide insights into its potential roles in ecological systems, particularly in nutrient cycling and the degradation of organic matter.↵↵Given its optimal growth temperature and aerobic requirements, Chryseobacterium taeanense strain DSM 17071 may be well-suited to thrive in specific habitats, such as soil or aquatic environments, where organic material is available and oxygen levels are sufficient. This adaptability may allow it to play a significant role in the microbial communities of these ecosystems, particularly in processes related to organic decomposition and nutrient availability." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium taeanense Gram-negative rod aerobic 29 mesophilic non-spore-forming 311334 FNDW00000000.1 Bac0011727 Proteiniclasticum ruminis strain CGMCC 1.5058 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Proteiniclasticum Proteiniclasticum ruminis 398199 FNDZ00000000.1 Bac0011728 Lutimaribacter saemankumensis strain DSM 28010 "Lutimaribacter saemankumensis strain DSM 28010 is a Gram-negative, rod-shaped bacterium with a demonstrated optimal growth temperature of 29.0°C. This specific temperature preference suggests that the strain is well-suited to thrive in moderately warm environments, potentially reflecting its natural habitat in marine or temperate aquatic ecosystems.↵↵As a member of the genus Lutimaribacter, this strain may be involved in biogeochemical processes within its ecological niche, such as organic matter degradation or nutrient cycling. The Gram-negative cell wall structure is indicative of a potentially complex outer membrane, which could play a role in its interactions with the surrounding environment, including its responses to environmental stresses or competition with other microorganisms.↵↵Research into the physiological and biochemical characteristics of Lutimaribacter saemankumensis strain DSM 28010 could provide insights into its metabolic capabilities and ecological roles. The adaptation of this strain to specific thermal conditions may also imply a level of specialization that could influence its ecological interactions and contributions to microbial communities. Such specialized traits can be critical for understanding the dynamics of microbial life in its native habitat and may have implications for biotechnological applications or environmental monitoring." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Lutimaribacter Lutimaribacter saemankumensis Gram-negative rod non-motile 29 mesophilic 490829 FNEB00000000.1 Bac0011729 Pseudomonas delhiensis strain CCM 7361 "Pseudomonas delhiensis strain CCM 7361 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and has an optimal growth temperature of 37.0°C. As a non-spore-forming organism, it relies on vegetative growth strategies under favorable environmental conditions. ↵↵The strain exhibits the characteristic metabolic versatility associated with the Pseudomonas genus, which is well-documented for its ability to degrade a wide range of organic compounds. This trait is especially significant in bioremediation applications, where Pseudomonas species are often employed to mitigate environmental pollutants. Furthermore, the aerobic nature of Pseudomonas delhiensis suggests its potential role in soil and water ecosystems, where oxygen availability is critical for microbial activity.↵↵Given its specific growth conditions and metabolic potential, Pseudomonas delhiensis strain CCM 7361 may play a role in nutrient cycling within its habitat, contributing to the breakdown of organic materials and influencing microbial community dynamics. Understanding the ecological functions of this strain can provide insights into its contributions to biogeochemical processes in environments where it is prevalent." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas delhiensis Gram-negative rod aerobic 37 mesophilic non-spore-forming 366289 FNEC00000000.1 Bac0011730 Mesorhizobium muleiense strain CGMCC 1.11022 "Mesorhizobium muleiense strain CGMCC 1.11022 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderate warmth typically found in temperate environments. The Gram-negative nature of this microbe suggests a complex cell wall structure featuring an outer membrane containing lipopolysaccharides, which may play a crucial role in its interactions with the surrounding environment, including potential symbiotic relationships with host plants.↵↵As a member of the genus Mesorhizobium, this strain is likely involved in nitrogen fixation, a process that is essential for soil fertility and plant health. While specific symbiotic capabilities of strain CGMCC 1.11022 have not been detailed, its classification within the Mesorhizobium genus implies potential associations with leguminous plants, contributing to the enhancement of soil nitrogen levels via the formation of root nodules.↵↵The aerobic nature of Mesorhizobium muleiense strain CGMCC 1.11022 suggests that it requires oxygen for growth and energy production, which may influence its distribution in soil environments where oxygen availability is adequate. Understanding the physiological traits of this strain contributes to the broader knowledge of beneficial soil microorganisms and their roles in sustainable agricultural practices, particularly in enhancing nitrogen availability for crops." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium muleiense Gram-negative rod aerobic 29 mesophilic non-spore-forming 1004279 FNEE00000000.1 Bac0011731 Arthrobacter cupressi strain CGMCC 1.10783 "Arthrobacter cupressi strain CGMCC 1.10783 is a Gram-positive, aerobic bacterium characterized by its ovoid shape and non-spore-forming nature. This strain exhibits optimal growth at a temperature of 29.0 °C, suggesting a preference for moderate environmental conditions. Its aerobic metabolism indicates that it requires oxygen for growth and energy production, which aligns with the physiological traits typical of the Arthrobacter genus.↵↵The Gram-positive nature of A. cupressi strain CGMCC 1.10783 implies a thick peptidoglycan layer in its cell wall, which may confer resilience against certain environmental stresses. The absence of sporulation indicates that this strain relies on other survival strategies in fluctuating environments, potentially growing in nutrient-rich settings where rapid reproduction is advantageous.↵↵While the specific ecological role of A. cupressi strain CGMCC 1.10783 has not been detailed, its traits suggest that it may inhabit soil or decaying organic matter, contributing to nutrient cycling and organic matter degradation. The ability to thrive in aerobic conditions could also indicate a role in the biodegradation of organic pollutants, reflecting the broader capabilities of the Arthrobacter genus in bioremediation processes. Further studies could elucidate the ecological significance of this strain within its native habitat, particularly in relation to its interactions with other microorganisms and its potential applications in environmental microbiology." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter cupressi Gram-positive ovoid non-motile aerobic 29 mesophilic non-spore-forming 1045773 FNEI00000000.1 Bac0011732 Ferrimonas sediminum strain DSM 23317 "Ferrimonas sediminum strain DSM 23317 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and thrives optimally at a temperature of 25.0°C. This organism's Gram-negative classification is indicative of its distinctive cell wall structure, which comprises an outer membrane containing lipopolysaccharides, a characteristic feature of many environmental and clinical bacteria.↵↵As a facultative aerobe, Ferrimonas sediminum has the metabolic versatility to utilize oxygen when available, while also possessing the ability to survive in anaerobic conditions. This adaptability to varying oxygen levels suggests that the strain may play a role in diverse environments, potentially contributing to biogeochemical cycles, particularly in sedimentary habitats where oxygen gradients are common.↵↵The optimal growth temperature of 25.0°C aligns with temperate environmental contexts, which may influence its ecological interactions and metabolic processes. The ability of this bacterium to thrive in such conditions highlights its potential significance in microbial communities, particularly in sediment-rich ecosystems where it may engage in nutrient cycling or interact with other microbial species.↵↵Overall, Ferrimonas sediminum strain DSM 23317 exemplifies the ecological versatility of microbial life, showcasing the importance of environmental factors in shaping microbial physiology and community dynamics. Its presence in sedimentary environments could provide insights into the roles of bacteria in maintaining ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas sediminum Gram-negative rod facultative aerobe/anaerobe 25 mesophilic 718193 FNEM00000000.1 Bac0011733 Halomonas gudaonensis strain CGMCC 1.6133 "Halomonas gudaonensis strain CGMCC 1.6133 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on favorable environmental conditions for survival and reproduction rather than on spore-mediated resilience. ↵↵Halomonas species are typically associated with saline environments, and while specific ecological details for strain CGMCC 1.6133 are not available, the general adaptability of Halomonas to high-salinity habitats may provide insights into its potential ecological roles. The ability of this strain to flourish at a moderately elevated temperature indicates its possible involvement in biogeochemical processes in marine or estuarine ecosystems. Furthermore, the aerobic metabolic requirement highlights its dependence on oxygen-rich environments, which could influence its interactions with other microbial communities in its native habitat.↵↵Overall, Halomonas gudaonensis strain CGMCC 1.6133 exemplifies the adaptability of halophilic bacteria to specific environmental niches, potentially contributing to nutrient cycling and the overall functioning of saline ecosystems. The study of this strain may provide valuable insights into microbial diversity and resilience in extreme environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia gudaonensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 376427 FNES00000000.1 Bac0011734 Lachnospiraceae bacterium G41 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium G41 1200749 FNEU00000000.1 Bac0011735 Salimicrobium halophilum strain DSM 4771 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salimicrobium Salimicrobium halophilum 86666 FNEV00000000.1 Bac0011736 Flavobacterium noncentrifugens strain CGMCC 1.10076 "Flavobacterium noncentrifugens strain CGMCC 1.10076 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 16.0 °C. This strain belongs to the genus Flavobacterium, which is commonly characterized by its yellow-pigmented colonies and its role in aquatic environments. The aerobic nature of strain CGMCC 1.10076 suggests that it requires oxygen for its growth and metabolic processes, which is typical of many members of the Flavobacteriaceae family.↵↵The optimal growth temperature of 16.0 °C indicates that this strain may be particularly well adapted to cooler environments, potentially influencing its distribution and ecological interactions in natural aquatic habitats. Given these traits, Flavobacterium noncentrifugens strain CGMCC 1.10076 may play a role in the degradation of organic materials in its ecosystem, particularly in colder waters where it may contribute to nutrient cycling and the maintenance of microbial diversity. The specific adaptations of this strain to lower temperatures highlight its potential importance in cold-water microbiomes, where its metabolic activities could impact the overall microbial community structure and function." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium noncentrifugens Gram-negative rod non-motile aerobic 16 psychrotolerant 1128970 FNEZ00000000.1 Bac0011737 Nonomuraea maritima strain CGMCC 4.5681 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea maritima 683260 FNFB00000000.1 Bac0011738 Natronorubrum texcoconense strain B4 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum texcoconense 1095776 FNFE00000000.1 Bac0011739 Actinopolyspora mzabensis strain DSM 45460 "Actinopolyspora mzabensis strain DSM 45460 is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores and thrives in aerobic conditions. This strain demonstrates optimal growth at a temperature of 29.0 °C, indicating a preference for moderately warm environments. The spore-forming capability of A. mzabensis suggests an adaptation mechanism that allows it to survive in fluctuating environmental conditions, potentially contributing to its resilience in diverse habitats. ↵↵Given its aerobic nature, A. mzabensis likely plays a role in the degradation of organic materials in oxygen-rich ecosystems, which may facilitate nutrient cycling in its native environment. The combination of its morphological characteristics and metabolic requirements positions this strain as a candidate for further studies in microbial ecology and potential biotechnological applications. Understanding the specific ecological niches occupied by A. mzabensis could provide insight into its role within microbial communities and its interactions with other microorganisms in its habitat." Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora mzabensis Gram-positive rod non-motile aerobic 29 mesophilic spore-forming 995066 FNFM00000000.1 Bac0011740 Nocardioides sp. YR527 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. YR527 1881028 FNFN00000000.1 Bac0011741 Enterococcus casseliflavus strain NLAE-zl-C414 "Enterococcus casseliflavus strain NLAE-zl-C414 is a Gram-positive coccus that exhibits facultative anaerobic growth, typically inhabiting the intestinal tracts of various organisms. This strain, part of the Enterococcus genus, is characterized by its spherical cell shape and can thrive in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within the gut microbiome.↵↵E. casseliflavus is known for its resilience in fluctuating intestinal environments, which may facilitate its role in maintaining gut homeostasis. The facultative anaerobic nature of this strain suggests that it can utilize fermentation processes when oxygen is scarce, contributing to the metabolic diversity of gut microbiota. Understanding the specific functions and interactions of E. casseliflavus strain NLAE-zl-C414 within the intestinal ecosystem may provide insights into its potential roles in nutrient metabolism and microbial competition, as well as its involvement in the overall health of the host organism. This adaptability to both aerobic and anaerobic conditions highlights the complexity of microbial life in the intestines and underscores the importance of Enterococcus species in gut ecology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe intestines 37734 FNFS00000000.1 Bac0011742 Cryobacterium psychrotolerans strain CGMCC 1.5382 "Cryobacterium psychrotolerans strain CGMCC 1.5382 is a Gram-positive, rod-shaped bacterium characterized by its ability to thrive at an optimal temperature of 16.0°C. This strain exhibits aerobic respiration, indicating its requirement for oxygen during metabolic processes. The combination of its Gram-positive nature and psychrotolerant capabilities allows it to survive and potentially grow in cold environments, making it particularly interesting for studies on microbial life in polar and subpolar ecosystems.↵↵The physiological traits of Cryobacterium psychrotolerans suggest that it may possess unique adaptations that confer survival advantages in low-temperature habitats, where nutrient availability can be limited. Understanding the metabolic pathways and stress response mechanisms of this strain could provide valuable insights into how microorganisms adapt to extreme environments. Additionally, the study of Cryobacterium psychrotolerans may contribute to the broader understanding of microbial diversity and resilience in cold ecosystems, highlighting its potential role in biogeochemical cycles in those regions." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium psychrotolerans Gram-positive rod aerobic 16 psychrotolerant 386301 FNFU00000000.1 Bac0011743 Methylophilus rhizosphaerae strain CBMB127 "Methylophilus rhizosphaerae strain CBMB127 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and does not form spores. This strain thrives optimally at a temperature of 29.0°C, indicating its potential adaptation to moderately warm environments. The non-spore-forming nature of M. rhizosphaerae suggests that it relies on other survival strategies in response to environmental stressors, as it lacks the ability to enter a dormant state typically associated with sporulation.↵↵The aerobic requirement of this microbe indicates its reliance on oxygen for metabolic processes, positioning it within environments where oxygen is readily available. This trait may influence its distribution and interaction with other microbial communities in its native habitat. ↵↵Given its characteristics, Methylophilus rhizosphaerae strain CBMB127 may play a role in nutrient cycling within its ecosystem, particularly in the rhizosphere, where it could interact with plant roots and contribute to the overall health of the soil microbiome. This could be particularly relevant in the context of plant-microbe interactions, as its metabolic processes may impact plant nutrient availability and growth dynamics. Further research could explore the specific ecological roles and interactions of this strain in its natural habitat, providing insights into its potential benefits to plant health and soil fertility." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylophilus Methylophilus rhizosphaerae Gram-negative rod aerobic 29 mesophilic non-spore-forming 492660 FNFX00000000.1 Bac0011744 Sarcina sp. DSM 11001 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Sarcina Sarcina sp. DSM 11001 anaerobic 1798184 FNFZ00000000.1 Bac0011745 Arthrobacter sp. ov407 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. ov407 1761748 FNGD00000000.1 Bac0011746 Paracoccus chinensis strain CGMCC 1.7655 "Paracoccus chinensis strain CGMCC 1.7655 is a Gram-negative, ovoid-shaped bacterium that exhibits aerobic metabolism. This strain is non-spore-forming and thrives optimally at a temperature of 32.0°C. ↵↵As a member of the genus Paracoccus, this strain is likely to engage in various biochemical processes, potentially including the reduction of nitrate and the utilization of diverse organic compounds, which is characteristic of many Paracoccus species. Its Gram-negative cell wall structure may confer resilience against certain environmental stresses, while its aerobic nature suggests a dependence on oxygen for energy production, positioning it as a potential player in aerobic biogeochemical cycles.↵↵The optimal growth temperature of 32.0°C indicates that Paracoccus chinensis strain CGMCC 1.7655 may inhabit environments that are moderately warm, likely reflecting its adaptability to various ecological niches. This characteristic could facilitate its role in microbial communities, particularly in soil or aquatic systems where organic matter decomposition occurs. Understanding the metabolic capabilities and environmental preferences of this strain could provide insights into its potential applications in biotechnology or bioremediation, where aerobic processes are essential for the breakdown of pollutants." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus chinensis Gram-negative ovoid aerobic 32 mesophilic non-spore-forming 525640 FNGE00000000.1 Bac0011747 Halomonas pantelleriensis strain AAP Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Franzmannia Franzmannia pantelleriensis 48727 FNGH00000000.1 Bac0011748 Tessaracoccus oleiagri strain CGMCC 1.9159 "Tessaracoccus oleiagri strain CGMCC 1.9159 is a Gram-positive, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen environments. This strain is non-spore-forming and prefers an optimal growth temperature of 29.0°C. The ability to adapt to both aerobic and anaerobic conditions suggests a versatile metabolic capacity, potentially enabling it to utilize a range of organic substrates for energy.↵↵The Gram-positive nature of T. oleiagri indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in diverse environments. While the specific ecological niches of this strain have not been thoroughly explored, its adaptability implies potential roles in various biogeochemical cycles, particularly in environments where organic matter is abundant. ↵↵Understanding the metabolic pathways and ecological interactions of T. oleiagri could provide valuable insights into its potential applications in bioremediation or as a biocatalyst in organic waste management. Further research is warranted to elucidate its specific ecological functions and to explore its potential utility in industrial or environmental microbiology." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus oleiagri Gram-positive rod non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 686624 FNGP00000000.1 Bac0011749 Siphonobacter aquaeclarae strain DSM 21668 "Siphonobacter aquaeclarae strain DSM 21668 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism. This organism thrives optimally at a temperature of 32.0 °C, indicating a preference for moderate thermal conditions often found in aquatic environments. The Gram-negative characteristic suggests that the bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, which may play a role in its adaptability to varying oxygen levels.↵↵The facultative nature of S. aquaeclarae strain DSM 21668 allows it to utilize both aerobic and anaerobic respiration, enabling it to survive in diverse ecological niches, particularly in environments where oxygen availability fluctuates. This metabolic versatility could provide a competitive advantage in natural habitats, potentially allowing it to exploit organic substrates under different redox conditions.↵↵Moreover, the ability to thrive at an optimal temperature of 32.0 °C suggests that S. aquaeclarae is well-suited to environments that are warm but not extreme, potentially aligning it with freshwater ecosystems. Understanding the physiological traits of S. aquaeclarae may contribute to insights into its ecological role within microbial communities, particularly in the degradation of organic matter under varying oxygen conditions. This adaptability could have implications for biogeochemical cycles in freshwater habitats, highlighting the significance of such microorganisms in nutrient cycling and ecosystem dynamics." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Siphonobacter Siphonobacter aquaeclarae Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic 563176 FNGS00000000.1 Bac0011750 Geoalkalibacter ferrihydriticus strain DSM 17813 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter ferrihydriticus 392333 FNGU00000000.1 Bac0011751 Kriegella aquimaris strain DSM 19886 "Kriegella aquimaris strain DSM 19886 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is characterized by its rod morphology, which is typical of many members within the family of bacteria it belongs to. As a strictly aerobic microbe, K. aquimaris relies on oxygen for its metabolic processes, which may influence its habitat preferences and interactions within its ecosystem.↵↵The strain DSM 19886 is part of the larger genus Kriegella, known for its diverse environmental adaptations. The non-spore-forming nature of this bacterium suggests that it may be less resilient to extreme environmental stresses compared to spore-forming bacteria, potentially impacting its survival in fluctuating habitats. The optimal growth temperature of 25.0°C indicates a preference for mesophilic conditions, which may align with its isolation from marine or coastal environments, where temperatures are frequently within this range.↵↵Understanding the traits of K. aquimaris can provide insights into its ecological role, particularly in marine ecosystems. Its aerobic nature may contribute to nutrient cycling and energy flow within these environments, highlighting the importance of such microorganisms in maintaining ecological balance. Further research could elucidate its specific interactions with other marine microbes and its potential contributions to the overall health of marine habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Kriegella Kriegella aquimaris Gram-negative rod motile aerobic 25 mesophilic non-spore-forming 192904 FNGV00000000.1 Bac0011752 Pedobacter steynii strain DSM 19110 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter steynii 430522 FNGY00000000.1 Bac0011753 Dendrosporobacter quercicolus strain DSM 1736 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Dendrosporobacter Dendrosporobacter quercicolus anaerobic 146817 FNHB00000000.1 Bac0011754 Sediminibacillus halophilus strain CGMCC 1.6199 "Sediminibacillus halophilus strain CGMCC 1.6199 is a Gram-positive, rod-shaped bacterium that exhibits facultative aerobic and anaerobic growth. This strain does not form spores, distinguishing it from various other bacterial taxa that employ sporulation as a survival strategy. It thrives optimally at a temperature of 37.0°C, indicating a preference for mesophilic conditions, which is typical for many bacteria found in diverse environments.↵↵The facultative nature of S. halophilus suggests that it can adapt to varying oxygen levels, allowing it to inhabit different ecological niches where oxygen availability may fluctuate. This adaptability may enhance its survival in various habitats, potentially including saline environments, as implied by its species designation ""halophilus."" ↵↵The combination of its Gram-positive nature and metabolic flexibility positions Sediminibacillus halophilus strain CGMCC 1.6199 as a candidate for further study in biotechnological applications, particularly in processes that require the breakdown of organic materials under varying oxygen conditions. Understanding its physiological traits may provide insights into its role in nutrient cycling in halophilic ecosystems, contributing to our broader knowledge of microbial diversity and functionality in such environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Sediminibacillus Sediminibacillus halophilus Gram-positive rod facultative aerobe/anaerobe 37 mesophilic non-spore-forming 482461 FNHF00000000.1 Bac0011755 Pedobacter ruber strain DSM 24536 "Pedobacter ruber strain DSM 24536 is a Gram-negative, non-spore-forming rod that thrives in aerobic conditions, with an optimal growth temperature of 16.0 °C. This organism belongs to the genus Pedobacter, which is recognized for its diverse metabolic capabilities and adaptability to various environments, particularly in cooler temperatures. ↵↵As a member of the family Sphingobacteriaceae, Pedobacter ruber exhibits traits typical of its relatives, including a preference for nutrient-rich environments. The absence of sporulation suggests that this strain may rely on other survival strategies in adverse conditions, possibly including metabolic versatility or the formation of resilient biofilms. ↵↵The specific growth temperature of 16.0 °C indicates that Pedobacter ruber may be particularly suited for life in colder habitats, such as soil or aquatic environments, where temperatures are typically lower. This trait may confer ecological advantages in nutrient cycling and decomposition processes in such ecosystems. ↵↵Overall, the characteristics of Pedobacter ruber strain DSM 24536 underscore its potential role in biogeochemical cycles, particularly in arctic or subarctic environments, where microbial activity is crucial for the breakdown of organic matter and nutrient availability during colder months. Further studies may reveal additional insights into its ecological functions and contributions to microbial community dynamics." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Daejeonella Daejeonella rubra Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 990371 FNHH00000000.1 Bac0011756 Streptomyces wuyuanensis strain CGMCC 4.7042 "Streptomyces wuyuanensis strain CGMCC 4.7042 is a Gram-positive, spore-forming bacterium characterized by its curved to spiral morphology. This strain demonstrates an optimal growth temperature of 29.0°C and requires aerobic conditions for its metabolic activities. As a member of the genus Streptomyces, it is anticipated to possess the ability to produce a variety of secondary metabolites, although specific compounds have not been detailed in the available data.↵↵The curved and spiral shape of S. wuyuanensis suggests adaptations that may enhance its motility or colonization efficiency in its natural habitat, which is often rich in organic matter. The capability for sporulation indicates that this strain can survive in unfavorable environmental conditions, allowing it to persist in diverse ecological niches. This trait is particularly significant for soil-dwelling microbes, where fluctuations in moisture and nutrient availability can be pronounced.↵↵The optimal growth temperature of 29.0°C aligns with conditions commonly found in temperate ecosystems, suggesting that S. wuyuanensis may play a role in nutrient cycling within these environments. The aerobic nature of this strain indicates its involvement in aerobic processes, potentially contributing to the degradation of organic materials and the recycling of nutrients in soil ecosystems. Overall, S. wuyuanensis strain CGMCC 4.7042 exemplifies the ecological versatility characteristic of Streptomyces species, highlighting its potential significance in soil health and sustainability." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces wuyuanensis Gram-positive curved/spiral non-motile aerobic 29 mesophilic spore-forming 1196353 FNHI00000000.1 Bac0011757 Bacillus sp. OK048 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. OK048 1882761 FNHN00000000.1 Bac0011758 Alicycliphilus sp. EPL6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Oryzisolibacter Oryzisolibacter propanilivorax 1527607 FNHP00000000.1 Bac0011759 Methylobacterium phyllostachyos strain BL47 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium phyllostachyos 582672 FNHS00000000.1 Bac0011760 Pseudomonas sp. BS3759 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. BS3759 1882755 FNHT00000000.1 Bac0011761 Actinomyces ruminicola strain KPR-7B Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces ruminicola anaerobic 332524 FNHU00000000.1 Bac0011762 Polaromonas sp. JS666 strain JS666 UNC47MFTsu3.1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. JS666 296591 FNHX00000000.1 Bac0011763 Psychrobacillus sp. OK028 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Psychrobacillus Psychrobacillus sp. OK028 1884359 FNHY00000000.1 Bac0011764 Haloarchaeobius iranensis strain EB21 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halorubellaceae Haloarchaeobius Haloarchaeobius iranensis 996166 FNIA00000000.1 Bac0011765 Acetanaerobacterium elongatum strain CGMCC 1.5012 "Acetanaerobacterium elongatum strain CGMCC 1.5012 is a Gram-positive, rod-shaped bacterium that thrives under strictly anaerobic conditions and has an optimal growth temperature of 37.0°C. As a non-spore-forming organism, it relies on its anaerobic metabolism for energy generation. The Gram-positive nature of this strain suggests a thick peptidoglycan layer in its cell wall, which is characteristic of this bacterial group and may contribute to its structural integrity in anaerobic environments.↵↵Due to its anaerobic requirement, Acetanaerobacterium elongatum strain CGMCC 1.5012 likely plays a role in environments where oxygen is limited, such as in the human gut or in various anaerobic fermentation processes. Its metabolic capabilities may allow it to participate in the breakdown of complex organic materials, contributing to nutrient cycling in its ecological niche. Understanding the specific metabolic pathways utilized by this strain could shed light on its potential applications in biotechnology, particularly in the realms of waste treatment and bioenergy production, where anaerobic processes are essential." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Acetanaerobacterium Acetanaerobacterium elongatum Gram-positive rod anaerobic 37 mesophilic non-spore-forming 258515 FNID00000000.1 Bac0011766 Streptomyces guanduensis strain CGMCC 4.2022 "Streptomyces guanduensis strain CGMCC 4.2022 is a Gram-positive, rod-shaped bacterium known for its ability to form spores. This strain thrives under aerobic conditions and exhibits optimal growth at a temperature of 32.0°C. Characteristic of the genus Streptomyces, S. guanduensis is likely to possess a complex life cycle that includes the production of spores, which are critical for its survival in various environments.↵↵The ability to form spores not only aids in the dissemination of this microbe in its habitat but may also provide resilience against unfavorable conditions, allowing it to endure periods of nutrient limitation or desiccation. The aerobic nature of this strain suggests a metabolic reliance on oxygen for growth, which could influence its distribution and ecological roles in soil or other oxygen-rich environments.↵↵Overall, the traits exhibited by Streptomyces guanduensis strain CGMCC 4.2022 indicate its potential importance in natural ecosystems, particularly regarding nutrient cycling and soil health, as well as its utility in biotechnological applications where aerobic spore-forming organisms are advantageous." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila guanduensis Gram-positive rod non-motile aerobic 32 mesophilic spore-forming 310781 FNIE00000000.1 Bac0011767 Bacillus daliensis strain CGMCC 1.10369 "Bacillus daliensis strain CGMCC 1.10369 is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, a characteristic feature of the Bacillus genus. This strain is capable of thriving in both aerobic and anaerobic environments, reflecting its facultative metabolic versatility. The optimal growth temperature for B. daliensis strain CGMCC 1.10369 is approximately 29.0°C, suggesting a preference for moderate warmth, which may facilitate its growth in diverse ecological niches.↵↵The spore-forming capability of this strain is particularly significant, as spores enable the bacterium to withstand adverse environmental conditions, including nutrient deprivation and desiccation. This trait not only aids in survival but also potentially contributes to the bacterium's dispersal and colonization of various habitats.↵↵Understanding the growth conditions and metabolic strategies of Bacillus daliensis strain CGMCC 1.10369 can provide insights into its ecological roles, particularly in soil and decaying organic matter, where it may play a part in nutrient cycling and organic matter decomposition. Further investigation into this strain's specific interactions within its ecosystem could illuminate its contributions to microbial community dynamics and soil health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalicoccus Alkalicoccus daliensis Gram-positive rod facultative aerobe/anaerobe 29 mesophilic spore-forming 745820 FNIL00000000.1 Bac0011768 Desulfonauticus submarinus strain DSM 15269 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfonauticaceae Desulfonauticus Desulfonauticus submarinus anaerobic 206665 FNIN00000000.1 Bac0011769 Aureimonas jatrophae strain L7-484 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas jatrophae 1166073 FNIT00000000.1 Bac0011770 Halomonas shengliensis strain CGMCC 1.6444 "Halomonas shengliensis strain CGMCC 1.6444 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0 °C and requires aerobic conditions for growth. This strain is part of the genus Halomonas, which is known for its halophilic characteristics, suggesting a potential adaptability to saline environments. The rod shape of H. shengliensis may contribute to its motility and nutrient acquisition in diverse ecological niches.↵↵The requirement for aerobic conditions indicates that this microbe utilizes oxygen for its metabolic processes, which may influence its habitat preferences and interactions within microbial communities. The optimal growth temperature of 29.0 °C positions this organism within a range that is typical for many mesophilic bacteria, suggesting that it may be well-suited for environments that experience moderate thermal conditions, possibly including coastal areas or saline environments with fluctuating temperatures.↵↵Understanding the physiological traits of Halomonas shengliensis strain CGMCC 1.6444 can provide insights into its potential roles in biogeochemical cycles, particularly in saline ecosystems where oxygen-rich conditions prevail. This bacterium may contribute to nutrient cycling and organic matter degradation, thereby playing a crucial role in maintaining the ecological balance in its native habitat. Further studies could elucidate its interactions with other microbial species and its potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas shengliensis Gram-negative rod aerobic 29 mesophilic 419597 FNIV00000000.1 Bac0011771 Prevotella sp. BP1-145 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella communis 2913614 FNIW00000000.1 Bac0011772 Phyllobacterium sp. OV277 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium sp. OV277 1882772 FNIY00000000.1 Bac0011773 Halobacillus aidingensis strain CGMCC 1.3703 "Halobacillus aidingensis strain CGMCC 1.3703 is a Gram-positive, rod-shaped bacterium distinguished by its ability to form spores. This trait enables the organism to survive in various environmental conditions, contributing to its resilience. The optimal growth temperature for this strain is 32.0°C, suggesting a preference for moderately warm environments, which may influence its habitat and potential applications in biotechnology.↵↵As a member of the Halobacillus genus, this strain likely thrives in saline environments, aligning with the characteristics typically associated with halophilic bacteria. The ability to form spores is particularly significant, as it allows the organism to endure extreme conditions, including desiccation and nutrient deprivation, which are common in its native habitats.↵↵This strain's unique combination of traits, including its Gram-positive nature and spore-forming capability, positions it as a potential candidate for biotechnological applications, particularly in the fields of bioremediation and the production of bioactive compounds. The adaptability of Halobacillus aidingensis strain CGMCC 1.3703 to moderate temperatures and its resilience against environmental stressors may also provide insights into microbial survival strategies in saline ecosystems. Such characteristics could inform further research into the ecological roles of halophilic bacteria in nutrient cycling and their potential uses in industrial processes where salt tolerance is advantageous." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus aidingensis Gram-positive rod motile 32 mesophilic spore-forming 240303 FNIZ00000000.1 Bac0011774 Albidiferax sp. OV413 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sp. OV413 1855285 FNJA00000000.1 Bac0011775 Pseudomonas guguanensis strain JCM 18416 "Pseudomonas guguanensis strain JCM 18416 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This strain is part of the diverse Pseudomonas genus, which is known for its metabolic versatility and ability to thrive in various environments. The Gram-negative cell wall structure of P. guguanensis likely contributes to its resilience in different ecological niches, allowing it to adapt to varying conditions.↵↵As an aerobic organism, P. guguanensis requires oxygen for growth and energy production, which may influence its habitat preferences, often favoring environments where oxygen is readily available. The rod shape of this bacterium is typical of many species within the Pseudomonas genus and may provide advantages in motility and nutrient acquisition in aqueous environments.↵↵Research on P. guguanensis could provide insights into its potential applications in bioremediation or biotechnology, given the broader capabilities of Pseudomonas species in degrading pollutants and synthesizing valuable compounds. Furthermore, the ecological role of Pseudomonas guguanensis in its native habitat may involve interactions with other microorganisms or participation in nutrient cycling, highlighting the importance of understanding the ecological functions of less-studied strains within this genus." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas guguanensis Gram-negative rod aerobic 1198456 FNJJ00000000.1 Bac0011776 Streptococcus equinus strain Sb04 "Streptococcus equinus strain Sb04 is a Gram-positive, cocci-shaped bacterium characterized as a facultative anaerobe. This strain is commonly found in diverse habitats, including dairy farms, dairy products, and the gastrointestinal tracts of ruminants, particularly within the rumen. Its presence in these environments suggests a role in the fermentation processes associated with dairy production and ruminant digestion.↵↵As a facultative anaerobe, S. equinus strain Sb04 can thrive in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels encountered in the rumen and during the fermentation of dairy products. This adaptability may contribute to its ability to persist in the digestive systems of ruminants, where it could play a role in the breakdown of complex carbohydrates and the overall microbial ecology of the rumen.↵↵The association of S. equinus strain Sb04 with dairy farms and products highlights its potential significance in the dairy industry, possibly influencing the quality and characteristics of dairy products. Furthermore, its presence in the gastrointestinal tracts of ruminants suggests a potential symbiotic relationship, where the bacterium may aid in digestion and nutrient absorption while benefiting from the host's environment. Understanding the ecological role of S. equinus strain Sb04 may provide insights into the dynamics of microbial communities in ruminant digestion and their implications for agricultural practices." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe dairy farms; dairy products; gastrointestinal tracts of ruminants; rumen 1335 FNJK00000000.1 Bac0011777 Phyllobacterium sp. YR620 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium sp. YR620 1881066 FNJP00000000.1 Bac0011778 Selenomonas ruminantium strain S137 "Selenomonas ruminantium strain S137 is a Gram-negative, nonsporulating anaerobic bacterium that thrives as a chemoheterotroph within the intestinal microflora of animals, with an optimal growth temperature of 37.0 °C. This species is part of the diverse microbial community found in the digestive systems of ruminants, where it plays a crucial role in the fermentation process, contributing to the breakdown of complex carbohydrates and the overall efficiency of nutrient absorption. ↵↵As an anaerobe, Selenomonas ruminantium strain S137 relies on an oxygen-free environment to sustain its metabolic activities, which is characteristic of many bacteria residing in the gastrointestinal tracts of animals. The presence of this strain in the gut microbiome underscores the intricate relationships that exist between various microbial species and their hosts, highlighting the importance of microbial diversity in maintaining gut health and facilitating digestion. ↵↵Moreover, the ecological role of Selenomonas ruminantium strain S137 may extend beyond nutrient processing, potentially influencing the host's immune responses and overall metabolic functions. Understanding the specific contributions of this strain could provide valuable insights into the complex interactions within the rumen ecosystem and their implications for animal health and nutrition." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas ruminantium Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 970 FNJQ00000000.1 Bac0011779 Streptococcus sp. NLAE-zl-C503 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. NLAE-zl-C503 1855327 FNJT00000000.1 Bac0011780 Bacillus salsus strain IBRC-M10078 "Bacillus salsus strain IBRC-M10078 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives in aerobic conditions at an optimal temperature of 37.0 °C. As a member of the Bacillus genus, it is likely to possess traits associated with survival in diverse environments, including the formation of endospores that enable it to withstand extreme conditions.↵↵The Gram-positive nature of this strain suggests a thick peptidoglycan layer in its cell wall, which can contribute to its resilience and may be associated with specific biochemical pathways that facilitate its growth and survival in oxygen-rich environments. The ability to form spores is particularly significant, as it allows the organism to enter a dormant state during unfavorable conditions, thereby enhancing its persistence in various ecological niches.↵↵Understanding the growth characteristics of Bacillus salsus strain IBRC-M10078 can provide insights into its potential roles in natural ecosystems, possibly contributing to nutrient cycling or interaction with other microbial communities. Given its optimal growth temperature of 37.0 °C, this strain may be well-suited for environments that mimic mammalian body temperatures, which could influence its ecological interactions, such as in the rhizosphere or as part of the microbiota of warm-blooded animals." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Litchfieldia Litchfieldia salsa Gram-positive rod aerobic 37 mesophilic spore-forming 930152 FNJU00000000.1 Bac0011781 Mucilaginibacter sp. OK268 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp. OK268 1881048 FNJV00000000.1 Bac0011782 Carnobacterium viridans strain MPL-11 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium viridans 174587 FNJW00000000.1 Bac0011783 Prevotella sp. khp1 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. khp1 1761884 FNJZ00000000.1 Bac0011784 Leucobacter chromiiresistens strain DSM 22788 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter chromiiresistens 1079994 FNKB00000000.1 Bac0011785 Virgibacillus salinus strain CGMCC 1.10449 "Virgibacillus salinus strain CGMCC 1.10449 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolism. This strain demonstrates optimal growth at a temperature of 37.0°C, indicating a preference for mesophilic conditions. As a member of the Virgibacillus genus, strain CGMCC 1.10449 is likely to thrive in environments where conditions are moderately warm, and adequate oxygen is available for metabolic processes.↵↵The ability to form spores suggests that this strain possesses mechanisms for survival under adverse environmental conditions, potentially allowing it to withstand desiccation and nutrient deprivation. Such traits are common among bacteria that inhabit fluctuating environments, where sporulation provides a strategy for persistence.↵↵Furthermore, the aerobic nature of Virgibacillus salinus strain CGMCC 1.10449 suggests its involvement in oxygen-rich habitats, possibly contributing to biogeochemical cycles in such environments. Its physiological traits may also support its role in various industrial applications, particularly in bioprocessing or bioremediation, where robustness and adaptability are essential.↵↵Overall, the characteristics of Virgibacillus salinus strain CGMCC 1.10449 underscore its potential ecological versatility, enabling it to occupy niches where aerobic conditions prevail and to endure environmental stresses through sporulation." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus salinus Gram-positive rod aerobic 37 mesophilic spore-forming 553311 FNKD00000000.1 Bac0011786 Streptococcus equinus strain Sb05 "Streptococcus equinus strain Sb05 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic growth, making it adaptable to varying oxygen levels. This strain is commonly found in environments associated with ruminants, including the gastrointestinal tracts of these animals, as well as in dairy farms and dairy products. Its presence in the rumen suggests a role in the complex microbial community that aids in the digestion of fibrous plant materials, potentially contributing to the fermentation processes that are vital for ruminant nutrition.↵↵The ability of S. equinus strain Sb05 to thrive in both aerobic and anaerobic conditions enhances its survival and activity in diverse environments, particularly within the rumen where oxygen levels can fluctuate. This adaptability may allow the strain to utilize a variety of substrates, which can be beneficial in the breakdown of complex carbohydrates.↵↵Understanding the habitat and physiological traits of S. equinus strain Sb05 provides insights into its potential roles in the gastrointestinal microbiota of ruminants. The bacterium's association with dairy products also raises questions about its implications in dairy fermentation processes and its overall impact on the health and productivity of ruminant livestock. Further investigation into this strain could elucidate its contributions to microbial ecosystems and its potential applications in dairy science." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe dairy farms; dairy products; gastrointestinal tracts of ruminants; rumen 1335 FNKE00000000.1 Bac0011787 Pseudomonas moorei strain BS3775 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas moorei 395599 FNKJ00000000.1 Bac0011788 Chryseobacterium soldanellicola strain DSM 17072 "Chryseobacterium soldanellicola strain DSM 17072 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits a strict aerobic metabolism and thrives optimally at a temperature of 29.0°C. This strain is characterized by its rod morphology, which is typical of many members within the Chryseobacterium genus. ↵↵As a Gram-negative organism, C. soldanellicola possesses an outer membrane composed of lipopolysaccharides, contributing to its structural integrity and influencing its interactions with the environment. The aerobic nature of this microbe indicates its reliance on oxygen for growth and energy production, distinguishing it from anaerobic or facultatively anaerobic microorganisms. The optimal growth temperature suggests that it may inhabit mesophilic environments, potentially including soil or aquatic ecosystems, where such conditions are prevalent.↵↵While specific ecological roles of C. soldanellicola strain DSM 17072 are not detailed here, the traits observed could imply a functional capacity in nutrient cycling or organic matter decomposition in its native habitat. Further investigations into its metabolic pathways and interactions within microbial communities could provide insights into its ecological significance and potential biotechnological applications." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium soldanellicola Gram-negative rod aerobic 29 mesophilic non-spore-forming 311333 FNKL00000000.1 Bac0011789 Microbacterium sp. cf332 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. cf332 1761804 FNKN00000000.1 Bac0011790 Actinopolyspora saharensis strain DSM 45459 Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora saharensis aerobic 995062 FNKO00000000.1 Bac0011791 Halopelagius longus strain CGMCC 1.12397 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopelagius Halopelagius longus 1236180 FNKQ00000000.1 Bac0011792 Paraburkholderia tuberum strain DUS833 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia tuberum aerobic 157910 FNKX00000000.1 Bac0011793 Pseudoxanthomonas sp. CF385 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas sp. CF385 1881042 FNKZ00000000.1 Bac0011794 Rhizobiales bacterium GAS113 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium GAS113 1884352 FNLG00000000.1 Bac0011795 Actinomyces meyeri strain DSM 20733 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia meyeri submucosal sulcus 52773 FNLK00000000.1 Bac0011796 Gordonia westfalica strain DSM 44215 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia westfalica aerobic 29 mesophilic 158898 FNLM00000000.1 Bac0011797 Burkholderia sp. JS23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Chitinasiproducens Chitinasiproducens palmae 1770053 FNLO00000000.1 Bac0011798 Methanohalophilus halophilus strain Z-7982 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus halophilus 2177 FNMU00000000.1 Bac0011799 Paracoccus sanguinis strain DSM 29303 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sanguinis 1545044 FNNA00000000.1 Bac0011800 Sulfitobacter pontiacus strain DSM 10014 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter pontiacus aerobic 60137 FNNB00000000.1 Bac0011801 Marinobacter mobilis strain CGMCC 1.7059 "Marinobacter mobilis strain CGMCC 1.7059 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 32.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and growth.↵↵As a member of the Marinobacter genus, this strain likely inhabits marine environments, where its metabolic activities may play a role in biogeochemical cycles, particularly in the degradation of organic matter. The aerobic nature of Marinobacter mobilis indicates its potential involvement in processes such as nutrient cycling and organic carbon degradation, which are crucial for maintaining the health of marine ecosystems. ↵↵Furthermore, the optimal growth temperature of 32.0°C positions this microbe within a range that may facilitate its adaptation to specific niches in warm marine habitats. Understanding the physiological traits of Marinobacter mobilis strain CGMCC 1.7059 can provide insights into its ecological role and potential applications in biotechnology, particularly in processes that require aerobic microbial action." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter mobilis Gram-negative rod aerobic 32 mesophilic non-spore-forming 488533 FNNE00000000.1 Bac0011802 Ruegeria mobilis strain DSM 23403 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tritonibacter Tritonibacter mobilis 379347 FNNK00000000.1 Bac0011803 Hydrobacter penzbergensis strain DSM 25353 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Hydrobacter Hydrobacter penzbergensis 1235997 FNNO00000000.1 Bac0011804 Paenibacillus sp. PDC88 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. PDC88 1884375 FNNT00000000.1 Bac0011805 Paenibacillus sp. CF384 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. CF384 1884382 FNNV00000000.1 Bac0011806 Thiocapsa roseopersicina strain DSM 217 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thiocapsa Thiocapsa roseopersicina anaerobic 1058 FNNZ00000000.1 Bac0011807 Amycolatopsis xylanica strain CPCC 202699 "Amycolatopsis xylanica strain CPCC 202699 is a Gram-positive, spore-forming bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This strain, belonging to the genus Amycolatopsis, is characterized by its ability to produce spores, which are essential for its survival in varying environmental conditions. The Gram-positive nature of A. xylanica indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience and stability under aerobic conditions.↵↵The optimal growth temperature suggests that A. xylanica has adapted to a moderately warm environment, which may be relevant to its ecological niche. As an aerobic organism, it relies on the presence of oxygen for its metabolic processes, which influences its habitat preferences and interactions with other microorganisms. The ability of this strain to form spores may also play a crucial role in its dispersal and survival strategies, allowing it to withstand unfavorable conditions.↵↵In a broader ecological context, the traits of A. xylanica strain CPCC 202699 suggest that it may be involved in the decomposition of organic matter in its environment, potentially contributing to nutrient cycling. The specific adaptations of this strain to aerobic conditions and its ability to form spores may indicate its role in soil health and microbial communities, highlighting the importance of such microbes in maintaining ecological balance." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis xylanica Gram-positive non-motile aerobic 29 mesophilic spore-forming 589385 FNON00000000.1 Bac0011808 Collimonas sp. OK242 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas sp. OK242 1798195 FNOR00000000.1 Bac0011809 Pseudomonas salomonii strain ICMP 14252 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas salomonii 191391 FNOX00000000.1 Bac0011810 Halopenitus persicus strain DC30 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopenitus Halopenitus persicus 1048396 FNPC00000000.1 Bac0011811 Anaerobaculum thermoterrenum DSM 13490 Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium thermoterrenum 1120986 FNPD00000000.1 Bac0011812 Citreimonas salinaria strain DSM 26880 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Citreimonas Citreimonas salinaria 321339 FNPF00000000.1 Bac0011813 Micromonospora pattaloongensis strain DSM 45245 "Micromonospora pattaloongensis strain DSM 45245 is a Gram-positive, spore-forming bacterium characterized by its optimal growth temperature of 29.0°C. This strain belongs to the genus Micromonospora, which is known for its diverse ecological roles and ability to thrive in various environments, particularly in soil and decaying organic matter. The Gram-positive nature of M. pattaloongensis indicates the presence of a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can withstand harsh environmental conditions.↵↵As a spore-forming organism, M. pattaloongensis has the capability to produce spores that allow it to survive unfavorable conditions, thereby enhancing its resilience and potential for long-term persistence in diverse habitats. The optimal growth temperature of 29.0°C suggests that this strain may be well-adapted to warm environments, which could influence its distribution and ecological interactions.↵↵The ability of M. pattaloongensis to form spores and thrive at moderate temperatures may provide it with a competitive advantage in nutrient-rich ecosystems where organic matter is abundant. This capability could facilitate its role in the decomposition of organic materials, contributing to nutrient cycling and soil health. Further studies on this strain could elucidate its specific ecological functions and potential applications in biotechnological processes, such as bioremediation or the production of bioactive compounds." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora pattaloongensis Gram-positive non-motile 29 mesophilic spore-forming 405436 FNPH00000000.1 Bac0011814 Nitrosomonas sp. Nm33 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Nm33 133724 FNPJ00000000.1 Bac0011815 Tindallia californiensis strain APO Bacillati Bacillota Clostridia Peptostreptococcales Tindalliaceae Tindallia Tindallia californiensis anaerobic 159292 FNPV00000000.1 Bac0011816 Herbiconiux ginsengi strain CGMCC 4.3491 "Herbiconiux ginsengi strain CGMCC 4.3491 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolic characteristics and is non-spore-forming. This strain thrives optimally at a temperature of 29.0 °C, suggesting a preference for moderate warmth, which may align with its potential habitats in environments that support the growth of similar microbial communities. ↵↵The Gram-positive nature of H. ginsengi strain CGMCC 4.3491 indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria and may contribute to its resilience in various environmental conditions. The aerobic requirement implies that this strain relies on oxygen for its metabolic processes, potentially influencing its ecological niches and interactions with other microorganisms.↵↵Given its specific growth conditions and morphological traits, H. ginsengi strain CGMCC 4.3491 may play a role in the degradation of organic matter or nutrient cycling within its ecosystem, particularly in environments where oxygen is readily available. This highlights the potential ecological significance of aerobic Gram-positive bacteria in maintaining the balance of microbial communities in their native habitats." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Herbiconiux Herbiconiux ginsengi Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 381665 FNPZ00000000.1 Bac0011817 Bacillus sp. 166amftsu Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 166amftsu 1761753 FNQA00000000.1 Bac0011818 Selenomonas ruminantium strain DSM 2872 "Selenomonas ruminantium strain DSM 2872 is a Gram-negative, nonsporulating anaerobic bacterium that primarily inhabits the intestinal microflora of animals. This strain exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources, which is typical for many gut-associated microbes. The optimal growth temperature for S. ruminantium strain DSM 2872 is 37.0 °C, aligning with the physiological conditions found within the intestinal environment of host animals.↵↵As a member of the ruminant gut microbiome, S. ruminantium plays a significant role in the fermentation processes that are vital for the digestion of fibrous plant materials. By contributing to the breakdown of complex carbohydrates, this bacterium facilitates nutrient absorption and energy production for its host. The ability to thrive in anaerobic conditions further emphasizes its adaptation to the gut environment, where oxygen levels are typically low.↵↵Understanding the traits of Selenomonas ruminantium strain DSM 2872 may provide insights into the complex interactions within the gut microbiome, particularly in relation to fermentation dynamics and nutrient cycling. This strain's role as a chemoheterotroph in anaerobic conditions highlights the interconnectedness of microbial communities in maintaining host health and facilitating digestion, suggesting potential avenues for exploring microbial contributions to ruminant nutrition and overall gut function." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas ruminantium Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 970 FNQG00000000.1 Bac0011819 Rubrimonas cliftonensis strain DSM 15345 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rubrimonas Rubrimonas cliftonensis 89524 FNQM00000000.1 Bac0011820 Microbulbifer marinus strain CGMCC 1.10657 "Microbulbifer marinus strain CGMCC 1.10657 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for moderately warm environments, which may be indicative of its natural habitat. As a member of the genus Microbulbifer, this strain is likely adapted to marine conditions, aligning with the ecological traits commonly associated with this group.↵↵The Gram-negative cell wall structure of Microbulbifer marinus strain CGMCC 1.10657 typically features a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in aquatic environments. The aerobic nature of this bacterium implies that it relies on oxygen for its metabolic processes, potentially influencing its distribution in oxygen-rich zones of marine habitats.↵↵In summary, the characteristics of Microbulbifer marinus strain CGMCC 1.10657, particularly its Gram-negative status, rod shape, and aerobic metabolism, suggest its adaptation to specific ecological niches within marine ecosystems. Further studies could elucidate its role in nutrient cycling and its interactions with other microorganisms in these environments, thereby enhancing our understanding of microbial dynamics in marine ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer marinus Gram-negative rod non-motile aerobic 29 mesophilic 658218 FNQO00000000.1 Bac0011821 Thiothrix caldifontis strain DSM 21228 "Thiothrix caldifontis strain DSM 21228 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This strain exhibits the typical morphological characteristics associated with the genus Thiothrix, which is known for its filamentous growth in various aquatic environments. ↵↵As a member of the Thiothrix genus, this strain is likely involved in sulfur oxidation processes, which are fundamental to biogeochemical cycles in its natural habitats. Its aerobic nature suggests a reliance on oxygen for metabolic processes, potentially positioning it in environments where oxygen is readily available, such as surface waters or oxygenated sediments. ↵↵The optimal growth temperature of 25.0°C indicates that Thiothrix caldifontis strain DSM 21228 may be well-suited to temperate environments or regions with moderate thermal conditions. Understanding the physiological traits of this strain contributes to a broader comprehension of microbial diversity in sulfur-rich ecosystems. The ecological role of this bacterium in sulfur cycling could provide insights into nutrient dynamics and the maintenance of ecosystem health in aquatic systems, highlighting the importance of microbial communities in biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Thiothrix Thiothrix caldifontis Gram-negative rod non-motile aerobic 25 mesophilic 525918 FNQP00000000.1 Bac0011822 Lonsdalea quercina strain ATCC 29281 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Lonsdalea Lonsdalea quercina aerobic 71657 FNQS00000000.1 Bac0011823 Actinomyces nasicola strain KPR-1 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Bowdeniella Bowdeniella nasicola 208480 FNQV00000000.1 Bac0011824 Arachidicoccus rhizosphaerae strain Vu-144 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Arachidicoccus Arachidicoccus rhizosphaerae 551991 FNQY00000000.1 Bac0011825 Pedobacter hartonius strain DSM 19033 "Pedobacter hartonius strain DSM 19033 is a Gram-negative, non-spore-forming bacterium characterized by its rod-shaped morphology and optimal growth temperature of 16.0°C. This strain is part of the genus Pedobacter, which is known for its psychrotolerant properties, enabling it to thrive in cooler environments. ↵↵The Gram-negative nature of P. hartonius indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. The non-spore-forming trait suggests that this bacterium relies on vegetative reproduction for survival, indicating potential sensitivity to environmental stresses that could otherwise be mitigated by sporulation in other genera.↵↵Given that P. hartonius is optimized for growth at lower temperatures, it may play a role in the microbial dynamics of cold habitats, such as soils and freshwater environments in temperate and polar regions. Its metabolic capabilities could contribute to nutrient cycling in these ecosystems, particularly in the breakdown of organic matter at cooler temperatures. This ecological role highlights the importance of studying psychrotolerant microorganisms like P. hartonius, as they are crucial for maintaining ecosystem functions in cold climates." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter hartonius Gram-negative rod 16 psychrotolerant non-spore-forming 425514 FNRA00000000.1 Bac0011826 Flavobacterium gillisiae strain DSM 22376 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium gillisiae 150146 FNRD00000000.1 Bac0011827 Prevotella sp. tc2-28 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. tc2-28 1761888 FNRE00000000.1 Bac0011828 Prevotella ruminicola strain D31d "Prevotella ruminicola strain D31d is a Gram-negative, rod-shaped bacterium that is nonsporulating and classified as an anaerobe, indicating its growth is optimized in environments devoid of oxygen. This microbe is predominantly host-associated, suggesting a symbiotic relationship with its host organisms, likely contributing to complex microbial communities within the digestive tracts of ruminant animals, such as cattle and sheep.↵↵The anaerobic nature of Prevotella ruminicola strain D31d plays a crucial role in the fermentation processes occurring in the rumen, where it may assist in the breakdown of fibrous plant materials. This breakdown is essential for the efficient digestion and nutrient absorption in ruminants, highlighting the bacterium's potential importance in the overall health and productivity of its host.↵↵Furthermore, the characteristics of this strain suggest it may engage in synergistic interactions with other microbial species present in the rumen, contributing to a balanced microbial ecosystem that supports metabolic processes essential for the host's nutrition. Understanding the specific roles and interactions of Prevotella ruminicola strain D31d within these microbial communities could provide insights into improving ruminant diet and health through targeted microbiome management strategies." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Xylanibacter Xylanibacter ruminicola Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 839 FNRF00000000.1 Bac0011829 Alistipes timonensis JC136 strain DSM 25383 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes timonensis anaerobic 1465754 FNRI00000000.1 Bac0011830 Marinobacterium georgiense DSM 11526 "Marinobacterium georgiense DSM 11526 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. This species has an optimal growth temperature of 37.0°C, suggesting a preference for mesophilic environments that are typically encountered in moderate thermal habitats.↵↵The Gram-negative cell wall structure of Marinobacterium georgiense indicates the presence of an outer membrane, which can contribute to its adaptability and survival in diverse ecological niches. Its rod shape may facilitate motility and nutrient uptake, enhancing its ability to colonize various environments. The facultative nature of its oxygen requirement implies that it can switch between aerobic respiration and fermentation, depending on the availability of oxygen, which may confer a competitive advantage in fluctuating conditions.↵↵Further ecological insights into Marinobacterium georgiense may include its potential role in biogeochemical cycling, particularly in nutrient-rich environments where organic matter decomposition occurs. The ability to thrive in both aerobic and anaerobic conditions suggests that this microbe could play a significant role in the degradation of organic compounds in sediments or other environments subjected to varying oxygen levels. This adaptability not only highlights the ecological versatility of Marinobacterium georgiense but also underscores the importance of studying such microbes in the context of environmental microbiology and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinobacterium Marinobacterium iners Gram-negative rod motile facultative aerobe/anaerobe 37 mesophilic 48076 FNRJ00000000.1 Bac0011831 Eubacterium aggregans strain SR12 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium aggregans anaerobic 81409 FNRK00000000.1 Bac0011832 Alkalimonas amylolytica strain CGMCC 1.3430 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadales_Incertae_Sedis Alkalimonas Alkalimonas amylolytica 152573 FNRM00000000.1 Bac0011833 Variovorax sp. YR216 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. YR216 1882828 FNRO00000000.1 Bac0011834 Bacteroides xylanisolvens strain NLAE-zl-G339 "Bacteroides xylanisolvens strain NLAE-zl-G339 is a Gram-negative, anaerobic bacterium known for its ability to ferment xylan, a hemicellulosic polysaccharide found in plant cell walls. This strain thrives in anaerobic environments, highlighting its adaptation to ecological niches such as the human gut, where oxygen levels are low. As a member of the Bacteroides genus, this strain is likely involved in the breakdown of complex carbohydrates, contributing to the fermentation processes within the intestinal microbiome.↵↵The anaerobic nature of Bacteroides xylanisolvens strain NLAE-zl-G339 suggests its metabolic pathways are optimized for environments devoid of oxygen, which may influence its interactions with other gut microorganisms and its role in the degradation of dietary fibers. Furthermore, the ability to utilize xylan could play a significant role in enhancing the overall efficiency of nutrient absorption and energy extraction from plant-based diets in host organisms.↵↵Understanding the specific metabolic capabilities of Bacteroides xylanisolvens strain NLAE-zl-G339 may provide insights into its contributions to gut health and its potential influence on the fermentation of dietary fibers. This could facilitate further studies aimed at exploring the relationships between dietary habits, gut microbiota composition, and overall health outcomes, particularly in relation to fiber-rich diets." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 FNRP00000000.1 Bac0011835 Paenibacillus sp. 276b Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 276b 1566277 FNRR00000000.1 Bac0011836 Nocardioides exalbidus strain DSM 22017 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides exalbidus 402596 FNRT00000000.1 Bac0011837 Corynebacterium coyleae strain DSM 44184 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium coyleae 53374 FNRU00000000.1 Bac0011838 Pseudomonas anguilliseptica strain DSM 12111 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas anguilliseptica aerobic 53406 FNSC00000000.1 Bac0011839 Rhodobacter sp. 24-YEA-8 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter sp. 24-YEA-8 1884310 FNSK00000000.1 Bac0011840 Arthrobacter woluwensis strain DSM 10495 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter woluwensis 29 mesophilic soil 156980 FNSN00000000.1 Bac0011841 Amycolatopsis tolypomycina strain DSM 44544 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis tolypomycina 29 mesophilic non-spore-forming 208445 FNSO00000000.1 Bac0011842 Pseudomonas panacis strain BS2778 "Pseudomonas panacis strain BS2778 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and non-spore-forming nature. This strain exhibits optimal growth at a temperature of 16.0 °C, suggesting a preference for cooler environments compared to many other members of the Pseudomonas genus, which typically thrive at higher temperatures. The strict aerobic requirement indicates that P. panacis strain BS2778 relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions within its environment.↵↵The attributes of Pseudomonas panacis strain BS2778 may offer insights into its potential roles in various ecological contexts, particularly in cooler, oxygen-rich habitats. Its non-spore-forming trait suggests that it may be less resilient to extreme environmental conditions compared to spore-forming bacteria, which could limit its survival in fluctuating environments. However, the strain's capacity to thrive at lower temperatures may enable it to exploit specific ecological niches, such as cold soil or aquatic systems, where competition from thermophilic bacteria is reduced. Understanding the specific environmental conditions that support the growth of P. panacis strain BS2778 could provide valuable information for its application in bioremediation or other microbiological processes in cooler climates." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marginalis Gram-negative rod aerobic 16 psychrotolerant non-spore-forming 298 FNSP00000000.1 Bac0011843 Microbacterium hydrocarbonoxydans strain DSM 16089 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium hydrocarbonoxydans 273678 FNSQ00000000.1 Bac0011844 Pseudomonas marginalis strain BS2952 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marginalis 298 FNSU00000000.1 Bac0011845 Rhizobiales bacterium GAS191 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium GAS191 1882830 FNSX00000000.1 Bac0011846 Pseudomonas frederiksbergensis strain BS3655 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 FNTF00000000.1 Bac0011847 Bradyrhizobium erythrophlei strain MT12 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium erythrophlei 1437360 FNTH00000000.1 Bac0011848 Bradyrhizobium lablabi strain GAS522 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium lablabi 722472 FNTI00000000.1 Bac0011849 Streptomyces sp. Ag109_O5-10 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ag109_O5-10 1855349 FNTQ00000000.1 Bac0011850 Pseudomonas kilonensis strain BS3780 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas kilonensis 132476 FNTT00000000.1 Bac0011851 Arthrobacter alpinus strain DSM 22274 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter alpinus 656366 FNTV00000000.1 Bac0011852 Pseudomonas palleroniana strain BS3265 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas palleroniana 191390 FNUA00000000.1 Bac0011853 Pseudomonas deceptionensis strain LMG 25555 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas deceptionensis 882211 FNUD00000000.1 Bac0011854 Amycolatopsis pretoriensis strain DSM 44654 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis pretoriensis 218821 FNUJ00000000.1 Bac0011855 Caloramator fervidus strain DSM 5463 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Caloramator Caloramator fervidus anaerobic 29344 FNUK00000000.1 Bac0011856 Oleiphilus messinensis strain DSM 13489 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oleiphilaceae Oleiphilus Oleiphilus messinensis 141451 FNUP00000000.1 Bac0011857 Butyrivibrio sp. Su6 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. Su6 1520810 FNUR00000000.1 Bac0011858 Chryseobacterium humi strain DSM 21580 "Chryseobacterium humi strain DSM 21580 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and thrives optimally at a temperature of 29.0°C. This strain is part of the Chryseobacterium genus, which is known for its diverse environmental distribution and potential roles in various ecological niches. The Gram-negative nature of C. humi indicates a complex cell wall structure, which may influence its interactions with the surrounding environment and other microorganisms.↵↵The optimal growth temperature of 29.0°C suggests that C. humi is adapted to mesophilic conditions, potentially allowing it to flourish in temperate habitats. Its aerobic requirement indicates that this organism relies on oxygen for energy production, positioning it within environments where oxygen is readily available, such as soil or water. ↵↵Further examination of C. humi’s metabolic capabilities could reveal its role in nutrient cycling or its interactions within microbial communities. Given its adaptation to aerobic conditions and optimal growth temperature, this strain may contribute to the decomposition of organic matter in its natural habitats, facilitating nutrient availability for other organisms. As such, C. humi could be an important player in the maintenance of soil health and ecosystem functioning, highlighting its ecological significance within microbial consortia." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Halpernia Halpernia humi Gram-negative rod non-motile aerobic 29 mesophilic 493375 FNUS00000000.1 Bac0011859 Eubacterium ruminantium strain FB3002 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ruminantium 42322 FNUU00000000.1 Bac0011860 Prevotella ruminicola strain AR32 "Prevotella ruminicola strain AR32 is a Gram-negative, non-sporulating rod-shaped bacterium that is host-associated and obligately anaerobic. This microbe is part of the diverse microbiota found in the gastrointestinal tract of ruminants, where it plays a significant role in the fermentation of carbohydrates and the breakdown of complex organic materials. Its anaerobic nature suggests that Prevotella ruminicola strain AR32 thrives in low-oxygen environments, which are characteristic of the rumen, facilitating the digestion of fibrous plant materials by producing short-chain fatty acids and other fermentation byproducts essential for the host's energy metabolism.↵↵The non-sporulating characteristic indicates that this strain likely relies on stable ecological niches within the host to maintain its population, as it does not possess the ability to form spores for survival in harsh conditions. This dependency on a specific habitat underscores the intricate relationship between ruminants and their gut microbiota, where such microorganisms contribute not only to digestion but also to the overall health of the host.↵↵Furthermore, the presence of Prevotella ruminicola strain AR32 in the ruminant gut microbiome highlights the importance of anaerobic bacteria in nutrient cycling and energy flow within these ecosystems, illustrating the complex interdependencies that exist between microorganisms and their hosts in agricultural settings." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Xylanibacter Xylanibacter ruminicola Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 839 FNUV00000000.1 Bac0011861 Thalassococcus halodurans strain DSM 26915 "Thalassococcus halodurans strain DSM 26915 is a Gram-negative, ovoid-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 32.0°C. This strain belongs to a group of microorganisms that are adapted to saline environments, demonstrating a resilience to high salt concentrations, which is a characteristic trait of its genus.↵↵The Gram-negative nature of T. halodurans indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that is crucial for its survival in various environmental conditions. The ovoid morphology suggests a potential for specific modes of motility or cellular interactions, which may influence its ecological role in marine ecosystems.↵↵The aerobic requirement of T. halodurans implies that it relies on oxygen for its metabolic processes, which may limit its habitat to well-oxygenated environments, such as surface waters or oxygen-rich sediments. This trait highlights the importance of oxygen availability in shaping the distribution and activity of this microorganism.↵↵Furthermore, the optimal growth temperature of 32.0°C indicates a preference for mesophilic conditions, aligning with the thermal profiles of many coastal marine habitats. This adaptability to both temperature and salinity suggests that T. halodurans may play a significant role in nutrient cycling and the degradation of organic matter in marine environments, potentially contributing to the overall health and stability of these ecosystems. Understanding the specific ecological functions of T. halodurans may provide insights into microbial diversity and resilience in saline marine habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Thalassococcus Thalassococcus halodurans Gram-negative ovoid non-motile aerobic 32 mesophilic 373675 FNUZ00000000.1 Bac0011862 Bryocella elongata strain DSM 22489 "Bryocella elongata strain DSM 22489 is a Gram-negative, rod-shaped bacterium classified as an organotrophic and chemotrophic aerobic microorganism. This strain thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments, which may be reflective of its ecological niche. As an aerobic organism, B. elongata requires oxygen for its metabolic processes, utilizing organic compounds as its primary energy source.↵↵The specific metabolic capabilities of B. elongata suggest that it plays a role in the degradation of organic matter in its natural habitat. This could imply that the strain contributes to nutrient cycling in ecosystems where it is found, potentially aiding in the breakdown of complex organic materials. Understanding the metabolic pathways and ecological roles of such organisms can provide insights into their contributions to microbial communities, especially in colder environments where the temperature is often below that optimal for many other microbial species. ↵↵Further exploration of B. elongata's ecological interactions may reveal its significance in biogeochemical processes, particularly in aquatic or soil ecosystems that experience lower temperatures." Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Bryocella Bryocella elongata Gram-negative rod non-motile aerobic 16 organotroph; chemotroph psychrotolerant 863522 FNVA00000000.1 Bac0011863 Halomonas daqingensis strain CGMCC 1.6443 "Halomonas daqingensis strain CGMCC 1.6443 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives at an optimal temperature of 29.0°C, suggesting a preference for moderate thermal conditions typical of certain saline environments. The non-spore-forming characteristic indicates that H. daqingensis may rely on other survival strategies in response to environmental stressors, which is consistent with the adaptive traits observed in halophilic microorganisms.↵↵As a member of the Halomonas genus, H. daqingensis is likely to inhabit hypersaline environments, where it plays a role in the biogeochemical cycling of nutrients. Its aerobic nature allows it to utilize oxygen for energy production, which may confer advantages in oxygen-rich niches within saline habitats. The ability to thrive in such conditions could also imply potential applications in biotechnology, particularly in bioremediation or bioengineering, where the unique metabolic pathways of halophilic bacteria are harnessed for industrial processes. Understanding the physiological characteristics and environmental adaptations of Halomonas daqingensis strain CGMCC 1.6443 may offer insights into the ecological roles of microbial communities in extreme saline environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia desiderata Gram-negative rod aerobic 29 mesophilic non-spore-forming 52021 FNVC00000000.1 Bac0011864 Jhaorihella thermophila strain DSM 23413 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Jhaorihella Jhaorihella thermophila aerobic 488547 FNVD00000000.1 Bac0011865 Paenibacillus sp. UNC499MF Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. UNC499MF 1502751 FNVF00000000.1 Bac0011866 Nitrosospira multiformis ATCC 25196 strain Nl13 "Nitrosospira multiformis ATCC 25196 strain Nl13 is a Gram-negative, aerobic bacterium that functions as a lithotrophic autotroph, utilizing inorganic compounds as its energy source. This strain is part of the larger Nitrosospira genus, which is known for its role in nitrification processes within terrestrial environments. ↵↵As an autotroph, N. multiformis Nl13 is capable of converting carbon dioxide into organic compounds, relying on inorganic nitrogen compounds, specifically ammonia, as an electron donor for energy production. This ecological niche positions the strain as a critical player in the nitrogen cycle, particularly in soil ecosystems where it contributes to the oxidation of ammonia to nitrite, a key step in the nitrification process. ↵↵The aerobe nature of this strain indicates that it thrives in environments rich in oxygen, further underscoring its adaptation to terrestrial habitats where oxygen availability can vary. Overall, Nitrosospira multiformis ATCC 25196 strain Nl13 exemplifies the intricate relationships that exist within soil microbiomes, highlighting its potential influence on soil fertility and plant growth through its involvement in nitrogen transformations." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis Negative Yes 1 2 Aerobe Lithotroph - Autotroph Mesophilic Terrestrial Free living 1231 FNVK00000000.1 Bac0011867 Halobellus limi strain CGMCC 1.10331 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus limi 699433 FNVN00000000.1 Bac0011868 Actinomadura echinospora strain DSM 43163 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Thermomonospora Thermomonospora echinospora 1992 FNVO00000000.1 Bac0011869 Algoriphagus boritolerans DSM 17298 = JCM 18970 "Algoriphagus boritolerans DSM 17298 = JCM 18970 is a Gram-negative rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This organism belongs to the genus Algoriphagus, which is characterized by its adaptation to cold environments. The rod shape of A. boritolerans is typical of many members within this genus, suggesting a possible genetic or structural adaptation that facilitates its survival in specific ecological niches.↵↵The Gram-negative nature of A. boritolerans indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which can influence its interactions with surrounding environments and other microorganisms. This structural feature may also confer certain advantages in terms of resistance to environmental stressors, including varying temperatures and osmotic pressures.↵↵While detailed ecological roles remain to be fully elucidated, the optimal growth temperature of A. boritolerans suggests it may be prevalent in temperate marine environments or other ecosystems that experience cooler temperatures. The adaptation of this bacterium to such conditions may contribute to nutrient cycling and interactions within microbial communities in its native habitat. Understanding the physiological traits and environmental preferences of Algoriphagus boritolerans may provide insights into the resilience and functional roles of microbial life in cold oceanic ecosystems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus boritolerans Gram-negative rod non-motile 29 mesophilic 1120964 FNVR00000000.1 Bac0011870 Parabacteroides chinchillae strain DSM 29073 "Parabacteroides chinchillae strain DSM 29073 is a Gram-negative, non-spore-forming rod that thrives under anaerobic conditions, with an optimal growth temperature of 37.0 °C. As a member of the Parabacteroides genus, this strain exhibits distinctive morphological and physiological characteristics consistent with its classification within the Bacteroidetes phylum.↵↵The rod-shaped morphology of P. chinchillae suggests a potential for diverse interactions within anaerobic environments, particularly in the gastrointestinal tracts of host organisms. The inability to form spores indicates that this strain relies on stable environmental conditions for survival and proliferation, which is typical for many anaerobic bacteria. Given its optimal growth temperature aligning with that of mammalian body temperatures, P. chinchillae may play a specialized role in the microbiota of warm-blooded hosts.↵↵While the ecological role of P. chinchillae within its native habitat remains to be fully elucidated, its adaptation to anaerobic environments suggests a capacity for engaging in complex metabolic processes that could influence host health and microbial community dynamics. Understanding the specific interactions and contributions of P. chinchillae within its ecosystem may provide insights into the broader functions of anaerobic bacteria within gut microbiomes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides chinchillae Gram-negative rod non-motile anaerobic 37 mesophilic non-spore-forming 871327 FNVS00000000.1 Bac0011871 Nonomuraea solani strain CGMCC 4.7037 "Nonomuraea solani strain CGMCC 4.7037 is a Gram-positive, spore-forming bacterium that thrives optimally at a temperature of 29.0 °C and requires oxygen for growth, categorizing it as an aerobic organism. This strain is part of the actinobacterial group, which is known for its diverse metabolic capabilities and significance in soil ecosystems.↵↵The Gram-positive nature of Nonomuraea solani suggests a thick peptidoglycan layer in its cell wall, which may play a role in its resilience to environmental stresses. The ability to form spores indicates a survival strategy that allows this microbe to endure unfavorable conditions, ensuring its persistence in various habitats. ↵↵As an aerobic organism, Nonomuraea solani relies on oxygen for energy production, which may influence its distribution and ecological roles, particularly in well-aerated environments. The optimal growth temperature of 29.0 °C suggests a preference for warm environments, which could correlate with its potential habitats such as soil or decaying organic matter where temperatures are typically elevated.↵↵Overall, the traits of Nonomuraea solani strain CGMCC 4.7037 underscore its potential role in nutrient cycling and organic matter decomposition, contributing to soil health and microbial diversity. Its sporulating capability may also indicate an adaptation to fluctuating environmental conditions, highlighting its importance in maintaining ecological balance within its native habitat." Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea solani Gram-positive non-motile aerobic 29 mesophilic spore-forming 1144553 FNVT00000000.1 Bac0011872 Rhizobium sp. NFR12 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. NFR12 1566261 FNWM00000000.1 Bac0011873 Phaeospirillum fulvum strain DSM 13234 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum fulvum anaerobic 1082 FNWO00000000.1 Bac0011874 Chryseobacterium culicis strain DSM 23031 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium culicis 680127 FNWQ00000000.1 Bac0011875 Tardiphaga sp. OK245 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Tardiphaga Tardiphaga sp. OK245 1855306 FNWZ00000000.1 Bac0011876 Rheinheimera pacifica strain DSM 17616 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera pacifica aerobic 173990 FNXF00000000.1 Bac0011877 Paracoccus alkenifer strain DSM 11593 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus alkenifer 65735 FNXG00000000.1 Bac0011878 Flavobacterium terrigena strain DSM 17934 "Flavobacterium terrigena strain DSM 17934 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. This strain is characterized by its distinct morphological and physiological traits which align it with the broader Flavobacterium genus, known for its diverse metabolic capabilities and ecological roles. ↵↵The Gram-negative nature of Flavobacterium terrigena indicates the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions with environmental factors and other microorganisms. The rod shape contributes to its motility and potential colonization capabilities in various habitats. As an aerobic organism, this strain requires oxygen for its growth, suggesting a preference for oxygen-rich environments.↵↵In terms of ecological significance, members of the Flavobacterium genus have been identified in various environments, including soil and aquatic systems, where they play essential roles in organic matter degradation and nutrient cycling. Given its traits, Flavobacterium terrigena strain DSM 17934 may contribute to similar ecological functions, potentially aiding in the decomposition processes within terrestrial ecosystems. This could have implications for soil health and fertility, highlighting the importance of studying such microorganisms in understanding ecosystem dynamics." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium terrigena Gram-negative rod non-motile aerobic 25 mesophilic 402734 FNYA00000000.1 Bac0011879 Paraburkholderia diazotrophica strain LMG 26031 "Paraburkholderia diazotrophica strain LMG 26031 is a Gram-negative, non-spore-forming rod bacterium that thrives under aerobic conditions, with an optimal growth temperature of 32.0°C. This strain, belonging to the Burkholderia genus, exhibits distinct morphological and physiological characteristics typical of aerobic bacteria. Its Gram-negative nature indicates a complex cell wall structure, which may contribute to its adaptability in various environments.↵↵The rod shape of P. diazotrophica suggests a potential role in colonizing specific ecological niches, possibly facilitating interactions with other microorganisms or plant roots. The absence of sporulation implies that this strain relies on other survival strategies under adverse conditions rather than forming spores, which could influence its ecological interactions and resilience.↵↵Insights into the ecological role of P. diazotrophica may highlight its potential contributions to nitrogen cycling within its habitat, as members of the Burkholderia genus are often associated with nitrogen-fixing capabilities. This functional trait could play a significant role in enhancing soil fertility and supporting plant growth, particularly in environments where nitrogen availability is a limiting factor. Further studies on this strain could elucidate its specific interactions within microbial communities and its overall impact on ecosystem dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia diazotrophica Gram-negative rod aerobic 32 mesophilic non-spore-forming 667676 FNYE00000000.1 Bac0011880 Azotobacter beijerinckii strain DSM 1041 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter beijerinckii 170623 FNYO00000000.1 Bac0011881 Xiangella phaseoli strain CGMCC 4.7038 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora phaseoli 1144548 FNYV00000000.1 Bac0011882 Pseudomonas linyingensis strain LMG 25967 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas linyingensis 915471 FNZE00000000.1 Bac0011883 Bhargavaea ginsengi strain CGMCC 1.6763 "Bhargavaea ginsengi strain CGMCC 1.6763 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. The absence of sporulation indicates that this microbe may rely on other survival strategies under adverse conditions rather than forming spores, which are commonly associated with the ability to withstand extreme stressors.↵↵As a member of the Bhargavaea genus, B. ginsengi strain CGMCC 1.6763 may play a role in specific ecological niches, particularly those associated with ginseng plants, given its nomenclature. The aerobic nature of this strain implies that it utilizes oxygen for its metabolic processes, potentially influencing the microbial community dynamics in its habitat. This characteristic could be significant in the context of soil microbiomes where oxygen levels fluctuate and can affect the overall microbial diversity and activity.↵↵The unique combination of traits exhibited by Bhargavaea ginsengi strain CGMCC 1.6763 positions it as a potential organism of interest for further studies focused on its interactions with plant systems, particularly in the context of promoting plant health or influencing soil nutrient cycling." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Bhargavaea Bhargavaea ginsengi Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 426757 FNZF00000000.1 Bac0011884 Variovorax sp. OK202 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. OK202 1884311 FNZJ00000000.1 Bac0011885 Maribacter orientalis strain DSM 16471 "Maribacter orientalis strain DSM 16471 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolic characteristics and has an optimal growth temperature of 16.0°C. This strain, which belongs to the genus Maribacter, is part of the diverse microbial community found in marine environments. ↵↵As a Gram-negative organism, M. orientalis possesses a thin peptidoglycan layer and an outer membrane, characteristics that are typical of this group of bacteria and may influence its interactions within its ecological niche. The rod shape suggests a structural adaptability that may facilitate motility and nutrient acquisition in its aquatic habitat. The non-spore-forming nature of this strain indicates that it relies on other means of survival and reproduction, which could include rapid growth and division under optimal conditions.↵↵The preference for an optimal temperature of 16.0°C highlights its adaptation to cooler marine environments, potentially making it a key player in the microbial dynamics of such habitats. As an aerobic organism, M. orientalis likely participates in the degradation of organic matter and plays a role in nutrient cycling, contributing to the overall health of marine ecosystems. This adaptation to specific environmental conditions underscores the ecological importance of Maribacter species in maintaining the balance of microbial communities in cold marine waters." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter orientalis Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 228957 FNZN00000000.1 Bac0011886 Parapedobacter koreensis strain Jip14 "Parapedobacter koreensis strain Jip14 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain is optimally active at a temperature of 37.0°C, suggesting its adaptation to moderate thermal environments, which may be reflective of its natural habitat. ↵↵The Gram-negative nature of Parapedobacter koreensis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this bacterial group. This structural feature may confer various advantages, including resistance to certain antibiotics and the ability to thrive in diverse environments. The non-spore-forming characteristic implies that this strain relies on vegetative growth and may be sensitive to environmental stresses that typically trigger sporulation in other bacterial species.↵↵Given its aerobic requirement, Parapedobacter koreensis likely engages in oxidative metabolism, utilizing oxygen as a terminal electron acceptor. This trait suggests that the organism may inhabit environments rich in oxygen, possibly contributing to nutrient cycling in such ecosystems. ↵↵Understanding the physiological traits of Parapedobacter koreensis strain Jip14 provides a foundation for exploring its potential roles in microbial communities, particularly in environments where aerobic conditions prevail. Further studies could elucidate its interactions with other microorganisms and its contributions to biogeochemical processes." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Parapedobacter Parapedobacter koreensis Gram-negative rod non-motile aerobic 37 mesophilic non-spore-forming 332977 FNZR00000000.1 Bac0011887 Alkalibacterium pelagium strain DSM 19183 "Alkalibacterium pelagium strain DSM 19183 is a Gram-positive, rod-shaped bacterium that exhibits optimal growth at a temperature of 37.0°C. This strain is notable for its non-spore-forming nature, which suggests that it may rely on other mechanisms for survival in its environment. ↵↵As a member of the genus Alkalibacterium, this organism is likely adapted to alkaline conditions, which could influence its metabolic pathways and ecological interactions. The optimal temperature indicates that it may thrive in environments that are close to human body temperature, potentially suggesting a niche in warmer habitats. ↵↵Understanding the specific metabolic capabilities and environmental tolerances of Alkalibacterium pelagium strain DSM 19183 could provide insights into its role in biogeochemical cycles, particularly in alkaline ecosystems. The absence of sporulation may also indicate that this strain has alternative survival strategies that could be of interest for applications in biotechnology, particularly in processes requiring stable, active microbial populations under controlled conditions." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alkalibacterium Alkalibacterium pelagium Gram-positive rod 37 mesophilic non-spore-forming 426702 FNZU00000000.1 Bac0011888 Pseudobutyrivibrio ruminis strain ACV-9 "Pseudobutyrivibrio ruminis strain ACV-9 is a Gram-positive, non-sporulating, anaerobic bacterium that thrives in the intestinal microflora of animals. This strain is a chemoheterotroph, utilizing organic compounds as its energy source, which is characteristic of many gut-associated microbes that contribute to the fermentation processes in the gastrointestinal tract. ↵↵Optimal growth for P. ruminis strain ACV-9 occurs at 39.0°C, reflecting its adaptation to the warm environment typically found within the intestinal systems of host animals. The anaerobic nature of this strain indicates its reliance on environments devoid of oxygen, which is essential for its metabolic processes. ↵↵The presence of Pseudobutyrivibrio ruminis strain ACV-9 in the gut microbiome may play a crucial role in the breakdown of complex carbohydrates, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are important for the health and energy metabolism of the host. Understanding the specific functions and interactions of this strain within the gut ecosystem could provide insights into its potential contributions to host nutrition and overall gut health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio ruminis Positive Yes 1 Anaerobe 39 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 46206 FNZX00000000.1 Bac0011889 Aquimarina amphilecti strain DSM 25232 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aquimarina Aquimarina amphilecti 1038014 FOAB00000000.1 Bac0011890 Pseudomonas sp. NFACC41-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC41-3 1566194 FOAE00000000.1 Bac0011891 Pseudosphingobacterium domesticum strain DSM 18733 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Olivibacter Olivibacter domesticus 407022 FOAF00000000.1 Bac0011892 Paraburkholderia caballeronis strain LMG 26416 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caballeronis plants; soil; water 416943 FOAJ00000000.1 Bac0011893 Bacteroides thetaiotaomicron strain KPPR-3 "Bacteroides thetaiotaomicron strain KPPR-3 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, exhibiting strict anaerobic metabolism. This strain is a member of a genus known for its significant role in the human gut microbiota, where it contributes to the degradation of complex polysaccharides and the fermentation of dietary fibers. ↵↵As an anaerobe, B. thetaiotaomicron KPPR-3 can flourish in oxygen-depleted niches, such as the intestinal tract, where it interacts closely with the host's immune system and other microbial inhabitants. This interaction is crucial for maintaining gut health, as it can influence the metabolic processes of the host and the overall composition of the gut microbiome.↵↵Understanding the specific traits of B. thetaiotaomicron strain KPPR-3 provides insight into its potential functional roles within the gut ecosystem, particularly in carbohydrate metabolism and host-microbe interactions. The capacity of this strain to thrive in anaerobic conditions suggests that it may play a pivotal role in nutrient cycling and energy harvest in a complex microbial community, highlighting its importance in maintaining the homeostasis of the gut environment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 818 FOAL00000000.1 Bac0011894 Bosea lupini strain LMG 26383 "Bosea lupini strain LMG 26383 is a Gram-negative, aerobic, rod-shaped bacterium. This strain exhibits characteristics typical of the Bosea genus, which is known for its adaptation to specific environmental niches. The Gram-negative nature of Bosea lupini strain LMG 26383 suggests a complex cell wall structure, which includes an outer membrane that may contribute to its resilience in various conditions. ↵↵As an aerobic organism, this strain requires oxygen for growth, which positions it within environments rich in oxygen, such as soil or water. The rod shape may provide advantages in motility and surface adherence, facilitating colonization in its habitat. While specific ecological roles or interactions of this strain with other microorganisms or plants are not detailed in the available data, the presence of such traits indicates potential involvement in nutrient cycling or symbiotic relationships, particularly in environments where legumes are present, given the association with the genus name ""lupini,"" which is derived from the lupin plant. ↵↵Understanding the characteristics of Bosea lupini strain LMG 26383 can enhance our knowledge of microbial diversity and functionality in aerobic ecosystems, highlighting the importance of studying such organisms for insights into microbial ecology and potential applications in agriculture or biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea lupini Gram-negative rod aerobic 1036779 FOAN00000000.1 Bac0011895 Pseudomonas hussainii strain JCM 19513 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Atopomonas Atopomonas hussainii 1429083 FOAS00000000.1 Bac0011896 Ruminococcus albus strain KH2T6 "Ruminococcus albus strain KH2T6 is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, specifically within host-associated habitats. This strain is part of the Ruminococcus genus, which is known for its role in the degradation of complex carbohydrates in the gastrointestinal tracts of ruminant animals. The coccoid shape of R. albus strain KH2T6 suggests a distinctive cellular organization that may contribute to its functional capabilities in fermentative processes.↵↵As an anaerobe, R. albus strain KH2T6 is adapted to environments where oxygen is limited or absent, which is characteristic of the digestive systems of its hosts. This adaptation likely facilitates its involvement in symbiotic relationships with the host, aiding in the breakdown of fibrous plant material. The metabolic processes of this strain may enhance nutrient availability for the host, illustrating a mutualistic interaction foundational to the health of ruminant species.↵↵Understanding the specific traits and metabolic capabilities of Ruminococcus albus strain KH2T6 could provide insights into its potential applications in improving livestock health and productivity, as well as its role in the broader context of gut microbiota dynamics. Further research may elucidate the specific contributions of this strain to the overall efficiency of nutrient utilization in its ecological niche." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Hominimerdicola Hominimerdicola alba Positive Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1264 FOAT00000000.1 Bac0011897 Rhodococcus maanshanensis strain DSM 44675 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus maanshanensis 183556 FOAW00000000.1 Bac0011898 Pseudoxanthomonas sp. GM95 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas sp. GM95 1881043 FOAX00000000.1 Bac0011899 Nonomuraea pusilla strain DSM 43357 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea pusilla 46177 FOBF00000000.1 Bac0011900 Colwellia chukchiensis strain CGMCC 1.9127 "Colwellia chukchiensis strain CGMCC 1.9127 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism, thriving optimally at a temperature of 25.0°C. This strain belongs to a genus known for its adaptability to different oxygen conditions, reflecting a versatile metabolic capacity that may allow it to occupy diverse ecological niches.↵↵The Gram-negative nature of C. chukchiensis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. This structural characteristic may play a role in its interaction with the environment and influence its resilience to various stressors.↵↵Given its optimal growth temperature of 25.0°C, C. chukchiensis is likely adapted to moderate thermal environments, which could include marine or coastal habitats. The ability to function as a facultative aerobe/anaerobe suggests that this strain can utilize both aerobic respiration and fermentation pathways, providing metabolic flexibility that could be advantageous in fluctuating environmental conditions, such as varying oxygen levels in sediment or water columns.↵↵Overall, the traits of Colwellia chukchiensis strain CGMCC 1.9127 highlight its potential role in biogeochemical cycles, particularly in environments where oxygen availability can change, thereby contributing to the microbial diversity and metabolic processes in its respective ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia chukchiensis Gram-negative rod facultative aerobe/anaerobe 25 mesophilic 641665 FOBI00000000.1 Bac0011901 Variovorax sp. YR750 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. YR750 1884384 FOBJ00000000.1 Bac0011902 Acinetobacter sp. DSM 11652 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. DSM 11652 346222 FOBK00000000.1 Bac0011903 Roseovarius tolerans strain DSM 11457 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius tolerans 74031 FOBO00000000.1 Bac0011904 bacterium A37T11 bacterium A37T11 1855384 FOBR00000000.1 Bac0011905 Chryseobacterium taichungense strain DSM 17453 "Chryseobacterium taichungense strain DSM 17453 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This organism exhibits optimal growth at a temperature of 25°C, suggesting a preference for moderate environmental conditions typically found in diverse ecological niches. ↵↵As a member of the Chryseobacterium genus, it is important to note that members of this group are often associated with various environments, including soil and aquatic systems, where they may play a role in organic matter degradation and nutrient cycling. The aerobic requirement of Chryseobacterium taichungense indicates its dependence on oxygen for growth, which further aligns with its potential ecological roles in oxygen-rich environments.↵↵The physiological characteristics of this strain, particularly its Gram-negative cell wall structure, suggest it may possess various outer membrane proteins that could contribute to its interactions within microbial communities. Understanding the metabolic capabilities of Chryseobacterium taichungense may provide insights into its ecological contributions, particularly in biogeochemical processes in its native habitats. Further research could illuminate its role in the degradation of complex organic compounds, highlighting the significance of this strain in shaping soil and water ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium taichungense Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 295069 FOBV00000000.1 Bac0011906 Bacillus persicus strain B48 "Bacillus persicus strain B48 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities, indicating its ability to withstand unfavorable environmental conditions. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the growth conditions of many mesophilic organisms. As an aerobic microbe, B. persicus strain B48 requires oxygen for its metabolic processes, which suggests it may play a role in environments where aerobic respiration is prevalent.↵↵The ability to form spores is a notable trait, allowing B. persicus strain B48 to survive in harsh conditions such as extreme temperatures, desiccation, and nutrient scarcity. This characteristic is particularly advantageous for its persistence in various ecological niches, where it may contribute to nutrient cycling and soil health. The presence of this strain in specific environments could indicate its potential role in biodegradation processes or in promoting plant growth through beneficial interactions in the rhizosphere.↵↵Overall, the ecological significance of Bacillus persicus strain B48 may extend beyond its metabolic capabilities, potentially influencing microbial community dynamics and soil fertility in its habitat through its aerobic activity and spore-forming resilience." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Mesobacillus Mesobacillus persicus Gram-positive rod non-motile aerobic 37 mesophilic spore-forming 930146 FOBW00000000.1 Bac0011907 Bradyrhizobium sp. OK095 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. OK095 1882760 FOBX00000000.1 Bac0011908 Terribacillus saccharophilus strain DSM 21619 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Terribacillus Terribacillus saccharophilus 361277 FOCD00000000.1 Bac0011909 Sphingomonas sp. S6-262 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas gellani 1166340 FOCF00000000.1 Bac0011910 Maribius pelagius strain DSM 26893 "Maribius pelagius strain DSM 26893 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism, thriving optimally at a temperature of 32.0°C. Characterized by its rod morphology, this strain is a member of the Maribius genus, which is known for its marine origins. ↵↵As a Gram-negative organism, Maribius pelagius strain DSM 26893 possesses a distinctive cell wall structure, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is significant in providing the organism with resilience against certain environmental stresses and may influence its interactions within marine ecosystems.↵↵The aerobic nature of this strain suggests that it relies on oxygen for its metabolic processes, which may include the oxidation of organic compounds. This trait indicates a potential role in nutrient cycling within its marine habitat, where oxygen availability can vary. The optimal growth temperature of 32.0°C suggests that Maribius pelagius strain DSM 26893 is well-suited to warm marine environments, possibly contributing to its ecological niche in coastal waters.↵↵Given its specific temperature preference and aerobic requirements, Maribius pelagius strain DSM 26893 may play a role in the degradation of organic matter in oxygen-rich marine environments, thereby influencing the dynamics of microbial communities and nutrient cycling in these ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Palleronia Palleronia pelagia Gram-negative rod non-motile aerobic 32 mesophilic 387096 FOCM00000000.1 Bac0011911 Nitrosospira multiformis strain Nl18 "Nitrosospira multiformis strain Nl18 is a Gram-negative, aerobic bacterium classified as a lithotrophic autotroph, highlighting its ability to derive energy from inorganic compounds while fixing carbon dioxide for growth. This microbe is found in terrestrial habitats, where it plays a crucial role in the nitrogen cycle, particularly in the oxidation of ammonia to nitrite. ↵↵As an aerobic organism, N. multiformis strain Nl18 requires oxygen for its metabolic processes, which is consistent with its habitat preferences in well-oxygenated soils. Its lithotrophic lifestyle enables it to utilize ammonia as its primary energy source, a trait that is essential for its survival and ecological function in nutrient cycling. ↵↵The presence of this strain in terrestrial ecosystems underscores its potential impact on soil fertility and plant health, as it contributes to the conversion of nitrogen compounds, making them available for uptake by plants. Furthermore, the activity of N. multiformis strain Nl18 may have implications for managing nitrogen availability in agricultural systems, where understanding the interplay between soil microorganisms and nutrient dynamics is vital for sustainable practices. Thus, the study of this strain can provide valuable insights into the microbial contributions to soil health and ecosystem functioning." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis Negative Yes 1 2 Aerobe Lithotroph - Autotroph Mesophilic Terrestrial Free living 1231 FOCT00000000.1 Bac0011912 Pseudomonas sp. ok266 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ok266 1761896 FOCU00000000.1 Bac0011913 Brachymonas denitrificans DSM 15123 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Allobrachymonas Allobrachymonas denitrificans aerobic 28220 FOCW00000000.1 Bac0011914 Megamonas sp. Calf98-2 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas sp. Calf98-2 1855330 FOCY00000000.1 Bac0011915 Halomonas aquamarina strain 558 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella aquamarina 77097 FODB00000000.1 Bac0011916 Duganella sp. CF517 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. CF517 1881038 FODC00000000.1 Bac0011917 Streptomyces rubidus strain CGMCC 4.2026 "Streptomyces rubidus strain CGMCC 4.2026 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives in aerobic conditions. This strain is optimally grown at a temperature of 32.0°C, which suggests a preference for moderate warm environments typical of many soil-dwelling actinomycetes. ↵↵As a member of the genus Streptomyces, this strain is likely to contribute to the complex microbial communities found in terrestrial ecosystems, particularly in soil where it may play a role in the decomposition of organic matter. The ability to form spores allows S. rubidus to survive in fluctuating environmental conditions, potentially leading to an increased resilience in nutrient-poor habitats. Moreover, the aerobic nature of its metabolism indicates that it may participate in processes such as the oxidation of organic compounds, thereby influencing soil biogeochemical cycles.↵↵Understanding the traits of S. rubidus strain CGMCC 4.2026 can provide insights into its potential ecological roles and applications, particularly in biotechnological processes, where actinomycetes are known for their production of bioactive compounds. Further investigation into its metabolic capabilities and interactions within microbial communities could reveal novel functions that contribute to ecosystem health and stability." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila rubida Gram-positive rod non-motile aerobic 32 mesophilic spore-forming 310780 FODD00000000.1 Bac0011918 Paracoccus alcaliphilus strain DSM 8512 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus alcaliphilus 34002 FODE00000000.1 Bac0011919 Peptostreptococcus russellii strain Calf135 "Peptostreptococcus russellii strain Calf135 is a Gram-positive, nonsporulating coccus that typically forms chains and thrives in anaerobic conditions. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which aligns with its habitat as part of the intestinal microflora of animals. The optimal growth temperature for P. russellii strain Calf135 is 37.0°C, a temperature that is consistent with the physiological conditions found within the intestinal tract of warm-blooded hosts.↵↵As a member of the complex ecosystem of gut microbiota, P. russellii strain Calf135 may play a role in the digestion of macromolecules and the maintenance of intestinal health in its animal hosts. The presence of this strain in the intestinal microflora suggests potential interactions with other microbial species, contributing to the overall metabolic activities and the balance of microbial communities in the gut environment. Further studies could elucidate the specific functions and contributions of P. russellii strain Calf135 within the broader context of gut microbiome dynamics." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcus Peptostreptococcus russellii Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Animal Intestinal Microflora Chains Nonsporulating 215200 FODF00000000.1 Bac0011920 Nitrosomonas oligotropha strain Nm76 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas oligotropha 42354 FODO00000000.1 Bac0011921 Rhodospirillales bacterium URHD0017 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillales bacterium URHD0017 1380357 FODP00000000.1 Bac0011922 Acinetobacter pittii strain UNC434CL69Tsu2S25 "Acinetobacter pittii strain UNC434CL69Tsu2S25 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells. This strain is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon, and it thrives in aerobic environments, necessitating the presence of oxygen for its metabolic processes. With an optimal growth temperature of 37.0°C, this organism is well-suited to thrive in a variety of habitats, reflecting its adaptability.↵↵The ability of A. pittii strain UNC434CL69Tsu2S25 to utilize diverse organic substrates as energy sources highlights its potential ecological versatility. This adaptability may allow it to inhabit various niches, including clinical and environmental settings, where it can play a role in nutrient cycling. Moreover, the strain's aerobic nature suggests an involvement in aerobic degradation processes, which can be crucial in environments rich in organic material. Understanding the metabolic capabilities and habitat preferences of this strain could provide insights into its ecological roles and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 FOEA00000000.1 Bac0011923 Methylobacterium sp. ap11 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. ap11 1761799 FOEB00000000.1 Bac0011924 Blastococcus endophyticus strain DSM 45413 "Blastococcus endophyticus strain DSM 45413 is a Gram-positive, non-spore-forming bacterium characterized by its unique physiological and structural traits. As a member of the genus Blastococcus, this strain exhibits a robust cell wall typical of Gram-positive organisms, which is primarily composed of peptidoglycan. The absence of sporulation suggests that this strain relies on alternative survival mechanisms rather than forming spores to withstand adverse environmental conditions.↵↵The non-spore-forming nature of B. endophyticus may indicate a reliance on vegetative growth for survival and reproduction, potentially favoring environments where conditions are relatively stable and conducive to growth. This trait could reflect its adaptation to specific ecological niches where it interacts with its surroundings in a dynamic manner, possibly engaging in symbiotic relationships with host plants or other microorganisms.↵↵Understanding the characteristics of Blastococcus endophyticus strain DSM 45413 can provide insights into its ecological roles, particularly in relation to its interactions within microbial communities. Its Gram-positive nature and non-spore-forming capability may suggest a significant role in nutrient cycling or plant health, highlighting the importance of such microorganisms in maintaining ecosystem balance. Further research could elucidate its specific functions and contributions to its habitat, emphasizing the need to explore the diverse roles of endophytic bacteria in various environments." Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Trujillonella Trujillonella endophytica Gram-positive non-motile non-spore-forming 673521 FOEE00000000.1 Bac0011925 Prevotella bryantii B14 "Prevotella bryantii B14 is a Gram-negative, anaerobic bacterium that is part of the genus Prevotella, known for its role in the human microbiome. As an anaerobe, P. bryantii B14 thrives in environments devoid of oxygen, which is characteristic of various anaerobic niches in the human body, particularly in the oral cavity and gastrointestinal tract. This species is notable for its ability to ferment carbohydrates, contributing to the complex metabolic processes that occur within these ecosystems.↵↵The Gram-negative nature of P. bryantii B14 indicates that it possesses a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with host tissues and other microbial species. The unique properties of this bacterium may play a role in maintaining the balance of the microbiota and influencing host health, although the specific implications of P. bryantii B14 within the microbiome remain to be fully elucidated.↵↵Understanding the traits of P. bryantii B14 enhances our knowledge of microbial communities and their functions in anaerobic environments. Its presence in diverse habitats suggests a potential adaptability to varying conditions within the human body, which may provide insights into the intricate dynamics of microbial interactions and their collective impact on host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella baroniae negative anaerobic 305719 FOEM00000000.1 Bac0011926 Pseudomonas sp. NFACC02 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC02 1566250 FOEO00000000.1 Bac0011927 Pseudomonas soli strain LMG 27941 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas soli 1306993 FOEQ00000000.1 Bac0011928 Butyrivibrio sp. TB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. TB 1520809 FOER00000000.1 Bac0011929 Piscibacillus halophilus strain DSM 21633 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Piscibacillus Piscibacillus halophilus 571933 FOES00000000.1 Bac0011930 Streptomyces radiopugnans strain CGMCC 4.3519 "Streptomyces radiopugnans strain CGMCC 4.3519 is a Gram-positive, aerobic bacterium characterized by its curved or spiral morphology and its ability to form spores. This strain thrives optimally at a temperature of 37.0°C, suggesting a preference for mesophilic conditions, which is typical for many members of the Streptomyces genus. ↵↵The spore-forming capability of S. radiopugnans strain CGMCC 4.3519 is an important trait that allows for survival in fluctuating environmental conditions, contributing to its resilience and potential ecological versatility. The ability to produce spores may also facilitate the dissemination of this microbe in various habitats. ↵↵Overall, the traits of Streptomyces radiopugnans strain CGMCC 4.3519 highlight its adaptive strategies, particularly in aerobic environments, where it likely plays a role in nutrient cycling and soil health. Understanding the characteristics of this strain could provide insights into its potential applications in biotechnology, particularly in the production of antibiotics or other bioactive compounds, reflecting the importance of Streptomyces species in natural product biosynthesis." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces radiopugnans Gram-positive curved/spiral aerobic 37 mesophilic spore-forming 403935 FOET00000000.1 Bac0011931 Streptococcus equinus strain Sb18 "Streptococcus equinus strain Sb18 is a Gram-positive coccus that thrives in various environments, particularly in dairy farms, dairy products, and the gastrointestinal tracts of ruminants, including the rumen. This strain exhibits a facultative anaerobic metabolism, allowing it to adapt to both aerobic and anaerobic conditions, which is advantageous in the diverse habitats it occupies.↵↵The presence of S. equinus strain Sb18 in the gastrointestinal tracts of ruminants suggests a potential role in the fermentation processes that are critical for the digestion of fibrous plant material. Given its habitat in the rumen, this strain may contribute to the microbial community dynamics and nutrient cycling within these ecosystems. Furthermore, its association with dairy products highlights its significance in the dairy industry, possibly influencing the flavor and texture profiles of fermented dairy products.↵↵Understanding the specific physiological traits of S. equinus strain Sb18 can provide insights into its functional contributions to ruminant health and nutrition, as well as its potential applications in dairy fermentation processes. As a member of the complex microbial community in the rumen, this strain exemplifies the intricate relationships between microbes and their hosts, underlining the importance of microbial diversity in agricultural settings." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe dairy farms; dairy products; gastrointestinal tracts of ruminants; rumen 1335 FOEX00000000.1 Bac0011932 Friedmanniella flava strain CGMCC 4.6856 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus flavus 1036181 FOFA00000000.1 Bac0011933 Azotobacter beijerinckii strain DSM 378 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter beijerinckii 170623 FOFJ00000000.1 Bac0011934 Hyunsoonleella jejuensis strain DSM 21035 "Hyunsoonleella jejuensis strain DSM 21035 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0 °C. As a member of the microbial diversity, this strain exemplifies the physiological adaptations that allow certain bacteria to flourish in specific temperature ranges, highlighting the importance of thermal niches in microbial ecology. ↵↵The Gram-negative cell wall structure of H. jejuensis suggests that it possesses an outer membrane containing lipopolysaccharides, a characteristic that may confer certain advantages in terms of environmental resilience and interactions with other microorganisms. Its rod shape is indicative of a morphology that can influence motility and nutrient acquisition in its habitat, although specific ecological roles and interactions remain to be elucidated.↵↵The requirement for aerobic conditions indicates that H. jejuensis relies on oxygen for its metabolic processes, which may influence its distribution and community dynamics in various environments. Overall, the traits of Hyunsoonleella jejuensis strain DSM 21035 reflect adaptations to its ecological niche, providing insights into the metabolic versatility and ecological roles of Gram-negative bacteria in oxygen-rich environments. Understanding these characteristics can contribute to broader discussions on microbial ecology and the functional roles of bacteria within their ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Hyunsoonleella Hyunsoonleella jejuensis Gram-negative rod non-motile aerobic 32 mesophilic 419940 FOFN00000000.1 Bac0011935 Ectothiorhodospira magna strain B7-7 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Ectothiorhodospira Ectothiorhodospira magna 867345 FOFO00000000.1 Bac0011936 Pseudomonas cuatrocienegasensis strain CIP 109853 "Pseudomonas cuatrocienegasensis strain CIP 109853 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This strain is part of the diverse genus Pseudomonas, which is known for its metabolic versatility and ecological significance. Characterized by its rod morphology, P. cuatrocienegasensis exhibits typical traits of the Pseudomonas genus, including the potential for utilizing a wide range of organic compounds as carbon sources.↵↵The optimal growth temperature of 29.0°C indicates that this strain may be well-suited for specific environmental niches that maintain moderate thermal conditions. Its Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane, is indicative of its adaptability in various environments, possibly including soil or freshwater ecosystems.↵↵The absence of sporulation suggests that P. cuatrocienegasensis relies on other survival strategies in response to environmental stresses, such as the production of secondary metabolites or biofilm formation. This trait may confer advantages in competitive environments, allowing the strain to thrive in diverse habitats.↵↵Overall, the physiological characteristics of Pseudomonas cuatrocienegasensis strain CIP 109853 suggest its potential role in biogeochemical cycles, particularly in environments that favor moderate temperatures, underscoring the ecological versatility of the Pseudomonas genus in various ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cuatrocienegasensis Gram-negative rod 29 mesophilic non-spore-forming 543360 FOFP00000000.1 Bac0011937 Lechevalieria xinjiangensis strain CGMCC 4.3525 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea xinjiangensis 402600 FOFR00000000.1 Bac0011938 Lentzea albida strain DSM 44437 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea albida 65499 FOFV00000000.1 Bac0011939 Nitrosomonas ureae strain Nm9 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas ureae 44577 FOFX00000000.1 Bac0011940 Flavobacterium frigoris strain DSM 15719 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium frigoris 229204 FOFZ00000000.1 Bac0011941 Butyrivibrio fibrisolvens strain AR40 "Butyrivibrio fibrisolvens strain AR40 is a Gram-positive, anaerobic curved rod that resides in the rumen of ruminant animals. Despite its structural characteristics suggesting a Gram-positive classification, this strain exhibits a Gram-negative staining profile, indicating a potential anomaly in its cell wall structure or composition. ↵↵As an anaerobic organism, B. fibrisolvens strain AR40 thrives in oxygen-depleted environments, which is typical for microbes inhabiting the rumen, where it plays a significant role in the fermentation of plant materials. This fermentation process is crucial for the digestion of fibrous feeds, contributing to the overall energy metabolism of ruminants. ↵↵The unique morphology and anaerobic nature of B. fibrisolvens strain AR40 suggest an adaptation to its specialized habitat within the rumen, where it likely interacts with other microbial species to facilitate complex carbohydrate breakdown. Understanding the metabolic capabilities and interactions of this strain may provide insights into the efficiency of nutrient utilization in ruminant livestock and contribute to advancements in agricultural practices aimed at improving animal health and productivity." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio fibrisolvens Structurally positive but stains negative Curved rod Yes Anaerobe rumen 831 FOGJ00000000.1 Bac0011942 Streptococcus gallolyticus strain VTM2R47 "Streptococcus gallolyticus strain VTM2R47 is a Gram-positive coccus characterized by its arrangement in chains and pairs, indicating a typical morphology for this genus. This strain is associated with a host environment, suggesting a potential symbiotic or commensal relationship within its ecological niche. As an anaerobic organism, S. gallolyticus strain VTM2R47 thrives in environments devoid of oxygen, which may influence its metabolic pathways and interactions with other microbial communities.↵↵The ability of S. gallolyticus to form chains may enhance its survival and colonization within host tissues, facilitating its persistence in anaerobic conditions. The strain's habitat being host-associated points to a specialized adaptation, allowing it to exploit specific niches within the host where oxygen levels are low. Understanding the ecological role of S. gallolyticus strain VTM2R47 could provide insights into its interactions with the host's microbiota and its potential implications for host health and disease. Further research into its metabolic capabilities and interactions within the host environment may unveil its contributions to host-associated microbiomes, particularly in anaerobic settings." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gallolyticus Positive Cocci No 1 1 Anaerobic Mesophilic HostAssociated Free living Chains - Pairs 315405 FOGM00000000.1 Bac0011943 Corynebacterium cystitidis DSM 20524 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium cystitidis 37 mesophilic 1121357 FOGQ00000000.1 Bac0011944 Rhizobium sp. NFR03 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. NFR03 1566263 FOGR00000000.1 Bac0011945 Halomonas subterranea strain CGMCC 1.6495 "Halomonas subterranea strain CGMCC 1.6495 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and exhibits optimal growth at a temperature of 29.0°C. This strain is part of the Halomonas genus, which is known for its halophilic characteristics, allowing it to inhabit saline environments. The rod morphology is typical for members of this genus, enabling adaptability to various ecological niches. ↵↵The aerobic nature of Halomonas subterranea suggests its reliance on oxygen for metabolic processes, which may implicate it in certain biochemical cycles within its habitat. The optimal temperature of 29.0°C indicates a preference for moderately warm environments, potentially aligning with the thermal conditions found in subterranean or brackish ecosystems where it may be isolated.↵↵The physiological traits of Halomonas subterranea strain CGMCC 1.6495 suggest its potential role in biogeochemical processes, particularly in nutrient cycling in saline and oxygen-rich environments. Further investigation into its metabolic pathways could reveal insights into its ecological functions and applications in bioremediation or industrial biotechnology, especially given the increasing interest in utilizing extremophiles for various biotechnological applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella subterranea Gram-negative rod aerobic 29 mesophilic 416874 FOGS00000000.1 Bac0011946 Roseivivax roseus strain DSM 23042 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tranquillimonas Tranquillimonas rosea 641238 FOGU00000000.1 Bac0011947 Salisediminibacterium haloalkalitolerans strain 10nlg Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salisediminibacterium Salisediminibacterium halotolerans 517425 FOGV00000000.1 Bac0011948 Lachnobacterium bovis strain S1b Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnobacterium Lachnobacterium bovis rumen 140626 FOGW00000000.1 Bac0011949 Psychrobacillus sp. OK032 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Psychrobacillus Psychrobacillus sp. OK032 1884358 FOGY00000000.1 Bac0011950 Propionibacterium cyclohexanicum strain DSM 16859 "Propionibacterium cyclohexanicum strain DSM 16859 is a Gram-positive bacterium primarily associated with various environments, including cheese, milk, pasture, silage, and soil. This strain contributes to the complex microbial communities found in these habitats, particularly in dairy products where it may play a role in fermentation processes. ↵↵Its presence in cheese suggests that P. cyclohexanicum may be involved in flavor development and texture modification during ripening. The strain's adaptability to diverse environments, such as silage and soil, indicates its potential to thrive in different ecological niches, possibly contributing to nutrient cycling and soil health. ↵↵Understanding the ecological roles of P. cyclohexanicum, especially in dairy fermentation, may provide insights into the intricate interactions among microbial communities in food systems. This highlights the importance of this strain within the broader context of microbial ecology and its potential applications in food production and agriculture." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium cyclohexanicum positive cheese; milk; pasture; silage; soil 64702 FOGZ00000000.1 Bac0011951 Pseudobutyrivibrio sp. C4 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. C4 1520803 FOHF00000000.1 Bac0011952 Nitrosospira multiformis strain Nl7 "Nitrosospira multiformis strain Nl7 is a Gram-negative, aerobic bacterium that functions as a lithotrophic autotroph, utilizing inorganic compounds as its energy source. This strain is primarily found in terrestrial habitats, where it plays a significant role in the nitrogen cycle. As a member of the Nitrosospira genus, Nl7 is involved in nitrification processes, specifically the oxidation of ammonia to nitrite, which is a crucial step in the conversion of nitrogenous compounds in the environment.↵↵The autotrophic nature of Nl7 allows it to fix carbon dioxide, using inorganic substrates as energy sources to support its growth and metabolic processes. This capability is particularly important in ecosystems where organic carbon availability may be limited. Furthermore, the aerobic requirement of this strain indicates that it thrives in oxygen-rich environments, which is essential for its metabolic activities.↵↵Understanding the functional traits of Nitrosospira multiformis strain Nl7 contributes to our knowledge of microbial dynamics in soil ecosystems, especially regarding nutrient cycling and the maintenance of soil fertility. The ability of this strain to oxidize ammonia efficiently positions it as a potential key player in the management of nitrogen levels in agricultural practices, highlighting its importance in both ecological and agricultural contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis Negative Yes 1 2 Aerobe Lithotroph - Autotroph Mesophilic Terrestrial Free living 1231 FOHI00000000.1 Bac0011953 Paracoccus homiensis strain DSM 17862 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus homiensis 364199 FOHO00000000.1 Bac0011954 Methanococcoides vulcani strain SLH 33 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides vulcani 1353158 FOHQ00000000.1 Bac0011955 Hymenobacter actinosclerus strain DSM 15310 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter actinosclerus aerobic 82805 FOHS00000000.1 Bac0011956 Draconibacterium orientale strain DSM 25947 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Draconibacterium Draconibacterium orientale 1168034 FOHT00000000.1 Bac0011957 Natronincola peptidivorans strain DSM 18979 Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Natronincola Natronincola peptidivorans anaerobic 426128 FOHU00000000.1 Bac0011958 Thorsellia anophelis DSM 18579 "Thorsellia anophelis DSM 18579 is a Gram-negative, aerobic rod-shaped bacterium characterized by its non-spore-forming nature. This microbe thrives optimally at a temperature of approximately 29.0°C, suggesting a preference for environments that are moderately warm. The rod shape of T. anophelis may contribute to its adaptability in various ecological niches, facilitating motility and nutrient acquisition in its surrounding habitat.↵↵As a Gram-negative organism, T. anophelis possesses a distinctive outer membrane structure that may play a role in its interaction with the environment, including resistance to certain antimicrobial agents. The aerobic requirement indicates that this bacterium relies on oxygen for its metabolic processes, further influencing its ecological distribution and potential symbiotic relationships within its habitat.↵↵The specific ecological role of Thorsellia anophelis remains to be fully elucidated; however, its physiological traits suggest it may inhabit oxygen-rich environments where it participates in the decomposition of organic matter or contributes to nutrient cycling. This adaptation to aerobic conditions highlights its potential importance in maintaining the balance of microbial communities, particularly in aquatic or soil ecosystems where oxygen levels are favorable. Further research may provide insights into the specific interactions and functions of T. anophelis within its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Thorselliaceae Thorsellia Thorsellia anophelis Gram-negative rod aerobic 29 mesophilic non-spore-forming 1123402 FOHV00000000.1 Bac0011959 Pseudomonas graminis strain DSM 11363 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas graminis 158627 FOHW00000000.1 Bac0011960 Prevotella sp. kh1p2 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. kh1p2 1761883 FOHY00000000.1 Bac0011961 Marinobacter segnicrescens strain CGMCC 1.6489 "Marinobacter segnicrescens strain CGMCC 1.6489 is a Gram-negative, ovoid-shaped bacterium that does not form spores and thrives optimally at a temperature of 32.0°C. As a member of the Marinobacter genus, this strain is likely to exhibit characteristics common to marine bacteria, although specific ecological roles or interactions have not been detailed in the provided traits. ↵↵The Gram-negative nature of M. segnicrescens indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various environments, particularly those with fluctuating salinity and temperature. The ovoid shape could be indicative of a specific adaptive strategy in its habitat, potentially affecting its motility and surface attachment mechanisms.↵↵As a non-spore-forming organism, M. segnicrescens may rely on other survival strategies to withstand environmental stressors, such as the production of protective proteins or biofilm formation. The optimal growth temperature of 32.0°C suggests a preference for moderately warm environments, which could correlate with its potential isolation from marine or estuarine ecosystems.↵↵This strain's unique combination of traits may allow it to play a role in biogeochemical cycles within its habitat, possibly influencing nutrient dynamics and microbial community structure in marine ecosystems. Further research could elucidate its specific contributions to these ecological processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter segnicrescens Gram-negative ovoid 32 mesophilic non-spore-forming 430453 FOHZ00000000.1 Bac0011962 Nitrosomonas marina strain Nm71 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas marina 917 FOIA00000000.1 Bac0011963 Anaerobranca gottschalkii DSM 13577 Bacillati Bacillota Clostridia Eubacteriales Proteinivoracaceae Anaerobranca Anaerobranca gottschalkii anaerobic 1120990 FOIF00000000.1 Bac0011964 Paenibacillus sp. NFR01 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. NFR01 1566279 FOIK00000000.1 Bac0011965 [Clostridium] lavalense strain NLAE-zl-G277 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster lavalensis 460384 FOIM00000000.1 Bac0011966 Fabibacter pacificus strain CGMCC 1.12402 "Fabibacter pacificus strain CGMCC 1.12402 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain thrives at an optimal temperature of 37.0°C, indicating a preference for mesophilic conditions typically found in warm environments. The Gram-negative nature of F. pacificus suggests a complex cell wall structure, which may contribute to its adaptability in various ecological niches.↵↵As an aerobic organism, F. pacificus requires oxygen for growth and metabolism, which implicates its potential role in environments where oxygen is readily available. This aerobic characteristic may facilitate its involvement in biogeochemical cycles, particularly those involving carbon and nitrogen, in marine or estuarine ecosystems. The ability to thrive at 37.0°C also suggests that F. pacificus may inhabit environments influenced by warm water sources or thermal gradients.↵↵Overall, the traits of Fabibacter pacificus strain CGMCC 1.12402 indicate its capability to occupy specific ecological niches where temperature and oxygen levels align with its growth requirements. This highlights its potential importance in microbial communities, particularly in contexts where aerobic processes are critical for nutrient cycling and ecosystem dynamics." Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga pacifica Gram-negative rod aerobic 37 mesophilic 1267423 FOIR00000000.1 Bac0011967 Luteibacter sp. 329MFSha Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter sp. 329MFSha 1798239 FOJE00000000.1 Bac0011968 Pedobacter suwonensis strain DSM 18130 "Pedobacter suwonensis strain DSM 18130 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 32.0°C. This strain does not form spores, which may reflect its ecological adaptations to specific environments where sporulation is not a primary survival strategy. ↵↵The rod shape of Pedobacter suwonensis is characteristic of many members of the genus Pedobacter, which are typically found in various environments, including soil and water. The Gram-negative nature of this strain indicates a complex cell envelope structure, featuring an outer membrane that may contribute to its resilience in diverse habitats. ↵↵Given its aerobic requirement, Pedobacter suwonensis likely plays a role in the microbial communities of oxygen-rich environments, potentially participating in biogeochemical cycles, such as the degradation of organic matter. The optimal growth temperature suggests that this strain is well adapted to moderate temperature habitats, which could include temperate soils or freshwater systems. ↵↵Further investigation into the metabolic capabilities and ecological interactions of Pedobacter suwonensis could provide insights into its role in nutrient cycling and its contributions to ecosystem functioning in the environments it inhabits." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter suwonensis Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 332999 FOJM00000000.1 Bac0011969 Paracoccus halophilus strain CGMCC 1.6117 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus halophilus 376733 FOJO00000000.1 Bac0011970 Pseudomonas otitidis strain DSM 17224 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Metapseudomonas Metapseudomonas otitidis aerobic 319939 FOJP00000000.1 Bac0011971 Lentibacillus halodurans strain CGMCC 1.3702 "Lentibacillus halodurans strain CGMCC 1.3702 is a Gram-positive, rod-shaped bacterium recognized for its capacity to form spores. This strain thrives optimally at a temperature of 29.0 °C and exhibits an aerobic metabolism, requiring oxygen for its growth and survival. The ability to form spores is a significant trait, allowing this organism to withstand adverse environmental conditions and contributing to its resilience in various habitats.↵↵As a member of the genus Lentibacillus, this strain is likely to be involved in the degradation of organic materials, potentially playing a role in nutrient cycling within its ecological niche. The aerobic nature of Lentibacillus halodurans suggests a preference for oxygen-rich environments, which may influence its distribution in soil or other environments where organic matter is abundant. Understanding the physiological traits of Lentibacillus halodurans strain CGMCC 1.3702 can provide insights into its ecological role, particularly in processes such as bioremediation or the decomposition of organic waste." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lentibacillus Lentibacillus halodurans Gram-positive rod non-motile aerobic 29 mesophilic spore-forming 237679 FOJW00000000.1 Bac0011972 Selenomonas ruminantium strain L14 "Selenomonas ruminantium strain L14 is a Gram-negative, nonsporulating anaerobic bacterium that thrives as a chemoheterotroph, primarily inhabiting the intestinal microflora of animals. This strain demonstrates optimal growth at 37.0°C, which aligns with the typical body temperature of its mammalian hosts. As a member of the complex microbial community found within the gastrointestinal tract, S. ruminantium strain L14 plays a role in the digestive processes of herbivorous animals, where it likely contributes to the fermentation of complex carbohydrates.↵↵The anaerobic nature of this organism suggests its adaptation to the low-oxygen environments typical of the gut, where it can efficiently utilize organic compounds as energy sources. Its presence in the intestinal ecosystem may be crucial for the breakdown of plant materials, potentially aiding in nutrient absorption and overall gut health for its host.↵↵Understanding the specific metabolic pathways and interactions of Selenomonas ruminantium strain L14 within the gut microbiome could provide insights into its role in nutrient cycling and the maintenance of a healthy intestinal flora. Future research focusing on this strain may elucidate its contributions to digestive efficiency and its interactions with other microbial species present in the ruminant gut, highlighting its ecological significance in animal health and nutrition." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas ruminantium Negative No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 970 FOJX00000000.1 Bac0011973 Cellulomonas marina strain CGMCC 4.6945 "Cellulomonas marina strain CGMCC 4.6945 is a Gram-positive, spherical bacterium characterized by its facultative anaerobic metabolism. This strain thrives optimally at a temperature of 25.0°C, indicating its preference for moderate environmental conditions. Unlike some of its relatives within the genus Cellulomonas, strain CGMCC 4.6945 is non-spore-forming, which may influence its survival strategies under varying environmental stresses.↵↵The facultative anaerobic nature of this strain suggests it possesses the metabolic flexibility to utilize both aerobic and anaerobic pathways for energy production, allowing it to adapt to diverse ecological niches. This adaptability could play a significant role in its ecological interactions, particularly in environments where oxygen levels fluctuate.↵↵Understanding the physiological traits of Cellulomonas marina strain CGMCC 4.6945 may provide insights into its potential applications in biotechnological processes, such as bioremediation or biomass degradation, particularly in marine environments. Its Gram-positive cell structure may also contribute to its resilience and functional capabilities in various substrates. Overall, the unique combination of its morphology, metabolic versatility, and growth preferences positions this strain as a noteworthy subject for further research in microbial ecology and applied microbiology." Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas marina Gram-positive sphere facultative aerobe/anaerobe 25 mesophilic non-spore-forming 988821 FOKA00000000.1 Bac0011974 Cohnella sp. OV330 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella sp. OV330 1855288 FOKE00000000.1 Bac0011975 Algoriphagus aquimarinus strain DSM 23399 "Algoriphagus aquimarinus strain DSM 23399 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This strain is part of the genus Algoriphagus, which is characterized by its adaptation to marine environments. The Gram-negative cell wall structure of A. aquimarinus is indicative of its potential to exhibit diverse metabolic pathways, allowing it to utilize various organic compounds present in its aquatic habitat.↵↵As an aerobic organism, A. aquimarinus requires oxygen for its metabolic processes, which may influence its ecological niche within the marine microbiome. The optimal temperature of 25.0°C suggests that this strain is well-suited for temperate marine conditions, potentially providing insights into its role in nutrient cycling and organic matter decomposition in oceanic ecosystems.↵↵Further studies on the specific metabolic capabilities of A. aquimarinus strain DSM 23399 could reveal its contributions to biogeochemical processes, particularly in the breakdown of complex organic materials in marine environments. Understanding the functional traits of this bacterium may enhance our knowledge of microbial community dynamics and the role of marine bacteria in maintaining ecosystem health." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus aquimarinus Gram-negative rod non-motile aerobic 25 mesophilic 237018 FOKK00000000.1 Bac0011976 Janthinobacterium sp. 344 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. 344 1566280 FOKL00000000.1 Bac0011977 Delftia tsuruhatensis strain LMG 29104 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia tsuruhatensis roots 180282 FOKN00000000.1 Bac0011978 Polaromonas sp. OV174 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. OV174 1855300 FOKZ00000000.1 Bac0011979 Massilia yuzhufengensis strain CGMCC 1.12041 "Massilia yuzhufengensis strain CGMCC 1.12041 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism, thriving optimally at a temperature of 25.0°C. This strain belongs to the genus Massilia, which is characterized by its diverse ecological niches and role in various biogeochemical processes. The Gram-negative nature of M. yuzhufengensis indicates a complex cell wall structure, typically comprising a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may influence its interactions with the environment.↵↵The aerobic requirement of this strain suggests that it relies on oxygen for its metabolic processes, potentially positioning it within environments rich in oxygen availability, such as soil or water bodies. The optimal growth temperature of 25.0°C suggests that this bacterium is well adapted to moderate climates, where it may participate in nutrient cycling and contribute to the microbial diversity of its habitat.↵↵Understanding the physiological traits of Massilia yuzhufengensis strain CGMCC 1.12041 enhances our knowledge of its potential role in ecological interactions and biotechnological applications. For instance, its aerobic characteristics may facilitate its use in bioremediation efforts, particularly in oxygen-rich environments where organic pollutants are present. Further exploration of this strain could reveal insights into its metabolic capabilities and ecological significance within its native environment." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia yuzhufengensis Gram-negative rod aerobic 25 mesophilic non-spore-forming 1164594 FOLD00000000.1 Bac0011980 Flexibacter flexilis DSM 6793 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flexibacteraceae Flexibacter Flexibacter flexilis 927664 FOLE00000000.1 Bac0011981 Tropicimonas isoalkanivorans strain DSM 19548 "Tropicimonas isoalkanivorans strain DSM 19548 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and is obligately aerobic. This strain is characterized by its ability to utilize isoalkanes as a carbon source, which suggests a specialized metabolic pathway adapted for the degradation of these compounds. ↵↵The Gram-negative classification indicates that this microbe possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. Its rod shape is indicative of a common morphology observed in many aerobic bacteria, potentially facilitating efficient nutrient uptake and motility in its ecological niche.↵↵Being obligately aerobic, T. isoalkanivorans relies on oxygen for its metabolic processes, which may limit its habitat to oxygen-rich environments. The optimal growth temperature of 37.0°C aligns with the thermal preferences of many mesophilic microorganisms, suggesting that it may inhabit environments with moderate temperature ranges, possibly including those influenced by human activity or organic matter decomposition.↵↵In summary, T. isoalkanivorans strain DSM 19548 represents a specialized group of bacteria that not only contributes to the biogeochemical cycling of hydrocarbons but also highlights the ecological roles of aerobic microorganisms in the degradation of specific environmental pollutants, particularly isoalkanes." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tropicimonas Tropicimonas isoalkanivorans Gram-negative rod aerobic 37 mesophilic 441112 FOLG00000000.1 Bac0011982 Verrucosispora sediminis strain CGMCC 4.3550 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sediminimaris 547162 FOLJ00000000.1 Bac0011983 Streptomyces aidingensis strain CGMCC 4.5739 "Streptomyces aidingensis strain CGMCC 4.5739 is a Gram-positive, aerobic, spore-forming bacterium that thrives at an optimal temperature of 29.0°C. This strain exhibits the characteristic filamentous growth pattern typical of the Streptomyces genus, which is notable for its complex life cycle involving the formation of spores. The ability to form spores is significant, as it enables the organism to withstand adverse environmental conditions and facilitates its survival in various habitats.↵↵Streptomyces species are renowned for their capacity to produce a diverse array of secondary metabolites, including antibiotics, antifungals, and other bioactive compounds. While specific metabolic capabilities of strain CGMCC 4.5739 are not detailed here, the ecological role of Streptomyces in soil environments is well documented, contributing to nutrient cycling and organic matter decomposition. ↵↵Given the strain's aerobic nature, it likely participates in aerobic microbial communities, playing a potential role in the degradation of organic materials and the promotion of soil health. Furthermore, the optimal growth temperature indicates that this strain may be particularly well adapted to temperate environments, suggesting its potential utility in biotechnological applications related to soil management and bioremediation strategies. Further investigation into the metabolic pathways and ecological interactions of Streptomyces aidingensis strain CGMCC 4.5739 could provide valuable insights into its contributions to ecosystem functioning and microbial diversity." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces aidingensis Gram-positive aerobic 29 mesophilic spore-forming 910347 FOLM00000000.1 Bac0011984 Pseudoalteromonas denitrificans DSM 6059 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas denitrificans 1123010 FOLO00000000.1 Bac0011985 Spirosoma endophyticum strain DSM 26130 "Spirosoma endophyticum strain DSM 26130 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain is optimally active at a temperature of 29.0 °C, suggesting a preference for moderately warm environments, which may influence its ecological niche and interactions with surrounding organisms.↵↵As a non-spore-forming bacterium, S. endophyticum may rely on other survival strategies to endure adverse conditions, potentially affecting its ecological role in its environment. The aerobic nature of this strain indicates that it requires oxygen for growth, which may limit its habitat to well-aerated environments. This trait can also imply a competitive advantage in environments where oxygen is readily available, allowing it to thrive alongside other aerobic microorganisms.↵↵Understanding the traits of Spirosoma endophyticum can provide insights into its potential role in ecological processes, such as nutrient cycling and interactions with plant hosts, where endophytic bacteria often reside. The combination of its specific morphological, physiological, and environmental preferences highlights the importance of further research to elucidate its ecological significance and potential applications in biotechnology or agriculture." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma endophyticum Gram-negative rod aerobic 29 mesophilic non-spore-forming 662367 FOLQ00000000.1 Bac0011986 Pseudooceanicola nitratireducens strain DSM 29619 "Pseudooceanicola nitratireducens strain DSM 29619 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C and exhibits aerobic metabolic characteristics. This strain is part of the genus Pseudooceanicola, which is recognized for its potential involvement in biogeochemical cycles, particularly in nitrate reduction processes. The Gram-negative nature of this microbe suggests a complex cell wall structure, typically characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions within aquatic environments.↵↵The aerobic requirement indicates that P. nitratireducens relies on oxygen for its energy production, which may position it strategically in environments that are oxygenated, possibly influencing its ecological niche in marine or freshwater habitats. The optimal growth temperature of 29.0°C suggests a preference for warm environments, which could correlate with specific ecological settings such as thermally stable aquatic systems.↵↵Considering these traits, Pseudooceanicola nitratireducens strain DSM 29619 may play a significant role in nitrogen cycling, particularly in environments where nitrate levels are elevated, thereby contributing to the overall health and balance of microbial communities in its native habitat. The bacterium's ability to thrive in aerobic conditions while participating in nitrate reduction could provide insight into its potential applications in bioremediation efforts aimed at mitigating nitrogen pollution in aquatic ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola nitratireducens Gram-negative rod aerobic 29 mesophilic 517719 FOLX00000000.1 Bac0011987 Devosia psychrophila strain CGMCC 1.10210 "Devosia psychrophila strain CGMCC 1.10210 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 16.0 °C and requires aerobic conditions for its metabolic processes. This psychrophilic organism is adapted to thrive in cold environments, which is reflected in its growth temperature preference. The Gram-negative nature of this microbe indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a structural characteristic that may contribute to its resilience in fluctuating temperatures and challenging environmental conditions.↵↵The strain's aerobic requirement suggests that it relies on oxygen for its energy production, which is typical among many bacteria adapted to oxygen-rich habitats. This adaptation may facilitate its survival and metabolic efficiency in cold, oxygen-saturated environments, such as polar regions or deep-sea habitats. ↵↵The physiological traits of Devosia psychrophila strain CGMCC 1.10210 not only highlight its potential for biotechnological applications in cold bioprocesses but also underscore the ecological significance of psychrophilic microorganisms in nutrient cycling and organic matter degradation in cold ecosystems. Such organisms play a crucial role in maintaining microbial diversity and ecological balance in their native habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia psychrophila Gram-negative rod aerobic 16 psychrotolerant 728005 FOMB00000000.1 Bac0011988 Clostridium uliginosum strain DSM 12992 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium uliginosum anaerobic 119641 FOMG00000000.1 Bac0011989 Flavobacterium phragmitis strain CGMCC 1.10370 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium phragmitis 739143 FOMH00000000.1 Bac0011990 Lactobacillus bombicola strain R-53102 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus bombicola 1505723 FOMN00000000.1 Bac0011991 Lentibacillus persicus strain DSM 22530 "Lentibacillus persicus strain DSM 22530 is a Gram-positive, rod-shaped bacterium known for its ability to form spores. This strain optimally grows at a temperature of 32.0°C and exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. Its spore-forming capability suggests an adaptation to withstand adverse environmental conditions, which may contribute to its survival in diverse habitats. ↵↵The combination of its Gram-positive cell wall structure and the ability to form spores makes Lentibacillus persicus particularly resilient, potentially allowing it to endure periods of nutrient scarcity or extreme conditions. This dual metabolic versatility could provide insights into its ecological role, indicating that it might be found in environments where oxygen levels fluctuate or where it is necessary to endure stressors. ↵↵Understanding the physiological traits of Lentibacillus persicus strain DSM 22530 may shed light on its potential applications in biotechnology, particularly in processes where microbial resilience and adaptability are advantageous. This strain's facultative lifestyle, coupled with its capability for sporulation, underscores its ecological significance in various microbial communities and its potential utility in bioprocessing and bioremediation efforts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lentibacillus Lentibacillus persicus Gram-positive rod facultative aerobe/anaerobe 32 mesophilic spore-forming 640948 FOMR00000000.1 Bac0011992 Kosakonia sp. S29 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Phytobacter palmae 1855371 FONB00000000.1 Bac0011993 Marinobacter sp. DSM 26671 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. DSM 26671 1761793 FONF00000000.1 Bac0011994 Thermoanaerobacter thermohydrosulfuricus strain DSM 7021 "Thermoanaerobacter thermohydrosulfuricus strain DSM 7021 is a rod-shaped, nonsporulating bacterium that thrives in anaerobic environments and is characterized as a chemoheterotroph, utilizing organic compounds as its energy source. This strain exhibits optimal growth at a temperature of 70.0°C, indicating its adaptation to high-temperature habitats, which may include geothermal environments or hot springs.↵↵The anaerobic nature of T. thermohydrosulfuricus suggests a metabolic reliance on fermentation processes, allowing it to thrive in oxygen-deprived conditions where it can outcompete aerobic microorganisms. Its ability to inhabit multiple environments indicates a versatile lifestyle, potentially contributing to various biogeochemical cycles, particularly in thermophilic and sulfidogenic settings.↵↵This strain's metabolic capabilities may play a significant role in the degradation of organic matter in high-temperature ecosystems, providing insights into microbial community dynamics and nutrient cycling in such extreme habitats. Understanding the physiological and ecological traits of T. thermohydrosulfuricus may also have implications for biotechnological applications, including bioenergy production and bioremediation strategies in thermophilic environments." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter ethanolicus Rod No 1 Anaerobic 70 Chemoheterotroph Thermophilic Multiple Nonsporulating 1757 FONI00000000.1 Bac0011995 Peptostreptococcaceae bacterium pGA-8 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcaceae bacterium pGA-8 1520829 FONK00000000.1 Bac0011996 Succiniclasticum ruminis DSM 9236 Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Succiniclasticum Succiniclasticum ruminis 1123323 FONL00000000.1 Bac0011997 Paenibacillus algorifonticola strain CGMCC 1.10223 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus algorifonticola 684063 FONN00000000.1 Bac0011998 Pedobacter antarcticus strain ATCC 51969 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter antarcticus 34086 FONS00000000.1 Bac0011999 Alteribacillus iranensis strain DSM 23995 "Alteribacillus iranensis strain DSM 23995 is a rod-shaped, aerobic bacterium that forms spores and thrives at an optimal temperature of 37.0°C. This strain exhibits the characteristic features of the genus Alteribacillus, which is known for its ability to adapt to a range of environmental conditions. The spore-forming capability of strain DSM 23995 suggests its potential resilience in fluctuating environments, allowing it to survive harsh conditions that would be detrimental to non-spore-forming microorganisms.↵↵The aerobic nature of this strain indicates that it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. The optimal growth temperature of 37.0°C positions it within the range typically associated with many mesophilic bacteria, suggesting that it may inhabit environments that are warm, such as soil or decaying organic matter.↵↵Understanding the traits of Alteribacillus iranensis strain DSM 23995 can provide insight into its potential roles in biogeochemical cycles, particularly in the degradation of organic materials where oxygen is available. Its spore-forming ability may enhance its survival and ecological function in diverse habitats, including those subjected to seasonal or anthropogenic changes. Future studies could explore its metabolic pathways and interactions within microbial communities, contributing to the broader understanding of its ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alteribacillus Alteribacillus iranensis rod aerobic 37 mesophilic spore-forming 930128 FONT00000000.1 Bac0012000 Sanguibacter marinus strain DSM 19083 Bacillati Actinomycetota Actinomycetes Micrococcales Jonesiaceae Flavimobilis Flavimobilis marinus 285351 FONZ00000000.1 Bac0012001 Aureimonas phyllosphaerae strain L9-753 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas phyllosphaerae 1166078 FOOA00000000.1 Bac0012002 Mycobacterium sp. 455mf Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 455mf 1761812 FOOB00000000.1 Bac0012003 Clostridium cadaveris strain NLAE-zl-G419 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium cadaveris anaerobic soil 1529 FOOE00000000.1 Bac0012004 Halobacillus alkaliphilus strain FP5 "Halobacillus alkaliphilus strain FP5 is a Gram-positive, aerobic, spore-forming bacterium characterized by its spherical shape. This strain exhibits optimal growth at a temperature of 37.0 °C, indicating its preference for mesophilic conditions. As a member of the Halobacillus genus, it is notable for its ability to thrive in alkaline environments, which may suggest adaptations that confer resilience to high pH levels. ↵↵The spore-forming capability of Halobacillus alkaliphilus strain FP5 is significant, as it allows the organism to withstand adverse environmental conditions, including desiccation and nutrient depletion. This trait enhances its ecological versatility, potentially enabling it to survive in extreme habitats where competition with other microorganisms is limited. ↵↵Given its aerobic nature, this strain likely plays a role in the biogeochemical cycling of nutrients in alkaline ecosystems, where oxygen availability may influence microbial community dynamics. The ability to form spores further suggests that Halobacillus alkaliphilus strain FP5 could be an important contributor to soil health and stability in such environments, where it may assist in the breakdown of organic matter and the release of essential nutrients. Understanding the physiological and ecological roles of this strain could provide insights into microbial life in extreme alkaline conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus alkaliphilus Gram-positive sphere non-motile aerobic 37 mesophilic spore-forming 396056 FOOG00000000.1 Bac0012005 Actinopolymorpha cephalotaxi strain CPCC 202808 "Actinopolymorpha cephalotaxi strain CPCC 202808 is a Gram-positive bacterium that exhibits aerobic metabolism and thrives at an optimal growth temperature of 29.0 °C. This strain belongs to a genus known for its filamentous morphology, which is characteristic of many members within this taxonomic group. ↵↵The Gram-positive nature of A. cephalotaxi indicates a thick peptidoglycan layer in its cell wall, a feature that is often associated with certain biochemical activities and environmental adaptations. As an aerobic organism, this strain relies on molecular oxygen for its metabolic processes, which may suggest a preference for environments rich in oxygen, potentially influencing its ecological niche.↵↵The optimal growth temperature of 29.0 °C indicates that A. cephalotaxi is well-suited for mesophilic conditions, which are commonly found in various terrestrial and aquatic ecosystems. This temperature preference may allow the strain to inhabit environments where moderate thermal conditions prevail, such as soil or decaying organic matter.↵↵Understanding the specific metabolic pathways and ecological roles of Actinopolymorpha cephalotaxi strain CPCC 202808 could provide insights into its potential contributions to nutrient cycling or its interactions with other microbial communities. Its aerobic nature, combined with its optimal growth temperature, may also position it as a key player in the biodegradation of organic materials in warmer habitats." Bacillati Actinomycetota Actinomycetes Propionibacteriales Actinopolymorphaceae Actinopolymorpha Actinopolymorpha cephalotaxi Gram-positive aerobic 29 mesophilic 504797 FOOI00000000.1 Bac0012006 Pontibacter chinhatensis strain LP51 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter chinhatensis 1436961 FOOT00000000.1 Bac0012007 Prevotella sp. KH2C16 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. KH2C16 1855325 FOOW00000000.1 Bac0012008 Bacillus megaterium strain ATCC 14581 "Bacillus megaterium strain ATCC 14581 is a Gram-positive, rod-shaped bacterium known for its ability to form spores, making it a model organism for studies in sporulation and stress resistance. As an aerobic microbe, it requires oxygen for its metabolic processes, which aligns with its distribution across multiple habitats, indicating a versatile ecological presence. ↵↵This strain exhibits robust growth patterns and is often utilized in various biotechnological applications due to its metabolic capabilities. The ability to sporulate allows B. megaterium to survive in adverse environmental conditions, contributing to its resilience and adaptability. ↵↵Bacillus megaterium has been studied extensively in the context of its potential uses in agriculture and industry, particularly for its role in producing enzymes and biopolymers. Its ecological versatility, coupled with its sporulation ability, highlights its significance in nutrient cycling within diverse ecosystems. This adaptability may also provide insights into microbial survival strategies in fluctuating environments, emphasizing the ecological importance of B. megaterium in maintaining microbial diversity and function." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 FOPA00000000.1 Bac0012009 Lachnospiraceae bacterium C7 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium C7 1792306 FOPE00000000.1 Bac0012010 Oribacterium sp. WCC10 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Oribacterium Oribacterium sp. WCC10 1855343 FOPH00000000.1 Bac0012011 Lactobacillus ruminis DSM 20403 = NBRC 102161 "Lactobacillus ruminis DSM 20403, also known as NBRC 102161, is a Gram-positive, rod-shaped bacterium that thrives in the human gut as a facultative anaerobe. This microbe is part of the diverse community of microorganisms residing in the gastrointestinal tract, where it plays a role in the fermentation of carbohydrates and the maintenance of gut health. ↵↵As a member of the Lactobacillus genus, L. ruminis exhibits the ability to metabolize sugars into lactic acid, which may contribute to the overall acidic environment of the gut, potentially inhibiting the growth of pathogenic organisms. The facultative anaerobic nature of this species allows it to adapt to varying oxygen levels within the gut, making it versatile in its metabolic processes.↵↵In addition to its role in fermentation, L. ruminis is believed to interact with the gut microbiota, possibly influencing the immune response and overall gut homeostasis. The presence of such lactic acid bacteria is often associated with beneficial effects, including improved digestion and potential protection against gastrointestinal disorders.↵↵Understanding the specific functions and interactions of Lactobacillus ruminis within the gut ecosystem may provide insights into its contributions to human health, particularly in relation to gut microbiome stability and metabolic health. Further research into this microbe could elucidate its potential roles in probiotic applications and overall gut health maintenance." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ruminis Positive Rod Facultative anaerobe human gut 1623 FOPI00000000.1 Bac0012012 Corynebacterium spheniscorum strain J11 "Corynebacterium spheniscorum strain J11 is a Gram-positive bacterium characterized by its non-spore-forming nature. This strain, belonging to the genus Corynebacterium, exhibits the typical club-shaped morphology associated with many members of this group. Its Gram-positive staining indicates a thick peptidoglycan layer in its cell wall, which is a defining feature of this bacterial classification.↵↵The non-sporulating trait of C. spheniscorum strain J11 suggests that it relies on other survival strategies rather than sporulation to endure unfavorable environmental conditions. This characteristic may influence its ecological niche, potentially limiting its distribution to environments where nutrient availability is relatively stable and where it can thrive without the need for spore formation as a survival mechanism.↵↵Research into the metabolic pathways of C. spheniscorum strain J11 could provide insights into its ecological role, particularly in its interactions with other microbial species within its habitat. Understanding these interactions may reveal its contributions to nutrient cycling or its potential use in biotechnological applications. Overall, Corynebacterium spheniscorum strain J11 exemplifies the diverse adaptations of bacteria within the Corynebacterium genus, highlighting the importance of exploring their ecological functions and interactions in various environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium spheniscorum Gram-positive non-motile non-spore-forming 185761 FOPJ00000000.1 Bac0012013 Paracoccus aminovorans strain DSM 8537 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus aminovorans 34004 FOPU00000000.1 Bac0012014 Cryobacterium levicorallinum strain GMCC 1.11211 "Cryobacterium levicorallinum strain GMCC 1.11211 is a Gram-positive, rod-shaped bacterium that exhibits an optimal growth temperature of 16.0°C and requires aerobic conditions for metabolism. This strain, belonging to the genus Cryobacterium, is characterized by its morphological and physiological adaptations to cooler environments, which may be indicative of its ecological niche.↵↵As a Gram-positive organism, C. levicorallinum possesses a thick peptidoglycan layer in its cell wall, which is typical of this classification. This structural feature may contribute to its resilience in certain environmental conditions, potentially influencing its interactions with other microorganisms and its overall survival in its habitat.↵↵The preference for an optimal growth temperature of 16.0°C suggests that this strain may thrive in cold environments, such as those found in polar or high-altitude regions. Aerobic respiration indicates that it relies on oxygen for energy production, which could further limit its distribution to well-aerated ecosystems.↵↵The unique thermal and oxygen requirements of Cryobacterium levicorallinum strain GMCC 1.11211 may reflect its adaptation to specific ecological niches where temperature fluctuations and oxygen availability are critical factors. Understanding the physiological traits of this microbe can provide insights into its role within microbial communities in cold environments, as well as its potential responses to climate change, which may alter the habitats it occupies." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium levicorallinum Gram-positive rod aerobic 16 psychrotolerant 995038 FOPW00000000.1 Bac0012015 Pseudobutyrivibrio sp. OR37 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. OR37 1798186 FOQF00000000.1 Bac0012016 Albimonas pacifica strain CGMCC 1.11030 "Albimonas pacifica strain CGMCC 1.11030 is a Gram-negative, rod-shaped bacterium that requires aerobic conditions for growth and exhibits an optimal growth temperature of 29.0 °C. This microbe is characterized by its non-spore-forming nature, which suggests that it relies on other survival strategies in response to environmental stresses, rather than entering a dormant spore state.↵↵The Gram-negative classification indicates a distinct structural composition, including a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various environments. The aerobic requirement implies that Albimonas pacifica strain CGMCC 1.11030 utilizes oxygen for its metabolic processes, which may influence its ecological niche, potentially positioning it in oxygen-rich habitats such as marine environments or soil where aerobic conditions prevail.↵↵The optimal growth temperature of 29.0 °C suggests a preference for moderate thermal conditions, which aligns with habitats that experience temperate climates. Understanding the specific environmental conditions that favor the growth of this strain could provide insights into its ecological roles, particularly in nutrient cycling or interactions with other microbial communities. Such knowledge may also aid in elucidating its potential applications in biotechnology or environmental remediation, where aerobic processes are often critical." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Albimonas Albimonas pacifica Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1114924 FOQH00000000.1 Bac0012017 Pseudomonas guineae strain LMG 24016 "Pseudomonas guineae strain LMG 24016 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and is non-spore-forming. This strain thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments. Its Gram-negative classification suggests that it possesses a characteristic outer membrane, which may confer specific resistance properties and influence its interactions within various ecological niches. ↵↵As an aerobic organism, Pseudomonas guineae strain LMG 24016 likely plays a role in environments with adequate oxygen availability, potentially participating in the degradation of organic compounds or influencing nutrient cycles. The strain's inability to form spores may suggest a reliance on its immediate environmental conditions for survival and reproduction, making it sensitive to fluctuations in habitat quality.↵↵Given its optimal growth temperature, Pseudomonas guineae strain LMG 24016 may inhabit temperate ecosystems, where cooler temperatures prevail. This adaptability could position it as a significant player in microbial communities within such environments, potentially contributing to the biogeochemical processes that sustain these ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas guineae Gram-negative rod aerobic 16 psychrotolerant non-spore-forming 425504 FOQL00000000.1 Bac0012018 Parapedobacter indicus strain RK1 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Parapedobacter Parapedobacter indicus 1477437 FOQO00000000.1 Bac0012019 Paraburkholderia megapolitana strain LMG 23650 "Paraburkholderia megapolitana strain LMG 23650 is a Gram-negative, non-spore-forming bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0 °C. This strain is part of the diverse genus Paraburkholderia, which is known for its metabolic versatility and ability to inhabit various environments.↵↵As a Gram-negative organism, P. megapolitana possesses a characteristic outer membrane that may contribute to its resilience in different ecological niches. The non-spore-forming nature of this bacterium suggests that it relies on vegetative growth for reproduction and survival, which may limit its ability to withstand extreme environmental stresses compared to spore-forming taxa. ↵↵The preference for aerobic conditions indicates that P. megapolitana utilizes oxygen for its metabolic processes, potentially allowing it to occupy ecological roles where oxygen is readily available. The optimal growth temperature of 29.0 °C aligns with warm, temperate habitats, pointing to a possible adaptation to specific environmental conditions.↵↵Overall, the growth characteristics of Paraburkholderia megapolitana strain LMG 23650 suggest it may play a role in nutrient cycling in aerobic environments, particularly in ecosystems where organic matter decomposition occurs at moderate temperatures. Understanding these traits can provide insights into its potential applications in bioremediation or other biotechnological processes." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia megapolitana Gram-negative non-motile aerobic 29 mesophilic non-spore-forming 420953 FOQU00000000.1 Bac0012020 Streptosporangium canum strain CGMCC 4.2126 "Streptosporangium canum strain CGMCC 4.2126 is a Gram-positive, rod-shaped bacterium known for its ability to form spores. This strain exhibits optimal growth at a temperature of 29.0°C, which suggests a preference for moderate thermophilic conditions. As a member of the genus Streptosporangium, it is expected to possess characteristics typical of the group, including a complex life cycle that involves sporulation, allowing it to survive in fluctuating environmental conditions.↵↵The spore-forming capability of S. canum strain CGMCC 4.2126 is significant, as it may contribute to its resilience and adaptability in various habitats. While the specific ecological niche of this strain remains to be fully elucidated, the ability to produce spores is often associated with survival strategies in nutrient-limited or stressful environments. This trait allows the organism to endure unfavorable conditions, potentially enabling it to inhabit diverse ecological settings where other microorganisms may not thrive.↵↵Understanding the physiological characteristics of Streptosporangium canum strain CGMCC 4.2126 not only enhances our knowledge of microbial diversity but also provides insights into its potential applications in biotechnology, particularly in areas that exploit its spore-forming ability for the development of sustainable agricultural practices or bioprocesses. Further research will be necessary to explore these applications and the ecological roles of this strain in its natural environment." Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium canum Gram-positive rod non-motile 29 mesophilic spore-forming 324952 FOQY00000000.1 Bac0012021 Aquamicrobium aerolatum DSM 21857 "Aquamicrobium aerolatum DSM 21857 is a Gram-negative, aerobic rod-shaped bacterium that does not form spores. This organism is characterized by its unique morphological and physiological traits, which distinguish it from other microbial species. The Gram-negative cell wall structure of A. aerolatum is indicative of its outer membrane, which may contribute to its adaptability in various environments.↵↵As an aerobic microbe, A. aerolatum relies on oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. Its rod shape may facilitate motility and nutrient absorption, potentially allowing for efficient colonization of its ecological niche. The absence of sporulation suggests that A. aerolatum has alternative survival strategies for adverse conditions, likely involving metabolic flexibility and resilience in fluctuating environments.↵↵The unique combination of traits exhibited by A. aerolatum positions it as a candidate for further studies in microbial ecology and biotechnology. Its aerobic nature and non-spore-forming characteristic may provide insights into its role in biogeochemical cycles, particularly in aquatic ecosystems where oxygen levels fluctuate. Understanding the adaptive mechanisms of A. aerolatum could enhance our knowledge of microbial interactions in these environments and inform potential applications in environmental management or bioremediation strategies." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aerobium Aerobium aerolatum Gram-negative rod aerobic non-spore-forming 1121003 FORF00000000.1 Bac0012022 Xenorhabdus mauleonii strain DSM 17908 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus mauleonii 351675 FORG00000000.1 Bac0012023 Celeribacter neptunius strain DSM 26471 "Celeribacter neptunius strain DSM 26471 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, thriving optimally at a temperature of 25.0°C. As a non-spore-forming organism, this strain demonstrates metabolic versatility, allowing it to adapt to varying oxygen conditions in its environment.↵↵The Gram-negative nature of Celeribacter neptunius indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which could play a role in its interaction with various substrates and potential antimicrobial agents. Its rod shape is typical of many bacteria, potentially influencing its motility and colonization patterns in diverse environments.↵↵The facultative lifestyle of Celeribacter neptunius suggests that it can utilize both aerobic and anaerobic respiration pathways, enabling it to occupy a range of ecological niches where oxygen availability fluctuates. This adaptability may confer survivability in environments that undergo periodic changes in oxygen levels, such as sediments in aquatic ecosystems.↵↵Overall, the physiological traits of Celeribacter neptunius strain DSM 26471 underscore its potential role in biogeochemical cycles, particularly in aquatic habitats where organic matter decomposition occurs under varying oxygen conditions. The ability to thrive in such dynamic environments could provide insights into its contributions to nutrient cycling and microbial community dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter neptunius Gram-negative rod facultative aerobe/anaerobe 25 mesophilic non-spore-forming 588602 FORH00000000.1 Bac0012024 Treponema bryantii strain XBD1002 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema bryantii Yes 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 163 FORI00000000.1 Bac0012025 Ruminococcaceae bacterium D5 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium D5 1520815 FORK00000000.1 Bac0012026 Chryseobacterium treverense strain DSM 22251 "Chryseobacterium treverense strain DSM 22251 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This microbe demonstrates optimal growth at a temperature of 16.0 °C, indicating a preference for cooler environments, which may be reflective of its ecological niche. ↵↵As a member of the genus Chryseobacterium, this strain is characterized by its ability to thrive in various environments, particularly in aquatic and soil habitats. While the specific ecological roles and interactions of C. treverense strain DSM 22251 remain to be fully elucidated, its growth at low temperatures suggests potential adaptations for survival in temperate or cold ecosystems. ↵↵The non-spore-forming nature of this bacterium may limit its resilience to extreme environmental stresses compared to spore-forming counterparts; however, its aerobic requirements indicate a reliance on oxygen-rich environments for metabolic processes. This trait may position C. treverense as a key player in nutrient cycling within its habitat, contributing to the degradation of organic materials under aerobic conditions.↵↵Overall, Chryseobacterium treverense strain DSM 22251 exemplifies the diversity of microbial life capable of thriving in specialized niches, highlighting the importance of temperature and oxygen availability in shaping microbial communities." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella treverensis Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 631455 FORQ00000000.1 Bac0012027 Thermoflavimicrobium dichotomicum strain DSM 44778 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Thermoflavimicrobium Thermoflavimicrobium dichotomicum 46223 FORR00000000.1 Bac0012028 Marinobacter persicus strain IBRC-M 10445 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter persicus 930118 FOSC00000000.1 Bac0012029 Cellulomonas sp. KH9 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. KH9 1855324 FOSE00000000.1 Bac0012030 Nitrosomonas aestuarii strain Nm69 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas aestuarii 52441 FOSP00000000.1 Bac0012031 Azotobacter beijerinckii strain DSM 381 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter beijerinckii 170623 FOSX00000000.1 Bac0012032 Lachnospiraceae bacterium KH1T2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium KH1T2 1855374 FOSY00000000.1 Bac0012033 Methanobrevibacter olleyae strain DSM 16632 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae 294671 FOTL00000000.1 Bac0012034 Desulfomicrobium norvegicum strain DSM 1741 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium norvegicum anaerobic 52561 FOTO00000000.1 Bac0012035 Bradyrhizobium sp. NFR13 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. NFR13 1566285 FOTP00000000.1 Bac0012036 Gracilibacillus orientalis strain CGMCC 1.4250 "Gracilibacillus orientalis strain CGMCC 1.4250 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities. This strain thrives optimally at a temperature of 37.0°C and is obligately aerobic, requiring oxygen for growth and metabolic processes.↵↵As a member of the Gracilibacillus genus, G. orientalis may possess unique biochemical pathways that enable it to exploit specific ecological niches, potentially contributing to its adaptability in various environments. The ability to form spores suggests a survival strategy that allows the organism to withstand adverse conditions, which may be critical for its persistence in fluctuating environments. The optimal growth temperature of 37.0°C indicates a preference for mesophilic conditions, aligning with the temperatures typically found in many terrestrial and host-associated habitats.↵↵This combination of traits suggests that G. orientalis may play a role in the microbial community dynamics within its habitat, potentially influencing nutrient cycling or interacting with other microorganisms. Further research into its ecological interactions and functional roles in its environment could provide valuable insights into the ecological significance of this bacterium." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gracilibacillus Gracilibacillus orientalis Gram-positive rod aerobic 37 mesophilic spore-forming 334253 FOTR00000000.1 Bac0012037 Marinobacter salarius strain DSM 26291 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter salarius 1420917 FOTV00000000.1 Bac0012038 Rugamonas rubra strain ATCC 43154 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Rugamonas Rugamonas rubra 758825 FOTW00000000.1 Bac0012039 Pseudomonas yangmingensis strain DSM 24213 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas yangmingensis 1720063 FOUI00000000.1 Bac0012040 Bradyrhizobium sp. Rc3b Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Rc3b 1855322 FOUS00000000.1 Bac0012041 Chryseobacterium oleae strain DSM 25575 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium oleae aerobic 491207 FOVD00000000.1 Bac0012042 Pantoea sp. OV426 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Candidatus Pantoea varia 1881036 FOVG00000000.1 Bac0012043 Flavobacterium ummariense strain DS-12 "Flavobacterium ummariense strain DS-12 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for mesophilic environments. ↵↵As a member of the genus Flavobacterium, strain DS-12 is likely to play a role in the biogeochemical cycling of organic matter, particularly in aquatic environments where such bacteria are commonly found. Its aerobic nature indicates that it requires oxygen for growth, which aligns with the typical ecological niches inhabited by Flavobacterium species, often associated with decomposing organic materials and nutrient-rich waters.↵↵Understanding the physiological traits of Flavobacterium ummariense strain DS-12 not only enhances our knowledge of microbial diversity but also underscores the importance of such bacteria in ecosystem functioning. Their role in organic matter decomposition can contribute to nutrient recycling, influencing the productivity and health of aquatic ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Paenimyroides Paenimyroides ummariense Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 913024 FOVI00000000.1 Bac0012044 Roseovarius lutimaris strain DSM 28463 "Roseovarius lutimaris strain DSM 28463 is a Gram-negative, ovoid-shaped bacterium that exhibits aerobic respiration and thrives optimally at a temperature of 29.0°C. This strain is part of the Roseovarius genus, which is characterized by its unique morphological and physiological traits that allow it to adapt to specific environmental conditions.↵↵As a Gram-negative organism, R. lutimaris possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group and contributes to its overall structural integrity and resistance to certain antibiotics. The ovoid shape of the cells may facilitate efficient nutrient uptake and adaptation to its ecological niche, although the specific ecological role of this strain within its environment remains to be fully elucidated.↵↵The preference for an aerobic environment indicates that R. lutimaris relies on oxygen for its metabolic processes, which may suggest a capability for utilizing a variety of organic substrates in the presence of oxygen. This trait aligns with the ecological roles typically played by members of the Roseovarius genus, which are often found in marine environments, potentially contributing to nutrient cycling.↵↵In summary, the properties of Roseovarius lutimaris strain DSM 28463, including its Gram-negative nature, ovoid morphology, and aerobic metabolism, suggest that it is well-adapted to specific ecological niches that support its growth at moderate temperatures, potentially influencing microbial community dynamics in marine ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius lutimaris Gram-negative ovoid aerobic 29 mesophilic 1005928 FOVP00000000.1 Bac0012045 Pseudobutyrivibrio sp. UC1225 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. UC1225 rumen 1798185 FOVQ00000000.1 Bac0012046 Cohaesibacter marisflavi strain CGMCC 1.9157 "Cohaesibacter marisflavi strain CGMCC 1.9157 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, thriving optimally at a temperature of 29.0°C. This organism's Gram-negative status suggests a complex cell wall structure, which includes a thin peptidoglycan layer surrounded by an outer membrane, potentially contributing to its adaptability in various environmental conditions. As a rod-shaped bacterium, Cohaesibacter marisflavi may possess unique motility characteristics that facilitate its movement through aqueous environments, which is significant given its marine nomenclature.↵↵The facultative nature of Cohaesibacter marisflavi indicates its ability to survive in both oxygen-rich and oxygen-depleted environments, allowing it to thrive in diverse ecological niches. This adaptability may play a crucial role in its interactions within microbial communities, particularly in fluctuating oxygen conditions commonly found in marine environments.↵↵Given these traits, Cohaesibacter marisflavi strain CGMCC 1.9157 may contribute to biogeochemical processes in its habitat, such as nutrient cycling and organic matter decomposition, highlighting its potential importance in marine ecosystems. Further studies could elucidate its specific ecological roles and interactions with other marine microorganisms." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Cohaesibacteraceae Cohaesibacter Cohaesibacter marisflavi Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 655353 FOVR00000000.1 Bac0012047 Pseudomonas syringae strain BS0292 "Pseudomonas syringae strain BS0292 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, which allows it to thrive in diverse habitats. As an aerobic organism, P. syringae BS0292 requires oxygen for its metabolic processes, aligning with the typical respiratory characteristics observed in many Pseudomonas species.↵↵The ability of P. syringae strains to adapt to various environments may contribute to their ecological versatility, enabling them to inhabit a range of niches, from soil to plant surfaces. The adaptability of Pseudomonas syringae strain BS0292 to different ecological contexts highlights its potential role in biogeochemical cycles, particularly in the degradation of organic materials. This characteristic may provide insights into the strain's contribution to nutrient cycling and its interactions within microbial communities. Further studies could elucidate the specific metabolic pathways employed by this strain in its diverse habitats, enhancing our understanding of its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 FOVV00000000.1 Bac0012048 Pseudobutyrivibrio sp. JW11 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. JW11 1855302 FOWB00000000.1 Bac0012049 Amycolatopsis rubida strain DSM 44637 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis rubida 29 mesophilic 112413 FOWC00000000.1 Bac0012050 Anaerocolumna aminovalerica strain DSM 1283 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Anaerocolumna aminovalerica anaerobic 1527 FOWD00000000.1 Bac0012051 Geodermatophilus obscurus strain DSM 43161 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus obscurus 1861 FOWE00000000.1 Bac0012052 Variovorax sp. PDC80 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. PDC80 1882827 FOWG00000000.1 Bac0012053 Acidaminococcus fermentans strain pGA-4 "Acidaminococcus fermentans strain pGA-4 is a Gram-negative coccus that exhibits strict anaerobic growth requirements. This microbe is part of a genus known for its ability to ferment amino acids, which plays an important role in various ecological niches, particularly in anaerobic environments such as the human gastrointestinal tract. The spherical morphology of Acidaminococcus fermentans indicates its adaptation to life in low-oxygen conditions, where it likely participates in the degradation of organic matter and the fermentation of nutrients.↵↵The anaerobic nature of this strain suggests its potential involvement in metabolic pathways that contribute to the overall microbial community dynamics within its habitat. By fermenting amino acids, Acidaminococcus fermentans strain pGA-4 not only generates energy for its own growth but may also influence the availability of nutrients for other anaerobic microorganisms, thereby shaping the microbial ecosystem.↵↵Furthermore, the activity of Acidaminococcus fermentans in amino acid fermentation may play a role in maintaining gut health by contributing to the production of short-chain fatty acids, which are known to have beneficial effects on host metabolism and immune function. This highlights the potential significance of Acidaminococcus fermentans strain pGA-4 in both microbial ecology and health-related aspects of anaerobic environments." Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus fermentans negative Coccus anaerobic 905 FOWJ00000000.1 Bac0012054 Prevotella sp. tf2-5 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. tf2-5 1761889 FOWK00000000.1 Bac0012055 Halolactibacillus alkaliphilus strain CGMCC 1.6843 "Halolactibacillus alkaliphilus strain CGMCC 1.6843 is a Gram-positive, rod-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism and optimal growth temperature of 29.0°C. This strain is notable for its non-spore-forming nature, which distinguishes it from many other bacterial genera that employ sporulation as a survival strategy under adverse conditions. ↵↵As a member of the Halolactibacillus genus, this microbe is likely adapted to alkaline environments, leveraging its metabolic versatility to thrive in fluctuating oxygen levels. The facultative nature of its respiration indicates that H. alkaliphilus can grow in both the presence and absence of oxygen, which could facilitate its survival in diverse ecological niches, particularly in high-pH habitats where organic matter decomposition occurs. ↵↵The combination of its Gram-positive cell wall structure and rod shape may contribute to its resilience in challenging environments. These traits could also influence its interactions with other microorganisms, potentially impacting nutrient cycling and community dynamics within its ecological niche. The unique physiological adaptations of Halolactibacillus alkaliphilus strain CGMCC 1.6843 present intriguing opportunities for further research into its role in alkaline ecosystems and its potential applications in biotechnology, particularly in processes that involve alkaline conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halolactibacillus Halolactibacillus alkaliphilus Gram-positive rod non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 442899 FOWN00000000.1 Bac0012056 Geodermatophilus sp. DSM 44208 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus dictyosporus 1523247 FOWQ00000000.1 Bac0012057 Enterovibrio norvegicus DSM 15893 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Enterovibrio Enterovibrio norvegicus 1121869 FOWR00000000.1 Bac0012058 Saccharomonospora viridis strain ATCC 33517 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora viridis 1852 FOWS00000000.1 Bac0012059 Pseudomonas borbori strain DSM 17834 "Pseudomonas borbori strain DSM 17834 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This strain is non-spore-forming, indicating its reliance on other survival mechanisms in response to environmental stresses rather than sporulation. ↵↵As a member of the Pseudomonas genus, Pseudomonas borbori may exhibit metabolic versatility, allowing it to utilize a range of organic compounds as carbon sources. This metabolic flexibility is characteristic of many Pseudomonas species, which are often found in diverse habitats, including soil, water, and plant surfaces. The aerobic nature of this strain suggests a preference for environments rich in oxygen, which may influence its ecological niche and interactions with other microorganisms.↵↵The understanding of Pseudomonas borbori DSM 17834's traits contributes to the broader knowledge of Pseudomonas species, particularly in relation to their roles in nutrient cycling and degradation processes in the environment. The ability of this strain to thrive at a moderate temperature and its aerobic requirements underline its potential significance in biogeochemical processes, especially in temperate ecosystems where organic matter decomposition occurs." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas borbori Gram-negative rod aerobic 25 mesophilic non-spore-forming 289003 FOWX00000000.1 Bac0012060 Tranquillimonas alkanivorans strain DSM 19547 "Tranquillimonas alkanivorans strain DSM 19547 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This organism thrives optimally at a temperature of 45.0 °C, suggesting a preference for moderately thermophilic environments. ↵↵The Gram-negative nature of T. alkanivorans indicates a characteristic cell wall structure that includes an outer membrane, which may confer specific advantages in its habitat, such as resistance to certain antibiotics or environmental stressors. Its rod shape is typical of many bacteria and is often associated with motility and nutrient uptake efficiency, which could play a role in its ecological interactions.↵↵Given its aerobic requirement, T. alkanivorans likely participates in oxygen-dependent metabolic processes, potentially influencing the biogeochemical cycling of carbon and other elements within its ecosystem. This trait may also suggest its involvement in the degradation of aliphatic compounds, aligning with its species name ""alkanivorans,"" which implies an ability to utilize alkanes as a carbon source.↵↵The specific combination of its growth temperature and oxygen requirements highlights T. alkanivorans as a candidate for studying microbial adaptation to high-temperature environments and its potential role in bioremediation strategies, particularly in the degradation of hydrocarbons in thermophilic conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tranquillimonas Tranquillimonas alkanivorans Gram-negative rod non-motile aerobic 45 thermophilic non-spore-forming 441119 FOXA00000000.1 Bac0012061 Salibacterium halotolerans strain S7 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salibacterium Salibacterium halotolerans 1884432 FOXD00000000.1 Bac0012062 Oscillibacter sp. PC13 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Oscillibacter sp. PC13 1855299 FOXE00000000.1 Bac0012063 Pseudomonas toyotomiensis strain JCM 15604 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas toyotomiensis 554344 FOXK00000000.1 Bac0012064 Pseudomonas sagittaria strain JCM 18195 "Pseudomonas sagittaria strain JCM 18195 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This strain is part of the diverse Pseudomonas genus, which is known for its metabolic versatility and ability to adapt to various ecological niches. The Gram-negative nature of P. sagittaria indicates the presence of a thin peptidoglycan layer and an outer membrane, characteristic of this group, which may influence its interactions with other microorganisms and its environment.↵↵The aerobic requirement suggests that P. sagittaria is reliant on oxygen for its metabolic processes, potentially positioning it in environments rich in oxygen, such as soil and water systems where organic matter is decomposing. The optimal temperature of 29.0°C indicates that this strain is well-suited for growth in warm environments, which may correlate with specific ecological habitats, such as those found in tropical or subtropical regions.↵↵Understanding the physiological traits of Pseudomonas sagittaria strain JCM 18195 can inform potential applications in bioremediation or agriculture, where its metabolic capabilities may be harnessed to degrade pollutants or promote plant health. Its adaptation to aerobic conditions may also indicate a role in nutrient cycling, particularly in environments where oxygen levels fluctuate, thereby contributing to ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Geopseudomonas Geopseudomonas sagittaria Gram-negative rod aerobic 29 mesophilic 1135990 FOXM00000000.1 Bac0012065 Butyrivibrio proteoclasticus strain P18 "Butyrivibrio proteoclasticus strain P18 is a Gram-positive, rod-shaped bacterium that is strictly anaerobic and is typically found in host-associated environments. This microorganism plays a significant role in the fermentation of complex carbohydrates, contributing to the breakdown of proteins in anaerobic conditions. The ability of B. proteoclasticus to thrive in low-oxygen environments is critical for its function within the gastrointestinal tract of various hosts, where it participates in the degradation of dietary components.↵↵The anaerobic nature of this strain suggests a specialized metabolism that likely involves the utilization of fermentation pathways to produce short-chain fatty acids, notably butyrate, which is essential for various physiological processes in the host. Given its habitat and metabolic capabilities, B. proteoclasticus strain P18 may influence the microbial community structure within the host's gut, potentially affecting nutrient absorption and overall gut health. ↵↵Furthermore, its role in protein fermentation underscores its potential significance in the degradation of nitrogenous compounds, which may have implications for nitrogen cycling within the host's ecosystem. This suggests that B. proteoclasticus is not only integral to host metabolism but also plays a role in maintaining homeostasis within the microbial community. Understanding the dynamics of this strain could provide insights into microbial interactions and their impact on host health, particularly in relation to dietary influences and gut microbiome diversity." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio proteoclasticus Positive Rod No 1 1 Anaerobic Mesophilic HostAssociated 43305 FOXO00000000.1 Bac0012066 Parafilimonas terrae strain DSM 28286 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Parafilimonas Parafilimonas terrae 1465490 FOXQ00000000.1 Bac0012067 Psychrobacillus psychrotolerans strain DSM 11706 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Psychrobacillus Psychrobacillus psychrotolerans 126156 FOXU00000000.1 Bac0012068 Enterobacter sp. kpr-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. kpr-6 1761782 FOYH00000000.1 Bac0012069 Poseidonocella sedimentorum strain KMM 9023 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Poseidonocella Poseidonocella sedimentorum 871652 FOYI00000000.1 Bac0012070 Desulfotomaculum geothermicum strain DSM 3669 Bacillati Bacillota Clostridia Eubacteriales Desulfallaceae Desulfoscipio Desulfoscipio geothermicus 39060 FOYM00000000.1 Bac0012071 Halorubrum sodomense strain RD 26 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sodomense 35743 FOYN00000000.1 Bac0012072 Loktanella tamlensis strain DSM 26879 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Yoonia Yoonia tamlensis 390270 FOYP00000000.1 Bac0012073 Robiginitalea myxolifaciens strain DSM 21019 "Robiginitalea myxolifaciens strain DSM 21019 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0 °C. This organism is characterized by its non-spore-forming nature, which suggests a reliance on environmental stability for its survival, as it does not produce spores to withstand adverse conditions.↵↵The rod shape of R. myxolifaciens may confer advantages in nutrient uptake and motility within its habitat, potentially facilitating its interaction with various substrates. Given its aerobic requirement, it is likely to be found in environments rich in oxygen, which could include surface waters or soils that are well-aerated.↵↵The specific growth conditions and morphological traits of R. myxolifaciens indicate that it may play a role in the cycling of organic materials in its ecosystem. Understanding the physiological capabilities of this strain is essential for comprehending its potential applications in biotechnological processes or its interactions within microbial communities. Further exploration of its metabolic pathways and ecological roles could provide insights into its contributions to biogeochemical cycles, particularly in aerobic environments where it is adapted to thrive." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Robiginitalea Robiginitalea myxolifaciens Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 400055 FOYQ00000000.1 Bac0012074 Halogeometricum rufum strain CGMCC 1.7736 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogeometricum Halogeometricum rufum 553469 FOYT00000000.1 Bac0012075 Marinobacter daqiaonensis strain CGMCC 1.9167 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter daqiaonensis 650891 FOYW00000000.1 Bac0012076 Thioalkalimicrobium sp. ALE5 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira sp. ALE5 748650 FOYY00000000.1 Bac0012077 Pseudobutyrivibrio sp. NOR37 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio sp. NOR37 1798168 FOZB00000000.1 Bac0012078 [Clostridium] aminophilum strain F Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium [Clostridium] aminophilum rumen; rumen fluid 1526 FOZC00000000.1 Bac0012079 Dyella sp. OK004 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella sp. OK004 1855292 FOZI00000000.1 Bac0012080 Lutibacter maritimus strain DSM 24450 "Lutibacter maritimus strain DSM 24450 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This organism is notable for its adaptation to specific thermal and oxygen conditions, suggesting a potential niche in marine or coastal ecosystems where similar temperature and oxygen gradients are prevalent. ↵↵The Gram-negative classification of Lutibacter maritimus indicates a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural composition is significant for its resilience and interaction with its environment, potentially influencing its biochemical pathways and metabolic capabilities.↵↵Given its optimal growth temperature, Lutibacter maritimus strain DSM 24450 may play a role in biogeochemical processes at moderate temperatures, contributing to the cycling of nutrients in marine habitats. The aerobic nature of this strain implies that it utilizes oxygen for respiration, which could position it as a key player in the degradation of organic matter in oxygen-rich waters. Further exploration of its metabolic pathways may reveal insights into its ecological role and potential applications in biotechnology or environmental management." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lutibacter Lutibacter maritimus Gram-negative rod non-motile aerobic 29 mesophilic 593133 FOZP00000000.1 Bac0012081 Acinetobacter pakistanensis strain ANC 5076 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bohemicus 1435036 FOZU00000000.1 Bac0012082 Brevundimonas viscosa strain CGMCC 1.10683 "Brevundimonas viscosa strain CGMCC 1.10683 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This strain is part of the broader genus Brevundimonas, which is known for its diverse metabolic capabilities and adaptability to various environments. ↵↵Characterizing its morphology, the rod shape of Brevundimonas viscosa strain CGMCC 1.10683 is indicative of its Gram-negative cell wall structure, which typically features a thin peptidoglycan layer and an outer membrane composed of lipopolysaccharides. Such structural characteristics may confer certain advantages in terms of resilience against environmental stresses and influence its interactions with other microorganisms.↵↵The optimal growth temperature of 29.0°C suggests that this strain is well-suited for mesophilic environments, which may include soil, water, or various organic substrates where it could play a role in nutrient cycling. The aerobic requirement indicates that it relies on oxygen for respiration, further supporting its potential involvement in aerobic degradation processes.↵↵Overall, Brevundimonas viscosa strain CGMCC 1.10683 may serve as an important player in biogeochemical cycles, particularly in aerobic environments where organic matter decomposition occurs. Its metabolic versatility and structural adaptations could position it as a beneficial organism in bioremediation strategies or as a model organism for studying microbial ecology in diverse habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas viscosa Gram-negative rod aerobic 29 mesophilic 871741 FOZV00000000.1 Bac0012083 Yangia pacifica strain DSM 26894 "Yangia pacifica strain DSM 26894 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 37.0°C. This strain is part of the diverse microbial community associated with various environments, which suggests potential adaptability to different ecological niches, although specific ecological roles have not been elucidated.↵↵The Gram-negative classification indicates that Y. pacifica possesses a characteristic outer membrane structure, which may influence its interactions with other microorganisms and its resistance to certain environmental stressors. The rod shape of this bacterium is typical among many aerobic organisms, potentially facilitating efficient nutrient uptake and motility within its habitat.↵↵As a non-spore-forming organism, Y. pacifica likely relies on active growth and reproduction rather than sporulation for survival, which may limit its resilience under extreme conditions typically employed by spore-forming bacteria. The preference for an aerobic environment suggests that Y. pacifica is adapted to utilizing oxygen for its metabolic processes, which can influence its distribution in environments where oxygen is readily available.↵↵Overall, the traits of Yangia pacifica strain DSM 26894 suggest a specialized role in aerobic environments, potentially contributing to nutrient cycling and ecosystem dynamics within its native habitat, although further research is necessary to fully understand its ecological implications." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Alloyangia Alloyangia pacifica Gram-negative rod aerobic 37 mesophilic non-spore-forming 311180 FOZW00000000.1 Bac0012084 Methylobacterium sp. yr668 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. yr668 1761801 FOZY00000000.1 Bac0012085 Sphingobacterium wenxiniae strain DSM 22789 "Sphingobacterium wenxiniae strain DSM 22789 is a Gram-negative, non-spore-forming rod that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This bacterium belongs to the genus Sphingobacterium, which is characterized by its ability to degrade a variety of organic compounds, suggesting a potential role in environmental bioremediation processes. The Gram-negative cell wall structure typically imparts resilience to harsh environments, which may contribute to its ecological versatility.↵↵Sphingobacterium species are often found in diverse habitats, including soil and aquatic environments, where they can participate in nutrient cycling. The aerobic nature of S. wenxiniae indicates its reliance on oxygen for metabolic processes, which may influence its distribution in oxygen-rich microenvironments. The optimal growth temperature of 29.0°C aligns with mesophilic organisms and suggests that this strain may be well-suited for survival in temperate climates.↵↵Given these traits, Sphingobacterium wenxiniae strain DSM 22789 could play a significant role in the decomposition of organic materials, thus contributing to soil health and ecosystem functioning. Further research may elucidate specific metabolic pathways and interactions with other microbial communities in its natural habitats, enhancing our understanding of its ecological contributions." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium wenxiniae Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 683125 FOZZ00000000.1 Bac0012086 Streptomyces harbinensis strain CGMCC 4.7047 "Streptomyces harbinensis strain CGMCC 4.7047 is a Gram-positive, spore-forming bacterium characterized by its aerobic metabolism and optimal growth temperature of 29.0°C. This actinobacterium belongs to the genus Streptomyces, which is well-known for its role in natural product biosynthesis, particularly antibiotics and other bioactive compounds. The Gram-positive nature of S. harbinensis suggests a thick peptidoglycan layer in its cell wall, which is typical of this genus and may contribute to its resilience in various environmental conditions.↵↵The ability to form spores allows S. harbinensis to persist in adverse environments by entering a dormant state, which can be essential for survival during periods of nutrient scarcity or unfavorable conditions. The optimal growth temperature of 29.0°C indicates that this strain thrives in moderately warm environments, which is consistent with the ecological niches typically occupied by Streptomyces species, often found in soil and decaying organic matter.↵↵Understanding the traits of S. harbinensis can provide valuable insights into the metabolic capabilities of this bacterium, particularly its potential for secondary metabolite production. Given its aerobic requirement, this strain may play a significant role in the degradation of organic materials in oxygen-rich environments, contributing to nutrient cycling and soil health. Further investigation into its metabolic pathways could reveal novel compounds with applications in medicine or agriculture, highlighting the ecological importance of Streptomyces species in their respective habitats." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces harbinensis Gram-positive non-motile aerobic 29 mesophilic spore-forming 1176198 FPAB00000000.1 Bac0012087 Paenibacillus sp. BC26 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. BC26 1881032 FPAD00000000.1 Bac0012088 Bacillus sp. 103mf Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 103mf 1761751 FPAF00000000.1 Bac0012089 Lishizhenia tianjinensis strain CGMCC 1.7005 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Lishizhenia Lishizhenia tianjinensis 477690 FPAS00000000.1 Bac0012090 Selenomonas ruminantium strain GACV-9 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. GACV-9 3158782 FPAX00000000.1 Bac0012091 Pseudoalteromonas lipolytica strain CGMCC 1.8499 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas lipolytica 570156 FPAZ00000000.1 Bac0012092 Geodermatophilus amargosae strain DSM 46136 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus amargosae aerobic 1296565 FPBA00000000.1 Bac0012093 Algoriphagus locisalis strain DSM 23445 "Algoriphagus locisalis strain DSM 23445 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and optimal growth temperature of 29.0°C. This strain is part of the genus Algoriphagus, which is known for its preference for marine environments, suggesting a potential adaptation to specific ecological niches. ↵↵Being Gram-negative, A. locisalis exhibits a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, a feature that may influence its interactions in aquatic ecosystems. The aerobic nature of this bacterium indicates that it relies on oxygen for its metabolic processes, which could play a significant role in biogeochemical cycles within its habitat.↵↵The optimal growth temperature of 29.0°C implies an adaptation to moderately cool environments, which may be typical of certain marine habitats. This temperature preference also raises questions about its potential role in the microbial community dynamics at varying thermal conditions, particularly in the context of climate change where temperature fluctuations are increasingly common.↵↵Overall, the traits of Algoriphagus locisalis strain DSM 23445 suggest it may occupy a specific ecological niche within marine ecosystems, contributing to the degradation of organic matter and influencing nutrient cycling processes. Further studies could elucidate its functional roles in these environments, enhancing our understanding of microbial life in marine systems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus locisalis Gram-negative rod non-motile aerobic 29 mesophilic 305507 FPBF00000000.1 Bac0012094 Mesorhizobium sp. YR577 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. YR577 1884373 FPBI00000000.1 Bac0012095 Nitrosomonas eutropha strain Nm24 "Nitrosomonas eutropha strain Nm24 is a Gram-negative, aerobic bacterium that exhibits a distinctive cell arrangement, forming both chains and singles. This strain is classified as a chemolithotrophic autotroph, utilizing inorganic compounds for energy and carbon, which positions it as a significant player in nitrogen cycling. ↵↵N. eutropha strain Nm24 thrives in diverse habitats, suggesting its adaptability to varying environmental conditions. Its chemolithotrophic metabolism allows it to oxidize ammonia to nitrite, a crucial process in the nitrogen cycle that contributes to soil fertility and water quality. The autotrophic nature of this strain indicates its reliance on inorganic carbon sources, which may enhance its survival in environments where organic carbon is limited.↵↵The ability of N. eutropha strain Nm24 to form chains may provide advantages in nutrient acquisition or biofilm formation, potentially influencing its interactions with other microbial communities. Understanding this strain's metabolic capabilities and ecological roles can offer insights into its potential applications in bioremediation and sustainable agriculture practices, particularly in systems where nitrogen management is critical." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas eutropha Negative Yes 1 2 Aerobe Chemolithotroph - Autotroph Mesophilic Multiple Free living Chains - Singles 916 FPBL00000000.1 Bac0012096 Polaromonas sp. YR568 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. YR568 1855301 FPBM00000000.1 Bac0012097 Porphyromonadaceae bacterium KHP3R9 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonadaceae bacterium KHP3R9 1855398 FPBR00000000.1 Bac0012098 Alicyclobacillus macrosporangiidus strain DSM 17980 "Alicyclobacillus macrosporangiidus strain DSM 17980 is a Gram-positive, rod-shaped bacterium that is notable for its ability to form spores. This thermophilic organism thrives at an optimal temperature of 45.0°C and exhibits aerobic metabolic characteristics, requiring oxygen for growth. ↵↵As a member of the genus Alicyclobacillus, this strain is likely adapted to high-temperature environments, which may include specific niches such as hot springs or thermally altered soils. The sporulation capability of strain DSM 17980 suggests a resilience to unfavorable conditions, enabling it to survive in environments that may experience fluctuations in temperature or nutrient availability.↵↵The combination of thermophilic and aerobic traits indicates that A. macrosporangiidus may play a role in biogeochemical cycles within its ecological niche, particularly in the breakdown of organic matter at elevated temperatures. This unique adaptation not only contributes to its survival but may also influence microbial community dynamics and nutrient cycling in high-temperature ecosystems where it is found. The understanding of this strain could provide insights into the ecological roles of thermophilic bacteria and their potential applications in biotechnology and environmental management." Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Paenalicyclobacillus Paenalicyclobacillus macrosporangiidus Gram-positive rod aerobic 45 thermophilic spore-forming 392015 FPBV00000000.1 Bac0012099 Acidovorax caeni strain R-24608 "Acidovorax caeni strain R-24608 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits facultative aerobic and anaerobic respiration capabilities. This adaptability allows A. caeni strain R-24608 to thrive in varying environmental oxygen levels, potentially contributing to its versatility in diverse habitats. ↵↵As a member of the Acidovorax genus, this strain is likely involved in the degradation of organic compounds, particularly in environments where organic matter is abundant. The Gram-negative cell wall structure of A. caeni strain R-24608 is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interaction with the surrounding environment and in the modulation of its metabolic processes.↵↵The facultative nature of A. caeni strain R-24608 suggests that it can switch between aerobic respiration when oxygen is available and anaerobic processes when it is not, thereby optimizing its energy production under fluctuating environmental conditions. This metabolic flexibility may be advantageous in environments such as soil or sediment, where oxygen levels can vary significantly.↵↵Overall, the ability of A. caeni strain R-24608 to adapt to different oxygen conditions positions it as a potentially important player in biogeochemical cycles, particularly in the degradation of organic pollutants in anaerobic and microaerophilic environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paenacidovorax Paenacidovorax caeni Gram-negative rod facultative aerobe/anaerobe non-spore-forming 343013 FPBX00000000.1 Bac0012100 Butyrivibrio sp. M55 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. M55 1855323 FPCD00000000.1 Bac0012101 Pseudomonas sp. OV546 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. OV546 1881063 FPCE00000000.1 Bac0012102 Micrococcus terreus strain CGMCC 1.7054 "Micrococcus terreus strain CGMCC 1.7054 is a Gram-positive, spherical bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 32.0°C. This strain is characterized by its ability to survive in oxygen-rich environments, making it a member of the aerobic microbial community. ↵↵As a representative of the Micrococcus genus, M. terreus strain CGMCC 1.7054 contributes to various ecological niches, particularly within soil and on human skin, where it plays a role in the microbial balance. The spherical morphology of this strain, typical of many Micrococcus species, may facilitate its survival and colonization in diverse habitats. ↵↵The optimal growth temperature of 32.0°C suggests that this strain may be well-adapted to moderately warm environments, which may include human-associated habitats or warm terrestrial ecosystems. This characteristic could indicate a potential role in biogeochemical cycles or interactions with other microbial populations in its native environments.↵↵Understanding the specific traits of M. terreus strain CGMCC 1.7054 not only aids in identifying its ecological role but also emphasizes the adaptability of Gram-positive cocci in various environmental conditions. Further studies could investigate its interactions with other microorganisms and its potential applications in biotechnology or environmental management." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus terreus Gram-positive sphere non-motile aerobic 32 mesophilic 574650 FPCG00000000.1 Bac0012103 Hyphomicrobium facile strain DSM 1565 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium facile 51670 FPCH00000000.1 Bac0012104 Ruminococcus flavefaciens strain YL228 "Ruminococcus flavefaciens strain YL228 is a Gram-positive bacterium predominantly found in the gut, specifically within the rumen of herbivorous mammals. This microbe is characterized by its role in the fermentation of plant materials, contributing to the complex microbial ecosystem of the rumen, where it aids in the breakdown of fibrous carbohydrates. The presence of R. flavefaciens is essential for optimizing nutrient absorption in ruminants, as it helps facilitate the digestion of cellulose and other polysaccharides that are otherwise challenging for the host to metabolize.↵↵Strain YL228 may exhibit specific metabolic capabilities that enhance its efficiency in fiber degradation, although precise biochemical pathways have not been detailed in the provided data. Its adaptation to the rumen environment suggests a symbiotic relationship with its host, contributing to the overall health and productivity of ruminants. ↵↵The study of Ruminococcus flavefaciens strain YL228 offers insights into the intricate interactions between microbial communities and their hosts, highlighting the importance of gut microbiota in digestive processes. Understanding the mechanisms underlying its function could provide valuable information for improving livestock management and enhancing feed efficiency through microbial modulation." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus flavefaciens positive gut; rumen 1265 FPIP00000000.1 Bac0012105 Nitrosovibrio sp. Nv17 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosovibrio Nitrosovibrio sp. Nv17 1855339 FPIQ00000000.1 Bac0012106 Prevotellaceae bacterium HUN156 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotellaceae bacterium HUN156 1520830 FPIT00000000.1 Bac0012107 Cellulophaga fucicola strain DSM 24786 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga fucicola 76595 FPIY00000000.1 Bac0012108 Chitinophaga sancti strain DSM 784 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga sancti 1004 FPIZ00000000.1 Bac0012109 Pseudomonas sp. NFACC04-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC04-2 1566242 FPJC00000000.1 Bac0012110 Sinomicrobium oceani strain CGMCC 1.12145 "Sinomicrobium oceani strain CGMCC 1.12145 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives at an optimal growth temperature of 32.0°C, indicating its potential adaptation to moderate thermal environments. The Gram-negative classification suggests a complex cell envelope structure, which may contribute to its interactions with the surrounding environment, including the capacity to form biofilms or engage in nutrient cycling.↵↵The aerobic nature of Sinomicrobium oceani strain CGMCC 1.12145 implies a reliance on oxygen for metabolic processes, which could influence its ecological role in oxygen-rich habitats, such as marine environments. Given its non-spore-forming characteristic, this strain may be particularly sensitive to environmental stresses that would typically induce sporulation in other microbial species. ↵↵Understanding the physiological traits of this bacterium can provide insights into its potential applications in biotechnological processes or its role in marine microbiomes. The specific adaptation to an optimal temperature of 32.0°C may suggest that this strain plays a significant role in nutrient utilization and organic matter decomposition in coastal waters, contributing to the overall health of marine ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Sinomicrobium Sinomicrobium oceani Gram-negative rod aerobic 32 mesophilic non-spore-forming 1150368 FPJE00000000.1 Bac0012111 Marinospirillum alkaliphilum DSM 21637 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinospirillum Marinospirillum alkaliphilum 1122209 FPJW00000000.1 Bac0012112 Pseudomonas sp. NFACC36 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. NFACC36 1566197 FPKB00000000.1 Bac0012113 Paracoccus pantotrophus strain DSM 1403 "Paracoccus pantotrophus strain DSM 1403 is a cocci-shaped bacterium known for its versatile metabolic capabilities. This strain belongs to the genus Paracoccus, which is recognized for its ability to utilize a wide range of substrates, contributing to its ecological adaptability. ↵↵The cocci morphology of Paracoccus pantotrophus strain DSM 1403 suggests a potential for forming aggregates, which may facilitate cooperative interactions in nutrient-poor environments. This shape is characteristic of various members of the Paracoccus genus, which are primarily found in soil and water habitats. ↵↵In addition to its distinctive morphology, Paracoccus pantotrophus is noted for its metabolic versatility, allowing it to thrive under various environmental conditions. This adaptability may play a significant role in biogeochemical cycles, particularly in nitrogen and carbon cycling. The ability to utilize diverse energy sources enables this strain to occupy various ecological niches, reflecting its potential importance in environmental microbiology.↵↵Overall, the cocci shape of Paracoccus pantotrophus strain DSM 1403, combined with its metabolic flexibility, underscores its role in ecological processes, particularly in its ability to adapt and contribute to microbial communities in changing environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus pantotrophus Cocci 82367 FPKI00000000.1 Bac0012114 Chryseobacterium limigenitum strain SUR2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium limigenitum 1612149 FPKW00000000.1 Bac0012115 Chlamydia abortus strain 162STDY5437304 "Chlamydia abortus strain 162STDY5437304 is a Gram-negative, rod-shaped bacterium that thrives optimally at 37.0°C. This strain is host-associated, indicating its reliance on a specific host environment for growth and survival. While its precise ecological niche and interactions within the host are not fully characterized, its association with host organisms suggests potential implications for understanding host-pathogen relationships within the Chlamydia genus. ↵↵The optimal growth temperature of 37.0°C aligns with the body temperature of many mammals, hinting at its adaptation to survive within a warm-blooded host. This adaptation may reflect evolutionary pressures that favor persistence and transmission within specific animal populations. Overall, the insights provided by the traits of Chlamydia abortus strain 162STDY5437304 contribute to the broader understanding of host-associated microorganisms and their adaptations to specific thermal environments." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia abortus Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 83555 FPLR00000000.1 Bac0012116 Chlamydia abortus strain C20_98 "Chlamydia abortus strain C20_98 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at 37.0°C and is primarily associated with host organisms. As a member of the Chlamydiales order, this strain is typically found within specific host environments, reflecting its adaptation to life in a host-associated habitat. ↵↵The rod shape of Chlamydia abortus strain C20_98 is characteristic of its genus, which is known for its unique developmental cycle involving both elementary bodies and reticulate bodies. These forms facilitate its intracellular lifestyle, allowing the bacterium to persist within host cells and evade immune responses. The preference for a temperature of 37.0°C suggests that this strain is well-adapted to the physiological conditions of warm-blooded hosts, which may include various mammals.↵↵The host-associated habitat of Chlamydia abortus strain C20_98 implies a reliance on specific interactions with host immune systems and cellular environments, potentially influencing its survival and replication strategies. Understanding the ecological niche and host interactions of this strain may provide insights into the broader dynamics of host-pathogen relationships within Chlamydia species. This strain serves as an important subject for further research, particularly in elucidating the mechanisms of host adaptation and the implications for microbial ecology within its specific environment." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia abortus Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 83555 FPMT00000000.1 Bac0012117 Mycobacterium tuberculosis strain 2926STDY5723586 "Mycobacterium tuberculosis strain 2926STDY5723586 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which is consistent with its habitat as a host-associated microbe. Optimal growth for this strain occurs at 37.0°C, reflecting its adaptation to human physiological conditions.↵↵M. tuberculosis is known for its aerobic metabolic requirements, necessitating oxygen for growth. This trait aligns with its lifestyle as an intracellular pathogen, wherein it can exploit aerobic conditions within host tissues. The single-cell arrangement may facilitate its survival in various niches within the host, potentially allowing for enhanced evasion of the host immune response.↵↵Understanding the specific traits of Mycobacterium tuberculosis strain 2926STDY5723586 contributes to our broader comprehension of this pathogen's biology and its adaptation strategies within the human host. The bacterium's reliance on aerobic conditions and its specific nutrient requirements may influence its interactions with host tissues and immune cells, further informing potential therapeutic approaches and control measures against tuberculosis." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1773 FPPU00000000.1 Bac0012118 bacterium endosymbiont of Bathymodiolus sp. 5 South bacterium endosymbiont of Bathymodiolus sp. 5 South 1181670 FQTR00000000.1 Bac0012119 Bathymodiolus brooksi thiotrophic gill symbiont Pseudomonadati Pseudomonadota Gammaproteobacteria Bathymodiolus brooksi thiotrophic gill symbiont FQTS00000000.1 Bac0012120 Alkalibacter saccharofermentans DSM 14828 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Alkalibacter Alkalibacter saccharofermentans anaerobic 1120975 FQTU00000000.1 Bac0012121 Psychroflexus salarius strain DSM 25661 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Psychroflexus Psychroflexus salarius 1155689 FQTW00000000.1 Bac0012122 Chryseobacterium sp. OV279 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. OV279 1500285 FQUD00000000.1 Bac0012123 Schwartzia succinivorans DSM 10502 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Schwartzia Schwartzia succinivorans anaerobic 1123243 FQUG00000000.1 Bac0012124 Cnuella takakiae strain DSM 26897 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Cnuella Cnuella takakiae 1302690 FQUO00000000.1 Bac0012125 Pedobacter caeni strain DSM 16990 "Pedobacter caeni strain DSM 16990 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. As a member of the genus Pedobacter, it contributes to the diverse microbial communities found in various ecosystems, particularly those associated with soil and water environments.↵↵The aerobic requirement of Pedobacter caeni suggests that it plays a role in processes that involve the oxidation of organic compounds, potentially contributing to nutrient cycling in its habitat. Its ability to thrive at a specific temperature range may also indicate its adaptation to particular environmental niches, which could be key to understanding its functional roles in microbial communities.↵↵The non-spore-forming characteristic of this strain implies that it may rely on other survival strategies in adverse conditions, such as forming biofilms or utilizing metabolic plasticity to respond to changes in nutrient availability or other environmental stresses. This adaptability may enhance its ecological resilience, allowing it to maintain its presence in fluctuating habitats. Further studies could reveal additional insights into its interactions with other microorganisms and its contributions to biogeochemical processes in its native environments." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter caeni Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 288992 FQUQ00000000.1 Bac0012126 Thermoanaerobacter uzonensis DSM 18761 "Thermoanaerobacter uzonensis DSM 18761 is a spore-forming, rod-shaped bacterium that exhibits Gram-positive characteristics. This microorganism thrives optimally at a temperature of 45.0°C and is strictly anaerobic, indicating that it requires an oxygen-free environment to grow and carry out its metabolic processes.↵↵The ability to form spores suggests that T. uzonensis can withstand unfavorable environmental conditions, enhancing its survival and persistence in various habitats. The optimal growth temperature of 45.0°C points to its potential role in thermophilic environments, such as hot springs or geothermal areas, where it may contribute to the biogeochemical cycling of organic matter.↵↵Understanding the specific conditions under which T. uzonensis thrives can provide insights into its metabolic capabilities and ecological roles within its native habitats. For instance, the anaerobic nature of this bacterium may suggest involvement in processes such as fermentation, which can lead to the production of various metabolic byproducts. These traits position T. uzonensis as a candidate for further research into its applications in biotechnology, particularly in processes that require thermophilic and anaerobic conditions." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter uzonensis Gram-negative / Gram-positive rod anaerobic 45 thermophilic spore-forming 1123369 FQUR00000000.1 Bac0012127 Aliifodinibius roseus strain DSM 21986 "Aliifodinibius roseus strain DSM 21986 is a Gram-negative, non-spore-forming rod-shaped bacterium characterized by its facultative anaerobic metabolism and optimal growth at 29.0°C. This microbe's Gram-negative nature suggests a complex cell wall structure, likely contributing to its adaptability in varying environmental conditions. The rod shape is a common morphological trait among many bacteria, which may influence its motility and surface interactions.↵↵As a facultative aerobe/anaerobe, A. roseus can thrive in both oxygen-rich and low-oxygen environments, allowing it to inhabit a variety of ecological niches. This metabolic flexibility may play a crucial role in its survival and competitiveness in diverse habitats, potentially including environments where oxygen availability fluctuates. ↵↵The optimal growth temperature of 29.0°C indicates that A. roseus is likely adapted to mesophilic conditions, which are typical of many terrestrial and aquatic ecosystems. This adaptation may also suggest the organism's ecological role in nutrient cycling or organic matter decomposition, although specific ecological functions remain to be elucidated. Further research into the metabolic pathways and interactions of A. roseus could provide valuable insights into its ecological significance and potential applications in biotechnology or environmental management." Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius roseus Gram-negative rod non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 1194090 FQUS00000000.1 Bac0012128 Desulfotomaculum australicum DSM 11792 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulfofundulus Desulfofundulus australicus 1566 FQUW00000000.1 Bac0012129 Arenibacter palladensis strain DSM 17539 "Arenibacter palladensis strain DSM 17539 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements and non-spore-forming nature. This organism exhibits optimal growth at a temperature of 25°C, indicating a potential preference for moderate environmental conditions. As a member of the microbial community, A. palladensis may play a role in nutrient cycling within its habitat, particularly in environments where aerobic processes are prevalent. Its inability to form spores suggests that it may rely on moisture and favorable conditions for survival and proliferation, which could influence its ecological distribution and interactions with other microorganisms. Overall, the traits of Arenibacter palladensis strain DSM 17539 highlight its adaptation to specific ecological niches, where it may contribute to the dynamics of microbial communities in aerobic environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Arenibacter Arenibacter palladensis Gram-negative rod motile aerobic 25 mesophilic non-spore-forming 237373 FQUX00000000.1 Bac0012130 Lampropedia hyalina DSM 16112 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Lampropedia Lampropedia hyalina aerobic 1122156 FQUZ00000000.1 Bac0012131 Microbulbifer donghaiensis strain CGMCC 1.7063 "Microbulbifer donghaiensis strain CGMCC 1.7063 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth temperature of 37.0°C. This strain belongs to the genus Microbulbifer, which is known for its diverse metabolic capabilities and adaptability to various environments. The rod morphology of M. donghaiensis indicates a typical bacterial structure that is often associated with motility and nutrient absorption strategies.↵↵As an aerobic organism, M. donghaiensis relies on oxygen for its metabolic processes, suggesting that it may thrive in oxygen-rich environments. This trait could imply a role in biogeochemical cycles, particularly in aerobic decomposition or nutrient cycling in marine or freshwater ecosystems, given the typical habitats of Microbulbifer species. ↵↵Understanding the physiological traits of M. donghaiensis can provide insights into its potential applications in biotechnology, such as bioremediation or the production of bioactive compounds. The strain's growth at 37.0°C also suggests that it may have relevance for studies involving temperature-sensitive processes, particularly in relation to human-associated environments or industry. Further research into the metabolic pathways and ecological interactions of M. donghaiensis could reveal additional functions within microbial communities and contribute to our understanding of microbial ecology in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer donghaiensis Gram-negative rod non-motile aerobic 37 mesophilic 494016 FQVA00000000.1 Bac0012132 Chryseobacterium vrystaatense strain YR203 "Chryseobacterium vrystaatense strain YR203 is a Gram-negative bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 16.0°C. This strain belongs to the genus Chryseobacterium, which is known for its ecological versatility and ability to thrive in various environments. The Gram-negative nature of C. vrystaatense indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that is characteristic of many bacteria in the phylum Bacteroidetes.↵↵Given its aerobic requirement, strain YR203 relies on oxygen for its energy production, which may influence its distribution in environments where oxygen is readily available. The optimal growth temperature of 16.0°C suggests that this strain may be well-adapted to cooler habitats, potentially including soil or aquatic environments in temperate regions.↵↵The physiological traits of Chryseobacterium vrystaatense strain YR203 may contribute to its role in biogeochemical cycles, particularly in the breakdown of organic matter in cooler ecosystems. This adaptability to lower temperatures and aerobic conditions hints at a potential ecological niche where it can participate in the decomposition process, thereby influencing nutrient cycling and microbial community dynamics in its environment. Further research could elucidate its interactions with other microbial species and its contributions to soil health or aquatic ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium vrystaatense Gram-negative non-motile aerobic 16 psychrotolerant 307480 FQVE00000000.1 Bac0012133 Marinomonas polaris DSM 16579 "Marinomonas polaris DSM 16579 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 29.0°C. This marine microbe is part of the diverse microbial communities found in oceanic environments, where it likely plays a role in nutrient cycling and interactions with other marine microorganisms.↵↵The Gram-negative cell wall structure of M. polaris contributes to its unique physiological characteristics, including its response to environmental stressors and its interactions with organic matter in the marine ecosystem. Being non-spore-forming, M. polaris relies on its active metabolism for survival and proliferation rather than forming dormant spores to withstand unfavorable conditions.↵↵Understanding the optimal growth temperature of 29.0°C suggests that M. polaris is adapted to moderately warm marine habitats, which may influence its distribution and ecological functions in the ocean. Its aerobic nature indicates that it requires oxygen for growth, positioning it within microbial niches where oxygen is available, such as surface waters and oxygen-rich sediments.↵↵The presence of Marinomonas polaris in marine ecosystems highlights the importance of such bacteria in maintaining the balance of microbial communities and their potential contributions to biogeochemical cycles, particularly in nutrient-rich environments. Future studies could further elucidate its ecological roles and interactions within marine microbial assemblages." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas polaris Gram-negative rod aerobic 29 mesophilic non-spore-forming 1122206 FQVF00000000.1 Bac0012134 Caldanaerobius fijiensis DSM 17918 "Caldanaerobius fijiensis DSM 17918 is a Gram-negative, spore-forming bacterium characterized by its rod shape and anaerobic metabolism, thriving optimally at a temperature of 45.0°C. This organism demonstrates a remarkable ability to survive in environments devoid of oxygen, reflecting its adaptation to anaerobic conditions. The ability to form spores suggests a strategy for resilience, allowing it to withstand unfavorable conditions and potentially contributing to its ecological success in specific niches. ↵↵Caldanaerobius fijiensis may play a significant role in anaerobic biogeochemical processes, particularly in the decomposition of organic matter in hot, anaerobic environments, where its metabolic activities could facilitate nutrient cycling. This adaptability not only underscores the organism's ecological importance but also highlights the necessity for further research into its potential applications in biotechnology, particularly in areas such as bioenergy production and waste treatment." Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Caldanaerobius Caldanaerobius fijiensis Gram-negative rod anaerobic 45 thermophilic spore-forming 1121256 FQVH00000000.1 Bac0012135 Streptoalloteichus hindustanus strain DSM 44523 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Streptoalloteichus Streptoalloteichus hindustanus 29 mesophilic spore-forming 2017 FQVN00000000.1 Bac0012136 Chryseobacterium takakiae strain DSM 26898 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium takakiae 1302685 FQVO00000000.1 Bac0012137 Flavobacterium fontis strain DSM 25660 "Flavobacterium fontis strain DSM 25660 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This organism is part of the diverse genus Flavobacterium, which is known for its role in the degradation of organic matter in various environments. ↵↵The rod shape of F. fontis suggests a morphology that may contribute to its adaptability in aquatic habitats, where it may be involved in the nutrient cycling processes. The Gram-negative cell wall structure is indicative of a complex outer membrane, which can provide the bacterium with certain advantages in terms of environmental resilience and interaction with other microbial communities. ↵↵Given its specific temperature preference, F. fontis strain DSM 25660 may be particularly suited for life in temperate freshwater ecosystems, where temperatures around 25.0°C are common during warmer months. The aerobic nature of this strain further suggests that it plays a significant role in the oxygen-rich environments typical of surface waters, potentially influencing the dynamics of microbial communities in these habitats.↵↵The presence of Flavobacterium species in aquatic ecosystems is often associated with the decomposition of organic materials, highlighting their ecological role in nutrient recycling and the maintenance of ecosystem health. Understanding the traits of F. fontis can provide insight into its potential contributions to biogeochemical cycles, particularly in freshwater environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium fontis Gram-negative rod non-motile aerobic 25 mesophilic 1124188 FQVQ00000000.1 Bac0012138 Tenacibaculum mesophilum strain DSM 13764 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum mesophilum 104268 FQVV00000000.1 Bac0012139 Bittarella massiliensis strain DSM 4029 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Bittarella (ex Durand et al. 2017) Bittarella massiliensis (ex Durand et al. 2017) 1720313 FQVY00000000.1 Bac0012140 Fibrobacter sp. UWB8 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB8 1896207 FQVZ00000000.1 Bac0012141 Flavobacterium defluvii strain DSM 17963 "Flavobacterium defluvii strain DSM 17963 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This strain belongs to the genus Flavobacterium, which is characterized by its diverse metabolic capabilities and ecological roles in various environments. ↵↵As a member of the Flavobacteriaceae family, F. defluvii is likely to be involved in the degradation of organic materials, contributing to nutrient cycling within its environment. The Gram-negative nature of this bacterium indicates the presence of a thin peptidoglycan layer and an outer membrane, which can influence its interactions with other microorganisms and its resilience to certain environmental stresses.↵↵Given its optimal growth temperature of 29.0°C, F. defluvii may be well-suited for environments such as freshwater ecosystems, where temperature fluctuations can occur but generally remain within moderate ranges. This adaptability could enable the strain to play a significant role in the microbiota of aquatic habitats, where it may participate in the breakdown of complex organic compounds.↵↵Understanding the metabolic pathways and ecological functions of Flavobacterium defluvii strain DSM 17963 could provide insights into its contributions to biogeochemical cycles, particularly in freshwater environments, where microbial communities are essential for maintaining ecosystem health and stability." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium defluvii Gram-negative rod motile 29 mesophilic non-spore-forming 370979 FQWC00000000.1 Bac0012142 Aestuariibacter aggregatus strain CGMCC 1.8995 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Marisediminitalea Marisediminitalea aggregata 634436 FQWD00000000.1 Bac0012143 Spongiibacterium flavum strain DSM 22638 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas flava 570519 FQWL00000000.1 Bac0012144 Thalassobius maritimus strain DSM 28223 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cognatishimia Cognatishimia maritima 870908 FQWM00000000.1 Bac0012145 Flavobacterium granuli strain DSM 19729 "Flavobacterium granuli strain DSM 19729 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and reproduction. ↵↵As a member of the Flavobacterium genus, this organism is likely involved in the decomposition processes within its ecosystem. While the specific ecological roles of F. granuli strain DSM 19729 have not been extensively detailed, the general characteristics of Flavobacterium species suggest that it may contribute to organic matter breakdown and nutrient cycling. Its Gram-negative cell wall structure, featuring a thin peptidoglycan layer and an outer membrane, may also confer certain advantages in adapting to its aerobic habitat. ↵↵The preference for an optimal temperature of 29.0°C indicates that F. granuli strain DSM 19729 may be well-suited to temperate environments, potentially influencing microbial community dynamics in soil or aquatic habitats where such conditions prevail. This adaptability may position the strain as an important player in biogeochemical cycles, particularly in environments rich in organic substrates. Further studies could elucidate the specific metabolic capabilities and ecological interactions of this strain within its natural habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium granuli Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 280093 FQWO00000000.1 Bac0012146 Fibrobacter sp. UWH9 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWH9 1896213 FQWP00000000.1 Bac0012147 Fibrobacter sp. UWCM Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWCM 1896208 FQWR00000000.1 Bac0012148 Massilia sp. CF038 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. CF038 1881045 FQWU00000000.1 Bac0012149 Flavobacterium sp. CF108 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. CF108 1882758 FQWW00000000.1 Bac0012150 Thermosyntropha lipolytica DSM 11003 Bacillati Bacillota Clostridia Eubacteriales Syntrophomonadaceae Thermosyntropha Thermosyntropha lipolytica anaerobic 1123382 FQWY00000000.1 Bac0012151 Marivita hallyeonensis strain DSM 29431 "Marivita hallyeonensis strain DSM 29431 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments at an optimal temperature of 29.0 °C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth rather than sporulation for survival and reproduction. ↵↵As a member of the genus Marivita, this microbe is likely to inhabit marine environments, aligning with the typical ecological niches occupied by its relatives. The aerobic requirement indicates that M. hallyeonensis may play a role in biogeochemical cycles, particularly involving oxygen and organic matter decomposition in its habitat. ↵↵The specific temperature preference of 29.0 °C suggests that M. hallyeonensis is adapted to moderately warm aquatic environments, which could influence its metabolic activities and interactions with other microbial communities. Overall, the ecological role of this strain may contribute to the dynamics of marine ecosystems, particularly in nutrient cycling and the maintenance of microbial diversity." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Marivita Marivita hallyeonensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 996342 FQXC00000000.1 Bac0012152 Candidimonas bauzanensis strain CGMCC 1.10190 "Candidimonas bauzanensis strain CGMCC 1.10190 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This strain demonstrates optimal growth at a temperature of 29.0 °C, which suggests a preference for mesophilic conditions. ↵↵The Gram-negative nature of C. bauzanensis indicates the presence of an outer membrane containing lipopolysaccharides, a characteristic that may influence its interactions within microbial communities and its responses to environmental stressors. The rod shape of this bacterium is indicative of its potential motility and adaptability, which may play a role in its ecological niches.↵↵Given its metabolic versatility, C. bauzanensis strain CGMCC 1.10190 may occupy unique ecological roles in various habitats where oxygen availability fluctuates, such as in waterlogged soils or sediments. This adaptability to different oxygen levels could enable it to participate in complex biogeochemical cycles, potentially contributing to nutrient recycling or organic matter decomposition in its environment. Understanding the physiological traits of this strain may provide insights into its ecological functions and interactions within microbial ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pollutimonas Pollutimonas bauzanensis Gram-negative rod facultative aerobe/anaerobe 29 mesophilic 658167 FQXE00000000.1 Bac0012153 Ferrimonas marina strain DSM 16917 "Ferrimonas marina strain DSM 16917 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This strain is part of the broader Ferrimonas genus, which is known for its ecological significance in marine environments. The rod shape of Ferrimonas marina suggests adaptations for motility and nutrient acquisition, which are crucial for survival in its aquatic habitat. ↵↵The Gram-negative nature of this microbe indicates the presence of a thin peptidoglycan layer and an outer membrane, characteristic features that can influence its interactions with other microorganisms and its resilience to environmental stresses. The optimal growth temperature of 25.0°C suggests that Ferrimonas marina is well-adapted to temperate marine environments, where such temperatures are frequently encountered.↵↵Understanding the physiological traits of Ferrimonas marina strain DSM 16917 can provide insights into its role in biogeochemical cycles within marine ecosystems. Given its optimal growth conditions, this strain may play a vital role in the degradation of organic matter or in nutrient cycling, which could have implications for marine productivity and ecosystem health. Further studies on its metabolic pathways and interactions with other marine organisms would enhance our understanding of its ecological niche and functional contributions in seawater environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas marina Gram-negative rod 25 mesophilic 299255 FQXG00000000.1 Bac0012154 Tepidibacter thalassicus DSM 15285 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Tepidibacter Tepidibacter thalassicus anaerobic 1123350 FQXH00000000.1 Bac0012155 Anaerosphaera aminiphila DSM 21120 "Anaerosphaera aminiphila DSM 21120 is a Gram-positive, spore-forming spherical bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe exhibits a distinct spherical morphology, which is characteristic of certain anaerobic bacteria, allowing it to adapt to specific ecological niches where oxygen is limited. ↵↵As a spore-former, Anaerosphaera aminiphila has developed the ability to produce spores, which can enhance its survival in harsh environments by providing resilience against adverse conditions. The capacity for sporulation is a significant trait among anaerobic organisms, enabling them to withstand periods of nutrient scarcity or unfavorable environmental changes.↵↵The optimal growth temperature of 37.0°C suggests that Anaerosphaera aminiphila may be well-suited to environments that approximate the temperature of the human body, although specific ecological roles or interactions with host organisms remain to be thoroughly investigated. The anaerobic requirement indicates that this microbe likely participates in biogeochemical processes within its habitat, potentially contributing to nutrient cycling or organic matter degradation in environments devoid of oxygen.↵↵Overall, Anaerosphaera aminiphila DSM 21120 exemplifies the adaptability and ecological significance of anaerobic, spore-forming bacteria, highlighting their role in maintaining microbial diversity and function in anaerobic ecosystems." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerosphaera Anaerosphaera aminiphila Gram-positive sphere non-motile anaerobic 37 mesophilic spore-forming 1120995 FQXI00000000.1 Bac0012156 Thermosipho atlanticus DSM 15807 "Thermosipho atlanticus DSM 15807 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This thermophilic microbe is noteworthy for its adaptation to high-temperature environments, which is typical for organisms in its genus. T. atlanticus is particularly relevant in studies of microbial life in extreme conditions, such as those found in hydrothermal vents and other high-temperature ecosystems.↵↵The preference for anaerobic metabolism suggests that T. atlanticus may play a role in the biogeochemical cycling of elements in its habitat, potentially contributing to processes such as organic matter degradation or the reduction of sulfur compounds. Its ability to thrive at elevated temperatures may also provide insights into the molecular adaptations necessary for life in extreme environments, including the stability of its cellular structures and enzymes.↵↵Overall, the study of Thermosipho atlanticus DSM 15807 could enhance our understanding of microbial diversity in extreme habitats and the evolutionary mechanisms that allow life to flourish under such conditions." Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho atlanticus Gram-negative rod non-motile anaerobic 45 thermophilic 1123380 FQXN00000000.1 Bac0012157 Clostridium collagenovorans DSM 3089 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium collagenovorans anaerobic 1121306 FQXP00000000.1 Bac0012158 Arenitalea lutea strain CGMCC 1.12213 "Arenitalea lutea strain CGMCC 1.12213 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in both aerobic and anaerobic environments. This organism has an optimal growth temperature of 29.0°C, suggesting a preference for moderately warm habitats. ↵↵The Gram-negative nature of A. lutea indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various environmental conditions. Additionally, the rod shape typically facilitates mobility and nutrient absorption, which can be advantageous in diverse ecological niches.↵↵Given its versatile oxygen requirements and optimal growth temperature, A. lutea strain CGMCC 1.12213 may play a significant role in microbial communities where fluctuating oxygen levels are present. Such environments could include sediment layers or anaerobic zones in aquatic systems. This adaptability might allow A. lutea to participate in biogeochemical cycles, particularly in the degradation of organic materials under varying oxygen conditions. Further research into its metabolic pathways could provide insights into its ecological functions and potential applications in bioremediation or environmental management." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Algibacter Algibacter luteus Gram-negative rod motile facultative aerobe/anaerobe 29 mesophilic 1178825 FQYK00000000.1 Bac0012159 Rubritalea squalenifaciens DSM 18772 "Rubritalea squalenifaciens DSM 18772 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and thrives at an optimal temperature of 25.0°C. This organism is characterized by its specific morphological and physiological traits, which contribute to its classification within the microbial community. The Gram-negative cell wall structure is indicative of a double membrane system, which may play a role in its interactions with the environment and other microbial species.↵↵As an aerobic bacterium, Rubritalea squalenifaciens relies on oxygen for its metabolic processes, suggesting a potential preference for habitats where oxygen is readily available. The optimal growth temperature of 25.0°C indicates that this microbe is well-adapted to moderate thermal conditions, which may align with environments such as soil or aquatic systems where temperature fluctuations remain relatively stable. ↵↵The distinct traits of Rubritalea squalenifaciens suggest its potential involvement in biogeochemical cycles, particularly in the breakdown of organic materials in aerobic conditions. Understanding its metabolic pathways and ecological role could provide insights into its function within microbial communities and its contributions to nutrient cycling in its natural habitat. Further research may elucidate its interactions with other microorganisms and its potential applications in biotechnology or environmental management." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Rubritaleaceae Rubritalea Rubritalea squalenifaciens Gram-negative rod non-motile aerobic 25 mesophilic 1123071 FQYR00000000.1 Bac0012160 Parasporobacterium paucivorans DSM 15970 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Parasporobacterium Parasporobacterium paucivorans anaerobic 1122934 FQYT00000000.1 Bac0012161 Maribius salinus strain DSM 26892 "Maribius salinus strain DSM 26892 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 32.0°C and requires oxygen for growth, indicating its aerobic metabolic nature. This strain, belonging to the genus Maribius, is characterized by its adaptation to saline environments, although specific salinity preferences and ecological roles remain unelucidated. ↵↵The rod shape of M. salinus suggests a potential for motility, which may facilitate its colonization and survival in dynamic aquatic habitats. The optimal growth temperature of 32.0°C places this organism within a mesophilic range, suggesting it may inhabit environments that experience moderate thermal conditions, potentially influencing its community interactions and nutrient cycling in saline ecosystems.↵↵Further exploration of the ecological role of M. salinus strain DSM 26892 could reveal insights into its contributions to biogeochemical processes, particularly in salt-rich environments where microbial diversity is critical for maintaining ecosystem functionality. As an aerobic organism, it may play a significant role in the degradation of organic matter, influencing the availability of nutrients and the overall health of its habitat. Understanding the specific mechanisms and interactions of this microbe within its ecological niche could enhance our knowledge of microbial dynamics in saline systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Palleronia Palleronia salina Gram-negative rod non-motile aerobic 32 mesophilic 313368 FQZA00000000.1 Bac0012162 Aureimonas altamirensis DSM 21988 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas altamirensis 1121026 FQZC00000000.1 Bac0012163 Desulfatibacillum alkenivorans DSM 16219 "Desulfatibacillum alkenivorans DSM 16219 is a Gram-negative, rod-shaped bacterium that exhibits strict anaerobic growth. This microbe is non-spore-forming and thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate thermal environments typically found in anaerobic niches. ↵↵As a member of the microbial community, Desulfatibacillum alkenivorans has been studied for its metabolic capabilities, particularly in relation to the degradation of aliphatic hydrocarbons. Its anaerobic nature indicates a potential role in biogeochemical cycles, particularly in environments where oxygen is limited, such as in sediments or oil reservoirs. This bacterium may contribute to the mineralization of organic compounds under anaerobic conditions, thereby influencing the cycling of carbon and sulfur in these ecosystems.↵↵Given its metabolic properties, Desulfatibacillum alkenivorans could play a significant role in the bioremediation of hydrocarbon-contaminated environments, highlighting its potential utility in environmental biotechnology. Understanding its physiological traits offers insights into the ecological functions of anaerobic microorganisms and their contributions to nutrient cycling in anoxic habitats." Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatibacillaceae Desulfatibacillum Desulfatibacillum alkenivorans Gram-negative rod non-motile anaerobic 29 mesophilic non-spore-forming 1121393 FQZU00000000.1 Bac0012164 Bacillus sp. cl25 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. cl25 1761760 FQZW00000000.1 Bac0012165 Maribacter aquivivus strain DSM 16478 "Maribacter aquivivus strain DSM 16478 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolic capabilities and does not form spores. This strain thrives optimally at a temperature of 16.0°C, suggesting an adaptation to cooler environments. The absence of sporulation indicates that Maribacter aquivivus relies on other survival strategies in its ecological niche. ↵↵As a member of the genus Maribacter, this strain is likely to be found in marine environments, where it may contribute to the microbial community's overall functionality. The aerobic nature of Maribacter aquivivus implies a reliance on oxygen for growth, which is typical for many marine bacteria that inhabit well-oxygenated waters. ↵↵Understanding the physiological traits of Maribacter aquivivus can provide insights into the role of such microorganisms in biogeochemical cycles, particularly in nutrient cycling processes in marine ecosystems. The optimal growth temperature of 16.0°C further suggests that this strain could be an important player in colder aquatic habitats, potentially influencing microbial dynamics and nutrient availability in these specific environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter aquivivus Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 228958 FQZX00000000.1 Bac0012166 Hespellia stercorisuis DSM 15480 "Hespellia stercorisuis DSM 15480 is a Gram-positive, rod-shaped bacterium that exhibits an anaerobic metabolism and thrives optimally at a temperature of 37.0°C. As a non-spore-forming organism, it relies on its vegetative state for survival and reproduction under anaerobic conditions. ↵↵The Gram-positive nature of H. stercorisuis suggests the presence of a thick peptidoglycan layer in its cell wall, which is characteristic of many anaerobic bacteria. This structural feature may contribute to its resilience in low-oxygen environments, potentially allowing it to inhabit niches rich in organic matter, such as animal digestive tracts or anaerobic sediments.↵↵The optimal growth temperature of 37.0°C aligns with that of many mesophilic bacteria, indicating a potential adaptation to warm-blooded hosts or environments that maintain stable temperatures. While specific ecological roles remain to be fully characterized, the traits of H. stercorisuis suggest it may play a significant role in microbial communities involved in decomposition processes or nutrient cycling, particularly in anaerobic environments where it could contribute to the breakdown of complex organic compounds. Further research could elucidate its specific interactions within microbial ecosystems and its potential applications in biotechnology or environmental management." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hespellia Hespellia stercorisuis Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 1121950 FQZY00000000.1 Bac0012167 Paraburkholderia terricola strain LMG 20594 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia terricola aerobic 169427 FRAB00000000.1 Bac0012168 Tepidibacter formicigenes DSM 15518 "Tepidibacter formicigenes DSM 15518 is a Gram-positive, rod-shaped bacterium that is characterized as a spore-forming anaerobe, with an optimal growth temperature of 45.0°C. This microbe thrives in oxygen-deprived environments, which is indicative of its metabolic adaptations to anaerobic conditions. Its ability to form spores suggests a resilience to environmental stresses, potentially allowing it to withstand adverse conditions when nutrients are scarce or when faced with unfavorable growth environments.↵↵As a member of the microbial community, Tepidibacter formicigenes may play a significant role in biogeochemical cycles, particularly in anaerobic environments where organic matter decomposition occurs. The optimal growth temperature of 45.0°C points to its potential presence in thermophilic environments, such as hot springs or other geothermal habitats, where it may contribute to the breakdown of complex organic compounds. This thermophilic adaptation not only underscores the bacterium's ecological niche but also hints at its potential applications in biotechnology, particularly in processes that require high-temperature conditions for organic matter degradation. Overall, Tepidibacter formicigenes exemplifies the diverse metabolic capabilities of anaerobic bacteria in thermophilic ecosystems." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Tepidibacter Tepidibacter formicigenes Gram-positive rod anaerobic 45 thermophilic spore-forming 1123349 FRAE00000000.1 Bac0012169 Alicyclobacillus sp. USBA-503 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus tolerans 90970 FRAF00000000.1 Bac0012170 [Clostridium] lactatifermentans DSM 14214 Bacillati Bacillota Clostridia Lachnospirales Anaerotignaceae Anaerotignum Anaerotignum lactatifermentans 160404 FRAH00000000.1 Bac0012171 Caminicella sporogenes DSM 14501 Bacillati Bacillota Clostridia Peptostreptococcales Caminicellaceae Caminicella Caminicella sporogenes anaerobic 1121266 FRAJ00000000.1 Bac0012172 Halomonas sinaiensis strain ALO Sharm Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas caseinilytica 438744 FRAL00000000.1 Bac0012173 Pseudonocardia thermophila strain DSM 43832 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia thermophila 37 mesophilic spore-forming 1848 FRAP00000000.1 Bac0012174 Marinobacter antarcticus strain CGMCC 1.10835 "Marinobacter antarcticus strain CGMCC 1.10835 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, exhibiting optimal growth at a temperature of 25.0°C. This strain is part of the Marinobacter genus, which is known for its ability to inhabit marine environments, suggesting it may play a significant role in biogeochemical processes within such ecosystems.↵↵The Gram-negative nature of this microbe indicates a complex cell envelope structure, characterized by a thin peptidoglycan layer and an outer membrane that may contain lipopolysaccharides. These features are often associated with environmental adaptability, particularly in fluctuating conditions found in marine habitats. The rod shape may confer advantages in motility and nutrient acquisition in aquatic environments, although specific motility traits were not detailed in the provided data.↵↵The preference for aerobic conditions suggests that Marinobacter antarcticus strain CGMCC 1.10835 is likely involved in aerobic metabolic processes, contributing to the cycling of organic matter and nutrients in its habitat. Its optimal growth temperature aligns with the moderate thermal conditions typical of many marine ecosystems, further emphasizing its ecological relevance.↵↵Overall, the traits of Marinobacter antarcticus strain CGMCC 1.10835 indicate its potential role in marine microbiomes, particularly in processes such as organic matter degradation and nutrient cycling in cold ocean waters. Understanding the specific functions of this strain may shed light on its contributions to marine ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter antarcticus Gram-negative rod aerobic 25 mesophilic 564117 FRAQ00000000.1 Bac0012175 Desulfotomaculum aeronauticum DSM 10349 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulforamulus Desulforamulus aeronauticus anaerobic 53343 FRAR00000000.1 Bac0012176 Chryseobacterium polytrichastri strain DSM 26899 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium polytrichastri 1302687 FRAV00000000.1 Bac0012177 Fibrobacter intestinalis strain UWOS Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter intestinalis rumen 28122 FRAW00000000.1 Bac0012178 Fibrobacter sp. UWOV1 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWOV1 1896215 FRBA00000000.1 Bac0012179 Prevotella ruminicola strain KHT3 "Prevotella ruminicola strain KHT3 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions. This strain is host-associated, indicating its adaptation to life within a specific host environment, likely contributing to its ecological roles in the microbial communities found in the gastrointestinal tracts of ruminants. ↵↵As a member of the Prevotella genus, P. ruminicola strain KHT3 is expected to possess metabolic capabilities that allow it to utilize complex polysaccharides, which are abundant in the diets of herbivores. This metabolic activity may play a significant role in the fermentation processes that characterize the digestive physiology of ruminants, potentially influencing nutrient availability and overall host health. ↵↵While P. ruminicola strain KHT3 is not known for sporulation, its nonsporulating nature suggests a reliance on stable, anaerobic environments for survival and growth. Its adaptation to such conditions underscores the importance of oxygen-free habitats in the ecology of the microbiome associated with herbivorous hosts. The study of this strain may provide insights into the dynamics of microbial interactions in the rumen and their contributions to fiber digestion and fermentation, which are critical processes in ruminant nutrition." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Xylanibacter Xylanibacter ruminicola Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 839 FRBD00000000.1 Bac0012180 Fibrobacter sp. UWEL Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWEL 1896209 FRBE00000000.1 Bac0012181 Fibrobacter sp. UWT2 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWT2 1896224 FRBF00000000.1 Bac0012182 Chishuiella changwenlii strain DSM 27989 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chishuiella Chishuiella changwenlii 1434701 FRBH00000000.1 Bac0012183 Streptomyces paucisporeus strain CGMCC 4.2025 "Streptomyces paucisporeus strain CGMCC 4.2025 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives in aerobic conditions. This strain demonstrates optimal growth at a temperature of 32.0°C, indicating a preference for warm environments typically associated with soil and decaying organic matter. The ability to form spores is a significant trait, allowing this microbe to endure adverse environmental conditions and potentially contribute to soil health and nutrient cycling.↵↵As a member of the Streptomyces genus, S. paucisporeus may play a vital role in the production of bioactive compounds, which are often associated with antibiotic production and other secondary metabolites. These characteristics suggest that S. paucisporeus could be of interest in biotechnological applications, particularly in the development of natural products for pharmaceutical use.↵↵The ecological significance of this strain may extend to its interactions within microbial communities in soil ecosystems, where it could influence microbial diversity and activity. Understanding the specific roles and contributions of S. paucisporeus in its native environment could provide insights into its potential applications in agriculture and environmental biotechnology, particularly in promoting sustainable practices through natural biocontrol methods or soil enhancement." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila paucisporea Gram-positive rod non-motile aerobic 32 mesophilic spore-forming 310782 FRBI00000000.1 Bac0012184 Chitinophaga jiangningensis strain DSM 27406 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga jiangningensis 1419482 FRBL00000000.1 Bac0012185 Pseudomonas punonensis strain CECT 8089 "Pseudomonas punonensis strain CECT 8089 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and does not form spores. This strain belongs to the Pseudomonas genus, which is known for its metabolic versatility and ability to thrive in various environments.↵↵The Gram-negative nature of Pseudomonas punonensis indicates a unique cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature can influence the organism's interactions with its surroundings, including resistance to certain antibiotics and environmental stresses.↵↵As a non-spore-forming bacterium, Pseudomonas punonensis relies on its aerobic lifestyle, utilizing oxygen for its respiratory processes. Such a metabolic pathway allows it to efficiently harness energy from organic compounds, contributing to its adaptability in oxygen-rich environments. This trait may also facilitate its role in nutrient cycling, particularly in the degradation of organic materials.↵↵The ecological significance of Pseudomonas punonensis strain CECT 8089 could be further explored in the context of bioremediation or soil health, where aerobic bacteria play crucial roles in the breakdown of pollutants and organic matter. Understanding its metabolic capabilities may provide insights into its potential applications in environmental microbiology, particularly in processes that require aerobic degradation of contaminants." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Phytopseudomonas Phytopseudomonas punonensis Gram-negative rod aerobic non-spore-forming 1220495 FRBQ00000000.1 Bac0012186 Flavobacterium chilense strain DSM 24724 "Flavobacterium chilense strain DSM 24724 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions typically found in aquatic ecosystems. The physiological traits of F. chilense indicate its adaptation to oxygen-rich environments, which is consistent with its aerobic requirement. ↵↵As a member of the Flavobacterium genus, this strain may play a role in the degradation of organic materials and the cycling of nutrients in its habitat, potentially contributing to the ecological balance in freshwater systems. The unique characteristics of F. chilense, including its rod shape and non-sporulating nature, further highlight its potential ecological functions within microbial communities, particularly in environments where organic matter is abundant. Understanding the specific roles of such microorganisms can enhance our knowledge of microbial diversity and functionality in aquatic ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium chilense Gram-negative rod motile aerobic 25 mesophilic non-spore-forming 946677 FRBT00000000.1 Bac0012187 Flavobacterium xanthum strain DSM 3661 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium xanthum 69322 FRBU00000000.1 Bac0012188 Flavobacterium pectinovorum strain DSM 6368 "Flavobacterium pectinovorum strain DSM 6368 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is part of the Flavobacteriaceae family, which is known for its diverse metabolic capabilities and ecological roles. As an aerobic organism, F. pectinovorum strain DSM 6368 requires oxygen for growth, indicating a potential involvement in aerobic degradation processes in its environment.↵↵The distinct Gram-negative nature of this strain suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various ecological niches. The rod shape can facilitate motility and nutrient uptake, enhancing its survival in dynamic environments such as soil or aquatic systems.↵↵F. pectinovorum has been noted for its role in the decomposition of pectin, a polysaccharide commonly found in plant cell walls. This trait not only highlights its potential utility in biotechnological applications, such as waste management and bioremediation, but also underscores its ecological significance in nutrient cycling, particularly in environments rich in organic material.↵↵In summary, the aerobic, Gram-negative, rod-shaped characteristics of Flavobacterium pectinovorum strain DSM 6368 position it as a potentially important microbial agent in the breakdown of complex organic compounds, contributing to the recycling of carbon in various ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium pectinovorum Gram-negative rod motile aerobic 29533 FRBX00000000.1 Bac0012189 Halomonas cupida strain DSM 4740 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas cupida 44933 FRCA00000000.1 Bac0012190 Micrococcus luteus strain VTM4R57 "Micrococcus luteus strain VTM4R57 is a Gram-positive, aerobic coccus that typically exhibits a tetrad arrangement. This strain is part of the Micrococcus genus, which is known for its diverse habitats, suggesting a versatile ecological adaptability. As an aerobe, M. luteus strain VTM4R57 requires oxygen for its metabolic processes, aligning it with other members of the Micrococcus genus that thrive in well-oxygenated environments.↵↵The cocci shape and tetrad arrangement are characteristic of this species, reflecting its unique cellular morphology. The presence of multiple habitats indicates that M. luteus strain VTM4R57 may be found in various ecological niches, potentially including soil, water, and surfaces in the environment, and it may play a role in nutrient cycling within these ecosystems.↵↵Given its aerobic nature and widespread habitat, M. luteus strain VTM4R57 may contribute to the degradation of organic materials or interact with other microbial communities in its environment. The ability to thrive in diverse conditions highlights the ecological significance of this strain in maintaining microbial diversity and functionality in various ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 FRCE00000000.1 Bac0012191 Salinicoccus alkaliphilus DSM 16010 Bacillati Bacillota Bacilli Caryophanales Salinicoccaceae Lacicoccus Lacicoccus alkaliphilus 148453 FRCF00000000.1 Bac0012192 Paracoccus solventivorans strain DSM 6637 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus solventivorans facultative aerobe/anaerobe 53463 FRCK00000000.1 Bac0012193 Flavobacterium xinjiangense strain CGMCC 1.2749 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium xinjiangense 178356 FRCL00000000.1 Bac0012194 Fibrobacter sp. UWB7 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB7 1896206 FRCO00000000.1 Bac0012195 Anaerosporobacter mobilis DSM 15930 "Anaerosporobacter mobilis DSM 15930 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under strictly anaerobic conditions. This microbe is optimally adapted to a temperature of 29.0 °C, suggesting a preference for mesophilic environments, which are typically found in the gastrointestinal tracts of warm-blooded animals or in other organic-rich, low-oxygen habitats. ↵↵The ability of A. mobilis to form spores indicates a strategic adaptation for survival in fluctuating environmental conditions, allowing it to endure periods of nutrient scarcity or harsh environments. The anaerobic nature of this organism implies a metabolic reliance on fermentation pathways, which could contribute to its ecological roles in organic matter decomposition and nutrient cycling.↵↵The specific combination of these traits positions Anaerosporobacter mobilis as an important participant in anaerobic microbial communities, potentially influencing the dynamics of fermentation processes in its native environments. Understanding its metabolic capabilities may provide insights into its role in biotechnological applications, such as anaerobic digestion and the production of biofuels. The study of A. mobilis could also shed light on the evolutionary adaptations of microorganisms to anaerobic niches, underscoring the diversity of life forms that thrive without oxygen." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerosporobacter Anaerosporobacter mobilis Gram-positive rod anaerobic 29 mesophilic spore-forming 1120996 FRCP00000000.1 Bac0012196 Rhizobacter sp. OV335 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Rhizobacter Rhizobacter sp. OV335 1500264 FRCQ00000000.1 Bac0012197 Caldanaerovirga acetigignens strain DSM 18802 "Caldanaerovirga acetigignens strain DSM 18802 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions. This microbe exhibits optimal growth at a temperature of 45.0°C and is characterized as non-spore-forming. The anaerobic nature of C. acetigignens suggests a metabolic adaptation to environments where oxygen is limited, which may influence its ecological niche and interactions with other microbial communities.↵↵The rod shape of this bacterium is indicative of its structural morphology, which may play a role in its metabolic capabilities and ecological functions. As a species that flourishes in higher temperature environments, C. acetigignens could be an important player in thermophilic anaerobic processes, potentially contributing to biogeochemical cycles in extreme habitats such as hot springs or thermally impacted sediments.↵↵Understanding the specific metabolic pathways utilized by C. acetigignens in its anaerobic lifestyle could provide further insights into its role in nutrient cycling and energy flow in its native habitat. This underscores the importance of studying such extremophiles in the context of microbial ecology, as they may harbor unique enzymatic activities and biochemical processes that are not only pivotal for ecosystem functioning but also have potential biotechnological applications." Bacillati Bacillota Clostridia Thermosediminibacterales Thermosediminibacteraceae Caldanaerovirga Caldanaerovirga acetigignens Gram-negative rod non-motile anaerobic 45 thermophilic non-spore-forming 447595 FRCR00000000.1 Bac0012198 Halanaerobium congolense strain 101214 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium congolense 54121 FRCV00000000.1 Bac0012199 Fibrobacter sp. UWR3 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWR3 1896217 FRCW00000000.1 Bac0012200 Fervidobacterium gondwanense DSM 13020 Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium gondwanense anaerobic 1121883 FRDJ00000000.1 Bac0012201 Geodermatophilus obscurus strain DSM 43162 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus obscurus 1861 FRDM00000000.1 Bac0012202 Desulfitobacterium chlororespirans DSM 11544 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium chlororespirans anaerobic 1121395 FRDN00000000.1 Bac0012203 Desulfopila aestuarii DSM 18488 "Desulfopila aestuarii DSM 18488 is a Gram-negative, rod-shaped bacterium that thrives under strictly anaerobic conditions, with an optimal growth temperature of 37.0 °C. This organism is notable for its ability to participate in sulfate reduction, a critical process in various biogeochemical cycles, particularly in anoxic environments such as estuaries and sediments. ↵↵The rod shape of Desulfopila aestuarii contributes to its functionality in biofilm formation and its interactions within microbial communities. Given its anaerobic nature, this microbe is adapted to environments devoid of oxygen, which influences its metabolic pathways and ecological role. The optimal temperature of 37.0 °C suggests a preference for mesophilic conditions, aligning with many other bacteria that inhabit warm, nutrient-rich environments.↵↵Overall, Desulfopila aestuarii DSM 18488 serves as a model organism for studying sulfate-reducing bacteria and their applications in bioremediation and bioenergy production, particularly in the treatment of wastewater and the recovery of valuable resources from organic waste. Its specific traits position it as a vital player in nutrient cycling, contributing to the overall health and stability of anaerobic ecosystems." Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfopila Desulfopila aestuarii Gram-negative rod motile anaerobic 37 mesophilic 1121416 FRFE00000000.1 Bac0012204 Algoriphagus zhangzhouensis strain DSM 25035 "Algoriphagus zhangzhouensis strain DSM 25035 is a Gram-negative, aerobic rod-shaped bacterium, optimally thriving at a temperature of 25.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on favorable environmental conditions for survival rather than the ability to withstand extreme stress through sporulation. ↵↵The aerobic metabolism of A. zhangzhouensis indicates that it requires oxygen for growth, which may limit its habitat to well-aerated environments. This trait is particularly interesting as it positions the organism within niches where oxygen is readily available, potentially influencing its interactions with other microbial communities. ↵↵The specific temperature preference of 25.0°C may suggest a role in temperate ecosystems, where such conditions are prevalent. Given its characteristics, Algoriphagus zhangzhouensis could play a role in the decomposition of organic matter in its native habitat, contributing to nutrient cycling in aquatic environments. Further studies could elucidate its ecological functions, particularly in relation to its interactions with other microorganisms and its contributions to biogeochemical processes in the environments it inhabits." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus zhangzhouensis Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 1073327 FRXN00000000.1 Bac0012205 Pseudoxanthobacter soli DSM 19599 "Pseudoxanthobacter soli DSM 19599 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 37.0°C. This microorganism is characterized by its non-spore-forming nature, which suggests that it relies on vegetative growth for survival and reproduction under favorable conditions. ↵↵As a member of the Pseudoxanthobacter genus, Pseudoxanthobacter soli may play a significant role in the microbial community dynamics of soil ecosystems, particularly in relation to nutrient cycling and organic matter decomposition. Its aerobic metabolism indicates a potential involvement in processes such as nitrification or the degradation of organic pollutants, which can contribute to soil health and fertility. ↵↵The specific adaptations of Pseudoxanthobacter soli to its environment, including its optimal growth temperature and oxygen requirements, suggest that it may be particularly well-suited to thrive in warm, oxygen-rich soils. This adaptability may provide insights into the ecological functions of related microorganisms in similar habitats, highlighting the importance of temperature and oxygen availability in shaping microbial community structure and function in terrestrial ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Segnochrobactraceae Pseudoxanthobacter Pseudoxanthobacter soli Gram-negative rod aerobic 37 mesophilic non-spore-forming 1123029 FRXO00000000.1 Bac0012206 Mycobacterium abscessus subsp. abscessus strain 310 "Mycobacterium abscessus subsp. abscessus strain 310 is a rod-shaped bacterium primarily found in chloraminated water environments. This species belongs to the genus Mycobacterium, which is known for its diverse ecological niches and ability to survive in various habitats, including water systems treated with chloramine as a disinfectant. The rod shape of M. abscessus subsp. abscessus strain 310 is characteristic of the genus, which typically exhibits a range of morphologies, yet rod-shaped forms are predominant among many environmental mycobacteria.↵↵This strain, like other members of its subspecies, may exhibit unique adaptations that allow it to thrive in chloraminated conditions, potentially influencing its survival and proliferation in municipal water supplies. The presence of M. abscessus subsp. abscessus strain 310 in such a habitat underscores its ecological role in biofilm formation and interactions with other microbial communities within water distribution systems. ↵↵Understanding the ecological dynamics of Mycobacterium abscessus subsp. abscessus strain 310 in chloraminated water can provide insights into its resilience and the implications for water quality management, particularly concerning the control of bacterial populations in treated water systems. Further research may elucidate the environmental factors that support its growth and survival, contributing to our comprehension of mycobacterial ecology in aquatic environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FSBR00000000.1 Bac0012207 Mycobacterium abscessus subsp. abscessus strain 800 "Mycobacterium abscessus subsp. abscessus strain 800 is a rod-shaped bacterium that primarily inhabits chloraminated water environments. This environmental niche suggests that the strain has adapted to survive and possibly proliferate in water systems that utilize chloramines as a disinfectant. ↵↵The rod shape of M. abscessus subsp. abscessus is characteristic of mycobacteria, which are known for their unique cell wall structure that includes mycolic acids, contributing to their resilience in various environments. The presence of this strain in chloraminated water raises important considerations regarding water quality management and public health, as members of the Mycobacterium genus are known to exhibit varying degrees of resistance to common disinfectants.↵↵Understanding the ecological role of M. abscessus subsp. abscessus strain 800 in chloraminated systems may provide insights into the dynamics of microbial communities in water treatment facilities. The adaptation of this strain to chloramine-treated environments could have implications for both environmental microbiology and the development of strategies to monitor and control mycobacterial populations in water sources. Thus, the study of this strain can enhance our understanding of microbial survival mechanisms in anthropogenically altered habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FSCO00000000.1 Bac0012208 Mycobacterium abscessus subsp. abscessus strain 417 "Mycobacterium abscessus subsp. abscessus strain 417 is a rod-shaped bacterium that has been isolated from chloraminated water environments. This subspecies of Mycobacterium abscessus is known for its resilience in various aqueous habitats, particularly those treated with chloramine, a common disinfectant used in drinking water treatment processes. The presence of M. abscessus subsp. abscessus strain 417 in chloraminated water suggests an adaptation to survive in chemically challenging environments, which may confer certain advantages for its persistence and growth.↵↵This strain, along with other members of the Mycobacterium genus, is characterized by a complex lipid-rich cell wall that contributes to its robustness against environmental stressors. The ability to thrive in chloraminated settings could indicate a potential for biofilm formation, as many waterborne bacteria utilize such structures to enhance survival in treated water systems. Understanding the ecological role of M. abscessus subsp. abscessus strain 417 in chloraminated water can provide insights into microbial dynamics in drinking water systems and the implications for water quality management. Further investigation into the metabolic pathways and survival strategies of this strain may elucidate its interactions within microbial communities present in similar habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FSEE00000000.1 Bac0012209 Mycobacterium abscessus subsp. abscessus strain 42 "Mycobacterium abscessus subsp. abscessus strain 42 is a rod-shaped bacterium that has been isolated from chloraminated water environments. This environmental niche suggests that the strain has adapted to survive in water systems treated with chloramines, which are commonly used as disinfectants in municipal water supplies. ↵↵The morphological characteristics of M. abscessus subsp. abscessus strain 42 align with those of other members of the Mycobacterium genus, known for their robust cell walls containing mycolic acids, which contribute to their resilience in various environments. The presence of this strain in chloraminated water indicates its potential role in biofilm formation within water distribution systems, which may facilitate its persistence and possible transmission.↵↵Although the pathogenicity and specific ecological interactions of strain 42 are not detailed here, its ability to thrive in treated water environments highlights the need for further investigation into its behavior in engineered water systems and potential implications for public health. Understanding such adaptations may provide insights into water quality management and the prevention of opportunistic infections associated with mycobacterial species." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FSGQ00000000.1 Bac0012210 Mycobacterium abscessus subsp. abscessus strain 642 "Mycobacterium abscessus subsp. abscessus strain 642 is a rod-shaped bacterium that has been identified in chloraminated water environments. This subspecies is a member of the Mycobacterium genus, which is known for its diverse ecological niches and complex cell wall structure, contributing to its resilience in various habitats. The presence of strain 642 in chloraminated water suggests that it has adapted to survive in environments where chlorine disinfection is employed, indicating potential mechanisms for resistance to oxidative stress and biocides.↵↵The rod shape of M. abscessus subsp. abscessus strain 642 may play a role in its motility and attachment to surfaces within its aquatic habitat, which can influence its interactions with other microbial communities. The ability to thrive in chloraminated water also raises questions about its ecological role in biofilm formation and its potential interactions with other microorganisms in this habitat. This strain exemplifies the adaptability of mycobacteria to anthropogenically altered environments, potentially influencing water quality and microbial dynamics in chloraminated systems. Further studies are necessary to elucidate the specific adaptations and ecological interactions of this strain within its habitat." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FSNU00000000.1 Bac0012211 Micromonospora cremea strain DSM 45599 "Micromonospora cremea strain DSM 45599 is a Gram-positive, aerobic bacterium known for its ability to form spores. As a member of the Micromonospora genus, this strain exhibits characteristics typical of soil-dwelling actinobacteria, which are recognized for their ecological roles in nutrient cycling and organic matter decomposition. The spore-forming capability of M. cremea DSM 45599 allows it to endure harsh environmental conditions, promoting its survival and dispersal in various habitats.↵↵This strain thrives in oxygen-rich environments, which is consistent with the metabolic requirements of many actinobacteria. The aerobic nature of M. cremea suggests that it may play a significant role in the degradation of organic materials in well-oxygenated soils, potentially contributing to soil health and fertility. Additionally, the spore formation not only aids in resilience but may also facilitate interaction with other microbial communities, influencing microbial diversity and ecosystem functions.↵↵Overall, the traits of Micromonospora cremea strain DSM 45599 highlight its adaptability and importance in ecological processes, particularly in aerobic environments where it may contribute significantly to the breakdown of organic compounds and the cycling of nutrients." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora cremea Gram-positive non-motile aerobic spore-forming 709881 FSQT00000000.1 Bac0012212 Mycobacterium abscessus subsp. abscessus strain 1135 "Mycobacterium abscessus subsp. abscessus strain 1135 is a rod-shaped bacterium that thrives in chloraminated water environments. This subspecies of Mycobacterium abscessus is part of a complex group of nontuberculous mycobacteria (NTM) known for their environmental resilience. The specific adaptation to chloraminated water suggests a potential role in water systems where chloramine is used as a disinfectant, allowing it to survive and proliferate in conditions that may be inhospitable to other microbial species.↵↵The rod shape of this organism is consistent with the morphology typically observed in mycobacteria, which are characterized by a unique cell wall structure that includes mycolic acids contributing to their robustness. This morphological feature is crucial for its survival in diverse habitats, particularly in environments where chemical disinfection methods are employed.↵↵Given its habitat, Mycobacterium abscessus subsp. abscessus strain 1135 may be indicative of the broader ecological interactions within aquatic systems altered by human activity. Its persistence in treated water could serve as a marker for the presence of other mycobacterial species, thus highlighting its potential role in monitoring water quality and understanding microbial community dynamics in chloraminated environments. Further studies are warranted to elucidate its interactions with other microorganisms and its implications for public health and environmental microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FSQV00000000.1 Bac0012213 Sphingorhabdus marina DSM 22363 "Sphingorhabdus marina DSM 22363 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria and influences its interaction with the environment.↵↵This organism's adaptation to aerobic conditions suggests a metabolic pathway that relies on oxygen as a terminal electron acceptor, which may confer advantages in specific ecological niches, such as marine environments where oxygen levels can vary. The optimal growth temperature of 29.0°C suggests that Sphingorhabdus marina is well-suited to thrive in temperate marine habitats, potentially influencing local microbial communities and contributing to biogeochemical cycles.↵↵Given its specific traits, Sphingorhabdus marina may play a role in nutrient cycling in marine ecosystems, particularly in the degradation of organic matter. Understanding the physiological characteristics of this bacterium can provide insights into its ecological functions and potential applications in biotechnology, particularly in processes that occur in marine environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Parasphingorhabdus Parasphingorhabdus marina Gram-negative rod aerobic 29 mesophilic non-spore-forming 394732 FSQW00000000.1 Bac0012214 Halomonas meridiana strain ACAM 239 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella aquamarina 77097 FSQX00000000.1 Bac0012215 Chitinophaga niabensis strain DSM 24787 "Chitinophaga niabensis strain DSM 24787 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This strain is part of the Chitinophagaceae family, which is notable for its ability to degrade chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The aerobic nature of C. niabensis suggests a metabolic pathway that relies on oxygen for energy production, which may play a significant role in its ecological niche, likely involving the decomposition of organic matter rich in chitin.↵↵The optimal growth temperature of 29.0°C indicates that C. niabensis is well-adapted to mesophilic conditions, potentially aligning with environments such as soils or decaying organic matter where temperatures typically hover around room temperature. This adaptability may facilitate its role in nutrient cycling within its ecosystem, particularly in the breakdown of chitinous materials, thus contributing to the recycling of nutrients and supporting the growth of other microorganisms.↵↵In summary, Chitinophaga niabensis strain DSM 24787 exemplifies the ecological significance of chitin-degrading bacteria in aerobic environments, underscoring their crucial role in the decomposition processes that maintain soil health and fertility." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga niabensis Gram-negative rod non-motile aerobic 29 mesophilic 536979 FSRA00000000.1 Bac0012216 Singulisphaera sp. GP187 Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera sp. GP187 1882752 FSRB00000000.1 Bac0012217 Bradyrhizobium erythrophlei strain GAS478 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium erythrophlei 1437360 FSRD00000000.1 Bac0012218 Paraburkholderia phenazinium strain GAS86 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia phenazinium 60549 FSRM00000000.1 Bac0012219 Carnobacterium alterfunditum strain 313 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium alterfunditum aerobic 28230 FSRN00000000.1 Bac0012220 Nitrosomonas cryotolerans ATCC 49181 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas cryotolerans 1131553 FSRO00000000.1 Bac0012221 Fibrobacter sp. UWB11 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB11 1896202 FSRT00000000.1 Bac0012222 Burkholderia sp. GAS332 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. GAS332 1882750 FSRV00000000.1 Bac0012223 Xenorhabdus innexi strain HGB1681 (deposited as PTA-6826 in the Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus innexi 290109 FTLG00000000.1 Bac0012224 Mucilaginibacter lappiensis strain ATCC BAA-1855 "Mucilaginibacter lappiensis strain ATCC BAA-1855 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 25°C and requires aerobic conditions for its metabolism. This strain is part of the Mucilaginibacter genus, which is characterized by its capacity to thrive in various environments, potentially contributing to its ecological versatility.↵↵As a Gram-negative organism, M. lappiensis possesses a distinctive cell wall structure composed of a thin peptidoglycan layer surrounded by an outer membrane, which may confer advantages in nutrient acquisition and resistance to certain environmental stresses. The aerobic nature of this strain indicates that it relies on oxygen for its metabolic processes, suggesting a possible role in environments where oxygen is readily available.↵↵Given its optimal growth temperature of 25°C, M. lappiensis may be particularly well adapted to temperate habitats, potentially including soil and freshwater ecosystems. The physiological traits of this bacterium may support its involvement in biogeochemical cycles, particularly in the degradation of organic matter and the recycling of nutrients in its native habitats. Further studies could elucidate the specific ecological roles that M. lappiensis plays, particularly in relation to its interactions with other microorganisms in its environment." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter lappiensis Gram-negative rod non-motile aerobic 25 mesophilic 354630 FTMG00000000.1 Bac0012225 Corynebacterium afermentans strain DSM 44280 "Corynebacterium afermentans strain DSM 44280 is a Gram-positive, rod-shaped bacterium that exhibits microaerophilic growth characteristics, thriving optimally at a temperature of 29.0°C. This strain is non-spore-forming, which is a notable trait among many bacteria, as it suggests different survival strategies in response to environmental stresses. ↵↵The microaerophilic nature of C. afermentans indicates that it requires reduced levels of oxygen for growth, which may influence its habitat preferences and interactions with other microorganisms. Such an oxygen requirement typically aligns with environments that are rich in organic matter but may be limited in oxygen availability, such as certain soil types or decaying plant material.↵↵Furthermore, the optimal growth temperature of 29.0°C suggests that this strain may be well adapted to conditions that are not extreme, potentially allowing it to occupy niches that are less competitive but rich in organic substrates. Understanding the physiological traits of C. afermentans strain DSM 44280 provides insight into its potential ecological roles, such as involvement in nutrient cycling in microaerophilic environments. These attributes underscore the importance of studying this strain further to elucidate its specific contributions to microbial communities and ecosystem functions." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium afermentans Gram-positive rod microaerophile 29 mesophilic non-spore-forming 38286 FTMH00000000.1 Bac0012226 Rhizobium sp. RU33A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. RU33A 1907413 FTMQ00000000.1 Bac0012227 Chryseobacterium sp. RU33C Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. RU33C 1907398 FTMT00000000.1 Bac0012228 Aeromonas veronii strain RU31B "Aeromonas veronii strain RU31B is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells, predominantly inhabiting sediment environments. As an aerobic organism, this strain requires oxygen for its metabolic processes, which aligns with its sedimentary habitat where oxygen is often available due to water dynamics and microbial activity.↵↵The rod shape and specific cell arrangements of A. veronii strain RU31B may contribute to its adaptability in sediment, allowing for effective nutrient uptake and interaction with other microbial communities present in this niche. The sediment habitat could also facilitate its role in biogeochemical cycles, particularly in the degradation of organic matter and the cycling of nutrients. ↵↵Understanding the ecological role of A. veronii strain RU31B within sedimentary environments can provide insights into microbial interactions and the functions of sediment-dwelling bacteria in maintaining ecosystem health. The strain's aerobic nature suggests it may compete for resources with other aerobic microorganisms, potentially influencing community composition and metabolic activities in these habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles Animal; Human 654 FTMU00000000.1 Bac0012229 Pseudacidovorax sp. RU35E Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Pseudacidovorax Pseudacidovorax sp. RU35E 1907403 FTMY00000000.1 Bac0012230 Micromonospora avicenniae strain DSM 45758 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora avicenniae 1198245 FTNF00000000.1 Bac0012231 Aeromonas hydrophila strain RU34C "Aeromonas hydrophila strain RU34C is a Gram-negative, rod-shaped bacterium that exhibits a diverse cell arrangement, forming chains, pairs, and singles. This strain is classified as a facultative aerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may contribute to its adaptability in various habitats. It is a heterotrophic organism, relying on organic compounds for energy, which may facilitate its survival in a range of ecological niches.↵↵The optimal growth temperature for Aeromonas hydrophila strain RU34C is 22.0°C, suggesting a preference for moderate environmental conditions that are typically found in freshwater ecosystems. This temperature range may reflect the natural habitats of Aeromonas species, which are often associated with aquatic environments.↵↵The versatility in its oxygen requirements and energy sourcing points to a potential role in nutrient cycling within its habitats, where it may participate in the breakdown of organic matter. The capacity to form chains and other arrangements may also enhance its survival and competitiveness in diverse ecological settings. Therefore, Aeromonas hydrophila strain RU34C exemplifies a microbe with significant ecological flexibility, enabling it to exploit various resources and adapt to changing environmental conditions in its habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 644 FTNG00000000.1 Bac0012232 Microbispora rosea strain ATCC 12950 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Microbispora Microbispora rosea 29 mesophilic 58117 FTNI00000000.1 Bac0012233 Enterobacter kobei strain ATCC BAA-260 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter kobei 208224 FTNJ00000000.1 Bac0012234 Pontibacter lucknowensis strain DM9 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter lucknowensis 1077936 FTNM00000000.1 Bac0012235 Shewanella morhuae Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella morhuae 365591 FTNN00000000.1 Bac0012236 Haladaptatus litoreus strain CGMCC 1.7737 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus litoreus 553468 FTNO00000000.1 Bac0012237 Natronorubrum thiooxidans strain HArc-T Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum thiooxidans 308853 FTNR00000000.1 Bac0012238 Williamsia sterculiae strain CPCC 203464 "Williamsia sterculiae strain CPCC 203464 is a Gram-positive, aerobic rod-shaped bacterium that optimally thrives at a temperature of 29.0°C. This strain is characterized by its non-spore-forming nature, distinguishing it from many other bacterial species that utilize sporulation as a survival strategy under adverse conditions. ↵↵The Gram-positive classification indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resistance to certain environmental stresses. The aerobic requirement suggests that W. sterculiae strain CPCC 203464 relies on oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. ↵↵The optimal growth temperature of 29.0°C places this strain within a mesophilic range, likely allowing it to inhabit environments that experience moderate temperatures, such as soil or decaying plant material, though specific ecological niches are not detailed in the provided traits. ↵↵This bacterium's non-spore-forming characteristic may reflect its ecological adaptability, potentially favoring environments with stable conditions where sporulation would be less necessary for survival. Understanding the physiological traits of Williamsia sterculiae strain CPCC 203464 contributes to a broader comprehension of microbial diversity and adaptations within aerobic ecosystems. Further studies may elucidate its role in nutrient cycling or its interactions with other microorganisms in its habitat." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia sterculiae Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1344003 FTNT00000000.1 Bac0012239 Roseovarius nanhaiticus strain DSM 29590 "Roseovarius nanhaiticus strain DSM 29590 is a Gram-negative, non-spore-forming bacterium characterized by its ovoid shape and aerobic metabolism. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments, which may reflect its adaptation to specific ecological niches.↵↵As a member of the Roseovarius genus, R. nanhaiticus is part of a group known for its diverse metabolic capabilities and potential roles in various biogeochemical cycles. The aerobic nature of this strain suggests that it relies on oxygen for its metabolic processes, which could influence its ecological interactions, particularly in oxygen-rich environments.↵↵The absence of sporulation in R. nanhaiticus indicates that it may not possess mechanisms for enduring extreme environmental conditions through spore formation. Instead, its survival and proliferation may depend on other adaptive strategies, such as utilizing available nutrients efficiently or forming symbiotic relationships with other microbial or macrobial organisms.↵↵Understanding the physiological traits of Roseovarius nanhaiticus strain DSM 29590 provides insights into its potential role in microbial communities, particularly in marine or estuarine environments where oxygen levels are sufficient for aerobic organisms. Further research may elucidate its ecological functions and interactions, contributing to our understanding of microbial diversity and ecosystem dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius nanhaiticus Gram-negative ovoid aerobic 29 mesophilic non-spore-forming 573024 FTNV00000000.1 Bac0012240 Insolitispirillum peregrinum strain DSM 11589 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Novispirillaceae Insolitispirillum Insolitispirillum peregrinum aerobic 80876 FTOA00000000.1 Bac0012241 Kroppenstedtia eburnea strain DSM 45196 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Kroppenstedtia Kroppenstedtia eburnea aerobic / microaerophile 714067 FTOD00000000.1 Bac0012242 Corynebacterium appendicis CIP 107643 strain DSM 44531 "Corynebacterium appendicis CIP 107643 strain DSM 44531 is a Gram-positive bacterium characterized by its pleomorphic morphology, exhibiting shapes that can resemble stars or dumbbells. This strain is non-spore-forming and has an optimal growth temperature of 37.0°C, indicating its capacity to thrive in warm environments typically associated with mammalian hosts. As a microaerophile, C. appendicis requires reduced oxygen levels for optimal growth, suggesting a potential adaptation to specific ecological niches where oxygen concentration is lower than atmospheric levels. ↵↵The pleomorphic nature of C. appendicis may contribute to its ability to colonize diverse environments or interact with various host systems. The unique combination of its morphological characteristics, temperature preference, and oxygen requirements could play a significant role in its ecological interactions, particularly in environments that mimic the conditions of host tissues. Further studies may elucidate the ecological significance and potential applications of this strain in microbiological research or biotechnology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium appendicis Gram-positive star/dumbbell/pleomorphic non-motile microaerophile 37 mesophilic non-spore-forming 163202 FTOF00000000.1 Bac0012243 Oleibacter marinus strain DSM 24913 "Oleibacter marinus strain DSM 24913 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic lifestyle and thrives at an optimal temperature of 29.0°C. As a representative of the Oleibacter genus, this strain is characterized by its adaptation to marine environments, which is suggestive of its potential role in coastal microbial communities. The Gram-negative cell wall structure of O. marinus is indicative of a complex outer membrane that may contribute to its interactions within marine ecosystems, including nutrient uptake and protection against environmental stressors.↵↵Cultivation of Oleibacter marinus strain DSM 24913 under controlled laboratory conditions demonstrates its preference for aerobic conditions, which aligns with its potential involvement in biogeochemical cycles, particularly in oxygen-rich marine habitats. The specific temperature optima suggest that this organism is well-suited to moderate thermal environments, typical of subtropical or temperate marine waters.↵↵Furthermore, the physiological traits of O. marinus strain DSM 24913 highlight its possible role in the degradation of organic compounds prevalent in marine settings, thus contributing to nutrient cycling and the maintenance of ecological balance within its habitat. Understanding the metabolic capabilities and ecological functions of such marine bacteria can provide valuable insights into the dynamics of microbial communities and their responses to environmental changes in oceanic systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Thalassolituus Thalassolituus maritimus Gram-negative rod aerobic 29 mesophilic 484498 FTOH00000000.1 Bac0012244 Chryseobacterium chaponense strain DSM 23145 "Chryseobacterium chaponense strain DSM 23145 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and inability to form spores. This strain, part of the Chryseobacterium genus, exhibits typical traits of non-spore-forming bacteria, which may influence its survival strategies and ecological interactions. As an aerobic organism, it relies on oxygen for its metabolic processes, suggesting a preference for environments where oxygen is readily available.↵↵The absence of spore formation indicates that C. chaponense may have adapted to specific ecological niches where it can thrive without the need for dormancy mechanisms typically employed by spore-forming bacteria. This trait may also affect its responses to environmental stressors, potentially limiting its resilience in harsher conditions compared to spore-forming counterparts. ↵↵Research on Chryseobacterium species has highlighted their roles in various environments, particularly in soil and aquatic systems, where they can contribute to nutrient cycling and organic matter degradation. The specific ecological insights regarding C. chaponense strain DSM 23145 may further our understanding of its role in microbial communities, particularly in relation to its aerobic metabolism and interactions with other microorganisms in oxygen-rich habitats. Such interactions may be crucial for maintaining ecosystem balance and promoting biodiversity." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella chaponensis Gram-negative rod non-motile aerobic non-spore-forming 713588 FTOI00000000.1 Bac0012245 Salimicrobium salexigens strain DSM 22782 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salimicrobium Salimicrobium salexigens 908941 FTOK00000000.1 Bac0012246 Rhodobacter vinaykumarii strain DSM 18714 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Phaeovulum Phaeovulum vinaykumarii 407234 FTOM00000000.1 Bac0012247 Alicyclobacillus vulcanalis strain DSM 16176 "Alicyclobacillus vulcanalis strain DSM 16176 is a Gram-positive, rod-shaped bacterium that is capable of forming spores and thrives optimally at a temperature of 45.0 °C. This thermophilic organism requires aerobic conditions for growth, underscoring its adaptation to environments with ample oxygen. ↵↵The ability of A. vulcanalis to form spores is significant, as it allows the microbe to survive in harsh environmental conditions, including high temperatures and potential nutrient scarcity. Its optimal growth temperature of 45.0 °C suggests a preference for hot environments, which may include geothermal areas or other habitats characterized by elevated thermal conditions.↵↵The physiological traits of A. vulcanalis indicate a potential role in biogeochemical cycles, particularly in thermophilic environments where organic matter decomposition occurs. Its aerobic metabolism could contribute to nutrient recycling processes in such ecosystems. Understanding the ecological role of A. vulcanalis may provide insights into microbial community dynamics in extreme habitats and its potential applications in biotechnology, particularly in processes requiring high-temperature conditions." Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus vulcanalis Gram-positive rod aerobic 45 thermophilic spore-forming 252246 FTOO00000000.1 Bac0012248 Paracoccus saliphilus strain DSM 18447 "Paracoccus saliphilus strain DSM 18447 is a Gram-negative, non-spore-forming spherical bacterium that thrives under aerobic conditions, with an optimal growth temperature of 37.0°C. As a member of the genus Paracoccus, this strain exhibits traits typical of its relatives, including the ability to utilize various organic compounds, although specific metabolic capabilities are not detailed here. ↵↵The spherical morphology of P. saliphilus suggests adaptations that may facilitate its survival in distinct environments, potentially allowing for efficient nutrient uptake and interaction with surrounding microbial communities. The fact that it is non-spore-forming indicates that this organism may rely on its immediate environmental conditions for survival, which could influence its ecological niche, particularly in high-salinity habitats where it was originally isolated. ↵↵Understanding the growth conditions and morphological characteristics of Paracoccus saliphilus strain DSM 18447 can provide insights into its physiological responses to environmental stressors. The preference for aerobic conditions may indicate its reliance on oxygen for energy production, positioning it as a potential player in biogeochemical cycles where oxygen is available. Thus, the strain could have important implications for microbial ecology, particularly in saline environments where oxygen dynamics are critical for microbial community structure and function." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus saliphilus Gram-negative sphere non-motile aerobic 37 mesophilic non-spore-forming 405559 FTOU00000000.1 Bac0012249 Chryseobacterium gambrini strain DSM 18014 "Chryseobacterium gambrini strain DSM 18014 is a Gram-negative, aerobic, non-spore-forming rod-shaped bacterium. This strain is part of the Chryseobacterium genus, which is notable for its diversity and ecological significance. As an aerobic organism, C. gambrini strain DSM 18014 requires oxygen for its metabolic processes, distinguishing it from anaerobic bacteria, which can thrive in low-oxygen environments.↵↵The morphology of C. gambrini, characterized by its rod shape, is typical for many members of the Chryseobacterium genus, which often exhibit versatile metabolic capabilities. The non-spore-forming nature of this strain indicates that it lacks the ability to enter a dormant state under adverse conditions, which may have implications for its survival and adaptability in various environments.↵↵C. gambrini's traits suggest potential roles in nutrient cycling and its interactions within microbial communities. Given its aerobic metabolism, this strain may contribute to the decomposition of organic matter in oxygen-rich environments, such as soil or aquatic ecosystems. The presence of this bacterium in such ecosystems could be indicative of a healthy microbial community, highlighting its potential significance in biogeochemical processes. Further research could elucidate the specific ecological roles and interactions of Chryseobacterium gambrini strain DSM 18014 within its native habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gambrini Gram-negative rod non-motile aerobic non-spore-forming 373672 FTOV00000000.1 Bac0012250 Burkholderia sp. b14 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. b14 1761775 FTPJ00000000.1 Bac0012251 Burkholderia sp. b13 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. b13 1761774 FTPM00000000.1 Bac0012252 Microbacterium sp. RU33B Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. RU33B 1907390 FTPO00000000.1 Bac0012253 Chryseobacterium bovis DSM 19482 "Chryseobacterium bovis DSM 19482 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. The optimal growth temperature for this microbe is approximately 32.0°C, indicating a preference for moderate thermal environments, which may reflect its adaptation to specific ecological niches. ↵↵As a member of the Chryseobacterium genus, C. bovis is likely to possess metabolic versatility, enabling it to utilize a range of substrates for growth and energy production. This adaptability could facilitate its survival in diverse habitats, including soil and water environments where organic matter is present. The ability to function under both aerobic and anaerobic conditions suggests that C. bovis may play a role in biogeochemical cycles, particularly in the degradation of organic compounds in environments that undergo fluctuations in oxygen availability.↵↵Understanding the traits of C. bovis can provide insights into its potential ecological roles, particularly in nutrient cycling and organic matter decomposition within its habitat. Further research may elucidate the specific substrates it utilizes and the broader implications of its metabolic activities in natural ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas bovis Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic 421530 FTPU00000000.1 Bac0012254 Psychrobacter sp. CIP 110854 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter piechaudii 1945521 FUGE00000000.1 Bac0012255 Actinomycetales bacterium JB111 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetales bacterium JB111 1434822 FUHX00000000.1 Bac0012256 Corynebacterium glutamicum strain B Co 03.31 "Corynebacterium glutamicum strain B Co 03.31 is a Gram-positive bacterium recognized for its potential in biotechnological applications, particularly in the production of amino acids. This strain is part of the Corynebacterium genus, which is characterized by its club-shaped morphology and non-pathogenic nature. C. glutamicum is widely studied for its metabolic capabilities, including the utilization of various carbon sources, which facilitates its role in industrial microbiology.↵↵As a Gram-positive organism, C. glutamicum exhibits a thick peptidoglycan layer in its cell wall, a feature that is significant for its structural integrity and resistance to certain environmental stresses. This trait also influences its staining characteristics and offers insights into its classification within bacterial taxonomy. ↵↵Corynebacterium glutamicum strain B Co 03.31 may be particularly valuable for its ability to synthesize L-glutamate and L-lysine, which are essential amino acids with numerous applications in food and pharmaceutical industries. The metabolic pathways employed by this strain for amino acid production can provide a basis for genetic engineering to enhance yields or to produce novel compounds.↵↵In the larger context of microbial ecology, the presence of C. glutamicum strains such as B Co 03.31 in various environments may contribute to nutrient cycling, particularly in the processing of organic materials where amino acids are critical for microbial growth and activity. This highlights the ecological importance of C. glutamicum beyond its industrial significance." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum positive 1718 FUIB00000000.1 Bac0012257 Gulosibacter sp. 10 strain 10(10) Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gulosibacter Gulosibacter sp. 10 1255570 FUIC00000000.1 Bac0012258 Psychrobacter sp. JB385 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. JB385 1434841 FUKN00000000.1 Bac0012259 Microbacterium esteraromaticum strain B Mb 05.01 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium esteraromaticum 57043 FUKO00000000.1 Bac0012260 Micrococcus lylae strain 2B3F Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus lylae aerobic 1273 FUKP00000000.1 Bac0012261 Micrococcus luteus Mu201 "Micrococcus luteus Mu201 is a Gram-positive bacterium characterized by its cocci shape and distinctive arrangement in tetrads. This organism is obligately aerobic, requiring oxygen for growth and metabolism. It is known to inhabit a variety of environments, suggesting a versatile ecological adaptability.↵↵Micrococcus luteus strains, including Mu201, are often found in soil, dust, and on the surfaces of animals and plants, indicating their widespread presence in various habitats. The tetrad arrangement is a notable feature that assists in the identification of this species under the microscope. Additionally, the ability of M. luteus to thrive in diverse environments may be attributed to its metabolic versatility, allowing it to utilize different substrates for energy.↵↵Research on Micrococcus luteus has underscored its role in various ecological processes, including its potential involvement in biogeochemical cycles. The presence of M. luteus in multiple habitats highlights its ecological significance and suggests that it may contribute to the microbial diversity and functionality of those environments. Furthermore, the adaptability of this microbe could provide insights into microbial resilience in changing ecological conditions." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads 1255578 FUKT00000000.1 Bac0012262 Marinilactibacillus psychrotolerans 42ea Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Marinilactibacillus Marinilactibacillus psychrotolerans 1255609 FUKW00000000.1 Bac0012263 Sphingobacterium faecium PCAi_F2.5 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium faecium 1255690 FUKX00000000.1 Bac0012264 Sediminibacterium ginsengisoli strain DSM 22335 "Sediminibacterium ginsengisoli strain DSM 22335 is a Gram-negative, rod-shaped bacterium characterized as a facultative aerobe/anaerobe, with an optimal growth temperature of 29.0 °C. This non-spore-forming organism is part of a group often associated with various environmental niches, highlighting its adaptability to changing oxygen levels and its ability to thrive in moderately warm conditions.↵↵The facultative anaerobic nature of Sediminibacterium ginsengisoli suggests a metabolic flexibility that allows it to utilize both aerobic and anaerobic respiration, which may confer advantages in diverse habitats, such as soil or decaying organic material. Its Gram-negative cell wall structure is indicative of a complex membrane system, which may play a role in its interactions with other microorganisms and the environment.↵↵Understanding the physiological traits of Sediminibacterium ginsengisoli provides insight into its potential ecological roles, particularly in nutrient cycling and organic matter decomposition. Its optimal growth temperature of 29.0 °C indicates a preference for warm environments, which may align with its presence in specific biogeographical regions where such temperatures are prevalent. Consequently, this microbe may contribute significantly to soil health and fertility, influencing the microbial community dynamics in its native habitats." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium ginsengisoli Gram-negative rod motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 413434 FUWH00000000.1 Bac0012265 Pantoea eucalypti strain NFPP29 "Pantoea eucalypti strain NFPP29 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities. As a non-spore-forming microbe, it demonstrates adaptability in various oxygen conditions, allowing it to thrive in diverse environments. ↵↵The classification of Pantoea eucalypti within the broader context of the Pantoea genus suggests potential associations with plant hosts, particularly eucalyptus species, although specific ecological interactions remain to be fully elucidated. The ability to utilize different metabolic pathways may enable this strain to occupy various ecological niches, contributing to its resilience in fluctuating environmental conditions. ↵↵Furthermore, the non-spore-forming characteristic implies that this strain may rely on other survival strategies, such as biofilm formation or metabolic versatility, which could be significant in its interaction with plant roots or other substrates. The adaptability of Pantoea eucalypti strain NFPP29 underlines its potential role in the rhizosphere, where it may influence nutrient cycling or contribute to plant health through mutualistic relationships. Further investigation into its biochemical capabilities and ecological interactions would enhance our understanding of its role within its native habitat and its potential applications in agriculture or bioremediation." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea eucalypti Gram-negative rod facultative aerobe/anaerobe non-spore-forming 470933 FUWI00000000.1 Bac0012266 Selenihalanaerobacter shriftii strain ATCC BAA-73 Bacillati Bacillota Clostridia Halanaerobiales Halobacteroidaceae Selenihalanaerobacter Selenihalanaerobacter shriftii 142842 FUWM00000000.1 Bac0012267 Globicatella sulfidifaciens DSM 15739 "Globicatella sulfidifaciens DSM 15739 is a spherical microbe characterized as either Gram-negative or Gram-positive, exhibiting a unique adaptability within its cellular structure. This organism thrives optimally at a temperature of 37.0°C, suggesting a preference for mesophilic conditions, which are commonly found in various environmental niches and possibly within host organisms. As a microaerophile, G. sulfidifaciens requires a reduced level of oxygen for growth, indicating a specific ecological role that may involve the degradation of organic matter in oxygen-limited environments.↵↵The ability to survive and proliferate under microaerophilic conditions may allow G. sulfidifaciens to play a significant role in biogeochemical cycles, particularly in environments where oxygen is scarce but organic substrates are present. Such environments could include certain soil types, sediments, or anoxic zones in aquatic ecosystems. The sphere shape of this microbe may also contribute to its survival and interaction with other microbial communities in these complex habitats. Understanding the ecological roles and metabolic pathways of G. sulfidifaciens could provide insights into its potential applications in biotechnology or environmental management, particularly in processes involving sulfur cycling or organic matter decomposition." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Globicatella Globicatella sulfidifaciens Gram-negative / Gram-positive sphere microaerophile 37 mesophilic 1121925 FUWO00000000.1 Bac0012268 Photobacterium sp. H01100410B strain CECT 9189T Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium toruni 1935446 FUWP00000000.1 Bac0012269 Marinactinospora thermotolerans DSM 45154 "Marinactinospora thermotolerans DSM 45154 is a Gram-positive, spore-forming bacterium that thrives optimally at a temperature of 29.0°C and exhibits an aerobic metabolism. This organism belongs to the group of actinobacteria, which are known for their complex life cycles and ability to produce a variety of bioactive compounds. The capacity for sporulation suggests that Marinactinospora thermotolerans has evolved mechanisms for survival under adverse environmental conditions, allowing it to withstand fluctuations in temperature and nutrient availability.↵↵The Gram-positive nature of Marinactinospora thermotolerans indicates the presence of a thick peptidoglycan layer in its cell wall, a characteristic that may contribute to its resilience and ability to form spores. Aerobic respiration implies that this microbe requires oxygen for growth, which is consistent with its potential ecological niche in oxygen-rich environments, possibly in marine sediments or biofilms where organic matter decomposition occurs.↵↵Understanding the traits of Marinactinospora thermotolerans can provide insights into its ecological role, particularly in nutrient cycling within its habitat. Its spore-forming capability may not only aid in survival but also facilitate dispersal, potentially allowing this bacterium to colonize new environments effectively. This adaptation may play a crucial role in maintaining microbial diversity and ecosystem stability in marine ecosystems, highlighting the importance of studying such microorganisms in the context of environmental microbiology." Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Marinactinospora Marinactinospora thermotolerans Gram-positive aerobic 29 mesophilic spore-forming 1122192 FUWS00000000.1 Bac0012270 Fibrobacter intestinalis strain ATCC 43854 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter intestinalis rumen 28122 FUWU00000000.1 Bac0012271 Mycoplasma verecundum strain ATCC 27862 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis verecunda 171291 FUXF00000000.1 Bac0012272 Pilibacter termitis strain ATCC BAA-1030 "Pilibacter termitis strain ATCC BAA-1030 is a Gram-positive, rod-shaped bacterium that exhibits anaerobic growth and is non-spore-forming. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for mesophilic environments typically found in decomposing organic matter. Its anaerobic nature suggests that it relies on fermentation or other anaerobic metabolic pathways for energy production, which is characteristic of many bacteria inhabiting low-oxygen environments.↵↵Pilibacter termitis has been identified in association with termite guts, which reflects its potential role in the breakdown of complex organic compounds, particularly cellulose. Such degradation processes are crucial for nutrient cycling in ecosystems where termites are prevalent, highlighting the importance of this bacterium in facilitating the digestion of plant material. By participating in the symbiotic relationships within the termite gut, Pilibacter termitis may contribute to the overall digestive efficiency of these insects, thereby influencing soil health and the decomposition processes within their habitats.↵↵The metabolic capabilities of Pilibacter termitis, coupled with its anaerobic lifestyle, suggest that it plays a significant role in the microbial communities associated with termite nests, underscoring its ecological relevance in nutrient recycling within these unique environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Pilibacter Pilibacter termitis Gram-positive rod non-motile anaerobic 25 mesophilic non-spore-forming 263852 FUXI00000000.1 Bac0012273 Lysobacter spongiicola DSM 21749 "Lysobacter spongiicola DSM 21749 is a Gram-negative, rod-shaped bacterium that demonstrates an aerobic metabolism, thriving optimally at a temperature of 25.0°C. This species belongs to the genus Lysobacter, known for its ecological role in soil and its association with various organic materials. The Gram-negative nature of L. spongiicola indicates the presence of a thin peptidoglycan layer and an outer membrane, characteristic of many bacteria that contribute to diverse biochemical processes in their environments. ↵↵The rod shape of L. spongiicola may facilitate its motility and surface adherence, allowing it to effectively colonize ecological niches where it can play a role in the degradation of complex organic compounds. Aerobic respiration suggests a reliance on oxygen for energy production, which is common among soil-dwelling bacteria that often compete for resources in oxygen-rich environments. ↵↵The optimal growth temperature of 25.0°C suggests that L. spongiicola is adapted to moderate climates, typical of many terrestrial ecosystems. This adaptability may position it as a significant participant in nutrient cycling, particularly in the decomposition of organic matter, thereby contributing to soil health and fertility. Further research into its metabolic pathways could provide insights into its functional roles within microbial communities and its potential applications in bioremediation or agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Novilysobacter Novilysobacter spongiicola Gram-negative rod aerobic 25 mesophilic 1122188 FUXP00000000.1 Bac0012274 Enterovibrio nigricans DSM 22720 "Enterovibrio nigricans DSM 22720 is a Gram-negative, rod-shaped bacterium characterized as a facultative aerobe/anaerobe, with an optimal growth temperature of 16.0°C. This organism exhibits metabolic flexibility, allowing it to thrive in both aerobic and anaerobic environments, which could enhance its adaptability to varying ecological niches. ↵↵The Gram-negative nature of E. nigricans indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this group of bacteria. This structural composition can influence its interactions within microbial communities and its response to environmental stressors.↵↵The optimal temperature of 16.0°C suggests that E. nigricans is likely suited to cooler environments, potentially making it relevant to ecosystems such as marine habitats or cold freshwater systems, where it may play a role in nutrient cycling or organic matter decomposition. The ability to grow in the presence of varying oxygen levels may also indicate its involvement in diverse metabolic processes, contributing to its ecological versatility. ↵↵In summary, Enterovibrio nigricans DSM 22720 represents a unique microbial entity with specific physiological adaptations that may allow it to occupy specialized ecological niches, particularly in cooler aquatic environments. Further studies on its metabolic pathways and ecological interactions could provide deeper insights into its role in microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Enterovibrio Enterovibrio nigricans Gram-negative rod facultative aerobe/anaerobe 16 psychrotolerant 1121868 FUXU00000000.1 Bac0012275 Desulfovibrio bizertensis DSM 18034 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfobaculum Desulfobaculum bizertense anaerobic 376490 FUYA00000000.1 Bac0012276 Thiothrix eikelboomii strain ATCC 49788 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Thiothrix Thiothrix eikelboomii 92487 FUYB00000000.1 Bac0012277 Desulfovibrio gracilis DSM 16080 "Desulfovibrio gracilis DSM 16080 is a rod-shaped, non-spore-forming bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This species belongs to the genus Desulfovibrio, which is known for its role in sulfate reduction. As an obligate anaerobe, D. gracilis requires environments devoid of oxygen for its metabolic processes, highlighting its adaptation to niche habitats such as sediments and organic matter-decomposing environments.↵↵In laboratory studies, D. gracilis has demonstrated specific metabolic capabilities that allow it to utilize sulfate as a terminal electron acceptor during the oxidation of organic compounds. This metabolic pathway is crucial for the biogeochemical cycling of sulfur in anaerobic ecosystems, contributing to the transformation of sulfates into sulfides, which can play significant roles in nutrient availability and microbial community dynamics.↵↵Given its anaerobic lifestyle and metabolic versatility, D. gracilis may be an important player in biotechnological applications, particularly in bioremediation strategies aimed at managing sulfate-rich waste or in the enhancement of anaerobic digestion processes. Its presence in natural environments underscores the intricate relationships between microbial life and geochemical cycles, illustrating the importance of anaerobic bacteria in maintaining ecological balance in their respective habitats." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Paucidesulfovibrio Paucidesulfovibrio gracilis rod anaerobic 37 mesophilic non-spore-forming 47158 FUYC00000000.1 Bac0012278 Agreia bicolorata strain VKM Ac-2052 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agreia Agreia bicolorata 29 mesophilic 110935 FUYG00000000.1 Bac0012279 Caloramator quimbayensis strain USBA 833 "Caloramator quimbayensis strain USBA 833 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under anaerobic conditions. This strain is optimally active at a temperature of 45.0°C, suggesting a preference for moderately thermophilic environments. The ability to form spores likely confers resilience to adverse environmental conditions, allowing it to survive in habitats where nutrient availability may fluctuate. ↵↵As an anaerobe, C. quimbayensis strain USBA 833 is adapted to environments devoid of oxygen, which may include deep-sea sediments, geothermal springs, or other niches characterized by low redox potential. The combination of its temperature preference and anaerobic metabolism may indicate its involvement in specific biogeochemical processes, such as the degradation of organic matter and the cycling of nutrients in high-temperature, low-oxygen ecosystems. Further exploration of its ecological roles could provide insights into its contributions to microbial communities in thermophilic environments." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Caloramator Caloramator quimbayensis Gram-positive rod anaerobic 45 thermophilic spore-forming 1147123 FUYH00000000.1 Bac0012280 Luteibacter sp. 22Crub2.1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter sp. 22Crub2.1 1283288 FUYT00000000.1 Bac0012281 Dyadobacter psychrophilus strain DSM 22270 "Dyadobacter psychrophilus strain DSM 22270 is a Gram-negative, ovoid-shaped bacterium that demonstrates an optimal growth temperature of 16.0°C and requires aerobic conditions for metabolism. This psychrophilic strain is notably adapted to thrive in cold environments, indicating a potential role in biogeochemical processes in polar or temperate regions where lower temperatures prevail. The aerobic nature of this microbe suggests it may be involved in the degradation of organic matter in oxygen-rich environments, contributing to nutrient cycling in its ecological niche. Furthermore, the unique combination of its morphological characteristics and physiological requirements underscores its potential significance in cold-adapted microbial communities, where such traits may confer competitive advantages in nutrient acquisition and survival." Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter psychrophilus Gram-negative ovoid non-motile aerobic 16 psychrotolerant 651661 FUZA00000000.1 Bac0012282 Arthrobacter sp. 49Tsu3.1M3 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. 49Tsu3.1M3 1279029 FUZD00000000.1 Bac0012283 Lachnospiraceae bacterium strain KH1P17 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 1898203 FUZG00000000.1 Bac0012284 Okibacterium fritillariae strain VKM Ac-2059 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Okibacterium Okibacterium fritillariae 123320 FUZP00000000.1 Bac0012285 Promicromonospora flava strain DSM 21481 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Krasilnikoviella Krasilnikoviella flava 526729 FUZQ00000000.1 Bac0012286 Clostridium halophilum strain M1 Bacillati Bacillota Clostridia Peptostreptococcales Caminicellaceae Maledivibacter Maledivibacter halophilus 36842 FUZT00000000.1 Bac0012287 Ohtaekwangia koreensis strain DSM 25262 Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Ohtaekwangia Ohtaekwangia koreensis aerobic 688867 FUZU00000000.1 Bac0012288 Mycobacterium abscessus subsp. bolletii strain 369 "Mycobacterium abscessus subsp. bolletii strain 369 is a rod-shaped bacterium that has been isolated from chloraminated water, suggesting its adaptability to environments characterized by the presence of disinfectants commonly used in municipal water systems. This subspecies is a member of the Mycobacteriaceae family, which includes a range of environmental and pathogenic mycobacteria. ↵↵The rod shape of M. abscessus bolletii strain 369 is typical of many mycobacterial species, which are known for their complex cell walls that often confer resistance to harsh environmental conditions. The bacterium's habitat in chloraminated water indicates a potential for survival and proliferation in treated water supplies, where it could pose challenges for water quality management. ↵↵While specific pathogenicity traits for strain 369 are not detailed, members of the Mycobacterium abscessus complex are generally recognized for their ability to cause opportunistic infections, particularly in immunocompromised individuals. Given its unique habitat, M. abscessus bolletii strain 369 may play a role in the biofilm formation within water distribution systems, potentially influencing both microbial community dynamics and water quality. Understanding the ecological role of this strain in chloraminated environments can inform water treatment practices and highlight the need for ongoing surveillance of mycobacterial species in public health contexts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FVHG00000000.1 Bac0012289 Mycobacterium abscessus subsp. abscessus strain 1000 "Mycobacterium abscessus subsp. abscessus strain 1000 is a rod-shaped bacterium that has been identified in chloraminated water environments. This strain is a member of the Mycobacterium genus, which is known for its complex cell wall structure and resilience in various habitats. The presence of M. abscessus in chloraminated water suggests its ability to survive in treated water systems, potentially due to its adaptive mechanisms that allow it to withstand disinfectants such as chlorine or chloramine.↵↵The rod shape of M. abscessus subsp. abscessus strain 1000 is characteristic of the Mycobacterium genus and may influence its motility and biofilm formation capabilities in aquatic environments. While this microbe is often associated with human infections, the specific pathogenic potential of strain 1000 has not been detailed in the available data. Its habitat indicates a possible role in bioengineering or bioremediation processes, particularly in water treatment facilities where chloramines are employed.↵↵Furthermore, the detection of M. abscessus subsp. abscessus strain 1000 in chloraminated water may point to its ecological role as a survivor in environments with chemical stressors, providing insights into microbial resilience and adaptation strategies in human-altered ecosystems. Understanding the traits and environmental niches of this strain can contribute to broader discussions on microbial diversity and water quality management." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FVMP00000000.1 Bac0012290 Mycobacterium abscessus subsp. massiliense strain 114 "Mycobacterium abscessus subsp. massiliense strain 114 is a rod-shaped bacterium primarily found in chloraminated water. This environmental niche suggests that the organism has adapted to survive in water systems treated with chloramine, a common disinfectant used in municipal water supplies. The ability to thrive in such conditions indicates a level of resilience to chemical stressors, which may be a characteristic feature of this subspecies.↵↵As a member of the Mycobacterium genus, M. abscessus subsp. massiliense strain 114 may exhibit specific physiological adaptations that facilitate its survival in water, including the potential for biofilm formation, which is commonly observed in mycobacterial species. This could enhance its survival by providing protection against biocides and promoting persistence in water infrastructure. ↵↵The presence of this strain in chloraminated water systems highlights the importance of monitoring environmental mycobacteria, as their survival strategies might offer insights into microbial ecology and the development of resistance mechanisms in aquatic environments. Understanding such traits could be crucial for assessing the implications of water quality on public health and the management of microbial communities in treated water systems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FVNU00000000.1 Bac0012291 Mycobacterium abscessus subsp. massiliense strain "Mycobacterium abscessus subsp. massiliense strain is a rod-shaped bacterium that is typically found in chloraminated water environments. This subspecies belongs to the Mycobacterium genus, which is characterized by its distinctive cell wall structure rich in mycolic acids, contributing to its unique physiological and staining properties. ↵↵The habitat of M. abscessus subsp. massiliense in chloraminated water suggests an adaptation to environments where chlorine disinfection is employed, allowing it to survive and thrive in conditions that may be inhospitable to other microbial species. This capability may be partially attributed to its robust cell wall, which can withstand harsh chemical agents. ↵↵Given its presence in treated water systems, M. abscessus subsp. massiliense may play a role in the microbiome of such environments, potentially influencing microbial community dynamics and interactions. Understanding this strain's ecological role could provide insights into how water treatment processes affect microbial diversity and the implications for public health, particularly in areas where exposure to environmental mycobacteria may occur. Further studies on its ecology and interactions with other microorganisms in chloraminated water could yield valuable information regarding its survival strategies and potential implications for water quality management." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FVSM00000000.1 Bac0012292 Mycobacterium abscessus subsp. bolletii strain 515 "Mycobacterium abscessus subsp. bolletii strain 515 is a rod-shaped bacterium that has been identified in chloraminated water environments. This subspecies of Mycobacterium abscessus is part of a group of non-tuberculous mycobacteria (NTM) that are increasingly recognized for their environmental persistence and potential impact on human health. The identification of strain 515 in chloraminated water suggests its adaptation to survive in treated water systems, which can serve as reservoirs for various opportunistic pathogens.↵↵The rod morphology of strain 515 may contribute to its ecological versatility, allowing it to occupy various niches within aquatic environments. The presence of Mycobacterium abscessus subsp. bolletii in chloraminated water highlights the importance of monitoring water quality in public health efforts, particularly in areas where water treatment processes may fail to eliminate mycobacterial species. Additionally, the ability of this strain to thrive in chloraminated conditions indicates possible resistance mechanisms to chlorine-based disinfection methods commonly employed in water treatment facilities.↵↵While the full ecological role of strain 515 remains to be elucidated, its isolation from a chloraminated water habitat suggests a potential niche specialization that may influence the dynamics of microbial communities in treated water systems. Understanding these traits is crucial for assessing the environmental persistence of Mycobacterium species and their implications for public health and water management practices." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 FVVO00000000.1 Bac0012293 Bacillus sp. V-88 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. V-88 1938744 FVZH00000000.1 Bac0012294 Enterobacter sp. NFR05 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. NFR05 1566259 FVZI00000000.1 Bac0012295 Candidatus Desulfamplus magnetomortis Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfamplus Desulfamplus magnetovallimortis 1246637 FWEV00000000.1 Bac0012296 Brachybacterium faecium strain FM_RA_Lac3 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium faecium 43669 FWFH00000000.1 Bac0012297 Pseudooceanicola marinus strain CECT 7751 "Pseudooceanicola marinus strain CECT 7751 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism and an optimal growth temperature of 32.0°C. As a non-spore-forming organism, it demonstrates a reliance on vegetative growth and can thrive in varying oxygen conditions, allowing it to adapt to diverse environments. ↵↵The Gram-negative nature of this strain suggests a complex cell wall structure, which typically includes an outer membrane containing lipopolysaccharides, contributing to its resilience in fluctuating conditions. The rod shape may enhance nutrient uptake and motility, potentially facilitating its survival in aquatic habitats.↵↵Pseudooceanicola marinus strain CECT 7751's ability to grow under both aerobic and anaerobic conditions indicates a versatile metabolic capacity, enabling it to exploit a range of organic substrates for energy. This trait is particularly advantageous in environments where oxygen availability may fluctuate, such as marine sediments or anaerobic zones in water columns.↵↵The ecological implications of Pseudooceanicola marinus strain CECT 7751 could be significant, as its metabolic flexibility may play a role in nutrient cycling within marine ecosystems. By adapting to varying oxygen levels and utilizing diverse organic compounds, this bacterium may contribute to the breakdown of organic matter, influencing overall microbial community dynamics and nutrient availability in its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola marinus Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic non-spore-forming 396013 FWFN00000000.1 Bac0012298 Ruegeria meonggei strain CECT 8411 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria meonggei 1446476 FWFP00000000.1 Bac0012299 Pseudooctadecabacter jejudonensis strain CECT 8397 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooctadecabacter Pseudooctadecabacter jejudonensis 1391910 FWFT00000000.1 Bac0012300 Palleronia marisminoris strain CECT 7066 "Palleronia marisminoris strain CECT 7066 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits optimal growth at 29.0°C and requires aerobic conditions for metabolism. Its classification within the Palleronia genus suggests that it may share certain ecological niches typically associated with aquatic environments, as many members of this genus have been isolated from marine habitats. ↵↵The rod shape of Palleronia marisminoris strain CECT 7066 is characteristic of various bacterial taxa, allowing for diverse interactions within microbial communities. The aerobic nature of this strain indicates its reliance on oxygen for growth, which may influence its distribution in environments where oxygen levels fluctuate. ↵↵Given that this strain does not form spores, it may be less adapted to survive extreme environmental stresses compared to spore-forming bacteria. Instead, its survival may be closely tied to its immediate habitat, where it could contribute to nutrient cycling or other ecological functions. The specific optimal growth temperature of 29.0°C suggests that it occupies a niche within moderately warm environments, which could be relevant for understanding its interactions with other microorganisms and its overall role in marine ecosystems. This highlights the potential importance of temperature and oxygen availability in shaping the ecological dynamics of bacteria like Palleronia marisminoris strain CECT 7066." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Palleronia Palleronia marisminoris Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 315423 FWFV00000000.1 Bac0012301 Roseovarius albus strain CECT 7450 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius albus 1247867 FWFX00000000.1 Bac0012302 Endozoicomonas sp. S-B4-1U Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Parendozoicomonas Parendozoicomonas haliclonae 1960125 FWPT00000000.1 Bac0012303 Corynebacterium glucuronolyticum strain DSM 44120 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glucuronolyticum microaerophile 37 mesophilic non-spore-forming 39791 FWWS00000000.1 Bac0012304 Desulfonispora thiosulfatigenes DSM 11270 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulfonispora Desulfonispora thiosulfatigenes anaerobic 656914 FWWT00000000.1 Bac0012305 Sulfobacillus thermosulfidooxidans DSM 9293 Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Sulfobacillus Sulfobacillus thermosulfidooxidans 929705 FWWY00000000.1 Bac0012306 Andreprevotia lacus DSM 23236 "Andreprevotia lacus DSM 23236 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic metabolic capabilities and thrives optimally at a temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative means for survival and reproduction. The Gram-negative cell wall structure of A. lacus suggests a complex outer membrane that could contribute to its environmental resilience and adaptability. ↵↵Given its aerobic nature, A. lacus likely requires oxygen for growth, which may influence its ecological niche, potentially residing in oxygen-rich environments such as freshwater lakes or similar aquatic habitats. The optimal growth temperature of 29.0°C indicates a preference for mesophilic conditions, which may be reflective of its native ecological settings or industrial applications in biotechnological processes, where temperature control is vital. ↵↵This organism's specific traits suggest a role in nutrient cycling within its environment, particularly in the degradation of organic materials, which is essential for maintaining ecosystem health. Such functionalities underline the importance of A. lacus in understanding microbial diversity and the ecological roles that Gram-negative bacteria play in freshwater ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Andreprevotia Andreprevotia lacus Gram-negative rod aerobic 29 mesophilic non-spore-forming 1121001 FWXD00000000.1 Bac0012307 Desulfacinum hydrothermale DSM 13146 Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfacinum Desulfacinum hydrothermale anaerobic 1121390 FWXF00000000.1 Bac0012308 Novosphingobium sp. B1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. B1 1938756 FWXL00000000.1 Bac0012309 Cellulophaga tyrosinoxydans strain DSM 21164 "Cellulophaga tyrosinoxydans strain DSM 21164 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. This strain has been characterized for its specific metabolic capabilities, particularly its ability to degrade complex organic compounds, which positions it as a potential player in biotechnological applications related to waste treatment and environmental bioremediation. ↵↵The Gram-negative cell wall structure of C. tyrosinoxydans contributes to its resilience in various environments, potentially allowing it to interact with diverse microbial communities. Its aerobic nature suggests that it is well-adapted to oxygen-rich habitats, where it may utilize oxygen to metabolize organic substrates efficiently. The optimal growth temperature of 25.0°C indicates its preference for mesophilic conditions, which are often found in natural aquatic environments.↵↵Given these traits, C. tyrosinoxydans DSM 21164 may play a significant role in the degradation of cellulose and other polysaccharides in its native ecosystem, contributing to nutrient cycling and organic matter turnover. This underscores the potential of this strain in ecological applications, particularly in processes aimed at biomass conversion and the sustainable management of organic waste." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga tyrosinoxydans Gram-negative rod motile aerobic 25 mesophilic 504486 FWXO00000000.1 Bac0012310 Ruminococcaceae bacterium strain KHP2 "Ruminococcaceae bacterium strain KHP2 is an obligate anaerobic microbe belonging to the family Ruminococcaceae. Although its Gram stain characteristics remain uncharacterized, this strain is adapted to thrive in environments devoid of oxygen, which is typical for many members of this family that are often found in the gastrointestinal tracts of herbivorous mammals. ↵↵Obligate anaerobes like Ruminococcaceae bacterium strain KHP2 play a significant role in the fermentation processes within their ecological niches. They contribute to the breakdown of complex polysaccharides, such as cellulose, into simpler compounds, which can be utilized by both the microbe itself and its host. This metabolic activity is crucial for nutrient recycling and energy production in the gut ecosystem. ↵↵The specific conditions and substrates preferred by strain KHP2 have not been detailed, but its classification within the Ruminococcaceae family suggests potential interactions with other gut microbiota, highlighting its importance in maintaining a balanced microbiome. Further studies could elucidate the precise metabolic pathways employed by this strain, as well as its contributions to the health and nutrition of its host organism. Understanding such relationships will enhance our knowledge of microbial ecology within anaerobic environments, particularly in relation to gut health and fermentation processes." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillospiraceae bacterium Uncharacterized Obligate anaerobe 2485925 FWXP00000000.1 Bac0012311 Pseudomonas sp. URIL14HWK12:I5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URIL14HWK12:I5 1261630 FWXQ00000000.1 Bac0012312 Moheibacter sediminis strain CGMCC 1.12708 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Moheibacter Moheibacter sediminis 1434700 FWXS00000000.1 Bac0012313 Pedobacter africanus strain DSM 12126 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter africanus 151894 FWXT00000000.1 Bac0012314 Rhizobium sp. RU36D Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. RU36D 1907415 FWXU00000000.1 Bac0012315 Clostridiales bacterium strain WTE2008 Bacillati Bacillota Clostridia Eubacteriales Aristaeellaceae Aristaeella Aristaeella lactis 3046383 FWXZ00000000.1 Bac0012316 Lentzea albidocapillata strain DSM 44073 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea albidocapillata aerobic 37 mesophilic 40571 FWYC00000000.1 Bac0012317 Reichenbachiella faecimaris strain DSM 26133 Pseudomonadati Bacteroidota Cytophagia Cytophagales Reichenbachiellaceae Reichenbachiella Reichenbachiella faecimaris 692418 FWYF00000000.1 Bac0012318 Desulfovibrio sp. K3S Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio gilichinskyi 872 FWZU00000000.1 Bac0012319 Pseudomonas sp. LAMO17WK12:I1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LAMO17WK12:I1 1265486 FWZV00000000.1 Bac0012320 Cellulosimicrobium cellulans J1 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium cellulans 903523 FXAA00000000.1 Bac0012321 Kocuria indica strain NIO-1021 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria marina 223184 FXAC00000000.1 Bac0012322 Pseudomonas sp. URMO17WK12:I5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URMO17WK12:I5 1305834 FXAD00000000.1 Bac0012323 Rhizobium oryzae strain B4P Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Xaviernesmea Xaviernesmea oryzae 464029 FXAF00000000.1 Bac0012324 Azospirillum oryzae strain A2P "Azospirillum oryzae strain A2P is a curved or spiral-shaped bacterium characterized by its facultative aerobe/anaerobe oxygen requirement and optimal growth temperature of 29.0 °C. This strain exhibits versatility in its metabolic capabilities, allowing it to thrive in varying oxygen environments, which is indicative of its adaptability to different ecological niches. ↵↵The curved or spiral morphology of Azospirillum oryzae strain A2P is typical of the genus, potentially playing a role in its motility and biofilm formation, which are critical for its interactions with plant roots. As a member of the Azospirillum genus, this strain may be associated with nitrogen fixation processes, thereby contributing to soil fertility and plant growth. Its optimal temperature suggests a preference for warm environments, which may limit its distribution to regions with similar climatic conditions.↵↵Understanding the traits of Azospirillum oryzae strain A2P provides insights into its potential applications in agricultural biotechnology, particularly in enhancing crop productivity through its diazotrophic capabilities. Given its growth preferences, this strain could be particularly beneficial in sustainable agricultural practices within temperate to tropical zones, where it may aid in reducing reliance on synthetic fertilizers while promoting soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum oryzae curved/spiral facultative aerobe/anaerobe 29 mesophilic 286727 FXAK00000000.1 Bac0012325 Burkholderia sp. LMG 28154 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia singularis 1503053 FXAN00000000.1 Bac0012326 Arenibacter troitsensis strain DSM 19835 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Arenibacter Arenibacter troitsensis 188872 FXAO00000000.1 Bac0012327 Corynebacterium pollutisoli strain VDS "Corynebacterium pollutisoli strain VDS is a Gram-positive, ovoid-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderate environmental conditions. Its Gram-positive nature suggests a thick peptidoglycan layer in its cell wall, a characteristic that may contribute to its resilience in various habitats.↵↵The aerobic requirement of C. pollutisoli strain VDS implies that it relies on oxygen for its metabolic processes, which may influence its ecological niche, potentially placing it in oxygen-rich environments such as soil or water bodies. The absence of sporulation capabilities further indicates that this strain may be less adapted to survive extreme conditions compared to spore-forming bacteria, relying instead on stable conditions for growth and reproduction.↵↵Understanding the specific characteristics of C. pollutisoli strain VDS enhances our knowledge of microbial diversity and the functional roles these organisms may play in their respective ecosystems. Given its growth requirements and morphological features, this strain may contribute to nutrient cycling or organic matter decomposition in its natural habitat, highlighting its potential significance in maintaining ecosystem health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pollutisoli Gram-positive ovoid non-motile aerobic 29 mesophilic non-spore-forming 1610489 FXAR00000000.1 Bac0012328 Cedecea sp. NFIX57 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea sp. NFIX57 1566286 FXAS00000000.1 Bac0012329 Paraburkholderia susongensis strain LMG 29540 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia susongensis 1515439 FXAT00000000.1 Bac0012330 Sphingobacterium psychroaquaticum strain DSM 22418 "Sphingobacterium psychroaquaticum strain DSM 22418 is a Gram-negative, aerobic rod-shaped bacterium that exhibits notable adaptations to cold environments. This strain is characterized by its psychrophilic nature, which enables it to thrive at low temperatures, a trait that may be advantageous in its native habitats, typically associated with aquatic environments. ↵↵The Gram-negative cell wall structure of Sphingobacterium psychroaquaticum contributes to its ability to withstand various osmotic pressures, which is likely important for survival in fluctuating aquatic ecosystems. Its aerobic metabolism suggests that it relies on oxygen for energy production, indicating a potential role in the biogeochemical cycling of nutrients in oxygen-rich aquatic systems. ↵↵The ecological significance of this bacterium may extend to its participation in the degradation of organic materials in cold aquatic settings, where it could play a role in the breakdown of complex compounds, thereby contributing to nutrient availability in its environment. Furthermore, the presence of Sphingobacterium psychroaquaticum in these ecosystems could indicate the resilience of microbial communities in extreme conditions, highlighting the adaptability of life in response to environmental stressors." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium psychroaquaticum Gram-negative rod aerobic 561061 FXAU00000000.1 Bac0012331 Fibrobacter sp. UWB13 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB13 1896204 FXAX00000000.1 Bac0012332 Agreia pratensis strain VKM Ac-2510 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agreia Agreia pratensis 29 mesophilic 150121 FXAY00000000.1 Bac0012333 Paenibacillus sp. 11 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus aquistagni 1852522 FXAZ00000000.1 Bac0012334 Mesorhizobium australicum strain B5P Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium australicum Australian soils 536018 FXBL00000000.1 Bac0012335 Rathayibacter sp. VKM Ac-2121 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter oskolensis 1891671 FXBM00000000.1 Bac0012336 Maritimibacter sp. HL-12 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Maritimibacter Maritimibacter sp. HL-12 1162418 FXBQ00000000.1 Bac0012337 Idiomarina planktonica strain CGMCC 1.12458 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina planktonica 1323738 FXWH00000000.1 Bac0012338 Bacillus sp. OV166 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. OV166 1882763 FXWM00000000.1 Bac0012339 Raoultella ornithinolytica strain 3380STDY6027361 "Raoultella ornithinolytica strain 3380STDY6027361 is a Gram-negative, nonsporulating rod that exhibits facultative anaerobic metabolism, thriving optimally at a temperature of 37.0°C. As a chemoheterotroph, this bacterium acquires energy through the consumption of organic compounds, which suggests its adaptability to diverse environments. ↵↵The strain's habitat is noted to be multiple, indicating a broad ecological niche, which may allow it to inhabit various environments, including soil, water, and possibly in association with different organisms. This versatility in habitat could reflect its capacity to utilize a wide range of substrates, further enhancing its ecological resilience.↵↵Overall, Raoultella ornithinolytica strain 3380STDY6027361 exemplifies the metabolic flexibility and environmental adaptability characteristic of many members of the Enterobacteriaceae family, potentially playing a role in biogeochemical cycles in its various habitats. Further investigation into its ecological roles may yield insights into its interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella ornithinolytica Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 54291 FXWO00000000.1 Bac0012340 Boseongicola aestuarii strain CECT 8489 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Boseongicola Boseongicola aestuarii 1470561 FXXQ00000000.1 Bac0012341 Octadecabacter ascidiaceicola strain CECT 8868 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Octadecabacter Octadecabacter ascidiaceicola 1655543 FXYD00000000.1 Bac0012342 Pelagimonas varians strain CECT 8663 "Pelagimonas varians strain CECT 8663 is a Gram-negative, rod-shaped bacterium that exhibits an optimal growth temperature of 29.0°C and is categorized as an aerobic organism. This strain is part of a broader group of microbes known for their adaptation to aquatic environments, suggesting its potential role in marine or freshwater ecosystems. The Gram-negative nature of Pelagimonas varians indicates a complex cell wall structure, characterized by a thin layer of peptidoglycan surrounded by an outer membrane, a feature that may confer specific survival advantages in competitive environments.↵↵The aerobic metabolism of this strain implies that it relies on oxygen for its growth and energy production, which may influence its distribution and ecological interactions in environments where oxygen levels fluctuate. The optimal growth temperature of 29.0°C suggests that Pelagimonas varians thrives in warm aquatic habitats, possibly contributing to biogeochemical cycles in such settings.↵↵Given these traits, Pelagimonas varians strain CECT 8663 may play a role in nutrient cycling and organic matter degradation in its native habitat. Its rod shape and Gram-negative classification may also enable it to engage in specific interactions with other microbial communities, potentially influencing community dynamics and ecosystem health. Understanding the physiological and ecological roles of this strain can provide insights into the adaptability of microbial life in varying environmental conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pelagimonas Pelagimonas varians Gram-negative rod aerobic 29 mesophilic 696760 FXYH00000000.1 Bac0012343 Brevibacterium linens ATCC 9172 "Brevibacterium linens ATCC 9172 is a Gram-positive bacterium characterized by its aerobic metabolic requirements. This microbe is notable for its role in various fermentation processes and is frequently associated with the production of certain cheeses, where it contributes to flavor development and rind formation. As an aerobic organism, B. linens ATCC 9172 requires oxygen for its growth and metabolic activities, which may influence its ecological niche, particularly in environments where oxygen is readily available.↵↵In addition to its application in food microbiology, Brevibacterium linens is of interest due to its potential in biotechnological applications, including the production of antimicrobial compounds. Its ability to thrive in oxygen-rich conditions may also suggest its adaptability to various environments, further emphasizing its role in both natural and industrial ecosystems. The presence of this bacterium in cheese ripening environments highlights its significance in the complex interactions of microbial communities that shape food characteristics and safety.↵↵Overall, Brevibacterium linens ATCC 9172 exemplifies the intricate balance of microbial life, showcasing the interplay between environmental conditions and microbial metabolism, which can lead to significant contributions in the fields of food science and biotechnology." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium linens Positive Aerobe 1255617 FXYY00000000.1 Bac0012344 Brevibacterium aurantiacum strain ATCC 9175 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 FXZB00000000.1 Bac0012345 Brevibacterium casei CIP 102111 "Brevibacterium casei CIP 102111 is a Gram-positive, aerobic bacterium known for its robust metabolic capabilities in oxygen-rich environments. This microorganism is characterized by its ability to thrive in aerobic conditions, which suggests an adaptive advantage in niches where oxygen is readily available. The Gram-positive nature of B. casei CIP 102111 indicates a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and resilience.↵↵As an aerobic organism, B. casei CIP 102111 likely engages in respiration processes that utilize oxygen as the terminal electron acceptor, which may enhance its growth and energy yield compared to anaerobic counterparts. This trait is particularly important in various biotechnological applications, where oxygen availability can influence the metabolic pathways and product yields of microbial cultures.↵↵Understanding the physiological characteristics of Brevibacterium casei CIP 102111 can provide insights into its potential applications in fermentation processes, particularly in the food industry, where aerobic bacteria are often utilized for flavor development and preservation. Furthermore, the ability to thrive in oxygen-rich environments may allow B. casei CIP 102111 to play a role in microbial succession in aerobic habitats, highlighting its ecological importance in such settings where it may contribute to nutrient cycling and the maintenance of microbial diversity." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei Positive Aerobe 1255625 FXZC00000000.1 Bac0012346 Brevibacterium antiquum CNRZ 918 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium antiquum 1255637 FXZD00000000.1 Bac0012347 Brevibacterium sp. Mu109 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium sp. Mu109 1255669 FXZF00000000.1 Bac0012348 Brevibacterium aurantiacum strain CNRZ 920 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 FXZG00000000.1 Bac0012349 Brevibacterium sp. 239c Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium sp. 239c 1965356 FXZH00000000.1 Bac0012350 Loktanella marina strain CECT 8899 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Flavimaricola Flavimaricola marinus 1819565 FXZK00000000.1 Bac0012351 Brevibacterium jeotgali strain SJ5-8 "Brevibacterium jeotgali strain SJ5-8 is a Gram-positive, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. As a non-spore-forming organism, this strain exhibits a consistent morphological and physiological profile typical of its genus, which is characterized by robust growth in oxygen-rich environments.↵↵The Gram-positive nature of Brevibacterium jeotgali strain SJ5-8 suggests a thick peptidoglycan layer in its cell wall, a trait that may contribute to its resilience and ability to withstand various environmental stresses. This characteristic aligns with the general physiology of many members of the Brevibacterium genus, which are often found in diverse habitats, including fermented foods and soil.↵↵The preference for aerobic conditions indicates that strain SJ5-8 may play a role in the biogeochemical cycling of nutrients in its environment, potentially participating in processes such as organic matter decomposition. Its optimal growth temperature of 29.0°C suggests an adaptation to mesophilic conditions, which may correlate with its occurrence in environments that do not experience extreme temperature fluctuations, such as certain foods or natural ecosystems.↵↵Overall, Brevibacterium jeotgali strain SJ5-8 exemplifies the ecological versatility often observed in Gram-positive bacteria, highlighting its potential significance in both microbial ecology and food-related applications. Further studies could elucidate its functional roles in specific environments, contributing to a deeper understanding of its ecological interactions." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium jeotgali Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1262550 FXZM00000000.1 Bac0012352 Photobacterium aquimaris strain CECT 9191T Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium aquimaris aerobic 512643 FYAH00000000.1 Bac0012353 Photobacterium sp. CECT 9190 strain CECT 9190T Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium malacitanum 2204294 FYAK00000000.1 Bac0012354 Flavobacterium psychrophilum strain DK095 "Flavobacterium psychrophilum strain DK095 is a nonsporulating, rod-shaped bacterium characterized as a chemoheterotroph, with an optimal growth temperature of 15.0°C. This strain is part of a broader group of microorganisms that thrive in cooler environments, suggesting an adaptation to psychrophilic conditions. The capability of F. psychrophilum to utilize a variety of organic compounds as energy sources reflects its ecological versatility, allowing it to inhabit multiple environments.↵↵The habitat diversity associated with this strain indicates its potential role in various ecosystems, likely contributing to nutrient cycling and organic matter degradation in colder aquatic or terrestrial environments. Given its psychrophilic nature, Flavobacterium psychrophilum strain DK095 may play a significant role in biogeochemical processes in polar and temperate regions, where it could influence microbial community dynamics and ecosystem functions. Understanding the specific ecological roles of this strain can provide insights into the adaptations of microorganisms to cold environments and their potential contributions to ecosystem resilience under changing climatic conditions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum Rod No 1 15 Chemoheterotroph Psychrophilic Multiple Nonsporulating 96345 FYCI00000000.1 Bac0012355 Rhodospirillales bacterium B29T1 Pseudomonadati Pseudomonadota Alphaproteobacteria Geminicoccales Geminicoccaceae Arboricoccus Arboricoccus pini 1963835 FYEH00000000.1 Bac0012356 Streptomyces sp. PgraA7 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PgraA7 1157641 FYEJ00000000.1 Bac0012357 Polynucleobacter sp. MWH-VicM1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter victoriensis 2049319 FYEX00000000.1 Bac0012358 Streptomyces sp. 2114.4 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2114.4 1938836 FYEY00000000.1 Bac0012359 Marinobacter sp. es.048 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. es.048 1761795 FYFA00000000.1 Bac0012360 Acinetobacter apis strain ANC 5114 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter apis aerobic 1229165 FZLN00000000.1 Bac0012361 Frankia sp. ARgP5 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia canadensis 1836972 FZMO00000000.1 Bac0012362 Paracoccus sediminis strain DSM 26170 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sediminis 1214787 FZNM00000000.1 Bac0012363 Puniceibacterium sediminis Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Puniceibacterium Puniceibacterium sediminis 1608407 FZNN00000000.1 Bac0012364 Actinoplanes regularis strain DSM 43151 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes regularis 29 mesophilic spore-forming 52697 FZNR00000000.1 Bac0012365 Lutibacter agarilyticus strain DSM 29150 "Lutibacter agarilyticus strain DSM 29150 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This strain is notable for its non-spore-forming nature, which distinguishes it from many other bacterial species that utilize sporulation as a means of survival in unfavorable conditions.↵↵As a member of its genus, Lutibacter agarilyticus may be involved in specific ecological interactions, particularly in environments rich in organic matter. Its aerobic metabolism suggests a potential role in the degradation of complex organic substances, contributing to nutrient cycling within its habitat. The optimal temperature of 25.0°C indicates a preference for moderate environmental conditions, which may align with its isolation from temperate ecosystems.↵↵The physiological traits of Lutibacter agarilyticus strain DSM 29150 underscore its potential utility in biotechnological applications, particularly in the biodegradation of pollutants or organic waste materials in aerobic treatment processes. Further research into its metabolic capabilities could reveal specific pathways utilized for organic matter degradation, enhancing our understanding of its ecological role in aerobic environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Lutibacter Lutibacter agarilyticus Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 1109740 FZNT00000000.1 Bac0012366 Maribacter sedimenticola strain DSM 19840 "Maribacter sedimenticola strain DSM 19840 is a Gram-negative, rod-shaped bacterium that is non-spore-forming and exhibits an aerobic metabolism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions typical of marine environments. ↵↵The classification of M. sedimenticola within the genus Maribacter suggests that it may play a role in the microbial communities associated with sedimentary habitats, although specific ecological interactions remain to be elucidated. Its aerobic nature implies that it requires oxygen for growth, which aligns with its potential niche in oxygen-rich environments such as coastal sediments or water columns. ↵↵Understanding the traits of M. sedimenticola can provide insights into the metabolic processes occurring in these ecosystems. For instance, the absence of sporulation may suggest a reliance on stable environmental conditions or nutrient availability for survival, rather than the ability to withstand extreme stressors through spore formation. This characteristic, combined with its optimal growth temperature, may indicate its ecological role in nutrient cycling and organic matter degradation within its habitat. Further research into its physiological and biochemical pathways could illuminate its contributions to sedimentary ecosystems and microbial diversity." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter sedimenticola Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 228956 FZNV00000000.1 Bac0012367 Dokdonia pacifica strain DSM 25597 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia pacifica 1627892 FZNY00000000.1 Bac0012368 Streptomyces glauciniger strain CGMCC 4.1858 "Streptomyces glauciniger strain CGMCC 4.1858 is a Gram-positive, spore-forming bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This strain belongs to the genus Streptomyces, which is renowned for its complex life cycle and ability to produce a variety of secondary metabolites. The Gram-positive nature of S. glauciniger indicates a thick peptidoglycan layer in its cell wall, a characteristic feature of this genus, which may contribute to its resilience in diverse environments.↵↵As a spore-forming organism, S. glauciniger has developed mechanisms for survival under adverse conditions, producing spores that can withstand environmental stressors. The aerobic requirement underlines its dependence on oxygen for metabolic processes, which is typical for many members of the Streptomyces genus, allowing for efficient energy production through aerobic respiration.↵↵Given these traits, S. glauciniger strain CGMCC 4.1858 may play a significant role in soil ecosystems, contributing to the cycling of organic matter and potentially influencing microbial community dynamics. Its ability to form spores not only facilitates its survival but also suggests a strategy for dispersal and colonization in varied ecological niches. Further research into this strain could illuminate its potential interactions within its environment, especially in relation to its production of bioactive compounds that may affect soil health and plant-microbe interactions." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila glaucinigra Gram-positive aerobic 25 mesophilic spore-forming 235986 FZOF00000000.1 Bac0012369 Belliella buryatensis strain 5C "Belliella buryatensis strain 5C is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 32.0°C and requires oxygen for growth, classifying it as an aerobic organism. This strain exhibits typical characteristics of the genus Belliella, which is known for its adaptation to specific environmental conditions.↵↵The Gram-negative nature of B. buryatensis strain 5C suggests a complex cell wall structure that may confer certain advantages in its ecological niche, such as resistance to specific antimicrobial agents or the ability to interact with other microbial communities. The rod shape of this bacterium is a common morphological trait among many aerobic bacteria, facilitating motility and nutrient uptake in various environments.↵↵The optimal growth temperature of 32.0°C indicates that B. buryatensis strain 5C may be well-suited to mesophilic environments, possibly including soil or freshwater habitats where temperatures commonly fluctuate around this range. Understanding the growth conditions and metabolic requirements of this strain could provide valuable insights into its ecological role, particularly in nutrient cycling or microbial interactions in its natural habitat.↵↵Overall, the traits of Belliella buryatensis strain 5C underscore its potential importance in aerobic processes, possibly contributing to the degradation of organic matter or influencing the dynamics of microbial communities in its environment. Further studies could elucidate its specific roles and interactions within these ecosystems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Belliella Belliella buryatensis Gram-negative rod non-motile aerobic 32 mesophilic 1500549 FZOK00000000.1 Bac0012370 Antarctobacter heliothermus strain DSM 11445 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Antarctobacter Antarctobacter heliothermus 74033 FZON00000000.1 Bac0012371 Geodermatophilus pulveris strain DSM 46839 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus pulveris 1564159 FZOO00000000.1 Bac0012372 Noviherbaspirillum sp. U15 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Noviherbaspirillum Noviherbaspirillum humi 1688639 FZOT00000000.1 Bac0012373 Granulicella rosea strain DSM 18704 "Granulicella rosea strain DSM 18704 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism, utilizing organic compounds as its energy source. This strain thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments, which may suggest its adaptation to specific ecological niches, such as those found in temperate habitats or aquatic systems.↵↵As an organotrophic chemotroph, G. rosea engages in the oxidation of organic substrates to derive energy, a trait that underscores its potential role in nutrient cycling within its environment. The aerobic nature of this microorganism signifies its dependence on oxygen for growth and energy production, further emphasizing its ecological niche in oxygen-rich environments.↵↵The combination of its Gram-negative status and rod shape places G. rosea within a significant group of bacteria that are often involved in diverse biogeochemical processes. Understanding the growth characteristics and metabolic capabilities of Granulicella rosea DSM 18704 can provide insights into its ecological interactions and potential applications in bioremediation or bioengineering, particularly in environments where organic matter is abundant. This strain highlights the complex interplay between microbial life and environmental conditions, serving as a model for studying microbial adaptation and functionality in cooler ecosystems." Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella rosea Gram-negative rod non-motile aerobic 16 organotroph; chemotroph psychrotolerant non-spore-forming 474952 FZOU00000000.1 Bac0012374 Rhodobacter megalophilus strain DSM 18937 "Rhodobacter megalophilus strain DSM 18937 is a Gram-negative, rod-shaped bacterium characterized by its tendency to form chains. This strain is non-spore-forming and exhibits metabolic versatility, functioning as both an aerobe and an anaerobe. It utilizes photosynthesis as its primary energy source, which highlights its ability to thrive in diverse environments, reflecting its adaptability to multiple habitats. Optimal growth occurs at a temperature of 25.0°C, suggesting a preference for moderate temperature ranges typical of many freshwater ecosystems.↵↵The combination of its photosynthetic capabilities and flexible oxygen requirements positions R. megalophilus DSM 18937 as a potentially significant player in biogeochemical cycles, particularly in environments where light availability and oxygen levels fluctuate. Its ability to grow in varying oxygen conditions may allow it to occupy ecological niches that are less accessible to strictly aerobic or anaerobic organisms, underscoring its ecological importance in microbial community dynamics and nutrient cycling within its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains non-spore-forming 1063 FZOV00000000.1 Bac0012375 Tropicimonas sediminicola strain DSM 29339 "Tropicimonas sediminicola strain DSM 29339 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics, thriving optimally at a temperature of 37.0°C. The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer and an outer membrane that may contribute to its environmental resilience and adaptability. The rod shape is a common morphological trait among various bacteria, which often influences their ecological roles and interactions within microbial communities.↵↵Given its aerobic requirement, T. sediminicola is likely to inhabit environments rich in oxygen, which may include surface waters, sediment layers, or other oxygenated habitats. The optimal growth temperature of 37.0°C suggests a preference for warm environments, potentially aligning with conditions found in human-associated or thermophilic ecosystems. ↵↵Understanding the specific ecological niches occupied by T. sediminicola could provide insights into its role in biogeochemical cycling, particularly in sediment environments where aerobic bacteria contribute to the degradation of organic matter and nutrient cycling. Research on this strain may further illuminate its interactions with other microorganisms and its potential contributions to sedimentary ecosystems, highlighting the significance of aerobic bacteria in maintaining environmental health and balance." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tropicimonas Tropicimonas sediminicola Gram-negative rod non-motile aerobic 37 mesophilic 1031541 FZOY00000000.1 Bac0012376 Bacillus sp. OK838 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. OK838 1882762 FZPG00000000.1 Bac0012377 Asanoa hainanensis strain CGMCC 4.5593 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Asanoa Asanoa hainanensis 560556 FZPH00000000.1 Bac0012378 Lachnospiraceae bacterium strain LC2019 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium No 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 1898203 FZRB00000000.1 Bac0012379 Prevotellaceae bacterium KH2P17 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotellaceae bacterium KH2P17 1945886 FZRE00000000.1 Bac0012380 Klebsiella oxytoca strain 06D021 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella grimontii 2058152 FZTC00000000.1 Bac0012381 Fusobacterium necrophorum DJ-2 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum 1441737 JAAH00000000.1 Bac0012382 Fructobacillus broussonetiae strain M2-14 "Fructobacillus broussonetiae strain M2-14 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells. This strain is classified as a heterotroph, indicating that it relies on organic compounds as its energy source, and it requires oxygen for growth, characterizing it as an aerobe.↵↵The habitat of Fructobacillus broussonetiae strain M2-14 is noted to be diverse, suggesting its potential adaptability to various environmental conditions. This adaptability may allow the strain to thrive in different ecological niches, although specific habitats have not been detailed. The combination of its aerobic metabolism and heterotrophic lifestyle may play a role in nutrient cycling within its environments, contributing to the overall microbial diversity and dynamics.↵↵Understanding the traits of Fructobacillus broussonetiae strain M2-14 can provide insights into its ecological interactions and potential applications in biotechnology, particularly in fermentation processes where aerobic conditions are prevalent." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles JAAMFK000000000 Bac0012383 Streptomyces sp. PRh5 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PRh5 1158056 JABQ00000000.1 Bac0012384 Prevotella sp. ICM33 ctgN13L785C24.3767 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. ICM33 1161412 JACD00000000.1 Bac0012385 Bibersteinia trehalosi Y31 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Bibersteinia Bibersteinia trehalosi 1261658 JACI00000000.1 Bac0012386 Sphingobium cupriresistens LL01 25410_21 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium cupriresistens 1132417 JACT00000000.1 Bac0012387 Petrotoga sp. SL27 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sp. SL27 1445612 JAIP00000000.1 Bac0012388 Aliarcobacter butzleri L353 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri 1447261 JAIU00000000.1 Bac0012389 Lysobacter capsici AZ78 unitig_4 "Lysobacter capsici AZ78 unitig_4 is a rod-shaped bacterium that has been isolated from chromium-contaminated environments, including water sources and the leaf surfaces of ready-to-eat lettuce plants. This microbe exhibits a notable adaptability to environments with elevated levels of chromium, suggesting a potential role in the bioremediation of contaminated water and agricultural systems. The presence of L. capsici AZ78 unitig_4 in chromium-contaminated plant water indicates its capacity to survive and possibly thrive in environments altered by anthropogenic activities.↵↵The isolation of this bacterium from the leaf of a lettuce plant highlights its potential interactions within agricultural ecosystems, particularly in relation to plant health and contamination effects. While the specific interactions between L. capsici AZ78 unitig_4 and the lettuce plant remain to be fully elucidated, its habitat preferences suggest a possible role in the microbial communities associated with plants grown in contaminated settings. Understanding the ecological roles and potential applications of L. capsici AZ78 unitig_4 could provide insights into its utility in bioremediation efforts, particularly in mitigating the effects of heavy metal contamination on crop production and food safety." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter capsici Rod chromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water 435897 JAJA00000000.2 Bac0012390 Mycolicibacterium aromaticivorans JS19b1 = JCM 16368 strain JS19b1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium aromaticivorans 318425 JALN00000000.2 Bac0012391 Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalihalobacillus Alkalihalobacillus alcalophilus 1218173 JALP00000000.1 Bac0012392 Petrotoga halophila DSM 16923 "Petrotoga halophila DSM 16923 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0 °C. This organism is non-spore-forming, which indicates a reliance on its vegetative state for survival and reproduction in its preferred environments. ↵↵The designation DSM 16923 suggests that it is a well-characterized strain, with the DSM (Deutsche Sammlung von Mikroorganismen und Zellkulturen) serving as a repository for microbial cultures. Given its adaptations to high temperatures and anaerobic conditions, P. halophila is likely to inhabit extreme environments, such as those found in hypersaline or hydrothermal settings, where it may contribute to biogeochemical cycles by participating in organic matter degradation.↵↵Understanding the metabolic capabilities of Petrotoga halophila can provide insights into its potential roles in environmental processes, particularly in the context of microbial ecology in extreme habitats. Its adaptation to high salinity and temperature may also indicate its utility in biotechnology, especially in processes that require thermophilic and halophilic microorganisms. Further studies are warranted to elucidate the specific biochemical pathways employed by this organism, which may reveal novel mechanisms of anaerobic metabolism relevant to its ecological niche." Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga halophila Gram-negative rod non-motile anaerobic 45 thermophilic non-spore-forming 1122953 JALY00000000.1 Bac0012393 Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter donghicola 1300350 JAMC00000000.1 Bac0012394 Pseudosulfitobacter pseudonitzschiae strain H3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pseudosulfitobacter Pseudosulfitobacter pseudonitzschiae 1402135 JAMD00000000.1 Bac0012395 Roseivivax isoporae LMG 25204 "Roseivivax isoporae LMG 25204 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This organism thrives optimally at a temperature of 37.0 °C, indicating a possible preference for environments that mirror physiological conditions found in warm-blooded hosts or certain ecological niches. ↵↵As a member of the Roseivivax genus, it likely shares traits with other species known for their involvement in various biogeochemical processes, although specific ecological roles for R. isoporae remain to be defined. The aerobic nature of this microbe suggests that it relies on oxygen for its metabolic processes, which may confer advantages in oxygen-rich environments. ↵↵The unique combination of its morphological and physiological traits positions Roseivivax isoporae LMG 25204 within a specific ecological context, potentially involved in nutrient cycling or interactions within microbial communities. Further research could elucidate its precise ecological niche and contributions to its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseivivax Roseivivax isoporae Gram-negative rod aerobic 37 mesophilic 1449351 JAME00000000.1 Bac0012396 Fusobacterium sp. CM1 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CM1 936561 JANB00000000.1 Bac0012397 Mannheimia granulomatis strain PKL10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia granulomatis 85402 JANJ00000000.1 Bac0012398 Alkalibacterium sp. AK22 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alkalibacterium Alkalibacterium sp. AK22 1229520 JANL00000000.1 Bac0012399 Streptococcus sp. BS21 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. BS21 1161414 JANT00000000.1 Bac0012400 Inquilinus limosus MP06 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Inquilinus Inquilinus limosus 1398085 JANX00000000.1 Bac0012401 Mycobacterium kansasii 732 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kansasii 1299327 JANZ00000000.1 Bac0012402 Mycobacterium kansasii 662 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kansasii 1299326 JAOA00000000.1 Bac0012403 Mycobacterium avium subsp. avium 2285 (R) "Mycobacterium avium subsp. avium 2285 (R) is a Gram-positive, rod-shaped bacterium characterized by its single-cell arrangement and microaerophilic oxygen requirements. This strain optimally thrives at a temperature of 37.0°C, aligning with typical mammalian host conditions, which suggests its potential association with warm-blooded hosts. As a chemoorganotroph, M. avium subsp. avium 2285 (R) utilizes organic compounds as its energy source, indicating a reliance on complex organic substrates for growth and metabolism.↵↵This microbe is primarily host-associated, which implies that it may inhabit specific niches within the host environment, possibly influencing its interactions with host physiology. The microaerophilic nature of this bacterium suggests that it is adapted to environments where oxygen levels are lower than atmospheric concentrations, potentially reflecting the conditions found within certain tissues or organs of its host.↵↵The unique combination of traits observed in Mycobacterium avium subsp. avium 2285 (R) may provide insights into its ecological adaptations and metabolic strategies. The ability to thrive in microaerophilic conditions at body temperature indicates a specialized role within its ecological niche, possibly contributing to its survival and persistence in host-associated environments. Such adaptations may also influence its interactions with host immune responses and its overall ecological dynamics within the microbiome of the host organism." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1299330 JAOE00000000.1 Bac0012404 Mycobacteroides abscessus subsp. bolletii 1513 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus 1299321 JAOJ00000000.1 Bac0012405 Mycobacterium sp. MAC_080597_8934 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. MAC_080597_8934 1335322 JAOS00000000.1 Bac0012406 Veillonella sp. ICM51a Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. ICM51a 936591 JAPX00000000.1 Bac0012407 Escherichia coli O128:H2 str. 2011C-3317 "Escherichia coli O128:H2 str. 2011C-3317 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain has an optimal growth temperature of 37.0°C, aligning with the physiological temperature of many host organisms. Escherichia coli O128:H2 str. 2011C-3317 is classified as a facultative anaerobe, indicating its capability to thrive in both aerobic and anaerobic environments, which enhances its adaptability within diverse biological niches.↵↵As a host-associated microbe, E. coli O128:H2 str. 2011C-3317 is likely to inhabit the intestines of warm-blooded animals, where it plays a role in various metabolic processes. Its facultative anaerobic nature suggests that it can utilize different metabolic pathways depending on the availability of oxygen, allowing it to outcompete other microorganisms in fluctuating environments. ↵↵Given its characteristics, E. coli O128:H2 str. 2011C-3317 may contribute to the dynamic microbial community within the gastrointestinal tract of its host, potentially influencing nutrient absorption and overall gut health. Understanding the specific traits of this strain can provide insights into its interactions within the host microbiome and its role in ecological balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1446581 JASU00000000.1 Bac0012408 Eubacterium sulci ATCC 35585 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Eubacterium [Eubacterium] sulci anaerobic 888727 JATQ00000000.1 Bac0012409 Streptococcus sp. SR1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. SR1 1161416 JATR00000000.1 Bac0012410 Streptococcus equi subsp. zooepidemicus Sz16 "Streptococcus equi subsp. zooepidemicus Sz16 is a Gram-positive coccus that typically forms pairs or chains. This nonsporulating bacterium is facultatively anaerobic, allowing it to thrive in varying oxygen conditions. It is primarily host-associated, indicating a close relationship with its animal hosts, which may include equines and other mammals.↵↵The coccoid shape and characteristic arrangement into pairs and chains are notable features of this subspecies, which is part of the larger Streptococcus genus known for its diverse roles in both health and disease. The facultative anaerobic nature of S. equi subsp. zooepidemicus Sz16 suggests its ability to adapt to different environments within the host, utilizing aerobic and anaerobic metabolic pathways as required.↵↵Understanding the traits of S. equi subsp. zooepidemicus Sz16 sheds light on its potential interactions within the host microbiome and its adaptability to various physiological conditions. This adaptability may play a significant role in its ecological niche, possibly influencing the dynamics of microbial communities in host-associated environments. Further research into its interactions with other microorganisms and the host immune response could provide deeper insights into its biological significance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Pairs-Chains Nonsporulating 1381085 JATW00000000.1 Bac0012411 Cellulosimicrobium funkei strain RVMD1 "Cellulosimicrobium funkei strain RVMD1 is a Gram-negative, rod-shaped bacterium that is characterized by its occurrence as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds, which aligns with its adaptability to various habitats. C. funkei strain RVMD1 is an aerobic organism, requiring oxygen for its metabolic processes, which suggests its potential involvement in the degradation of organic materials in oxygen-rich environments.↵↵The ability of C. funkei strain RVMD1 to thrive in multiple habitats underscores its ecological versatility, likely enabling it to exploit a range of organic substrates. This adaptability may play a significant role in nutrient cycling and organic matter decomposition in diverse ecosystems. Furthermore, its heterotrophic nature could contribute to its function in the microbiome of environments rich in cellulose, which may facilitate the breakdown of plant materials and promote soil health.↵↵Understanding the metabolic capabilities and ecological roles of C. funkei strain RVMD1 could provide insights into its potential applications in biotechnological processes, such as bioremediation or bioenergy production, where efficient organic matter degradation is crucial." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles JAUECY000000000 Bac0012412 Comamonas aquatica DA1877 out_83 "Comamonas aquatica DA1877 out_83 is a Gram-negative, rod-shaped bacterium that requires oxygen for growth, classifying it as an aerobic organism. This species is part of the Comamonas genus, which is known for its diverse metabolic capabilities and ecological versatility. The rod shape facilitates motility in aqueous environments, likely contributing to its adaptability in various habitats.↵↵As a Gram-negative microbe, Comamonas aquatica DA1877 out_83 possesses a characteristic outer membrane that includes lipopolysaccharides, which can play roles in environmental interactions and stress responses. The aerobic nature of this bacterium suggests its preference for environments rich in oxygen, which is typically found in surface waters or well-aerated soils.↵↵This strain may have implications for bioremediation processes, as members of the Comamonas genus are known to degrade a variety of organic compounds. Their metabolic versatility allows them to thrive in diverse ecological niches and may contribute to nutrient cycling within aquatic ecosystems. Understanding the specific ecological roles of Comamonas aquatica DA1877 out_83 could provide insights into its potential applications in environmental biotechnology, particularly in the treatment of wastewater or contaminated sites." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas aquatica Gram-negative rod motile aerobic 225991 JBOK00000000.1 Bac0012413 Actinomyces sp. ICM54 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. ICM54 936549 JDFI00000000.1 Bac0012414 Enterococcus mundtii CRL35 "Enterococcus mundtii CRL35 is a nonsporulating, cocci-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds for energy. This strain thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism, allowing it to survive in both aerobic and anaerobic environments. Enterococcus mundtii CRL35 is found in diverse habitats, which may include various environments such as fermented foods and the gastrointestinal tracts of animals.↵↵The facultative anaerobic nature of E. mundtii CRL35 suggests its versatility in adapting to fluctuating oxygen levels, a trait that may enhance its survival in competitive microbial communities. Furthermore, its ability to thrive at human body temperature indicates potential roles in human-associated environments, although further investigation is required to elucidate its specific interactions and contributions within these ecosystems.↵↵Given its adaptability and metabolic capabilities, Enterococcus mundtii CRL35 may play a significant role in nutrient cycling and microbial dynamics in its habitats, highlighting its potential importance in both natural and anthropogenic microbiomes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus mundtii Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1450511 JDFT00000000.1 Bac0012415 Dermabacter hominis 1368 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Dermabacter Dermabacter hominis microaerophile 29 mesophilic 1450519 JDRS00000000.1 Bac0012416 Sphingomonas sp. BHC-A PGA_954 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. BHC-A 322611 JDRU00000000.2 Bac0012417 Clostridium novyi A str. 4570 "Clostridium novyi A strain 4570 is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as single cells. This microbe is classified as a chemoorganotroph, deriving its energy from organic compounds, which underscores its role in organic matter degradation within its terrestrial habitat. As an obligate anaerobe, C. novyi A strain 4570 thrives in environments devoid of oxygen, which is characteristic of various anaerobic niches found in soil and decaying organic material.↵↵The physiological traits of C. novyi A strain 4570 highlight its adaptation to specific ecological conditions, where it contributes to the breakdown of complex organic substances. This metabolic capability not only aids in nutrient cycling within terrestrial ecosystems but also suggests potential interactions with other soil microorganisms. The presence of such anaerobic bacteria in soil environments is crucial for maintaining soil health and fertility, as they participate in essential processes such as fermentation and the mineralization of organic matter. Understanding the traits and ecological roles of C. novyi A strain 4570 provides insight into the complex dynamics of soil microbiomes and their contribution to terrestrial ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium novyi Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Terrestrial Free living Pairs - Singles 1444290 JDRX00000000.1 Bac0012418 Schleiferia thermophila str. Yellowstone Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Schleiferiaceae Schleiferia Schleiferia thermophila 1453500 JDSI00000000.1 Bac0012419 Candidatus Accumulibacter cognatus Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter cognatus 2954383 JDST00000000.2 Bac0012420 Komagataeibacter rhaeticus AF1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter rhaeticus 1432055 JDTI00000000.1 Bac0012421 Pseudoalteromonas lipolytica SCSIO 04301 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas lipolytica 1452721 JDVB00000000.1 Bac0012422 Finegoldia magna ALB8 "Finegoldia magna ALB8 is a Gram-positive coccus that thrives in anaerobic environments. This microbe is known to inhabit multiple habitats, although specific ecological niches have not been delineated in the existing literature. The cocciform morphology of F. magna ALB8 suggests a potential role in various microbial communities, particularly those characterized by low oxygen availability.↵↵As an anaerobic organism, F. magna ALB8 relies on fermentation processes for energy production, enabling it to survive and proliferate in environments where oxygen is limited. This metabolic strategy may contribute to its resilience and adaptability in diverse ecological settings, including those related to human microbiota, although its specific associations and functions within these communities remain to be fully elucidated.↵↵Finegoldia magna is part of a broader group of anaerobic bacteria that play essential roles in biogeochemical cycles and the maintenance of ecosystem stability. The ability of F. magna ALB8 to thrive in multiple habitats underscores its potential significance in various ecological interactions, including nutrient cycling and symbiotic relationships with other microorganisms. Further research is warranted to explore the ecological roles of F. magna ALB8 and its contributions to microbial diversity in anaerobic environments." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 1459804 JDVC00000000.1 Bac0012423 Frankia sp. BMG5.23 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. BMG5.23 683305 JDWE00000000.1 Bac0012424 Sorangium cellulosum strain So0011-07 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 56 JEMB00000000.1 Bac0012425 Sorangium cellulosum strain So0163 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 56 JEMD00000000.1 Bac0012426 Sorangium cellulosum strain So0007-03 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 56 JEME00000000.1 Bac0012427 Hylemonella gracilis str. Niagara R Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hylemonella Hylemonella gracilis 1458275 JEMG00000000.1 Bac0012428 Sulfitobacter mediterraneus strain 1FIGIMAR09 PM02_055 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter mediterraneus 83219 JEMU00000000.1 Bac0012429 Sphingobium sp. Ant17 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. Ant17 1461752 JEMV00000000.1 Bac0012430 Candidatus Accumulibacter regalis Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter regalis 522306 JEMY00000000.1 Bac0012431 Brucella anthropi strain W13P3 V5__48 "Brucella anthropi strain W13P3 V5__48 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. This strain exhibits characteristics typical of the Brucella genus, known for its ability to adapt to various environmental niches. The rod shape of Brucella anthropi W13P3 V5__48 suggests a structural rigidity that may facilitate its survival and reproduction in diverse terrestrial habitats.↵↵As an aerobic organism, this strain relies on oxygen for its growth, which may influence its distribution and ecological interactions within soil and other terrestrial ecosystems. The adaptation to aerobic conditions potentially allows for more efficient energy production through oxidative phosphorylation, contributing to its viability in environments where oxygen is readily available.↵↵Understanding the traits of Brucella anthropi strain W13P3 V5__48 not only enriches our knowledge of this specific strain but also highlights the broader ecological roles that members of the Brucella genus may play in terrestrial microbiomes. Their presence in soil ecosystems may contribute to nutrient cycling and interactions with other microbial communities, thereby influencing soil health and fertility. Further research could elucidate the specific ecological functions of this strain and its interactions with other soil-dwelling microbes." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella anthropi Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 529 JENZ00000000.1 Bac0012432 Acinetobacter baumannii 118362 "Acinetobacter baumannii 118362 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37.0°C and exhibits aerobic metabolism, utilizing organic compounds as a heterotrophic, chemoheterotrophic energy source. A. baumannii is known to inhabit a variety of environments, which contributes to its versatility and adaptability.↵↵Due to its broad habitat range, A. baumannii 118362 may be encountered in both natural and anthropogenic settings, including soil and water, as well as clinical environments. The strain's ability to grow in diverse conditions highlights its potential role in various ecological niches. Understanding the adaptability of A. baumannii 118362 to different habitats may provide insights into its survival strategies and interactions within microbial communities, particularly in environments where competition for resources is intense. This adaptability may also inform future research directions concerning its ecological impact and potential applications in biotechnology or bioremediation." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310618 JEWB00000000.1 Bac0012433 Acinetobacter baumannii 1295743 "Acinetobacter baumannii 1295743 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism thrives at an optimal temperature of 37.0°C and is classified as a chemoheterotroph, indicating that it relies on organic compounds as its energy source. A. baumannii 1295743 is an aerobic organism, requiring oxygen for its metabolic processes.↵↵The habitat of A. baumannii 1295743 is diverse, allowing it to occupy multiple environments, which may include soil, water, and various surfaces in human-made settings. This adaptability to different habitats may contribute to its resilience and survival in fluctuating conditions, potentially aiding its persistence in clinical and environmental contexts.↵↵Understanding the traits of A. baumannii 1295743 provides insight into its ecological versatility and positions it as a significant organism in microbiological studies. Its ability to thrive in diverse habitats while maintaining aerobic metabolism underscores the importance of environmental factors in shaping microbial communities and their dynamics. Further research into this strain may reveal additional aspects of its ecology and physiology, contributing to a broader understanding of A. baumannii as a whole." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310613 JEWH00000000.1 Bac0012434 Acinetobacter baumannii 625974 "Acinetobacter baumannii 625974 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates a heterotrophic lifestyle, specifically functioning as a chemoheterotroph. This organism thrives optimally at a temperature of 37.0°C, suggesting an adaptation to environments that approximate the body temperature of warm-blooded hosts. ↵↵As an aerobe, A. baumannii 625974 requires oxygen for its metabolic processes, enabling it to efficiently utilize organic compounds as energy sources in various habitats. The versatility of this species in inhabiting multiple environments indicates a remarkable adaptability, which may contribute to its persistence in both natural and artificial settings. ↵↵The ecological role of A. baumannii 625974 in nutrient cycling and its potential interactions within microbial communities can provide insights into its functional capabilities. Understanding these traits is important for elucidating its behavior in diverse ecosystems and may inform strategies for managing its presence in clinical and environmental contexts. This adaptability and metabolic versatility underscore the importance of A. baumannii 625974 in ecological studies and highlight its potential significance in microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310607 JEXD00000000.1 Bac0012435 Acinetobacter sp. 809848 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 809848 1310637 JEXG00000000.1 Bac0012436 Acinetobacter baumannii 99063 "Acinetobacter baumannii strain 99063 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism thrives optimally at 37.0°C and is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. A. baumannii 99063 is an aerobic microbe, requiring oxygen for its metabolic processes.↵↵The species A. baumannii is known for its versatility in occupying various habitats, which may include environmental sources as well as clinical settings. This adaptability is reflected in its broad ecological niches, allowing it to survive in diverse environments. The ability of A. baumannii 99063 to utilize various organic substrates as energy sources contributes to its metabolic flexibility and ecological resilience.↵↵In addition to its physiological traits, the prevalence of A. baumannii in multiple habitats suggests potential interactions with other microbial communities and possibly influences nutrient cycling within those ecosystems. The unique characteristics of strain 99063 may provide insights into the ecological roles of Acinetobacter species, particularly regarding their adaptability and survival strategies in fluctuating environments. Further studies could enhance our understanding of these dynamics and the implications for microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310630 JEXJ00000000.1 Bac0012437 Acinetobacter sp. 1542444 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 1542444 1310681 JEYA00000000.1 Bac0012438 Acinetobacter sp. 479375 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 479375 1310601 JEZN00000000.1 Bac0012439 Mycoplasma mycoides subsp. capri PG3 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides 1188246 JFAE00000000.1 Bac0012440 Xanthomonas axonopodis strain DSM 3585 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas axonopodis 53413 JFAQ00000000.1 Bac0012441 Candidatus Accumulibacter adjunctus Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter adjunctus 1454001 JFAX00000000.1 Bac0012442 Pseudomonas monteilii strain MO2 "Pseudomonas monteilii strain MO2 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph in aerobic environments, particularly in soil habitats. This strain utilizes organic compounds as its energy source, underscoring its role in nutrient cycling within terrestrial ecosystems. As an aerobe, Pseudomonas monteilii strain MO2 requires oxygen for its metabolic processes, which is typical of many soil-dwelling bacteria that contribute to the degradation of organic matter.↵↵The ability of this strain to survive and proliferate in soil suggests its potential involvement in various ecological functions, such as the breakdown of pollutants or the maintenance of soil health. Given its chemoheterotrophic lifestyle, Pseudomonas monteilii strain MO2 may play a crucial role in the decomposition of organic substrates, thereby influencing nutrient availability for other microorganisms and plants in the soil community. This highlights the importance of understanding such microbial traits, as they can provide insights into the ecological dynamics of soil microbiomes and their contributions to ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monteilii Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 76759 JFBC00000000.1 Bac0012443 Streptomyces toyocaensis strain NRRL 15009 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces toyocaensis 55952 JFCB00000000.1 Bac0012444 Mycoplasma capricolum subsp. capricolum 14232 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum 1188238 JFDO00000000.1 Bac0012445 Acinetobacter sp. 723929 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 723929 1310711 JFEX00000000.1 Bac0012446 Rhizobium leguminosarum bv. phaseoli CCGM1 "Rhizobium leguminosarum bv. phaseoli CCGM1 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a chemoheterotroph. This nonsporulating microorganism thrives in soil environments and exhibits an aerobic metabolism, requiring oxygen for its growth and energy production.↵↵As a member of the Rhizobium genus, R. leguminosarum bv. phaseoli is particularly known for its symbiotic relationship with leguminous plants, which allows it to fix atmospheric nitrogen, thereby enriching the soil with this essential nutrient. This interaction is vital for sustainable agricultural practices, as it enhances soil fertility and reduces the need for nitrogenous fertilizers.↵↵In addition to its role in nitrogen fixation, R. leguminosarum bv. phaseoli CCGM1 contributes to the complex soil microbiome, where it interacts with various other microorganisms. Its presence can influence the microbial community structure and dynamics, potentially enhancing the resilience and functionality of soil ecosystems. Understanding the traits of this bacterium not only elucidates its ecological role but also underscores its importance in agroecosystems, particularly in promoting sustainable crop production through natural nitrogen enrichment." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 1408223 JFGP00000000.1 Bac0012447 Photorhabdus aegyptia strain BA1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus aegyptia 2805098 JFGV00000000.1 Bac0012448 Caballeronia glathei strain DSM 50014 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia glathei aerobic 60547 JFHC00000000.1 Bac0012449 Caballeronia jiangsuensis strain MP-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia jiangsuensis 1458357 JFHF00000000.1 Bac0012450 Cupriavidus sp. SK-3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. SK-3 1470558 JFJV00000000.2 Bac0012451 Cupriavidus sp. SK-4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. SK-4 574750 JFJW00000000.1 Bac0012452 Thalassospira sp. MCCC 1A01428 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira sp. MCCC 1A01428 1470575 JFJZ00000000.1 Bac0012453 Thalassospira mesophila strain JCM 18969 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira mesophila 1293891 JFKA00000000.1 Bac0012454 Marivita cryptomonadis strain CL-SK44 "Marivita cryptomonadis strain CL-SK44 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic capabilities and thrives optimally at a temperature of 29.0°C. This strain is notable for its adaptation to aerobic environments, which suggests a reliance on oxygen for its energy production processes. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may influence its interactions with the environment and other organisms.↵↵The optimal growth temperature of 29.0°C positions M. cryptomonadis strain CL-SK44 within a range that is typically conducive to the growth of mesophilic organisms, potentially allowing it to inhabit moderately warm aquatic environments. This temperature preference may facilitate its survival in specific ecological niches where such conditions prevail.↵↵Given its morphological and physiological traits, M. cryptomonadis strain CL-SK44 may play a role in nutrient cycling within its habitat, particularly in the breakdown of organic materials in aerobic conditions. The presence of this organism in marine or freshwater ecosystems could contribute to the overall microbial diversity and functionality, highlighting its potential significance in maintaining the ecological balance within its environment. Further studies are warranted to elucidate its specific ecological roles and interactions with other microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Marivita Marivita cryptomonadis Gram-negative rod aerobic 29 mesophilic 505252 JFKD00000000.1 Bac0012455 Rickettsia buchneri strain ISO7 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia tamurae 334545 JFKF00000000.1 Bac0012456 Metamycoplasma hyosynoviae strain NPL3 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hyosynoviae 29559 JFKJ00000000.1 Bac0012457 Metamycoplasma hyosynoviae strain NPL1 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hyosynoviae 29559 JFKL00000000.1 Bac0012458 Paenibacillus sp. LC231 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. LC231 1120679 JFOM00000000.1 Bac0012459 Acinetobacter sp. 25977_8 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 25977_8 1310912 JFVJ00000000.1 Bac0012460 Acinetobacter baumannii 573719 "Acinetobacter baumannii strain 573719 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain demonstrates optimal growth at 37.0°C and relies on a heterotrophic, chemoheterotrophic metabolism for energy, utilizing organic compounds as both carbon and energy sources. A. baumannii is known for its adaptability to various habitats, which may include clinical settings and environmental niches, although the specific ecological contexts for strain 573719 remain unspecified.↵↵As an aerobic organism, A. baumannii requires oxygen for survival, positioning it within environments where oxygen is readily available. Its metabolic versatility allows it to thrive in diverse conditions, potentially contributing to its persistence in varied ecological niches. The ability to maintain viability across multiple habitats suggests that A. baumannii 573719 may play a role in the microbial dynamics of its environment, although further studies would be necessary to elucidate its specific ecological contributions. This adaptability emphasizes the importance of understanding the ecological and biological interactions of A. baumannii, particularly in the context of environmental resilience and potential implications for microbial community structure." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310759 JFYA00000000.1 Bac0012461 Acinetobacter sp. 826659 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 826659 1310764 JFYD00000000.1 Bac0012462 Pseudomonas sp. RIT288 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RIT288 1470589 JFYN00000000.1 Bac0012463 Microbacterium oleivorans strain RIT293 "Microbacterium oleivorans strain RIT293 is a Gram-positive bacterium characterized as an aerobic organism, primarily found in dust habitats. This strain, part of the Microbacterium genus, exhibits the typical cell wall structure associated with Gram-positive bacteria, which includes a thick peptidoglycan layer that may confer resilience in various environmental conditions. As an aerobe, M. oleivorans strain RIT293 relies on oxygen for its metabolic processes, indicating a potential capacity for utilizing aerobic respiration to derive energy from organic compounds present in its environment.↵↵The presence of M. oleivorans strain RIT293 in dust highlights its adaptability and potential role in the microbial community of terrestrial ecosystems. Dust, as a habitat, can serve as a reservoir for diverse microorganisms, facilitating their dispersal and survival across different environments. This strain's ability to thrive in such an environment suggests it may contribute to the cycling of nutrients and organic matter, providing insights into the ecological functions of microbial communities associated with airborne particles. The presence of this microbe in dust may also indicate its potential involvement in biogeochemical processes that are crucial for maintaining soil health and ecosystem stability." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oleivorans Positive Aerobe dust 273677 JFYO00000000.1 Bac0012464 Micrococcus luteus strain RIT304 "Micrococcus luteus strain RIT304 is a Gram-positive bacterium characterized by its coccoid shape and distinct tetrad arrangement. This strain exhibits strict aerobic metabolism, relying on oxygen for growth and energy production. Micrococcus luteus is commonly found in a variety of habitats, including soil, water, and on the surface of skin, indicating its adaptability to diverse environments.↵↵As a member of the Micrococcaceae family, M. luteus plays a role in the microbial communities of its habitats, contributing to the cycling of nutrients and potentially influencing the microbial dynamics in its surroundings. The presence of this strain in multiple habitats suggests its resilience and ability to thrive in varying environmental conditions.↵↵Interestingly, the tetrad arrangement of M. luteus strain RIT304 may facilitate its survival in aerobic environments by enhancing cell-to-cell communication and metabolic cooperation within localized microenvironments. This characteristic could provide insights into the organism's ecological role and interactions with other microbes, as well as its potential applications in biotechnology and environmental microbiology." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 JFYP00000000.1 Bac0012465 Micrococcus luteus strain RIT305 "Micrococcus luteus strain RIT305 is a Gram-positive, aerobic bacterium characterized by its cocci shape and distinctive arrangement in tetrads. This strain, belonging to a genus known for its resilience and adaptability, thrives in various habitats, which may include both natural and artificial environments. As an aerobe, Micrococcus luteus strain RIT305 requires oxygen for its metabolic processes, reflecting its ability to occupy niches where aerobic conditions prevail.↵↵The tetrad arrangement observed in this strain is a notable trait of the Micrococcus genus, which often contributes to its identification and classification in microbiological studies. The presence of this species in multiple habitats suggests a versatile ecological role, potentially involved in processes such as biogeochemical cycling or the degradation of organic matter. ↵↵Interestingly, the ability of Micrococcus luteus strain RIT305 to flourish in diverse environments may also hint at its potential utility in biotechnology or environmental applications, although specific uses have not been detailed. Overall, the physiological traits of this strain highlight its significance in the microbial landscape, contributing to our understanding of microbial diversity and ecological interactions." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 JFYQ00000000.1 Bac0012466 Janthinobacterium lividum strain RIT308 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium lividum 29581 JFYR00000000.1 Bac0012467 Delftia sp. RIT313 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia sp. RIT313 1468410 JFYT00000000.1 Bac0012468 Micrococcus luteus strain RIT324w "Micrococcus luteus strain RIT324w is a Gram-positive coccus known for its characteristic tetrad arrangement. This strain, like other members of the Micrococcus genus, is an aerobic organism, requiring oxygen for its metabolic processes. It has been isolated from various habitats, suggesting a versatile ecological adaptability.↵↵Micrococcus luteus is commonly found on human skin and in environmental samples, indicating its role in diverse ecosystems. Its ability to thrive in multiple environments highlights its significance in microbial ecology, particularly in the context of nutrient cycling and microbial community dynamics. The strain's tetrad formation may contribute to its resilience and adaptability, as this arrangement could facilitate survival in fluctuating conditions by enhancing cell-to-cell communication and resource sharing.↵↵Overall, the traits of Micrococcus luteus strain RIT324w underscore its potential importance in both natural and anthropogenic ecosystems, reflecting the broader ecological roles of Micrococcus species in maintaining microbial diversity and stability." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 JFYU00000000.1 Bac0012469 Exiguobacterium sp. RIT341 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. RIT341 1470592 JFYW00000000.1 Bac0012470 Pseudomonas sp. RIT357 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RIT357 1470593 JFYX00000000.1 Bac0012471 Sphingobium herbicidovorans NBRC 16415 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium herbicidovorans aerobic 1219045 JFZA00000000.2 Bac0012472 Paenirhodobacter enshiensis strain DW2-9 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paenirhodobacter Paenirhodobacter enshiensis 1105367 JFZB00000000.1 Bac0012473 Rhodomicrobium udaipurense JA643 "Rhodomicrobium udaipurense JA643 is a Gram-negative, rod-shaped bacterium characterized by its ability to form spores and its facultative aerobe/anaerobe metabolism, thriving optimally at a temperature of 29.0°C. This organism's Gram-negative cell wall structure contributes to its resilience in various environments, while its rod shape may facilitate motility and nutrient uptake, enhancing its adaptability. The capacity for sporulation allows R. udaipurense to survive unfavorable conditions by entering a dormant state, thereby ensuring its persistence in fluctuating environments.↵↵As a facultative aerobe/anaerobe, R. udaipurense can utilize oxygen when available but is also capable of anaerobic respiration, providing it with metabolic flexibility that may be advantageous in diverse ecological niches. This metabolic versatility allows R. udaipurense to occupy environments with varying oxygen levels, potentially contributing to its role in nutrient cycling within its habitat. The ability to adapt to both aerobic and anaerobic conditions may also indicate a significant ecological resilience, enabling this microbe to thrive in dynamic ecosystems where oxygen availability can change rapidly." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Rhodomicrobium Rhodomicrobium udaipurense Gram-negative rod facultative aerobe/anaerobe 29 mesophilic spore-forming 858455 JFZJ00000000.1 Bac0012474 Candidatus Acidianus copahuensis strain ALE1 Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Candidatus Acidianus copahuensis 1160895 JFZT00000000.1 Bac0012475 Bordetella holmesii CDC-H585-BH Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella holmesii microaerophile 1331206 JFZZ00000000.1 Bac0012476 Bacteroides fragilis str. 3774 T13 "Bacteroides fragilis strain 3774 (T13) is a Gram-negative, rod-shaped bacterium that predominantly exists in a single-cell arrangement. This microbe thrives optimally at 37.0°C, aligning with the physiological temperature of its host environment. As a chemoorganotroph, B. fragilis str. 3774 T13 utilizes organic compounds as its primary energy source, which is characteristic of many bacteria associated with host organisms. Importantly, this strain is classified as an anaerobe, indicating its metabolic processes occur in the absence of oxygen, a trait that allows it to colonize oxygen-depleted niches within host tissues.↵↵Bacteroides fragilis species are typically found in the gastrointestinal tracts of mammals, which suggests that strain 3774 T13 may play a role in the complex microbial ecosystem of the host. Its presence in a host-associated habitat underscores the potential for interactions with both the host's immune system and other microbial inhabitants. Understanding the specific traits of B. fragilis str. 3774 T13 could provide insights into its functional roles in nutrient metabolism and microbial community dynamics within the gut microbiome, highlighting its importance in maintaining gut health and homeostasis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339308 JGCR00000000.1 Bac0012477 Bacteroides fragilis str. DS-208 "Bacteroides fragilis str. DS-208 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a chemoorganotroph, deriving energy primarily from organic compounds, and is adapted to anaerobic environments, making it a strict anaerobe. The optimal growth temperature for B. fragilis str. DS-208 is 37.0°C, aligning with the physiological conditions found within mammalian hosts, where it is commonly associated.↵↵Bacteroides fragilis is well-known for its role in the human gut microbiome, contributing to the complex interactions within host-associated microbial communities. Given its anaerobic nature and reliance on organic substrates, this strain is likely to play a crucial role in the fermentation of complex carbohydrates, thereby influencing nutrient availability and metabolic processes within the gut environment. The presence of B. fragilis str. DS-208 in host-associated habitats underscores its potential contributions to digestive health and microbial homeostasis.↵↵Overall, the characteristics of Bacteroides fragilis str. DS-208 highlight its adaptation to a host-associated, anaerobic lifestyle, suggesting that it may be integral to the maintenance of gut health through its metabolic activities and interactions with other microorganisms in the intestinal ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339276 JGDE00000000.1 Bac0012478 Bacteroides fragilis str. J-143-4 "Bacteroides fragilis str. J-143-4 is a Gram-negative, rod-shaped anaerobic bacterium that primarily exists in a single-cell arrangement. This strain is adapted to a host-associated habitat, indicating its presence in various biological environments, likely within the gastrointestinal tract of mammals. As a chemoorganotroph, B. fragilis str. J-143-4 utilizes organic compounds as its energy source, reflecting its ability to thrive in nutrient-rich environments typically found in association with host organisms.↵↵The optimal growth temperature for this strain is approximately 37.0°C, which corresponds to the physiological temperature of warm-blooded hosts, further underscoring its adaptation to a host-associated lifestyle. B. fragilis is notable for its metabolic versatility, which enables it to exploit a range of organic substrates, contributing to its survival and colonization in the complex microbial communities of the gut.↵↵The ecological role of Bacteroides fragilis str. J-143-4 may extend beyond mere commensalism, as its metabolic activities can influence the host's nutrient absorption and immune responses. This interplay highlights the potential significance of this strain in maintaining gut homeostasis and its contributions to the overall microbiome dynamics. Understanding the specific traits of B. fragilis str. J-143-4 can enhance our knowledge of microbial interactions within host environments and their implications for health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339271 JGDH00000000.1 Bac0012479 Bacteroides fragilis str. S36L11 "Bacteroides fragilis strain S36L11 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits anaerobic metabolism. This strain thrives optimally at a temperature of 37.0°C, which corresponds closely to the average human body temperature, suggesting its adaptation to a host-associated habitat. As a chemoorganotroph, B. fragilis str. S36L11 derives energy from organic compounds, highlighting its role in the digestion of complex carbohydrates within the host's gastrointestinal tract.↵↵The anaerobic nature of B. fragilis str. S36L11 indicates its significant ecological niche in environments devoid of oxygen, such as the human colon, where it contributes to the intricate balance of microbial communities. This bacterium plays a crucial role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Understanding the specific traits of Bacteroides fragilis str. S36L11 enhances our knowledge of its functional contributions to gut microbiota and its potential influences on host metabolism and immune responses." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339327 JGDJ00000000.1 Bac0012480 Bacteroides fragilis str. 2-F-2 #4 "Bacteroides fragilis str. 2-F-2 #4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives optimally at a temperature of 37.0°C. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. Bacteroides fragilis str. 2-F-2 #4 is strictly anaerobic, meaning it does not require oxygen for growth and may even be inhibited by its presence. ↵↵This strain is associated with host environments, suggesting a symbiotic or commensal relationship with its host organisms, which may include various mammals. The ability of Bacteroides fragilis to thrive in anaerobic conditions within the host may contribute to its ecological niche in the gastrointestinal tract, where it plays a role in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host metabolism.↵↵The unique adaptation of Bacteroides fragilis str. 2-F-2 #4 to anaerobic conditions and its preference for organic substrates highlight its significance in the complex microbial communities of the host, potentially influencing both nutrient absorption and the overall health of the host organism. Understanding the metabolic pathways and interactions of this strain within the host could provide insights into its role in gut microbiome dynamics and health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339280 JGDM00000000.1 Bac0012481 Bacteroides fragilis str. 3-F-2 #6 "Bacteroides fragilis str. 3-F-2 #6 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in anaerobic environments. This strain exhibits a preference for an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat. As a chemoorganotroph, B. fragilis str. 3-F-2 #6 derives energy from organic compounds, making it well-suited for life in complex biological systems where organic substrates are readily available.↵↵Bacteroides fragilis is known for its significant presence in the human gut microbiota, contributing to various metabolic processes and playing a role in the maintenance of gut homeostasis. The anaerobic nature of this microbe indicates its adaptation to low-oxygen environments, such as the intestinal tract, where it participates in the fermentation of dietary fibers and other complex carbohydrates.↵↵Understanding the ecological role of Bacteroides fragilis str. 3-F-2 #6 provides valuable insights into its function in the microbiome, particularly regarding its contributions to nutrient metabolism and the potential modulation of host immune responses. The study of this strain may reveal further aspects of microbial interactions within the gut ecosystem, emphasizing the importance of anaerobic bacteria in human health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339335 JGDT00000000.1 Bac0012482 Bacteroides fragilis str. B1 (UDC16-1) "Bacteroides fragilis strain B1 (UDC16-1) is a Gram-negative, rod-shaped bacterium that exists primarily as single cells. This anaerobic microbe thrives at an optimal temperature of 37.0°C, aligning with the typical physiological conditions of its host-associated habitat. As a chemoorganotroph, B. fragilis str. B1 utilizes organic compounds as its energy source, reflecting its adaptation to environments rich in organic matter, such as the gastrointestinal tract of mammals.↵↵The strain's anaerobic nature suggests a metabolic reliance on fermentation processes rather than oxidative phosphorylation, which is consistent with its ecological niche within oxygen-depleted environments. These traits collectively indicate that Bacteroides fragilis str. B1 plays a significant role in the complex microbial communities associated with mammalian hosts, possibly contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial to host health.↵↵Understanding the specific adaptations of B. fragilis str. B1 within its anaerobic and host-associated environment can provide insights into its ecological role and interactions within the gut microbiome, potentially influencing both microbial diversity and host metabolism." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339273 JGDU00000000.1 Bac0012483 Bacteroides fragilis str. Korea 419 "Bacteroides fragilis str. Korea 419 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as an anaerobic chemoorganotroph, thriving in environments where oxygen is limited. Its optimal growth temperature is 37.0°C, which aligns with the physiological conditions of its host-associated habitat. ↵↵Bacteroides fragilis, as a member of the Bacteroidetes phylum, plays a significant role in the microbiota of the human gut, contributing to the breakdown of complex polysaccharides and fostering a balanced microbial ecosystem. The anaerobic nature of this strain suggests it is well-adapted to the oxygen-free environments found within the intestines, where it can utilize organic compounds for energy. ↵↵The ability of Bacteroides fragilis str. Korea 419 to thrive in association with host organisms highlights its potential importance in maintaining gut health and influencing host metabolism. The interactions between this bacterium and its host may provide insights into the complex dynamics of gut microbiota and their contributions to digestive processes and overall health. Understanding the specific traits of this strain could further elucidate its role in the microbe-host relationship, especially in terms of nutrient acquisition and metabolic functions within anaerobic environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339269 JGDW00000000.1 Bac0012484 Bacteroides fragilis str. 1007-1-F #3 "Bacteroides fragilis str. 1007-1-F #3 is a Gram-negative, rod-shaped bacterium typically found in a single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, indicative of its adaptation to host-associated environments, where it plays a significant role in the microbiota. As a chemoorganotroph, B. fragilis str. 1007-1-F #3 utilizes organic compounds as its energy source, which aligns with its anaerobic lifestyle, as this microbe does not require oxygen for growth.↵↵Bacteroides fragilis species are known for their prevalence in the gastrointestinal tract of mammals, where they contribute to the fermentation of complex carbohydrates and the maintenance of gut homeostasis. The strict anaerobic nature of this strain suggests that it may engage in metabolic processes that are crucial for nutrient absorption and the overall health of the host. Understanding the specific traits of B. fragilis str. 1007-1-F #3 can provide insights into its potential roles in microbial interactions within the gut microbiome, highlighting its importance in maintaining a balanced ecosystem in host-associated environments. Further research may elucidate the specific functions and interactions of this strain within the complex milieu of gut microbiota, possibly informing studies on gut health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339337 JGEB00000000.1 Bac0012485 Bacteroides fragilis str. 20793-3 "Bacteroides fragilis str. 20793-3 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives under anaerobic conditions. This strain, which optimally grows at 37.0°C, is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. ↵↵Bacteroides fragilis is commonly found in host-associated habitats, which suggests a symbiotic or commensal relationship with its host organisms. This association is significant, as members of the Bacteroides genus are known to play crucial roles in the gut microbiota, contributing to the digestion of complex carbohydrates and maintaining gut health. ↵↵The anaerobic nature of Bacteroides fragilis str. 20793-3 may reflect its adaptation to the oxygen-poor environments of the gastrointestinal tract, where it can outcompete aerobic organisms. Understanding the traits of this strain can provide insights into its functional contributions to the microbiome and its potential implications for host metabolism and immune response. The successful adaptation of Bacteroides fragilis to anaerobic niches underscores the evolutionary strategies employed by microbes to thrive in specific ecological contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339279 JGEF00000000.1 Bac0012486 Bacteroides fragilis str. S6L5 "Bacteroides fragilis str. S6L5 is a rod-shaped, Gram-negative bacterium that thrives in anaerobic environments, particularly associated with host organisms. This strain exhibits a singular arrangement of cells and is classified as a chemoorganotroph, utilizing organic compounds as its energy source. The optimal growth temperature for B. fragilis str. S6L5 is approximately 37.0°C, aligning with the physiological temperature of mammals, which suggests its adaptation to a host-associated habitat, likely within the gastrointestinal tract.↵↵The strict anaerobic nature of B. fragilis str. S6L5 indicates that it cannot survive in the presence of oxygen, which is a common characteristic of many gut microbiota that play pivotal roles in digestion and metabolism. This microbe is part of a broader community of anaerobes that contributes to the complex ecosystem of the human gut, participating in processes such as the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health.↵↵Understanding the traits of Bacteroides fragilis str. S6L5 can provide valuable insights into its ecological role in the microbiome, particularly in maintaining gut health and homeostasis. The relationship between this bacterium and its host underscores the intricate dependencies that define host-microbe interactions, highlighting its potential importance in digestive health and metabolic processes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339318 JGVC00000000.1 Bac0012487 Photorhabdus temperata subsp. temperata Meg1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus temperata 1393735 JGVH00000000.1 Bac0012488 Petrotoga sp. HKA.pet.4.5 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sp. HKA.pet.4.5 1473155 JGVM00000000.1 Bac0012489 Burkholderia sp. lig30 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. lig30 1192124 JGVW00000000.1 Bac0012490 Haematobacter massiliensis strain CCUG 47968 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Haematobacter Haematobacter massiliensis 195105 JGYG00000000.1 Bac0012491 Bifidobacterium biavatii DSM 23969 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium biavatii anaerobic 1437608 JGYN00000000.1 Bac0012492 Bifidobacterium bohemicum DSM 22767 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bohemicum anaerobic 1437606 JGYP00000000.1 Bac0012493 Bifidobacterium callitrichos DSM 23973 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium callitrichos 1437609 JGYS00000000.1 Bac0012494 Bifidobacterium pullorum subsp. gallinarum strain LMG 11586 "Bifidobacterium pullorum subsp. gallinarum strain LMG 11586 is a Gram-positive, non-sporulating rod-shaped bacterium that functions as a chemoheterotroph, relying on organic compounds for energy. This strain is part of the intestinal microflora of animals, indicating its role in the complex microbial community within the gastrointestinal tract. ↵↵Bifidobacteria are known for their association with the digestive health of their hosts and are often utilized for their potential prebiotic effects. Given that Bifidobacterium pullorum subsp. gallinarum strain LMG 11586 inhabits the intestinal environment, it may contribute to the fermentation of dietary fibers and the modulation of the gut microbiota, though specific interactions with other microbial species or direct benefits to host health require further investigation.↵↵The adaptation of this strain to the animal intestinal habitat underscores the importance of gut-associated microorganisms in nutrient metabolism and overall gut homeostasis, which may ultimately impact the health and well-being of the host organism. Further studies could elucidate the specific metabolic pathways utilized by this strain and its potential interactions with other members of the gut microbiome, highlighting its ecological role within this complex system." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pullorum Positive Rod No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 78448 JGYX00000000.1 Bac0012495 Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM "Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium. This subspecies is characterized by its ability to thrive in environments devoid of oxygen, which is typical for many members of this genus that are commonly found in the intestines of humans and other mammals. ↵↵As a member of the Bifidobacterium genus, B. catenulatum subsp. kashiwanohense plays a significant role in gut microbiota, contributing to the maintenance of intestinal health. The bacterium is likely involved in fermentative processes, utilizing complex carbohydrates and producing short-chain fatty acids, which are beneficial for gut health and can provide energy sources for intestinal epithelial cells. ↵↵Bifidobacterium species, including this subspecies, are often studied for their potential prebiotic and probiotic effects, highlighting their importance in the development of functional foods and dietary supplements aimed at enhancing gut microbiome diversity and health. ↵↵Understanding the specific ecological niches occupied by B. catenulatum subsp. kashiwanohense may provide insights into its interactions within the gut microbiome, suggesting that it may contribute to the overall metabolic activity and health-promoting functions of the intestinal microbiota in specific host environments." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium catenulatum Positive Anaerobe 1686 JGYY00000000.1 Bac0012496 Bifidobacterium longum subsp. suis strain LMG 21814 "Bifidobacterium longum subsp. suis strain LMG 21814 is a Gram-positive, non-sporulating rod-shaped bacterium that typically arranges itself in clusters, pairs, and singles. This strain is an anaerobe, thriving in environments devoid of oxygen, and demonstrates optimal growth at a temperature of 37.0°C, which aligns with the physiological conditions found within host-associated habitats. ↵↵As a member of the Bifidobacterium genus, this strain is expected to play a role in the gut microbiota of its host, contributing to digestive health and potentially influencing immune responses. The anaerobic nature of Bifidobacterium longum subsp. suis strain LMG 21814 suggests it may be involved in fermentation processes, aiding in the breakdown of carbohydrates within the gut environment. ↵↵The clustering behavior and nonsporulating trait of this strain may indicate its adaptation to stable environments, where survival under fluctuating conditions is not a primary concern. The presence of this bacterium in host-associated habitats underscores its potential symbiotic relationship with the host, highlighting the importance of such microbes in maintaining gut homeostasis. Further research into the specific interactions and functional roles of Bifidobacterium longum subsp. suis strain LMG 21814 within its ecological niche could provide valuable insights into its contributions to host health and microbiome dynamics." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 JGZA00000000.1 Bac0012497 Bifidobacterium magnum strain LMG 11591 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium magnum anaerobic 1692 JGZB00000000.1 Bac0012498 Bifidobacterium merycicum strain LMG 11341 "Bifidobacterium merycicum strain LMG 11341 is a Gram-positive, non-spore-forming rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain is naturally found in the rumen, a specialized stomach compartment of ruminant animals, where it plays a role in the complex microbial ecosystem involved in the digestion of fibrous plant materials.↵↵As a member of the Bifidobacterium genus, this strain is characterized by its fermentation capabilities, which contribute to the breakdown of carbohydrates and the production of short-chain fatty acids, important for host energy metabolism. The anaerobic nature of Bifidobacterium merycicum strain LMG 11341 indicates its adaptation to environments devoid of oxygen, reflecting its specialized ecological niche within the rumen. ↵↵The presence of this strain in the rumen microbiota suggests potential interactions with other microbial species, which may enhance digestive efficiency and contribute to the overall health of the host. Furthermore, the study of Bifidobacterium merycicum strain LMG 11341 can provide insights into the functional diversity of rumen microbiomes and the role of specific bacterial populations in the fermentation processes critical for ruminant nutrition." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium merycicum Gram-positive rod non-motile anaerobic 37 mesophilic rumen non-spore-forming 78345 JGZC00000000.1 Bac0012499 Bifidobacterium minimum strain LMG 11592 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium minimum anaerobic sewage 1693 JGZD00000000.1 Bac0012500 Bifidobacterium pullorum strain LMG 21816 "Bifidobacterium pullorum strain LMG 21816 is a Gram-positive, nonsporulating rod-shaped bacterium characterized as a chemoheterotroph, which indicates its reliance on organic compounds for energy and growth. This strain is part of the diverse microbial community found in the intestinal microflora of animals, suggesting its potential role in gut health and function.↵↵As a member of the Bifidobacterium genus, strain LMG 21816 may contribute to the maintenance of intestinal homeostasis, possibly by participating in the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut epithelial cells. The presence of such bacteria in the gut microbiome is crucial for various physiological processes, including digestion, immune modulation, and protection against pathogenic microorganisms.↵↵Research on Bifidobacterium species has often highlighted their beneficial properties, such as their ability to enhance gut barrier function and modulate the immune response. However, specific functionalities and interactions of strain LMG 21816 within the animal intestinal environment remain to be elucidated. Understanding the ecological role of this strain could provide insights into its potential applications in probiotics or as a model organism for studying gut microbiota dynamics." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pullorum Positive Rod No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 78448 JGZJ00000000.1 Bac0012501 Bifidobacterium ruminantium strain LMG 21811 "Bifidobacterium ruminantium strain LMG 21811 is a Gram-positive, non-spore-forming rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0 °C. This strain is part of the Bifidobacterium genus, which is known for its role in the gastrointestinal microbiota of various hosts. The anaerobic nature of B. ruminantium suggests its adaptation to environments with limited oxygen availability, such as the intestines of ruminants or other anaerobic habitats.↵↵As a member of the Bifidobacteria, this strain may contribute to the fermentation of carbohydrates, potentially producing short-chain fatty acids that can serve as energy sources for the host and play a role in gut health. The presence of B. ruminantium in specific ecosystems may indicate its involvement in the microbial community dynamics and metabolic processes that are crucial for nutrient cycling within those environments.↵↵Additionally, understanding the specific traits of Bifidobacterium ruminantium strain LMG 21811 can provide insights into its ecological interactions and functional capacities, particularly in relation to its role in the gut microbiome of herbivorous animals. This highlights the importance of studying such microorganisms to better comprehend their contributions to host health and microbial ecology." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium ruminantium Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 78346 JGZL00000000.1 Bac0012502 Bifidobacterium saguini DSM 23967 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium saguini anaerobic 1437607 JGZN00000000.1 Bac0012503 Bifidobacterium stellenboschense strain DSM 23968 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium stellenboschense anaerobic 762211 JGZP00000000.1 Bac0012504 Bifidobacterium adolescentis JCM 15918 strain DSM 24849 "Bifidobacterium adolescentis JCM 15918 strain DSM 24849 is a Gram-positive, nonsporulating rod-shaped bacterium that exists as single cells. This anaerobic microbe thrives optimally at 37.0°C and is primarily associated with host environments, suggesting a symbiotic relationship with its host organisms. ↵↵As a member of the Bifidobacterium genus, B. adolescentis is part of the diverse microbial communities found in the gastrointestinal tract, particularly in humans and other mammals, where it plays a significant role in gut health. Its anaerobic nature indicates that it thrives in low-oxygen environments, which aligns with its habitat within the intestines, where oxygen levels are minimal. ↵↵The presence of B. adolescentis in the gut microbiome has been linked to various beneficial health outcomes, including the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for maintaining gut health and immune function. Understanding the specific functional traits of the DSM 24849 strain can provide insights into its potential applications in probiotics and gut microbiota modulation. ↵↵Overall, the symbiotic role of Bifidobacterium adolescentis JCM 15918 in host-associated environments underscores the importance of anaerobic bacteria in maintaining the balance of the gut microbiome and supporting host health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 JGZQ00000000.1 Bac0012505 Bifidobacterium subtile strain LMG 11597 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium subtile anaerobic 77635 JGZR00000000.1 Bac0012506 Bifidobacterium porcinum strain LMG 21689 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium porcinum anaerobic 212365 JGZS00000000.1 Bac0012507 Bifidobacterium thermacidophilum subsp. thermacidophilum strain "Bifidobacterium thermacidophilum subsp. thermacidophilum strain is a Gram-positive, anaerobic bacterium that is notable for its ability to thrive in acidic environments. This strain is part of the Bifidobacterium genus, which is recognized for its health-promoting properties, particularly in the context of gut microbiota. The anaerobic nature of B. thermacidophilum subsp. thermacidophilum indicates that it does not require oxygen for growth, instead relying on fermentation processes for energy production. ↵↵The organism's ability to withstand low pH conditions suggests that it may play a significant role in the fermentation of dietary fibers and carbohydrates within the gastrointestinal tract, contributing to the production of short-chain fatty acids. These metabolites are known to have various beneficial effects on host health, including modulation of gut microbiota composition and enhancement of the intestinal barrier function.↵↵Research on the specific metabolic pathways employed by B. thermacidophilum subsp. thermacidophilum in these acidic conditions could provide further insights into its potential applications in probiotic formulations. Additionally, understanding the strain's interactions with other gut microbes and its functional contributions to the gut ecosystem may elucidate its role in promoting a balanced microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium thermacidophilum positive anaerobic 246618 JGZT00000000.1 Bac0012508 Bifidobacterium tsurumiense strain JCM 13495 "Bifidobacterium tsurumiense strain JCM 13495 is a Gram-positive, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. This strain is part of the Bifidobacterium genus, which is commonly associated with the gastrointestinal tracts of various mammals, where it plays a crucial role in maintaining gut health. ↵↵As an anaerobe, B. tsurumiense strain JCM 13495 is adapted to environments devoid of oxygen, which is characteristic of the intestinal microbiota. The ability of this strain to flourish in such conditions suggests it may contribute to the fermentation of dietary fibers and the production of short-chain fatty acids, beneficial for host metabolism and health. ↵↵Research into B. tsurumiense and its specific metabolic capabilities may further elucidate its role in the gut microbiome, particularly in relation to digestion and nutrient absorption. Understanding this strain could also inform probiotic applications and the development of functional foods aimed at enhancing gut health. The unique adaptation of B. tsurumiense to anaerobic environments underscores the diverse strategies employed by gut bacteria to thrive in complex microbial communities." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium tsurumiense Gram-positive rod anaerobic 37 mesophilic 356829 JGZU00000000.1 Bac0012509 Bifidobacterium thermophilum strain JCM 1207 "Bifidobacterium thermophilum strain JCM 1207 is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium. As a member of this genus, it is characterized by its ability to thrive in anaerobic environments, which is indicative of its metabolic adaptations that favor fermentation processes. The strain is of particular interest for its potential applications in food science and probiotics, given the genus's association with beneficial effects on gut health.↵↵Bifidobacterium thermophilum strain JCM 1207 displays typical traits of bifidobacteria, including a rod-shaped morphology and the capability to ferment a variety of carbohydrates, although specific fermentation profiles for this strain are not detailed in the provided traits. As an anaerobe, it requires an oxygen-free environment for optimal growth and metabolic activity, which suggests its ecological niche may primarily involve anaerobic habitats, such as the gastrointestinal tracts of mammals or specific fermented food products.↵↵The unique ecological insight into Bifidobacterium thermophilum strain JCM 1207 lies in its potential role in the fermentation processes within anaerobic ecosystems, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities can have significant implications for host health, particularly in enhancing nutrient absorption and maintaining gut microbiota balance. Further research could elucidate its specific contributions to microbial community dynamics in anaerobic environments." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium thermophilum Positive Anaerobe 33905 JGZV00000000.1 Bac0012510 Deinococcus phoenicis strain 1P10ME Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus phoenicis 1476583 JHAC00000000.1 Bac0012511 Bacteroides fragilis str. S23L17 "Bacteroides fragilis strain S23L17 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This anaerobic organism thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within the human body, its primary habitat. As a chemoorganotroph, B. fragilis S23L17 utilizes organic compounds as its energy source, reflecting its adaptation to a host-associated environment where it likely engages in complex interactions with the host microbiome.↵↵Bacteroides fragilis is known for its role in the human gut, where it contributes to the fermentation of complex carbohydrates and the production of short-chain fatty acids, which are important for maintaining gut health. The presence of strain S23L17 in this specific microbial community may provide insights into its functional contributions, including potential modulation of immune responses or metabolic interactions with other gut microbes. Understanding the traits of this strain could enhance our knowledge of bacterial diversity in the human microbiome and its implications for health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339329 JHEF00000000.1 Bac0012512 Thioclava dalianensis strain DLFJ1-1 "Thioclava dalianensis strain DLFJ1-1 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and thrives optimally at a temperature of 29.0°C. The organism's Gram-negative status indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may confer specific advantages in its habitat, such as resistance to certain antibiotics and the ability to interact with a variety of environmental substances.↵↵As an aerobic organism, Thioclava dalianensis strain DLFJ1-1 relies on oxygen for its metabolic processes, suggesting that it is likely found in environments where oxygen is readily available. This trait may position it within specific ecological niches where aerobic conditions prevail, such as coastal marine habitats or oxygen-rich freshwater environments.↵↵The optimal growth temperature of 29.0°C suggests a preference for moderately warm environments, which may reflect its adaptation to specific thermal conditions in its native habitat. Understanding the growth characteristics and environmental preferences of Thioclava dalianensis strain DLFJ1-1 can provide insights into its potential roles in biogeochemical cycles, particularly in the breakdown of organic matter and nutrient cycling in aerobic ecosystems. Further studies could elucidate its interactions with other microorganisms and its contributions to the overall dynamics of microbial communities in its environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava dalianensis Gram-negative rod non-motile aerobic 29 mesophilic 1185766 JHEH00000000.1 Bac0012513 Escherichia coli O121:H19 str. 2010C-3609 "Escherichia coli O121:H19 str. 2010C-3609 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli O121:H19 str. 2010C-3609 has the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels within its ecological niche.↵↵The host-associated nature of this strain suggests a potential role in the gut microbiota, where it may contribute to the complex community dynamics and metabolic functions of the gastrointestinal tract. Given the broad spectrum of metabolic capabilities that E. coli strains exhibit, including fermentation and the utilization of various substrates, E. coli O121:H19 str. 2010C-3609 may play a significant role in nutrient absorption and energy production within its host. ↵↵Understanding the traits of this specific strain can provide insights into its interactions within the microbiome and its potential contributions to host health, highlighting the intricate relationships between microbial inhabitants and their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1446560 JHFM00000000.1 Bac0012514 Campylobacter mucosalis strain DSM 21682 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter mucosalis microaerophile 202 JHQQ00000000.1 Bac0012515 Acinetobacter sp. ETR1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ETR1 1485002 JICM00000000.1 Bac0012516 Escherichia coli 2-005-03_S4_C3 "Escherichia coli 2-005-03_S4_C3 is a Gram-negative, rod-shaped bacterium that typically exhibits cell arrangements in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in warm-blooded hosts. As a facultative anaerobe, E. coli 2-005-03_S4_C3 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to adapt to varying oxygen levels within its host-associated habitat.↵↵The strain's Gram-negative status indicates the presence of an outer membrane containing lipopolysaccharides, which is characteristic of the family Enterobacteriaceae. These structural features may play a role in the bacterium's interactions with the host's immune system, although specific pathogenicity traits or interactions are not detailed in the provided data.↵↵Given its habitat and metabolic versatility, E. coli 2-005-03_S4_C3 may contribute to the complex microbial communities within its host, influencing nutrient cycling and microbial dynamics. This adaptability suggests potential roles in maintaining gut homeostasis, where it could participate in fermentation processes or compete with other microorganisms for resources, highlighting the ecological importance of this strain within its specific niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444258 JJLJ00000000.1 Bac0012517 Flagellimonas olearia strain Th120 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas olearia 552546 JJMP00000000.1 Bac0012518 Streptomyces olindensis strain DAUFPE 5622 131 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces olindensis 358823 JJOH00000000.1 Bac0012519 Methanosarcina mazei strain 2.F.A.2.3 "Methanosarcina mazei strain 2.F.A.2.3 is a coccoid, nonsporulating anaerobic microorganism that thrives optimally at a temperature of 30.0°C. This strain is a lithotroph, meaning it derives its energy from inorganic compounds, which suits its adaptability to a variety of anaerobic environments. ↵↵As a member of the Methanosarcina genus, this strain is capable of methanogenesis, the biological production of methane, which occurs in diverse habitats where organic matter decomposition is prevalent. The ability to utilize various substrates for energy allows Methanosarcina mazei strain 2.F.A.2.3 to play a significant role in the carbon cycle, particularly in anaerobic ecosystems such as wetlands, sediments, and the guts of ruminants, where it contributes to methane emissions.↵↵The nonsporulating nature of this strain suggests a reliance on stable environmental conditions for survival and growth, which is consistent with its optimal temperature preference. Furthermore, the capacity to function as a lithotroph highlights its potential utility in biotechnological applications aimed at biogas production and waste treatment. Overall, Methanosarcina mazei strain 2.F.A.2.3 exemplifies the intricate interplay of energy acquisition and environmental adaptation in anaerobic microorganisms, emphasizing their importance in both ecological and industrial contexts." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJOR00000000.1 Bac0012520 Methanosarcina mazei strain 2.F.A.2.4 "Methanosarcina mazei strain 2.F.A.2.4 is a coccoid, nonsporulating anaerobic microorganism that exhibits lithotrophic metabolism and thrives optimally at a temperature of 30.0 °C. This strain is capable of utilizing inorganic compounds as energy sources, which positions it within a unique ecological niche where it plays a role in the biogeochemical cycling of elements, particularly carbon and sulfur. The ability of strain 2.F.A.2.4 to thrive in diverse habitats suggests its adaptability and potential involvement in various anaerobic environments, such as sediments, wetlands, or the digestive tracts of certain organisms.↵↵As a lithotroph, Methanosarcina mazei strain 2.F.A.2.4 contributes to the reduction of carbon compounds through methanogenesis, thereby influencing methane production in anaerobic conditions. This activity is crucial for understanding the dynamics of methane emissions in ecosystems and could inform research on biotechnological applications, such as biogas production or bioremediation strategies in anaerobic environments. The strain's specific temperature preference further indicates its potential for optimization in industrial applications where controlled environments are established for microbial growth. Overall, Methanosarcina mazei strain 2.F.A.2.4 exemplifies the intricate balance of microbial life and its contributions to environmental processes." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJOS00000000.1 Bac0012521 Methanosarcina mazei strain 2.F.T.0.2 "Methanosarcina mazei strain 2.F.T.0.2 is a coccoid, nonsporulating methanogenic archaeon that thrives in anaerobic environments, with an optimal growth temperature of 30.0 °C. This organism is classified as a lithotroph, indicating its ability to utilize inorganic compounds as a primary energy source, which is characteristic of many methanogens that play crucial roles in carbon cycling. Methanosarcina mazei strain 2.F.T.0.2 can inhabit various habitats, suggesting a versatile adaptability to diverse anaerobic conditions.↵↵The nonsporulating nature of this strain implies that it does not form spores as a survival mechanism under adverse conditions, which is a notable trait among many members of the Methanosarcina genus. Instead, it likely relies on its metabolic capabilities to thrive in stable anaerobic environments. This strain's lithotrophic metabolism emphasizes its ecological role in biogeochemical processes, particularly in the conversion of organic and inorganic substrates to methane, a significant greenhouse gas.↵↵Overall, Methanosarcina mazei strain 2.F.T.0.2 exemplifies the metabolic diversity of methanogenic archaea and highlights their potential contributions to anaerobic digestion processes, which are essential for the degradation of organic matter in various ecosystems. Understanding this strain's specific traits further informs our knowledge of methane production and its implications for both energy recovery and environmental sustainability." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJOT00000000.1 Bac0012522 Methanosarcina mazei strain 2.F.T.2.6 "Methanosarcina mazei strain 2.F.T.2.6 is a nonsporulating, cocci-shaped anaerobic bacterium that optimally thrives at a temperature of 30.0°C. This strain is characterized as a lithotroph, indicating its ability to derive energy from inorganic compounds. Methanosarcina mazei is known to inhabit a variety of environments, showcasing its adaptability and potential role in different ecological niches.↵↵As an anaerobe, Methanosarcina mazei strain 2.F.T.2.6 contributes to the biogeochemical cycling of carbon by utilizing substrates such as carbon dioxide and hydrogen to produce methane, a process integral to methanogenic pathways. The ability of this strain to thrive in diverse habitats suggests a significant ecological role in anaerobic environments, including sediments and wetlands, where it can participate in organic matter degradation and influence local carbon fluxes.↵↵The metabolic versatility of Methanosarcina mazei strain 2.F.T.2.6, coupled with its nonsporulating nature, highlights its potential resilience in fluctuating environmental conditions, making it an important organism for studying methane production and its implications for climate change and energy production." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJOU00000000.1 Bac0012523 Methanosarcina mazei strain 3.F.A.1A.3 "Methanosarcina mazei strain 3.F.A.1A.3 is a coccoid, nonsporulating methanogenic archaeon that thrives optimally at a temperature of 30.0°C and operates as a lithotroph, utilizing inorganic substrates for energy. This strain is obligately anaerobic, indicating its dependence on an oxygen-free environment for growth and metabolism.↵↵The habitat of Methanosarcina mazei strain 3.F.A.1A.3 is diverse, suggesting its ability to adapt to various anaerobic conditions, potentially including environments such as sediments, wetlands, and the digestive systems of certain animals. The strain's lithotrophic nature allows it to play a crucial role in biogeochemical cycles, particularly in the conversion of carbon compounds into methane, a process that can significantly influence methane emissions in anaerobic ecosystems.↵↵Given its metabolic capabilities and habitat versatility, Methanosarcina mazei strain 3.F.A.1A.3 may contribute to the degradation of organic matter in anaerobic environments, enhancing nutrient cycling and supporting the balance of microbial communities in its native habitats. This functional potential highlights the importance of methanogenic archaea in global carbon cycling and their ecological significance in maintaining the health of anaerobic ecosystems." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPB00000000.1 Bac0012524 Methanosarcina mazei strain 3.F.A.1B.1 "Methanosarcina mazei strain 3.F.A.1B.1 is a coccoid, nonsporulating archaeon that thrives as a lithotrophic anaerobe, with an optimal growth temperature of 30°C. This strain is capable of utilizing various inorganic compounds as energy sources, reflecting its adaptability to diverse environments. The absence of sporulation suggests that it relies on other survival mechanisms to endure unfavorable conditions rather than forming spores.↵↵Habitat studies indicate that Methanosarcina mazei strain 3.F.A.1B.1 can inhabit multiple ecological niches, although the specifics of these habitats are not defined in the available data. Its lithotrophic lifestyle is significant, as it plays an essential role in biogeochemical cycles, particularly in the conversion of carbon compounds in anaerobic environments. ↵↵The ability of this strain to thrive in various habitats suggests a potential for involvement in methane production processes, which can have implications for carbon cycling in its ecological contexts. Understanding the metabolic pathways and environmental interactions of Methanosarcina mazei strain 3.F.A.1B.1 can provide insights into its role in methane emissions and its impact on global climate processes." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPC00000000.1 Bac0012525 Methanosarcina mazei strain 3.F.A.2.3 "Methanosarcina mazei strain 3.F.A.2.3 is a coccoid, nonsporulating methanogenic archaeon that functions as a lithotroph, utilizing inorganic compounds as its energy source. This strain thrives optimally at a temperature of 30.0°C and is classified as an anaerobe, indicating its growth and metabolic processes occur in environments devoid of oxygen. ↵↵Methanosarcina mazei strain 3.F.A.2.3 has been identified in multiple habitats, suggesting its adaptability to diverse anaerobic environments. Its lithotrophic metabolism allows it to play a crucial role in the carbon cycle by converting carbon dioxide and hydrogen into methane, a process significant for biogeochemical cycling in anaerobic ecosystems. ↵↵The ability of this strain to inhabit various anaerobic environments highlights its ecological importance, particularly in the context of energy production and greenhouse gas emissions. Understanding the metabolic pathways of Methanosarcina mazei strain 3.F.A.2.3 may provide insights into potential biotechnological applications, such as biogas production and the management of methane emissions from anaerobic environments." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPE00000000.1 Bac0012526 Methanosarcina mazei strain 3.F.A.2.6 "Methanosarcina mazei strain 3.F.A.2.6 is a coccoid, nonsporulating archaeon characterized as a lithotrophic anaerobe that thrives optimally at 30.0 °C. This strain is part of the Methanosarcina genus, which is known for its versatile metabolic capabilities, particularly in utilizing a variety of substrates for energy production. As a lithotroph, Methanosarcina mazei strain 3.F.A.2.6 can harness inorganic compounds, making it significant in biogeochemical cycles, particularly in methanogenesis.↵↵The habitat of this strain is diverse, suggesting its adaptability to various anaerobic environments. Such environments may include anaerobic digesters, sediments, or other locations where organic material is decomposed in the absence of oxygen. The ability to thrive in multiple habitats highlights the ecological importance of Methanosarcina mazei strain 3.F.A.2.6 in contributing to methane production, a key process in carbon cycling and energy flow in ecosystems.↵↵An interesting biological insight is that the metabolic processes employed by Methanosarcina mazei strain 3.F.A.2.6 may play a pivotal role in the management of organic waste, offering potential applications in biotechnology for renewable energy production through biogas generation. These traits underscore the importance of understanding anaerobic microbes in environmental and industrial contexts." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPG00000000.1 Bac0012527 Methanosarcina mazei strain 3.F.T.1A.4 "Methanosarcina mazei strain 3.F.T.1A.4 is a coccoid, nonsporulating anaerobic microorganism that thrives optimally at 30.0°C and derives energy as a lithotroph. This unique strain is part of a diverse group of methanogenic archaea known for their ability to produce methane through various metabolic pathways. As an anaerobe, Methanosarcina mazei strain 3.F.T.1A.4 plays a critical role in anaerobic environments, contributing to carbon cycling and energy flow in habitats such as sediments, wetlands, and the gastrointestinal tracts of animals.↵↵The strain's lithotrophic lifestyle indicates that it utilizes inorganic compounds as energy sources, a trait that underscores its ecological flexibility and adaptability across multiple environments. This ability to harness different substrates for energy potentially allows Methanosarcina mazei strain 3.F.T.1A.4 to occupy a variety of ecological niches, where it can thrive in the absence of oxygen. The metabolic processes of this strain not only contribute to methane production but also affect the overall biogeochemical cycling of carbon in its habitats. Thus, Methanosarcina mazei strain 3.F.T.1A.4 exemplifies the intricate balance of microbial life in anaerobic ecosystems, highlighting its significance in both environmental microbiology and potential biotechnological applications related to methane production." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPK00000000.1 Bac0012528 Methanosarcina mazei strain 3.F.T.2.1 "Methanosarcina mazei strain 3.F.T.2.1 is a nonsporulating, coccoid-shaped anaerobic microorganism that thrives optimally at 30.0°C. As a lithotroph, this strain utilizes inorganic compounds as an energy source, which positions it within a unique ecological niche where it contributes to the biogeochemical cycling of elements, particularly in anaerobic environments. ↵↵Habitat versatility is a notable trait of this strain, indicating its potential presence in a variety of anaerobic ecosystems, such as freshwater sediments, wetlands, or even within the gastrointestinal tracts of certain animals. The ability to thrive in multiple habitats underscores the adaptability of Methanosarcina mazei strain 3.F.T.2.1 to different environmental conditions, which may influence its metabolic pathways and interactions with other microbial communities.↵↵The anaerobic nature of this microorganism suggests its role in methane production through methanogenesis, a critical process in carbon cycling that contributes to the global methane budget. This process not only has implications for energy production but also for understanding the dynamics of greenhouse gas emissions in various environments. Overall, Methanosarcina mazei strain 3.F.T.2.1 exemplifies a specialized organism that plays a vital role in anaerobic ecosystems, facilitating energy flow and nutrient cycling." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPL00000000.1 Bac0012529 Methanosarcina mazei strain 3.H.A.1A.2 "Methanosarcina mazei strain 3.H.A.1A.2 is a coccoid, nonsporulating microorganism that thrives in anaerobic environments and optimally grows at a temperature of 30.0°C. This strain utilizes lithotrophic metabolism, indicating its capacity to derive energy from inorganic compounds, which is characteristic of certain methanogenic archaea. As an anaerobe, Methanosarcina mazei strain 3.H.A.1A.2 occupies diverse habitats where oxygen is absent, suggesting its adaptation to various ecological niches that support anaerobic microbial communities.↵↵The strain's coccoid morphology may contribute to its survival and functionality in anaerobic environments, facilitating interactions with other microorganisms and the utilization of available substrates. The ability to grow optimally at 30.0°C suggests a preference for moderate thermal conditions, potentially aligning with habitats such as sediments in freshwater bodies or anaerobic digesters where organic matter decomposition occurs. ↵↵This strain's lithotrophic nature underscores its ecological role in the biogeochemical cycles of carbon and nitrogen, as it can participate in methanogenesis, converting carbon substrates into methane—a potent greenhouse gas. Understanding the metabolic capabilities of Methanosarcina mazei strain 3.H.A.1A.2 not only enhances knowledge of microbial diversity in anaerobic ecosystems but also informs potential applications in biotechnological processes such as biogas production and waste treatment." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPN00000000.1 Bac0012530 Methanosarcina mazei strain 3.H.A.2.6 "Methanosarcina mazei strain 3.H.A.2.6 is a nonsporulating coccoid archaeon that thrives in anaerobic environments, utilizing lithotrophic metabolism for energy. This strain exhibits optimal growth at a temperature of 30.0°C, indicating a mesophilic nature. As an anaerobe, it contributes to various ecological processes by participating in methane production, a crucial aspect of the global carbon cycle. ↵↵Methanosarcina mazei is known for its versatility in habitat, being able to inhabit diverse anaerobic environments, which may include freshwater sediments, wetlands, and the digestive tracts of ruminants. This adaptability allows the strain to play significant roles in both natural ecosystems and engineered biotechnological applications, such as biogas production. ↵↵The utilization of inorganic compounds as energy sources positions this strain as a key player in nutrient cycling within anaerobic niches. Its lithotrophic lifestyle not only underscores its importance in methanogenic pathways but also hints at potential interactions with other microbial communities that may share its habitat, contributing to complex microbial consortia that enhance ecosystem functioning." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPR00000000.1 Bac0012531 Methanosarcina mazei strain 3.H.M.2.7 "Methanosarcina mazei strain 3.H.M.2.7 is a coccoid, nonsporulating archaeon that thrives as an anaerobe, utilizing lithotrophic metabolism for energy. This strain is optimally active at a temperature of 30.0°C, which suggests a preference for moderately warm environments. Methanosarcina mazei strains, including 3.H.M.2.7, are known for their versatile metabolic pathways, enabling them to inhabit various anaerobic habitats where they play a significant role in the biogeochemical cycling of carbon and nitrogen.↵↵As a lithotroph, strain 3.H.M.2.7 likely utilizes inorganic compounds as an energy source, which contributes to its ecological niche in anaerobic environments, such as sediment of freshwater bodies or anaerobic digestion systems. The ability to thrive in multiple habitats indicates a potential adaptability to different environmental conditions, which can be critical for survival in fluctuating ecosystems. This adaptability may also facilitate its role in methane production, a process of great importance in both natural and engineered environments.↵↵Understanding the metabolic capabilities and habitat preferences of Methanosarcina mazei strain 3.H.M.2.7 enhances our knowledge of microbial contributions to energy flow and nutrient cycling in anaerobic ecosystems. Its presence in diverse habitats underscores the ecological significance of methanogenic archaea in maintaining the balance of carbon compounds in anaerobic environments." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPX00000000.1 Bac0012532 Methanosarcina mazei strain 3.H.T.1A.2 "Methanosarcina mazei strain 3.H.T.1A.2 is a coccoid, nonsporulating archaeon characterized as a lithotrophic anaerobe with an optimal growth temperature of 30.0°C. This strain is capable of utilizing various energy sources, indicating metabolic versatility within its habitat. Found in diverse environments, Methanosarcina mazei contributes significantly to anaerobic digestion processes, potentially playing a role in biogeochemical cycles, particularly in methanogenesis. ↵↵As a lithotroph, this microorganism derives energy from inorganic compounds, which is essential for its survival in environments devoid of oxygen. The ability to thrive in anaerobic conditions allows it to inhabit niches such as wetlands, sediments, and other anaerobic ecosystems, where it may influence the degradation of organic material and the production of methane. ↵↵The unique combination of its coccoid shape and metabolic capabilities suggests that Methanosarcina mazei strain 3.H.T.1A.2 could be an important player in the microbial communities of anaerobic environments, contributing to nutrient cycling and energy flow within these ecosystems. Further studies on its interactions with other microorganisms and its specific ecological roles could provide insights into the functioning and stability of anaerobic habitats." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJPZ00000000.1 Bac0012533 Methanosarcina mazei strain 1.F.A.1A.3 "Methanosarcina mazei strain 1.F.A.1A.3 is a nonsporulating cocci-shaped archaeon that functions as a lithotrophic anaerobe, thriving optimally at a temperature of 30.0 °C. This strain is part of a diverse group of methanogenic microorganisms that utilize inorganic compounds as energy sources, indicating its role in carbon cycling and methane production in various anaerobic environments. ↵↵The habitat of Methanosarcina mazei strain 1.F.A.1A.3 is notably versatile, allowing it to inhabit multiple ecological niches where anaerobic conditions prevail, such as sediments, digestive tracts of ruminants, and wastewater treatment systems. The ability to adapt to different environments enhances its ecological significance, particularly in biogeochemical processes.↵↵Given its lithotrophic nature, Methanosarcina mazei strain 1.F.A.1A.3 may play a crucial role in the degradation of organic material and the conversion of carbon dioxide to methane, contributing to greenhouse gas emissions and energy recovery in anaerobic digestion systems. Understanding the metabolic pathways and ecological interactions of this strain can provide insights into its potential applications in biotechnological processes aimed at sustainable energy production and waste management." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQA00000000.1 Bac0012534 Methanosarcina mazei strain 1.F.A.1B.3 "Methanosarcina mazei strain 1.F.A.1B.3 is a nonsporulating cocci that thrives as an anaerobic lithotroph, with an optimal growth temperature of 30.0°C. This strain utilizes inorganic compounds as an energy source, which positions it within the unique group of methanogenic archaea that play a pivotal role in anaerobic environments. ↵↵Methanosarcina mazei strain 1.F.A.1B.3 is found in diverse habitats, suggesting its adaptability to varying ecological niches, which may include sediments, marshes, and digestive tracts of ruminants or other anaerobic environments. The nonsporulating nature of this strain indicates that it relies on environmental conditions for survival and proliferation, rather than forming dormant spores to withstand adverse conditions. ↵↵The ability to utilize inorganic substrates for energy contributes to its ecological function in biogeochemical cycles, particularly in the conversion of organic matter to methane in anaerobic settings. This process not only impacts carbon cycling but also influences the greenhouse gas dynamics of its habitats. Thus, Methanosarcina mazei strain 1.F.A.1B.3 serves as a key player in methane production and has implications for understanding methane emissions in natural and engineered ecosystems." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQB00000000.1 Bac0012535 Methanosarcina mazei strain 1.F.A.2.8 "Methanosarcina mazei strain 1.F.A.2.8 is a nonsporulating cocci-shaped archaeon characterized as a lithotrophic anaerobe that thrives optimally at 30.0°C. This strain is part of the Methanosarcina genus, which is known for its ability to utilize various substrates for methanogenesis, a crucial process in anaerobic environments. The lithotrophic metabolism of M. mazei strain 1.F.A.2.8 indicates its capacity to derive energy from inorganic compounds, which allows it to occupy diverse habitats where organic matter is limited or absent.↵↵As an anaerobic organism, M. mazei strain 1.F.A.2.8 plays a significant role in the biogeochemical cycles of carbon and energy, particularly in environments such as sediments, wetlands, and anaerobic digesters. Its ability to thrive without oxygen positions it as an essential contributor to the degradation of organic material under anaerobic conditions. The multiple habitats in which it can be found suggest a versatile adaptability to various environmental conditions, enhancing its ecological significance in microbial communities. Understanding the metabolic pathways and ecological roles of M. mazei strain 1.F.A.2.8 may provide insights into its potential applications in biotechnological processes, such as biogas production and waste treatment, where methanogenic archaea are instrumental in energy recovery from organic waste." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQD00000000.1 Bac0012536 Methanosarcina mazei strain 1.F.M.0.5 "Methanosarcina mazei strain 1.F.M.0.5 is a coccoid, nonsporulating anaerobic microorganism that thrives optimally at a temperature of 30.0°C. This strain is classified as a lithotroph, indicating that it derives its energy from inorganic compounds rather than organic substrates. Methanosarcina mazei strain 1.F.M.0.5 is capable of inhabiting a variety of environments, reflecting its versatile ecological adaptations.↵↵As an anaerobic organism, it contributes to the biogeochemical cycling of carbon, particularly through the process of methanogenesis, where it generates methane from substrates such as carbon dioxide and hydrogen. The ability of this strain to utilize inorganic energy sources underscores its significance in anaerobic ecosystems, where it may play a role in the degradation of organic matter and the stabilization of sediments. ↵↵Furthermore, the presence of Methanosarcina mazei strain 1.F.M.0.5 in diverse habitats suggests its potential utility in biotechnological applications, such as biogas production, where efficient methane generation is essential. Understanding the specific metabolic pathways and environmental conditions that favor its growth can provide insights into enhancing its performance in industrial processes aimed at sustainable energy production and waste management." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQE00000000.1 Bac0012537 Methanosarcina mazei strain 1.H.A.1A.3 "Methanosarcina mazei strain 1.H.A.1A.3 is a nonsporulating, cocci-shaped archaeon that thrives as a lithotrophic anaerobe at an optimal temperature of 30.0°C. This strain is part of a diverse group of methanogenic microbes capable of producing methane through various metabolic pathways, utilizing inorganic compounds as energy sources. The ability to grow in multiple habitats underscores its ecological versatility, suggesting that it may occupy a range of anaerobic environments, such as sediments, wetlands, and digestive tracts of animals.↵↵As an anaerobic organism, Methanosarcina mazei strain 1.H.A.1A.3 plays a crucial role in the carbon cycle by converting organic carbon compounds into methane in environments devoid of oxygen. This metabolic process not only facilitates energy capture for the organism itself but also contributes to the greenhouse gas emissions associated with methane. The strain's lithotrophic lifestyle indicates that it may utilize inorganic substrates, potentially including hydrogen and carbon dioxide, to sustain its growth and methanogenesis. ↵↵Further investigation into the specific substrates and metabolic pathways employed by this strain could illuminate its ecological functions and contributions to biogeochemical cycles in anaerobic environments, particularly in the context of methane production and its implications for climate change. Such insights would enhance our understanding of microbial ecology and the role of methanogens in various ecosystems." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQH00000000.1 Bac0012538 Methanosarcina mazei strain 1.H.A.2.1 "Methanosarcina mazei strain 1.H.A.2.1 is a nonsporulating, coccoid archaeon that optimally thrives at a temperature of 30.0°C. This organism is classified as a lithotroph, deriving its energy from inorganic compounds, which allows it to play a significant role in biogeochemical cycles, particularly in anaerobic environments. Methanosarcina mazei strain 1.H.A.2.1 is strictly anaerobic, meaning it cannot survive in the presence of oxygen, and it occupies diverse habitats where anaerobic conditions prevail.↵↵The strain's coccoid shape may confer advantages in its ecological niches, potentially enhancing its ability to aggregate or form biofilms in sediment or other anaerobic substrates. Given its lithotrophic metabolism, Methanosarcina mazei strain 1.H.A.2.1 likely contributes to methane production in various habitats, including wetlands, sediments, and other environments rich in organic matter. This metabolic capacity is crucial for understanding the role of methanogenic archaea in carbon cycling and their potential implications for greenhouse gas emissions in anaerobic ecosystems. The adaptability of this strain to multiple habitats underscores the ecological versatility of methanogens and their importance in anaerobic microbial communities." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQK00000000.1 Bac0012539 Methanosarcina mazei strain 1.H.A.2.7 "Methanosarcina mazei strain 1.H.A.2.7 is a coccoid, nonsporulating methanogenic archaeon that thrives optimally at a temperature of 30.0 °C. This strain is classified as a lithotroph, utilizing inorganic compounds as an energy source, which enables it to contribute to methane production in anaerobic environments. As an obligate anaerobe, Methanosarcina mazei strain 1.H.A.2.7 is adapted to habitats devoid of oxygen, where it plays a vital role in the degradation of organic matter and the cycling of carbon in various ecosystems.↵↵The ability of this strain to inhabit multiple environments suggests its versatility and ecological significance in biogeochemical processes, particularly in environments such as wetlands, sediments, and anaerobic digesters. By leveraging its lithotrophic metabolism, Methanosarcina mazei strain 1.H.A.2.7 can effectively utilize substrates that are otherwise inaccessible to many other microorganisms, thus facilitating energy flow and nutrient recycling in anaerobic ecosystems. This adaptability not only underscores its importance in methane generation but also highlights its potential role in biotechnological applications aimed at renewable energy production and waste treatment." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQO00000000.1 Bac0012540 Methanosarcina mazei strain 1.H.A.2.8 "Methanosarcina mazei strain 1.H.A.2.8 is a nonsporulating, coccoid archaeon that thrives as a lithotrophic anaerobe, with an optimal growth temperature of 30.0°C. This strain is known to utilize inorganic compounds as its energy source, which is characteristic of lithotrophic organisms that derive energy from oxidation-reduction reactions involving minerals or gases rather than organic compounds. ↵↵The habitat of Methanosarcina mazei strain 1.H.A.2.8 is diverse, indicating its adaptability to various anaerobic environments. This adaptability may enable the organism to play a significant role in biogeochemical cycles, particularly in methanogenesis, where it contributes to methane production in anaerobic conditions. ↵↵The nonsporulating nature of this strain suggests that it may rely on its metabolic pathways and environmental resilience rather than sporulation as a survival strategy under adverse conditions. Overall, Methanosarcina mazei strain 1.H.A.2.8 exemplifies the functional diversity of the Methanosarcina genus and highlights the ecological importance of methanogenic archaea in anaerobic ecosystems, particularly in their potential contributions to carbon cycling and greenhouse gas dynamics." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQP00000000.1 Bac0012541 Methanosarcina mazei strain 1.H.M.1A.2 "Methanosarcina mazei strain 1.H.M.1A.2 is a coccoid, nonsporulating anaerobic microbe that thrives optimally at a temperature of 30.0°C. This strain utilizes lithotrophic metabolism, indicating that it derives energy from inorganic compounds, which is characteristic of methanogenic archaea. Methanosarcina mazei is known to inhabit various environments, reflecting its versatile ecological adaptability. ↵↵As a member of the Methanosarcina genus, this strain plays a vital role in the carbon cycle, particularly in anaerobic environments where it contributes to methane production. Methanogens such as M. mazei are crucial for the degradation of organic matter in habitats such as wetlands, sediments, and the digestive tracts of certain animals, where they facilitate the conversion of complex organic substrates into methane.↵↵The ability of M. mazei strain 1.H.M.1A.2 to function as a lithotroph enhances its ecological role in nutrient cycling, as it can utilize substrates that may be unavailable to other microorganisms. This adaptability not only supports its survival in diverse habitats but also underscores the importance of methanogens in maintaining the balance of anaerobic ecosystems. Understanding the metabolic capabilities of M. mazei strain 1.H.M.1A.2 may provide insights into its potential applications in biotechnological processes, such as biogas production and waste treatment." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQS00000000.1 Bac0012542 Methanosarcina mazei strain 1.H.M.1A.3 "Methanosarcina mazei strain 1.H.M.1A.3 is a cocci-shaped, nonsporulating microorganism that thrives as an anaerobic lithotroph, with an optimal growth temperature of 30.0 °C. This strain utilizes inorganic compounds as its primary energy source, which positions it within a niche of organisms that contribute to the biogeochemical cycling of carbon and other elements in various anaerobic environments. ↵↵As a member of the Methanosarcina genus, this strain is adapted to a range of habitats, indicating its potential versatility in different anaerobic ecosystems, such as sediments, wetlands, and the digestive tracts of certain animals. The ability to grow in multiple habitats suggests that Methanosarcina mazei strain 1.H.M.1A.3 may play a significant role in methane production, particularly in environments rich in organic matter where it can facilitate the degradation of substrates under anaerobic conditions.↵↵The unique combination of its morphological characteristics, energy acquisition strategy, and habitat adaptability underscores the ecological importance of Methanosarcina mazei strain 1.H.M.1A.3 in anaerobic biogeochemical processes, particularly in the context of methane generation and carbon cycling. Further exploration of this strain could enhance our understanding of methanogenic pathways and their implications for environmental management and climate change mitigation." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQT00000000.1 Bac0012543 Methanosarcina mazei strain 1.H.M.2.1 "Methanosarcina mazei strain 1.H.M.2.1 is a coccoid, nonsporulating anaerobic microorganism that thrives optimally at 30.0 °C and utilizes lithotrophic processes for energy acquisition. This strain is adapted to various habitats, which may include anaerobic environments such as sediments, digestive tracts of animals, or other organic-rich ecosystems where it can play a significant role in methanogenesis.↵↵Being a lithotroph, Methanosarcina mazei strain 1.H.M.2.1 likely derives its energy from inorganic substrates, which is a crucial feature for its survival in environments where organic matter is limited. Its anaerobic nature indicates that it does not require oxygen for growth, making it well-suited for environments where oxygen is absent or scarce. ↵↵The metabolic capabilities of this strain suggest that it may contribute to the biogeochemical cycling of carbon and other elements in its habitats, particularly through the production of methane. This process has implications for both ecological dynamics and potential applications in biogas production. Understanding the specific roles of Methanosarcina mazei strain 1.H.M.2.1 in its native environments can provide insights into microbial community interactions and the efficiency of energy conversion in anaerobic ecosystems." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQU00000000.1 Bac0012544 Methanosarcina mazei strain 1.H.M.2.3 "Methanosarcina mazei strain 1.H.M.2.3 is a nonsporulating, cocci-shaped methanogenic archaeon that thrives in anaerobic environments, with an optimal growth temperature of 30.0°C. This strain utilizes lithotrophic metabolism, deriving energy from inorganic compounds, which positions it as a key player in biogeochemical cycles, particularly in the conversion of substrates to methane.↵↵Methanosarcina mazei strain 1.H.M.2.3 has been found in diverse habitats, highlighting its ecological versatility. Its anaerobic requirement suggests a significant role in environments where oxygen is scarce, such as deep sediments, wetlands, and the gastrointestinal tracts of some animals. The strain's ability to thrive in various anaerobic niches emphasizes its potential contribution to methane production and carbon cycling in those ecosystems.↵↵Overall, the metabolic capabilities and habitat adaptability of Methanosarcina mazei strain 1.H.M.2.3 suggest that it not only plays an essential role in methane generation but also may influence the dynamics of nutrient cycling and energy flow in anaerobic environments." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQW00000000.1 Bac0012545 Methanosarcina mazei strain 1.H.M.2.4 "Methanosarcina mazei strain 1.H.M.2.4 is a nonsporulating, coccoid archaeon that thrives in anaerobic environments, with an optimal growth temperature of 30.0°C. This strain utilizes lithotrophic metabolism, enabling it to derive energy from inorganic compounds, which is a characteristic adaptation for survival in diverse habitats. Methanosarcina mazei is known for its ability to reduce carbon dioxide to methane, contributing to the carbon cycling process in anaerobic ecosystems.↵↵The strain's nonsporulating nature indicates a reliance on stable environments for survival and reproduction, as it does not form spores to endure adverse conditions. Its anaerobic requirement suggests a specialized ecological niche, where oxygen is absent, such as in sediments, landfills, or the digestive tracts of certain organisms. The adaptability of Methanosarcina mazei strain 1.H.M.2.4 to multiple habitats highlights its potential role in both natural and engineered systems, particularly in biogas production and waste treatment processes, where methane generation is beneficial. ↵↵Overall, the metabolic capabilities and growth conditions of Methanosarcina mazei strain 1.H.M.2.4 illustrate its importance in anaerobic biogeochemical cycles and its contribution to methane emissions in various ecological settings. Understanding its traits can provide insights into microbial processes that influence global carbon dynamics." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQX00000000.1 Bac0012546 Methanosarcina mazei strain 1.H.T.2.1 "Methanosarcina mazei strain 1.H.T.2.1 is a cocci-shaped, nonsporulating archaeon that thrives as a lithotrophic anaerobe, with an optimal growth temperature of 30.0°C. This strain is part of the Methanosarcina genus, which is known for its ability to utilize various substrates for methanogenesis, a critical process in carbon cycling. The lithotrophic capabilities of Methanosarcina mazei strain 1.H.T.2.1 enable it to derive energy from inorganic compounds, which allows it to inhabit diverse environments, although specific habitat preferences are not detailed in the provided data.↵↵As an anaerobic organism, Methanosarcina mazei strain 1.H.T.2.1 plays a significant role in anaerobic digestion processes, contributing to methane production in environments where oxygen is absent. This characteristic positions it as a key player in the degradation of organic materials in various ecosystems, such as wetlands, sediments, and the digestive tracts of certain animals. The ability of this strain to adapt to multiple habitats underlines its ecological versatility and importance in biogeochemical cycles, particularly in the context of methane emissions and energy recovery in anaerobic processes. Understanding the specific metabolic pathways and environmental interactions of this strain may provide insights into its potential applications in bioenergy production and bioremediation strategies." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJQZ00000000.1 Bac0012547 Methanosarcina mazei strain 1.H.T.2.5 "Methanosarcina mazei strain 1.H.T.2.5 is a nonsporulating, coccoid archaeon that exhibits lithotrophic metabolism, thriving optimally at a temperature of 30.0°C. This strain is strictly anaerobic, indicating that it does not require oxygen for growth and is instead adapted to environments devoid of this gas. ↵↵As a lithotroph, Methanosarcina mazei strain 1.H.T.2.5 likely utilizes inorganic compounds as an energy source, which is characteristic of methanogenic archaea. The ability to thrive in multiple habitats suggests a versatile ecological role, potentially contributing to carbon cycling and methane production in diverse anaerobic environments, such as wetlands, sediments, and gastrointestinal tracts of certain herbivores.↵↵The nonsporulating nature of this strain implies that it relies on other survival strategies in fluctuating environmental conditions, which may include forming biofilms or utilizing nutrient reserves. Understanding the metabolic capabilities and environmental adaptability of Methanosarcina mazei strain 1.H.T.2.5 could provide insights into its potential applications in biogas production and its involvement in natural methane emissions. This strain exemplifies the complexity of microbial life in anaerobic ecosystems, highlighting the importance of such organisms in global biogeochemical cycles." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 2209 JJRB00000000.1 Bac0012548 Schinkia azotoformans MEV2011 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Schinkia Schinkia azotoformans 1348973 JJRY00000000.1 Bac0012549 Mycobacterium avium XTB13-223 "Mycobacterium avium XTB13-223 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a chemoorganotroph, utilizing organic compounds as its primary energy source. It thrives optimally at a temperature of 37.0°C, aligning with the physiological temperature of warm-blooded hosts, which suggests an adaptation to a host-associated lifestyle. ↵↵As a microaerophile, Mycobacterium avium XTB13-223 requires reduced levels of oxygen for growth, indicating a specific niche within host environments where oxygen levels may be lower than atmospheric conditions. The ability to survive in such microaerophilic conditions could facilitate its persistence in specialized host tissues or environments that limit oxygen availability.↵↵Given its traits, Mycobacterium avium XTB13-223 may play a role in the microbiomes of its hosts, contributing to complex interactions within the host-associated ecosystem. Its adaptation to microaerophilic conditions and reliance on organic matter for energy suggests potential interactions with the host's metabolic processes and immune responses, which could be an intriguing area for future research. This unique ecological positioning may also offer insights into the bacterium's role in the maintenance of host health or disease dynamics." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1427296 JLIC00000000.1 Bac0012550 Mycobacterium [tuberculosis] TKK-01-0051 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium colombiense 1324261 JLXW00000000.1 Bac0012551 Hyalangium minutum strain DSM 14724 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium minutum 394096 JMCB00000000.1 Bac0012552 Paenibacillus sp. E194 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. E194 1458845 JMDX00000000.1 Bac0012553 Stutzerimonas degradans strain HMP271 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas degradans 2968968 JMFZ00000000.1 Bac0012554 Mycobacterium sp. SWH-M3 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. SWH-M3 1490482 JMHR00000000.1 Bac0012555 Mycobacterium sp. ST-F2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ST-F2 1490484 JMHT00000000.1 Bac0012556 Ligilactobacillus animalis strain 381-IL-28 "Ligilactobacillus animalis strain 381-IL-28 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic respiration. This strain, belonging to the genus Ligilactobacillus, is characterized by its ability to thrive in both the presence and absence of oxygen, which may confer advantages in varied ecological niches. ↵↵As a member of the lactic acid bacteria group, Ligilactobacillus animalis strain 381-IL-28 plays a significant role in fermentation processes, contributing to the production of lactic acid, which can influence the pH and microbial composition of its environment. The rod shape of this strain may facilitate its colonization and interaction within diverse habitats, including those found in animal intestines or fermented food products.↵↵The facultative anaerobic nature suggests that strain 381-IL-28 can adapt to fluctuating oxygen levels, potentially allowing it to occupy a range of ecological niches where oxygen availability may vary. This adaptability might enhance its survival and metabolic efficiency in both aerobic and anaerobic conditions.↵↵Understanding the specific metabolic capabilities and ecological interactions of Ligilactobacillus animalis strain 381-IL-28 could provide insights into its potential applications in food biotechnology or probiotic formulations, where its ability to thrive in dynamic environments may be particularly beneficial. Further research may elucidate the functional roles this strain plays in its natural habitats and its implications for health and industry." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus animalis Positive Rod Facultative anaerobe 1605 JMHU00000000.1 Bac0012557 Photobacterium galatheae strain S2753 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium galatheae 1654360 JMIB00000000.1 Bac0012558 Anditalea andensis strain LY1 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Anditalea Anditalea andensis 1048983 JMIH00000000.1 Bac0012559 Methanoculleus sp. MH98A Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp. MH98A 1495314 JMIO00000000.1 Bac0012560 Hydrogenovibrio marinus strain MH-110 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Hydrogenovibrio Hydrogenovibrio marinus 28885 JMIU00000000.1 Bac0012561 Erythrobacter longus strain DSM 6997 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter longus high-tidal seaweed 1044 JMIW00000000.1 Bac0012562 Erythrobacter litoralis strain DSM 8509 "Erythrobacter litoralis strain DSM 8509 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration and functions as an organotrophic chemotroph. This strain thrives optimally at a temperature of 29.0 °C, indicating a preference for moderate environmental conditions. As an organotroph, E. litoralis strain DSM 8509 utilizes organic compounds as its primary energy source, which is characteristic of many bacteria that inhabit diverse ecological niches.↵↵The aerobic nature of this microbe suggests that it plays a role in environments where oxygen is readily available, potentially contributing to biogeochemical cycles. Given its adaptation to moderate temperatures and aerobic conditions, Erythrobacter litoralis strain DSM 8509 may inhabit coastal marine environments, where it could participate in the degradation of organic matter. This strain's metabolic capabilities highlight its potential significance in nutrient cycling within such ecosystems, where it may influence the availability of organic substrates for other microbial communities. Further research into its specific ecological interactions could yield insights into its role in marine microbiomes and the broader implications for ecosystem functioning." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter litoralis Gram-negative rod motile aerobic 29 organotroph; chemotroph mesophilic 39960 JMIX00000000.1 Bac0012563 Synergistes jonesii strain 78-1 Thermotogati Synergistota Synergistia Synergistales Synergistaceae Synergistes Synergistes jonesii 2754 JMKI00000000.1 Bac0012564 Acinetobacter sp. 72431 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 72431 1310685 JMNZ00000000.1 Bac0012565 Acinetobacter baumannii 233846 "Acinetobacter baumannii 233846 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotroph, indicating that it derives energy from organic compounds. A. baumannii 233846 is an aerobic microbe, requiring oxygen for its metabolic processes. ↵↵The habitat of Acinetobacter baumannii is diverse, allowing it to occupy various environments, which may include both clinical and non-clinical settings. The organism's ability to survive in multiple habitats suggests a notable ecological versatility, potentially contributing to its persistence and adaptability in changing environmental conditions.↵↵Understanding the traits of A. baumannii 233846 not only elucidates its metabolic capabilities but also highlights its significance in various ecosystems, where it may play roles in nutrient cycling or as part of microbial communities. Its adaptability and survival strategies in diverse habitats could provide insights into its potential interactions with other microorganisms and its overall ecological impact." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1310736 JMOG00000000.1 Bac0012566 Ewingella americana ATCC 33852 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Ewingella Ewingella americana 910964 JMPJ00000000.1 Bac0012567 Leminorella grimontii ATCC 33999 = DSM 5078 strain ATCC 33999 "Leminorella grimontii ATCC 33999 = DSM 5078 is a Gram-negative bacterium characterized by its distinct cellular morphology and biochemical properties. This strain, part of the family Enterobacteriaceae, exhibits a rod-shaped structure typical of many bacteria within this group. As a member of the Gram-negative category, it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may influence its interactions in various environments.↵↵While specific metabolic capabilities and ecological roles have not been detailed in the provided traits, the classification of Leminorella grimontii within Enterobacteriaceae suggests potential adaptability to diverse nutrient sources. This adaptability is a hallmark of many members of this family, allowing them to thrive in varied environments, including soil, water, and as part of the microbiota of animals.↵↵Given its classification, Leminorella grimontii may play a role in the cycling of nutrients in its habitat, potentially contributing to the degradation of organic matter. Further research into its specific metabolic pathways and ecological interactions would be necessary to fully elucidate the biological significance of this organism. Understanding the environmental roles of such bacteria can enhance our knowledge of microbial ecosystems and their contributions to environmental health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Budviciaceae Leminorella Leminorella grimontii negative 82981 JMPN00000000.1 Bac0012568 Deinococcus sp. RL Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. RL 1489678 JMQF00000000.1 Bac0012569 Nitratireductor basaltis strain UMTGB225 "Nitratireductor basaltis strain UMTGB225 is a Gram-negative, rod-shaped bacterium characterized by its optimal growth temperature of 29.0°C. This organism is part of a group of microbes known for their ability to reduce nitrate, a trait that may play a significant role in biogeochemical cycles, particularly in nitrogen cycling within its native environment. As a member of the Nitratireductor genus, strain UMTGB225 is likely adapted to specific ecological niches where nitrate availability is a critical factor.↵↵The rod shape of Nitratireductor basaltis strain UMTGB225 potentially influences its motility and surface interactions, aspects that can be crucial for colonization and nutrient acquisition in competitive microbial communities. The optimal growth temperature suggests a mesophilic nature, indicating that this strain thrives in moderately warm environments. ↵↵Further investigations into the metabolic pathways and environmental interactions of strain UMTGB225 could illuminate its role in ecosystems where it is found, particularly in relation to nitrogen transformation processes. Understanding these dynamics could provide insights into how such bacteria contribute to nutrient cycling in basaltic or alkaline environments, thereby influencing soil fertility and ecosystem health. This highlights the importance of studying microbial diversity and functionality in various habitats, particularly those that are less understood." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor basaltis Gram-negative rod non-motile 29 mesophilic 472175 JMQM00000000.1 Bac0012570 Marinobacterium lacunae strain AK27 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinobacterium Marinobacterium lacunae 1232683 JMQN00000000.1 Bac0012571 Trabulsiella guamensis ATCC 49490 "Trabulsiella guamensis ATCC 49490 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microorganism has been isolated and cataloged in culture collections, indicating its relevance for scientific research and potential applications. The Gram-negative nature of T. guamensis suggests the presence of an outer membrane containing lipopolysaccharides, a feature that is significant for understanding its structural biology and interactions with the environment.↵↵As a member of the microbial community, T. guamensis may play a role in nutrient cycling or other ecological processes, although specific ecological functions have not been documented in the available data. The unique traits of this organism, particularly its Gram-negative cell wall structure, could afford it particular resilience to environmental stresses or influence its interactions with other microorganisms. The presence of T. guamensis in culture collections may provide opportunities for further research into its metabolic capabilities and potential uses in biotechnological applications.↵↵In summary, Trabulsiella guamensis ATCC 49490 exemplifies the diversity of Gram-negative bacteria and highlights the importance of studying such organisms to unravel their roles in various biological contexts and ecosystems. Further investigation into its physiology and ecological interactions could yield insights into its significance in microbiological studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Trabulsiella Trabulsiella guamensis negative 1005994 JMTB00000000.1 Bac0012572 Citrobacter freundii MGH 56 "Citrobacter freundii MGH 56 is a Gram-negative bacterium distinguished by its facultative anaerobic metabolism. This microbe can thrive in both aerobic and anaerobic environments, reflecting its versatility in utilizing different metabolic pathways depending on the availability of oxygen. C. freundii is part of the Enterobacteriaceae family and is typically found in a variety of habitats, including soil, water, and the intestinal tracts of humans and animals.↵↵As a facultative anaerobe, C. freundii MGH 56 can adapt its respiration processes to accommodate the presence or absence of oxygen, allowing it to occupy ecological niches where oxygen availability fluctuates. This adaptability may play a role in its survival and persistence in diverse environments, including those impacted by varying levels of organic matter and nutrient availability.↵↵While the specific pathogenic potential of C. freundii MGH 56 is not detailed here, the broader genus has been associated with opportunistic infections in humans. Its metabolic flexibility may enable it to exploit various substrates in its environment, contributing to its ecological success. Understanding the traits of C. freundii MGH 56 provides insights into the adaptability of Gram-negative bacteria in changing ecological contexts, reflecting the complex interactions that shape microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Facultative anaerobe 1439318 JMUJ00000000.1 Bac0012573 Prochlorococcus marinus str. GP2 "Prochlorococcus marinus strain GP2 is a Gram-negative coccoid cyanobacterium that plays a significant role in marine ecosystems due to its photosynthetic capabilities. This microbe is predominantly found in aquatic environments, where it contributes to primary production and influences the biogeochemical cycling of carbon and nutrients in oceanic waters. ↵↵Characterized by its small cell size and unique photosynthetic machinery, Prochlorococcus marinus strain GP2 is adapted to low-light conditions, thriving in oligotrophic waters, where it can efficiently utilize available light for energy. This adaptation enables it to occupy ecological niches that are less accessible to larger phytoplankton, allowing it to be a dominant photosynthetic organism in these environments.↵↵Furthermore, the efficient photosynthetic apparatus of Prochlorococcus marinus strain GP2 contributes to the global carbon cycle by sequestering atmospheric CO2 through its metabolic processes. As such, it plays a crucial role in influencing oceanic productivity and serves as a foundational component of the marine food web. This highlights the importance of Prochlorococcus marinus strain GP2 in sustaining marine biodiversity and the overall health of oceanic ecosystems, emphasizing its ecological significance in maintaining the balance of marine habitats." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 59925 JNAH00000000.1 Bac0012574 Prochlorococcus marinus str. MIT 9302 "Prochlorococcus marinus strain MIT 9302 is a Gram-negative, cocci-shaped microbe that thrives in aquatic environments, exhibiting a photosynthetic mode of energy acquisition. This marine cyanobacterium is notable for its efficient light-harvesting capabilities, which enable it to occupy a significant ecological niche in oligotrophic oceanic waters. ↵↵Characterized by its small cell size and high surface-to-volume ratio, Prochlorococcus marinus str. MIT 9302 plays a crucial role in primary production, contributing to the base of the marine food web. The species is particularly adapted to low-light conditions, allowing it to inhabit depths where other photosynthetic organisms may be less competitive. Its ability to utilize light for energy in nutrient-poor environments makes it a key player in carbon cycling and oxygen production within the marine ecosystem.↵↵The presence of Prochlorococcus in vast areas of the ocean not only highlights its importance in marine ecology but also underscores its potential influence on global biogeochemical cycles. Its adaptation to varying light conditions suggests that it may respond dynamically to changes in oceanic light availability, which could have implications for carbon fixation rates in response to climate change. Thus, Prochlorococcus marinus str. MIT 9302 serves as a model organism for studying the interplay between microbial communities and their environments, particularly in the context of ocean health and climate resilience." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 74545 JNAM00000000.1 Bac0012575 Prochlorococcus sp. MIT 0602 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 0602 1499499 JNAV00000000.1 Bac0012576 Prochlorococcus marinus str. PAC1 "Prochlorococcus marinus strain PAC1 is a Gram-negative, coccoid-shaped marine cyanobacterium known for its photosynthetic capabilities. This microbe thrives in aquatic environments, where it utilizes sunlight as its primary energy source, contributing significantly to the primary production in oligotrophic oceanic regions. Prochlorococcus is characterized by its small cell size and high efficiency in light harvesting, which allows it to occupy various niches within the photic zone.↵↵As a photosynthetic organism, Prochlorococcus marinus strain PAC1 plays a critical role in the marine ecosystem by facilitating carbon fixation, thus influencing oceanic carbon cycles and contributing to global oxygen production. This strain exemplifies the remarkable adaptability of cyanobacteria to diverse light conditions, showcasing the evolutionary significance of their photosynthetic machinery. The ecological insights gleaned from studying Prochlorococcus marinus strain PAC1 can enhance our understanding of microbial contributions to ocean health, particularly in the context of climate change and ocean acidification, where shifts in microbial community structure may alter biogeochemical processes in marine environments." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 59924 JNAX00000000.1 Bac0012577 Prochlorococcus sp. MIT 0701 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 0701 1499502 JNBA00000000.1 Bac0012578 Kitasatospora cheerisanensis KCTC 2395 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora cheerisanensis 1348663 JNBY00000000.1 Bac0012579 Flavobacterium seoulense strain EM1321 "Flavobacterium seoulense strain EM1321 is a Gram-negative, aerobic bacterium that exhibits distinct metabolic and physiological characteristics. As part of the genus Flavobacterium, this strain is inherently adapted to oxygen-rich environments, utilizing aerobic respiration for its energy needs. The Gram-negative nature of F. seoulense EM1321 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group and contributes to its resilience in various habitats.↵↵The strain's aerobic requirement suggests it thrives in environments where oxygen is readily available, potentially influencing its ecological role in biogeochemical cycles. The metabolic pathways and interactions of F. seoulense EM1321 may also contribute to nutrient cycling, particularly in aquatic ecosystems where members of the Flavobacterium genus are commonly found. This bacterium's adaptation to aerobic conditions positions it as a potential player in organic matter degradation, highlighting its possible significance in maintaining ecosystem health and function.↵↵Overall, Flavobacterium seoulense strain EM1321 exemplifies the diverse adaptations of microorganisms to aerobic habitats, which can have broader implications for understanding microbial dynamics in oxygenated environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium seoulense negative aerobic 1492738 JNCA00000000.1 Bac0012580 Flavobacterium gilvum strain EM1308 "Flavobacterium gilvum strain EM1308 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and thrives optimally at a temperature of 29.0°C. As a member of the Flavobacterium genus, this strain is likely to be involved in the degradation of organic matter, playing a role in nutrient cycling within its environment. The aerobic nature of Flavobacterium gilvum strain EM1308 suggests that it relies on oxygen for its respiration, which may influence its habitat preferences, likely favoring well-aerated environments such as soil or aquatic systems.↵↵The rod shape of this bacterium may contribute to its motility and ability to form biofilms, facilitating its colonization in various ecological niches. Given its optimal growth temperature, Flavobacterium gilvum strain EM1308 might be particularly adapted to mesophilic conditions, which are commonly found in temperate regions. This adaptability indicates a potential role in the decomposition processes in these habitats, where it could contribute to the breakdown of complex organic substances.↵↵Understanding the physiological traits of Flavobacterium gilvum strain EM1308 enhances our comprehension of its ecological role in microbial communities, particularly regarding its potential contributions to organic matter degradation and nutrient cycling in diverse environments. The strain's specific adaptations to aerobic conditions and moderate temperatures might also inform its applications in bioremediation or other biotechnological endeavors." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium gilvum Gram-negative rod non-motile aerobic 29 mesophilic 1492737 JNCP00000000.1 Bac0012581 Sphingopyxis sp. LC81 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. LC81 1502850 JNFD00000000.1 Bac0012582 Nocardia vulneris strain W9851 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia vulneris microaerophile 1141657 JNFP00000000.1 Bac0012583 Streptomyces mutabilis strain TRM 45540 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces mutabilis 67332 JNFQ00000000.1 Bac0012584 Bacteroides fragilis str. 3725 D9 ii "Bacteroides fragilis strain 3725 D9 ii is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in anaerobic conditions, utilizing organic compounds as a source of energy. This strain exhibits optimal growth at 37.0°C, which aligns with the physiological temperature of the human body, suggesting its adaptation to a host-associated environment. ↵↵As a member of the Bacteroides genus, B. fragilis plays a significant role in the human gut microbiota, contributing to the complex microbial ecosystem. Its ability to metabolize a variety of organic substrates makes it a crucial player in the breakdown of dietary fibers and other complex carbohydrates within the gastrointestinal tract. This metabolic versatility not only aids in nutrient absorption for the host but also influences the overall microbial balance and health of the gut.↵↵The anaerobic nature of B. fragilis strain 3725 D9 ii underscores its specialized niche within the host, as it thrives in oxygen-deprived environments typically found in the gut lumen. The existence of this strain within the gut microbiome reflects the intricate relationships formed among microbial communities and their host, highlighting the importance of anaerobic bacteria in maintaining gastrointestinal homeostasis and possibly influencing immune responses. Further studies on this strain may provide insights into the functional roles of Bacteroides species in health and disease within their host environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1339286 JNHH00000000.1 Bac0012585 Parabacteroides distasonis str. 3776 Po2 i "Parabacteroides distasonis str. 3776 Po2 i is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits an anaerobic lifestyle, primarily residing in host-associated environments. This microbe is part of the complex microbial communities found in the gastrointestinal tracts of various hosts, where it plays a role in the fermentation of dietary fibers and production of short-chain fatty acids, which are beneficial for host health.↵↵As an anaerobe, P. distasonis str. 3776 Po2 i thrives in low-oxygen conditions, which are typical of the intestinal environment, allowing it to outcompete other microbial species for resources. Its nonsporulating nature suggests that it relies on other survival strategies, such as metabolic flexibility, to withstand the fluctuating conditions within the gut ecosystem.↵↵Additionally, the presence of P. distasonis in the gut microbiome may contribute to the maintenance of gut homeostasis and influence host metabolic processes. Understanding the functional capabilities and interactions of this strain within the gut microbiota could provide insights into its potential roles in digestive health and disease. Given its association with host environments, P. distasonis str. 3776 Po2 i may also serve as a model organism for studying host-microbe interactions and the implications of anaerobic bacteria in human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1339341 JNHL00000000.1 Bac0012586 Bacteroides uniformis str. 3978 T3 ii "Bacteroides uniformis str. 3978 T3 ii is a Gram-negative, anaerobic bacterium distinguished by its ability to thrive in environments devoid of oxygen. This species is part of the Bacteroides genus, which is commonly found in the gastrointestinal tract of humans and other animals. As an anaerobe, Bacteroides uniformis str. 3978 T3 ii plays a crucial role in the fermentation of complex carbohydrates, contributing to the overall health of the intestinal microbiota.↵↵The Gram-negative nature of Bacteroides uniformis str. 3978 T3 ii indicates the presence of a thin peptidoglycan layer encased within an outer membrane, characteristic of this group of bacteria. This structural feature may confer advantages in resisting certain environmental stresses, including the presence of bile acids or antimicrobial agents.↵↵Moreover, the ecological significance of Bacteroides uniformis str. 3978 T3 ii lies in its potential to aid in nutrient absorption and metabolic processes within the gut environment. By participating in the breakdown of indigestible polysaccharides, this bacterium not only assists in the production of short-chain fatty acids, which are beneficial for colon health, but also contributes to the overall microbial diversity that is vital for maintaining a balanced gut ecosystem. Understanding the specific metabolic capabilities and interactions of Bacteroides uniformis str. 3978 T3 ii can provide insights into its role in gut health and its contributions to host-microbe interactions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe 1339349 JNHN00000000.1 Bac0012587 Escherichia coli 3-373-03_S4_C2 "Escherichia coli 3-373-03_S4_C2 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cell arrangement characterized by pairs and singles, which is typical for many Escherichia coli strains. It thrives optimally at a temperature of 37.0°C, aligning with the physiological temperature of many mammalian hosts, suggesting its adaptation to life within such organisms.↵↵As a facultative anaerobe, E. coli 3-373-03_S4_C2 is capable of surviving in both aerobic and anaerobic conditions, allowing it to exploit a range of ecological niches within the host. This metabolic flexibility may contribute to its resilience and versatility in various microenvironments, particularly within the gastrointestinal tract of mammals, where oxygen levels can vary significantly.↵↵The specific pairing and single-cell arrangement may also reflect its interactions within the host microbiome, potentially influencing its competitive dynamics with other microbial inhabitants. Understanding these traits of E. coli 3-373-03_S4_C2 provides insight into its ecological role, as its adaptability to both aerobic and anaerobic conditions may play a crucial part in maintaining microbial homeostasis in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444252 JNMS00000000.1 Bac0012588 Devosia sp. LC5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. LC5 1502724 JNNO00000000.1 Bac0012589 Helicobacter pullorum strain 229334/12 "Helicobacter pullorum strain 229334/12 is a Gram-negative, microaerophilic bacterium. This strain is characterized by its ability to thrive in environments with reduced oxygen levels, which is a notable trait among members of the Helicobacter genus. The microaerophilic nature of H. pullorum suggests that it may occupy specific ecological niches where oxygen concentration is lower than that of the atmosphere, such as the gastrointestinal tracts of certain hosts.↵↵As a member of the Helicobacter genus, H. pullorum is associated with avian species, particularly poultry, where it has been isolated. Its Gram-negative cell wall structure, typical of many bacteria in this group, is composed of a thin peptidoglycan layer surrounded by an outer membrane, which can confer certain advantages in terms of antibiotic resistance and immune evasion.↵↵The microaerophilic requirement of strain 229334/12 may influence its metabolic pathways and interactions within its host environment, potentially contributing to unique symbiotic or commensal relationships. Understanding the specific oxygen requirements and growth conditions of this strain can provide insights into its ecological role, particularly in the context of avian microbiomes. Further exploration of H. pullorum's metabolic capabilities could reveal its contributions to nutrient cycling and overall host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pullorum Negative Microaerophile 35818 JNOC00000000.1 Bac0012590 Escherichia coli 2-210-07_S3_C3 "Escherichia coli 2-210-07_S3_C3 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or singles. This strain thrives optimally at 37.0°C, which aligns with the temperature of the human body, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli 2-210-07_S3_C3 can grow in both aerobic and anaerobic environments, allowing it to exploit various niches within its host.↵↵The ability to exist in diverse oxygen conditions may confer a competitive advantage in fluctuating environments, such as those found within the gastrointestinal tract of host organisms. E. coli is known for its metabolic versatility, which is likely reflected in this strain as well, enabling it to utilize a range of substrates for growth and survival. This adaptability may play a role in its interactions with the host microbiota, potentially influencing nutrient absorption and overall gut health.↵↵Overall, the traits of Escherichia coli 2-210-07_S3_C3 highlight its ecological role as a versatile inhabitant of host-associated environments, where it may contribute to the complex dynamics of microbial communities within the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444180 JNQA00000000.1 Bac0012591 Escherichia coli 2-177-06_S3_C2 "Escherichia coli 2-177-06_S3_C2 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It has an optimal growth temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, highlighting its adaptation to a host-associated habitat.↵↵The Gram-negative nature of E. coli 2-177-06_S3_C2 suggests a complex cell envelope structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This structural feature contributes to its resilience in various environments and can play a role in its interactions with host organisms.↵↵Given its facultative anaerobic metabolism, E. coli 2-177-06_S3_C2 can efficiently utilize available oxygen when present, but also possesses metabolic pathways to survive in low-oxygen conditions. This flexibility may enhance its survival in diverse ecological niches within the host, where oxygen levels can fluctuate.↵↵Understanding the traits of E. coli 2-177-06_S3_C2 can provide insights into its potential roles in microbial communities associated with hosts, particularly in how it may interact with other microorganisms and contribute to the overall dynamics of the host-associated microbiome. Its ability to adapt to varying oxygen levels may also influence its interactions with the host's immune system and its contribution to the host's metabolic processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444151 JNQF00000000.1 Bac0012592 Marine Group I thaumarchaeote SCGC AAA799-E16 AAA799E16_202 Thermoproteati Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-E16 1502292 JNVL00000000.1 Bac0012593 Gammaproteobacteria bacterium MFB021 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium MFB021 1492922 JNVT00000000.1 Bac0012594 Bifidobacterium longum subsp. longum 17-1B seq20 "Bifidobacterium longum subsp. longum 17-1B seq20 is a Gram-positive, non-sporulating, anaerobic rod that typically occurs in clusters, pairs, or as single cells. This strain is adapted to a host-associated habitat, indicating its prevalence in the gastrointestinal tract of various mammals, where it plays a significant role in gut microbiota composition and function. The optimal growth temperature for this strain is 37.0°C, which aligns with the physiological conditions of the human body, suggesting its specialization for living in a warm host environment.↵↵As a member of the Bifidobacterium genus, this strain is likely involved in the fermentation of dietary fibers, producing beneficial short-chain fatty acids that contribute to gut health and may influence the immune system. The anaerobic nature of Bifidobacterium longum subsp. longum 17-1B seq20 suggests a metabolic pathway that thrives in low-oxygen environments, typical of the intestinal niche it occupies. ↵↵Furthermore, the presence of this strain in the gut microbiome underscores its potential role in maintaining gut homeostasis and possibly modulating host-microbe interactions. Understanding the specific contributions of Bifidobacterium longum subsp. longum 17-1B seq20 to the microbial community dynamics and host health could provide valuable insights into probiotic applications and gut-related health interventions." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 JNVZ00000000.1 Bac0012595 Bifidobacterium longum subsp. longum EK13 seq39 "Bifidobacterium longum subsp. longum EK13 seq39 is a Gram-positive, nonsporulating rod-shaped bacterium that typically forms clusters, pairs, or single cells. As an anaerobic microbe, it thrives in environments devoid of oxygen, which aligns with its habitat as a host-associated organism. The optimal growth temperature for this strain is 37.0°C, suggesting a physiological adaptation to the warm-blooded hosts it is likely associated with.↵↵This strain's nonsporulating nature implies a reliance on stable environments for survival, indicating that it may play a specialized role in the gut microbiota of its host. The presence of Bifidobacterium species, including EK13 seq39, in the gastrointestinal tract is often linked to beneficial effects on host health, including the modulation of gut microbiota composition and enhancement of immune responses. ↵↵A notable ecological insight is the potential role of Bifidobacterium longum subsp. longum EK13 seq39 in maintaining gut homeostasis. Its anaerobic lifestyle and specific growth conditions may influence its interactions with other microbial communities, highlighting its importance in the complex ecosystem of the gut microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 JNWD00000000.1 Bac0012596 Endozoicomonas elysicola strain DSM 22380 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Endozoicomonas Endozoicomonas elysicola 305900 JOJP00000000.1 Bac0012597 Acetobacter malorum strain DmCS_005 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter malorum 178901 JOJU00000000.1 Bac0012598 Pseudomonas putida strain MC4-5222 "Pseudomonas putida strain MC4-5222 is a Gram-negative, rod-shaped bacterium that exists as single cells and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is nonsporulating and is classified as a heterotroph, utilizing organic compounds as its energy source. Pseudomonas putida strain MC4-5222 is typically found in soil and wastewater habitats, where it plays a role in nutrient cycling and the degradation of organic materials.↵↵The adaptability of this strain to various oxygen conditions and its metabolic versatility underscore its potential utility in bioremediation processes, particularly in environments contaminated with organic pollutants. Given its presence in wastewater, Pseudomonas putida strain MC4-5222 may contribute to the breakdown of complex organic substances, thereby enhancing wastewater treatment efficiency. This highlights its ecological importance in maintaining soil health and promoting the detoxification of contaminated environments, making it a subject of interest for further studies in environmental microbiology and biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 JOJW00000000.1 Bac0012599 Halomonas salina strain CIFRI 1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas halophila 29573 JOKD00000000.1 Bac0012600 Pseudorhizobium pelagicum strain R1-200B4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Pseudorhizobium Pseudorhizobium pelagicum 1509405 JOKI00000000.1 Bac0012601 Helicobacter pylori strain Col2025 C8643 "Helicobacter pylori strain Col2025 C8643 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of its typical host environment. As a member of the Helicobacter genus, strain Col2025 C8643 is notably associated with the gastric niche of various hosts, where it likely plays a role in complex interactions within the gastrointestinal microbiome.↵↵The microaerophilic nature of H. pylori strains, including Col2025 C8643, indicates that it requires reduced oxygen levels for optimal growth, a condition often found in the gastric mucosa. This adaptation may confer advantages in colonizing the harsh acidic environment of the stomach, where the presence of oxygen is limited. ↵↵Understanding the specific traits of strain Col2025 C8643 enhances our knowledge of the ecological and biological roles that such spirilla may play in their host environments. The solitary arrangement of the cells suggests a potential strategy for adaptation and survival in competitive microbial ecosystems, where individual bacteria may navigate host defenses and varying nutrient availability in unique ways. Further studies could elucidate the specific ecological interactions and adaptations of this strain within its host-associated habitat." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JOKW00000000.1 Bac0012602 Limosilactobacillus reuteri strain TMW1.112 "Limosilactobacillus reuteri strain TMW1.112 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism, allowing it to thrive in varied habitats. This strain is notable for its adaptability to diverse environments, which suggests a potential versatility in its ecological niches. The ability to grow both in the presence and absence of oxygen may facilitate its survival in fluctuating conditions, such as those found in the gastrointestinal tracts of various hosts, as well as in fermented foods where oxygen levels can vary. ↵↵The chain formation of L. reuteri TMW1.112 could indicate a unique mode of colony development that may enhance its survival and competitiveness in natural and cultivated environments. This trait may also influence its interactions with other microbial species, contributing to its ecological role in microbial communities. Given its multiple habitat adaptability and facultative anaerobic nature, Limosilactobacillus reuteri strain TMW1.112 could be an important player in both gut microbiomes and food fermentation processes, further highlighting the significance of lactic acid bacteria in health and food production." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 JOKX00000000.2 Bac0012603 Acetobacter sp. DmW_043 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter sp. DmW_043 1670658 JOMN00000000.1 Bac0012604 Acetobacter orientalis strain DmW_045 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter orientalis 146474 JOMO00000000.1 Bac0012605 Escherichia coli 5-366-08_S1_C3 "Escherichia coli 5-366-08_S1_C3 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cellular arrangement primarily in pairs and singles, which is characteristic of many E. coli strains. It thrives optimally at a temperature of 37.0°C, a temperature that aligns with the physiological conditions of its typical mammalian hosts.↵↵As a facultative anaerobe, E. coli 5-366-08_S1_C3 possesses the metabolic flexibility to utilize both aerobic and anaerobic respiration, allowing it to adapt to varying oxygen levels within its habitat. This trait is particularly advantageous in the dynamic environments of the gastrointestinal tract, where oxygen availability may fluctuate. ↵↵The host-associated nature of this strain suggests its potential involvement in interactions with the host microbiome, which could influence nutrient absorption and immune responses. Understanding the specific roles of E. coli strains like 5-366-08_S1_C3 in host-associated ecosystems contributes to our broader comprehension of microbial ecology and the complex relationships that underpin health and disease in host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444102 JONE00000000.1 Bac0012606 Acetobacter orientalis strain DmW_048 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter orientalis 146474 JOOY00000000.1 Bac0012607 Acetobacter senegalensis strain DmL_050 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter senegalensis 446692 JOOZ00000000.1 Bac0012608 Acetobacter malorum strain DsW_057 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter malorum 178901 JOPG00000000.1 Bac0012609 Acetobacter okinawensis strain DsW_060 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter okinawensis 1076594 JOPJ00000000.1 Bac0012610 Escherichia coli 5-366-08_S1_C1 "Escherichia coli 5-366-08_S1_C1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which enhances its adaptability to various ecological niches. The optimal growth temperature for this strain is 37.0 °C, a temperature that coincides with the physiological conditions found in many warm-blooded hosts, suggesting a potential association with host organisms.↵↵The habitat of E. coli 5-366-08_S1_C1 is primarily host-associated, which is characteristic of many E. coli strains that inhabit the intestines of mammals, where they play roles in digestion and nutrient absorption. The ability to survive in different oxygen conditions allows this strain to occupy diverse microenvironments within the host, potentially influencing its metabolic activities and interactions with the host microbiome.↵↵Understanding the specific traits of E. coli 5-366-08_S1_C1 contributes to the broader knowledge of microbial dynamics in host-associated environments. Given its facultative anaerobic nature and optimal growth temperature, this strain may participate in complex metabolic interactions within the gut, impacting both its own survival and the overall health of its host. Such insights may inform further studies on the role of E. coli in gut microbiota composition and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444047 JOQU00000000.1 Bac0012611 Escherichia coli 1-392-07_S4_C3 "Escherichia coli 1-392-07_S4_C3 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which corresponds to the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli 1-392-07_S4_C3 is classified as a facultative anaerobe, which allows it to grow in both the presence and absence of oxygen, showcasing its versatility in various environments within host organisms. ↵↵The combination of its Gram-negative cell wall structure and rod shape contributes to the strain's physiological resilience, enabling it to occupy diverse niches in the gastrointestinal tract of its hosts. Given that E. coli is commonly associated with the intestinal microbiota, this strain may play a role in nutrient processing and maintaining gut homeostasis. Furthermore, its facultative anaerobic metabolism suggests that it can adapt to fluctuating oxygen levels encountered within host environments, potentially influencing its interactions with both the host and other microbial species. Thus, the ecological significance of E. coli 1-392-07_S4_C3 may extend beyond its basic metabolic functions, potentially impacting microbial community dynamics and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444275 JOSH00000000.1 Bac0012612 Escherichia coli 1-392-07_S4_C1 "Escherichia coli 1-392-07_S4_C1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a common characteristic of many Escherichia coli strains. It has an optimal growth temperature of 37.0°C, aligning with the typical mammalian host body temperature, suggesting an adaptation to life within host organisms.↵↵The habitat of E. coli 1-392-07_S4_C1 is primarily host-associated, implying that it is commonly found in association with living organisms, potentially in the intestinal tract of mammals. This ecological niche may facilitate interactions with the host's microbiome, influencing both microbial diversity and host health. The ability to adapt to different oxygen conditions further enhances its survival and metabolic versatility in diverse environments within the host.↵↵While the virulence and specific interactions of E. coli 1-392-07_S4_C1 are not detailed here, its characteristics suggest that it could play a role in maintaining gut homeostasis or contributing to nutrient absorption in its host. Understanding the traits and behavior of this strain could provide insights into the complex dynamics of host-microbe interactions and the importance of microbial adaptability in varying physiological conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444219 JOSK00000000.1 Bac0012613 Escherichia coli 1-250-04_S3_C2 "Escherichia coli 1-250-04_S3_C2 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, reflecting its adaptation to host-associated environments, where it can be found in various mammalian hosts. As a facultative anaerobe, E. coli 1-250-04_S3_C2 has the metabolic flexibility to grow in both the presence and absence of oxygen, allowing it to colonize diverse niches within the host's microbiome.↵↵The Gram-negative cell wall structure of E. coli 1-250-04_S3_C2, characterized by a thin peptidoglycan layer surrounded by an outer membrane, may contribute to its resilience against certain environmental stresses, including the presence of antimicrobial agents. The ability to exist in pairs or as singles could facilitate interactions with other microbial species or host cells, potentially influencing community dynamics within the host-associated habitat.↵↵Understanding the traits of E. coli 1-250-04_S3_C2 may provide insights into its role within the gastrointestinal microbiome, where it may contribute to metabolic processes or compete with other microorganisms for resources. Such ecological interactions are essential for maintaining microbial balance and host health, highlighting the importance of studying specific strains to elucidate their functional contributions in complex biological systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1444163 JOSR00000000.1 Bac0012614 Limosilactobacillus reuteri strain LTH2584 "Limosilactobacillus reuteri strain LTH2584 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. L. reuteri is known to inhabit a variety of ecological niches, suggesting a versatile adaptability to different habitats.↵↵The facultative anaerobic nature of L. reuteri strain LTH2584 allows it to thrive in diverse environments, which may include the gastrointestinal tracts of animals and humans, as well as fermented food products. This adaptability highlights the strain's potential for various applications in food technology and probiotics, where it can contribute beneficially to gut microbiota.↵↵Furthermore, the ability of this strain to form chains may influence its interaction with other microbial species, as well as its colonization capabilities in host environments. Understanding the cellular arrangement and growth characteristics of L. reuteri strain LTH2584 can provide insights into its functional roles in microbial communities and its potential benefits in promoting gut health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 JOSX00000000.1 Bac0012615 Marine Group I thaumarchaeote SCGC AAA799-P11 AAA799P11_127 Thermoproteati Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-P11 1502295 JOSZ00000000.1 Bac0012616 Marine Group I thaumarchaeote SCGC AAA799-B03 AAA799B03_123 Thermoproteati Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-B03 1502289 JOTA00000000.1 Bac0012617 Marine Group I thaumarchaeote SCGC RSA3 SCCGRSA3_107_1148 Thermoproteati Nitrososphaerota Marine Group I thaumarchaeote SCGC RSA3 1503183 JOTD00000000.1 Bac0012618 Bacillus zhangzhouensis strain DW5-4 "Bacillus zhangzhouensis strain DW5-4 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under aerobic conditions. This strain demonstrates optimal growth at a temperature of 32.0°C, suggesting a preference for moderate thermal environments. As a member of the Bacillus genus, it is likely to possess the ability to form resilient spores, which are critical for survival in fluctuating environmental conditions.↵↵The aerobic nature of B. zhangzhouensis strain DW5-4 indicates its reliance on oxygen for metabolic processes, positioning it within ecosystems where oxygen availability is sufficient. The ability to sporulate may confer advantages in nutrient-limited environments or during periods of stress, allowing the organism to endure unfavorable conditions. ↵↵This strain's growth characteristics may provide insights into its potential applications in biotechnology, particularly in processes where temperature control and oxygen levels are critical. Furthermore, the presence of spore-forming capabilities could make B. zhangzhouensis strain DW5-4 a candidate for biocontrol agents or industrial applications, where stability and resilience are essential. Overall, the ecological role of this bacterium in its native habitat may involve nutrient cycling and interactions with other microbial communities, further underscoring its potential significance in environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus zhangzhouensis Gram-positive rod aerobic 32 mesophilic spore-forming 1178540 JOTP00000000.1 Bac0012619 Polaribacter sp. Hel1_85 PHEL85d Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. Hel1_85 1250005 JPDS00000000.1 Bac0012620 Chryseobacterium sp. P1-3 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. P1-3 1517683 JPEQ00000000.1 Bac0012621 Mangrovimonas yunxiaonensis strain LY01 "Mangrovimonas yunxiaonensis strain LY01 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 32.0°C. This strain, isolated from mangrove environments, exhibits characteristics typical of many marine bacteria, including its adaptability to saline conditions and its potential role in nutrient cycling within its habitat. The Gram-negative cell wall structure may confer specific advantages, such as resistance to certain antibiotics and the ability to interact with diverse microbial communities. ↵↵Due to its aerobic nature, M. yunxiaonensis strain LY01 likely contributes to the degradation of organic matter and the utilization of oxygen in its ecological niche, potentially influencing the overall biogeochemical processes within mangrove ecosystems. The strain's optimal growth temperature of 32.0°C suggests a preference for warm, tropical environments, aligning with the thermal conditions found in mangrove habitats. ↵↵Understanding the traits and behaviors of Mangrovimonas yunxiaonensis strain LY01 may provide valuable insights into the ecological functions of mangrove-associated microorganisms, particularly in relation to organic carbon processing and the maintenance of ecosystem health in these biodiverse coastal regions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mangrovimonas Mangrovimonas yunxiaonensis Gram-negative rod motile aerobic 32 mesophilic 1197477 JPFK00000000.1 Bac0012622 Streptococcus mitis strain SK608 "Streptococcus mitis strain SK608 is a Gram-positive cocci bacterium that typically forms chains and pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Streptococcus mitis is primarily host-associated, suggesting a close relationship with its host organisms, which may include humans and other mammals.↵↵The chain and pair arrangement of cells is characteristic of the Streptococcus genus, which plays a significant role in various biological processes, including those related to oral and respiratory health. The facultative anaerobic nature of strain SK608 indicates that it can adapt to different oxygen levels, enabling it to colonize diverse niches within the host environment. This adaptability may contribute to its ability to persist in various anatomical sites, such as the oral cavity, throat, and potentially other mucosal surfaces.↵↵Understanding the traits of Streptococcus mitis strain SK608 provides insight into its potential roles in host-associated microbiomes. Given its presence in the human microbiota, this strain may influence host health and disease states, highlighting the importance of maintaining a balanced microbial community for optimal physiological function. Further research may elucidate its specific interactions within these ecosystems and its contributions to host-microbe dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 JPFZ00000000.1 Bac0012623 Burkholderia cepacia strain DWS 37UF10B-2 "Burkholderia cepacia strain DWS 37UF10B-2 is a Gram-negative, microaerophilic bacterium. This strain is characterized by its ability to thrive in environments with reduced oxygen levels, which distinguishes it from obligate aerobes and anaerobes. As a member of the Burkholderia genus, it possesses metabolic versatility that allows it to adapt to various ecological niches, although specific metabolic pathways and substrates utilized by strain DWS 37UF10B-2 are not detailed here.↵↵The microaerophilic nature of Burkholderia cepacia strain DWS 37UF10B-2 suggests that it could be isolated from environments such as waterlogged soils or biofilms, where oxygen concentration is lower than atmospheric levels. Understanding this strain's adaptation to microaerobic conditions could provide insights into its ecological role in nutrient cycling, particularly in environments that experience fluctuating oxygen levels. This trait may also offer potential applications in bioremediation or in the biotechnological utilization of this strain for specific metabolic processes under controlled low-oxygen conditions. Further studies would be necessary to elucidate the full scope of its ecological interactions and potential applications." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 JPGD00000000.1 Bac0012624 Burkholderia gladioli strain ATCC 25417 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia gladioli Yes phyllosphere 28095 JPGG00000000.1 Bac0012625 Leptospirillum ferriphilum strain DSM 14647 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferriphilum 178606 JPGK00000000.1 Bac0012626 [Candidatus Thermochlorobacteriaceae] bacterium GBChlB Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae [Candidatus Thermochlorobacteriaceae] bacterium GBChlB 1519464 JPGV00000000.1 Bac0012627 Burkholderia pseudomallei strain BES "Burkholderia pseudomallei strain BES is a Gram-negative, rod-shaped bacterium that primarily inhabits terrestrial environments and exhibits an aerobic lifestyle. This strain is part of the Burkholderia genus, which is known for its diverse metabolic capabilities and environmental resilience. As an aerobic organism, Burkholderia pseudomallei strain BES requires oxygen for growth, which is a characteristic feature that affects its distribution and ecological interactions in soil and other terrestrial habitats.↵↵The Gram-negative cell wall structure of this strain is indicative of its potential responses to environmental stressors, including antibiotics and immune responses from host organisms. The rod shape of Burkholderia pseudomallei strain BES may confer advantages in motility and nutrient acquisition in its terrestrial habitat. ↵↵Investigations into the ecological roles of Burkholderia pseudomallei strain BES could provide insights into its interactions with other soil microbiota, as well as its potential contributions to nutrient cycling in terrestrial ecosystems. Understanding the specific environmental conditions that favor the growth and survival of this strain may also shed light on its adaptability and resilience in various ecological niches. Such knowledge could be crucial for comprehending the broader ecological dynamics involving this microbe in its native habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 28450 JPHA00000000.1 Bac0012628 Xanthomonas axonopodis pv. vasculorum strain NCPPB 900 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas axonopodis 53413 JPHD00000000.2 Bac0012629 Acinetobacter baumannii MRSN 3527 12_dA "Acinetobacter baumannii MRSN 3527 12_dA is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for warmer environments, which may correlate with its adaptation to host-associated niches. As a chemoheterotroph, A. baumannii MRSN 3527 12_dA derives its energy from organic compounds, allowing it to exploit a variety of substrates in diverse habitats. ↵↵Its classification as an aerobic organism suggests a dependency on oxygen for growth, which is a critical factor in its ecological interactions. Given that Acinetobacter species are known to inhabit multiple environments, including soil, water, and human-associated settings, A. baumannii MRSN 3527 12_dA may play a role in the microbial dynamics of these ecosystems. ↵↵The broad habitat range and metabolic versatility of A. baumannii strains like MRSN 3527 12_dA are indicative of their potential resilience in changing environments, which could be advantageous for survival in competitive microbial communities. This trait may also facilitate their persistence in clinical settings, emphasizing the importance of understanding their ecological roles." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 JPHZ00000000.1 Bac0012630 Shewanella sp. cp20 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. cp20 1521167 JPII00000000.1 Bac0012631 Pseudidiomarina atlantica strain MCCC 1A10513 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina atlantica 1517416 JPIN00000000.1 Bac0012632 Vibrio sp. ER1A Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. ER1A 1517681 JPJA00000000.1 Bac0012633 Nonlabens ulvanivorans strain PLR Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens ulvanivorans 906888 JPJI00000000.1 Bac0012634 Gallibacterium anatis strain 12158-5 "Gallibacterium anatis strain 12158-5 is a Gram-negative bacterium characterized by its unique cellular structure and biochemical properties. This strain is part of the Gallibacterium genus, which is known for its association with avian hosts, particularly poultry. As a Gram-negative organism, Gallibacterium anatis exhibits a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that can influence its interactions within the host environment.↵↵The strain's Gram-negative status suggests potential implications for its susceptibility to certain antibiotics and its ability to evade host immune responses, although specific details regarding its antibiotic resistance profile or pathogenicity are not provided in the current data. Gallibacterium anatis is often studied within the context of avian microbiology, where it may play a role in the complex microbial communities found in the gut of birds.↵↵A notable ecological insight regarding Gallibacterium anatis strain 12158-5 is its potential role in the gut microbiota of avian species, which can influence nutrient absorption and overall health of the host. The interactions between this microbe and its avian hosts may also contribute to the maintenance of gut homeostasis, highlighting the importance of Gallibacterium anatis in avian microbiomes and its potential impact on poultry farming and management practices. Further research on this strain could elucidate its specific interactions within avian ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis negative 750 JPJK00000000.1 Bac0012635 Gallibacterium anatis strain 23K10 "Gallibacterium anatis strain 23K10 is a Gram-negative bacterium characterized by its distinctive cellular morphology and structural properties. This strain is a member of the genus Gallibacterium, which is known for its association with avian species, particularly within the context of poultry. The Gram-negative nature of strain 23K10 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, contributing to its overall resilience and response to environmental conditions.↵↵As with other members of the Gallibacterium genus, strain 23K10 is likely to exhibit a range of metabolic capabilities, although specific metabolic traits are not detailed in the provided data. The genus is generally noted for its versatility in various environments, which may suggest that strain 23K10 could play a role in microbial communities associated with avian hosts or their habitats.↵↵An intriguing aspect of Gallibacterium anatis strains, including strain 23K10, is their potential involvement in the microbial dynamics within poultry environments. Their presence may influence the health and microbiome composition of avian species, possibly affecting nutrient cycling and interactions with other microbial flora. This highlights the significance of Gallibacterium anatis strain 23K10 not only as a microbial entity but also as a potential contributor to the ecological balance within avian ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis negative 750 JPJO00000000.1 Bac0012636 Gallibacterium anatis 4895 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis 1396510 JPJQ00000000.1 Bac0012637 Escherichia coli strain G1/2 "Escherichia coli strain G1/2 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, which coincides with the body temperature of many warm-blooded hosts, suggesting an adaptation to a host-associated habitat. E. coli strain G1/2 is classified as a facultative anaerobe, enabling it to grow in both aerobic and anaerobic environments, thus enhancing its survival and metabolic versatility within diverse ecological niches.↵↵The ability of this strain to exist in a host-associated habitat indicates its potential role in the microbial communities that inhabit the gastrointestinal tract of mammals, where it may interact with other microbial species and contribute to processes such as nutrient metabolism and gut health. Furthermore, the facultative anaerobic lifestyle of E. coli strain G1/2 may allow it to exploit various microenvironments within the host, adapting to fluctuating oxygen levels. This adaptability could provide insights into the dynamics of microbial populations within the host and the role of E. coli strains in maintaining a balanced intestinal microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 JPKH00000000.1 Bac0012638 Escherichia coli G3/10 "Escherichia coli G3/10 is a Gram-negative, rod-shaped bacterium known for its adaptability to various environments, primarily inhabiting host-associated niches. This strain typically arranges itself in pairs or as singles, demonstrating a versatile growth pattern that allows for diverse interactions within its habitats. E. coli G3/10 thrives optimally at a temperature of 37.0°C, mirroring the human body temperature, which suggests an adaptation to warm-blooded hosts.↵↵As a facultative anaerobe, E. coli G3/10 possesses the capability to grow in both aerobic and anaerobic conditions, enabling it to efficiently utilize available oxygen while also surviving in environments where oxygen is limited. This metabolic flexibility is a characteristic feature of many E. coli strains, facilitating their prevalence in various ecological niches, including the gastrointestinal tracts of mammals.↵↵The presence of E. coli G3/10 in host-associated habitats highlights its potential role in microbial communities, where it may contribute to processes such as nutrient cycling and gut health. Understanding the specific interactions and functions of this strain within its ecological context could provide valuable insights into its significance in host-microbiome dynamics and its potential applications in biotechnology or health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1455601 JPKI00000000.1 Bac0012639 Tatumella morbirosei strain LMG 23360 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Tatumella morbirosei 642227 JPKR00000000.2 Bac0012640 Dyella japonica DSM 16301 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella japonica 1440762 JPLA00000000.1 Bac0012641 Xanthomonas hyacinthi DSM 19077 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hyacinthi 1440765 JPLD00000000.1 Bac0012642 Epilithonimonas lactis strain LMG 24401 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas lactis 421072 JPLY00000000.1 Bac0012643 Chryseobacterium sp. FH1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. FH1 1233951 JPLZ00000000.1 Bac0012644 Clostridium sulfidigenes strain 113A "Clostridium sulfidigenes strain 113A is a Gram-positive, spore-forming rod that thrives under anaerobic conditions, with an optimal growth temperature of 32.0°C. This bacterium is part of the Clostridia class, which is characterized by its ability to form endospores, allowing it to survive in harsh environmental conditions. The anaerobic nature of C. sulfidigenes strain 113A indicates its reliance on fermentation or other anaerobic metabolic pathways for energy production, typically utilizing sulfur compounds in its metabolic processes.↵↵The ability to form spores is a significant trait, as it facilitates the bacterium's resilience and persistence in environments where nutrients may be scarce or where it may be exposed to unfavorable conditions. This characteristic is particularly relevant for microorganisms inhabiting anaerobic niches, such as sediments or decaying organic matter, where competition and environmental stresses can be prevalent.↵↵In terms of its ecological role, C. sulfidigenes strain 113A may play a vital part in biogeochemical cycles, particularly those involving sulfur. By utilizing sulfur compounds, it may contribute to the reduction of sulfates to sulfides, thus participating in the cycling of sulfur in its environment. This metabolic capability could have implications for nutrient cycling in anaerobic ecosystems, potentially influencing the composition and function of microbial communities within these habitats." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sulfidigenes Gram-positive rod anaerobic 32 mesophilic spore-forming 318464 JPMD00000000.1 Bac0012645 Lacrimispora celerecrescens strain 152B Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Lacrimispora celerecrescens pit mud 29354 JPME00000000.1 Bac0012646 Archangium violaceum Cb vi76 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum 1406225 JPMI00000000.1 Bac0012647 Modestobacter caceresii strain KNN 45-2b asc16_sequence_0149 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Modestobacter Modestobacter caceresii 1522368 JPMX00000000.1 Bac0012648 Escherichia coli strain G6/7 "Escherichia coli strain G6/7 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a characteristic feature of many E. coli strains. G6/7 is optimally adapted to a temperature of 37.0°C, which coincides with the normal body temperature of warm-blooded hosts, suggesting a close association with such organisms.↵↵The habitat of E. coli strain G6/7 is primarily host-associated, indicating that it is often found in the intestines of mammals, where it plays a role in the gut microbiota. The adaptability of this strain to fluctuating oxygen levels, combined with its optimal growth temperature, positions it well for survival in dynamic host environments. ↵↵Understanding the traits of E. coli strain G6/7 can provide insights into its potential roles within the host's microbiome, contributing to metabolic processes or influencing host health. Its facultative anaerobic nature may allow it to coexist with other microbial communities, emphasizing the importance of such strains in maintaining microbial diversity and functionality within the gastrointestinal tract. This adaptability underscores the ecological significance of E. coli strains in host-associated environments, reflecting their potential contributions to nutrient cycling and overall gut health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 JPMZ00000000.1 Bac0012649 Phaeodactylibacter xiamenensis strain KD52 Pseudomonadati Bacteroidota Saprospiria Saprospirales Haliscomenobacteraceae Phaeodactylibacter Phaeodactylibacter xiamenensis 1524460 JPOS00000000.1 Bac0012650 Sphingobium yanoikuyae strain B1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium yanoikuyae 13690 JPOU00000000.1 Bac0012651 Sphingobium sp. ba1 seq0017 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. ba1 1522072 JPPQ00000000.1 Bac0012652 Streptomyces scabiei strain NCPPB 4086 "Streptomyces scabiei strain NCPPB 4086 is a Gram-positive bacterium characterized by its tailed morphology and aerobic growth requirements. This strain is known for its ability to sporulate, a trait that is typical of the Streptomyces genus, which allows it to survive in various terrestrial environments. The sporulating capability not only facilitates its reproduction but also enhances its resilience against adverse conditions.↵↵As a member of the Streptomyces genus, S. scabiei is likely to produce a range of secondary metabolites, including antibiotics and enzymes, which are characteristic of this group. Its terrestrial habitat suggests that it may play a role in soil ecology, potentially influencing nutrient cycling and organic matter decomposition. The ability to sporulate may also enable S. scabiei to persist in fluctuating environmental conditions, aiding in its survival and distribution within soil ecosystems.↵↵Overall, the unique morphological and physiological traits of Streptomyces scabiei strain NCPPB 4086 underscore its potential significance in terrestrial microbiomes, particularly in terms of its interactions with soil nutrients and its contribution to the diversity of microbial life in these environments." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces scabiei Positive Tailed Yes Aerobic Mesophilic Terrestrial Free living Sporulating Plant 1930 JPPX00000000.1 Bac0012653 Streptomyces stelliscabiei strain P3825 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces stelliscabiei 146820 JPPZ00000000.1 Bac0012654 Massilia sp. JS1662 GAT452 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. JS1662 1519190 JPQD00000000.1 Bac0012655 Escherichia coli strain 48 "Escherichia coli strain 48 is a Gram-negative rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of many warm-blooded hosts, further indicating its adaptation to a host-associated habitat. E. coli strain 48 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, which enhances its ability to colonize various niches within the host.↵↵The Gram-negative nature of E. coli strain 48 suggests the presence of an outer membrane containing lipopolysaccharides, contributing to its structural integrity and potentially influencing interactions with the host's immune system. The rod shape and the cellular arrangement may provide advantages in terms of motility and nutrient acquisition, facilitating its survival in competitive microbial communities within the host.↵↵Given its facultative anaerobic metabolism and optimal growth temperature, E. coli strain 48 is well-suited for colonization in the gastrointestinal tract of warm-blooded animals, where it plays a role in nutrient processing. The strain's ability to thrive in a host-associated environment underscores its potential significance in microbial ecology, particularly in relation to the dynamic interactions between host and microbiota, which are essential for maintaining gut health and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 JPQG00000000.1 Bac0012656 Pseudomonas syringae strain GAW0119 "Pseudomonas syringae strain GAW0119 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it relies on organic compounds for its energy and growth. Pseudomonas syringae, as a genus, is known for its versatility in various habitats, suggesting that strain GAW0119 may thrive in diverse environmental conditions. Additionally, it is an aerobic organism, which means it requires oxygen for metabolic processes.↵↵The ecological adaptability of Pseudomonas syringae strain GAW0119 could allow it to occupy various niches within different ecosystems, potentially contributing to nutrient cycling and organic matter degradation. Its ability to live in multiple habitats highlights its importance in environmental microbiology and its potential role in supporting plant health and soil fertility. Understanding the traits of this strain may offer insights into the ecological dynamics of microbial communities in which it resides, particularly in relation to its interactions with plant hosts and other microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 JPQU00000000.1 Bac0012657 Vibrio owensii CAIM 1854 = LMG 25443 strain DY05 "Vibrio owensii CAIM 1854, also known as LMG 25443 strain DY05, is a Gram-negative, facultative anaerobic bacterium predominantly isolated from the Changjiang estuary and associated with coral macroalgae symbiomes in intertidal marine environments. This organism exhibits versatile metabolic capabilities, allowing it to thrive in varying oxygen conditions typical of its estuarine habitat. ↵↵The association of V. owensii with coral-associated macroalgae suggests a potential role in the intricate ecological dynamics of marine ecosystems, particularly in nutrient cycling or as part of the microbial community that supports coral health. Its presence in intertidal zones indicates an adaptation to fluctuating environmental conditions, including changes in salinity and nutrient availability, which are characteristic of such habitats.↵↵Research into V. owensii may provide insights into the microbial interactions within coral reef systems, highlighting its potential contributions to the overall health and resilience of these ecosystems. Understanding the specific roles and interactions of V. owensii within its habitat could illuminate broader ecological principles governing microbial communities in marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio owensii negative 1 facultative anaerobe Changjiang estuary; coral-associated macroalgae symbiome; intertidal zone; Marine Animal 696485 JPRD00000000.1 Bac0012658 Chryseobacterium piperi strain CTM Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium piperi aerobic 558152 JPRJ00000000.1 Bac0012659 Chryseobacterium sp. JM1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. JM1 1233950 JPRN00000000.1 Bac0012660 Chryseobacterium formosense strain LMG 24722 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium formosense aerobic 236814 JPRP00000000.1 Bac0012661 Cryobacterium sp. MLB-32 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium sp. MLB-32 1529318 JPRS00000000.1 Bac0012662 Pseudomonas sp. BRG-100 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. BRG-100 1524267 JPRX00000000.1 Bac0012663 Leptospira interrogans serovar Lai strain SR61 "Leptospira interrogans serovar Lai strain SR61 is a Gram-negative, spiral-shaped bacterium classified within the genus Leptospira. This species thrives optimally at a temperature of 28.0°C and exhibits an aerobic metabolism, requiring oxygen for its growth and survival. L. interrogans serovar Lai strain SR61 is notably host-associated, indicating a relationship with specific hosts, which may facilitate its transmission and persistence in natural environments.↵↵The structure of L. interrogans, particularly its spirilla morphology, contributes to its motility and ability to navigate through viscous environments, such as those found in host tissues or fluids. The host-associated nature of this strain suggests that it may have adapted to specific ecological niches within its host, potentially influencing its physiological characteristics and interactions with the host immune system.↵↵Understanding the environmental preferences and requirements of L. interrogans serovar Lai strain SR61 can provide insights into its ecological role, particularly in relation to its association with animal hosts. This relationship underscores the importance of maintaining ecological balance, as disturbances in the habitat or host populations may impact the dynamics of this microbe and its potential role in disease transmission. Such insights are crucial for developing effective management strategies in environments where this bacterium may be present." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 173 JPUB00000000.1 Bac0012664 Lysinibacillus sp. BF-4 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. BF-4 1473546 JPUW00000000.1 Bac0012665 Serratia nematodiphila DZ0503SBS1 strain DSM 21420 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia nematodiphila 458197 JPUX00000000.1 Bac0012666 Lysinibacillus odysseyi 34hs-1 = NBRC 100172 "Lysinibacillus odysseyi 34hs-1 (NBRC 100172) is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, a trait commonly associated with resilience in various environmental conditions. This microbe thrives optimally at a temperature of 32.0°C and is obligately aerobic, indicating its reliance on oxygen for metabolic processes.↵↵As a spore-forming organism, L. odysseyi 34hs-1 can withstand adverse conditions, which may contribute to its survival and persistence in various habitats. The Gram-positive nature of this bacterium suggests a thick peptidoglycan layer in its cell wall, which is characteristic of this group and may play a role in its structural integrity and defense mechanisms against environmental stressors.↵↵While specific ecological roles and interactions have not been detailed, the ability of L. odysseyi 34hs-1 to form spores and its aerobic metabolism indicate potential applications in bioremediation or soil health, particularly in environments where oxygen is available and conditions fluctuate. The organism’s traits may also suggest a capacity for nutrient cycling, particularly in aerobic environments, where it could contribute to the degradation of organic matter or the transformation of soil constituents. The study of this bacterium could yield insights into its ecological significance and potential beneficial uses in agricultural or environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus odysseyi Gram-positive rod aerobic 32 mesophilic spore-forming 1220589 JPVP00000000.1 Bac0012667 Tetragenococcus muriaticus 3MR10-3 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus muriaticus 1302648 JPVT00000000.1 Bac0012668 Thalassospira profundimaris strain R8-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira profundimaris 502049 JPWB00000000.1 Bac0012669 Thalassospira profundimaris strain R4-5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira profundimaris 502049 JPWC00000000.1 Bac0012670 Thalassospira profundimaris strain PB8B Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira profundimaris 502049 JPWE00000000.1 Bac0012671 Thalassospira profundimaris strain 35 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira profundimaris 502049 JPWF00000000.1 Bac0012672 Thalassospira profundimaris strain PR54-5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira profundimaris 502049 JPWI00000000.1 Bac0012673 [Arthrobacter] sp. ATCC 21022 strain KY 3901 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter [Arthrobacter] sp. ATCC 21022 1771959 JPWK00000000.1 Bac0012674 Helicobacter pylori strain YN4-84 "Helicobacter pylori strain YN4-84 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average human body temperature, reinforcing its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, strain YN4-84 is typically found in the gastric environment of its host, where it plays a role in the complex microbiota of the gastrointestinal tract. Its microaerophilic nature indicates that it requires reduced levels of oxygen for optimal growth, which is consistent with the low-oxygen conditions of the stomach lining where it colonizes. ↵↵The ecological insight into Helicobacter pylori strain YN4-84 suggests that its specific adaptations not only facilitate its survival in a challenging environment but may also influence the overall composition of the gastric microbiome. This interplay between H. pylori and its host-associated habitat underscores the importance of studying such strains to understand their role in health and disease within gastric ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JPXD00000000.1 Bac0012675 Cryobacterium roopkundense strain RuG17 "Cryobacterium roopkundense strain RuG17 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth temperature of 16.0°C. This strain exhibits distinct morphological and physiological traits typical of the genus Cryobacterium, which is known for its psychrotolerant capabilities, allowing it to thrive in cold environments. ↵↵The Gram-positive nature of C. roopkundense RuG17 indicates a robust peptidoglycan layer in its cell wall, which can provide resilience in various environmental conditions. The rod shape of the bacterium is indicative of its cell division and growth patterns, which may contribute to its ecological adaptability. Given its optimal temperature preference of 16.0°C, this strain is likely well-suited for habitats that experience cooler climates, such as high-altitude regions or polar environments.↵↵Aerobic growth requirements suggest that C. roopkundense RuG17 engages in metabolic processes that rely on oxygen, which may influence its ecological niche and interactions with other microorganisms in its environment. The combination of these traits points to the strain's potential role in biogeochemical cycles in cold ecosystems, where it may participate in organic matter decomposition and nutrient cycling. This adaptation to low temperatures and the aerobic lifestyle might enable Cryobacterium roopkundense strain RuG17 to be a significant contributor to microbial communities in glacial or subglacial habitats, where it could play a role in shaping local biodiversity and ecological dynamics." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium roopkundense Gram-positive rod aerobic 16 psychrotolerant 1001240 JPXF00000000.1 Bac0012676 Massilia sp. BSC265 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. BSC265 1549812 JPXI00000000.1 Bac0012677 Gallibacterium anatis IPDH697-78 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis 1396514 JPXQ00000000.1 Bac0012678 Achromobacter sp. RTa Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter sp. RTa 1532557 JPYO00000000.1 Bac0012679 Geobacillus stearothermophilus strain 53 "Geobacillus stearothermophilus strain 53 is a rod-shaped, Gram-variable bacterium primarily found in active volcanic areas and in spoiled canned food, indicating its resilience in extreme environments. As an aerobic organism, it requires oxygen for growth and metabolism, which suggests a potential adaptation to oxygen-rich niches within its habitats. ↵↵This strain is part of the Geobacillus genus, which is known for its thermophilic properties, allowing it to thrive in high-temperature environments typically associated with geothermal activity. The presence of this bacterium in spoiled canned food highlights its ability to survive and proliferate under specific conditions that may arise during food processing and storage, particularly when anaerobic environments are inadvertently created.↵↵The ecological insight provided by the existence of Geobacillus stearothermophilus strain 53 in both natural and anthropogenic environments suggests its role in biogeochemical cycles, particularly in the degradation of organic materials in high-temperature settings. Its presence in spoiled food may also indicate its potential utility as a biological indicator in sterilization processes, where its resistance to heat could serve as a benchmark for assessing the efficacy of sterilization protocols. Thus, the study of this strain could not only enhance our understanding of microbial survival strategies but also inform food safety practices." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe thermophilic active volcanic area; spoiled canned food 1422 JPYV00000000.1 Bac0012680 Arthrobacter sp. MWB30 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. MWB30 1534409 JPZK00000000.1 Bac0012681 Dehalogenimonas etheniformans strain GP Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas etheniformans 1536648 JQAN00000000.2 Bac0012682 Fructilactobacillus fructivorans strain ATCC 27394 "Fructilactobacillus fructivorans strain ATCC 27394 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives at an optimal temperature of 30.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, positioning it within a metabolic framework that relies on external sources of carbon and energy. Isolated from dairy environments, F. fructivorans plays a potentially significant role in dairy fermentation processes, contributing to the development of specific flavors and textures in fermented dairy products.↵↵The nonsporulating nature of this strain suggests that it may be sensitive to environmental stresses that typically trigger sporulation in other bacterial species. This characteristic could limit its survival in extreme conditions but also indicates a specialization to stable habitats such as dairy products where conditions may be more conducive to growth. The preference for an optimal growth temperature of 30.0°C aligns well with typical fermentation temperatures used in dairy processing, further emphasizing its relevance in food microbiology.↵↵Understanding the traits of Fructilactobacillus fructivorans strain ATCC 27394 not only enhances knowledge of dairy-associated microorganisms but also underscores the intricate balance of microbial communities in fermented foods. This insight into its habitat and metabolic capabilities highlights its potential utility in biotechnological applications, particularly in the realm of dairy fermentation and preservation." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus fructivorans Positive Rod No 1 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1614 JQAS00000000.1 Bac0012683 Limosilactobacillus fermentum strain DSM 20055 "Limosilactobacillus fermentum strain DSM 20055 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is characterized as a facultative anaerobe, allowing it to thrive in various oxygen conditions, which suggests a versatile metabolic capability. L. fermentum is known to inhabit multiple environments, indicating its ecological adaptability and potential roles in diverse microbial communities.↵↵The ability to grow in both aerobic and anaerobic conditions may give L. fermentum strain DSM 20055 a competitive advantage in fluctuating habitats, allowing it to exploit a wide range of substrates for growth. This trait could be particularly beneficial in environments where oxygen levels vary, such as in fermented food products or the gastrointestinal tracts of various hosts.↵↵Furthermore, the chain arrangement of cells may contribute to its stability and interaction within biofilms or microbial consortia, enhancing its ecological fitness. These characteristics underline the importance of Limosilactobacillus fermentum in fermentation processes and its potential utility in food production and probiotic applications. Further investigation into its metabolic pathways and interactions within microbial communities could provide deeper insights into its ecological roles and applications in biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 JQAU00000000.1 Bac0012684 Lactiplantibacillus plantarum strain DSM 13273 "Lactiplantibacillus plantarum strain DSM 13273 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. Optimal growth occurs at a temperature of 25.0°C, indicating a preference for moderate conditions. ↵↵L. plantarum DSM 13273 is known to inhabit a variety of ecological niches, reflecting its versatile nature and adaptability to different habitats. The ability to exist in diverse environments suggests that this strain may play a role in various microbial communities, potentially contributing to fermentation processes and influencing the composition of the microbiota in its surroundings.↵↵Overall, the traits of L. plantarum DSM 13273 highlight its resilience and ecological significance, particularly in environments where fluctuating oxygen levels and temperatures are present. This adaptability may make it a valuable organism for applications in food fermentation and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 JQAW00000000.1 Bac0012685 Lactobacillus selangorensis strain DSM 13344 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus selangorensis anaerobic / microaerophile 81857 JQAZ00000000.1 Bac0012686 Kandleria vitulina DSM 20405 "Kandleria vitulina DSM 20405 is a Gram-positive, strictly anaerobic bacterium. As a member of the domain Bacteria, it exhibits a morphology characteristic of its classification, being non-spore-forming, which suggests a potential adaptation to its anaerobic lifestyle. The organism thrives in environments devoid of oxygen, indicating its metabolic pathways are likely optimized for fermentation or anaerobic respiration.↵↵The Gram-positive nature of K. vitulina suggests the presence of a thick peptidoglycan layer in its cell wall, which can confer certain advantages in hostile environments, such as resistance to physical stressors and the retention of crystal violet dye during the Gram staining procedure. This trait is typical of many anaerobic bacteria, which often inhabit specialized niches where oxygen levels are minimal or absent.↵↵Further investigation into the metabolic capabilities of K. vitulina could provide insights into its ecological roles, particularly in anaerobic environments such as sediments, gastrointestinal tracts of animals, or other anoxic conditions. The adaptation of K. vitulina to anaerobic environments underscores the significance of anaerobic bacteria in nutrient cycling and organic matter decomposition, which are crucial processes in various ecosystems. Understanding its physiology and ecological interactions may contribute to broader knowledge about microbial diversity and anaerobic processes in nature." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Kandleria Kandleria vitulina Positive Anaerobe 1410657 JQBL00000000.1 Bac0012687 Fructilactobacillus fructivorans strain DSM 20571 "Fructilactobacillus fructivorans strain DSM 20571 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives optimally at a temperature of 30.0 °C. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds rather than through photosynthesis. Isolated from dairy environments, F. fructivorans plays a role in the microbial composition of fermented dairy products.↵↵As a member of the lactic acid bacteria, F. fructivorans is likely involved in the fermentation processes that contribute to the flavor and texture of various dairy products. Its ability to utilize a range of organic substrates may enhance its role in dairy fermentation, potentially influencing the production of lactic acid and other metabolites that are critical to food preservation and safety.↵↵The ecological significance of F. fructivorans in dairy habitats highlights its potential contributions to both the flavor profile of fermented products and the overall microbial balance within these ecosystems. Understanding the specific metabolic pathways and interactions of this strain within its habitat may provide insights into the optimization of dairy fermentation processes and the development of novel dairy products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus fructivorans Positive Rod No 1 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1614 JQBN00000000.1 Bac0012688 Lactobacillus amylovorus subsp. animalium DSM 16698 "Lactobacillus amylovorus subsp. animalium DSM 16698 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an anaerobe. This subspecies thrives in various habitats, indicating its versatile environmental adaptability. As a member of the Lactobacillus genus, it is likely involved in fermentative processes, contributing to the breakdown of carbohydrates, particularly starches. ↵↵The anaerobic nature of L. amylovorus subsp. animalium suggests that it plays a significant role in environments where oxygen is limited, which can include the gastrointestinal tracts of various animals, as well as in fermented food products. Its ability to form chains may enhance its survival in these niches by facilitating interactions with other microbial species and potentially creating biofilms that offer protection from external stressors.↵↵Notably, the presence of this subspecies in multiple habitats highlights its potential importance in microbial ecosystems, where it may contribute to nutrient cycling and the maintenance of microbial community structure. This adaptability could also be leveraged in biotechnological applications, such as in the development of probiotics or fermentation technologies. Further research could elucidate its specific roles in various ecosystems and its potential benefits in food production or animal health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains 695563 JQBQ00000000.1 Bac0012689 Fructilactobacillus lindneri DSM 20690 = JCM 11027 strain DSM Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus lindneri 53444 JQBT00000000.1 Bac0012690 Carnobacterium maltaromaticum strain DSM 20730 "Carnobacterium maltaromaticum strain DSM 20730 is a nonsporulating, facultative anaerobic rod-shaped bacterium that characteristically forms chains. As a chemoheterotroph, this strain derives its energy from organic compounds, making it adaptable to various environments. The ability to thrive in multiple habitats underscores its ecological versatility, which may contribute to its presence in diverse microbial communities.↵↵This strain's facultative anaerobic nature allows it to utilize both aerobic and anaerobic respiration, providing a competitive advantage in fluctuating oxygen conditions. Such adaptability is particularly important in environments where oxygen levels may vary, such as in food preservation settings or specific ecological niches. The ability to form chains may also facilitate its interactions within biofilms, potentially influencing nutrient exchange and community dynamics.↵↵Overall, the ecological significance of Carnobacterium maltaromaticum strain DSM 20730 may lie in its role in organic matter degradation and its potential contributions to food microbiology, particularly in relation to its metabolic capabilities in various environmental contexts." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium maltaromaticum Rod No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 2751 JQBV00000000.1 Bac0012691 Limosilactobacillus secaliphilus strain DSM 17896 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus secaliphilus 396268 JQBW00000000.1 Bac0012692 Furfurilactobacillus siliginis strain DSM 22696 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Furfurilactobacillus Furfurilactobacillus siliginis 348151 JQCB00000000.1 Bac0012693 Companilactobacillus kimchiensis strain DSM 24716 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus kimchiensis 993692 JQCF00000000.1 Bac0012694 Lactobacillus helveticus strain LMG 22464 "Lactobacillus helveticus strain LMG 22464 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain exhibits facultative anaerobic metabolism, enabling it to thrive in both aerobic and anaerobic environments. L. helveticus is known to inhabit a variety of habitats, suggesting its versatility and adaptability to different ecological niches. ↵↵As a member of the Lactobacillus genus, this strain is likely involved in the fermentation processes of dairy products, contributing to the development of flavors and textures in cheese and yogurt. The facultative anaerobic nature of L. helveticus strain LMG 22464 allows it to maintain metabolic activity in diverse environments, which may enhance its role in food production and preservation. ↵↵The ability of this bacterium to grow in multiple habitats underscores its potential significance in microbial ecosystems, where it may interact with other microorganisms and contribute to the stability and functionality of those communities. Understanding the specific adaptations and metabolic pathways of L. helveticus strain LMG 22464 could provide insights into its applications in fermentation technology and probiotic development." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 JQCJ00000000.1 Bac0012695 Ligilactobacillus pobuzihii strain NBRC 103219 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus pobuzihii 449659 JQCN00000000.1 Bac0012696 Paenibacillus wynnii strain DSM 18334 unitig_3_1r "Paenibacillus wynnii strain DSM 18334 unitig_3_1r is a Gram-negative, rod-shaped bacterium that exhibits the capacity for sporulation, allowing it to withstand adverse environmental conditions. This strain thrives optimally at a temperature of 16.0°C and demonstrates facultative aerobe/anaerobe characteristics, enabling it to grow in both oxygen-rich and oxygen-poor environments. ↵↵The ability to form spores is particularly significant, as it suggests a potential role in soil health and nutrient cycling, where sporulation can enhance survival during periods of desiccation or nutrient scarcity. Additionally, the facultative nature of its oxygen requirement indicates that P. wynnii may contribute to various anaerobic processes in diverse habitats, including wetlands or sediments, where oxygen levels fluctuate.↵↵Overall, the unique combination of traits in Paenibacillus wynnii strain DSM 18334 unitig_3_1r positions it as a versatile microorganism that may play an important role in ecological systems, particularly in environments where temperature and oxygen dynamics are variable." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus wynnii Gram-negative rod facultative aerobe/anaerobe 16 psychrotolerant spore-forming 268407 JQCR00000000.1 Bac0012697 Acinetobacter idrijaensis strain MII Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter idrijaensis 1507807 JQCU00000000.1 Bac0012698 Smithella sp. SCADC Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp. SCADC 1499107 JQDQ00000000.1 Bac0012699 Vibrio vulnificus strain 101/4 "Vibrio vulnificus strain 101/4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells in aquatic environments. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and low-oxygen conditions. As a heterotroph, V. vulnificus strain 101/4 relies on organic compounds for energy, which aligns with its ecological niche in diverse aquatic habitats.↵↵The optimal growth temperature for this strain is approximately 20.0°C, indicating a preference for cooler marine or estuarine environments, which can influence its distribution and ecological interactions. Its ability to grow under varying oxygen levels suggests a versatile physiological adaptation that may facilitate its survival in fluctuating environmental conditions.↵↵Understanding the characteristics of V. vulnificus strain 101/4 can provide insights into its ecological role in nutrient cycling within marine ecosystems. The strain's heterotrophic lifestyle may contribute to the breakdown of organic matter, thereby playing a vital part in the microbial food web and influencing the overall health of aquatic environments. Further studies on this strain could elucidate its interactions with other microbial communities and its role in aquatic ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 672 JQDT00000000.1 Bac0012700 Thalassotalea sp. ND16A Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea sp. ND16A 1535422 JQDZ00000000.1 Bac0012701 Colwellia psychrerythraea strain GAB14E "Colwellia psychrerythraea strain GAB14E is a Gram-negative, rod-shaped bacterium that exhibits a unique adaptation to specialized habitats, thriving optimally at a temperature of 8.0°C. This strain is characterized by its ability to grow as single cells, which may confer advantages in nutrient acquisition in its specific ecological niche. As a facultatively anaerobe, C. psychrerythraea strain GAB14E can utilize both aerobic and anaerobic respiration, allowing it to thrive in fluctuating oxygen conditions that may be present in its environment.↵↵The physiological traits of this strain suggest a specialization that enables it to survive in cold marine or deep-sea environments, where temperatures are typically low, and nutrient availability may vary. This adaptability may also play a role in its metabolic versatility, allowing it to exploit various organic substrates in its habitat. As such, C. psychrerythraea strain GAB14E may contribute to biogeochemical processes in its ecosystem, particularly in the degradation of organic matter in cold aquatic environments. Understanding the specific metabolic pathways and ecological roles of this strain could provide insights into microbial life in extreme conditions and its potential implications for nutrient cycling in polar or deep-sea ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea Negative Rod Yes 1 2 Facultatively anaerobe 8 Psychrophilic Specialized Free living Singles 28229 JQEC00000000.1 Bac0012702 Serratia sp. Ag1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. Ag1 1524467 JQEI00000000.1 Bac0012703 Devosia riboflavina strain IFO13584 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia riboflavina 46914 JQGC00000000.1 Bac0012704 Sulfurospirillum sp. SCADC Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. SCADC 1537915 JQGK00000000.1 Bac0012705 Sulfuricurvum sp. MLSB Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. MLSB 1537917 JQGL00000000.1 Bac0012706 Desulfosporosinus sp. Tol-M Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus sp. Tol-M 1536651 JQID00000000.1 Bac0012707 Sulfurovum sp. FS08-3 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. FS08-3 1539065 JQIS00000000.1 Bac0012708 Porphyromonas crevioricanis strain COT-253 OH2125 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas crevioricanis oral cavity; subgingival plaque 393921 JQJB00000000.1 Bac0012709 Acidihalobacter prosperus strain DSM 5130 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Acidihalobacter Acidihalobacter prosperus 160660 JQSG00000000.2 Bac0012710 Solemya velum gill symbiont strain WH Pseudomonadati Pseudomonadota Gammaproteobacteria Solemya velum gill symbiont 2340 JRAA00000000.1 Bac0012711 Porphyromonas gulae strain COT-052 OH3439 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gulae gingival crevicular fluid; oral cavity; subgingival plaque 111105 JRAK00000000.1 Bac0012712 Porphyromonas sp. COT-290 OH860 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. COT-290 OH860 1515615 JRAR00000000.1 Bac0012713 Porphyromonas macacae strain COT-192 OH2859 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas macacae gingival crevicular fluid; oral cavity; subgingival plaque 28115 JRFA00000000.1 Bac0012714 Methanococcoides methylutens strain DSM 2657 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides methylutens 2226 JRHO00000000.1 Bac0012715 Streptococcus suis strain NJAU-TF-202 202_C1590 "Streptococcus suis strain NJAU-TF-202 202_C1590 is a Gram-positive coccus that predominantly exhibits a characteristic arrangement in chains, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, indicating its potential adaptation to warm-blooded hosts. As a facultative anaerobe, it can grow in both aerobic and anaerobic conditions, which may reflect its versatility in various environments.↵↵The habitat of S. suis strain NJAU-TF-202 202_C1590 is described as specialized, suggesting that it occupies a niche where specific growth conditions are met. This specialization may facilitate its survival and proliferation in particular ecological settings, potentially influencing its interactions within microbial communities.↵↵Given the strain's growth preferences and environmental adaptability, it may play a unique role in the microbial dynamics of its habitat, contributing to nutrient cycling and possibly affecting the populations of cohabiting microorganisms. Further studies could elucidate the ecological functions of this strain and its interactions within its specialized environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 JRHU00000000.1 Bac0012716 Hoeflea sp. BAL378 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Hoeflea Hoeflea sp. BAL378 1547437 JRJG00000000.1 Bac0012717 Paracoccus halophilus strain JCM 14014 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus halophilus 376733 JRKN00000000.1 Bac0012718 Paracoccus sanguinis strain 5503 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sanguinis 1545044 JRKQ00000000.1 Bac0012719 Flavobacterium daejeonense strain RCH33 "Flavobacterium daejeonense strain RCH33 is a Gram-negative, rod-shaped bacterium that is non-spore-forming and exhibits an aerobic metabolism. This strain thrives optimally at a temperature of 32.0°C, suggesting a preference for mesophilic environments commonly found in moderate-temperature habitats. The aerobic nature of F. daejeonense RCH33 indicates that it requires oxygen for growth, which may influence its ecological niche and interactions within microbial communities.↵↵The characteristics of this strain place it within the broader context of the Flavobacterium genus, known for its diverse metabolic capabilities and roles in various environments, particularly in aquatic ecosystems. While the specific ecological role of F. daejeonense RCH33 remains to be fully elucidated, its aerobic lifestyle implies potential involvement in the degradation of organic materials in oxygen-rich environments. This could contribute to nutrient cycling and the maintenance of microbial diversity in its native habitat.↵↵Further investigation into the metabolic pathways and environmental interactions of Flavobacterium daejeonense strain RCH33 may provide insights into its functional role within its ecosystem and its potential applications in biotechnology or environmental management." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium daejeonense Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 350893 JRLG00000000.1 Bac0012720 Flavobacterium beibuense F44-8 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium beibuense 1406840 JRLV00000000.1 Bac0012721 Flavobacterium suncheonense GH29-5 = DSM 17707 strain GH29-5 "Flavobacterium suncheonense GH29-5, also cataloged as DSM 17707 strain GH29-5, is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under aerobic conditions. This microorganism exhibits optimal growth at a temperature of 32.0°C, which suggests a preference for mesophilic environments. ↵↵As a member of the Flavobacteria class, F. suncheonense is likely to contribute to various biogeochemical processes, particularly in aquatic ecosystems, where its metabolic capabilities may play a role in the degradation of organic materials. The Gram-negative nature of this organism indicates the presence of an outer membrane, which is characteristic of this group and can influence its interactions within microbial communities. ↵↵Understanding the physiological and ecological roles of F. suncheonense GH29-5 is essential for elucidating its potential applications in biotechnology and environmental sciences. Further research may reveal how its metabolic pathways can be harnessed for bioremediation or other biotechnological innovations, particularly in nutrient-rich aquatic environments. The specific temperature preference also raises questions about its adaptability and the potential influence of climate variations on its distribution and activity in natural habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium suncheonense Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 350894 JRLW00000000.1 Bac0012722 Flavobacterium rivuli WB 3.3-2 = DSM 21788 strain WB 3.3-2 "Flavobacterium rivuli WB 3.3-2 (DSM 21788) is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and thrives optimally at a temperature of 16.0°C. This strain belongs to the genus Flavobacterium, known for its diverse ecological roles, particularly in aquatic environments. As a member of the Flavobacteriaceae family, F. rivuli WB 3.3-2 may contribute to the decomposition of organic matter, playing a significant role in nutrient cycling within its ecological niche.↵↵The Gram-negative cell wall structure of F. rivuli WB 3.3-2 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may provide advantages in specific habitats by facilitating interactions with other microbial communities. Its rod shape is typical of many members of this genus, allowing for efficient motility and nutrient uptake in aqueous environments.↵↵Given its optimal growth temperature of 16.0°C, F. rivuli WB 3.3-2 is likely adapted to cooler aquatic habitats, such as freshwater lakes or rivers. This temperature preference suggests that it may play an essential role in the microbial communities of cold-water ecosystems, where it could influence the decomposition processes and the overall carbon cycle. Understanding the ecological functions of this strain may provide insights into the dynamics of microbial communities in similar environments, highlighting the significance of temperature in shaping microbial diversity and activity." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium rivuli Gram-negative rod non-motile aerobic 16 psychrotolerant 498301 JRLX00000000.1 Bac0012723 Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 strain WB 4.1-42 "Flavobacterium subsaxonicum WB 4.1-42 (DSM 21790) is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. As a member of the genus Flavobacterium, this strain is characterized by its distinct morphological and physiological traits, which align with the general characteristics of the Flavobacteriaceae family.↵↵The Gram-negative nature of Flavobacterium subsaxonicum WB 4.1-42 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria. This structural feature may influence its environmental interactions and resilience to certain antimicrobial agents. Additionally, the aerobic requirement indicates that this strain relies on oxygen for its metabolic processes, which may influence its habitat preferences, potentially favoring well-aerated environments such as freshwater or soil.↵↵Given the optimal growth temperature of 25.0°C, Flavobacterium subsaxonicum WB 4.1-42 likely occupies ecological niches that are temperate, where such conditions are prevalent. This adaptability to moderate temperatures and aerobic conditions could suggest a role in biogeochemical cycling within its native ecosystem, particularly in the breakdown of organic materials. Further research could elucidate its specific ecological functions and contributions to microbial communities, particularly in environments rich in organic substrates." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium subsaxonicum Gram-negative rod non-motile aerobic 25 mesophilic 426226 JRLY00000000.1 Bac0012724 Flavobacterium enshiense DK69 "Flavobacterium enshiense DK69 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and is non-spore-forming. This species thrives optimally at a temperature of 29.0°C, suggesting a potential adaptation to specific environmental conditions where moderate warmth is prevalent. ↵↵As a member of the genus Flavobacterium, F. enshiense DK69 may share ecological niches with other microorganisms in aquatic environments, although its specific habitats have not been detailed. The Gram-negative cell wall structure of F. enshiense DK69 could play a role in its resistance to certain antimicrobial agents and may influence its interactions with other microbial communities in its environment.↵↵The aerobic nature of this bacterium indicates that it relies on oxygen for its metabolic processes, which may influence its distribution in environments where oxygen levels fluctuate. Understanding the physiological traits of F. enshiense DK69 can provide insights into its ecological role, particularly in biogeochemical cycling within aquatic ecosystems. Its optimal growth temperature suggests that it may be involved in the decomposition of organic materials at moderate temperatures, contributing to nutrient cycling and organic matter breakdown in its habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium enshiense Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1107311 JRLZ00000000.1 Bac0012725 Pseudomonas lutea strain DSM 17257 "Pseudomonas lutea strain DSM 17257 is a Gram-negative, rod-shaped bacterium that exhibits the ability to form spores, suggesting a potential resilience to environmental stressors. This strain thrives optimally at a temperature of 25.0°C and is classified as aerobic, indicating that it requires oxygen for growth and metabolism. The spore-forming capability may enhance its survival in fluctuating environmental conditions, allowing it to endure periods of nutrient scarcity or unfavorable temperatures.↵↵Pseudomonas species are known for their metabolic versatility, and while specific metabolic pathways for strain DSM 17257 are not detailed here, the characteristics of this strain suggest it may play a role in nutrient cycling within its habitat. The ability to form spores could also serve as a survival strategy in natural environments, potentially aiding in colonization and persistence in diverse ecological niches. The aerobic nature of this strain may further indicate its involvement in the degradation of organic compounds in oxygen-rich environments, underscoring its potential significance in biogeochemical processes. Understanding the ecological role of Pseudomonas lutea strain DSM 17257 could provide insights into its utility in bioremediation or other applications where microbial metabolism is harnessed for environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lutea Gram-negative rod aerobic 25 mesophilic spore-forming 243924 JRMB00000000.1 Bac0012726 Actinomyces sp. S4-C9 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. S4-C9 1219581 JRMU00000000.1 Bac0012727 Actinomyces sp. S6-Spd3 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. S6-Spd3 1284680 JRMV00000000.1 Bac0012728 Tissierellia bacterium S5-A11 Bacillati Bacillota Tissierellia Tissierellia bacterium S5-A11 1230730 JRMZ00000000.1 Bac0012729 Clostridiales bacterium S5-A14a Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Clostridiales bacterium S5-A14a 1230734 JRNA00000000.1 Bac0012730 Prevotella sp. S7-1-8 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. S7-1-8 1284775 JRNC00000000.1 Bac0012731 Corynebacterium freneyi DNF00450 "Corynebacterium freneyi DNF00450 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microbe thrives optimally at a temperature of 37.0°C, which suggests a preference for conditions similar to those found in warm-blooded hosts. As a member of the genus Corynebacterium, it is characterized by its unique morphological and biochemical features that distinguish it from other bacterial groups.↵↵The Gram-positive nature of C. freneyi indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environments. Its rod shape and aerobic requirements suggest an adaptation to environments where oxygen is readily available, potentially influencing its ecological niche and interaction with other microorganisms.↵↵Given its optimal growth temperature, C. freneyi may play a role in specific biogeochemical cycles in environments that mimic mammalian body temperatures, such as in association with warm-blooded animals or in human-associated microbiomes. This relationship could provide insights into the microbe’s ecological significance, hinting at potential interactions within microbial communities that are essential for nutrient cycling and overall ecosystem health. Further investigation into its ecological roles and interactions could reveal important aspects of its biology and contributions to microbial diversity." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium freneyi Gram-positive rod non-motile aerobic 37 mesophilic non-spore-forming 1287475 JRNE00000000.1 Bac0012732 Prevotella histicola JCM 15637 = DNF00424 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella histicola 1236504 JRNJ00000000.1 Bac0012733 Peptoniphilus lacrimalis DNF00528 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus lacrimalis anaerobic 1401070 JRNL00000000.1 Bac0012734 Hoylesella buccalis DNF00853 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella buccalis 1401074 JRNN00000000.1 Bac0012735 Prevotella bivia DNF00320 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella bivia 1401068 JRNQ00000000.1 Bac0012736 Prevotella disiens DNF00882 "Prevotella disiens DNF00882 is a Gram-negative, anaerobic bacterium that is part of the diverse genus Prevotella, which is known for its role in various anaerobic environments. As a member of the Bacteroidetes phylum, P. disiens exhibits characteristics typical of its genus, including the ability to thrive in low-oxygen conditions. ↵↵The anaerobic nature of P. disiens suggests that it may play a significant role in the fermentation processes within its ecological niche, possibly contributing to the breakdown of complex carbohydrates in environments such as the human gut or other anaerobic habitats. While specific ecological roles and interactions for this strain remain to be fully elucidated, its classification within the Prevotella genus indicates a potential involvement in microbiota dynamics, particularly in relation to host metabolism and health.↵↵Future studies could provide insights into the metabolic pathways utilized by P. disiens, further clarifying its functional contributions to anaerobic ecosystems and its interactions with other microbial communities. Understanding these dynamics may enhance our knowledge of microbial ecology and the importance of anaerobic bacteria in maintaining ecosystem balance." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella disiens Negative Anaerobe 1401075 JRNR00000000.1 Bac0012737 Prevotella melaninogenica DNF00666 "Prevotella melaninogenica DNF00666 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in host-associated environments as an anaerobe. This microbe is part of the normal microbiota found in various mammalian hosts, where it plays a role in maintaining microbial balance. As an anaerobic organism, P. melaninogenica DNF00666 is adapted to environments with limited oxygen, which is characteristic of many anatomical sites within the host, such as the oral cavity and gastrointestinal tract.↵↵The nonsporulating nature of this strain indicates that it relies on vegetative growth and does not produce spores as a means of survival under adverse conditions. This trait may reflect its ecological niche, where stable, low-oxygen conditions are typically maintained. The presence of P. melaninogenica DNF00666 in host-associated habitats suggests its potential involvement in complex microbial interactions, possibly influencing both the host's health and the composition of the surrounding microbial community.↵↵Understanding the characteristics of P. melaninogenica DNF00666 can provide insight into its functional roles within the microbiome, including its contributions to metabolic processes and its interactions with other microbial species. Its ability to thrive in anaerobic environments could also indicate its significance in nutrient cycling and the overall dynamics of microbial communities in host-associated habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1401073 JRNS00000000.1 Bac0012738 Prevotella amnii DNF00058 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella amnii 1401066 JRNU00000000.1 Bac0012739 Bifidobacterium adolescentis strain IVS-1 "Bifidobacterium adolescentis strain IVS-1 is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in a single-cell arrangement. This strain is classified as an anaerobe, thriving in oxygen-depleted environments, which aligns with its habitat as host-associated, indicating a strong association with the gastrointestinal tract of its host organisms. B. adolescentis strain IVS-1 exhibits optimal growth at 37.0°C, a temperature that corresponds with the physiological conditions of its host, suggesting an adaptation to the warm environment of the mammalian intestine.↵↵The anaerobic nature of this bacterium highlights its potential role in maintaining intestinal homeostasis and contributing to the gut microbiome's overall health. Through metabolic processes that do not require oxygen, Bifidobacterium adolescentis strain IVS-1 likely plays a crucial role in fermenting dietary fibers, producing short-chain fatty acids that can provide energy for colonocytes and contribute to gut health. The presence of this strain in the host-associated environment underlines its importance in symbiotic relationships within the gut microbiota, which may have implications for digestive health and the modulation of immune responses. Overall, B. adolescentis strain IVS-1 exemplifies the intricate interactions between anaerobic bacteria and their host, emphasizing the significance of microbial diversity in maintaining gut health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 JRNZ00000000.1 Bac0012740 Oleiagrimonas soli strain 3.5X "Oleiagrimonas soli strain 3.5X is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain exhibits the typical features associated with Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane that contains lipopolysaccharides. As an aerobic organism, Oleiagrimonas soli strain 3.5X relies on oxygen for its metabolic processes, which suggests it may play a role in environments where oxygen is readily available. ↵↵While specific ecological roles or interactions have not been detailed, the aerobic nature of this strain could indicate its involvement in the degradation of organic matter or other processes in oxygen-rich environments. The characteristics of Oleiagrimonas soli strain 3.5X suggest that it may contribute to nutrient cycling in soil ecosystems, particularly in relation to organic compounds. Further research could elucidate its specific metabolic pathways and interactions with other microbial communities, enhancing our understanding of its ecological significance in its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Oleiagrimonas Oleiagrimonas soli Gram-negative rod aerobic 1543381 JROI00000000.1 Bac0012741 Streptomonospora alba strain YIM 90003 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Streptomonospora Streptomonospora alba 183763 JROO00000000.1 Bac0012742 Bradyrhizobium japonicum strain Is-34 "Bradyrhizobium japonicum strain Is-34 is a Gram-negative bacterium primarily found in soybean fields, where it plays a crucial role in symbiotic nitrogen fixation. This strain is a member of the Rhizobiaceae family and is known for its ability to establish a mutualistic relationship with leguminous plants, particularly soybeans (Glycine max). In this symbiosis, B. japonicum infects the root hairs of the soybean plant, leading to the formation of specialized structures known as root nodules. Within these nodules, the bacterium converts atmospheric nitrogen into ammonia, a nutrient that is readily assimilated by the host plant, thereby enhancing its growth and yield.↵↵The habitat specificity of strain Is-34 underscores its adaptation to the soybean ecosystem, where it contributes to soil fertility and sustainable agriculture practices. The presence of this strain in agricultural settings may also influence the microbial community structure, thereby impacting soil health and nutrient cycling. Understanding the specific interactions of B. japonicum strain Is-34 within soybean fields can provide insights into optimizing crop production and managing soil resources sustainably. This highlights the importance of maintaining beneficial microbial populations in agricultural systems to support plant health and ecosystem resilience." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium japonicum negative soybean fields 375 JRPN00000000.1 Bac0012743 Pseudomonas sp. H2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. H2 658612 JRPO00000000.1 Bac0012744 Prevotella sp. S7 MS 2 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. S7 MS 2 1287488 JRPT00000000.1 Bac0012745 Mycobacterium lepromatosis strain Mx1-22A Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium lepromatosis 480418 JRPY00000000.1 Bac0012746 Actinoplanes utahensis strain NRRL 12052 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes utahensis 1869 JRTT00000000.1 Bac0012747 Acinetobacter venetianus strain LUH5627 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter venetianus 52133 JRUE00000000.1 Bac0012748 Acinetobacter gyllenbergii strain FMP01 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter gyllenbergii 134534 JRVA00000000.1 Bac0012749 Methanosphaera sp. WGK6 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. WGK6 1561964 JRWK00000000.1 Bac0012750 Vibrio sinaloensis strain T08 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sinaloensis 379097 JRWP00000000.1 Bac0012751 Vibrio caribbeanicus strain T14 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio caribbeanicus 701175 JRWR00000000.1 Bac0012752 Neochlamydia sp. TUME1 DB41_CI Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. TUME1 1478174 JRXI00000000.1 Bac0012753 Candidatus Scalindua brodae Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Scalinduaceae Candidatus Scalindua Candidatus Scalindua brodae 237368 JRYO00000000.1 Bac0012754 Massilia aurea strain CFS-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia aurea aerobic 373040 JSAB00000000.1 Bac0012755 Parachlamydia acanthamoebae strain OEW1 DB43_DF Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae 83552 JSAM00000000.1 Bac0012756 Candidatus Protochlamydia amoebophila strain EI2 DB44_HJ Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila 362787 JSAN00000000.1 Bac0012757 Acinetobacter baumannii strain 1 "Acinetobacter baumannii strain 1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in a variety of habitats. This organism is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon sources, which reflects its adaptability to diverse environments. The optimal growth temperature for strain 1 is 37.0 degrees Celsius, aligning with conditions often found in warm-blooded hosts as well as various ecological niches. Notably, A. baumannii strain 1 is an aerobe, requiring oxygen for its metabolic processes, which may influence its distribution in environments where oxygen is readily available.↵↵The ability of A. baumannii strain 1 to inhabit multiple habitats suggests a high level of ecological versatility, allowing it to survive in both natural and man-made environments. This adaptability may also facilitate its persistence in healthcare settings, where it can be found in various biofilms and surfaces. Understanding the ecological roles and interactions of A. baumannii strain 1 within its environments can provide insights into its survival mechanisms and potential impacts on microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 JSAO00000000.1 Bac0012758 Dokdonia donghaensis DSW-1 "Dokdonia donghaensis DSW-1 is a Gram-negative, aerobic, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival in its environment. The morphological characteristics of D. donghaensis DSW-1, combined with its specific metabolic requirements, suggest an adaptation to particular ecological niches where aerobic conditions prevail and moderate temperatures are common.↵↵The preference for aerobic respiration may indicate the bacterium's role in biogeochemical cycles, potentially influencing organic matter decomposition and nutrient cycling in marine environments. Its isolation from seawater suggests a possible involvement in the marine microbiome, where it may interact with other microbial communities and contribute to the overall health and stability of its ecosystem. Understanding the traits of D. donghaensis DSW-1 could provide insights into the functional diversity of marine bacteria and their ecological roles in oceanic environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia donghaensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1300343 JSAQ00000000.1 Bac0012759 Aphanizomenon flos-aquae 2012/KM1/D3 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae 1532906 JSDP00000000.1 Bac0012760 Bifidobacterium bifidum strain 85B "Bifidobacterium bifidum strain 85B is a Gram-positive, non-sporulating rod-shaped bacterium that is predominantly associated with host environments, indicating its role as a commensal organism in the gastrointestinal tract of mammals. As an anaerobe, this strain thrives in low-oxygen conditions, which is typical for the intestinal microbiota, where it contributes to the complex microbial ecosystem.↵↵B. bifidum strain 85B is known for its potential beneficial effects on gut health, including the fermentation of dietary fibers and production of short-chain fatty acids, which may play a role in maintaining gut homeostasis. Given its habitat within the host, this bacterium is likely involved in various symbiotic interactions that support host nutrition and immune function. ↵↵The unique adaptation of B. bifidum strain 85B to anaerobic environments showcases its evolutionary specialization within the gut microbiome, where it likely engages in metabolic processes that are crucial for both microbial community dynamics and host health. Understanding the specific metabolic pathways utilized by this strain could provide insights into its contributions to gut microbiota stability and overall host well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 JSDU00000000.1 Bac0012761 Bifidobacterium bifidum strain LMG 11583 "Bifidobacterium bifidum strain LMG 11583 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments and is primarily associated with host organisms. This strain is part of the Bifidobacterium genus, which is well-known for its beneficial roles in the gastrointestinal microbiota of various mammals, including humans. As an anaerobe, B. bifidum strain LMG 11583 requires environments devoid of oxygen to survive and grow, which aligns with its habitat as a host-associated microbe.↵↵Given its nonsporulating nature, this strain does not produce spores, which is a characteristic that often influences its survival and reproduction in specific ecological niches. The adaptation to host-associated habitats suggests that B. bifidum strain LMG 11583 may play a significant role in maintaining gut health and contributing to the balance of the microbial community. Furthermore, the presence of such bacteria in the gastrointestinal tract can influence nutrient absorption, immune system modulation, and overall host well-being. ↵↵The specific adaptation of B. bifidum strain LMG 11583 to anaerobic conditions as a commensal organism highlights the intricate relationships between gut microbiota and their hosts, emphasizing the potential importance of this strain in probiotic applications and gut health maintenance." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 JSDZ00000000.1 Bac0012762 Sulfurospirillum sp. MES Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. MES 1565314 JSEC00000000.1 Bac0012763 Marinomonas sp. TW1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. TW1 1561203 JSEE00000000.1 Bac0012764 Labrenzia sp. OB1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Labrenzia Labrenzia sp. OB1 1561204 JSEP00000000.1 Bac0012765 Pseudomonas chlororaphis strain EA105 "Pseudomonas chlororaphis strain EA105 is a Gram-negative, rod-shaped bacterium primarily associated with the nodules of Chamaecytisus albus, as well as inhabiting the rhizosphere and root nodules of various plants. This strain exemplifies the diverse functional roles that Pseudomonas species can play in plant-associated environments. ↵↵The ability of P. chlororaphis strain EA105 to colonize root nodules suggests a potential involvement in plant-microbe interactions, which may contribute to the nitrogen cycle or other plant growth-promoting activities. Its presence in the rhizosphere indicates a possible role in nutrient cycling and soil health, highlighting its ecological importance in supporting plant growth and resilience.↵↵Overall, the specific association of Pseudomonas chlororaphis strain EA105 with Chamaecytisus albus nodules underscores the complex relationships between soil bacteria and plants, potentially influencing plant health and ecosystem dynamics. Further investigation into its metabolic capabilities and interactions within its habitat may reveal additional functions that contribute to the sustainability of its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis negative Rod nodules of Chamaecytisus albus; rhizosphere; root nodules 587753 JSFK00000000.1 Bac0012766 Mameliella alba strain UMTAT08 "Mameliella alba strain UMTAT08 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and has an optimal growth temperature of 25.0 °C. This strain is characterized by its distinct morphology, typical of many members within the phylum Proteobacteria, which often exhibit rod shapes and are known for their diverse metabolic capabilities. The Gram-negative nature of Mameliella alba strain UMTAT08 suggests a complex cell wall structure, which may contribute to its adaptability in various environments.↵↵As an aerobic organism, this strain requires oxygen for growth, positioning it to inhabit environments where oxygen is readily available. The preference for an optimal temperature of 25.0 °C indicates that strain UMTAT08 may be well-suited to moderate climates or specific ecological niches that maintain such thermal conditions. This temperature preference could also suggest a potential role in various biogeochemical cycles that occur within temperate ecosystems.↵↵Given its aerobic lifestyle and optimal growth conditions, Mameliella alba strain UMTAT08 may play a significant role in the degradation of organic matter in its natural habitat, potentially influencing nutrient cycling and microbial community dynamics. Further studies are warranted to explore its ecological interactions and contributions within its specific environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Mameliella Mameliella alba Gram-negative rod non-motile aerobic 25 mesophilic 561184 JSUQ00000000.1 Bac0012767 Helicobacter pylori strain 1152/04 "Helicobacter pylori strain 1152/04 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of the human host, indicating its adaptation to a host-associated habitat. ↵↵H. pylori is well-known for its colonization of the gastric mucosa, where it can survive in the acidic environment of the stomach. The microaerophilic nature of this strain suggests that it requires oxygen levels lower than those found in the atmosphere, which is consistent with the oxygen conditions typically present in the gastric environment. ↵↵The combination of these traits underscores the specialized ecological niche occupied by H. pylori strain 1152/04 within the human gastrointestinal tract. Its ability to thrive in a host-associated habitat may also reflect its evolutionary adaptations, which allow it to evade the host's immune responses while maintaining a stable presence in the gastric ecosystem. Understanding these traits can provide insights into the bacterium's interactions with the host and its potential role in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JSUZ00000000.1 Bac0012768 Roseivirga seohaensis subsp. aquiponti strain D-25 Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga seohaensis 1914963 JSVA00000000.1 Bac0012769 Candidatus Jidaibacter acanthamoeba strain UWC36 NF27_KH Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Candidatus Midichloriaceae Candidatus Jidaibacter Candidatus Jidaibacter acanthamoebae 86105 JSWE00000000.1 Bac0012770 Phaeobacter sp. S60 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter sp. S60 1569353 JSWJ00000000.1 Bac0012771 Enterobacter cloacae strain CH1 "Enterobacter cloacae strain CH1 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in varied oxygen conditions. This strain is part of the Enterobacter genus, which is characterized by its versatility in inhabiting multiple environments. Enterobacter cloacae has been isolated from diverse habitats, including soil, water, and various plant surfaces, reflecting its ecological adaptability.↵↵The facultative anaerobic nature of E. cloacae strain CH1 enables it to utilize both aerobic respiration and fermentation pathways, which may confer a competitive advantage in fluctuating oxygen levels commonly found in its natural habitats. This metabolic flexibility suggests a potential role in nutrient cycling, particularly in environments where oxygen availability is inconsistent.↵↵Moreover, the ability of E. cloacae strain CH1 to inhabit multiple ecological niches underscores its significance in microbial ecosystems, possibly contributing to interactions with other microorganisms and influencing community dynamics. Further studies could elucidate the specific roles this strain plays in its environments and its potential interactions with other microbial species, enhancing our understanding of microbial ecology and the functional diversity within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 JSWZ00000000.1 Bac0012772 Pectobacterium fontis strain M022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium fontis 2558042 JSXC00000000.1 Bac0012773 Helicobacter pylori strain 207/99 "Helicobacter pylori strain 207/99 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is adapted to a microaerophilic environment, thriving optimally at a temperature of 37.0°C, which corresponds to the typical body temperature of its host. Strain 207/99 is primarily found in host-associated habitats, indicating a close symbiotic relationship with its biological environment.↵↵As a member of the Helicobacter genus, this strain is notable for its ability to survive in the acidic conditions of the stomach, which may contribute to its persistence and potential role in host interactions. The microaerophilic nature of H. pylori suggests a specialized adaptation to environments with lower oxygen levels, which is consistent with its gastric niche. ↵↵The unique physiological traits of Helicobacter pylori strain 207/99, particularly its spirilla morphology and microaerophilic requirements, may provide insights into its ecological roles within the gastrointestinal microbiome. Understanding these traits can enhance our knowledge of microbial survival strategies and interactions within the host, potentially influencing digestive health and disease states associated with H. pylori." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JSXU00000000.1 Bac0012774 Helicobacter pylori strain 1846/05 "Helicobacter pylori strain 1846/05 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the arrangement of cells in singles. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the physiological conditions found within the gastric environment of its host. ↵↵As a member of the Helicobacter genus, H. pylori is primarily associated with the gastric mucosa of humans and other animals, highlighting its role as a host-associated microbe. The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for optimal growth, which is consistent with the low-oxygen conditions present in the stomach. ↵↵The unique combination of these traits suggests that H. pylori strain 1846/05 may have evolved specific adaptations to survive and proliferate in the acidic environment of the stomach, potentially contributing to its role in gastric colonization. This adaptation could also provide insight into the evolutionary pressures faced by H. pylori in host-associated habitats, where competition with other microorganisms and the host's immune responses shape its survival strategies. The ability to thrive under microaerophilic conditions may further influence its interactions with the host and the microbiome, warranting further investigation into its ecological dynamics within the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JSXV00000000.1 Bac0012775 Kaistella solincola strain DSM 22468 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella solincola 510955 JSYK00000000.1 Bac0012776 Flavobacterium sp. AED Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. AED 1423323 JSYM00000000.1 Bac0012777 Flavobacterium sp. KMS Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. KMS 1566023 JSYP00000000.1 Bac0012778 Pseudomonas fuscovaginae strain IRRI 6609 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas asplenii aerobic 53407 JSYZ00000000.1 Bac0012779 Candidatus Thiomargarita nelsonii Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Thiomargarita Candidatus Thiomargarita nelsonii 1003181 JSZA00000000.2 Bac0012780 Acinetobacter sp. neg1 seq_16 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. neg1 1561068 JSZD00000000.1 Bac0012781 Ralstonia sp. A12 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. A12 1217052 JSZO00000000.1 Bac0012782 Burkholderia sp. USMB20 PL79_7_0 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. USMB20 1571773 JTAN00000000.2 Bac0012783 Hassallia byssoidea VB512170 Bacillati Cyanobacteriota Cyanophyceae Nostocales Tolypothrichaceae Hassallia Hassallia byssoidea 1304833 JTCM00000000.2 Bac0012784 Helicobacter pylori strain 499/02 "Helicobacter pylori strain 499/02 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which is consistent with its adaptation to host-associated environments. H. pylori strain 499/02 exhibits microaerophilic oxygen requirements, indicating that it requires reduced levels of oxygen to survive and grow.↵↵As a member of the Helicobacter genus, this strain is typically found in the gastric mucosa of its hosts, where it may engage in complex interactions with the host's immune system and gastric environment. The microaerophilic nature of H. pylori suggests that it has evolved specialized metabolic pathways to utilize the low-oxygen conditions present in the stomach, enabling it to colonize this unique habitat effectively.↵↵The specific ecological niche occupied by H. pylori strain 499/02 highlights the adaptability of microbial life to extreme environments and underscores the importance of studying its physiological traits to understand its role in host-associated ecosystems. The ability of H. pylori to survive in the acidic gastric milieu while requiring microaerobic conditions may provide insights into its evolutionary strategies and potential interactions with the host's microbiota, further emphasizing the complexity of host-microbe relationships." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 JTDG00000000.1 Bac0012785 Novosphingobium malaysiense strain MUSC 273 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium malaysiense 1348853 JTDI00000000.1 Bac0012786 Microbacterium mangrovi strain MUSC 115 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium mangrovi 1348253 JTDK00000000.1 Bac0012787 Croceibacterium mercuriale strain Coronado Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Croceibacterium Croceibacterium mercuriale 1572751 JTDN00000000.1 Bac0012788 Neotamlana sedimentorum strain JCM 19808 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Neotamlana Neotamlana sedimentorum 1435349 JTDW00000000.1 Bac0012789 Pseudomonas putida strain CBB5 "Pseudomonas putida strain CBB5 is a Gram-negative, rod-shaped bacterium that exists as single cells and does not undergo sporulation. As a heterotrophic organism, it derives its energy from organic compounds, which it utilizes efficiently in its natural habitats, primarily found in soil and wastewater environments. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both oxygen-rich and oxygen-poor conditions.↵↵The ability of Pseudomonas putida strain CBB5 to adapt to varying oxygen levels and its metabolic versatility highlight its potential role in bioremediation processes. This bacterium can degrade a wide array of organic pollutants, making it a valuable organism for environmental applications, particularly in the treatment of contaminated sites. Its presence in wastewater indicates an ecological significance in nutrient cycling and organic matter decomposition, contributing to soil health and ecosystem functionality. Overall, Pseudomonas putida strain CBB5 exemplifies the adaptability and ecological importance of microbial life in diverse environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 JTEN00000000.1 Bac0012790 Ectopseudomonas oleovorans strain S1 "Ectopseudomonas oleovorans strain S1 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and requires oxygen for growth. This strain does not undergo sporulation and thrives optimally at a temperature of 30.0°C. Ectopseudomonas oleovorans is known to inhabit diverse environments, indicating its adaptability and potential utility in various ecological niches. ↵↵The organism's aerobic nature suggests that it plays a role in the biogeochemical cycling of carbon and other nutrients in its habitats. Given its energy source and metabolic capabilities, Ectopseudomonas oleovorans strain S1 may contribute to the degradation of organic compounds, thus highlighting its potential importance in bioremediation processes. This adaptability and metabolic versatility underscore the microbe's significance in microbial ecology, particularly in environments where organic pollutants are prevalent." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas oleovorans Negative Rod Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 301 JTFL00000000.1 Bac0012791 Micromonospora sp. HK10 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. HK10 1538294 JTGL00000000.1 Bac0012792 Lyngbya confervoides BDU141951 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Lyngbya Lyngbya confervoides 1574623 JTHE00000000.3 Bac0012793 Paenibacillus sp. A3 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. A3 1337054 JTHN00000000.1 Bac0012794 Thermus sp. 2.9 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. 2.9 1577051 JTJB00000000.1 Bac0012795 Gallibacterium salpingitidis strain F150 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium salpingitidis 505341 JTJL00000000.1 Bac0012796 Gallibacterium genomosp. 3 strain F151 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium genomosp. 3 505345 JTJM00000000.1 Bac0012797 Gallibacterium genomosp. 1 strain CCM 5975 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium genomosp. 1 155515 JTJP00000000.1 Bac0012798 Mycolicibacterium setense strain DSM 45070 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium setense 431269 JTJW00000000.1 Bac0012799 Vibrio renipiscarius strain DCR 1-4-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio renipiscarius 1461322 JTKH00000000.1 Bac0012800 Escherichia coli strain CVM N33561PS "Escherichia coli strain CVM N33561PS is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, suggesting an adaptation to warm-blooded hosts, as it is commonly associated with such environments. As a facultative anaerobe, E. coli strain CVM N33561PS possesses the metabolic flexibility to utilize oxygen when available, but can also survive in anaerobic conditions, allowing it to inhabit diverse ecological niches within host organisms.↵↵The habitat of this strain is noted to be host-associated, indicating its presence in the microbiota of various hosts, potentially including mammals. The association with a host environment underscores its role in symbiotic relationships, which may contribute to the maintenance of gut health and nutrient absorption in the host. Given the adaptability of E. coli to different oxygen levels and its specific thermal preference, strain CVM N33561PS may play a significant role in metabolic processes within its ecological niche, potentially influencing the overall microbial community dynamics in host-associated environments. Understanding the characteristics of this strain can inform further studies on its biological interactions and contributions to host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 JUDN00000000.1 Bac0012801 Stutzerimonas stutzeri strain YC-YH1 "Stutzerimonas stutzeri strain YC-YH1 is a Gram-negative, rod-shaped bacterium that exhibits a single-cell arrangement and is classified as a heterotrophic aerobe. This strain thrives in host-associated environments, indicating a potential symbiotic relationship with its host or a specific ecological niche influenced by host factors.↵↵As a heterotroph, S. stutzeri strain YC-YH1 utilizes organic compounds as its energy source, which may suggest its role in nutrient cycling within host-associated ecosystems. The aerobic nature of this strain implies that it requires oxygen for its metabolic processes, which could influence its distribution and abundance in various host-associated habitats.↵↵The unique combination of traits exhibited by S. stutzeri strain YC-YH1 positions it as a potential player in the microbiome of its host, contributing to the metabolic dynamics and ecological interactions within these communities. Understanding its specific roles and interactions in host-associated environments could provide insights into the broader implications of microbial diversity in maintaining host health and ecosystem functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 JUDR00000000.1 Bac0012802 [Pseudomonas] sp. BICA1-14 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas [Pseudomonas] sp. BICA1-14 1619235 JUEC00000000.2 Bac0012803 Komagataeibacter intermedius AF2 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter intermedius 1458464 JUFX00000000.2 Bac0012804 Morococcus cerebrosus strain CIP 81.93 MCC93_170 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Morococcus Morococcus cerebrosus 1056807 JUFZ00000000.1 Bac0012805 Flavobacterium beibuense strain RSKm HC5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium beibuense 657326 JUIW00000000.1 Bac0012806 Weissella cibaria strain AB3b "Weissella cibaria strain AB3b is a Gram-negative, facultative anaerobic bacterium commonly found in diverse habitats, including Chile Bo, Korean kimchi, pasture, saliva, soil, and tropical fruits. This strain exemplifies the versatility of Weissella species, which are known for their roles in fermentation and their presence in various ecological niches. ↵↵The ability of Weissella cibaria strain AB3b to thrive in both aerobic and anaerobic conditions highlights its adaptability, allowing it to exploit a wide range of environmental resources. Its presence in traditional fermented foods, such as Korean kimchi, suggests potential contributions to food preservation and flavor development through lactic acid fermentation. ↵↵Furthermore, the variety of habitats in which this strain has been identified, including both plant-associated environments and animal-derived substrates like saliva, indicates its potential role in microbial interactions within these ecosystems. These interactions may influence the microbial community dynamics and the overall health of the environments it inhabits.↵↵In summary, Weissella cibaria strain AB3b serves as a model organism for studying microbial versatility and adaptation in fermentation processes and diverse ecological settings, underscoring the importance of such bacteria in both food science and environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella cibaria Negative Facultative anaerobe Chili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits 137591 JWHT00000000.1 Bac0012807 Weissella cibaria strain MG1 "Weissella cibaria strain MG1 is a Gram-negative, facultative anaerobic bacterium that has been isolated from diverse habitats including Korean kimchi, chili Bo, pasture soils, human saliva, and tropical fruits. This strain exhibits a versatile metabolic capability, allowing it to thrive in various anaerobic and aerobic environments, which is indicative of its adaptability to different ecological niches.↵↵The presence of Weissella cibaria strain MG1 in traditional fermented foods like kimchi suggests its potential role in fermentation processes, contributing to flavor development and preservation. Additionally, its detection in human saliva highlights possible interactions with the oral microbiome, although further research is required to elucidate its specific functions in this environment.↵↵Given its wide distribution across different substrates, Weissella cibaria strain MG1 may play a significant role in nutrient cycling within its habitats, particularly in the context of organic matter decomposition and microbial community dynamics. This adaptability not only underscores the ecological versatility of this strain but also positions it as a candidate for further studies into its applications in food science and microbiome research." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella cibaria Negative Facultative anaerobe Chili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits 137591 JWHU00000000.1 Bac0012808 Pseudoalteromonas luteoviolacea strain HI1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas luteoviolacea 43657 JWIC00000000.1 Bac0012809 Bacillus thermotolerans strain MTCC 8252 "Bacillus thermotolerans strain MTCC 8252 is a Gram-positive, ovoid-shaped bacterium characterized by its ability to form spores and thrive optimally at a temperature of 45.0°C. This strain exhibits facultative aerobe/anaerobe metabolic capabilities, allowing it to survive in both aerobic and anaerobic environments. The ability to form spores is particularly significant, as it may contribute to its resilience under fluctuating environmental conditions, enabling the strain to withstand extreme temperatures and nutrient limitations.↵↵The optimal growth temperature of 45.0°C suggests that Bacillus thermotolerans strain MTCC 8252 may inhabit thermophilic environments where it could play a role in nutrient cycling. Its facultative nature indicates a versatile metabolic strategy that could allow this bacterium to exploit diverse ecological niches, potentially aiding in organic matter decomposition in various habitats. This adaptability, combined with its spore-forming ability, positions Bacillus thermotolerans strain MTCC 8252 as a microbe of interest for studies on thermal stability and resilience in microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thermotolerans Gram-positive ovoid non-motile facultative aerobe/anaerobe 45 thermophilic spore-forming 1221996 JWIR00000000.2 Bac0012810 Agrobacterium arsenijevicii strain KFB 330 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium arsenijevicii 1585697 JWIT00000000.1 Bac0012811 Muribacter muris strain Ackerman80-443D Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Muribacter Muribacter muris microaerophile 67855 JWIZ00000000.1 Bac0012812 Noviherbaspirillum autotrophicum strain TSA66 "Noviherbaspirillum autotrophicum strain TSA66 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. This strain is optimally active at a temperature of 29.0°C, suggesting a preference for mesophilic environments that are commonly encountered in natural and engineered ecosystems. ↵↵As a facultative anaerobe, N. autotrophicum strain TSA66 can utilize both aerobic and anaerobic metabolic pathways, which may enable it to adapt to diverse substrates and environmental conditions. This versatility may play a significant role in its ecological niche, potentially allowing it to participate in nutrient cycling processes, particularly in environments where oxygen levels fluctuate. ↵↵Understanding the physiological traits of N. autotrophicum strain TSA66 can provide insights into its potential applications in bioremediation or bioenergy production, where microbial adaptability is crucial for the effective degradation of organic materials or the conversion of substrates into biofuels. The ability to thrive under varying oxygen concentrations may also contribute to its resilience in competitive microbial communities, highlighting its potential significance in microbial ecology and biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Noviherbaspirillum Noviherbaspirillum autotrophicum Gram-negative rod motile facultative aerobe/anaerobe 29 mesophilic 709839 JWJG00000000.1 Bac0012813 Rhizobium nepotum 39/7 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium nepotum 1368418 JWJH00000000.1 Bac0012814 Leisingera sp. ANG-M1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera sp. ANG-M1 1577895 JWLC00000000.1 Bac0012815 Ruegeria sp. ANG-R Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. ANG-R 1577903 JWLJ00000000.1 Bac0012816 Tateyamaria sp. ANG-S1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tateyamaria Tateyamaria sp. ANG-S1 1577905 JWLL00000000.1 Bac0012817 Salmonella enterica subsp. houtenae serovar 50:g "Salmonella enterica subsp. houtenae serovar 50:g is a Gram-negative microbe characterized by its spirilla shape and its tendency to form chains and singles. This bacterium thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a chemoorganotroph, S. enterica subsp. houtenae serovar 50:g utilizes organic compounds as its energy source, further supporting its association with hosts that provide a nutrient-rich environment. ↵↵This microbe exhibits microaerophilic growth, suggesting that it requires reduced oxygen levels for optimal metabolism, a trait that may influence its ecological niche within the host. The microaerophilic nature points to potential interactions with the host's immune responses and the microbiota, which may regulate the local oxygen levels in the host's environment. This unique adaptation may facilitate its survival and proliferation within specific niches in the host, highlighting the intricate balance between microbial inhabitants and their hosts in maintaining health and homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 JWSP00000000.2 Bac0012818 Microbacterium hominis strain TPW29 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium hominis 162426 JWSZ00000000.1 Bac0012819 Chryseobacterium taiwanense strain TPW19 "Chryseobacterium taiwanense strain TPW19 is a Gram-negative, rod-shaped bacterium that is non-spore-forming and exhibits aerobic metabolism. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. ↵↵As a member of the Chryseobacterium genus, this bacterium is characterized by its unique metabolic capabilities, which may offer insights into its ecological roles, particularly in nutrient cycling within its native habitat. The aerobic nature of strain TPW19 suggests that it plays a significant role in the decomposition of organic matter, potentially contributing to the breakdown of complex organic compounds in oxygen-rich environments. ↵↵Understanding the traits of Chryseobacterium taiwanense strain TPW19 can help elucidate its potential applications in bioremediation or biotechnology, where aerobic processes are essential for effective degradation of pollutants. The optimal growth temperature further suggests that this strain may be particularly well-suited for environments that mimic its natural habitat, which could be important for future studies exploring its ecological interactions and functional contributions in microbial communities." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium taiwanense Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 363331 JWTA00000000.1 Bac0012820 Pseudarthrobacter phenanthrenivorans strain SWC37 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter phenanthrenivorans 361575 JWTB00000000.1 Bac0012821 Kocuria rhizophila strain TPW45 "Kocuria rhizophila strain TPW45 is a Gram-positive, aerobic coccus that typically appears in both single and tetrad arrangements. This microbe is part of a broader group known for their diverse habitats, suggesting that Kocuria rhizophila strain TPW45 may thrive in a variety of environments. The presence of aerobic metabolism indicates its reliance on oxygen for growth, which aligns with the physiological characteristics often observed in related microbial species.↵↵The coccoid morphology and tendency to form tetrads may play a role in its adaptation to specific ecological niches, potentially influencing its interactions with other microorganisms and environmental factors. Such structural traits can facilitate both nutrient acquisition and resilience against certain stressors, although the specific mechanisms remain to be explored.↵↵The ecological versatility of Kocuria rhizophila strain TPW45 suggests that it may contribute to various biogeochemical processes, particularly in environments where aerobic conditions prevail. Its ability to exist in multiple habitats highlights the adaptability of this strain, which may serve as an indicator of microbial community dynamics in changing environments. Further investigation into its ecological roles and interactions could provide valuable insights into the functions of microbial communities in diverse ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rhizophila Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Singles - Tetrads 72000 JWTC00000000.1 Bac0012822 Photobacterium halotolerans strain MELD1 "Photobacterium halotolerans strain MELD1 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. This strain is non-spore-forming and demonstrates optimal growth at a temperature of 29.0 °C. ↵↵The Gram-negative nature of P. halotolerans MELD1 implicates a complex cell wall structure, which includes a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. These features may contribute to its adaptability in diverse environmental conditions, particularly in saline habitats, as suggested by the genus name ""Photobacterium,"" which is often associated with marine environments. ↵↵The facultative metabolic capability of this strain indicates that it can switch between aerobic respiration and fermentation or anaerobic respiration depending on the availability of oxygen, thus enhancing its survival in fluctuating ecological niches. This metabolic flexibility is particularly advantageous in environments where oxygen levels can vary, allowing P. halotolerans MELD1 to exploit a wide range of substrates for energy.↵↵The optimal growth temperature of 29.0 °C may suggest an ecological preference for mesophilic conditions, potentially aligning with temperate marine or estuarine ecosystems. Given these attributes, P. halotolerans strain MELD1 may play a role in nutrient cycling and organic matter decomposition in its native habitat, contributing to the overall microbial community dynamics within those environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium halotolerans Gram-negative rod facultative aerobe/anaerobe 29 mesophilic non-spore-forming 265726 JWYV00000000.1 Bac0012823 Streptomyces sp. RSD-27 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. RSD-27 1571774 JWZS00000000.1 Bac0012824 Ralstonia solanacearum strain CFBP3059 "Ralstonia solanacearum strain CFBP3059 is a Gram-negative bacterium that thrives in freshwater environments, as well as in soil and water. This strain is part of a species known for its diverse ecological adaptations, particularly in various aquatic settings. The Gram-negative classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of many bacteria that inhabit environments where they may encounter fluctuating conditions, such as the presence of antibiotics or other environmental stressors.↵↵The habitat of R. solanacearum strain CFBP3059 suggests its potential role in biogeochemical cycles, particularly in nutrient cycling within freshwater ecosystems. The bacterium's ability to survive in both soil and water environments may facilitate its interaction with plants and other microorganisms, highlighting its ecological versatility. This adaptability may allow R. solanacearum strain CFBP3059 to contribute to microbial communities in freshwater systems, potentially influencing microbial diversity and the dynamics of nutrient availability.↵↵Understanding the environmental conditions and interactions of R. solanacearum strain CFBP3059 could provide insights into its ecological roles, particularly in freshwater ecosystems where it may influence soil health and water quality. Thus, further investigation into its ecological functions and adaptations can deepen our comprehension of microbial dynamics in freshwater habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 JXBA00000000.1 Bac0012825 Bacillus subtilis strain HM-66 "Bacillus subtilis strain HM-66 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to endure unfavorable environmental conditions. This strain thrives optimally at 25.0°C and is classified as facultatively anaerobic, meaning it can grow in both the presence and absence of oxygen. ↵↵B. subtilis is known for its versatility and resilience, attributes that are particularly advantageous in its host-associated habitat. The ability to sporulate not only aids in survival but also suggests a potential role in nutrient cycling and microbial interactions within its environment. The facultative nature of its oxygen requirement indicates that B. subtilis strain HM-66 may adapt its metabolic processes in response to varying oxygen levels, which can be crucial for its survival in diverse ecological niches.↵↵Overall, the unique combination of its morphological characteristics and metabolic flexibility positions Bacillus subtilis strain HM-66 as a significant player in microbial communities, particularly in host-associated environments where it may contribute to mutualistic relationships with other microorganisms or its host." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 JXBC00000000.1 Bac0012826 Geobacter soli strain GSS01 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter anodireducens 1340425 JXBL00000000.1 Bac0012827 Alicyclobacillus tengchongensis strain CGMCC1504 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus tolerans 90970 JXBW00000000.1 Bac0012828 Pseudomonas fluorescens strain 2-79 "Pseudomonas fluorescens strain 2-79 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, relying on organic compounds as an energy source, and it thrives in a variety of habitats. It is classified as an aerobic microbe, indicating its requirement for oxygen to support metabolic processes. The optimal growth temperature for Pseudomonas fluorescens strain 2-79 is approximately 25.0°C, suggesting a preference for moderate environmental conditions.↵↵The versatility of Pseudomonas fluorescens strain 2-79 in utilizing diverse organic substrates may contribute to its ecological success in various environments. This adaptability not only enhances its survival in fluctuating conditions but also positions it as a significant player in nutrient cycling and organic matter degradation. Its presence in multiple habitats underscores the potential for this strain to engage in complex interactions within microbial communities, possibly influencing the dynamics of both soil and aquatic ecosystems. Understanding the specific roles of such strains in their respective environments may provide insights into their contributions to ecological balance and biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 JXCQ00000000.1 Bac0012829 Apilactobacillus kunkeei strain LAko Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 JXCY00000000.1 Bac0012830 Apilactobacillus kunkeei strain LMbo Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 JXDF00000000.1 Bac0012831 Bradyrhizobium sp. AT1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. AT1 574934 JXDL00000000.1 Bac0012832 Staphylococcus aureus strain SA-120 "Staphylococcus aureus strain SA-120 is a Gram-positive coccus that typically arranges itself in clusters or singles. This strain demonstrates facultative anaerobic growth, allowing it to survive in both aerobic and anaerobic environments. Notably, it thrives at an optimal temperature of 3.0°C, indicating a potential adaptation to cooler habitats, which contrasts with most strains of S. aureus that prefer higher temperatures.↵↵As a host-associated microbe, S. aureus strain SA-120 is likely to inhabit the surfaces or tissues of various hosts, potentially playing a role in the microbiome of its specific ecological niche. Understanding the growth characteristics and environmental preferences of this strain could provide insights into its ecological interactions and potential applications in biotechnology or medicine. The ability to thrive at lower temperatures may suggest a unique evolutionary path, potentially influencing its interactions with host organisms and its role within microbial communities in cooler environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 JXIG00000000.1 Bac0012833 Vibrio harveyi strain BSW5 "Vibrio harveyi strain BSW5 is a Gram-negative bacterium primarily found in marine environments, particularly within the aquaculture systems of the Changjiang estuary. This strain is part of a larger group of vibrios that are commonly associated with marine habitats, where they play significant roles in nutrient cycling and the health of aquatic ecosystems. ↵↵Vibrio harveyi is well-documented for its bioluminescent capabilities, which may be relevant in its natural habitat for communication and interaction with other marine organisms, although specific bioluminescent traits for strain BSW5 are not detailed here. The ecological role of this bacterium in aquaculture is particularly noteworthy, as it may contribute to both the maintenance of microbial diversity and the overall health of cultured species through its interactions within the microbial community. ↵↵Given its habitat in estuarine environments, Vibrio harveyi strain BSW5 could be influenced by the unique physical and chemical properties of such transitional zones, including variations in salinity and nutrient availability. Understanding this strain's specific ecological interactions could provide insights into its potential utility in aquaculture practices, particularly in promoting beneficial microbial associations while managing the ecological balance within cultured systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi negative aquaculture; Changjiang estuary; Marine 669 JXIL00000000.1 Bac0012834 Stenotrophomonas maltophilia strain ZBG7B "Stenotrophomonas maltophilia strain ZBG7B is a Gram-negative, rod-shaped bacterium that thrives in diverse habitats and exhibits aerobic growth. This strain is part of the Stenotrophomonas genus, which is known for its versatility in adapting to various environmental conditions. The capability of S. maltophilia to inhabit multiple habitats suggests its ecological resilience and potential role in nutrient cycling within those environments.↵↵As an aerobic organism, strain ZBG7B requires oxygen for its metabolic processes, which may influence its ecological niches and interactions with other microorganisms. The presence of S. maltophilia in varied habitats indicates its ability to exploit different resources, contributing to its survival and proliferation in competitive ecosystems.↵↵Understanding the physiological traits of Stenotrophomonas maltophilia strain ZBG7B enhances our knowledge of its ecological roles, particularly in environments where oxygen availability fluctuates. Its adaptability and metabolic capabilities may allow it to occupy unique ecological niches that are not readily accessible to other microbes, potentially influencing microbial community dynamics and ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 JXIP00000000.1 Bac0012835 Aeromonas sp. L_1B5_3 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. L_1B5_3 1588629 JXIR00000000.1 Bac0012836 Bacillus sp. L_1B0_8 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. L_1B0_8 1588630 JXIT00000000.1 Bac0012837 Lactobacillus helsingborgensis strain Bma5 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helsingborgensis 1218494 JXJR00000000.1 Bac0012838 Bifidobacterium polysaccharolyticum strain Hma3N Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium polysaccharolyticum 2750967 JXJS00000000.1 Bac0012839 Lactococcus piscium strain DSM 6634 "Lactococcus piscium strain DSM 6634 is a Gram-positive, nonsporulating bacterium characterized by its coccoid shape and chain-like cell arrangement. This species is notably found in specific habitats, including steak tartare and vacuum-packaged meats, where it may play a role in the fermentation process or contribute to the preservation of these food products. ↵↵Lactococcus piscium is part of a larger genus that is well-known for its importance in dairy fermentation, yet this strain's association with meat-based environments highlights its potential versatility beyond traditional dairy applications. The presence of L. piscium in vacuum-packaged meats suggests an ability to thrive in anaerobic conditions, which can influence the microbial dynamics and overall safety of these foods.↵↵Understanding the ecological role of Lactococcus piscium strain DSM 6634 in meat products could provide insights into its potential utility in food technology, particularly concerning the development of bioprotective cultures that enhance food safety and quality. Its ability to inhabit specific niche environments like steak tartare raises intriguing questions regarding its metabolic capabilities and interactions with other microorganisms within these substrates." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus piscium Positive Cocci No 1 steak tartare; vacuum-packaged meats Chains Nonsporulating 1364 JXJW00000000.1 Bac0012840 Enterococcus canis strain DSM 17029 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus canis 214095 JXKH00000000.1 Bac0012841 Enterococcus raffinosus strain DSM 5633 "Enterococcus raffinosus strain DSM 5633 is a Gram-positive bacterium that predominantly inhabits the intestines of various hosts. This strain is characterized as a microaerophile, indicating that it requires reduced oxygen levels for optimal growth, which is typical for many enterococci found within the gastrointestinal tract. The microaerophilic nature of E. raffinosus suggests its adaptation to the low-oxygen environments often present in intestinal niches, where it may play a role in the complex microbial community interacting with host physiology.↵↵Enterococcus species, including E. raffinosus, are known for their resilience and ability to survive in diverse conditions, suggesting that this strain may contribute to gut health through fermentative processes or by competing with pathogenic organisms. The presence of E. raffinosus in the intestinal microbiome underscores its potential role in maintaining microbial balance, nutrient absorption, and possibly influencing host immune responses. Further investigation into the specific metabolic pathways and interactions of E. raffinosus in its habitat could provide deeper insights into its ecological significance and potential applications in probiotics or gut health management." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus raffinosus positive microaerophile intestines 71452 JXLA00000000.1 Bac0012842 Enterococcus ratti strain DSM 15687 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus ratti microaerophile 150033 JXLB00000000.1 Bac0012843 Enterococcus thailandicus strain DSM 21767 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus thailandicus 417368 JXLE00000000.1 Bac0012844 Lactobacillus apis strain Hma11 "Lactobacillus apis strain Hma11 is a Gram-positive, rod-shaped bacterium that typically forms chains. This nonsporulating strain is a chemoheterotroph, deriving its energy from organic compounds. It thrives optimally at a temperature of 37.0°C, suggesting an adaptation to environments that are conducive to growth at this temperature range.↵↵Lactobacillus species are widely recognized for their role in various ecological niches, including fermentation processes and the maintenance of microbial balance in diverse habitats. The presence of L. apis strain Hma11 in multiple habitats may indicate its potential versatility and adaptability, possibly contributing to the stability of microbial communities in which it is found.↵↵This strain's characteristics align with those of other Lactobacillus species, often associated with beneficial roles in fermentation and food production. Further investigation into its specific ecological functions could reveal insights into its interactions within host organisms or its potential utility in biotechnological applications. The adaptability of L. apis strain Hma11 to various environments underscores the importance of such microbes in nutrient cycling and ecosystem health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus apis Positive Rod No 1 37 Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 303541 JXLG00000000.1 Bac0012845 Lactobacillus melliventris strain Hma8 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus melliventris 1218507 JXLI00000000.1 Bac0012846 Bacillus badius strain MTCC 1458 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pseudobacillus Pseudobacillus badius 1455 JXLP00000000.1 Bac0012847 Caldibacillus thermoamylovorans strain B4064 "Caldibacillus thermoamylovorans strain B4064 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This strain exhibits the ability to thrive in both aerobic and anaerobic environments, suggesting a versatile metabolic capacity that may allow it to adapt to varying ecological niches. Its Gram-positive nature indicates the presence of a thick peptidoglycan layer in the cell wall, which can provide structural support and protection, particularly in challenging environments.↵↵The rod shape of Caldibacillus thermoamylovorans strain B4064 may play a role in its motility and ability to colonize different substrates. As a facultative anaerobe, this organism is capable of utilizing diverse metabolic pathways, potentially allowing it to ferment organic compounds in the absence of oxygen while also being able to respire when oxygen is present. This adaptability may contribute to its survival in fluctuating environmental conditions, such as those found in thermophilic ecosystems where temperature and oxygen levels can vary significantly.↵↵Understanding the metabolic capabilities of Caldibacillus thermoamylovorans strain B4064 could provide insights into its potential applications in biotechnology, particularly in processes involving the degradation of complex organic materials at elevated temperatures. Furthermore, the strain's physiological traits may highlight its role in nutrient cycling within thermophilic environments, underscoring the ecological significance of thermophilic bacteria in biogeochemical processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus thermoamylovorans Positive Rod Facultative anaerobe 35841 JXLR00000000.1 Bac0012848 Caldibacillus thermoamylovorans strain B4065 "Caldibacillus thermoamylovorans strain B4065 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This organism exhibits the ability to thrive in varying oxygen conditions, allowing it to adapt to diverse environmental niches. The rod shape of Caldibacillus thermoamylovorans is typical of many members within its genus, facilitating its mobility and potentially its efficiency in nutrient uptake.↵↵The facultative anaerobic metabolism of this strain suggests a versatile energy production capability, enabling it to utilize both aerobic respiration and fermentation processes depending on the availability of oxygen. This trait is particularly advantageous in fluctuating environments where oxygen levels may vary, allowing the microbe to maintain growth and metabolic activity despite challenging conditions.↵↵Furthermore, the presence of this bacterium in high-temperature environments aligns with its classification, as implied by the species name ""thermoamylovorans,"" which indicates an affinity for thermophilic conditions. The ability to thrive in such environments may play a role in the degradation of complex organic materials, contributing to nutrient cycling and energy flow in thermophilic ecosystems.↵↵Overall, Caldibacillus thermoamylovorans strain B4065 exemplifies microbial adaptability, with its facultative anaerobic nature and thermophilic characteristics suggesting potential applications in biotechnological processes that require efficient biomass degradation and energy production under varying conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus thermoamylovorans Positive Rod Facultative anaerobe 35841 JXLS00000000.1 Bac0012849 Caldibacillus thermoamylovorans strain B4166 "Caldibacillus thermoamylovorans strain B4166 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe. This strain exhibits the ability to thrive in both aerobic and anaerobic environments, which may confer a competitive advantage in diverse ecological niches. The facultative anaerobic nature of this organism suggests it can adapt its metabolic processes depending on the availability of oxygen, potentially utilizing fermentation pathways in anaerobic conditions while engaging in respiration when oxygen is present. ↵↵The morphology of Caldibacillus thermoamylovorans strain B4166, being rod-shaped, is indicative of its belonging to a group of microorganisms that often play significant roles in nutrient cycling and organic matter decomposition. The ability of this strain to tolerate varying oxygen levels allows it to inhabit a range of environments, possibly including those that are thermophilic, given its association with heat-loving characteristics suggested by its genus name. ↵↵Further studies on the metabolic capabilities and ecological roles of Caldibacillus thermoamylovorans strain B4166 could illuminate its potential applications in biotechnological processes, particularly those involving organic waste treatment or bioenergy production, where temperature and oxygen levels vary. Understanding the adaptive mechanisms of this bacterium in fluctuating environments could provide insight into microbial community dynamics and resilience in extreme conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus thermoamylovorans Positive Rod Facultative anaerobe 35841 JXLT00000000.1 Bac0012850 Pseudomonas fluorescens strain UM270 "Pseudomonas fluorescens strain UM270 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 25.0°C and is classified as a heterotroph, indicating its reliance on organic compounds for energy. As an aerobic organism, P. fluorescens UM270 requires oxygen for its metabolic processes, which aligns with its adaptability to various habitats.↵↵The versatility of Pseudomonas fluorescens strains, including UM270, is well-documented, with their presence in diverse environments ranging from soil to water systems. This adaptability underscores the strain's potential role in biogeochemical cycles and its capability to inhabit multiple ecological niches. ↵↵Notably, the ability of Pseudomonas fluorescens to utilize a wide array of organic substrates can contribute to its ecological functions, such as nutrient cycling and organic matter decomposition. This trait may also enhance its significance in bioremediation efforts, where the strain could be employed to break down pollutants in contaminated environments. Thus, the ecological implications of Pseudomonas fluorescens strain UM270 are underscored by its metabolic flexibility and presence in varied habitats, highlighting its potential contributions to ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 JXNZ00000000.1 Bac0012851 Pseudomonas putida strain UASWS0946 "Pseudomonas putida strain UASWS0946 is a Gram-negative, rod-shaped bacterium that exists as single cells and is characterized as a nonsporulating heterotroph. This strain, like other members of the Pseudomonas genus, demonstrates a facultative anaerobic metabolism, allowing it to thrive in various environments, including both aerobic and anaerobic conditions. ↵↵Isolated from soil and wastewater habitats, Pseudomonas putida strain UASWS0946 is likely adapted to environments with fluctuating nutrient availability, which is typical of contaminated sites. Its heterotrophic lifestyle indicates that it utilizes organic compounds as its primary energy source, which may confer an advantage in degrading complex organic pollutants often found in wastewater settings.↵↵The ability of this strain to survive in diverse conditions and to metabolize various organic compounds positions it as a potential candidate for bioremediation applications. Notably, its presence in soil and wastewater suggests a role in nutrient cycling and organic matter decomposition, highlighting its ecological importance in maintaining soil health and water quality. Thus, further investigation into the metabolic pathways of Pseudomonas putida strain UASWS0946 could elucidate its potential contributions to bioremediation processes and environmental sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 JXOG00000000.1 Bac0012852 Methanoculleus sediminis strain S3Fa Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sediminis 1550566 JXOJ00000000.1 Bac0012853 Nitrosospira sp. NpAV Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. NpAV 58133 JXQM00000000.1 Bac0012854 Variovorax paradoxus strain MEDvA23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus 34073 JXQQ00000000.1 Bac0012855 Flavobacterium sp. MEB061 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. MEB061 1587524 JXQR00000000.1 Bac0012856 Pseudomonas fulva strain MEJ086 "Pseudomonas fulva strain MEJ086 is a Gram-negative, rod-shaped bacterium that typically exists in a single-cell arrangement. This strain is notably associated with host environments, suggesting its potential role in specific biological interactions. The Gram-negative characteristic indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in host-associated habitats, such as resistance to certain antibiotics and the ability to evade host immune responses.↵↵The rod shape of P. fulva strain MEJ086 is characteristic of many members of the Pseudomonas genus, which are known for their metabolic versatility and adaptability to diverse ecological niches. The solitary growth pattern may imply a lifestyle that is more reliant on interactions with host organisms rather than forming complex communities, which is often observed in other bacterial species.↵↵Given its association with hosts, Pseudomonas fulva strain MEJ086 could play a significant role in the microbiota of its host, potentially contributing to nutrient cycling or influencing host health. Further exploration of its specific interactions could provide insights into its ecological significance and the dynamics of host-microbe relationships within its associated environment. Understanding such relationships may also reveal potential applications in biotechnology or bioremediation, where host-associated microbes can be utilized for beneficial outcomes in agricultural or environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fulva Negative Rod Yes HostAssociated Singles 47880 JXQW00000000.1 Bac0012857 Microbacterium sp. MEJ108Y Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. MEJ108Y 1587523 JXQX00000000.1 Bac0012858 Pedobacter lusitanus strain NL19 "Pedobacter lusitanus strain NL19 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolic characteristics. This strain, belonging to the genus Pedobacter, is notable for its ability to adapt to aerobic environments, suggesting a reliance on oxygen for its growth and metabolic processes.↵↵In terms of morphological characteristics, the rod shape of Pedobacter lusitanus strain NL19 is typical of many members within the genus, which often display similar filamentous or rod-like forms. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer, surrounded by an outer membrane containing lipopolysaccharides, contributing to its structural integrity and influencing its interactions with the surrounding environment.↵↵While specific ecological roles or pathogenicity were not provided, the aerobic nature of this strain implies potential involvement in nutrient cycling processes within environments where oxygen is readily available. Such habitats may include soil or aquatic systems, where the degradation of organic materials is essential for ecosystem function. ↵↵Overall, Pedobacter lusitanus strain NL19 exemplifies the diversity of microbial life that plays a crucial role in maintaining ecological balance, particularly in aerobic conditions, highlighting the importance of further studies to elucidate its specific functions and contributions to biogeochemical cycles." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter lusitanus Gram-negative rod non-motile aerobic 25 mesophilic 1503925 JXRA00000000.1 Bac0012859 Jeotgalibacillus campisalis strain SF-57 "Jeotgalibacillus campisalis strain SF-57 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and thrive in aerobic conditions. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for moderate environmental temperatures, which may reflect its adaptation to specific ecological niches.↵↵As a spore-forming organism, J. campisalis strain SF-57 possesses a survival strategy that allows it to endure adverse conditions, potentially contributing to its resilience in varying environments. The Gram-positive nature of this bacterium indicates a robust cell wall structure, which may play a role in its survival and functionality in competitive microbial communities.↵↵The aerobic requirement of J. campisalis strain SF-57 implies that it participates in metabolic processes involving oxygen, which may influence its ecological interactions, such as its role in nutrient cycling or in symbiotic relationships with other microorganisms. Given its moderate temperature preference and aerobic metabolism, this strain may be well-suited for niches such as soil or aquatic environments where such conditions prevail.↵↵Overall, the traits of Jeotgalibacillus campisalis strain SF-57 suggest that it could be an important player in specific biogeochemical cycles, particularly in environments where aerobic conditions and moderate temperatures are maintained. Further studies could elucidate its specific ecological roles and interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Jeotgalibacillus Jeotgalibacillus campisalis Gram-positive rod aerobic 29 mesophilic spore-forming 220754 JXRR00000000.1 Bac0012860 Lysobacter sp. A03 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. A03 1199154 JXSS00000000.1 Bac0012861 Stutzerimonas stutzeri strain BAL361 c573l3862c312.479279 "Stutzerimonas stutzeri strain BAL361 c573l3862c312.479279 is a Gram-negative, aerobic, rod-shaped bacterium that exists as single cells. As a heterotroph, this microbe derives its energy from organic compounds, suggesting a dependence on its environment for nutrient acquisition. It is primarily found in host-associated habitats, which may indicate a specialized role in symbiotic or commensal relationships with its host organisms. ↵↵The rod shape and single-cell arrangement of S. stutzeri BAL361 c573l3862c312.479279 are characteristic of the genus, which is often noted for its adaptability to various ecological niches. The aerobic nature of this strain implies that it requires oxygen for metabolic processes, further indicating its potential interactions within oxygen-rich environments associated with hosts.↵↵Understanding the traits of S. stutzeri BAL361 c573l3862c312.479279 can provide insights into its functional role in microbial communities, particularly in association with hosts. The heterotrophic lifestyle suggests that it may play a role in organic matter decomposition or nutrient cycling within its habitat, potentially influencing broader ecological dynamics. Future studies could explore the specific interactions of this strain with host organisms, contributing to our knowledge of microbial ecology and symbiosis." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 JXXD00000000.1 Bac0012862 Rhodopseudomonas palustris strain BAL398 "Rhodopseudomonas palustris strain BAL398 is a Gram-negative bacterium known for its versatile metabolic capabilities, which allow it to thrive in diverse environments. This strain belongs to the genus Rhodopseudomonas, characterized by its ability to perform photosynthesis, assimilate organic compounds, and utilize various electron donors. The negative Gram stain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature typical of this group of bacteria.↵↵Rhodopseudomonas palustris strains are often studied for their potential in biotechnological applications such as bioremediation, bioenergy production, and agricultural enhancement due to their ability to fix nitrogen and degrade organic pollutants. The metabolic flexibility of this strain enables it to adapt to fluctuating environmental conditions, making it a model organism for understanding microbial metabolism and ecology.↵↵The unique ecological insight into strain BAL398 lies in its potential to contribute to sustainable practices. By harnessing its phototrophic and heterotrophic capabilities, this bacterium could play a role in improving soil health and nutrient cycling, thereby enhancing agricultural productivity while minimizing chemical inputs. Further research into its metabolic pathways and interactions with other microorganisms could provide valuable information for developing eco-friendly agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris negative 1076 JXXE00000000.1 Bac0012863 Pseudoalteromonas piscicida strain S2040 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 JXXW00000000.1 Bac0012864 Pseudoalteromonas ruthenica strain S3137 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas ruthenica 151081 JXXZ00000000.1 Bac0012865 Marinomonas sp. S3726 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. S3726 579484 JXYC00000000.1 Bac0012866 Kitasatospora griseola strain MF730-N6 RKJC_8 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora griseola 29 mesophilic spore-forming 2064 JXZB00000000.1 Bac0012867 Marinomonas sp. BSi20584 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. BSi20584 1594462 JYBL00000000.1 Bac0012868 Geobacillus kaustophilus strain Et7/4 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus kaustophilus thermophilic Pasteurized milk 1462 JYBP00000000.1 Bac0012869 Secundilactobacillus collinoides strain 237 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus collinoides 33960 JYDC00000000.1 Bac0012870 Candidatus Synechococcus spongiarum 15L Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Candidatus Synechococcus spongiarum 1608419 JYFQ00000000.1 Bac0012871 Streptococcus gordonii strain G9B "Streptococcus gordonii strain G9B is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. This strain thrives optimally at a temperature of 37.0°C, aligning with its adaptation to host-associated environments, where it is commonly found. As a facultative anaerobe, S. gordonii strain G9B can survive in both aerobic and anaerobic conditions, allowing it to colonize diverse niches within the host microbiome.↵↵The ability of S. gordonii strain G9B to exist within host-associated habitats suggests a potential role in the oral microbiota, where it may contribute to the maintenance of ecological balance among microbial communities. Its physiological traits, including the optimal growth temperature and flexibility in oxygen requirements, underscore its adaptability to varying environmental conditions within a host. This versatility may play a significant role in its interactions with other microorganisms and its potential influence on host health. Understanding the specific behaviors and interactions of S. gordonii strain G9B within its ecological context may provide insights into its functional roles and contributions to the host's microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1302 JYGL00000000.1 Bac0012872 Streptococcus oralis subsp. oralis strain COL85/1862 "Streptococcus oralis subsp. oralis strain COL85/1862 is a Gram-positive coccus that typically arranges itself in pairs or chains. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, suggesting a versatile metabolic capacity that enables it to adapt to various conditions within its host-associated habitat. ↵↵The strain's cocci shape and specific arrangement may play a role in its interactions with other microbial species and the host's immune system, potentially influencing its ecological niche. Given its classification within the Streptococcus genus, COL85/1862 is likely to be part of the normal microbiota in its host, contributing to the complex microbial communities present in the oral cavity or other associated sites. ↵↵This adaptability and potential for colonization highlight the importance of Streptococcus oralis subsp. oralis strain COL85/1862 in maintaining microbial homeostasis, which could have implications for oral health and the overall microbiome dynamics. Understanding the specific traits of this strain may offer insights into its role in host-associated environments and its potential interactions with other microbial organisms." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 JYGM00000000.1 Bac0012873 Streptococcus infantis strain UC921A "Streptococcus infantis strain UC921A is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic growth, thriving in environments with varying oxygen levels. This strain has been isolated from broiler farms, indicating its adaptation to poultry-associated habitats. The presence of S. infantis in such agricultural settings suggests a potential role in the microbial community associated with poultry health and production.↵↵The coccoid morphology and Gram-positive nature of S. infantis UC921A may facilitate its survival in the complex microenvironments found on broiler farms, where it could interact with other microbial species and the host birds. The facultative anaerobic metabolism allows this strain to utilize both aerobic and anaerobic conditions, which could be advantageous in the fluctuating oxygen levels typical of poultry environments, particularly in relation to waste management and gut microflora dynamics.↵↵Understanding the specific interactions of S. infantis UC921A within its habitat may provide insights into its potential contributions to gut health in broilers or the fermentation processes occurring in litter and manure. Further exploration of this strain could illuminate its functional roles in microbial ecology and its implications for poultry management practices." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe broiler farms 68892 JYGT00000000.1 Bac0012874 Streptococcus oralis subsp. tigurinus strain UC5873 "Streptococcus oralis subsp. tigurinus strain UC5873 is a Gram-positive bacterium characterized by its cocci shape and tendency to form pairs and chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is typical of many members within the Streptococcus genus. ↵↵Streptococcus oralis subsp. tigurinus strain UC5873 is host-associated, suggesting that it resides within or on host organisms, potentially contributing to the microbial communities found in the oral cavity and other associated environments. The ability to form chains and pairs may enhance its survival and colonization within host tissues, facilitating intercellular communication and interaction with the host's immune responses.↵↵Considering its habitat and physiological traits, this strain may play a role in the complex microbial ecosystem of the oral cavity, where it could be involved in maintaining homeostasis or participating in biofilm formation. These characteristics highlight the potential ecological significance of S. oralis subsp. tigurinus UC5873 in oral health, as it may influence the dynamics of other microbial species present in its environment. Further studies would be necessary to elucidate its specific interactions within the host and its contributions to the overall oral microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 JYGU00000000.1 Bac0012875 Flavobacterium sp. 316 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. 316 1603293 JYGZ00000000.1 Bac0012876 Clostridium sp. FS41 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. FS41 1609975 JYHN00000000.1 Bac0012877 Stutzerimonas stutzeri strain NT0128 238_2973_269823 "Stutzerimonas stutzeri strain NT0128 238_2973_269823 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a heterotrophic aerobe. This strain, like others in the Stutzerimonas genus, is associated with specific host environments, suggesting a potential symbiotic or commensal relationship with its host organisms. ↵↵As a heterotroph, S. stutzeri strain NT0128 utilizes organic compounds as its primary energy source, which may indicate its role in nutrient cycling within its host-associated habitat. The aerobic nature of this strain implies that it requires oxygen for growth, positioning it within environments that provide adequate aeration, such as the upper layers of soil or within the microbiomes of oxygen-rich tissues in its associated hosts. ↵↵The combination of its negative Gram staining, rod shape, and single-cell arrangement suggests adaptations that may facilitate its survival and efficiency in nutrient uptake within host-associated environments. Further exploration of this strain could yield insights into its specific interactions with host organisms and its potential contributions to the microbial community dynamics in host-associated ecosystems. Understanding these relationships may illuminate the broader ecological roles that Stutzerimonas stutzeri and similar bacteria play in maintaining the health and stability of their respective environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 JYHV00000000.1 Bac0012878 Lentzea aerocolonigenes strain NRRL B-16140 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Lentzea Lentzea aerocolonigenes 29 mesophilic 68170 JYJG00000000.1 Bac0012879 Pseudomonas sp. 10-1B Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 10-1B 1546029 JYKS00000000.1 Bac0012880 Pseudomonas taetrolens strain DSM 21104 26_500_0.77748 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas taetrolens aerobic 47884 JYLA00000000.1 Bac0012881 Pseudomonas libanensis strain DSM 17149 46_593_22.0107 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas libanensis aerobic 75588 JYLH00000000.1 Bac0012882 Bradyrhizobium sp. LTSPM299 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. LTSPM299 1619233 JYMU00000000.1 Bac0012883 Mycolicibacterium chlorophenolicum strain DSM 43826 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium chlorophenolicum 37916 JYNL00000000.1 Bac0012884 Mycolicibacterium obuense strain DSM 44075 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium obuense 1807 JYNU00000000.1 Bac0012885 Pseudomonas sp. 21 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 21 1619948 JYOA00000000.1 Bac0012886 Burkholderiaceae bacterium 26 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderiaceae bacterium 26 1619951 JYOB00000000.1 Bac0012887 Pseudomonas sp. 5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tussilaginis 3067780 JYOC00000000.1 Bac0012888 Burkholderiaceae bacterium 16 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderiaceae bacterium 16 1619952 JYOD00000000.1 Bac0012889 Terrabacter sp. 28 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Terrabacter Terrabacter sp. 28 1619947 JYOE00000000.1 Bac0012890 Listeria seeligeri strain 7KSM Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria seeligeri vegetable storages 1640 JYOM00000000.1 Bac0012891 Chlorobi bacterium OLB4 Pseudomonadati Ignavibacteriota Ignavibacteria Candidatus Tepidiaquacellales Candidatus Tepidiaquacellales bacterium OLB4/UTCHB1 1617411 JYPE00000000.1 Bac0012892 Levilactobacillus spicheri strain LP38 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus spicheri 216463 JZCR00000000.1 Bac0012893 Bacillus amyloliquefaciens strain 12B "Bacillus amyloliquefaciens strain 12B is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to endure adverse environmental conditions. This strain is classified as an aerobic organism, thriving in the presence of oxygen, and is predominantly found in soil habitats. ↵↵As a member of the Bacillus genus, B. amyloliquefaciens strain 12B possesses characteristics typical of soil-dwelling bacteria, including a robust capacity for nutrient cycling and interactions with plant roots. Its ability to form spores is particularly advantageous in soil environments where nutrient availability can fluctuate and moisture levels may be inconsistent. The sporulation process enables the bacterium to survive periods of nutrient scarcity and desiccation, thus ensuring its persistence in the soil ecosystem.↵↵The ecological role of B. amyloliquefaciens strain 12B may extend to promoting plant health, as members of this species are known for their beneficial effects on plant growth and disease suppression. This trait could be attributed to the production of various bioactive compounds, although specific details regarding such interactions for strain 12B remain to be elucidated. The presence of this strain in soil ecosystems highlights the importance of aerobic, sporulating bacteria in maintaining soil health and influencing plant-soil interactions, underscoring their potential utility in sustainable agriculture practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus amyloliquefaciens Positive Rod Yes 1 1 Aerobe Mesophilic Soil Free living Sporulating 1390 JZDI00000000.1 Bac0012894 Escherichia coli strain St. Olav39 "Escherichia coli strain St. Olav39 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain thrives in host-associated environments, making it well-suited for survival and growth in the gastrointestinal tracts of various organisms. As a facultative anaerobe, E. coli St. Olav39 can adapt to both aerobic and anaerobic conditions, enabling it to utilize a range of metabolic pathways depending on the availability of oxygen. Its optimal growth temperature is approximately 37.0°C, which aligns with the normal body temperature of many warm-blooded hosts.↵↵The ability of E. coli strain St. Olav39 to inhabit host-associated environments suggests potential roles in symbiotic relationships, including nutrient acquisition and gut microbiota balance. This characteristic emphasizes the adaptability of E. coli strains to diverse ecological niches within their host organisms. Understanding the traits of E. coli St. Olav39 can provide insights into its interactions in the microbiome, highlighting the importance of this bacterium in maintaining homeostasis within its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 JZDU00000000.1 Bac0012895 Candidatus Brocadia sinica Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Brocadia Candidatus Brocadia sinica 795830 JZEK00000000.1 Bac0012896 Devosia chinhatensis strain IPL18 "Devosia chinhatensis strain IPL18 is a Gram-negative, aerobic, rod-shaped bacterium that is characterized by its non-spore-forming nature. This strain, belonging to the genus Devosia, exhibits typical features of aerobic metabolism, which suggests it thrives in environments where oxygen is readily available. Its rod shape may influence its motility and interaction with its surroundings, contributing to its ecological role.↵↵As a member of the Devosia genus, strain IPL18 may share traits common to this group, including potential involvement in biogeochemical cycles or interactions with plant roots, although specific ecological relationships have not been documented in the available data. The absence of sporulation indicates that this strain may have evolved to rely on other survival strategies in fluctuating environmental conditions.↵↵The aerobic requirement of Devosia chinhatensis strain IPL18 suggests a preference for habitats rich in oxygen, which could align with its presence in soil or water systems where oxygen diffusion is sufficient. Understanding the physiological and ecological roles of such strains can provide insights into their potential applications in biotechnology, particularly in bioremediation processes or agricultural practices that harness beneficial microbial interactions. Further research could elucidate the specific environmental niches this strain occupies and its potential contributions to ecosystem function." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia chinhatensis Gram-negative rod aerobic non-spore-forming 429727 JZEY00000000.1 Bac0012897 Enterobacter chengduensis strain CIDEIMsCOL9 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter chengduensis 2494701 JZKT00000000.1 Bac0012898 Chloroflexi bacterium OLB13 Bacillati Chloroflexota Chloroflexi bacterium OLB13 1617414 JZRA00000000.1 Bac0012899 Aquitalea magnusonii strain SM6 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Aquitalea Aquitalea magnusonii 332411 JZRC00000000.1 Bac0012900 Brevundimonas sp. KM4 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. KM4 1628191 JZRG00000000.1 Bac0012901 Pantoea sp. BL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. BL1 1628190 JZRH00000000.1 Bac0012902 Photobacterium iliopiscarium strain ATCC 51761 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium iliopiscarium 56192 JZSR00000000.1 Bac0012903 Clostridium sp. IBUN125C Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. IBUN125C 1523154 JZWF00000000.1 Bac0012904 Variovorax paradoxus strain TBEA6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus 34073 JZWI00000000.1 Bac0012905 Streptomyces katrae strain NRRL ISP-5550 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces katrae 68223 JZWV00000000.1 Bac0012906 Streptomyces sp. NRRL S-104 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL S-104 1609135 JZWW00000000.1 Bac0012907 Streptomyces sp. NRRL S-444 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL S-444 1609134 JZWX00000000.1 Bac0012908 Enterobacter hormaechei subsp. xiangfangensis strain 42333 "Enterobacter hormaechei subsp. xiangfangensis strain 42333 is a Gram-negative bacterium that exhibits facultative anaerobic metabolism, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is host-associated, suggesting a potential symbiotic or commensal relationship with its host organisms. The Gram-negative classification of this strain implies the presence of an outer membrane containing lipopolysaccharides, which can influence its interaction with host immune systems and contribute to its ecological niche.↵↵In terms of its metabolic capabilities, the facultative anaerobic nature allows Enterobacter hormaechei subsp. xiangfangensis strain 42333 to adapt to varying oxygen levels, making it versatile in diverse habitats associated with living organisms. This adaptability may facilitate its survival in fluctuating environments within the host, where oxygen availability can change due to metabolic processes or tissue-specific conditions.↵↵Understanding the specific interactions of this strain within its host environment could provide insights into its role in microbial communities, particularly in terms of nutrient cycling and potential impacts on host health. Further research into the ecological functions and interactions of Enterobacter hormaechei subsp. xiangfangensis strain 42333 may reveal its contributions to the microbiome dynamics in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 JZYF00000000.1 Bac0012909 Enterobacter cloacae subsp. cloacae strain 42324 "Enterobacter cloacae subsp. cloacae strain 42324 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is part of a broader group of Enterobacter species known for their versatile metabolic capabilities and adaptability to various habitats, which may include soil, water, and human-associated environments. The facultative anaerobic nature of strain 42324 suggests it can switch between fermentation and respiration depending on the availability of oxygen, a trait that enhances its survival in fluctuating conditions.↵↵The ability of Enterobacter cloacae to occupy multiple habitats indicates its potential role in diverse ecological niches, possibly contributing to nutrient cycling and microbial community dynamics. This adaptability may also suggest a competitive advantage in environments where resources are limited, enabling it to persist alongside other microbial populations. Understanding the ecological roles of strains like Enterobacter cloacae subsp. cloacae 42324 can provide insights into microbial interactions and the functioning of ecosystems where these bacteria are present. Further research could elucidate the specific contributions of this strain to its habitats, particularly in relation to its metabolic versatility and ecological interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 JZYG00000000.1 Bac0012910 Enterobacter roggenkampii strain 42192 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter roggenkampii 1812935 JZYJ00000000.1 Bac0012911 Enterobacter sichuanensis strain 35699 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sichuanensis 2071710 JZYX00000000.1 Bac0012912 Bacillus cereus strain SDA KA 96 126 "Bacillus cereus strain SDA KA 96 126 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. The versatility of B. cereus strains, including SDA KA 96 126, is highlighted by their presence in multiple habitats, suggesting a broad ecological niche and adaptability to diverse environments.↵↵The rod-shaped morphology and chain formation may play a role in its survival and nutrient acquisition strategies, potentially enhancing its ability to colonize various substrates. The strain's aerobic nature implies a reliance on oxygen for metabolic processes, which may influence its distribution in environments with varying oxygen levels. ↵↵Given its capacity to inhabit multiple ecological niches, B. cereus strain SDA KA 96 126 may contribute to the microbial diversity of its ecosystems, possibly participating in nutrient cycling or biogeochemical processes. This adaptability underscores the ecological significance of this strain within microbial communities, where it may interact with other microorganisms, influencing community dynamics and ecosystem functions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LABR00000000.1 Bac0012913 Pseudomonas fluorescens strain C8 "Pseudomonas fluorescens strain C8 is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells and is classified as an aerobic heterotroph. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵As a member of the Pseudomonas genus, strain C8 is known to inhabit diverse ecological niches, which reflects its versatile metabolic capabilities and adaptability to various habitats. Its heterotrophic nature allows it to utilize organic compounds as energy sources, further enhancing its survival in environments rich in organic matter. ↵↵The aerobic requirement of Pseudomonas fluorescens strain C8 emphasizes its dependence on oxygen for respiration, a trait that positions it favorably in well-aerated environments, such as soil or water systems. This bacterium's ability to thrive in multiple habitats may contribute to its potential role in biogeochemical cycles, particularly in the degradation of organic pollutants, suggesting its utility in bioremediation applications. The ecological significance of strain C8 lies in its adaptability and metabolic versatility, which may facilitate its involvement in microbial communities and nutrient cycling in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LACC00000000.1 Bac0012914 Pseudomonas fluorescens strain C3 "Pseudomonas fluorescens strain C3 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain demonstrates heterotrophic metabolism, utilizing organic compounds as its energy source, and thrives optimally at a temperature of 25.0°C. As an aerobic organism, P. fluorescens strain C3 requires oxygen for growth, which aligns with its habitat diversity, allowing it to inhabit various environments.↵↵The adaptability of Pseudomonas fluorescens strain C3 to multiple habitats suggests its potential role in biogeochemical cycles and its capacity to interact with a variety of organic substrates. This versatility may contribute to its significance in ecological contexts, such as soil health and plant growth promotion. Its oxygen-dependent metabolic pathways may also implicate it in processes like nitrogen cycling or the degradation of environmental pollutants, underscoring its importance in both natural ecosystems and bioremediation strategies. Therefore, P. fluorescens strain C3 exemplifies the ecological resilience and functional diversity characteristic of the Pseudomonas genus, highlighting its potential applications in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LACD00000000.1 Bac0012915 Desulfatitalea sp. BRH_c12 BRHa_1003128 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfatitalea Desulfatitalea sp. BRH_c12 anaerobic 1629708 LADR00000000.1 Bac0012916 Desulfobulbaceae bacterium BRH_c16a BRHa_1005805 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbaceae bacterium BRH_c16a 1629713 LADS00000000.1 Bac0012917 Clostridiaceae bacterium BRH_c20a BRHa_1004319 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium BRH_c20a 1629719 LADT00000000.1 Bac0012918 Peptococcaceae bacterium BRH_c23 BRHa_1006413 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Peptococcaceae bacterium BRH_c23 1629714 LADV00000000.1 Bac0012919 Hyphomonadaceae bacterium BRH_c29 BRHa_1005153 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonadaceae bacterium BRH_c29 1629720 LADW00000000.1 Bac0012920 Flavobacteriales bacterium BRH_c54 BRHa_1002780 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriales bacterium BRH_c54 1629721 LADZ00000000.1 Bac0012921 Neisseria flavescens strain CD-NF3 seq0022 "Neisseria flavescens strain CD-NF3 seq0022 is a Gram-negative bacterium identified within the duodenal habitat, suggesting its potential role in the gastrointestinal microbiota. As an aerobic organism, this strain requires oxygen for growth and metabolism, positioning it within environments where oxygen is readily available, such as the upper gastrointestinal tract.↵↵The presence of N. flavescens in the duodenum indicates its adaptation to the specific conditions of this region, which is characterized by a relatively high oxygen tension compared to other sections of the gastrointestinal tract. This strain may play a role in the complex microbial ecosystem of the duodenum, contributing to the digestion and absorption processes that occur in this part of the intestine.↵↵Given its Gram-negative status, N. flavescens strain CD-NF3 seq0022 possesses an outer membrane that may confer certain protective properties, influencing its interactions with other microbial species and the host environment. While the precise ecological functions of this strain remain to be elucidated, its adaptation to an aerobic niche within the duodenum may suggest involvement in processes such as nutrient metabolism or modulation of host immune responses. Further research is warranted to clarify its ecological significance and potential interactions within the duodenal microbiome." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria flavescens Negative Aerobe duodenum 484 LAEJ00000000.1 Bac0012922 Neisseria flavescens strain CNF seq0063 "Neisseria flavescens strain CNF seq0063 is a Gram-negative bacterium identified within the duodenum, indicating its adaptation to a specific niche in the gastrointestinal tract. This strain is classified as an aerobic organism, requiring oxygen for its metabolic processes, which suggests a potential role in the microbial community dynamics of the upper intestine where oxygen levels may vary. ↵↵The presence of N. flavescens in the duodenum may imply its involvement in the complex interactions between gut microbiota and host physiology, particularly in nutrient absorption and immune modulation. While the specific interactions and functional contributions of this strain remain to be fully elucidated, its aerobic nature highlights the potential for competition with other microbial species that may thrive in oxygen-rich environments. ↵↵Overall, N. flavescens strain CNF seq0063 exemplifies the diverse microbial inhabitants of the human gastrointestinal tract, contributing to the overall function and balance of gut microbiota. This underscores the importance of studying such strains to better understand their roles in health and disease, particularly in the context of microbial ecology within the duodenum." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria flavescens Negative Aerobe duodenum 484 LAEK00000000.1 Bac0012923 Nostoc linckia z16 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc linckia 1628751 LAHI00000000.1 Bac0012924 Arsukibacterium sp. MJ3 EFN4V4XJ Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Arsukibacterium Arsukibacterium sp. MJ3 1632859 LAHP00000000.1 Bac0012925 Aeromonas salmonicida subsp. salmonicida strain M16474-11 "Aeromonas salmonicida subsp. salmonicida strain M16474-11 is a Gram-negative, rod-shaped bacterium that functions as a heterotroph and thrives in aquatic environments. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which provides it with a versatile metabolic capacity that allows it to adapt to varying oxygen levels in its habitat. ↵↵The aquatic nature of this microbe suggests that it may play a significant role in the microbial dynamics of freshwater ecosystems, potentially influencing nutrient cycling and the health of aquatic organisms. Its heterotrophic lifestyle indicates that it relies on organic compounds for energy, which may contribute to its role in the decomposition of organic matter within these environments. ↵↵Understanding the ecological roles of Aeromonas salmonicida subsp. salmonicida strain M16474-11 could provide valuable insights into its interactions with other microbial communities and its potential impact on aquatic health, particularly in relation to organic material breakdown and nutrient availability." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 645 LAIT00000000.1 Bac0012926 Devosia insulae DS-56 "Devosia insulae DS-56 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0 °C. This species belongs to the genus Devosia, which is characterized by its unique morphological and physiological traits. The Gram-negative nature of D. insulae DS-56 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical for members of this group and may influence its interactions within various environments.↵↵The rod shape of D. insulae DS-56 is indicative of its potential motility and ability to adapt to different ecological niches. Given that this bacterium exhibits optimal growth at 25.0 °C, it may be well-suited to moderate thermal environments, potentially influencing its distribution in various habitats such as soil or aquatic systems.↵↵The characteristics of D. insulae DS-56 may suggest its role in biogeochemical cycles, particularly in environments where temperature fluctuations are minimal. Further investigation into its metabolic pathways and ecological interactions could provide insights into its functional contributions to microbial communities in temperate ecosystems. Understanding the ecological role of D. insulae DS-56 may shed light on how such microorganisms contribute to nutrient cycling and ecosystem dynamics in their native habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia insulae Gram-negative rod 25 mesophilic 1116389 LAJE00000000.2 Bac0012927 Staphylococcus pasteuri strain BAB3 "Staphylococcus pasteuri strain BAB3 is a coccoid-shaped bacterium belonging to the Staphylococcus genus. This strain is characterized by its spherical morphology, which is typical for many members of the Staphylococcus genus. While specific details regarding its metabolic pathways, growth conditions, and ecological roles are not provided, the genus Staphylococcus is generally known for its versatility in various environments, indicating that strain BAB3 may exhibit similar adaptability. ↵↵As a cocci, S. pasteuri strain BAB3 may be found in clusters, which is a hallmark of staphylococcal bacteria, possibly enabling it to thrive in diverse habitats, including those associated with human activity and various animal hosts. The ecological niche it occupies could encompass environments rich in organic material, where it might play a role in nutrient cycling or interact with other microbial communities.↵↵Further studies would be required to elucidate the specific physiological characteristics and ecological interactions of S. pasteuri strain BAB3, but its morphology suggests potential for a variety of lifestyle strategies, from symbiotic relationships to opportunistic interactions with other microorganisms. This highlights the importance of continued research into this strain to better understand its role within the broader microbial ecosystem." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pasteuri Cocci 45972 LAKF00000000.1 Bac0012928 Rickettsia hoogstraalii str. RCCE3 "Rickettsia hoogstraalii str. RCCE3 is a Gram-negative, ovoid-shaped bacterium classified within the Rickettsiaceae family. This microbe exhibits characteristics typical of the Rickettsia genus, notably its obligate intracellular lifestyle, which necessitates a host cell for growth and reproduction. The Gram-negative nature of Rickettsia hoogstraalii str. RCCE3 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its unique physiological properties and interactions with host organisms. ↵↵As an ovoid-shaped bacterium, Rickettsia hoogstraalii str. RCCE3's morphology could influence its movement and penetration into host cells, an essential aspect for a pathogen that relies on intracellular survival. While specific ecological roles and pathogenicity have not been detailed, the structural traits of Rickettsia hoogstraalii str. RCCE3 hint at potential interactions within its environment, possibly involving symbiotic or parasitic relationships with various hosts. ↵↵Further research into the ecological dynamics of Rickettsia hoogstraalii str. RCCE3 may reveal its interactions within microbial communities or its evolutionary adaptations to host environments, providing insights into the broader implications of Rickettsia species in microbial ecology and host-pathogen interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia hoogstraalii Gram-negative ovoid 1359197 LAOB00000000.1 Bac0012929 Candidatus Brocadia fulgida Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Brocadia Candidatus Brocadia fulgida 380242 LAQJ00000000.1 Bac0012930 Kiloniella spongiae strain MEBiC09566 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Kiloniellaceae Kiloniella Kiloniella spongiae 1489064 LAQL00000000.1 Bac0012931 Amantichitinum ursilacus strain IGB-41 "Amantichitinum ursilacus strain IGB-41 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, thriving optimally at a temperature of 25.0°C. This strain's Gram-negative classification indicates a distinct cell wall structure that may confer specific properties in terms of environmental resilience and interaction with other microbial communities. The rod shape is a common morphology among bacteria, potentially influencing its motility and ability to colonize various substrates.↵↵As a facultative organism, A. ursilacus strain IGB-41 is capable of utilizing both aerobic and anaerobic metabolic pathways. This adaptability allows it to survive in diverse environments where oxygen availability may fluctuate, making it versatile in its ecological niche. The optimal growth temperature of 25.0°C suggests that this strain may be well-suited for environments that are temperate or mildly warm, possibly including soils or aquatic habitats.↵↵In summary, the metabolic versatility and specific growth temperature of A. ursilacus strain IGB-41 may enable it to play a significant role in nutrient cycling within its habitat, particularly in environments where oxygen levels vary. Further studies could elucidate its ecological interactions and contributions to microbial communities in its native ecosystem." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Amantichitinum Amantichitinum ursilacus Gram-negative rod facultative aerobe/anaerobe 25 mesophilic 857265 LAQT00000000.1 Bac0012932 Sphingomonas sp. SRS2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. SRS2 133190 LARW00000000.1 Bac0012933 Luteimonas sp. FCS-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas sp. FCS-9 1547516 LASZ00000000.1 Bac0012934 Mycoplasma leachii 06049 "Mycoplasma leachii 06049 is a Gram-positive, nonsporulating bacterium characterized by its single-cell arrangement. This microbe is facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments, which may facilitate its survival within host-associated habitats. Mycoplasma species, including M. leachii, are known for their minimalistic cellular structure, lacking a cell wall, which contributes to their unique physiology and adaptability.↵↵As a host-associated organism, M. leachii 06049 likely interacts closely with its host environment, potentially influencing host microbiota dynamics. The facultative nature of its oxygen requirement suggests that it can exploit various metabolic pathways depending on the availability of oxygen, which may enhance its resilience in fluctuating environments. This adaptability could allow M. leachii to occupy niches within its host that are otherwise challenging for other microorganisms.↵↵Understanding the ecological role of M. leachii 06049 within its host-associated environment may provide insights into its potential contributions to microbial community structure and function. Further investigation into its interactions with the host and other microbial inhabitants could reveal important biological implications, particularly in relation to nutrient cycling and host health." Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma leachii Positive No 1 1 Facultative Mesophilic HostAssociated Free living Singles Nonsporulating 1188244 LAUU00000000.1 Bac0012935 Lactococcus lactis subsp. lactis strain DPC6853 "Lactococcus lactis subsp. lactis strain DPC6853 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic growth, thriving optimally at a temperature of 40.0°C. This strain is part of a widely studied group of lactic acid bacteria, commonly found in diverse habitats, particularly in dairy environments where it plays a crucial role in fermentation processes.↵↵The coccoidal shape and nonsporulating nature of L. lactis subsp. lactis DPC6853 suggest its adaptation to stable environments where sporulation is not necessary for survival. Its facultative anaerobic metabolism allows it to utilize both aerobic and anaerobic pathways for energy production, providing versatility in various niches, including those with fluctuating oxygen levels.↵↵The ability of this strain to thrive at an optimal temperature of 40.0°C indicates a potential for use in specific fermentation processes, where temperature control is critical for maximizing yield and flavor profiles in food products such as cheese and yogurt. Additionally, its presence in multiple habitats highlights the ecological adaptability of L. lactis subsp. lactis, suggesting that it may be involved in the microbial dynamics of different ecosystems, contributing to the maintenance of microbial diversity and fermentation activity in both natural and engineered environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human; Non-pathogenic 1358 LAVD00000000.1 Bac0012936 Carbonactinospora thermoautotrophica strain H1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Carbonactinosporaceae Carbonactinospora Carbonactinospora thermoautotrophica 1469144 LAXD00000000.1 Bac0012937 Christensenella hongkongensis strain HKU16 2806ref_2ab_c35 Bacillati Bacillota Clostridia Christensenellales Christensenellaceae Christensenella Christensenella hongkongensis 270498 LAYJ00000000.1 Bac0012938 Leucobacter sp. Ag1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter sp. Ag1 1642040 LAYO00000000.1 Bac0012939 Corynebacterium minutissimum strain 1941 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium minutissimum 38301 LAYQ00000000.1 Bac0012940 Streptomyces sp. KE1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. KE1 1638939 LAYX00000000.1 Bac0012941 Mesobacillus campisalis strain SA2-6 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Mesobacillus Mesobacillus campisalis 1408103 LAYY00000000.1 Bac0012942 Bacilli bacterium VT-13-104 Bacillati Bacillota Bacilli Bacilli bacterium VT-13-104 1637974 LAZH00000000.1 Bac0012943 Paenibacillus sp. DMB20 mira_66 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. DMB20 1642570 LAZU00000000.1 Bac0012944 Sphingomonas sp. Ag1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Ag1 1642949 LAZX00000000.1 Bac0012945 Bacteroidales bacterium Barb4 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium Barb4 1633200 LBCX00000000.1 Bac0012946 Bacteroidales bacterium Barb6 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium Barb6 1633201 LBCY00000000.1 Bac0012947 Streptomyces malaysiense strain MUSC 136 235 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces malaysiense 1428626 LBDA00000000.2 Bac0012948 Vibrio metoecus strain YB5B04 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio metoecus 1481663 LBGP00000000.1 Bac0012949 Aurantiacibacter luteus strain KA37 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter luteus 1581420 LBHB00000000.1 Bac0012950 Bifidobacterium adolescentis strain 150 "Bifidobacterium adolescentis strain 150 is a Gram-positive, non-sporulating rod-shaped bacterium that primarily exists in a single-cell arrangement. This anaerobic microbe thrives at an optimal temperature of 37.0°C, which aligns with the physiological conditions found in the intestines of its host organisms. As a member of the Bifidobacterium genus, this strain is part of the gut microbiota, which plays a crucial role in maintaining intestinal health and function.↵↵Bifidobacterium adolescentis is known for its involvement in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids (SCFAs) that are beneficial for gut health. The presence of this strain in the gastrointestinal tract suggests an important role in the modulation of the host's immune system and metabolic processes. Given its anaerobic nature, Bifidobacterium adolescentis strain 150 likely competes effectively with other microbial populations within the gut, utilizing available nutrients while contributing to the overall stability and diversity of the intestinal microbiome.↵↵The ecological significance of Bifidobacterium adolescentis strain 150 may extend beyond its immediate role in digestion; it may also be involved in the prevention of pathogenic colonization and the maintenance of a balanced gut microbiota. Further investigations into its specific interactions within the host environment could provide valuable insights into its contributions to host health and disease prevention." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 LBHQ00000000.1 Bac0012951 Aurantiacibacter marinus strain HWDM-33 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter marinus 874156 LBHU00000000.1 Bac0012952 Acinetobacter pittii strain LC510 "Acinetobacter pittii strain LC510 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37°C, indicative of its potential adaptation to body-temperature environments, which may be relevant for its survival in various habitats. As a chemoheterotroph, Acinetobacter pittii strain LC510 utilizes organic compounds as its energy source, allowing it to inhabit diverse ecological niches where organic matter is present.↵↵This organism requires oxygen for growth, classifying it as an aerobe, which suggests a preference for environments with sufficient oxygen levels. Given its metabolic capabilities and adaptability to different habitats, Acinetobacter pittii strain LC510 may play a role in the degradation of organic substances within its ecological niches, contributing to nutrient cycling.↵↵Understanding the traits of Acinetobacter pittii strain LC510 enhances our knowledge of its ecological role and potential applications in biotechnology, particularly in bioremediation and waste management, where its ability to utilize organic materials can be harnessed for environmental restoration efforts." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 LBHY00000000.2 Bac0012953 Bradyrhizobium zhanjiangense strain CCBAU 51787 C1873 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium zhanjiangense 1325107 LBJM00000000.1 Bac0012954 Vibrio sp. VPAP30 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. VPAP30 1647102 LBLS00000000.1 Bac0012955 Nonlabens sp. YIK11 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens sp. YIK11 1453349 LBMJ00000000.1 Bac0012956 Desulfocarbo indianensis strain SCBM Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfocarbo Desulfocarbo indianensis anaerobic 1348163 LBMP00000000.1 Bac0012957 Kerstersia gyiorum strain CG1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Kerstersia Kerstersia gyiorum 206506 LBNE00000000.1 Bac0012958 Acinetobacter tandoii strain SC36 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter tandoii 202954 LBNL00000000.1 Bac0012959 Candidatus Yanofskybacteria bacterium GW2011_GWA1_39_13 Candidatus Yanofskyibacteriota Candidatus Yanofskybacteria bacterium GW2011_GWA1_39_13 1619019 LBWF00000000.1 Bac0012960 Candidatus Peregrinibacteria bacterium GW2011_GWC2_39_14 Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium GW2011_GWC2_39_14 1619062 LBWJ00000000.1 Bac0012961 Flagellimonas eckloniae strain DOKDO 007 "Flagellimonas eckloniae strain DOKDO 007 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at 29.0°C and requires aerobic conditions for growth. This strain is characterized by its motility, facilitated by flagella, which is typical of the genus Flagellimonas. The rod shape and aerobic nature indicate its adaptation to environments where oxygen is readily available, suggesting a potential role in nutrient cycling within its ecological niche.↵↵The specific temperature preference of 29.0°C may reflect a habitat that is consistently warm, likely associated with marine environments, given the genus's known associations with seaweed and other aquatic organisms. This implies that Flagellimonas eckloniae strain DOKDO 007 could be involved in interactions with its surroundings, potentially influencing the microbial community dynamics in coastal ecosystems.↵↵The non-spore-forming trait suggests that this strain may be more sensitive to environmental changes compared to spore-forming bacteria, which can endure harsher conditions. As such, the persistence of Flagellimonas eckloniae in its habitat may depend on stable environmental conditions, which could have implications for its survival and ecological interactions, particularly in the context of climate variability and ocean temperature changes. This highlights the importance of understanding the specific ecological roles of such microorganisms within their habitats." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas eckloniae Gram-negative rod aerobic 29 mesophilic non-spore-forming 346185 LCTZ00000000.1 Bac0012962 Aliarcobacter thereius strain LMG24487 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter thereius 544718 LCUH00000000.1 Bac0012963 Lacticaseibacillus casei strain N87 gLb87_seq27 "Lacticaseibacillus casei strain N87 gLb87_seq27 is a Gram-positive, rod-shaped bacterium that typically forms chains and is characterized as a nonsporulating organism. This strain exhibits facultative anaerobic respiration, indicating its ability to thrive in both aerobic and anaerobic environments, which may contribute to its adaptability in specialized habitats. Optimal growth occurs at a temperature of 30.0°C, suggesting a preference for moderate thermal conditions.↵↵The ability of Lacticaseibacillus casei strain N87 gLb87_seq27 to form chains could reflect a specific adaptive mechanism for survival and colonization in its niche, potentially facilitating interactions with other microorganisms or host tissues. While the specific ecological context of this strain is not detailed, its specialized habitat may imply a role in fermentation processes or as a probiotic within certain environments, such as the gastrointestinal tract of animals or in fermented food products.↵↵Overall, the physiological traits of this strain suggest that it may play a significant role in maintaining microbial balance and promoting health in its specialized habitat, although further research would be necessary to elucidate its precise ecological interactions and contributions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains Nonsporulating 1582 LCUN00000000.1 Bac0012964 Alishewanella sp. WH16-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alishewanella Alishewanella sp. WH16-1 1651088 LCWL00000000.1 Bac0012965 Vulcanisaeta sp. EB80 Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta sp. EB80 1650660 LCWN00000000.2 Bac0012966 Pseudomonas fluorescens strain Ps_22 "Pseudomonas fluorescens strain Ps_22 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic heterotroph. This strain demonstrates optimal growth at a temperature of 25.0°C, which suggests a preference for moderate environmental conditions. ↵↵As a member of the Pseudomonas genus, strain Ps_22 is known for its metabolic versatility, enabling it to utilize various organic compounds as energy sources. This adaptability allows it to thrive in multiple habitats, potentially including soil, water, and plant-associated environments. The strain's aerobic nature indicates that it requires oxygen for its metabolic processes, which aligns with the ecological niches it may occupy.↵↵The ability of Pseudomonas fluorescens strains to degrade a wide range of organic substances has implications for bioremediation efforts, particularly in environments contaminated with organic pollutants. Furthermore, the ecological role of Ps_22 in nutrient cycling and its potential interactions with other microorganisms in its habitat warrant further investigation, as these interactions can influence the overall microbial community dynamics and ecosystem health. Understanding the traits of strain Ps_22 can provide insights into its functional capabilities and contributions to its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LCYA00000000.1 Bac0012967 Microvirga vignae strain BR3299 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga vignae 1225564 LCYG00000000.1 Bac0012968 Bacillus cereus strain B4077 "Bacillus cereus strain B4077 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in a variety of habitats. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. The optimal growth temperature for Bacillus cereus strain B4077 is around 25°C, which suggests that it is well-suited to moderate environmental conditions.↵↵The ability of Bacillus cereus to inhabit diverse environments may contribute to its ecological versatility, allowing it to adapt to different niches and potentially utilize a range of organic substrates for energy. This adaptability highlights the ecological significance of this strain within microbial communities, where it may play a role in nutrient cycling and the decomposition of organic matter. Furthermore, its aerobic nature suggests that it may compete effectively with other microorganisms for resources in oxygen-rich environments, underscoring its potential influence on microbial dynamics in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LCYI00000000.1 Bac0012969 Bacillus wiedmannii strain B4147 "Bacillus wiedmannii strain B4147 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes. ↵↵Bacillus wiedmannii is part of a diverse genus known for its versatility and ability to inhabit a variety of environments. The presence of this strain in multiple habitats suggests a level of ecological adaptability, allowing it to survive in different conditions, potentially contributing to various biogeochemical cycles. ↵↵The characteristics of B. wiedmannii strain B4147, particularly its aerobic nature, imply a role in the decomposition of organic materials in oxygen-rich environments. This trait may enhance its ability to participate in nutrient recycling within its ecosystems, providing insights into its ecological importance and potential applications in bioremediation or agriculture. Further research into its specific interactions within its habitats could elucidate its functional roles in microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 LCYN00000000.1 Bac0012970 Stenotrophomonas terrae strain DSM 18941 "Stenotrophomonas terrae strain DSM 18941 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. As a non-spore-forming organism, it relies on vegetative growth for reproduction and survival. This strain is part of the broader Stenotrophomonas genus, known for its metabolic versatility and ability to thrive in various environments. ↵↵Given its aerobic nature, S. terrae strain DSM 18941 may play a significant role in biogeochemical cycling, particularly in environments rich in organic matter where oxygen is available. The ability of this strain to grow optimally at moderate temperatures suggests it may be well-suited for ecological niches such as soil or decaying plant material, where it can contribute to the decomposition processes and nutrient recycling. Understanding the ecological role of S. terrae and its interactions with other microorganisms could provide valuable insights into its potential applications in bioremediation or as a model organism for studying microbial ecology in aerobic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas terrae Gram-negative rod aerobic 25 mesophilic non-spore-forming 405446 LDJJ00000000.1 Bac0012971 Pseudoxanthomonas dokdonensis strain DSM 21858 "Pseudoxanthomonas dokdonensis strain DSM 21858 is a Gram-negative, rod-shaped bacterium that demonstrates aerobic growth and is non-spore-forming. This organism exhibits optimal growth at a temperature of 29.0 °C, suggesting a preference for moderate temperature environments. As a member of the genus Pseudoxanthomonas, it is likely to play a role in various ecological contexts, although specific ecological interactions remain to be elucidated.↵↵The aerobic nature of Pseudoxanthomonas dokdonensis indicates its reliance on oxygen for metabolic processes, which aligns it with other environmental bacteria that contribute to nutrient cycling and organic matter decomposition. The absence of sporulation in this strain may reflect its adaptation to stable environments where the conditions for survival do not necessitate the formation of spores, which are typically a strategy for resilience in adverse conditions. ↵↵Understanding the traits of Pseudoxanthomonas dokdonensis can provide insights into its potential applications in bioremediation or other biotechnological processes, particularly in oxygen-rich environments where its metabolic capabilities could be harnessed. Additionally, its optimal growth temperature suggests that it may thrive in environments that are characteristic of temperate climates, potentially influencing microbial community dynamics in such habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas dokdonensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 344882 LDJL00000000.1 Bac0012972 Stenotrophomonas acidaminiphila strain JCM 13310 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas acidaminiphila 128780 LDJO00000000.1 Bac0012973 Stenotrophomonas daejeonensis strain JCM 16244 "Stenotrophomonas daejeonensis strain JCM 16244 is a Gram-negative, non-spore-forming bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This strain is part of the Stenotrophomonas genus, which is known for its metabolic versatility and ability to inhabit diverse ecological niches. The Gram-negative nature of S. daejeonensis indicates a complex cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may contribute to its resilience in various environmental conditions.↵↵The preference for aerobic conditions suggests that S. daejeonensis relies on oxygen for its metabolic processes, which may allow it to exploit a range of organic compounds in its habitat. Its optimal growth temperature of 29.0°C implies that this strain may be well-suited for environments that are moderately warm, such as soil or water ecosystems in temperate regions.↵↵Given the traits of Stenotrophomonas daejeonensis strain JCM 16244, it may play a significant role in biogeochemical cycles, particularly in the degradation of organic materials and nutrient cycling. Its metabolic capabilities and adaptability position it as a potential contributor to microbial diversity and ecological balance in its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas daejeonensis Gram-negative aerobic 29 mesophilic non-spore-forming 659018 LDJP00000000.1 Bac0012974 Tamlana sp. s12 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tamlana Tamlana sp. s12 1630406 LDKC00000000.1 Bac0012975 Kocuria sp. SM24M-10 KSP00177 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. SM24M-10 1660349 LDNX00000000.1 Bac0012976 Moellerella wisconsensis strain GTA-1455 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Moellerella Moellerella wisconsensis 158849 LDOF00000000.1 Bac0012977 Streptococcus suis strain ISU2812 Ssuis28-12_c436 "Streptococcus suis strain ISU2812 (designated Ssuis28-12_c436) is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains, pairs, or singles. This bacterium thrives optimally at a temperature of 37.0°C, suggesting its adaptation to host-associated environments, potentially indicating a specialized habitat that may include mucosal surfaces of mammals. As a facultative anaerobe, S. suis strain ISU2812 can grow in the presence or absence of oxygen, allowing it to occupy diverse ecological niches that may vary in oxygen availability.↵↵The structural and physiological traits of this strain position it within a complex microbial community, where it may engage in interactions with other microorganisms or host systems. The specific habitat preferences and growth conditions of S. suis strain ISU2812 underscore its potential role in specialized environments, possibly reflecting its adaptation to the host's microbiota. Understanding these traits may provide insights into its ecological roles, including nutrient cycling or interactions with the immune system in host organisms. Further investigation into the metabolic pathways and ecological interactions of this strain could elucidate its function within its specialized habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 LDOK00000000.1 Bac0012978 Photobacterium aquae strain CGMCC 1.12159 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium aquae 1195763 LDOT00000000.1 Bac0012979 Niallia circulans strain RIT379 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Niallia Niallia circulans 1397 LDPH00000000.1 Bac0012980 Mycobacterium haemophilum strain UC3 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium haemophilum aerobic 29311 LDPR00000000.1 Bac0012981 Aureimonas ureilytica strain NS365 "Aureimonas ureilytica strain NS365 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This strain is notable for its adaptation to environments where oxygen is scarce, indicating a specialized metabolic capability that allows it to exploit niches that may be inhospitable to aerobic microorganisms. ↵↵The rod shape of A. ureilytica NS365 may contribute to its motility and colonization abilities in various substrates, although specific mechanisms of mobility or attachment have not been detailed in the available data. The preference for an optimal temperature of 29.0°C suggests that this strain may be well-suited for environments that are moderately warm, potentially influencing its distribution in natural habitats.↵↵Given its anaerobic metabolism, A. ureilytica strain NS365 may play a significant role in biogeochemical cycles, particularly in the degradation of organic matter in low-oxygen environments. The unique combination of its Gram-negative structure and anaerobic growth requirements could facilitate interactions with other microbial communities, highlighting its ecological importance in maintaining the balance of microbial ecosystems, especially in anaerobic zones such as sediments or deep water columns. Further research into its metabolic pathways and interactions with surrounding microorganisms could provide deeper insights into its ecological roles and potential applications in biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas ureilytica Gram-negative rod anaerobic 29 mesophilic 401562 LDQA00000000.1 Bac0012982 Curtobacterium oceanosedimentum strain NS359 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium oceanosedimentum 465820 LDRC00000000.1 Bac0012983 Rothia kristinae strain RSA28 "Rothia kristinae strain RSA28 is a Gram-positive coccus that predominantly inhabits the skin. This strain is characterized by its spherical shape, which is typical of cocci, and it reflects the morphological traits commonly associated with members of the genus Rothia. ↵↵As a skin-dwelling microbe, Rothia kristinae strain RSA28 may play a role in the complex microbial ecosystem of the human microbiome, contributing to skin health and homeostasis. The presence of Gram-positive bacteria like Rothia is often associated with the skin's ability to resist pathogenic invaders, potentially offering a protective function. ↵↵The adaptability of Rothia kristinae to the skin environment suggests that it may interact with various host factors and other microbial species, influencing both microbial diversity and the overall health of the skin surface. Further studies on this strain could elucidate its specific interactions within the skin microbiome, as well as its potential contributions to skin barrier function and immune responses. This highlights the importance of understanding the role of such microbes in maintaining skin health and preventing dysbiosis." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia kristinae positive Coccus skin 37923 LDRD00000000.1 Bac0012984 Leucobacter chromiiresistens strain NS354 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter chromiiresistens 1079994 LDRK00000000.1 Bac0012985 Microbacterium testaceum strain NS220 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium testaceum 2033 LDRT00000000.1 Bac0012986 Pseudacidovorax intermedius strain NS331 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Pseudacidovorax Pseudacidovorax intermedius 433924 LDSL00000000.1 Bac0012987 Pseudomonas oryzihabitans strain SB14 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas oryzihabitans 47885 LDSW00000000.1 Bac0012988 Sphingomonas endophytica strain NS334 "Sphingomonas endophytica strain NS334 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and exhibits optimal growth at a temperature of 29.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for survival and reproduction in its environmental niche.↵↵The Gram-negative cell wall structure of S. endophytica strain NS334 is indicative of its potential interactions with other microbial communities and its environmental resilience. The rod shape may confer advantages in motility and nutrient acquisition, allowing the bacterium to effectively navigate through various substrates. ↵↵Given its aerobic requirement, S. endophytica strain NS334 likely plays a role in biogeochemical cycles, particularly in environments where oxygen is readily available. The optimal growth temperature of 29.0°C suggests that it may be well adapted to moderate climates or specific ecological niches where such conditions prevail.↵↵This combination of traits positions S. endophytica strain NS334 as a potentially significant player in its ecosystem, possibly contributing to the degradation of organic material or the cycling of nutrients within its habitat. Further investigation into its metabolic pathways and interactions with other microorganisms could unveil novel ecological roles that this strain occupies within its environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas endophytica Gram-negative rod aerobic 29 mesophilic non-spore-forming 869719 LDTB00000000.1 Bac0012989 Sphingomonas sanguinis strain NS258 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sanguinis 33051 LDTC00000000.1 Bac0012990 Chromobacterium sp. LK11 71 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium sp. LK11 1628212 LDUR00000000.1 Bac0012991 Acinetobacter sp. C15 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. C15 1661746 LDWD00000000.1 Bac0012992 Burkholderia cepacia strain LK29 189 "Burkholderia cepacia strain LK29 189 is a Gram-negative microaerophilic bacterium, characterized by its ability to thrive in environments with low oxygen levels. This strain belongs to the Burkholderia genus, which is known for its metabolic versatility and adaptability to various ecological niches. The microaerophilic requirement indicates that strain LK29 189 may be particularly well-suited for environments where oxygen is present in limited quantities, such as in soil or water with organic matter decomposition.↵↵The Gram-negative nature of this strain suggests a complex cell envelope structure, including an outer membrane that can affect its interaction with other microorganisms and its resistance to certain antibiotics. These traits may offer insights into its ecological role and potential applications in bioremediation or agriculture, where it might contribute to nutrient cycling or assist in the degradation of pollutants.↵↵Understanding the specific conditions under which Burkholderia cepacia strain LK29 189 thrives can inform its potential use in biotechnological applications, particularly in microaerophilic environments. This highlights the importance of studying its metabolic pathways and interactions within microbial communities, as such insights could lead to novel strategies for harnessing its capabilities in various environmental contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 LDWR00000000.1 Bac0012993 Chitinispirillum alkaliphilum strain ACht6-1 Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae Chitinispirillum Chitinispirillum alkaliphilum 1008392 LDWW00000000.1 Bac0012994 Candidatus Dadabacteria bacterium CSP1-2 XU11_C0089 Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria Candidatus Dadabacteria bacterium CSP1-2 1640508 LDXN00000000.1 Bac0012995 Bacillus coahuilensis p1.1.43 ABFP000059 "Bacillus coahuilensis p1.1.43 ABFP000059 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores, a trait that is indicative of its resilience in various environmental conditions. This microorganism exhibits optimal growth at a temperature of 32.0°C, suggesting a preference for mesophilic environments. ↵↵As a member of the Bacillus genus, B. coahuilensis p1.1.43 ABFP000059 shares common traits with other Bacillus species, including the capacity for sporulation, which allows it to survive extreme conditions such as nutrient depletion and desiccation. The spore-forming ability not only contributes to its survival but also plays a significant role in its potential ecological interactions, including soil enrichment and nutrient cycling.↵↵The specific temperature preference of 32.0°C positions this microbe within a range that is conducive to growth in temperate climates. The ecological implications of this organism's traits suggest that it may thrive in environments that experience moderate temperatures and nutrient availability, potentially contributing to the microbial diversity and functionality of soil ecosystems. Further studies could elucidate its role in biogeochemical processes or its interactions with other microorganisms in its habitat." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus coahuilensis Gram-positive rod 32 mesophilic spore-forming 408580 LDYG00000000.1 Bac0012996 Escherichia coli strain AW1.3 107 "Escherichia coli strain AW1.3 107 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which is consistent with the normal physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli AW1.3 107 can utilize both aerobic and anaerobic metabolic pathways, allowing it to thrive in diverse environmental conditions within the host.↵↵The ability of this strain to survive and proliferate in the presence or absence of oxygen suggests a versatile metabolic capacity, which is characteristic of many E. coli strains. This trait not only enables it to occupy various niches within the host but also may facilitate its resilience to fluctuating oxygen levels in different tissues or microbiomes. Understanding the specific traits of E. coli AW1.3 107 can provide insights into its potential interactions within the host environment and its role in the broader microbial community. Its association with host-associated habitats may indicate a specialized function in nutrient cycling or symbiotic relationships, underscoring the complexity of microbial life in host systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LDYI00000000.1 Bac0012997 Flavobacterium sp. ABG Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. ABG 1423322 LEKS00000000.1 Bac0012998 Megasphaera cerevisiae DSM 20462 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera cerevisiae anaerobic 1122219 LEKT00000000.1 Bac0012999 Enterococcus faecium strain 316EA1 "Enterococcus faecium strain 316EA1 is a Gram-positive coccus that has been isolated from fermented mare milk. This strain exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. The presence of this microbe in fermented mare milk suggests a role in the fermentation process, potentially contributing to the flavor and preservation of this traditional dairy product. ↵↵Enterococcus faecium is known for its adaptability to various environments, which is reflected in its ability to grow in the presence of oxygen as well as in its absence. The unique habitat of fermented mare milk may provide a selective advantage for strain 316EA1, allowing it to utilize the substrates available in this niche effectively. Additionally, its cocci shape is characteristic of the Enterococcus genus and may play a role in its survival and metabolic processes within the complex microbial community found in fermented dairy products. ↵↵The ecological significance of Enterococcus faecium strain 316EA1 may extend beyond its fermentation capabilities, as it could interact with other microorganisms in the milk environment, influencing the overall microbial dynamics and contributing to the complex flavor profile of the final product. Further investigation into this strain's metabolic pathways could provide insights into its functional contributions within its habitat." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 LERI00000000.1 Bac0013000 Citrobacter sp. MGH100 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. MGH100 1686377 LESM00000000.1 Bac0013001 Enterobacter sp. BIDMC92 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. BIDMC92 1594172 LETR00000000.1 Bac0013002 Escherichia coli strain BIDMC112 "Escherichia coli strain BIDMC112 is a Gram-negative, rod-shaped bacterium that is typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the normal body temperature of many warm-blooded hosts, suggesting a close association with host environments. As a facultative anaerobe, E. coli strain BIDMC112 can adapt to both aerobic and anaerobic conditions, enabling it to survive in diverse environments, including the gastrointestinal tracts of hosts.↵↵The habitat of E. coli strain BIDMC112 is primarily host-associated, indicating its potential role in the microbiota of specific organisms. This association may be significant for understanding its interactions within the host's microbiome, as it could contribute to various metabolic processes or influence host health. The adaptability of this strain to different oxygen levels suggests a versatile metabolic capability, allowing it to thrive in fluctuating conditions within the host.↵↵Overall, the traits of E. coli strain BIDMC112 underscore its potential ecological role as a commensal organism within host-associated environments, where it may participate in nutrient cycling and contribute to the maintenance of microbial balance. Further studies could elucidate its specific functions and interactions within the host microbiome, providing insights into its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LEUM00000000.1 Bac0013003 Klebsiella pneumoniae strain CHS153 "Klebsiella pneumoniae strain CHS153 is a Gram-negative, rod-shaped bacterium that typically exists in host-associated environments, demonstrating a versatile lifestyle as a chemoheterotroph. This strain is characterized by its ability to form cellular arrangements in chains, pairs, or as single cells, which may influence its colonization and interaction with host tissues. K. pneumoniae strain CHS153 does not undergo sporulation, indicating a reliance on specific environmental conditions for survival and growth. ↵↵The optimal growth temperature for this strain is 37.0 °C, aligning with the typical physiological temperature of mammalian hosts, which suggests a potential adaptation to thrive within host organisms. As a facultative anaerobe, K. pneumoniae strain CHS153 can grow in both aerobic and anaerobic conditions, providing it with a competitive advantage in diverse microenvironments within the host. ↵↵Understanding the ecological role of K. pneumoniae strain CHS153 in host-associated habitats could provide insights into its interactions with the host immune system and its potential contributions to microbial community dynamics. This strain exemplifies the adaptability of certain pathogens, which can exist in various states and conditions, thus underscoring the complexity of microbe-host relationships in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 LEUQ00000000.1 Bac0013004 Helicobacter pylori strain UM119 "Helicobacter pylori strain UM119 is a Gram-negative bacterium characterized by its spirilla morphology and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, indicating its adaptation to the human body, where it is typically found in association with host tissues. H. pylori strain UM119 exhibits a microaerophilic oxygen requirement, suggesting that it flourishes in environments with reduced oxygen levels, which is consistent with its colonization of the gastric mucosa.↵↵As a member of the Helicobacter genus, strain UM119 likely plays a role in the complex interactions within the host's gastrointestinal tract. Its microaerophilic nature may enable it to exploit the unique biochemical niches present in the stomach, where oxygen levels are lower than in the surrounding environment. This adaptation not only aids in its survival but may also influence the composition of the microbial community within the gastric ecosystem. Understanding the physiological traits of H. pylori strain UM119 can provide insights into its ecological role and potential interactions with both host and other microbial species in the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFBY00000000.1 Bac0013005 Helicobacter pylori strain UM139 "Helicobacter pylori strain UM139 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, a condition that aligns with its habitat as a host-associated organism, typically found in the gastric environment of humans and other mammals. ↵↵The microaerophilic nature of H. pylori strain UM139 suggests that it requires reduced levels of oxygen for growth, which is consistent with its adaptation to the acidic and low-oxygen conditions of the stomach lining. This unique adaptation may play a critical role in its survival and persistence within the gastric mucus layer, where it can evade the host’s immune response.↵↵Understanding the physiological traits of H. pylori strain UM139 not only contributes to the broader knowledge of gastric microbiota but also highlights the evolutionary strategies that allow this organism to inhabit a specialized ecological niche. The strain’s ability to maintain its structural integrity and metabolic function in a microaerophilic environment illustrates the complex interactions between host and microbe, emphasizing the importance of environmental factors in shaping microbial lifestyles." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFCA00000000.1 Bac0013006 Frankia sp. R43 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. R43 269536 LFCW00000000.1 Bac0013007 Helicobacter pylori strain UM087 "Helicobacter pylori strain UM087 is a Gram-negative bacterium characterized by its spirilla shape and occurrence in single-cell arrangements. This microbe is adapted to a microaerophilic environment, thriving optimally at a temperature of 37.0°C, which aligns with the typical conditions found in the human stomach, its primary habitat. ↵↵As a host-associated organism, H. pylori strain UM087 likely engages in complex interactions with its host, potentially influencing gastric physiology. While the precise pathogenic potential of this strain has not been detailed, the ecological niche it occupies suggests a role in the gastric microbiome, which may contribute to the overall health or disease state of the host. The microaerophilic nature of H. pylori indicates it requires limited oxygen levels, which is consistent with the low-oxygen environment of the stomach. ↵↵This strain's adaptation to such conditions underscores its evolutionary specialization, enabling it to colonize and persist in a challenging habitat that is inhospitable to many other microbial species. Further studies on H. pylori strain UM087 may provide insights into its metabolic capabilities and interactions within the gastric ecosystem, enhancing our understanding of host-microbe dynamics in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFDR00000000.1 Bac0013008 Helicobacter pylori strain UM300 "Helicobacter pylori strain UM300 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with its habitat as a host-associated organism, often found in the gastric environment of mammals. H. pylori strain UM300 exhibits a microaerophilic oxygen requirement, indicating that it requires reduced levels of oxygen for optimal growth, a condition typically found in the stomach where it can evade the harsher atmospheric oxygen levels.↵↵The microaerophilic nature of H. pylori strain UM300 suggests specialized adaptations that allow it to survive in the acidic gastric environment while competing with other microbial inhabitants. Its spiral shape may contribute to its motility, enabling it to navigate the viscous gastric mucus and colonize the gastric epithelium effectively. The ability to thrive in this niche underscores the potential significance of H. pylori in the context of host-microbe interactions and its role within the gastric microbiome. Understanding the ecological role of H. pylori strain UM300 could provide insights into its interactions with the host and other microbial communities in the gastrointestinal tract, highlighting its potential influence on gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFIT00000000.1 Bac0013009 Bradyrhizobium nitroreducens strain TSA1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium nitroreducens 709803 LFJC00000000.1 Bac0013010 Candidatus Burkholderia brachyanthoides strain UZHbot7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Candidatus Burkholderia brachyanthoides 1090379 LFJI00000000.1 Bac0013011 Ligilactobacillus animalis strain 14-7927 14-7927_48 "Ligilactobacillus animalis strain 14-7927 (14-7927_48) is a Gram-positive, rod-shaped bacterium classified within the genus Ligilactobacillus. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Such metabolic flexibility is indicative of its ability to adapt to varying ecological niches, which may include the gastrointestinal tracts of animals where it could contribute to gut health.↵↵The rod shape of L. animalis is characteristic of many lactic acid bacteria, which are known for their role in fermentation processes. Given its classification, Ligilactobacillus animalis strain 14-7927 likely plays a role in the fermentation of carbohydrates, potentially producing lactic acid as a primary metabolic end product. This trait may suggest its involvement in food production processes or in the maintenance of a healthy microbiome in host organisms.↵↵The facultative anaerobic nature of this strain suggests adaptability to fluctuating oxygen levels, which may be advantageous in various environments, including those found in the digestive systems of animals. Understanding the metabolic capabilities and ecological roles of Ligilactobacillus animalis strain 14-7927 could provide insights into its potential applications in probiotics or as a starter culture in food fermentation. The strain's ability to thrive in diverse conditions may also reflect its evolutionary adaptations to host-associated environments, highlighting its significance in studies of microbial ecology and symbiosis." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus animalis Positive Rod Facultative anaerobe 1605 LFJM00000000.1 Bac0013012 Helicobacter pylori strain UM202 "Helicobacter pylori strain UM202 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This strain thrives at an optimal temperature of 37.0°C, which aligns with its habitat as a host-associated organism, primarily found in the gastric environment of mammals, including humans.↵↵As a member of the Helicobacter genus, strain UM202 exhibits typical traits associated with this group, such as a helical morphology that may facilitate motility in viscous environments like the gastric mucus layer. The microaerophilic nature of this strain indicates a physiological adaptation to environments with lower levels of oxygen, which is consistent with the oxygen conditions present in the stomach.↵↵The association of Helicobacter pylori with the gastric mucosa suggests potential roles in influencing local microbial communities and host interactions. Understanding the specific traits of strain UM202 may contribute to broader insights into the ecological dynamics of the gastric microbiome, including its potential interactions with other microbial species and its implications for gastric health. Further research on this strain could elucidate its unique contributions to the host-associated microbial ecosystem, particularly in the context of the complex interplay between host defense mechanisms and microbial colonization." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFKE00000000.1 Bac0013013 Helicobacter pylori strain UM209 "Helicobacter pylori strain UM209 is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat in host-associated environments, often found within the gastric mucosa of humans. The microaerophilic nature of H. pylori indicates that it requires low levels of oxygen for growth, which is significant given its adaptation to the oxygen-limited conditions of the stomach.↵↵The unique morphology of H. pylori, with its spirilla shape, is thought to facilitate motility in the viscous gastric environment, enabling the microbe to navigate the mucus layer. This trait may enhance its ability to colonize and persist in the host's gastric niche. Understanding the specific growth requirements and cellular characteristics of strain UM209 contributes to the broader knowledge of H. pylori's biology and its interactions with host organisms. ↵↵Furthermore, the association of H. pylori with host environments emphasizes the importance of studying this bacterium not only for its clinical implications but also for its role in the gastric microbiome, where it may influence host health and disease outcomes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFKF00000000.1 Bac0013014 Helicobacter pylori strain UM291 "Helicobacter pylori strain UM291 is a Gram-negative bacterium characterized by its spirilla shape and a tendency to exist as single cells. This microbe is typically found in host-associated environments, suggesting a close association with the gastrointestinal tract of its host organisms. Strain UM291 thrives optimally at a temperature of 37.0°C, aligning with the physiological temperature of the human body, which is indicative of its adaptation to a host-associated niche. ↵↵As a microaerophilic organism, H. pylori strain UM291 requires reduced levels of oxygen for growth, which reflects its ecological adaptation to the gastric environment where oxygen concentrations are lower than in the atmosphere. The combination of its Gram-negative cell wall structure and unique morphological characteristics may influence its interaction with the host immune system and its survival in the acidic conditions of the stomach.↵↵Understanding the physiological traits of H. pylori strain UM291 provides insight into its potential roles and interactions within the gastrointestinal ecosystem. Given its microaerophilic nature and host-associated habitat, this strain may play a significant role in shaping the microbial diversity of the stomach, influencing both host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFKJ00000000.1 Bac0013015 Helicobacter pylori strain UM196 "Helicobacter pylori strain UM196 is a Gram-negative, microaerophilic bacterium characterized by its spiral-shaped morphology and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to the physiological conditions of its host environment. ↵↵As a member of the Helicobacter genus, H. pylori strain UM196 is typically associated with the gastrointestinal tract of its hosts, where it can establish a niche within the mucosal lining. The microaerophilic nature of this bacterium suggests that it requires reduced oxygen levels for growth, which aligns with its ecological adaptation to the stomach's unique environment, where oxygen availability is limited. ↵↵The host-associated habitat of H. pylori strain UM196 underscores its potential role in the complex microbial communities of the gastrointestinal system, where it may contribute to various host-microbiome interactions. The specific traits of this strain could provide insights into its ecological dynamics, including its potential interactions with other microbial species and its influence on host health and disease. Understanding the precise ecological role of H. pylori strain UM196 within its habitat may further illuminate the intricate relationships that exist within the gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LFKN00000000.1 Bac0013016 Candidatus Paraburkholderia kirkii strain UZHbot2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Candidatus Paraburkholderia kirkii 198822 LFKV00000000.1 Bac0013017 Cellulomonas sp. A375-1 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. A375-1 1672219 LFKW00000000.1 Bac0013018 Candidatus Paraburkholderia calva strain UZHbot6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Candidatus Paraburkholderia calva 242161 LFLF00000000.1 Bac0013019 Xanthomonas sp. NCPPB 1128 strain NCPPB1128 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas sp. NCPPB 1128 1775876 LFME00000000.1 Bac0013020 Streptomyces roseus strain ATCC 31245 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces roseus 66430 LFML00000000.1 Bac0013021 Chryseobacterium sp. FH2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. FH2 1674291 LFNE00000000.1 Bac0013022 Streptomyces viridochromogenes strain NRRL 3414 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces viridochromogenes 1938 LFNT00000000.1 Bac0013023 Mycolicibacter kumamotonensis strain Roo Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter kumamotonensis 354243 LFOE00000000.1 Bac0013024 Mycobacterium heckeshornense strain RLE Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium heckeshornense 110505 LFOF00000000.1 Bac0013025 Vibrio lentus strain BSW13 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus 136468 LFQI00000000.1 Bac0013026 Priestia megaterium strain Riq5 "Priestia megaterium strain Riq5 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, indicating its resilience in various environmental conditions. This strain is classified as an aerobe, necessitating oxygen for its metabolic processes, and is capable of thriving in multiple habitats, which suggests a versatile adaptability to different ecological niches. ↵↵The sporulation capability of P. megaterium Riq5 allows it to form spores that can endure harsh conditions, thus contributing to its survival and distribution in diverse environments. This trait is particularly significant, as it may enhance the strain's potential for biotechnological applications, such as in the production of enzymes or bioactive compounds. The ability to inhabit multiple environments underscores its ecological flexibility, which may play a role in nutrient cycling and microbial community dynamics.↵↵Understanding the specific ecological roles of P. megaterium strain Riq5 could provide insights into its interactions within microbial ecosystems, particularly in soil or other environments where it may contribute to the degradation of organic materials or the promotion of plant growth. The combination of its aerobic metabolism and sporulation capability suggests that this strain may be well-suited for bioremediation efforts, where oxygen-rich conditions are often present." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 LFQJ00000000.1 Bac0013027 Acinetobacter sp. VT 511 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. VT 511 1675902 LFRE00000000.1 Bac0013028 Actinobaculum suis strain U311 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum suis anaerobic 1657 LFUS00000000.1 Bac0013029 miscellaneous Crenarchaeota group-1 archaeon SG8-32-1 Thermoproteati Candidatus Bathyarchaeota miscellaneous Crenarchaeota group-1 archaeon SG8-32-1 1685124 LFWU00000000.1 Bac0013030 miscellaneous Crenarchaeota group-1 archaeon SG8-32-3 Thermoproteati Candidatus Bathyarchaeota miscellaneous Crenarchaeota group-1 archaeon SG8-32-3 1685125 LFWV00000000.1 Bac0013031 miscellaneous Crenarchaeota group-15 archaeon DG-45 Thermoproteati Candidatus Bathyarchaeota miscellaneous Crenarchaeota group-15 archaeon DG-45 1685127 LFWZ00000000.1 Bac0013032 Mycoplasma sp. HU2014 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. HU2014 aerobic 1664275 LFYS00000000.1 Bac0013033 Ralstonia sp. MD27 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia sp. MD27 1676617 LFZM00000000.1 Bac0013034 Bacillus sp. FJAT-27916 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-27916 1679169 LFZV00000000.1 Bac0013035 Moellerella wisconsensis ATCC 35017 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Moellerella Moellerella wisconsensis 1354267 LGAA00000000.1 Bac0013036 Ensifer adhaerens strain SD006 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer adhaerens 106592 LGAP00000000.1 Bac0013037 Lactobacillus delbrueckii subsp. indicus strain JCM 15610 "Lactobacillus delbrueckii subsp. indicus strain JCM 15610 is a Gram-positive, rod-shaped bacterium that characteristically arranges itself in chains. This strain thrives optimally at a temperature of 42.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. ↵↵L. delbrueckii subsp. indicus is known to inhabit a variety of ecological niches, which may contribute to its versatility in fermentation processes, particularly in dairy products. The ability of this strain to grow in diverse habitats suggests a potential for significant roles in both food production and probiotic applications.↵↵The unique combination of its temperature preference and oxygen utilization strategy may enable L. delbrueckii subsp. indicus strain JCM 15610 to outcompete other microbial populations in thermophilic environments, thus highlighting its ecological adaptability and possible importance in industrial microbiology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1584 LGAS00000000.1 Bac0013038 Streptomyces sp. WM6368 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WM6368 1415554 LGDA00000000.1 Bac0013039 Streptomyces sp. AS58 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AS58 1519489 LGDU00000000.1 Bac0013040 Streptomyces sp. NRRL WC-3723 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL WC-3723 1519491 LGDX00000000.1 Bac0013041 Micromonospora sp. NRRL B-16802 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. NRRL B-16802 1415541 LGEB00000000.1 Bac0013042 Saccharothrix sp. NRRL B-16348 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix sp. NRRL B-16348 1415542 LGED00000000.1 Bac0013043 Streptomyces sp. NRRL F-6491 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL F-6491 1519495 LGEE00000000.1 Bac0013044 Thermococcales archaeon 44_46 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcales archaeon 44_46 1635283 LGET00000000.1 Bac0013045 Thermococcus sibiricus "Thermococcus sibiricus is a cocci-shaped, nonsporulating archaeon that thrives in anaerobic conditions, primarily found in hot springs. This microbe is classified as an organotroph, indicating that it derives its energy from organic compounds, which is consistent with its adaptation to the nutrient-rich environments often present in thermal habitats. ↵↵The ability of T. sibiricus to inhabit extreme thermal environments suggests a specialized metabolic pathway that allows it to efficiently process organic materials under high temperatures, a trait that is characteristic of many thermophilic organisms. Its anaerobic requirement aligns with the conditions typically found in hot springs, where oxygen levels are often limited due to the geothermal activity and microbial consumption of available oxygen.↵↵Additionally, the presence of T. sibiricus in these extreme environments contributes to our understanding of microbial diversity and adaptation. The unique physiological traits exhibited by this archaeon not only highlight its role in the biogeochemical cycling of organic matter in hot springs but also underscore the potential for biotechnological applications, such as enzyme production, in industries that require high-temperature processes. The ecological niche occupied by T. sibiricus illustrates the remarkable adaptability of life forms in extreme conditions, suggesting that similar extremophiles may hold keys to understanding life's resilience and evolutionary strategies." Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sibiricus Cocci Yes 1 1 Anaerobic Organotroph Hyperthermophilic Hot spring Free living Nonsporulating 172049 LGFD00000000.1 Bac0013046 Thermotoga sp. 50_1627 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. 50_1627 1635260 LGFH00000000.1 Bac0013047 Bellilinea caldifistulae strain GOMI-1 Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Bellilinea Bellilinea caldifistulae anaerobic 45 thermophilic non-spore-forming 360411 LGHJ00000000.1 Bac0013048 Bradyrhizobium sp. NAS96.2 Bradyrhizobium_NAS96.2_rep_c901 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. NAS96.2 1680160 LGHK00000000.1 Bac0013049 Bradyrhizobium sp. NAS80.1 Bradyrhizobium_NAS_80.1_rep_c11899 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. NAS80.1 1680159 LGHL00000000.1 Bac0013050 Clostridium botulinum strain ATCC 23387 "Clostridium botulinum strain ATCC 23387 is a Gram-positive, rod-shaped bacterium characterized by its ability to form pairs, singles, and chains. This strain is classified as an anaerobe, thriving optimally at a temperature of 37.0°C, and utilizes a chemoorganotrophic metabolism for energy, deriving it from organic compounds. C. botulinum is known to inhabit diverse environments, although specific habitats have not been detailed in the available data.↵↵The anaerobic lifestyle of C. botulinum strain ATCC 23387 suggests that it is adapted to low-oxygen environments, which is a typical characteristic of Clostridia. This adaptation may allow the strain to occupy ecological niches that are less accessible to aerobic organisms, potentially including decaying organic matter and sediments where oxygen levels are naturally low. Understanding the habitats and growth conditions of this strain could provide insights into its role in nutrient cycling and the microbial dynamics of anaerobic environments." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1491 LGII00000000.1 Bac0013051 Chryseobacterium sp. Hurlbut01 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. Hurlbut01 1681828 LGIP00000000.1 Bac0013052 Pseudomonas sp. RIT-PI-a Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RIT-PI-a 1681194 LGIR00000000.1 Bac0013053 Streptomyces sp. NRRL S-4 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL S-4 1519471 LGKJ00000000.1 Bac0013054 Thermanaerothrix daxensis strain GNS-1 Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Thermanaerothrix Thermanaerothrix daxensis 869279 LGKO00000000.1 Bac0013055 Herpetosiphon geysericola strain DSM 7119 Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon geysericola aerobic 70996 LGKP00000000.1 Bac0013056 Pseudomonas syringae pv. cilantro strain 0788_9 "Pseudomonas syringae pv. cilantro strain 0788_9 is a Gram-negative, rod-shaped bacterium that typically arranges itself in singles. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy. It is an aerobic organism, requiring oxygen for its metabolic processes. ↵↵The habitat of Pseudomonas syringae pv. cilantro strain 0788_9 is described as multiple, suggesting that it can inhabit various environments, potentially including soil and plant surfaces, which are common ecological niches for members of the Pseudomonas genus. The ability of this strain to thrive in diverse habitats may be linked to its metabolic versatility as a heterotroph, allowing it to utilize a wide range of organic substrates for growth.↵↵In summary, the combination of its Gram-negative cell wall structure, rod shape, and aerobic metabolism indicates that Pseudomonas syringae pv. cilantro strain 0788_9 is well-adapted to its ecological roles in environments where oxygen and organic matter are available. This adaptability could play a significant role in its interactions within microbial communities, particularly in agricultural settings where it may coexist with a variety of other microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 LGLN00000000.1 Bac0013057 Pararhizobium polonicum strain F5.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Pararhizobium Pararhizobium polonicum 1612624 LGLV00000000.1 Bac0013058 Escherichia coli strain 703098 "Escherichia coli strain 703098 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain typically appears in pairs or as single cells, reflecting its versatile arrangement in various ecological niches. E. coli strain 703098 thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of the mammalian intestinal tract, suggesting its adaptation to a warm-blooded host environment.↵↵As a facultative anaerobe, strain 703098 demonstrates metabolic flexibility, allowing it to survive and proliferate in both aerobic and anaerobic conditions. This trait is significant as it enables the organism to thrive in diverse microhabitats within the host, where oxygen availability may vary. The ability to switch between aerobic respiration and fermentation can confer a competitive advantage in microbial communities, particularly in the gut, where differing local conditions can influence nutrient availability and microbial interactions.↵↵Understanding the specific ecological roles of E. coli strain 703098 could shed light on its contributions to host health and gut microbiome dynamics, emphasizing the intricate relationships between bacteria and their hosts in maintaining homeostasis. Further studies may reveal how this strain interacts with other microbes and the host immune system, potentially influencing overall gut health and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LGMY00000000.1 Bac0013059 Azospirillum sp. TSA6c Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSA6c 709813 LGQS00000000.1 Bac0013060 Azospirillum sp. TSH64 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSH64 652740 LGQW00000000.1 Bac0013061 Azospirillum sp. TSO22-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSO22-1 716789 LGQZ00000000.1 Bac0013062 Rhodobacteraceae bacterium SB2 pfor_37 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium SB2 1689867 LGRT00000000.1 Bac0013063 Hydrocoleum sp. CS-953 1501 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Hydrocoleum Hydrocoleum sp. CS-953 1671698 LGSU00000000.1 Bac0013064 Enhydrobacter aerosaccus strain CGMCC9176 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Enhydrobacter Enhydrobacter aerosaccus 225324 LGSW00000000.1 Bac0013065 Mycolicibacterium wolinskyi strain CDC_01 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium wolinskyi 59750 LGTW00000000.1 Bac0013066 Aneurinibacillus migulanus strain DSM 2895 "Aneurinibacillus migulanus strain DSM 2895 is a rod-shaped bacterium characterized by its distinct morphological features. This strain belongs to the genus Aneurinibacillus, known for its capacity to thrive in various environments. The rod shape of A. migulanus is indicative of its cellular structure, which may influence its growth patterns and ecological interactions.↵↵This strain's specific physiological traits, while not detailed, suggest it may possess metabolic pathways that are typical of the Aneurinibacillus genus, potentially allowing it to degrade complex organic compounds. Such capabilities could make A. migulanus an important player in biodegradation processes or nutrient cycling within its habitat.↵↵The ecological implications of A. migulanus strain DSM 2895 may extend to its role in soil health or waste management, where rod-shaped bacteria often contribute to the breakdown of organic material, fostering nutrient availability for plants and other organisms. Further investigations into the metabolic functions and environmental interactions of this strain could provide insights into its potential applications in bioremediation or as a component of microbial communities in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Aneurinibacillus Aneurinibacillus migulanus Rod 47500 LGUG00000000.1 Bac0013067 Streptomyces decoyicus strain NRRL 2666 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces decoyicus 29 mesophilic spore-forming 249567 LGUU00000000.1 Bac0013068 Escherichia coli strain CFSAN026843 "Escherichia coli strain CFSAN026843 is a Gram-negative, rod-shaped bacterium typically found in host-associated environments. This strain exhibits a cellular arrangement primarily in pairs and singles, which is characteristic of many E. coli strains. It thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions commonly encountered in mammalian hosts.↵↵As a facultative anaerobe, E. coli strain CFSAN026843 is capable of growth in both aerobic and anaerobic conditions, allowing it to adapt to various microenvironments within the host. This versatility in oxygen utilization may contribute to its survival and proliferation in diverse ecological niches associated with the host, including the gastrointestinal tract.↵↵Understanding the characteristics of E. coli strain CFSAN026843 can shed light on its potential roles in microbial communities within hosts, particularly in relation to nutrient metabolism and interactions with other microbiota. The strain's facultative anaerobic nature, combined with its rod shape and specific growth temperature, suggests that it could play a significant role in the metabolic processes occurring in the gut environment, influencing host health and digestion." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LGZN00000000.1 Bac0013069 Xanthomonas arboricola strain CFSAN033082 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 56448 LHBP00000000.1 Bac0013070 Enterococcus sp. RIT-PI-f Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. RIT-PI-f 1690244 LHOX00000000.1 Bac0013071 Vibrio hepatarius strain DSM 19134 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio hepatarius aerobic 171383 LHPI00000000.1 Bac0013072 Vibrio nereis strain DSM 19584 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio nereis aerobic 693 LHPJ00000000.1 Bac0013073 Vibrio xuii strain DSM 17185 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio xuii 170661 LHPK00000000.1 Bac0013074 Enterococcus canintestini strain 49 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus canintestini 317010 LHUG00000000.1 Bac0013075 Xanthomonas oryzae strain X11-5A "Xanthomonas oryzae strain X11-5A is a Gram-negative, rod-shaped bacterium that exhibits aerobic growth, indicating its requirement for oxygen in metabolic processes. This strain is host-associated, suggesting a specialized relationship with its host organism, which may provide essential nutrients or a conducive environment for its survival and proliferation. ↵↵The Gram-negative cell wall structure of X. oryzae, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, may contribute to its adaptability in host-associated habitats. The rod shape of the bacterium is typical for many species within the Xanthomonadaceae family, which often exhibit motility that facilitates colonization of host tissues.↵↵Xanthomonas oryzae strains are known for their association with agricultural plants, and while this description does not specify pathogenicity, it highlights the potential for interactions with plant hosts that could influence agricultural practices. Understanding the ecological role of X11-5A within its host environment may offer insights into its contributions to nutrient cycling or its effects on host health and development. This knowledge could prove valuable in the context of crop management and disease prevention strategies in agricultural systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living 347 LHUJ00000000.1 Bac0013076 Acidovorax sp. SD340 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. SD340 1690268 LHUP00000000.1 Bac0013077 Clostridium homopropionicum DSM 5847 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium homopropionicum anaerobic 1121318 LHUR00000000.1 Bac0013078 Candidate division MSBL1 archaeon SCGC-AAA259A05 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259A05 1698259 LHXJ00000000.1 Bac0013079 Candidate division MSBL1 archaeon SCGC-AAA259B11 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259B11 1698260 LHXK00000000.1 Bac0013080 Candidate division MSBL1 archaeon SCGC-AAA259D18 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259D18 1698262 LHXM00000000.1 Bac0013081 Candidate division MSBL1 archaeon SCGC-AAA259I14 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA259I14 1698268 LHXS00000000.1 Bac0013082 Candidate division MSBL1 archaeon SCGC-AAA261C02 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA261C02 1698272 LHXW00000000.1 Bac0013083 Candidate division MSBL1 archaeon SCGC-AAA261D19 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA261D19 1698273 LHXX00000000.1 Bac0013084 Candidate division MSBL1 archaeon SCGC-AAA382M17 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA382M17 1698284 LHYI00000000.1 Bac0013085 Candidate division MSBL1 archaeon SCGC-AAA833K04 Methanobacteriati Methanobacteriota candidate division MSBL1 archaeon SCGC-AAA833K04 1698258 LHYN00000000.1 Bac0013086 Gluconobacter potus strain LMG 1764 LMG1764_1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter potus 2724927 LHZB00000000.1 Bac0013087 Acetobacter malorum strain LMG 1552 LMG1552_32 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter malorum 178901 LHZF00000000.1 Bac0013088 Gluconobacter japonicus strain A813 R-49117_37 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter japonicus 376620 LHZH00000000.1 Bac0013089 Acetobacter malorum strain LMG 1699 LMG1699_1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter malorum 178901 LHZX00000000.1 Bac0013090 Acetobacter cerevisiae strain LMG 1545 LMG1545_108 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter cerevisiae 178900 LIAA00000000.1 Bac0013091 OM182 bacterium BACL3 MAG-120619-bin3 Pseudomonadati Pseudomonadota Gammaproteobacteria OM182 bacterium BACL3 MAG-120619-bin3 1655593 LICD00000000.1 Bac0013092 Cryomorphaceae bacterium BACL7 MAG-121220-bin83 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Cryomorphaceae Cryomorphaceae bacterium BACL7 MAG-121220-bin83 1655595 LICF00000000.1 Bac0013093 Cryomorphaceae bacterium BACL29 MAG-121220-bin8 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Cryomorphaceae Cryomorphaceae bacterium BACL29 MAG-121220-bin8 1655598 LICI00000000.1 Bac0013094 Candidatus Bathyarchaeota archaeon BA2 ba2_52 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon BA2 1700836 LIHK00000000.1 Bac0013095 Pseudomonas amygdali pv. ulmi strain CFBP 1407 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 47877 LIHQ00000000.1 Bac0013096 Phaeobacter sp. 11ANDIMAR09 PM09_101 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter sp. 11ANDIMAR09 1225647 LIKT00000000.1 Bac0013097 Viridibacillus arvi strain DSM 16317 "Viridibacillus arvi strain DSM 16317 is a rod-shaped, spore-forming bacterium exhibiting characteristics typical of both Gram-negative and Gram-positive bacteria. This unique classification suggests a complex cell wall structure that may offer insights into its resilience and adaptability in various environments. As an anaerobic organism, V. arvi strain DSM 16317 thrives in oxygen-depleted conditions, potentially making it an important player in anaerobic ecosystems, such as those found in soil or within the digestive tracts of certain animals.↵↵The ability to form spores is particularly notable, as this trait enhances the bacterium's survival under challenging environmental conditions, allowing it to withstand extreme desiccation, heat, and nutrient scarcity. This sporulation capability may also facilitate its dispersal in habitats where resources are transient or limited.↵↵Given its anaerobic nature and spore-forming ability, Viridibacillus arvi strain DSM 16317 may occupy a niche that contributes to the cycling of nutrients in anaerobic environments. Its presence in such habitats could play a role in the degradation of organic matter and the potential biogeochemical processes, underscoring the importance of understanding this microbe in the context of ecological interactions and microbial community dynamics. Further research into its metabolic pathways and interactions within its ecosystem may reveal additional ecological functions that are yet to be explored." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Viridibacillus Viridibacillus arvi Gram-negative / Gram-positive rod anaerobic spore-forming 263475 LILB00000000.1 Bac0013098 Streptomyces sp. TSRI0445 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TSRI0445 1703925 LIPC00000000.1 Bac0013099 Streptomyces sp. CB02056 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02056 1703924 LIPD00000000.1 Bac0013100 Streptomyces sp. TSRI0395 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TSRI0395 1703923 LIPE00000000.1 Bac0013101 Streptomyces sp. CB02414 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02414 1703922 LIPF00000000.1 Bac0013102 Paenibacillus riograndensis strain CAS34 "Paenibacillus riograndensis strain CAS34 is a rod-shaped, spore-forming bacterium that exhibits a Gram-positive reaction. This strain demonstrates facultative anaerobic characteristics, allowing it to grow in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 29.0°C, which suggests a preference for mesophilic conditions.↵↵The ability to form spores is a notable adaptation that enables P. riograndensis strain CAS34 to survive in unfavorable environmental conditions, facilitating its persistence in various habitats. The combination of its rod shape and sporulation capability indicates that this strain may possess unique mechanisms for resilience and nutrient acquisition in fluctuating ecological niches.↵↵Given its facultative anaerobic nature and optimal growth temperature, P. riograndensis strain CAS34 may play a role in diverse biogeochemical cycles, particularly in environments where organic matter is decomposed. Its capacity for adapting to different oxygen levels could also allow it to participate in complex microbial communities, contributing to soil health and fertility. Overall, the traits of this strain suggest potential applications in biotechnology, particularly in processes that require microbial resilience and versatility." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus riograndensis Gram-negative / Gram-positive rod facultative aerobe/anaerobe 29 mesophilic spore-forming 483937 LIRB00000000.1 Bac0013103 Hapalosiphon sp. MRB220 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Hapalosiphon Hapalosiphon sp. MRB220 1704290 LIRN00000000.1 Bac0013104 Vibrio parahaemolyticus strain HS-22-14 "Vibrio parahaemolyticus strain HS-22-14 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is characterized by its nonsporulating nature. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is 20.0 °C, indicating a preference for cooler aquatic habitats, which aligns with its known ecological niche.↵↵As a heterotroph, V. parahaemolyticus strain HS-22-14 derives its energy from organic compounds, which it likely encounters in marine environments. This metabolic flexibility enables the strain to exploit various ecological niches in aquatic ecosystems, where it can play a role in the decomposition of organic matter and the cycling of nutrients. The ability to grow in diverse oxygen conditions further suggests that this strain can adapt to fluctuating environmental conditions often found in coastal and estuarine waters.↵↵Overall, the unique combination of traits exhibited by V. parahaemolyticus strain HS-22-14 highlights its potential ecological role in marine environments, particularly in nutrient cycling and the maintenance of microbial diversity within aquatic ecosystems. Understanding these traits may provide insights into its interactions with other microorganisms and its role in the broader ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 LIRV00000000.1 Bac0013105 Streptomyces sp. TSRI0261 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TSRI0261 1703931 LISY00000000.1 Bac0013106 Bacillus sp. FJAT-21351 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-21351 1581029 LITO00000000.1 Bac0013107 Bacillus sp. FJAT-18019 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-18019 1705110 LITP00000000.1 Bac0013108 Clostridium ljungdahlii strain ERI-2 "Clostridium ljungdahlii strain ERI-2 is a Gram-positive, rod-shaped bacterium that exhibits a unique cell arrangement, occurring in pairs and singles. This strain is characterized by its ability to sporulate, which enhances its survival in diverse environmental conditions. As a chemoorganotroph, C. ljungdahlii strain ERI-2 utilizes organic compounds as its energy source, allowing it to thrive in terrestrial habitats where organic matter is available. ↵↵Notably, this strain is aerobic, indicating that it requires oxygen for its metabolic processes. The combination of its morphological traits and metabolic capabilities suggests that C. ljungdahlii strain ERI-2 occupies a niche in terrestrial environments that may involve the decomposition of organic materials, contributing to nutrient cycling. This ecological role may be significant in maintaining soil health and fertility, as well as in biotechnological applications aimed at organic waste management." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium ljungdahlii Positive Rod Yes 1 1 Aerobic Chemoorganotroph Mesophilic Terrestrial Free living Pairs-Singles Sporulating 1538 LITT00000000.1 Bac0013109 Paenibacillus solani strain FJAT-22460 "Paenibacillus solani strain FJAT-22460 is a Gram-positive, rod-shaped bacterium known for its ability to form spores and thrive in aerobic environments. This strain exhibits optimal growth at a temperature of 29.0°C, indicating a preference for moderate thermal conditions. ↵↵The Gram-positive nature of P. solani strain FJAT-22460 suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environments, including potential soil habitats. The spore-forming capability is a significant trait, allowing this organism to endure unfavorable conditions by entering a dormant, resistant state. This trait is particularly beneficial for survival in fluctuating environmental conditions, where nutrients and moisture may be variable.↵↵Aerobic metabolism implies that P. solani strain FJAT-22460 requires oxygen for growth, which may influence its ecological niche and interactions with other microorganisms. Given its optimal temperature and aerobic nature, this strain might be well-suited to environments such as compost heaps or nutrient-rich soils where organic matter decomposition occurs.↵↵In summary, Paenibacillus solani strain FJAT-22460 exemplifies a resilient microbial entity capable of surviving and thriving in specific ecological niches, contributing potentially to nutrient cycling and soil health through its aerobic metabolic processes and spore-forming abilities." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus solani Gram-positive rod motile aerobic 29 mesophilic spore-forming 1705565 LIUT00000000.1 Bac0013110 Escherichia coli strain 304 "Escherichia coli strain 304 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments, where it exhibits a versatile lifestyle as a facultative anaerobe. This strain typically appears in pairs or as single cells, reflecting its cellular arrangement that may influence its interactions within the host. The optimal growth temperature for E. coli strain 304 is approximately 37.0°C, which aligns with the body temperature of warm-blooded hosts, suggesting its adaptation to a mammalian environment.↵↵The facultative anaerobic nature of this strain allows it to thrive in both aerobic and anaerobic conditions, providing metabolic flexibility that may enhance its survival in diverse host-associated niches. This adaptability could facilitate its role in various biological processes, including nutrient cycling within the host's gut microbiome.↵↵Given its characteristics, E. coli strain 304 may contribute to complex microbial interactions within the host, potentially influencing host health and disease dynamics. The specific ecological roles and interactions of this strain within the microbial community warrant further investigation, particularly in understanding its contributions to host metabolism and the maintenance of gut homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LIVI00000000.1 Bac0013111 Streptomyces sp. CB02488 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02488 1703920 LIVO00000000.1 Bac0013112 Streptomyces sp. MJM1172 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MJM1172 1703926 LIVP00000000.1 Bac0013113 Streptomyces sp. CB00455 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB00455 1703927 LIVQ00000000.1 Bac0013114 Micromonospora sp. TSRI0369 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. TSRI0369 1703936 LIVU00000000.1 Bac0013115 Streptomyces sp. CB02009 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02009 1703938 LIVV00000000.1 Bac0013116 Streptomyces sp. CB02115 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02115 1703939 LIVW00000000.1 Bac0013117 Streptomyces sp. CB02261 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02261 1703940 LIVX00000000.1 Bac0013118 Helicobacter pylori strain 22 "Helicobacter pylori strain 22 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, primarily found in the gastric environment of various hosts. ↵↵The microaerophilic nature of H. pylori strain 22 indicates that it requires lower levels of oxygen for growth than are typically found in the atmosphere, which is consistent with its adaptation to the oxygen-limited conditions of the stomach lining. This adaptation is significant for its survival and colonization within the host's gastric niche, where it can influence local microenvironments and potentially interact with the host's immune response.↵↵The unique morphology of H. pylori strain 22, as a spirilla, may assist in its motility within the viscous gastric mucus, enhancing its ability to reach and adhere to gastric epithelial cells. This characteristic, combined with its specific oxygen requirements and optimal growth temperature, underscores the bacterium's evolutionary adaptations to the gastrointestinal tract. Understanding these traits can provide insight into its ecological role in host-associated environments and its potential interactions with other microbiota present in the stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LIXF00000000.1 Bac0013119 Streptomyces sp. CB02130 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02130 1703934 LIXK00000000.1 Bac0013120 Lysinibacillus sp. FJAT-14222 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. FJAT-14222 1932366 LIYL00000000.1 Bac0013121 Deinococcus sp. UR1 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. UR1 1704277 LIYN00000000.2 Bac0013122 Loktanella sp. 3ANDIMAR09 PM07_034 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Loktanella Loktanella sp. 3ANDIMAR09 1225657 LJAK00000000.1 Bac0013123 Loktanella sp. 5RATIMAR09 PM08_043 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Loktanella Loktanella sp. 5RATIMAR09 1225655 LJAL00000000.1 Bac0013124 Candidatus Erwinia dacicola strain Oroville Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Candidatus Erwinia dacicola 252393 LJAM00000000.2 Bac0013125 Rothia kristinae strain RUTW2-3 "Rothia kristinae strain RUTW2-3 is a Gram-positive coccus that is part of the diverse microbiota found on human skin. As a member of the genus Rothia, this strain contributes to the complex ecosystem of cutaneous microorganisms, which play significant roles in maintaining skin health and homeostasis. The spherical shape of Rothia kristinae aligns with the morphological characteristics commonly observed in many skin-associated bacteria, which may facilitate its interaction with other microbial inhabitants and the host's immune system.↵↵The presence of this strain on the skin suggests its potential involvement in the intricate balance of microbial communities that protect against pathogenic organisms. While specific interactions of Rothia kristinae with the host or other microbial species are not detailed, its Gram-positive nature indicates a robust cell wall structure that may confer advantages in resisting environmental stresses encountered in the skin habitat.↵↵Moreover, the ability of Rothia kristinae to thrive in the skin microenvironment may reflect adaptation mechanisms that allow it to utilize skin-derived nutrients, thereby contributing to the overall metabolic activity of the skin microbiome. Understanding the role of strain RUTW2-3 within this context may provide insights into its potential contributions to skin health or its interactions within the larger microbial community. Further research could elucidate its specific functions and interactions, enhancing our understanding of the dynamics within skin microbiota." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia kristinae positive Coccus skin 37923 LJBJ00000000.2 Bac0013126 Acidiplasma aeolicum strain V Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Acidiplasma Acidiplasma aeolicum 507754 LJCQ00000000.1 Bac0013127 Actinobacteria bacterium OK074 Bacillati Actinomycetota Actinomycetes Actinobacteria bacterium OK074 1592327 LJCV00000000.1 Bac0013128 Lactobacillus crispatus strain VMC3 "Lactobacillus crispatus strain VMC3 is a Gram-positive, rod-shaped bacterium that typically forms chains and is characterized as a non-sporulating organism. This strain thrives optimally at a temperature of 37.0°C, which suggests its adaptation to warm-blooded hosts. As a facultative anaerobe, L. crispatus strain VMC3 can grow in both aerobic and anaerobic environments, allowing it to colonize various niches within host-associated ecosystems.↵↵This strain is primarily associated with the microbiota of the host, where it likely plays a significant role in maintaining microbial balance and contributing to host health. Lactobacillus species, including L. crispatus, are often recognized for their beneficial properties, such as the production of lactic acid, which can help inhibit the growth of pathogenic microorganisms and support the overall stability of the microbial community.↵↵The ability of L. crispatus strain VMC3 to exist in both oxygen-rich and oxygen-poor environments within host tissues may provide insights into its ecological versatility and functional contributions to host-associated microbiomes. Further exploration of this strain could enhance our understanding of its specific roles in health and disease, particularly in the context of human microbiota and potential applications in probiotic therapies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LJGP00000000.1 Bac0013129 Streptomyces abyssalis strain SCSIO 10390 C595 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces abyssalis aerobic 32 mesophilic spore-forming 933944 LJGT00000000.1 Bac0013130 Streptomyces qinglanensis strain SCSIO M10379 "Streptomyces qinglanensis strain SCSIO M10379 is an ovoid, spore-forming bacterium that demonstrates optimal growth at a temperature of 29.0°C. This strain belongs to the genus Streptomyces, which is renowned for its ability to produce a wide array of bioactive compounds, including antibiotics and enzymes, through its complex life cycle that includes both vegetative and reproductive phases.↵↵The ovoid shape of S. qinglanensis SCSIO M10379 is characteristic of certain members of the Streptomyces genus, which typically exhibit filamentous growth. The ability to form spores is a notable trait, allowing this strain to survive in various environmental conditions and contributing to its potential resilience in diverse ecological niches. ↵↵Understanding the optimal growth temperature of 29.0°C provides valuable insight into the environmental conditions preferred by this microbe, suggesting that it may thrive in warm, temperate habitats. The sporulation capability not only serves as a survival mechanism but may also play a role in its ecological interactions, such as competition with other microorganisms and adaptation to changing environments.↵↵As a member of the Streptomyces genus, S. qinglanensis SCSIO M10379 may participate in soil nutrient cycling and contribute to the decomposition of organic matter, thus influencing the microbial community structure and functioning in its native habitat. Further exploration of its metabolic pathways and secondary metabolites could reveal novel applications in biotechnology and medicine." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces qinglanensis ovoid 29 mesophilic spore-forming 943816 LJGV00000000.1 Bac0013131 Streptomyces nanshensis strain SCSIO 01066 C9231 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nanshensis 518642 LJGX00000000.1 Bac0013132 Streptomyces nanshensis strain SCSIO M10372 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nanshensis 518642 LJGZ00000000.1 Bac0013133 Epulopiscium sp. SCG-C07WGA-EpuloA2 SCGC07WGA_9 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Candidatus Epulonipiscioides Candidatus Epulonipiscioides gigas 1712379 LJHE00000000.1 Bac0013134 Alpha proteobacterium AAP81b Pseudomonadati Pseudomonadota Alphaproteobacteria alpha proteobacterium AAP81b 1523432 LJHX00000000.1 Bac0013135 Beta proteobacterium AAP99 Pseudomonadati Pseudomonadota Betaproteobacteria beta proteobacterium AAP99 1523428 LJIA00000000.1 Bac0013136 Rhizobium sp. AAP116 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. AAP116 1523429 LJIB00000000.1 Bac0013137 Psychrobacillus sp. FJAT-21963 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Psychrobacillus Psychrobacillus sp. FJAT-21963 1712028 LJIY00000000.1 Bac0013138 Brevibacillus choshinensis strain DSM 8552 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus choshinensis microaerophile 54911 LJJB00000000.1 Bac0013139 Heyndrickxia shackletonii strain LMG 18435 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia shackletonii 157838 LJJC00000000.1 Bac0013140 Methanomassiliicoccales archaeon RumEn M1 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccales archaeon RumEn M1 1713724 LJKK00000000.1 Bac0013141 Methanomassiliicoccales archaeon RumEn M2 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccales archaeon RumEn M2 1713725 LJKL00000000.1 Bac0013142 Aphanizomenon flos-aquae WA102 203497 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae 1176 LJOW00000000.1 Bac0013143 Pseudomonas amygdali pv. aesculi strain ICMP8947 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 47877 LJPN00000000.1 Bac0013144 Pseudomonas syringae pv. atrofaciens strain ICMP4394 "Pseudomonas syringae pv. atrofaciens strain ICMP4394 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds. As an aerobic organism, P. syringae pv. atrofaciens requires oxygen for its metabolic processes, which is consistent with its adaptability to various environments. ↵↵The habitat of this strain spans multiple ecological niches, suggesting a versatile lifestyle and potential interactions with a variety of substrates and organisms in its environment. The ability of Pseudomonas syringae species to thrive in diverse habitats underlines their ecological significance, particularly in soil and plant-associated ecosystems, where they may play roles in nutrient cycling and interactions with other microbial communities.↵↵Overall, the traits of Pseudomonas syringae pv. atrofaciens strain ICMP4394 reflect a well-adapted microorganism capable of exploiting various organic resources in oxygen-rich environments, thereby contributing to the complexity of microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 LJPO00000000.1 Bac0013145 Pseudomonas cannabina pv. alisalensis strain ICMP 15200 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cannabina 86840 LJPP00000000.1 Bac0013146 Pseudomonas syringae pv. apii strain ICMP2814 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251701 LJPR00000000.1 Bac0013147 Pseudomonas syringae pv. cunninghamiae strain ICMP11894 "Pseudomonas syringae pv. cunninghamiae strain ICMP11894 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy. It is an aerobic organism, requiring oxygen for its metabolic processes. P. syringae pv. cunninghamiae is found in a variety of habitats, which suggests a degree of ecological versatility that may allow it to thrive in diverse environmental conditions.↵↵The adaptability of this strain to multiple habitats underscores its potential role in various ecological niches, possibly influencing microbial community dynamics and nutrient cycling. Its presence across different environments may also indicate its ability to interact with other microorganisms and host organisms, contributing to complex ecological interactions. Further studies could elucidate the specific ecological roles and interactions of Pseudomonas syringae pv. cunninghamiae strain ICMP11894 within its habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 LJQE00000000.1 Bac0013148 Pseudomonas syringae pv. daphniphylli strain ICMP9757 "Pseudomonas syringae pv. daphniphylli strain ICMP9757 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds, which allows it to thrive in various habitats. As an aerobic organism, P. syringae pv. daphniphylli strain ICMP9757 requires oxygen for its metabolic processes, further influencing its ecological distribution and interactions within different environments.↵↵The versatility of P. syringae pv. daphniphylli strain ICMP9757 in utilizing a range of organic materials for energy supports its presence in multiple habitats, potentially contributing to its role in nutrient cycling. This adaptability suggests that the strain may play a significant part in the microbial community dynamics of its environments, reflecting the broader ecological implications of heterotrophic bacteria in maintaining ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 LJQF00000000.1 Bac0013149 Pseudomonas syringae pv. helianthi strain ICMP 4531 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7 251699 LJQM00000000.1 Bac0013150 Pseudomonas savastanoi pv. nerii strain ICMP16943 "Pseudomonas savastanoi pv. nerii strain ICMP16943 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells. This strain operates as a heterotroph, relying on organic compounds for its energy needs, and is classified as an aerobic organism, indicating it requires oxygen for optimal metabolic function. ↵↵Pseudomonas savastanoi pv. nerii is known to inhabit a variety of environments, which reflects its metabolic versatility and ability to adapt to different ecological niches. The presence of this strain in multiple habitats underscores its potential role in various biogeochemical processes, including nutrient cycling and organic matter degradation. ↵↵The ecological significance of Pseudomonas savastanoi pv. nerii strain ICMP16943 may extend beyond its metabolic capabilities, as its adaptability to different environments suggests it could contribute to microbial community dynamics and resilience in changing ecosystems. Further research could elucidate its interactions within these communities, potentially revealing important functions in maintaining ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 29438 LJQW00000000.1 Bac0013151 Pseudomonas amygdali pv. sesami strain ICMP763 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 47877 LJRG00000000.1 Bac0013152 Pseudomonas syringae pv. syringae strain ICMP3023 "Pseudomonas syringae pv. syringae strain ICMP3023 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells and exhibits aerobic metabolism, relying on organic compounds as a heterotrophic energy source. This strain is part of the diverse Pseudomonas genus, known for its versatility in utilizing various environmental habitats, which may include soil, water, and plant surfaces.↵↵As an aerobic organism, P. syringae pv. syringae strain ICMP3023 requires oxygen for growth and metabolism, positioning it within a specific ecological niche where oxygen is readily available. Its ability to thrive in multiple habitats highlights the adaptability of this strain, which can potentially play roles in nutrient cycling and interactions with other microorganisms in its environment.↵↵The presence of this bacterium in various habitats suggests that it may contribute to the biological dynamics of these ecosystems, possibly influencing plant health and microbial community structures. Further research into its environmental interactions could provide insights into its ecological roles, particularly in relation to its heterotrophic lifestyle in diverse settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 LJRK00000000.1 Bac0013153 Pseudomonas tremae strain ICMP9151 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tremae 200454 LJRO00000000.1 Bac0013154 Pseudomonas amygdali pv. ulmi strain ICMP3962 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 47877 LJRQ00000000.1 Bac0013155 Pseudomonas viridiflava strain ICMP2848 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viridiflava 33069 LJRS00000000.1 Bac0013156 Pseudomonas coronafaciens pv. zizaniae strain ICMP8921 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 53409 LJRT00000000.1 Bac0013157 Pseudomonas sp. 2822-17 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 2822-17 1792040 LJRZ00000000.1 Bac0013158 Pseudomonas sp. 2995-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 2995-1 1792042 LJSA00000000.1 Bac0013159 Pseudomonas sp. 2995-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 2995-3 1792044 LJSB00000000.1 Bac0013160 Streptomyces noursei strain JCM 4701 "Streptomyces noursei strain JCM 4701 is a Gram-positive bacterium renowned for its filamentous morphology and contribution to the production of bioactive compounds. This strain belongs to the genus Streptomyces, which is noted for its role in soil ecology and the natural production of antibiotics. The Gram-positive nature of S. noursei strain JCM 4701 indicates the presence of a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria and is crucial for maintaining cell integrity and shape.↵↵Streptomyces species, including S. noursei, are typically found in various terrestrial environments, particularly in soil, where they play a vital role in the degradation of organic matter. This ecological niche is facilitated by their ability to produce a wide array of enzymes that break down complex organic materials. The filamentous growth form of S. noursei is advantageous for nutrient absorption and contributes to its competitive fitness in natural habitats.↵↵Additionally, S. noursei strain JCM 4701 is of interest in biotechnology due to its potential for producing secondary metabolites, including antibiotics and other bioactive compounds, which can have significant applications in medicine and agriculture. Understanding the specific traits and metabolic capabilities of this strain can provide insights into its ecological roles and applications in bioprospecting for novel antimicrobial agents. Overall, the ecological significance of S. noursei reflects the intricate relationships within soil microbiomes and the potential for harnessing microbial diversity for various applications." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces noursei Positive 1971 LJSN00000000.1 Bac0013161 Pseudoalteromonas lipolytica strain UCD-48B Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas lipolytica 570156 LJTC00000000.1 Bac0013162 Cobetia sp. UCD-24C Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Cobetia Cobetia sp. UCD-24C 1716176 LJTD00000000.1 Bac0013163 Vibrio alginolyticus strain UCD-9C "Vibrio alginolyticus strain UCD-9C is a Gram-negative, facultative anaerobic bacterium that thrives in marine environments, exhibiting optimal growth at a temperature of 30.0 °C. This strain belongs to the Vibrio genus, which is characterized by its rod-shaped morphology and motility, typically attributed to a single polar flagellum. ↵↵As a member of the marine microbiota, V. alginolyticus strain UCD-9C is adapted to fluctuating environmental conditions, including varying levels of salinity and nutrient availability. Its facultative anaerobic nature allows it to utilize oxygen when available, while also being capable of fermentative metabolism in its absence. This metabolic flexibility is likely advantageous for survival in diverse marine habitats, where oxygen levels can vary significantly.↵↵The ecological role of V. alginolyticus strain UCD-9C may involve participation in nutrient cycling and decomposition processes within its marine ecosystem. The ability to thrive at a relatively moderate temperature suggests a potential adaptability to seasonal temperature fluctuations in coastal waters. Furthermore, the presence of this strain in marine environments highlights the importance of studying microbial diversity in these habitats, as such organisms can influence both local ecology and broader biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus negative Yes facultative anaerobe 30 Marine 663 LJTH00000000.1 Bac0013164 Bacteroides sp. SM23_62 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. SM23_62 1703352 LJUP00000000.1 Bac0013165 Anaerolineae bacterium SM23_84 WORSMTZ_325098 Bacillati Chloroflexota Anaerolineae Anaerolineae bacterium SM23_84 1703388 LJUZ00000000.1 Bac0013166 Acidithiobacillales bacterium SM1_46 Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillales bacterium SM1_46 1703384 LJVB00000000.1 Bac0013167 Pseudomonas fluorescens strain S613 "Pseudomonas fluorescens strain S613 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is an aerobic heterotroph, meaning it requires oxygen for growth and utilizes organic compounds for energy. It thrives optimally at a temperature of 25.0°C, indicating its adaptability to moderate environmental conditions.↵↵The versatility in habitat suggests that P. fluorescens strain S613 can occupy various ecological niches, potentially contributing to its role in soil and water environments. Its ability to metabolize diverse organic substrates may facilitate its involvement in nutrient cycling, particularly in decomposing organic matter. This metabolic flexibility and aerobic nature may also enhance its competitive advantage over other microbial species in oxygen-rich conditions.↵↵Understanding the physiological traits of Pseudomonas fluorescens strain S613 underscores its potential significance in bioremediation and agricultural applications, where its heterotrophic capabilities can be harnessed to degrade pollutants or improve soil health. The ecological insights derived from this strain highlight its function in maintaining ecosystem balance and its adaptability to various environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LJXB00000000.1 Bac0013168 Helicobacter pylori strain UM276R "Helicobacter pylori strain UM276R is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of its host, suggesting a close association with host environments. The habitat of H. pylori is strictly host-associated, indicating its reliance on specific biological niches within its hosts for survival and proliferation.↵↵The microaerophilic nature of H. pylori strain UM276R implies that it requires lower levels of oxygen for growth compared to atmospheric concentrations, a trait that aligns with its colonization of the gastric mucosa where oxygen levels are reduced. This adaptation may provide insights into its survival mechanisms in the harsh gastric environment, where it can evade the host's immune response and maintain its presence.↵↵Understanding the ecological role of H. pylori strain UM276R within its host can offer valuable perspectives on the dynamics of gastric microbiota and its potential impacts on gastrointestinal health. The unique shape and arrangement of this strain may also influence its interactions with host tissues and other microbial inhabitants, highlighting the complexity of microbial communities in host-associated habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LJXK00000000.2 Bac0013169 Algoriphagus marincola HL-49 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus marincola 1305737 LJXT00000000.1 Bac0013170 Bradyrhizobium manausense strain BR 3351 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium manausense 989370 LJYG00000000.1 Bac0013171 Bacillus subtilis strain B4122 "Bacillus subtilis strain B4122 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to endure unfavorable environmental conditions. This strain thrives optimally at a temperature of 25.0°C and demonstrates facultative anaerobic growth, indicating its capability to survive in both aerobic and anaerobic environments.↵↵Bacillus subtilis is commonly associated with various host organisms, suggesting its potential role in host-associated ecosystems. The sporulation process, a key feature of this strain, enables it to form endospores, which are highly resistant to extreme conditions, including desiccation and nutrient deprivation. This adaptability may provide ecological advantages, allowing B4122 to persist in a range of habitats and respond effectively to environmental stressors.↵↵The facultative nature of this strain implies versatility in metabolic pathways, facilitating its growth in diverse environments. Such metabolic flexibility could enable B. subtilis strain B4122 to play significant roles in nutrient cycling within host-associated habitats, potentially influencing microbial community dynamics and contributing to the overall health of the host organism. Understanding the specific interactions of this strain within its ecological niche may offer insights into its potential applications in biotechnology and agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 LJZV00000000.1 Bac0013172 Aliiroseovarius crassostreae strain CV919-312 "Aliiroseovarius crassostreae strain CV919-312 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 32.0°C. This species is a member of the broader Aliiroseovarius genus, which is characterized by its unique ecological niches and metabolic capabilities. The Gram-negative cell wall structure is indicative of its potential interactions with various environments, as it may influence its susceptibility to antibiotics and environmental stressors.↵↵The rod shape of strain CV919-312 suggests an adaptation to its ecological niche, potentially facilitating motility and nutrient acquisition in aquatic environments. Its optimal growth temperature aligns with typical marine conditions, which may suggest a role in the microbiome associated with marine organisms, particularly in relation to its close association with bivalves, as indicated by its name derived from ""crassostreae"" (oysters). ↵↵Understanding the specific growth conditions and characteristics of Aliiroseovarius crassostreae strain CV919-312 is crucial for exploring its ecological roles and possible applications in biotechnology or environmental microbiology. Further investigation into its metabolic pathways and interactions with host organisms could provide insights into its functional significance in marine ecosystems, particularly regarding nutrient cycling and symbiotic relationships." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Aliiroseovarius Aliiroseovarius crassostreae Gram-negative rod aerobic 32 mesophilic 154981 LKBA00000000.1 Bac0013173 Pseudoalteromonas sp. P1-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. P1-9 1710354 LKBD00000000.1 Bac0013174 Acidiplasma aeolicum strain VT Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Acidiplasma Acidiplasma aeolicum 507754 LKBG00000000.1 Bac0013175 Pseudomonas fluorescens strain GW456-L13 1 "Pseudomonas fluorescens strain GW456-L13 1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives in a variety of habitats, exhibiting a remarkable capacity to adapt to diverse environmental conditions. It is classified as an aerobic heterotroph, indicating that it requires oxygen for growth and utilizes organic compounds as its energy source. The optimal growth temperature for this strain is 25.0°C, suggesting a preference for moderate temperatures that often characterize various soil and water environments.↵↵Pseudomonas fluorescens species are well-known for their metabolic versatility, which allows them to degrade a wide range of organic materials. This trait may explain their widespread occurrence in different habitats, where they play significant roles in nutrient cycling and organic matter decomposition. Furthermore, the ability of this strain to thrive in various environments underscores its potential utility in bioremediation efforts, as it may help in the breakdown of pollutants in contaminated soils and water systems. Overall, the ecological implications of Pseudomonas fluorescens strain GW456-L13 1 highlight its adaptability and importance in maintaining ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LKBJ00000000.1 Bac0013176 Pseudomonas syringae pv. actinidiae ICMP 19497 "Pseudomonas syringae pv. actinidiae ICMP 19497 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain, a member of the Pseudomonas genus, is classified as a heterotroph, indicating that it relies on organic compounds for its energy and carbon sources. It is an aerobic organism, requiring oxygen for its metabolic processes, which positions it well to thrive in various environments where oxygen is available.↵↵The habitat of Pseudomonas syringae pv. actinidiae ICMP 19497 is noted to be diverse, suggesting a broad ecological adaptability that may allow it to inhabit different niches within its environment. Given its traits, this microbe may be indicative of ecological dynamics in its native habitats, potentially influencing the microbial community structure and nutrient cycling. Understanding its specific interactions within these habitats can provide insights into the ecological roles of similar Pseudomonas species in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 1208099 LKBQ00000000.1 Bac0013177 Pseudomonas sp. ICMP 460 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ICMP 460 1718917 LKBR00000000.1 Bac0013178 Candidatus Methanoperedens sp. BLZ1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens nitratireducens 1392998 LKCM00000000.1 Bac0013179 Pseudoalteromonas sp. P1-25 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. P1-25 1723758 LKDW00000000.1 Bac0013180 Variovorax boronicumulans strain PHE5-4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax boronicumulans 436515 LKDZ00000000.1 Bac0013181 Comamonas thiooxydans strain PHE2-6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas thiooxydans 363952 LKFB00000000.1 Bac0013182 Lacticaseibacillus paracasei strain FAM18126 "Lacticaseibacillus paracasei strain FAM18126 is a Gram-positive, rod-shaped bacterium that typically exhibits a chain-like arrangement. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 30.0°C, suggesting a preference for moderate thermal conditions, which is consistent with the growth characteristics of many lactic acid bacteria.↵↵The habitat of Lacticaseibacillus paracasei strain FAM18126 spans multiple environments, reflecting its versatility and adaptability. This trait may contribute to its potential utility in various applications, including food fermentation and probiotic formulations. The ability to grow in diverse conditions implies a resilience that could be advantageous in fluctuating ecological niches.↵↵An intriguing aspect of Lacticaseibacillus paracasei strain FAM18126 is its potential role in the microbiome of fermented products, where it may contribute to the sensory and nutritional qualities of the final product while possibly influencing the overall microbial community dynamics. This insight highlights the significance of Lacticaseibacillus paracasei strain FAM18126 not only as a single microbial entity but also as a component of broader ecological interactions within its habitats." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 LKFN00000000.1 Bac0013183 Lacticaseibacillus paracasei strain FAM18149 "Lacticaseibacillus paracasei strain FAM18149 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 30.0°C, which suggests a preference for mesophilic conditions. ↵↵Lacticaseibacillus paracasei is known to inhabit a variety of ecological niches, highlighting its versatile nature and potential adaptability to diverse environments. This adaptability is particularly significant, as it may contribute to its ability to interact with various substrates and organisms within its habitat. The strain's facultative anaerobic capability suggests it can efficiently utilize available oxygen when present, but can also switch to fermentation processes under anaerobic conditions. ↵↵This metabolic flexibility may play a role in its ecological interactions, particularly in environments where oxygen levels fluctuate. As such, Lacticaseibacillus paracasei strain FAM18149 could be involved in complex microbial communities, potentially influencing nutrient cycling and the overall dynamics of microbial ecosystems. Its resilience in varying conditions may also have implications for its application in fermentation processes and probiotic formulations." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 LKFR00000000.1 Bac0013184 Lacticaseibacillus paracasei strain FAM18172 "Lacticaseibacillus paracasei strain FAM18172 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth for L. paracasei strain FAM18172 occurs at 30.0°C, suggesting a preference for moderate temperature conditions, which is consistent with many lactic acid bacteria.↵↵The habitat of L. paracasei strain FAM18172 is noted to be diverse, allowing it to inhabit multiple ecological niches. This versatility in habitat may contribute to its functional roles in various environments, potentially including fermented food products, where it may play a part in the fermentation process and contribute to flavor development. The chain arrangement of cells may provide advantages in colonization and biofilm formation, which can enhance its survival in competitive microbial communities.↵↵Overall, the physiological traits of Lacticaseibacillus paracasei strain FAM18172 highlight its adaptability and potential significance in diverse ecological contexts, particularly in relation to its role in fermentation processes and interactions within microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 LKFU00000000.1 Bac0013185 Pseudomonas sp. ICMP 10191 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ICMP 10191 1198294 LKGW00000000.1 Bac0013186 Pseudomonas marginalis ICMP 11289 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marginalis 1198318 LKGX00000000.1 Bac0013187 Pseudomonas marginalis ICMP 9505 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marginalis 1198317 LKGY00000000.1 Bac0013188 Vibrio furnissii strain S0821 "Vibrio furnissii strain S0821 is a Gram-positive bacterium that inhabits marine environments and exhibits facultative anaerobic respiration. This strain, belonging to the genus Vibrio, is characterized by its ability to thrive in the presence or absence of oxygen, making it adaptable to varying oxygen conditions in its marine habitat. ↵↵Being Gram-positive, V. furnissii strain S0821 possesses a thick peptidoglycan layer in its cell wall, which can influence its staining properties and potentially its interactions with other microorganisms in the marine ecosystem. The marine habitat of this strain suggests that it may play a role in the biogeochemical cycling of nutrients within oceanic systems, possibly contributing to the degradation of organic matter or influencing microbial community dynamics.↵↵The facultative anaerobic nature of this strain indicates that it can utilize both aerobic respiration when oxygen is available and fermentation or anaerobic respiration when oxygen levels are low. This metabolic versatility allows V. furnissii strain S0821 to occupy ecological niches that may be inhospitable to strictly aerobic or anaerobic organisms. ↵↵Overall, the adaptability of V. furnissii strain S0821 to varying oxygen levels in a marine environment underscores its potential significance in microbial ecology and nutrient cycling in oceanic ecosystems. Further investigation may reveal its specific interactions with other marine microorganisms and its contributions to the overall health and stability of marine habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio furnissii Positive Facultative anaerobe Marine Human 29494 LKHS00000000.1 Bac0013189 Aeromonas allosaccharophila strain TTU2014-159ASC Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas allosaccharophila 656 LKKI00000000.1 Bac0013190 Pseudomonas sp. TTU2014-105ASC Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. TTU2014-105ASC 1729726 LKKM00000000.1 Bac0013191 Methylobacterium sp. GXS13 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. GXS13 1730094 LKKO00000000.1 Bac0013192 Pseudomonas putida strain HB13667 "Pseudomonas putida strain HB13667 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a nonsporulating, facultative heterotroph, capable of utilizing various organic compounds as energy sources. It predominantly inhab soil and wastewater environments, which may reflect its adaptability to diverse ecological niches.↵↵The facultative anaerobic nature of Pseudomonas putida strain HB13667 suggests that it can thrive in both aerobic and microaerophilic conditions, providing it with a competitive advantage in environments where oxygen levels fluctuate. Its ability to metabolize a range of organic substrates indicates its potential role in bioremediation processes, particularly in contaminated soils and wastewater treatment systems.↵↵Notably, the presence of this strain in wastewater habitats highlights its significance in the degradation of pollutants, thereby contributing to the biogeochemical cycling of nutrients in these ecosystems. The strain's inherent metabolic versatility may also enable it to participate in complex microbial communities, facilitating interactions that enhance the overall ecological function of the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 LKKS00000000.1 Bac0013193 Flavobacteriaceae bacterium FS1-H7996/R Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium FS1-H7996/R 1721092 LKLA00000000.1 Bac0013194 Lysinibacillus sp. ZYM-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. ZYM-1 1681184 LKPY00000000.1 Bac0013195 Mycobacterium gordonae strain CTRI 14-8773 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium gordonae biofilms; Fresh water; laboratory faucets; pipelines; soil; water in the humidifier reservoir; well water 1778 LKTM00000000.1 Bac0013196 Variovorax paradoxus strain H061 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus 34073 LKTU00000000.1 Bac0013197 Variovorax paradoxus strain H112 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus 34073 LKTZ00000000.1 Bac0013198 Candidatus Cloacimonas sp. SDB Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonadia Candidatus Cloacimonadales Candidatus Cloacimonadaceae Candidatus Cloacimonas Candidatus Cloacimonas sp. SDB 1732214 LKUH00000000.1 Bac0013199 Bifidobacterium longum strain 379 "Bifidobacterium longum strain 379 is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in clusters, pairs, or as single cells. This strain is anaerobic, thriving in environments devoid of oxygen, and demonstrates an optimal growth temperature of 37.0 °C, which aligns with the typical conditions found within the mammalian gastrointestinal tract where it is predominantly associated. ↵↵As a member of the Bifidobacteriaceae family, B. longum strain 379 is known to inhabit the intestines of various host species, contributing to gut homeostasis and the maintenance of a balanced microbiota. Its presence in the host-associated habitat suggests a symbiotic relationship, potentially aiding in digestion and the synthesis of essential nutrients. ↵↵The nonsporulating nature of this strain indicates that it does not form spores as a means of survival, which is a characteristic that could influence its ecological niche and interactions within the gut microbiome. Given its anaerobic requirement, B. longum strain 379 is likely to play a significant role in fermentative processes within the gut, contributing to the production of short-chain fatty acids (SCFAs) that are beneficial to host health. ↵↵Understanding the specific traits of Bifidobacterium longum strain 379 provides insights into its ecological role and potential health benefits in maintaining gut health and contributing to host metabolism, highlighting the intricate relationships between host and microbial communities in the gastrointestinal ecosystem." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 LKUQ00000000.1 Bac0013200 Bifidobacterium bifidum strain 791 "Bifidobacterium bifidum strain 791 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. This strain is part of the Bifidobacterium genus, which is notable for its role in the gut microbiota of mammals, particularly in human infants where it contributes to the establishment of a healthy microbiome. ↵↵As an anaerobe, B. bifidum strain 791 utilizes fermentation to derive energy, which is characteristic of many gut-associated microbes. Its presence in the gastrointestinal tract is significant for various metabolic processes, including the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut health and overall well-being.↵↵The host-associated habitat of B. bifidum strain 791 suggests that it may play a crucial role in the digestion of complex carbohydrates and the modulation of the immune system within the host. Its ability to thrive in anaerobic conditions underscores its adaptation to the gut environment, where oxygen levels are minimal. ↵↵Overall, Bifidobacterium bifidum strain 791 exemplifies the complexity of host-microbe interactions and highlights the importance of anaerobic bacteria in maintaining gut homeostasis and contributing to the overall health of the host organism." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 LKUR00000000.1 Bac0013201 Butyribacter intestini strain TF01-11 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyribacter Butyribacter intestini 1703332 LLKB00000000.1 Bac0013202 Geobacillus sp. Sah69 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. Sah69 1737624 LLKS00000000.1 Bac0013203 Schaalia odontolytica strain XH001 "Schaalia odontolytica strain XH001 is a Gram-positive, filamentous bacterium that thrives in the host gut, exhibiting chemoheterotrophic metabolic capabilities. This strain has a temperature preference of 37.0°C, which corresponds to the typical physiological conditions found within mammalian hosts. As a facultative anaerobe, S. odontolytica strain XH001 can adapt to varying oxygen levels, allowing it to survive in both aerobic and anaerobic environments within the gut microbiome.↵↵The nonsporulating nature of this strain suggests a reliance on stable environmental conditions for survival and reproduction, rather than a capacity for enduring extreme stressors through sporulation. This trait may influence its ecological role within the gut, where it likely interacts with other microbial communities and contributes to the complex ecosystem of the intestinal microbiota.↵↵Given its filamentous morphology and specific habitat, S. odontolytica strain XH001 may play a significant role in the degradation of complex organic materials within the gut, potentially aiding in nutrient absorption and influencing host health. Further studies could illuminate its specific interactions with host organisms and other gut microbiota, which may contribute to our understanding of microbial dynamics in gastrointestinal environments." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia odontolytica Positive Filamentous No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 1660 LLVT00000000.1 Bac0013204 Pseudomonas endophytica strain BSTT44 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas endophytica 1563157 LLWH00000000.1 Bac0013205 Flavobacterium sp. TAB 87 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. TAB 87 1729581 LLWK00000000.1 Bac0013206 Stenotrophomonas panacihumi strain JCM 16536 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas panacihumi 676599 LLXU00000000.1 Bac0013207 Stenotrophomonas beteli strain LMG 978 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas beteli 3384461 LLXV00000000.1 Bac0013208 Bradyrhizobium valentinum strain LmjM3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium valentinum 1518501 LLXX00000000.1 Bac0013209 Bradyrhizobium jicamae strain PAC68 "Bradyrhizobium jicamae strain PAC68 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0°C. This strain belongs to the genus Bradyrhizobium, which is known for its role in symbiotic nitrogen fixation in leguminous plants. The Gram-negative nature of B. jicamae strain PAC68 suggests that it possesses a characteristic outer membrane containing lipopolysaccharides, contributing to its environmental adaptability and potential interactions with plant hosts.↵↵The rod shape of B. jicamae strain PAC68 is typical of bacteria in the Rhizobium group, which generally facilitates motility and colonization in various ecological niches. While specific details regarding its interactions with host plants or its precise ecological role are not provided, the optimal growth temperature of 29.0°C indicates that this strain is likely adapted to warm environments, which may reflect its potential distribution in regions where such temperatures prevail.↵↵Further research into the ecological interactions of B. jicamae strain PAC68 could reveal insights into its symbiotic relationships and contributions to soil fertility through nitrogen fixation. Understanding these relationships could enhance agricultural practices, particularly in areas where jicama (Pachyrhizus erosus), the host plant associated with this strain, is cultivated, thereby promoting sustainable agricultural systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium jicamae Gram-negative rod 29 mesophilic 280332 LLXZ00000000.1 Bac0013210 Bradyrhizobium retamae strain Ro19 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium retamae 1300035 LLYA00000000.1 Bac0013211 Thermococcus celericrescens strain DSM 17994 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus celericrescens 227598 LLYW00000000.1 Bac0013212 Chryseobacterium aquaticum strain KCTC 12483 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium aquaticum 452084 LLYZ00000000.1 Bac0013213 Streptomyces violaceusniger strain NRRL F-8817 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces violaceusniger 29 mesophilic spore-forming 68280 LLZJ00000000.1 Bac0013214 Streptomyces albidoflavus strain NRRL WC-3066 "Streptomyces albidoflavus strain NRRL WC-3066 is a Gram-positive bacterium well-documented for its filamentous growth form typical of the Streptomyces genus. This strain is characterized by its ability to produce a range of secondary metabolites, which may contribute to its ecological role in soil environments. Streptomyces species are notable for their diverse metabolic capabilities and their involvement in the natural decomposition processes, playing a crucial role in nutrient cycling.↵↵The Gram-positive nature of S. albidoflavus indicates a thick peptidoglycan layer in its cell wall, which is a common feature among many soil-dwelling actinobacteria and is associated with their resilience in various environmental conditions. This structural attribute may also contribute to the strain's ability to withstand desiccation and other stressors in its habitat.↵↵Moreover, Streptomyces species, including S. albidoflavus, are well-known for their significance in biotechnology, particularly in the production of antibiotics and other bioactive compounds. The unique metabolic pathways present in this strain could provide insights into novel antimicrobial agents, underscoring its potential utility in pharmaceutical applications.↵↵Overall, the ecological role of Streptomyces albidoflavus strain NRRL WC-3066 extends beyond its taxonomic classification; its filamentous structure and metabolic diversity reflect its adaptation to complex soil ecosystems, positioning it as a key player in microbial interactions and biogeochemical cycles." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 LLZL00000000.1 Bac0013215 Chlorobi bacterium OLB5 Pseudomonadati Ignavibacteriota Ignavibacteria Candidatus Tepidiaquacellales Candidatus Tepidiaquacellales bacterium OLB5 1617412 LLZO00000000.1 Bac0013216 Chlorobi bacterium OLB6 Pseudomonadati Chlorobiota Chlorobi bacterium OLB6 1617413 LLZP00000000.1 Bac0013217 Novosphingobium sp. FSW06-99 PRJNA299315_c052 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. FSW06-99 1739113 LLZQ00000000.1 Bac0013218 Novosphingobium sp. Fuku2-ISO-50 PRJNA299316_c054 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. Fuku2-ISO-50 1739114 LLZR00000000.1 Bac0013219 Wenjunlia vitaminophila strain ATCC 31673 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Wenjunlia Wenjunlia vitaminophila 76728 LLZU00000000.1 Bac0013220 Chryseobacterium sp. JAH Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. JAH 1742858 LMAH00000000.1 Bac0013221 Chryseobacterium aquaticum subsp. greenlandense strain UMB34 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium aquaticum 452084 LMAI00000000.1 Bac0013222 Flavobacteriaceae bacterium CRH Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium CRH 1742859 LMAJ00000000.1 Bac0013223 Halopseudomonas gallaeciensis strain V113 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas abyssi 170540 LMAZ00000000.1 Bac0013224 Pseudovibrio axinellae strain Ad2 "Pseudovibrio axinellae strain Ad2 is a Gram-negative, rod-shaped bacterium that exhibits strict anaerobic growth, thriving optimally at a temperature of 25.0°C. This strain belongs to the genus Pseudovibrio, which is known for its association with marine environments, particularly sponges. The anaerobic nature of P. axinellae strain Ad2 suggests a specialized adaptation to oxygen-limited niches, which may be prevalent in the sponge microbiomes where it is likely found.↵↵The rod shape of P. axinellae strain Ad2 may contribute to its motility and interaction with its environment, potentially influencing its role in nutrient cycling within its habitat. As an anaerobic organism, it likely participates in processes such as fermentation and the degradation of organic materials in low-oxygen conditions, which are crucial for maintaining the balance of microbial communities in marine ecosystems. ↵↵The optimal growth temperature of 25.0°C indicates that Pseudovibrio axinellae strain Ad2 is well-suited to temperate marine environments, where such temperatures are commonly encountered. Understanding the specific metabolic pathways and ecological roles of this bacterium in marine habitats may provide insights into the complex interactions between sponges and their associated microbial communities, highlighting the importance of anaerobic microbes in marine biodiversity and ecosystem health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Pseudovibrio Pseudovibrio axinellae Gram-negative rod anaerobic 25 mesophilic 989403 LMCB00000000.1 Bac0013225 Aminobacter sp. DSM 101952 strain Root100 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aminobacter Aminobacter sp. DSM 101952 2735891 LMCL00000000.1 Bac0013226 Mesorhizobium sp. Root102 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Root102 1736422 LMCP00000000.1 Bac0013227 Rhizobium sp. Root1203 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root1203 1736427 LMCW00000000.1 Bac0013228 Massilia sp. Root335 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. Root335 1736517 LMCY00000000.1 Bac0013229 Rhizobium sp. Root1204 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root1204 1736428 LMCZ00000000.1 Bac0013230 Caulobacter sp. Root342 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. Root342 1736519 LMDD00000000.1 Bac0013231 Caulobacter sp. Root343 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. Root343 1736520 LMDF00000000.1 Bac0013232 Rhizobium sp. Root1220 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root1220 1736432 LMDG00000000.1 Bac0013233 Rhizobacter sp. Root1221 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Rhizobacter Rhizobacter sp. Root1221 1736433 LMDI00000000.1 Bac0013234 Pelomonas sp. Root1237 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Pelomonas sp. Root1237 1736434 LMDK00000000.1 Bac0013235 Rhizobium sp. Root1240 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root1240 1736437 LMDR00000000.1 Bac0013236 Devosia sp. Root413D1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. Root413D1 1736531 LMEA00000000.1 Bac0013237 Leifsonia sp. Root1293 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Root1293 1736446 LMEH00000000.1 Bac0013238 Streptomyces sp. Root1295 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Root1295 1736448 LMEL00000000.1 Bac0013239 Paenibacillus sp. Root444D2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Root444D2 1736538 LMEO00000000.1 Bac0013240 Streptomyces sp. Root1304 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Root1304 1736450 LMEP00000000.1 Bac0013241 Angustibacter sp. Root456 Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Angustibacter Angustibacter sp. Root456 1736539 LMER00000000.1 Bac0013242 Variovorax sp. Root473 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. Root473 1736541 LMEV00000000.1 Bac0013243 Mycobacterium sp. Root135 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. Root135 1736457 LMEZ00000000.1 Bac0013244 Rhizobium sp. Root483D2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root483D2 1736545 LMFB00000000.1 Bac0013245 Cellulomonas sp. Root485 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. Root485 1736546 LMFC00000000.1 Bac0013246 Nocardia sp. Root136 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. Root136 1736458 LMFE00000000.1 Bac0013247 Lysobacter sp. Root494 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. Root494 1736549 LMFH00000000.1 Bac0013248 Paenibacillus sp. Root52 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Root52 1736552 LMFO00000000.1 Bac0013249 Pelomonas sp. Root1444 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Pelomonas sp. Root1444 1736464 LMFP00000000.1 Bac0013250 Caulobacter sp. Root1455 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. Root1455 1736465 LMFQ00000000.1 Bac0013251 Microbacterium sp. Root53 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Root53 1736553 LMFR00000000.1 Bac0013252 Caulobacter sp. Root1472 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. Root1472 1736470 LMFX00000000.1 Bac0013253 Microbacterium sp. Root553 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Root553 1736556 LMFY00000000.1 Bac0013254 Massilia sp. Root1485 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. Root1485 1736472 LMGB00000000.1 Bac0013255 Rhizobium sp. Root149 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root149 1736473 LMGD00000000.1 Bac0013256 Nocardioides sp. Root151 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Root151 1736475 LMGG00000000.1 Bac0013257 Rhizobium sp. Root564 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Root564 1736563 LMGN00000000.1 Bac0013258 Leifsonia sp. Root60 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Root60 1736567 LMGR00000000.1 Bac0013259 Rhodanobacter sp. Root627 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. Root627 1736572 LMGW00000000.1 Bac0013260 Caulobacter sp. Root656 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter sp. Root656 1736579 LMHD00000000.1 Bac0013261 Pseudomonas sp. Root68 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Root68 1736585 LMHI00000000.1 Bac0013262 Rhodanobacter sp. Root179 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. Root179 1736482 LMHR00000000.1 Bac0013263 Pseudomonas sp. Root71 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Root71 1736593 LMHY00000000.1 Bac0013264 Nocardioides sp. Root190 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Root190 1736488 LMIA00000000.1 Bac0013265 Phenylobacterium sp. Root77 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium sp. Root77 1736599 LMIM00000000.1 Bac0013266 Nocardioides sp. Root240 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Root240 1736500 LMIT00000000.1 Bac0013267 Achromobacter sp. Root83 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter sp. Root83 1736602 LMIU00000000.1 Bac0013268 Flavobacterium sp. Root901 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Root901 1736605 LMJB00000000.1 Bac0013269 Acidovorax sp. Root275 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. Root275 1736508 LMJH00000000.1 Bac0013270 Ensifer sp. Root278 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. Root278 1736509 LMJJ00000000.1 Bac0013271 Microbacterium sp. Root280D1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Root280D1 1736510 LMJK00000000.1 Bac0013272 Lysobacter sp. Root96 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. Root96 1736612 LMJN00000000.1 Bac0013273 Bacillus sp. Root239 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Root239 1736499 LMJS00000000.1 Bac0013274 Bosea sp. Root483D1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. Root483D1 1736544 LMJW00000000.1 Bac0013275 Chryseobacterium sp. Leaf201 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. Leaf201 1735672 LMKA00000000.1 Bac0013276 Sphingomonas sp. Leaf10 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf10 1735676 LMKE00000000.1 Bac0013277 Microbacterium sp. Leaf203 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Leaf203 1735677 LMKF00000000.1 Bac0013278 Pseudomonas sp. Leaf15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Leaf15 1735680 LMKI00000000.1 Bac0013279 Agreia sp. Leaf210 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agreia Agreia sp. Leaf210 1735682 LMKK00000000.1 Bac0013280 Sphingomonas sp. Leaf17 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf17 1735683 LMKL00000000.1 Bac0013281 Sphingomonas sp. Leaf22 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf22 1735687 LMKP00000000.1 Bac0013282 Sphingomonas sp. Leaf28 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf28 1735695 LMKX00000000.1 Bac0013283 Sphingomonas sp. Leaf29 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf29 1736212 LMKY00000000.1 Bac0013284 Sphingomonas sp. Leaf30 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf30 1736213 LMKZ00000000.1 Bac0013285 Sphingomonas sp. Leaf32 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf32 1736214 LMLA00000000.1 Bac0013286 Sphingomonas sp. Leaf38 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf38 1736217 LMLD00000000.1 Bac0013287 Pedobacter sp. Leaf41 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. Leaf41 1736218 LMLE00000000.1 Bac0013288 Frigoribacterium sp. Leaf44 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. Leaf44 1736220 LMLG00000000.1 Bac0013289 Pseudomonas sp. Leaf48 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Leaf48 1736221 LMLH00000000.1 Bac0013290 Serratia sp. Leaf51 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. Leaf51 1736224 LMLJ00000000.1 Bac0013291 Devosia sp. Leaf64 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. Leaf64 1736229 LMLO00000000.1 Bac0013292 Sphingomonas sp. Leaf67 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf67 1736230 LMLP00000000.1 Bac0013293 Paenibacillus sp. Leaf72 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Leaf72 1736234 LMLV00000000.1 Bac0013294 Acidovorax sp. Leaf76 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. Leaf76 1736236 LMLY00000000.1 Bac0013295 Acidovorax sp. Leaf78 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. Leaf78 1736237 LMLZ00000000.1 Bac0013296 Flavobacterium sp. Leaf82 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Leaf82 1736238 LMMA00000000.1 Bac0013297 Methylobacterium sp. Leaf86 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf86 1736242 LMMG00000000.1 Bac0013298 Methylobacterium sp. Leaf90 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf90 1736246 LMMN00000000.1 Bac0013299 Leifsonia sp. Leaf264 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Leaf264 1736314 LMMR00000000.1 Bac0013300 Pseudorhodoferax sp. Leaf265 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Pseudorhodoferax Pseudorhodoferax sp. Leaf265 1736315 LMMT00000000.1 Bac0013301 Pseudorhodoferax sp. Leaf267 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Pseudorhodoferax Pseudorhodoferax sp. Leaf267 1736316 LMMV00000000.1 Bac0013302 Methylobacterium sp. Leaf111 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf111 1736257 LMNE00000000.1 Bac0013303 Methylobacterium sp. Leaf112 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. Leaf112 1736258 LMNG00000000.1 Bac0013304 Nocardioides sp. Leaf285 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Leaf285 1736322 LMNH00000000.1 Bac0013305 Rathayibacter sp. Leaf294 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. Leaf294 1736326 LMNO00000000.1 Bac0013306 Frondihabitans sp. Leaf304 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frondihabitans Frondihabitans sp. Leaf304 1736329 LMNV00000000.1 Bac0013307 Duganella sp. Leaf126 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. Leaf126 1736266 LMNW00000000.1 Bac0013308 Rhizobium sp. Leaf306 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Leaf306 1736330 LMNX00000000.1 Bac0013309 Pseudomonas sp. Leaf127 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Leaf127 1736267 LMOA00000000.1 Bac0013310 Arthrobacter sp. Leaf137 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Leaf137 1736271 LMOI00000000.1 Bac0013311 Leifsonia sp. Leaf325 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Leaf325 1736337 LMOK00000000.1 Bac0013312 Deinococcus sp. Leaf326 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. Leaf326 1736338 LMOM00000000.1 Bac0013313 Microbacterium sp. Leaf151 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Leaf151 1736276 LMOR00000000.1 Bac0013314 Curtobacterium sp. Leaf154 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. Leaf154 1736277 LMOS00000000.1 Bac0013315 Microbacterium sp. Leaf161 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Leaf161 1736281 LMOW00000000.1 Bac0013316 Brevundimonas sp. Leaf168 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. Leaf168 1736283 LMOY00000000.1 Bac0013317 Leifsonia sp. Leaf336 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. Leaf336 1736341 LMOZ00000000.1 Bac0013318 Chryseobacterium sp. Leaf180 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. Leaf180 1736289 LMPJ00000000.1 Bac0013319 Sphingomonas sp. Leaf357 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf357 1736350 LMPM00000000.1 Bac0013320 Flavobacterium sp. Leaf359 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Leaf359 1736351 LMPW00000000.1 Bac0013321 Brevundimonas sp. Leaf363 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. Leaf363 1736353 LMPZ00000000.1 Bac0013322 Geodermatophilus sp. Leaf369 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus sp. Leaf369 1736354 LMQA00000000.1 Bac0013323 Rhizobium sp. Leaf371 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. Leaf371 1736355 LMQB00000000.1 Bac0013324 Cellulomonas sp. Leaf395 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. Leaf395 1736362 LMQI00000000.1 Bac0013325 Sphingomonas sp. Leaf407 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf407 1736369 LMQO00000000.1 Bac0013326 Sphingomonas sp. Leaf412 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Leaf412 1736370 LMQP00000000.1 Bac0013327 Aureimonas sp. Leaf454 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas sp. Leaf454 1736381 LMQT00000000.1 Bac0013328 Aureimonas sp. Leaf427 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas sp. Leaf427 1736375 LMQW00000000.1 Bac0013329 Aureimonas sp. Leaf460 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas sp. Leaf460 1736384 LMQY00000000.1 Bac0013330 Aurantimonas sp. Leaf443 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aurantimonas Aurantimonas sp. Leaf443 1736378 LMRD00000000.1 Bac0013331 Sanguibacter sp. Leaf3 Bacillati Actinomycetota Actinomycetes Micrococcales Sanguibacteraceae Sanguibacter Sanguibacter sp. Leaf3 1736209 LMRH00000000.1 Bac0013332 Bacillus sp. Leaf13 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Leaf13 1736211 LMRJ00000000.1 Bac0013333 Bacillus sp. Leaf75 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Leaf75 1736235 LMRL00000000.1 Bac0013334 Rhodococcus sp. Leaf258 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. Leaf258 1736310 LMRQ00000000.1 Bac0013335 Paenibacillus sp. Soil724D2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Soil724D2 1736392 LMRY00000000.1 Bac0013336 Paenibacillus sp. Soil750 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Soil750 1736398 LMSD00000000.1 Bac0013337 Nostocoides sp. Soil756 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Nostocoides Nostocoides sp. Soil756 1736399 LMSE00000000.1 Bac0013338 Arthrobacter sp. Soil763 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Soil763 1736402 LMSH00000000.1 Bac0013339 Rhodanobacter sp. Soil772 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. Soil772 1736406 LMSK00000000.1 Bac0013340 Frateuria sp. Soil773 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Frateuria Frateuria sp. Soil773 1736407 LMSL00000000.1 Bac0013341 Paenibacillus sp. Soil787 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Soil787 1736411 LMSP00000000.1 Bac0013342 Nocardioides sp. Soil797 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. Soil797 1736413 LMSR00000000.1 Bac0013343 Phycicoccus sp. Soil803 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Phycicoccus Phycicoccus sp. Soil803 1736415 LMST00000000.1 Bac0013344 Mastigocoleus testarum BC008 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Mastigocoleus Mastigocoleus testarum 371196 LMTZ00000000.1 Bac0013345 Agrobacterium vitis strain NCPPB 3554 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Gillisella Gillisella vitis 373 LMVL00000000.2 Bac0013346 Streptomyces rimosus subsp. rimosus strain NRRL WC-3897 "Streptomyces rimosus subsp. rimosus strain NRRL WC-3897 is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its significance in natural product biosynthesis. This strain is primarily isolated from soil habitats, where it likely plays a key role in nutrient cycling and organic matter decomposition. As a member of the Streptomycetaceae family, S. rimosus subsp. rimosus has been studied for its ability to produce a variety of secondary metabolites, including antibiotics, which contribute to its ecological interactions.↵↵The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, a characteristic that may enhance its resilience in terrestrial environments. Its soil habitat suggests that it is adapted to complex microbial communities, engaging in symbiotic and competitive relationships with other microorganisms. The metabolic versatility of Streptomyces species, combined with their potential for producing bioactive compounds, underscores their ecological significance as both decomposers and as biocontrol agents in agricultural settings.↵↵Overall, the ecological role of Streptomyces rimosus subsp. rimosus strain NRRL WC-3897 in soil ecosystems illustrates the importance of soil-dwelling microbes in maintaining soil health and fertility, highlighting their potential applications in sustainable agriculture and biotechnology." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rimosus Positive soil 1927 LMWF00000000.1 Bac0013347 Streptomyces pseudovenezuelae strain DSM 40212 PRJNA299220_c087 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces pseudovenezuelae 67350 LMWM00000000.1 Bac0013348 Streptomyces yokosukanensis strain DSM 40224 PRJNA299221_c188 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces yokosukanensis 67386 LMWN00000000.1 Bac0013349 Streptomyces corchorusii strain DSM 40340 PRJNA299223_c116 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces corchorusii 29 mesophilic 1903 LMWP00000000.1 Bac0013350 Streptomyces griseorubiginosus strain DSM 40469 PRJNA299230_c063 "Streptomyces griseorubiginosus strain DSM 40469 (PRJNA299230_c063) is a Gram-positive bacterium belonging to the genus Streptomyces, known for its filamentous growth and ability to produce a variety of bioactive compounds. This strain is characterized by its robust mycelial structure, which is indicative of its capability to thrive in diverse environments, often in soil or decaying organic matter. ↵↵As a member of the Actinobacteria phylum, S. griseorubiginosus contributes significantly to the microbial diversity and biochemical processes within its ecosystem. The Gram-positive nature of this organism suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environmental conditions. ↵↵While specific metabolic pathways and secondary metabolites produced by this strain are not detailed in the provided traits, Streptomyces species are renowned for their ability to synthesize antibiotics and other pharmacologically relevant compounds. This characteristic positions S. griseorubiginosus as a potential candidate for biotechnological applications, particularly in antibiotic discovery.↵↵Further exploration of this strain could reveal insights into its ecological role and interactions with other microorganisms in its habitat. Given the well-documented ability of Streptomyces species to degrade complex organic materials, S. griseorubiginosus may play an essential role in nutrient cycling and soil health, highlighting its significance in both environmental microbiology and potential agricultural applications." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseorubiginosus Positive 67304 LMWV00000000.1 Bac0013351 Vibrio toranzoniae strain Vb 10.8 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio toranzoniae 1194427 LMXU00000000.1 Bac0013352 Chlorobi bacterium OLB7 Pseudomonadati Chlorobiota Chlorobi bacterium OLB7 1619898 LMYZ00000000.1 Bac0013353 Pedobacter ginsenosidimutans strain KACC 14530 "Pedobacter ginsenosidimutans strain KACC 14530 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and has an optimal growth temperature of 29.0°C. As a non-spore-forming organism, this strain exhibits consistent cellular morphology and growth characteristics under controlled laboratory conditions. ↵↵The Gram-negative nature of P. ginsenosidimutans suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this bacterial group. This structural feature may influence its interactions within various environments, particularly in terms of resistance to certain antibiotics and environmental stressors. The aerobic requirement indicates that strain KACC 14530 relies on oxygen for its metabolic processes, positioning it within ecosystems where oxygen is readily available.↵↵Given its specific growth temperature, P. ginsenosidimutans may be well adapted to moderate climates or specific niches such as soil or decaying organic matter, where it could play a role in biogeochemical cycles. Its unique profile may suggest potential applications in biotechnology, particularly in the field of bioremediation or organic matter decomposition, where aerobic bacteria are often instrumental. Further investigation into the metabolic pathways and ecological roles of this strain could provide insights into its interactions with other microorganisms and its contributions to nutrient cycling in its native habitat." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter ginsenosidimutans Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 687842 LMZQ00000000.1 Bac0013354 Chloroflexi bacterium OLB14 Bacillati Chloroflexota Tepidiformia Chloroflexi bacterium OLB14 1617415 LMZR00000000.1 Bac0013355 Methanobacterium formicicum Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum 2162 LN515531.1 Bac0013356 Rhizobium altiplani strain BR 10423 "Rhizobium altiplani strain BR 10423 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 29.0°C, highlighting its potential adaptability to specific environmental conditions. As a member of the Rhizobium genus, it is likely involved in symbiotic relationships with leguminous plants, facilitating nitrogen fixation, although specific interactions for strain BR 10423 have not been detailed in the provided traits.↵↵The absence of sporulation indicates that this strain may rely on other survival strategies under adverse conditions, such as forming biofilms or utilizing nutrient reserves. The aerobic nature of Rhizobium altiplani strain BR 10423 suggests a dependence on oxygen-rich environments for its metabolic activities, which could influence its distribution and ecological interactions in soil ecosystems.↵↵Understanding the growth conditions and metabolic requirements of R. altiplani strain BR 10423 can inform agricultural practices, particularly in optimizing soil health and enhancing crop productivity through nitrogen-fixing symbiosis. This strain exemplifies the intricate relationships between microbes and plants, underscoring the importance of bacterial diversity in maintaining ecosystem functionality and soil fertility." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium altiplani Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 1864509 LNCD00000000.1 Bac0013357 Bradyrhizobium macuxiense strain BR 10303 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium macuxiense 1755647 LNCU00000000.1 Bac0013358 Thermotoga sp. KOL6 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. KOL6 126741 LNDE00000000.1 Bac0013359 Candidatus Methanofastidiosum methylothiophilum Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia Candidatus Methanofastidiosales Candidatus Methanofastidiosaceae Candidatus Methanofastidiosum Candidatus Methanofastidiosum methylothiophilum 1705564 LNGD00000000.1 Bac0013360 Trueperella bernardiae strain LCDC 89-0504 "Trueperella bernardiae strain LCDC 89-0504 is a spherical, non-spore-forming microbe that exhibits microaerophilic growth characteristics. This strain thrives in environments with low oxygen tension, which is typical of certain ecological niches where oxygen levels are limited but not absent. The spherical shape of T. bernardiae suggests a potential adaptation to its microaerophilic lifestyle, as such morphology may facilitate efficient nutrient uptake and metabolic processes in oxygen-restricted conditions.↵↵As a member of the genus Trueperella, this strain is likely to engage in complex interactions with its surrounding microbial community, potentially influencing local microbial dynamics through its metabolic activities. The absence of sporulation in this strain may indicate a reliance on stable, favorable conditions for growth, as opposed to the survival strategies often employed by spore-forming bacteria that allow them to endure harsh environments.↵↵Understanding the specific growth conditions and ecological roles of Trueperella bernardiae strain LCDC 89-0504 can provide valuable insights into its potential applications in biotechnology or its role in specific ecological contexts. Further research into its metabolic capabilities and interactions with other microorganisms could elucidate its importance in microaerophilic environments, potentially revealing novel functions within microbial consortia." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Trueperella Trueperella bernardiae sphere non-motile microaerophile non-spore-forming 59561 LNIZ00000000.1 Bac0013361 Bifidobacterium adolescentis strain 70B "Bifidobacterium adolescentis strain 70B is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in a single-cell arrangement and thrives in anaerobic environments. This strain is optimally adapted to a temperature of 37.0°C, which aligns well with the physiological conditions found within the intestines of its host organisms, where it is habitually associated. ↵↵As a member of the Bifidobacteriaceae family, Bifidobacterium adolescentis plays a significant role in the gut microbiota, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which can benefit host metabolism. The anaerobic nature of this strain underscores its adaptation to the low-oxygen conditions prevalent in the gastrointestinal tract. ↵↵Furthermore, the presence of Bifidobacterium adolescentis strain 70B may reflect a specific ecological niche in the gut microbiome, where it could interact synergistically with other microbial species to influence overall gut health and maintain a balanced microbial ecosystem. This highlights the importance of anaerobic bacteria in shaping host-associated microbiomes and their potential roles in promoting host health through metabolic activities." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 LNKC00000000.1 Bac0013362 Bifidobacterium adolescentis strain AD2-8 "Bifidobacterium adolescentis strain AD2-8 is a Gram-positive, non-sporulating rod-shaped bacterium that exists predominantly in a single-cell arrangement. This strain is classified as an anaerobe, thriving in environments devoid of oxygen, and it has an optimal growth temperature of 37.0°C, which aligns closely with the physiological conditions found in the human gut. ↵↵As a member of the Bifidobacterium genus, this strain is typically associated with host organisms, suggesting a symbiotic relationship that may play a role in digestive health. Bifidobacteria are often recognized for their potential prebiotic effects, contributing to gut microbiota balance and potentially influencing immune responses. ↵↵Given its anaerobic nature and host-associated habitat, Bifidobacterium adolescentis strain AD2-8 may participate in fermentative processes within the gastrointestinal tract, aiding in the breakdown of complex carbohydrates and promoting the production of beneficial short-chain fatty acids. This metabolic activity not only supports the health of the host but may also inhibit the growth of pathogenic microorganisms, underscoring the importance of this strain in maintaining gut homeostasis and overall well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 LNKF00000000.1 Bac0013363 Bifidobacterium adolescentis strain AL12-4 "Bifidobacterium adolescentis strain AL12-4 is a Gram-positive, non-sporulating rod-shaped bacterium that typically exists in a single-cell arrangement. This strain is an anaerobic organism, thriving in environments devoid of oxygen, and has an optimal growth temperature of 37.0°C, which aligns with the physiological conditions of the human gut where it is commonly found. As a member of the Bifidobacterium genus, it is primarily associated with host environments, indicating its potential role in symbiotic relationships with its host or in contributing to gut microbiota composition. ↵↵The anaerobic nature of Bifidobacterium adolescentis strain AL12-4 suggests its adaptation to the complex microenvironments within the gastrointestinal tract, where oxygen levels are low. This adaptation may influence not only its survival but also its metabolic functions, potentially contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut health. The ability of this strain to persist in host-associated habitats underscores its ecological importance in maintaining a balanced microbiome, which can influence overall host health and well-being. Further exploration of its specific metabolic pathways could provide insights into its potential prebiotic effects and implications for human health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 LNKG00000000.1 Bac0013364 Haemophilus influenzae biotype aegyptius strain F3042 "Haemophilus influenzae biotype aegyptius strain F3042 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultatively anaerobic metabolic capabilities, thriving optimally at a temperature of 35.0°C. This strain is notably host-associated, suggesting an ecological niche that may involve interactions with host organisms, potentially influencing its growth and survival dynamics. ↵↵The Gram-negative cell wall structure of H. influenzae biotype aegyptius is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in varying oxygen conditions. The facultative anaerobic nature of this strain indicates that it can switch between aerobic respiration and fermentation processes, thereby allowing it to exploit diverse environments within host tissues. ↵↵Given its optimal growth temperature, this strain may be adapted to the warm environments typically found within mammalian hosts, which further supports its association with host organisms. The physiological traits of H. influenzae biotype aegyptius strain F3042 underscore its potential role in specific host-associated ecosystems, possibly influencing microbial community dynamics and host health in ways that merit further investigation. Understanding these interactions could provide deeper insights into the ecological roles of this bacterium and its potential implications in host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 727 LNKO00000000.1 Bac0013365 Haemophilus influenzae biotype aegyptius strain F3030 "Haemophilus influenzae biotype aegyptius strain F3030 is a Gram-negative, rod-shaped bacterium that demonstrates versatility in its oxygen requirements, functioning as both an aerobe and a facultative anaerobe. This strain thrives optimally at a temperature of 35.0°C, which aligns closely with the average body temperature of mammals, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Haemophilus species, strain F3030 is likely to inhabit mucosal surfaces, where it may play a role in the complex interplay of microbial communities in the host. The ability to survive in both aerobic and anaerobic conditions further enhances its adaptability to various microenvironments found within biological hosts. This trait may enable the bacterium to persist in different niches, such as respiratory tracts or other mucosal sites, where oxygen levels can fluctuate.↵↵In summary, the physiological traits of Haemophilus influenzae biotype aegyptius strain F3030 suggest a specialized adaptation to host-associated environments, reflecting the intricate relationships that exist between microbial inhabitants and their hosts. Understanding these traits can provide insights into the ecological dynamics of commensal and pathogenic interactions in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 727 LNKQ00000000.1 Bac0013366 Enterococcus faecium strain VRE-1401318 "Enterococcus faecium strain VRE-1401318 is a Gram-positive coccus that demonstrates facultative anaerobic growth. This strain has been isolated from fermented mare milk, suggesting its adaptation to a unique niche within dairy fermentation processes. Enterococcus faecium is characterized by its ability to thrive in varied oxygen conditions, allowing it to play a versatile role in microbial communities associated with fermented products.↵↵The presence of this strain in fermented mare milk highlights its potential significance in dairy microbiology, particularly regarding its contributions to the fermentation process and potential effects on the sensory properties of the final product. Furthermore, the ability of E. faecium to survive and proliferate in a lactate-rich environment, typical of fermented dairy products, underscores its role in the complex interactions that occur during fermentation, including the interplay with other microbial species.↵↵The ecological implications of E. faecium strain VRE-1401318 in fermented mare milk may also extend to its potential influence on the preservation and safety of the product, as well as its interactions with host microbiota upon consumption. Therefore, understanding the traits and behaviors of this strain within its specific habitat may provide insights into its functional roles and contributions to fermented dairy ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 LNLS00000000.1 Bac0013367 Peribacillus simplex strain VanAntwerpen02 "Peribacillus simplex strain VanAntwerpen02 is a Gram-positive, rod-shaped bacterium primarily found in warm arid soils. This strain exhibits an aerobic metabolism, indicating its requirement for oxygen to sustain its growth and biochemical processes. The adaptation to its habitat suggests a potential role in nutrient cycling within arid ecosystems, where it may contribute to the degradation of organic matter or the mobilization of nutrients in nutrient-poor soils. Understanding the physiological and ecological traits of Peribacillus simplex strain VanAntwerpen02 can provide insights into microbial diversity and functionality in harsh environments, highlighting the resilience of microbial life in extreme conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus simplex positive Rod aerobic warm arid soils 1478 LNNH00000000.1 Bac0013368 Arthrobacter sp. NIO-1057 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. NIO-1057 993071 LNQJ00000000.1 Bac0013369 Pseudarthrobacter enclensis strain NIO-1008 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter enclensis 993070 LNQM00000000.1 Bac0013370 Priestia veravalensis strain SGD-V-76 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia veravalensis 1414648 LNQP00000000.1 Bac0013371 Candidatus Magnetominusculus xianensis strain HCH-1 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Candidatus Magnetominusculus Candidatus Magnetominusculus xianensis 1748249 LNQR00000000.1 Bac0013372 Arthrobacter sp. EPSL27 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. EPSL27 1745378 LNUT00000000.1 Bac0013373 Legionella brunensis strain ATCC 43878 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella brunensis microaerophile 29422 LNXV00000000.1 Bac0013374 Legionella erythra strain SE-32A-C8 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella erythra microaerophile 448 LNYA00000000.1 Bac0013375 Legionella feeleii strain WO-44C Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella feeleii 453 LNYB00000000.1 Bac0013376 Legionella jamestowniensis strain JA-26-G1-E2 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella jamestowniensis 455 LNYG00000000.1 Bac0013377 Legionella maceachernii strain PX-1-G2-E2 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella maceachernii microaerophile 466 LNYL00000000.1 Bac0013378 Legionella oakridgensis strain Oak Ridge-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella oakridgensis 29423 LNYP00000000.1 Bac0013379 Legionella shakespearei DSM 23087 strain ATCC 49655 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella shakespearei 45075 LNYW00000000.1 Bac0013380 Legionella spiritensis strain Mt.St.Helens-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella spiritensis microaerophile Fresh water 452 LNYX00000000.1 Bac0013381 Legionella worsleiensis strain ATCC 49508 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella worsleiensis microaerophile 45076 LNZC00000000.1 Bac0013382 Leifsonia xyli subsp. xyli strain gdw1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia xyli 1575 LNZG00000000.1 Bac0013383 Vibrio cidicii strain 2538-88 "Vibrio cidicii strain 2538-88 is a Gram-negative, rod-shaped bacterium. This strain is characterized by its distinctive shape and staining properties, which are typical of the Vibrio genus. Gram-negative bacteria are recognized for their complex cell wall structure, which includes an outer membrane containing lipopolysaccharides, contributing to their resilience in various environments. ↵↵While specific metabolic capabilities, growth conditions, and ecological roles of Vibrio cidicii strain 2538-88 are not detailed here, the presence of its genus suggests potential adaptations to aquatic environments, as members commonly inhabit marine and estuarine ecosystems. Vibrio species are often associated with nutrient-rich environments, which may enhance their growth and survival.↵↵The rod shape of Vibrio cidicii strain 2538-88 may confer advantages in motility and nutrient uptake, allowing for efficient movement and interaction with its surroundings. This morphological trait is typical of many bacteria in aquatic environments, where the ability to navigate through liquid media can be critical for colonization and resource acquisition.↵↵Overall, the characteristics of Vibrio cidicii strain 2538-88 suggest a potential role in the microbial dynamics of its natural habitat, likely influencing nutrient cycling and microbial community structure. Understanding its specific ecological interactions would require further investigation into its metabolic pathways and behaviors within its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cidicii Gram-negative rod 1763883 LOBR00000000.1 Bac0013384 Amycolatopsis regifaucium strain GY080 "Amycolatopsis regifaucium strain GY080 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 32.0°C under aerobic conditions. This organism belongs to the genus Amycolatopsis, which is recognized for its diverse metabolic pathways and capacity to produce various secondary metabolites, including antibiotics and other bioactive compounds.↵↵As a spore-forming microbe, A. regifaucium strain GY080 has adapted to survive in fluctuating environmental conditions, potentially enabling it to persist in ecological niches where resources may be limited or sporadic. The aerobic nature of this strain suggests that it plays a role in environments rich in oxygen, allowing it to participate in processes such as organic matter degradation and nutrient cycling.↵↵The optimal growth temperature of 32.0°C indicates that A. regifaucium strain GY080 may be particularly suited to moderate thermal environments, which could influence its ecological distribution and interactions within microbial communities. Overall, the traits of this strain suggest it may contribute significantly to the microbial diversity and functionality in its habitat, particularly in the context of organic decomposition and secondary metabolite production." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis regifaucium Gram-positive rod non-motile aerobic 32 mesophilic spore-forming 546365 LOBU00000000.2 Bac0013385 Desulfitobacterium hafniense strain DH "Desulfitobacterium hafniense strain DH is a Gram-positive bacterium recognized for its ability to perform reductive dehalogenation, a process that contributes to bioremediation efforts, particularly in the detoxification of chlorinated organic compounds. This strain is part of the genus Desulfitobacterium, which is characterized by its anaerobic metabolism. D. hafniense strain DH utilizes a variety of electron donors, showcasing metabolic versatility that allows it to thrive in environments depleted of oxygen.↵↵Under anaerobic conditions, D. hafniense strain DH can utilize organohalides as terminal electron acceptors, facilitating the removal of halogen atoms from organic molecules. This metabolic capability highlights the strain's potential relevance in environmental microbiology, particularly in the degradation of pollutants in contaminated sites. The strain's enzymatic pathways for dehalogenation are of significant interest for biotechnological applications aimed at environmental cleanup.↵↵Additionally, the bacterium's Gram-positive nature suggests a robust cell wall structure, which may contribute to its survival in challenging environments where it encounters toxic compounds. This structural characteristic may also affect its interaction with other microbial communities and its resilience to various stressors. Overall, D. hafniense strain DH exemplifies the complex interplay between microbial metabolism and environmental remediation, underscoring the potential of anaerobic bacteria in biotechnological innovations for sustainable practices." Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium hafniense positive 49338 LOCK00000000.1 Bac0013386 Streptomyces silvensis strain ATCC 53525 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces silvensis 1765722 LOCL00000000.1 Bac0013387 Janthinobacterium psychrotolerans strain S3-2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium psychrotolerans 1747903 LOCQ00000000.1 Bac0013388 Escherichia coli strain STEC 309 "Escherichia coli strain STEC 309 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting a close association with such environments. As a facultative anaerobe, E. coli strain STEC 309 possesses the metabolic flexibility to grow in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within its host-associated habitat.↵↵The choice of a host-associated habitat indicates that STEC 309 may have evolved specific adaptations to survive and proliferate within the gastrointestinal tracts of its hosts. This characteristic highlights the potential for complex interactions with the host microbiome, which may influence nutrient availability and microbial community dynamics. Understanding these relationships is crucial for elucidating the ecological role of STEC 309 and its potential implications in gut health and disease processes. Overall, the adaptability of E. coli strain STEC 309 to different oxygen conditions and its optimal growth temperature underscore its ecological versatility within host environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LOCS00000000.1 Bac0013389 Megasphaera sp. DJF_B143 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera sp. DJF_B143 537288 LODR00000000.1 Bac0013390 Sinorhizobium americanum strain FG01 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium americanum 194963 LODU00000000.1 Bac0013391 Desulfitibacter sp. BRH_c19 BRHa_1007293 Bacillati Bacillota Clostridia Neomoorellales Desulfitibacteraceae Desulfitibacter Desulfitibacter sp. BRH_c19 1734395 LOER00000000.1 Bac0013392 Pseudoalteromonas sp. H103 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. H103 1761893 LOFG00000000.1 Bac0013393 Escherichia coli strain STEC 1686 "Escherichia coli strain STEC 1686 is a Gram-negative, rod-shaped bacterium that typically exists as single cells or in pairs. This strain thrives optimally at 37.0°C, a temperature that aligns with the body temperature of many host organisms, suggesting a close association with warm-blooded animals. E. coli STEC 1686 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which may enhance its survival within diverse host-associated habitats.↵↵The habitat of E. coli STEC 1686 is primarily host-associated, reflecting its role within the gastrointestinal tract of mammals. This association may facilitate interactions with the host's microbiota and immune system, potentially impacting its ecological niche and functional roles. ↵↵Overall, the combination of its Gram-negative status, rod shape, and facultative anaerobic metabolism allows E. coli STEC 1686 to adapt to various microenvironments within the host, thereby contributing to its ecological versatility and potential influence on host health. This adaptability underscores the importance of studying E. coli strains like STEC 1686 to better understand their roles in microbial communities and host interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LOGT00000000.1 Bac0013394 Pseudomonas caspiana strain FBF102 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas caspiana aerobic 1451454 LOHF00000000.1 Bac0013395 Streptomyces jeddahensis strain G25 "Streptomyces jeddahensis strain G25 is a Gram-positive, aerobic, spore-forming bacterium belonging to the genus Streptomyces, which is renowned for its ability to produce a diverse array of secondary metabolites. This strain exhibits the characteristic filamentous growth pattern associated with many members of the Streptomyces genus, which contributes to its ecological role in soil environments, where it plays a significant part in organic matter decomposition. ↵↵As an aerobic organism, S. jeddahensis strain G25 requires oxygen for its metabolic processes, highlighting its adaptation to oxygen-rich environments. The ability to form spores is a crucial survival strategy, allowing the bacterium to withstand unfavorable conditions and persist in various habitats. The spore-forming capability also suggests potential resilience in nutrient-limited or harsh environments, enabling the strain to remain viable until conditions are favorable for growth.↵↵The biological insights provided by the traits of S. jeddahensis strain G25 indicate its potential role in biogeochemical cycling and its significance in soil health. Given the ecological importance of Streptomyces species in the production of antibiotics and other bioactive compounds, S. jeddahensis strain G25 may also contribute to the microbial diversity that underpins the functionality of its ecosystem, potentially influencing interactions with other soil microorganisms and plants. Thus, the characterization of this strain could be essential for understanding its contributions to soil ecology and its potential applications in biotechnology." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces jeddahensis Gram-positive non-motile aerobic spore-forming 1716141 LOHS00000000.1 Bac0013396 Thermovenabulum gondwanense strain R270 "Thermovenabulum gondwanense strain R270 is a Gram-positive, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This thermophilic microbe is characterized by its inability to form spores, which suggests a reliance on stable environmental conditions for survival and reproduction. Its anaerobic nature indicates that it is adapted to habitats where oxygen is limited, and it may play a role in the biochemical processes of such environments, likely contributing to organic matter decomposition.↵↵The physiological traits of T. gondwanense strain R270 suggest its potential involvement in thermophilic microbial communities, where it could interact with other anaerobic organisms. These interactions may be critical for nutrient cycling in high-temperature ecosystems, such as geothermal environments or deep-sea hydrothermal vents. Understanding this bacterium's role may provide insights into the resilience and adaptability of microbial life in extreme conditions, further illuminating the diversity of metabolic pathways utilized by anaerobes in thermophilic settings." Bacillati Bacillota Clostridia Thermosediminibacterales Thermosediminibacteraceae Thermovenabulum Thermovenabulum gondwanense Gram-positive rod anaerobic 45 thermophilic non-spore-forming 520767 LOHZ00000000.1 Bac0013397 Rhizobium sp. N4311 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. N4311 1703972 LOID00000000.1 Bac0013398 Xanthomonas axonopodis pv. melhusii strain LMG9050 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas axonopodis 53413 LOJW00000000.1 Bac0013399 Xanthomonas campestris pv. vitiscarnosae strain LMG939 "Xanthomonas campestris pv. vitiscarnosae strain LMG939 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, with an optimal growth temperature of 25.0°C. This strain exhibits aerobic respiration, indicating a reliance on oxygen for its metabolic processes. ↵↵As a member of the Xanthomonas genus, this strain is part of a broader group known for their plant-associated lifestyles, often leading to significant interactions with host plants. The specific habitat and aerobic nature of Xanthomonas campestris pv. vitiscarnosae strain LMG939 suggest that it may play a role in the complex microbial communities associated with plant surfaces or within plant tissues.↵↵Understanding the ecological implications of this strain may provide insights into its interactions within these communities, potentially influencing plant health and microbiome dynamics. The association with hosts and its environmental preferences highlight the adaptability of this bacterium to specific ecological niches, emphasizing its potential role in the intricate network of plant-associated microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas campestris Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living 339 LOKI00000000.1 Bac0013400 Rhizobium sp. R634 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. R634 1764274 LOKW00000000.1 Bac0013401 Rhizobium sp. R635 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. R635 1764275 LOKX00000000.1 Bac0013402 Bacillus cereus strain FSL K6-0267 "Bacillus cereus strain FSL K6-0267 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in its metabolic processes. The habitat of Bacillus cereus strain FSL K6-0267 encompasses multiple environments, suggesting a versatile ecological adaptability that may contribute to its persistence in various niches. ↵↵The ability of this strain to form chains can be indicative of its growth characteristics, which may facilitate its survival and colonization in diverse conditions. As a member of the Bacillus genus, it is important to consider that strains within this group are often resilient and can form endospores, although such specific traits were not provided for FSL K6-0267. ↵↵The ecological versatility exhibited by Bacillus cereus strain FSL K6-0267 may allow it to occupy a range of ecological roles, potentially including those associated with nutrient cycling in its habitats. This adaptability highlights the importance of understanding the specific conditions and environments that support its growth and survival, which can provide insights into its ecological impact and functional contributions in microbial ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LOMP00000000.1 Bac0013403 Bacillus cereus strain FSL W8-0275 "Bacillus cereus strain FSL W8-0275 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic growth. This strain thrives optimally at a temperature of 25.0°C and is capable of inhabiting a variety of environments, indicating its versatility and adaptability. The formation of chains is characteristic of many Bacillus species, which can enhance their survival in diverse habitats.↵↵As a member of the Bacillus genus, this strain possesses traits that may contribute to its ecological resilience. The aerobic nature suggests a reliance on oxygen for metabolism, which allows it to exploit niches where oxygen is readily available, potentially impacting nutrient cycling within its habitat. The ability to thrive in multiple environments highlights its ecological flexibility, allowing it to occupy various niches and interact with other microbial communities.↵↵Understanding the ecological role of Bacillus cereus strain FSL W8-0275 may provide insights into its contributions to soil health and nutrient dynamics, particularly in aerobic conditions. Its adaptability to different habitats could also suggest potential interactions with other microorganisms, influencing microbial community structure and function. Further exploration of this strain's ecological interactions can enhance our understanding of its role in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LOMT00000000.1 Bac0013404 Haloferax marisrubri strain SB3 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax marisrubri 1544719 LOPW00000000.2 Bac0013405 Corynebacterium glutamicum strain ATCC 13870 N_37 "Corynebacterium glutamicum strain ATCC 13870 N_37 is a Gram-positive bacterium recognized for its industrial significance, particularly in amino acid production. This strain is part of the Corynebacterium genus, which is characterized by its club-shaped morphology and non-pathogenic nature. C. glutamicum is notable for its ability to synthesize various amino acids, most prominently L-glutamate and L-lysine, making it a vital organism in biotechnological applications.↵↵The strain's cellular structure, consistent with Gram-positive bacteria, is characterized by a thick peptidoglycan layer that provides structural integrity and contributes to its survival in various environments. The physiological traits of C. glutamicum allow it to thrive in nutrient-rich conditions, which are often exploited in industrial fermentation processes. ↵↵Corynebacterium glutamicum also possesses metabolic versatility, enabling it to utilize a range of carbon sources for growth and production. This adaptability not only enhances its potential in industrial settings but also underlines its ecological role in nutrient cycling within microbial communities. ↵↵Furthermore, its capacity to produce amino acids in large quantities has implications for both food and pharmaceutical industries, highlighting the importance of this strain in bioprocessing. The unique properties of C. glutamicum ATCC 13870 N_37 exemplify how microorganisms can be harnessed for biotechnological advancements while shedding light on their contributions to ecological interactions within their habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum positive 1718 LOQV00000000.1 Bac0013406 Burkholderia sp. ABCPW 14 strain ABCPW-14 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. ABCPW 14 1637860 LOVS00000000.1 Bac0013407 Burkholderia sp. TSV86 TSV86_99 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. TSV86 1385594 LOWB00000000.1 Bac0013408 Burkholderia seminalis strain FL-5-5-10-S1-D0 "Burkholderia seminalis strain FL-5-5-10-S1-D0 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative aerobic metabolism. This strain is versatile in its habitat, being capable of thriving in multiple environments, which suggests an adaptive nature that may allow it to exploit various ecological niches.↵↵As a member of the Burkholderia genus, this strain may share traits with other species in terms of metabolic flexibility and environmental resilience. The facultative aerobic requirement indicates that Burkholderia seminalis strain FL-5-5-10-S1-D0 can utilize both oxygen-dependent and oxygen-independent pathways for energy production, enhancing its survival in fluctuating oxygen conditions. ↵↵The nonsporulating characteristic implies that this strain does not form spores, which may influence its ecological interactions and survival strategies in different habitats. Understanding the specific environmental conditions that support its growth might provide insights into its potential roles in nutrient cycling or interactions with other microbial communities. Given its ability to inhabit diverse environments, this strain may contribute to the microbial diversity and functional capabilities of its respective ecosystems, potentially influencing soil health or plant interactions. Further studies are warranted to explore these ecological roles in greater detail." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia seminalis Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 488731 LOWU00000000.1 Bac0013409 Burkholderia sp. FL-7-2-10-S1-D7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. FL-7-2-10-S1-D7 1637866 LOWY00000000.1 Bac0013410 Burkholderia cepacia strain MSMB1302 MSMB1302_99 "Burkholderia cepacia strain MSMB1302 (MSMB1302_99) is a Gram-negative, microaerophilic bacterium. This strain is characterized by its ability to thrive in environments with reduced levels of oxygen, indicating a specialized metabolic adaptation that may allow it to occupy ecological niches where oxygen availability is limited. As a member of the Burkholderia genus, it likely shares traits common to this group, including diverse metabolic capabilities and resilience in various environmental conditions.↵↵The microaerophilic nature of MSMB1302 suggests that it may engage in unique respiratory processes, potentially utilizing alternative electron acceptors in low-oxygen environments. This metabolic flexibility could be advantageous in habitats such as soil or water, where oxygen levels fluctuate, allowing the strain to persist and compete with other microorganisms.↵↵Given the traits of B. cepacia, strain MSMB1302 may also play a role in biogeochemical cycles, particularly in nutrient cycling in microaerobic conditions. Its presence in such environments could influence the dynamics of microbial communities and contribute to the degradation of organic matter, highlighting the ecological significance of this strain in specific habitats where oxygen is scarce yet vital for microbial activity." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 LOYH00000000.1 Bac0013411 Burkholderia sp. MSMB1552 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. MSMB1552 1636424 LOZR00000000.1 Bac0013412 Burkholderia pyrrocinia strain MSMB1755 MSMB1755_99 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pyrrocinia 60550 LOZU00000000.1 Bac0013413 Burkholderia ubonensis strain MSMB1600WGS Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 LPAK00000000.1 Bac0013414 Burkholderia vietnamiensis strain AU15829 "Burkholderia vietnamiensis strain AU15829 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic metabolism, allowing it to thrive in various environments where oxygen availability fluctuates. This strain is part of the Burkholderia genus, which is known for its ecological versatility and ability to inhabit multiple habitats, suggesting a robust adaptability to diverse environmental conditions. ↵↵As a facultative aerobe, B. vietnamiensis strain AU15829 can utilize both aerobic respiration and fermentation, granting it metabolic flexibility that may contribute to its survival in competitive microbial communities. This metabolic versatility is particularly advantageous in environments where oxygen levels can vary, enabling the organism to exploit a range of substrates and respond to changing nutrient availability.↵↵The ecological implications of B. vietnamiensis strain AU15829's traits are significant, as its presence in multiple habitats indicates potential roles in biogeochemical cycles and interactions with other microorganisms. Its adaptability may facilitate its utilization in bioremediation strategies or as a model organism for studying microbial ecology in variable environments. The ability to thrive under diverse conditions underscores the importance of B. vietnamiensis strain AU15829 in understanding microbial resilience and community dynamics in complex ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis Negative Rod Yes 2 Facultative aerobe Mesophilic Multiple Free living 60552 LPCM00000000.1 Bac0013415 Burkholderia vietnamiensis strain HI3392 "Burkholderia vietnamiensis strain HI3392 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is part of a genus known for its versatility, as it can inhabit a variety of ecological niches, which may include soil, water, and other diverse habitats.↵↵The facultative aerobic nature of B. vietnamiensis strain HI3392 suggests that it possesses a metabolic flexibility advantageous for colonizing environments with fluctuating oxygen levels. This adaptability may contribute to its survival and growth in complex ecosystems where competition for resources is prevalent. Furthermore, the ability to utilize different electron acceptors under varying oxygen conditions may enhance its ecological interactions, potentially influencing nutrient cycling and microbial community dynamics.↵↵In summary, Burkholderia vietnamiensis strain HI3392 exemplifies the adaptability of the Burkholderia genus, showcasing traits that enable it to occupy multiple habitats and maintain metabolic versatility in diverse environments. This adaptability could play a significant role in its ecological contributions, particularly in nutrient cycling processes within its habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis Negative Rod Yes 2 Facultative aerobe Mesophilic Multiple Free living 60552 LPCS00000000.1 Bac0013416 Burkholderia ubonensis strain MSMB1608WGS Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 LPGK00000000.1 Bac0013417 Burkholderia ubonensis strain MSMB2087WGS Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 LPHD00000000.1 Bac0013418 Burkholderia ubonensis strain MSMB2167WGS Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 LPIX00000000.1 Bac0013419 Burkholderia ubonensis strain MSMB778WGS Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 LPLS00000000.1 Bac0013420 bacterium F083 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Candidatus Hemicellulosilyticus Candidatus Hemicellulosilyticus sp. F083 1768114 LPNF00000000.1 Bac0013421 Enterobacter roggenkampii strain SMART_454 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter roggenkampii 1812935 LPPZ00000000.1 Bac0013422 Sinorhizobium glycinis strain CCBAU 23380 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium glycinis 1472378 LPUX00000000.1 Bac0013423 Tritonibacter horizontis strain O3.65 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tritonibacter Tritonibacter horizontis 1768241 LPUY00000000.1 Bac0013424 Ferroacidibacillus organovorans strain ITV01 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Ferroacidibacillus Ferroacidibacillus organovorans 1765683 LPVJ00000000.1 Bac0013425 Mesorhizobium loti strain UFLA 01-765 "Mesorhizobium loti strain UFLA 01-765 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This strain is known to inhabit a variety of environments, indicating its adaptability and potential versatility in different ecological contexts. As a member of the Mesorhizobium genus, it is likely involved in nitrogen fixation, a process essential for converting atmospheric nitrogen into a form usable by plants, particularly legumes.↵↵The aerobic nature of Mesorhizobium loti strain UFLA 01-765 suggests it thrives in oxygen-rich environments, which may facilitate its metabolic processes and interactions with host plants. Its ability to occupy multiple habitats points to a potential role in various soil ecosystems, contributing to soil health and fertility through nitrogen cycling.↵↵In summary, the ecological significance of Mesorhizobium loti strain UFLA 01-765 may extend beyond its nitrogen-fixing capabilities, as its adaptability to diverse environments could influence nutrient dynamics and microbial community structure in the ecosystems it inhabits." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 381 LPWA00000000.1 Bac0013426 Methyloceanibacter stevinii strain R-67176 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Methyloceanibacter Methyloceanibacter stevinii 1774970 LPWE00000000.1 Bac0013427 Alkalispirochaeta sphaeroplastigenens strain JC133 "Alkalispirochaeta sphaeroplastigenens strain JC133 is a Gram-negative, anaerobic microbe characterized by its curved or spiral morphology. This strain thrives optimally at a temperature of 37.0°C, indicating its potential adaptation to mesophilic environments. The Gram-negative nature of A. sphaeroplastigenens strain JC133 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that may confer specific advantages in its ecological niche, including resistance to certain antibiotics and the ability to engage in complex interactions with other microbial communities.↵↵As an anaerobic organism, A. sphaeroplastigenens strain JC133 likely participates in environments devoid of oxygen, such as sediments or digestive systems of various organisms, where it may contribute to biogeochemical cycles. The unique morphology of this strain, characterized by its curved or spiral shape, could enhance its motility and colonization abilities in such anaerobic habitats. This feature may facilitate its role in the breakdown of organic compounds, potentially influencing nutrient cycling within its ecosystem. Understanding the physiological traits of A. sphaeroplastigenens strain JC133 provides insight into its adaptive strategies, especially in anaerobic conditions, and highlights the diversity of microbial life in niche environments." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Alkalispirochaeta Alkalispirochaeta sphaeroplastigenens Gram-negative curved/spiral anaerobic 37 mesophilic 2024958 LPWH00000000.1 Bac0013428 Comamonas kerstersii strain 12322-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas kerstersii 225992 LPXH00000000.1 Bac0013429 Micrococcus luteus strain NDB3Y10 "Micrococcus luteus strain NDB3Y10 is a Gram-positive coccus that typically exhibits a tetrad arrangement. This strain is classified as an aerobic organism, requiring oxygen for growth and metabolism. Micrococcus luteus species are known to thrive in various habitats, suggesting a degree of environmental versatility. ↵↵As a member of the Micrococcaceae family, M. luteus is characterized by its spherical shape and the formation of tetrads, which may influence its ecological interactions and colonization patterns. The presence of this strain in diverse environments indicates its adaptability and potential role in nutrient cycling and microbial communities.↵↵The ability of M. luteus strain NDB3Y10 to exist in multiple habitats as an aerobe may provide insights into its ecological significance, particularly in aerobic environments where it can contribute to the breakdown of organic matter and support other microbial life. This trait suggests that M. luteus could play a role in maintaining the balance of microbial ecosystems, particularly in soil or water where oxygen is readily available. Further investigation into the metabolic capabilities and interactions of this strain within its habitats could enhance our understanding of its ecological functions and contributions to microbial diversity." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 LQAC00000000.1 Bac0013430 Flammeovirga sp. SJP92 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga sp. SJP92 1775430 LQAQ00000000.1 Bac0013431 Firmicutes bacterium ML8_F2 Bacillati Bacillota Firmicutes bacterium ML8_F2 1775675 LQBG00000000.1 Bac0013432 Thiomicrospira sp. WB1 ZB100005 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira sp. WB1 1685380 LQBN00000000.1 Bac0013433 Thiomicrospira sp. XS5 ZB100022 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira sp. XS5 1775636 LQBO00000000.1 Bac0013434 Clostridiaceae bacterium JG1575 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium JG1575 1658742 LQGW00000000.1 Bac0013435 Stenotrophomonas maltophilia strain SM41 41_iontor_rep_c9361 "Stenotrophomonas maltophilia strain SM41 41_iontor_rep_c9361 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This strain is part of a genus known for its versatility in various environments, as evidenced by its ability to thrive in multiple habitats. ↵↵The Gram-negative classification of S. maltophilia indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. The rod shape is typical of many members within the family, allowing for adaptability in diverse ecological niches. As an aerobe, strain SM41 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen levels are variable.↵↵Notably, the ecological versatility of S. maltophilia suggests that it may play a significant role in nutrient cycling and the degradation of organic materials in its habitats. The ability to inhabit multiple environments could enable this strain to interact with various microbial communities, potentially impacting microbial dynamics and ecosystem functioning. Understanding the specific ecological roles of S. maltophilia, particularly strain SM41, could provide insights into its contributions to ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 LQIG00000000.1 Bac0013436 Mycobacterium sp. GA-1999 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. GA-1999 1772275 LQIL00000000.1 Bac0013437 Mycobacterium sp. IS-3022 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. IS-3022 1772277 LQIN00000000.1 Bac0013438 Mycobacterium sp. GA-1285 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. GA-1285 1772282 LQIS00000000.1 Bac0013439 Mycobacterium sp. GA-2829 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. GA-2829 1772283 LQIT00000000.1 Bac0013440 Amycolatopsis keratiniphila subsp. keratiniphila strain DSM 44409 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis keratiniphila 129921 LQMT00000000.2 Bac0013441 Helicobacter pylori strain UM303S "Helicobacter pylori strain UM303S is a Gram-negative microbe characterized by its spiral shape and single-cell arrangement. This strain thrives in microaerophilic conditions, indicating its requirement for low oxygen levels, which aligns with its natural habitat as a host-associated organism. Optimal growth for UM303S occurs at 37.0°C, which is consistent with the physiological temperature of the human stomach, suggesting an adaptation to its niche environment.↵↵The microaerophilic nature of H. pylori strains like UM303S is crucial for their survival and function within the acidic gastric environment. This adaptation enables the bacterium to evade the host's immune responses while also facilitating its metabolic processes. As a member of the Helicobacter genus, strain UM303S is likely involved in unique interactions within the host's gastric microbiome, potentially influencing gastric health and disease states. Understanding the specific traits of UM303S may provide insights into the ecological roles of H. pylori strains in human health and their adaptation mechanisms to challenging environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LQNA00000000.2 Bac0013442 Helicobacter pylori strain UM443R "Helicobacter pylori strain UM443R is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and a tendency to exist as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host environment. H. pylori is typically found in the gastric mucosa of humans and other mammals, indicating its specific adaptation to host-associated habitats.↵↵The microaerophilic nature of H. pylori suggests a specialized metabolic capability, allowing it to survive and proliferate in environments with reduced oxygen levels, such as the human stomach. The organism's unique morphology and habitat preference may play critical roles in its interactions with the host's immune system and gastric environment.↵↵The ability of H. pylori strain UM443R to occupy the gastric niche underscores its potential ecological significance in host-microbe interactions, particularly regarding its role in maintaining gastric homeostasis or contributing to dysbiosis under certain conditions. Further studies may elucidate the specific mechanisms by which this strain interacts with host factors, providing insights into its ecological role within the gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 LQNE00000000.2 Bac0013443 Streptococcus mitis strain DD26 "Streptococcus mitis strain DD26 is a Gram-positive coccus that typically arranges itself in chains or pairs. As a nonsporulating organism, it demonstrates a facultative anaerobic metabolism, allowing it to thrive in various environments where oxygen levels can fluctuate. This strain is primarily host-associated, indicating a close relationship with its host organisms, which may include humans and other mammals.↵↵S. mitis is part of the diverse group of commensal bacteria found in the oral cavity, where it plays a role in the normal microbiota. Its ability to grow in both aerobic and anaerobic conditions enhances its adaptability within the complex ecosystem of the human mouth, where oxygen availability can vary significantly. The presence of S. mitis in the oral microbiome suggests that it may contribute to maintaining the balance of microbial communities, potentially inhibiting the growth of pathogenic organisms through competitive exclusion or the production of antimicrobial substances.↵↵Given its characteristics, S. mitis strain DD26 may serve as an interesting model for studying microbial interactions within host-associated environments and the dynamics of commensal relationships. Understanding the ecological role of this strain could provide insights into its contributions to oral health and the maintenance of microbial homeostasis in the host." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 LQOD00000000.1 Bac0013444 Streptococcus oralis strain DD05 "Streptococcus oralis strain DD05 is a Gram-positive coccus that typically arranges itself in pairs or chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. As a member of the Streptococcus genus, S. oralis strain DD05 is host-associated, suggesting a close relationship with its host organism, which may influence its ecological niche and functional role within the host microbiome.↵↵This strain, like other members of the Streptococcus genus, may contribute to various biological processes in the host, such as carbohydrate fermentation and the modulation of local immune responses. Its facultative anaerobic nature allows it to adapt to dynamic conditions within the host environment, potentially playing a role in both health and disease states. Furthermore, the arrangement of cells in pairs or chains may facilitate cooperative interactions within microbial communities, possibly enhancing its survival and functional capabilities in the host-associated habitat.↵↵The unique combination of traits displayed by Streptococcus oralis strain DD05 underscores its potential importance in oral and systemic health, where it may interact with other microbial species to influence the overall balance of the microbiota and contribute to the host's homeostasis." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 LQOG00000000.1 Bac0013445 Mycobacterium bohemicum strain DSM 44277 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium bohemicum 56425 LQOK00000000.1 Bac0013446 Mycobacterium celatum strain DSM 44243 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium celatum 28045 LQOM00000000.1 Bac0013447 Mycolicibacterium confluentis strain DSM 44017 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium confluentis 28047 LQOQ00000000.1 Bac0013448 Mycolicibacter engbaekii strain ATCC 27353 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter engbaekii 188915 LQOT00000000.1 Bac0013449 Mycobacterium kubicae strain CIP 106428 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kubicae 120959 LQPD00000000.1 Bac0013450 Mycobacterium kyorinense strain DSM 45166 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kyorinense 487514 LQPE00000000.1 Bac0013451 Mycobacterium palustre strain DSM 44572 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium palustre 153971 LQPJ00000000.1 Bac0013452 Mycobacterium paraense strain IEC33 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paraense microaerophile 767916 LQPN00000000.1 Bac0013453 Mycobacterium saskatchewanense strain DSM 44616 "Mycobacterium saskatchewanense strain DSM 44616 is a rod-shaped bacterium that exhibits optimal growth at 32.0°C. This strain is a member of the genus Mycobacterium, which is characterized by its distinctive cell wall structure, primarily composed of mycolic acids. These structural components contribute to the organism's resilience in various environments. ↵↵The specific growth temperature of 32.0°C suggests that M. saskatchewanense may thrive in cooler habitats, potentially aligning with its isolation from environments that are less hospitable to many other mycobacterial species. The rod shape is a notable morphological trait that may facilitate its adaptation to such ecological niches, allowing for efficient nutrient uptake and motility in its surroundings. ↵↵Understanding the optimal growth conditions of M. saskatchewanense can provide insights into its ecological role and potential applications in biotechnology or environmental microbiology. The ability of this strain to survive and proliferate at moderate temperatures may offer advantages in bioremediation processes, particularly in temperate climates where cooler conditions prevail. Further studies could elucidate the specific ecological interactions and functions of this organism in its native habitat, contributing to a broader understanding of microbial diversity and adaptation." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium saskatchewanense rod 32 mesophilic 220927 LQPR00000000.1 Bac0013454 Mycobacterium sherrisii strain ATCC BAA-832 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sherrisii 243061 LQPT00000000.1 Bac0013455 Mycolicibacillus trivialis strain DSM 44153 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacillus Mycolicibacillus trivialis 1798 LQPZ00000000.1 Bac0013456 Weissella sp. DD23 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella sp. DD23 microaerophile 1777865 LQQL00000000.1 Bac0013457 Paenibacillus jamilae strain CN9 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus jamilae 114136 LQQX00000000.1 Bac0013458 Streptococcus gordonii strain DD07 "Streptococcus gordonii strain DD07 is a Gram-positive, coccoid bacterium that typically forms chains or pairs, exhibiting a characteristic morphology associated with the genus Streptococcus. This strain thrives optimally at 37.0°C, which aligns with its habitat as a host-associated microbe, suggesting an adaptation to the physiological conditions of its host. As a facultative anaerobe, S. gordonii strain DD07 can grow in both aerobic and anaerobic environments, allowing it to colonize various niches within the host associated with oral and systemic environments.↵↵The ability of S. gordonii strain DD07 to exist in chains or pairs may facilitate its interactions with host tissues and other microbial species, potentially contributing to its role in biofilm formation in the oral cavity. This characteristic is significant in understanding its ecological niche, particularly in the context of oral health, where it may participate in the complex microbial communities that inhabit the mouth. The strain's facultative anaerobic metabolism also implies versatility in energy acquisition, enabling it to adapt to fluctuating oxygen levels within its host.↵↵Overall, the traits of Streptococcus gordonii strain DD07 suggest a well-adapted organism capable of thriving in host-associated environments, with implications for its interactions within oral biofilms and its potential roles in maintaining or disrupting oral health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1302 LQRC00000000.1 Bac0013459 Streptococcus sp. DD10 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. DD10 1777878 LQRE00000000.1 Bac0013460 Streptococcus sp. DD13 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. DD13 1777881 LQRH00000000.1 Bac0013461 Escherichia coli strain GN02175 6_arrow "Escherichia coli strain GN02175 6_arrow is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in environments with or without oxygen. Optimal growth occurs at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting an adaptation to host-associated habitats.↵↵As a member of the Enterobacteriaceae family, E. coli is known for its versatile metabolic capabilities, which enable it to occupy various niches within the intestinal tract of warm-blooded animals. The facultative anaerobic nature of strain GN02175 6_arrow implies it can utilize both aerobic respiration and fermentation pathways, allowing it to exploit different substrates depending on the availability of oxygen. This adaptability may contribute to its survival and proliferation within the host environment, where fluctuations in oxygen levels can occur due to metabolic activity or host physiological conditions.↵↵The ecological significance of strain GN02175 6_arrow may extend beyond its role in the gut microbiome, as its presence in host-associated habitats could influence nutrient cycling and microbial community dynamics. This strain exemplifies the complex interactions between microbial inhabitants and their hosts, highlighting the potential for E. coli strains to play roles in both health and disease within their ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LQSL00000000.2 Bac0013462 Escherichia coli strain GN02766 000001F_arrow "Escherichia coli strain GN02766 000001F_arrow is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells, demonstrating a versatile morphology that is characteristic of the species. This strain thrives optimally at 37.0 °C, which aligns with the physiological temperature of many host organisms, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain GN02766 000001F_arrow is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to inhabit a variety of environments within the host. ↵↵The combination of these traits suggests a potential for metabolic flexibility, enabling the strain to adapt to varying oxygen levels commonly found in the gastrointestinal tract of mammals. This adaptability may provide insights into the strain's role in nutrient assimilation and microbial community dynamics within host-associated environments. Further investigation into the specific interactions and functions of this strain in its native habitat could shed light on its ecological significance within the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LQVG00000000.2 Bac0013463 Domibacillus aminovorans strain DSM 4337 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Domibacillus Domibacillus aminovorans 29332 LQWZ00000000.1 Bac0013464 Clavibacter michiganensis subsp. tessellarius strain DOAB 609 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter tessellarius 31965 LQXA00000000.1 Bac0013465 Maricaulis sp. W15 Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Maricaulis Maricaulis sp. W15 1772333 LQXG00000000.1 Bac0013466 Marinobacter sp. C18 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. C18 1772288 LQXJ00000000.1 Bac0013467 Vibrio barjaei strain 3062 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio barjaei 1676683 LQXO00000000.2 Bac0013468 Mycobacteroides immunogenum strain CD11-6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides immunogenum 83262 LQYE00000000.1 Bac0013469 Streptomyces sp. WAC04657 WAC04657_unitig_4 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC04657 1779145 LQYF00000000.1 Bac0013470 Heyndrickxia coagulans strain B4098 "Heyndrickxia coagulans strain B4098 is a Gram-positive, rod-shaped bacterium exhibiting the ability to sporulate, which is a key feature for its survival in diverse environments. This strain is classified as a chemoheterotroph, indicating that it obtains energy through the consumption of organic compounds, a trait that reflects its adaptability to various habitats. Optimal growth occurs at a temperature of 60.0°C, suggesting that this microbe may thrive in thermophilic conditions typically associated with hot environments, such as geothermal areas or compost heaps.↵↵As a facultative anaerobe, Heyndrickxia coagulans strain B4098 can grow in both the presence and absence of oxygen, further enhancing its ecological versatility. This capability allows the microbe to exploit a range of ecological niches, potentially including anaerobic environments where other microbes might not survive. The ability to form spores may also provide resilience against environmental stresses, contributing to its persistence in fluctuating conditions. ↵↵Overall, the traits of Heyndrickxia coagulans strain B4098 indicate its role as a resilient organism capable of adapting to extreme environments, underscoring its potential importance in biogeochemical cycles, particularly in thermophilic ecosystems where organic matter decomposition occurs." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia coagulans Positive Rod Yes 1 Facultative anaerobe 60 Chemoheterotroph Mesophilic Multiple Sporulating Non-pathogenic 1398 LQYG00000000.1 Bac0013471 Heyndrickxia coagulans strain B4099 "Heyndrickxia coagulans strain B4099 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrives optimally at a temperature of 60.0 °C. As a chemoheterotroph, this strain derives its energy from organic compounds, allowing it to inhabit a variety of environments. Its facultative anaerobic nature indicates that it can grow in both the presence and absence of oxygen, providing it with metabolic flexibility that may contribute to its survival in diverse habitats.↵↵The capability to sporulate suggests that Heyndrickxia coagulans strain B4099 can withstand unfavorable conditions, which might include extremes of temperature or nutrient scarcity. This trait is particularly advantageous in habitats where environmental conditions fluctuate, potentially allowing the strain to persist until more favorable conditions arise. The optimal growth temperature of 60.0 °C suggests a preference for thermophilic environments, which could include hot springs or compost piles where organic matter is abundant.↵↵Overall, the combination of its Gram-positive structure, sporulation ability, and metabolic versatility positions Heyndrickxia coagulans strain B4099 as a resilient inhabitant of thermophilic and variable ecological niches, highlighting its potential role in nutrient cycling within those ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia coagulans Positive Rod Yes 1 Facultative anaerobe 60 Chemoheterotroph Mesophilic Multiple Sporulating Non-pathogenic 1398 LQYI00000000.1 Bac0013472 Parageobacillus caldoxylosilyticus strain B4119 "Parageobacillus caldoxylosilyticus strain B4119 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores, a trait that enhances its survival in various environmental conditions. This strain exhibits optimal growth at a temperature of 45.0°C, indicating a preference for thermophilic habitats. The spore-forming capability suggests that P. caldoxylosilyticus is well-adapted to withstand extreme conditions, including heat and desiccation.↵↵The thermophilic nature of this organism hints at its potential ecological roles in high-temperature environments, such as compost heaps or geothermal areas, where it may contribute to the degradation of organic materials. Its ability to form spores may also facilitate its persistence in fluctuating environments, allowing it to remain viable during periods of nutrient scarcity or adverse conditions. Understanding the traits of Parageobacillus caldoxylosilyticus strain B4119 can provide insights into its functional contributions to microbial communities in thermophilic ecosystems, as well as its potential applications in biotechnology, particularly in processes that require heat stability." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus caldoxylosilyticus Gram-positive rod 45 thermophilic spore-forming 81408 LQYS00000000.1 Bac0013473 Caldibacillus debilis strain B4135 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus debilis 301148 LQYT00000000.1 Bac0013474 Parageobacillus toebii strain B4110 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus toebii 153151 LQYW00000000.1 Bac0013475 Geobacillus sp. B4113_201601 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. B4113_201601 1586290 LQYX00000000.1 Bac0013476 Geobacillus stearothermophilus strain B4114 "Geobacillus stearothermophilus strain B4114 is a variable Gram-staining, rod-shaped bacterium primarily found in active volcanic areas and in spoiled canned food, indicating its resilience in extreme environments. This organism is classified as an aerobic microbe, necessitating oxygen for growth and metabolism. Its ability to thrive in high-temperature environments, alongside its presence in food spoilage scenarios, highlights its thermophilic nature and its potential role in altering food safety dynamics under specific conditions.↵↵The habitat of G. stearothermophilus strain B4114 suggests a capacity for survival and proliferation in both natural geothermal settings and anthropogenic environments where food preservation fails. Such characteristics underscore the organism’s adaptability and may provide insights into microbial interactions in extreme habitats, particularly in relation to nutrient cycling and the breakdown of organic matter. This adaptability is significant not only for understanding the ecological roles of thermophilic bacteria but also for exploring their applications in biotechnological processes, such as composting and waste management, where high temperatures prevail." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe thermophilic active volcanic area; spoiled canned food 1422 LQYY00000000.1 Bac0013477 Streptococcus oralis strain DD17 "Streptococcus oralis strain DD17 is a Gram-positive cocci bacterium that typically arranges itself in pairs or chains. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, which may facilitate its survival in varied host-associated habitats. ↵↵S. oralis is commonly found in the human oral cavity, where it plays a role in the complex microbiota that resides in this environment. While the specific ecological interactions of strain DD17 have not been detailed, the presence of S. oralis species in the oral microbiome suggests potential involvement in maintaining oral health, competing with pathogenic organisms, and contributing to the metabolic processes within the biofilm structure of dental plaque.↵↵The ability to adapt to different oxygen levels may also allow S. oralis strain DD17 to occupy niches within the oral cavity that are subject to fluctuating oxygen conditions, such as those found in deeper periodontal pockets. This adaptability highlights the strain's potential significance in microbial dynamics and its role in the overall health of the host-associated microbiome. Further studies could elucidate the specific interactions of S. oralis strain DD17 with other microbial species and its contributions to oral health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 LQZE00000000.1 Bac0013478 Roseivirga ehrenbergii strain KMM 6017 Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga ehrenbergii aerobic 29 mesophilic non-spore-forming 279360 LQZQ00000000.1 Bac0013479 Hoeflea olei strain JC234 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Parahoeflea Parahoeflea olei 1480615 LQZT00000000.1 Bac0013480 Salmonella enterica subsp. enterica serovar Daytona strain "Salmonella enterica subsp. enterica serovar Daytona strain is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This strain optimally grows at 37.0°C, reflecting its adaptation to host-associated environments where it likely encounters temperatures similar to those of warm-blooded animals. As a chemoorganotroph, this microbe utilizes organic compounds as its energy source, which is consistent with its habitat that often involves association with living hosts.↵↵The microaerophilic nature of this strain indicates that it thrives in environments with reduced oxygen levels, which may be encountered in specific niches within the host's gastrointestinal tract. The combination of these traits suggests that Salmonella enterica serovar Daytona strain is well-equipped to exploit the conditions present within its host, potentially affecting nutrient absorption and microbial community structure. Understanding its physiological characteristics can provide insights into its role within the microbiome and its interactions with both the host and other microbial species, highlighting the complex dynamics of host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 LR133909.1 Bac0013481 Salmonella enterica subsp. enterica strain NCTC6754 "Salmonella enterica subsp. enterica strain NCTC6754 is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as single cells. This strain thrives optimally at 37.0 °C, reflecting its adaptation to host-associated environments, where it likely encounters physiological temperatures. As a chemoorganotroph, S. enterica NCTC6754 derives its energy from organic compounds, which aligns with its habitat, typically associated with various hosts.↵↵The microaerophilic nature of this strain indicates that it requires lower levels of oxygen for growth compared to atmospheric concentrations, a trait that may facilitate its survival in the oxygen-limited niches within host organisms. Such conditions are often encountered in the gastrointestinal tract, where similar bacteria may reside. ↵↵Understanding the traits of S. enterica NCTC6754 contributes to a broader comprehension of the metabolic capabilities and ecological roles of Salmonella species. The microaerophilic requirement, in conjunction with its chemoorganotrophic lifestyle, suggests that this strain may play a complex role in the microbial ecology of the host, potentially influencing nutrient cycling and interactions with other microbial inhabitants. This highlights the importance of studying specific strains to elucidate their contributions to host-associated microbiomes and their potential impacts on host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 LR134190.1 Bac0013482 Mycoplasma fermentans strain NCTC10117 "Mycoplasma fermentans strain NCTC10117 is a Gram-negative bacterium recognized for its presence in various human habitats, including the genitourinary tract, peripheral blood leucocytes, throat, and urine. As a member of the Mycoplasma genus, this strain is characterized by its lack of a cell wall, which influences its morphology and susceptibility to antibiotics that target cell wall synthesis.↵↵The habitat of Mycoplasma fermentans strain NCTC10117 suggests its potential role in the human microbiome, particularly in areas associated with mucosal surfaces. Its presence in peripheral blood leucocytes may indicate a capacity for interaction with the immune system, although the implications of this interaction require further investigation. The strain's isolation from both the throat and urine also raises questions about its possible involvement in upper respiratory or genitourinary tract conditions, though specific pathogenic characteristics remain to be elucidated.↵↵Additionally, the ecological niche of Mycoplasma fermentans strain NCTC10117 highlights its adaptability to various host environments. Its ability to inhabit both the upper respiratory tract and the genitourinary system suggests a versatile lifestyle that could allow it to play a role in microbial community dynamics, potentially influencing the health status of the host. Further studies are warranted to explore the functional significance of this strain in human health and disease contexts." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans Negative genitourinary tract; peripheral blood leucocytes; throat; urine Human 2115 LR214955.1 Bac0013483 Tuwongella immobilis MBLW1 Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Tuwongella Tuwongella immobilis aerobic 692036 LR586016.1 Bac0013484 Microbacterium laevaniformans strain LCDC 91-0039 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium laevaniformans 36807 LRAD00000000.1 Bac0013485 Caballeronia megalochromosomata strain JC2949 10.BMJC2949.1.00285 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia megalochromosomata 1399969 LRBF00000000.1 Bac0013486 Enterobacter genomosp. O strain GN04363 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter genomosp. O 2364150 LRCR00000000.1 Bac0013487 Clostridium butyricum strain 300064 "Clostridium butyricum strain 300064 is a Gram-positive, anaerobic bacterium primarily found in the rumen of ruminant animals. This strain is part of a genus known for its ability to produce butyrate, a short-chain fatty acid that plays a crucial role in energy metabolism in various organisms. As an anaerobe, C. butyricum strain 300064 thrives in oxygen-free environments, which is characteristic of the rumen ecosystem where it contributes to the complex microbial fermentation processes associated with the digestion of fibrous plant materials.↵↵The ability of C. butyricum strain 300064 to ferment carbohydrates can lead to the production of butyrate and other fermentation products, which are essential for maintaining the health of the rumen and the overall well-being of the host. This bacterium may also interact with other microbial populations within the rumen, participating in a dynamic ecosystem that influences nutrient availability and host metabolism.↵↵The role of C. butyricum strain 300064 in the rumen highlights its potential significance in the digestive efficiency of ruminants, suggesting that understanding its metabolic pathways and interactions could offer insights into improving livestock health and productivity. Furthermore, the unique adaptations of this anaerobic bacterium to its habitat underscore the intricate relationships within the rumen microbiome, where specialized microorganisms collaborate to optimize the breakdown of complex substrates." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium butyricum Positive Anaerobe mesophilic rumen 1492 LRDH00000000.1 Bac0013488 Acinetobacter baumannii strain AB3638 "Acinetobacter baumannii strain AB3638 is a Gram-negative, rod-shaped bacterium that exists as single cells and thrives optimally at 37.0°C. As a chemoheterotrophic organism, it derives its energy from organic compounds, allowing it to inhabit a variety of environments. This strain is categorized as an aerobe, indicating that it requires oxygen for its metabolic processes.↵↵The versatility of A. baumannii strain AB3638 to occupy multiple habitats underscores its potential resilience in fluctuating ecological conditions, which may include both natural and anthropogenic environments. This adaptability may contribute to its persistence in clinical settings, although the specific ecological niches occupied by this strain have not been detailed. The ability to grow in diverse environments suggests that A. baumannii strain AB3638 could play a role in nutrient cycling and microbial community dynamics in its habitats.↵↵Understanding the traits of A. baumannii strain AB3638 may provide insights into its ecological interactions and functional roles within microbial communities, as well as its potential implications in health-related contexts. Further research into its environmental adaptability and resource utilization could shed light on the broader ecological impact of this organism." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 LRDW00000000.1 Bac0013489 Fictibacillus phosphorivorans strain P7IIIA Bacillati Bacillota Bacilli Caryophanales Fictibacillaceae Fictibacillus Fictibacillus phosphorivorans 1221500 LRFC00000000.1 Bac0013490 Bacteroides stercoris strain CL09T03C01 "Bacteroides stercoris strain CL09T03C01 is a Gram-negative anaerobic bacterium that is part of the diverse microbiota typically found in the gastrointestinal tract of mammals. As an anaerobe, this strain thrives in oxygen-deprived environments, which aligns with the general characteristics of the Bacteroides genus, known for its prevalence in the intestines where oxygen levels are low. ↵↵The Gram-negative nature of B. stercoris strain CL09T03C01 indicates that it possesses a thin peptidoglycan layer and an outer membrane, which can contribute to its resilience in various environments and its interactions with the host's immune system. This structural feature is essential for the bacterium's survival in the competitive gut microbiome, where it plays a role in the metabolism of complex carbohydrates and the fermentation of dietary fibers, ultimately contributing to gut health and homeostasis.↵↵In addition to its physiological traits, the presence of B. stercoris strain CL09T03C01 highlights the importance of anaerobic microorganisms in nutrient cycling within the gut. These bacteria are key players in the breakdown of indigestible polysaccharides, producing short-chain fatty acids that serve as an energy source for intestinal cells and contribute to the overall health of the host. Thus, B. stercoris strain CL09T03C01 exemplifies the intricate relationships between anaerobic bacteria and their mammalian hosts, emphasizing the crucial role of microbiota in digestive processes and metabolic health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 LRGC00000000.1 Bac0013491 Haloarcula sp. K1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula sp. K1 1622207 LRHL00000000.1 Bac0013492 Duganella sp. HH105 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. HH105 1781067 LRHV00000000.1 Bac0013493 Oerskovia enterophila strain VJag Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Oerskovia Oerskovia enterophila aerobic / microaerophile 43678 LRIE00000000.1 Bac0013494 Escherichia coli strain 102928 jtg7180000001263f_7180000001325f "Escherichia coli strain 102928 jtg7180000001263f_7180000001325f is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain displays a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which is characteristic of many E. coli strains. It is optimally adapted to grow at a temperature of 37.0°C, aligning with the normal human body temperature and suggesting a potential association with host organisms.↵↵The habitat of this strain is categorized as host-associated, indicating a likely symbiotic or commensal relationship with its host. Such associations can play significant roles in the maintenance of gut microbiota, influencing various physiological processes within the host, including digestion and immune response. The adaptability of E. coli strain 102928 to fluctuating oxygen levels may facilitate its persistence in diverse microenvironments within the host, further underscoring its ecological versatility. Overall, this strain exemplifies the complex interactions that bacteria can have with their hosts, contributing to the dynamic balance of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 LRLE00000000.1 Bac0013495 Micromonospora rifamycinica strain AM105 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora rifamycinica 291594 LRMV00000000.1 Bac0013496 Roseivirga spongicola strain UST030701-084 "Roseivirga spongicola strain UST030701-084 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0 °C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for survival and reproduction under its environmental conditions. ↵↵The specific morphological and physiological traits of Roseivirga spongicola strain UST030701-084 indicate its adaptation to particular ecological niches, potentially including marine environments, given the genus Roseivirga's association with such habitats. The aerobic requirement implies that this strain may play a role in biogeochemical cycles, particularly in the degradation of organic matter in oxygen-rich environments. ↵↵Understanding the traits of Roseivirga spongicola strain UST030701-084 could provide insights into its ecological functions and interactions within its habitat. The non-spore-forming characteristic may influence its resilience to environmental stressors compared to spore-forming bacteria, potentially affecting its ecological role and competition dynamics in microbial communities. Further investigation into the metabolic pathways and ecological interactions of this strain could enhance our understanding of its contributions to the microbial diversity and functionality of its native habitat." Pseudomonadati Bacteroidota Cytophagia Cytophagales Roseivirgaceae Roseivirga Roseivirga spongicola Gram-negative rod motile aerobic 25 mesophilic non-spore-forming 333140 LRPC00000000.1 Bac0013497 Acinetobacter lactucae strain NRRL B-41902 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lactucae 1785128 LRPE00000000.1 Bac0013498 Bacillus cereus strain PE8-121b "Bacillus cereus strain PE8-121b is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain thrives in various habitats, demonstrating its adaptability to diverse environmental conditions. It is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. The optimal growth temperature for Bacillus cereus strain PE8-121b is 25.0°C, which suggests a preference for moderate thermal environments.↵↵The ability of Bacillus cereus to form chains may facilitate its colonization and survival in different ecological niches, potentially enhancing its interactions within microbial communities. The strain’s aerobic nature allows it to utilize oxygen as a terminal electron acceptor in respiration, which may contribute to its metabolic versatility in various habitats. This adaptability underscores the potential ecological roles that Bacillus cereus strain PE8-121b might play in nutrient cycling and decomposition processes within its environment." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LRPI00000000.1 Bac0013499 Anaerococcus hydrogenalis strain MJR7738A "Anaerococcus hydrogenalis strain MJR7738A is a Gram-positive cocci that is classified as an obligate anaerobe. This indicates that the strain thrives in environments devoid of oxygen, which is characteristic of many members of the genus Anaerococcus. The coccoid morphology of this strain suggests a spherical shape, which is typical for this group of bacteria.↵↵As an obligate anaerobe, Anaerococcus hydrogenalis strain MJR7738A relies on fermentation or other anaerobic metabolic pathways for energy production, making it well-adapted to environments such as the human gastrointestinal tract or other anoxic habitats where oxygen is limited or absent. The ability to survive and proliferate in such conditions may provide insights into its potential role in microbial communities, particularly in relation to gut health and the maintenance of a balanced microbiome.↵↵The ecological significance of Anaerococcus hydrogenalis strain MJR7738A may extend to its interactions with other gut microbiota, contributing to the overall metabolic processes within anaerobic environments. Understanding the specific roles of this strain within its ecological niche could enhance our knowledge of microbial dynamics and the importance of anaerobic bacteria in various biological systems." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus hydrogenalis Positive Cocci Obligate anaerobe 33029 LRPL00000000.1 Bac0013500 Bifidobacterium breve strain GED8481 "Bifidobacterium breve strain GED8481 is a Gram-positive, anaerobic bacterium commonly found in the gastrointestinal tract, particularly within the gut microbiota of healthy newborns and infants. This strain is notably present in human breast milk, contributing to the establishment and maintenance of the infant gut microbiome. Bifidobacterium breve, including strain GED8481, plays a crucial role in the digestion of oligosaccharides present in breast milk, facilitating the development of a balanced gut flora in infants. ↵↵The anaerobic nature of Bifidobacterium breve strain GED8481 allows it to thrive in the oxygen-poor environment of the human intestine, where it can outcompete other microbial species, thus supporting gut health. Its presence is particularly significant in the early stages of life, as it may influence immune system development and protect against gastrointestinal infections. ↵↵Additionally, the prevalence of Bifidobacterium breve strain GED8481 in breast milk highlights its potential role in modulating the infant's gut microbiota composition, which may have lasting implications for the host's overall health. This strain exemplifies the intricate relationship between maternal diet, infant microbiota development, and subsequent health outcomes, emphasizing the importance of breastfeeding in shaping the early microbial landscape of human infants." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 LRPP00000000.1 Bac0013501 Bifidobacterium longum strain CMW7750 "Bifidobacterium longum strain CMW7750 is a Gram-positive, non-sporulating bacterium characterized by its rod shape and varying cell arrangements, which include clusters, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for the physiological conditions found within its host-associated habitat. As an anaerobic organism, B. longum CMW7750 requires environments devoid of oxygen for growth and metabolic activity.↵↵Bifidobacterium longum strains are often associated with the gastrointestinal tracts of humans and other mammals, where they play a crucial role in maintaining gut health and contributing to the microbial balance. The specific strain CMW7750 may exhibit beneficial properties related to the fermentation of dietary fibers, producing short-chain fatty acids that can influence host metabolism and immune responses. This indicates its potential importance in the context of gut microbiota composition and function. ↵↵Understanding the traits of Bifidobacterium longum strain CMW7750 provides valuable insight into its ecological niche and metabolic capabilities, shedding light on its role in the complex interplay of host-microbe interactions within the gastrointestinal ecosystem." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 LRPQ00000000.1 Bac0013502 Enterococcus faecium strain MJR8396B "Enterococcus faecium strain MJR8396B is a Gram-positive cocci that thrives in anaerobic conditions and has been isolated from fermented mare milk. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment, which is characteristic of many Enterococcus species. ↵↵The habitat of E. faecium strain MJR8396B in fermented mare milk suggests its potential role in dairy fermentation processes, where it may contribute to the development of flavor and texture in fermented products. Its presence in this specific habitat may also indicate a symbiotic relationship with other microbial communities involved in the fermentation process. ↵↵Further studies of E. faecium strain MJR8396B could elucidate its interactions with other microorganisms in fermented dairy environments, as well as its metabolic capabilities that facilitate fermentation. Understanding these dynamics may provide insights into the microbial ecology of fermented foods, highlighting the importance of Enterococcus species in traditional fermentation practices." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 LRPV00000000.1 Bac0013503 Gardnerella pickettii strain GED7275B "Gardnerella pickettii strain GED7275B is a Gram-positive, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This strain thrives optimally at a temperature of 37.0°C, indicating a potential adaptation to human-associated environments, as this temperature aligns closely with the average human body temperature. ↵↵As an anaerobic organism, G. pickettii strain GED7275B is adapted to environments devoid of oxygen, which is characteristic of many host-associated microbes. Its habitat within host organisms suggests a potential role in the complex microbial communities that inhabit various niches within the host. The nonsporulating nature of this strain may indicate a reliance on stable conditions within the host environment for survival and reproduction, as the ability to form spores is often a strategy employed by some bacteria to withstand adverse conditions.↵↵Given its association with host environments and anaerobic metabolism, Gardnerella pickettii strain GED7275B may contribute to the intricate balance of microbial populations that are essential for maintaining host health. Further investigation into its specific interactions within the host microbiome could provide valuable insights into its ecological functions and potential contributions to host physiology." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella pickettii Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating 2914924 LRPZ00000000.1 Bac0013504 Gardnerella vaginalis strain GED7760B "Gardnerella vaginalis strain GED7760B is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic conditions. This strain is optimally adapted to a temperature of 37.0°C, aligning with the typical physiological conditions of its host environment. Gardnerella vaginalis is primarily associated with the human host, indicating its potential role in the microbial communities found within specific niches, such as the urogenital tract.↵↵As a host-associated microbe, Gardnerella vaginalis strain GED7760B may contribute to the complex interplay of microbial populations that influence host health. Its anaerobic requirement suggests it occupies environments where oxygen is limited, which is characteristic of certain body sites, including the vagina, where it coexists with other microbial species. The presence of this strain in the host-associated microbiome may reflect its adaptation to specific metabolic pathways that allow it to utilize host-derived substrates for energy.↵↵Further research into the ecological roles and interactions of Gardnerella vaginalis strain GED7760B within its habitat could provide valuable insights into its contributions to microbial homeostasis and its potential implications for host health. Understanding such dynamics could elucidate the significance of this strain in maintaining or disrupting microbial balance in its associated environment." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 LRQA00000000.1 Bac0013505 Gardnerella vaginalis strain PSS_7772B "Gardnerella vaginalis strain PSS_7772B is a Gram-positive, rod-shaped bacterium that exhibits a nonsporulating phenotype and thrives in anaerobic environments. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which it metabolizes in the absence of oxygen. The optimal growth temperature for G. vaginalis strain PSS_7772B is 37.0°C, reflecting its adaptation to the human body, where it is typically found in host-associated habitats.↵↵The presence of Gardnerella vaginalis in the human microbiome, particularly in the vaginal flora, suggests that it may play a role in the complex microbial community that influences reproductive health. Its anaerobic metabolism could facilitate interactions with other microbial species in similar environments, potentially impacting local ecological dynamics. Understanding the specific roles and interactions of G. vaginalis strain PSS_7772B within the host-associated microbiome could provide insights into the balance of healthy microbial communities and the factors that contribute to dysbiosis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 LRQB00000000.1 Bac0013506 Lactobacillus gasseri strain PSS7772D "Lactobacillus gasseri strain PSS7772D is a Gram-positive, nonsporulating rod-shaped bacterium that typically arranges itself in chains or as singles. This strain thrives optimally at a temperature of 25.0°C and exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen levels in its environment. As a host-associated microbe, L. gasseri PSS7772D likely plays a significant role in the microbiota of its host, contributing to various metabolic processes and potentially influencing host health.↵↵The ability to grow in both aerobic and anaerobic conditions suggests that L. gasseri strain PSS7772D may be well adapted to environments where oxygen availability fluctuates, such as the gastrointestinal tract of mammals. This adaptability may enhance its survival and functional capacity within its host, where it can interact with the immune system and other microbial populations. Given its rod shape and chain arrangement, this strain may also exhibit specific behaviors related to biofilm formation, which can further facilitate its persistence and functional roles in the host-associated ecosystem. Understanding the ecological dynamics of L. gasseri PSS7772D provides valuable insights into the complex interplay between host-associated microbes and their environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains - Singles Nonsporulating 1596 LRQD00000000.1 Bac0013507 Prevotella corporis strain MJR7716 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella corporis anaerobic 28128 LRQG00000000.1 Bac0013508 Streptococcus mitis strain CMW7705B "Streptococcus mitis strain CMW7705B is a Gram-positive, nonsporulating coccus that typically arranges itself in chains and pairs. This bacterium is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Strain CMW7705B is associated with host organisms, reflecting its potential role as a commensal microbe within the microbiota of various hosts.↵↵The characteristic chain and pair formation of S. mitis suggests a communal lifestyle, which may facilitate interactions within microbial communities. Given its facultative anaerobic nature, this strain can adapt to varying oxygen levels, allowing it to colonize diverse ecological niches within the host. Such adaptability may contribute to its persistence in host-associated environments, where oxygen availability can fluctuate.↵↵Furthermore, the presence of S. mitis in host-associated habitats underscores its ecological significance, as it may participate in microbial interactions that influence the health and stability of the host microbiome. This strain, along with its relatives, could play a role in competitive dynamics with other microorganisms, potentially affecting nutrient availability and microbial community structure. Understanding the specific interactions of S. mitis strain CMW7705B within its ecological context may reveal insights into the maintenance of host health and the balance of microbial populations in various environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 LRQR00000000.1 Bac0013509 Streptococcus salivarius strain GED7778A "Streptococcus salivarius strain GED7778A is a Gram-positive cocci bacterium that typically arranges itself in chains and pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. salivarius strain GED7778A is commonly found in the oral cavity, where it plays a role in maintaining microbial balance and potentially contributing to the health of its host.↵↵Given its habitat and cell arrangement, S. salivarius strain GED7778A may be involved in various interactions within the oral microbiome, including the modulation of other microbial communities. Its facultative anaerobic nature suggests that it can adapt to fluctuating oxygen levels, which is characteristic of the dynamic environment of the human mouth. These traits highlight the strain's potential importance in oral health and its possible role in preventing the colonization of pathogenic microorganisms by competing for resources and space. Further research could elucidate the specifics of its interactions within the oral microbiome, providing insights into its contributions to host health and disease prevention." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 LRQS00000000.2 Bac0013510 Veillonella atypica strain CMW7756B "Veillonella atypica strain CMW7756B is a Gram-negative anaerobic bacterium that is primarily found in the oral cavity. This strain is part of the genus Veillonella, which is known for its role in the oral microbiome and its association with various microbial communities within the human mouth. As an anaerobe, Veillonella atypica strain CMW7756B thrives in oxygen-depleted environments, making it well-suited for the diverse ecological niches present in the oral cavity, where it may contribute to the degradation of metabolic byproducts of other bacteria, particularly those that produce lactic acid.↵↵The presence of Veillonella atypica in the oral cavity highlights its potential role in maintaining microbial balance and possibly influencing oral health. By utilizing lactic acid produced by other bacteria, Veillonella atypica may help mitigate acid accumulation and subsequent enamel demineralization, thus playing a protective role in the oral ecosystem. This interaction underlines the complexity of microbial interactions within the oral cavity and suggests that Veillonella atypica could be an important player in the dynamic relationships that define oral health and disease. Further studies may elucidate the specific contributions of this strain to oral microbiota composition and its potential implications for oral health management." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella atypica Negative Anaerobe oral cavity 39777 LRQT00000000.1 Bac0013511 Ferrovum myxofaciens strain Z-31 Pseudomonadati Pseudomonadota Betaproteobacteria Ferrovales Ferrovaceae Ferrovum Ferrovum myxofaciens 416213 LRRD00000000.1 Bac0013512 Termitidicoccus mucosus strain TSB47 Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus 1184151 LRRQ00000000.1 Bac0013513 Candidatus Thorarchaeota archaeon SMTZ-45 WORSMTZ_9997 Promethearchaeati Candidatus Thorarchaeota Candidatus Thorarchaeota archaeon SMTZ-45 1706443 LRSM00000000.1 Bac0013514 Frankia sp. EI5c UG55_1159 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. EI5c 683316 LRTK00000000.1 Bac0013515 Gardnerella vaginalis strain N144 "Gardnerella vaginalis strain N144 is a nonsporulating, Gram-positive rod bacterium that exhibits anaerobic metabolism and acts as a chemoheterotroph, utilizing organic compounds as its energy source. This strain thrives at an optimal temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat, particularly within the human urogenital tract. ↵↵As a member of the Gardnerella genus, this strain is often associated with the complex microbiota of the vagina, where it plays a role in maintaining the microbial balance. The anaerobic requirement indicates that Gardnerella vaginalis strain N144 likely occupies niches within the host that are low in oxygen, which may influence its interactions with other microbial species in the vaginal ecosystem. ↵↵Understanding the traits of Gardnerella vaginalis strain N144 can provide insights into its potential roles in health and disease within its host environment. Its adaptation to anaerobic conditions highlights the importance of oxygen gradients in microbial ecology, particularly in human-associated habitats where varying oxygen levels can shape community dynamics and influence microbial interactions. Thus, the study of this strain may reveal critical information about the maintenance of vaginal microbiota and the implications for reproductive health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 LRTT00000000.1 Bac0013516 Anaerotignum neopropionicum strain DSM-3847 "Anaerotignum neopropionicum strain DSM-3847 is a Gram-negative, rod-shaped bacterium that exhibits the ability to form spores. As an organotrophic and chemotrophic microbe, it derives energy from organic compounds through various metabolic pathways. This trait enables the organism to thrive in anaerobic environments, where it can utilize organic substrates for growth and energy production.↵↵The spore-forming capability of A. neopropionicum suggests a potential for resilience under unfavorable conditions, allowing it to survive periods of nutrient depletion or other stressors. This characteristic is particularly relevant for its survival in complex microbial communities, where fluctuations in environmental conditions are common.↵↵Additionally, this strain's metabolic versatility may contribute to its role in biogeochemical cycles, particularly those involving organic matter degradation in anaerobic ecosystems. Such adaptations underline the potential significance of A. neopropionicum in various ecological niches, where it may participate in nutrient cycling and contribute to the overall functionality of microbial consortia.↵↵In summary, Anaerotignum neopropionicum strain DSM-3847 exemplifies a resilient, anaerobic microbe with distinctive metabolic traits that highlight its adaptability and ecological importance in organic matter decomposition processes." Bacillati Bacillota Clostridia Lachnospirales Anaerotignaceae Anaerotignum Anaerotignum neopropionicum Gram-negative rod organotroph; chemotroph spore-forming 36847 LRVM00000000.1 Bac0013517 Bacteroidales bacterium KA00344 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium KA00344 1497954 LSCT00000000.1 Bac0013518 Corynebacterium kroppenstedtii strain DNF00591 "Corynebacterium kroppenstedtii strain DNF00591 is a Gram-positive, non-spore-forming bacterium that exhibits microaerophilic growth, thriving optimally at a temperature of 37.0°C. As a member of the Corynebacterium genus, this strain shares characteristic features typically associated with this group, such as a distinct cell wall composition and metabolic capabilities that may be adapted to low oxygen environments.↵↵Its Gram-positive nature indicates the presence of a thick peptidoglycan layer, which can influence its resilience in certain environments and its interactions with host organisms. The non-spore-forming trait suggests that this strain relies on vegetative growth rather than sporulation to survive adverse conditions, potentially making it more susceptible to environmental stresses compared to spore-forming bacteria. The microaerophilic requirement indicates that C. kroppenstedtii strain DNF00591 may thrive in environments with limited oxygen, suggesting a possible adaptation to specific niches where oxygen levels are not conducive to aerobic growth.↵↵Given these traits, this strain may play a role in niche environments where low oxygen levels prevail, potentially influencing microbial community dynamics and interactions with other organisms. Understanding the physiological characteristics of C. kroppenstedtii strain DNF00591 provides insights into its ecological roles and potential applications in biotechnological or clinical settings, particularly in environments where microaerophilic conditions are present." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium kroppenstedtii Gram-positive non-motile microaerophile 37 mesophilic non-spore-forming 161879 LSCY00000000.1 Bac0013519 Parvimonas sp. KA00067 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Parvimonas sp. KA00067 1588755 LSDF00000000.1 Bac0013520 Prevotella amnii strain DNF00307 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella amnii 419005 LSDL00000000.1 Bac0013521 Veillonellaceae bacterium DNF00626 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonellaceae bacterium DNF00626 1588754 LSDR00000000.1 Bac0013522 Veillonellaceae bacterium DNF00751 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonellaceae bacterium DNF00751 1384082 LSDS00000000.1 Bac0013523 Bradyrhizobium neotropicale strain BR 10247 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium neotropicale 1497615 LSEF00000000.1 Bac0013524 Paenibacillus crassostreae strain LPB0068 PNBC_45 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus crassostreae 1763538 LSFN00000000.1 Bac0013525 Chryseobacterium sp. FP211-J200 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. FP211-J200 1792309 LSHB00000000.1 Bac0013526 Candidatus Gallionella acididurans Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellaceae Gallionella Candidatus Gallionella acididurans 1796491 LSLI00000000.1 Bac0013527 Bacillus spizizenii strain HUK15 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus spizizenii 96241 LSMU00000000.1 Bac0013528 Paraglaciecola hydrolytica strain S66 "Paraglaciecola hydrolytica strain S66 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environments, possibly reflecting its adaptation to specific ecological niches. ↵↵As a member of the genus Paraglaciecola, this microbe may play a role in biogeochemical cycles, particularly in the degradation of organic matter, given its hydrolytic capabilities implied by its name. The aerobic requirement indicates that P. hydrolytica strain S66 utilizes oxygen for its metabolic processes, which could be relevant in environments where oxygen is available and organic substrates are present.↵↵Understanding the characteristics of Paraglaciecola hydrolytica strain S66 contributes to our knowledge of microbial diversity in various ecosystems, particularly those influenced by glacial and cold marine environments. This strain exemplifies how specific adaptations can enable survival and function in niche habitats, highlighting the importance of studying microbial life in diverse ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Paraglaciecola hydrolytica Gram-negative rod motile aerobic 25 mesophilic non-spore-forming 1799789 LSNE00000000.1 Bac0013529 Legionella parisiensis strain DSM 19216 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella parisiensis microaerophile 45071 LSOG00000000.1 Bac0013530 Lactobacillus crispatus strain PSS7772C "Lactobacillus crispatus strain PSS7772C is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This strain does not undergo sporulation, which is a characteristic feature of many bacteria that allows them to survive extreme conditions. Optimal growth of L. crispatus PSS7772C occurs at a temperature of 37.0°C, suggesting its adaptation to warm-blooded hosts.↵↵As a member of the Lactobacillus genus, this strain is predominantly found in host-associated environments, indicating its potential role in symbiotic relationships within the microbiota of various organisms. The presence of this strain in host-associated habitats underscores its possible involvement in maintaining host health, particularly in the context of gut or vaginal microbiomes, where Lactobacillus species are known to play a crucial role in microbial balance and protection against pathogens.↵↵In summary, L. crispatus strain PSS7772C exemplifies key traits associated with beneficial bacteria, including its Gram-positive nature, nonsporulating status, and facultative anaerobic metabolism. Its ecological significance may extend beyond mere colonization, possibly contributing to the modulation of host immune responses and nutrient absorption, thereby enhancing the overall health of the host in which it resides." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LSQY00000000.1 Bac0013531 Streptococcus pasteurianus strain GED7275A "Streptococcus pasteurianus strain GED7275A is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolism. This strain is characterized by its spherical shape, which is typical of the genus Streptococcus. As a chemoheterotroph, S. pasteurianus strain GED7275A relies on organic compounds for both carbon and energy, suggesting a potential role in nutrient cycling within its environment.↵↵The absence of sporulation indicates that this strain may have adaptations that favor survival in stable environments rather than in fluctuating or extreme conditions where sporulation would be advantageous. The characteristics of S. pasteurianus strain GED7275A may position it as a contributor to the microbial community dynamics in habitats where other Streptococcus species are prevalent, such as in fermented foods or the oral microbiome. Further investigation into the ecological roles and interactions of this strain could provide insights into its functional contributions to microbial ecosystems and its potential applications in biotechnological processes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pasteurianus Positive Cocci No 1 Chemoheterotroph Nonsporulating 197614 LSRA00000000.1 Bac0013532 Theionarchaea archaeon DG-70 WOR1_52_54_9963 Methanobacteriati Methanobacteriota Theionarchaea Theionarchaea archaeon DG-70 1803813 LSSB00000000.1 Bac0013533 Lactiplantibacillus plantarum strain E2C2 "Lactiplantibacillus plantarum strain E2C2 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic growth. This strain thrives optimally at a temperature of 25.0°C and can inhabit a variety of environments, suggesting its versatility in different ecological niches. The ability to grow in the presence or absence of oxygen allows L. plantarum strain E2C2 to adapt to fluctuating conditions, which may be beneficial for its survival in diverse habitats, such as fermented foods and the gastrointestinal tracts of various organisms.↵↵The chain formation observed in this strain may facilitate its interactions within microbial communities, potentially enhancing its competitive advantage for resources in mixed-species environments. Additionally, the adaptability to various habitats underlines its potential role in fermentation processes and probiotic applications. These characteristics position L. plantarum strain E2C2 as a noteworthy microbe for further research into its functions within food systems and its contributions to microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 LSST00000000.1 Bac0013534 Corynebacterium stationis strain GA-15 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium stationis aerobic 29 mesophilic 1705 LSTQ00000000.1 Bac0013535 Sphingobium yanoikuyae strain CD09_2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium yanoikuyae 13690 LSTR00000000.1 Bac0013536 Microbacterium oleivorans strain CD11_3 "Microbacterium oleivorans strain CD11_3 is a Gram-positive bacterium that thrives in dust environments and exhibits aerobic metabolic capabilities. This strain is characterized by its ability to utilize oxygen for growth, which is indicative of its adaptation to aerobic conditions found in its natural habitat. ↵↵As a member of the genus Microbacterium, strain CD11_3 is part of a diverse group of actinobacteria known for their role in the degradation of organic compounds. Given its habitat in dust, this strain may play a crucial role in the microbial community by participating in the cycling of nutrients and organic matter in terrestrial ecosystems. The presence of such microbes in dust may also have implications for the health of the environment, as they can contribute to the breakdown of pollutants or organic debris, thereby influencing soil health and quality.↵↵In summary, Microbacterium oleivorans strain CD11_3 exemplifies the ecological versatility of actinobacteria in terrestrial environments, highlighting their potential contributions to nutrient cycling and ecosystem functioning within dust habitats. Further studies are warranted to explore the specific metabolic pathways and ecological interactions of this strain in its natural environment." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oleivorans Positive Aerobe dust 273677 LSTV00000000.1 Bac0013537 Pseudomonas putida strain INSali382 "Pseudomonas putida strain INSali382 is a nonsporulating, Gram-negative bacterium characterized by its rod shape and arrangement in singles. This strain is a heterotrophic organism, utilizing organic compounds as its energy source, which is consistent with its natural habitat in soil and wastewater environments. Pseudomonas putida strains are known for their metabolic versatility, and strain INSali382 is presumed to exhibit similar traits, allowing it to adapt to various ecological niches. ↵↵As a facultative anaerobe, Pseudomonas putida strain INSali382 can thrive in both aerobic and anaerobic conditions, which enhances its survival and functional capabilities in diverse environmental scenarios. This adaptability may contribute to its potential applications in bioremediation processes, where the breakdown of pollutants in contaminated soil and wastewater is critical. ↵↵The ability of Pseudomonas putida strains to metabolize a wide range of organic compounds underscores their ecological role in nutrient cycling and organic matter decomposition in their natural habitats. Further investigation into the biochemical pathways utilized by strain INSali382 could provide insights into its functional contributions within microbial communities in soil and wastewater ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 LSUZ00000000.1 Bac0013538 Brucella anthropi strain FRAF13 "Brucella anthropi strain FRAF13 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic growth. This strain, like other members of the Brucella genus, is characterized by its small cell size and specific metabolic requirements, which are typical for aerobic organisms. The Gram-negative classification indicates that the bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a feature that may influence its interactions with the environment and other microorganisms.↵↵The terrestrial habitat suggests that Brucella anthropi strain FRAF13 may be involved in soil ecosystems, potentially participating in nutrient cycling and interacting with various soil-dwelling organisms. The aerobic nature of this strain implies a reliance on oxygen for metabolic processes, which could shape its ecological role, including potential interactions with aerobic decomposers and plant roots.↵↵Further investigations into the physiological and ecological roles of Brucella anthropi strain FRAF13 may reveal its contributions to soil health and dynamics. Given the inherent adaptability of many bacteria within the Brucella genus, this strain may provide insights into microbial resilience and the mechanisms by which terrestrial microbes respond to environmental changes. Understanding its ecological niche could enhance our knowledge of soil microbiomes and their importance in terrestrial ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella anthropi Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 529 LSVB00000000.1 Bac0013539 Wolbachia endosymbiont of Dactylopius coccus Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Dactylopius coccus 1605993 LSYY00000000.1 Bac0013540 Cephaloticoccus primus strain CAG34 "Cephaloticoccus primus strain CAG34 is a Gram-negative, spherical bacterium that thrives under aerobic conditions, exhibiting optimal growth at 37.0 °C. Its distinctive spherical morphology suggests a potential role in various ecological niches where such forms are prevalent. As an aerobic organism, C. primus strain CAG34 likely utilizes oxygen for its metabolic processes, positioning it within environments rich in oxygen availability, such as surface waters or soils.↵↵Given its optimal growth temperature of 37.0 °C, C. primus strain CAG34 may be well-adapted to environments that mimic mammalian body temperature, which could imply a potential association with warm-blooded hosts or environments influenced by such organisms. The Gram-negative cell wall structure of this strain is characterized by a thin peptidoglycan layer and an outer membrane, which may confer certain advantages, such as resistance to certain antibiotics and the ability to thrive in diverse environments.↵↵This strain's specific growth requirements and morphological characteristics may contribute to its ecological competence in competing with other microorganisms in its habitat. Further studies could elucidate the role of C. primus strain CAG34 in biogeochemical cycles or its interactions with other microbial communities, enhancing our understanding of its biological significance." Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Cephaloticoccus Cephaloticoccus primus Gram-negative sphere non-motile aerobic 37 mesophilic 1548207 LSZQ00000000.1 Bac0013541 Clostridiales bacterium KA00134 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium KA00134 1588750 LTAF00000000.1 Bac0013542 Prevotella bivia strain GED7880 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella bivia vagina 28125 LTAG00000000.1 Bac0013543 Alkalihalobacillus trypoxylicola strain KCTC 13244 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalihalobacillus Alkalihalobacillus trypoxylicola 519424 LTAO00000000.1 Bac0013544 Moraxella sp. RCAD0137 ZB100043 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella sp. RCAD0137 1775913 LTCC00000000.1 Bac0013545 Streptococcus pneumoniae strain NTPn 117 "Streptococcus pneumoniae strain NTPn 117 is a Gram-positive coccus that typically forms chains or pairs. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which enhances its adaptability across various habitats. Optimal growth occurs at a temperature of 30.0°C, suggesting a preference for moderately warm environments, which may be reflective of its natural niches.↵↵The cellular arrangement of this strain, characterized by its chains and pairs, is a distinctive feature of the Streptococcus genus, providing insight into its potential interactions within microbial communities. The presence of multiple habitats indicates that S. pneumoniae strain NTPn 117 may occupy diverse ecological niches, possibly influencing its interactions with other microorganisms or its survival strategies in varying environmental conditions.↵↵Understanding the traits of S. pneumoniae strain NTPn 117 can contribute to broader insights into the ecological roles of streptococci, particularly in relation to their adaptability and resilience in fluctuating environments. This adaptability may be vital for its persistence in both host-associated and free-living contexts, underscoring the ecological significance of this strain within microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 LTCJ00000000.1 Bac0013546 Streptococcus pneumoniae strain NTPn 119 "Streptococcus pneumoniae strain NTPn 119 is a Gram-positive coccus that typically occurs in chains or pairs. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen conditions within its habitat. Streptococcus pneumoniae is known to inhabit multiple environments, which may include both human hosts and various ecological niches.↵↵The chain and pair arrangement of cells is characteristic of the genus, contributing to its identification in clinical and environmental microbiological studies. As a facultative anaerobe, strain NTPn 119 can utilize fermentation pathways in the absence of oxygen, which may enhance its survival in diverse habitats where oxygen availability fluctuates.↵↵Understanding the ecological versatility of Streptococcus pneumoniae strain NTPn 119 may provide insights into its potential roles within microbial communities, particularly in environments where nutrient competition and adaptation to changing conditions are critical for survival. This adaptability could also suggest a broader ecological significance in the cycling of nutrients and interactions with other microbial species in its environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 LTCK00000000.1 Bac0013547 Streptococcus pneumoniae strain NTPn 158 "Streptococcus pneumoniae strain NTPn 158 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain exhibits facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 30.0°C, suggesting a preference for relatively moderate thermal conditions, which may be reflective of its natural habitats.↵↵The ecological versatility of S. pneumoniae strain NTPn 158 is underscored by its presence in multiple habitats, potentially allowing it to adapt to various environmental niches. This adaptability may also contribute to its survival and persistence in diverse ecosystems. The arrangement of cells in chains or pairs could be indicative of its social growth behavior, which may facilitate cooperative interactions or enhance resilience against environmental stresses.↵↵Overall, while the specific pathogenic potential of this strain is not addressed, the physiological traits of S. pneumoniae strain NTPn 158 suggest that it is well-equipped for a range of ecological interactions, potentially influencing microbial community dynamics in its habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 LTCQ00000000.1 Bac0013548 Streptococcus pneumoniae strain NTPn 181 "Streptococcus pneumoniae strain NTPn 181 is a Gram-positive coccus that typically arranges itself in pairs or chains. This strain thrives optimally at a temperature of 30.0°C, indicating a preference for moderate warmth, which may reflect its adaptability to various environmental conditions. As a facultative anaerobe, S. pneumoniae strain NTPn 181 can grow in both the presence and absence of oxygen, allowing it to inhabit a diverse range of ecological niches.↵↵The ability of this strain to exist in multiple habitats suggests a broad ecological tolerance, which could facilitate its survival in varying environments. The chain and pair arrangement may contribute to its social behavior and interactions within microbial communities, potentially influencing its ecological dynamics. Overall, the traits of S. pneumoniae strain NTPn 181 highlight its versatility and adaptability, making it a significant organism within its ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 LTCR00000000.1 Bac0013549 Streptococcus pneumoniae strain NTPn 239 "Streptococcus pneumoniae strain NTPn 239 is a Gram-positive coccus that typically forms chains or pairs. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic growth, allowing it to adapt to varying oxygen levels in its habitat. Streptococcus pneumoniae is known to inhabit multiple ecological niches, which may include the respiratory tract of humans and other mammals, providing insights into its potential interactions within diverse microbial communities.↵↵The ability of S. pneumoniae strain NTPn 239 to grow in both aerobic and anaerobic environments suggests a versatile metabolic capacity that may enhance its survival and proliferation in fluctuating conditions. This adaptability could play a significant role in its ecological dynamics, particularly in environments where oxygen availability is inconsistent. Understanding these traits may provide further insights into the strain's ecological interactions and its potential role in the microbial ecosystem it occupies." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 LTCV00000000.1 Bac0013550 Rhodococcus sp. LB1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. LB1 1807499 LTCZ00000000.1 Bac0013551 Bacteroides uniformis strain KLE1607 "Bacteroides uniformis strain KLE1607 is a Gram-negative, obligate anaerobic bacterium that resides predominantly within the gastrointestinal tract of various hosts. This strain is adapted to the gut luminal niche, where it plays a crucial role in the complex microbial ecosystem of the intestinal tract. ↵↵As a member of the Bacteroides genus, strain KLE1607 is likely involved in the fermentation of dietary fibers and other complex carbohydrates, contributing to the production of short-chain fatty acids (SCFAs) that are essential for gut health and host metabolism. The anaerobic nature of this strain indicates its inability to thrive in the presence of oxygen, which shapes its interactions within the gut environment and emphasizes the importance of anaerobic conditions for its survival and function.↵↵The presence of Bacteroides uniformis strain KLE1607 in the gut microbiota highlights its potential role in maintaining intestinal homeostasis and influencing host immune responses. Given the strain's specific habitat and metabolic capabilities, it may also contribute to mediating interactions between diet, microbiome composition, and overall health, underscoring the intricate relationships that define the gut microbiome's impact on host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 LTDC00000000.1 Bac0013552 Bacteroides ovatus strain KLE1656 "Bacteroides ovatus strain KLE1656 is a Gram-negative, anaerobic bacterium primarily found in the gut environment. This species is part of the diverse microbiota that inhabit the gastrointestinal tract of humans and other mammals, playing a significant role in digestion and the overall function of the gut ecosystem. ↵↵As an anaerobe, Bacteroides ovatus strain KLE1656 thrives in environments devoid of oxygen, which is characteristic of the intestinal lumen. Its ability to metabolize complex carbohydrates, including dietary fibers, contributes to the fermentation processes within the gut, leading to the production of short-chain fatty acids (SCFAs). These metabolites are essential for maintaining gut health, providing energy to colonocytes, and exerting beneficial effects on host metabolism and inflammation.↵↵The presence of Bacteroides ovatus strain KLE1656 in the gut microbiome underscores the importance of anaerobic bacteria in the digestive processes and nutrient absorption. Additionally, its role in breaking down polysaccharides can influence the composition of the gut microbiota and may impact host health. The interactions between Bacteroides ovatus and other microbial inhabitants highlight the complex dynamics of gut ecology, where microbial cooperation and competition shape the overall functionality of the gut microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 LTDE00000000.1 Bac0013553 Tissierella creatinophila DSM 6911 Bacillati Bacillota Tissierellia Tissierellales Tissierellaceae Tissierella Tissierella creatinophila anaerobic 1123403 LTDM00000000.1 Bac0013554 Staphylococcus aureus strain HMSC055H04 "Staphylococcus aureus strain HMSC055H04 is a Gram-positive cocci bacterium characterized by its tendency to form clusters or singles. This strain is facultatively anaerobic, indicating its ability to grow in both the presence and absence of oxygen, which may confer advantages in diverse environmental conditions. S. aureus strain HMSC055H04 has an optimal growth temperature of 3.0°C, which suggests it may be adapted to cooler environments, possibly within specific host-associated habitats.↵↵As a member of the Staphylococcus genus, this strain's cluster formation is typical, facilitating its potential interactions within microbial communities. The host-associated habitat implies that S. aureus strain HMSC055H04 could play a role in the microbiota of its host, where its growth at lower temperatures might be particularly significant in niche environments such as skin or mucosal surfaces, which can vary in temperature based on external conditions.↵↵Understanding the ecological role of S. aureus strain HMSC055H04 in a host-associated habitat, particularly at lower temperatures, may provide insights into its survival strategies and interactions with other microbial species. This could have implications for its role in health and disease within the host, as well as its adaptability to changing environmental conditions." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 LTFK00000000.1 Bac0013555 Streptococcus sp. HMSC057G03 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC057G03 1715165 LTLA00000000.1 Bac0013556 Streptococcus sp. HMSC076C09 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HMSC076C09 1715183 LTOI00000000.1 Bac0013557 Corynebacterium sp. HMSC078C09 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC078C09 1739478 LTUR00000000.1 Bac0013558 Corynebacterium sp. HMSC072D12 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC072D12 1739447 LTVS00000000.1 Bac0013559 Porphyromonas sp. HMSC065F10 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. HMSC065F10 1739394 LTXH00000000.1 Bac0013560 Corynebacterium sp. HMSC077D03 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC077D03 1739392 LTXJ00000000.1 Bac0013561 Akkermansia sp. KLE1798 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp. KLE1798 1574265 LTZM00000000.1 Bac0013562 Vibrio europaeus strain PP-638 unknown Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio europaeus 300876 LUAX00000000.1 Bac0013563 Candidatus Bathyarchaeota archaeon B24 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon B24 1779368 LUCB00000000.1 Bac0013564 Candidatus Bathyarchaeota archaeon B63 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon B63 1779372 LUCF00000000.1 Bac0013565 Geobacillus stearothermophilus strain GS27 "Geobacillus stearothermophilus strain GS27 is a variable Gram-staining, rod-shaped bacterium that thrives in high-temperature environments, such as active volcanic areas, as well as in spoiled canned food. This strain is an aerobic microorganism, indicating that it requires oxygen for its metabolic processes, which is consistent with its survival in environments that can support its growth. ↵↵The ability to inhabit both extreme thermal conditions and environments associated with food spoilage suggests that G. stearothermophilus strain GS27 possesses robust biochemical pathways for energy production and nutrient acquisition. Its presence in spoiled canned food may indicate its potential role in food degradation processes, particularly in inadequately processed or stored products, where it may contribute to spoilage through its thermophilic characteristics.↵↵Furthermore, the adaptability of G. stearothermophilus strain GS27 to extreme habitats demonstrates its evolutionary resilience, potentially offering insights into microbial survival strategies in fluctuating environmental conditions. This strain may serve as a model organism for studying the mechanisms of thermotolerance and the biochemical adaptations that enable survival in both natural and anthropogenic environments." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe thermophilic active volcanic area; spoiled canned food 1422 LUCR00000000.1 Bac0013566 Pseudomonas putida strain CBF10-2 "Pseudomonas putida strain CBF10-2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is nonsporulating and relies on heterotrophic processes for energy, utilizing organic compounds found in its habitat. ↵↵P. putida strain CBF10-2 is predominantly found in soil and wastewater environments, where it plays a significant role in the biodegradation of organic pollutants. Its metabolic versatility enables it to adapt to varying nutrient availability and oxygen levels, which is particularly advantageous in dynamic ecosystems such as polluted sites or wastewater treatment facilities. ↵↵The ability of Pseudomonas putida to effectively utilize diverse carbon sources enhances its potential for bioremediation applications, particularly in the detoxification of contaminated environments. Additionally, this strain's adaptation to wastewater habitats may contribute to the microbial diversity and resilience of microbial communities in these environments, underscoring its ecological significance. Thus, P. putida strain CBF10-2 exemplifies the important roles that microorganisms play in nutrient cycling and environmental sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 LUCV00000000.1 Bac0013567 Ligilactobacillus agilis strain UMNLA1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus agilis 1601 LUGO00000000.1 Bac0013568 Bdellovibrio bacteriovorus strain R0 "Bdellovibrio bacteriovorus strain R0 is a Gram-negative, curved rod-shaped bacterium that typically forms filaments. This strain thrives in aerobic conditions and has an optimal growth temperature of 30.0 °C. Its natural habitats include fresh water environments, soil, and surface waters, with specific occurrences noted in the Tiber River and the Upper Oconee River Watershed.↵↵As a member of the Bdellovibrio genus, strain R0 is known for its unique predatory lifestyle, targeting other Gram-negative bacteria. This ecological role may significantly influence microbial community dynamics in its habitats, as Bdellovibrio species are recognized for their potential to control bacterial populations in aquatic ecosystems. The presence of strain R0 in diverse freshwater and soil environments underscores its adaptability and ecological significance, particularly in nutrient cycling and possibly in regulating bacterial blooms in these ecosystems. Overall, Bdellovibrio bacteriovorus strain R0 represents a model organism for studying predatory behaviors and interactions within microbial communities." Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus negative Curved rod Yes 1 aerobic 30 Fresh water; soil; surface water; Tiber River; Upper Oconee River Watershed Filaments 959 LUKE00000000.1 Bac0013569 Flavihumibacter sp. CACIAM 22H1 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavihumibacter Flavihumibacter sp. CACIAM 22H1 1812911 LUKG00000000.1 Bac0013570 Pseudomonas fluorescens strain FW300-N1B4 "Pseudomonas fluorescens strain FW300-N1B4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, relying on organic compounds for energy, and is classified as an aerobe, indicating its requirement for oxygen during metabolic processes. The optimal temperature for growth of FW300-N1B4 is approximately 25.0°C, which suggests a preference for moderate environmental conditions.↵↵Pseudomonas fluorescens strains, including FW300-N1B4, are known for their metabolic versatility and ability to thrive in diverse habitats, which may include soil, water, and plant surfaces. This adaptability can be attributed to the strain's capacity to utilize various organic substrates, allowing it to occupy multiple ecological niches.↵↵The presence of Pseudomonas fluorescens in varied environments highlights its potential role in biogeochemical cycles, particularly in the degradation of organic materials. Its metabolic functions may contribute to nutrient cycling in ecosystems, thus influencing soil health and plant growth. The ecological insights surrounding FW300-N1B4 emphasize the importance of such microorganisms in maintaining the stability and productivity of their habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 LUKJ00000000.1 Bac0013571 Bradyrhizobium liaoningense strain CCNWSX0360 "Bradyrhizobium liaoningense strain CCNWSX0360 is a Gram-negative, non-spore-forming rod-shaped bacterium characterized by its optimal growth temperature of 29.0°C. This strain is part of the Bradyrhizobium genus, which is primarily known for its role in symbiotic nitrogen fixation in leguminous plants. Its rod shape and Gram-negative classification indicate a complex cell wall structure, typical of many soil-dwelling bacteria that contribute to nutrient cycling.↵↵The strain's inability to form spores suggests a reliance on other survival strategies in its environment, which may include metabolic versatility and the ability to form symbiotic relationships with host plants. These traits may enhance its adaptability to varying environmental conditions, particularly in the agricultural contexts where it is likely to be found. ↵↵Bradyrhizobium liaoningense strain CCNWSX0360 may play a significant role in promoting soil fertility through nitrogen fixation, thus supporting plant growth and contributing to sustainable agricultural practices. Understanding the physiological characteristics and environmental preferences of this strain can provide insights into its potential applications in agricultural biotechnology, particularly in improving crop yields in nitrogen-deficient soils. The optimal growth temperature of 29.0°C suggests it may thrive in temperate climates, further emphasizing its potential utility in specific agricultural settings." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium liaoningense Gram-negative rod 29 mesophilic non-spore-forming 43992 LUKO00000000.1 Bac0013572 Lonsdalea britannica strain LMG 26268 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Lonsdalea Lonsdalea britannica 1082704 LUTO00000000.1 Bac0013573 Lonsdalea iberica strain LMG 26264 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Lonsdalea Lonsdalea iberica 1082703 LUTP00000000.1 Bac0013574 Gluconobacter cerinus strain CECT 9110 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter cerinus 38307 LUTU00000000.1 Bac0013575 Pseudomonas protegens strain 11 "Pseudomonas protegens strain 11 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 25.0°C and is classified as a heterotroph, indicating its reliance on organic compounds for energy. P. protegens strain 11 is an aerobic organism, requiring oxygen for its metabolic processes. ↵↵The versatility of Pseudomonas protegens strain 11 is reflected in its ability to inhabit multiple environments, suggesting a broad ecological niche. This adaptability may contribute to its potential roles in various biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. The strain's aerobic nature may further influence its interactions in oxygen-rich environments, potentially affecting the dynamics of microbial communities. Overall, the physiological traits of Pseudomonas protegens strain 11 underscore its ecological significance and adaptability within diverse habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas protegens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 380021 LUUE00000000.1 Bac0013576 Lactiplantibacillus plantarum strain Nizo1839 "Lactiplantibacillus plantarum strain Nizo1839 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic growth. This strain thrives optimally at a temperature of 25.0°C, suggesting its adaptation to a variety of environmental conditions. L. plantarum species, including strain Nizo1839, are often found in diverse habitats, including fermented foods and the gastrointestinal tracts of animals, underscoring their versatility and ecological significance.↵↵The ability to grow in both aerobic and anaerobic environments positions L. plantarum strain Nizo1839 as a resilient microbe capable of adapting to fluctuating oxygen levels. This trait may contribute to its survival and functional roles in various fermentation processes, enhancing the flavor and preservation of food products. Moreover, the chain arrangement of cells may influence its interactions within microbial communities, potentially affecting nutrient cycling and symbiotic relationships in its habitats.↵↵Overall, L. plantarum strain Nizo1839 exemplifies the adaptability of lactic acid bacteria in diverse ecosystems, highlighting its potential for applications in food fermentation and microbiome research. Its facultative anaerobic nature coupled with its chain formation could facilitate unique interactions within mixed microbial communities, potentially influencing both microbial dynamics and the characteristics of fermented products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 LUWB00000000.1 Bac0013577 Lactiplantibacillus plantarum strain 19.1 "Lactiplantibacillus plantarum strain 19.1 is a Gram-positive, rod-shaped bacterium characterized by its arrangement in chains and its facultative anaerobic metabolism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. L. plantarum strain 19.1 is versatile in its habitat, being found in multiple ecological niches, which underscores its adaptability and potential for varied applications in fermentation and food preservation processes. ↵↵The facultative anaerobic nature of this strain allows it to grow in both the presence and absence of oxygen, providing it with a competitive advantage in diverse environments, especially in anaerobic fermentation systems where it can contribute to the production of lactic acid and other metabolites. This metabolic flexibility may also play a crucial role in its survival and functional performance in complex microbial communities.↵↵The ability of L. plantarum strain 19.1 to form chains may facilitate its interactions with other microorganisms and its colonization in various habitats, potentially influencing the dynamics of microbial communities in which it resides. This characteristic, combined with its diverse habitat range, suggests that L. plantarum strain 19.1 may play a significant role in the fermentation processes and ecological balance of its environments, highlighting the importance of understanding its functional contributions in both natural and engineered ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 LUXM00000000.1 Bac0013578 Fusobacterium necrophorum subsp. funduliforme strain LS_1264 "Fusobacterium necrophorum subsp. funduliforme strain LS_1264 is a Gram-negative, anaerobic bacterium belonging to the genus Fusobacterium. As a member of the F. necrophorum complex, this strain exhibits the characteristic properties associated with anaerobes, thriving in environments devoid of oxygen. This trait suggests that strain LS_1264 may be adapted to inhabit anaerobic niches within various biological substrates.↵↵The Gram-negative status of Fusobacterium necrophorum subsp. funduliforme strain LS_1264 indicates a unique cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane, which plays a critical role in its resistance to certain environmental stresses and may influence its interactions with host organisms or other microbial species. ↵↵The anaerobic growth requirement of this strain highlights its potential ecological roles in decomposing organic matter and participating in nutrient cycling within anoxic environments. Such habitats could include the gastrointestinal tracts of animals or the sediments of aquatic systems, where the absence of oxygen facilitates the growth of anaerobic microorganisms. Overall, the characteristics of strain LS_1264 underscore its potential significance in anaerobic microbial communities, as well as its contributions to the biogeochemical processes occurring within these ecosystems." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum negative anaerobic 859 LVEA00000000.1 Bac0013579 Flavobacterium crassostreae strain LPB0076 LPBF77 "Flavobacterium crassostreae strain LPB0076 LPBF77 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 25.0°C. As a member of the Flavobacterium genus, this strain is characterized by its distinct morphological and physiological traits, which are typical of many organisms within this group. The Gram-negative nature of this microbe indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that can influence its interactions within various environments.↵↵The aerobic requirement of Flavobacterium crassostreae strain LPB0076 LPBF77 suggests that it relies on molecular oxygen for its metabolic processes, which may impact its distribution and ecological niche. Given its optimal growth temperature of 25.0°C, this strain may inhabit temperate aquatic environments where such conditions are prevalent. The combination of its Gram-negative structure and aerobic lifestyle may facilitate its adaptation to nutrient-rich waters, potentially allowing it to participate in the decomposition of organic matter.↵↵Understanding the specific traits of Flavobacterium crassostreae strain LPB0076 LPBF77 can provide insights into its ecological role, particularly in marine environments, where it may contribute to nutrient cycling and the maintenance of microbial diversity within the microbial community. Further research could elucidate the specific interactions this strain has with its environment and its potential influence on ecosystem dynamics." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium crassostreae Gram-negative rod non-motile aerobic 25 mesophilic 1763534 LVEP00000000.1 Bac0013580 Gluconobacter japonicus strain CECT 8443 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter japonicus 376620 LVHE00000000.1 Bac0013581 Prochlorococcus sp. MIT 1303 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 1303 1723647 LVHK00000000.1 Bac0013582 Providencia stuartii strain Crippen "Providencia stuartii strain Crippen is a Gram-negative, rod-shaped bacterium characterized by its nonsporulating nature and facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is a chemoheterotroph, meaning it derives its energy from organic compounds, which suggests it plays a role in nutrient cycling in its habitat. Its optimal growth temperature is 37.0°C, indicating a preference for conditions that are typical of warm-blooded hosts or environments that mimic such temperatures. ↵↵P. stuartii has been isolated from a variety of habitats, highlighting its adaptability and potential ecological versatility. The ability to grow in multiple environments suggests that this strain may occupy niches where organic nutrients are available, possibly contributing to decomposition processes or interacting with other microbial communities. ↵↵Understanding the ecological role and metabolic capabilities of Providencia stuartii strain Crippen can provide insights into its potential applications in biotechnology or its interactions within microbial ecosystems, particularly in environments where organic material is abundant. This adaptability underscores the importance of studying P. stuartii within broader ecological contexts, as it may offer valuable information regarding microbial dynamics in diverse environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia stuartii Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 588 LVIE00000000.1 Bac0013583 Flavobacterium fryxellicola strain DSM 16209 FBFR49 "Flavobacterium fryxellicola strain DSM 16209 FBFR49 is a Gram-negative, rod-shaped bacterium characterized by its optimal growth temperature of 16.0°C. This strain is part of the diverse genus Flavobacterium, which is known for its role in various ecological niches, particularly in aquatic environments.↵↵The Gram-negative nature of F. fryxellicola indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a characteristic that often contributes to the organism's adaptability to different environmental conditions. The rod shape of the bacterium is typical of many members of the Flavobacteriaceae family and may facilitate motility and nutrient uptake in its habitat.↵↵At an optimal growth temperature of 16.0°C, F. fryxellicola is likely adapted to cooler environments, suggesting a potential role in biogeochemical processes in cold aquatic systems. This temperature preference also indicates that the strain may be an important player in microbial communities that thrive in temperate or polar regions, where it could contribute to the degradation of organic matter and the cycling of nutrients.↵↵Overall, Flavobacterium fryxellicola strain DSM 16209 FBFR49 exemplifies the ecological versatility of Flavobacterium species, potentially influencing aquatic ecosystems by participating in the breakdown of organic compounds at lower temperatures." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium fryxellicola Gram-negative rod non-motile 16 psychrotolerant 249352 LVJE00000000.1 Bac0013584 Paenibacillus glacialis strain DSM 22343 PGLA80 "Paenibacillus glacialis strain DSM 22343 PGLA80 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolism. This strain thrives optimally at a temperature of 16.0°C, indicating a preference for cooler environments, which is consistent with its isolation from glacial habitats. The spore-forming capability of P. glacialis suggests an adaptation that allows it to endure harsh conditions, including low temperatures and nutrient scarcity.↵↵The aerobic nature of this strain implies that it requires oxygen for its growth and metabolism, which is an essential trait for many bacteria in environments with sufficient oxygen availability. This characteristic may contribute to its ecological role in glacial ecosystems, where it could participate in biogeochemical cycles, possibly influencing nutrient dynamics in cold habitats.↵↵In summary, Paenibacillus glacialis strain DSM 22343 PGLA80 exemplifies a group of microorganisms adapted to thrive in cold, aerobic environments, and its spore-forming ability likely plays a critical role in its survival and ecological interactions within glacial ecosystems." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus glacialis Gram-positive rod aerobic 16 psychrotolerant spore-forming 494026 LVJH00000000.1 Bac0013585 Rhodanobacter sp. FW510-R10 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. FW510-R10 1524462 LVJU00000000.1 Bac0013586 Ligilactobacillus aviarius strain UMNLAv8 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus aviarius 1606 LVKI00000000.1 Bac0013587 Ralstonia solanacearum strain UW551 "Ralstonia solanacearum strain UW551 is a Gram-negative bacterium that thrives in freshwater and soil environments. This strain is a member of the Ralstonia genus, which is known for its diverse ecological niches and adaptability to various habitats. As a freshwater inhabitant, R. solanacearum UW551 is likely to play a role in nutrient cycling and may contribute to the microbial dynamics in aquatic ecosystems. ↵↵The bacterium's presence in soil further suggests its involvement in plant-microbe interactions, which can influence soil health and fertility. R. solanacearum species are recognized for their ability to survive in diverse environmental conditions, and strain UW551's adaptation to both freshwater and soil habitats exemplifies this versatility.↵↵The ecological significance of R. solanacearum UW551 may extend to its potential interactions with other microorganisms and its role in biogeochemical processes within these habitats. Understanding the specific traits and behaviors of this strain can contribute to broader insights into the ecological functions of Gram-negative bacteria in freshwater and soil ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 LVKV00000000.1 Bac0013588 Campylobacter concisus strain RMIT-O17 "Campylobacter concisus strain RMIT-O17 is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This strain is microaerophilic, requiring reduced oxygen levels for optimal growth, which is a common trait among many members of the Campylobacter genus. C. concisus is known to be host-associated, indicating that it commonly resides within a host organism, although specific host associations for strain RMIT-O17 are not detailed in the available data.↵↵The microaerophilic nature of C. concisus suggests that it may thrive in environments where oxygen is limited, such as the gastrointestinal tracts of certain animals or humans. This trait may play a role in its ecological niche, potentially influencing its interactions within the microbiota of its host. Additionally, the ability to form chains could facilitate colonization and stability within the host environment, allowing for enhanced survival in competitive microbial communities.↵↵Understanding the growth conditions and morphological characteristics of Campylobacter concisus strain RMIT-O17 can provide insights into its ecological role and possible interactions within host-associated microbiomes, which may be critical for comprehending its potential impacts on host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 LVLC00000000.1 Bac0013589 Bacillus badius strain DSM 5610 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Pseudobacillus Pseudobacillus badius 1455 LVTO00000000.1 Bac0013590 Pontibacter flavimaris strain S10-8 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter flavimaris 1797110 LVWA00000000.1 Bac0013591 Paenibacillus sp. P3E Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. P3E 1349435 LVWH00000000.1 Bac0013592 Wohlfahrtiimonas chitiniclastica strain BM-Y Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Ignatzschineriaceae Wohlfahrtiimonas Wohlfahrtiimonas chitiniclastica 400946 LVXD00000000.1 Bac0013593 Niastella yeongjuensis strain DSM 17621 "Niastella yeongjuensis strain DSM 17621 is a Gram-negative, rod-shaped bacterium that exhibits strict aerobic metabolic requirements and does not form spores. This strain thrives optimally at a temperature of 32.0°C, indicating a preference for mesophilic conditions that are typically found in various terrestrial environments. ↵↵As a non-spore-forming organism, N. yeongjuensis may be reliant on its aerobic metabolism for energy production and survival under oxygen-rich conditions. The absence of sporulation suggests that this strain may be less resilient to harsh environmental changes compared to spore-forming bacteria, which can endure extreme conditions through dormancy. ↵↵Understanding the growth characteristics of N. yeongjuensis, particularly its temperature preference and oxygen requirements, could provide insights into its potential ecological roles in microbiomes, where it may contribute to nutrient cycling or interact with other microbial community members in oxygenated habitats. Additionally, the physiological traits of this strain could offer opportunities for further exploration in biotechnological applications, where aerobic processes are essential for various biochemical transformations." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niastella Niastella yeongjuensis Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 354355 LVXG00000000.1 Bac0013594 Niastella vici strain DJ57 "Niastella vici strain DJ57 is a Gram-negative, filamentous bacterium that exhibits aerobic respiration. This strain thrives optimally at a temperature of 29.0 °C, indicating a preference for moderate thermal conditions. The filamentous morphology of Niastella vici strain DJ57 suggests a potential for complex colony structures, which may play a role in its ecological interactions and adaptability in various environments.↵↵The Gram-negative nature of this microbe is indicative of its unique cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature can influence its susceptibility to various antimicrobial agents and its interactions with other microorganisms in its habitat.↵↵Given its aerobic requirement, Niastella vici strain DJ57 likely occupies environments where oxygen is readily available, potentially contributing to biogeochemical cycles through its metabolic processes. The filamentous form may facilitate nutrient acquisition and may enhance its competitive ability in nutrient-limited settings. Understanding the ecological roles of such filamentous bacteria could provide insights into their contributions to ecosystem dynamics, particularly in aerobic environments where they may participate in the degradation of organic matter and nutrient recycling." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niastella Niastella vici Gram-negative filament aerobic 29 mesophilic 1703345 LVYD00000000.1 Bac0013595 Acidithiobacillus ferrivorans strain PQ33 Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrivorans 160808 LVZL00000000.1 Bac0013596 Niastella populi strain CCTCC AB 208238 "Niastella populi strain CCTCC AB 208238 is a Gram-negative, rod-shaped bacterium that exhibits strict aerobic growth. This strain thrives optimally at a temperature of 29.0 °C, suggesting a preference for moderate environmental conditions. As a member of the Niastella genus, it is characterized by its unique morphological and physiological traits that underscore its adaptation to aerobic environments. ↵↵Niastella populi strain CCTCC AB 208238 may play a role in various ecological niches, potentially contributing to the decomposition of organic matter or nutrient cycling in its habitat. The strain's aerobic nature indicates that it requires oxygen for metabolic processes, which could influence its ecological interactions with other microorganisms in its environment. Understanding this bacterium's specific metabolic pathways and interactions could provide insights into its ecological roles and potential applications in bioremediation or biotechnology. Further research is warranted to elucidate the full scope of its biological functions and ecological significance." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niastella Niastella populi Gram-negative rod non-motile aerobic 29 mesophilic 550983 LWBP00000000.1 Bac0013597 Microbacterium sp. H83 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. H83 1827324 LWCU00000000.1 Bac0013598 Proteobacteria bacterium SG_bin4 988 Pseudomonadati Pseudomonadota Proteobacteria bacterium SG_bin4 1827381 LWDH00000000.1 Bac0013599 Halioglobus sp. HI00S01 HI00S01_c98 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Halioglobus Halioglobus sp. HI00S01 1822214 LWEE00000000.1 Bac0013600 Stutzerimonas frequens strain HI00D01 HI00D01_c99 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas frequens 2968969 LWEF00000000.1 Bac0013601 Alcanivorax sp. HI0013 HI0013_c999 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. HI0013 1822221 LWEM00000000.1 Bac0013602 Sulfitobacter sp. HI0027 HI0027_c99 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. HI0027 1822226 LWER00000000.1 Bac0013603 Erythrobacter sp. HI0037 HI0037_c999 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. HI0037 1822230 LWEV00000000.1 Bac0013604 Erythrobacter sp. HI0063 HI0063_c99 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. HI0063 1822240 LWFF00000000.1 Bac0013605 Oleiphilus sp. HI0069 HI0069_c999 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oleiphilaceae Oleiphilus Oleiphilus sp. HI0069 1822245 LWFK00000000.1 Bac0013606 Erythrobacter sp. HI0074 HI0074_c99 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. HI0074 1822249 LWFO00000000.1 Bac0013607 Sulfitobacter sp. HI0082 HI0082_c999 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. HI0082 1822257 LWFW00000000.1 Bac0013608 Cyanobacterium sp. IPPAS B-1200 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Cyanobacterium Cyanobacterium sp. IPPAS B-1200 1562720 LWHC00000000.1 Bac0013609 Methylobacterium platani strain PMB02 "Methylobacterium platani strain PMB02 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderately warm environments. The Gram-negative nature of M. platani indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in various ecological niches.↵↵As a member of the genus Methylobacterium, this strain is likely involved in the metabolism of one-carbon compounds, such as methanol, which can be derived from plant emissions and other organic sources. The aerobic requirement of M. platani PMB02 implies that it utilizes oxygen as a terminal electron acceptor during respiration, which may facilitate its growth in oxygen-rich environments. ↵↵While specific ecological roles of M. platani PMB02 have not been delineated in the provided data, its metabolic capabilities suggest potential contributions to carbon cycling and interactions with plant systems. Understanding these interactions could reveal insights into the role of this strain in promoting plant health or influencing soil microbial communities, especially in environments where one-carbon compounds are prevalent." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium platani Gram-negative rod aerobic 29 mesophilic non-spore-forming 427683 LWHQ00000000.1 Bac0013610 Streptomyces sp. CB02923 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02923 1718985 LWKZ00000000.1 Bac0013611 Streptomyces sp. CB03911 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB03911 1804758 LWLA00000000.1 Bac0013612 Natrinema saccharevitans strain AB14 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema saccharevitans 301967 LWLN00000000.1 Bac0013613 Arthrobacter sp. OY3WO11 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. OY3WO11 1835723 LWLP00000000.1 Bac0013614 Micromonospora sp. CB01531 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. CB01531 1718947 LWLS00000000.1 Bac0013615 Bacillus cereus strain P4-0-9 "Bacillus cereus strain P4-0-9 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic respiration. This strain thrives optimally at a temperature of 25.0°C, indicating its preference for moderate temperatures that may reflect its adaptability to a range of environmental conditions. ↵↵Bacillus cereus is known for its ability to inhabit various environments, suggesting that strain P4-0-9 may be versatile in its habitat preferences, potentially contributing to its survival in diverse ecological niches. The aerobic nature of this strain implies a reliance on oxygen for metabolic processes, which may affect its distribution in environments with varying oxygen levels.↵↵Given its traits, Bacillus cereus strain P4-0-9 could play a role in nutrient cycling within its ecosystems, particularly in aerobic conditions where it may contribute to the breakdown of organic matter. This functional potential highlights the importance of such strains in maintaining ecological balance and supporting the health of their habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LWLW00000000.1 Bac0013616 Enterococcus thailandicus strain F0711D 46 Ent-16_S35_L001_001_9 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus thailandicus 417368 LWMN00000000.1 Bac0013617 Streptomyces badius strain SF7B6 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces badius 29 mesophilic spore-forming 1941 LWMP00000000.1 Bac0013618 Methanobrevibacter curvatus strain DSM 11111 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter curvatus 49547 LWMV00000000.1 Bac0013619 Corynebacterium sp. HMSC08F01 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC08F01 1581139 LWNT00000000.1 Bac0013620 Achromobacter xylosoxidans strain KCJK1737 "Achromobacter xylosoxidans strain KCJK1737 is a Gram-negative, rod-shaped bacterium that exhibits aerobic growth. This strain is notably associated with host environments, indicating its potential presence in various biological systems, which may include both plant and animal hosts. ↵↵The Gram-negative nature of A. xylosoxidans suggests a complex cell wall structure characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may contribute to its survival and adaptability in host-associated habitats. As an aerobe, this strain requires oxygen for its metabolic processes, positioning it within ecological niches where aerobic conditions prevail.↵↵The association of A. xylosoxidans strain KCJK1737 with hosts could imply a role in biogeochemical cycles or interactions with other microbial communities within the host environment. This characteristic may also facilitate its utility in bioremediation or as a bioindicator in ecological studies, although further research would be necessary to elucidate its specific interactions and functions in these contexts. Moreover, the presence of this strain in a host-associated habitat underscores the importance of microbial diversity in maintaining ecological balance and influencing host health." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter xylosoxidans Negative Rod Yes 1 1 Aerobe HostAssociated Free living 85698 LWPK00000000.1 Bac0013621 Acidithiobacillus thiooxidans strain DXS-W Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus thiooxidans mining sites 930 LWRY00000000.1 Bac0013622 Acidithiobacillus thiooxidans strain A02 Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus thiooxidans mining sites 930 LWSA00000000.1 Bac0013623 Amycolatopsis sp. M39 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. M39 1825094 LWSF00000000.1 Bac0013624 Metabacillus litoralis strain C44 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Metabacillus Metabacillus litoralis 152268 LWSG00000000.1 Bac0013625 Xanthomonas translucens pv. poae strain B99 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas graminis 3390026 LWSU00000000.1 Bac0013626 Nostoc sp. ATCC 53789 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. ATCC 53789 76335 LWSY00000000.1 Bac0013627 Nostoc sp. ATCC 43529 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. ATCC 43529 1840705 LWTK00000000.1 Bac0013628 Blastococcus sp. CCUG 61487 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. CCUG 61487 1840703 LWUA00000000.1 Bac0013629 Bradyrhizobium elkanii strain BLY3-8 "Bradyrhizobium elkanii strain BLY3-8 is a Gram-negative bacterium distinguished by its symbiotic relationship with legumes, particularly in nitrogen fixation processes. This strain is part of the broader Bradyrhizobium genus, which is known for its ability to form root nodules on host plants, facilitating the conversion of atmospheric nitrogen into a form that is accessible to plants. ↵↵The Gram-negative nature of B. elkanii strain BLY3-8 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structural feature can influence its interactions with the plant host and the surrounding soil microbiota. ↵↵Bradyrhizobium species, including strain BLY3-8, are often utilized in agricultural practices to enhance soil fertility and promote sustainable crop production through their nitrogen-fixing capabilities. The efficiency of this strain in symbiotic nitrogen fixation may vary depending on environmental conditions and the specific legume host it associates with.↵↵Understanding the characteristics of B. elkanii strain BLY3-8 can provide insight into its potential applications in agroecological systems, particularly in promoting sustainable agriculture. Furthermore, the symbiotic relationship it forms with legumes underscores the importance of microbial diversity in maintaining soil health and fertility, highlighting the role of such bacteria in agroecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium elkanii negative 29448 LWUI00000000.1 Bac0013630 Proteus myxofaciens ATCC 19692 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus myxofaciens 1354337 LXEN00000000.1 Bac0013631 Buttiauxella noackiae ATCC 51607 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella noackiae aerobic 1354255 LXEO00000000.1 Bac0013632 Kluyvera georgiana ATCC 51603 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kluyvera Kluyvera georgiana aerobic 1354264 LXEU00000000.1 Bac0013633 Moraxella catarrhalis strain Z7574 "Moraxella catarrhalis strain Z7574 is a Gram-negative, coccoid bacterium that is classified as an aerobe, requiring oxygen for its growth and metabolic processes. This strain is host-associated, indicating its prevalence in association with a specific host environment, although the precise host is not specified in the available data. As a member of the Moraxellaceae family, M. catarrhalis is typically found in the upper respiratory tract of humans, suggesting a potential role in respiratory microbiomes.↵↵The coccoid shape of M. catarrhalis strain Z7574 contributes to its distinctive morphology, which can be observed under a microscope following Gram staining procedures. The Gram-negative characteristic of this bacterium implies a thin peptidoglycan layer and the presence of an outer membrane, a feature that may influence its interactions with the host immune system and susceptibility to certain antibiotics.↵↵While the specific pathogenic potential of strain Z7574 is not detailed, the broader genus Moraxella has been associated with various respiratory conditions in humans. This association underscores the importance of understanding the ecological roles of such microbes within host-associated environments, as they may contribute to both health and disease dynamics. The presence of M. catarrhalis in the human microbiome highlights its potential interactions with other microbial inhabitants and its involvement in maintaining respiratory health or contributing to dysbiosis in the upper respiratory tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella catarrhalis Negative Cocci No 1 2 Aerobe Mesophilic HostAssociated Free living 480 LXHE00000000.1 Bac0013634 Pseudomonas sp. 1D4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 1D4 1843691 LXJQ00000000.1 Bac0013635 Pseudomonas sp. 21C1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 21C1 1843690 LXJR00000000.1 Bac0013636 Rhizobium sp. AC44/96 AS1H6_9 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. AC44/96 1841654 LXKO00000000.1 Bac0013637 Agrobacterium tumefaciens strain B140/95 "Agrobacterium tumefaciens strain B140/95 is a Gram-negative, rod-shaped bacterium that optimally grows at 25.0°C and requires oxygen for its metabolic processes, classifying it as an aerobe. This strain exhibits versatility in its habitat, being found in various environments, which may include soil, plant surfaces, and other ecological niches where it can interact with plant hosts. ↵↵The ability of A. tumefaciens to thrive in diverse habitats suggests its potential role in plant-microbe interactions, possibly contributing to nutrient cycling and plant health in its ecological niches. Understanding the adaptability of strain B140/95 to multiple environments can provide insights into its ecological significance and interactions within microbial communities. Furthermore, the optimal growth temperature of 25.0°C aligns with many temperate and subtropical environments, indicating its potential prevalence in agricultural systems where temperature regulation is critical for crop health. ↵↵Overall, the traits observed in Agrobacterium tumefaciens strain B140/95 underscore its ecological versatility and potential contributions to plant-associated microbiomes, warranting further investigation into its role in agricultural contexts and microbial ecology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 LXKS00000000.1 Bac0013638 Agrobacterium tumefaciens strain 15-174 "Agrobacterium tumefaciens strain 15-174 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This strain is part of a broader group of bacteria known for their diverse habitats, which include soil and plant environments, indicating a versatile ecological niche. The ability to grow in various settings suggests that A. tumefaciens strain 15-174 may play a role in nutrient cycling and plant-microbe interactions.↵↵As an aerobe, this strain requires oxygen for its metabolic processes, which aligns with its habitats that typically offer sufficient oxygen levels. The strain's rod shape is characteristic of many bacteria in the Agrobacterium genus, which often exhibit this morphology. The environmental adaptability of A. tumefaciens strain 15-174 allows it to occupy multiple ecological niches, potentially influencing local microbial communities and plant health.↵↵Given its traits and ecological versatility, A. tumefaciens strain 15-174 may contribute to the dynamics of soil microbiomes and plant interactions, possibly affecting nutrient availability and plant growth in its natural habitats. Further research could elucidate its specific roles in these interactions and its potential applications in agriculture and biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 LXKY00000000.1 Bac0013639 Bacillus thuringiensis strain GOE7 "Bacillus thuringiensis strain GOE7 is a Gram-positive, rod-shaped bacterium characterized by its ability to undergo sporulation and its facultative anaerobic metabolism. This strain is known to inhabit host-associated environments, suggesting a potential symbiotic or associative role in various biological systems. ↵↵As a member of the Bacillus genus, strain GOE7 is likely to produce a range of bioactive compounds, including insecticidal proteins, which are characteristic of many Bacillus thuringiensis strains. The ability to sporulate enables this bacterium to survive in adverse conditions, allowing it to persist in environments where nutrients may be limited. Its facultative anaerobic nature indicates that it can adapt to varying oxygen levels, utilizing aerobic respiration in oxygen-rich conditions while switching to fermentation or anaerobic respiration when oxygen is scarce.↵↵The host-associated habitat of Bacillus thuringiensis strain GOE7 suggests a potential role in the microbiota of plants or animals, contributing to the health and development of its host. This association may further enhance our understanding of the ecological dynamics between microbes and their hosts, particularly in terms of microbial interactions and their influence on host physiology. Future studies could explore the specific interactions and potential benefits that strain GOE7 provides to its host, as well as its applications in biocontrol and sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 LXLL00000000.1 Bac0013640 Bacillus mycoides strain GOE11 "Bacillus mycoides strain GOE11 is a Gram-positive, rod-shaped bacterium that thrives in the deep-sea environment, specifically within the Iheya Ridge hydrothermal vent field of the Okinawa Trough. As a facultative anaerobe, this strain demonstrates metabolic versatility, allowing it to utilize both aerobic and anaerobic respiration depending on the availability of oxygen in its habitat. ↵↵The unique ecological niche of the Iheya Ridge hydrothermal vent field, characterized by high temperatures and rich mineral deposits, likely influences the metabolic capabilities and survival strategies of B. mycoides strain GOE11. Its ability to adapt to fluctuating oxygen levels could contribute to its role in biogeochemical cycles within this extreme environment, potentially affecting nutrient cycling and microbial community dynamics. ↵↵The findings surrounding B. mycoides strain GOE11 highlight the remarkable adaptability of microbial life in extreme habitats, offering insights into the evolutionary processes that enable survival in such specialized ecological niches. Further research may reveal additional traits that underscore its ecological significance and potential biotechnological applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 LXLX00000000.1 Bac0013641 Clostridiales bacterium KLE1615 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium KLE1615 1715004 LXPQ00000000.1 Bac0013642 Marinobacter adhaerens strain PBVC038 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter adhaerens 1033846 LXRF00000000.1 Bac0013643 Clostridium sp. Bc-iso-3 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. Bc-iso-3 1848158 LXSB00000000.1 Bac0013644 Eikenella corrodens strain NML04-0072 "Eikenella corrodens strain NML04-0072 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic characteristics. This organism is commonly found in various human habitats, including the gastrointestinal tract, genital tracts, oral cavity, oropharynx, respiratory tract, and urogenital tract. Its ability to thrive in both aerobic and anaerobic environments suggests a versatile metabolism that allows it to adapt to different niches within the human body.↵↵Eikenella corrodens is part of the normal human microbiota, particularly associated with mucosal surfaces, which indicates its potential role in maintaining microbial balance and health in these regions. While this strain's specific interactions within these habitats remain to be elucidated, its presence in diverse anatomical locations may suggest involvement in complex microbial communities and interactions. ↵↵The adaptability of Eikenella corrodens strain NML04-0072 to various environments, combined with its colonization of mucosal surfaces, may play a significant role in its ecological dynamics within the human microbiome, potentially influencing host-microbe interactions and local microbial ecology. Further research could provide insights into its functional roles and contributions to health and disease in the human host." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella corrodens Negative Rod Facultative anaerobe gastrointestinal; genital tracts; intestinal; oral cavity; oropharyngeal; oropharynx; respiratory; upper respiratory tract; urogenital tract 539 LXSG00000000.1 Bac0013645 Eikenella sp. NML03-A-027 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella sp. NML03-A-027 1795828 LXSM00000000.1 Bac0013646 Eikenella halliae strain NML130454 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella halliae 1795832 LXSQ00000000.1 Bac0013647 Eikenella sp. NML97-A-109 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella sp. NML97-A-109 1795833 LXSS00000000.1 Bac0013648 Campylobacter ornithocola strain WBE38 "Campylobacter ornithocola strain WBE38 is a Gram-negative, rod-shaped bacterium that exhibits microaerophilic growth characteristics. As a non-spore-forming organism, it thrives in environments with reduced oxygen levels, which is a defining trait of its metabolic requirements. Campylobacter species are generally known for their distinctive spiral shape; however, strain WBE38 maintains the typical rod morphology associated with Campylobacter ornithocola, suggesting adaptations that may be relevant to its ecological niche.↵↵The microaerophilic nature of strain WBE38 indicates that it likely occupies habitats where oxygen concentrations are lower than those found in the atmosphere, which may include certain avian gastrointestinal tracts, consistent with the general ecology of Campylobacter species. This ecological adaptability may support its survival in specific environments, potentially influencing its role within those ecosystems.↵↵Understanding the physiological traits of Campylobacter ornithocola strain WBE38 can provide insights into its ecological interactions and evolutionary adaptations. The microaerophilic requirement, alongside its rod shape and Gram-negative classification, may reflect its evolutionary responses to environmental pressures, further highlighting the complex interplay between microbial physiology and habitat selection in microbial ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ornithocola Gram-negative rod microaerophile non-spore-forming 1848766 LXSU00000000.1 Bac0013649 Sphingobium sp. TCM1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. TCM1 453246 LXVX00000000.1 Bac0013650 Sphingomonas sp. TDK1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. TDK1 453247 LXVY00000000.1 Bac0013651 Rothia nasimurium strain PT-32 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia nasimurium microaerophile 85336 LXWF00000000.1 Bac0013652 Candidatus Nitrosopelagicus brevis strain U25 Thermoproteati Nitrososphaerota Candidatus Nitrosopelagicus Candidatus Nitrosopelagicus brevis 1410606 LXWN00000000.1 Bac0013653 Methylosinus sp. 3S-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylosinus Methylosinus sp. 3S-1 1849840 LXWX00000000.1 Bac0013654 Sphingobium sp. SA916 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. SA916 1851207 LXYF00000000.1 Bac0013655 Balneola sp. EhC07 Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp. EhC07 1849360 LXYG00000000.1 Bac0013656 Rhodobacteraceae bacterium EhC02 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium EhC02 1849170 LXYH00000000.1 Bac0013657 Ewingella americana strain BRK18a Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Ewingella Ewingella americana 41202 LXYV00000000.1 Bac0013658 Veronia pacifica strain CAIM 1920 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Veronia Veronia pacifica 1080227 LYBM00000000.1 Bac0013659 Planctopirus hydrillae strain JC280 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctopirus Planctopirus hydrillae 1841610 LYDR00000000.1 Bac0013660 Variovorax sp. JS1663 JS1663_0140 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. JS1663 1851577 LYMK00000000.1 Bac0013661 Rhodococcus erythropolis strain MI2 "Rhodococcus erythropolis strain MI2 is a Gram-positive, filamentous rod-shaped bacterium that thrives in aerobic conditions and exhibits optimal growth at 20.0 °C. This strain belongs to a genus known for its metabolic versatility, which allows it to inhabit a variety of environments. The filamentous arrangement of cells may facilitate interactions with surrounding microorganisms and the uptake of nutrients, potentially enhancing its survival in diverse habitats.↵↵As an aerobic organism, R. erythropolis strain MI2 relies on oxygen for its metabolic processes, which may influence its ecological roles in environments where oxygen availability varies. The ability to inhabit multiple habitats suggests that this strain may play significant roles in biogeochemical cycles, contributing to the degradation of organic compounds and possibly aiding in bioremediation efforts. The filamentous morphology could also suggest adaptations for biofilm formation, which may enhance its resilience and functional capabilities in various ecological niches.↵↵Overall, R. erythropolis strain MI2 exemplifies the adaptability of certain microbial species to diverse environments, reinforcing the importance of understanding microbial traits in ecological contexts and their potential applications in environmental biotechnology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 1833 LYPG00000000.1 Bac0013662 Lactobacillus crispatus strain UMNLC2 Lcrispatus9C4S15195 "Lactobacillus crispatus strain UMNLC2 Lcrispatus9C4S15195 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and is classified as a facultative anaerobe. This strain does not form spores and thrives optimally at a temperature of 37.0°C, suggesting its adaptation to a host-associated environment where such conditions are prevalent. ↵↵As a member of the Lactobacillus genus, L. crispatus is known for its role in various host-associated ecosystems, particularly in the human microbiome where it contributes to maintaining a balanced microbial community. The facultative anaerobic nature of this strain indicates its ability to survive in both aerobic and anaerobic conditions, which may enhance its resilience and functional versatility within diverse host environments.↵↵The ecological significance of Lactobacillus crispatus UMNLC2 Lcrispatus9C4S15195 lies in its potential role in competitive exclusion of pathogenic microorganisms and its contribution to host health, particularly in the context of the gastrointestinal tract or urogenital flora. Its consistent presence in these environments may be indicative of its functional importance in modulating local microbiota, thereby influencing host immune responses and overall microbiome stability. Further studies could elucidate the specific mechanisms by which this strain interacts with other microbial communities and its potential benefits in probiotic applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYQS00000000.1 Bac0013663 Lactobacillus crispatus strain UMNLC5 crispatus9H9S1819 "Lactobacillus crispatus strain UMNLC5 crispatus9H9S1819 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as nonsporulating and displays facultative anaerobic metabolism, allowing it to thrive in environments with varying oxygen levels. Optimal growth occurs at 37.0°C, which is consistent with its adaptation to host-associated habitats.↵↵As a member of the Lactobacillus genus, L. crispatus is known for its role in the microbiota of various mammalian hosts, particularly in the human gastrointestinal and urogenital tracts. The presence of this strain in such niches suggests its potential involvement in maintaining microbial balance and possibly contributing to host health through mechanisms such as competitive inhibition of pathogens and modulation of the local immune response. ↵↵Furthermore, the chain-forming characteristic of L. crispatus UMNLC5 crispatus9H9S1819 may enhance its stability and resilience in the dynamic environments it inhabits. This structural arrangement could facilitate cooperative interactions within microbial communities, underscoring the importance of this strain in its ecological context. Understanding the specific roles and functions of Lactobacillus crispatus in host-associated environments may provide insights into the broader implications of probiotics and their contributions to microbial health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYQV00000000.1 Bac0013664 Lactobacillus crispatus strain UMNLC6 crispatus9I3S1919 "Lactobacillus crispatus strain UMNLC6 crispatus9I3S1919 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is nonsporulating and is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. The optimal growth temperature for this strain is 37.0 degrees Celsius, which aligns with the physiological conditions found within host-associated habitats, such as the human gastrointestinal tract or other mucosal surfaces.↵↵Lactobacillus crispatus strains are known for their role in maintaining a balanced microbiota, particularly in the female reproductive tract, where they can help prevent the colonization of pathogenic microorganisms. The chain arrangement of this strain may facilitate interactions with other microbial species in its habitat, potentially enhancing its ability to adhere to surfaces or compete for resources. ↵↵Given its facultative anaerobic nature and host-associated habitat, Lactobacillus crispatus strain UMNLC6 crispatus9I3S1919 may play a crucial role in modulating the local microenvironment, contributing to homeostasis and influencing host health through mechanisms such as the production of lactic acid and other metabolites. This suggests a possible involvement in protective symbiotic relationships within the microbiome, reinforcing the importance of this strain in health and disease contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYQW00000000.1 Bac0013665 Lactobacillus crispatus strain UMNLC8 crispatus9D6S21197 "Lactobacillus crispatus strain UMNLC8 crispatus9D6S21197 is a Gram-positive, rod-shaped microorganism that typically forms chains and is characterized as a nonsporulating organism. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting a potential adaptation to host-associated environments. As a facultative anaerobe, L. crispatus UMNLC8 can grow in both the presence and absence of oxygen, allowing it to colonize various niches within host organisms, particularly in anaerobic or microaerophilic conditions commonly found in the gastrointestinal and urogenital tracts.↵↵Lactobacillus species, including this strain, are often involved in the maintenance of microbial homeostasis within their habitats, contributing to the competitive exclusion of pathogenic organisms and supporting host health through the production of lactic acid and other metabolites. Understanding the specific ecological roles of Lactobacillus crispatus UMNLC8 crispatus9D6S21197 may provide insights into its potential applications in probiotics or biotherapeutics aimed at restoring or maintaining a healthy microbiota in host-associated environments. The strain's ability to thrive in variable oxygen conditions may also highlight its adaptability in fluctuating environments, suggesting a robust role in microbial community dynamics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYQY00000000.1 Bac0013666 Lactobacillus crispatus strain UMNLC11 crispatus9E6S24191 "Lactobacillus crispatus strain UMNLC11 crispatus9E6S24191 is a Gram-positive, rod-shaped bacterium that typically appears in chains. This strain is nonsporulating and exhibits facultative anaerobic respiration, enabling it to thrive in both aerobic and anaerobic environments. It is optimally active at a temperature of 37.0°C, which aligns with its primary habitat in host-associated environments.↵↵Lactobacillus species, including L. crispatus, are well-known for their roles in fermentation and are commonly found in various niches within the human microbiome, particularly in the gastrointestinal and genitourinary tracts. The presence of L. crispatus strain UMNLC11 crispatus9E6S24191 in host-associated habitats suggests its potential involvement in maintaining microbial balance and contributing to the health of the host. ↵↵The strain's ability to grow in fluctuating oxygen levels may provide it with an adaptive advantage in diverse microenvironments within the host, where oxygen availability can vary significantly. This flexibility could play a role in its ecological interactions, including its potential symbiotic relationships with other microbial species. Overall, the traits of L. crispatus strain UMNLC11 crispatus9E6S24191 highlight its significance in host-associated microbiomes, with implications for understanding its contributions to microbial diversity and host health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYRB00000000.1 Bac0013667 Lactobacillus crispatus strain UMNLC12 crispatus9E7S25197 "Lactobacillus crispatus strain UMNLC12 crispatus9E7S25197 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is nonsporulating, indicating that it does not form spores as a means of survival under unfavorable conditions. It thrives optimally at a temperature of 37.0°C, which suggests a preference for warm, host-associated environments, potentially reflecting its adaptation to the mammalian gastrointestinal or urogenital tracts.↵↵As a facultative anaerobe, L. crispatus UMNLC12 crispatus9E7S25197 can grow in both the presence and absence of oxygen, allowing it to occupy various niches within host ecosystems. This metabolic versatility may enable the strain to effectively compete with other microbial inhabitants and contribute to the maintenance of a balanced microbial community.↵↵Given its association with host environments, L. crispatus UMNLC12 crispatus9E7S25197 may play a role in the fermentation of carbohydrates, producing lactic acid as a metabolic byproduct. This production can lower the pH of the local environment, potentially inhibiting the growth of pathogenic organisms and promoting a healthy microbiota. Understanding the specific interactions and contributions of this strain within its ecological niche could provide valuable insights into microbial dynamics and host health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYRC00000000.1 Bac0013668 Lactobacillus crispatus strain UMNLC19 SNF2W1B2M1S28196 "Lactobacillus crispatus strain UMNLC19 SNF2W1B2M1S28196 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism. This strain is nonsporulating and thrives optimally at 37.0 degrees Celsius, indicating its adaptation to host-associated environments, such as the gastrointestinal or urogenital tracts of mammals. ↵↵As a member of the Lactobacillus genus, this strain is likely involved in the fermentation of carbohydrates, leading to the production of lactic acid, which can contribute to the maintenance of a healthy microbiota. The ability to grow in the presence or absence of oxygen suggests that Lactobacillus crispatus UMNLC19 has metabolic flexibility, allowing it to exploit various ecological niches within the host. ↵↵The chain formation observed in this strain may enhance its ability to adhere to mucosal surfaces, potentially playing a role in colonization and competition with pathogenic microorganisms. This characteristic is particularly relevant in understanding the strain's potential contributions to maintaining homeostasis within the host microbiome. Overall, Lactobacillus crispatus strain UMNLC19 SNF2W1B2M1S28196 exemplifies the traits of beneficial microbes that may support host health through competitive exclusion and metabolic activity." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYRI00000000.1 Bac0013669 Lactobacillus crispatus strain UMNLC21 SNF2W1B3L3S29192 "Lactobacillus crispatus strain UMNLC21 SNF2W1B3L3S29192 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe, thriving optimally at 37.0°C. This strain is nonsporulating and is associated with host environments, indicating its potential role in symbiotic relationships within its ecological niche.↵↵As a member of the Lactobacillus genus, L. crispatus is known for its prevalence in various host-associated habitats, particularly in the human microbiome, where it contributes to maintaining microbial balance and gut health. The facultative anaerobic nature of this strain allows it to adapt to varying oxygen levels, which can be critical in diverse host environments where oxygen availability fluctuates.↵↵The chain formation observed in this strain may enhance its ability to colonize biological surfaces and form biofilms, which are important for its stability and resilience in host-associated habitats. These characteristics suggest that L. crispatus strain UMNLC21 SNF2W1B3L3S29192 could play a significant role in the modulation of host immune responses and the maintenance of microbial homeostasis, further underscoring its potential importance in probiotic applications or therapeutic interventions. Understanding the specific interactions and functionalities of this strain within its host environment may provide valuable insights into the broader dynamics of microbial communities and their influence on host health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYRK00000000.1 Bac0013670 Lactobacillus crispatus strain UMNLC22 SNF2W1B4M1S31199 "Lactobacillus crispatus strain UMNLC22 SNF2W1B4M1S31199 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This strain is nonsporulating and thrives optimally at a temperature of 37.0 °C, which aligns with its habitat as host-associated, suggesting an adaptation to warm-blooded hosts. ↵↵Lactobacillus crispatus is generally recognized for its role in maintaining a balanced microbiota, particularly in the human gastrointestinal and urogenital tracts. The facultative anaerobic nature of strain UMNLC22 SNF2W1B4M1S31199 indicates that it can survive in both aerobic and anaerobic environments, which may be advantageous for colonization in diverse host tissues where oxygen levels can vary.↵↵The arrangement of cells in chains may facilitate interactions with other microbial species and enhance persistence in its niche. This structural trait could play a role in the strain's ability to form biofilms or establish symbiotic relationships within the host. Overall, the specific characteristics of Lactobacillus crispatus strain UMNLC22 SNF2W1B4M1S31199 underscore its potential importance in microbiome dynamics and host health. Further studies may elucidate the specific functions and interactions of this strain within its ecological context." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 LYRL00000000.1 Bac0013671 Aeromonas sp. ANP5 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. ANP5 1535538 LYSS00000000.1 Bac0013672 Mesorhizobium sp. WSM3873 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. WSM3873 1854056 LYTM00000000.1 Bac0013673 Streptococcus bovimastitidis strain NZ1587 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus bovimastitidis microaerophile 1856638 LZDD00000000.1 Bac0013674 Tepidimonas fonticaldi strain PL17 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Tepidimonas Tepidimonas fonticaldi hot spring 1101373 LZDH00000000.1 Bac0013675 Moraxella nonliquefaciens strain CCUG 60284 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella nonliquefaciens 478 LZDN00000000.1 Bac0013676 Acinetobacter gandensis strain ANC 4275 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter gandensis aerobic 1443941 LZDS00000000.1 Bac0013677 Morganella psychrotolerans strain GCSL-P101 CFSAN046807_c_P101_9 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella psychrotolerans psychrotolerant 368603 LZEW00000000.1 Bac0013678 Vibrio sp. UCD-FRSSP16_10 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. UCD-FRSSP16_10 1853257 LZFX00000000.1 Bac0013679 Vibrio splendidus strain UCD-FRSSP16_15 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 LZGA00000000.1 Bac0013680 Gilliamella sp. wkB178 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. wkB178 3120259 LZGK00000000.1 Bac0013681 Gilliamella sp. wkB308 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. wkB308 3120263 LZGN00000000.1 Bac0013682 Gilliamella sp. App2-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. App2-1 3120230 LZGR00000000.1 Bac0013683 Gilliamella sp. WF3-4 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. WF3-4 3120255 LZGW00000000.1 Bac0013684 Gilliamella sp. Bif1-4 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. Bif1-4 3120233 LZHC00000000.1 Bac0013685 Gilliamella sp. wkB18 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. wkB18 3120260 LZHM00000000.1 Bac0013686 Gilliamella sp. Nev6-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. Nev6-6 3120252 LZHP00000000.1 Bac0013687 Mycobacterium sp. ACS4054 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ACS4054 1834119 LZHV00000000.1 Bac0013688 Mycobacterium sp. ACS4331 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ACS4331 1834121 LZHW00000000.1 Bac0013689 Mycobacterium sp. ACS1612 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ACS1612 1834117 LZHZ00000000.1 Bac0013690 Mycobacterium sp. 852002-51971_SCH5477799-a Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-51971_SCH5477799-a 1834106 LZIF00000000.1 Bac0013691 Mycobacterium sp. 852014-52450_SCH5900713 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852014-52450_SCH5900713 1834116 LZIL00000000.1 Bac0013692 Mycobacterium sp. 852002-51057_SCH5723018 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852002-51057_SCH5723018 1834094 LZIR00000000.1 Bac0013693 Mycobacterium sp. E3198 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E3198 1834143 LZIS00000000.1 Bac0013694 Mycobacterium sp. E1214 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E1214 1834123 LZJC00000000.1 Bac0013695 Mycobacterium sp. E1747 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E1747 1834128 LZJI00000000.1 Bac0013696 Mycobacterium sp. E1715 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E1715 1856863 LZJJ00000000.1 Bac0013697 Mycobacterium sp. E1319 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E1319 1834124 LZJL00000000.1 Bac0013698 Mycobacterium colombiense strain E2464 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium colombiense 339268 LZJS00000000.1 Bac0013699 Mycobacterium scrofulaceum strain E2838 "Mycobacterium scrofulaceum strain E2838 is a rod-shaped bacterium belonging to the genus Mycobacterium, which is characterized by its complex cell wall structure and unique lipid composition. This strain, like others in its genus, is expected to exhibit a high degree of resilience in various environmental conditions, owing to its thick peptidoglycan layer and mycolic acid components that contribute to its hydrophobicity and resistance to desiccation. ↵↵As a member of the Mycobacteriaceae family, M. scrofulaceum is often studied for its environmental adaptability and potential roles in microbial communities. While specific pathogenicity traits for strain E2838 are not available, members of this genus are known for their diverse ecological niches, often found in soil and water environments. ↵↵The rod shape of M. scrofulaceum strain E2838 suggests a possible adaptation to filamentous growth patterns, which may enhance its ability to colonize various surfaces or interact with other microorganisms in its habitat. This morphological trait could facilitate nutrient acquisition and biofilm formation, potentially contributing to its ecological role in nutrient cycling within its environment. Understanding these characteristics can provide insights into the functional dynamics of microbial communities where M. scrofulaceum is present, highlighting its significance in ecosystem processes." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium scrofulaceum Rod 1783 LZJY00000000.1 Bac0013700 Mycobacterium sp. E2733 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E2733 1834138 LZJZ00000000.1 Bac0013701 Mycolicibacter sinensis strain E1876 "Mycolicibacter sinensis strain E1876 is a Gram-positive, rod-shaped bacterium that exhibits a singular arrangement of cells. As a nonsporulating organism, it relies on its aerobic metabolism for growth and survival, indicating a preference for environments enriched with oxygen. This strain is associated with host environments, suggesting a potential symbiotic or commensal relationship with its host organism.↵↵The distinct morphological and physiological traits of Mycolicibacter sinensis strain E1876 may reflect adaptations to its specific ecological niche, where it likely interacts with host immune systems and local microbial communities. The aerobic nature of this strain hints at its ability to thrive in oxygen-rich environments, which might be indicative of specific niches within host tissues or fluids. Understanding the ecological roles and potential interactions of this strain could provide insights into its function within host-associated microbiomes, as well as its contributions to the overall microbial diversity in such environments. Further exploration of Mycolicibacter sinensis strain E1876 may reveal unique biological processes that underscore its significance in host-associated habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter sinensis Positive Rod No 1 1 Aerobic Mesophilic HostAssociated Free living Singles Nonsporulating 875328 LZKG00000000.1 Bac0013702 Mycobacterium sp. E1386 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E1386 1834126 LZKH00000000.1 Bac0013703 Mycobacterium colombiense strain E1334 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium colombiense 339268 LZKI00000000.1 Bac0013704 Mycobacterium kyorinense strain E861 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium kyorinense 487514 LZKJ00000000.1 Bac0013705 Mycobacterium sp. E796 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E796 1834151 LZKK00000000.1 Bac0013706 Mycobacterium sp. E740 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. E740 1834149 LZKP00000000.1 Bac0013707 Mycobacterium sp. 1245805.9 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1245805.9 1856862 LZKR00000000.1 Bac0013708 Mycobacterium sp. 1465703.0 strain 1465703 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1465703.0 1834078 LZKU00000000.1 Bac0013709 Mycobacterium sp. 1245801.1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1245801.1 1834075 LZKY00000000.1 Bac0013710 Mycolicibacterium mucogenicum strain 1127319.6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium mucogenicum 56689 LZLC00000000.1 Bac0013711 Mycobacterium marseillense strain 1165549.7 "Mycobacterium marseillense strain 1165549.7 is a Gram-positive bacterium belonging to the genus Mycobacterium, which is characterized by its robust cell wall structure. This strain is part of a group of bacteria known for their complex lipid-rich membranes, which contribute to their resistance to certain environmental stresses and can influence their growth and survival in diverse conditions. ↵↵As a member of the Mycobacterium genus, strain 1165549.7 may exhibit slow growth rates typical of mycobacterial species, necessitating specific culture conditions for optimal propagation. The Gram-positive nature indicates the presence of thick peptidoglycan layers in its cell wall, a feature that is often associated with various physiological and biochemical properties that can affect its behavior in different environments.↵↵Recent studies have highlighted the potential ecological significance of various Mycobacterium species, including their roles in soil and water environments, where they can participate in biogeochemical cycles. This particular strain may be involved in nutrient cycling or contribute to the microbial diversity found in its native habitat. Additional investigations into its metabolic capabilities and interactions with other microorganisms could provide deeper insights into its ecological role and potential applications in bioremediation or other biotechnological fields." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium marseillense Gram-positive 701042 LZLI00000000.1 Bac0013712 Mycobacterium sp. 1274756.6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1274756.6 1834076 LZLJ00000000.1 Bac0013713 Mycobacterium asiaticum strain 1276495.2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium asiaticum environmental water 1790 LZLM00000000.1 Bac0013714 Mycobacterium asiaticum strain 1165133.8 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium asiaticum environmental water 1790 LZLS00000000.1 Bac0013715 Mycobacterium sp. 1245111.1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 1245111.1 1834073 LZLV00000000.1 Bac0013716 Mycobacterium colombiense strain 1137323.0 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium colombiense 339268 LZMA00000000.1 Bac0013717 Mycolicibacter sinensis strain 1274684.2 "Mycolicibacter sinensis strain 1274684.2 is a Gram-positive, aerobic bacterium characterized by its rod shape and existence as single cells, rather than in clusters or filaments. This strain does not exhibit sporulation, indicating a reliance on other survival strategies in its host-associated habitat. The aerobic nature of Mycolicibacter sinensis suggests that it requires oxygen for its metabolic processes, which may influence its ecological niche within host environments.↵↵The host-associated habitat indicates a potential symbiotic relationship or a specific adaptation to living conditions in or on a host organism. Understanding the ecological role of Mycolicibacter sinensis strain 1274684.2 within its habitat may provide insights into its interactions with host immune systems or its contributions to host metabolism. This reflects the broader significance of Mycolicibacter species in microbial ecosystems, especially in contexts where they may influence host health or disease dynamics. Further exploration of this strain may reveal its functional roles in microbial communities and its potential implications for host biology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter sinensis Positive Rod No 1 1 Aerobic Mesophilic HostAssociated Free living Singles Nonsporulating 875328 LZMF00000000.1 Bac0013718 Gordonia sp. 852002-51296_SCH5728562-b Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. 852002-51296_SCH5728562-b 1834101 LZMI00000000.1 Bac0013719 Moraxella lacunata strain CCUG 57757A Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella lacunata 477 LZMS00000000.1 Bac0013720 Moraxella atlantae strain CCUG 66109 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola atlantae 34059 LZMZ00000000.1 Bac0013721 Moraxella atlantae strain CCUG 59586 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola atlantae 34059 LZNA00000000.1 Bac0013722 Ruegeria sp. PBVC088 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. PBVC088 1858797 LZNT00000000.1 Bac0013723 Haemophilus sp. CCUG 60358 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus sp. CCUG 60358 1859695 LZOZ00000000.1 Bac0013724 Methanobrevibacter sp. A27 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. A27 1860099 LZPL00000000.1 Bac0013725 Methanobacterium sp. A39 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. A39 1860100 LZPM00000000.1 Bac0013726 Streptomyces sp. IB2014 011-1 STIB_31 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. IB2014 011-1 1844478 LZQS00000000.1 Bac0013727 Bacillus anthracis strain L19 "Bacillus anthracis strain L19 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, enabling it to endure adverse environmental conditions. This strain thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotroph, deriving its energy from organic compounds. As a facultative anaerobe, Bacillus anthracis strain L19 can grow in both aerobic and anaerobic environments, which enhances its adaptability to various ecological niches.↵↵The natural habitat of this strain is primarily soil, where it plays a role in nutrient cycling and interacts with other soil microorganisms. The sporulation capability of B. anthracis strain L19 is particularly significant, as it allows this bacterium to form resilient endospores that can survive extreme conditions, including desiccation and nutrient deprivation. This trait not only aids in its survival but also facilitates its dissemination in the environment.↵↵Overall, Bacillus anthracis strain L19 exemplifies a microbe adapted to soil ecosystems, where it likely contributes to the complex interactions among microbial communities. Its ability to switch between aerobic and anaerobic metabolisms may also reflect a competitive advantage in fluctuating soil conditions, allowing it to occupy a vital ecological niche in diverse environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 LZQW00000000.1 Bac0013728 Bacillus anthracis strain N1ZF-2 "Bacillus anthracis strain N1ZF-2 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives optimally at 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, which it metabolizes in its preferred soil habitat. Notably, Bacillus anthracis is classified as a facultative anaerobe, allowing it to utilize both aerobic and anaerobic respiration depending on the availability of oxygen in its environment.↵↵The ability to sporulate is a significant trait of this strain, enabling it to survive in harsh conditions by forming resilient spores that can withstand extreme temperatures and desiccation. This adaptation is particularly advantageous for persistence in soil, where varying environmental conditions can occur.↵↵Understanding the ecological role of Bacillus anthracis strain N1ZF-2 in soil ecosystems may provide insights into nutrient cycling processes, as its metabolic activities could influence the availability of organic matter and the dynamics of soil microbial communities. Its presence in soil environments illustrates the complex interactions between microbial life and abiotic factors, underscoring the importance of studying such microbes to comprehend their contributions to ecosystem functions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 LZQX00000000.1 Bac0013729 Bacillus cereus strain A8S3 "Bacillus cereus strain A8S3 is a Gram-positive, rod-shaped bacterium that commonly arranges itself in chains and is categorized as an aerobic microorganism. This strain thrives at an optimal temperature of 25.0°C, suggesting a preference for moderate environmental conditions. The habitat of Bacillus cereus strain A8S3 is diverse, indicating its adaptability to various ecological niches.↵↵As a member of the Bacillus genus, strain A8S3 likely possesses the ability to form endospores, a characteristic trait that aids in survival under unfavorable environmental conditions, although this specific trait is not confirmed in the available data. The aerobic nature of this strain implies that it requires oxygen for growth, which may influence its distribution in environments rich in oxygen, such as soils and decaying organic matter.↵↵The ecological versatility of Bacillus cereus strain A8S3 may facilitate its role in nutrient cycling, particularly in the decomposition of organic materials. This adaptability not only underscores the ecological significance of this strain in various habitats but also suggests potential interactions with other microorganisms within its environment, contributing to the complexity of microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 LZQY00000000.1 Bac0013730 Gelidibacter algens strain ACAM 536 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Gelidibacter Gelidibacter algens 49280 LZRN00000000.1 Bac0013731 Bizionia sp. APA-3 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Bizionia Bizionia sp. APA-3 1861784 LZRO00000000.1 Bac0013732 Bacillus thermozeamaize Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thermozeamaize 230954 LZRT00000000.1 Bac0013733 Thermobacillus sp. ZCTH02-B1 BIN01_NODE9445488187 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Thermobacillus Thermobacillus sp. ZCTH02-B1 1858795 LZRU00000000.1 Bac0013734 Bacillus sp. I-2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. I-2 1857572 LZRW00000000.1 Bac0013735 Mycolicibacterium setense strain 852014-10208_SCH5295773 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium setense 431269 LZSL00000000.1 Bac0013736 Mycolicibacterium peregrinum strain 852002-51209_SCH5440388 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium peregrinum environment 43304 LZSO00000000.1 Bac0013737 Mycobacterium sp. 852014-50255_SCH5639931 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. 852014-50255_SCH5639931 1834112 LZSV00000000.1 Bac0013738 Mesorhizobium loti strain R7ANS::ICEMlSym2042 "Mesorhizobium loti strain R7ANS::ICEMlSym2042 is a Gram-negative, rod-shaped bacterium classified within the Rhizobiaceae family. This strain exhibits aerobic metabolic capabilities, indicating its dependence on oxygen for growth and energy production. Mesorhizobium loti is known to inhabit diverse environments, suggesting a versatile adaptability to various habitats. ↵↵As a member of the Mesorhizobium genus, this strain is particularly noted for its role in symbiotic relationships with leguminous plants, facilitating nitrogen fixation, which is critical for soil fertility. The presence of strain R7ANS::ICEMlSym2042 within these ecosystems points to its potential contributions to both plant health and agricultural sustainability. ↵↵The ecological significance of this bacterium extends beyond its symbiotic interactions, as its ability to thrive in multiple habitats underscores the importance of microbial diversity in maintaining ecosystem functions. Further studies on this strain may reveal insights into its adaptability mechanisms, which could enhance our understanding of microbial resilience in changing environmental conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 381 LZTJ00000000.1 Bac0013739 Erythrobacter dokdonensis DSW-74 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter dokdonensis 1300349 LZYB00000000.1 Bac0013740 Clostridium beijerinckii strain ATCC 39058 "Clostridium beijerinckii strain ATCC 39058 is a Gram-positive, rod-shaped bacterium that typically exists as single cells or in pairs. This strain is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which aligns with its adaptation to anaerobic environments. C. beijerinckii strain ATCC 39058 is primarily found in freshwater habitats and soil, where it plays a role in the degradation of organic matter.↵↵As an obligate anaerobe, this strain thrives in environments devoid of oxygen, utilizing fermentation pathways to metabolize various substrates. Its ability to survive and grow in such conditions underscores its significance in biogeochemical cycles, particularly in nutrient recycling processes within its natural habitats. The metabolic capabilities of C. beijerinckii strain ATCC 39058 suggest potential applications in biotechnology, particularly in bioconversion and biofuel production, as it can ferment sugars to produce solvents such as butanol.↵↵Understanding the ecological role of C. beijerinckii strain ATCC 39058 enhances our insight into the complex interactions within soil and freshwater ecosystems. Given its anaerobic lifestyle and organic matter utilization, this strain may contribute to maintaining soil health and fertility, thereby influencing plant growth and ecosystem productivity." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1520 LZZF00000000.1 Bac0013741 Clostridium beijerinckii strain DSM 53 "Clostridium beijerinckii strain DSM 53 is a Gram-positive, rod-shaped bacterium known for its anaerobic metabolism and chemoorganotrophic energy acquisition. This strain typically exists in pairs or as single cells, highlighting its versatile adaptive strategies in various environments. C. beijerinckii is commonly found in freshwater habitats and soil, where it plays a significant role in the degradation of organic matter. ↵↵As an anaerobe, C. beijerinckii thrives in low-oxygen environments, which are prevalent in certain soil profiles and sediment layers of freshwater ecosystems. Its metabolic processes contribute to nutrient cycling, particularly in the breakdown of complex organic compounds, which can enhance soil fertility and support plant growth. Furthermore, the presence of this bacterium in these habitats suggests its potential involvement in biogeochemical processes, such as carbon and nitrogen cycling, which are crucial for maintaining ecosystem health.↵↵Overall, the ecological role of Clostridium beijerinckii strain DSM 53 underscores its importance in organic matter decomposition and nutrient recycling in anaerobic environments, making it a valuable organism for further study in microbial ecology and environmental microbiology." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1520 LZZI00000000.1 Bac0013742 Pseudoterranova decipiens hemoglobin mRNA "Pseudoterranova decipiens hemoglobin mRNA represents a component of a Gram-negative, rod-shaped bacterium characterized by its single-cell arrangement and heterotrophic energy metabolism. This organism thrives in a variety of habitats, showcasing its adaptability to different environmental conditions. As an aerobe, Pseudoterranova decipiens requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability is variable.↵↵The presence of hemoglobin mRNA suggests that this microbe may possess a specialized mechanism for oxygen transport or storage, potentially allowing it to thrive in oxygen-limited niches or during fluctuating oxygen conditions. This trait could provide insights into the organism's adaptations to diverse ecological contexts, including its potential roles in biogeochemical cycling or interactions within microbial communities. Understanding the functional implications of hemoglobin production in Pseudoterranova decipiens may reveal important aspects of its physiology and ecological interactions." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles M63298 Bac0013743 Colwellia psychrerythraea "Colwellia psychrerythraea is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is notably adapted to specialized habitats, where it can survive and grow optimally at a temperature of approximately 8.0°C.↵↵The physiological characteristics of C. psychrerythraea suggest its potential role in cold environments, possibly contributing to biogeochemical cycles in polar and deep-sea ecosystems. Its facultative anaerobic capability may confer an advantage in fluctuating oxygen conditions, enabling it to utilize various substrates for energy production. The specific adaptations of C. psychrerythraea to low temperatures and specialized habitats underscore its importance in studying microbial life in extreme environments. This bacterium exemplifies the resilience and versatility of microorganisms in adapting to and thriving under challenging conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea Negative Rod Yes 1 2 Facultatively anaerobe 8 Psychrophilic Specialized Free living Singles 28229 MAAF00000000.1 Bac0013744 Methylophaga sp. 42_25_T18 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga sp. 42_25_T18 1856285 MAAJ00000000.1 Bac0013745 Cycloclasticus sp. 46_120_T64 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Cycloclasticus Cycloclasticus sp. 46_120_T64 1856281 MAAM00000000.1 Bac0013746 Flavobacteriales bacterium 33_180_T64 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriales bacterium 33_180_T64 1856290 MAAQ00000000.1 Bac0013747 Gammaproteobacteria bacterium 53_120_T64 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium 53_120_T64 1856295 MAAT00000000.1 Bac0013748 Rhodobacterales bacterium 59_46_T64 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium 59_46_T64 1856300 MAAZ00000000.1 Bac0013749 Thalassotalea sp. 42_200_T64 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea sp. 42_200_T64 1856287 MABC00000000.1 Bac0013750 Pseudomonas sp. AU12215 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. AU12215 1860123 MACM00000000.2 Bac0013751 Methanohalophilus sp. DAL1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus sp. DAL1 1864608 MAFX00000000.1 Bac0013752 Dissulfuribacter thermophilus strain S69 "Dissulfuribacter thermophilus strain S69 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. As a non-spore-forming microorganism, it relies on a stable environment for survival and reproduction. The anaerobic nature of D. thermophilus suggests that it plays a role in sulfate-reducing processes, which are crucial in various anaerobic ecosystems, particularly those rich in organic substrates. ↵↵The optimal temperature of 45.0°C indicates that this strain is well-adapted to thermophilic environments, such as heated sediments or hydrothermal vents, where temperatures exceed those typically found in mesophilic conditions. The presence of this organism in such extreme environments may contribute to biogeochemical cycles, particularly in the reduction of sulfur compounds, which can influence the availability of nutrients and overall ecosystem dynamics. Further studies on D. thermophilus S69 could provide insights into its metabolic pathways and potential applications in bioremediation or bioenergy production, particularly in processes that exploit anaerobic thermophilic conditions." Pseudomonadati Thermodesulfobacteriota Dissulfuribacteria Dissulfuribacterales Dissulfuribacteraceae Dissulfuribacter Dissulfuribacter thermophilus Gram-negative rod anaerobic 45 thermophilic non-spore-forming 1156395 MAGO00000000.1 Bac0013753 Elizabethkingia anophelis strain F3543 "Elizabethkingia anophelis strain F3543 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits aerobic metabolism as a chemoheterotroph. This strain is capable of utilizing a variety of organic compounds as energy sources, highlighting its adaptability to diverse environments. E. anophelis has been identified in multiple habitats, indicating its ecological versatility, although specific environmental niches remain to be characterized.↵↵The ability of E. anophelis strain F3543 to thrive in aerobic conditions suggests a potential role in biodegradation processes or in the cycling of nutrients within its habitats. The strain's nonsporulating nature may influence its ecological interactions, as it relies on its active growth phase for survival rather than forming resistant spores. Further studies on this strain could provide insights into its metabolic pathways and ecological functions, contributing to our understanding of microbial diversity and adaptation in varying environmental contexts." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia anophelis Negative Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1117645 MAHT00000000.1 Bac0013754 Elizabethkingia ursingii strain G4123 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia ursingii 1756150 MAIC00000000.1 Bac0013755 Mycolicibacterium sp. (ex Dasyatis americana) strain Dasyatis Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sp. (ex Dasyatis americana) 1866905 MAIH00000000.1 Bac0013756 Paenibacillus sp. KS1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. KS1 1849249 MAIS00000000.1 Bac0013757 Thalassospira sp. KO164 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira sp. KO164 1798192 MAJC00000000.1 Bac0013758 Halomonas elongata strain HEK1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas elongata 2746 MAJD00000000.1 Bac0013759 Aliivibrio fischeri strain 5F97 "Aliivibrio fischeri strain 5F97 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. A. fischeri strain 5F97 exhibits heterotrophic metabolism, utilizing organic compounds as its energy source, which reflects its adaptability to diverse habitats.↵↵The optimal growth temperature for A. fischeri strain 5F97 is around 20.0°C, suggesting a preference for cooler environments, potentially aligning with its natural habitats in marine ecosystems. The strain's ability to grow under varying oxygen conditions may contribute to its ecological versatility, allowing it to occupy various niches within its habitat.↵↵One interesting aspect of A. fischeri species, including strain 5F97, is their potential role in symbiotic relationships, particularly in marine organisms. While specific interactions of this strain have not been detailed, the genus Aliivibrio is known for its associations with bioluminescent marine species, which may hint at a broader ecological significance. The adaptability of strain 5F97 to multiple habitats alongside its metabolic flexibility underscores its potential contribution to nutrient cycling in aquatic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio fischeri Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Symbiotic Singles Non-pathogenic 668 MAJN00000000.1 Bac0013760 Aliivibrio logei strain 1S159 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio logei aerobic 688 MAJU00000000.1 Bac0013761 Vibrio genomosp. F10 strain 9CSC122 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio genomosp. F10 723171 MAJZ00000000.1 Bac0013762 Vibrio lentus strain 5F79 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus 136468 MAKA00000000.1 Bac0013763 Domibacillus iocasae strain DSM 29979 "Domibacillus iocasae strain DSM 29979 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under aerobic conditions. This strain demonstrates optimal growth at a temperature of 37.0°C, which suggests that it is well-adapted to physiological temperature ranges found in warm-blooded hosts or environments. ↵↵The Gram-positive nature of D. iocasae indicates a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environments. The ability to form spores allows this microbe to withstand adverse conditions, potentially aiding in its survival and dissemination in diverse ecological niches.↵↵While the specific ecological role of D. iocasae strain DSM 29979 remains to be fully elucidated, its aerobic metabolism suggests a potential involvement in carbon cycling processes, particularly in oxygen-rich environments. The characteristics of this strain point to its possible applications in biotechnology or environmental microbiology, particularly in processes that harness aerobic microbial activity for the degradation of organic materials or in bioremediation efforts. Further studies could reveal its specific functions and interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Domibacillus Domibacillus iocasae Gram-positive rod motile aerobic 37 mesophilic spore-forming 1714016 MAMP00000000.1 Bac0013764 Helicobacter sp. CLO-3 strain HMC1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. CLO-3 211 MAMQ00000000.1 Bac0013765 Bacillus albus strain N35-10-2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus albus 2026189 MAOE00000000.1 Bac0013766 Pandoraea sp. ISTKB Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea sp. ISTKB 1586708 MAOS00000000.1 Bac0013767 Agrobacterium pusense strain CCGM11 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium pusense 648995 MAPG00000000.1 Bac0013768 Acetobacter pasteurianus strain BCRC 14118 "Acetobacter pasteurianus strain BCRC 14118 is a Gram-negative, nonsporulating bacterium classified as a chemoheterotroph, which thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 30.0°C and is primarily isolated from dairy habitats. ↵↵As a member of the Acetobacter genus, A. pasteurianus is notable for its role in the fermentation processes associated with vinegar production and the conversion of ethanol to acetic acid. Its ability to utilize a range of organic substrates positions it as a significant player in dairy fermentation ecosystems, where it may contribute to the flavor and preservation of fermented dairy products. ↵↵Understanding the metabolic pathways and growth conditions of A. pasteurianus strain BCRC 14118 can provide insights into its potential applications in food biotechnology, particularly in enhancing the fermentation processes in dairy industries. The ecological niche occupied by this strain highlights its importance in maintaining the balance of microbial communities in dairy environments, potentially influencing both product quality and safety." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 438 MAPU00000000.1 Bac0013769 Haemophilus parainfluenzae strain ATCC 9796 "Haemophilus parainfluenzae strain ATCC 9796 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic metabolic capabilities. This microbe is primarily host-associated, indicating a close relationship with its host organisms, which may include humans and other mammals. ↵↵H. parainfluenzae is known to inhabit mucosal surfaces, particularly in the respiratory tract, where it may contribute to the overall microbial flora. Its ability to thrive in both aerobic and anaerobic environments suggests a versatile metabolic strategy, allowing it to adapt to varying oxygen levels present in host tissues. This adaptability may play a role in its persistence within host-associated environments.↵↵While H. parainfluenzae is generally considered non-pathogenic, its presence in the human microbiome highlights its potential importance in maintaining microbial balance and supporting host health. Further research may elucidate its specific functional roles in these communities, particularly regarding its interactions with other microorganisms and its contributions to host immunity. Understanding the ecology of H. parainfluenzae may provide insights into the dynamics of the respiratory microbiome and the factors that influence microbial community structure in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 729 MAQD00000000.1 Bac0013770 Bacillus sp. FJAT-27264 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-27264 1850362 MAQW00000000.1 Bac0013771 Bacillus sp. FJAT-26390 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-26390 1743142 MAQX00000000.1 Bac0013772 Acidithiobacillus ferrivorans strain YL15 Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrivorans 160808 MASQ00000000.1 Bac0013773 Desulfosporosinus sp. BG Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus sp. BG 79206 MASS00000000.1 Bac0013774 Actinobaculum suis strain C1-9-1 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum suis anaerobic 1657 MASY00000000.1 Bac0013775 Bifidobacterium adolescentis strain Km 4 "Bifidobacterium adolescentis strain Km 4 is a Gram-positive, non-sporulating rod-shaped bacterium that exhibits a single-cell arrangement and thrives in anaerobic environments. This strain is optimally active at a temperature of 37.0°C, which aligns with its habitat, as it is primarily associated with host organisms, particularly in the gastrointestinal tract. ↵↵Bifidobacterium adolescentis is part of a group of bacteria known for their beneficial roles in gut health, contributing to the maintenance of a balanced intestinal microbiota. The strictly anaerobic nature of this strain suggests it plays a significant role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for gut health and may influence host metabolism and immune responses.↵↵The ability of Bifidobacterium adolescentis strain Km 4 to thrive within the host-associated environment highlights its potential importance in symbiotic relationships with the host, particularly in the modulation of gut microbiota composition. This strain may also reflect broader ecological interactions within the gut, as it helps maintain homeostasis and supports the health of the host by competing with pathogenic microorganisms. Understanding the specific roles and behaviors of such strains can provide insights into the complex dynamics of the gut microbiome and their potential applications in probiotic therapies." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 MAXD00000000.1 Bac0013776 Chryseobacterium artocarpi strain UTM-3 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium artocarpi 1414727 MAYH00000000.1 Bac0013777 Candidatus Scalindua rubra Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Scalinduaceae Candidatus Scalindua Candidatus Scalindua rubra 1872076 MAYW00000000.1 Bac0013778 Promethearchaeota archaeon CR_4 Promethearchaeati Promethearchaeota Promethearchaeota archaeon CR_4 1849166 MBAA00000000.1 Bac0013779 Acinetobacter celticus strain ANC 4603 "Acinetobacter celticus strain ANC 4603 is a Gram-negative, spherical bacterium characterized by its distinctive morphology and cell wall structure. As a member of the Acinetobacter genus, this strain displays the typical attributes associated with Gram-negative bacteria, including a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. The spherical shape suggests a potential adaptation to specific environmental conditions, which may influence its metabolic capabilities and interactions within its habitat.↵↵Research on Acinetobacter species has highlighted their versatility and resilience in various environments, often leading to their prevalence in soil and water. While the ecological role of Acinetobacter celticus strain ANC 4603 remains to be fully elucidated, its Gram-negative classification and spherical morphology may confer certain advantages in microbial competition and nutrient acquisition. This strain could potentially contribute to biogeochemical cycling within its ecosystem, although further studies are needed to clarify its specific functions and interactions.↵↵Understanding the traits of Acinetobacter celticus strain ANC 4603 may provide insights into the ecological strategies employed by this bacterium. Its unique morphological characteristics could facilitate survival in diverse environments, suggesting a role in microbial community dynamics that warrants further investigation." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter celticus Gram-negative sphere 1891224 MBDL00000000.1 Bac0013780 Mycobacterium malmoense strain E3012 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium malmoense 1780 MBEE00000000.1 Bac0013781 Mycolicibacter heraklionensis strain NS-7503 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter heraklionensis 512402 MBEL00000000.1 Bac0013782 Mycobacterium colombiense strain IS-576 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium colombiense 339268 MBEP00000000.1 Bac0013783 Mycobacterium sp. GA-1841 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. GA-1841 1834154 MBEQ00000000.1 Bac0013784 Agrobacterium vitis strain AT6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Gillisella Gillisella vitis 373 MBEX00000000.2 Bac0013785 Pluralibacter gergoviae strain C7B "Pluralibacter gergoviae strain C7B is a Gram-negative, rod-shaped bacterium. This morphological classification suggests that the organism possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of Gram-negative bacteria. The rod shape can influence the bacterium's motility and surface interactions, potentially affecting its ecological niche and adaptability in various environments. ↵↵As a member of the genus Pluralibacter, which is known for its diverse metabolic capabilities, strain C7B may exhibit unique biochemical pathways that allow it to utilize a variety of substrates for growth and energy. The Gram-negative nature of this strain implies it may have mechanisms to resist certain environmental stresses, such as antibiotics or changes in osmotic pressure, which can be advantageous in fluctuating conditions.↵↵The specific ecological role of Pluralibacter gergoviae strain C7B remains to be fully elucidated; however, its rod shape and Gram-negative characteristics suggest that it could play a role in nutrient cycling or organic matter decomposition in its native habitat. Given these traits, strain C7B may contribute to microbial communities in soil or aquatic environments, where its interactions with other microorganisms could influence ecosystem dynamics. Further investigation into the metabolic capabilities and ecological interactions of this strain could provide insights into its functional roles within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter Pluralibacter gergoviae negative Rod 61647 MBGD00000000.1 Bac0013786 Helicobacter pylori strain 3053 "Helicobacter pylori strain 3053 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in microaerophilic conditions, indicating a specific requirement for reduced oxygen levels, which is typical for members of the Helicobacter genus. The optimal growth temperature for strain 3053 is approximately 37.0°C, aligning with the physiological temperature of the human host, which suggests its adaptation to a host-associated habitat.↵↵As a member of the Helicobacter genus, strain 3053 is typically found in the gastric environment of mammals, where it might play a role in specific digestive processes. Its microaerophilic nature likely facilitates its survival in the gastric niche, where oxygen levels are lower than in the external environment but are essential for its metabolic functions. The presence of this strain in the host-associated habitat reflects the evolutionary adaptations of Helicobacter species to persist in the acidic conditions of the stomach.↵↵Understanding the specific traits of Helicobacter pylori strain 3053 can provide insights into its ecological role in the gastric microbiota, particularly in relation to its interactions with the host's immune system and potential influences on gastrointestinal health. Further research may elucidate the implications of its unique physiological characteristics in relation to host-microbe interactions and overall gut ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGO00000000.1 Bac0013787 Helicobacter pylori strain 22317 "Helicobacter pylori strain 22317 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its typical habitat within the host's gastric environment. As a member of the Helicobacter genus, it is well adapted to survive in the acidic conditions of the stomach, where it plays a role in various physiological and potential pathological processes.↵↵The microaerophilic nature of Helicobacter pylori strain 22317 indicates its requirement for reduced oxygen levels for optimal growth, which is consistent with its ecological niche in the gastrointestinal tract. Its spiral morphology is thought to facilitate motility through the mucus layer of the stomach lining, potentially aiding its colonization and persistence in this challenging environment.↵↵Studies on Helicobacter pylori have revealed its unique adaptations to the host's gastric conditions, including the production of urease, which enables the neutralization of gastric acid, thus enhancing its survival. The ecological implications of this strain underline the intricate relationships between host and microbe, suggesting that Helicobacter pylori may play a complex role in gastric health and disease dynamics. Understanding these interactions can provide insights into the broader impacts of gastric microbiota on host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGQ00000000.1 Bac0013788 Helicobacter pylori strain 22211 "Helicobacter pylori strain 22211 is a Gram-negative bacterium characterized by its distinctive spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the human body temperature, suggesting its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori strain 22211 requires reduced levels of oxygen for growth, indicating a specialized niche within the gastrointestinal tract where oxygen levels are lower than atmospheric concentrations.↵↵The microbe's unique morphological and physiological traits contribute to its survival and potential interactions within the host environment. The spiral shape may facilitate motility through the viscous mucus layer of the stomach, allowing it to colonize the gastric epithelium effectively. Additionally, its Gram-negative cell structure may provide a robust outer membrane that contributes to its resilience against the acidic conditions of the gastric environment.↵↵The habitat preference for host-associated environments suggests that H. pylori strain 22211 may play a role in the complex interplay of microbial communities within the human gut. This strain's microaerophilic requirement highlights the importance of localized oxygen gradients in microbial ecology, potentially influencing the broader dynamics of microbial interactions in the gastrointestinal ecosystem. Understanding the specific traits of H. pylori strain 22211 can provide insights into its ecological role and adaptive strategies within its host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGW00000000.1 Bac0013789 Helicobacter pylori strain 22095 "Helicobacter pylori strain 22095 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at 37.0 °C, aligning with the physiological temperature of its primary habitat—host-associated environments, specifically the gastric mucosa of humans. ↵↵As a member of the genus Helicobacter, strain 22095 exhibits typical traits of spirilla, which may contribute to its motility and ability to colonize the gastric niche. The microaerophilic requirement indicates that this bacterium prefers low levels of oxygen, which is consistent with its adaptation to the oxygen-limited conditions of the stomach. ↵↵The unique combination of these traits suggests that Helicobacter pylori strain 22095 is well-adapted to survive and proliferate in the acidic environment of the stomach, where it may play a role in the complex interactions within the gastric microbiome. Understanding the specific adaptations of strain 22095 could provide insights into the ecological roles of Helicobacter species in host-associated environments, particularly regarding their interactions with both the host immune system and other microbial inhabitants of the gastric niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBGY00000000.1 Bac0013790 Helicobacter pylori strain 22025 "Helicobacter pylori strain 22025 is a Gram-negative bacterium characterized by its spirilla shape and a single-cell arrangement. This microbe thrives optimally at 37.0°C, aligning with the human body temperature, which suggests its adaptation to a host-associated habitat. H. pylori is known to be microaerophilic, requiring reduced oxygen levels for growth, which is conducive to its colonization in the gastric environment of the host.↵↵The microbe's unique morphology and oxygen requirements reflect its specialized role within the gastrointestinal tract, where it can survive and proliferate in conditions that would be inhospitable to many other bacteria. Given its habitat and physiological traits, H. pylori strain 22025 may play a significant role in the complex microbial ecosystem of the stomach, potentially influencing local pH levels and contributing to the overall microbial diversity in this niche. Understanding the specific adaptations of this strain could provide insights into its interactions with host physiology and other microbial inhabitants of the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHB00000000.1 Bac0013791 Helicobacter pylori strain 3136 "Helicobacter pylori strain 3136 is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and single-cell arrangement. This strain thrives optimally at 37.0°C, which corresponds to the average human body temperature, indicating its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, strain 3136 is typically found in the gastric mucosa of mammals, where it may play a role in the complex interactions within the host's gastrointestinal microbiome. The microaerophilic nature of this bacterium suggests that it requires reduced levels of oxygen for growth, which aligns with the low-oxygen environment of the stomach. ↵↵Understanding the specific traits of Helicobacter pylori strain 3136 can provide insights into its metabolic pathways and survival mechanisms within the host. This strain's adaptation to a microaerophilic lifestyle and its optimal growth temperature reflect its evolutionary niche, potentially influencing the overall microbial diversity and functionality within the gastric ecosystem. The unique combination of traits exhibited by strain 3136 may also shed light on the evolutionary strategies employed by Helicobacter species to maintain their presence in the stomach, an environment characterized by fluctuating pH levels and varying oxygen concentrations." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHI00000000.1 Bac0013792 Helicobacter pylori strain 3133 "Helicobacter pylori strain 3133 is a Gram-negative bacterium characterized by its spirilla shape and singular cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found in the gastric environment of its host. As a microaerophilic organism, H. pylori strain 3133 requires reduced oxygen levels for growth, adapting to the oxygen gradient present in the stomach, where it is typically associated with the gastric mucosa.↵↵The habitat of H. pylori strain 3133 is notably host-associated, indicating a close relationship with its host organism, likely contributing to its survival and proliferation within the gastrointestinal tract. This adaptation may facilitate its ability to colonize and persist in a challenging environment characterized by varying pH levels and the presence of gastric acid.↵↵Understanding the specific traits of H. pylori strain 3133 provides valuable insights into its ecological niche and potential interactions within the host's microbiome. Its microaerophilic nature suggests it may play a role in the modulation of local oxygen levels, potentially influencing the dynamics of other microbial populations in the gastric environment. Consequently, the study of this strain could illuminate broader ecological interactions in host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHJ00000000.1 Bac0013793 Helicobacter pylori strain 3120 "Helicobacter pylori strain 3120 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is known to thrive in a microaerophilic environment, indicating its requirement for reduced oxygen levels, which is typical for species within the Helicobacter genus. The optimal growth temperature for strain 3120 is approximately 37.0°C, aligning with the physiological conditions found within the mammalian gastric environment, where it is host-associated.↵↵As a member of the Helicobacter genus, strain 3120 is likely to inhabit the gastric mucosa of its host, where it may play a role in the complex microbial ecology of the stomach. The adaptation to a host-associated habitat suggests that this strain has evolved specific metabolic and physiological traits that facilitate its survival and proliferation in the acidic conditions of the stomach, a characteristic environment for Helicobacter species. ↵↵The microaerophilic and temperature preferences of strain 3120 may also provide insights into its potential interactions within the host microbiome, particularly in relation to other microbial populations that inhabit the gastrointestinal tract. Understanding these traits can further illuminate the role of Helicobacter pylori strain 3120 in maintaining gastric health as well as its response to environmental changes within the host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHL00000000.1 Bac0013794 Helicobacter pylori strain 26084 "Helicobacter pylori strain 26084 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and singular cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, typically residing within the gastric mucosa of humans and other mammals. The microaerophilic nature of H. pylori strain 26084 indicates that it requires low levels of oxygen for growth, an adaptation that facilitates its survival in the oxygen-limited conditions of the stomach.↵↵The spiral morphology of H. pylori is thought to be instrumental in its motility, allowing the bacterium to navigate the viscous gastric environment and colonize the epithelial lining effectively. This unique shape, combined with its specific oxygen requirements, enables H. pylori strain 26084 to occupy a niche that is significantly different from other gastrointestinal microbes, many of which are facultative or obligate anaerobes.↵↵Additionally, the host-associated habitat of H. pylori suggests a complex interaction with the host's immune system and gastric environment, potentially influencing local microbiota and contributing to gastrointestinal health and disease dynamics. Understanding the ecological role of H. pylori strain 26084 within the gastric milieu may provide insights into its contributions to host metabolism and the overall microbial balance in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHX00000000.1 Bac0013795 Helicobacter pylori strain 26024 "Helicobacter pylori strain 26024 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and a tendency to occur as single cells. This strain thrives optimally at a temperature of 37.0°C, which reflects its adaptation to the warm environment of the human stomach, where it is typically found associated with its host. ↵↵As a member of the genus Helicobacter, strain 26024 displays the unique morphology of spirilla, which may play a role in its motility and ability to navigate through the viscous gastric mucus layer. The microaerophilic nature of this organism indicates that it requires reduced levels of oxygen for optimal growth, a condition that is prevalent in the gastric niche it inhabits. ↵↵The association of Helicobacter pylori with its host highlights its specialized habitat, which is critical for its survival and proliferation. Understanding the ecological dynamics of this strain may provide insights into its interactions within the gastrointestinal microbiome and its potential roles in influencing host physiology. Further studies could elucidate how strain 26024 adapts to the fluctuating conditions of the gastric environment, contributing to our broader understanding of microbial life in host-associated habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHY00000000.1 Bac0013796 Helicobacter pylori strain 24013 "Helicobacter pylori strain 24013 is a Gram-negative, spirilla-shaped bacterium that typically exists as single cells. This strain thrives in microaerophilic conditions, requiring a reduced oxygen environment for optimal growth. Its optimal temperature for growth is around 37.0°C, which corresponds to the body temperature of its primary hosts, including humans. ↵↵H. pylori strain 24013 is known to inhabit the gastrointestinal tract, illustrating its adaptation to a host-associated habitat. This unique ecological niche allows the bacterium to persist in the acidic environment of the stomach while evading the immune response of the host. The spiral shape of the bacterium, along with its motility, may facilitate its colonization and movement within the gastric mucus layer, enhancing its survival and establishment in the host environment.↵↵Given its specific adaptations to the microaerophilic conditions of the gastric environment, H. pylori strain 24013 plays a significant role in the complex interactions between gut microbiota and host physiology. Understanding the traits of this strain contributes to the broader knowledge of gastric microbial communities and their implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBHZ00000000.1 Bac0013797 Helicobacter pylori strain 22393 "Helicobacter pylori strain 22393 is a Gram-negative bacterium characterized by its spirilla shape and the arrangement of cells in singles. This microbe thrives optimally at a temperature of 37.0°C, which corresponds to the average human body temperature, suggesting its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori strain 22393 requires lower levels of oxygen for growth compared to atmospheric conditions, indicating its specialized niche within the gastric environment of its host. ↵↵The microaerophilic nature of this strain allows it to inhabit the gastric mucosa, where it can evade the immune response while utilizing the unique biochemical conditions present in the stomach. The specificity of its habitat and oxygen requirement may influence its metabolic processes and interactions with the host's microbiome. Understanding these traits provides insight into the ecological role of H. pylori strain 22393 in the human stomach, particularly in relation to its persistence and potential interactions with other microbial communities in the gastric environment. This specificity emphasizes the evolutionary adaptations of H. pylori to survive and thrive in a challenging microenvironment, reflecting the intricate relationships between host and microbial inhabitants." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBID00000000.1 Bac0013798 Helicobacter pylori strain 22390 "Helicobacter pylori strain 22390 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in host-associated habitats, indicating its reliance on living organisms for survival and growth. Optimal growth occurs at a temperature of 37.0°C, which aligns with the physiological temperature of the human stomach, its primary habitat. ↵↵H. pylori strain 22390 is classified as microaerophilic, meaning it requires reduced levels of oxygen for optimal growth, a trait that is conducive to its survival in the gastric environment where oxygen levels are lower than in the atmosphere. This organism's adaptation to a microaerophilic niche, along with its unique morphology, plays a crucial role in its ability to colonize the gastric epithelium.↵↵The ability of H. pylori strain 22390 to inhabit the acidic environment of the stomach, coupled with its specific oxygen requirements, underscores its evolutionary specialization to survive in a challenging biological niche. Understanding these traits can provide insights into the interactions between H. pylori and the host's gastrointestinal ecosystem, including potential impacts on gastric health and disease. Such insights may enhance our comprehension of the complex dynamics within host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIE00000000.1 Bac0013799 Helicobacter pylori strain 22385 "Helicobacter pylori strain 22385 is a Gram-negative bacterium characterized by its spirilla shape and presence as single cells. This microbe is microaerophilic, thriving under conditions with reduced oxygen levels, which reflects its adaptation to the host-associated habitat where it resides. Optimal growth occurs at a temperature of 37.0°C, aligning with the physiological conditions typically found within the human gastric environment.↵↵As a member of the Helicobacter genus, strain 22385 exhibits traits that suggest a specialized niche within the host's gastrointestinal tract, where it may play a role in complex microbial interactions. The microaerophilic nature of this strain indicates that it has evolved mechanisms to cope with low oxygen levels, which could influence its metabolic pathways and interactions with host tissues. ↵↵Further investigation into the unique adaptations of Helicobacter pylori strain 22385 may provide insights into its ecological role within the human microbiome and contribute to our understanding of host-microbe relationships in the gastric environment. This highlights the importance of studying strain-specific traits to fully elucidate the ecological dynamics and potential implications for human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIG00000000.1 Bac0013800 Helicobacter pylori strain 22377 "Helicobacter pylori strain 22377 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. It thrives optimally at 37.0°C, which aligns with the typical human body temperature, underscoring its adaptation to a host-associated habitat. This strain is part of a genus known for its association with gastric environments, often colonizing the stomach lining of mammals, including humans.↵↵The microaerophilic nature of H. pylori strain 22377 suggests that it requires reduced levels of oxygen for optimal growth, a trait that allows it to thrive in the relatively low oxygen tension found in the gastric mucosa. This adaptation may play a crucial role in its survival and persistence in a highly acidic environment, where it can influence local pH levels and metabolic processes.↵↵The ability to exist as individual cells rather than in clusters may enhance its mobility within the gastric niche, allowing for more effective colonization and adaptation to the host's immune responses. Understanding the physiological traits of H. pylori strain 22377 may provide insights into its ecological interactions within the gastric microbiome, particularly regarding its role in maintaining gastric health and its potential implications in gastric pathologies. The unique combination of its microaerophilic nature and spirilla morphology suggests a specialized adaptation to life within a dynamic and challenging host environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBII00000000.1 Bac0013801 Helicobacter pylori strain 22370 "Helicobacter pylori strain 22370 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to the human gastric environment. As a microaerophilic organism, H. pylori strain 22370 requires reduced oxygen levels for growth, reflecting its specialized niche within the host's stomach where oxygen concentrations are lower than in the atmosphere.↵↵The habitat of H. pylori strain 22370 is predominantly host-associated, indicating a close relationship with its human host, where it inhabits the gastric mucosa. This unique adaptation allows the bacterium to engage in complex interactions with the host's immune system and gastric environment, contributing to its survival and persistence.↵↵Understanding the specific traits of H. pylori strain 22370 enhances our knowledge of its physiological requirements and ecological role within the gastric microbiome. Notably, the microaerophilic nature of this strain may facilitate a distinct metabolic pathway that enables it to thrive in the acidic conditions of the stomach, highlighting the intricate balance of microbial life in host-associated environments. Further research into the metabolic capabilities and interactions of this strain could provide insights into its ecological significance in the human gut microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIK00000000.1 Bac0013802 Helicobacter pylori strain 22367 "Helicobacter pylori strain 22367 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, which suggests that it requires reduced levels of oxygen for optimal growth and metabolic function. Strain 22367 exhibits an optimal growth temperature of 37.0°C, aligning with the average human body temperature, indicating its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, this strain is typically found in the gastric mucosa of humans and other animals, where it may play a role in various physiological and pathological processes. The microaerophilic requirement underscores its niche adaptation, as it is likely to inhabit areas where oxygen levels are lower than atmospheric conditions, such as the gastric environment. ↵↵The specific ecological role of Helicobacter pylori strain 22367 within its host remains to be fully elucidated; however, its adaptation to the host-associated niche suggests it may have evolved mechanisms to survive and thrive in the complex microenvironments of the gastrointestinal tract. This ability to persist in such a specialized habitat could offer insights into the evolutionary pressures faced by gut-associated microbes and their interactions with the host immune system. Understanding these dynamics may pave the way for more targeted approaches to managing gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIM00000000.1 Bac0013803 Helicobacter pylori strain 22346 "Helicobacter pylori strain 22346 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives in a microaerophilic environment, indicating its requirement for reduced oxygen levels, which is typical for many Helicobacter species. The optimal growth temperature for strain 22346 is approximately 37.0 °C, aligning with its adaptation to host-associated habitats, where it is often found colonizing the gastric mucosa of humans and other mammals.↵↵The unique morphology of H. pylori, particularly its spiral shape, facilitates motility and colonization within the viscous environment of the stomach, contributing to its survival in acidic conditions. As a microaerophile, H. pylori thrives in environments where oxygen concentration is lower than that of the atmosphere, a feature that likely aids in its persistence within host niches.↵↵A noteworthy aspect of H. pylori strain 22346 is its strong association with host environments, which underscores its role in the complex interactions within the gastrointestinal microbiome. This strain may provide insights into the adaptation mechanisms employed by gastric pathogens in response to host-generated environmental pressures, furthering our understanding of microbial resilience in specialized niches." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIS00000000.1 Bac0013804 Helicobacter pylori strain 22341 "Helicobacter pylori strain 22341 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, typically found in the human gastric environment. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, a condition prevalent in the gastric niche where it can colonize and persist.↵↵H. pylori strain 22341, like other strains of the species, is notable for its unique adaptations that allow it to survive in the acidic conditions of the stomach, where it can play a role in influencing gastric health. The ability to maintain a stable presence in such a hostile environment suggests that this strain possesses specific biochemical pathways and structural features that facilitate its survival and metabolic processes under microaerophilic conditions.↵↵Understanding the characteristics of H. pylori strain 22341 can provide insights into the broader ecological dynamics of gastric microbiota, particularly in how varying strains adapt to specific host environments. This adaptability may contribute to the diverse interactions between H. pylori and its host, highlighting the intricate balance between microbial life and human health within the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBIU00000000.1 Bac0013805 Helicobacter pylori strain 2040 "Helicobacter pylori strain 2040 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives at an optimal temperature of 37.0°C, reflecting its adaptation to host-associated environments, particularly within the gastric mucosa of mammals. The microaerophilic nature of H. pylori strain 2040 indicates its requirement for low levels of oxygen, which is consistent with the oxygen-poor environment of the stomach where it is typically found.↵↵H. pylori is known for its ability to colonize the gastric lining, where it may play a role in various gastric conditions. The unique spiral morphology of this strain may enhance its motility, allowing it to navigate the viscous gastric mucus layer. Additionally, its adaptation to a microaerophilic habitat suggests a specialized metabolic capability that enables survival in the challenging conditions of the stomach.↵↵Understanding the specific traits of H. pylori strain 2040 provides insight into its ecological niche within the gastrointestinal tract, where it may interact with host immune responses and other microbial populations. The strain's optimal growth temperature and oxygen requirements highlight its evolutionary adaptations to a highly specialized environment, emphasizing the intricate relationships between host-associated bacteria and their ecological contexts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJC00000000.1 Bac0013806 Helicobacter pylori strain 2020 "Helicobacter pylori strain 2020 is a Gram-negative bacterium characterized by its spiral shape and arrangement in single cells. This microbe exhibits an optimal growth temperature of 37.0°C, which aligns with its adaptation to host-associated environments, commonly found in the gastric mucosa of humans and other mammals. H. pylori strain 2020 is classified as microaerophilic, indicating that it thrives in environments with lower levels of oxygen compared to atmospheric conditions.↵↵The unique morphology of H. pylori, with its helical structure, is believed to facilitate its motility through viscous gastric mucus, potentially enhancing its ability to colonize the stomach lining. This strain, like other members of its species, may play a role in the complex interactions within the gastrointestinal microbiome, influencing both host health and disease states. Given its specific environmental requirements and host association, H. pylori strain 2020 may contribute to the dynamic microbial landscape of the stomach, highlighting the intricate balance between microbial inhabitants and their host, which can be crucial for understanding gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJG00000000.1 Bac0013807 Helicobacter pylori strain 2025 "Helicobacter pylori strain 2025 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the typical internal body temperature of its host, underscoring its adaptation to a host-associated habitat. H. pylori strain 2025 exhibits microaerophilic properties, suggesting that it requires reduced oxygen levels for growth, a trait that is common among members of this genus, facilitating their survival in the gastric environment where oxygen concentration is lower than in the atmosphere.↵↵The unique morphology of H. pylori, combined with its specific temperature and oxygen requirements, allows it to colonize the gastric mucosa effectively. The adaptation to a microaerophilic lifestyle is particularly significant as it enables the bacterium to evade the more oxygen-rich environments of the gastric lumen while still accessing nutrients and other resources abundant in the host's stomach. This ecological niche not only highlights the bacterium's evolutionary strategies but also emphasizes its role in the complex microbial ecosystem within the human gastrointestinal tract. Understanding these traits provides insights into the survival mechanisms of H. pylori and its interactions with the host environment, which may influence its ecological dynamics and potential roles in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJI00000000.1 Bac0013808 Helicobacter pylori strain 2007 "Helicobacter pylori strain 2007 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is adapted to a microaerophilic environment, thriving optimally at a temperature of 37.0°C, which aligns with the typical conditions found in the human gastric epithelium where it resides. As a host-associated organism, H. pylori strain 2007 is likely to play a role in the complex dynamics of the gastrointestinal microbiome, potentially influencing local pH levels and interactions with the host immune system.↵↵The microaerophilic nature of H. pylori suggests that it requires lower levels of oxygen than are present in the atmosphere, which may be a crucial factor in its survival and colonization within the highly acidic environment of the stomach. This adaptation not only highlights the bacterium's evolutionary specialization but also emphasizes the importance of oxygen gradients in host-associated habitats. Understanding the specific metabolic pathways and interactions of H. pylori strain 2007 in its ecological niche could provide insights into its role in gastric health and disease, establishing a foundation for future research into its biological significance within the human microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJM00000000.1 Bac0013809 Helicobacter pylori strain 2010 "Helicobacter pylori strain 2010 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This strain thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism. H. pylori is known to colonize the gastric epithelium of the human stomach, where it can adapt to the acidic environment, although specific interactions and adaptations of strain 2010 have not been detailed in the provided traits.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for its survival and growth, which is typical for many gastric microbes. This metabolic requirement allows it to occupy a niche within the stomach where oxygen levels are lower than atmospheric concentrations, thereby influencing its ecological interactions in the gastric microbiome. ↵↵The unique combination of its Gram-negative cell wall structure, spiral morphology, and microaerophilic lifestyle suggests that Helicobacter pylori strain 2010 may play a specific role in the gastric microbiota, potentially affecting local pH levels and influencing the overall microbial community dynamics within the host. Further studies could elucidate its ecological contributions and interactions within the complex environment of the stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJN00000000.1 Bac0013810 Helicobacter pylori strain A033 "Helicobacter pylori strain A033 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives at an optimal temperature of 37.0°C, which aligns with the typical physiological conditions of its host environment. H. pylori strain A033 is classified as microaerophilic, indicating that it requires reduced levels of oxygen for its growth and metabolism, a trait that is essential for its survival in the gastric environment of mammals.↵↵As a host-associated organism, H. pylori strain A033 is primarily found within the stomachs of its hosts, where it interacts with the gastric mucosa. This habitat is notable for its acidic conditions, which H. pylori has adapted to survive through various mechanisms, including the production of urease that neutralizes stomach acid. The ecological niche of H. pylori strain A033 may provide insights into the complex interactions between microbial communities in the gastrointestinal tract and their host, particularly in relation to nutrient acquisition and competition within the highly specialized environment of the stomach. Understanding the characteristics of H. pylori strain A033 can contribute to broader knowledge about microbial adaptation to extreme environments and the dynamics of host-microbe interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJQ00000000.1 Bac0013811 Helicobacter pylori strain 22389 "Helicobacter pylori strain 22389 is a microaerophilic, Gram-negative bacterium characterized by its unique spirilla shape and single-cell arrangement. This organism thrives optimally at 37.0 °C, which aligns with its association with host environments, particularly the human gastric mucosa. The microaerophilic nature of H. pylori strain 22389 indicates that it requires lower levels of oxygen for survival compared to atmospheric levels, which is consistent with its ecological niche within the stomach, where oxygen concentration is limited.↵↵This strain is part of a broader group of Helicobacter species known for their ability to colonize the gastric epithelium. The host-associated habitat of H. pylori strain 22389 suggests a specialized adaptation to the acidic conditions of the stomach, where it plays a role in the complex microbial community of the gastrointestinal tract. Understanding the specific traits of this strain can provide insights into its physiological capabilities and interactions within the host environment, highlighting the importance of such bacteria in human health and disease. The adaptation of H. pylori strain 22389 to microaerophilic conditions may also influence its metabolic pathways, potentially impacting its ecological role in the gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBJX00000000.1 Bac0013812 Helicobacter pylori strain 22278 "Helicobacter pylori strain 22278 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain optimally thrives at a temperature of 37.0°C, which coincides with the physiological temperature of its human gastric niche. As a host-associated microbe, H. pylori strain 22278 colonizes the gastric epithelium, where it can influence local microbial ecosystems and host health.↵↵The microaerophilic nature of this strain suggests that it requires reduced oxygen levels for optimal growth, a condition typically found in the gastric environment, which is less conducive to the survival of many other microbial species. The unique morphology of H. pylori, combined with its specific oxygen requirements and temperature preferences, allows it to establish itself effectively in the human stomach, where it may interact with both the host's immune system and other microbial inhabitants of the gastric microbiome.↵↵Understanding the environmental adaptations of H. pylori strain 22278 can provide insights into its survival strategies in a challenging habitat, as well as its potential roles in gastric health and disease. The strain's ability to thrive in a microaerophilic environment reflects its evolutionary niche, highlighting the intricate relationship between host-associated microbes and their environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBKA00000000.1 Bac0013813 Helicobacter pylori strain 22046 "Helicobacter pylori strain 22046 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain is optimally adapted to a temperature of 37.0°C, aligning with the typical internal temperature of its host organisms, which suggests a specialized niche within the gastric environment. Strain 22046 is host-associated, indicating that it primarily resides within the gastric mucosa of its hosts, where it may engage in complex interactions with host tissues.↵↵The microaerophilic nature of H. pylori strain 22046 implies its growth is favored in environments with reduced oxygen levels, as typically found in the stomach, where oxygen concentration is significantly lower than in the atmosphere. This adaptation is crucial for its survival and metabolic processes in the acidic gastric environment, where it may contribute to a unique microecosystem.↵↵The ecological role of H. pylori strain 22046 extends beyond mere colonization; it may influence gastric physiology and the microbiome composition of its host. Its presence can evoke various host responses, potentially impacting local immune responses and influencing the overall microbial community in the stomach. This interplay highlights the intricate relationships between H. pylori and its host, suggesting that strain 22046 could serve as a model for understanding host-microbe interactions in the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBKB00000000.1 Bac0013814 Helicobacter pylori strain 2029 "Helicobacter pylori strain 2029 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape (spirilla) and typically occurs as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of its host organisms. H. pylori is known to inhabit the gastric mucosa of humans and other mammals, indicating its host-associated lifestyle.↵↵The microaerophilic nature of H. pylori strain 2029 allows it to survive and proliferate in environments with reduced oxygen levels, such as the gastric environment, where it plays a role in the complex microbial community of the stomach. The spiral morphology of this bacterium is thought to facilitate motility through the viscous gastric mucus, aiding in colonization and adaptation to its niche.↵↵Due to its unique adaptation to the acidic and low-oxygen conditions of the stomach, Helicobacter pylori strain 2029 may serve as a model organism for studying microbial interactions within host environments. Understanding its physiological traits could provide insights into how similar bacteria adapt to extreme conditions and contribute to host-microbe dynamics, potentially influencing gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MBKG00000000.1 Bac0013815 Parafrankia colletiae strain Cc1.17 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Parafrankia Parafrankia colletiae 573497 MBLM00000000.1 Bac0013816 Pseudofrankia sp. BMG5.36 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Pseudofrankia Pseudofrankia sp. BMG5.36 2994363 MBLO00000000.1 Bac0013817 Limosilactobacillus reuteri strain 484_32 "Limosilactobacillus reuteri strain 484_32 is a Gram-positive, rod-shaped bacterium that arranges itself in chains, exhibiting facultative anaerobic growth. This strain is part of a diverse microbial community, with a habitat that spans multiple environments, suggesting its adaptability and potential resilience in varying conditions.↵↵The facultative anaerobic nature of L. reuteri strain 484_32 allows it to thrive in both aerobic and anaerobic environments, which may be advantageous for its survival in complex ecosystems, such as the gastrointestinal tract of various hosts. Its ability to form chains could facilitate its interactions within microbial communities, potentially influencing nutrient cycling and microbial dynamics.↵↵Moreover, the presence of L. reuteri in multiple habitats indicates its ecological versatility and may hint at its role in maintaining microbial balance. Given its characteristics, this strain could be significant in probiotic applications or fermentation processes, contributing to the health of its host or the quality of fermented products. The unique combination of traits observed in Limosilactobacillus reuteri strain 484_32 underscores its potential importance in both ecological and biotechnological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 MBLT00000000.1 Bac0013818 Pseudoalteromonas tetraodonis strain CSB01KR Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas tetraodonis 43659 MBMS00000000.1 Bac0013819 Vibrio parahaemolyticus strain 04-2548_100 "Vibrio parahaemolyticus strain 04-2548_100 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is categorized as a facultative anaerobe. This strain does not undergo sporulation and is known to be a heterotroph, deriving its energy from organic compounds. It thrives in aquatic habitats, indicative of its ecological niche, where it likely plays a role in nutrient cycling and the decomposition of organic matter. ↵↵The optimal growth temperature for strain 04-2548_100 is around 20.0°C, suggesting a preference for temperate aquatic environments. This characteristic aligns with the general ecological adaptations of many Vibrio species, which are commonly found in coastal and estuarine waters, particularly in regions where organic material is abundant. ↵↵Given its traits, this strain may contribute to the microbial diversity within its habitat and participate in the dynamics of aquatic ecosystems, potentially influencing both microbial community structure and biogeochemical processes. Further studies could elucidate its specific interactions within the microbiome of aquatic systems, highlighting its ecological significance in nutrient cycling and organic matter degradation." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 MBOX00000000.1 Bac0013820 Tessaracoccus lapidicaptus strain IPBSL-7 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus lapidicaptus 1427523 MBQD00000000.1 Bac0013821 Cytobacillus oceanisediminis strain Bhandara28 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus oceanisediminis 665099 MBRJ00000000.1 Bac0013822 Mucilaginibacter pedocola strain TBZ30 "Mucilaginibacter pedocola strain TBZ30 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. As a member of the Mucilaginibacter genus, it is likely to be involved in the microbial dynamics of soil ecosystems, although specific ecological roles require further investigation.↵↵The Gram-negative classification indicates that M. pedocola strain TBZ30 possesses a complex cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in nutrient uptake and resistance to environmental stresses. The rod shape of this bacterium could facilitate its motility and colonization in soil matrices, potentially enhancing its interactions with soil organic matter and other microbial communities.↵↵Given its aerobic nature, M. pedocola strain TBZ30 may play a significant role in the decomposition of organic material in oxygen-rich environments, contributing to nutrient cycling and soil health. Understanding the specific ecological functions of this strain could provide insights into its potential applications in bioremediation or sustainable agriculture, where enhancing soil microbial diversity and activity is of paramount importance." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter pedocola Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 1792845 MBTF00000000.1 Bac0013823 Salinicola sp. MIT1003 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Salinicola Salinicola sp. MIT1003 1882734 MCAP00000000.1 Bac0013824 Sphingobacterium siyangense strain T12B17 "Sphingobacterium siyangense strain T12B17 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 32.0°C. This strain is characterized by its inability to form spores, which may influence its survival strategies in various environments. The rod shape and Gram-negative classification suggest a complex cell wall structure, typically composed of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵As an aerobic organism, Sphingobacterium siyangense strain T12B17 relies on oxygen for its metabolic processes, which may indicate its adaptation to environments rich in oxygen. The optimal growth temperature of 32.0°C suggests a preference for mesophilic habitats, potentially aligning with temperate regions where such conditions are prevalent.↵↵The unique traits of Sphingobacterium siyangense strain T12B17 may provide insights into the ecological roles of Sphingobacterium species in their native environments. Their aerobic metabolism and non-spore-forming nature may contribute to nutrient cycling and organic matter decomposition in soil or aquatic ecosystems. Understanding the physiological traits of this strain could further elucidate its potential applications in bioremediation or as a model organism in microbial ecology studies, particularly in the context of its environmental adaptations." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium siyangense Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 459529 MCAQ00000000.1 Bac0013825 Agrobacterium deltaense strain T3F4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium deltae 1183412 MCAR00000000.1 Bac0013826 Photobacterium damselae subsp. piscicida strain L091106-03H Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae mesophilic 38293 MCFX00000000.2 Bac0013827 Streptomyces sp. 2R Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2R 1883452 MCGP00000000.1 Bac0013828 Lacrimispora algidixylanolytica strain SPL73 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Lacrimispora algidixylanolytica 94868 MCIA00000000.1 Bac0013829 Thermohalobacter berrensis strain CTT3 Bacillati Bacillota Tissierellia Tissierellales Thermohalobacteraceae Thermohalobacter Thermohalobacter berrensis anaerobic 99594 MCIB00000000.1 Bac0013830 Hydrogenophaga sp. H7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. H7 1882399 MCIC00000000.1 Bac0013831 Pseudonocardia sp. Ae706_Ps2 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. Ae706_Ps2 1885035 MCIQ00000000.1 Bac0013832 Lactobacillus crispatus strain C25 C25-b_Repeat_154 "Lactobacillus crispatus strain C25 C25-b_Repeat_154 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is nonsporulating and demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth of L. crispatus C25 occurs at a temperature of 37.0°C, which aligns with its habitat in host-associated environments, where it likely plays a role in maintaining microbial balance.↵↵Lactobacillus species, including L. crispatus, are known for their importance in various ecosystems, particularly in the human microbiome, where they contribute to the maintenance of gut and vaginal health. The ability of L. crispatus C25 to grow in the presence of oxygen, albeit facultatively, suggests a versatile metabolic capacity that may enhance its survival in dynamic host environments. This adaptability could be crucial for the strain's role in competing with pathogens and supporting host health through the production of lactic acid and other beneficial metabolites.↵↵Overall, L. crispatus C25 not only exemplifies the physiological traits common to the Lactobacillus genus but also highlights the potential for host-associated lactobacilli to contribute to microbial homeostasis and overall health in their respective niches." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 MCJG00000000.1 Bac0013833 Escherichia coli strain HE-MDREc68 "Escherichia coli strain HE-MDREc68 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of many warm-blooded hosts. As a facultative anaerobe, HE-MDREc68 can grow in both the presence and absence of oxygen, allowing it to adapt to various environments within its host-associated habitat.↵↵The ability of E. coli strain HE-MDREc68 to survive in diverse oxygen conditions is indicative of its metabolic versatility, which is a characteristic feature of the Escherichia genus. This adaptability may facilitate its persistence in different niches within the gastrointestinal tract of mammals, where resource availability fluctuates. Furthermore, its rod shape and cellular arrangement can influence its motility and colonization ability, potentially impacting its interactions with host tissues and the gut microbiome.↵↵Understanding the physiological traits of E. coli strain HE-MDREc68 can provide insights into its ecological role within host-associated environments. The strain’s growth characteristics suggest that it may play a significant part in nutrient cycling and microbial community dynamics in the gastrointestinal tract, highlighting its importance in maintaining host health and microbiota balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MCLR00000000.1 Bac0013834 Lactiplantibacillus plantarum strain JSA22 "Lactiplantibacillus plantarum strain JSA22 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and exhibits facultative anaerobic growth, enabling it to adapt to varying oxygen levels in its environment. L. plantarum is known to inhabit diverse habitats, suggesting a versatile ecological role that may involve fermentation processes in various substrates.↵↵As a member of the Lactobacillus genus, L. plantarum strains, including JSA22, are commonly associated with food fermentation and are recognized for their ability to produce lactic acid. This metabolic capability not only contributes to food preservation but also may influence the microbial community dynamics in their habitats. The facultative anaerobic nature of strain JSA22 allows it to thrive in both aerobic and anaerobic conditions, thereby enhancing its adaptability to different ecological niches.↵↵Given its broad habitat range and metabolic flexibility, Lactiplantibacillus plantarum strain JSA22 may play a significant role in the fermentation of plant-based materials, potentially contributing to the development of novel probiotic products and improving food safety through natural preservation methods. Further studies could elucidate the specific interactions of this strain within microbial communities and its potential applications in biotechnology and food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 MCOL00000000.1 Bac0013835 Methylobrevis pamukkalensis strain PK2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Pleomorphomonadaceae Methylobrevis Methylobrevis pamukkalensis aerobic 1439726 MCRJ00000000.1 Bac0013836 Vibrio sp. 10N.286.55.C11 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.286.55.C11 1884478 MCSK00000000.1 Bac0013837 Vibrio lentus strain 10N.261.55.C8 10N26155C8_3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus 136468 MCWV00000000.2 Bac0013838 Vibrio sp. 10N.261.54.C3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.261.54.C3 1884474 MCXG00000000.1 Bac0013839 Vibrio breoganii strain 10N.261.52.B1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio breoganii 553239 MCYB00000000.1 Bac0013840 Vibrio lentus strain 10N.261.46.F8 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus 136468 MCZK00000000.1 Bac0013841 Vibrio splendidus strain 10N.261.45.E8 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 MCZX00000000.1 Bac0013842 Enterovibrio norvegicus strain 10N.261.45.A10 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Enterovibrio Enterovibrio norvegicus 188144 MDAL00000000.1 Bac0013843 Dietzia alimentaria strain BP 27/1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia alimentaria 665550 MDCG00000000.1 Bac0013844 Moorella thermoacetica strain DSM 6867 Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella thermoacetica thermophilic 1525 MDDB00000000.1 Bac0013845 Moorella thermoacetica strain DSM 21394 Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella thermoacetica thermophilic 1525 MDDC00000000.1 Bac0013846 Shigella sp. FC2928 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sp. FC2928 1886517 MDDJ00000000.1 Bac0013847 Sphingomonas turrisvirgatae strain MCT13 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas turrisvirgatae 1888892 MDDS00000000.1 Bac0013848 Mesorhizobium sp. LCM 4576 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. LCM 4576 1848289 MDDT00000000.1 Bac0013849 Xanthomonas arboricola pv. corylina strain CFBP1159 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 56448 MDEA00000000.1 Bac0013850 Xanthomonas dyei strain CFBP7245 Xd-CFBP7245-G1152 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas dyei 743699 MDEE00000000.1 Bac0013851 Xanthomonas hyacinthi strain CFBP1156 Xhy-CFBP1156-G1104 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hyacinthi 56455 MDEG00000000.1 Bac0013852 Xanthomonas vasicola strain CFBP2543 Xvaho-CFBP2543-G1135 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vasicola 56459 MDEL00000000.1 Bac0013853 Pseudomonas graminis strain UASWS1507 9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas graminis 158627 MDEN00000000.1 Bac0013854 Burkholderia catarinensis strain 89 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia catarinensis 1108140 MDEQ00000000.2 Bac0013855 Pseudaminobacter manganicus strain JH-7 "Pseudaminobacter manganicus strain JH-7 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This strain exhibits the characteristic features of the Pseudaminobacter genus, which is known for its metabolic versatility. The rod shape and aerobic nature suggest that P. manganicus strain JH-7 likely plays a role in nutrient cycling within its environment, potentially contributing to the degradation of organic matter or the biogeochemical cycling of manganese, given its species designation. ↵↵The optimal temperature of 29.0°C indicates that this strain may be well-adapted to slightly warm environments, which could include soil or freshwater ecosystems where temperature fluctuations are common. Understanding the physiological traits of P. manganicus strain JH-7 may provide insights into how this microbe interacts with its surroundings, particularly in relation to manganese metabolism and its potential applications in bioremediation processes. Further studies could explore its metabolic pathways to clarify its ecological roles and potential interactions within microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Manganibacter Manganibacter manganicus Gram-negative rod non-motile aerobic 29 mesophilic 1873176 MDET00000000.1 Bac0013856 Mesorhizobium sp. ORS 3428 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. ORS 3428 540997 MDFL00000000.1 Bac0013857 Maribacter sp. 4U21 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter sp. 4U21 1889779 MDGN00000000.1 Bac0013858 Gaetbulibacter sp. 5U11 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Gaetbulibacter Gaetbulibacter sp. 5U11 1889780 MDGO00000000.1 Bac0013859 Reichenbachiella sp. 5M10 Pseudomonadati Bacteroidota Cytophagia Cytophagales Reichenbachiellaceae Reichenbachiella Reichenbachiella sp. 5M10 1889772 MDGR00000000.1 Bac0013860 Idiomarina sp. MD25a Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina sp. MD25a 1889913 MDGT00000000.1 Bac0013861 Thioclava sp. SK-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava sp. SK-1 1889770 MDHA00000000.1 Bac0013862 Acinetobacter pittii strain UKK-0520 "Acinetobacter pittii strain UKK-0520 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits an optimal growth temperature of 37.0°C, suggesting a preference for physiological conditions similar to those found in warm-blooded hosts. As a chemoheterotroph, A. pittii strain UKK-0520 requires organic compounds for energy and carbon, reflecting its adaptability to a variety of environments. ↵↵The strain is obligately aerobic, necessitating oxygen for its metabolic processes, which aligns with its capability to thrive in diverse habitats. The versatility of A. pittii in utilizing various organic substrates indicates its potential role in nutrient cycling within its ecological niche. Given its habitat diversity and metabolic requirements, A. pittii strain UKK-0520 may contribute to microbial communities in both natural and anthropogenic environments, possibly influencing the dynamics of microbial interactions and ecosystem functions.↵↵This bacterium exemplifies the ecological adaptability of Acinetobacter species, which are frequently found in soil, water, and clinical settings, highlighting the importance of understanding their biochemical capacities in relation to their environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 MDHY00000000.1 Bac0013863 Clavibacter michiganensis strain CFBP8019 "Clavibacter michiganensis strain CFBP8019 is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. The versatility of its habitat suggests that CFBP8019 can be found in a variety of environments, although specific ecological niches are not detailed in the current data.↵↵The morphology and oxygen requirements of Clavibacter michiganensis strain CFBP8019 highlight its adaptability to different aerobic conditions. Its rod shape may contribute to its motility and ability to colonize diverse substrates. Understanding the specific ecological roles of CFBP8019 within its habitats may provide insights into its interactions with other microorganisms, as well as its potential contributions to nutrient cycling or plant health in its natural environments. Further studies are warranted to elucidate the functional implications of its traits in various ecological contexts." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 28447 MDJZ00000000.1 Bac0013864 Gottfriedia luciferensis strain CH01 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gottfriedia Gottfriedia luciferensis 178774 MDKC00000000.1 Bac0013865 Oceanisphaera psychrotolerans strain LAM-WHM-ZC Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Oceanisphaera Oceanisphaera psychrotolerans 1414654 MDKE00000000.1 Bac0013866 PVC group bacterium (ex Bugula neritina AB1) Pseudomonadati PVC group bacterium (ex Bugula neritina AB1) 1868283 MDLB00000000.1 Bac0013867 Rhodobacteraceae bacterium (ex Bugula neritina AB1) Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium (ex Bugula neritina AB1) 1868286 MDLF00000000.1 Bac0013868 Terasakiispira papahanaumokuakeensis strain PH27A Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Terasakiispira Terasakiispira papahanaumokuakeensis 197479 MDTQ00000000.1 Bac0013869 Snodgrassella alvi strain App2-2 1196083.48_jtg1067f_1068f Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella alvi 1196083 MDVB00000000.1 Bac0013870 Hymenobacter coccineus strain CCM 8649 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter coccineus 1908235 MDZA00000000.1 Bac0013871 Shigella sp. FC569 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sp. FC569 1892897 MECV00000000.1 Bac0013872 Lactiplantibacillus paraplantarum strain Lp109 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus paraplantarum 60520 MECY00000000.1 Bac0013873 Comamonas sp. SCN 65-56 ABS45_C0051 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. SCN 65-56 1660095 MEDS00000000.1 Bac0013874 Gemmatimonadetes bacterium SCN 70-22 ABS52_C0084 Pseudomonadati Gemmatimonadota Gemmatimonadetes bacterium SCN 70-22 1660163 MEDZ00000000.1 Bac0013875 Lautropia sp. SCN 69-89 ABS56_C0070 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Lautropia Lautropia sp. SCN 69-89 1660104 MEED00000000.1 Bac0013876 Microbacterium sp. SCN 70-200 ABS62_C0033 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. SCN 70-200 1660113 MEEJ00000000.1 Bac0013877 Sphingomonas sp. SCN 67-18 ABS87_C0079 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. SCN 67-18 1660141 MEFG00000000.1 Bac0013878 Lysobacteraceae bacterium SCN 69-123 ABS96_C0081 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium SCN 69-123 1660170 MEFO00000000.1 Bac0013879 Lysobacteraceae bacterium SCN 69-320 ABS97_C0030 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium SCN 69-320 1660169 MEFP00000000.1 Bac0013880 Comamonadaceae bacterium SCN 68-20 ABT02_C0108 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium SCN 68-20 1660161 MEFU00000000.1 Bac0013881 Comamonas sp. SCN 67-35 ABT03_C0038 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. SCN 67-35 1660096 MEFV00000000.1 Bac0013882 Leifsonia sp. SCN 70-46 ABT06_C0002 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. SCN 70-46 1660107 MEFY00000000.1 Bac0013883 Novosphingobium sp. SCN 63-17 ABT10_C0095 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. SCN 63-17 1660120 MEGC00000000.1 Bac0013884 Thiobacillus sp. SCN 64-317 THIO_HI_75 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus sp. SCN 64-317 1660143 MEGO00000000.1 Bac0013885 Thiobacillus sp. SCN 63-57 ABT23_C0059 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus sp. SCN 63-57 1660145 MEGP00000000.1 Bac0013886 Thiomonas sp. SCN 64-16 ABT24_C0093 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Thiomonas Thiomonas sp. SCN 64-16 1660151 MEGQ00000000.1 Bac0013887 Candidatus Heimdallarchaeota archaeon AB_125 Promethearchaeati Candidatus Heimdallarchaeota Candidatus Heimdallarchaeota archaeon AB_125 1841596 MEHH00000000.1 Bac0013888 Couchioplanes caeruleus subsp. caeruleus strain DSM 43634 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Couchioplanes Couchioplanes caeruleus 56438 MEIA00000000.1 Bac0013889 Campylobacter jejuni strain BCW_3784 "Campylobacter jejuni strain BCW_3784 is a Gram-negative, spiral-shaped bacterium that typically exists as single cells or in chains. This strain exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels. As a heterotroph, C. jejuni strain BCW_3784 obtains its energy from organic compounds, indicating its adaptability to diverse habitats.↵↵The optimal temperature for the growth of this strain is notably at 0.0°C, which may suggest that it possesses unique metabolic adaptations allowing it to survive in cold environments. This characteristic could enable C. jejuni strain BCW_3784 to inhabit niche ecological settings that are less favorable for other mesophilic bacteria, potentially influencing microbial community dynamics in those habitats.↵↵Understanding the specific environmental tolerances and energy acquisition mechanisms of C. jejuni strain BCW_3784 can provide valuable insights into its role in various ecosystems, particularly in colder climates where it may compete with other microorganisms for resources. Further exploration of its ecological interactions and adaptations could enhance our comprehension of its behavior in microbial communities and its potential impact on nutrient cycling in cold environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 MEIC00000000.1 Bac0013890 Snodgrassella alvi strain wkB273 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella alvi 1196083 MEIL00000000.1 Bac0013891 Snodgrassella alvi strain Ruf1-X Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella alvi 1196083 MEIP00000000.1 Bac0013892 Acidobacteria bacterium RBG_13_68_16 Pseudomonadati Acidobacteriota Acidobacteria bacterium RBG_13_68_16 1797171 MEKI00000000.1 Bac0013893 Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 Pseudomonadati Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 1797181 MEKS00000000.1 Bac0013894 Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 Pseudomonadati Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 1797186 MEKX00000000.1 Bac0013895 Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_46_13 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_46_13 1797220 MEMI00000000.1 Bac0013896 Bacteroidetes bacterium GWA2_32_17 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWA2_32_17 1797316 MENF00000000.1 Bac0013897 Bacteroidetes bacterium GWC2_33_15 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWC2_33_15 1797324 MENN00000000.1 Bac0013898 Bacteroidetes bacterium GWD2_45_23 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWD2_45_23 1797330 MENT00000000.1 Bac0013899 Bacteroidetes bacterium GWE2_42_42 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWE2_42_42 1797339 MEOC00000000.1 Bac0013900 Bacteroidetes bacterium GWF2_33_38 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWF2_33_38 1797342 MEOF00000000.1 Bac0013901 Bacteroidetes bacterium GWF2_40_13 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWF2_40_13 1797346 MEOJ00000000.1 Bac0013902 Bacteroidetes bacterium GWF2_43_11 Pseudomonadati Bacteroidota Bacteroidetes bacterium GWF2_43_11 1797352 MEOP00000000.1 Bac0013903 Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_37_12 Pseudomonadati Bacteroidota Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_37_12 1797365 MEPC00000000.1 Bac0013904 Bacteroidetes bacterium RIFOXYA12_FULL_38_20 Pseudomonadati Bacteroidota Bacteroidetes bacterium RIFOXYA12_FULL_38_20 1797368 MEPF00000000.1 Bac0013905 Bdellovibrionales bacterium GWB1_55_8 Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Bdellovibrionales bacterium GWB1_55_8 1797386 MEPR00000000.1 Bac0013906 Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 1797482 MEQT00000000.1 Bac0013907 Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 1797486 MEQX00000000.1 Bac0013908 Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_20 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_20 1797488 MEQZ00000000.1 Bac0013909 Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 1797497 MERI00000000.1 Bac0013910 Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13 1797498 MERJ00000000.1 Bac0013911 Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 1797505 MERQ00000000.1 Bac0013912 Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 1797566 MESI00000000.1 Bac0013913 Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 1797568 MESK00000000.1 Bac0013914 Burkholderiales bacterium RIFOXYC12_FULL_65_23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFOXYC12_FULL_65_23 1797572 MESO00000000.1 Bac0013915 Burkholderiales bacterium RIFOXYD12_FULL_59_19 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium RIFOXYD12_FULL_59_19 1797574 MESQ00000000.1 Bac0013916 candidate division WOR-1 bacterium RIFOXYB2_FULL_37_13 Bacillati candidate division WOR-1 bacterium RIFOXYB2_FULL_37_13 1802579 MEUB00000000.1 Bac0013917 candidate division WOR-1 bacterium RIFOXYC2_FULL_41_25 Bacillati candidate division WOR-1 bacterium RIFOXYC2_FULL_41_25 1802586 MEUI00000000.1 Bac0013918 Candidatus Aminicenantes bacterium RBG_19FT_COMBO_65_30 Candidatus Aminicenantota Candidatus Aminicenantes bacterium RBG_19FT_COMBO_65_30 1797277 MEYF00000000.1 Bac0013919 Candidatus Margulisbacteria bacterium GWE2_39_32 Bacillati Candidatus Margulisiibacteriota Candidatus Margulisbacteria bacterium GWE2_39_32 1817872 MFRG00000000.1 Bac0013920 Candidatus Melainabacteria bacterium RIFOXYA2_FULL_32_9 Bacillati Candidatus Melainabacteria Candidatus Melainabacteria bacterium RIFOXYA2_FULL_32_9 1801611 MFRQ00000000.1 Bac0013921 Candidatus Micrarchaeota archaeon RBG_16_49_10 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon RBG_16_49_10 1801633 MFRS00000000.1 Bac0013922 Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26 Candidatus Rokuibacteriota Candidatus Rokubacteria bacterium RIFCSPHIGHO2_02_FULL_73_26 1802102 MGCA00000000.1 Bac0013923 Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 1797585 MGLK00000000.1 Bac0013924 Chloroflexi bacterium GWC2_73_18 Bacillati Chloroflexota Chloroflexi bacterium GWC2_73_18 1797616 MGMJ00000000.1 Bac0013925 Chloroflexi bacterium RBG_13_68_17 Bacillati Chloroflexota Chloroflexi bacterium RBG_13_68_17 1797638 MGNF00000000.1 Bac0013926 Curvibacter sp. GWA2_63_95 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Curvibacter Curvibacter sp. GWA2_63_95 1797746 MGPB00000000.1 Bac0013927 Deltaproteobacteria bacterium GWA2_65_63 Deltaproteobacteria Deltaproteobacteria bacterium GWA2_65_63 1797812 MGPO00000000.1 Bac0013928 Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9 Deltaproteobacteria Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9 1797899 MGSX00000000.1 Bac0013929 Elusimicrobia bacterium RIFOXYA12_FULL_49_49 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium RIFOXYA12_FULL_49_49 1797954 MGUZ00000000.1 Bac0013930 Elusimicrobia bacterium RIFOXYA2_FULL_39_19 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium RIFOXYA2_FULL_39_19 1797957 MGVC00000000.1 Bac0013931 Elusimicrobia bacterium RIFOXYD2_FULL_34_15 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium RIFOXYD2_FULL_34_15 1797973 MGVS00000000.1 Bac0013932 Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Fluviicola Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 1798019 MGWN00000000.1 Bac0013933 Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 1798290 MGYJ00000000.1 Bac0013934 Geobacteraceae bacterium GWC2_53_11 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacteraceae bacterium GWC2_53_11 1798316 MGZJ00000000.1 Bac0013935 Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 1798415 MGZO00000000.1 Bac0013936 Ignavibacteria bacterium GWF2_33_9 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium GWF2_33_9 1798430 MHAC00000000.1 Bac0013937 Ignavibacteria bacterium RIFCSPLOWO2_12_FULL_56_21 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium RIFCSPLOWO2_12_FULL_56_21 1798438 MHAK00000000.1 Bac0013938 Stygiobacter sp. RIFOXYB2_FULL_37_11 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae Stygiobacter Stygiobacter sp. RIFOXYB2_FULL_37_11 1798448 MHAU00000000.1 Bac0013939 Lentisphaerae bacterium RIFOXYB12_FULL_65_16 Pseudomonadati Lentisphaerota Lentisphaerae bacterium RIFOXYB12_FULL_65_16 1798581 MHBP00000000.1 Bac0013940 Lentisphaerae bacterium RIFOXYC12_FULL_60_16 Pseudomonadati Lentisphaerota Lentisphaerae bacterium RIFOXYC12_FULL_60_16 1798582 MHBQ00000000.1 Bac0013941 Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylotenera Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 1801615 MHBU00000000.1 Bac0013942 Nitrospirae bacterium GWB2_47_37 Pseudomonadati Nitrospirota Nitrospirae bacterium GWB2_47_37 1801692 MHDU00000000.1 Bac0013943 Nitrospirae bacterium GWC2_57_13 Pseudomonadati Nitrospirota Nitrospirae bacterium GWC2_57_13 1801697 MHDZ00000000.1 Bac0013944 Nitrospirae bacterium GWF2_44_13 Pseudomonadati Nitrospirota Nitrospirae bacterium GWF2_44_13 1801702 MHEE00000000.1 Bac0013945 Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_51_18 Pseudomonadati Candidatus Omnitrophota Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_51_18 1801823 MHFI00000000.1 Bac0013946 Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_24 Pseudomonadati Candidatus Omnitrophota Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_24 1801828 MHFN00000000.1 Bac0013947 Omnitrophica bacterium RIFCSPLOWO2_02_FULL_45_16 Pseudomonadati Candidatus Omnitrophota Omnitrophica bacterium RIFCSPLOWO2_02_FULL_45_16 1801831 MHFQ00000000.1 Bac0013948 Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_45_21 Pseudomonadati Candidatus Omnitrophota Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_45_21 1801854 MHGN00000000.1 Bac0013949 Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_48_11 Pseudomonadati Candidatus Omnitrophota Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_48_11 1801856 MHGP00000000.1 Bac0013950 Omnitrophica WOR_2 bacterium RIFCSPLOWO2_02_FULL_63_16 Pseudomonadati Candidatus Omnitrophota Omnitrophica WOR_2 bacterium RIFCSPLOWO2_02_FULL_63_16 1801866 MHGZ00000000.1 Bac0013951 Omnitrophica WOR_2 bacterium RIFOXYA2_FULL_38_17 Pseudomonadati Candidatus Omnitrophota Omnitrophica WOR_2 bacterium RIFOXYA2_FULL_38_17 1801873 MHHG00000000.1 Bac0013952 Candidatus Buchananbacteria bacterium Candidatus Buchananiibacteriota Candidatus Buchananbacteria bacterium 2268182 MHIB00000000.1 Bac0013953 Candidatus Kerfeldbacteria bacterium RIFOXYB2_FULL_38_14 Candidatus Kerfeldiibacteriota Candidatus Kerfeldbacteria bacterium RIFOXYB2_FULL_38_14 1798547 MHKI00000000.1 Bac0013954 Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadales bacterium RIFCSPLOWO2_12_FULL_59_450 1802008 MHZP00000000.1 Bac0013955 Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 1802171 MIAL00000000.1 Bac0013956 Spirochaetes bacterium GWC1_61_12 Pseudomonadati Spirochaetota Spirochaetes bacterium GWC1_61_12 1802180 MIAU00000000.1 Bac0013957 Sulfurimonas sp. RIFOXYD2_FULL_34_21 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp. RIFOXYD2_FULL_34_21 1802261 MICH00000000.1 Bac0013958 Streptomyces fradiae ATCC 10745 = DSM 40063 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces fradiae 1319510 MIFZ00000000.1 Bac0013959 Pseudonocardia autotrophica strain DSM 535 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia autotrophica 2074 MIGB00000000.1 Bac0013960 Xanthomonas arboricola strain CFBP 7652 XarjCFBP765278 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 56448 MIGJ00000000.1 Bac0013961 Xanthomonas arboricola strain CFBP 7653 XarjCFBP765377 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 56448 MIGK00000000.1 Bac0013962 Xanthomonas arboricola pv. populi strain CFBP 3122 XaplCFBP312292 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 56448 MIGV00000000.1 Bac0013963 Xanthomonas arboricola strain CFBP 7645 XarjCFBP764514 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 56448 MIGY00000000.1 Bac0013964 Mycolicibacterium holsaticum strain M7 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium holsaticum 152142 MIGZ00000000.1 Bac0013965 Mycolicibacterium flavescens strain M6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium flavescens 1776 MIHA00000000.1 Bac0013966 Mycobacterium intermedium strain HMC2_M5 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intermedium 28445 MIHB00000000.1 Bac0013967 Moorella thermoacetica strain DSM 11768 Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella thermoacetica thermophilic 1525 MIHH00000000.1 Bac0013968 Aeromicrobium sp. PE09-221 136 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp. PE09-221 1898043 MIJB00000000.1 Bac0013969 Desulfuribacillus alkaliarsenatis strain AHT28 Bacillati Bacillota Desulfuribacillia Desulfuribacillales Desulfuribacillaceae Desulfuribacillus Desulfuribacillus alkaliarsenatis anaerobic 766136 MIJE00000000.1 Bac0013970 Enterococcus ureasiticus strain DSM 23328 9 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus ureasiticus microaerophile 903984 MIJZ00000000.1 Bac0013971 Enterococcus quebecensis strain LMG 26306 9 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus quebecensis 903983 MIKB00000000.1 Bac0013972 Enterococcus ureilyticus strain LMG 26676 9 "Enterococcus ureilyticus strain LMG 26676 9 is a Gram-positive, ovoid-shaped bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in varying oxygen conditions. This strain does not form spores, indicating a reliance on vegetative growth for survival and propagation. The optimal temperature for growth is 25.0°C, suggesting that it may be well-suited to environmental niches that are moderately warm.↵↵Enterococcus species are commonly found in diverse habitats, including soil, water, and the gastrointestinal tracts of humans and animals, which hints at a potentially versatile ecological role for strain LMG 26676 9. Its ability to grow in both aerobic and anaerobic conditions may confer advantages in fluctuating environments, allowing it to adapt to different ecological contexts.↵↵Further studies on Enterococcus ureilyticus strain LMG 26676 9 could provide insights into its metabolic capabilities and ecological functions, particularly in relation to its nutrient utilization and interactions with other microbial communities. This adaptability may have implications for its role in nutrient cycling and its potential contributions to environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus ureilyticus Gram-positive ovoid non-motile facultative aerobe/anaerobe 25 mesophilic non-spore-forming 1131292 MIKC00000000.1 Bac0013973 Helicobacter pylori strain MM2003-103 "Helicobacter pylori strain MM2003-103 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0 °C, which is consistent with its adaptation to a host-associated habitat, typically found in the gastric mucosa of mammals. ↵↵As a member of the Helicobacter genus, strain MM2003-103 is expected to possess features that facilitate its survival in the acidic environment of the stomach, although the specific biochemical pathways and mechanisms remain to be elucidated. The microaerophilic nature of this strain suggests that it requires reduced levels of oxygen for growth, which aligns with its ecological niche within the host, where oxygen concentrations are lower than atmospheric levels. ↵↵The adaptation of Helicobacter pylori strain MM2003-103 to its microaerophilic environment may provide insights into its metabolic capabilities and interactions within the gastric microbiome. Understanding these traits could enhance our knowledge of how this strain interacts with host physiology and potentially influences gastric health or disease processes. Further research into its specific ecological role could elucidate the complexities of host-microbe interactions within the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MIKR00000000.1 Bac0013974 Helicobacter pylori strain MC2011-145 "Helicobacter pylori strain MC2011-145 is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and arrangement in singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found in the gastric environment of its host. H. pylori is primarily associated with the gastric epithelium, where it inhabits the mucosal layer, contributing to its classification as a host-associated microbe.↵↵The microaerophilic nature of H. pylori strain MC2011-145 indicates that it requires reduced oxygen levels for optimal growth, which is consistent with its ecological niche in the human stomach, where oxygen concentrations are lower than in the atmosphere. This adaptation may allow the strain to effectively colonize and persist in the gastric microenvironment, potentially influencing local microbial dynamics and host physiology.↵↵Understanding the specific growth conditions and ecological characteristics of H. pylori strain MC2011-145 can provide insights into its role in the gastric microbiome and its interactions with host immune responses. The strain's unique adaptations to a microaerophilic habitat highlight the intricate balance between host and microbiome, underscoring the importance of studying such bacteria within their ecological contexts to better understand their functions and potential implications for human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MIKT00000000.1 Bac0013975 Helicobacter pylori strain MG2003-98 "Helicobacter pylori strain MG2003-98 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and individual cell arrangement. This strain thrives optimally at 37.0°C, suggesting its adaptation to the warm environment of the host's gastrointestinal tract. Typically associated with human hosts, H. pylori plays a significant role in the microbial ecosystem of the stomach, where it can influence local pH and nutrient availability.↵↵The microaerophilic nature of H. pylori strain MG2003-98 indicates that it requires reduced oxygen levels for optimal growth, which aligns with its habitat within the gastric mucosa where oxygen concentration is lower than in the atmosphere. This adaptation may facilitate its survival in the acidic environment of the stomach, allowing it to colonize effectively and interact with the host's immune responses.↵↵The unique morphology of H. pylori, combined with its ecological niche, suggests that strain MG2003-98 may contribute to complex interactions within the gastric microbiome, potentially affecting gastric health and disease states. Understanding the traits of this strain could provide insights into the evolutionary adaptations of H. pylori and its role in host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILB00000000.1 Bac0013976 Helicobacter pylori strain MG2005-98 "Helicobacter pylori strain MG2005-98 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated organism, commonly found in the gastric environment of mammals. ↵↵As a member of the Helicobacter genus, MG2005-98 is adapted to survive in low-oxygen conditions, which is typical for organisms residing within the gastrointestinal tract. The microaerophilic nature of this strain suggests that it requires a reduced level of oxygen for optimal growth, a trait that may influence its survival and ecological interactions within the host.↵↵Given its specific adaptations, Helicobacter pylori strain MG2005-98 may play a role in the complex microbial community of the gastric microbiome. Its ability to thrive in the acidic environment of the stomach could provide insights into microbial resilience and interactions in host-associated environments, potentially influencing host health and disease dynamics. Further research is warranted to unravel its ecological significance and potential interactions with other microbial inhabitants in the gastric niche." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILD00000000.1 Bac0013977 Helicobacter pylori strain MG2011-41 "Helicobacter pylori strain MG2011-41 is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, aligning with the human body temperature, which suggests a close association with its host environment. H. pylori is primarily found in the gastric mucosa of humans, indicating its adaptation to a host-associated habitat.↵↵The microaerophilic nature of H. pylori strain MG2011-41 implies that it requires reduced levels of oxygen for growth, which is typically found in the gastric environment where the bacterium resides. This adaptation not only aids in its survival but also influences its metabolic processes and interactions within the host. ↵↵The unique morphological and physiological traits of H. pylori strain MG2011-41 enable it to colonize the gastric niche effectively, where it may play a role in the complex interplay of microbial communities in the human stomach. Understanding these traits provides valuable insights into the ecology of H. pylori and its potential influences on host health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILH00000000.1 Bac0013978 Helicobacter pylori strain MGms15 "Helicobacter pylori strain MGms15 is a Gram-negative microbe characterized by its spirilla shape and occurrence as single cells. This organism thrives in a microaerophilic environment, indicating its requirement for reduced oxygen levels, which is typical for many members of the Helicobacter genus. Optimal growth of strain MGms15 occurs at a temperature of 37.0°C, aligning with the physiological conditions found in the human gastrointestinal tract, where it is primarily host-associated.↵↵As a member of the Helicobacter genus, strain MGms15 is adapted to colonize specific niches within its host, potentially influencing local microbiota and host health. The microaerophilic nature of this strain suggests a specialized metabolic pathway that allows it to survive in environments with limited oxygen, such as the gastric mucosa. The ability to inhabit such a niche may play a role in its interactions with the host immune system and other microbial populations.↵↵Given its unique traits, Helicobacter pylori strain MGms15 exemplifies the intricate relationships that can develop between host-associated microbes and their environments, highlighting the adaptability of bacteria in colonizing specific ecological niches within the host. Further investigation into the specific interactions of this strain within the gastric environment could yield insights into its ecological role and potential implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILJ00000000.1 Bac0013979 Helicobacter pylori strain MGms2 "Helicobacter pylori strain MGms2 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives at an optimal temperature of 37.0°C, which aligns with the typical physiological conditions found in its host-associated habitat. ↵↵H. pylori is known for its adaptation to the gastric environment, and its microaerophilic nature suggests a requirement for reduced oxygen levels, which is compatible with the conditions present in the stomach. The ability to inhabit this niche is facilitated by its unique morphology and metabolic requirements, allowing it to survive and persist in a highly acidic environment.↵↵The solitary configuration of MGms2 may contribute to its individual survival strategies within the host, as it can navigate the complex dynamics of the gastric microenvironment more effectively than bacteria that form larger aggregates. Understanding the specific adaptations of this strain can provide insights into its ecological interactions and potential roles within the microbiome of the host, particularly regarding its relationship with gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILM00000000.1 Bac0013980 Helicobacter pylori strain MGms23 "Helicobacter pylori strain MGms23 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, indicating a preference for physiological temperatures commonly found in its host environment. As a microaerophilic organism, H. pylori strain MGms23 requires reduced oxygen levels for growth, which aligns with its adaptation to the gastric niche of its host.↵↵Typically associated with the gastric mucosa, H. pylori is known for its ability to colonize the human stomach, where it interacts closely with the host's immune system. The strain's microaerophilic nature suggests it is well-adapted to the low-oxygen conditions prevalent in the gastric environment, allowing it to survive and proliferate effectively in this niche. ↵↵The host-associated habitat of H. pylori strain MGms23 further emphasizes its specialized adaptations for survival in a complex ecosystem, where it may play a significant role in influencing the host's gastric physiology. Understanding the specific traits of this strain can provide insights into its ecological interactions and potential implications for host health and disease dynamics. This highlights the importance of strain-specific research in elucidating the broader ecological impact of H. pylori within its host environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILO00000000.1 Bac0013981 Helicobacter pylori strain MM2005-126 "Helicobacter pylori strain MM2005-126 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, indicative of its adaptation to the warm environment of its host. H. pylori strain MM2005-126 is classified as microaerophilic, meaning it requires reduced oxygen levels for growth, which aligns with its typical habitat in the gastric mucosa of mammals. ↵↵The host-associated lifestyle of H. pylori suggests a specialized niche, where it may play a role in the complex microbiome of the stomach. Its unique morphological and physiological traits enable it to withstand the harsh acidic conditions prevalent in the gastric environment, potentially influencing the host's overall health and digestive processes. Understanding the specific adaptations of strain MM2005-126 may provide insights into its interactions within the host's microbiome and its potential implications for gastrointestinal health. This strain exemplifies the evolutionary strategies employed by microaerophilic bacteria to colonize and persist in highly specialized ecological niches, contributing to our broader understanding of microbial diversity and host-microbe interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILT00000000.1 Bac0013982 Helicobacter pylori strain MM2006-480 "Helicobacter pylori strain MM2006-480 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat within host organisms, particularly in the gastric environment of mammals. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, a condition commonly found in the gastric mucosa where it plays a role in the complex microbial ecosystem.↵↵As a member of the Helicobacter genus, strain MM2006-480 is adapted to life in a host-associated environment, suggesting a specialized niche that may influence its metabolic pathways and interactions with the host's immune system. The spirilla morphology of this strain may confer advantages in motility within the viscous gastric mucus, facilitating its colonization and persistence in the stomach.↵↵Further exploration of the ecological role of H. pylori strain MM2006-480 could provide insights into its impact on gastric health and disease, as well as its interactions with the host microbiome. Understanding these dynamics may reveal the potential for strain-specific adaptations that influence host-microbe relationships, highlighting the importance of this bacterium in the broader context of gastrointestinal microbiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILU00000000.1 Bac0013983 Helicobacter pylori strain MU2004-2 "Helicobacter pylori strain MU2004-2 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to host-associated environments, likely within the gastric niches of mammals. ↵↵As a member of the Helicobacter genus, this strain shares the distinctive morphological and physiological traits of its relatives, including the ability to survive in low-oxygen conditions, which is essential for colonization in the gastric mucosa where oxygen levels are typically reduced. The spirilla form enhances its motility, allowing it to navigate through the viscous gastric environment effectively. ↵↵Given its habitat and optimal growth conditions, H. pylori strain MU2004-2 may play a role in the complex interactions within the host's microbiome, potentially influencing gastric health and disease states. The presence of such microaerophilic bacteria in the stomach could suggest an evolutionary adaptation to the unique biochemical milieu present in this niche, illuminating the intricate relationships that exist within host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MILY00000000.1 Bac0013984 Pseudomonas putida strain KH-18-2 "Pseudomonas putida strain KH-18-2 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as a nonsporulating organism. This strain is a heterotroph, meaning it derives its energy from organic compounds, and it thrives in soil and wastewater environments. Its facultative nature allows it to adapt to varying oxygen levels, enabling it to survive both in aerobic and anaerobic conditions.↵↵Pseudomonas putida is known for its metabolic versatility, which facilitates its ability to degrade a wide range of organic pollutants. This trait is particularly relevant in bioremediation applications, where the bacterium can potentially be employed to mitigate environmental contamination. The ability to survive in diverse habitats, such as soil and wastewater, underscores its ecological significance, particularly in nutrient cycling and organic matter decomposition.↵↵Moreover, the adaptability of strain KH-18-2 to fluctuating oxygen levels enhances its potential utility in engineered bioprocesses, such as wastewater treatment systems. Understanding the specific metabolic pathways utilized by this strain could provide insights into its role in bioremediation and environmental sustainability, highlighting its importance in combating pollution and promoting soil health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 MING00000000.1 Bac0013985 Rossellomorea aquimaris strain SAMM Bacillati Bacillota Bacilli Caryophanales Bacillaceae Rossellomorea Rossellomorea aquimaris 189382 MINN00000000.1 Bac0013986 Pantoea deleyi strain LMG 24200 "Pantoea deleyi strain LMG 24200 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolic capabilities, indicating a versatile adaptation to varying oxygen conditions. This strain is non-spore-forming, which suggests a reliance on other survival strategies in response to environmental stresses rather than forming spores for resilience. ↵↵Pantoea species are often associated with plant environments, and while specific ecological roles of LMG 24200 are not detailed in the provided traits, its classification within the Pantoea genus may imply potential interactions with plant hosts or involvement in plant-associated microbiomes. The facultative nature of its oxygen requirement may enable this strain to thrive in diverse niches, including both oxygen-rich and oxygen-poor environments, which can be vital for its survival in fluctuating ecological conditions.↵↵The ability to adapt to different oxygen levels could also suggest a role in nutrient cycling within its habitat, potentially contributing to processes such as organic matter decomposition or nitrogen fixation. Understanding the functional roles of Pantoea deleyi strain LMG 24200 in its environment could provide insights into the complex interactions within microbial communities and their effects on ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea deleyi Gram-negative rod facultative aerobe/anaerobe non-spore-forming 470932 MIPO00000000.1 Bac0013987 Escherichia coli strain VL119 "Escherichia coli strain VL119 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain, like other members of the species, thrives optimally at a temperature of 37.0°C, which corresponds with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli strain VL119 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, which enhances its survival and versatility within various host conditions.↵↵The facultative anaerobic nature of E. coli strain VL119 suggests that it can utilize different metabolic pathways depending on the availability of oxygen, thereby contributing to its resilience and ecological success in diverse environments. This adaptability not only allows the bacterium to occupy ecological niches within the gastrointestinal tract of hosts but may also play a role in its interactions with the host microbiome, potentially influencing nutrient availability and metabolic processes. Overall, the traits of E. coli strain VL119 highlight its evolutionary advantage as a versatile inhabitant of host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MIWY00000000.1 Bac0013988 Stenotrophomonas maltophilia strain R5G "Stenotrophomonas maltophilia strain R5G is a Gram-negative, rod-shaped bacterium that exhibits aerobic growth and is capable of thriving in diverse habitats. This organism belongs to a genus known for its metabolic versatility, allowing it to adapt to various environmental conditions. ↵↵As an aerobic microbe, S. maltophilia strain R5G requires oxygen for its growth and energy production, which influences its ecological niches, particularly in environments where oxygen is readily available. The organism’s Gram-negative cell wall structure may confer resilience against certain antimicrobial agents, which is a notable characteristic of the genus.↵↵Stenotrophomonas maltophilia strains are often found in soil and water, as well as in association with plants, suggesting a potential role in nutrient cycling and plant interactions. The ability to inhabit multiple environments highlights the ecological plasticity of this bacterium and underscores its potential significance in both natural and anthropogenic ecosystems. Further exploration of strain R5G’s specific ecological roles could provide insights into its contributions to microbial community dynamics and environmental processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 MJAS00000000.1 Bac0013989 Desulfuribacillus stibiiarsenatis strain MLFW-2 "Desulfuribacillus stibiiarsenatis strain MLFW-2 is a Gram-negative, rod-shaped bacterium that exhibits spore-forming capabilities and thrives under strictly anaerobic conditions, with an optimal growth temperature of 32.0°C. This strain belongs to a group of microorganisms known for their unique metabolic pathways, particularly in the biogeochemical cycling of sulfur and other elements. ↵↵The Gram-negative nature of D. stibiiarsenatis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in its anaerobic habitat, such as resilience against oxidative stress. The ability to form spores suggests that this strain can endure unfavorable environmental conditions, potentially allowing it to survive in fluctuating ecosystems. ↵↵Further investigation of D. stibiiarsenatis strain MLFW-2 could provide insights into its role in bioremediation processes, particularly in environments contaminated with heavy metals or sulfur compounds, as the metabolic capabilities of this strain may facilitate the transformation or detoxification of these elements. Understanding the ecological roles of such organisms could contribute to advancements in environmental microbiology and biotechnological applications." Bacillati Bacillota Desulfuribacillia Desulfuribacillales Desulfuribacillaceae Desulfuribacillus Desulfuribacillus stibiiarsenatis Gram-negative rod anaerobic 32 mesophilic spore-forming 1390249 MJAT00000000.1 Bac0013990 Enterococcus hirae strain F0711D 102 "Enterococcus hirae strain F0711D 102 is a Gram-positive coccus, exhibiting a spherical shape characteristic of the Enterococcus genus. This strain is known to thrive in diverse habitats, including bat guano, dust, feces, small intestines, soil, and wastewater treatment plants. Its facultative anaerobic nature allows it to survive and grow in both aerobic and anaerobic environments, making it adaptable to a variety of ecological niches.↵↵The ability of Enterococcus hirae to inhabit environments such as the intestines of animals and human-associated waste suggests its potential role in nutrient cycling and microbial interactions within these ecosystems. Furthermore, its presence in wastewater treatment facilities indicates its involvement in bioremediation processes, where it may contribute to the breakdown of organic matter and the maintenance of microbial diversity. This adaptability and versatility underscore the importance of Enterococcus hirae strain F0711D 102 in both natural and engineered environments, highlighting its ecological significance in maintaining microbial balance and supporting ecosystem functions." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus hirae Positive Cocci Facultative anaerobe bat guano; dust; feces; small intestines; soil; wastewater treatment plant; water Human 1354 MJDV00000000.1 Bac0013991 Williamsia sp. 1135 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia sp. 1135 1889262 MJEI00000000.1 Bac0013992 Williamsia sp. 1138 298 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia sp. 1138 1903117 MJEJ00000000.2 Bac0013993 Frigoribacterium sp. MCBA15_019 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. MCBA15_019 1898745 MJGS00000000.1 Bac0013994 Curtobacterium sp. MMLR14_010 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MMLR14_010 1898743 MJGV00000000.1 Bac0013995 Curtobacterium sp. MMLR14_014 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MMLR14_014 1898744 MJGX00000000.1 Bac0013996 Anaerostipes sp. 992a Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes sp. 992a 1261637 MJIG00000000.1 Bac0013997 Photobacterium proteolyticum strain 13-12 "Photobacterium proteolyticum strain 13-12 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolic capabilities. This strain does not form spores and thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic conditions. Its ability to grow in both the presence and absence of oxygen suggests a versatile metabolic adaptability, allowing it to occupy various ecological niches.↵↵The unique combination of traits exhibited by Photobacterium proteolyticum strain 13-12 may contribute to its role in nutrient cycling within its environment, as its proteolytic nature could facilitate the breakdown of organic matter. This process not only aids in the recycling of nutrients but also enhances the availability of amino acids and other compounds essential for the growth of surrounding microorganisms. The bacterium's adaptability to different oxygen levels further underscores its potential significance in diverse ecosystems, where varying conditions may affect the dynamics of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium proteolyticum Gram-negative rod motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 1903952 MJIL00000000.1 Bac0013998 Helicobacter pylori strain 132A "Helicobacter pylori strain 132A is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically existing as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated organism, often found in the gastric mucosa of mammals. The microaerophilic nature of H. pylori strain 132A indicates its preference for low oxygen environments, a condition prevalent in the stomach, where it can efficiently colonize and adapt to the acidic gastric milieu.↵↵The spirilla morphology of this strain not only facilitates motility through the viscous environment of gastric mucus but may also play a role in its ability to evade host immune responses. The precise adaptation of H. pylori strain 132A to its host-associated habitat underscores its evolutionary success in surviving in a challenging environment, where it can influence gastric physiology. This unique adaptation may provide insights into the complex interactions between host and microbe, particularly in the context of gastric health and disease. Understanding these traits can contribute to a broader comprehension of H. pylori's role in gastrointestinal ecology and its potential implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MJMX00000000.1 Bac0013999 Desulfovibrio sp. MES5 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. MES5 1899016 MJUZ00000000.1 Bac0014000 Corynebacterium sp. BCW_4722 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. BCW_4722 1972128 MKAX00000000.1 Bac0014001 Vibrio rotiferianus strain HM-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio rotiferianus Marine 190895 MKFT00000000.1 Bac0014002 Aeromonas sobria strain 08005 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sobria 646 MKFU00000000.1 Bac0014003 Xaviernesmea rhizosphaerae strain MH17 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Xaviernesmea Xaviernesmea rhizosphaerae 1672749 MKIO00000000.1 Bac0014004 Kocuria sp. CNJ-770 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. CNJ-770 1904964 MKJW00000000.1 Bac0014005 Serinicoccus sp. CUA-874 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Serinicoccus Serinicoccus sp. CUA-874 1517939 MKJZ00000000.1 Bac0014006 Ornithinimicrobium sp. CNJ-824 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium sp. CNJ-824 1904966 MKKA00000000.1 Bac0014007 Serinicoccus sp. CNJ-927 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Serinicoccus Serinicoccus sp. CNJ-927 1904970 MKKF00000000.1 Bac0014008 Rhodococcus sp. 1163 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 1163 1905289 MKKX00000000.1 Bac0014009 Methylomonas sp. LWB Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas sp. LWB 1905845 MKMC00000000.1 Bac0014010 Pseudomonas koreensis strain IMBL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 MKQJ00000000.1 Bac0014011 Paenibacillus odorifer strain FSL H7-0604 "Paenibacillus odorifer strain FSL H7-0604 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and is capable of sporulation. This strain thrives optimally at 30.0°C and exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen conditions in its environment. As a chemoheterotroph, P. odorifer strain FSL H7-0604 utilizes organic compounds as its energy source, indicating a reliance on the decomposition of organic matter for growth.↵↵The ability to form spores suggests that this strain can endure unfavorable environmental conditions, thereby enhancing its survival and dispersal capabilities. Its habitat is characterized as multiple, which may imply a versatile ecological niche that could encompass soil, plant material, or other organic-rich environments. ↵↵The adaptability of P. odorifer strain FSL H7-0604 to different habitats and its facultative anaerobic nature may allow it to play a significant role in nutrient cycling, particularly in environments where organic matter is abundant and oxygen availability fluctuates. This dual capability not only facilitates its survival but also positions it as a potential contributor to the microbiome dynamics in diverse ecosystems." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus odorifer Positive Rod Yes 1 Facultative Anaerobe 30 Chemoheterotroph Mesophilic Multiple Chains Sporulating 189426 MKQP00000000.1 Bac0014012 Actinokineospora bangkokensis strain 44EHW "Actinokineospora bangkokensis strain 44EHW is a Gram-positive, aerobic, rod-shaped bacterium known for its ability to form spores. This strain exemplifies the characteristics typical of the genus Actinokineospora, which is recognized for its filamentous structure and ability to thrive in oxygen-rich environments. The Gram-positive nature of strain 44EHW suggests a robust cell wall structure, which is a common feature among many actinobacteria and contributes to their resilience in various environmental conditions.↵↵The spore-forming capability of this strain indicates a potential for survival in adverse conditions, allowing it to endure periods of nutrient scarcity or environmental stress. Such traits suggest that Actinokineospora bangkokensis strain 44EHW may play a role in soil ecosystems where it can contribute to the breakdown of organic matter and nutrient cycling. Its aerobic requirements further imply that it may be involved in processes that require oxygen, possibly influencing the composition of microbial communities in its native habitat. ↵↵Given these characteristics, Actinokineospora bangkokensis strain 44EHW could be an important player in aerobic degradation processes, potentially aiding in biotechnological applications related to environmental sustainability and the bioremediation of contaminated sites. Further research may elucidate its specific ecological roles and interactions within microbial communities." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora bangkokensis Gram-positive rod non-motile aerobic spore-forming 1193682 MKQR00000000.1 Bac0014013 Microbacterium sp. 69-10 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. 69-10 1895783 MKRT00000000.1 Bac0014014 Armatimonadetes bacterium 55-13 Bacillati Armatimonadota Armatimonadetes bacterium 55-13 1895717 MKRX00000000.1 Bac0014015 Nitrobacter sp. 62-23 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Nitrobacter Nitrobacter sp. 62-23 1895798 MKSM00000000.1 Bac0014016 Alphaproteobacteria bacterium 33-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium 33-17 1895704 MKSX00000000.1 Bac0014017 Alphaproteobacteria bacterium 43-37 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium 43-37 1895707 MKSY00000000.1 Bac0014018 Bacteroidetes bacterium 37-13 Pseudomonadati Bacteroidota Bacteroidetes bacterium 37-13 1895921 MKTC00000000.1 Bac0014019 Bacteroidia bacterium 43-41 Pseudomonadati Bacteroidota Bacteroidia Bacteroidia bacterium 43-41 1895720 MKTD00000000.1 Bac0014020 Cellulomonas sp. 73-92 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. 73-92 1895740 MKTH00000000.1 Bac0014021 Cellulomonas sp. 73-145 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. 73-145 1895739 MKTI00000000.1 Bac0014022 Flavobacterium sp. 40-81 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. 40-81 1896169 MKTM00000000.1 Bac0014023 Legionella sp. 39-23 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella sp. 39-23 1895902 MKTO00000000.1 Bac0014024 Microbacterium sp. 71-36 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. 71-36 1895788 MKTP00000000.1 Bac0014025 Mucilaginibacter sp. 44-25 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp. 44-25 1895794 MKTS00000000.1 Bac0014026 Sphingobacteriales bacterium 50-39 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriales bacterium 50-39 1895841 MKTZ00000000.1 Bac0014027 Spirosoma sp. 48-14 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma sp. 48-14 1895854 MKUD00000000.1 Bac0014028 Thiobacillus sp. 65-1402 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Thiobacillus Thiobacillus sp. 65-1402 1895861 MKUG00000000.1 Bac0014029 Caedibacter sp. 38-128 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Fastidiosibacteraceae Caedibacter Caedibacter sp. 38-128 1895736 MKUU00000000.1 Bac0014030 Chloroflexi bacterium 44-23 Bacillati Chloroflexota Chloroflexi bacterium 44-23 1895927 MKUW00000000.1 Bac0014031 Devosia sp. 66-22 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. 66-22 1895753 MKUZ00000000.1 Bac0014032 Devosia sp. 67-54 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. 67-54 1895754 MKVA00000000.1 Bac0014033 Dysgonomonas sp. 37-18 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Dysgonomonas Dysgonomonas sp. 37-18 1895907 MKVC00000000.1 Bac0014034 Candidatus Kapaibacterium thiocyanatum Pseudomonadati Candidatus Kapaibacteriota Candidatus Kapaibacteriia Candidatus Kapaibacteriales Candidatus Kapaibacteriaceae Candidatus Kapaibacterium Candidatus Kapaibacterium thiocyanatum 1895771 MKVH00000000.1 Bac0014035 Micrococcales bacterium 73-13 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcales bacterium 73-13 1895791 MKVN00000000.1 Bac0014036 Nitrosospira sp. 56-18 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. 56-18 1895901 MKVR00000000.1 Bac0014037 Paludibacter sp. 47-17 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Paludibacteraceae Paludibacter Paludibacter sp. 47-17 1895899 MKVT00000000.1 Bac0014038 Rhizobiales bacterium 62-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium 62-17 1895810 MKVW00000000.1 Bac0014039 Rhizobiales bacterium 62-47 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium 62-47 1895811 MKVX00000000.1 Bac0014040 Rhizobiales bacterium 64-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiales bacterium 64-17 1895814 MKWA00000000.1 Bac0014041 Rhodobacterales bacterium 65-51 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacterales bacterium 65-51 1895824 MKWD00000000.1 Bac0014042 Streptomyces sp. CC53 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CC53 1906740 MKXB00000000.1 Bac0014043 Lactobacillus crispatus strain DISK12 "Lactobacillus crispatus strain DISK12 is a Gram-positive, rod-shaped bacterium that typically occurs in chains. This strain is nonsporulating and exhibits facultative anaerobic respiration, allowing it to thrive in environments with varying oxygen levels. It is optimally adapted to a temperature of 37.0°C, suggesting a preference for mammalian host environments, where it can be commonly found. ↵↵As a member of the Lactobacillus genus, strain DISK12 is likely involved in fermentation processes, contributing to the production of lactic acid, which may play a significant role in maintaining a balanced microbiota within its host. The association with host organisms indicates potential symbiotic relationships, potentially aiding in digestion or competing with pathogenic microbes. ↵↵The unique chain arrangement of Lactobacillus crispatus strain DISK12 may influence its interaction with the host's immune system and other microbial populations, as this morphology can enhance surface area for adherence and metabolic interactions. This characteristic may also facilitate its survival in the competitive environments of the gastrointestinal tract or other host-associated niches. Understanding the specific ecological roles of strain DISK12 could provide insights into its potential applications in probiotic therapies or the maintenance of gut health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 MKXG00000000.1 Bac0014044 Paenibacillus sp. GM1FR Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. GM1FR 2059267 MKZL00000000.1 Bac0014045 Bacillus pumilus strain GM3FR "Bacillus pumilus strain GM3FR is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrives in terrestrial habitats as an aerobic organism. This strain is part of the Bacillus genus, which is known for its robust resilience and ability to form spores, allowing it to survive in diverse environmental conditions.↵↵The Gram-positive nature of Bacillus pumilus strain GM3FR indicates a thick peptidoglycan layer in its cell wall, which is characteristic of its genus and contributes to its stability and resistance to certain environmental stresses. The sporulation capability suggests that this strain can transition into a dormant state, forming spores that facilitate survival in unfavorable conditions, such as nutrient deprivation or desiccation.↵↵As an aerobic bacterium, Bacillus pumilus strain GM3FR requires oxygen for its metabolic processes, which may influence its distribution in soil environments where oxygen availability can vary. Its terrestrial habitat implies a role in soil ecosystems, potentially contributing to nutrient cycling and organic matter decomposition. ↵↵This strain exemplifies the ecological versatility of Bacillus species, as its ability to form spores not only enhances its survival but may also play a significant role in the dissemination of genetic material and beneficial traits within microbial communities in soil environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 MKZN00000000.1 Bac0014046 Pseudomonas putida strain GM4FR "Pseudomonas putida strain GM4FR is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a nonsporulating organism. This strain is known for its heterotrophic metabolism, utilizing organic compounds as energy sources, which allows it to thrive in diverse environments, particularly in soil and wastewater habitats. As a facultative anaerobe, Pseudomonas putida strain GM4FR can adapt to varying oxygen levels, enabling it to survive both in the presence and absence of oxygen.↵↵The ecological role of Pseudomonas putida strain GM4FR in soil and wastewater environments is significant, as it contributes to the biodegradation of organic pollutants, thereby playing a vital part in bioremediation processes. Its ability to metabolize a wide range of organic substrates enhances its potential for use in environmental applications aimed at reducing contaminant levels in polluted soils and water systems. This adaptability not only underscores the organism's ecological versatility but also highlights its importance in microbial communities involved in nutrient cycling and organic matter decomposition. Further research could elucidate the specific pathways utilized by this strain in pollutant degradation, thereby enhancing our understanding of its role in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 MKZO00000000.1 Bac0014047 Rodentibacter caecimuris strain 2002178011 "Rodentibacter caecimuris strain 2002178011 is a Gram-negative, rod-shaped bacterium. This strain exemplifies the morphological characteristics typical of the Rodentibacter genus, which is notable for its association with rodent hosts. The Gram-negative classification indicates that this bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and potential hosts.↵↵The rod shape of Rodentibacter caecimuris strain 2002178011 facilitates motility and colonization, allowing it to adapt to various ecological niches within the gastrointestinal tracts of rodents. While specific metabolic capabilities and ecological roles of this strain have not been detailed, the presence of such bacteria in rodent microbiomes can be significant for nutrient cycling and host digestion, potentially aiding in the breakdown of complex substrates.↵↵The identification of this strain contributes to the understanding of microbial diversity associated with rodent species and highlights the ecological importance of gastrointestinal microbiota in maintaining host health and ecosystem balance. Further studies could elucidate the specific interactions between Rodentibacter caecimuris strain 2002178011 and its rodent hosts, shedding light on the broader implications for rodent biology and the microbial ecology of their habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter caecimuris negative Rod 1796644 MLAD00000000.1 Bac0014048 Rodentibacter ratti strain Ac81 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter ratti 1906745 MLAG00000000.1 Bac0014049 Rodentibacter ratti strain Ppn157 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter ratti 1906745 MLAH00000000.1 Bac0014050 Corynebacterium sp. NML130628 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. NML130628 1906333 MLAL00000000.1 Bac0014051 Helicobacter sp. 12S02232-10 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 12S02232-10 1476197 MLAQ00000000.1 Bac0014052 Helicobacter sp. 13S00482-2 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 13S00482-2 1476200 MLAT00000000.1 Bac0014053 Marine bacterium AO1-C Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae marine bacterium AO1-C 1905359 MLAY00000000.1 Bac0014054 Desulfovibrio sp. DV Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. DV 1844708 MLBG00000000.1 Bac0014055 Mangrovactinospora gilvigrisea strain MUSC 26 200 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Mangrovactinospora Mangrovactinospora gilvigrisea 1428644 MLCF00000000.1 Bac0014056 Alkanindiges hydrocarboniclasticus strain H1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Alkanindiges Alkanindiges hydrocarboniclasticus 1907941 MLCN00000000.1 Bac0014057 Pseudomonas avellanae strain R25260 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas avellanae 46257 MLEG00000000.1 Bac0014058 Pseudomonas syringae group genomosp. 3 strain RM1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251701 MLEU00000000.1 Bac0014059 Pantoea conspicua strain LMG 24534 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea conspicua 472705 MLFN00000000.1 Bac0014060 Pantoea rwandensis strain LMG 26275 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea rwandensis 1076550 MLFR00000000.1 Bac0014061 Pantoea wallisii strain LMG 26277 "Pantoea wallisii strain LMG 26277 is a Gram-negative, non-spore-forming rod that exhibits facultative aerobic and anaerobic growth. This bacterium belongs to the genus Pantoea, which is known for its diverse metabolic capabilities and presence in various environments, including plant and soil ecosystems. The rod-shaped morphology is characteristic of many members within the Enterobacteriaceae family, indicating a potential adaptability to different ecological niches.↵↵As a facultative aerobe/anaerobe, Pantoea wallisii strain LMG 26277 can thrive in both oxygen-rich and oxygen-poor environments, suggesting a versatile metabolic capacity that may allow it to exploit a variety of substrates. This adaptability is advantageous for survival in fluctuating environmental conditions, such as those encountered in soil or during interactions with plant hosts.↵↵The presence of Pantoea wallisii in diverse settings underscores its ecological significance, particularly in nutrient cycling and plant-microbe interactions. The strain's ability to grow in various oxygen conditions may contribute to its role in soil health and plant growth enhancement, making it a candidate for further studies in agricultural microbiology and bioremediation applications. Understanding the specific interactions and contributions of this strain within its ecosystem could provide insights into its potential utility in sustainable agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea wallisii Gram-negative rod facultative aerobe/anaerobe non-spore-forming 1076551 MLFS00000000.1 Bac0014062 Rodentibacter mrazii strain Ppn418 "Rodentibacter mrazii strain Ppn418 is a Gram-negative bacterium classified under the genus Rodentibacter, characterized by its microaerophilic oxygen requirement. This strain exhibits a specific adaptation to environments with reduced oxygen concentrations, suggesting a potential ecological niche in habitats where oxygen levels are limited but not absent. ↵↵As a microaerophile, R. mrazii strain Ppn418 likely thrives in environments such as the gastrointestinal tracts of rodents or other mammals, where oxygen levels are lower than atmospheric conditions but higher than anaerobic environments. The Gram-negative nature of this bacterium implies the presence of a complex outer membrane, which may contribute to its resilience and adaptability in fluctuating environmental conditions.↵↵Understanding the growth characteristics and environmental preferences of Rodentibacter mrazii strain Ppn418 can provide insights into its role in microbial communities, particularly within its host organisms. This strain could serve as a model for studying the interactions between microaerophilic bacteria and their hosts, highlighting the importance of oxygen gradients in microbial ecology. Further investigation into its metabolic pathways and interactions with other microbial species could reveal its contributions to the gut microbiome's overall functionality and health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter mrazii Gram-negative non-motile microaerophile 1908257 MLHG00000000.1 Bac0014063 Mycobacterium syngnathidarum strain 24999 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium syngnathidarum 1908205 MLHV00000000.1 Bac0014064 Mycobacteroides chelonae strain 1558 "Mycobacteroides chelonae strain 1558 is a rod-shaped bacterium characterized by its nonsporulating nature. This microbe has been identified in diverse habitats, including biofilms, dust, healthcare settings, soil, and water. The ability of M. chelonae strain 1558 to thrive in such varied environments suggests a degree of ecological versatility, which may contribute to its persistence in both natural and anthropogenic settings.↵↵The presence of this strain in healthcare environments raises considerations for its potential interactions within biofilms, where it may play a role in the complex microbial communities found in these settings. Biofilms are known to provide a protective environment for bacteria, potentially enhancing their survival and resistance to antimicrobial agents. Furthermore, the detection of M. chelonae strain 1558 in dust indicates its capacity for airborne dissemination, which could facilitate its spread in indoor environments, particularly in healthcare facilities.↵↵The identification of this strain in soil and water environments emphasizes its ecological role and suggests potential pathways for nutrient cycling and microbial interactions in these ecosystems. Understanding the specific ecological functions and interactions of Mycobacteroides chelonae strain 1558 in biofilms and other habitats may provide insights into its behavior and resilience in both natural and engineered environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides chelonae Rod No 1 biofilms; dust; healthcare settings; soil; water; Water Nonsporulating 1774 MLIJ00000000.1 Bac0014065 Mycobacteroides franklinii strain 1559 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides franklinii 948102 MLIK00000000.1 Bac0014066 Corynebacterium sp. HMSC074A01 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC074A01 1715030 MLJM00000000.1 Bac0014067 Treponema sp. CETP13 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. CETP13 1908540 MLPZ00000000.1 Bac0014068 Mycobacterium talmoniae strain MO-5499 "Mycobacterium talmoniae strain MO-5499 is a Gram-positive, rod-shaped bacterium that exhibits optimal growth at a temperature of 37.0°C. This strain is part of the Mycobacterium genus, known for its complex cell wall structure, which is rich in mycolic acids, contributing to its unique staining properties and resilience in various environments.↵↵The Gram-positive nature of M. talmoniae strain MO-5499 suggests the presence of a thick peptidoglycan layer that may play a role in its survival and resistance to certain environmental stresses. The rod shape is characteristic of many mycobacteria, facilitating cellular processes such as nutrient absorption and motility, albeit limited in comparison to other bacterial morphologies.↵↵The optimal growth temperature of 37.0°C indicates a preference for conditions that are typically found in warm-blooded hosts, which may suggest a potential association with such environments. This trait aligns with the ecological niche of many mycobacteria, which are often found in environments associated with higher temperatures.↵↵In summary, Mycobacterium talmoniae strain MO-5499's Gram-positive nature, rod shape, and optimal growth temperature provide insights into its possible adaptations for survival in warm, nutrient-rich environments, highlighting the intricate relationship between microbial physiology and ecological niches. Further research could elucidate its specific ecological roles or potential interactions within its environment." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium talmoniae Gram-positive rod 37 mesophilic 1858794 MLQM00000000.1 Bac0014069 Anaerobacillus alkalilacustris strain DSM 18345 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Anaerobacillus Anaerobacillus alkalilacustris anaerobic 393763 MLQR00000000.1 Bac0014070 Anaerobacillus alkalidiazotrophicus strain DSM 22531 "Anaerobacillus alkalidiazotrophicus strain DSM 22531 is a Gram-positive, rod-shaped bacterium that thrives optimally at a temperature of 32.0°C. As a member of the genus Anaerobacillus, this strain is adapted to anaerobic conditions, suggesting a potential role in environments where oxygen is limited. The rod shape of the organism may confer advantages in motility or surface adherence, which could influence its interactions within its habitat.↵↵Given its alkaliphilic nature, it is reasonable to infer that A. alkalidiazotrophicus strain DSM 22531 is capable of surviving and potentially thriving in alkaline environments, which could include alkaline soils or sediments. This adaptation might allow the strain to participate in nitrogen fixation processes, a trait implied by its designation as a diazotroph. The capability to fix atmospheric nitrogen could be an essential ecological function, contributing to the nitrogen content of its environment and supporting the growth of other organisms in its vicinity.↵↵In summary, Anaerobacillus alkalidiazotrophicus strain DSM 22531 exemplifies an organism adapted to specific environmental conditions, highlighting the intricate relationships between microbial life and its abiotic surroundings. Further exploration of its metabolic pathways and ecological roles could provide insights into its contribution to nitrogen cycling in alkaline ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Anaerobacillus Anaerobacillus alkalidiazotrophicus Gram-positive rod 32 mesophilic 472963 MLQS00000000.1 Bac0014071 Streptomyces colonosanans strain MUSC 93 166 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces colonosanans 1428652 MLYP00000000.1 Bac0014072 Bacillus sp. MUM 13 186 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MUM 13 1678001 MLYQ00000000.1 Bac0014073 Alphaproteobacteria bacterium 13_2_20CM_2_64_7 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium 13_2_20CM_2_64_7 1803507 MNDV00000000.1 Bac0014074 Candidatus Rokubacteria bacterium 13_1_40CM_69_27 Candidatus Rokuibacteriota Candidatus Rokubacteria bacterium 13_1_40CM_69_27 1805367 MNEF00000000.1 Bac0014075 Acidobacteria bacterium 13_1_40CM_56_16 Pseudomonadati Acidobacteriota Acidobacteria bacterium 13_1_40CM_56_16 1803458 MNEY00000000.1 Bac0014076 Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5 Candidatus Rokuibacteriota Candidatus Rokubacteria bacterium 13_1_40CM_4_69_5 1805364 MNFC00000000.1 Bac0014077 Crenarchaeota archaeon 13_1_40CM_3_53_5 Thermoproteati Thermoproteota Crenarchaeota archaeon 13_1_40CM_3_53_5 1805098 MNGL00000000.1 Bac0014078 Crenarchaeota archaeon 13_1_20CM_2_53_14 Thermoproteati Thermoproteota Crenarchaeota archaeon 13_1_20CM_2_53_14 1805094 MNKC00000000.1 Bac0014079 Crenarchaeota archaeon 13_1_20CM_2_51_8 Thermoproteati Thermoproteota Crenarchaeota archaeon 13_1_20CM_2_51_8 1805093 MNKD00000000.1 Bac0014080 Acidobacteria bacterium 13_1_20CM_2_55_15 Pseudomonadati Acidobacteriota Acidobacteria bacterium 13_1_20CM_2_55_15 1803424 MNKP00000000.1 Bac0014081 Bifidobacterium pseudocatenulatum strain 1E "Bifidobacterium pseudocatenulatum strain 1E is a Gram-positive, anaerobic bacterium commonly found in the gastrointestinal tracts of adults and breastfed infants, contributing to the gut microbiomes of these hosts. This species is particularly prevalent in the infant gut and is an integral component of the infant gut microbiota, where it is believed to play a role in the development of a healthy microbiome. ↵↵As a member of the Bifidobacterium genus, strain 1E is adapted to thrive in anaerobic conditions, which is characteristic of the gut environment. The presence of this strain in both adult and infant gastrointestinal tracts suggests its potential significance in maintaining gut health across different life stages. Additionally, its identification within the Vietnamese gut microbiota indicates that it may exhibit localized adaptations or interactions specific to this population. ↵↵The ability of Bifidobacterium pseudocatenulatum strain 1E to inhabit diverse gut environments underscores its ecological versatility and highlights the importance of such microbes in the microbial ecology of the gastrointestinal tract. This strain may contribute to the modulation of gut health by influencing microbial composition and function, hinting at its potential role in supporting digestive health and immune function in both infants and adults." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum Positive Anaerobe gastrointestinal tracts of adults and breastfed infants; gut; gut microbiomes; infant gut; infant gut microbiota; Vietnamese gut microbiota 28026 MNLB00000000.1 Bac0014082 Vibrio splendidus strain VaAn Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 MNLE00000000.1 Bac0014083 Neisseria meningitidis strain S00-1225 "Neisseria meningitidis strain S00-1225 is a Gram-negative coccus that typically exhibits a paired arrangement. This strain thrives in aerobic conditions, reflecting its requirement for oxygen to sustain metabolic processes. It is optimally adapted to a temperature of 35.0°C, which aligns closely with the physiological temperature of the human body, suggesting its potential role in host-associated environments.↵↵As a member of the Neisseria genus, this strain is generally associated with human hosts, highlighting its ecological niche within the human microbiome or as a pathogen in various clinical contexts. The pairing of the cocci is characteristic of this genus, which can facilitate interactions and potential biofilm formation in host tissues. ↵↵Given its habitat and optimal growth conditions, Neisseria meningitidis strain S00-1225 may play a role in the complex dynamics of host-associated microbial communities, contributing to both commensal relationships and potential pathogenicity under specific circumstances. Further studies are warranted to elucidate its interactions within these communities and its implications for human health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 MNMJ00000000.1 Bac0014084 Pseudomonas cedrina subsp. cedrina strain DSM 17516 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cedrina 651740 MNPW00000000.1 Bac0014085 Alistipes putredinis "Alistipes putredinis is a Gram-negative bacterium, notable for its contribution to the microbiota of the human gastrointestinal tract. As a member of the Bacteroidetes phylum, this microbe is characterized by its rod-shaped morphology. A. putredinis has garnered interest in microbiological research due to its association with various aspects of gut health and its potential role in the fermentation of complex carbohydrates.↵↵The Gram-negative nature of A. putredinis suggests a distinctive cellular structure, featuring an outer membrane that includes lipopolysaccharides, which can influence host interactions. This structural characteristic may play a role in the microbe's survival and function within the competitive environment of the gut microbiome. ↵↵While specific pathogenicity, host interactions, and ecological roles of A. putredinis require further elucidation, its presence in the gut suggests that it may contribute to nutrient metabolism and the overall homeostasis of the intestinal ecosystem. The metabolic capabilities of A. putredinis, particularly in relation to polysaccharide degradation, underscore its potential significance in maintaining gut health and influencing host metabolic profiles. Further research into this bacterium could deepen our understanding of the complex interdependencies within the gut microbiome and their implications for human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes putredinis negative 28117 MNQH00000000.1 Bac0014086 Bacteroides sp. 43_108 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 43_108 1896974 MNQS00000000.1 Bac0014087 Parabacteroides sp. merdae-related_45_40 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. merdae-related_45_40 1897013 MNQY00000000.1 Bac0014088 Candidatus Melainabacteria bacterium 35_41 Bacillati Candidatus Melainabacteria Candidatus Melainabacteria bacterium 35_41 1897008 MNTS00000000.1 Bac0014089 Candidatus Micrarchaeota archaeon CG1_02_47_40 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG1_02_47_40 1805247 MNVE00000000.1 Bac0014090 Candidatus Micrarchaeota archaeon CG1_02_55_22 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG1_02_55_22 1805250 MNVH00000000.1 Bac0014091 Candidatus Pacearchaeota archaeon CG1_02_31_27 Nanobdellati Candidatus Pacearchaeota archaeon CG1_02_31_27 1805294 MNVW00000000.1 Bac0014092 Proteobacteria bacterium CG1_02_64_396 Pseudomonadati Pseudomonadota Proteobacteria bacterium CG1_02_64_396 1805333 MNWR00000000.1 Bac0014093 Candidatus Woesearchaeota archaeon CG1_02_33_12 Nanobdellati Candidatus Woesearchaeota Candidatus Woesearchaeota archaeon CG1_02_33_12 1805422 MNWU00000000.1 Bac0014094 Elusimicrobia bacterium CG1_02_37_114 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium CG1_02_37_114 1805131 MNXB00000000.1 Bac0014095 Betaproteobacteria bacterium CG2_30_68_42 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium CG2_30_68_42 1805051 MNXU00000000.1 Bac0014096 Deltaproteobacteria bacterium CG2_30_66_27 Deltaproteobacteria Deltaproteobacteria bacterium CG2_30_66_27 1805127 MNYH00000000.1 Bac0014097 Ignavibacteria bacterium CG2_30_36_16 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium CG2_30_36_16 1805221 MNYQ00000000.1 Bac0014098 Oscillatoriales cyanobacterium CG2_30_40_61 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriales cyanobacterium CG2_30_40_61 1805291 MNYZ00000000.1 Bac0014099 Syntrophobacteraceae bacterium CG2_30_61_12 Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacteraceae bacterium CG2_30_61_12 1805379 MNZR00000000.1 Bac0014100 Candidatus Altarchaeum sp. CG2_30_32_3053 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeaceae Candidatus Altarchaeum Candidatus Altarchaeum sp. CG2_30_32_3053 1803514 MNZY00000000.1 Bac0014101 Bifidobacterium longum subsp. suis strain BSM11-5 247 "Bifidobacterium longum subsp. suis strain BSM11-5 247 is a Gram-positive, rod-shaped bacterium characterized by its growth in clusters, pairs, or as single cells. This strain is nonsporulating and exhibits optimal growth at a temperature of 37.0°C, aligning with the physiological conditions typically found within host-associated environments. As an anaerobe, B. longum subsp. suis strain BSM11-5 247 thrives in oxygen-depleted conditions, which are commonly encountered in the gastrointestinal tracts of various hosts.↵↵The habitat of this strain emphasizes its potential role in the microbiota of its host, suggesting it may contribute to the maintenance of gut health and the modulation of metabolic processes. Given its association with a host, this strain may be involved in the fermentation of dietary fibers, producing beneficial short-chain fatty acids that can positively influence host metabolism and immune function. The unique ecological niche occupied by B. longum subsp. suis strain BSM11-5 247 highlights its potential importance in the complex interplay between microbiota and host biology, although specific interactions and functions remain to be elucidated." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 MOAE00000000.1 Bac0014102 Bifidobacterium longum subsp. infantis strain TPY12-1 485 "Bifidobacterium longum subsp. infantis strain TPY12-1 485 is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in pairs, clusters, or as single cells. This strain is an anaerobe, thriving in environments devoid of oxygen, which is characteristic of its habitat, primarily associated with host organisms, particularly in the gastrointestinal tract of infants. The optimal temperature for growth is around 37.0°C, aligning with the physiological conditions of its host.↵↵Given its anaerobic nature and association with the gut microbiota, Bifidobacterium longum subsp. infantis strain TPY12-1 485 plays a critical role in the digestion and fermentation of dietary fibers, contributing to the production of short-chain fatty acids that are beneficial for gut health. This strain's specific adaptations to its host-associated habitat suggest that it may have evolved mechanisms to efficiently utilize the nutrients available in the infant gut, providing insights into the co-evolution of gut microbiota and their hosts. Such interactions are essential for establishing a healthy microbiome during early life, underscoring the importance of this strain in the development of infant gut health and overall well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 MOAF00000000.1 Bac0014103 Pseudomonas chlororaphis strain 14D6 "Pseudomonas chlororaphis strain 14D6 is a Gram-negative, rod-shaped bacterium primarily found in the nodules of Chamaecytisus albus, as well as in the rhizosphere and root nodules of various plants. This strain is part of a diverse group of Pseudomonas species known for their metabolic versatility and ecological significance in soil environments.↵↵The presence of Pseudomonas chlororaphis strain 14D6 in the nodules of Chamaecytisus albus suggests a potential role in plant-microbe interactions, possibly facilitating nitrogen fixation or influencing plant health through beneficial microbial activity. The rhizosphere, where this bacterium is also located, serves as a critical zone of interaction between soil microorganisms and plant roots, further emphasizing the importance of Pseudomonas chlororaphis strain 14D6 in soil ecology.↵↵Given its habitat and morphology, Pseudomonas chlororaphis strain 14D6 may contribute to nutrient cycling and soil health, potentially aiding in the promotion of plant growth and resilience. Its ability to inhabit specific niches within the plant root environment highlights its adaptive capabilities and suggests a functional role in the microbial community dynamics of the rhizosphere. This strain exemplifies the complex interactions that occur within soil ecosystems, reinforcing the significance of microbial inhabitants in supporting plant vitality and ecosystem stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis negative Rod nodules of Chamaecytisus albus; rhizosphere; root nodules 587753 MOAL00000000.1 Bac0014104 Pseudomonas canadensis strain 36C8 "Pseudomonas canadensis strain 36C8 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments and shows optimal growth at a temperature of 29.0°C. This strain does not possess the ability to form spores, which is characteristic of many members of the Pseudomonas genus. Its Gram-negative nature suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a common trait that can influence its interactions with various substrates and environments.↵↵The aerobic respiration requirement of strain 36C8 indicates a dependency on oxygen for metabolic activity, which may confer advantages in environments where oxygen is readily available. This trait may also influence its ecological niche, potentially allowing it to outcompete other microorganisms in similar habitats. The optimal growth temperature of 29.0°C suggests that this strain may be well adapted to environments that are temperate, possibly indicating its role in soil or aquatic ecosystems where such thermal conditions are prevalent.↵↵Understanding the physiological traits of Pseudomonas canadensis strain 36C8 can provide insights into its potential roles in biogeochemical cycles, particularly in nutrient cycling within its native habitat. The strain's aerobic metabolism and non-spore-forming nature may allow it to rapidly respond to environmental changes, highlighting its potential adaptability and ecological significance in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas canadensis Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 915099 MOAZ00000000.1 Bac0014105 Pseudomonas frederiksbergensis strain 94G2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 MOBL00000000.1 Bac0014106 Pseudomonas lini strain 48C10 48C10_NODE_225 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lini 163011 MOBN00000000.1 Bac0014107 Pseudomonas frederiksbergensis strain 37A10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 MOBQ00000000.1 Bac0014108 Pseudomonas fluorescens strain 36F3 "Pseudomonas fluorescens strain 36F3 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 25.0°C and is classified as a heterotroph, indicating that it derives its energy from organic compounds. As an aerobic organism, P. fluorescens strain 36F3 requires oxygen for its metabolic processes, aligning with the general characteristics observed in the Pseudomonas genus.↵↵The habitat of Pseudomonas fluorescens strain 36F3 is noted to be diverse, suggesting that this strain may occupy a variety of ecological niches where organic matter is present. Its versatility in energy utilization and growth conditions may contribute to its role in various environmental processes, including the degradation of organic pollutants and the cycling of nutrients. ↵↵The ability of Pseudomonas fluorescens strain 36F3 to thrive in multiple habitats underscores its ecological significance, particularly in soil and water environments where it may interact with other microorganisms and contribute to ecosystem health and stability. This adaptability may also render it a valuable candidate for bioremediation applications, enhancing its importance in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 MOBS00000000.1 Bac0014109 Pseudomonas fluorescens strain 48D1 "Pseudomonas fluorescens strain 48D1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, deriving its energy from organic compounds, and it thrives optimally at a temperature of 25°C. As an aerobic organism, it requires oxygen for growth, which aligns with its metabolic processes.↵↵Pseudomonas fluorescens strains are known for their versatility and adaptability, often found in diverse habitats that include soil, water, and plant surfaces. This wide distribution may be attributed to their metabolic flexibility and ability to utilize a variety of organic substrates. The strain's capability to survive in multiple environments suggests a role in nutrient cycling and possibly in bioremediation processes, where it may help to degrade pollutants.↵↵Given the ecological adaptability of Pseudomonas fluorescens strain 48D1, future studies could explore its potential applications in agricultural or environmental contexts, such as biocontrol agents or biofertilizers, particularly in systems that favor aerobic conditions. The strain’s heterotrophic metabolism underlines its significance in microbial interactions within various ecosystems, where it may contribute to the overall microbial community dynamics and health of the environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 MOBT00000000.1 Bac0014110 Salmonella enterica subsp. enterica serovar Newport strain "Salmonella enterica subsp. enterica serovar Newport strain is a Gram-negative bacterium characterized by its spirilla shape and the ability to exist both as single cells and in chains. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of its hosts, indicating its adaptation to a host-associated habitat. As a chemoorganotroph, it utilizes organic compounds as its energy source, further reflecting its ecological niche within host environments. ↵↵S. enterica Newport exhibits microaerophilic oxygen requirements, suggesting that it prefers environments with reduced oxygen levels, which can often be found in specific host tissues or during particular stages of infection. This trait may contribute to its survival and proliferation within the host, as it can exploit microenvironments that are less accessible to aerobic competitors.↵↵The ability of S. enterica Newport to form chains may also suggest a potential for enhanced communication or cooperation among cells, which could play a role in its adaptation mechanisms within host environments. This microbe's life cycle and interactions with hosts highlight the complex dynamics of microbial ecology, particularly in relation to host-associated microorganisms that adapt to specific niches for survival and growth." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 MODC00000000.1 Bac0014111 Alteromonas sp. V450 7_A1_NODE_60_length_4605_cov_56.439522 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. V450 1912139 MODU00000000.1 Bac0014112 Microbacterium sp. LCT-H2 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. LCT-H2 1914306 MODW00000000.1 Bac0014113 Acinetobacter sp. LCT-H3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. LCT-H3 1914307 MODX00000000.1 Bac0014114 Brucella cytisi strain IPA7.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella cytisi 407152 MOEC00000000.1 Bac0014115 Desulfurobacterium indicum strain K6013 "Desulfurobacterium indicum strain K6013 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This strain is characterized as an autotroph, lithotroph, and chemotroph, indicating its ability to utilize inorganic compounds as energy sources while fixing carbon for growth. ↵↵D. indicum strain K6013's adaptation to high temperatures and anaerobic environments suggests it may occupy niches such as deep-sea hydrothermal vents or other extreme habitats where organic matter is limited, and inorganic substrates are abundant. The metabolic versatility of this strain highlights its potential role in biogeochemical cycles, particularly in sulfur and carbon cycling. ↵↵Given its lithotrophic capabilities, D. indicum strain K6013 may contribute to the reduction of sulfate to sulfide, a process that can influence sulfur availability in its ecosystem. This functional trait positions the strain as a significant player in the microbial communities of anoxic environments, where it may help maintain the balance of elemental cycles crucial for ecosystem health." Pseudomonadati Aquificota Aquificia Desulfurobacteriales Desulfurobacteriaceae Desulfurobacterium Desulfurobacterium indicum Gram-negative rod anaerobic 45 autotroph; lithotroph; chemotroph thermophilic 1914305 MOEN00000000.1 Bac0014116 Escherichia coli strain 452 "Escherichia coli strain 452 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 452 has the metabolic flexibility to grow in both aerobic and anaerobic environments, enabling it to occupy various niches within its host. ↵↵The ability to exist in different oxygen conditions may contribute to its survival and functionality within the gastrointestinal tract, where oxygen levels can vary significantly. E. coli strains, in general, are known for their role in the intestinal microbiome, where they can participate in nutrient absorption and fermentation processes. Given the specific growth conditions and habitat of strain 452, it is plausible that this strain may play a role in maintaining the balance of microbial communities within its host, potentially influencing digestive health and nutrient metabolism. Further investigation into its specific interactions within the microbiome could yield insights into its ecological significance and functional contributions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MOFD00000000.1 Bac0014117 Escherichia coli strain 634 "Escherichia coli strain 634 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli strain 634 exhibits optimal growth at 37.0°C, a temperature that corresponds to the physiological conditions found within the mammalian host, indicating its adaptation to host-associated habitats.↵↵As a member of the Enterobacteriaceae family, E. coli is commonly found in the intestines of warm-blooded organisms, where it plays a critical role in the gut microbiota. The facultative anaerobic metabolism of this strain suggests that it can utilize oxygen when available but can also ferment substrates in its absence, contributing to its versatility and success as a colonizer in diverse environments.↵↵Notably, the ability of E. coli strain 634 to thrive in host-associated habitats may provide insights into its potential interactions within the gut microbiome. Its capacity to adapt to varying oxygen levels and temperatures could facilitate its survival and functional role in nutrient processing, possibly influencing host health and metabolic processes. Understanding the specific interactions and contributions of strain 634 within its ecological niche may enhance our knowledge of microbial dynamics in the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MOGU00000000.1 Bac0014118 Escherichia coli strain 559 "Escherichia coli strain 559 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli strain 559 has an optimal growth temperature of 37.0°C, which aligns with the normal body temperature of many mammalian hosts, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli strain 559 likely inhabits the gastrointestinal tracts of warm-blooded animals, where it can play a role in nutrient processing and microbial balance. Its facultative anaerobic nature enables it to utilize various metabolic pathways depending on the availability of oxygen, providing it with a versatile ecological niche. ↵↵The presence of this strain in host-associated habitats underscores its potential involvement in complex host-microbe interactions, which may influence digestive health and nutrient absorption. Further understanding of E. coli strain 559's specific roles within its ecological context could provide valuable insights into its contributions to host physiology and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MOIL00000000.1 Bac0014119 Escherichia coli strain 708 "Escherichia coli strain 708 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a characteristic feature of many E. coli strains. It exhibits optimal growth at 37.0°C, a temperature that coincides with the average body temperature of warm-blooded hosts, suggesting an association with host organisms.↵↵The habitat of E. coli strain 708 is noted to be host-associated, which underscores the bacterium's ecological role within the microbiota of its host. This association can contribute to various symbiotic relationships, potentially aiding in processes such as digestion or nutrient absorption. ↵↵The ability of E. coli strain 708 to survive under varying oxygen conditions may provide it with a competitive advantage in diverse environments within the host. Its rod shape and tendency to form pairs may also influence its interaction with host tissues and other microbial communities. Understanding these traits of E. coli strain 708 may offer insights into its functional role in the microbiome, as well as its adaptability in fluctuating conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MOJX00000000.1 Bac0014120 Escherichia coli strain 675 "Escherichia coli strain 675 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, suggesting a close association with host organisms. E. coli strain 675 is classified as a facultative anaerobe, allowing it to utilize oxygen when available but also to grow in anaerobic conditions, which is advantageous for survival in diverse environments, including the gastrointestinal tract of mammals.↵↵The habitat of E. coli strain 675 is primarily host-associated, indicating that it may play a role in the microbiota of its host or could be involved in various physiological processes. This association with hosts underscores the bacterium’s adaptability and potential interactions within microbial communities. Understanding the ecological dynamics of strain 675 can provide insight into its contributions to nutrient cycling and host health, as well as its potential responses to changes in the host environment. Given its characteristics, E. coli strain 675 may serve as an important model for studying microbial behavior in host-associated systems, facilitating further research into the roles of such microbes in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MOKA00000000.1 Bac0014121 Escherichia coli strain 726 "Escherichia coli strain 726 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli strain 726 exhibits optimal growth at 37.0°C, a temperature that coincides with the average body temperature of warm-blooded hosts, thereby suggesting its adaptation to a host-associated habitat.↵↵The Gram-negative cell wall structure of E. coli strain 726 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which is a signature feature of this bacterial group. As a facultative anaerobe, this strain is capable of utilizing oxygen when available but can also switch to anaerobic metabolic pathways in its absence, allowing it to colonize a variety of host environments.↵↵While specific pathogenic traits or ecological roles for strain 726 are not detailed, its association with host environments suggests a potential for interaction with the host's microbiota. Given its robust adaptability to different oxygen conditions and its prevalent presence in the human gut, E. coli strain 726 may play a role in nutrient processing and maintaining gut homeostasis, contributing to the complex dynamics of the microbial community within its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MOKZ00000000.1 Bac0014122 Exiguobacterium sp. KRL4 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. KRL4 1914536 MOLV00000000.1 Bac0014123 Bacillus thuringiensis serovar argentinensis strain BGSC 4BV1 "Bacillus thuringiensis serovar argentinensis strain BGSC 4BV1 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as a facultative anaerobe. This strain is primarily host-associated, indicating its presence in specific biological environments where it may interact with host organisms.↵↵As a member of the Bacillus genus, B. thuringiensis serovar argentinensis BGSC 4BV1 is known for its ability to produce crystalline proteins that exhibit insecticidal properties, contributing to its significance in agricultural and biotechnological applications. The facultative anaerobic nature of this strain suggests that it can thrive in both aerobic and anaerobic conditions, which may enhance its survival in varied environments, particularly in association with host organisms that may create fluctuating oxygen levels.↵↵The sporulating capability of this bacterium allows it to form resilient spores, enabling it to endure adverse environmental conditions and facilitating its transmission within host-associated habitats. This trait is particularly advantageous for its ecological role, as it can persist in environments where other organisms may struggle to survive.↵↵Overall, the unique combination of its Gram-positive nature, rod shape, and sporulation capability, along with its facultative anaerobic metabolism, positions Bacillus thuringiensis serovar argentinensis strain BGSC 4BV1 as an adaptable microbe within host-associated ecosystems, potentially influencing microbial community dynamics and interactions with host organisms." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 MOOO00000000.1 Bac0014124 Bacillus thuringiensis serovar iberica strain BGSC 4BW1 "Bacillus thuringiensis serovar iberica strain BGSC 4BW1 is a Gram-positive, rod-shaped bacterium known for its sporulating capabilities and facultative anaerobic metabolism. This strain is primarily associated with specific hosts, which suggests a specialized ecological niche that may influence its interactions within the environment. As a facultative anaerobe, B. thuringiensis serovar iberica strain BGSC 4BW1 can thrive in both aerobic and anaerobic conditions, providing it with metabolic flexibility that may enhance its survival and proliferation in variable habitats.↵↵The ability to form spores allows this microbe to withstand unfavorable environmental conditions, contributing to its persistence in host-associated environments. The ecological implications of this strain may extend to its role in biological control, as many Bacillus thuringiensis strains are utilized as biopesticides due to their production of insecticidal toxins. Understanding the specific interactions of B. thuringiensis serovar iberica strain BGSC 4BW1 with its host organisms could provide insights into its potential applications in sustainable agriculture and pest management strategies. Furthermore, the host-associated habitat indicates a complex relationship that could involve mutualistic or pathogenic interactions, underscoring the importance of this strain in its ecological context." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 MOOP00000000.1 Bac0014125 Bacillus thuringiensis serovar medellin strain T30001 "Bacillus thuringiensis serovar medellin strain T30001 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is categorized as a facultative anaerobe. This strain is associated with specific host environments, indicating a potential role in symbiotic or pathogenic interactions depending on the host organism. ↵↵As a member of the Bacillus genus, B. thuringiensis is recognized for its ability to produce insecticidal crystal proteins, which are used in biological pest control. The sporulating nature of this strain allows it to endure harsh environmental conditions, contributing to its survival and persistence in host-associated habitats. The facultative anaerobic metabolism suggests that B. thuringiensis serovar medellin strain T30001 can thrive in both aerobic and anaerobic conditions, providing it with a versatile ecological niche.↵↵Given its association with hosts and ability to sporulate, this strain may play a significant role in the microbial dynamics of its environment, potentially influencing host health or contributing to nutrient cycling. Further investigation into its specific interactions within host organisms could illuminate its ecological significance and potential applications in biocontrol strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 MOOV00000000.1 Bac0014126 Streptococcus sp. 'caviae' strain Cavy grass 6 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. 'caviae' 1915004 MOWR00000000.1 Bac0014127 Flavobacterium sp. MedPE-SWcel Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. MedPE-SWcel 1860086 MPCW00000000.1 Bac0014128 Alphaproteobacteria bacterium MedPE-SWcel Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MedPE-SWcel 1860092 MPDC00000000.1 Bac0014129 Bacteroidetes bacterium MedPE-SWsnd-G1 Pseudomonadati Bacteroidota Bacteroidetes bacterium MedPE-SWsnd-G1 1860094 MPDD00000000.1 Bac0014130 Bacteroidetes bacterium MedPE-SWsnd-G2 Pseudomonadati Bacteroidota Bacteroidetes bacterium MedPE-SWsnd-G2 1860095 MPDE00000000.1 Bac0014131 Campylobacter coli strain VA38 "Campylobacter coli strain VA38 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement. This organism is part of the Campylobacter genus, which is known for its spiral-shaped morphology and motility, although specific morphological details for strain VA38 are not provided. The microaerophilic nature of C. coli indicates that it thrives in environments with reduced oxygen levels, typically ranging from 5% to 10%, which is critical for its metabolic processes.↵↵As a member of the Campylobacter genus, C. coli is often associated with various animal hosts, including livestock, and plays a role in the gastrointestinal microbiota of these animals. While the strain's specific ecological niche has not been detailed, the general behavior of Campylobacter species suggests it may be involved in nutrient cycling within its habitat. The adaptation to microaerophilic conditions might confer a competitive advantage within the gastrointestinal tract, where oxygen levels are typically low and fluctuating.↵↵Understanding the traits of Campylobacter coli strain VA38 can provide insights into its potential roles in microbial communities and its interactions with host organisms. The strain's adaptability to microaerophilic environments highlights its potential involvement in the maintenance of gut homeostasis and the dynamics of microbial ecosystems in specific habitats. Further investigations into its ecological role could elucidate the functional contributions of this strain to microbial community structures." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 MPIW00000000.1 Bac0014132 Campylobacter coli strain VA46 "Campylobacter coli strain VA46 is a Gram-negative bacterium characterized as a microaerophile, indicating its requirement for reduced oxygen levels for optimal growth. This strain is part of the Campylobacter genus, which is known for its distinctive spiral shape and motility conferred by a single polar flagellum. The microaerophilic nature of C. coli suggests it thrives in environments where oxygen concentration is lower than that of the atmosphere, which may include gastrointestinal tracts of animals or certain environmental niches.↵↵As a member of the Campylobacter species, C. coli is often associated with poultry and other livestock, where it may play a role in the microbiota of these hosts. The ability to grow in microaerobic conditions implies that it may possess specialized metabolic pathways that allow it to efficiently utilize substrates available in such environments while avoiding oxidative stress. ↵↵The unique adaptation of C. coli strain VA46 to microaerophilic conditions highlights its potential ecological role in nutrient cycling within animal hosts and possibly in the broader ecosystem, where it may interact with other microbial communities. Understanding these traits is crucial for comprehending the ecological dynamics in which C. coli operates, particularly in relation to its habitat and interactions with other microorganisms." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 MPIX00000000.1 Bac0014133 Pseudomonas versuta strain A4R1.5 79 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas versuta 1788301 MPJC00000000.1 Bac0014134 Dubosiella newyorkensis strain NYU-BL-A4 "Dubosiella newyorkensis strain NYU-BL-A4 is a Gram-positive, rod-shaped bacterium with an anaerobic metabolic requirement and an optimal growth temperature of 37.0°C. This strain is characterized by its non-spore-forming nature, which indicates a reliance on stable environmental conditions for survival and proliferation. The anaerobic lifestyle suggests that Dubosiella newyorkensis may thrive in environments devoid of oxygen, potentially occupying niches in diverse habitats such as the human gut or other anoxic environments where competition with aerobic organisms is limited.↵↵The physiological traits of strain NYU-BL-A4 imply a specialized role in its environment, likely participating in the degradation of organic matter or contributing to the microbial community's metabolic processes. Its optimal growth temperature aligns with that of many mesophilic microorganisms, indicating a preference for the warm environments typically found in mammalian hosts. Understanding the specific metabolic pathways and ecological roles of Dubosiella newyorkensis could provide insights into its interactions within microbial communities and its potential contributions to nutrient cycling in anaerobic ecosystems." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Dubosiella Dubosiella newyorkensis Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 1862672 MPKA00000000.1 Bac0014135 Marinobacter nauticus strain STW2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter nauticus 2743 MPKY00000000.1 Bac0014136 Pseudomonas koreensis strain CI12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 MPLD00000000.1 Bac0014137 Leuconostoc lactis strain LN24 "Leuconostoc lactis strain LN24 is a Gram-positive, nonsporulating coccus that thrives in various habitats, including dairy products, fermented foods, and vegetables. This strain is facultatively anaerobic, allowing it to adapt to varying oxygen levels in its environments. Commonly found in cheese, kimchi, and wine, L. lactis strain LN24 plays a significant role in the fermentation processes of these food products, contributing to their flavor and texture profiles.↵↵This microbe is notable for its presence in both dairy and non-dairy environments, such as meat and vegetables, indicating its versatility in food ecosystems. The ability to survive and proliferate in diverse substrates suggests that L. lactis strain LN24 may have evolved mechanisms for utilizing different carbohydrate sources, which is characteristic of many lactic acid bacteria. ↵↵Given its widespread occurrence in fermented foods, L. lactis strain LN24 may be essential in the establishment of microbial communities that enhance food preservation and safety through fermentation. This strain exemplifies the complex interactions between microorganisms and food matrices, highlighting its potential contribution to the development of unique flavors and preservation methods in traditional food practices around the world." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc lactis Positive Coccus Facultative anaerobe cheese; dairy; dairy products; fermented foods; food products; kimchi; meat; milk; Milk; vegetables; whey; wine Nonsporulating 1246 MPLN00000000.1 Bac0014138 Mycolicibacterium diernhoferi strain Bard Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium diernhoferi 1801 MPNS00000000.1 Bac0014139 Solemya velum gill symbiont voucher Malacology 385459 Pseudomonadati Pseudomonadota Gammaproteobacteria Solemya velum gill symbiont 2340 MPNX00000000.1 Bac0014140 Elizabethkingia meningoseptica strain 61421 PRCM "Elizabethkingia meningoseptica strain 61421 PRCM is a Gram-negative, aerobic bacterium predominantly found in both natural and hospital environments. This organism is a member of the genus Elizabethkingia, which is known for its resilience and ability to thrive in diverse ecological niches. The presence of E. meningoseptica in hospital settings indicates its potential association with healthcare environments, where it can persist in various reservoirs.↵↵The strain exhibits characteristics typical of aerobic bacteria, requiring oxygen for its metabolic processes. This trait may influence its survival and competitive dynamics within the microbiota of both clinical and environmental settings. The adaptability of E. meningoseptica to different habitats suggests a versatile metabolism that may allow it to utilize a range of organic compounds for growth.↵↵Notably, the dual existence of E. meningoseptica in both natural and hospital environments highlights its potential role in the microbial ecology of these locations, as well as the importance of monitoring its presence due to its association with opportunistic infections. Understanding the environmental resilience and ecological interactions of Elizabethkingia meningoseptica strain 61421 PRCM may provide insights into the management of microbial populations in healthcare settings and the natural environments they inhabit." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia meningoseptica negative aerobic natural and hospital environments 238 MPOG00000000.1 Bac0014141 Streptomyces phaeoluteigriseus strain DSM 41896 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces phaeoluteigriseus 114686 MPOH00000000.2 Bac0014142 Bacillus cereus strain NZAS03 "Bacillus cereus strain NZAS03 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain exhibits an optimal growth temperature of 25.0°C, suggesting a preference for moderate environmental conditions. The ability to inhabit multiple habitats indicates its adaptability and potential ecological versatility, allowing it to survive in diverse environments. ↵↵As a member of the Bacillus genus, B. cereus strains are often found in soil and food products, where they can play roles in nutrient cycling and may contribute to the microbiome of various ecosystems. The aerobic nature of strain NZAS03 implies that it relies on oxygen for growth, which is consistent with its potential presence in well-aerated environments. ↵↵This combination of traits highlights the ecological role of Bacillus cereus strain NZAS03 in nutrient recycling and its adaptability to various aerobic environments. Understanding the specific habitats and conditions under which this strain thrives could provide insights into its contributions to microbial communities and the broader ecological implications of its presence." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 MPON00000000.1 Bac0014143 Sphingomonas jeddahensis strain G39 "Sphingomonas jeddahensis strain G39 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 29.0 °C, indicating a preference for moderate thermal conditions. The Gram-negative nature of S. jeddahensis is characteristic of its cell wall structure, which is composed of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵Given its aerobic requirement, S. jeddahensis likely plays a role in biogeochemical cycles, particularly in environments where oxygen is readily available. The optimal growth temperature suggests that this microbe may be particularly adapted to mesophilic conditions, potentially influencing its ecological niche in specific habitats. ↵↵The traits of Sphingomonas jeddahensis strain G39 may facilitate its use in biotechnological applications, particularly in the biodegradation of environmental pollutants, as members of the Sphingomonas genus are known for their metabolic versatility. This strain's adaptation to specific thermal and aerobic conditions highlights its potential role in microbial communities where temperature and oxygen levels fluctuate, contributing to the overall dynamics of microbial interactions and nutrient cycling in those environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas jeddahensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 1915074 MPSB00000000.1 Bac0014144 Paenibacillus odorifer strain FSL H7-0710 "Paenibacillus odorifer strain FSL H7-0710 is a Gram-positive, rod-shaped bacterium that exhibits a characteristic chain arrangement and demonstrates the ability to sporulate. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, which may be sourced from its diverse habitats. Paenibacillus odorifer strain FSL H7-0710 thrives optimally at a temperature of 30.0°C and is categorized as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments.↵↵The ability to sporulate suggests that this strain has evolved mechanisms for survival in fluctuating environmental conditions, which may confer resilience to stressors such as nutrient limitation or desiccation. This trait, combined with its heterotrophic lifestyle, allows P. odorifer strain FSL H7-0710 to occupy various ecological niches where organic matter is available. Its facultative anaerobic nature further enhances its adaptability, enabling it to exploit diverse substrates under varying oxygen conditions.↵↵Given these characteristics, Paenibacillus odorifer strain FSL H7-0710 likely plays a significant role in nutrient cycling within its ecosystems, contributing to the decomposition of organic material and possibly influencing microbial community dynamics through its metabolic activities. Such traits highlight the ecological versatility of this strain and its potential importance in sustaining microbial diversity in various habitats." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus odorifer Positive Rod Yes 1 Facultative Anaerobe 30 Chemoheterotroph Mesophilic Multiple Chains Sporulating 189426 MPTC00000000.1 Bac0014145 Pectobacterium actinidiae strain ICMP 19972 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium actinidiae 1507808 MPUJ00000000.1 Bac0014146 Bradyrhizobium brasilense strain UFLA03-321 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium brasilense 1419277 MPVQ00000000.1 Bac0014147 Rhizobium sp. P44RR-XXIV Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. P44RR-XXIV 1921145 MPVZ00000000.2 Bac0014148 Thioclava sp. F28-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava sp. F28-4 1915315 MPZQ00000000.1 Bac0014149 Anoxybacillus kestanbolensis strain K1 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus kestanbolensis 227476 MQAD00000000.1 Bac0014150 Geobacillus proteiniphilus strain 1017 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus proteiniphilus 860353 MQMG00000000.1 Bac0014151 Serratia proteamaculans strain B-41156 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia proteamaculans 28151 MQMS00000000.1 Bac0014152 Aureitalea marina strain NBRC 107741 "Aureitalea marina strain NBRC 107741 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 25.0°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on environmental stability for survival rather than on spore-based resilience. ↵↵The Gram-negative classification indicates that Aureitalea marina possesses an outer membrane containing lipopolysaccharides, a feature that may influence its interactions with other microorganisms and its response to various environmental stressors. The rod shape of the bacterium is typical for many aerobic bacteria, potentially facilitating efficient nutrient uptake and motility in its aquatic habitat.↵↵Given its optimal growth temperature, Aureitalea marina is likely adapted to moderate marine environments, which can affect its metabolic activities and ecological roles. This strain may play a role in nutrient cycling within its ecosystem, contributing to the degradation of organic matter and influencing microbial community dynamics. The specific ecological interactions and metabolic pathways of Aureitalea marina remain to be fully elucidated, but its aerobic nature suggests it may engage in processes such as aerobic respiration, utilizing oxygen as a terminal electron acceptor. This adaptation may position Aureitalea marina as an important player in the biogeochemical processes of marine ecosystems, particularly in areas with significant organic input." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aureitalea Aureitalea marina Gram-negative rod aerobic 25 mesophilic non-spore-forming 930804 MQUB00000000.1 Bac0014153 Nonlabens agnitus strain JCM 17109 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens agnitus 870484 MQUC00000000.1 Bac0014154 Sphingomonas sp. Sph1(2015) Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. Sph1(2015) 1628084 MQUI00000000.1 Bac0014155 Pseudomonas moraviensis strain UCD-KL30 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas moraviensis 321662 MQUK00000000.1 Bac0014156 Streptomyces sp. IMTB 2501 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. IMTB 2501 1776340 MQUS00000000.1 Bac0014157 Bowdeniella nasicola strain DSM 19116 "Bowdeniella nasicola strain DSM 19116 is a Gram-positive, non-spore-forming rod-shaped bacterium. This microbe is characterized by its distinct cellular morphology, which is typical of many members within its phylogenetic group. As a Gram-positive organism, Bowdeniella nasicola possesses a thick peptidoglycan layer in its cell wall, which is indicative of its structural features and may influence its susceptibility to certain antibiotics.↵↵Despite the absence of sporulation, the non-spore-forming nature of this strain suggests that it may rely on alternative survival strategies in response to environmental stresses. This trait might reflect a life cycle adapted to its ecological niche, potentially allowing for rapid growth and reproduction under favorable conditions.↵↵Bowdeniella nasicola's morphology and Gram-positive characteristics are consistent with a range of ecological roles, particularly in environments where organic matter is present. While specific ecological interactions have not been detailed, the presence of rod-shaped, non-spore-forming bacteria in various habitats often indicates a role in the decomposition process or nutrient cycling. Understanding the ecological implications of Bowdeniella nasicola's traits could provide insights into its function in microbial communities, particularly in the degradation of organic substrates or in interactions with other microorganisms." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Bowdeniella Bowdeniella nasicola Gram-positive rod non-spore-forming 208480 MQVR00000000.1 Bac0014158 Buchananella hordeovulneris strain DSM 20732 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Buchananella Buchananella hordeovulneris 52770 MQVS00000000.1 Bac0014159 Tenacibaculum sp. SG-28 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum sp. SG-28 754426 MQVY00000000.1 Bac0014160 Rubritalea profundi strain SAORIC-165 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Rubritaleaceae Rubritalea Rubritalea profundi 1658618 MQWA00000000.1 Bac0014161 Salinibacter sp. 10B Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter sp. 10B 1923971 MQWC00000000.1 Bac0014162 Bacillus swezeyi strain NRRL B-41294 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus swezeyi 1925020 MRBK00000000.1 Bac0014163 Bacillus haynesii strain NRRL B-41327 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus haynesii 1925021 MRBL00000000.1 Bac0014164 Nostoc calcicola FACHB-389 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc calcicola 1357508 MRBZ00000000.1 Bac0014165 Fischerella major NIES-592 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella major 210994 MRCA00000000.1 Bac0014166 Hydrococcus rivularis NIES-593 Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Hydrococcaceae Hydrococcus Hydrococcus rivularis 1921803 MRCB00000000.1 Bac0014167 Phormidium tenue NIES-30 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Phormidium Phormidium tenue 549789 MRCG00000000.1 Bac0014168 Tersicoccus phoenicis strain DSM 30849 "Tersicoccus phoenicis strain DSM 30849 is a Gram-positive, spherical bacterium that exhibits aerobic metabolic characteristics and is non-spore-forming. This strain thrives optimally at a temperature of 29.0 °C, indicating a preference for mesophilic conditions, which may suggest its adaptation to specific niches within environments that maintain moderate temperatures. ↵↵The spherical morphology of Tersicoccus phoenicis is characteristic of many cocci, which can influence its ecological interactions and nutrient acquisition strategies. As an aerobic organism, it relies on oxygen for its metabolic processes, potentially positioning it within environments that are rich in oxygen availability.↵↵The absence of sporulation in this strain may imply a reliance on other survival mechanisms under unfavorable conditions, as it does not produce spores to endure environmental stressors. This trait could reflect its ecological niche, where constant conditions may be present, or it may indicate a competitive advantage in environments where rapid growth is favored over resilience to extreme conditions.↵↵Overall, the traits of Tersicoccus phoenicis strain DSM 30849 suggest its potential role in specific aerobic ecosystems, possibly contributing to nutrient cycling or interacting with other microbial communities in its habitat. Further investigation into its ecological functions could provide insights into its role within the microbiome of its native environment." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Tersicoccus Tersicoccus phoenicis Gram-positive sphere non-motile aerobic 29 mesophilic non-spore-forming 554083 MRDE00000000.1 Bac0014169 Agrobacterium pusense strain NRCPB10 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium pusense 648995 MRDJ00000000.1 Bac0014170 Paenibacillus sp. FSL A5-0031 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL A5-0031 1920420 MRTD00000000.1 Bac0014171 Paenibacillus sp. FSL H8-0548 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL H8-0548 1920422 MRTK00000000.1 Bac0014172 Paenibacillus sp. FSL H8-0259 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL H8-0259 1920423 MRTL00000000.1 Bac0014173 Paenibacillus sp. FSL R5-0490 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R5-0490 1920424 MRTQ00000000.1 Bac0014174 Paenibacillus macerans strain FSL R5-0527 "Paenibacillus macerans strain FSL R5-0527 is a rod-shaped bacterium characterized by its distinct morphological and physiological traits. This strain, belonging to the genus Paenibacillus, is notable for its potential roles in various biological processes, particularly in the degradation of organic materials. The rod shape of P. macerans is a common trait among many members of the Bacilli class, which can influence its motility and interaction with the surrounding environment.↵↵While specific metabolic capabilities and ecological roles of strain FSL R5-0527 are not provided, members of the Paenibacillus genus are generally known for their ability to thrive in diverse habitats, often contributing to soil health and nutrient cycling. This rod-shaped bacterium may play a significant role in the decomposition of complex organic compounds, thereby facilitating nutrient availability for other organisms within its ecosystem.↵↵The ecological implications of Paenibacillus macerans strain FSL R5-0527 may extend to its interactions with plant roots or other soil microorganisms, potentially influencing plant health and growth. Understanding the traits of this strain can provide insights into its potential applications in agriculture and environmental management, particularly in enhancing soil quality and promoting sustainable agricultural practices." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus macerans Rod 44252 MRTR00000000.1 Bac0014175 Paenibacillus sp. FSL R7-0333 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R7-0333 1926587 MRTW00000000.1 Bac0014176 Frankia sp. KB5 Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. KB5 683318 MRUJ00000000.1 Bac0014177 Izhakiella australiensis strain D4N98 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Izhakiella Izhakiella australiensis 1926881 MRUL00000000.1 Bac0014178 Rouxiella badensis strain DSM 100043 "Rouxiella badensis strain DSM 100043 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This versatile metabolic capability suggests that R. badensis can adapt to varying oxygen levels, potentially occupying diverse ecological niches. The strain's rod shape is characteristic of many members within its genus, contributing to its overall cellular morphology.↵↵The facultative nature of its oxygen requirement implies that R. badensis may play a significant role in biogeochemical cycles, particularly in environments where oxygen availability fluctuates. Such adaptability could enhance its survival in complex ecosystems, such as soil or sediment, where it may contribute to the decomposition of organic matter or interact with other microbial communities.↵↵Further investigation into the ecological roles and metabolic pathways of Rouxiella badensis could provide insights into its function in nutrient cycling and its interactions within microbial consortia. Understanding these dynamics could reveal its potential contributions to ecosystem health and stability, emphasizing the importance of this strain in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rouxiella Rouxiella badensis Gram-negative rod facultative aerobe/anaerobe 1646377 MRWE00000000.1 Bac0014179 Bacillus sp. MB366 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MB366 1663555 MRWR00000000.1 Bac0014180 Wolbachia pipientis wAus Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia pipientis 2049495 MRWX00000000.1 Bac0014181 Klebsiella michiganensis strain CAV1755 unitig_7 "Klebsiella michiganensis strain CAV1755, characterized as a Gram-negative, rod-shaped bacterium, exhibits notable traits that define its ecological and metabolic capabilities. This strain is nonsporulating and demonstrates a chemoheterotrophic metabolism, indicating its reliance on organic compounds as both a carbon and energy source. Optimal growth occurs at 37.0 °C, which aligns with the temperature typical of mammalian hosts, suggesting its adaptability to environments that mimic host conditions.↵↵Klebsiella michiganensis strain CAV1755 is categorized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This versatility may facilitate its survival in diverse habitats, including those influenced by varying oxygen levels. The strain's ability to occupy multiple habitats underscores its ecological versatility, potentially allowing it to exploit a range of niches.↵↵This adaptability not only illustrates the physiological resilience of Klebsiella michiganensis strain CAV1755 but also hints at its possible role in nutrient cycling within its environments. By utilizing various organic substrates, it may contribute to the degradation of complex organic materials, thereby influencing microbial community dynamics and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 MRWY00000000.1 Bac0014182 Psychrobacter sp. Rd 27.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. Rd 27.2 1926479 MRYB00000000.1 Bac0014183 Hahella sp. CCB-MM4 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Hahellaceae Hahella Hahella sp. CCB-MM4 1926491 MRYI00000000.1 Bac0014184 Cronobacter turicensis strain MOD1-Sh41s Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter turicensis 413502 MSAG00000000.1 Bac0014185 Aliivibrio sifiae strain NBRC 105001 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio sifiae 566293 MSCP00000000.1 Bac0014186 Pseudomonas chlororaphis strain PCL1601 cnt25 "Pseudomonas chlororaphis strain PCL1601 cnt25 is a Gram-negative, rod-shaped bacterium that primarily inhabits the nodules of Chamaecytisus albus, as well as the rhizosphere and root nodules of various plants. This strain contributes to the complex microbial community associated with plant roots, potentially influencing plant health and growth through its interactions in these specialized habitats.↵↵The rod shape of P. chlororaphis strain PCL1601 cnt25 is characteristic of the Pseudomonas genus, which is known for its metabolic versatility and ability to thrive in diverse environments. The specific association of this strain with root nodules suggests a potential role in plant-microbe interactions, which may include promoting nutrient availability or enhancing plant stress resistance. ↵↵Additionally, the presence of Pseudomonas species in the rhizosphere is often linked to beneficial effects on plant development, such as the production of phytohormones or the suppression of plant pathogens. Understanding the precise mechanisms by which P. chlororaphis strain PCL1601 cnt25 interacts with its plant hosts and neighboring microbial communities may provide insights into its ecological role and potential applications in agricultural practices. This highlights the importance of studying such microorganisms in the context of sustainable agriculture and soil health management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis negative Rod nodules of Chamaecytisus albus; rhizosphere; root nodules 587753 MSCT00000000.1 Bac0014187 Salinicola socius strain SMB35 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Salinicola Salinicola socius 404433 MSDO00000000.1 Bac0014188 Chromohalobacter japonicus strain SMB17 "Chromohalobacter japonicus strain SMB17 is a Gram-negative, rod-shaped bacterium that is strictly aerobic and does not form spores. This strain thrives optimally at a temperature of approximately 29.0°C, which suggests a preference for moderately warm environments, potentially similar to those found in coastal or saline habitats where this species may be naturally occurring.↵↵As a member of the genus Chromohalobacter, strain SMB17 is likely to exhibit halotolerance, which allows it to survive in saline conditions, although specific salinity preferences were not provided. The absence of sporulation indicates that this strain may rely on other survival mechanisms in adverse conditions, such as metabolic adjustments or the formation of biofilms.↵↵Understanding the physiological traits of Chromohalobacter japonicus strain SMB17 can contribute to insights into its potential applications in biotechnology, especially in processes involving saline environments. The adaptability of this strain to aerobic conditions at a moderate temperature may facilitate its role in biogeochemical cycles in coastal marine ecosystems, where oxygen levels and temperature vary. Further research on this strain could elucidate its specific ecological roles and interactions within its habitat, enhancing our knowledge of microbial diversity in saline environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter japonicus Gram-negative rod aerobic 29 mesophilic non-spore-forming 42054 MSDQ00000000.1 Bac0014189 Domibacillus antri strain XD80 "Domibacillus antri strain XD80 is a Gram-positive, rod-shaped bacterium that exhibits an aerobic metabolism. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic conditions. As a member of the bacterial domain, D. antri strain XD80 is likely to play a role in specific ecological niches where aerobic processes are prevalent.↵↵The Gram-positive nature of this bacterium suggests the presence of a thick peptidoglycan layer in its cell wall, which can confer specific advantages in terms of resistance to certain environmental stresses. Its rod shape may facilitate mobility and colonization in various habitats, potentially allowing it to interact effectively with other microbial communities.↵↵The optimal growth temperature of 29.0°C aligns with environments that are often found in temperate zones, where organisms are adapted to moderate thermal conditions. This trait may also suggest an ecological association with environments such as soil or decaying organic matter, where aerobic decomposition processes occur.↵↵Overall, the characteristics of Domibacillus antri strain XD80 reflect its potential role in maintaining microbial diversity and function in aerobic ecosystems. Its adaptation to specific temperature and oxygen conditions highlights its significance in the microbial ecology of environments where oxygen is readily available, contributing to nutrient cycling and organic matter decomposition." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Domibacillus Domibacillus antri Gram-positive rod aerobic 29 mesophilic 1714264 MSDU00000000.1 Bac0014190 Burkholderia sp. SRS-W-2-2016 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. SRS-W-2-2016 1926878 MSDV00000000.1 Bac0014191 Enterococcus faecium strain IHC3 "Enterococcus faecium strain IHC3 is a Gram-positive cocci that exhibits facultative anaerobic respiration. This strain has been isolated from fermented mare milk, suggesting its adaptation to a specific niche within dairy fermentation processes. Enterococcus faecium is commonly recognized for its role in food fermentation and probiotic applications, and the IHC3 strain's habitat indicates its potential contribution to the complex microbial community of fermented dairy products.↵↵The ability to thrive in both aerobic and anaerobic environments enables E. faecium strain IHC3 to participate actively in fermentation processes, where fluctuating oxygen levels can occur. This versatility may enhance its survival and functional roles in fermented mare milk, possibly influencing flavor development and preservation of the product. ↵↵Additionally, the presence of E. faecium in fermented mare milk could provide insights into the microbial dynamics within this niche, shedding light on the interactions between lactic acid bacteria and other microbial populations. Further investigation into the metabolic pathways and interactions of strain IHC3 could reveal its specific contributions to the fermentation process and the overall quality of mare milk products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 MSHT00000000.1 Bac0014192 Enterococcus faecium strain IHC5 "Enterococcus faecium strain IHC5 is a Gram-positive coccus that demonstrates facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is notably isolated from fermented mare milk, suggesting a specific ecological niche where it may play a role in the fermentation process of this particular dairy product. ↵↵As a member of the Enterococcus genus, E. faecium is characterized by its resilience and adaptability, traits often associated with microorganisms found in fermented foods. The cocci shape of this strain contributes to its ability to form clusters or chains, which is typical for many Enterococcus species. The fermentation of mare milk not only provides a unique habitat for E. faecium IHC5 but may also influence its metabolic pathways and growth dynamics, potentially impacting the flavor and preservation of the milk.↵↵This strain's association with fermented mare milk highlights the importance of Enterococcus species in dairy fermentation processes, where they may contribute to the development of specific sensory attributes and the overall microbiota of the product. Moreover, the habitat of IHC5 underscores the potential for beneficial interactions within complex microbial communities found in traditional fermentation systems, which can be integral to both food science and microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 MSHV00000000.1 Bac0014193 Enterococcus faecium strain IHC8 "Enterococcus faecium strain IHC8 is a Gram-positive cocci that exhibits facultative anaerobic metabolism, contributing to its survival in various environments, including its specific habitat in fermented mare milk. This strain belongs to the Enterococcus genus, which is known for its resilience and adaptability in diverse ecological niches. The ability of E. faecium IHC8 to thrive in fermented mare milk suggests a role in dairy fermentation processes, potentially influencing the flavor, texture, and safety of the final product through its metabolic activities.↵↵Facultative anaerobes like E. faecium strain IHC8 can grow in both the presence and absence of oxygen, allowing them to occupy ecological niches where oxygen availability fluctuates. This adaptability may also confer advantages in competing with other microbial species in fermented environments. Moreover, the specific association with mare milk fermentation could indicate a specialized metabolic pathway that allows E. faecium IHC8 to utilize the unique substrates present in this medium. Such traits highlight the potential for this strain to contribute to the microbial diversity and functional complexity of fermented dairy products. Understanding the specific metabolic capabilities and ecological roles of E. faecium IHC8 may offer insights into its application in food microbiology and fermentation science, particularly in enhancing the quality and safety of fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 MSHY00000000.1 Bac0014194 Actinophytocola xanthii strain 11-183 "Actinophytocola xanthii strain 11-183 is a Gram-positive, aerobic bacterium that demonstrates the ability to form spores, which is indicative of its resilience in various environmental conditions. This strain exhibits optimal growth at a temperature of 29.0 degrees Celsius, suggesting a preference for moderate thermal environments. The Gram-positive nature of this microbe typically reflects a thick peptidoglycan layer in its cell wall, which is a characteristic feature of this group that may contribute to its survival strategies.↵↵The spore-forming capability of A. xanthii strain 11-183 allows it to endure adverse conditions, facilitating its persistence in habitats where nutrients may be scarce or environmental stresses are prevalent. The aerobic requirement indicates that this organism relies on oxygen for its metabolic processes, which may influence its distribution and ecological interactions within its environment.↵↵In sum, the traits of Actinophytocola xanthii strain 11-183, particularly its spore-forming ability and aerobic metabolism, suggest that it may play a significant role in soil ecosystems, potentially contributing to nutrient cycling and the degradation of organic material. Further research could elucidate its specific ecological contributions and interactions with other soil-dwelling microorganisms." Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinophytocola Actinophytocola xanthii Gram-positive non-motile aerobic 29 mesophilic spore-forming 1912961 MSIE00000000.1 Bac0014195 Actinophytocola xinjiangensis strain CGMCC 4.4663 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinophytocola Actinophytocola xinjiangensis 485602 MSIF00000000.1 Bac0014196 Actinomyces oris strain CCUG 33920 "Actinomyces oris strain CCUG 33920 is a Gram-positive bacterium classified within the genus Actinomyces, exhibiting a facultative anaerobic metabolic capability. This strain has been isolated from specific habitats, notably the submucosal sulcus and vaginal mucosa, which suggests a potential role in the normal microbiota of these environments. ↵↵As a facultative anaerobe, A. oris strain CCUG 33920 can thrive in both aerobic and anaerobic conditions, indicating its adaptability to varying oxygen levels within its natural habitats. The presence of this microorganism in the vaginal mucosa highlights its potential involvement in maintaining a balanced microbial ecosystem, which is crucial for vaginal health. The submucosal sulcus may serve as a niche where this bacterium could play a role in interactions with other microbial species and host tissues.↵↵Overall, the ecological significance of A. oris strain CCUG 33920 in these specific niches may contribute to our understanding of the complex dynamics of microbial communities and their influence on host physiology, particularly within mucosal surfaces. Further studies could elucidate the precise roles of this strain in microbial homeostasis and its interactions with the host immune system." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces oris Positive Facultative anaerobe submucosal sulcus; vaginal mucosa 544580 MSKJ00000000.1 Bac0014197 Actinomyces oris strain R21091 "Actinomyces oris strain R21091 is a Gram-positive bacterium that thrives in submucosal sulci and the vaginal mucosa, characterized by its facultative anaerobic metabolism. This strain is part of the diverse Actinomyces genus, which is known for its role in human-associated microbiomes. Being Gram-positive, A. oris possesses a thick peptidoglycan layer in its cell wall, which is typical of this group of bacteria and contributes to its structural integrity.↵↵The habitat of A. oris strain R21091 in submucosal regions suggests a specific adaptation to mucosal environments, potentially facilitating interactions with host tissues and other microbial communities. Its presence in the vaginal mucosa indicates a possible involvement in the local microbiome, which is crucial for maintaining homeostasis and overall health. The facultative anaerobic nature of this strain allows it to survive in both aerobic and anaerobic conditions, providing it with a versatile ecological niche within the human body.↵↵Considering the habitats and metabolic characteristics of A. oris strain R21091, this microbe may play a role in the balance of the microbiota in mucosal environments, which could influence local immune responses and microbial competition. Further studies could elucidate its specific interactions within these ecosystems and its potential contributions to microbial diversity and function in human health." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces oris Positive Facultative anaerobe submucosal sulcus; vaginal mucosa 544580 MSKK00000000.1 Bac0014198 Actinomyces oris strain MMRCO6-1 "Actinomyces oris strain MMRCO6-1 is a Gram-positive bacterium that exhibits facultative anaerobic growth, making it adaptable to varying oxygen levels in its environment. This strain is primarily found in submucosal sulci and the vaginal mucosa, indicating a specific niche within the human microbiome where it may play a role in maintaining local microbial balance. ↵↵As a member of the Actinomyces genus, A. oris strain MMRCO6-1 is likely involved in the fermentation of carbohydrates, contributing to the metabolic processes within its habitat. The presence of this strain in the vaginal mucosa suggests it could be part of a complex interplay of microbial communities that are essential for maintaining the health and homeostasis of the mucosal surfaces. ↵↵Understanding the traits of A. oris strain MMRCO6-1 may provide insights into its potential functions in the microbiome, such as its role in protecting against pathogenic organisms or contributing to the overall metabolic activities that support the host's health. Further research into the interactions of this strain within its ecological context could illuminate its contributions to mucosal immunology and microbial ecology." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces oris Positive Facultative anaerobe submucosal sulcus; vaginal mucosa 544580 MSKM00000000.1 Bac0014199 Actinomyces oris strain WE8B-23 "Actinomyces oris strain WE8B-23 is a Gram-positive, facultative anaerobic bacterium predominantly found in submucosal sulci and vaginal mucosa. This strain exhibits the characteristic filamentous morphology associated with the Actinomyces genus, which is known for its role in various ecological niches within the human body. The facultative anaerobic nature of A. oris allows it to thrive in both aerobic and anaerobic environments, suggesting a versatile metabolic capacity that enables it to adapt to different physiological conditions.↵↵The presence of A. oris in the vaginal mucosa indicates potential involvement in the complex microbial community of this environment, possibly contributing to maintaining homeostasis and preventing the colonization of pathogenic organisms. Its habitat within the submucosal sulcus highlights its potential role in oral and systemic health, as the oral cavity is a critical entry point for various microorganisms into the human body.↵↵Given its specific environmental niches, A. oris strain WE8B-23 may play a role in the interactions between host immune responses and the microbiota, possibly influencing the local microbiome balance. Further research on this strain could provide insights into its functional contributions to microbial ecology and host health." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces oris Positive Facultative anaerobe submucosal sulcus; vaginal mucosa 544580 MSKS00000000.1 Bac0014200 Actinomyces naeslundii strain W8-2-3 "Actinomyces naeslundii strain W8-2-3 is a Gram-positive, facultative anaerobic bacterium that predominantly inhabits the submucosal sulcus of the oral cavity. This strain is part of a genus known for its role in dental plaque formation and its association with oral health. The Gram-positive nature of A. naeslundii indicates a thick peptidoglycan layer in its cell wall, which is characteristic of bacteria in this group, contributing to its structural integrity and potential resilience in the oral environment.↵↵As a facultative anaerobe, strain W8-2-3 has the metabolic versatility to thrive in both aerobic and anaerobic conditions, allowing it to adapt to the varying oxygen levels present in the submucosal sulcus. This adaptability is crucial for its survival and proliferation in the complex microbial ecosystem of the human mouth, where oxygen availability can fluctuate.↵↵The presence of A. naeslundii in the oral microbiota may play a significant role in maintaining a balanced microbial community and potentially influencing the health of the surrounding tissues. Its location in the submucosal sulcus, a region often exposed to various environmental stressors, suggests that it may contribute to the protective mechanisms of the oral mucosa against pathogenic organisms. Further research into the specific metabolic pathways and interactions of A. naeslundii strain W8-2-3 could yield insights into its contributions to oral health and disease dynamics within the oral microbiome." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces naeslundii Positive Facultative anaerobe submucosal sulcus 1655 MSKY00000000.1 Bac0014201 Alkalihalophilus pseudofirmus strain MRWL7 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalihalophilus Alkalihalophilus pseudofirmus 79885 MSLQ00000000.1 Bac0014202 Alkalihalophilus pseudofirmus strain MRML5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalihalophilus Alkalihalophilus pseudofirmus 79885 MSLR00000000.1 Bac0014203 Bacillus sp. MRMR6 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MRMR6 1928617 MSLS00000000.1 Bac0014204 Streptococcus azizii strain 12-5202 47 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus azizii microaerophile 1579424 MSPR00000000.1 Bac0014205 Thermoanaerobacterium sp. PSU-2 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium sp. PSU-2 1930849 MSQD00000000.1 Bac0014206 Lacticaseibacillus chiayiensis strain NCYUAS Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus chiayiensis 2100821 MSSM00000000.1 Bac0014207 Mycolicibacterium porcinum strain HMC1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium porcinum 39693 MSTD00000000.1 Bac0014208 Deinococcus marmoris strain PAMC 26562 "Deinococcus marmoris strain PAMC 26562 is a Gram-positive, spherical bacterium that exhibits aerobic metabolic characteristics and thrives optimally at a temperature of 16.0 °C. This strain is part of the Deinococcus genus, which is known for its remarkable resilience to extreme environmental conditions, although specific adaptations of PAMC 26562 to its ecological niche are not detailed in the available data.↵↵The spherical shape of this microbe suggests a potential for unique interactions within its environment, particularly in biofilm formation or symbiotic relationships, although these aspects require further investigation. Its aerobic nature indicates that it relies on oxygen for growth, which may influence its survival strategies and ecological roles in environments where oxygen is present.↵↵The preference for a lower optimal temperature aligns with the adaptation of D. marmoris to specific habitats, potentially including cold environments or deep-sea ecosystems. This characteristic may confer advantages in nutrient utilization or competition with other microorganisms in such specialized niches.↵↵Overall, Deinococcus marmoris strain PAMC 26562 exemplifies the adaptability of microorganisms to diverse and often extreme conditions, suggesting potential applications in bioremediation or biotechnology, particularly in cold environments where traditional microbial activity may be limited. Further research into its specific ecological interactions could provide valuable insights into its role within microbial communities." Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus marmoris Gram-positive sphere non-motile aerobic 16 psychrotolerant 249408 MSTI00000000.1 Bac0014209 Serratia sp. OLAL2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. OLAL2 1931999 MSTL00000000.1 Bac0014210 Proteobacteria bacterium ST_bin11 3388 Pseudomonadati Pseudomonadota Proteobacteria bacterium ST_bin11 1978759 MSXO00000000.1 Bac0014211 Proteobacteria bacterium ST_bin14 6315 Pseudomonadati Pseudomonadota Proteobacteria bacterium ST_bin14 1978762 MSXR00000000.1 Bac0014212 Proteobacteria bacterium ST_bin15 11855 Pseudomonadati Pseudomonadota Proteobacteria bacterium ST_bin15 1978763 MSXS00000000.1 Bac0014213 Helicobacter pylori strain PZ5009-3A2 "Helicobacter pylori strain PZ5009-3A2 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain exhibits an optimal growth temperature of 37.0°C, aligning with its adaptation to host-associated environments, where it likely resides in the gastric mucosa of mammals. ↵↵As a member of the Helicobacter genus, strain PZ5009-3A2's microaerophilic nature suggests a preference for environments with reduced oxygen levels, which is typical of the gastric environment. Such adaptations may influence its metabolic pathways and survival strategies in the acidic conditions of the stomach. The solitary arrangement of cells may reflect a lifestyle that minimizes competition for resources in a highly specialized niche. ↵↵The precise ecological role of Helicobacter pylori strain PZ5009-3A2 within its host habitat may provide insights into the broader interactions of microbiota in the gastrointestinal tract, particularly regarding its potential influence on host health and disease. Understanding its specific adaptations and behaviors could further illuminate the complex dynamics of host-microbe interactions in gastrointestinal ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MSYO00000000.1 Bac0014214 Neisseria dumasiana strain 124861 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria dumasiana 1931275 MTAB00000000.1 Bac0014215 Nostoc sp. T09 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. T09 1932621 MTAV00000000.1 Bac0014216 Diaphorobacter sp. LR2014-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter sp. LR2014-1 1933219 MTBE00000000.1 Bac0014217 Neisseria zoodegmatis strain DSM 21643 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria zoodegmatis 326523 MTBM00000000.1 Bac0014218 Neisseria dentiae strain DSM 19151 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria dentiae microaerophile 194197 MTBO00000000.1 Bac0014219 Flavobacterium sp. FPG59 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. FPG59 1929267 MTCA00000000.1 Bac0014220 Tatumella sp. OPLPL6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Tatumella sp. OPLPL6 1928657 MTCG00000000.1 Bac0014221 Erwinia sp. OLMDLW33 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia sp. OLMDLW33 1928656 MTCH00000000.1 Bac0014222 Flavobacterium oreochromis strain 1214 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium oreochromis 2906078 MTCY00000000.1 Bac0014223 Flavobacterium davisii strain 1215 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium davisii 2906077 MTCZ00000000.1 Bac0014224 Campylobacter fetus strain 12S01908-5 "Campylobacter fetus strain 12S01908-5 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This strain is microaerophilic, indicating that it requires a reduced level of oxygen for optimal growth and survival. Campylobacter species, including strain 12S01908-5, are typically host-associated, suggesting a symbiotic or pathogenic relationship with their hosts, which may include a variety of animals.↵↵The microaerophilic nature of Campylobacter fetus strain 12S01908-5 implies that it thrives in environments with lower-than-atmospheric levels of oxygen, which is often found in the gastrointestinal tracts of warm-blooded animals. This adaptation allows the bacterium to effectively colonize and persist in specific host niches, where it may play a role in the microbiota or influence host health.↵↵Given its unique morphological and physiological traits, strain 12S01908-5 may contribute to our understanding of microbial adaptations to host-associated environments. Its ability to form chains could suggest a potential for cooperative behavior among cells, which may enhance its survival and persistence in microaerobic conditions. Further research into this strain could illuminate its ecological roles and interactions within its host environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus Negative Spirilla Yes 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 196 MTDY00000000.1 Bac0014225 Caballeronia sordidicola strain PAMC 26633 BSU0408011 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia sordidicola 196367 MTHB00000000.1 Bac0014226 Tessaracoccus sp. ZS01 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus sp. ZS01 1906324 MTHC00000000.1 Bac0014227 Azonexus hydrophilus strain ZS02 "Azonexus hydrophilus strain ZS02 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic growth, demonstrating its versatility in utilizing both aerobic and anaerobic metabolic pathways. This strain thrives optimally at a temperature of 37.0°C, suggesting a preference for warm environments, which may be reflective of its adaptation to specific ecological niches. Notably, Azonexus hydrophilus strain ZS02 is non-spore-forming, indicating that it relies on other survival strategies rather than sporulation to withstand environmental stressors.↵↵The ability to grow under varying oxygen conditions may facilitate its survival in diverse habitats, potentially allowing it to occupy both oxygen-rich and oxygen-limited environments. Such adaptability could play a significant role in its interactions within microbial communities, influencing nutrient cycling and energy flow in its ecosystem. Further studies could elucidate its ecological functions and the implications of its metabolic flexibility in various habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Azonexaceae Azonexus Azonexus hydrophilus Gram-negative rod facultative aerobe/anaerobe 37 mesophilic non-spore-forming 418702 MTHD00000000.1 Bac0014228 Brevundimonas sp. ZS04 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. ZS04 1906854 MTHE00000000.1 Bac0014229 Streptomyces sp. ZL-24 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ZL-24 1933029 MTHF00000000.1 Bac0014230 Streptomyces sp. 46 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 46 1777322 MTHG00000000.1 Bac0014231 Vibrio sp. V01_P9A10T6 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. V01_P9A10T6 2116368 MTIN00000000.1 Bac0014232 Bacillus swezeyi strain NRRL B-41282 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus swezeyi 1925020 MTJL00000000.1 Bac0014233 Burkholderia ubonensis strain A21 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 MTJZ00000000.1 Bac0014234 [Flexibacter] sp. ATCC 35208 419 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga [Flexibacter] sp. ATCC 35208 1936242 MTKN00000000.1 Bac0014235 Helicobacter pylori strain HP725g "Helicobacter pylori strain HP725g is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found in the gastric environment of its host organisms. As a member of the Helicobacter genus, HP725g is predominantly associated with host organisms, suggesting a close relationship with specific ecological niches within the gastrointestinal tract.↵↵Microaerophilic organisms require lower levels of oxygen for growth than are present in the atmosphere, indicating that HP725g may occupy specific microenvironments where oxygen levels are limited, such as within the gastric mucosa. The unique morphology of this strain, combined with its habitat preference, may play a crucial role in its survival and potential interactions within the host's microbiome. ↵↵Furthermore, the solitary arrangement of HP725g cells could suggest adaptations for motility and colonization in its host environment, where individual cells may navigate complex mucosal layers. The study of this strain could provide valuable insights into the ecological dynamics of gastric microbiota and the role of Helicobacter species in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MTLF00000000.1 Bac0014236 Escherichia coli strain ICBEcBL-II-13 "Escherichia coli strain ICBEcBL-II-13 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments, which is a common trait among E. coli strains. The optimal growth temperature for ICBEcBL-II-13 is approximately 37.0°C, aligning with the physiological temperature of its host organisms, suggesting a potential adaptation for survival in warm-blooded hosts. ↵↵The habitat of this strain is characterized as host-associated, indicating its presence in association with living organisms, potentially including humans and other animals. This trait underscores the importance of understanding the microbial dynamics within host environments, as host-associated microbes can play significant roles in various biological processes, including digestion and immune response modulation.↵↵Given its facultative anaerobic nature and optimal growth temperature, E. coli strain ICBEcBL-II-13 may contribute to the complex microbial ecosystems found within the gastrointestinal tract of its host. This strain exemplifies the adaptability of E. coli to diverse environments, highlighting its potential role in nutrient cycling and interaction with the host immune system, which could have broader implications for health and disease management in host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MTPS00000000.1 Bac0014237 Arthrobacter sp. SRS-W-1-2016 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. SRS-W-1-2016 1930254 MTPV00000000.1 Bac0014238 [Flexibacter] sp. ATCC 35103 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium [Flexibacter] sp. ATCC 35103 1937528 MTQF00000000.1 Bac0014239 Leifsonia sp. ALI-44-B Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. ALI-44-B 1933776 MTQL00000000.1 Bac0014240 Actinosynnema sp. ALI-1.44 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinosynnema Actinosynnema sp. ALI-1.44 1933779 MTQO00000000.1 Bac0014241 Pseudomonas syringae strain PDD-32b-74 "Pseudomonas syringae strain PDD-32b-74 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and demonstrates heterotrophic metabolism, utilizing organic compounds as energy sources. This strain is classified as an aerobic organism, indicating its requirement for oxygen during growth and metabolic processes. Pseudomonas syringae is known to inhabit a variety of environments, which may contribute to its adaptability and potential roles in diverse ecological contexts.↵↵The ability of Pseudomonas syringae strain PDD-32b-74 to thrive in multiple habitats suggests a versatile nature, capable of exploiting various organic substrates in environments rich in nutrients. This adaptability may also imply interactions with other microorganisms and contributions to biogeochemical cycles, particularly in nitrogen and carbon cycling, where heterotrophic bacteria play significant roles. As such, the ecological significance of this strain could be explored further, particularly in relation to its interactions within microbial communities and its potential influence on nutrient dynamics in its native habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 MTSA00000000.1 Bac0014242 Hymenobacter crusticola strain MIMBbqt21 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter crusticola 1770526 MTSE00000000.1 Bac0014243 Oceanospirillum multiglobuliferum strain ATCC 33336 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Oceanospirillum Oceanospirillum multiglobuliferum 64969 MTSM00000000.1 Bac0014244 Leptospira santarosai strain M52/8-19 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 28183 MTSU00000000.1 Bac0014245 Klebsiella pneumoniae strain MB369 "Klebsiella pneumoniae strain MB369 is a Gram-negative, nonsporulating rod that typically occurs in various arrangements, including singles, pairs, and chains. This strain is a chemoheterotroph, utilizing organic compounds as its energy source, which aligns with its habitat as a host-associated microbe. Optimal growth conditions for strain MB369 are observed at 37.0°C, indicating a preference for temperatures that are commonly found in mammalian hosts.↵↵As a facultative anaerobe, K. pneumoniae strain MB369 can thrive in both aerobic and anaerobic environments, providing it with a versatile metabolic capability that may enhance its survival in diverse host conditions. The strain's adaptability to varying oxygen levels suggests a potential role in various ecological niches within host organisms, where it may engage in complex interactions with the host's microbiota and immune responses.↵↵Understanding the traits of K. pneumoniae strain MB369 contributes to a broader comprehension of its ecological dynamics, particularly in host-associated environments. The ability to form arrangements such as chains and pairs may facilitate communication and cooperation among cells, potentially influencing its persistence and function within the host microbiome. This trait highlights the importance of microbial community structures and their implications for host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 MTSV00000000.1 Bac0014246 Helicobacter pylori strain PZ5006_3A3 "Helicobacter pylori strain PZ5006_3A3 is a Gram-negative microbe characterized by its spirilla shape and single cell arrangement. This strain thrives in host-associated environments, suggesting a specialized adaptation for survival within specific biological niches. Optimal growth occurs at a temperature of 37.0°C, which aligns with the typical physiological temperature of the human body, further indicating its potential association with mammalian hosts.↵↵As a microaerophilic organism, H. pylori strain PZ5006_3A3 requires reduced levels of oxygen for its metabolic processes, which is consistent with its habitat in the human gastric environment where oxygen levels are limited. This adaptation may confer advantages in colonizing the gastric mucosa, where it can evade the host's immune responses while utilizing the available nutrients in the acidic environment of the stomach.↵↵Understanding the traits of H. pylori strain PZ5006_3A3 enhances our knowledge of its ecological role in host-associated habitats, particularly its potential interactions with the host's microbiota and immune system. The microaerophilic nature of this strain may also reveal insights into its metabolic pathways and survival strategies in low-oxygen conditions, highlighting the intricate balance between microbial life and host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MTWK00000000.1 Bac0014247 Helicobacter pylori strain SV328_2 "Helicobacter pylori strain SV328_2 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, requiring reduced levels of oxygen for optimal growth. It is typically found associated with host organisms, indicating a specific ecological niche where it likely interacts closely with host physiology. The optimal temperature for strain SV328_2 growth is around 37.0°C, which corresponds to the normal body temperature of many mammals, further suggesting its adaptation to a host-associated lifestyle.↵↵The combination of its Gram-negative structure and spirilla morphology suggests that H. pylori strain SV328_2 may possess unique mechanisms for motility and colonization within the gastric environment. This structural configuration may enable it to navigate the viscous mucus layer of the gastric epithelium, a critical factor for survival and persistence in the stomach. Understanding the specific traits of this strain can provide insights into its ecological roles and potential interactions with its host, particularly in relation to the gastric microbiome and host health. Furthermore, the microaerophilic requirement highlights the organism's adaptation to specific niches within the host that may be less accessible to other microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MTWO00000000.1 Bac0014248 Helicobacter pylori strain SV397_2 "Helicobacter pylori strain SV397_2 is a Gram-negative microbe characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori strain SV397_2 requires reduced oxygen levels for growth, making it well-suited to the oxygen-limited environments typically found in the gastric mucosa of its host.↵↵The spiral morphology of H. pylori is believed to play a crucial role in its motility and ability to colonize the gastric epithelium, potentially aiding in its survival in the harsh acidic conditions of the stomach. The host-associated habitat suggests a close relationship with its environment, which may influence its metabolic processes and survival strategies. ↵↵Understanding the specific traits of Helicobacter pylori strain SV397_2, including its microaerophilic nature and optimal growth temperature, can provide valuable insights into its ecological niche and potential interactions within the host. This strain exemplifies the complexity of microbial adaptation to specific environments, highlighting the evolutionary strategies that enable survival in host-associated conditions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MTWS00000000.1 Bac0014249 Helicobacter pylori strain SV380_1 "Helicobacter pylori strain SV380_1 is a Gram-negative bacterium characterized by its distinctive spirilla shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, indicating its requirement for reduced oxygen levels, which aligns with its natural habitat associated with host organisms. Optimal growth occurs at a temperature of 37.0°C, a condition typical for many mesophilic pathogens that colonize the human gastrointestinal tract.↵↵As a host-associated microbe, H. pylori strain SV380_1 has adapted to survive within the complex microenvironment of the stomach, where it may play a role in various physiological processes. The microaerophilic nature of this strain suggests that it occupies niches within the gastric mucosa that are less accessible to fully aerobic bacteria, thus contributing to its persistence in a competitive microbial community.↵↵Understanding the ecological role of H. pylori strain SV380_1 further illuminates the intricate relationships between host factors, microbial behavior, and environmental conditions. This microbe's adaptation to host-associated habitats and specific oxygen requirements underscores its potential impact on the microbial ecology of the gastrointestinal tract, highlighting the importance of studying such strains to unravel the complexities of host-microbe interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 MTWU00000000.1 Bac0014250 Klebsiella aerogenes strain LIM107 107_rep_c1442 "Klebsiella aerogenes strain LIM107 107_rep_c1442 is a Gram-negative bacterium characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is associated with host organisms, suggesting a potential role in symbiotic or pathogenic relationships within its ecological niche. ↵↵Klebsiella aerogenes is known for its adaptability to varying oxygen levels, which enables it to metabolize a range of substrates depending on the availability of oxygen. This metabolic versatility likely contributes to its survival and proliferation in diverse host-associated environments, where competition for nutrients can be intense. ↵↵The Gram-negative nature of this bacterium is indicative of its unique cell wall structure, which consists of a thin layer of peptidoglycan surrounded by an outer membrane containing lipopolysaccharides. This structure not only plays a crucial role in the organism's resistance to certain antibiotics but also influences its interactions with host immune systems.↵↵Further research on strain LIM107 could provide insights into its specific metabolic pathways and interactions with its host, potentially revealing its contributions to host health or disease. Understanding the ecological roles of such strains, particularly in relation to their biochemical processes and environmental adaptability, may illuminate their significance in microbiome studies and their impact on host biology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella aerogenes Negative 1 Facultative anaerobe Mesophilic HostAssociated Free living 548 MTZP00000000.1 Bac0014251 Lactobacillus gasseri strain AL3 "Lactobacillus gasseri strain AL3 is a rod-shaped bacterium belonging to the Lactobacillus genus, which is well-known for its role in fermentation and probiotic applications. This strain exhibits typical characteristics of lactic acid bacteria, including the ability to ferment carbohydrates and produce lactic acid as a primary metabolic end product. The rod shape of L. gasseri strain AL3 is significant, as it can influence the bacterium's surface interactions and adhesion properties, which are crucial for its functionality in various environments, such as the gastrointestinal tract.↵↵Lactobacillus gasseri strains, including AL3, are often associated with the maintenance of gut health and the modulation of the gut microbiota. The rod shape may facilitate colonization and biofilm formation, which could enhance the strain's ability to confer health benefits. Additionally, the metabolic activities of this strain may contribute to the production of short-chain fatty acids, which are essential for gut health and play a role in regulating host immune responses.↵↵This strain's ecological insight lies in its potential role as a probiotic, where its rod shape may enhance the bacterium's resilience in the digestive system, allowing it to thrive in competitive environments and contribute to the overall balance of gut microbiota. Further research on L. gasseri strain AL3 may elucidate its specific interactions within the human microbiome and its applications in health and nutrition." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus paragasseri Rod 2107999 MTZT00000000.1 Bac0014252 Escherichia coli strain SJRP/Ec42664 Cotig_57 "Escherichia coli strain SJRP/Ec42664 Cotig_57 is a Gram-negative rod-shaped bacterium that typically exists in pairs or singles and is categorized as a facultative anaerobe, thriving optimally at 37.0°C. This strain, like other members of the genus Escherichia, is primarily host-associated, indicating its presence in the gastrointestinal tract of various hosts, where it may play a role in nutrient absorption and microbiome dynamics.↵↵The rod shape and arrangement of the cells facilitate motility and interaction with the host environment, which is crucial for its survival and potential symbiotic functions. As a facultative anaerobe, this strain can adapt to varying oxygen levels, allowing it to thrive in both aerobic and anaerobic conditions commonly found within the host's gut.↵↵Understanding the specific habitat preferences and physiological traits of Escherichia coli strain SJRP/Ec42664 Cotig_57 is essential for exploring its interactions within the host microbiome. These interactions may provide insights into its potential roles in metabolic processes or nutrient cycling in host-associated environments, contributing to our broader understanding of microbial ecology and the maintenance of gut health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MUAB00000000.1 Bac0014253 Bacillus mycoides strain FSL W7-1108 "Bacillus mycoides strain FSL W7-1108 is a Gram-positive, rod-shaped bacterium that thrives as a facultative anaerobe in the deep-sea environment of the Iheya Ridge hydrothermal vent field located in the Okinawa Trough. This strain's ability to adapt to varying oxygen levels suggests its metabolic versatility, enabling it to utilize both aerobic and anaerobic pathways for energy production, which is particularly advantageous in the fluctuating conditions of hydrothermal vent ecosystems.↵↵The unique habitat of B. mycoides strain FSL W7-1108 in a hydrothermal vent environment indicates potential adaptations to high-pressure and high-temperature conditions, typical of such extreme marine ecosystems. This bacterium may play a role in biogeochemical cycling within its niche, contributing to the breakdown of organic matter and possibly influencing the microbial community structure associated with hydrothermal vent habitats. The ecological implications of its metabolic capabilities highlight the potential for B. mycoides strain FSL W7-1108 to participate in nutrient recycling processes in deep-sea ecosystems, furthering our understanding of microbial life in extreme environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 MUAI00000000.1 Bac0014254 Bacillus cereus strain FSL K6-1030 "Bacillus cereus strain FSL K6-1030 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain has an optimal growth temperature of 25.0°C and thrives in aerobic conditions, which indicates its reliance on oxygen for metabolic processes. The organism is known to inhabit multiple environments, suggesting a versatile ecological niche.↵↵Bacillus cereus is part of a larger genus known for its adaptability, and strain FSL K6-1030 exemplifies this trait through its ability to proliferate in diverse habitats. The chain arrangement of cells may facilitate nutrient acquisition and environmental resilience, enabling the strain to exploit various ecological niches effectively. This morphological characteristic, combined with its aerobic nature, implies that strain FSL K6-1030 may play a role in the decomposition of organic materials in oxygen-rich environments, potentially contributing to nutrient cycling in its habitats. Understanding the specific ecological roles of such strains may provide insights into their contributions to microbial communities and ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 MUAU00000000.1 Bac0014255 Raoultella terrigena strain NZ133 "Raoultella terrigena strain NZ133 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain is capable of thriving in diverse environments, including freshwater, milk, various plants, and soil, indicating its ecological versatility. The ability to grow in both oxygen-rich and low-oxygen conditions allows R. terrigena NZ133 to occupy a variety of ecological niches, contributing to its adaptability in fluctuating environments.↵↵The presence of this strain in freshwater and soil ecosystems suggests a potential role in nutrient cycling and organic matter decomposition. Additionally, its occurrence in milk and plant habitats may indicate its involvement in interactions with microbial communities and possibly in the fermentation processes associated with dairy products. While specific pathogenicity traits have not been established for this strain, its environmental resilience and adaptability highlight the importance of R. terrigena NZ133 in microbial ecology and its potential implications for biotechnological applications, such as bioremediation or agricultural enhancement. Understanding the ecological functions of R. terrigena NZ133 may provide insights into its contributions to ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella terrigena negative Rod facultative anaerobe Fresh water; milk; plants; soil 577 MUBF00000000.1 Bac0014256 Bartonella sp. WD12.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella sp. WD12.1 1933903 MUBG00000000.1 Bac0014257 Xenorhabdus vietnamensis strain DSM 22392 Xvie_149 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus vietnamensis 351656 MUBJ00000000.1 Bac0014258 Escherichia coli strain SJRP/Ec42695 Cotig_84 "Escherichia coli strain SJRP/Ec42695 Cotig_84 is a Gram-negative, rod-shaped bacterium primarily found in host-associated habitats, exhibiting a versatile growth profile as a facultative anaerobe. This strain typically exists in pairs or as single cells, indicative of its adaptive strategies in varying environments. Optimal growth conditions for this strain occur at a temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts, further supporting its association with host organisms.↵↵As a member of the Enterobacteriaceae family, E. coli strains like SJRP/Ec42695 Cotig_84 play significant roles in the gut microbiota of various hosts, contributing to microbial diversity and metabolic processes. The facultative anaerobic nature of this strain allows it to thrive in both oxygen-rich and oxygen-poor environments, a trait that enhances its survival and competitiveness within the host gastrointestinal tract.↵↵Understanding the specific traits of E. coli strain SJRP/Ec42695 Cotig_84 may provide insights into its potential roles in nutrient metabolism or interactions with host immune systems. Further investigation into its ecological roles could reveal how this strain contributes to the overall functionality and stability of the microbial communities within its specific host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MUBQ00000000.1 Bac0014259 SAR202 cluster bacterium Io17-Chloro-G9 DeepMed-Io17-C978 Bacillati Chloroflexota Dehalococcoidia SAR202 cluster bacterium Io17-Chloro-G9 1926618 MUCW00000000.1 Bac0014260 Flavobacterium sp. LM4 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. LM4 1938609 MUFW00000000.1 Bac0014261 Flavobacterium sp. LM5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. LM5 1938610 MUFX00000000.1 Bac0014262 Pyramidobacter sp. C12-8 Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp. C12-8 1943580 MUHX00000000.1 Bac0014263 Candidatus Pandoraea novymonadis strain E262 Pnov_06 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Candidatus Pandoraea novymonadis 1808959 MUHY00000000.1 Bac0014264 Oceanospirillales bacterium LUC14_002_19_P2 _11612 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillales bacterium LUC14_002_19_P2 1940822 MUIA00000000.1 Bac0014265 Pseudomonas sp. Bc-h sc_073 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Bc-h 1943632 MUIN00000000.1 Bac0014266 Lactococcus petauri strain 159469 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus petauri 1940789 MUIZ00000000.1 Bac0014267 Pseudomonas sp. PIC25 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PIC25 1958773 MUJY00000000.1 Bac0014268 Billgrantia desiderata SP1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia desiderata 1191209 MUMZ00000000.1 Bac0014269 Polaromonas sp. A23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. A23 1944133 MUNO00000000.1 Bac0014270 Rhodanobacter sp. C01 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. C01 1945856 MUNR00000000.1 Bac0014271 Polaromonas sp. C04 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. C04 1945857 MUNS00000000.1 Bac0014272 Rhodanobacter sp. B05 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. B05 1945859 MUNU00000000.1 Bac0014273 Rhodanobacter sp. B04 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter sp. B04 1945860 MUNV00000000.1 Bac0014274 Sinorhizobium sp. A49 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. A49 1945861 MUNW00000000.1 Bac0014275 Flavobacterium sp. A45 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. A45 1945862 MUNX00000000.1 Bac0014276 Herbaspirillum sp. VT-16-41 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum sp. VT-16-41 1953765 MUXB00000000.1 Bac0014277 Streptococcus pseudopneumoniae strain CCUG 62647 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 257758 MUXQ00000000.1 Bac0014278 Glaesserella parasuis strain CCUG 3712 "Glaesserella parasuis strain CCUG 3712 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is known to be host-associated, suggesting a close relationship with its host organism, which may provide specific ecological niches that support its survival and proliferation.↵↵The facultative anaerobic trait of G. parasuis strain CCUG 3712 allows it to adapt to varying oxygen levels, which is particularly advantageous in the complex environments of host tissues. The rod shape of the bacterium may facilitate its motility and colonization within host-associated habitats. ↵↵The ecological role of G. parasuis strain CCUG 3712 likely involves interactions with the host's immune system, potentially influencing microbial community dynamics and host health. Furthermore, understanding the specific adaptations of this strain to its host environment may provide insights into its interactions with other microbial species present in the host's microbiome. This information could be pivotal for exploring ecological balance and potential implications in health and disease scenarios related to this bacterium." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living Animal 738 MUXW00000000.1 Bac0014279 Haemophilus paracuniculus strain CCUG 43573 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus paracuniculus microaerophile 734 MUYA00000000.1 Bac0014280 [Haemophilus] felis strain CCUG 31170 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae [Haemophilus] felis 123822 MUYB00000000.1 Bac0014281 Streptococcus mitis strain CCUG 63687 "Streptococcus mitis strain CCUG 63687 is a Gram-positive, non-sporulating cocci that typically occurs in chains and pairs. As a facultative anaerobe, this strain is capable of surviving in both aerobic and anaerobic environments, which may enhance its adaptability within host-associated habitats. ↵↵Streptococcus mitis is commonly found in the oral cavity and respiratory tract of humans, where it contributes to the complex microbiota of these niches. Its ability to thrive in varied oxygen conditions suggests a versatile metabolism that may be advantageous for colonization and persistence in diverse host environments. ↵↵The strain's nonsporulating nature indicates that it does not form spores, which could influence its survival strategies under stress conditions. Instead, it likely relies on its capacity to multiply rapidly and form resilient communities through its chain and pair arrangements.↵↵Given its ecological role, Streptococcus mitis strain CCUG 63687 may play a significant part in maintaining oral health, potentially competing with pathogenic bacteria and contributing to the overall balance of the microbiome. Further studies may illuminate its interactions within host-associated environments and its contributions to microbial community dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 MUYO00000000.1 Bac0014282 Micromonospora sp. MH33 B0E53_662 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. MH33 1945509 MUYZ00000000.1 Bac0014283 Methanosphaera sp. DEW79 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. DEW79 1945576 MUZW00000000.1 Bac0014284 Methanosphaera sp. rholeuAM74 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. rholeuAM74 1945579 MUZZ00000000.1 Bac0014285 Methanosphaera sp. rholeuAM6 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. rholeuAM6 1945580 MVAA00000000.1 Bac0014286 Vagococcus martis strain D7T301 D7T301_3_1 "Vagococcus martis strain D7T301 D7T301_3_1 is a Gram-positive, spherical bacterium that exhibits facultative aerobe/anaerobe characteristics, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This strain demonstrates optimal growth at a temperature of 37.0°C, suggesting a potential preference for conditions similar to those found in warm-blooded hosts or environments with similar thermal profiles. ↵↵As a member of the Vagococcus genus, this strain may contribute to various ecological processes, particularly in the breakdown of organic matter in diverse habitats. The ability to utilize different oxygen conditions may enhance its survival and metabolic versatility, enabling it to occupy ecological niches where oxygen levels fluctuate. Additionally, the spherical morphology of Vagococcus martis strain D7T301 D7T301_3_1 could be indicative of its adaptation strategies, allowing it to maintain structural integrity in variable environments. ↵↵Understanding the specific metabolic pathways and ecological roles of this strain could provide insights into its potential applications in biotechnology or environmental microbiology, particularly in processes involving nutrient cycling or bioremediation in both aerobic and anaerobic settings." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus martis Gram-positive sphere non-motile facultative aerobe/anaerobe 37 mesophilic 1768210 MVAB00000000.1 Bac0014287 Massilia sp. KIM Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. KIM 1955422 MVAD00000000.1 Bac0014288 Chryseobacterium mucoviscidosis strain VT16-26 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium mucoviscidosis 1945581 MVAG00000000.1 Bac0014289 Thioalkalivibrio versutus strain AL 2 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio versutus 106634 MVAR00000000.1 Bac0014290 Thioalkalivibrio denitrificans strain ALJD Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio denitrificans 108003 MVBK00000000.1 Bac0014291 Arthrobacter sp. KBS0703 37 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. KBS0703 1955698 MVDG00000000.2 Bac0014292 Chroococcidiopsis sp. TS-821 Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis sp. TS-821 1378066 MVDI00000000.1 Bac0014293 Streptomyces sp. HG99 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. HG99 1958787 MVDM00000000.1 Bac0014294 Streptomyces tsukubensis strain F601 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tsukubensis 83656 MVFC00000000.1 Bac0014295 Microcystis aeruginosa KW Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1960155 MVGR00000000.1 Bac0014296 Mycolicibacterium bacteremicum strain DSM 45578 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium bacteremicum 564198 MVHJ00000000.1 Bac0014297 Mycobacterium bouchedurhonense strain DSM 45439 "Mycobacterium bouchedurhonense strain DSM 45439 is a Gram-positive bacterium characterized by its distinctive cell wall structure, which typically contains high levels of mycolic acids. This strain, part of the genus Mycobacterium, is likely to exhibit the unique slow growth rates commonly associated with this group of bacteria, although specific growth conditions have not been outlined in the available data. ↵↵The Gram-positive nature of M. bouchedurhonense suggests that it possesses a thick peptidoglycan layer, which contributes to its rigidity and resilience in various environments. Mycobacteria are known for their ability to survive under adverse conditions, which may reflect adaptations that allow for persistence in diverse ecological niches.↵↵While the pathogenic potential of this strain has not been specified, Mycobacterium species are generally recognized for their complex interactions with their environments, including potential roles in soil health and nutrient cycling. The unique traits of M. bouchedurhonense may provide insights into the ecological functions of mycobacteria in their habitats, potentially influencing microbial community dynamics and interactions with other soil microorganisms. Understanding the specific ecological roles of M. bouchedurhonense could enhance our knowledge of microbial ecology and the functional diversity of bacteria in natural environments." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium bouchedurhonense Gram-positive 701041 MVHL00000000.1 Bac0014298 Mycolicibacterium elephantis strain FI-09383 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium elephantis environment 81858 MVHP00000000.1 Bac0014299 Mycolicibacter kumamotonensis strain DSM 45093 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter kumamotonensis 354243 MVHU00000000.1 Bac0014300 Mycobacterium malmoense strain IP1130001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium malmoense 1780 MVHV00000000.1 Bac0014301 Mycobacterium mantenii strain DSM 45255 "Mycobacterium mantenii strain DSM 45255 is a rod-shaped bacterium characterized by its non-spore-forming nature and optimal growth temperature of 37.0°C. This strain is part of the Mycobacterium genus, which is known for its complex cell wall structure, including mycolic acids that contribute to its unique properties and resilience in various environments. ↵↵The non-spore-forming trait indicates that M. mantenii relies on other survival strategies, such as biofilm formation or other stress response mechanisms, to withstand environmental challenges. The optimal growth temperature of 37.0°C suggests that this microbe is well-adapted to human-associated niches or environments that maintain physiological temperatures, which may influence its metabolic activities and interactions with other microorganisms.↵↵Understanding the specific growth conditions and morphological characteristics of Mycobacterium mantenii strain DSM 45255 not only aids in its identification but also enhances our knowledge of its potential roles in various ecosystems. Given its temperature preference, this strain may play a significant role in the microbial communities associated with warm-blooded hosts or environments that mimic these conditions, potentially influencing nutrient cycling and microbial diversity in such habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium mantenii rod 37 mesophilic non-spore-forming 560555 MVHW00000000.1 Bac0014302 Mycolicibacterium monacense DSM 44395 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium monacense 1226751 MVIA00000000.1 Bac0014303 Mycobacterium noviomagense strain DSM 45145 "Mycobacterium noviomagense strain DSM 45145 is a Gram-positive, rod-shaped bacterium that belongs to the genus Mycobacterium. This strain is characterized by its distinctive cell wall structure, which is rich in mycolic acids, contributing to its resilience and ability to survive in various environments. The Gram-positive nature indicates that it retains a violet stain during the Gram staining process, a feature typical of bacteria with a thick peptidoglycan layer.↵↵M. noviomagense strain DSM 45145 is part of a lineage known for its slow growth rate, which may influence its ecological niche and interactions with other microorganisms. While specific ecological roles of this strain are not detailed, members of the Mycobacterium genus are often found in diverse environments, including soil and water, suggesting that this strain may contribute to biogeochemical cycles. Furthermore, its rod shape facilitates motility and colonization in various habitats, allowing it to occupy ecological niches that may be less accessible to coccoid forms.↵↵Given its potential persistence in various environmental conditions, M. noviomagense strain DSM 45145 may play a role in the degradation of organic matter or in the cycling of nutrients within its habitat. Understanding the traits and ecological significance of this strain could provide insights into its functional role within microbial communities and its interactions with other organisms in the ecosystem." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium noviomagense Gram-positive rod 459858 MVIC00000000.1 Bac0014304 Mycolicibacterium rhodesiae strain DSM 44223 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium rhodesiae environment 36814 MVIH00000000.1 Bac0014305 Mycobacteroides saopaulense strain CCUG 66554 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides saopaulense 1578165 MVII00000000.1 Bac0014306 Mycobacterium scrofulaceum strain DSM 43992 "Mycobacterium scrofulaceum strain DSM 43992 is a rod-shaped bacterium belonging to the genus Mycobacterium. This strain is notable for its distinct morphological characteristics, which contribute to its classification within the Actinobacteria phylum. As a member of this complex group of bacteria, M. scrofulaceum exhibits the typical features associated with mycobacterial cell wall structure, including the presence of mycolic acids, which confer unique staining properties and resilience to environmental stresses.↵↵The rod shape of Mycobacterium scrofulaceum is significant for its identification and differentiation from other bacterial species. This morphological trait is often assessed using microscopy techniques, which reveal the organism's characteristic dimensions and arrangement. Understanding the shape and structure of M. scrofulaceum is crucial for microbiologists aiming to isolate and characterize this strain in laboratory settings.↵↵In addition, the rod morphology may play a role in the organism's interaction with its environment, influencing aspects such as motility, surface adhesion, and nutrient acquisition. While specific ecological roles of M. scrofulaceum strain DSM 43992 have not been detailed in the available data, its rod shape may facilitate colonization of various substrates, potentially allowing it to thrive in diverse habitats. Further research is necessary to elucidate its ecological niche and the implications of its morphological traits in microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium scrofulaceum Rod 1783 MVIJ00000000.1 Bac0014307 Mycobacterium shinjukuense strain CCUG 53584 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium shinjukuense 398694 MVIK00000000.1 Bac0014308 Legionella quinlivanii strain ID143958 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella quinlivanii 45073 MVJN00000000.1 Bac0014309 Mycobacterium sp. AT1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. AT1 1961706 MVOC00000000.1 Bac0014310 Rubrivirga sp. SAORIC476 Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. SAORIC476 1961794 MVOI00000000.1 Bac0014311 Acinetobacter sp. MF4640 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. MF4640 1960826 MVOM00000000.1 Bac0014312 Escherichia coli strain GMR-RB-634 "Escherichia coli strain GMR-RB-634 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic conditions. It exhibits optimal growth at a temperature of 37.0°C, which aligns with the physiological temperature of the mammalian host environments it inhabits.↵↵As a member of the Enterobacteriaceae family, E. coli strain GMR-RB-634 is primarily host-associated, suggesting that it occupies niches within the gastrointestinal tracts of various organisms, including humans and other mammals. The facultative anaerobic nature of this strain enables it to adapt to fluctuating oxygen levels within the host, which is critical for its survival and proliferation in diverse biological environments.↵↵The presence of E. coli in host-associated habitats highlights its potential role in nutrient processing and gut microbiota dynamics. Furthermore, this strain's adaptability may facilitate its interactions with other microbial communities within the host, contributing to the overall homeostasis of the gut ecosystem. Understanding strains like GMR-RB-634 can provide valuable insights into microbial interactions and their implications for host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MVPO00000000.1 Bac0014313 Methanomassiliicoccales archaeon PtaB.Bin215 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccales archaeon PtaB.Bin215 1811728 MVQA00000000.1 Bac0014314 Methanoregula sp. PtaB.Bin085 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp. PtaB.Bin085 1811680 MVQB00000000.1 Bac0014315 Methanosaeta sp. PtaB.Bin087 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaB.Bin087 1811690 MVQJ00000000.1 Bac0014316 Methanosaeta sp. PtaU1.Bin060 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaU1.Bin060 1811688 MVRK00000000.1 Bac0014317 Methanosaeta sp. PtaU1.Bin055 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaU1.Bin055 1811691 MVRM00000000.1 Bac0014318 Syntrophorhabdaceae bacterium PtaU1.Bin034 Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae Syntrophorhabdaceae bacterium PtaU1.Bin034 1811715 MVRP00000000.1 Bac0014319 Smithella sp. PtaU1.Bin162 Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp. PtaU1.Bin162 1811697 MVRV00000000.1 Bac0014320 Saccharomonospora piscinae strain LRS4.154 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora piscinae 687388 MWIH00000000.1 Bac0014321 Panacagrimonas perspica strain DSM 26377 Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Panacagrimonas Panacagrimonas perspica 381431 MWIN00000000.1 Bac0014322 Microbispora sp. GKU 823 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Microbispora Microbispora sp. GKU 823 1652100 MWJN00000000.1 Bac0014323 Streptomyces sp. GKU 895 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. GKU 895 1662404 MWJO00000000.1 Bac0014324 Burkholderia sp. A27 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. A27 1755991 MWJQ00000000.1 Bac0014325 Cuniculiplasma sp. C_DKE Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Cuniculiplasmataceae Cuniculiplasma Cuniculiplasma sp. C_DKE 1961135 MWKS00000000.1 Bac0014326 Clostridium beijerinckii strain Br21 CBEIBR21_SCAFF28 "Clostridium beijerinckii strain Br21 (CBEIBR21_SCAFF28) is a Gram-positive, rod-shaped bacterium that typically exists in pairs or singles. This strain is classified as a chemoorganotroph, indicating its ability to derive energy from organic compounds. As an anaerobic organism, C. beijerinckii strain Br21 thrives in environments devoid of oxygen, such as fresh water and soil habitats.↵↵The ecological significance of C. beijerinckii strain Br21 lies in its potential role in organic matter decomposition and nutrient cycling within anaerobic environments. By metabolizing organic substrates, this strain may contribute to the breakdown of complex organic materials, thereby facilitating the release of nutrients that are essential for other microbial communities and plants. Furthermore, its ability to survive in both fresh water and soil suggests adaptability to varying environmental conditions, making it a significant player in the microbial ecology of these ecosystems. Understanding the metabolic pathways and ecological interactions of C. beijerinckii strain Br21 could provide insights into its applications in biotechnological processes, such as bioremediation and biofuel production." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles 1520 MWMH00000000.1 Bac0014327 Candidatus Nanoclepta minutus Nanobdellati Nanobdellota Candidatus Nanoclepta Candidatus Nanoclepta minutus 1940235 MWMI00000000.1 Bac0014328 Mycobacterium shigaense strain UN-152 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium shigaense 722731 MWON00000000.1 Bac0014329 Nitrobacter vulgaris strain Ab1 NvAb1_97 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Nitrobacter Nitrobacter vulgaris 29421 MWPQ00000000.1 Bac0014330 Kluyvera intermedia strain FOSA7093 C00007093_n1_c124 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kluyvera Kluyvera intermedia 61648 MWPR00000000.1 Bac0014331 Mycobacterium persicum strain 12MK Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium persicum 1487726 MWQA00000000.1 Bac0014332 Fibrobacter sp. UWR2 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWR2 1964352 MWQE00000000.1 Bac0014333 Fibrobacter sp. UWB5 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB5 1964360 MWQH00000000.1 Bac0014334 Fibrobacter sp. UWB4 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB4 1964356 MWQI00000000.1 Bac0014335 Fibrobacter sp. UWB1 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB1 1964355 MWQL00000000.1 Bac0014336 Marispirochaeta aestuarii strain JC444 "Marispirochaeta aestuarii strain JC444 is a Gram-negative, curved or spiral-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 32.0 °C. This strain is classified as a heterotroph, organotroph, and chemotroph, indicating its metabolic versatility in utilizing organic compounds as energy sources.↵↵The curved or spiral morphology of M. aestuarii strain JC444 may contribute to its motility and adaptability in various environments, particularly in aquatic ecosystems where such shapes are often advantageous for navigating through viscous substrates. The anaerobic nature of this organism suggests it plays a role in anoxic environments, possibly contributing to the degradation of organic matter in sediments or within microbial mats.↵↵Given its optimal temperature of 32.0 °C, M. aestuarii strain JC444 is likely well-suited for life in warm, brackish water habitats that may experience fluctuating temperatures. This characteristic may provide insight into its ecological niche, where it could interact with other microorganisms in complex biochemical cycles, such as those involved in nutrient recycling and energy flow in marine environments.↵↵Overall, M. aestuarii strain JC444 exemplifies the diverse metabolic capabilities of anaerobic bacteria and highlights the ecological significance of such microorganisms in maintaining the health and function of aquatic ecosystems." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Marispirochaeta Marispirochaeta aestuarii Gram-negative curved/spiral anaerobic 32 heterotroph; organotroph; chemotroph mesophilic 1963862 MWQY00000000.1 Bac0014337 Bacillus sp. DSM 27956 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. DSM 27956 1955699 MWSH00000000.1 Bac0014338 Priestia filamentosa strain DSM 27955 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia filamentosa 1402861 MWSI00000000.1 Bac0014339 Pseudoscardovia suis strain DSM 24744 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Pseudoscardovia Pseudoscardovia suis anaerobic 987063 MWWQ00000000.1 Bac0014340 Bifidobacterium myosotis strain DSM 100196 "Bifidobacterium myosotis strain DSM 100196 is a Gram-positive, rod-shaped bacterium that exhibits strict anaerobic growth and does not form spores. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the physiological conditions found in the mammalian gut, where Bifidobacteria are commonly located. ↵↵As a member of the Bifidobacterium genus, DSM 100196 is likely involved in the fermentation of dietary fibers and production of short-chain fatty acids, which can play a role in maintaining gut health. The non-spore-forming nature of this strain suggests that it relies on its anaerobic environment for survival and reproduction, rather than employing sporulation as a survival strategy in adverse conditions. ↵↵Given the anaerobic requirement, Bifidobacterium myosotis strain DSM 100196 may contribute to the establishment and maintenance of a balanced gut microbiota by outcompeting potential pathogens and supporting beneficial microbial communities. This interaction can enhance overall host health, emphasizing the importance of understanding such microorganisms in the context of gut ecology and their potential roles in health and disease management. The specific adaptations of this strain highlight its evolutionary success in low-oxygen environments, such as the intestinal tract of mammals." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium myosotis Gram-positive rod non-motile anaerobic 37 mesophilic non-spore-forming 1630166 MWWW00000000.1 Bac0014341 Bifidobacterium lemurum strain DSM 28807 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium lemurum anaerobic 1603886 MWWX00000000.1 Bac0014342 Bifidobacterium eulemuris strain DSM 100216 "Bifidobacterium eulemuris strain DSM 100216 is a Gram-positive, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and exhibits microaerophilic growth characteristics. As a member of the Bifidobacterium genus, this strain is characterized by its ability to ferment carbohydrates, contributing to its ecological role in the gastrointestinal tract of hosts. ↵↵The microaerophilic nature of Bifidobacterium eulemuris suggests that it requires lower levels of oxygen for growth, a trait that may facilitate its adaptation to anaerobic environments typically found in the intestines. This adaptation is significant as it allows the bacterium to coexist with other microbial species while participating in gut microbiota dynamics. ↵↵Understanding the physiology of Bifidobacterium eulemuris strain DSM 100216, particularly its temperature preference and oxygen requirements, can provide insights into its potential functions in fermentation processes and metabolic interactions within the gut ecosystem. This strain may play a role in maintaining the balance of intestinal flora, influencing digestive health and contributing to the overall well-being of the host organism. Further investigation into this strain could elucidate its specific contributions to gut microbiota diversity and its potential applications in probiotic development." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium eulemuris Gram-positive rod non-motile microaerophile 37 mesophilic 1765219 MWWZ00000000.1 Bac0014343 Bifidobacterium aquikefiri strain LMG 28769 "Bifidobacterium aquikefiri strain LMG 28769 is a Gram-positive, non-spore-forming rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This strain is part of the Bifidobacterium genus, which is known for its role in the gut microbiota of humans and other animals, contributing to various health benefits, including the modulation of gut microbiota composition and potential anti-inflammatory effects.↵↵As a member of the Bifidobacterium species, strain LMG 28769 may utilize a variety of carbohydrates, which could reflect its role in fermentative processes within anaerobic environments. The specific metabolic pathways and fermentation products of this strain, however, require further investigation to fully elucidate its functional role in microbial communities.↵↵Given its anaerobic requirements and optimal growth temperature, Bifidobacterium aquikefiri strain LMG 28769 likely occupies niche environments that are rich in organic substrates, such as those found in fermented foods or specific gut habitats. This strain's adaptation to such environments may offer insights into the ecological dynamics of fermentation processes and the role of beneficial microbes in promoting gut health, highlighting the importance of Bifidobacterium species in maintaining microbial balance within anaerobic ecosystems." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium aquikefiri Gram-positive rod non-motile anaerobic 29 mesophilic non-spore-forming 1653207 MWXA00000000.1 Bac0014344 Moraxella lacunata strain CCUG 4441 CCUG_4441T_0000138 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella lacunata 477 MXAN00000000.1 Bac0014345 Brevibacillus brevis strain ATCC 35690 VM4.mira_rep_c143 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus brevis 1393 MXAR00000000.1 Bac0014346 Acidithiobacillus marinus strain SH Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus marinus 187490 MXAV00000000.1 Bac0014347 Rhizobium esperanzae strain CNPSo 668 "Rhizobium esperanzae strain CNPSo 668 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and non-spore-forming nature. This strain belongs to the genus Rhizobium, which is well-known for its role in symbiotic nitrogen fixation in legumes. As an aerobic organism, R. esperanzae strain CNPSo 668 requires oxygen for growth and metabolic processes, aligning with the physiological traits common to many members of the Rhizobium genus.↵↵The non-sporulating characteristic of this strain suggests a reliance on favorable environmental conditions for survival and reproduction, as it does not produce spores to withstand adverse conditions. The Gram-negative cell wall structure typically comprises a thin peptidoglycan layer and an outer membrane, which may contribute to its adaptability in various soil environments.↵↵Research into R. esperanzae strain CNPSo 668 could provide insights into its potential applications in sustainable agriculture, particularly in enhancing soil fertility through nitrogen fixation. Its specific interactions with host plants and soil microbiome could reveal unique biological processes that promote plant health and ecosystem sustainability. Understanding these dynamics may offer valuable contributions to developing environmentally friendly agricultural practices, thereby supporting the importance of microbial diversity in soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium esperanzae Gram-negative rod aerobic non-spore-forming 1967781 MXPU00000000.1 Bac0014348 Pseudoalteromonas sp. A601 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. A601 1967839 MXQF00000000.1 Bac0014349 Delftia sp. K82 KDK82_21_1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia sp. K82 1472718 MYFL00000000.1 Bac0014350 Escherichia coli strain TH14515 cps locus K1 genomic sequence. "Escherichia coli strain TH14515, characterized by its negative Gram stain and rod shape, exhibits a cellular arrangement primarily in pairs and singles. This strain thrives optimally at a temperature of 37.0°C, aligning with the typical growth conditions found in warm-blooded host organisms. As a facultative anaerobe, E. coli TH14515 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, which may facilitate its adaptability to various host-associated habitats.↵↵The genomic sequence of the cps locus of strain TH14515 is particularly noteworthy, as it may provide insights into the genetic basis for capsule synthesis, a trait that can influence the microbe’s interaction with the host environment. Given its habitat, E. coli TH14515 likely plays a role in the complex microbiota of its host, potentially contributing to various metabolic processes or interactions with other microbial species. ↵↵Understanding the genomic features associated with this strain, particularly those related to its adaptability and survival in host-associated environments, can offer valuable perspectives on the broader ecological roles of E. coli within the microbiome. This insight may enhance our comprehension of how such microorganisms contribute to the health and function of their respective ecosystems, especially in relation to their host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 MZ339217.1 Bac0014351 Candidatus Aminicenantes bacterium 4484_214 Candidatus Aminicenantota Candidatus Aminicenantes bacterium 4484_214 1968529 MZGL00000000.1 Bac0014352 Methanobrevibacter thaueri strain DSM 11995 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter thaueri 190975 MZGS00000000.1 Bac0014353 Clostridium oryzae strain DSM 28571 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium oryzae anaerobic 1450648 MZGV00000000.1 Bac0014354 Haemophilus influenzae strain 84P15H4 N84P15H4_9_1 "Haemophilus influenzae strain 84P15H4 N84P15H4_9_1 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic metabolic capabilities, allowing it to thrive in varying oxygen conditions. This strain optimally grows at a temperature of 35.0°C, which is indicative of its adaptation to host-associated environments, such as mucosal surfaces in mammals.↵↵As a member of the genus Haemophilus, this strain is typically found in association with host organisms, suggesting a potential role in the microbiota of various animal species. The ability to grow under different oxygen tensions may confer a competitive advantage in dynamic host environments, where fluctuations in oxygen availability can occur. ↵↵The traits of H. influenzae strain 84P15H4 N84P15H4_9_1 highlight its adaptability and resilience in host-associated habitats, which could facilitate its interactions with the host immune system and other microbial inhabitants. Understanding the specific ecological niches occupied by this strain may provide insights into its potential roles in microbial community dynamics and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 727 MZHU00000000.1 Bac0014355 Clavibacter michiganensis subsp. tessellarius strain ATCC 33566 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter tessellarius 31965 MZMQ00000000.1 Bac0014356 Phyllobacterium zundukense strain Tri-38 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium zundukense 1867719 MZMT00000000.1 Bac0014357 Gilliamella apicola strain AM6 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella apicola 1196095 MZNH00000000.1 Bac0014358 Bosea sp. Tri-39 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. Tri-39 1867714 MZXT00000000.1 Bac0014359 Mycobacterium simiae strain MsiGto Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium simiae 37 mesophilic 1784 MZZM00000000.1 Bac0014360 Rhizobium phaseoli strain CCGM2 CCGM2ENTRY1000053.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium phaseoli 396 MZZP00000000.1 Bac0014361 Rhizobium grahamii strain CCGM3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium grahamii 1120045 NAAC00000000.1 Bac0014362 Geothermobacter hydrogeniphilus strain EPR-M Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geothermobacteraceae Geothermobacter Geothermobacter hydrogeniphilus 1969733 NAAD00000000.1 Bac0014363 Escherichia coli strain KCJK1770 "Escherichia coli strain KCJK1770 is a Gram-negative, rod-shaped bacterium commonly found in pairs or as single cells, adapting well to a host-associated habitat. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, suggesting its potential association with such environments. As a facultative anaerobe, KCJK1770 possesses the ability to grow in both the presence and absence of oxygen, allowing it to occupy diverse ecological niches within the host's microbiota.↵↵The ability of E. coli strains to exist in various arrangements, such as singles and pairs, may facilitate its survival and colonization within the host, enabling effective nutrient acquisition and interaction with the host's immune system. Understanding the growth conditions and cellular morphology of KCJK1770 can provide insights into its role in the complex microbial communities associated with hosts, which may influence host health and disease dynamics. Further investigation into this strain could reveal its specific interactions within the host environment, contributing to the broader understanding of E. coli's ecological versatility and its significance in microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NACG00000000.1 Bac0014364 Streptomyces sp. BF-3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. BF-3 1076450 NACZ00000000.1 Bac0014365 Candidatus Lumbricidophila eiseniae Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Candidatus Lumbricidiphila Candidatus Lumbricidiphila eiseniae 1969409 NAEP00000000.1 Bac0014366 Bradyrhizobium canariense strain UBMA182 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium canariense 255045 NAFF00000000.1 Bac0014367 Escherichia coli strain KCJK1866 "Escherichia coli strain KCJK1866 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0 degrees Celsius, a temperature commonly found in the warm-blooded hosts it associates with. As a facultative anaerobe, E. coli KCJK1866 has the metabolic flexibility to utilize oxygen when available but can also grow in its absence, allowing it to occupy a variety of host environments.↵↵The habitat of E. coli KCJK1866 is primarily host-associated, indicating its likely role in the complex microbiota of mammals, where it may participate in various biological processes. The adaptability of this strain to different oxygen conditions suggests potential interactions within the host's gut microbiome, where it could play a role in digestion or nutrient absorption.↵↵Further research into the specific ecological functions and interactions of E. coli strain KCJK1866 within its host could provide valuable insights into its contributions to host health and the maintenance of microbial balance in the gastrointestinal tract. Understanding these dynamics may also shed light on how this strain might respond to changes in the host environment, such as dietary shifts or antibiotic treatments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NAHY00000000.1 Bac0014368 Rhizobium leguminosarum bv. trifolii strain CCGM5 "Rhizobium leguminosarum bv. trifolii strain CCGM5 is a Gram-negative, rod-shaped bacterium that exists as single cells and is nonsporulating. This strain is classified as a chemoheterotroph, deriving its energy from organic compounds, and thrives in aerobic conditions, requiring oxygen for its metabolic processes. Primarily found in soil environments, R. leguminosarum bv. trifolii is known for its role in symbiotic relationships, particularly with legumes, which enhances nitrogen fixation and contributes to soil fertility.↵↵The ability of CCGM5 to inhabit soil environments suggests its potential influence on agricultural practices, particularly in promoting plant growth through nitrogen bioavailability. This strain exemplifies the intricate interactions within the soil microbiome that can enhance nutrient cycling and support sustainable farming systems. Thus, R. leguminosarum bv. trifolii strain CCGM5 not only plays a critical role in the nitrogen cycle but also underscores the importance of microbial communities in maintaining soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NAOO00000000.1 Bac0014369 Rhizobium leguminosarum bv. trifolii strain CCGM6 "Rhizobium leguminosarum bv. trifolii strain CCGM6 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells in soil environments. This strain is characterized as a nonsporulating organism, which indicates that it does not form spores as a mechanism for survival under unfavorable conditions. Instead, it relies on its status as a chemoheterotroph, obtaining energy from organic compounds in its habitat. ↵↵As an aerobe, R. leguminosarum bv. trifolii strain CCGM6 requires oxygen for its metabolic processes, which is consistent with its presence in well-aerated soil environments where organic matter is abundant. This bacterium plays a significant role in the nitrogen cycle, particularly in symbiotic relationships with leguminous plants, facilitating nitrogen fixation that enriches soil fertility. Although the specific interactions of strain CCGM6 with host plants are not detailed here, its classification within the Rhizobium genus suggests a potential for forming beneficial symbiotic associations that enhance plant growth and health.↵↵In summary, Rhizobium leguminosarum bv. trifolii strain CCGM6 exemplifies a specialized microbial adaptation to soil ecosystems, where its metabolic capabilities contribute to nutrient cycling and plant-microbe interactions, highlighting the ecological significance of soil-dwelling bacteria in agricultural systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NAOP00000000.1 Bac0014370 Bifidobacterium longum strain 1897B "Bifidobacterium longum strain 1897B is a Gram-positive, non-sporulating rod-shaped bacterium that typically exists in clusters, pairs, or as single cells. This strain is an anaerobe, thriving in oxygen-depleted environments, which aligns with its habitat as a host-associated microbe. The optimal growth temperature for B. longum strain 1897B is 37.0°C, which is indicative of its adaptation to the warm environments typically found in the gastrointestinal tracts of mammals.↵↵As a member of the Bifidobacterium genus, this strain is likely involved in various beneficial interactions within the host, contributing to gut health and potentially influencing the host's immune response. Its anaerobic nature suggests a specialized role in fermentation processes, where it may contribute to the breakdown of dietary fibers and the production of short-chain fatty acids, which are important for maintaining gut homeostasis.↵↵The presence of B. longum strain 1897B in host-associated environments underscores its potential significance in the microbiome, where it may play a role in competitive exclusion of pathogens and modulation of the gut environment. Understanding the specific interactions and benefits this strain provides in its natural habitat could reveal important insights into its function within the complex ecosystem of the human gut microbiota." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 NAQC00000000.1 Bac0014371 Bifidobacterium adolescentis strain 1892B "Bifidobacterium adolescentis strain 1892B is a Gram-positive, non-sporulating rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C and is classified as an anaerobe, indicating that it does not require oxygen for its metabolic processes. Bifidobacterium adolescentis is commonly found in host-associated environments, suggesting its significant role in the microbiota of various hosts, likely contributing to gut health and overall homeostasis.↵↵The non-sporulating nature of this strain implies that it relies on stable environments for propagation, which is consistent with its habitat within the gastrointestinal tract of mammals. The anaerobic requirement indicates that B. adolescentis strain 1892B may engage in fermentation processes, producing beneficial metabolites such as short-chain fatty acids, which are known to support gut health and influence host immune responses.↵↵This strain's adaptation to a host-associated lifestyle and its specific metabolic capabilities underscore its potential importance in symbiotic relationships within the gut microbiome, where it may play a role in nutrient absorption and the maintenance of intestinal barrier function. Understanding the characteristics of B. adolescentis strain 1892B can provide insights into its contributions to gut health and the complex interactions within the microbiome." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 NAQF00000000.1 Bac0014372 Bifidobacterium bifidum strain 1887B "Bifidobacterium bifidum strain 1887B is a Gram-positive, rod-shaped bacterium that is nonsporulating and categorized as an anaerobe, indicating its optimal growth in environments devoid of oxygen. This strain is host-associated, suggesting a symbiotic relationship with its host organism, likely contributing to the host's gut microbiota balance and overall health.↵↵The anaerobic nature of B. bifidum strain 1887B allows it to thrive in the gastrointestinal tract, where it plays a significant role in the fermentation of dietary fibers and other complex carbohydrates. This process results in the production of short-chain fatty acids (SCFAs), which are beneficial for gut health and can modulate the immune response.↵↵Furthermore, the presence of B. bifidum in the gut microbiome is associated with the maintenance of a healthy intestinal environment, potentially influencing the stability and diversity of the microbial community. Its nonsporulating characteristic suggests that it may rely on other mechanisms for survival and persistence in the host's gastrointestinal tract rather than forming spores, which is a common strategy among some other bacterial species.↵↵Overall, the ecological role of Bifidobacterium bifidum strain 1887B highlights its importance in maintaining gut health through its anaerobic metabolism and contributions to the fermentation processes that support both host nutrition and microbial community dynamics." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 NAQK00000000.1 Bac0014373 Dolosigranulum pigrum strain KPL1931_CDC4294-98 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Dolosigranulum Dolosigranulum pigrum 29394 NAQV00000000.1 Bac0014374 Gilliamella sp. A7 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. A7 1970465 NASN00000000.1 Bac0014375 Gilliamella apis strain A-TSA1 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella apis 1970738 NASO00000000.1 Bac0014376 Streptomyces sp. B9173 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces maremycinicus 1679753 NAVC00000000.1 Bac0014377 Heyndrickxia sporothermodurans strain SAD Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia sporothermodurans 46224 NAZB00000000.1 Bac0014378 Heyndrickxia sporothermodurans strain BR12 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia sporothermodurans 46224 NAZC00000000.1 Bac0014379 Escherichia coli strain 34VL "Escherichia coli strain 34VL is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which corresponds to the body temperature of warm-blooded hosts, suggesting an adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 34VL possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, which may enhance its survival and colonization in various niches within a host organism.↵↵The pairing and single arrangement of cells may influence the strain's ability to engage in specific interactions within its environment, allowing for potential advantages in nutrient acquisition and biofilm formation. Moreover, the host-associated habitat highlights the strain's potential role in the microbiota of the gastrointestinal tract, where it may contribute to complex microbial communities and perform essential functions such as fermentation or vitamin synthesis.↵↵Insights into the ecological role of E. coli strain 34VL suggest that its facultative anaerobic nature may allow it to exploit diverse metabolic pathways, facilitating its adaptability in fluctuating oxygen levels within host environments. This adaptability could be crucial for maintaining homeostasis within the host's microbiome and responding to changes in the internal ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NBCM00000000.1 Bac0014380 Bosea sp. Tri-44 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. Tri-44 1972137 NBDP00000000.1 Bac0014381 Ligilactobacillus salivarius strain AH4231 "Ligilactobacillus salivarius strain AH4231 is a Gram-positive, nonsporulating rod-shaped bacterium that demonstrates facultative anaerobic metabolism. This strain is primarily host-associated, indicating its presence in specific biological environments, likely within the gastrointestinal tracts of various hosts. The facultative anaerobic nature of L. salivarius AH4231 suggests that it can thrive in both aerobic and anaerobic conditions, which may contribute to its adaptability in diverse microbial ecosystems.↵↵Ligilactobacillus salivarius is known for its role in the fermentation of carbohydrates and the production of lactic acid, which can contribute to the maintenance of gut health and overall homeostasis. The presence of this strain in specific host-associated habitats may imply its involvement in symbiotic relationships, where it could play a critical role in digestion and nutrient absorption for its host.↵↵Additionally, the ability of Ligilactobacillus salivarius AH4231 to survive and proliferate in varying oxygen conditions may enhance its ecological fitness. This adaptability could allow it to colonize different niches within the host, potentially influencing the composition and functionality of the gut microbiota. Thus, Ligilactobacillus salivarius strain AH4231 may serve as a significant microbial player in host health, contributing to the complex interplay between host and microbiome." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NBEY00000000.1 Bac0014382 Planctomycetales bacterium 4572_13 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetales bacterium 4572_13 1971638 NBLM00000000.1 Bac0014383 Candidatus Cloacimonetes bacterium 4572_55 Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonetes bacterium 4572_55 1971726 NBMB00000000.1 Bac0014384 Spirochaetaceae bacterium 4572_59 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaetaceae bacterium 4572_59 1971727 NBMC00000000.1 Bac0014385 Gardnerella sp. DNF01162 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella sp. DNF01162 1973155 NBMX00000000.1 Bac0014386 Aeromonas hydrophila strain BSK-10 "Aeromonas hydrophila strain BSK-10 is a Gram-negative, rod-shaped bacterium that exhibits a versatile cell arrangement, forming chains, pairs, or existing as single cells. This strain thrives optimally at a temperature of 22.0°C and is classified as a facultative aerobe, allowing it to adapt to varying oxygen levels in its environment. As a heterotrophic organism, A. hydrophila strain BSK-10 relies on organic compounds as its primary energy source, which suggests its potential role in nutrient cycling within diverse habitats.↵↵The ability of this strain to exist in multiple habitats indicates its ecological plasticity, allowing it to colonize various environments ranging from freshwater systems to other aquatic niches. This adaptability may facilitate its interactions with other microbial communities and contribute to its overall ecological significance. Understanding the specific ecological roles and metabolic capabilities of A. hydrophila strain BSK-10 could provide insights into its function within its native microbiomes and its potential contributions to biogeochemical processes in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 644 NBOV00000000.1 Bac0014387 Escherichia coli strain Ec39590 "Escherichia coli strain Ec39590 is a Gram-negative, rod-shaped bacterium typically observed in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to host-associated environments. As a facultative anaerobe, E. coli strain Ec39590 has the ability to grow in both the presence and absence of oxygen, allowing it to occupy diverse niches within the host organism.↵↵The association of E. coli with host environments suggests that it may play a role in various biological processes, including nutrient metabolism and gut microbiota dynamics. Its ability to adapt to different oxygen levels further implies a versatile metabolic capacity that may be crucial for survival in fluctuating conditions encountered within the host.↵↵The characteristics of strain Ec39590 highlight its potential significance in understanding microbial interactions within host-associated ecosystems, particularly in the context of nutrient cycling and bacterial community dynamics. Further studies could elucidate the precise roles of this strain in the broader ecological network of the host's microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NBSF00000000.1 Bac0014388 Pasteurella multocida strain FDAARGOS_261 "Pasteurella multocida strain FDAARGOS_261 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. This strain has an optimal growth temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. ↵↵P. multocida is known for its association with various animal species and can be found in a range of ecological niches within host organisms. The facultative anaerobic nature of this bacterium facilitates its survival in diverse environments, including both the oxygen-rich conditions of the respiratory tract and the oxygen-poor conditions found in deeper tissue sites or within biofilms. ↵↵Understanding the specific habitat preferences of strain FDAARGOS_261 can provide insights into its ecological role and potential interactions with host immune systems. These interactions may play a significant part in the dynamics of microbial communities within host-associated environments, where P. multocida may contribute to both normal flora and, under certain circumstances, dysbiosis. Further studies on this strain could elucidate its ecological relationships and adaptive mechanisms in host-associated settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 747 NBTJ00000000.2 Bac0014389 Enterococcus faecium strain EFM1CSP "Enterococcus faecium strain EFM1CSP is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this strain is capable of growth in both aerobic and anaerobic conditions, which may provide it with a competitive advantage in the variable environment of fermented dairy products. ↵↵The presence of E. faecium in fermented mare milk suggests its role in the fermentation process, potentially contributing to flavor development and preservation of the product. This strain's ability to survive and proliferate in the milk matrix indicates its adaptation to the nutrient-rich environment provided by the fermentation of mare milk, which may be influenced by the microbial community present during fermentation.↵↵Understanding the traits of EFM1CSP not only highlights its significance within its specific ecological niche but also raises potential implications for its use in food microbiology, particularly in the production of fermented dairy products. Its adaptation strategies could be further explored to enhance fermentation processes or to study the interactions within microbial communities in dairy environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NBVQ00000000.1 Bac0014390 Pseudomonas putida strain DZ-F23 "Pseudomonas putida strain DZ-F23 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits facultative anaerobic metabolism. This strain is nonsporulating and derives its energy from heterotrophic processes, which allows it to thrive in nutrient-rich environments such as soil and wastewater. ↵↵As a member of the Pseudomonas genus, strain DZ-F23 plays a significant role in biogeochemical cycles, particularly in the degradation of organic compounds. Its adaptability to varying oxygen levels enables it to efficiently utilize available resources in diverse habitats, making it a candidate for bioremediation applications. By harnessing its metabolic capabilities, Pseudomonas putida strain DZ-F23 may contribute to the detoxification of contaminated environments, highlighting its potential ecological importance in maintaining soil health and water quality. This adaptability underscores the significance of microbial diversity in ecosystem resilience and nutrient cycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NBWA00000000.1 Bac0014391 Sediminicola luteus strain HQA918 "Sediminicola luteus strain HQA918 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. Optimal growth occurs at a temperature of 16.0°C, suggesting a preference for cooler environments, which may be indicative of its ecological niche in specific terrestrial or aquatic ecosystems. ↵↵As a member of the Sediminicola genus, this strain likely plays a role in the degradation of organic matter, contributing to nutrient cycling within its habitat. The aerobic nature of S. luteus strain HQA918 implies that it requires oxygen for growth, which may influence its distribution in environments where oxygen is readily available. ↵↵The unique combination of traits, including its temperature preference and aerobic requirement, positions Sediminicola luteus strain HQA918 as potentially significant in biogeochemical processes, particularly in cold environments where organic matter decomposition is essential for ecosystem functioning. Further investigation into its metabolic capabilities and interactions within microbial communities could provide deeper insights into its ecological role and contributions to environmental health." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Sediminicola Sediminicola luteus Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 319238 NBWU00000000.1 Bac0014392 Subtercola boreus strain K300 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Subtercola Subtercola boreus 120213 NBWZ00000000.1 Bac0014393 Subtercola boreus strain P28004 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Subtercola Subtercola boreus 120213 NBXE00000000.1 Bac0014394 Notoacmeibacter marinus strain XMTR2A4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Notoacmeibacteraceae Notoacmeibacter Notoacmeibacter marinus 1876515 NBYO00000000.1 Bac0014395 Allorhizobium ampelinum strain V80/94 "Allorhizobium ampelinum strain V80/94 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As an aerobic organism, it requires oxygen for growth and metabolism, which positions it within environments where oxygen is readily available. The habitat of this strain is notably diverse, suggesting a versatile adaptability to various ecological niches.↵↵The rod shape and single-cell arrangement of Allorhizobium ampelinum V80/94 may contribute to its survival strategies in different environments, potentially enhancing its ability to access nutrients and interact with other microorganisms. While specific ecological roles are not detailed, the ability of such bacteria to thrive in multiple habitats often points toward involvement in nutrient cycling and symbiotic relationships, particularly in association with plants.↵↵The study of Allorhizobium ampelinum strain V80/94 may provide insights into the dynamics of microbial communities in various environments and its potential interactions with plant life, possibly shedding light on its role in supporting plant growth or influencing soil health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Gillisella Gillisella ampelina Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living Singles 3025782 NBZE00000000.1 Bac0014396 Aeropyrum pernix K1 "A strictly aerobic hyperthermophilic archaeon isolated from a coastal solfataric thermal vent at Kodakara-Jima Island, Japan in 1993. It is a heterotroph that grows optimally at 90 to 95 degrees Celsius, pH 7.0, and a salinity of 3.5%. It is spherical shaped and covered by a cell envelope (S-layer-like structure). It contains C25-isopranyl archaeol (glycerol diether) as the hydrocarbon chain in the core lipid. (HAMAP: AERPE)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Aeropyrum Aeropyrum pernix K1 Cocci No 1 1 Aerobic 90 Hyperthermophilic Specialized No 272557 NC_000854.2 Bac0014397 Rickettsia prowazekii str. Madrid E "Rickettsia prowazekii is an obligate intracellular Gram negative parasite. It is the causative agent of epidemic typhus which infected 20-30 million people in the wake of the First World War and killed another few million following the Second World War. The plague of Athens in 430 BC was probably a typhus epidemic, and three million Europeans and Russians died from typhus between 1918 and 1922.Because it is the descendant of free-living organisms R. prowazekii is of interest as being possibly the closest extant relative of the ancestor to mitochondria. As an intracellular parasite in eukaryotic cells, the Rickettsia genome, like that of mitochondria, shows the effects of the evolutionary forces reducing its complexity and insight into adaptations of the obligate intracellular lifestyle.The bacterium is named after two typhus researchers who died of the disease in the early 20th century, H.T. Ricketts and S.J.M. Prowazek.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii Madrid E Negative Bacilli No 1 2 Aerobic Mesophilic HostAssociated Symbiotic Homo sapiens Nonsporulating Yes 272947 NC_000963.1 Bac0014398 Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans microaerophile 243230 NC_001263.1 Bac0014399 Methanocaldococcus jannaschii DSM 2661 "M. jannaschii was the first Archaea to have it's genome sequenced, which opened the doors for comparison between the genomes of the three domains. It was originally located from a sediment sample collected from the sea floor at the base of a ""white smoker"" chimney on the East Pacific Rise.Methanocaldococcus jannaschii was formally in the genus Methanococcus, but due to its ability to grow in high temperatures it was re-classified. There were a few thermophilic species in Methanococcus that were reorganized, and this reorganization was supported by a low 16S rRNA sequence similarity between the thermophilics and mesophilics. The species left in Methanococcus are mesophilic and are related on the genus level by close DNA reassociation levels.No difference is noted in the G + C content of thermophilics and mesophilics of Methanococcus. However, there is a difference in the proteins. The thermophilic proteins have higher residue volume, higher residue hydrophobicity, more charged amino acids, and fewer uncharged polar residues than the mesophilic proteins.This autotrophic organism is strictly anaerobic and gets it's energy by the reduction of CO2 with H2 to generate methane. In addition to it's anabolic pathway, it also contains several scavenging molecules that most likely play a role in importing small organic compounds such as amino acids. Although Methanococcus spp. have a nifH-like gene they cannot fix N2, with the exception of M. maripaludis that can.Structurally the species consist of having two bundles of flagella at the same cellular pole along with no cell membrane, but a thin S-layer covering the plasma membrane. They are cocci in shape, about 1.0 microns in diameter, and are Gram stain negative.M. jannaschii can grow in habitats with pressure up to more than 200 atm and a temperature range between 48 and 94oC, with an optimum growth temperature being 85oC.(From http://microbewiki.kenyon.edu/index.php/Methanocaldococcus) (MicrobeWiki: Methanocaldococcus)" Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii DSM 2661 Cocci No 1 1 Anaerobic 85 Lithotroph Hyperthermophilic Aquatic Free living Nonsporulating No 243232 NC_001732.1 Bac0014400 Ureaplasma parvum serovar 3 str. ATCC 700970 "Gram-negative staining, nonmotile, microaerophilic Mollicute. Round or coccobacillary shaped. Occurs predominantly in the human urogenital tract with less frequent apparitions in the mouth or respiratory tract. It is usually a commensal organism, however it can become an opportunistic pathogen. Significant cause of adverse pregnancy outcome, neonatal infections and possibly male infertility. Hydrolyzes urea with the production of ammonia. Like all mycoplasmas, Ureaplasma does not make a cell wall. (EBI Integr8)" Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma parvum ATCC 700970 Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Homo sapiens Singles Yes 273119 NC_002162.1 Bac0014401 Chlamydia pneumoniae AR39 "Chlamydia pneumoniae AR39 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C. This microbe is primarily host-associated, indicating its dependence on a living host for survival and replication. Chlamydia pneumoniae, as a species, is known to inhabit the respiratory tract of humans and other animals, suggesting a potential role in respiratory infections. The rod shape and Gram-negative classification of AR39 are characteristic of the Chlamydiaceae family, which is notable for its unique developmental cycle involving both elementary bodies and reticulate bodies.↵↵The optimal growth temperature of 37.0°C aligns with the typical physiological conditions found in warm-blooded hosts, further supporting its adaptation to a parasitic lifestyle. This temperature preference may also reflect its evolutionary adaptation to evade host immune responses and establish infection.↵↵An intriguing aspect of Chlamydia pneumoniae AR39 is its potential influence on host immune responses, as similar strains have been observed to modulate inflammatory pathways. This interaction could have implications for understanding chronic inflammatory conditions associated with respiratory diseases. Future research into the ecological dynamics of Chlamydia pneumoniae AR39 may reveal further insights into its role in host-pathogen interactions and its impact on respiratory health in diverse ecosystems." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia pneumoniae Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 115711 NC_002179.2 Bac0014402 Chlamydia muridarum str. Nigg "Chlamydia muridarum strain Nigg is a Gram-negative bacterium belonging to the genus Chlamydia. This strain is a member of the Chlamydiaceae family, characterized by its obligate intracellular lifestyle, which is typical of this genus. Chlamydia muridarum has been utilized extensively in research as a model organism for studying chlamydial infections and the biology of intracellular pathogens. ↵↵The Gram-negative nature of this microbe suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of Gram-negative bacteria. This structural characteristic may influence its interactions with host cells and immune responses, although specific details regarding its pathogenicity or host range are not provided in the traits listed.↵↵Chlamydia muridarum strain Nigg is particularly noted for its role in murine models of chlamydial infection, making it a valuable tool for investigating the pathogenesis and immune response mechanisms associated with Chlamydia species. Understanding the biology of this strain can provide insights into the complexities of host-pathogen interactions and the evolutionary adaptations that enable Chlamydia spp. to thrive within host cells.↵↵In conclusion, the study of Chlamydia muridarum strain Nigg not only enhances our comprehension of chlamydial biology but also underscores the ecological significance of intracellular bacteria and their intricate relationships with host organisms." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum negative 243161 NC_002182.1 Bac0014403 Buchnera aphidicola str. APS (Acyrthosiphon pisum) "Buchnera aphidicola subsp. Cinara cedri is the primary endosymbiont of the aphid Cinara cedri. The aphid-Buchnera association has persisted for at least 160 million years and it is obligate for both partners. Its genome is composed of a 416380-base pair circular chromosome plus a 6045-base pair plasmid for leucine. This genome is ca. 200 kilobases smaller than the other Buchnera aphidicola genomes sequenced so far. Gene loss is the main cause of genome shrinkage and affects all functional categories, although not evenly. Gene losses affecting biosynthesis of nucleotides, cofactors, cell envelope and transport are particularly important. It is no longer able to synthesize tryptophan, it is unable to provide riboflavin to its host and lacks most of the transporters encoded by other B.aphidicola genomes. Buchnera aphidicola subsp. Cinara cedri could be undergoing a process of genome degradation and functional replacement by the coexisting secondary endosymbiont Serratia symbiotica. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Buchnera Buchnera aphidicola APS Negative Mesophilic HostAssociated Symbiotic Acyrthosiphon kondoi Singles No 107806 NC_002252.1 Bac0014404 Mycobacterium leprae TN "Both leprosy and tuberculosis, caused by Mycobacterium leprae and Mycobacterium tuberculosis respectively, have seriously plagued mankind for centuries. With the emergence of antibiotic resistant strains of tuberculosis, research into mycobacteria has become all the more important in combating these modern mutants of ancient pathogens.Both the genomes of Mycobacterium tuberculosis and Mycobacterium leprae have been sequenced with hopes of gaining further understanding of how to defeat the infamously successful pathogens. The genome of M. tuberculosis is 4,411,522 base pairs long with 3,924 predicted protein-coding sequences, and a relatively high G+C content of 65.6%. At 4.4 Mbp, M. tuberculosis is one of the largest known bacterial genomes, coming in just short of E. coli, and a distant third to Streptomyces coelicolor.The genome of Mycobacterium leprae is 3,268,203 base pairs long, with only 1,604 predicted protein-coding regions, and a G+C content of about 57.8%. Only 49.5% of the M. leprae genome contains open reading frames (protein-coding regions), the rest of the genome is comprised of pseudogenes, which are inactive reading frames with recognizable and functional counterparts in M. tuberculosis (27%), and regions that do not appear to be coding at all, and may be gene remnants mutated beyond recognition (23.5%). Of the genome of M. tuberculosis, 90.8% of the genome contains protein-coding sequences with only 6 pseudogenes, compared to the 1,116 pseudogenes on the M. leprae genome.Operating on the assumption that M. leprae was once approximately the size of other mycobacteria, it has significantly downsized and degraded to its current state. If all the genes on the M. leprae genome were active, it would have about 3,000 open reading frames, compared to the 4,000 proteins of M. tuberculosis. Total, over its evolutionary history, M. leprae has lost more than 2,000 genes.Mycobacteria are rod-shaped, Gram-positive aerobes, or facultative anaerobes. As deduced from its genome, M. tuberculosis has the potential to manufacture all of the machinery necessary to synthesize all of its essential vitamins, amino acids, and enzyme co-factors. On the other hand, the inability to culture M. leprae, suggests that it has lost many of its metabolic capabilities, and is now an obligate parasite, dependent on its host for most of its nutritional needs. This goes in accordance with its severely degenerated genome. M. tuberculosis has an unusual cell wall, with an additional layer beyond the peptodiglycan layer, which is rich in unusual lipids, glycolipids, and polysaccharides.It is thought that the more well-known infectious agents such as M. tuberculosis and M. leprae are evolved from a soil bacterium. More specifically, M. tuberculosis arose from a soil bacterium that evolved to infect cows, and then made the jump to humans about the time of animal domestication about 10,000 years ago. M. tuberculosis and M. leprae both grow remarkably slow for bacteria. M. tuberculosis doubles its population every 18-24 hours, while M. leprae doubles its population about every 14 days. This extremely long generation time probably contributes to the chronic nature of both diseases.Both leprosy and tuberculosis, caused by M. leprae and M. tuberculosis respectively, are considered chronic pathogens, causing diseases that takes months, sometimes years, to develop, and, without treatment, eventually result in a slow and excruciatingly painful death. Two of the oldest recognized pathogens, tuberculosis and leprosy have been plaguing mankind since the first stages of domestication some 10,000 years ago. Most mycobacteria do not cause disease, so M. tuberculosis and M. leprae are hardly typical of the genus, and are consequently called 'wayward sons of honorable parents.' In recent years, with the ushering in of the antibiotic age, when penicillin is used to treat everything, new, drug-resistant forms of these pathogens have begun to emerge allowing both diseases to become serious threats to humanity once again. In 1993 with rates of reported cases of tuberculosis on the rise, the World Health Organization declared it a global emergency and began to make efforts to heighten public awareness.In addition to an increase in people contracting tuberculosis, it has formed a deadly partnership with the AIDS virus. The two diseases feed off of each other. With the depleted immune system caused by AIDS comes increased susceptibility to tuberculosis, which in turn accelerates the progress of AIDS.Tuberculosis sets up camp in the lungs of its host, where it, for the most part, coexists with its host while lazily following its daily division routine, yet causing no outward symptoms, but rather just accumulating numbers in order to launch its assault on its unsuspecting host. Macrophages that normally ingest pathogens in order to destroy them, are made into a cozy home by the tubercle bacillus. Tubercolosis is transmitted from person to person through the air, and requires a six to twelve month regimen of at least two drugs to rid its host of the infection. Drug-resistant strains of the pathogen are mainly the result of patients not following directions in the taking of their medication, and thus do not kill off the disease entirely.Leprosy, popularly thought to be a disease of the past, has over 690,000 new cases reported annually, but the mode of transmission still remains a mystery. The infection is very slow to develop, taking anywhere from six months to ten years. Leprosy is a neurological disease, that mainly accumulates in the extremities, and inhabits macrophages through which it infects the Schwann cells of the peripheral nervous system. The lack of myelin produced by the infected Schwann cells leads to nerve damage, and sensory loss. There are two forms of leprosy, tuberculin and lepromatous. Lepromatous leprosy is the more contagious form, in which the body is unable to mount a resistance, and the bacterium freely multiplies in the skin, causing nodules to appear all over the body and face. It also infects the mucous membranes of the nose and throat, creating a rather disturbing physique. Tuberculin leprosy causes an immune defense in which the body's cells crowd around the invading organisms in the deep skin layers, which causes hair follicles, sweat glands, and nerve endings at the site to be destroyed. The skin then becomes dry and discolored and loses feeling. This most often affects the fingers and toes which are now fragile and injury prone, and often become mutilated and fall off. (From http://microbewiki.kenyon.edu/index.php/Mycobacterium) (MicrobeWiki: Mycobacterium)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium leprae TN Positive Bacilli No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 272631 NC_002677.1 Bac0014405 Mesorhizobium japonicum MAFF 303099 "Mesorhizobium japonicum MAFF 303099 is a Gram-negative, rod-shaped bacterium known for its role in symbiotic nitrogen fixation in leguminous plants. As an aerobic organism, it thrives in environments where oxygen is readily available, which aligns with its metabolic requirements for growth and activity. This strain has been isolated from diverse habitats, demonstrating its adaptability to various environmental conditions. ↵↵M. japonicum is particularly significant in agricultural contexts due to its ability to form root nodules in association with soybean plants, facilitating the conversion of atmospheric nitrogen into a form that is accessible to the host. This not only enhances the nutrient availability for the plants but also contributes to soil fertility and sustainability in agricultural practices. ↵↵The ability of M. japonicum MAFF 303099 to inhabit multiple environments suggests a robust physiological capacity that may allow it to withstand varying soil conditions and compete effectively for resources with other microbial communities. Understanding its traits and ecological interactions could provide insights into improving crop yields and developing sustainable agricultural systems, particularly in nitrogen-deficient soils." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium japonicum Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 266835 NC_002679.1 Bac0014406 Thermoplasma volcanium GSS1 "A thermoacidophilic archaeon, Thermoplasma is a fascinating microorganism whose study can give new insight into how extremophiles can live in such conditions missing some of the generic cell structure that other thermophilic's have. Protease and chaperone assemblies from Thermoplasma have helped illuminate the structure and function of their more complex eukaryotic homologues.The T. acidophilum genome consists of a single circular chromosome of 1,564,906 bp. No plasmids were detected through biochemical methods or DNA sequencing, but a 15.2kbp has previously been reported in other isolates. The genome for T. volcanium is composed of 1,584,804 bp. There has been apparent lateral gene transfer between T. acidophilum and Sulfolobus solfataricus mainly including protein degradation pathways and various transport proteins. These two microorganisms are phylogenetically distant with S. sulfolobus being a crenarchaeon, but they do share the same living environment. While Thermoplasma may share around 252 open reading frames (17%) with Sulfolobus, but surprisingly, no homologues of the genes that mediate sulphur respiration in Archaeoglobus (a fellow archaeon) were found. Instead, homologues of genes that mediate dissimilatory sulphur reduction in Salmonella typhimurium were present. Thermoplasma also contain proteins not present in other archaeal genome including Hta, an archaeal DNA-binding protein that is closely related to bacterial proteins and appear to substitute functionally for the missing histones.Thermoplasma live in extreme environments without a protective outer layer (S-layer, cell wall) and survive with only a plasma membrane. Not to mention they retain a near neutral cytoplasm. They have flagella and are motile, although it is unclear what structure can function as the stator for flagellar rotation. Thermoplasma can metabolize like Sulfolobus through glucose degradation which eventually leads to the TCA cycle. Thermoplasma contain several respiratory chain proteins such as electron transfer flavoproteins and cytochrome b homologues. They are also able to gain energy anaerobically, however, by sulfur respiration.Environments that have characteristics including a pH level between 0.5 - 4.0 with temperatures ranging from 55-60oC are where you can find Thermophiles. Optimum growth conditions are about pH 2 and 60oC. Strands have been isolated from self-heating coal refuse piles and solfatara fields. (From http://microbewiki.kenyon.edu/index.php/Thermoplasma) (MicrobeWiki: Thermoplasma)" Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmataceae Thermoplasma Thermoplasma volcanium GSS1 Negative Bacilli No 1 1 Facultative 60 Thermophilic Specialized Free living Nonsporulating No 273116 NC_002689.2 Bac0014407 Bordetella parapertussis 12822 Bordetella parapertussis infects both sheep and humans. In human infants it causes whooping cough. (HAMAP: BORPA) Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella parapertussis 12822 Negative Bacilli 1 2 Aerobic 35 Mesophilic HostAssociated Yes 257311 NC_002928.3 Bac0014408 Chlorobaculum tepidum TLS Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum phototroph 194439 NC_002932.3 Bac0014409 Corynebacterium diphtheriae NCTC 13129 "Bacteria from genus Corynebacterium are Gram-positive, nonmotile rods. C.diphtheriae produces the diphtheria toxin, which is usually encoded by a bacteriphage or by an integrated prophage as in this strain. Diphtheria is an acute disease that usually affects the tonsils, throat, nose and/or skin. It is passed from person to person by droplet transmission, usually by breathing in diphtheria bacteria after an infected person has coughed or sneezed. It can lead to breathing problems, heart failure, paralysis and sometimes death. (HAMAP: CORDI)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae NCTC 13129 Positive Rod No 1 1 Aerobe 37 Mesophilic Multiple Yes 257309 NC_002935.2 Bac0014410 [Haemophilus] ducreyi 35000HP Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus [Haemophilus] ducreyi 233412 NC_002940.2 Bac0014411 Porphyromonas gingivalis W83 "Porphyromonas gingivalis is a Gram-negative, anaerobic pathogenic oral bacterium and is a major etiological agent in the initiation and progression of severe forms of periodontal disease.An opportunistic pathogen, P. gingivalis can exist harmoniously with the host, with disease episodes ensuing from a shift in the ecological balance within the periodontal microenvironment.Colonisation of the subgingival region is facilitated by the ability of P. gingivalis to adhere to available substrates such as adsorbed salivary molecules, matrix proteins, epithelial cells, and bacteria that are already established as a biofilm on tooth and epithelial surfaces.Whole-genome comparative analysis with other available complete genome sequences confirms the close relationship between the Cytophaga-Flavobacteria-Bacteroides (CFB) phylum and the green-sulfur bacteria. Within the CFB phyla, the genomes most similar to that of P. gingivalis are those of Bacteroides thetaiotaomicron and B. fragilis. Outside of the CFB phyla the most similar genome to P. gingivalis is that of Chlorobium tepidum, supporting the previous phylogenetic studies that indicated that the Chlorobia and CFB phyla are related, albeit distantly.Genome analysis also reveals that P. gingivalis can metabolize a range of amino acids and generate a number of metabolic end products that are toxic to the human host or human gingival tissue and contribute to the development of periodontal disease.Although periodontal disease is localised to the tissues surrounding the tooth, evidence is accumulating that infection with P. gingivalis may predispose to more serious systemic conditions such as cardiovascular disease and to delivery of preterm infants.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis W83 Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 242619 NC_002950.2 Bac0014412 Coxiella burnetii RSA 493 "Coxiella burnetii is an obligate intracellular, Gram-negative bacterium that replicates within the phagolysosome of the eukaryotic phagocyte. It is the etiological agent of ""Q (Query) fever"". It is highly infective to both humans and livestock, growing to high titer in livestock placental tissues. Thus natural infection mostly results from exposure to dust or aerosol from ruminant birth fluids. In humans, the disease manifests as an acute flu-like illness. The bacteria are found as 2 particles, both of which are infectious. The small cell variants (SCV), are responsible for the ability to survive extreme environmental conditions of desiccation, heat, sonication, and pressure. In the host, the infecting SCV develop into large cell variants (LCV) that are metabolically active. The SCV and LCV are antigenically different, but do not correspond to stationary and log-phase growth stages as has been hypothesized. Transition between SCV and LCV is accompanied by changes in the expression of surface proteins and does not involve changes in lipopolysaccharide (LPS) structure. Infectious particles have been referred to as ""endospore-like"", but this nomenclature is misleading because they are not structurally similar to Bacillus spores. C.burnetii (SCV form) is able to survive outside the host in soil for extended periods of time. It shows high-level resistance to UV radiation, heat, dessication, pressure and osmotic and oxidative stress. It has already been weaponized and mass-produced under various biological warfare programs (adapted in part from PubMed: 17825460).The G isolate (Q212) was acquired in Nova Scotia, Canada, in 1982 from the aortic valve of a human endocarditis patient. It disseminates less and causes less inflammatory damage than the Nine Mile isolate (COXBU) following aerosol challenge of BALB/c mice. This strain has plasmid-like sequences integrated into its chromosome. Comparison with 3 other strains, Nine Mile, Dugway and CbuK_Q154 (COBXU, COXBN and COXB1, respectively) identified very few novel genes in each isolate, in agreement with the organism's obligate intracellular lifestyle that limits opportunities for genetic exchange. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Coxiellaceae Coxiella Coxiella burnetii RSA 493 Negative Cocci Yes 1 2 Facultative 37 Mesophilic HostAssociated Symbiotic Homo sapiens Singles Sporulating Yes 227377 NC_002971.4 Bac0014413 Methylococcus capsulatus str. Bath "Obligate, Gram-negative methanotroph. Methanotrophs are responsible for the oxidation of biologically generated methane and therefore help reduce the amount of this greenhouse gas that is released to Earth's atmosphere. The conversion of methane to biomass by M. capsulatus has been exploited for large-scale commercial production of microbial proteins by fermentation.(From http://www.expasy.org/sprot/hamap/METCA.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylococcus Methylococcus capsulatus Bath Negative Cocci No 1 2 Aerobic 45 Methanotroph Thermophilic Multiple Free living No 243233 NC_002977.6 Bac0014414 Wolbachia endosymbiont of Drosophila melanogaster "Wolbachia endosymbiont of Drosophila melanogaster. Wolbachia endosymbiont of Drosophila melanogaster, also known as Wolbachia pipentis strain wMel, naturally infects Drosophila melanogaster and is a member of supergroup A. The genome contains a large number of repetitive elements as well as proteins with ankyrin repeats that may be important in bacterium-host interactions. The chromosome also contains genes that encode a type IV secretion system. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Drosophila melanogaster Negative Bacilli Aerobic Mesophilic HostAssociated Symbiotic Yes 163164 NC_002978.6 Bac0014415 Streptococcus pneumoniae TIGR4 "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae TIGR4 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Homo sapiens Chains - Pairs Nonsporulating Yes 170187 NC_003028.3 Bac0014416 Rickettsia conorii str. Malish 7 "Rickettsia are obligate intracellular bacteria normally living in arthropod cells. They occasionally cause diseases in humans. R. conorii is the agent of Mediterranean spotted fever, which is transmitted by brown dog ticks.The bacterium is closely related to R. prowazekii, which causes typhus. Both bacteria are parasites with a relatively small genome, in part because they tend to inactivate their own genes when they can make use of genes from their host. The R. conorii genome has 1.3 million base pairs and 1,374 genes, slightly more than its cousin. The overlap for parts of the genomes is striking: All but thirty genes from a set of 834 in R. prowazekii have counterparts in R. conorii.R. conorii requires an arthropod (insect) vector for transmission. Transovarian transmission of the pathogen from one generation of insect to the next is important in many rickettsial diseases. From the portal of entry in the skin, rickettsiae spread via the bloodstream to infect the endothelium and sometimes the vascular smooth muscle cells. Common symptons of disease in humans include nausea, vomiting, abdominal pain, encephalitis, hypotension, acute renal failure, and respiratory distress.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia conorii Malish 7 Negative Bacilli No 1 2 Aerobic Mesophilic HostAssociated Symbiotic Homo sapiens Nonsporulating Yes 272944 NC_003103.1 Bac0014417 Streptomyces avermitilis MA-4680 = NBRC 14893 "Streptomyces avermitilis MA-4680 (also known as NBRC 14893) is a Gram-positive, tailed bacterium characterized by its ability to sporulate, which facilitates its survival in various environments. This microbe thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolism, indicating a reliance on oxygen for its respiratory processes. ↵↵Streptomyces species, including S. avermitilis, are often found in diverse habitats, which may include soil and decaying organic matter, where they play a vital role in nutrient cycling and organic decomposition. The sporulation capability of S. avermitilis further enhances its ecological adaptability, allowing it to endure unfavorable conditions and contribute to the microbial diversity in its surroundings.↵↵This bacterium is particularly notable for its production of avermectins, a class of antiparasitic agents, highlighting its potential applications in agriculture and medicine. The ecological roles of Streptomyces species, such as their interactions with soil microorganisms and contribution to the soil ecosystem, underscore their importance in maintaining soil health and promoting plant growth. Thus, S. avermitilis serves as a key player in both microbial ecology and biotechnological applications, exemplifying the intricate connections between microbial diversity and ecosystem functionality." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces avermitilis Positive Tailed Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Sporulating 227882 NC_003155.5 Bac0014418 Listeria monocytogenes EGD-e "Listeria are mainly soil bacteria, though as a pathogen they are food-borne. They are intracellular pathogens that use actin filaments within the host cell for their motility. L. monocytogenes is the causative agent of listeriosis.The genomes of both Listeria monocytogenes and Listeria innocua have been sequenced. The genome of Listeria monocytogenes is 2,944,528 bp long with 2853 open reading frames and a G+C content of 39%. The genome of Listeria innocua is 3,011,209 bp long with 2973 open reading frames and a G+C content of 37%. Surprisingly, many encoded proteins are similar to those of the soil bacterium Bacillus subtilis. L. monocytogenes has a single circular chromosome, while L. innocua contains an additional plasmid of 81,905 bp.The ability of Listeria to inhabit a wide range of environments coincides with the presence of 331 genes encoding different transport proteins, comprising 11.6% of the total gene compliment of L. monocytogenes. Listeria also has an extensive regulatory repertoire occupying 7.3% of the total genome.Listeria are non spore-forming, nonbranching, Gram-positive rods that occur individually or form short chains. Listeria are able to produce adenosine triphosphate thorugh a complete respiratory chain, and have several fermentation pathways. This coincides with their lifestyle as microaerophilic, facultative anaerobes. Listeria are intecellular pathogens that use host-produced actin filaments for motility within the host cell. The bacteria propel themselves through the cytoplasm of an infected cell using a tail composed of actin.Listeria colonies are small, smooth and blueish-gray. Their optimum growth temperature is between 30 and 37 degrees Celsius, but growth can occur at temperatures as low as 4 degrees Celsius, but the generation time is longer. Listeria is widely distributed throughout the environment, inhabiting soil, decaying vegetable matter, sewage, water, animal feed, fresh and frozen poultry, processed meats, raw milk, cheese, and humans. But primary habitats are considered to be soil and decaying vegetable matter, living as a saprophyte. Listeria can also survive in many extreme conditions that it encounters during its lifespan, such as high salt concentrations, high pH, and high temperature. Both pathogenic and innocuous forms of listeria have this ability. Listeria spp. also form biofilms, which allow them to attach to solid surfaces where they proliferate and become extremely difficult to remove.Listeria monocytogenes is the etiological agent of listeriosis. L. monocytogenes is a food-borne pathogen, which, as mentioned earlier, can survive normal refrigeration processes. It can cause severe disease in immunocompromised individuals, and pregnant women. Listeria is an intracellular pathogen where they co-opt the cell's machinery, and travel through the blood stream, once they make it through the gastrointestinal tract. After ingestion of contaminated food, Listeria migrates from the intestinal lumen to the central nervous system, and the fetoplacental unit. The clinical manifestations of listeriosis include meningitis, meningoencephalitis, septicemia, abortion, perinatal infection, and gastroenteritis. Listeria is capable of infecting macrophages, which aquire the pathogen through phagocytosis, or epithelial cells, which are infected when listeria induces cytoskeletal changes and plasma membrane extensions. (From http://microbewiki.kenyon.edu/index.php/Listeria) (MicrobeWiki: Listeria)" Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes EGD-e Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles Nonsporulating Yes 169963 NC_003210.1 Bac0014419 Bacteroides fragilis NCTC 9343 "Bacteroides fragilis is a Gram-negative rod, which represents a large part of the colonic bacteria flora. It is an opportunistic pathogen that can severely limit the success of gastro-intestinal surgery, and is frequently associated with extraintestinal infections such as abscesses and soft tissue infections, as well as diarrheal diseases in animals and humans. (Partially extracted from Karyn's Genomes-EBI). The strain ATCC 25285 / NCTC 9343 was originally isolated from an abdominal infection at St Bartholomew's Hospital, London in 1955. (EBI Integr8)" Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis ATCC 25285 Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Yes 272559 NC_003228.3 Bac0014420 Pyrobaculum aerophilum str. IM2 P.aerophilum is a facultatively aerobic nitrate-reducing hyperthermophilic crenarchaeon. It was isolated from a boiling marine water hole at Maronti beach in Italy. (HAMAP: PYRAE) Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum IM2 NA Rod No 1 1 Aerobe; anaerobe 100 Hyperthermophilic Aquatic No 178306 NC_003364.1 Bac0014421 Pyrococcus furiosus DSM 3638 "Pyrococcus has similar characteristics of other archaea such as Archaeoglobus, thermoautotrophican, and Methanococcus in its that they are all thermophilic and anaerobic. Pyrococcus differs, however, because it's optimal growth temperature is nearly 100oC and dwells at a greater sea depth than the other archaeons. Studying Pyrococcus helps give insight to possible mechanisms used to endure extreme environmental conditions like high temperatures and high pressure.The cells of Pyrococcus are about 0.8- 2um and are slightly irregular cocci in shape. They show a polar grouping of flagella and are enveloped by an S-layer enclosing a periplasmic space around the cytoplasmic membrane. Pyrococcus species are anaerobic but vary slightly concerning their metabolism. Peptide fermentation is the principle metabolic pathway however, growth has been observed for P. furiosus and P. abyssi on starch, maltose, and pyruvate but not for P. horikoshii. While the presence of elemental sulfur is not needed for growth, growth is enhanced with the addition of So.Pyrococcus species inhabit environments with extremely high temperatures such as undersea hot vents. Optimal growth conditions include a pH level of about 7, a salt concentration around 2.5%, and a temperature around 98oC. Growing in temperatures this high, it is easy to see why they are anaerobic since at these boiling temperatures hardly any oxygen will be available. In the example of undersea hot vents, where P. abyssi has been found, there is no sunlight and the pressure is around 200 atm in addition to the extremely high temperature. (From http://microbewiki.kenyon.edu/index.php/Pyrococcus) (MicrobeWiki: Pyrococcus)" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus DSM 3638 Cocci No 1 1 Anaerobic 100 Hyperthermophilic Aquatic Free living Nonsporulating No 186497 NC_003413.1 Bac0014422 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Wigglesworthia brevipalpis lives inside the gut of the blood-sucking tsetse fly. The bacterium and fly live in symbiosis. The bacterium has genes involved in the synthesis of vitamins. Without the bacteria and vitamins the tsetse fly is sterile. (HAMAP: WIGBR) Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Wigglesworthia Wigglesworthia glossinidia Negative 1 0 0 Mesophilic HostAssociated No 36870 NC_003425.1 Bac0014423 Corynebacterium glutamicum ATCC 13032 "Coryneform bacteria are rod-shaped, fast growing, non-sporulating Gram-positive bacteria that enjoy widespread distribution. One of the non-pathogenic species of coryneform bacteria, Corynebacterium glutamicum, was discovered in the 1950s in Japan as natural producer of glutamic acid. It is now produced by direct fermentation used for industrial production of amino acids which are used as flavour enhancers in food.Corynebacterium glutamicum is of high industrial interest as a research object because it is used by the chemical industry for the biotechnological production of the amino acid lysine. The substance is employed as a source of protein in animal nutrition. Lysine is one of the essential amino acids in animal nutrition. Biotechnologically produced lysine is added to feed concentrates as a source of protein, and is an alternative to soybeans or meat and bonemeal. In 2000, more than 450,000 metric tons of lysine were sold worldwide, representing a value of about 660 million Euros. (From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum ATCC 13032 Positive Bacilli No 1 1 Facultative 30 Chemoorganotroph Mesophilic Multiple Free living Singles Nonsporulating No 196627 NC_003450.3 Bac0014424 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 "Fusobacterium nucleatum, is an anaerobic Gram-negative non-sporeforming oral bacterium found in the normal flora of the mouth, that plays a role in periodontal disease.The cells of F. nucleatum are spindle-shaped or fusiform rods of variable length. All strains obtain energy from the fermentation of sugars or amino acids, and produce butyric acid as a major metabolic by-product.Although F. nucleatum is not considered a major dental pathogen on its own, it can adhere to a wide range of other plague organisms, such as Porphyromonas gingivalis, and contribute to the development of periodontitis as well as invasive human infections of the head and neck, chest, lung, liver and abdomen. (From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum ATCC 25586 Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 190304 NC_003454.1 Bac0014425 Methanopyrus kandleri AV19 "M. kandleri is rod shaped, has a width of 0.5um and a length of 2-14um, and is a Gram positive archaeon that grows chemolithoautotrophically. It has flagella that are found in polar tufts as well as a terpenoid lipid membrane, which is considered the most primitive lipid membrane, which retains a high intracellular concentration of a trivalent anion, cyclic 2,3-diphosphoglycerate. This anion has been found to confer activity and stability at high temperatures on enzymes found in the organism.This organism grows at 80-100oC in an H2-CO2 atmosphere. Methanopyrus kandleri has been located at the base of a 2,000 m deep ""black smoker"" chimney on the sea floor in the Gulf of California.The genome of M. kandleri consists of a single circular chromosome with 1,694,969 bp. This organism is believed to have had little gene transfer with bacteria and encodes the core proteins that are conserved in other Euryarchaea. It also closely resembles other archaeal methanogens in relation to gene content and local gene order. (From http://microbewiki.kenyon.edu/index.php/Methanopyrus) (MicrobeWiki: Methanopyrus)" Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri AV19 Bacilli No 1 Anaerobic 98 Lithotroph Hyperthermophilic Specialized Free living Nonsporulating No 190192 NC_003551.1 Bac0014426 Methanosarcina acetivorans C2A "Methanosarcina spp. are anaerobic methanogens that can form multicellular colonies. They can be found in a multitude of environments including the rumen in cows, sheep, goats, deer, ect. and the large intestine in humans. There has been recent study on M. barkeri because evidence of a 22nd amino acid named pyrrolysine has been detected. This protein was located in the active site of the enzyme methogenic methylamine methyltransferase, which catabolizes methylamines leading to methane production.Clearly containing the largest archaeal genome (4th largest of Prokaryotes) with 5,751,492 bp, M. acetivorans these genes for a multitude of different properties not shown by other archaeons. Another sequenced species, M. mazei also has a large genome in relation to other archaeons with 4,096,345 bp. An interesting discovery in the M. acetivorans genome was the presence of chaperonins GroEL/GroES that were believed to occur only in bacteria and eukaryotic cell organelles of bacterial ancestry. Three other main chaperoning systems were discovered as well. A pivotal question is then did M. acetivorans receive the genes by inheritance or by lateral transfer from a bacterium, which was suggested for M. mazei. The answer could dictate whether the common ancestor had these genes or whether they were a bacterial product that have been transferred.All the other methanogens can utilize no more than two methanogenic substrates and possess a single pathway for methanogenesis. Methanosarcina, on the other hand, has all three known pathways for methanogenesis and can utilize no less than nine methanogenic substrates. M. barkeri and M. mazei are autotrophic, but M. acetivorans is not.It also has a number of distinct morphological forms including single cells with and without a cell envelope, as well as multicellular packets and lamina. The packets and lamina showed internal morphological diversity, indicating possible cell differentiation. The fact that cells in the lamina secrete different extracellular material gives light to possible cell specialization as well. They are coccoid and have cell walls of protein, often having an external wall of a heteropolysaccharide. Most Methanosarcina spp. are surrounded by a polymeric network of methanochondroitin that is external to an S-layer. The term ""matrix"" has been proposed to describe this structure. It has been demonstrated by Xun et al. (1990, as cited in Ferry p.89) that the methanochondroitin causes cell-cell adhesion.(From http://microbewiki.kenyon.edu/index.php/Methanosarcina) (MicrobeWiki: Methanosarcina)" Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina acetivorans C2A Cocci No 1 1 Anaerobic 35 Lithotroph Mesophilic Aquatic Free living Nonsporulating No 188937 NC_003552.1 Bac0014427 Caldanaerobacter subterraneus subsp. tengcongensis MB4 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Caldanaerobacter Caldanaerobacter subterraneus No 1 Anaerobic Chemoheterotroph Thermophilic Multiple Nonsporulating 273068 NC_003869.1 Bac0014428 Methanosarcina mazei Go1 "Methanosarcina spp. are anaerobic methanogens that can form multicellular colonies. They can be found in a multitude of environments including the rumen in cows, sheep, goats, deer, ect. and the large intestine in humans. There has been recent study on M. barkeri because evidence of a 22nd amino acid named pyrrolysine has been detected. This protein was located in the active site of the enzyme methogenic methylamine methyltransferase, which catabolizes methylamines leading to methane production.Clearly containing the largest archaeal genome (4th largest of Prokaryotes) with 5,751,492 bp, M. acetivorans these genes for a multitude of different properties not shown by other archaeons. Another sequenced species, M. mazei also has a large genome in relation to other archaeons with 4,096,345 bp. An interesting discovery in the M. acetivorans genome was the presence of chaperonins GroEL/GroES that were believed to occur only in bacteria and eukaryotic cell organelles of bacterial ancestry. Three other main chaperoning systems were discovered as well. A pivotal question is then did M. acetivorans receive the genes by inheritance or by lateral transfer from a bacterium, which was suggested for M. mazei. The answer could dictate whether the common ancestor had these genes or whether they were a bacterial product that have been transferred.All the other methanogens can utilize no more than two methanogenic substrates and possess a single pathway for methanogenesis. Methanosarcina, on the other hand, has all three known pathways for methanogenesis and can utilize no less than nine methanogenic substrates. M. barkeri and M. mazei are autotrophic, but M. acetivorans is not.It also has a number of distinct morphological forms including single cells with and without a cell envelope, as well as multicellular packets and lamina. The packets and lamina showed internal morphological diversity, indicating possible cell differentiation. The fact that cells in the lamina secrete different extracellular material gives light to possible cell specialization as well. They are coccoid and have cell walls of protein, often having an external wall of a heteropolysaccharide. Most Methanosarcina spp. are surrounded by a polymeric network of methanochondroitin that is external to an S-layer. The term ""matrix"" has been proposed to describe this structure. It has been demonstrated by Xun et al. (1990, as cited in Ferry p.89) that the methanochondroitin causes cell-cell adhesion.(From http://microbewiki.kenyon.edu/index.php/Methanosarcina) (MicrobeWiki: Methanosarcina)" Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Go1 Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating No 192952 NC_003901.1 Bac0014429 Bacillus cereus ATCC 10987 "Bacillus cereus is a Gram-positive, spore-forming bacterium of the B.cereus group. It is closely related to Bacillus anthracis and Bacillus thuringiensis. Bacillus cereus is a ubiquitous soil organism and opportunistic human pathogen most commonly associated with food poisoning, causing diarrheic (late onset) or emetic (quick onset) outbreaks. Strain 03BB102 was cultured from the blood of a 39 year old San Antonio, Texas welder who died as a result of a severe pneumonia thought to be caused by this microbe. Unlike B. anthracis, the isolate is hemolytic, motile and resistant to gamma phage. However, it is positive for a DFA-based cell wall test for B. anthracis, and it has all or most of the pXO1 pathogenicity island sequences including the sequences for pag, cya and lef. It is negative for the B. anthracis capsule formation genes but still has a capsule, presumably encoded by its own capsule genes. It was not determined whether any of these genes were expressed during the infection but the severe pneumonia of which the individual died was never mistaken for an anthrax infection. The genome of Bacillus cereus 03BB102 will provide information on the potential pathogenicity and genetic variability of this organism (adapted from http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=31307). (HAMAP: BACC3)" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus ATCC 10987 Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Homo sapiens Chains Sporulating Yes 222523 NC_003909.8 Bac0014430 Ruegeria pomeroyi DSS-3 "Ruegeria pomeroyi strain DSS-3. Formerly Silicibacter pomeroyi, his marine bacterium is a member of the Roseobacter clade and was isolated off of the coast of Georgia in 1998. DSS-3 is the type strain for this species. Analysis will provide insight into sulfur cycling by microbes in marine environments. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria pomeroyi DSS-3 Negative Bacilli Yes Aerobic Heterotroph Mesophilic Aquatic Free living 246200 NC_003911.12 Bac0014431 Xanthomonas citri pv. citri str. 306 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri fruit surfaces; leaf surface; leaf surfaces 346 NC_003919.1 Bac0014432 Rhizobium etli CFN 42 "Rhizobium etli, a soil-dwelling, symbiotic nitrogen-fixing bacterium, is the main nodulator of Phaseolus vulgaris, the common bean. It contains one chromosome and 6 large plasmids, which contribute approximately one third of the genome. This strain is of considerable agronomic importance. (HAMAP: RHIEC)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli CFN42 Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Phaseolus vulgaris Singles Nonsporulating No 347834 NC_004041.2 Bac0014433 Buchnera aphidicola str. Sg (Schizaphis graminum) "Buchnera aphidicola subsp. Cinara cedri is the primary endosymbiont of the aphid Cinara cedri. The aphid-Buchnera association has persisted for at least 160 million years and it is obligate for both partners. Its genome is composed of a 416380-base pair circular chromosome plus a 6045-base pair plasmid for leucine. This genome is ca. 200 kilobases smaller than the other Buchnera aphidicola genomes sequenced so far. Gene loss is the main cause of genome shrinkage and affects all functional categories, although not evenly. Gene losses affecting biosynthesis of nucleotides, cofactors, cell envelope and transport are particularly important. It is no longer able to synthesize tryptophan, it is unable to provide riboflavin to its host and lacks most of the transporters encoded by other B.aphidicola genomes. Buchnera aphidicola subsp. Cinara cedri could be undergoing a process of genome degradation and functional replacement by the coexisting secondary endosymbiont Serratia symbiotica. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Buchnera Buchnera aphidicola Sg Negative Mesophilic HostAssociated Symbiotic Acyrthosiphon kondoi Singles No 198804 NC_004061.1 Bac0014434 Streptococcus pyogenes MGAS315 "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes MGAS315 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 198466 NC_004070.1 Bac0014435 Streptococcus agalactiae NEM316 "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae NEM316 Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 211110 NC_004368.1 Bac0014436 Buchnera aphidicola str. Bp (Baizongia pistaciae) "Buchnera aphidicola subsp. Cinara cedri is the primary endosymbiont of the aphid Cinara cedri. The aphid-Buchnera association has persisted for at least 160 million years and it is obligate for both partners. Its genome is composed of a 416380-base pair circular chromosome plus a 6045-base pair plasmid for leucine. This genome is ca. 200 kilobases smaller than the other Buchnera aphidicola genomes sequenced so far. Gene loss is the main cause of genome shrinkage and affects all functional categories, although not evenly. Gene losses affecting biosynthesis of nucleotides, cofactors, cell envelope and transport are particularly important. It is no longer able to synthesize tryptophan, it is unable to provide riboflavin to its host and lacks most of the transporters encoded by other B.aphidicola genomes. Buchnera aphidicola subsp. Cinara cedri could be undergoing a process of genome degradation and functional replacement by the coexisting secondary endosymbiont Serratia symbiotica. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Buchnera Buchnera aphidicola Bp Negative Mesophilic HostAssociated Symbiotic Acyrthosiphon kondoi Singles No 224915 NC_004545.1 Bac0014437 Enterococcus faecalis V583 "Enterococci are regular inhabitants of the bowel. The genome of E. faecalis is more than 25% exogenously acquired DNA. Enterococci are the leading cause of hospital-acquired secondary infections.The genome of Enterococcus faecalis was recently sequenced. The main chromosome is 3,218,031 bp long with 3,182 open-reading frames, and the three plasmids are 66,320 bp long, 57,660 bp long, and 17963 bp long, with 72, 64, and 19 open-reading frames respectively. The G+C content of the main chromosome is 37.5% and around 34% for the three plasmids. The genome will provide insight into the mechanisms of pathogenicity and the evolution of the genome and how it has acquired or developed vancomycin resistant strains. As regards virulence factors, researchers have discovered a pathogenicity island on the genome of E. faecalis. This region contains about 150 kbp long with a lower G+C content than the rest of the genome and encodes genes that aid the bacteria in host infection, including genes for a toxin that punctures cell walls and genes for molecules that help E. faecalis adhere to surfaces. It is also believed that many of the genes on the E. faecalis genome have been acquired through lateral gene transfer, both within the species and the genus, but also with other genera, specifically Streptococcus and Staphylococcus.More than 25% of the genome of E. faecalis is mobile or exogenously acquired DNA, including 7 probable integrated phage regions, 38 insertion elements, several conjugative and composite transposons, the above-mentioned pathogenicity island, and integrated plasmid genes. This obvious inclination to acquire mobile gene elements has certainly contributed to the rapid acquisition and dissemination of drug resistance of the Enterococci. There is also evidence that Enterococci act as a reservoir of drug resistance for other genera, especially as concerns vancomycin resistance.Vancomycin is currently the strongest antibiotic in our arsenal, used as a last resort to treat bacterial infections that respond to no other antibiotics. Unfortunately several species of bacteria, including Enterococcus faecalis have developed resistance to our last line of defense. Vancomycin resistance in E. faecalis is encoded on a mobile element of DNA in the genome. The gene encodes vancomycin resistance via synthesis of modified peptidoglycan precursors that terminate in D-lactate.Enterococci are Gram-posistive cocci that occur singly, in pairs, or in short chains. They are facultative anaerobes. They have a fermentative metabolism in which they convert carbohydrates to lactic acid. They are usually considered strict fermenters because they lack a Kreb's cycle respiratory chain. Analysis of the E. faecalis genome highlights the importance of the fermentation of nonabsorbed sugars in the gastrointestinal tract. E. faecalis has a large number of sugar uptake systems, comparable to Listeria species and considerably more than any other sequenced bacteria. E. faecalis also produces a large amount of extracellular oxygen, one of the few bacteria that does so. E. faecalis also has cation homeostasis mechanisms, which likely contributes to its resistance to pH, salt, metal, and desiccation. Enterococci are usually catalase negative, although sometimes tests can come back slightly positive. They used to be classified as Group D streptococci due to the fact that they have the Lancefield Group D antigen (glycerol teichoic acid antigen) in their cell walls.Enterococci have been described as extremely hardy organisms capable of living in many mediums that would certainly kill other bacteria. They normally inhabit the bowels of animlas, humans included, but they are found in soil, vegetation, and surface water, probably due to contamination by animal excrement. Enterococci are capable of growing at a range of temperatures from 10-45 degrees Celsius, and can grow in hypotonic, hypertonic, acidic, or alkaline environments. As facultative anaerobes, enterococci can grow under reduced or oxygenated conditions. They are also capable of survival at 60 degrees Celsius for 30 minutes. Enterocoocus faecalis is able to grow in 6.5% NaCl. Enterococci can also grow in 40% bile salts and over a broad range of pH. Enterococci also have a large amount of natural antibiotic resistance.Enterococci are the leading cause of nosocomial infection (or secondary infection aquired while in a hospital). They are responsible for approximately 110,000 cases of urinary tract infection, 25,000 cases of bacteremia, 40,000 wound infections, and 1,100 cases of endocarditis yearly in the United States. To infect hosts enterococci primarily colonize mucosal surfaces. They also must evade host defenses although little is known about the actual mechanism of evasion. The pathogenicity of the organism is believed to be closely associated with its ability to produce cytolysin, a toxin that causes rupture of a variety of target membranes, including bacterial cells, erythrocytes, and other mammalian cells. (From http://microbewiki.kenyon.edu/index.php/Enterococcus) (MicrobeWiki: Enterococcus)" Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis V583 Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Yes 226185 NC_004669.1 Bac0014438 Bifidobacterium longum NCC2705 "Bifidobacteria, called probiotics, are a natural part of the bacterial flora in the human body and have a symbiotic bacteria-host relationship with humans. B. longum promotes good digestion, boosts the immune system, and produces lactic and acetic acid that controls intestinal pH. These bacteria also inhibit the growth of Candida albicans, E. coli, and other bacteria that have more pathogenic qualities than Bifidobacteria.The circular chromosome of Bifidobacterium longum has a genome approximately 2,260,000 bp in length with a 60% G-C content. More research is being done on sequencing other species of Bifidobacterium, especially to understand its probiotic qualities.Bifidobacterium is a Gram-positive, anaerobic, branched rod-shaped bacterium. In the intestines, they ferment sugars to produce lactic acid. The B. longum genome codes for many proteins specialized for the catabolism of oligosaccharides. This bacterium also is able to use so-called ""nondigestible"" plant polymers or host-derived glycoproteins and glcoconjugates; it is thought that Bifidobacterium's ability to compete with other gastrointestinal bacteria and occupy a large percentage in the bacterial flora of the gastrointestinal region might be partly due to the large variety of molecules that it is able to use for energy (Schell et al. 2002). Bifidobacteria have a unique hexose metabolism that occurs through a phosphoketolase pathway. This pathway, called the bifid shunt, uses the key enzyme frutose-6-phosphate phosphoketolase (F6PPK) and is the generally used as a diagnostic test for this Bifidobacteria because it's not found in other gram-positive intestinal bacteria.While Bifidobacterium infantis, B. brevi, and B. longum are the largest bacteria group in the intestines of infants, Bifidobacteria are said to be only the 3rd or 4th largest group of bacteria in adults (and only 3-6% of adult fecal flora). The number of these bacteria actually decline in the human body with age. In infants who are breast-fed, Bifidobacteria constitute about 90% of their intestinal bacteria; however, this number is lower in bottle-fed infants. When breast-fed infants' diets are changed to cows milk and solid food, Bifidobacteria are joined by rising numbers of other bacteria found in the human body such as Bacteroides and Streptococci lactobacilli. The lower number of Bifidobacteria in formula-fed babies might account for a higher risk of diarrhea and allergies that is usually associated with babies who aren't breast-fed; in addition, because Bifidobacteria produces lactic acid instead of gas (like E. coli), infants and people in general with more Bifidobacteria than other bacteria will have less gas and digestive problems.Bifidobacteria as well as other benefical bacteria can be found in fermented dairy foods, especially yogurt. Eating substances rich with these probiotics is a sort of home remedy for diarrhea, vaginitis, and yeast infections because it promotes the growth of these as opposed to other bacteria. (From http://microbewiki.kenyon.edu/index.php/Bifidobacterium) (MicrobeWiki: Bifidobacterium)" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum NCC2705 Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Clusters - Pairs - Singles Nonsporulating No 206672 NC_004943.1 Bac0014439 Blochmannia floridanus Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Blochmanniella Candidatus Blochmanniella floridana 203907 NC_005061.1 Bac0014440 Wolinella succinogenes DSM 1740 "W. succinogenes is a nonfermenting bacterium that grows anaerobic respiration and has been reported to grow in the presence of 2% oxygen). The darting motility of W. succinogenes has triggered several projects that investigated the unique aspects of its monotrichous flagellation and the insertion of the flagellar motor into the pole of the cell. W. succinogenes has been isolated from the bovine rumen, the human gingival sulcus, and dental root canal infections.To understand the origin and emergence of pathogenic bacteria, comparison to their nonpathogenic relatives is a necessary. Therefore, the 2.11-megabase genome sequence of Wolinella succinogenes, which is closely related to the pathogenic bacteria Helicobacter pylori and Campylobacter jejuni, has been sequenced. Despite being considered nonpathogenic to its bovine host, W. succinogenes holds an extensive repertoire of genes homologous to known bacterial virulence factors. Many of these genes have been acquired by lateral gene transfer.In contrast to other host-adapted bacteria, W. succinogenes does contain the highest density of bacterial sensor kinases found in any bacterial genome to date, together with an elaborate signalling circuitry of the GGDEF family of proteins. Because the analysis of the W. succinogenes genome also revealed genes related to soil and plant associated bacteria such as the nif genes, W. succinogenes may represent a member of the epsilon proteobacteria with a life cycle outside its host.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes DSM 1740 Negative Spirilla Yes 1 2 Microaerophilic Mesophilic HostAssociated Free living Cow No 273121 NC_005090.1 Bac0014441 Nanoarchaeum equitans Kin4-M "Discovered as being tiny dots on another organism, Nanoarchaeum was published as being an organism in need of a new phylum among the Archaea. They have not been able to grown on their own and while a parasitic lifestyle cannot be excluded at present, there have been several observations that promote a symbiotic mode of life. Since the original publication, there have been Nanoarchaeota found all over the world that are related to Nanoarchaeum but need to be classified in different families.Nanoarchaeum has a tiny genome with only 490 kb, which represents the smallest archaeal genome to date. Comparing ss rRNA sequences, it was noted that sequence identities were more like archaeon than bacterial species. There was no difference, however, in the sequence identity to the Crenarchaeota, Euryarchaeota, and 'Korarchaeota', indicating it represents a new archaeal phylum.It is very common for parasitic and symbiotic bacteria to have small genomes. They can develop these by the elimination of unneeded genes and the acquisition of new genes by lateral gene transfer. It is possible that N. equitans had a size reduction during adaptation to Ignicoccus or it could be an ancient genome since it is assumed that the genomes of the first microorganisms were small.These coccus cells are only 400 nm in diameter and are covered by an S-layer. They require cell-cell contact with an actively growing Ignicoccus cell in order to grow. No negative effects have been observed on Ignicoccus cells with the addition of Nanoarchaeum, hinting at a possible non-parasitic lifestyle. This new Ignicoccus species that has been found as a Nanoarchaeum host, is an autotrophic sulfur-reducing thermophile.This new microorganism was first identified from hot rocks taken at Kolbeinsey ridge, north of Iceland. This hydrothermal system is located at the subpolar Mid-Atlantic Ridge at a depth estimated at 106m. N. equitans can grow in the same temperature range as its host, which is 70-98oC, a pH around 6.0, and salt concentrations of about 2% NaCl. They grow on Ignicoccus cells in what is either a symbiotic or parasitic relationship.Other nanoarchaeotal 16S rRNA genes have been obtained from the East Pacific Rise (pH 6.5), the Obsidian Pool in Yellowstone National Park (80oC, pH 6.0), and Caldera Uzon in Kamchatka, Russia (85oC, pH 5.5). (From http://microbewiki.kenyon.edu/index.php/Nanoarchaeum) (MicrobeWiki: Nanoarchaeum)" Nanobdellati Nanobdellota Candidatus Nanoarchaeia Nanoarchaeales Nanoarchaeaceae Nanoarchaeum Nanoarchaeum equitans Kin4-M Cocci No 1 1 Anaerobic Hyperthermophilic HostAssociated Symbiotic No 228908 NC_005213.1 Bac0014442 Onion yellows phytoplasma OY-M "Phytoplasmas have diverged from Gram-positive bacteria, and belong to the genus Phytoplasma within the class Mollicutes. They are plant pathogens, causing severe symptoms such as stunting, phyllody, witches broom, yellowing, and yield losses in over 300 economically important plant species worldwide. Transmission of phytoplasmas to plants occurs when insects feed from plant phloem. The bacteria are introduced into plant phloem with insect saliva. In plants, phytoplasmas remain restricted to the phloem tissue where they systemically spread throughout the plant. They are among the smallest self-replicating organisms known, and are characterized by a small genome with a low G+C content, and a lack of a firm cell wall.Onion yellows phytoplasma has 2 extrachromosomal elements, EcOYM and pOYM. (HAMAP: ONYPE)" Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Onion yellows phytoplasma OY-M Positive Cocci No 1 1 Aerobic Mesophilic HostAssociated No 262768 NC_005303.2 Bac0014443 Lactobacillus johnsonii NCC 533 "Lactobacilli produce lactic acid and are used for many different things, including yogurt production and the maintenance of healthy intestinal microflora. Lactobacilli are commonly associated with the gastrointestinal tract of humans. The genome of the Lactobacillus plantarum has been sequenced and the genomes of several other Lactobacilli are underway. The goal of researchers is to better understand the roles, capabilities, and interactions of Lactobacilli.The genome of Lactobacillus plantarum has been sequenced. The genome is 3,308,274 bp long with 3,052 open-reading frames, and a G+C content of 44.5%. L. plantarum occupies many different niches in the environment including the human gastrointestinal tract. L. plantarum is very ecologically flexible as is reflected in the fact that it has one of the largest genomes of any of the lactic acid bacteria.The genome of Lactobacillus bulgaricus, which is currently in progress, is about 2.3 Mbp long with a G+C content of 50%. L. bulgaricus is one of the two bacteria required for the production of fermented milk and yogurt. The complete sequence of this genome will provide better understanding and control of this bacterium in the fermentation process.Lactobacilli are rod-shaped, Gram-positive, fermentative, organotrophs. They are usually straight, although they can form spiral or coccobacillary forms under certain conditions. They are often found in pairs or chains of varying length. Lactobacilli are classified as lactic acid bacteria, and derive almost all of their energy from the conversion of glucose to lactate during homolactic fermentation. In this process 85-90% of the sugar utilized is converted to lactic acid. They generate ATP by nonoxidative substrate-level phosphorylation.Lactobacilli are commonly associated with plant herbage. They have a generation time ranging from 25 minutes to several hundred minutes, and grow optimally between the temperatures of 30 and 40 degrees Celsius, although thermophilic strains can be comfortable at temperatures as high as 45 degrees Celsius. They are also commonly associated with the gastrointestinal tract of animals and humans. As natural GI microflora they are believed to perform several beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of healthy intestinal microflora. Lactobacillus gasseri appears to be the main species of lactobacilli that inhabits the human gastrointestinal tract. (From http://microbewiki.kenyon.edu/index.php/Lactobacillus) (MicrobeWiki: Lactobacillus)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii NCC 533 Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Homo sapiens Chains No 257314 NC_005362.1 Bac0014444 Bdellovibrio bacteriovorus HD100 "Bdellovibrio bacteriovorus is a tiny and highly motile delta-proteobacterium that preys on other Gram-negative bacteria. Bdellovibrio bacteriovorus attaches itself to the cell wall of its prey and invades the cell where it goes through a full-life cycle. After it reproduces, the offspring burst out of the cell. Despite its small size, it has a relatively large genome encoding more than 3500 proteins. (HAMAP: BDEBA)" Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus HD100 Negative CurvedShaped No 1 2 Aerobic 28 Mesophilic Multiple No 264462 NC_005363.1 Bac0014445 Methanococcus maripaludis S2 "Methanococcus maripaludis (Latin ""mare"" meaning sea, ""palus"" meaning marsh) is a model species among the methanogenic Archaea. Originally characterized by W. J. Jones, the species was the predominent methanogen isolated from a salt-marsh sediment in South Carolina, United States. Numerous additional isolates were obtained by W. Whitman, including strain S2, also known as strain LL. M. maripaludis is strictly anaerobic, hydrogenotrophic (growing on hydrogen and carbon dioxide) and nitrogen-fixing, and is a mesophilic relative of the hyperthermophilic Methanococcus jannaschii. Cells are irregular cocci with weak motility. M. maripaludis is an excellent laboratory model because of rapid, reliable growth, a complete genome sequence, a robust set of genetic tools, and ongoing studies with expression arrays and proteomics.Methanococcus maripaludis possesses a small, circular genome of 1.66 Mb in length with no extrachromosomal elements. The genome has a low, 33%, GC content. Open reading frame predictions indicate 1719 orfs. The maripaludis genome is relatively simple with few repeated sequences, though it contains three copies of the 16S and 23S ribosomal genes. Interestingly, while the genome of the closely related Methanocaldococcus jannaschii contains a number of inteins, maripaludis appears to lack inteins entirely, even in orfs that are otherwise highly homologous to their M. jannashii counterparts. (From http://faculty.washington.edu/leighj/mm.html) (BacMap)" Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis S2 Cocci No 1 1 Anaerobe 35 Lithotroph Mesophilic Aquatic Free living Singles Nonsporulating No 267377 NC_005791.1 Bac0014446 Yersinia pestis biovar Microtus str. 91001 "Gram-negative straight rods, sometimes approaching a spherical shape. Y.pestis is always nonmotile. It is the causative agent of plague which is primarily a disease of wild rodents. Y.pestis is transmitted among wild rodents by fleas, in which the bacteria multiply and block the esophagus and the pharynx. The fleas regurgitate the bacteria when they take their next blood meal. Bacteria are transmitted subcutaneously to humans by the bite of infected fleas, but also by air, especially during pandemics of disease. Infective flea bites produce the typical bubonic form of plague in humans. Y.pestis is very closely related to the gastrointestinal pathogen Yersinia pseudotuberculosis, and it has been proposed that Y.pestis evolved from Y.pseudotuberculosis 1,500-20,000 years ago. Strain 91001 is avirulent in humans. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pestis 91001 Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 229193 NC_005810.1 Bac0014447 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 "Leptospira interrogans causes leptospirosis whose manifestations are fever, headache, malaise, myalgia, occasionally meningitidis, sometimes jaundice, renal insufficiency, anemia and hemorrhage of the skin. Rarely lethal. Worldwide spread except in polar regions. Contamination occurs through contact of the skin or mucous membranes with contaminated water, soil or vegetation or through direct contact with urine or tissues of infected animals. Farm and pet animals, including cattle, dogs, horses and swine, rats and other rodents act as the normal carrier host; wild animals, including deer, squirrels, foxes, skunks and even reptiles and amphibians may be infected. (HAMAP: LEPIC)" Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Fiocruz L1-130 Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated Yes 267671 NC_005823.1 Bac0014448 Thermus thermophilus HB27 "Thermus thermophilus is an extremely thermophilic, halotolerant bacterium. It was isolated from a natural thermal environment in Japan. It has an optimal growth temperature of about 85 Celsius degrees. Thermus thermophilus has become a model organism in structural biology and some of its enzymes have a biotechnological application. (HAMAP: THET2)" Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus HB27 Negative NA NA 1 2 Aerobe 0 Thermophilic Specialized No 262724 NC_005835.1 Bac0014449 Candidatus Protochlamydia amoebophila UWE25 Candidatus Protochlamydia amoebophila UWE25. An endosymbiont of free-living amoebae (Acanthamoeba sp. endosymbiont UWE25) and implicated as a potential human pathogen this strain is an environmental isolate. Its genome size is approximately twice as large as other pathogenic species belonging to the Chlamydiaceae family. (NCBI BioProject: bp_list[1]) Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila UWE25 Negative Mesophilic HostAssociated Symbiotic Homo sapiens Yes 264201 NC_005861.2 Bac0014450 Nitratidesulfovibrio vulgaris str. Hildenborough "Nitratidesulfovibrio vulgaris strain Hildenborough is a Gram-negative, rod-shaped bacterium characterized by its single-cell arrangement and anaerobic metabolic requirements. This organism thrives optimally at a temperature of 25.0°C, indicating its preference for moderate environmental conditions. N. vulgaris is versatile in its habitat, suggesting its adaptability to a variety of anaerobic environments.↵↵As a member of the microbial community, N. vulgaris likely plays a significant role in biogeochemical cycles, particularly in the reduction of nitrate and sulfate compounds. Its anaerobic nature implies that it may contribute to processes such as denitrification and sulfate reduction, which are critical for maintaining the balance of nitrogen and sulfur in various ecosystems. This functional capability positions N. vulgaris as a potential player in the remediation of anaerobic environments, where it may facilitate nutrient cycling and contribute to the overall health of microbial communities in sediments, wetlands, or other low-oxygen habitats." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris Negative Rod Yes 1 2 Anaerobe 25 Mesophilic Multiple Free living Singles 882 NC_005863.1 Bac0014451 Bartonella henselae str. Houston-1 "Bartonella henselae infects both cats and humans. The bacteria are transmitted among cats by the cat flea Ctenocephalides felis and to humans by cat scratches or cat bites. Infections produce no clinical symptoms in cats whereas cat-scratch disease in humans causes manifestations in the liver, the skin, the lymphatic organs, and the nervous and cardiovascular systems. (HAMAP: BARHE)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella henselae Houston-1 Negative Bacilli No 1 2 Aerobic 37 Mesophilic HostAssociated Yes 283166 NC_005956.1 Bac0014452 Cutibacterium acnes KPA171202 "Cutibacterium acnes KPA171202 is a Gram-positive, rod-shaped bacterium that is classified as a nonsporulating anaerobe. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, typically found on human skin. ↵↵As an anaerobic organism, C. acnes KPA171202 does not require oxygen for its metabolic processes, which is consistent with its ecological niche in the sebaceous glands of the skin where oxygen levels are low. The presence of this bacterium is often associated with the skin microbiome, playing roles in maintaining skin homeostasis and potentially influencing the health of the host through its metabolic activities.↵↵The adaptability of C. acnes KPA171202 to the anaerobic environment of the skin suggests that it may have evolved specific mechanisms to thrive in this niche, possibly contributing to its role in the complex interactions within the skin microbiota. Understanding the traits and ecological role of this strain provides insights into its contributions to skin health and disease, highlighting the intricate balance of microbial communities on human skin." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 267747 NC_006085.1 Bac0014453 Streptococcus pyogenes MGAS10394 "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes MGAS10394 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 286636 NC_006086.1 Bac0014454 Leifsonia xyli subsp. xyli str. CTCB07 Leifsonia xyli subsp. xyli is a Gram-positive bacterium that causes ratoon stunting disease and affects sugarcane worldwide.(From http://www.expasy.org/sprot/hamap/LEIXX.html) (BacMap) Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia xyli CTCB07 Negative Bacilli No 1 Aerobic 20 Mesophilic HostAssociated Free living No 281090 NC_006087.1 Bac0014455 Rickettsia typhi str. Wilmington "Rickettsia typhi is the causative agent of murine typhus or endemic typhus. Infection with Rickettsia typhi causes headache, fever, myalgia and leads to multisystem disease, including infection of the brain, lung, liver, kidney and heart. In severe cases R.typhi can cause meningoencephalitis, interstitial pneumonia and disseminated vascular lesions. It can be transmitted to the mammalian host by the bite of an infected flea or louse but the most important mechanism of inoculation is through the feces of the vector. Although distributed worldwide, it is mostly present in warm coastal areas harbouring large rat populations.(From http://www.expasy.org/sprot/hamap/RICTY.html) (BacMap)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia typhi Wilmington Negative Bacilli No 1 2 Aerobic Mesophilic HostAssociated Symbiotic Homo sapiens Nonsporulating Yes 257363 NC_006142.1 Bac0014456 Bacillus licheniformis DSM 13 = ATCC 14580 "Bacillus licheniformis DSM 13 (also known as ATCC 14580) is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative aerobic metabolism. This species is known to thrive in host-associated environments, suggesting a potential symbiotic or commensal relationship with various hosts. Its capacity to sporulate enables it to survive adverse conditions, making it resilient in diverse habitats. ↵↵As a facultative aerobe, B. licheniformis is capable of utilizing both aerobic and anaerobic respiration, allowing it to adapt to varying oxygen levels in its environment. This metabolic versatility may contribute to its persistence in host-associated niches, where oxygen availability can fluctuate.↵↵The ecological role of B. licheniformis may extend beyond its survival strategies; it has been observed to participate in nutrient cycling and biological processes within its host systems. Notably, its sporulation and metabolic capabilities suggest it could play a significant role in the microbiome dynamics of its host, potentially influencing host health and microbial community structure. Further research into these interactions could provide insights into the ecological significance of B. licheniformis and its potential applications in biotechnology and agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus licheniformis Positive Rod Yes 1 1 Facultative aerobe Mesophilic HostAssociated Free living Sporulating 279010 NC_006270.3 Bac0014457 Mesomycoplasma hyopneumoniae 232 "Mesomycoplasma hyopneumoniae 232 is a Gram-negative bacterium recognized for its association with respiratory tract infections in swine. As a member of the class Mollicutes, this species is characterized by its lack of a cell wall, which contributes to its unique morphology and resistance to certain antibiotics that target cell wall synthesis. The absence of a rigid cell wall allows Mesomycoplasma hyopneumoniae 232 to exhibit a pleomorphic shape, often presenting as filamentous or spiral forms.↵↵This microbe's Gram-negative classification indicates the presence of an outer membrane containing lipopolysaccharides, which may play a role in its interaction with host tissues and immune responses. The notable features of Mesomycoplasma hyopneumoniae 232 suggest it operates in a complex ecological niche within the porcine respiratory microbiome, potentially influencing the dynamics of microbial communities and the health of the host.↵↵Furthermore, the study of Mesomycoplasma hyopneumoniae 232 can provide insights into the evolutionary adaptations of bacteria in response to host environments, illustrating how certain microbial traits may facilitate survival and persistence in a competitive microbial landscape. Understanding these interactions may contribute to improved management strategies in swine health and disease prevention." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyopneumoniae negative 295358 NC_006360.1 Bac0014458 Lactiplantibacillus plantarum WCFS1 "Lactiplantibacillus plantarum WCFS1 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is around 25.0°C, indicating a preference for moderate conditions. L. plantarum WCFS1 is found in various habitats, which suggests its versatility and adaptability in diverse ecological niches.↵↵The ability of L. plantarum WCFS1 to grow in multiple environments may correlate with its potential applications in food fermentation processes, where it can contribute to the production of various fermented food products. The strain is known for its role in maintaining the balance of gut microbiota, which highlights its significance in both human health and food science. Understanding the growth conditions and ecological roles of L. plantarum WCFS1 can provide insights into its functional capabilities and potential benefits in probiotic applications. The adaptability of this microbe in different habitats underscores its importance in microbial community dynamics and its potential influence on fermentation and preservation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 220668 NC_006377.1 Bac0014459 Streptococcus thermophilus LMG 18311 "Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. Like other lacid acid bacteria they are acid tolerant, cannot synthesize prophyrins and are strictly fermentative with lactic acid as their major metabolic end product. Streptococcus thermophilus is a Gram-positive facultative anaerobe. It is used, along with Lactobacillus spp., as a starter culture for the manufacture of several important fermented dairy foods, including yogurt and mozzarella. Consequently, over 10(21) live cells are ingested annually by the human population. S. thermophilus has an important role as a probiotic, alleviating symptoms of lactose intolerance and other gastrointestinal disorders. S.thermophilus strain LMG 18311 was isolated from yogurt manufactured in the United Kingdom. (HAMAP: STRT2)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus LMG 18311 Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs Nonsporulating No 264199 NC_006448.1 Bac0014460 Idiomarina loihiensis L2TR "Idiomarina loihiensis is a gamma-proteobacterium isolated recently from a hydrothermal vent at 1300-m depth on the Loihi submarine volcano in Hawai. In contrast to obligate anaerobic vent hyperthermophiles, it inhabits partially oxygenated cold waters at the periphery of the vent and can survive a wide range of growth temperatures (from 4 degrees to 46 degrees Celsius) and salinities. I.loihiensis probably relies primarily on amino acid fermentation rather than on saccharolytic pathways for carbon and energy.(From http://www.expasy.org/sprot/hamap/IDILO.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis L2TR Negative Bacilli Yes 1 2 Aerobic 4 Mesophilic Specialized Free living No 283942 NC_006512.1 Bac0014461 Synechococcus elongatus PCC 6301 "The freshwater cyanobacterium Synechococcus PCC 7942 (previously known as Anacystis nidulans R2) was the first cyanobacterium demonstrated to be reliably transformable by exogenously added DNA. Over the decades many genetic tools have been developed for Synechococcus and applied to other transformable cyanobacteria. Strain PCC 7942 is an obligate photoautotroph with a genome of approximately 2.7 Mb. It has been extensively studied by a multi-national research community with respect to: acquisition of inorganic carbon, transport and regulation of nitrogen compounds, response to iron deprivation, acclimation to a variety of nutrient stresses, adaptation to environmental variations in temperature and light intensity and photosynthesis. In recent years, Synechococcus PCC 7942 has taken a pioneering position as the only developed model system for exploring the mechanism of the prokaryotic circadian clock. Gene organization and sequence are nearly identical to another freshwater cyanobacterium Synechococcus elongatus PCC 6301 (SYNP6) except for a large inversion of 187 kb. The endpoints of this inversion are found in genes that may encode outer membrane porins, and thus the two proteins in question are polymorphic with respect to one another. These differences may explain the fact that SYNE7 is naturally competent for transformation while SYNP6 is not. (EBI Integr8)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus elongatus Negative Rod Yes 1 2 Facultative Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Chains - Singles No 269084 NC_006576.1 Bac0014462 Shouchella clausii KSM-K16 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Shouchella Shouchella clausii 66692 NC_006582.1 Bac0014463 Lactobacillus acidophilus NCFM "Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. Historically, probiotic roles have been ascribed primarily to Lactobacillus acidophilus. The genus Lactobacillus presently comprises more than 50 recognized species of non pathogenic bacteria which in addition to their probiotic effects are useful to human as indispensable agents for the fermentation of foods and feed.Lactobacillus acidophilus NCFM / NCK56 / N2 is a probiotic strain found in conventional foods like milk, yogurt and dietary supplements. It is commercially available in the United States since the mid-1970s. It has the ability to survive passage through the gastrointestinal tract. (HAMAP: LACAC)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus NCFM Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Homo sapiens Chains No 272621 NC_006814.3 Bac0014464 Xanthomonas oryzae pv. oryzae KACC 10331 "Xanthomonas oryzae pv. oryzae KACC 10331 is a Gram-negative, rod-shaped bacterium that is typically found in host-associated environments. As an aerobic organism, it requires oxygen for its metabolic processes, which aligns with its habitat preferences and lifestyle. This strain is part of the Xanthomonadaceae family, which includes various species known for their interactions with plant hosts. ↵↵Xanthomonas oryzae pv. oryzae is particularly notable for its role in agricultural ecosystems, where it may be involved in the breakdown of organic matter and nutrient cycling in host-associated habitats. The bacterium's aerobic nature suggests a potential specialization in environments with adequate oxygen supply, such as those found in the rhizosphere or the phyllosphere of plants. Understanding the ecological role of this strain can provide insights into its interactions within plant communities, particularly in relation to its potential impact on plant health and productivity. The presence of Xanthomonas oryzae pv. oryzae KACC 10331 in such habitats underscores the importance of microbial diversity in maintaining ecosystem balance and functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living 291331 NC_006834.1 Bac0014465 Aliivibrio fischeri ES114 "Aliivibrio fischeri ES114 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microorganism is a facultative anaerobe, capable of thriving in both aerobic and anaerobic conditions, which allows it to adapt to a variety of environments. It exhibits heterotrophic metabolism, utilizing organic compounds as its energy source, which is characteristic of many bacteria that inhabit diverse ecological niches. ↵↵Aliivibrio fischeri ES114 has an optimal growth temperature of approximately 20.0 °C, indicating a preference for cooler environments, possibly reflecting its natural habitats in marine or estuarine settings. This adaptability to varying oxygen levels and temperatures suggests that A. fischeri ES114 may play a role in nutrient cycling within its ecosystem.↵↵The ecological significance of Aliivibrio fischeri ES114 may extend to its interactions with other organisms, particularly in marine environments, where it could contribute to the microbial community structure and function. Its heterotrophic nature implies a potential role in the degradation of organic matter, thereby influencing the overall health and balance of aquatic ecosystems. Further studies could elucidate its specific interactions and contributions to biogeochemical processes in its native habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio fischeri Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Symbiotic Singles 312309 NC_006840.2 Bac0014466 Salmonella enterica subsp. enterica serovar Choleraesuis str. "Salmonella enterica subsp. enterica serovar Choleraesuis strain SC-B67. This organism is an extremely invasive serovar that is increasingly becoming resistant to multiple antibiotics such as fluoroquinolones, which severly inhibits the treatment of systemic infections caused by this organism. This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. Mutations in the gyrase and topoisomerase genes appear to be the cause of the ciprofloxacin resistance while the presence of an ampC gene on a transmissable plasmid was responsible for ceftriaxone resistance. This organism also causes severe disease (swine paratyphoid) in pigs. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica SC-B67 Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Chains - Singles Nonsporulating Yes 28901 NC_006855.1 Bac0014467 Bacillus cereus E33L "Bacilli are an extremely diverse group of bacteria that include both the causative agent of anthrax (Bacillus anthracis) as well as several species that synthesize important antibiotics. In addition to medical uses bacillus ,spores, due to their extreme tolerance to both heat and disinfectants, are used to test heat sterilization techniques and chemical disinfectants. Bacilli are also used in the detergent manufacturing industry for their ability to synthesize important enzymes.The sequence for the genome of Bacillus subtilis was completed in 1997 and was the first published sequence for a single-living bacterium. The genome is 4.2 Mega-base pairs long with with 4100 protein-coding regions. Bacillus subtilis has a plant growth promoting rhizobacterium shown to synthesize antifungal peptides. This ability has lead to the use of B. subtilis in biocontrol. B. subtilis has been shown to increase crop yields, although it has not been shown whether this is because it enhances plant growth, or inhibits disease growth.The genome of Bacillus anthracis is 5,227,293 base pairs long with 5,508 predicted protein-coding regions. The genome of B. anthracis is highly homologous with the genomes of both B. cereus and B. thuringiensis which have also been sequenced. The genome of B. anthracis has only 141 proteins that do not have a match in the protein set of B. cereus. Almost all of the virulence factors associated with anthrax are coded on its two plasmids and, surprisingly, almost all of these genes have homologues in B. cereus. This suggests that these virulence-enhancing genes are not specifically unique to Bacillus anthracis, but rather are part of the common array of genes of the B. cereus group (of which B. anthracis, B. cereus, and B. thuringiensis are all a part). B. anthracis also seems to have a decreased capacity for the extensive carbohydrate metabolism seen in B. subtilis, but possesses the genes for the cleavage of extracellular chitin and chitosan, which confirms its close relationship with the insect pathogen B. thuringiensis.Bacilli are rod-shaped, Gram-positive, sporulating, aerobes or facultative anaerobes. Most bacilli are saprophytes. Each bacterium creates only one spore, which is resistant to heat, cold, radiation, desiccation, and disinfectants. Bacilli exhibit an array of physiologic abilities that allow them to live in a wide range of habitats including many extreme habitats such as:desert sands, hot springs, and Arctic soils. Species in the genus Bacillus can be thermophilic, psychrophilic, acidophilic, alkaliphilic, halotolerant, or halophilic and are capable at growing at pH values, temperatures, and salt concentrations where few other organisms can survive.Due to the metabolic diversity in the genus Bacillus, bacilli are able to colonize a variety of habitats ranging from soil to insects, to humans. Bacillus thuringiensis parasitizes insects, and is commercially used form pest control. Although the most well known of the bacilli are the pathogenic species, most bacillus are saprophytes that make their living off of decaying matter. Still others, namely Bacillus subtilis, inhabit the rhizosphere, which is the interface between plant roots and the surrounding soil. The plants roots and associated biofilm can have a significant effect of on the chemistry of the soil, creating a unique environment.It has recently been shown that Bacillus subtilis engages in cannibalism. They use cannibalism as the easy way out in extreme cases. For survival in harsh environments, bacilli can form spores, but it is very costly to them energy-wise. An easier way, is for the bacteria to produce antibiotics that destroy neighboring bacilli, so that their contents may be digested allowing for the survival of a few of the bacteria. Essentially, what they are doing is snacking on their fellow bacilli, to tide them over, hoping for the environment to pick back up.Bacilli cause an array of infections from ear infections to meningitis, and urinary tract infections to septicemia. Mostly they occur as secondary infections in immunodeficient hosts or otherwise compromised hosts. They may exacerbate previous infection by producing tissue-damaging toxins or metabolites that interfere with treatment.The most well known disease caused by bacilli is anthrax, caused by Bacillus anthracis. Anthrax has a long history with humans. It has been suggested that the fifth and sixth plagues of Egypt recorded in the Bible (the fifth attacking animals, the sixth, known as the plague of the boils, attacking humans). In the 1600s anthrax was known as the ""Black bane"" and killed over 60,000 cows. Anthrax has more recently been brought to our attention as a possible method for bioterrorism. The recent anthrax mailings have brought acute public attention to the issue and sparked extensive research into the devastating disease.Anthrax is primarily a disease of herbivores who acquire the bacterium by eating plants with dust that contains anthrax spores. Humans contract the disease in three different ways. Cutaneous anthrax occurs when a human comes into contact with the spores form dust particles or a contaminated animal or carcass through a cut or abrasion. Cutaneous anthrax accounts for 95% of anthrax cases worldwide. During a 2-3 day incubation period the spores germinate, vegetative cells multiply, and a papule develops. Over the following days the papule ulcerates, dries and blackens to form the characteristic eschar. The process is painless unless infected with another pathogen.Gastrointestinal anthrax is contracted by ingesting contaminated meat. It occurs in the intestinal mucosa when the organisms invade the mucosa through a preexisting lesions. It progresses the same way as cutaneous anthrax. Although it is extremely rare in developed countries it has a very high mortality rate.Pulmonary anthrax is the result of inhaled spores that are transported to the lymph nodes where they germinate and multiply. They are then taken into the blood stream and lymphatics culminating in systemic arthritis which is usually fatal. (From http://microbewiki.kenyon.edu/index.php/Bacillus) (MicrobeWiki: Bacillus)" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus ZK Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Homo sapiens Chains Sporulating Yes 288681 NC_007105.1 Bac0014468 Rickettsia felis URRWXCal2 "Rickettsia felis strain URRWXCa12. The genome of Rickettsia felis strain URRWXCa12 (strain California 2) reveals some unusual features. There are two plasmids (pRF and pRFdelta), the first such identified in the Rickettsia genus, and the pRF plasmid has genes that encode proteins similar to those found on conjugative plasmids such as TraA from Agrobacterium tumefaciens, F plasmid TraD and TraG, and the chromosome encodes proteins similar to the vir genes of A. tumefaciens. The chromosome encodes a protein that is similar to the IncP plasmid primase protein TraC. All of these functions may be involved in pathogenesis and the movement of proteins and DNA and electron microscopy confirmed the evidence of a conjugative pilus in this organism as well as other fimbriae.The genome exhibited a large number of repetitive elements, including 82 transposase genes, and genomic comparisons with other Rickettsia indicates a large number of inversions and translocations. These were many Rickettsia palindromic elements (RPEs) found in the genome as well as a large number of surface antigen (sca) genes including split genes that were shown to be transcribed, and genes encoding tricoriticopeptide repeat proteins (TPR) and ankyrin-repeat proteins, both of which may be involved in infection processes. Many global metabolic regulators were also discovered, including fourteen spoT paralogs that regulate cellular metabolism in Escherichia coli in response to starvation conditions and all fourteen were found to be transcribed. Sixteen toxin and fourteen anti-toxin genes were discovered that potentially may be involved in maintaining the presence of the bacteria in the host; possibly by targeting the host cell or in synchronizing the bacterial replication cycles. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia felis URRWXCa12 Negative Bacilli No 1 2 Aerobic Mesophilic HostAssociated Symbiotic Nonsporulating Yes 42862 NC_007109.1 Bac0014469 Candidatus Pelagibacter ubique HTCC1062 "Pelagibacter ubique strain HTCC1062. This organism is used in comparative genomics. The chromosome encodes biosynthetic pathways for all twenty amino acids and many enzymatic cofactors. There appears to be no recently horizontally transferred DNA in this organism and it does not even contain transposable elements although it does encode DNA uptake genes. The bacterium can generate energy through a light-driven proteorhodopsin proton pump or via respiration. Many metabolic pathways, including the Entner-Duodoroff, TCA, and glyoxylate bypass are present. This organism also encodes genes for type II secretion and type IV pilus synthesis. (NCBI BioProject: bp_list[1])" Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Candidatus Pelagibacter Candidatus Pelagibacter communis HTCC1062 Negative Bacilli No Aerobic Oligotroph Mesophilic Aquatic Free living Singles 335992 NC_007205.1 Bac0014470 Candidatus Blochmanniella pennsylvanica str. BPEN Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Blochmanniella Candidatus Blochmanniella pennsylvanica 291272 NC_007292.1 Bac0014471 Bacillus anthracis str. 'Ames Ancestor' "Bacillus anthracis is an endospore-forming bacterium that causes inhalational anthrax. During the course of the disease, endospores are taken up by alveolar macrophages where they germinate in phagolysosomal compartment. Vegetative cells then escape from the macrophage, eventually infecting blood.This strain (96-10355; K1256) is a human isolate from U.S. Army Medical Research Institute of Infectious Diseases. (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Ames 0581 Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Homo sapiens Sporulating Yes 261594 NC_007323.3 Bac0014472 Mesomycoplasma hyopneumoniae 7448 "Mesomycoplasma hyopneumoniae 7448 is a Gram-negative bacterium characterized by its small size and lack of a cell wall, a trait common among mycoplasmas. This microorganism is notable for its unique structural features that distinguish it from other bacterial groups. The absence of a rigid cell wall contributes to its pleomorphic nature, allowing it to adopt various shapes, which can complicate its identification and characterization in laboratory settings. ↵↵This species is typically found in the respiratory tract of swine, where it may play a role in respiratory health. Given its Gram-negative classification, it possesses an outer membrane that includes lipopolysaccharides; this feature is significant in its interactions with host tissues and immune responses. The metabolic capabilities of M. hyopneumoniae 7448 remain to be thoroughly elucidated, but mycoplasmas are generally known for their reduced metabolic pathways and reliance on host-derived nutrients.↵↵In the context of swine health, the presence of M. hyopneumoniae 7448 raises important considerations regarding respiratory diseases in pigs, particularly in terms of how such microbes can influence the overall microbial community and health status of their hosts. Understanding the ecological role of this bacterium within the porcine microbiome could provide insights into disease management and prevention strategies in swine production systems." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyopneumoniae negative 262722 NC_007332.1 Bac0014473 Thermobifida fusca YX "Thermobifida fusca, formerly known as Thermomonaspora fusca, is a moderate thermophilic soil bacterium (growth temperature 55 degrees Celsius) that is a major degrader of plant cell walls in heated organic materials such as compost heaps, rotting hay, manure piles or mushroom growth medium. It produces spores, which can be allergenic and causes the Farmer's lung disease (extrinsic allergic alveolitis). Its extracellular enzymes, including cellulases, have been studied because of their thermostability, broad pH range and high activity. It appears to degrade all major plant cell wall polymers except lignin and pectin and is able to grow on most simple sugars and carboxylic acids. Six different cellulases have been identified. Secreted cellulases have great biotechnological promise for utilization in the degradation of agricultural products and waste to produce sugars that can be subsequently converted to ethanol. Thermobifida fusca has a complete set of proteins comprising a sec system as well as the TAT system. Eight ABC disaccharide transporter cassettes were identified. A siderophore transport system, a siderophore biosynthesis cluster as well as a ferrous iron transport protein were identified. There are also four additional heavy metal transport systems. Thermobifida fusca is able to synthesize and metabolize saturated and unsaturated fatty acids, as well as phospholipids, glycolipids and isoprenoids. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Thermobifida Thermobifida fusca YX Positive Bacilli Yes 1 1 Aerobic 50 Thermophilic Multiple Free living Homo sapiens Sporulating No 269800 NC_007333.1 Bac0014474 Prochlorococcus marinus str. NATL2A "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus NATL2A Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 59920 NC_007335.2 Bac0014475 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = "Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 is a Gram-positive bacterium characterized by its coccoid shape and tendency to form clusters or exist as single cells. This species is classified as an aerobe, indicating its requirement for oxygen for growth and metabolic processes. It is primarily associated with host environments, suggesting a close relationship with living organisms, which may influence its ecological interactions and potential roles in host-associated microbiomes.↵↵The clustering arrangement of S. saprophyticus may facilitate its survival and colonization within host environments, potentially enhancing its ability to persist in various niches. This trait, combined with its aerobic metabolism, may provide advantages in oxygen-rich habitats, such as the urogenital tract, where it is commonly found. ↵↵Understanding the specific characteristics of S. saprophyticus subsp. saprophyticus ATCC 15305 can illuminate its ecological roles and interactions within host-associated microbiomes, contributing to the broader understanding of microbial communities in human health and disease." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living Clusters - Singles 29385 NC_007350.1 Bac0014476 Ehrlichia canis str. Jake "Ehrlichia canis is a Gram-negative, obligate intracellular bacterium. It is the causative agent of canine monocytic ehrlichiosis in dogs. It is transmitted by Rhipicephalus sanguineus, the brown dog tick. Rhipicephalus sanguineus is transmitted transstadially: the tick acquires the bacteria by feeding on an infected dog in either the larvae or nymph form and the tick transmits the disease to another dog as either the nymph or adult form. Ehrlichia seem to have a life-cycle composed of three steps. The initial bodies (small spherical structures) are believed to develop into larger multiple membrane-bound units known as morulae. The morulae are inclusions within the cytoplasm of the leukocyte. This morula is thought to then dissociate into small granules called elementary bodies. Symptoms of the acute infection are, among others, lethargy, anorexia, weight loss and even death if the disease is not treated. The genome of Ehrlichia canis (strain Jake) is made up of a single circular chromosome. It contains 17 pseudogenes. A substantial proportion of the genome (27%) is noncoding. It is an aerobic organism that is unable to use glucose or fructose as carbon or energy source, since no transport systems and essential enzymes for the utilization of these substrates were identified. However, amino acids seem to constitute the main energy and carbon source since amino acid transporters and enzymes for the utilization of aspartate, proline, glutamate, glutamine and arginine are present. It possesses biosynthetic pathways for proline, glutamate, glutamine, aspartate, lysine and arginine as well as pathways for purine and pyrimidines, pathways for lipid and phospholipid biosynthesis and for cofactor biosynthesis. Peptidoglycan and lipopolysaccharide seem to be absent from the outer membrane since enzymes for the biosynthesis of lipid A and the murein sacculus as well as for the metabolism of peptidoglycans and amino sugars are not present. Two clusters of Vir homologous proteins were identified. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia canis Jake Negative Bacilli No 1 2 Aerobic Mesophilic HostAssociated Free living Dog No? 269484 NC_007354.1 Bac0014477 Nitrobacter winogradskyi Nb-255 "Nitrobacter winogradskyi lives in soils, fresh water or marine environments. It uses inorganic compounds as energy sources. It oxidizes ammonia to nitrite and nitrite to an end product of nitrate. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Nitrobacter Nitrobacter winogradskyi Nb-255 Negative Bacilli Yes 1 2 Facultative Lithotroph Mesophilic Terrestrial Free living No 323098 NC_007406.1 Bac0014478 Cereibacter sphaeroides 2.4.1 "Cereibacter sphaeroides 2.4.1 is a Gram-negative, rod-shaped bacterium that typically forms chains and exhibits a versatile metabolic capacity, functioning as both an aerobe and an anaerobe. This organism thrives optimally at a temperature of 25.0 °C, suggesting a preference for mesophilic environments. As a photosynthetic microbe, C. sphaeroides 2.4.1 harnesses light energy to support its metabolic processes, which may enable it to occupy a variety of habitats where light availability varies.↵↵The ability of this bacterium to exist in multiple habitats indicates its ecological versatility and potential adaptability to diverse environmental conditions. This trait could facilitate its role in biogeochemical cycles, particularly in environments where light penetrates, allowing for photosynthetic activity alongside other microbial processes. Moreover, the dual energy sourcing capability (both aerobic and anaerobic) suggests that C. sphaeroides 2.4.1 may occupy niches that experience fluctuating oxygen levels, making it a key player in microbial communities where competition for resources varies. Understanding the ecological roles and interactions of this microbe could provide insights into the dynamics of microbial populations in its natural habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 272943 NC_007489.1 Bac0014479 Pseudomonas fluorescens Pf0-1 "Pseudomonas fluorescens is a is a physiologically diverse species of opportunistic bacteria that colonizes soil, water and plant surface environments. Some isolates, such as SBW25 and Pf-5, are beneficial to plant health and nutrition. It produces a soluble, greenish fluorescent pigment, particularly under conditions of low iron availability. It is a obligate aerobe, except for some strains that can utilize NO3 as an electron acceptor in place of O2. It is motile by means of multiple polar flagella. It has simple nutritional requirements and grows well in mineral salts media supplemented with any of a large number of carbon sources. Pseudomonas fluorescens strains are being studied for use in applications that require release and survival of bacteria in the soil such as bioremediation of various organic compounds, and biocontrol of pathogens in agriculture. A number of strains suppress plant diseases by protecting the seeds and roots from fungal infection. Competitive exclusion of pathogens as the result of rapid colonization of the rhizosphere by Pseudomonas fluorescens may also be an important factor in disease control.Pseudomonas fluorescens (strain Pf0-1) was isolated from in 1987 from loam soil in Sherborn, Massachusetts, USA. Comparisons of the 3 available strains (as of June 2009, SBW25, Pf-5 and Pf0-1) indicate they share only 61% of their genes, most of which cluster near the origin of replication. In fact, the three P. fluorescens strains could be different species. 125 SBW25 genes have been shown to be upregulated in the presence of plants; 83 have orthologs in Pf0-1 and 73 have orthologs in Pf-5. (HAMAP: PSEPF)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Nonsporulating No 205922 NC_007492.2 Bac0014480 Syntrophotalea carbinolica DSM 2380 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea carbinolica 338963 NC_007498.2 Bac0014481 Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 "Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 is a Gram-negative, rod-shaped bacterium that primarily thrives in host-associated environments. This strain exhibits an optimal growth temperature of 25.0°C, indicating a preference for moderate temperatures typically encountered in temperate climates. As an aerobic organism, it requires oxygen for its metabolic processes, which aligns with its habitat preference in environments where oxygen is readily available, such as on plant surfaces or within plant tissues.↵↵The association of Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 with host organisms suggests its potential role in the plant microbiome, where it may interact with other microbial communities and influence plant health. Understanding the growth conditions and environmental preferences of this strain is essential for studying its ecological interactions and potential impact on host plants. This bacterium exemplifies the intricate relationships within plant-associated microbiomes, highlighting the dynamic nature of microbial communities in agricultural ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas euvesicatoria Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living 316273 NC_007506.1 Bac0014482 Geobacter metallireducens GS-15 "Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) was isolated in the Potomac river just downstream from Washington D.C. in 1987. It is able to gain energy through the dissimilatory reduction of iron, manganese, uranium and other metals. In addition, G. metallireducens can oxidize several short chain fatty acids, alcohols and monoaromatic compounds including toluene and phenol with iron as the sole electron acceptor. Therefore, it is a possible agent for bioremediation. Geobacter metallireducens specifically expresses flagella and pili, only when grown on insoluble Fe(III) or Mn(IV) oxide, and is chemotactic towards Fe(II) and Mn(II) under these conditions. These results suggest that it senses when soluble electron acceptors are depleted and then synthesizes the appropriate appendages to search for, and establish contact with, insoluble Fe(III) or Mn(IV) oxide. (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter metallireducens GS-15 Negative Bacilli Yes 1 2 Anaerobic 30 Chemolithotroph Mesophilic Aquatic Free living Singles Nonsporulating No 269799 NC_007515.1 Bac0014483 Oleidesulfovibrio alaskensis G20 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Oleidesulfovibrio Oleidesulfovibrio alaskensis 207559 NC_007519.1 Bac0014484 Sulfurimonas denitrificans DSM 1251 "Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) is a sulfur-oxidizing, chemolithoautotroph Epsilonproteobacterium. Its genome was sequenced in order to have a representative of the sulfur-oxidizing Epsilonproteobacteria present in the coastal marine sediments in addition to the genomes of the deep-sea hydrothermal vents sulfur-oxidizing Epsilonproteobacteria Nitratiruptor sp. (strain SB155-2) and Sulfurovum sp. (strain NBC37-1). Based on its phenotype, S. denitrificans was originally named Thiomicrospora denitrificans. When the polyphyletic nature of Thiomicrospora was revealed, with members from both the Gammaproteobacteria and Epsilonproteobacteria, Thiomicrospora denitrificans was removed from the genus Thiomicrospora and placed within the genus Sulfurimonas. Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) has one of the largest genomes among the Epsilonproteobacteria sequenced to date, which likely provides the metabolic versatility necessary for survival in a habitat more complex than found in a metazoan host. Close relatives of S. denitrificans are motile while strain ATCC 33889 / DSM 1251 is nonmotile probably because of the interruption of a flagellar biosynthesis operon by a transposon. This nonmotility seems to have been acquired recently. (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas denitrificans DSM 1251 Negative Spirilla No 1 2 Anaerobic 20 Mesophilic Marine- Mud Free living Singles Nonsporulating No 326298 NC_007575.1 Bac0014485 Latilactobacillus sakei subsp. sakei 23K "Latilactobacillus sakei subsp. sakei 23K is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe, capable of thriving in various habitats. This strain demonstrates a versatile metabolic profile, allowing it to grow in both the presence and absence of oxygen, which enhances its adaptability to different environmental conditions. The ability to occupy multiple habitats suggests a potential role in diverse microbial communities, where it may contribute to fermentation processes or interact with other microorganisms.↵↵Latilactobacillus sakei subsp. sakei 23K is known for its importance in food microbiology, particularly in the fermentation of meat products, where it can influence flavor, texture, and preservation. Its facultative anaerobic nature may allow it to flourish in both aerobic and anaerobic environments, making it suitable for complex ecological niches where oxygen availability fluctuates. ↵↵This adaptability not only underscores its significance in food systems but also hints at its potential roles in broader ecological interactions, such as nutrient cycling and microbial succession in various environments. The strain's capability to thrive in diverse conditions may facilitate its survival and proliferation in natural ecosystems, reflecting the intricate relationships among microorganisms and their environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 314315 NC_007576.1 Bac0014486 Mycoplasma capricolum subsp. capricolum ATCC 27343 "Mycoplasma capricolum is primarily a pathogen of goats but it has also been found in sheep and cows. In goats, M.capricolum is highly destructive, causing important mortality and morbidity. Severe arthritis (polyarthritis) is the primary clinical manifestation. Parenteral or oral administration of M.capricolum results in acute conditions. The organism progresses in the form of septicemia, with severe involvement of the joints leading to permanent lameness. (EBI Integr8)" Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum ATCC 27343 Negative Cocci No 1 1 Facultative 37 Mesophilic HostAssociated Free living Goat Singles Nonsporulating No 340047 NC_007633.1 Bac0014487 Hahella chejuensis KCTC 2396 "Hahella chejuensis strain KCTC 2396 is a marine red-pigmented gammaproteobacterium belonging to the Oceanospiralles clade. It was originally isolated from the coastal marine sediment of the southernmost island in Korea. It consists of a single circular chromosome and contains 6783 predicted genes. H.chejuensis is a heterotrophic organism living on various resources from mineral to organic materials and even other aquatic organisms. It produces a red pigment, identified as prodigiosin, which has a very efficient lytic activity against the dinoflagellate Cochlodinium polykrikoides. Increases in the population of certain dinoflagellates result in phenomena called algal blooms or red tides, which have become more frequent in recent years throughout the world in the coastal waters. Red tides affect the health of human and marine organisms but also regional economies and marine ecosystems. Hahella chejuensis possesses a complete repertoire of enzyme for central carbon metabolism, including glycolysis, pentose phosphate pathway and TCA cycle as well as those required for biosynthesis of nucleotides and 20 amino acids. Two sets of genes coding for flagellar biosynthesis, type III secretion systems and F0F1-type ATP synthesis have been identified. This multiplicity is more likely to originate from horizontal transfer rather than from a gene duplication inside H.chejuensis genome. Horizontal gene transfer seems to have played an essential role in shaping H.chejuensis as it appears to have at least 69 genomic islands. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Hahellaceae Hahella Hahella chejuensis KCTC 2396 Negative Bacilli Yes 1 2 Facultative Heterotroph Mesophilic Aquatic Free living No 349521 NC_007645.1 Bac0014488 Methanosphaera stadtmanae DSM 3091 "Methanosphaera stadtmanae, the first human archaeal commensal whose genome has been sequenced, thrives in the human intestine, where methanol is a product of pectin degradation by Bacteroides species and other anaerobic bacteria. This human intestinal inhabitant can generate methane only by reduction of methanol with H2 and is dependent on acetate as a carbon source. It has the most restricted energy metabolism of all methanogenic archaea. The genome lacks 37 CDS present in the genomes of all other methanogens. Among these are the CDS for synthesis of molybdopterin (which is required for the enzyme catalyzing the first step of methanogenesis from CO2 + H2) and for synthesis of the CO dehydrogenase/acetyl-coenzyme A synthase complex, which explains why M. stadtmanae cannot reduce CO2 to methane or oxidize methanol to CO2 and why this archaeon is dependent on acetate for biosynthesis of cell components. (HAMAP: METST)" Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae DSM 3091 Cocci No 1 1 Anaerobic 36 Lithotroph Mesophilic HostAssociated Free living Homo sapiens Pairs- Tetrads No 339860 NC_007681.1 Bac0014489 Sodalis glossinidius str. 'morsitans' "Sodalis glossinidius (strain morsitans) is a maternally transmitted endosymbiont of tsetse flies and resides primarily intra- and extracellularly in the host midgut and can also be found in hemolymph. Its genome consists of a single circular chromosome and three plasmids. It has a coding capacity of only 51% and contains 972 pseudogenes. Several lines of evidence indicate that Sodalis' association with its host is relatively recent: identical 16S rDNA sequences were obtained from Sodalis from different tsetse hosts, Sodalis can be successfully cultivated on insect cells and subsequently in cell-free medium, the Sodalis genome is much larger than genomes of insect obligate symbionts and finally Sodalis contains more than 1800 functional orthologs to E.coli, a feature indicating that it possesses a large functional repertoire. Sodalis glossinidius seems to have retained a large number of the capabilities of free-living bacteria such as functional pathways for glycolysis, gluconeogenesis, the TCA cycle and the pentose phosphate pathway. It encodes only three intact PEP-carbohydrate phosphotransferase systems and lacks glycolytic enzymes such as galactosidase and glucosidase. The pathways for the synthesis of all amino acids except alanine are present. Many of the genes required for amino acid degradation are missing. It has only five sigma factors and eight signal transduction systems. It seems to rely on the direct transport of heme/haemoglobin via a specific ABC transporter. The ferrous iron transporter FeoA is intact but FeoB is degraded and the global regulator Fur is missing. The chromosome encodes three putative Type-III secretion systems that are present in different clusters, the Sodalis symbiosis regions, referred to as SSR-1, SSR-2 and SSR-3. Despite an apparent lack of motility, ninety flagellar-related genes have been identified in two distinct clusters, the second of which contains 15 pseudogenes. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bruguierivoracaceae Sodalis Sodalis glossinidius morsitans Negative Rod No 1 2 Microaerophilic 25 Mesophilic HostAssociated Symbiotic Glossina morsitans morsitans Nonsporulating No 343509 NC_007712.1 Bac0014490 Anaeromyxobacter dehalogenans 2CP-C "The delta-Proteobacterium Anaeromyxobacter dehalogenans utilizes halogenated compounds, such as 2-chlorophenol, 2,6-dichlorophenol, 2,5-dichlorophenol, and 2-bromophenol, as growth-supporting electron acceptors (halorespiration). Anaeromyxobacter dehalogenans exhibits metabolic versatility, and grows under a variety of redox conditions. Oxidized metal species such as U(VI) and Fe(III) (including ferric oxyhydroxide), anthraquinone disulfonate (AQDS), halogenated phenols, oxygen, nitrate, nitrite, and fumarate are used in terminal electron accepting processes (TEAPs). Also, Anaeromyxobacter dehalogenans demonstrates great electron donor versatility, and couples electron acceptor reduction to the oxidation of a variety of compounds including formate, hydrogen, acetate, succinate, pyruvate, and glucose. A. dehalogenans tolerates high concentrations of reduced products such as phenol or ammonium and has been found to be the predominant metal reducing populations at uranium-contaminated sites that are characterized by changing redox conditions and low pH. A feature that distinguishes A. dehalogenans from other reductively dechlorinating and metal-reducing populations is this organism's ability to both use acetate and hydrogen as a source of reducing equivalents. Sequencing its genome will provide relevant information regarding reductive dehalogenase genes and the organization of reductive dehalogenase operons. Such information is critical for the design of nucleic acid-based tools to detect, monitor and quantify functional genes involved in reductive dechlorination processes at contaminated sites. (EBI Integr8)" Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-C Negative Rod Yes 1 2 Aerobe; anaerobe 30 Heterotroph Mesophilic Terrestrial Free living Sporulating No 290397 NC_007760.1 Bac0014491 Frankia casuarinae "Frankia casuarinae is a Gram-positive, filamentous bacterium that plays a significant role in nitrogen fixation within various ecological niches. This microbe exhibits a characteristic filamentous morphology, forming intricate networks that facilitate its survival and interaction with host plants. As a chemoorganotroph, Frankia casuarinae derives its energy from organic compounds, which allows it to thrive in diverse habitats, indicating its versatile metabolic capabilities.↵↵The bacterium is strictly aerobic, requiring oxygen for its growth and metabolic processes. This oxygen requirement influences its distribution and ecological functions, particularly in symbiotic relationships with certain plant species, notably those in the Casuarina genus. The ability of Frankia casuarinae to establish symbiotic associations with these plants enhances nitrogen availability in nutrient-poor soils, thereby contributing to soil fertility and ecosystem productivity.↵↵In summary, Frankia casuarinae exemplifies a specialized filamentous bacterium that not only adapts to multiple habitats but also plays a crucial role in promoting nitrogen cycling and enhancing plant growth. Its interactions with host plants underscore the importance of microbial symbionts in terrestrial ecosystems, particularly in areas where nitrogen is a limiting factor for plant development." Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia casuarinae Positive Filamentous No 1 Aerobe Chemoorganotroph Mesophilic Multiple Symbiotic Filaments 106370 NC_007777.1 Bac0014492 Rhodopseudomonas palustris HaA2 "Rhodopseudomonas bacteria are purple nonsulfur phototrophic organisms that can be found many types of marine environments and soils. It converts sunlight into energy and converts atmospheric carbon dioxide into biomass. R. palustris has the potential to be very useful because it can degrade and recycle several different aromatic compounds that make up lignin, the ""main constituent of wood and the second most abundant polymer on earth"" (DOE). Thus, this bacteria and those like it may be useful in removing these types of waste from the environment. In addition, R. palustris converts N2 into NH4 and H2, which can be used as a biofuel.Rhodopseudomonas palustris, whose genome has been sequenced by the DOE Joint Genome Institute, has a certain genetic system that allows genes to be moved in and out of the bacterium easily. This allows researchers to target certain genes for mutagenesis and ""rapidly apply information gained from genome sequencing to the developing area of functional genomics"" (DOE). The genome, which is 5.46 Mb in length and is comprised of about 4,800 genes, encodes for proteins involved in a verstile and flexible metabolism as well as a cellular differentiation and a budding reproduction. It is similar to the genome of Bradyrhizobium japonicum including many homologous genes, such as terminal oxidase genes.Rhodopseudomonas bacteria have a photosynthetic reaction center containing bacteriochlorophyll b that was first found in 1963 and classified 3 years later and have a range of metabolic processes (Lang and Oesterhelt 1989). R. viridis is an anaerobic, photosynthetic bacterium that has microaerophilic growth capacity. It is one of the most metabolically versatile bacteria known with the ability to convert carbon dioxide gas into cell mass and nitrogen gas into ammonia and hydrogen gas. R. palustris has an interesting reproduction through budding and asymmetric cell division: one daughter cell is a motile swarmer cell and the other is a stalked nonmotile cell. Another major developmental process of R. palustris is the differentiation of ""an elaborate system of intracytoplasmic membrane vesicles when cells run out of oxygen and are placed in light"" (DOE). These intracytoplasmic membranes, which are named thylakoids, contain the photosynthetic reaction centers and occur only in anaerobic conditions. The thylakoids are integral membrane protein-reaction center complexes that catalyze light-induced electron transport through the photosynthetic membrane. (Lang and Oesterhelt 1989) They also house photosynthetic pigments and associated proteins (DOE). Also during anaerobic conditions, R. palustris increases its biomass by absorbing carbon dioxide and ""degrading organic compounds including such toxic compounds as 3-chlorobenzoateto cellular building blocks"" (DOE). When oxygen is available, the bacterium degrades several types of carbon-containing compounds like sugars, lignin, monomers, and methanol through respiration (DOE).Studies have shown that Rhodopseudomonas viridis grows well at 30C in light under at a 13 hour generation and under microaerophilic growth conditions in the dark at a 24 hour generation time. In addition, the bacterium did not grow anaerobically in the darkness or aerobically in the light. The bacterium was able to use dimethyl sulfoxide, potassium nitrate, or sodium nitrite as a terminal electron acceptor instead of oxygen. (Lang and Oesterhelt 1989) In general, this bacterium can be found in many different soils and marine environments.Rhodopseudomonas palustris, along with Rhodospirillum rubrum and Rhodospirillum photometricum, grow phototrophically on several two- and three-carbon halocarboxylic acids in the presence of CO2 through reductive dehalogenation and assimilation of the resulting acid. This ability to utilize halocarboxylic acids suggests that they might be able to assist in the removal of these enironmental pollutants from illuminated anaerobic habitats like lakes, waste lagoons, sediments of ditches and ponds, mud, and moise soil (McGrath and Harfoot 1997). This bacterium also has the ability to convert N2 into NH4 and H2, which can be used as a biofuel.(From http://microbewiki.kenyon.edu/index.php/Rhodopseudomonas) (MicrobeWiki: Rhodopseudomonas)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris HaA2 Negative Bacilli Yes 1 2 Facultative 25 Phototroph Mesophilic Multiple Free living Singles No 316058 NC_007778.1 Bac0014493 Staphylococcus aureus subsp. aureus USA300_FPR3757 "Gram-positive nonmotile coccus that grows in aerobic and anaerobic conditions, in which it forms grape-like clusters. Staphylococcus aureus is one of the major causes of community- acquired and hospital-acquired infections. It produces numerous toxins including superantigens that cause unique disease entities such as toxic-shock syndrome and staphylococcal scarlet fever.This strain includes 2 phage phiSaST5K and phiN315; phiN315 is also found in strain N315 (STAAN). (HAMAP: STAA4)" Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus FPR3757 Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Homo sapiens Clusters - Singles Nonsporulating 451515 NC_007790.1 Bac0014494 Novosphingobium aromaticivorans DSM 12444 "Novosphingobium (Sphingomonas) aromaticivorans strain DSM 12444 is an alphaproteobacterium and is characterized as a Gram-negative, non-spore forming rod displaying a single polar flagellum when it is motile. It is yellow pigmented and obligately aerobic. Unlike typical gram-negative bacteria, it does not have lipopolysaccharide, but rather glycosphingolipid, which is usually a membrane component of eukaryotic cells. The thermoreversible gel formation and solution viscosity properties of these glycosphingolipids (sphingans) make them of technical interest and useful in applications for a wide range of food and pharmaceutical products. The role of sphingans has been proposed to be important in colonization of eukaryotic organisms including plants, marine organisms, and humans by Novosphingobium. N. aromaticivorans strains have been isolated from a wide variety of sources including soil, both marine and fresh waters, marine life, and from plants. Many of the first isolates assigned to this genus (S. paucimobilis) were derived from human clinical specimens or water samples taken from hospital environments and members of this species have been subsequently shown to behave as opportunistic pathogens. More recently, N. aromaticivorans has been linked to the death of coral reefs off the Florida coast. Although there is an emerging role of Novosphingobium species in disease, members of this genus are best known for their ability to degrade a wide variety of aromatic hydrocarbons. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium aromaticivorans DSM 12444 Negative Bacilli Yes 1 2 Aerobic Mesophilic Multiple Free living Homo sapiens No 279238 NC_007794.1 Bac0014495 Anaplasma phagocytophilum str. HZ Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma phagocytophilum 212042 NC_007797.1 Bac0014496 Neorickettsia sennetsu str. Miyayama "Neorickettsia sennetsu (strain Miyayama) is an intracellular vector-borne pathogen that causes human ehrlichiosis. Unknown trematodes are suspected to be the vector and reservoir of N.sennetsu. N.sennetsu is the causative agent of sennetsu ehrlichiosis, an infectious mononuclear-like disease with fever, fatigue, general malaise and lymphadenopathy. It replicates in monocytes/macrophages. The genome of Neorickettsia sennetsu is made up of a single chromosome. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia sennetsu str. Miyayama Negative Bacilli No 1 2 Aerobic Mesophilic Multiple Free living Homo sapiens Yes 222891 NC_007798.1 Bac0014497 Jannaschia sp. CCS1 "Jannaschia sp. strain CCS1 is a member of the Roseobacter lineage (alpha-Proteobacteria), an ecologically relevant taxon of marine bacteria abundant in coastal and open ocean surface waters. CCS1 is an aerobic anoxygenic phototroph (AAnP), that is, it is incapable of anaerobic photosynthesis, and performs efficient photoinduced electron transfer only under aerobic conditions. However it still uses bacteriochlorophyll a to harvest energy from light without oxygen formation. AAnPs have recently been found in ocean surface waters, where they make up a significant fraction of the marine bacterioplankton community, are responsible for a share of the oceanic photosynthetic electron transport flux, and have important implications for the ocean carbon cycle. Jannaschia CCS1 was isolated from Pacific coastal waters on low-nutrient seawater medium. It is motile, grows slowly, and like other marine AAnPs, produces bacteriochlorophyll a when grown in the dark. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Jannaschia Jannaschia sp. CCS1 CCS1 Negative Bacilli No 1 2 Aerobic 30 Phototroph- Heterotroph Mesophilic Aquatic Free living Chains Nonsporulating No 290400 NC_007801.1 Bac0014498 Desulfitobacterium hafniense Y51 "The tetrachloroethene (PCE)-dechlorinating bacterium Desulfitobacterium hafniense Y51 has the ability to dechlorinate halogenated compounds under anaerobic conditions by dehalorespiration. This genome contains only two reductive dehalogenase genes, a lower number than reported in most other dehalorespiring strains. A remarkable feature of the genome is the large number of O-demethylase paralogs, which allow utilization of lignin-derived phenyl methyl ethers as electron donors. The large genome reveals a more versatile microorganism that can utilize a larger set of specialized electron donors and acceptors than previously thought. This is in sharp contrast to the PCE-dechlorinating strain Dehalococcoides ethenogenes 195, which has a relatively small genome with a narrow metabolic repertoire. (HAMAP: DESHY)" Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium hafniense Y51 Negative Bacilli Yes 1 1 Anaerobic Mesophilic Specialized Free living Pairs- Chains- Singles Sporulating No 138119 NC_007907.1 Bac0014499 Escherichia coli UTI89 "10) polysomes or poly-ribosomesThe outer cell membrane or outer membrane (OM) consists of a lipid bilayer structure composed of an outer layer or leaflet consisting of lipopolysaccharide (LPS) and an inner leaflet consisting of phospholipids. LPS is composed of 3 components: lipid A, a branched sugar chain and the O-antigen. Lipid A is made of 2 glucosamines attached to phosphates and linked to C14 3-hydroxy myristic acid. The branched sugar consists of two types of sugars, one a heptose and the other keto-deoxyoctonoic acid. The O-antigen consists of a long (up to 40 sugars) carbohydrate chain. Each LPS unit is covalently linked to form a trimer through pyrophosphate linkages to the sugars of lipid A. LPS is highly immunogenic and frequently toxic (i.e. E. coli O157). The other major components of the outer membrane are proteins -- largely consisting of porins (approximately 60,000) which coexist with LPS. The outer membrane is a barrier that is quite resistant to chemicals and hydrophobic compounds, including antibiotics. Porins are passive diffusion channels that allow hydrophilic molecules (i.e. nutrients) of up to 800 daltons to pass through. The width of the outer membrane is about 10-15 nm.The cell wall, which lies just below the outer membrane is composed of peptidoglycan (also known as murein or Braun's lipoprotein) which, in turn, is covalently bound to the outer membrane. The cell wall prevents the cell from being osmotically lysed and gives the cell its characteristic shape. It is technically a single supermolecule. Peptidoglycan (PG) is a loosely (30%) cross-linked polymer consisting of covalently linked sugar and peptide units. The sugar units are N-acetylgulocsamine and N-acetylmuramic acid. The peptides are tetrapeptides consisting of L-Ala-D-Gly-DAP-D-Ala, where DAP is diaminopimelic acid. Peptidoglycan is synthesized via the insertion of rings (about 1100 in all) that grow from about 200 different locations around the cell (which translates to 250,000 copies of murein). The spacing of these PG growth rings is about 1.3 nm. In E. coli the peptidoglycan layer is very thin and may only be a monolayer.The inner membrane is composed of a lipid bilayer about 8 nm thick consisting of ~40% phospholipids and 60% protein. The phospholipids include phosphatidylethanolamine (75%), phosphatidylglycerol (18%), cardiolipin (5%) and phosphatidylyserine (2%). The lipid (fatty acid) chains are mostly C16 palmitic acid (43%), C16 palmitoleic acid (33%) and C18 vaccenic acid (24%), which form ester links to create the phospholipids. There are no sterols or steroids in the inner membrane of bacteria. Recall that mesophiles (like E. coli) tend to have fatty acids with shorter chains and more unsaturated fatty acids to maintain membrane fluidity. The inner membrane, in combination with the outer membrane (i.e. the cellular envelope) serves as an osmotic barrier, a nutrient-specific transporter, a lipid synthesizer, a peptidoglycan synthesizer, electron transport system, a place for assembly and secretion of envelope proteins, a mechanism for chromosomal segregation and a site for chemo-sensing. There exist a number of regions (~200 per cell) called Bayer's junctions where the inner (cytoplasmic) membrane contacts the outer membrane. It is not known what these junctions do.The periplasm, which is about 10 nm thick, occupies between 10 and 20 percent of the volume of an E. coli cell. It is the space between the inner and outer membrane and houses both proteins and the cell wall (peptidoglycan). It is thought to help in osmoregulation. The periplasm contains a number of proteins essential for nutrient binding, degradative enzymes (proteases, endonucleases), detoxifying enzymes (beta lactamase), peptidoglycan synthesis, cytochromes (electron transport) and chemotaxis or chemosensing proteins. The periplasm contains approximately 80,000 proteins.On the surface of the outer membrane can be found flagella. Flagella are rigid screw-like appendages (10-20 microns in length and approximately 25 nm wide) anchored to the outer membrane that rotate (clockwise or counterclockwise) in a propeller like fashion to facilitate bacterial movement. When flagella rotate counterclockwise this creates a pushing force that allows the bacterium to move (called a run). When flagella rotate clockwise the bacterium tumbles or twiddles. The change between a run and a twiddle is brought about by subtle changes to the structure of flagellar filament proteins (flagellin of FliC). Each flagellar filament is composed of 11 protofilaments wound in a bundled helix composed purely of flagellin. The orientation of these protofilaments (and the structure of the whole flagellar filament) is affected by small cumulative changes in the flagellin monomers brought on by chemo/osmotactic forces. Flagella are remarkably complex motor systems consisting of up to 50 different proteins which spontaneously self-assemble to form nano-scale rotors, stators and power (ATP) supplies. There are three components to a flagellum: the filament (composed of 30,000-40,000 flagellin monomers), the hook (which differ between G+ and G- cells) and the basal body (motor and power supply). A typical bacterium may have from 5-20 flagella. In E. coli, the flagellar are arranged in a peritrichous fashion (meaning they are scattered uniformly around the cell).Fimbrae or pili are thin appendages commonly found on G- cells. They are approximately 6.5 nm in diameter and between 200 and 2000 nm in length, meaning that they are smaller than flagella. A cell may have from 100-300 pili or fimbrae, meaning that they are much more numerous. The primary component in pili is the papA protein, a 16 kD protein which self-assembles into a helical repeat creating a hollow (1.5 nm) core of superstructured protein. Approximately 300 (short) to 3000 (long) papA proteins are needed to make a single pilus. The term fimbrae is used when referring to filaments responsible for surface attachment. The term pili refers to filaments used to mediate attachment to other bacteria (bacterial conjugation or DNA transfer).Also on the surface (i.e. outside the outer membrane) of E. coli are crystalline-like surface proteins which self-assemble to form S-layers. These S proteins form complex, rigid polyprotein networks that may be important for cellular protection and adherence.The cytoplasm is where all other major components of an E. coli cell reside. The cytoplasm contains the chromosomal DNA (about 2.3 genomes worth in an actively dividing cell), the RNA (tRNA, mRNA and rRNA), the ribosomes or polyribosomes (for protein synthesis), inclusion bodies or storage granules, essential ions (120 million), small organic molecules (18 million) and about 2.1 million proteins. The region of the cytoplasm containing the chromosome is called the nucleoid. It contains up to 2 chromosomal equivalents (in rapidly dividing cells). Each chromosome measures 1.55 mm in circumference (490 microns in diameter). The chromosome interacts with tens of thousands of nuclear proteins (HU, IHF, H-NS) with their being sufficient HU protein to bind the DNA every 200 bp (40,000+ monomers for each chromosome, HU dimerizes). These pseudo-histones condense the chromosome into a body (called a nucleiod) about 17 microns in diameter. The prokaryotic ribosome is composed of 2 subunits, the 30S and the 50S subunits. The 20S subunit has 21 proteins bound to the 16S (1700 nt) rRNA. The 50S subunit has 34 proteins bound to the 23S (3700 nt) and 5s (120 nt) rRNA. The storage granules or inclusions include metachromatic granules (which contain polyphosphate), glycogen granules (which store polyglucose) and lipid inclusions (which contain poly-B-hydroxybutyrate or PHB). Bacteria do not have a nucleus or other complex organelles (such as mitochondria, endoplasmic reticulum or chloroplasts) as found in eukaryotic cells. This simple interior structure makes bacterial cells much simpler to model and much easier to understand than eukaryotic cells. (From http://redpoll.pharmacy.ualberta.ca/CCDB/intron_new.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli UTI89 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 364106 NC_007946.1 Bac0014500 Polaromonas sp. JS666 "Polaromonas (strain JS666 / ATCC BAA-500), a member of the family Comamonadaceae in the beta-proteobacteria, is a novel, aerobic, cis-dichloroethene (cDCE)-assimilating organism with optimum growth at 20-25 degrees C. It is closely related to the Antarctic marine isolate Polaromonas vacuolata. The substantial phylogenetic distance from other known aerobic alkene-assimilating bacteria suggests a novel biochemistry for cDCE oxidation. Polaromonas is the only aerobic organism known to use cDCE for energy and growth. cDCE is a common groundwater contaminant derived mainly from incomplete anaerobic reductive dechlorination of the widely used chlorinated solvents tetrachloroethene and trichloroethene. The toxicity and suspected carcinogenicity of cDCE qualifies it as an EPA priority pollutant. Since growth-coupled oxidation of cDCE does not appear to be common at field sites, JS666 is a prime candidate for bioremediation at sites where cDCE has migrated into aerobic zones. Recently, a Polaromonas was reported to be the organism responsible for in situ biodegradation of naphthalene at a coal-tar-contaminated site. Closely related strains have also been found recently in a variety of contaminated sites, but their roles are unknown. The recent isolation of the above strains suggests that members of the genus Polaromonas play a major role in the subsurface degradation of environmental contaminants that has been overlooked to date because of an emphasis on mesophilic bacteria. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. JS666 Negative Bacilli No 1 2 Aerobic 20 Mesophilic Multiple Free living No 296591 NC_007948.1 Bac0014501 Rhodopseudomonas palustris BisB5 "Rhodopseudomonas bacteria are purple nonsulfur phototrophic organisms that can be found many types of marine environments and soils. It converts sunlight into energy and converts atmospheric carbon dioxide into biomass. R. palustris has the potential to be very useful because it can degrade and recycle several different aromatic compounds that make up lignin, the ""main constituent of wood and the second most abundant polymer on earth"" (DOE). Thus, this bacteria and those like it may be useful in removing these types of waste from the environment. In addition, R. palustris converts N2 into NH4 and H2, which can be used as a biofuel.Rhodopseudomonas palustris, whose genome has been sequenced by the DOE Joint Genome Institute, has a certain genetic system that allows genes to be moved in and out of the bacterium easily. This allows researchers to target certain genes for mutagenesis and ""rapidly apply information gained from genome sequencing to the developing area of functional genomics"" (DOE). The genome, which is 5.46 Mb in length and is comprised of about 4,800 genes, encodes for proteins involved in a verstile and flexible metabolism as well as a cellular differentiation and a budding reproduction. It is similar to the genome of Bradyrhizobium japonicum including many homologous genes, such as terminal oxidase genes.Rhodopseudomonas bacteria have a photosynthetic reaction center containing bacteriochlorophyll b that was first found in 1963 and classified 3 years later and have a range of metabolic processes (Lang and Oesterhelt 1989). R. viridis is an anaerobic, photosynthetic bacterium that has microaerophilic growth capacity. It is one of the most metabolically versatile bacteria known with the ability to convert carbon dioxide gas into cell mass and nitrogen gas into ammonia and hydrogen gas. R. palustris has an interesting reproduction through budding and asymmetric cell division: one daughter cell is a motile swarmer cell and the other is a stalked nonmotile cell. Another major developmental process of R. palustris is the differentiation of ""an elaborate system of intracytoplasmic membrane vesicles when cells run out of oxygen and are placed in light"" (DOE). These intracytoplasmic membranes, which are named thylakoids, contain the photosynthetic reaction centers and occur only in anaerobic conditions. The thylakoids are integral membrane protein-reaction center complexes that catalyze light-induced electron transport through the photosynthetic membrane. (Lang and Oesterhelt 1989) They also house photosynthetic pigments and associated proteins (DOE). Also during anaerobic conditions, R. palustris increases its biomass by absorbing carbon dioxide and ""degrading organic compounds including such toxic compounds as 3-chlorobenzoateto cellular building blocks"" (DOE). When oxygen is available, the bacterium degrades several types of carbon-containing compounds like sugars, lignin, monomers, and methanol through respiration (DOE).Studies have shown that Rhodopseudomonas viridis grows well at 30C in light under at a 13 hour generation and under microaerophilic growth conditions in the dark at a 24 hour generation time. In addition, the bacterium did not grow anaerobically in the darkness or aerobically in the light. The bacterium was able to use dimethyl sulfoxide, potassium nitrate, or sodium nitrite as a terminal electron acceptor instead of oxygen. (Lang and Oesterhelt 1989) In general, this bacterium can be found in many different soils and marine environments.Rhodopseudomonas palustris, along with Rhodospirillum rubrum and Rhodospirillum photometricum, grow phototrophically on several two- and three-carbon halocarboxylic acids in the presence of CO2 through reductive dehalogenation and assimilation of the resulting acid. This ability to utilize halocarboxylic acids suggests that they might be able to assist in the removal of these enironmental pollutants from illuminated anaerobic habitats like lakes, waste lagoons, sediments of ditches and ponds, mud, and moise soil (McGrath and Harfoot 1997). This bacterium also has the ability to convert N2 into NH4 and H2, which can be used as a biofuel.(From http://microbewiki.kenyon.edu/index.php/Rhodopseudomonas) (MicrobeWiki: Rhodopseudomonas)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris BisB5 Negative Bacilli Yes 1 2 Facultative 25 Phototroph Mesophilic Multiple Free living Singles No 316057 NC_007958.1 Bac0014502 Chromohalobacter israelensis DSM 3043 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter israelensis 290398 NC_007963.1 Bac0014503 Psychrobacter cryohalolentis K5 "The genus Psychrobacter is comprised primarily of halotolerant, psychrophilic to mesophilic, aerobic, non-motile, Gram-negative coccobacilli and was first described as a separate genus within the gamma-proteobacteria in 1986. Psychrobacter species are capable of reproducing at temperatures ranging from -10 to 40 degrees Celsius. Psychrobacter species have been isolated primarily from low temperature marine environments including Antarctic sea ice, ornithogenic soil, and sediments; the stomach contents of the Antarctic krill Euphausia; sea water (NW pacific ocean, 300 m depth); the deep sea; and the internal tissues of a marine ascidian. Psychrobacter species have also been isolated from a pigeon feces bioaerosol, a poultry carcass, fermented sea food, human blood and tissues, and the lungs of an infected lamb. Psychrobacter cryohalolentis K5 (formerly known as Psychrobacter cryopegella) was isolated from a cryopeg (saline water lens) within 40 thousand-year-old Siberian permafrost where the in situ temperature is -9 to -11 degrees Celsius. The cryopeg samples were obtained from the Kolyma-Indigirka lowland, Siberia by David Gilichinsky (Russian Academy of Sciences, Pushchino, Russia). Psychrobacter cryohalolentis K5 is a small, non-motile coccoid rod often found in pairs. On marine agar it produces smooth, non-pigmented colonies. This strain was selected for sequencing based on its ability to reproduce at -10 degrees Celsius with a generation time of 39 days, rapid growth at low temperatures, close relationship to Psychrobacter 273-4, and the different permafrost niche it was isolated from (cryopeg) relative to Psychrobacter 273-4. Additional studies of Psychrobacter cryohalolentis K5 have examined critical temperature, growth efficiency, and protein expression at subzero temperatures. Specific genes and molecular characteristics required for low-temperature growth can be identified via comparative genomics, which is aided by the comparison of close relatives.In addition, genomic information will greatly enhance the interpretation of protein expression at subzero temperatures already examined in this organism. The long-term survival of microorganisms at low temperatures is relevant to the search for and study of microbes that survive and grow in cold and sub-zero environments (deep sea, Antarctic and Arctic permafrost and endolithic environments, Mars, etc.). Growth and survival of low temperatures is also relevant to food storage and processing, general mechanisms of bacterial survival, and stress responses of microorganisms. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter cryohalolentis Negative Bacilli No 1 2 Aerobic 16 Psychrophilic Multiple Free living Pairs non-spore-forming No 335284 NC_007968.1 Bac0014504 Streptococcus pyogenes MGAS10270 "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes MGAS10270 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 370552 NC_008022.1 Bac0014505 Streptococcus pyogenes MGAS10750 "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes MGAS10750 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 370554 NC_008024.1 Bac0014506 Pseudomonas entomophila L48 "P. entomophila is a bacterial strain isolated from a fruit fly from Guadeloupe. Upon ingestion it kills Drosophila melanogaster larvae and adults, as well as insects from other orders. Its persistence in the insect gut triggers a local and systemic immune response in the insect, making it a useful model for insect pathogenesis; indeed it is the first natural pathogen of D.melanogaster known. P. entomophila is unusual in that it does not have a type III or type IV secretion system, one of which is usually found in pathogens. The mode by which it kills is not clear, although the genome encodes several insecticidal toxins, a diffusible haemolytic activity, several lipases, a number of extracellular proteases and potential adhesions which cluster with type I or II secretion system proteins. It may also be able to produce hydrogen cyanide and novel secondary metabolites which could contribute to its lethality. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas entomophila L48 Negative Bacilli Yes 1 2 Aerobic Heterotroph Mesophilic Multiple Free living Singles Nonsporulating No 384676 NC_008027.1 Bac0014507 Helicobacter pylori HPAG1 "Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori HPAG1 Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 357544 NC_008086.1 Bac0014508 Myxococcus xanthus DK 1622 "Myxococcus xanthus is a Gram-negative rod-shaped bacterium. Under starvation conditions, it undergoes a developmental process in which roughly 100,000 individual cells aggregate to form a structure called the fruiting body. Inside this structure, rod-shaped cells differentiate into spherical, thick-walled spores. Biochemical changes, such as the synthesis of new proteins and alterations in the cell wall, occur in parallel to the morphological changes. During the aggregation of M.xanthus cells into fruiting bodies, dense ridges of cells appear to move in traveling waves called ripples. Coordinated cell motility, or swarming, also occurs during vegetative growth, facilitating predatory feeding by increasing the extracellular concentration of digestive enzymes secreted by the bacteria. M.xanthus moves across surfaces by means of a poorly understood mechanism known as gliding motility. (EBI Integr8)" Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus DK 1622 Negative Bacilli Yes 1 2 Aerobic 20 Chemoorganotroph Mesophilic Terrestrial Free living Singles Sporulating No 246197 NC_008095.1 Bac0014509 Helicobacter acinonychis str. Sheeba "Helicobacter acinonychis strain Sheeba is the causative agent of severe gastritis in large felines such as tigers, lions and cheetahs. H. acinonychis arose 200000 years ago via a host jump of H.pylori from early humans. Its genome is made up of one chromosome and one plasmid. It possesses a large number of highly fragmented genes, many encoding outer membrane proteins. These genes could have been destroyed in order to bypass deleterious responses from the feline host immune system. Five genes are present that are involved in sialylation of cell surface carbohydrates and that were probably acquired by horizontal gene transfer. (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter acinonychis Sheeba Negative Spirilla Yes 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Lion Singles Nonsporulating 382638 NC_008229.1 Bac0014510 Escherichia coli 536 "10) polysomes or poly-ribosomesThe outer cell membrane or outer membrane (OM) consists of a lipid bilayer structure composed of an outer layer or leaflet consisting of lipopolysaccharide (LPS) and an inner leaflet consisting of phospholipids. LPS is composed of 3 components: lipid A, a branched sugar chain and the O-antigen. Lipid A is made of 2 glucosamines attached to phosphates and linked to C14 3-hydroxy myristic acid. The branched sugar consists of two types of sugars, one a heptose and the other keto-deoxyoctonoic acid. The O-antigen consists of a long (up to 40 sugars) carbohydrate chain. Each LPS unit is covalently linked to form a trimer through pyrophosphate linkages to the sugars of lipid A. LPS is highly immunogenic and frequently toxic (i.e. E. coli O157). The other major components of the outer membrane are proteins -- largely consisting of porins (approximately 60,000) which coexist with LPS. The outer membrane is a barrier that is quite resistant to chemicals and hydrophobic compounds, including antibiotics. Porins are passive diffusion channels that allow hydrophilic molecules (i.e. nutrients) of up to 800 daltons to pass through. The width of the outer membrane is about 10-15 nm.The cell wall, which lies just below the outer membrane is composed of peptidoglycan (also known as murein or Braun's lipoprotein) which, in turn, is covalently bound to the outer membrane. The cell wall prevents the cell from being osmotically lysed and gives the cell its characteristic shape. It is technically a single supermolecule. Peptidoglycan (PG) is a loosely (30%) cross-linked polymer consisting of covalently linked sugar and peptide units. The sugar units are N-acetylgulocsamine and N-acetylmuramic acid. The peptides are tetrapeptides consisting of L-Ala-D-Gly-DAP-D-Ala, where DAP is diaminopimelic acid. Peptidoglycan is synthesized via the insertion of rings (about 1100 in all) that grow from about 200 different locations around the cell (which translates to 250,000 copies of murein). The spacing of these PG growth rings is about 1.3 nm. In E. coli the peptidoglycan layer is very thin and may only be a monolayer.The inner membrane is composed of a lipid bilayer about 8 nm thick consisting of ~40% phospholipids and 60% protein. The phospholipids include phosphatidylethanolamine (75%), phosphatidylglycerol (18%), cardiolipin (5%) and phosphatidylyserine (2%). The lipid (fatty acid) chains are mostly C16 palmitic acid (43%), C16 palmitoleic acid (33%) and C18 vaccenic acid (24%), which form ester links to create the phospholipids. There are no sterols or steroids in the inner membrane of bacteria. Recall that mesophiles (like E. coli) tend to have fatty acids with shorter chains and more unsaturated fatty acids to maintain membrane fluidity. The inner membrane, in combination with the outer membrane (i.e. the cellular envelope) serves as an osmotic barrier, a nutrient-specific transporter, a lipid synthesizer, a peptidoglycan synthesizer, electron transport system, a place for assembly and secretion of envelope proteins, a mechanism for chromosomal segregation and a site for chemo-sensing. There exist a number of regions (~200 per cell) called Bayer's junctions where the inner (cytoplasmic) membrane contacts the outer membrane. It is not known what these junctions do.The periplasm, which is about 10 nm thick, occupies between 10 and 20 percent of the volume of an E. coli cell. It is the space between the inner and outer membrane and houses both proteins and the cell wall (peptidoglycan). It is thought to help in osmoregulation. The periplasm contains a number of proteins essential for nutrient binding, degradative enzymes (proteases, endonucleases), detoxifying enzymes (beta lactamase), peptidoglycan synthesis, cytochromes (electron transport) and chemotaxis or chemosensing proteins. The periplasm contains approximately 80,000 proteins.On the surface of the outer membrane can be found flagella. Flagella are rigid screw-like appendages (10-20 microns in length and approximately 25 nm wide) anchored to the outer membrane that rotate (clockwise or counterclockwise) in a propeller like fashion to facilitate bacterial movement. When flagella rotate counterclockwise this creates a pushing force that allows the bacterium to move (called a run). When flagella rotate clockwise the bacterium tumbles or twiddles. The change between a run and a twiddle is brought about by subtle changes to the structure of flagellar filament proteins (flagellin of FliC). Each flagellar filament is composed of 11 protofilaments wound in a bundled helix composed purely of flagellin. The orientation of these protofilaments (and the structure of the whole flagellar filament) is affected by small cumulative changes in the flagellin monomers brought on by chemo/osmotactic forces. Flagella are remarkably complex motor systems consisting of up to 50 different proteins which spontaneously self-assemble to form nano-scale rotors, stators and power (ATP) supplies. There are three components to a flagellum: the filament (composed of 30,000-40,000 flagellin monomers), the hook (which differ between G+ and G- cells) and the basal body (motor and power supply). A typical bacterium may have from 5-20 flagella. In E. coli, the flagellar are arranged in a peritrichous fashion (meaning they are scattered uniformly around the cell).Fimbrae or pili are thin appendages commonly found on G- cells. They are approximately 6.5 nm in diameter and between 200 and 2000 nm in length, meaning that they are smaller than flagella. A cell may have from 100-300 pili or fimbrae, meaning that they are much more numerous. The primary component in pili is the papA protein, a 16 kD protein which self-assembles into a helical repeat creating a hollow (1.5 nm) core of superstructured protein. Approximately 300 (short) to 3000 (long) papA proteins are needed to make a single pilus. The term fimbrae is used when referring to filaments responsible for surface attachment. The term pili refers to filaments used to mediate attachment to other bacteria (bacterial conjugation or DNA transfer).Also on the surface (i.e. outside the outer membrane) of E. coli are crystalline-like surface proteins which self-assemble to form S-layers. These S proteins form complex, rigid polyprotein networks that may be important for cellular protection and adherence.The cytoplasm is where all other major components of an E. coli cell reside. The cytoplasm contains the chromosomal DNA (about 2.3 genomes worth in an actively dividing cell), the RNA (tRNA, mRNA and rRNA), the ribosomes or polyribosomes (for protein synthesis), inclusion bodies or storage granules, essential ions (120 million), small organic molecules (18 million) and about 2.1 million proteins. The region of the cytoplasm containing the chromosome is called the nucleoid. It contains up to 2 chromosomal equivalents (in rapidly dividing cells). Each chromosome measures 1.55 mm in circumference (490 microns in diameter). The chromosome interacts with tens of thousands of nuclear proteins (HU, IHF, H-NS) with their being sufficient HU protein to bind the DNA every 200 bp (40,000+ monomers for each chromosome, HU dimerizes). These pseudo-histones condense the chromosome into a body (called a nucleiod) about 17 microns in diameter. The prokaryotic ribosome is composed of 2 subunits, the 30S and the 50S subunits. The 20S subunit has 21 proteins bound to the 16S (1700 nt) rRNA. The 50S subunit has 34 proteins bound to the 23S (3700 nt) and 5s (120 nt) rRNA. The storage granules or inclusions include metachromatic granules (which contain polyphosphate), glycogen granules (which store polyglucose) and lipid inclusions (which contain poly-B-hydroxybutyrate or PHB). Bacteria do not have a nucleus or other complex organelles (such as mitochondria, endoplasmic reticulum or chloroplasts) as found in eukaryotic cells. This simple interior structure makes bacterial cells much simpler to model and much easier to understand than eukaryotic cells. (From http://redpoll.pharmacy.ualberta.ca/CCDB/intron_new.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli 536 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 362663 NC_008253.1 Bac0014511 Trichodesmium erythraeum IMS101 "Trichodesmium erythraeum occurs throughout the open waters of oligotrophic tropical and subtropical oceans and forms filaments (trichomes) of 20 to 200 cells that can further aggregate into colonies several millimeters across. Trichodesmium can form blooms in excess of 100,000 km2, which are most commonly composed of Trichodesmium erythraeum and Trichodesmium thiebautii. A marine diazotroph, it fixes nitrogen in non-granulated cells. It is also able to induce genes under phosphate stress that would allow it utilize organic phosphonate, an ability so far unknown in marine cyanobacteria. The colonies vary in color from yellowish-brown to deep red because they contain phycoerythrin as their primary light harvesting pigment. Trichodesmium spp. are planktonic and owe their buoyancy to the possession of gas vacuoles. Trichodesmium erythraeum (strain IMS101) produces a small intracellular cyclic peptide dubbed trichamide, which in its pure form is not neurotoxic in mice, however a crude preparation of the peptide is neurotoxic. (HAMAP: TRIEI)" Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Trichodesmium Trichodesmium erythraeum IMS101 Negative Filamentous Yes 1 2 Aerobic Mesophilic Aquatic Free living Filaments No 203124 NC_008312.1 Bac0014512 Synechococcus sp. CC9311 "Marine unicellular cyanobacteria of the synechococcus group occupy an important position at the base of the marine food chain. They are abundant in the world's oceans and as a result are one of the most numerous genomes on earth. They have the ability to acquire major nutrients and trace metals from the submicromolar concentrations found in the oligotrophic open seas and their light-harvesting apparatus is uniquely adapted to the spectral quality of light in the ocean.A third of the open ocean isolates of synechococcus possess a unique type of swimming motility not seen in any other type of microorganism, they propel themselves through seawater at speeds of up to 25 mm/sec despite their lack of external propelling devices. They do not use their motility to respond to light gradients, but instead to respond to extremely small gradients of nitrogenous compounds.Synechococcus sp. strain WH8102 is a motile strain that can be grown in both natural and artificial seawater liquid media as well as on plates and is amenable to biochemical and genetic manipulation. The availability of the complete sequence of the genome of synechococcus WH8102 will provide insights not only into the unique adaptations of this cyanobacterial group to the marine environment, including mechanisms of nutrient and metal transport, chemotaxis, motility, and viral interactions but also into what factors might be ultimately important in controlling primary productivity in the oceans.Marine synechococcus spp. coexist with the other abundant unicellular marine cyanobacterial group, prochlorococcus . A major difference between the synechococcus and prochlorococcus groups lies in their light-harvesting apparatus, with synechococcus utilizing chlorophyll A, and prochlorococcus relying on divinyl chlorophylls A and B. A comparative analysis of their genomes should allow insights not only into the evolution of light-harvesting complexes, but also into cyanobacterial diversification in the oceans, including adaptations to different marine niches.Marine unicellular cyanobacteria are responsible for an estimated 20-40% of chlorophyll biomass and carbon fixation in the oceans.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CC9311 Negative Cocci Yes 1 2 Facultative Photosynthetic- Photoautotroph Mesophilic Aquatic Free living Singles No 64471 NC_008319.1 Bac0014513 Shewanella frigidimarina NCIMB 400 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. . They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella frigidimarina strain NCIMB 400 is a marine bacterium isolated from the North Sea, off the coast of Aberdeen, UK, which exhibits a high degree of respiratory flexibility. Substrates that can be used as electron acceptors in include nitrate, nitrite, trimethylamine N-oxide, Fe(III) and Mn(IV). The organism is rich in c-type cytochromes, the synthesis of many of which appears to be increased during anaerobic growth with ferric irons present as respiratory electron acceptor. Biochemical studies of S. frigidimarina NCIMB 400 have revealed genes for two distinct soluble fumarate reductases and crystal structures of encoded proteins have been determined. This organism has also been a key target for the study of the biochemistry and genetic regulation of Fe(III) respiration. (HAMAP: SHEFN)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina NCBM4000 Negative Bacilli Yes 1 2 Facultative 20 Heterotroph Mesophilic Multiple Free living Pairs- Singles Nonsporulating No 318167 NC_008345.1 Bac0014514 Maricaulis maris MCS10 "Formerly known as Caulobacter maris, a marine member of the dimorphic prosthecate bacteria (DPB). DPB are alpha-proteobacteria that reproduce in an asymmetric manner rather than by binary fission and are of interest as simple models of development. M.maris are chemo-organotrophic aerobes, and probably contribute to carbon and other nutrient cycling. Strain MCS 10 was isolated from filtered seawater in Washington State, USA. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Maricaulis Maricaulis maris MCS10 Negative Bacilli No 1 2 Facultative 20 Mesophilic Aquatic Free living Singles Nonsporulating No 394221 NC_008347.1 Bac0014515 Rhizobium johnstonii 3841 "Rhizobium johnstonii 3841 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This microbe exhibits optimal growth at a temperature of 25.0°C, indicating a preference for moderate thermal conditions. ↵↵As a member of the Rhizobium genus, R. johnstonii 3841 is host-associated, suggesting a symbiotic relationship with specific plant hosts, particularly legumes. This association is significant as Rhizobium species are well-known for their ability to fix atmospheric nitrogen, a crucial process that enhances soil fertility and promotes plant growth. The bacterium's adaptation to a host-associated habitat underscores its potential role in sustainable agricultural practices, particularly in nitrogen-deficient soils.↵↵The rod shape and aerobic nature of R. johnstonii 3841 further contribute to its ecological niche, as these traits may facilitate efficient nutrient uptake and metabolic processes in well-aerated environments. The specific interactions between R. johnstonii 3841 and its host plants may lead to the development of specialized plant-microbe signaling pathways, which can ultimately influence plant health and productivity. Understanding these dynamics could provide insights into the enhancement of legume cultivation and broader agricultural sustainability." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium johnstonii Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Symbiotic Singles 216596 NC_008378.1 Bac0014516 Pseudomonas aeruginosa UCBPP-PA14 "Pseudomonas aeruginosa is an important soil bacterium, with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. In addition to being able to colonize a wide variety of environments, Pesudomonas aeruginosa is also a pathogen with a wide host range. PA14, a clinical isolate from a human burn patient, has been demonstrated to cause pathogenesis in such diverse hosts as humans, mice, Caenorhabditis elegans, Drosophila melanogaster, and Arabidopsis thaliana. PA14 is also an excellent model for the study of pathogenesis and biofilm formation. Comparison of PA14 with a less pathogenic previously sequenced P.aeruginosa strain (PAO1; PSEAE) showed that genes that are present in PA14 but absent in PAO1 do not correlate with the virulence of these strains. The authors suggest that virulence in P.aeruginoas is the result of the combination of pathogenicity-related genes that interact in different fashions depending on the genetic background (adapted from http://ausubellab.mgh.harvard.edu/cgi-bin/pa14/annotation/start.cgi). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa UCBPP-PA14 Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 208963 NC_008463.1 Bac0014517 Pediococcus pentosaceus ATCC 25745 "Pediococcus pentosaceus are Gram-positive, facultatively anaerobic, non-motile and non-spore-forming members of the industrially important lactic acid bacteria. Like other lactic acid bacteria, P. pentosaceus are acid tolerant, cannot synthesize porphyrins, and possess a strictly fermentative metabolism with lactic acid as the major metabolic end product. P. pentosaceus can be isolated from a variety of plant materials and bacterial ripened cheeses. This organism is used as an acid producing starter culture in sausage fermentations, cucumber and green bean fermentations, soya milk fermentations, and silage. P. pentosaceus are also a typical component of the adventitious or non-starter microflora of most cheese varieties during ripening. In addition, it has been suggested that this organism may have value as an acid-producing starter culture in the dairy fermentations. Pediococcus divide alternatively in 2 perpendicular planes to form tetrads (adapted from http://genome.jgi-psf.org/pedpe/pedpe.home.html). (EBI Integr8)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus ATCC 25745 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Tetrads Nonsporulating No 278197 NC_008525.1 Bac0014518 Arthrobacter sp. FB24 "Arthrobacter species are apparently ubiquitous soil bacteria that have been studied because of their vast metabolic activities and survival in extreme environments. They are aerobic, Gram-positive bacteria with a high GC content and use a range of carbon sources. They are most often recognized morphologically by their jointed-rod to coccus growth cycle. They are classified into the class Actinobacteria, order Actinomycetales, and family Micrococcaceae. Arthrobacter sp. (strain FB24) was isolated from chromate and xylene enriched soil microcosms used to ascertain changes in microbial community composition under these stresses. This organism shows an extreme chromium tolerance, is resistant to other metals and radiations and is able to degrade some hydrocarbons. Its genome is made up of one chromosome and 3 plasmids. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. FB24 FB24 Positive Bacilli Yes 1 1 Aerobic Mesophilic Soil Free living Nonsporulating No 290399 NC_008537.1 Bac0014519 Listeria welshimeri serovar 6b str. SLCC5334 "Listeria are Gram-positive, motile, facultative anaerobic bacteria; L.welshimeri (serovar 6b) is one of 4 nonpathogenic members of the genus. There are 2 pathogenic members, L.monocytogenes (also fully sequenced) and L.ivanovii. L.welshimeri was first isolated from decaying plants. Biochemical properties such as presence of catalase activity, absence of oxidase activity and acid production from fermentation of D-xylose or alpha-methyl-D-mannoside but not from L-rhamnose or D-mannitol are used to distinguish it from other Listeria. Comparisons between the 4 currently fully-sequenced genomes L.welshimeri, L.innocua (another non-pathogenic Listeria) and L.monocytogenes indicate that the non-pathogenic Listeria probably evolved from a virulent ancestor by loss of the virulence gene cluster region. Genes lost include those coding for virulence, general intracellular survival genes, surface-associated LPXTG- and LRR-containing proteins and proteins involved in survival at elevated temperatures. L.welshimeri has undergone further gene loss (233 genes compared to L.innocua and L.monocytogenes) and acquired other novel genes (311 genes compared to L.innocua and L.monocytogenes), probably as a result of horizontal gene transfer. Genes exclusively present in L.welshimeri include those for uptake and utilization systems for plant energy sources, indicating an adaptation to a plant saprophytic lifestyle. It contains a single putative prophage inserted in a region that in the related pathogen L.ivanovii has pathogenicity island. (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria welshimeri SLCC5334 Positive Bacilli No 1 1 Facultative Chemoorganotroph Mesophilic Multiple Free living Chains- Singles Nonsporulating No 386043 NC_008555.1 Bac0014520 Magnetococcus marinus MC-1 "Magnetococcus marinus MC-1 is a Gram-negative, spherical bacterium that exhibits microaerophilic growth, thriving optimally at a temperature of 25.0°C. This organism is notable for its ability to orient itself along magnetic fields, a characteristic that is facilitated by the presence of magnetosomes, specialized organelles that contain magnetic iron minerals. These traits suggest a specialized adaptation to aquatic environments where the orientation provided by magnetic fields may enhance its ecological niche, potentially aiding in navigation towards optimal light conditions for photosynthesis or nutrient availability.↵↵The Gram-negative nature of Magnetococcus marinus MC-1 indicates a complex cell envelope structure, which typically includes an outer membrane composed of lipopolysaccharides, contributing to its environmental resilience. Its spherical shape may confer advantages in nutrient uptake and motility in viscous aquatic environments. The microaerophilic oxygen requirement suggests that this bacterium thrives in conditions where oxygen levels are lower than atmospheric concentration, possibly indicative of its habitat in stratified water columns or sediments where oxygen gradients are prevalent. ↵↵Understanding the physiological traits of Magnetococcus marinus MC-1 not only sheds light on its survival strategies but also highlights the potential roles such microorganisms play in biogeochemical cycles within their habitats. This unique adaptation to specific environmental conditions may contribute to the overall microbial diversity and functioning of marine ecosystems, particularly in relation to magnetotaxis and nutrient cycling processes." Pseudomonadati Pseudomonadota Magnetococcia Magnetococcales Magnetococcaceae Magnetococcus Magnetococcus marinus Gram-negative sphere microaerophile 25 mesophilic 156889 NC_008576.1 Bac0014521 Mycolicibacterium smegmatis MC2 155 "Mycolicibacterium smegmatis MC2 155 is a Gram-positive, rod-shaped bacterium characterized by its single-cell arrangement and aerobic metabolism. This microbe is classified as a chemoorganotroph, utilizing organic compounds as its energy source, which reflects its adaptability to various nutrient-rich environments. M. smegmatis MC2 155 thrives optimally at a temperature of 37.0°C, indicating a potential preference for conditions resembling those found in warm-blooded hosts.↵↵As a member of the Mycolicibacterium genus, this strain is associated with host environments, which may suggest interactions with host microbiomes or implications in nutrient cycling within these habitats. While specific ecological roles and interactions remain to be fully elucidated, the ability of M. smegmatis to inhabit host-associated environments highlights its potential significance in studies related to microbial ecology and symbiosis. Understanding the metabolic capabilities and environmental adaptations of M. smegmatis MC2 155 could provide insights into its role within diverse ecosystems, particularly in relation to organic matter decomposition and nutrient availability in host-associated habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium smegmatis Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 246196 NC_008596.1 Bac0014522 Bifidobacterium adolescentis ATCC 15703 Bifidobacterium adolescentis represents 0.008% of the total number of microbial 16S rDNA sequences found in the gut. (EBI Integr8) Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis ATCC 15703 Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating No 367928 NC_008618.1 Bac0014523 Paracoccus denitrificans PD1222 "Paracoccus denitrificans is a Gram-negative, non-motile coccoid soil bacterium from the alpha subdivision of the proteobacteria. Formerly known as Micrococcus denitrificans, it was first isolated in 1910 by M. Beijerinck, and renamed in 1969 to Paracoccus denitrificans by Davis. P. denitrificans is a model organism for the study of denitrification. Besides its intrinsic interest, denitrification also represents a source of atmosphere damaging compounds (nitric oxide and nitrous oxide), is a route for the loss of nitrogen fertilizer from agricultural soil, and has potential applications in the water treatment industry. P. denitrificans is a popular model for investigators with interests in a variety of aspects of microbial physiology. The organism grows well under aerobic conditions, expressing a respiratory chain very similar to that of the eukaryotic mitochondrion. P. denitrificans has been, and continues to be, the subject of many studies of the fundamental biochemical and bioenergetic properties of the aerobic electron transport chain. The evidence from 16S rRNA analysis indicates that the evolutionary precursor of the mitochondrion was a close relative of P. denitrificans (both fall in the alpha sub-group of the proteobacteria), justifying the use of P. denitrificans as a model for the mitochondrial respiratory chain. P. denitrificans has also been extensively studied for its ability to grow on C1 compounds such as methanol and methylamine, what it does by oxidation to carbon dioxide, then assimilation via the Calvin cycle. The organism can also grow as a chemolithoautotroph, using inorganic energy sources with carbon dioxide as the carbon source. P. denitrificans is now being exploited as a model organism for the study of poorly characterized sulfur compound transformations, because of its ability to use hydrogen and sulfur compounds, such as thiosulfate. Metabolic flexibility in this organism is reflected in an underlying flexibility of regulatory networks, which are currently only partially understood. Paracoccus is a biochemically versatile Genus, with a wide range of diverse degradative capabilities and potential applications in bioremediation. Strains have been isolated that utilize thiocyanate as an energy source, for the possible bioremediation of thiocyanate-contaminated wastewater from coke-oven factories. Strains that degrade halobenzoates under anaerobic denitrifying conditions, and that degrade sulfonates under anaerobic growth conditions have been described. Several strains of P. denitrificans have been isolated that grow chemolithoautotrophically using carbon disulfide or carbonyl sulfide as energy sources, and strains have been isolated from activated sludge that are capable of degrading quaternary carbon compounds such as dimethylmalonate under denitrifying conditions. Another strain isolated from activated sludge degrades a variety of methylated amines under both aerobic and anaerobic conditions. Some strains are capable of 'aerobic denitrification', the complete dissimilation of nitrate to dinitrogen (or nitrous oxide) under aerobic growth conditions. P. denitrificans also has the very unusual ability to oxidize ammonia to nitrite during growth on organic energy sources ('heterotrophic nitrification'). Coupled to denitrification, heterotrophic nitrification allows for the complete transformation of ammonia to dinitrogen by a single organism. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus denitrificans PD1222 Negative Bacilli No 1 2 Aerobic 25 Mesophilic Multiple Free living Singles- Pairs- Clusters Nonsporulating No 318586 NC_008686.1 Bac0014524 Shewanella amazonensis SB2B "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Strain SB2BT was isolated from Amazonian shelf coastal muds, in intertidal sediments, off the Amapa coast of Brazil, and is a highly active reducer of iron and manganese oxides, thiosulfate and elemental sulfur. Cells are rod-shaped, 2-3 um in length and 0.4-0.7 um in diameter, Gram-negative, facultatively anaerobic, polarly flagellated. No endospores nor capsules are formed. Cells are able to grow at mesophilic temperatures, with optimal growth observed at 37 C. Denitrifies nitrate to nitrite and nitrite to N2. Exhibits cytochrome oxidase, catalase and gelatinase activity, and produces hydrogen sulfide from thiosulfate. Haemolyses sheep blood cells and does not grow at NaCl concentrations above 3%. Utilizes acetate, succinate, fumarate and citrate as sole carbon sources as well as a few carbohydrates and amino acids. Very active in the reduction of iron, manganese and sulfur compounds. (HAMAP: SHEAM)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Negative Bacilli Yes 1 2 Facultative 37 Heterotroph Mesophilic Multiple Free living Pairs- Singles Nonsporulating No 326297 NC_008700.1 Bac0014525 Pyrobaculum islandicum DSM 4184 "Pyrobaculum islandicum (strain DSM 4184 / JCM9189) is a hyperthermophilic archaeon isolated from water from a geothermal power plant in Iceland. This organism is able to grow at 95 degrees Celsius autotrophically, heterotrophically (lithotrophically and organotrophically), and mixotrophically using hydrogen or organic matter (acetate) as the electron donors and sulfur, sulfite, and thiosulfate as electron acceptors. (HAMAP: PYRIL)" Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum islandicum DSM 4184 Bacilli No 1 1 Anaerobic 100 Thermophilic Specialized Free living Nonsporulating No 384616 NC_008701.1 Bac0014526 Marinobacter nauticus VT8 "Marinobacter nauticus VT8 is a Gram-negative bacterium characterized by its marine origin and distinct physiological traits. As a member of the genus Marinobacter, this microbe is adapted to thrive in saline environments, which is reflective of its ecological niche in oceanic waters. The Gram-negative nature of Marinobacter nauticus VT8 suggests a complex cell envelope structure, including an outer membrane that may contribute to its survival in harsh marine conditions.↵↵This bacterium is noteworthy for its potential to metabolize a variety of organic compounds, which positions it as an interesting candidate for studies related to biodegradation and bioremediation in marine ecosystems. The presence of diverse metabolic pathways could allow Marinobacter nauticus VT8 to utilize various substrates, thereby playing a role in nutrient cycling within its habitat.↵↵Furthermore, the adaptability of Marinobacter nauticus VT8 to high-salinity environments may provide insights into the evolutionary mechanisms that facilitate microbial life in extreme conditions. Its ability to thrive in such niches underscores the importance of marine microbes in global biogeochemical processes and their potential applications in environmental biotechnology. Overall, Marinobacter nauticus VT8 exemplifies the rich diversity of microbial life in the ocean and highlights the necessity for further research into its ecological roles and functional capabilities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter nauticus negative 351348 NC_008739.1 Bac0014527 Nitratidesulfovibrio vulgaris DP4 "Nitratidesulfovibrio vulgaris DP4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives in a variety of habitats, demonstrating its adaptability to diverse environmental conditions. It is classified as an anaerobe, indicating that it does not require oxygen for growth and may even be inhibited by its presence. The optimal growth temperature for N. vulgaris DP4 is 25.0°C, suggesting a preference for moderate thermal conditions commonly found in many natural environments.↵↵The ability of N. vulgaris DP4 to occupy multiple habitats reflects its potential role in various biogeochemical cycles, particularly in environments where sulfate and nitrate are present. Its anaerobic nature may enable it to contribute to the reduction of these compounds, participating in processes such as denitrification or sulfate reduction. As such, N. vulgaris DP4 may play a significant role in nutrient cycling within anaerobic ecosystems, influencing the availability of nitrogen and sulfur compounds in these environments. This functional capability underscores the importance of N. vulgaris DP4 in maintaining ecological balance and supporting microbial diversity in anaerobic habitats." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris Negative Rod Yes 1 2 Anaerobe 25 Mesophilic Multiple Free living Singles 391774 NC_008741.1 Bac0014528 Acidovorax sp. JS42 "Acidovorax sp. is an aerobic mesophillic Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria. It is formerly known as Pseudomonas sp. JS42. This nitroaromatic compound-degrader organism was isolated from nitrobenzene-contaminated sediment and is capable of using 2-nitrotolulene as a sole carbon and energy source. 2-nitrotolulene, a nitroaromatic compound, is used in the manufacture of dyes, pigments and explosives. Nitroaromatic compounds, which contain an aromatic ring with one or more nitro groups attached, are a significant contaminant in industrial soils. Acidovorax sp. JS42 degrades 2-nitrotolulene by first removing the nitro moiety producing 3-methylcatechol. The enzyme involved in this process, 2-nitrotolulene dioxygenase, has been purified and characterized. The genome sequence of this organism will provide information about the gene content of a free-living species with a catabolic capacity relevant to bioremediation of nitroaromatic-contaminated soils. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. JS42 JS42 Negative Bacilli No 1 2 Aerobic Mesophilic Terrestrial Free living Nonsporulating No 232721 NC_008765.1 Bac0014529 Verminephrobacter eiseniae EF01-2 "This species was isolated from the common composting earthworm Eisenia foetida. Earthworm egg capsules contain high numbers of the bacterial endosymbiont, acquired by transfer from nephridia into the egg capsules. Juvenile earthworms are colonized during embryonic development within the egg capsule, and failing this are not likely to acquire the symbiont by association with colonized adults or their bedding. A function for these bacteria has not yet been ascribed. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Verminephrobacter Verminephrobacter eiseniae EF01-2 Negative rod 2 organotroph; chemotroph Mesophilic HostAssociated Symbiotic Eisenia foetida No 391735 NC_008771.1 Bac0014530 Bartonella bacilliformis KC583 "Bartonella bacilliformis is the causative agent of bartonellosis (also known as Carrion's disease), a biphasic disease endemic to Andean valleys in Peru, Columbia and Ecuador. It is transmitted by the sandfly Phlebotomus verrucarum which is limited to these areas. The bacterium was first isolated in 1909 by the Peruvian physician Albert Barton. Bartonellosis is usually characterized by two distinctive stages: a sudden (acute), potentially life-threatening illness associated with high fever and decreased levels of circulating red blood cells (i.e., hemolytic anemia) called Oroya fever. Mortality rates of up to 40-80% in untreated patients are reported. The second phase, which can take between 2 weeks to several years to manifest is characterized by a chronic, benign skin (cutaneous) eruption consisting of raised, reddish-purple nodules on the head and extremities (called Verruga peruana). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella bacilliformis KC583 Negative Bacilli No 1 2 Aerobic 28 Mesophilic HostAssociated Symbiotic Homo sapiens Nonsporulating Yes 360095 NC_008783.1 Bac0014531 Yersinia enterocolitica subsp. enterocolitica 8081 "Yersinia enterocolitica is a mammalian gastrointestinal pathogen composed of six biotypes. The biotypes group into three types of pathogen; mouse nonpathogens (biotype 1A), weak mouse pathogens (biotypes 2-5) and a mouse-lethal group (biotype 1B), of which this strain is a member. Biotype 1B is a primarily New World strain. Y.enterocolitica and Y.pseudotuberculosis are thought to have diverged in the last 200 million years, while it has been proposed that Y.pestis (the causative agent of plague) evolved from Y.pseudotuberculosis 1,500-20,000 years ago. Y.pseudotuberculosis and Y.pestis cause more severe clinical symptoms than Y.enterocolitica. The availability of representatives of all three Yersinia species has allowed comparison of gene loss and acquisitions since they diverged. It seems that despite both being enteric pathogens, Y.enterocolitica and Y.pseudotuberculosis occupy different niches as seen by differential losses of presumably adaptive functions such as cellulose biosynthetic genes (present only in Y. enterocolitica) and osmoregulated periplasmic glucan biosynthetic pathway (probably not succinylated in Y.pseudotuberculosis). Like all Yersinia, Y.enterocolitica has an approximately 70 kb virulence plasmid. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia enterocolitica 8081 Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 393305 NC_008791.1 Bac0014532 Prochlorococcus marinus str. MIT 9515 "Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)" Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus MIT9515 Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living No 167542 NC_008817.1 Bac0014533 Methylibium petroleiphilum PM1 "Methylibium petroleiphilum strain PM1 (ATCC BAA-1232) is a motile phototrophic methylotrophic Gram-negative bacterium phylogenetically associated with the beta subdivision of the Proteobacteria and representing a new species within the Rubrivivax group (Comamonadaceae family). It is found in many gasoline-contaminated aquifers (freshwater, sewage, and activated sludge) and can grow in the dark under aerobic conditions or photosynthetically under anaerobic conditions. PM1 can also grow on carbon dioxide or on hydrogen. It was isolated by Dr. Scow in 1998 from a sewage treatment plant biofilter that was used for treating discharge from oil refineries in Los Angeles, California. Methylibium petroleiphilum is a model organism for the study of photosynthetic processes due to its genetic tractability. Strain PM1 is capable of degrading the gasoline additive methyl tert-butyl ether (MTBE) and its daughter product tert-butyl alcohol (TBA). Strain PM1 also degrades aromatic hydrocarbons (benzene, toluene, and xylene) and n-alkanes (C5 to C12) present in petroleum products. It is capable of aerobic growth on methanol, formate and succinate, but not on methylamine. Whole-genome analysis of PM1 revealed a 4-Mb circular chromosome and a 600-kb megaplasmid. Hydrocarbon (aromatic and alkane) degradation, metal resistance (arsenic, chromate, copper, cobalt, nickel, molybdenum, iron), and methylotrophy are encoded on the chromosome. The megaplasmid contains an unusual t-RNA island, numerous insertion sequences, and large repeated elements (including tandem repeat encoding phosphonate transport and cobalamin biosynthesis). It was suggested that the plasmid was recently acquired and apparently carries the genetic information responsible for PM1 ability to degrade MTBE and alkanes. The genetic basis for MTBE and TBA conversion is not known, although different classes of monooxygenases have been proposed to play a role in metabolism or cometabolism of these compounds including P-450 monooxygenase and alkane monooxygenase (hydroxylase) systems. It is noteworthy that MTBE degrading strains (PM1, MG4 and 312), from diverse locations possess nearly identical megaplasmids. PM1 can serve as a model for other MTBE-degrading methylotrophs such that the knowledge gained from analysis of its genome, transcriptome, and proteome can be applied to PM1-like bacteria. An understanding of the MTBE degradation pathway and its regulation will allow for optimization of MTBE bioremediation and the ability to monitor this unique process in situ using molecular tools. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Methylibium Methylibium petroleiphilum PM1 Negative Bacilli Yes 1 2 Facultative 30 Phototroph- Methylotroph Mesophilic Aquatic Free living Singles No 420662 NC_008825.1 Bac0014534 Lactococcus cremoris subsp. cremoris MG1363 "Lactococcus cremoris subsp. cremoris MG1363 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 40.0°C. This strain is categorized as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may facilitate its survival in various environments. ↵↵L. cremoris subsp. cremoris MG1363 is part of a broader group of lactic acid bacteria commonly found in diverse habitats, including dairy products where it plays a significant role in fermentation processes. Its nonsporulating nature suggests that it relies on vegetative growth rather than spore formation for reproduction and resilience in fluctuating environmental conditions. ↵↵The ability of this strain to adapt to both aerobic and anaerobic conditions may contribute to its ecological versatility, allowing it to occupy niches in various substrates, particularly those rich in carbohydrates. This adaptability could enhance its effectiveness in biotechnological applications, such as cheese production, where temperature and oxygen levels can vary. Overall, L. cremoris subsp. cremoris MG1363 exemplifies the intricate balance of metabolic flexibility and environmental adaptability characteristic of many lactic acid bacteria." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 416870 NC_009004.1 Bac0014535 Streptococcus sanguinis SK36 "Streptococcus sanguinis, a member of the human indigenous oral microflora, has long been recognized as a key player in the bacterial colonization of the mouth. S. sanguinis directly binds to oral surfaces and serves as a tether for the attachment of a variety of other oral microorganisms which colonize the tooth surface, form dental plaque, and contribute to the etiology of both caries and periodontal disease. Furthermore, S. sanguinis has been long recognized as a leading cause of bacterial endocarditis, a disease of high morbidity which is fatal if untreated. Additionally, S. sanguinis and other viridans streptococci of the mouth are emerging as important bloodstream pathogens in infections which threaten neutropenic patients (patients with decreased numbers of neutrophils in their blood). The reasons underlying this previously unrecognized virulence now elicited by the viridans streptococci are unknown. Such infections are being compounded by the increasing frequency with which penicillin resistance is being observed in this group of organisms. Some of the more central features of S. sanguinis include production of glucans from sucrose, platelet binding, binding to extracellular matrix proteins (e.g., laminin, fibronectin), binding to salivary proteins, ability to specifically co-aggregate with other oral microflora, and genetic competence (adapted from http://www.sanguinis.mic.vcu.edu/background.htm). (EBI Integr8)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis SK36 Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 388919 NC_009009.1 Bac0014536 Staphylothermus marinus F1 "Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) is a strictly anaerobic, hyperthermophilic archaeon phylogenetically associated with the kingdom Crenarchaeota. This organism was isolated from hydrothermal marine sediment from Vulcano Island in Italy. Staphylothermus marinus is heterotrophic and requires sulfur, which is reduced to H2S, for growth. It is slightly irregular coccus, which exhibits optimal growth at 92 degrees Celsius. (HAMAP: STAMF)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Staphylothermus Staphylothermus marinus F1 Cocci No 1 1 Anaerobic 92 Heterotroph Hyperthermophilic Specialized Free living Nonsporulating No 399550 NC_009033.1 Bac0014537 Herminiimonas arsenicoxydans "Herminiimonas arsenicoxydans strain ULPAs1 (formerly called Caenibacter arsenoxydans ULPAs1, or Cenibacterium arsenoxydans) is an heterotrophic bacterium isolated from the activated sludge of an industrial water treatment plant contaminated with heavy metals such as arsenic, lead, copper, and silver. H. arsenicoxydans is the first fully characterized arsenic-metabolizing microorganism. It is phylogenetically associated with the beta subdivision of the Proteobacteria and belongs to the new genus Herminiimonas comprising bacteria isolated from diverse aquatic environments and anthropized ecosystems. H. arsenicoxydans possesses unsuspected mechanisms for coping with arsenic. Aside from multiple biochemical processes such as arsenic oxidation/reduction, oxidative stress resistance and As[III] extrusion (efflux), H. arsenicoxydans also exhibits positive chemotaxis and motility towards arsenic and metalloid scavenging by exopolysaccharides. These observations demonstrate the existence of a novel strategy to efficiently colonize arsenic-rich environments, which extends beyond oxidoreduction reactions. Genomic and experimental data demonstrated that this organism is capable of accommodating the presence of high concentrations of various toxic metals such as cadmium and zinc. However, except for arsenic, the resistance levels to toxic metals were much lower than those measured in the metallophilic R. metallidurans, which contains multiple plasmid-encoded genes, suggesting a specific physiological adaptation of H. arsenicoxydans toward arsenic. Three clusters of genes involved in resistance to arsenic were identified. Quantitative analysis of the transporter-encoding gene mRNA demonstrated that the resistance operons are either constitutively expressed or induced in the presence of As[III] in H. arsenicoxydans. H. arsenicoxydans can accommodate a wide range of oxygen. Indeed, the H. arsenicoxydans genome harbors multiple respiratory pathways, permitting microorganisms to grow under aerobic, microaerobic, and anoxic conditions. Remarkably, the versatile regulatory system of H. arsenicoxydans enables it to sense dynamic changes in arsenic concentration and to initiate motility and EPS synthesis for attachment to this metalloid. Recent results suggest that microbial biofilms are involved in the adsorption and immobilization of metals (such as Pb[II] and Cr[III]). The ability of H. arsenicoxydans to scavenge arsenic in an EPS matrix may be of prime importance in the context of bioremediation of contaminated environments, leading to the sequestration of this toxic metalloid. (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herminiimonas Herminiimonas arsenicoxydans Negative Bacilli Yes 1 2 Anaerobic 25 Heterotroph Mesophilic Aquatic Free living non-spore-forming No 204773 NC_009138.1 Bac0014538 Burkholderia vietnamiensis G4 "The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility. B. vietnamiensis is known for its rhizosphere colonizing ability on rice, and its ability to fix N2 (PubMed 11375196). It is also the third most frequent Bcc species isolated from CF patients. B. vietnamiensis strain G4 (formerly B.cepacia strain R1808) is the best trichloroethene (TCE) co-oxidizing strain yet discovered, having been isolated from an industrial waste treatment facility at Pensacola Naval Air Station, Florida, U.S.A. TCE and its sister chloroethenes are the most widespread hazardous environmental contaminants in groundwaters. It has been used at a number of polluted sites to aid clean-up of ground water. Besides its pollutant degrading ability, this strain was sequenced because well-characterized members of this species come from the CF lung, rice rhizosphere and soil, and hence offer the prospect for differentiating traits important to each habitat (adapted from http://genome.jgi-psf.org/bur08/bur08.home.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis G4 Negative Rod Yes 2 Facultative aerobe Mesophilic Multiple Free living No 269482 NC_009226.1 Bac0014539 Desulforamulus reducens MI-1 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulforamulus Desulforamulus reducens 349161 NC_009253.1 Bac0014540 Corynebacterium glutamicum R "Coryneform bacteria are rod-shaped, fast growing, non-sporulating Gram-positive bacteria that enjoy widespread distribution. One of the non-pathogenic species of coryneform bacteria, Corynebacterium glutamicum, was discovered in the 1950s in Japan as natural producer of glutamic acid. It is now produced by direct fermentation used for industrial production of amino acids which are used as flavour enhancers in food.Corynebacterium glutamicum is of high industrial interest as a research object because it is used by the chemical industry for the biotechnological production of the amino acid lysine. The substance is employed as a source of protein in animal nutrition. Lysine is one of the essential amino acids in animal nutrition. Biotechnologically produced lysine is added to feed concentrates as a source of protein, and is an alternative to soybeans or meat and bonemeal. In 2000, more than 450,000 metric tons of lysine were sold worldwide, representing a value of about 660 million Euros. (From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum R Positive Bacilli No 1 1 Facultative 30 Chemoorganotroph Mesophilic Multiple Free living Singles- V-shaped forms Nonsporulating No 340322 NC_009342.1 Bac0014541 Pyrobaculum arsenaticum DSM 13514 "Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) is a strictly anaerobic, hyperthermophilic, facultative organotrophic archaeon phylogenetically associated with the kingdom Crenarchaeota. This strain was isolated from a hot spring at Pisciarelli Solfatara, Naples, Italy. The rod-shaped cells grew chemolithoautotrophically with carbon dioxide as carbon source, hydrogen as electron donor and arsenate, thiosulfate or elemental sulfur as electron acceptor. H2S was formed from sulfur or thiosulfate, arsenite from arsenate. Organotrophically, the new isolate grew optimally in the presence of an inorganic electron acceptor like sulfur, selenate or arsenate. Cultures, grown on arsenate and thiosulfate or arsenate and L-cysteine, precipitated realgar (As2S2). During growth on selenate, elemental selenium was produced. (HAMAP: PYRAR)" Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum arsenaticum DSM 13514 Bacilli No 1 1 Anaerobic Organotroph- Chemolithotroph- Autotroph Hyperthermophilic Aquatic Free living Nonsporulating No 340102 NC_009376.1 Bac0014542 Polynucleobacter asymbioticus QLW-P1DMWA-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter asymbioticus 312153 NC_009379.1 Bac0014543 Stutzerimonas stutzeri A1501 "Stutzerimonas stutzeri A1501 is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds and is classified as an aerobe, requiring oxygen for growth and metabolic processes. This species is notably host-associated, suggesting a potential symbiotic relationship with its host or residing in specific niches within the host organism.↵↵The rod shape of S. stutzeri A1501 is characteristic of many bacteria, which may contribute to its adaptability in various environments, particularly within host-associated habitats. The organism’s Gram-negative nature indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that may influence its interactions with the host's immune system and its overall ecological role.↵↵Given its aerobic metabolism and heterotrophic lifestyle, S. stutzeri A1501 may play a significant role in the degradation of organic matter within its host environment, potentially influencing the host's nutrient cycling and overall health. The specific interactions and functions of this bacterium in its ecological niche remain to be fully elucidated but highlight the importance of host-associated microbes in maintaining ecological balance and supporting host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 379731 NC_009434.1 Bac0014544 Metallosphaera sedula DSM 5348 Metallosphaera sedula (strain ATCC 51363 / DSM 5348) is a thermophilic aerobic archaeon phylogenetically associated with the kingdom Crenarchaeota. Metallosphaera sedula (strain ATCC 51363 / DSM 5348) was isolated from a thermal pond in the Pisciarelli Solfatara in Italy. This organism is able to leach metals from sulfidic ores making it a potential bioleaching agent. The rate of oxidation of iron pyrite for this organism is increased under conditions of thermal and chemical stress. The genome sequence will provide information on the production and regulation of enzymes involved in the biooxidation of metals. (HAMAP: METS5) Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula DSM 5348 Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles Nonsporulating No 399549 NC_009440.1 Bac0014545 Dichelobacter nodosus VCS1703A "Dichelobacter nodosus (strain VCS1703A) is an aerotolerant anaerobe that is the principal causative agent of footrot in ruminants, a disease that leads to severe economic losses in the wool and meat industries. This Gram-negative bacterium is phylogenetically associated with the gamma subdivision of the Proteobacteria. The small size of the D. nodosus genome makes it the smallest anaerobic bacterium sequenced to date and places it among the smallest non-intracellular bacterial pathogens yet characterized. It differs markedly from small genomes of intracellular bacteria, retaining greater biosynthetic capabilities and lacking any evidence of extensive ongoing genome reduction (only six pseudogenes have been identified in D. nodosus). Almost 20% of the genome is derived from lateral gene transfer. Most of these regions seem to be associated with virulence. Though compact, its genome shows intergenic spacing that, in average, is closer to the median observed in prokaryotic genomes. D. nodosus lacks various metabolic pathways related to amino acid biosynthesis and is capable only of weak short-term, but not sustained, growth under microaerophilic conditions. The analysis of its metabolic pathways showed unsuspected capabilities, including carbohydrate utilization, electron transfer and several aerobic pathways. Once aerotolerant Dichelobacter nodosus infects the host, which it does through the production of a number of fimbrial adhesins, it secretes both extracellular proteases and toxins resulting in damage to the soft tissue underneath the horn of the hoof. Infection with D. nodosus requires climatic conditions of warm weather and moist pastures. D. nodosus can undergo serogroup conversion, and reservoirs of serogroups are found in infected hooves. This limits the value of available vaccines. The analysis of its genome revealed several immunogenic proteins that are candidate antigens for a cross-protective vaccine. Strain VCS1703A is virulent and naturally transformable. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Dichelobacter Dichelobacter nodosus VCS1703A Negative Bacilli No 1 2 Anaerobic 37 Mesophilic HostAssociated Free living Singles No 246195 NC_009446.1 Bac0014546 Pelotomaculum thermopropionicum SI "Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) is a non-halophilic thermophilic anaerobic bacterium phylogenetically associated with the Firmicutes. Pelotomaculum thermopropionicum was isolated from granular sludge from a thermophilic upflow anaerobic sludge blanket (UASB) reactor. It was isolated both in pure culture and in co-culture with methanogens. Pelotomaculum thermopropionicum oxidizes volatile fatty acids and alcohols in syntrophic association with methanogenic archaea. It can utilize propionate, ethanol, lactate, ethylene glycol, 1-butanol, 1-propanol, 1-pentanol and 1,3-propanediol. In pure culture, Pelotomaculum thermopropionicum can ferment pyruvate and fumarate. Fumarate can also be used as an electron acceptor in the presence of propionate, ethanol or lactate as an electron donor. This is the first mesophilic, syntropic propionate-oxidizing species known which is not a member of the delta-proteobacteria. (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Pelotomaculum Pelotomaculum thermopropionicum SI Positive Yes 1 1 Anaerobic 55 Thermophilic Specialized Sporulating No 370438 NC_009454.1 Bac0014547 Vibrio cholerae O395 "Vibrios are facultatively anaerobic bacteria that are metabolically similar to the Enterobacteriaceae. They are ubiquitous to oceans, coastal waters, and estuaries. The best known species is Vibrio cholerae, which can cause severe diarrheal illness in humans.The genus Vibrio consists of Gram-negative straight or curved rods, motile by means of a single polar flagellum. Vibrios are capable of both respiratory and fermentative metabolism.Classic cholera is characterised by an abrupt onset of vomiting and profuse watery diaorrhea. Fluid losses can be significant (up to 20 L/day) and hypovolemic shock and metabolic acidosis can cause death within a few hours of onset, especially in children. Mortality, in untreated cases, is as high as 60%. In the past 180 years, 7 pandemics were reported, usually of Bengali origin, with the latest pandemic originating in Indonesia in 1961 and moving to the Western hemisphere. In 1991, a cholera outbreak in Peru and 20 other countries in the Western hemisphere accounted for over 600,000 cases with 5000 deaths.The complete genome of Vibrio cholerae consists of two circular chromosomes. The majority of recognisable genes for essential cell functions (e.g., DNA replication, transcription, translation, etc.) and pathogenicity (e.g., toxin, surface antigens, and adhesion) are located on the large chromosome. The small chromosome contains a large percentage of hypothetical genes, more genes that appear to have origins other than the Proteobacteria and a gene capture system (integron island) that suggests this may have been a megaplasmid captured by an ancestral Vibrio species.The Vibrio cholerae genome sequences provide a starting point for understanding how a free living, environmental microorganism is also a human pathogen.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae O395 Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 345073 NC_009457.1 Bac0014548 Candidatus Vesicomyosocius okutanii Pseudomonadati Pseudomonadota Gammaproteobacteria Candidatus Pseudothioglobaceae Candidatus Vesicomyidisocius Candidatus Vesicomyidisocius calyptogenae 412965 NC_009465.1 Bac0014549 Synechococcus WH7803 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. WH 7803 32051 NC_009481.1 Bac0014550 Synechococcus sp. RCC307 genomic sequence. Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. RCC307 316278 NC_009482.1 Bac0014551 Mycoplasmopsis agalactiae PG2 "Mycoplasmopsis agalactiae PG2 is a Gram-negative, coccoid bacterium characterized by its occurrence as individual cells, rather than in clusters or chains. This microbe is host-associated, indicating a close relationship with its host organism, which may influence its ecological niche and metabolic activities. Mycoplasmopsis agalactiae PG2 exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, potentially adapting to varying conditions within its host.↵↵The precise ecological roles and interactions of Mycoplasmopsis agalactiae PG2 within its host habitat remain to be fully elucidated. However, its capacity for facultative anaerobiosis suggests that it may play a versatile role in the host's microbiome, possibly contributing to the metabolic processes or influencing the microbial community structure. Understanding the specific interactions of this microbe within its ecological context could provide insights into its function and significance in host health and disease dynamics." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis agalactiae Negative Cocci No 1 1 Facultative Psychrophilic HostAssociated Free living Singles 347257 NC_009497.1 Bac0014552 Brucella ovis ATCC 25840 "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucella ovis is responsible for the disease known as Contagious Epididymitis in rams. It causes an infection of the genital tract that may cause lesions which affects the quality of the semen and the fertility of the infected ram. The organism can enter the body through any mucous membrane. Brucella ovis can be eradicated by a test and cull procedure. The disease has never been recorded in the United Kingdom (March 2007), but has been reported from Australia, New Zealand, the United States of America, South Africa and parts of Europe. Prevalence is thought to be high in the Southern European states. Infected flocks may suffer considerable economic loss because of poor fertility. There are no records of human infection (adapted from http://www.defra.gov.uk/animalh/diseases/notifiable/epididymitis/index.htm). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella ovis ATCC25840 Negative Rod No 1 2 Facultative aerobe 37 Mesophilic HostAssociated Free living Sheep Chains - Pairs - Singles Nonsporulating No 444178 NC_009505.1 Bac0014553 Fusobacterium polymorphum ATCC 10953 "Fusobacterium polymorphum ATCC 10953 is a Gram-negative, non-sporulating rod-shaped bacterium that typically arranges itself in pairs. This microbe thrives in anaerobic environments, making it well-suited for life in the host gut, where it engages in chemoheterotrophic metabolism, deriving energy from organic compounds. The optimal growth temperature for F. polymorphum is 37.0°C, which aligns with the physiological conditions of its common habitat within the gastrointestinal tract.↵↵As an inhabitant of the gut, F. polymorphum may play a role in the complex microbial ecosystem, contributing to the breakdown of dietary substrates and influencing host metabolism. Its anaerobic nature suggests that it may interact with other gut microorganisms, potentially participating in synergistic or competitive relationships. Understanding the functional role of F. polymorphum within the gut microbiota could provide insights into its contributions to digestion and overall gut health, highlighting the importance of such microbes in maintaining the delicate balance of the intestinal microbiome." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 393480 NC_009506.1 Bac0014554 Limosilactobacillus reuteri subsp. reuteri "Limosilactobacillus reuteri subsp. reuteri is a Gram-positive, rod-shaped bacterium that typically occurs in chains. This microbe is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. L. reuteri subsp. reuteri has been isolated from various habitats, suggesting its adaptability and potential for diverse ecological roles.↵↵The ability to thrive in multiple environments may contribute to its significance in various fermentation processes and its potential applications in the food industry, particularly in the production of probiotic products. The facultative anaerobic nature of L. reuteri subsp. reuteri also implies that it can survive in the gastrointestinal tracts of animals and humans, where it may play a role in gut health.↵↵Understanding the ecological flexibility of L. reuteri subsp. reuteri can provide insights into its interactions within microbial communities and its potential benefits in maintaining gut microbiota balance. Its presence in diverse habitats hints at its role as a versatile organism that may influence nutrient cycling and microbial dynamics across different ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 557436 NC_009513.1 Bac0014555 Roseiflexus sp. RS-1 "Roseiflexus is a filamentous anoxygenic phototroph, one of the green filamentous bacteria. This lineage is placed on the deepest branch of all photosynthetic bacteria. RS-1 was isolated from a microbial mat in Octopus Spring, in Yellowstone National Park, U.S.A. It does not have chlorosomes, which are a type of light-harvesting structure. Comparative genomics indicates that it appears to have the genetic capacity for CO2 reduction via the 3-hydroxypropionate pathway (adapted in part from PubMed 17635550). (EBI Integr8)" Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1 RS-1 Negative Bacilli No Facultative Photosynthetic- Photoautotroph Thermophilic Specialized Free living Filaments Nonsporulating No 357808 NC_009523.1 Bac0014556 Haemophilus influenzae PittGG "Haemophilus influenzae is a non-motile, Gram-negative bacterium that is an obligate resident of the human respiratory mucosa. Numerous studies have suggested that H. influenzae, present in the nasopharynx of the majority of children and adults, is a common cause of superinfection following upper respiratory viral infections. The presence of a polysaccharide capsule by some strains has provided for the division of the species into typeable (serotypes a-f) and nontypeable (NTHi) isolates. The majority of clinical isolates are NTHi, and they are associated with a spectrum of acute and chronic respiratory mucosal infections as well as a range of systemic disease states, suggesting a wide range of virulence phenotypes. Genomic studies have demonstrated that each clinical strain contains a unique genic distribution from a population-based supragenome, the distributed genome hypothesis. The distributed genome hypothesis posits that chronic bacterial pathogens utilize polyclonal infection and reassortment of genic characters to ensure persistence in the face of adaptive host defenses. Studies based on random sequencing of multiple strain libraries suggested that free-living bacterial species possess a supragenome that is much larger than the genome of any single bacterium; a typical pair of genomes varies by nearly 400 genes. Both PittEE and PitEE were derived from pediatric middle-ear specimens, with PittGG, a consistently virulent strain in animal models isolated from a child with a perforated tympanic membrane, whereas PittEE was obtained from a child undergoing tympanostomy and tube placement for chronic otitis media with effusion, a less virulent disease (adapted from PubMedID 17570853 and 17550610). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae PittGG Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living Homo sapiens Yes 374931 NC_009567.1 Bac0014557 Phocaeicola vulgatus ATCC 8482 "Phocaeicola vulgatus ATCC 8482 is a Gram-positive, rod-shaped bacterium that primarily exists in a single-cell arrangement. This microbe is classified as an anaerobe, meaning it thrives in environments devoid of oxygen. It is host-associated, indicating a relationship with a host organism, where it likely contributes to the host's microbiome.↵↵As a member of the gut microbiota, P. vulgatus ATCC 8482 plays a role in the fermentation of complex carbohydrates, thereby aiding in digestion and nutrient absorption. The anaerobic nature of this bacterium suggests it may engage in metabolic processes that produce short-chain fatty acids, which are essential for maintaining gut health and providing energy to colonocytes. ↵↵The ability of P. vulgatus to persist in anaerobic environments signifies its adaptation to the gastrointestinal tract, where oxygen levels are low. This adaptation highlights the importance of anaerobic microorganisms in the overall function of the gut ecosystem, which is essential for host health. Further studies on P. vulgatus may elucidate its specific contributions to host metabolism and its interactions within the gut microbiome, offering insights into the complex dynamics of host-microbe relationships." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 435590 NC_009614.1 Bac0014558 Parabacteroides distasonis ATCC 8503 "Parabacteroides distasonis (also known as Bacteroides distasonis) is a member of the normal distal human gut microbiota. The distal gut microbiota contain more bacterial cells than all of our body's other microbial communities combined. More than 90% of phylogenetic types belong to two divisions, the Bacteroidetes and the Firmicutes, with the remaining types distributed among eight other divisions. P. distasonis has the smallest genome among the sequenced human gut-associated Bacteroidetes, the smallest repertoire of genes involved in environmental sensing and gene regulation and the smallest number of genes associated with carbon source degradation. It lacks many accessory hemicellulases, pectinases and polysaccharidases that target non-plant carbohydrates. (EBI Integr8)" Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis ATCC 8503 Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Homo sapiens Nonsporulating No 435591 NC_009615.1 Bac0014559 Clostridium beijerinckii NCIMB 8052 "Clostridium beijerinckii species are ubiquitous in nature and routinely isolated from soil samples. C. beijerinckii NCIMB 8052 is a saccharolytic, strictly anaerobic, mesophyllic, motile, rod-shaped bacteria with oval, sub-terminal spores. It exhibits peritrichous flagella. During fermentation, it produces a number of products including acetate, butyrate, lactate, hydrogen gas, carbon dioxide, acetone, butanol, ethanol, acetoin and acetyl methyl carbonil. It is this capacity for solvent production (especially butanol, acetone, and isopropanol) that makes it biotechnologically interesting. It grows well and is easy to handle in simple, inexpensive media that is realistic for industrial use. The morphology of the cell changes over the growth cycle of the organism; at early exponential phase, the cells are long, filamentous and very motile. As the culture approaches the solventogenic stage, which corresponds with the stationary phase, cells shorten, become plumper and exhibit a lower level of motility (modified from http://genome.jgi-psf.org/finished_microbes/clobe/clobe.home.html). (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium beijerinckii NCIMB 8052 Positive Rod Yes 1 1 Anaerobe Chemoorganotroph Mesophilic Fresh water - Soil Free living Pairs - Singles Sporulating No 290402 NC_009617.1 Bac0014560 Methanococcus vannielii SB "Methanococcus vannielii SB (strain SB / ATCC 35089 / DSM 1224) is an archaeon of the phylum Euryarchaeota. This type species of Methanococcus was isolated from a San Francisco Bay mud flat. Unlike other members of the genus which tend to be thermophilic, this species grows only between 20 and 40 degrees Celsius. (HAMAP: METVS)" Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus vannielii SB Negative Cocci No 1 1 Anaerobic 30 Lithotroph Mesophilic Aquatic Free living Singles Nonsporulating No 406327 NC_009634.1 Bac0014561 Janthinobacterium sp. Marseille Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) was isolated in haemodialysis water despite microbiological control by filtration and chemicals. Its very small size allows it to pass through filters. (HAMAP: JANMA) Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. Marseille Marseille Negative Bacilli Yes 1 2 Mesophilic Aquatic Free living No 375286 NC_009659.1 Bac0014562 Sulfurovum sp. NBC37-1 "Sulfurovum sp. (strain NBC37-1) is a deep-sea vent microaerobic bacterium phylogenetically associated with the epsilon proteobacteria. This strain was isolated in the vicinity of a deep-sea vent occurring in the Iheya North hydrothermal field, in Okinawa, Japan. This rod-shaped bacterium grows chemolithoautotrophically and can utilize a wide spectrum of electron donors and acceptors (i.e. hydrogen, sulfur compounds, nitrate and oxygen). It can occupy different ecological niches, and its metabolic versatility probably enables it to adapt to the geochemical variability in deep-sea hydrothermal environments. Furthermore, fitting to its metal-rich niche, this strain contains a wide array of mineral transport systems including detoxification mechanisms of heavy metals such as arsenate, cadmium, and copper. It probably has some symbiotic relationship with vent animals. Sulfurovum sp. (strain NBC37-1) genome lacks orthologs of virulence genes of pathogenic epsilon proteobacteria, such as type IV secretion pathway and cag pathogenicity island genes. However, it possesses many virulence genes that were identified in pathogenic epsilon proteobacteria, including genes for virulence factor mviN, hemolysin, invasion antigen ciaB, and lytic murein transglycosylase. Some of the most remarkable virulence genes in deep-sea vent epsilon proteobacteria belong to the N-linked glycosylation (NLG) gene cluster. It is increasingly recognized that pathogenic epsilon proteobacteria have virulence determinants that are not classified as virulence genes in general but do play important roles in virulence. For example, Helicobacter species have a H2-uptake hydrogenase encoded outside the pathogenicity island, which is essential for its efficient initial colonization. Interestingly, strain NBC37-1 has four different hydrogenases (two of H2-uptake type, one H2-sensing type, and one H2-evolving type). (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. NBC37-1 NBC37-1 Negative Bacilli No 1 2 Facultative Chemolithoautotroph Mesophilic Specialized Free living No 387093 NC_009663.1 Bac0014563 Campylobacter jejuni subsp. doylei 269.97 "Gram-negative, microaerophilic, flagellate, spiral bacterium, Campylobacter species are the leading cause of food-borne gastroenteritis in developed countries. Infection with C. jejuni is the most frequent antecedent to a form of neuromuscular paralysis known as Guillain-Barre syndrome. C.jejuni can be carried by healthy cattle and birds. A high percentage of sold chickens are contaminated. (HAMAP: CAMJE)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni subsp. doylei 269.97 Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Homo sapiens Chains - Singles Nonsporulating Yes 360109 NC_009707.1 Bac0014564 Xanthobacter autotrophicus Py2 "A propene oxidizer able to degrade trichloroethylene when it is grown on propene because of the presence of propene monooxygenase. Xanthobacter autotrophicus Py2, an aerobic bacterium, was isolated following enrichment on propene and 1-butene. It is able degrade trichloroethylene when grown on propene due to the presence of a propene monooxygenase. It also degrades alkenes, epoxides and ketones. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Xanthobacter Xanthobacter versatilis Py2 Negative Bacilli Yes 2 Facultative Methylotroph Mesophilic Multiple Free living No 78245 NC_009717.1 Bac0014565 Parvibaculum lavamentivorans DS-1 "Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) is an aerobic, non-motile, Gram-negative, short rod. It is motile when growing with acetate, octane or in complex medium. It is able to metabolize a wide range of anionic and non-ionic surfactants and utilizes all representatives of the two major classes of surfactants used in laundry products in Germany, anionics and non-ionics. The epithet ""lavamentivorans"" stands for ""consuming (chemicals) used for washing"". (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Parvibaculaceae Parvibaculum Parvibaculum lavamentivorans DS-1 Negative Bacilli Yes 1 2 Aerobic Heterotroph Mesophilic Multiple Free living No 402881 NC_009719.1 Bac0014566 Shewanella sediminis HAW-EB3 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.Shewanella sediminis HAW-EB3 was isolated from sediment taken at a depth of 215 meters from an unexploded-ordinance-dumping site 50 nautical miles from Halifax Harbor, in the Atlantic Ocean. This organism is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) anaerobically at 10 degrees Celsius . RDX is a member of a family of nitramine compounds which are used in the production of explosives. These chemicals are toxic and can be a major source of contamination of marine and freshwater sediments. Shewanella sediminis HAW-EB3 (NCIMB 14036, DSM 17055) is the type strain and the genome sequence will provide information on the production and regulation of proteins involved in the degradation of RDX. (HAMAP: SHESH)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sediminis HAW-EB3 Negative Bacilli No 1 2 Facultative 10 Heterotroph Psychrophilic Aquatic Free living Singles- Pairs Nonsporulating No 425104 NC_009831.1 Bac0014567 Aliarcobacter butzleri RM4018 "Aliarcobacter butzleri RM4018 is a Gram-negative bacterium classified within the genus Aliarcobacter. This microbe is characterized by its distinct cellular morphology and staining properties, which are typical of Gram-negative organisms, indicating the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides.↵↵As a member of the Aliarcobacter genus, A. butzleri RM4018 is notable for its potential association with diverse environments, particularly in relation to its presence in food and water sources. While specific pathogenicity traits for the RM4018 strain are not detailed, members of the Aliarcobacter genus are often studied for their implications in food safety and public health, as they can be found in various food products, particularly poultry and seafood.↵↵The bacterium's metabolic capabilities and environmental resilience may contribute to its persistence in various ecological niches. Aliarcobacter butzleri has been observed to thrive in microaerophilic conditions, which may suggest adaptability to low-oxygen environments typically found in certain food matrices or natural habitats.↵↵A unique ecological insight into A. butzleri RM4018 could relate to its role in the microbial community structure, as it may participate in biogeochemical cycling or serve as an indicator organism in assessing the microbial quality of food and water. Further research is warranted to elucidate the full extent of its ecological interactions and potential implications for food safety." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri negative 367737 NC_009850.1 Bac0014568 Rickettsia canadensis str. McKiel "Rickettsia canadensis was first isolated from Haemaphysalis leporispalustris ticks removed from rabbits in Ontario, Canada. It was initially considered a member of the typhus group rickettsiae on the basis of antigenic similarities. However, according to recent molecular studies, it is thought to be a representative of a distinct group within the genus rickettsia, such as Rickettsia bellii. The role of Rickettsia canadensis as a human pathogen has not been definitively established. Serological evidence of infection has been reported in four patients presenting with an RMSF-like disease in California and Texas. A role for Rickettsia canadensis in acute cerebral vasculitis was also suspected in a patient from southwestern Ohio, based on serological studies that included immunoblot analysis. This description is based on PubMed 16223955. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia canadensis Negative Bacilli No 1 2 Aerobic Mesophilic HostAssociated Symbiotic Tick- Homo sapiens Nonsporulating Probable 293613 NC_009879.1 Bac0014569 Shewanella pealeana ATCC 700345 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella pealeana ATCC 700345 was originally isolated from the Atlantic squid for their capacity to respire on sulfur. This bacterium was able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and was closely related to RDX-mineralizing bacterium S. halifaxensis. RDX is a member of a family of nitramine compounds which are used in the production of explosives. Genome sequencing of the present strain together with S. halifaxensis will help determine the genetic process responsible for RDX degradation. On the other hand, Shewanella are ubiquitous in marine environment and play very important role in global carbon and nitrogen cycle. The present strain is moderately halophilic, requiring sodium ions for growth. It can live at low temperatures and by reducing heavy metals Mn (IV) and Fe (III) and non-metal electron acceptors such as sulfur, fumarate, trimethylamine- N -oxide (TMAO), and thiosulfate. Genome sequencing and comparative genomics will unlock the genes involved in metabolism of carbon, nitrogen, metal, and sulfur in marine environment. Comparative genomics will also provide insight into how marine bacteria evolve to adapt to cold and salty marine environment. Also, it is involved in marine carbon and nitrogen metabolism. (HAMAP: SHEPA)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella pealeana ATCC 700345 Negative Bacilli Yes 1 2 Facultative Heterotroph Mesophilic HostAssociated Free living Loligo pealei Pairs- Singles Nonsporulating No 398579 NC_009901.1 Bac0014570 Azorhizobium caulinodans ORS 571 "Azorhizobium caulinodans strain ORS571 is a microsymbiont of the water-tolerant tropical legume Sesbania rostrata, forming N2-fixing nodules not only on the roots but also on the stems. It contains nod, nif, and fix genes and so probably initiates nodulation like many of the rhizobia. A.caulinodans ORS571 is able to fix nitrogen in the free-living state, which is not the case for most rhizobia. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Azorhizobium Azorhizobium caulinodans ORS571 Negative 2 aerobic Mesophilic HostAssociated Symbiotic Sesbania rostrata No 438753 NC_009937.1 Bac0014571 Herpetosiphon aurantiacus DSM 785 "The phylum Chloroflexi, which is divided into two orders, the Chloroflexales and the Herpetosiphonales, is a deep-branching lineage of the Bacteria. Members of the former order synthesize BChls and are obligately or facultatively phototrophic, while members of the latter order do not synthesize BChls and are not phototrophs. Although members of both groups are designated as Gram-negative, they do not synthesize lipopolysaccharide and thus do not possess outer membranes.Herpetosiphon aurantiacus ATCC 23779 was isolated from Birch Lake, Minnesota USA. It is an ensheathed, gliding bacterium; the sheathes move with the bacterium which is unflagellated. It divides by septum formation and does not contain chlorophyll. It is the type strain (adapted from PubMed 5669912 and 15340781). (HAMAP: HERA2)" Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus ATCC 23779 Negative Filamentous Yes 1 1 Aerobic Chemoorganoheterotroph Mesophilic Multiple Free living Nonsporulating No 316274 NC_009972.1 Bac0014572 Petrotoga mobilis SJ95 "Petrotoga mobilis (strain DSM 10674 / SJ95) is a rod-shaped, sheathed , Gram-negative, thermophilic Thermotogales. It grows optimally at 58-60 degrees Celsius and at pH 6.5-7.0. It is able to reduce elemental sulfur to hydrogen sulfide. It is motile with a subpolar flagellation. The cells often appear singly, in pairs or in chains, within the sheath, sometimes with more than 20 small cells per sheath or with a single small cell within a long sheath. Petrotoga differs from the other Thermotogales genera by its higher salt tolerance and 16S rRNA sequence, which shows it to be a distinct lineage within this order. Petrotoga mobilis (strain DSM 10674 / SJ95) was isolated from the hot oilfield water of a North Sea oil reservoir. (EBI Integr8)" Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga mobilis SJ95 Negative Bacilli No 1 2 Anaerobic Thermophilic Specialized Free living Nonsporulating No 403833 NC_010003.1 Bac0014573 Lactobacillus helveticus DPC 4571 "Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. The genus Lactobacillus presently comprises more than 50 recognized species of non pathogenic bacteria which in addition to their probiotic effects are useful to human as indispensable agents for the fermentation of foods and feed.Lactobacillus helveticus DPC 4571 is a Swiss cheese isolate that has been thoroughly investigated as a starter and adjunct culture in cheese manufacture and demonstrates a number of highly desirable traits including rapid autolysis, reduced bitterness and increased flavor notes. It has two hundred and thirteen insertion sequence (IS) elements, ten times more than other fully sequenced lactobacilli. Genome alignments revealed an unprecedented level of genome stability between the Lactobacillus species considering the number of IS elements in the L. helveticus genome. Comparative analysis also indicated that the IS elements were not the primary agents of niche adaptation for the L. helveticus genome. A clear bias towards the loss of genes reported to be important for gut colonization was observed for the cheese culture but there was no clear evidence of IS associated gene deletion and decay for the majority of genes lost. An extraordinary level of sequence diversity exists between copies of certain IS elements in the DPC 4571 genome indicating they may represent an ancient component of the L. helveticus genome. (HAMAP: LACH4)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus DPC 4571 Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains No 405566 NC_010080.1 Bac0014574 Brucella canis ATCC 23365 "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucella canis is the causative agent of canine brucellosis and was first recognized in 1966 as a cause of abortion and reproductive failure. Canine brucellosis is common in Central and South America and in the southern states of USA. It has been diagnosed in commercial and research breeding kennels in several other countries, including Japan and China. It has been reported sporadically in Europe.Transmission between dogs occurs via mucous membranes, so the bacteria may enter the body through the nose, mouth, conjunctiva of the eye, and vagina. The majority of bacteria in infected dogs are secreted in semen and vaginal secretions, but bacteria may be present in milk, urine and saliva as well. The most common sign of brucellosis infection in a female dog is abortion between days 45 to 59 of gestation. The vaginal discharge and fetuses contain large numbers of Brucellae. When an infected female aborts, spread throughout a kennel can be very rapid. The persistent discharge after abortion contains extremely high numbers of organisms for 4 to 6 weeks. Milk also serves as another contaminant to the environment. Infected females may deliver both living and dead puppies. These surviving puppies are infected and will shed bacteria in their secretions. In addition to abortions, the disease can cause orchiepididymitis in males, and uveitis.Although veterinarians exposed to blood of infected animals are at risk, pet owners are not considered to be at risk for infection.Dogs with brucellosis should never be used for breeding and euthanasia is the only solution to the problem. These animals are a potential source of infection for other dogs and humans. Combination therapy of aminoglycosides and tetracyclines has been tried, but the treatment only makes the infected dog test ""false"" negative, when in fact the dog is still very infectious and contagious. There is unfortunately no vaccine for the prevention or treatment of canine brucellosis. (HAMAP: BRUC2)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella canis ATCC23365 Negative Cocci No 1 2 Aerobic Mesophilic HostAssociated Free living Nonsporulating Probable 483179 NC_010103.1 Bac0014575 Candidatus Sulcia muelleri GWSS Candidatus Sulcia muelleri GWSS.This strain is being sequenced for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Candidatus Karelsulcia Candidatus Karelsulcia muelleri GWSS Negative Mesophilic HostAssociated Symbiotic 444179 NC_010118.1 Bac0014576 Gluconacetobacter diazotrophicus PA1 5 "Gluconacetobacter diazotrophicus PA1 5 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as an aerobic diazotroph. This microbe exhibits an optimal growth temperature of 30°C and is associated with host environments, suggesting a potential symbiotic relationship with certain plant species. As a diazotroph, G. diazotrophicus PA1 5 possesses the ability to fix atmospheric nitrogen, which can be pivotal for enriching the nitrogen content in its habitat.↵↵The Gram-negative nature of this organism indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its adaptability in host-associated environments. Its rod shape and solitary cell arrangement are characteristic of various bacteria within the family Acetobacteraceae, which often play significant roles in fermentation processes.↵↵The aerobic metabolism of G. diazotrophicus PA1 5 allows it to thrive in oxygen-rich environments, potentially enhancing its nitrogen-fixing capabilities. This trait not only assists in bolstering soil fertility but may also facilitate plant growth by improving nutrient availability. The interplay between its nitrogen-fixing ability and the aerobic conditions of its habitat underscores the potential for G. diazotrophicus PA1 5 to contribute to sustainable agricultural practices, particularly in enhancing the resilience of crops to nutrient-deficient soils." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus Negative Rod No 1 2 Aerobe 30 Diazotroph Mesophilic HostAssociated Symbiotic Singles 272568 NC_010125.1 Bac0014577 Sorangium cellulosum So ce56 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 448385 NC_010162.1 Bac0014578 Bordetella petrii "Bordetella petrii is a Gram-negative, non-spore-forming rod-shaped bacterium that has garnered interest for its unique characteristics within the Bordetella genus. As a member of the Betaproteobacteria class, B. petrii exhibits morphological traits typical of this group, including its rod-like structure, which is indicative of its cellular organization. ↵↵The bacterium's Gram-negative nature suggests a complex cell wall structure composed of a thin peptidoglycan layer surrounded by an outer membrane, which is critical for its interaction with the environment and may influence its physiological capabilities. The absence of sporulation indicates that B. petrii relies on other survival strategies in response to environmental stresses rather than forming spores, which are commonly associated with resilience in many microorganisms.↵↵Research into the ecological role of Bordetella petrii suggests that it may be involved in the cycling of nutrients in various environments. Its metabolic pathways may facilitate interactions with other microorganisms, contributing to community dynamics in microbial ecosystems. This insight aligns with the understanding that bacteria within the Bordetella genus can play significant roles in their ecological niches, although specific interactions and ecological contributions of B. petrii warrant further investigation to fully elucidate its biological significance." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella petrii Gram-negative rod non-motile non-spore-forming 94624 NC_010170.1 Bac0014579 Rickettsia rickettsii str. Iowa "Rickettsia rickettsii is the causative agent of the Rocky Mountain spotted fever (RMSF) and is the prototype bacterium in the spotted fever group of rickettsiae. It is transmitted by hard ticks (Ixodidae). Rocky Mountain spotted fever is the most severe and most frequently reported rickettsial illness in the United States. It also occurs in Mexico and in Central and South America. The symptoms of the Rocky Mountain spotted fever may follow within one to fourteen days after the victim has been bitten. There is a high fever, with chills, muscle aches and a severe headache concentrated in the forehead area. Also, eyes may become red, muscles may feel weak and there may be body swelling. A rash also forms around the third to fifth day. RMSF affects about 800 people in the United States each year. Before anti-biotic treatment was available 20 to 30 percent of the cases were fatal. However, with the discovery of an antibiotic, the suffering and danger has decreased; it causes death in about 15 percent of its victims over age 70, and in only about two percent of infected victims under age 30. If an antibiotic is started rapidly, the mortality rate is ten percent.Rickettsia rickettsii (strain Iowa) is avirulent and defective in cell lysis. It does not induce fever in a guinea pig model of infection. A deletion truncates the rompA gene that codes for a major surface antigen. In addition R. rickettsii (strain Iowa) is defective in the processing of rOmpB, another major surface antigen. These factors most likely contribute to the avirulence of this strain. (HAMAP: RICRO)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rickettsii str. Iowa Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Symbiotic Homo sapiens Nonsporulating No 452659 NC_010263.3 Bac0014580 Actinobacillus pleuropneumoniae serovar 3 str. JL03 "Actinobacillus pleuropneumoniae, a Gram-negative, non-motile, facultatively anaerobic Pasteurellaceae, causes porcine pleuropneumonia, a highly contagious disease for which there is no effective vaccine. There are least twelve different serotypes, some of which produce no disease but others cause severe disease. Serotypes vary in different countries. Types 1, 5, 9, 11 and 12 are usually highly virulent and strains 3 and 6 are mild. The bacterium is carried in the tonsils and upper respiratory tract. It is transmitted short distances by droplet infection and only survives outside the pig for a few days.Actinobacillus pleuropneumoniae strain JL03 is an isolate of serotype 3 which is prevalent in China. Its genome is made up of a single circular chromosome encoding 2097 CDSs. It possesses a complete set of genes coding for enzymes of glycolysis, gluconeogenesis and non-oxidative pentose phosphate pathways. Genes coding for the key enzymes of the TCA cycle, citrate synthase, aconitase and isocitrate dehydrogenase as well as the genes coding for malate synthase and isocitrate lyase, essential for the glyoxylate pathway, are missing.The pore-forming Apx toxins, responsible for the hemorrhagic lesions of the disease, are encoded in an operon apxCABD. Different serotypes secrete different sets of Apx toxins, causing variations in their hemolytic and cytotoxic activities. The absence of apxICABD in strain JL03 confirms that it has the moderate toxicity specific to serotype 3.Actinobacillus pleuropneumoniae can use porcine transferrin, hemoglobin and ferrichrome. Approximately 2.6 % of the genome (55 genes) are involved in iron uptake. (HAMAP: ACTPJ)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae JL03 Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Sus Scrofa Chains - Pairs - Singles No 434271 NC_010278.1 Bac0014581 Thermoanaerobacter sp. X514 "Thermoanaerobacter sp. (strain X514) is an anaerobic thermophilic bacterium isolated by anaerobic enrichment culture from a deep subsurface sample (2000 m below the surface) taken from a core hole at the Piceance Basin, Colorado, USA. It can use a variety of electron donors, including glucose, acetate, hydrogen and xylose while reducing iron, chromium and uranium at 60 degrees Celsius. (EBI Integr8)" Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter sp. X514 X514 Positive Bacilli Yes 1 1 Anaerobic 60 Thermophilic Fresh water- Deep subsurface Free living Sporulating No 399726 NC_010320.1 Bac0014582 Shewanella halifaxensis HAW-EB4 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella halifaxensis (strain HAW-EB4) is an obligately respiratory denitrifying and RDX-mineralizing bacterium isolated from sediment in a munitions-dumping area of the Emerald Basin (depth of 215 m, Atlantic Ocean), offshore of Halifax Harbour (Nova Scotia, Canada). This psychrophilic, sodium cations-requiring and slightly halophilic bacterium is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) at 10 degrees Celsius. RDX is a member of a family of nitramine compounds which are used in the production of explosives. These chemicals are toxic and can be a major source of contamination of marine and freshwater sediments. (HAMAP: SHEHH)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella halifaxensis HAW-EB4 Negative Bacilli No 1 2 Facultative 10 Heterotroph Psychrophilic Marine- Sediment Free living Pairs- Singles Nonsporulating No 458817 NC_010334.1 Bac0014583 Acinetobacter baumannii SDF "Acinetobacter baumannii is a pathogenic species commonly isolated from the hospital environment and hospitalized patients. It is an aquatic organism, and is often cultured from liquid medical samples such as respiratory secretions, wounds, and urine. Acinetobacter also colonizes irrigating solutions and intravenous solutions. Although it has low virulence, it is capable of causing infection. Most isolates recovered from patients represent colonization rather than infection. When infections do occur, they usually occur in the blood, or in organs with a high fluid content, such as the lungs or urinary tract. Acinetobacter baumannii SDF is responsible for community-acquired infections, and is highly sensitive to antibiotics. This strain was isolated from the interior of body lice collected on homeless people living in France. Given that the louse interior is usually sterile, the presence of this strain can only be due to cryptic bacteremic episodes. Infections by this organism are becoming increasingly problematic due to the high number of resistance genes found in clinical isolates. Some strains are now resistant to all known antibiotics. Most of these genes appear to have been transferred horizontally from other organisms. Many of them cluster into a single genomic island in strain AYE as compared to strain SDF. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii SDF Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 509170 NC_010395.1 Bac0014584 Leuconostoc citreum KM20 "Lactobacilli are normal inhabitants of the gastrointestinal tract of man and animals where they are widely considered to exert a number of beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of a healthy intestinal microflora. Leuconostoc citreum is a dominant microbe during the early and mid-stages of kimchi fermentation. Kimchi is a spicy traditional Korean dish made of fermented napa cabbage and/or giant white radish with other vegetables and spices. Strain KM20 was isolated from napa kimchi fermented at 10 degrees Celsius and suppresses the growth of pathogens such as Bacillus cereus, Listeria monocytogenes and others. (HAMAP: LEUCK)" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc citreum KM20 Positive Cocci No 1 1 Facultative Mesophilic Free living Singles Nonsporulating No 349519 NC_010466.1 Bac0014585 Shewanella woodyi ATCC 51908 "Shewanella woodyi (strain ATCC 51908 / MS32) was originally isolated from the squid, sediment and water of the Alboran Sea (mixture of Atlantic and Mediterranean Sea) as a bioluminescent bacterium. Like its relative S. sediminis , S. woodyi was also able to degrade RDX with relatively lower activity. Genome sequencing of S. woodyi and S. sediminis as a pair will help understand how species of Shewanella degraded RDX. Shewanella are ubiquitous in marine environment and play important role in global carbon and nitrogen cycles. S. woodyi and S. sediminis are two bacteria from different geological regions of marine environment and have many complementary properties in carbon and nitrogen metabolism. Genome sequencing and comparative genomics of multiple strains of Shewanella will be used to unlock the genetic processes involved in carbon, nitrogen cycles and biodegradation of pollutants in marine environment. It is used in comparative genomics and in the carbon and nitrogen cycle in the marine environment. It's growth is at low temperature. (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella woodyi ATCC 51908 Negative Bacilli Yes 1 2 Facultative 25 Heterotroph Mesophilic Multiple Free living Pairs- Singles Nonsporulating Yes 392500 NC_010506.1 Bac0014586 Leptothrix cholodnii SP-6 "An aerobic, sheath forming, filamentous bacteria, Leptothrix species oxidize Mn2+ and Fe2+ and are usually found in oligotrophic, slowly running, iron- and manganese-rich water. L.cholodnii SP-6 is the only Leptothrix species which retains it sheath under laboratory conditions. In rich medium cultures contain individual unsheathed cells, as well as filaments of cells inside sheaths encrusted with manganese or iron oxides. This organism produces rough colonies with filamentous edges on rich agar, although it occasionally contains sheathless variants that produce smooth colonies (adapted from PubMed 8573492). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Leptothrix Leptothrix cholodnii SP-6 Negative Filamentous No 2 Aerobic Heterotroph Mesophilic Aquatic Free living No 395495 NC_010524.1 Bac0014587 Cupriavidus taiwanensis LMG 19424 "Cupriavidus taiwanensis LMG19424 (originally called Ralstonia taiwanensis or Wautersia taiwanensis), a betaproteobacteria of the rhizobia group, was isolated from a nodule from the legume species Mimosa pudica in Taiwan. The genome of strain LMG19424 is comprised of three replicons, 2 chromosomes of 3.5 Mb, and 2.4 Mb, and a symbiotic plasmid of 0.5 Mb which carries the genes that are essential for nodulation and nitrogen fixation (not sequenced in this project). C.taiwanensis is motile by means of peritrichous flagella and grows aerobically at 28 to 37 degrees C. It is catalase- and oxidase-positive, reduces nitrate, hydrolyzes aesculin, and is susceptible to colistin. It has only recently been discovered that in addition to alphaproteobacteria some betaproteobacteria are also able to nodulate legumes and fix atmospheric nitrogen. Thus it is only distantly related to most known nodulating/nitrogen fixing bacteria and will be interesting to study for its differences from them (adapted from PubMed 11594603 and http://www.genoscope.cns.fr/spip/Ralstonia-taiwanensis-an-atypical.html). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus taiwanensis LMG 19424 Negative Bacilli No 1 2 Facultative Heterotroph Mesophilic HostAssociated Symbiotic Nonsporulating No 977880 NC_010528.1 Bac0014588 Streptomyces griseus subsp. griseus NBRC 13350 "The genus Streptomyces consists of soil and water Gram positive filamentous bacteria well known for their ability to produce complex secondary metabolites including many antibiotics. Additionally they undergo complex multicellular development, with spores germinating to form a branched, multinucleoid substrate mycelium, which then produces an aerial mycelium which septates into uninucleoid spores. Streptomyces is also unusual in having linear chromosomes with terminal inverted repeats with terminal proteins covalently bound to their 5' ends.Streptomycin, the first aminoglycoside antibiotic, was discovered more than 60 years ago, is still used to treat tuberculosis and is produced commercially by S.griseus. Analysis of the genome of strain JCM 4626 / NBRC 13350 indicates the presence of 34 gene clusters or genes for the biosynthesis of known or unknown secondary metabolites. (HAMAP: STRGG)" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseus NBRC 13350 Positive Tailed Yes 1 1 Aerobic 25 Mesophilic Multiple Free living Filaments Sporulating No 455632 NC_010572.1 Bac0014589 Mycobacterium marinum M "Mycobacterium marinum, a ubiquitous pathogen of fish and amphibia, is a near relative of Mycobacterium tuberculosis, the etiologic agent of tuberculosis in humans. It is Gram-positive, rod-shaped, facultative anaerobic bacterium commonly found in various aquatic environments around the world, including swimming pools and drinking water. In 1926, Joseph D. Aronson isolated a Mycobacterium from tubercles observed predominantly in the spleen and liver of diseased fish that had died in the Philadelphia Aquarium and named it M. marinum. It was subsequently shown to also be a human pathogen when it was isolated again much later in a swimming pool-associated outbreak of human granulomatous skin lesions, although in this report the Mycobacterium was mistakenly given a new species name, Mycobacterium balnei, a name that is no longer used. This bacterium causes a tuberculosis-like disease in frogs, fish and other poikilothermic animals, and a peripheral granulomatous disease in humans. M. marinum infection of humans, called fish tank or aquarium tank granuloma, typically occurs when M. marinum is inoculated through the skin by cuts and scratches following direct contact with an infected fish or contaminated aquatic environments. The ensuing granulomatous infection generally limited to the skin and soft tissues extremities is pathologically indistinguishable from M. tuberculosis dermal disease. Its optimal growth temperature is 35 degrees Celsius (in Middlebrook 7H9 medium). Its lower optimal growth temperature likely explains its causing systemic disease in poikilotherms animals and a superficial disease, restricted cooler extremities of the body, in warm-blooded animals. In contrast to M. tuberculosis, it is unable to reduce nitrate and produces characteristic bright yellow carotenoid pigments when exposed to light. These photochromogenic pigments protect it from UV damage in incident sunlight by reducing singlet oxygen species. It can form biofilms. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium marinum M Positive Bacilli No 1 1 Aerobic 32 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 216594 NC_010604.1 Bac0014590 Limosilactobacillus reuteri subsp. reuteri JCM 1112 "Limosilactobacillus reuteri subsp. reuteri JCM 1112 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, which allows it to thrive in diverse habitats. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes.↵↵The ability of L. reuteri JCM 1112 to adapt to various environments suggests a versatile metabolism and potential for ecological resilience. Its aerobic nature may facilitate its role in the fermentation processes within its habitats, contributing to the breakdown of organic materials and influencing microbial community dynamics. Understanding its specific environmental niches could provide insights into its functional contributions to microbial ecosystems and potential applications in biotechnology or food fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 557433 NC_010609 Bac0014591 Limosilactobacillus fermentum IFO 3956 "Limosilactobacillus fermentum IFO 3956 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This species is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which potentially allows it to thrive in diverse environments. ↵↵L. fermentum IFO 3956 is found in multiple habitats, suggesting a versatile ecological niche that may include fermented foods, the gastrointestinal tracts of various animals, and other environments conducive to lactic acid bacteria. Its ability to ferment sugars and produce lactic acid is consistent with the metabolic characteristics typical of this genus, which plays a significant role in food fermentation processes and may contribute to food preservation.↵↵The diverse habitats of L. fermentum IFO 3956 imply that this microbe could be integral to various microbial communities, possibly influencing the fermentation dynamics and the overall health of the ecosystems it inhabits. Its chain formation may also suggest a potential for cooperative interactions within these communities, enhancing its survival and functional roles in fermentation and microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 334390 NC_010610.1 Bac0014592 Kocuria rhizophila DC2201 "Kocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201) is a coccoid, halotolerant (tolerated up to 10% NaCl in growth media), phenol-degrading Gram-positive bacterium isolated from the rhizosphere of narrowleaf cattail (Typha angustifolia). Members of the genus Kocuria were isolated from a wide variety of natural sources including mammalian skin, soil, the rhizosphere, fermented foods, clinical specimens, fresh water and marine sediments, suggesting that each Kocuria species is highly adapted to respective ecological niche. K. rhizophila is also important in industrial applications; e.g., due to its small genome size, ability to grow rapidly and at high cell density, and robustness of the cells at various growth conditions, it would be highly advantageous for the development of bacterial bioconversion system which could be used under harsh conditions such as in organic solvents. The presence of probable metabolic pathways for the transformation of phenolic compounds generated from the decomposition of plant materials, and the presence of a large number of genes associated with membrane transport, particularly amino acid transporters and drug efflux pumps, may contribute to the organisms utilization of root exudates as well as the tolerance to various organic compounds. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rhizophila DC2201 Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Singles - Tetrads No 378753 NC_010617.1 Bac0014593 Shigella boydii CDC 3083-94 "Shigella is a Gram-negative, non-sporulating, facultative anaerobe bacterium that causes dysentery or shigellosis in man. Shigella are highly invasive in the colon and the rectum, and are able to proliferate in the host cell cytoplasm, triggering an inflammatory reaction. Shigella was recognized as the etiologic agent for bacillary dysentery in the 1890's, and adopted as a genus in the 1950's and subgrouped into four species. However, a recent genetic study argues that Shigella emerged from multiple independent origins of E.coli 35,000-270,000 years ago and may not constitute a genus. S.boydii is mainly epidemic to the Indian subcontinent. Comparison of 20 E.coli/Shigella strains shows the core genome to be about 2000 genes while the pan-genome has over 18,000 genes. There are multiple, striking integration hotspots that are conserved across the genomes, corresponding to regions of abundant and parallel insertions and deletions of genetic material.Shigella boydii BS512 was originally isolated from a 12-year-old boy in Arizona, USA. It is serotype 18 and is a member of Group 1 as determined by sequence analysis. The virulence of S. boydii BS512 has been verified through in vitro experimentation via invasion of HeLa cells. (HAMAP: SHIB3)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella boydii BS512 Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 344609 NC_010657.1 Bac0014594 Methylorubrum populi BJ001 "Methylorubrum populi BJ001 is a Gram-negative, rod-shaped bacterium that exhibits a unique cellular arrangement, often found in pairs or singles. This microbe is classified as a methylotroph, indicating its ability to utilize methanol and other one-carbon compounds as an energy source. It thrives optimally at a temperature of 20.0°C, which suggests a preference for cooler environments that may be associated with its natural habitats. ↵↵Methylorubrum populi BJ001 is strictly aerobic, necessitating the presence of oxygen for its metabolic processes. Its habitat is characterized as host-associated, which implies a potential symbiotic relationship with its host organism. This association could facilitate nutrient cycling or contribute to the host's metabolic capabilities, although specific interactions remain to be elucidated.↵↵The ecological significance of Methylorubrum populi BJ001 may lie in its role in the degradation of methanol in host-associated environments, possibly influencing carbon flux and nutrient dynamics within its ecosystem. Further research into its metabolic pathways and interactions with host organisms could provide insights into its contributions to microbial ecology and potential applications in bioremediation or biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum populi Negative Rod No 1 2 Aerobe 20 Methylotroph Mesophilic HostAssociated Free living Pairs - Singles 441620 NC_010721.1 Bac0014595 Porphyromonas gingivalis ATCC 33277 "Porphyromonas gingivalis is a Gram-negative anaerobe. It is a secondary colonizer of the oral cavity and has a role in the initiation and progression of periodontal disease, which is the major cause of tooth loss in industrial nations. It is a chronic inflammatory disease of the periodontium that leads to erosion of the attachment apparatus and supporting bone for teeth and is one of the most frequently occurring infectious diseases in humans. Recently, a number of epidemiological studies have shown significant relationships between periodontal diseases and cardiovascular diseases. P.gingivalis, which is often found in deep periodontal pockets of humans, is asaccharolytic and highly proteolytic and produces a broad array of potential virulence factors involved in tissue colonization and destruction as well as host defense perturbation. P. gingivalis strains are divided into virulent and less-virulent strans; ATCC 33277, the type strain, is a less-virulent strain unlike W83, the only other currently sequenced member of the species (PORGI). It produces only a localized abscess 3 days after subcutaneous inoculation (adapted from PubMed 18524787). (HAMAP: PORG3)" Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis ATCC 33277 Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 431947 NC_010729.1 Bac0014596 Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium sp. (strain YO3AOP1) is a thermophilic bacterium that gets energy through the oxidation of hydrogen or reduced sulfur compounds. (EBI Integr8) Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium sp. YO3AOP1 YO3AOP1 Negative Bacilli Yes 1 2 Facultative Heterotroph- Chemolithoautotroph Thermophilic Specialized Free living No 436114 NC_010730.1 Bac0014597 Brucella abortus S19 "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucella abortus (strain S19) is a spontaneously attenuated strain discovered by Dr. John Buck in 1923. However, the underlying molecular or physiological mechanisms causing the loss of virulence is not well understood. B. abortus is the primary cause of bovine brucellosis, which results in enormous (billions of dollars) economic losses due primarily to reproductive failure and food losses. It is highly infectious, and can be spread through contact with infected animal products or through the air, making them a potential bioterrorism agent. In man, it causes undulant fever, a long debilitating disease that is treated by protracted administration of antibiotics. Since early 1930s, this strain has been used worldwide as an effective vaccine to prevent brucellosis in cattle until it was replaced by strain RB51 during the 1990s. Once the organism has entered the body, it can become intracellular, and enter the blood and lymphatic regions, multiplying inside phagocytes before eventually causing bacteremia (spread of bacteria through the blood). Virulence may depend on a type IV secretion system which may promote intracellular growth by secreting important effector molecules. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella abortus S19 Negative Rod No 1 2 Facultative aerobe 37 Mesophilic Multiple Free living Homo sapiens Singles Nonsporulating Yes 430066 NC_010740.1 Bac0014598 Methylacidiphilum infernorum V4 "Methylacidiphilum infernorum (isolate V4) is an extremely acidophilic aerobic methanotrophic bacterium isolated from the Hell's Gate (Tikitere), a methane-emitting geothermal field in the North of New Zealand. It is one of the first methanotrophic representative of the Verrucomicrobia, a diverse phylum that unites organisms with a remarkably broad range of lifestyles (many terrestrial and aquatic habitats), from intracellular parasites with some of the smallest known genomes to complex soil organisms. Methylacidiphilum infernorum , but also Acidimethylosilex fumarolicum (strain SolV) from Solfatara volcano mudpot (Italy), and Methyloacida kamchatkensis (strain Kam1) from an acidic hot spring in Kamchatka (Russia), are the the only known group of aerobic methanotrophs outside of the Proteobacteria phylum, and are by far the most acidophilic bacteria capable of methane oxidation The organism grows optimally at pH between 2.0 to 2.5 and temperature of 60 degrees Celsius when supplemented with 25% (v/v) methane as the sole source of energy. It is able to utilize methane as sole carbon source. M. infernorum possesses a streamlined genome but seems to have acquired numerous genes including those for enzymes of methylotrophic pathways via horizontal gene transfer, in particular, from Proteobacteria. (EBI Integr8)" Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Candidatus Methylacidiphilum infernorum V4 No 1 2 Aerobic Autotroph- Methanotroph Thermophilic Specialized Free living No 481448 NC_010794.1 Bac0014599 Chlorobium limicola DSM 245 "Chlorobium limicola is a green sulfur bacteria. Cells are rod-shaped, approximately 1.0 um wide and non-motile. Photosynthetic pigments are BChl c with chlorobactene as the major carotenoid, or in some strains, BChl e with isorenieratene. Photoautotrophic growth occurs with sulfide and sulfur as photosynthetic electron donors; molecular hydrogen and thiosulfate may be used. In the presence of sulfide and bicarbonate, some simple organic compounds are photoassimilated. Freshwater bacteria without a requirement for sodium chloride. Vitamin B12 is not required for growth. This is the type strain (adapted from PubMed 12892110). (EBI Integr8)" Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola DSM 245 Negative Rod No 1 2 Anaerobe Photosynthetic - Photoautotroph Mesophilic Aquatic Free living Chains - Singles Nonsporulating No 290315 NC_010803.1 Bac0014600 Candidatus Amoebophilus asiaticus 5a2 Candidatus Amoebophilus asiaticus 5a2. Candidatus Amoebophilus asiaticus 5a2 is an obligate endosymbiont found in Acanthamoeba sp. TUMSJ-321. This bacterial strain could neither be maintained outside its original host nor transferred to other amoebae. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Cytophagia Cytophagales Amoebophilaceae Candidatus Amoebophilus Candidatus Amoebophilus asiaticus 5a2 Negative Bacilli Mesophilic HostAssociated Free living 452471 NC_010830.1 Bac0014601 Stenotrophomonas maltophilia K279a "The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.Stenotrophomonas maltophilia (strain K279a) is the third most common nosocomial non-fermenting Gram-negative bacilli. This is a nosocomial opportunistic pathogen of the Xanthomonadaceae. The organism has been isolated from both clinical and soil environments in addition to the sputum of cystic fibrosis patients and the immunocompromised. Routinely, it resides in showerheads and other moist places where it grows as biofilm. The two most common diseases caused by S. maltophilia are bacteremia and pneumonia with infection being via an indwelling catheter or ventilator, respectively. The sequence reveals an organism with a remarkable capacity for drug and heavy metal resistance. This organism can act as a reservoir of antimicrobial drug resistance determinants in a clinical environment, which is an issue of considerable concern. (HAMAP: STRMK)" Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia K279a Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living Homo sapiens Yes 522373 NC_010943.1 Bac0014602 Rhizobium etli CIAT 652 "Rhizobium etli, a soil-dwelling, symbiotic nitrogen-fixing bacterium, is the main nodulator of Phaseolus vulgaris, the common bean. It contains one chromosome and 6 large plasmids, which contribute approximately one third of the genome. This strain is of considerable agronomic importance. (HAMAP: RHIEC)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli CIAT 652 Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Phaseolus vulgaris Singles Nonsporulating No 491916 NC_010994.1 Bac0014603 Rhodopseudomonas palustris TIE-1 "Rhodopseudomonas palustris are phototrophic, purple non-sulfur bacteria commonly found in soils and water. They fix carbon dioxide and nitrogen, produce hydrogen, and degrade diverse biomass-associated aromatic compounds under anaerobic (phototrophic) and aerobic (heterotrophic) conditions. Against the background of general metabolic versatility of the R. palustris species there is considerable strain-to-strain diversity. Strain TIE-1, a genetically tractable bacterium, was isolated from an iron-rich mat from School Street Marsh in Woods Hole, USA. It is able to couple the oxidation of ferrous iron [Fe(II)] to reductive CO(2) fixation by using light energy, a form of photosynthesis that may be very old. The final product of Fe(II) oxidation accumulates exclusively outside the cell in the form of Fe(III) precipitates. Under anaerobic conditions, TIE-1 grows photoautotrophically with Fe(II), H2, or thiosulfate as the electron donor and photoheterotrophically with a variety of organic carbon sources; it also grows chemoheterotrophically in the dark. Phototrophically grown cells contain lamellar intracytoplasmic membranes (adapted from PubMed 16085840). (HAMAP: RHOPT)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris TIE-1 Negative Bacilli Yes 1 2 Facultative 25 Photolithoautotroph Mesophilic Soil Free living Singles No 395960 NC_011004.1 Bac0014604 Pelodictyon phaeoclathratiforme BU-1 "Pelodictyon phaeoclathhratiforme is a green sulfur bacterium frequently observed in stratified freshwater lakes where light reaches sulfide-containing water layers; it frequently represents the dominant green sulfur bacterium in this habitat. BU 1, the type strain, was isolated from water samples of Buchensee, Germany in 1989. This lake is meromictic, that is the surface and deep waters do not mix; BU 1 was isolated from 9 m deep water. Like all green sulfur bacteria, this species is strictly anaerobic and obligately phototrophic. Photosynthetic pigments comprise mainly bacteriochlorophyll e and isorenieratene/b -isorenieratene plus small amounts of bacteriochlorophyll a. It is actually a brown color. P.phaeoclathratiforme forms net-like microcolonies and has intracellular gas vesicles. Ternary fission, which leads to the formation of ring-shaped and branched colonies, is observed at growth-limiting light intensities. Gas vesicles are proteinaceous hollow rigid structures which occur only in prokaryotic cells which are impermeable to liquid but permeable to gases. Because of their gas content, gas vesicles decrease the density of the cell and may provide neutral or even positive buoyancy if present in sufficient amounts. Like ternary fission, gas vesicles are exclusively observed in cells grown at light intensities below 5 umol photons m-2 s-1. Unlike some cyanobacteria, cells of P.phaeoclathratiforme do not attain positive buoyancy and thus are unlikely to rise to the lake surface and to leave their habitat. The capability of buoyant density regulation offers one explanation for the dominance of P.phaeoclathratiforme in many stratified lakes (modified from http://genome.jgi-psf.org/finished_microbes/pelph/pelph.home.html). (HAMAP: PELPB)" Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon phaeoclathratiforme BU-1 Negative Bacilli No 1 2 Anaerobic 15 Phototroph- Photosynthetic Mesophilic Multiple Free living Singles Nonsporulating 324925 NC_011060.1 Bac0014605 Anaeromyxobacter sp. K As its name suggests this bacteria is capable of anaerobic growth. They are slender Gram-negative rods that exhibit gliding motility and form spore-like structures. They may be useful in bioremediation of contaminated sites. (EBI Integr8) Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. K K Negative Bacilli Yes 1 2 Anaerobic Heterotroph Mesophilic Terrestrial Free living Sporulating No 447217 NC_011145.1 Bac0014606 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Agona str. SL483. Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This strain will be used for comparative analysis with other Salmonella serovars. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica SL483 Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Chains - Singles Nonsporulating Yes 454166 NC_011148.1 Bac0014607 Salmonella enterica subsp. enterica serovar Gallinarum str. "Salmonella enterica subsp. enterica serovar Gallinarum is a Gram-negative bacterium characterized by its spirilla shape and a tendency to arrange in chains or single cells. This microbe thrives at an optimal temperature of 37.0°C, reflecting its adaptation to host-associated environments. As a chemoorganotroph, it derives energy from organic compounds, which aligns with its habitat as it is often found within the gastrointestinal tracts of various hosts. ↵↵The microaerophilic nature of Salmonella Gallinarum suggests that it requires lower levels of oxygen for optimal growth, which is consistent with the conditions found in the intestines of animals. This adaptation may play a significant role in its interactions with the host microbiome and its ability to colonize and persist in host environments. ↵↵An interesting ecological insight into Salmonella Gallinarum is its potential role in the gut microbiota of birds, where it may influence the microbial community structure and metabolic processes. This emphasizes the importance of understanding host-associated microbes not only in terms of their pathogenic potential but also in their contributions to the complex dynamics of host microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NC_011274.1 Bac0014608 Ureaplasma urealyticum serovar 10 str. ATCC 33699 "Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) is part of the normal flora of the human urogenital tract. This organism, however, can cause urethritis and has been associated with spontaneous abortion, premature birth, meningitis, and a severe respiratory disease of premature infants. U. urealyticum strains exhibit antigenic heterogeneity. Isolates obtained from human urogenital tract have been classified into 14 recognized serovars which show no serological cross-reactivity with ureaplasmas from other hosts and uniquely express human immuoglobulin A1 protease activity. U. urealyticum formerly consisted of 2 biovars. Biovar 1, which includes serovars 1, 3, 6, and 14 has been designated U. parvum, while biovar 2 (serovars 2, 4, 5, and 7-13) has been designated U. urealyticum. (EBI Integr8)" Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma urealyticum ATCC 33699 Positive Cocci No 1 1 Facultative 37 Mesophilic HostAssociated Free living Homo sapiens Singles Yes 565575 NC_011374.1 Bac0014609 Streptococcus pyogenes NZ131 "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes NZ131 Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs Nonsporulating Yes 471876 NC_011375.1 Bac0014610 Rhodospirillum centenum SW "Rhodospirillum centenum (also known as Rhodocista centenaria) is a thermotolerant alphaproteobacteria that is closely related to species of Azospirillum. It exhibits a complex life cycle involving differentiation from swim to swarm cells, as well as differentiation into heat and dessication resistant resting cysts. Its optimal growth temperature is 44 degrees Celsius with a maximal growth temperature of 48 degrees Celsius. Cysts can survive temperatures as high as 65 degrees Celsius. It metabolizes a unique set of carbon sources, is unable to use malate or other C 4 dicarboxylic acids as a carbon source, and is also unable to repress photosystem synthesis in the presence of molecular oxygen. Rhodospirillum centenum is capable of efficiently fixing nitrogen under aerobic growth conditions, which has important agricultural implications. R. centenaria is thus a model organism for cyst cellular differentiation in proteobacteria. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillum Rhodospirillum centenum SW Negative Spirilla Yes 1 2 Facultative 40 Mesophilic Aquatic No 414684 NC_011420.2 Bac0014611 Helicobacter pylori P12 "Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori P12 Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 570508 NC_011498.1 Bac0014612 Bacillus cereus AH187 "Bacilli are an extremely diverse group of bacteria that include both the causative agent of anthrax (Bacillus anthracis) as well as several species that synthesize important antibiotics. In addition to medical uses bacillus ,spores, due to their extreme tolerance to both heat and disinfectants, are used to test heat sterilization techniques and chemical disinfectants. Bacilli are also used in the detergent manufacturing industry for their ability to synthesize important enzymes.The sequence for the genome of Bacillus subtilis was completed in 1997 and was the first published sequence for a single-living bacterium. The genome is 4.2 Mega-base pairs long with with 4100 protein-coding regions. Bacillus subtilis has a plant growth promoting rhizobacterium shown to synthesize antifungal peptides. This ability has lead to the use of B. subtilis in biocontrol. B. subtilis has been shown to increase crop yields, although it has not been shown whether this is because it enhances plant growth, or inhibits disease growth.The genome of Bacillus anthracis is 5,227,293 base pairs long with 5,508 predicted protein-coding regions. The genome of B. anthracis is highly homologous with the genomes of both B. cereus and B. thuringiensis which have also been sequenced. The genome of B. anthracis has only 141 proteins that do not have a match in the protein set of B. cereus. Almost all of the virulence factors associated with anthrax are coded on its two plasmids and, surprisingly, almost all of these genes have homologues in B. cereus. This suggests that these virulence-enhancing genes are not specifically unique to Bacillus anthracis, but rather are part of the common array of genes of the B. cereus group (of which B. anthracis, B. cereus, and B. thuringiensis are all a part). B. anthracis also seems to have a decreased capacity for the extensive carbohydrate metabolism seen in B. subtilis, but possesses the genes for the cleavage of extracellular chitin and chitosan, which confirms its close relationship with the insect pathogen B. thuringiensis.Bacilli are rod-shaped, Gram-positive, sporulating, aerobes or facultative anaerobes. Most bacilli are saprophytes. Each bacterium creates only one spore, which is resistant to heat, cold, radiation, desiccation, and disinfectants. Bacilli exhibit an array of physiologic abilities that allow them to live in a wide range of habitats including many extreme habitats such as:desert sands, hot springs, and Arctic soils. Species in the genus Bacillus can be thermophilic, psychrophilic, acidophilic, alkaliphilic, halotolerant, or halophilic and are capable at growing at pH values, temperatures, and salt concentrations where few other organisms can survive.Due to the metabolic diversity in the genus Bacillus, bacilli are able to colonize a variety of habitats ranging from soil to insects, to humans. Bacillus thuringiensis parasitizes insects, and is commercially used form pest control. Although the most well known of the bacilli are the pathogenic species, most bacillus are saprophytes that make their living off of decaying matter. Still others, namely Bacillus subtilis, inhabit the rhizosphere, which is the interface between plant roots and the surrounding soil. The plants roots and associated biofilm can have a significant effect of on the chemistry of the soil, creating a unique environment.It has recently been shown that Bacillus subtilis engages in cannibalism. They use cannibalism as the easy way out in extreme cases. For survival in harsh environments, bacilli can form spores, but it is very costly to them energy-wise. An easier way, is for the bacteria to produce antibiotics that destroy neighboring bacilli, so that their contents may be digested allowing for the survival of a few of the bacteria. Essentially, what they are doing is snacking on their fellow bacilli, to tide them over, hoping for the environment to pick back up.Bacilli cause an array of infections from ear infections to meningitis, and urinary tract infections to septicemia. Mostly they occur as secondary infections in immunodeficient hosts or otherwise compromised hosts. They may exacerbate previous infection by producing tissue-damaging toxins or metabolites that interfere with treatment.The most well known disease caused by bacilli is anthrax, caused by Bacillus anthracis. Anthrax has a long history with humans. It has been suggested that the fifth and sixth plagues of Egypt recorded in the Bible (the fifth attacking animals, the sixth, known as the plague of the boils, attacking humans). In the 1600s anthrax was known as the ""Black bane"" and killed over 60,000 cows. Anthrax has more recently been brought to our attention as a possible method for bioterrorism. The recent anthrax mailings have brought acute public attention to the issue and sparked extensive research into the devastating disease.Anthrax is primarily a disease of herbivores who acquire the bacterium by eating plants with dust that contains anthrax spores. Humans contract the disease in three different ways. Cutaneous anthrax occurs when a human comes into contact with the spores form dust particles or a contaminated animal or carcass through a cut or abrasion. Cutaneous anthrax accounts for 95% of anthrax cases worldwide. During a 2-3 day incubation period the spores germinate, vegetative cells multiply, and a papule develops. Over the following days the papule ulcerates, dries and blackens to form the characteristic eschar. The process is painless unless infected with another pathogen.Gastrointestinal anthrax is contracted by ingesting contaminated meat. It occurs in the intestinal mucosa when the organisms invade the mucosa through a preexisting lesions. It progresses the same way as cutaneous anthrax. Although it is extremely rare in developed countries it has a very high mortality rate.Pulmonary anthrax is the result of inhaled spores that are transported to the lymph nodes where they germinate and multiply. They are then taken into the blood stream and lymphatics culminating in systemic arthritis which is usually fatal. (From http://microbewiki.kenyon.edu/index.php/Bacillus) (MicrobeWiki: Bacillus)" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus AH187 Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Homo sapiens Chains Sporulating Yes 405534 NC_011654.1 Bac0014613 Dictyoglomus turgidum DSM 6724 "Dictyoglomus turgidum (strain Z-1310) is an extremely thermophilic bacterium isolated from a hot spring in the Uzon volcano caldera in Kamchatka. It is the type strain. It degrades cellulose, pectin, starch, but grows only weakly on solid polysaccharides, including microcrystalline cellulose. (EBI Integr8)" Pseudomonadati Dictyoglomota Dictyoglomia Dictyoglomales Dictyoglomaceae Dictyoglomus Dictyoglomus turgidum DSM 6724 Positive Bacilli 2 Anaerobic 45 organotroph; chemotroph Thermophilic Specialized Free living No 515635 NC_011661.1 Bac0014614 Escherichia fergusonii ATCC 35469 "Escherichia fergusonii is the bacteria that is most closely related to E.coli. They are Gram-negative rods, oxidase negative, catalase positive, and usually motile, reduce nitrate to nitrite and ferment D-glucose. Strain ATCC 35469, the type strain, was isolated from the feces of a 1 year old boy, and may be commensal. It was previously known as CDC Enteric Group 10. The type strain is not virulent in a mouse model, however E.fergusonii has been isolated from human blood, urine and an arm wound. It has also been isolated from a number of other animals such as cow, pig, horse and turkey (partially adapted from PubMed 3968204). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia fergusonii ATCC 35469 Negative Bacilli No 1 2 Facultative Mesophilic Multiple Free living Homo sapiens Pairs- Singles Nonsporulating 585054 NC_011740.1 Bac0014615 Vibrio atlanticus "Vibrio atlanticus is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells and is characterized as a heterotrophic organism. This microbe thrives in aquatic environments, where it demonstrates a facultative oxygen requirement, allowing it to adapt to varying levels of dissolved oxygen in its habitat. ↵↵As a member of the Vibrio genus, V. atlanticus is part of a diverse group of bacteria known for their ecological versatility and association with marine environments. The ability to grow in the presence or absence of oxygen suggests that this organism can exploit a range of organic substrates, enabling it to thrive in nutrient-rich aquatic ecosystems. ↵↵Its presence in various aquatic habitats highlights its potential role in biogeochemical cycles, particularly in the decomposition of organic matter. This capability may contribute to nutrient cycling and energy flow within marine food webs, underscoring the significance of V. atlanticus in maintaining the ecological balance in its aquatic surroundings. Further research into its functional role could provide insights into the dynamics of microbial communities in marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio atlanticus Negative Rod No 1 2 Facultative Heterotroph Mesophilic Aquatic Free living Singles 693153 NC_011744.2 Bac0014616 Escherichia coli 55989 "10) polysomes or poly-ribosomesThe outer cell membrane or outer membrane (OM) consists of a lipid bilayer structure composed of an outer layer or leaflet consisting of lipopolysaccharide (LPS) and an inner leaflet consisting of phospholipids. LPS is composed of 3 components: lipid A, a branched sugar chain and the O-antigen. Lipid A is made of 2 glucosamines attached to phosphates and linked to C14 3-hydroxy myristic acid. The branched sugar consists of two types of sugars, one a heptose and the other keto-deoxyoctonoic acid. The O-antigen consists of a long (up to 40 sugars) carbohydrate chain. Each LPS unit is covalently linked to form a trimer through pyrophosphate linkages to the sugars of lipid A. LPS is highly immunogenic and frequently toxic (i.e. E. coli O157). The other major components of the outer membrane are proteins -- largely consisting of porins (approximately 60,000) which coexist with LPS. The outer membrane is a barrier that is quite resistant to chemicals and hydrophobic compounds, including antibiotics. Porins are passive diffusion channels that allow hydrophilic molecules (i.e. nutrients) of up to 800 daltons to pass through. The width of the outer membrane is about 10-15 nm.The cell wall, which lies just below the outer membrane is composed of peptidoglycan (also known as murein or Braun's lipoprotein) which, in turn, is covalently bound to the outer membrane. The cell wall prevents the cell from being osmotically lysed and gives the cell its characteristic shape. It is technically a single supermolecule. Peptidoglycan (PG) is a loosely (30%) cross-linked polymer consisting of covalently linked sugar and peptide units. The sugar units are N-acetylgulocsamine and N-acetylmuramic acid. The peptides are tetrapeptides consisting of L-Ala-D-Gly-DAP-D-Ala, where DAP is diaminopimelic acid. Peptidoglycan is synthesized via the insertion of rings (about 1100 in all) that grow from about 200 different locations around the cell (which translates to 250,000 copies of murein). The spacing of these PG growth rings is about 1.3 nm. In E. coli the peptidoglycan layer is very thin and may only be a monolayer.The inner membrane is composed of a lipid bilayer about 8 nm thick consisting of ~40% phospholipids and 60% protein. The phospholipids include phosphatidylethanolamine (75%), phosphatidylglycerol (18%), cardiolipin (5%) and phosphatidylyserine (2%). The lipid (fatty acid) chains are mostly C16 palmitic acid (43%), C16 palmitoleic acid (33%) and C18 vaccenic acid (24%), which form ester links to create the phospholipids. There are no sterols or steroids in the inner membrane of bacteria. Recall that mesophiles (like E. coli) tend to have fatty acids with shorter chains and more unsaturated fatty acids to maintain membrane fluidity. The inner membrane, in combination with the outer membrane (i.e. the cellular envelope) serves as an osmotic barrier, a nutrient-specific transporter, a lipid synthesizer, a peptidoglycan synthesizer, electron transport system, a place for assembly and secretion of envelope proteins, a mechanism for chromosomal segregation and a site for chemo-sensing. There exist a number of regions (~200 per cell) called Bayer's junctions where the inner (cytoplasmic) membrane contacts the outer membrane. It is not known what these junctions do.The periplasm, which is about 10 nm thick, occupies between 10 and 20 percent of the volume of an E. coli cell. It is the space between the inner and outer membrane and houses both proteins and the cell wall (peptidoglycan). It is thought to help in osmoregulation. The periplasm contains a number of proteins essential for nutrient binding, degradative enzymes (proteases, endonucleases), detoxifying enzymes (beta lactamase), peptidoglycan synthesis, cytochromes (electron transport) and chemotaxis or chemosensing proteins. The periplasm contains approximately 80,000 proteins.On the surface of the outer membrane can be found flagella. Flagella are rigid screw-like appendages (10-20 microns in length and approximately 25 nm wide) anchored to the outer membrane that rotate (clockwise or counterclockwise) in a propeller like fashion to facilitate bacterial movement. When flagella rotate counterclockwise this creates a pushing force that allows the bacterium to move (called a run). When flagella rotate clockwise the bacterium tumbles or twiddles. The change between a run and a twiddle is brought about by subtle changes to the structure of flagellar filament proteins (flagellin of FliC). Each flagellar filament is composed of 11 protofilaments wound in a bundled helix composed purely of flagellin. The orientation of these protofilaments (and the structure of the whole flagellar filament) is affected by small cumulative changes in the flagellin monomers brought on by chemo/osmotactic forces. Flagella are remarkably complex motor systems consisting of up to 50 different proteins which spontaneously self-assemble to form nano-scale rotors, stators and power (ATP) supplies. There are three components to a flagellum: the filament (composed of 30,000-40,000 flagellin monomers), the hook (which differ between G+ and G- cells) and the basal body (motor and power supply). A typical bacterium may have from 5-20 flagella. In E. coli, the flagellar are arranged in a peritrichous fashion (meaning they are scattered uniformly around the cell).Fimbrae or pili are thin appendages commonly found on G- cells. They are approximately 6.5 nm in diameter and between 200 and 2000 nm in length, meaning that they are smaller than flagella. A cell may have from 100-300 pili or fimbrae, meaning that they are much more numerous. The primary component in pili is the papA protein, a 16 kD protein which self-assembles into a helical repeat creating a hollow (1.5 nm) core of superstructured protein. Approximately 300 (short) to 3000 (long) papA proteins are needed to make a single pilus. The term fimbrae is used when referring to filaments responsible for surface attachment. The term pili refers to filaments used to mediate attachment to other bacteria (bacterial conjugation or DNA transfer).Also on the surface (i.e. outside the outer membrane) of E. coli are crystalline-like surface proteins which self-assemble to form S-layers. These S proteins form complex, rigid polyprotein networks that may be important for cellular protection and adherence.The cytoplasm is where all other major components of an E. coli cell reside. The cytoplasm contains the chromosomal DNA (about 2.3 genomes worth in an actively dividing cell), the RNA (tRNA, mRNA and rRNA), the ribosomes or polyribosomes (for protein synthesis), inclusion bodies or storage granules, essential ions (120 million), small organic molecules (18 million) and about 2.1 million proteins. The region of the cytoplasm containing the chromosome is called the nucleoid. It contains up to 2 chromosomal equivalents (in rapidly dividing cells). Each chromosome measures 1.55 mm in circumference (490 microns in diameter). The chromosome interacts with tens of thousands of nuclear proteins (HU, IHF, H-NS) with their being sufficient HU protein to bind the DNA every 200 bp (40,000+ monomers for each chromosome, HU dimerizes). These pseudo-histones condense the chromosome into a body (called a nucleiod) about 17 microns in diameter. The prokaryotic ribosome is composed of 2 subunits, the 30S and the 50S subunits. The 20S subunit has 21 proteins bound to the 16S (1700 nt) rRNA. The 50S subunit has 34 proteins bound to the 23S (3700 nt) and 5s (120 nt) rRNA. The storage granules or inclusions include metachromatic granules (which contain polyphosphate), glycogen granules (which store polyglucose) and lipid inclusions (which contain poly-B-hydroxybutyrate or PHB). Bacteria do not have a nucleus or other complex organelles (such as mitochondria, endoplasmic reticulum or chloroplasts) as found in eukaryotic cells. This simple interior structure makes bacterial cells much simpler to model and much easier to understand than eukaryotic cells. (From http://redpoll.pharmacy.ualberta.ca/CCDB/intron_new.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli 55989 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating Yes 585055 NC_011748.1 Bac0014617 Desulfurococcus amylolyticus 1221n Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus Desulfurococcus amylolyticus 490899 NC_011766.1 Bac0014618 Desulfatibacillum aliphaticivorans "Desulfatibacillum aliphaticivorans is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 32.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on stable conditions for survival and reproduction. ↵↵As an anaerobe, D. aliphaticivorans likely plays a role in the biogeochemical cycling of sulfur and carbon, particularly in environments devoid of oxygen, such as sediments or deep subsurface habitats. Its metabolic capabilities may involve the degradation of aliphatic compounds, aligning with its nomenclature and indicating a potential role in the bioremediation of aliphatic hydrocarbon contaminants. ↵↵The specific adaptations of D. aliphaticivorans to its anaerobic niche highlight the significance of anaerobic microorganisms in maintaining ecological balance and in the transformation of organic materials in their environments. Further research into the metabolic pathways and ecological roles of this organism could provide insights into its contributions to sulfur cycling and organic matter degradation in anaerobic ecosystems." Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatibacillaceae Desulfatibacillum Desulfatibacillum aliphaticivorans Gram-negative rod non-motile anaerobic 32 mesophilic non-spore-forming 218208 NC_011768.1 Bac0014619 Desulfitobacterium hafniense DCB-2 "Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) is an anaerobic dehalogenating, spore-forming, Gram-positive, bacterium isolated from municipal sludge. It grows by chlororespiration and dehalogenates a variety of aromatic and alkyl chlorinated compounds such as chlorinated phenols, chlorinated ethenes (widely used solvents) and there is suggestive evidence that it may also dechlorinate polychlorinated biphenyls (PCBs). D. hafniense utilizes fumarate, sulfite, and thiosulfate (but not thiousulfate) as terminal electron acceptors. (adapted from http://genome.jgi-psf.org/finished_microbes/desha/desha.home.html). (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium hafniense DCB-2 Negative Bacilli Yes 1 1 Anaerobic 37 Mesophilic Specialized Free living Chains- Pairs- Singles Sporulating No 272564 NC_011830.1 Bac0014620 Chloroflexus aggregans DSM 9485 "The phylum Chloroflexi is an early branching anoxygenic phototroph lineage within the Bacteria. Often grouped as the green non-sulfur bacterial (GNSB) branch of the 16S rRNA tree of life, this name is misleading, as not all members are green and some use sulfide. Its members are apparently metabolically diverse and widely distributed in nature. Although these organisms generally stain Gram-negative, a lipopolysaccharide-containing outer membrane is not present and the peptidoglycan is a variant that usually contains L-ornithine as the diamino acid. Most members of the Chloroflexi exhibit gliding motility. Members of the Family Chloroflexaceae are gliding filamentous, anoxygenic phototrophs. The ""green"" members of this family (Chloroflexus spp., Chloronema spp., Oscillochloris spp., and Chlorothrix spp.) synthesize bacteriochlorophylls a and c and use chlorosomes as their light harvesting antennae, while the ""red"" members of this family (Heliothrix and Roseiflexus spp.) only synthesize bacteriochlorophyll a and thus lack chlorosomes. The phylum Chloroflexi is heterogeneous with regard to metabolic properties, exhibiting two different pathways for carbon fixation (reductive pentose phosphate (Calvin cycle) and 3-hydroxy-propionate pathways), and their photosynthetic apparatus is a hybrid between that of green sulfur bacteria and purple bacteria.Chloroflexus aggregans MD-66, the type strain for this species, was originally isolated from Okukinu Meotobuchi hot spring in Tochigi Prefecture, Japan in 1995, where it grew as yellow streamers on a cyanobacterial mat. This hot spring contains 18 mM sodium chloride and 3 mM sodium bicarbonate as its major salts and trace amounts of sulfide. MD-66 grows anaerobically as a photoheterotroph and aerobically as a chemoheterotroph. The optimal growth temperature for C. aggregans is 55 degrees Celsius. It forms unbranched multicellular filaments of indefinite length, where the filaments are clearly septate. The cells have no flagella but are motile by gliding. Cultures grow by forming mat-like aggregates in liquid that have the appearance of green balls. Cell aggregates reform rapidly whenever a culture is shaken to produce a uniform suspension under growth conditions. Photosynthetic cultures are green to greenish brown. Bacteriochlorophylls a and c are present in phototrophically grown cells (under anaerobic conditions) and to a certain extent in chemotrophically grown cells under aerobic conditions. Chlorosomes are present, and the major quinone is menaquinone 10 (adapted from PubMed 7547286 and http://genome.jgi-psf.org/finished_microbes/chlgg/chlgg.home.html). (HAMAP: CHLAD)" Bacillati Chloroflexota Chloroflexia Chloroflexales Chloroflexaceae Chloroflexus Chloroflexus aggregans DSM 9485 Negative Filamentous Yes 1 1 Facultative Photosynthetic Thermophilic Specialized Free living Filaments No 326427 NC_011831.1 Bac0014621 Methanosphaerula palustris E1-9c "Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) is an anaerobic, methanogenic archaeon isolated from an organically rich wetland in central New York State. This organism is highly sensitive to the concentration of sulfur in the soil. This is the first cultured representative of a novel methanoarchaeal group important in wetlands and bioreactors and is relevant to bioenergy and carbon sequestration (adapted from http://genome.jgi-psf.org/metpa/metpa.home.html). (HAMAP: METPE)" Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanosphaerula Methanosphaerula palustris E1-9c Cocci No 1 1 Anaerobic 30 Mesophilic Specialized Free living Pairs No 521011 NC_011832.1 Bac0014622 Bifidobacterium animalis subsp. lactis AD011 "Bifidobacterium animalis subsp. lactis (strain AD011) is a probiotic bacterium isolated from the fecal sample of a healthy, breast-fed infant. It naturally inhabits the guts of most mammals, including humans, and shows a high level of immunomodulatory activity as well as a tolerance to gastric acid and bile acids. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis AD011 Positive Rod No 1 1 Anaerobe 39 Mesophilic Multiple Free living Homo sapiens Nonsporulating No 442563 NC_011835.1 Bac0014623 Mycobacterium leprae Br4923 "Both leprosy and tuberculosis, caused by Mycobacterium leprae and Mycobacterium tuberculosis respectively, have seriously plagued mankind for centuries. With the emergence of antibiotic resistant strains of tuberculosis, research into mycobacteria has become all the more important in combating these modern mutants of ancient pathogens.Both the genomes of Mycobacterium tuberculosis and Mycobacterium leprae have been sequenced with hopes of gaining further understanding of how to defeat the infamously successful pathogens. The genome of M. tuberculosis is 4,411,522 base pairs long with 3,924 predicted protein-coding sequences, and a relatively high G+C content of 65.6%. At 4.4 Mbp, M. tuberculosis is one of the largest known bacterial genomes, coming in just short of E. coli, and a distant third to Streptomyces coelicolor.The genome of Mycobacterium leprae is 3,268,203 base pairs long, with only 1,604 predicted protein-coding regions, and a G+C content of about 57.8%. Only 49.5% of the M. leprae genome contains open reading frames (protein-coding regions), the rest of the genome is comprised of pseudogenes, which are inactive reading frames with recognizable and functional counterparts in M. tuberculosis (27%), and regions that do not appear to be coding at all, and may be gene remnants mutated beyond recognition (23.5%). Of the genome of M. tuberculosis, 90.8% of the genome contains protein-coding sequences with only 6 pseudogenes, compared to the 1,116 pseudogenes on the M. leprae genome.Operating on the assumption that M. leprae was once approximately the size of other mycobacteria, it has significantly downsized and degraded to its current state. If all the genes on the M. leprae genome were active, it would have about 3,000 open reading frames, compared to the 4,000 proteins of M. tuberculosis. Total, over its evolutionary history, M. leprae has lost more than 2,000 genes.Mycobacteria are rod-shaped, Gram-positive aerobes, or facultative anaerobes. As deduced from its genome, M. tuberculosis has the potential to manufacture all of the machinery necessary to synthesize all of its essential vitamins, amino acids, and enzyme co-factors. On the other hand, the inability to culture M. leprae, suggests that it has lost many of its metabolic capabilities, and is now an obligate parasite, dependent on its host for most of its nutritional needs. This goes in accordance with its severely degenerated genome. M. tuberculosis has an unusual cell wall, with an additional layer beyond the peptodiglycan layer, which is rich in unusual lipids, glycolipids, and polysaccharides.It is thought that the more well-known infectious agents such as M. tuberculosis and M. leprae are evolved from a soil bacterium. More specifically, M. tuberculosis arose from a soil bacterium that evolved to infect cows, and then made the jump to humans about the time of animal domestication about 10,000 years ago. M. tuberculosis and M. leprae both grow remarkably slow for bacteria. M. tuberculosis doubles its population every 18-24 hours, while M. leprae doubles its population about every 14 days. This extremely long generation time probably contributes to the chronic nature of both diseases.Both leprosy and tuberculosis, caused by M. leprae and M. tuberculosis respectively, are considered chronic pathogens, causing diseases that takes months, sometimes years, to develop, and, without treatment, eventually result in a slow and excruciatingly painful death. Two of the oldest recognized pathogens, tuberculosis and leprosy have been plaguing mankind since the first stages of domestication some 10,000 years ago. Most mycobacteria do not cause disease, so M. tuberculosis and M. leprae are hardly typical of the genus, and are consequently called 'wayward sons of honorable parents.' In recent years, with the ushering in of the antibiotic age, when penicillin is used to treat everything, new, drug-resistant forms of these pathogens have begun to emerge allowing both diseases to become serious threats to humanity once again. In 1993 with rates of reported cases of tuberculosis on the rise, the World Health Organization declared it a global emergency and began to make efforts to heighten public awareness.In addition to an increase in people contracting tuberculosis, it has formed a deadly partnership with the AIDS virus. The two diseases feed off of each other. With the depleted immune system caused by AIDS comes increased susceptibility to tuberculosis, which in turn accelerates the progress of AIDS.Tuberculosis sets up camp in the lungs of its host, where it, for the most part, coexists with its host while lazily following its daily division routine, yet causing no outward symptoms, but rather just accumulating numbers in order to launch its assault on its unsuspecting host. Macrophages that normally ingest pathogens in order to destroy them, are made into a cozy home by the tubercle bacillus. Tubercolosis is transmitted from person to person through the air, and requires a six to twelve month regimen of at least two drugs to rid its host of the infection. Drug-resistant strains of the pathogen are mainly the result of patients not following directions in the taking of their medication, and thus do not kill off the disease entirely.Leprosy, popularly thought to be a disease of the past, has over 690,000 new cases reported annually, but the mode of transmission still remains a mystery. The infection is very slow to develop, taking anywhere from six months to ten years. Leprosy is a neurological disease, that mainly accumulates in the extremities, and inhabits macrophages through which it infects the Schwann cells of the peripheral nervous system. The lack of myelin produced by the infected Schwann cells leads to nerve damage, and sensory loss. There are two forms of leprosy, tuberculin and lepromatous. Lepromatous leprosy is the more contagious form, in which the body is unable to mount a resistance, and the bacterium freely multiplies in the skin, causing nodules to appear all over the body and face. It also infects the mucous membranes of the nose and throat, creating a rather disturbing physique. Tuberculin leprosy causes an immune defense in which the body's cells crowd around the invading organisms in the deep skin layers, which causes hair follicles, sweat glands, and nerve endings at the site to be destroyed. The skin then becomes dry and discolored and loses feeling. This most often affects the fingers and toes which are now fragile and injury prone, and often become mutilated and fall off. (From http://microbewiki.kenyon.edu/index.php/Mycobacterium) (MicrobeWiki: Mycobacterium)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium leprae Br4923 Positive Bacilli No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 561304 NC_011896.1 Bac0014624 Bacillus cereus Q1 "Bacilli are an extremely diverse group of bacteria that include both the causative agent of anthrax (Bacillus anthracis) as well as several species that synthesize important antibiotics. In addition to medical uses bacillus ,spores, due to their extreme tolerance to both heat and disinfectants, are used to test heat sterilization techniques and chemical disinfectants. Bacilli are also used in the detergent manufacturing industry for their ability to synthesize important enzymes.The sequence for the genome of Bacillus subtilis was completed in 1997 and was the first published sequence for a single-living bacterium. The genome is 4.2 Mega-base pairs long with with 4100 protein-coding regions. Bacillus subtilis has a plant growth promoting rhizobacterium shown to synthesize antifungal peptides. This ability has lead to the use of B. subtilis in biocontrol. B. subtilis has been shown to increase crop yields, although it has not been shown whether this is because it enhances plant growth, or inhibits disease growth.The genome of Bacillus anthracis is 5,227,293 base pairs long with 5,508 predicted protein-coding regions. The genome of B. anthracis is highly homologous with the genomes of both B. cereus and B. thuringiensis which have also been sequenced. The genome of B. anthracis has only 141 proteins that do not have a match in the protein set of B. cereus. Almost all of the virulence factors associated with anthrax are coded on its two plasmids and, surprisingly, almost all of these genes have homologues in B. cereus. This suggests that these virulence-enhancing genes are not specifically unique to Bacillus anthracis, but rather are part of the common array of genes of the B. cereus group (of which B. anthracis, B. cereus, and B. thuringiensis are all a part). B. anthracis also seems to have a decreased capacity for the extensive carbohydrate metabolism seen in B. subtilis, but possesses the genes for the cleavage of extracellular chitin and chitosan, which confirms its close relationship with the insect pathogen B. thuringiensis.Bacilli are rod-shaped, Gram-positive, sporulating, aerobes or facultative anaerobes. Most bacilli are saprophytes. Each bacterium creates only one spore, which is resistant to heat, cold, radiation, desiccation, and disinfectants. Bacilli exhibit an array of physiologic abilities that allow them to live in a wide range of habitats including many extreme habitats such as:desert sands, hot springs, and Arctic soils. Species in the genus Bacillus can be thermophilic, psychrophilic, acidophilic, alkaliphilic, halotolerant, or halophilic and are capable at growing at pH values, temperatures, and salt concentrations where few other organisms can survive.Due to the metabolic diversity in the genus Bacillus, bacilli are able to colonize a variety of habitats ranging from soil to insects, to humans. Bacillus thuringiensis parasitizes insects, and is commercially used form pest control. Although the most well known of the bacilli are the pathogenic species, most bacillus are saprophytes that make their living off of decaying matter. Still others, namely Bacillus subtilis, inhabit the rhizosphere, which is the interface between plant roots and the surrounding soil. The plants roots and associated biofilm can have a significant effect of on the chemistry of the soil, creating a unique environment.It has recently been shown that Bacillus subtilis engages in cannibalism. They use cannibalism as the easy way out in extreme cases. For survival in harsh environments, bacilli can form spores, but it is very costly to them energy-wise. An easier way, is for the bacteria to produce antibiotics that destroy neighboring bacilli, so that their contents may be digested allowing for the survival of a few of the bacteria. Essentially, what they are doing is snacking on their fellow bacilli, to tide them over, hoping for the environment to pick back up.Bacilli cause an array of infections from ear infections to meningitis, and urinary tract infections to septicemia. Mostly they occur as secondary infections in immunodeficient hosts or otherwise compromised hosts. They may exacerbate previous infection by producing tissue-damaging toxins or metabolites that interfere with treatment.The most well known disease caused by bacilli is anthrax, caused by Bacillus anthracis. Anthrax has a long history with humans. It has been suggested that the fifth and sixth plagues of Egypt recorded in the Bible (the fifth attacking animals, the sixth, known as the plague of the boils, attacking humans). In the 1600s anthrax was known as the ""Black bane"" and killed over 60,000 cows. Anthrax has more recently been brought to our attention as a possible method for bioterrorism. The recent anthrax mailings have brought acute public attention to the issue and sparked extensive research into the devastating disease.Anthrax is primarily a disease of herbivores who acquire the bacterium by eating plants with dust that contains anthrax spores. Humans contract the disease in three different ways. Cutaneous anthrax occurs when a human comes into contact with the spores form dust particles or a contaminated animal or carcass through a cut or abrasion. Cutaneous anthrax accounts for 95% of anthrax cases worldwide. During a 2-3 day incubation period the spores germinate, vegetative cells multiply, and a papule develops. Over the following days the papule ulcerates, dries and blackens to form the characteristic eschar. The process is painless unless infected with another pathogen.Gastrointestinal anthrax is contracted by ingesting contaminated meat. It occurs in the intestinal mucosa when the organisms invade the mucosa through a preexisting lesions. It progresses the same way as cutaneous anthrax. Although it is extremely rare in developed countries it has a very high mortality rate.Pulmonary anthrax is the result of inhaled spores that are transported to the lymph nodes where they germinate and multiply. They are then taken into the blood stream and lymphatics culminating in systemic arthritis which is usually fatal. (From http://microbewiki.kenyon.edu/index.php/Bacillus) (MicrobeWiki: Bacillus)" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Q1 Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Sporulating No 361100 NC_011969.1 Bac0014625 Streptococcus uberis 0140J "Gram-positive nonmotile coccus. Streptococcus uberis is commensal at many body sites and has been isolated from the skin, gut, tonsils and genital tract of asymptomatic cattle. It can infect the bovine mammary gland where it causes mastitis, an inflammatory disease. Infection with S. uberis is one of the major causes of bovine mastitis worldwide and the most common cause in the UK. S.uberis is often detected in feces and can also be isolated from the environment (pasture, bedding materials) populated by cattle. However the organism survives in the environment for less than 4 weeks. It has been placed within the pyogenic cluster, a large grouping containing the human pathogens S.pyogenes, the zoonotic S.agalactiae and a number of animal pathogens occupying diverse ecological niches including S.equi and S.canis.S. uberis strain 0140J represents a typical UK isolate in terms of its ancestry. It is among the most thoroughly characterized strains that is pathogenic for both the lactating and non-lactating bovine mammary gland, environments that are quite different. It encodes a variety of metabolic options useful for benefiting from its various habitats; some of them have probably been acquired by horizontal gene transfer. It encodes a lower number of mobile genetic elements than other pyogenic streptococci (adapted from PubMed 19175920). (HAMAP: STRU0)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus uberis 0140J Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Multiple Free living Bovine Chains - Pairs Nonsporulating 218495 NC_012004.1 Bac0014626 Anaplasma marginale str. Florida "Anaplasma marginale is the most prevalent tick-borne pathogen of cattle. It is transmitted by ixodid ticks. Symptoms of acute disease are anemia, weight loss, and often death. A.marginale establishes life-long persistent infection in animals that survive disease. These animals are clinically healthy but serve as reservoirs for transmission of the pathogen. Sequencing has revealed a small genome size due to reductive evolution, and it is related to several other intracellular pathogens, including those in the genera Ehrlichia, and Rickettsia. The Florida strain was originally isolated from a pool of blood samples collected from cattle in 1955. It is not able to be transmitted by the tick Dermacentor andersoni. It has been passed continuously since isolation. Comparisons between 2 fully sequenced genomes (strains St. Maries and Florida) and 3 unfinished genomes (two tick transmissible strains; Virginia and Puerto Rico, and one D.andersoni non-transmissible strain, Mississippi) showed that A. marginale has a closed-core genome with few highly plastic regions, which include the msp2 and msp3 genes, as well as the aaap locus. This means that few to no new genes are expected to be found when new genomes are sequenced. It has however a medium level of single-nucleotide polymorphisms (SNPs), having at least 20,028 variable sites found among these five genomes which is approximately 1.67% of the estimated size of the pan-genome. (HAMAP: ANAMF)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma marginale Florida Negative Cocci No 1 2 Aerobic Mesophilic HostAssociated Symbiotic Cow- Homo sapiens Singles No 320483 NC_012026.1 Bac0014627 Nautilia profundicola AmH "Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) is a strictly anaerobic, moderately thermophilic, hydrogen-oxidizing, sulfur-reducing chemoautotroph bacterium isolated from the biomass of an Alvinella pompejana episymbiont community along the East Pacific Rise Axial Caldera. It is the first published Epsilonproteobacterium to be isolated from deep-sea hydrothermal vents. It grows at 30-55 degrees Celsius, pH 6.0-9.0 and 2-5 % (w/v) NaCl. Chemolithoautotrophic growth occurs with molecular hydrogen or formate as the electron donor and elemental sulfur as the electron acceptor, producing hydrogen sulfide. Heterotrophic and mixotrophic growth occurs with formate as a source of carbon. It uses the reductive TCA cycle for carbon fixation. It possesses a variety of characteristics typical of organisms living in deep-sea hydrothermal vents including a diverse suite of hydrogenases coupled to a relatively simple electron transport chain, numerous stress response systems, a novel predicted nitrate assimilation pathway with hydroxylamine as a key intermediate, and a gene (rgy) encoding the hallmark protein for hyperthermophilic growth, reverse gyrase. It is a model organism of the anaerobic autotrophic Epsilonproteobacteria at hydrothermal vents. (adapted from PMID: 19197347). (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Nautilia Nautilia profundicola AmH Negative Bacilli Yes 1 2 Anaerobic 45 Chemoautotroph Mesophilic Multiple Free living Alvinella pompejana non-spore-forming No 598659 NC_012115.1 Bac0014628 Salmonella enterica subsp. enterica serovar Paratyphi C str. "Salmonella enterica subsp. enterica serovar Paratyphi C is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This microbe is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. Its optimal growth temperature is around 37.0°C, which corresponds to the average human body temperature, suggesting a close association with host organisms. ↵↵S. enterica Paratyphi C is microaerophilic, meaning it requires reduced levels of oxygen for optimal growth, a trait that may influence its metabolic processes and interactions within host environments. The habitat of this organism is primarily host-associated, which aligns with its pathogenic potential, although specific pathogenic properties of this serovar are not detailed here.↵↵In an ecological context, the microaerophilic nature of S. enterica Paratyphi C may allow it to thrive in specialized niches within the host, such as the gastrointestinal tract, where oxygen levels are lower than in the surrounding environment. This adaptation may enhance its survival and competitive advantage in host-associated habitats, reflecting the intricate relationships between microbial traits and ecological settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NC_012124.1 Bac0014629 Borreliella finlandensis Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella [Borrelia] finlandensis 498741 NC_012230.1 Bac0014630 Wolbachia sp. wRi "Wolbachia strain TRS is the obligate endosymbiont of the nematode Brugia malayi and is required for fertility and survival of the worm. Brugia malayi as well as Wuchereria bancrofti cause lymphatic filariasis, a disease that affects 120 million people, a third of whom show disfigurement. In nematodes, Wolbachia is located in the lateral chords in both sexes and are also localized in oocytes. The bacterium seems to be present in 100% of individuals within a population, when a species contains them. As they appear to be essential to the worm survival, they represent potential therapeutic targets for filariasis control. Some antibiotics show inhibitory effects on parasitic nematode development and fertility. No antibiotic effects are observed in nematodes that do not harbor Wolbachia. Wolbachia play a role in the host immunological response to filarial parasite invasion. Infection by filarial parasites results in the production of antibodies directed toward parasite- and Wolbachia-specific antigens.(From http://www.expasy.org/sprot/hamap/WOLTR.html) (BacMap)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia sp. wRi wRi Negative No 1 HostAssociated No 66084 NC_012416.1 Bac0014631 Brucella melitensis ATCC 23457 "The genus Brucella is comprised mostly of mammalian pathogens, which due to their low infectious does, aerosol transmission and treatment difficulty are classified as potential bioterrorism agents. Brucellosis is a major infectious disease for both human and animals. Several Brucella species (B.abortus, B.melitensis and B.suis) have been isolated from many different animals. All three Brucella species cause a severe human disease characterized in its acute phase by undulant fever and in its chronic phase by damage of different organs. Brucellosis is a major problem in the Mediterranean region and parts of Asia, Africa and Latin America. When the infection is localized to the brain or the heart, it can result in a fatal meningitidis or fatal endocarditis, respectively. Brucella melitensis is a facultative intracellular bacterial pathogen that causes abortion in goats and sheep and undulant fever in humans. The disease is transmitted to human by consumption of non-pasteurized milk and milk products or by direct contact with infected animals and carcasses. Although Brucellae contain a large set of flagellar genes, they display a species-specific gene inactivation and consequently are nonmotile. Strain M28 is a virulent strain isolated from sheep in the 1950s. It is the parent of vaccine strain M5-90 (biovar1) which was isolated after M28 was serially passaged through chickens, treated with acriflavine, and passaged for 90 generations in chicken embryo fibroblasts. Comparison of the 2 sequences will give information on vaccine protection (adapted from PMID 21478357). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella melitensis ATCC 23457 Negative Cocci No 1 2 Facultative aerobe 37 Mesophilic HostAssociated Free living Homo sapiens Chains - Pairs - Singles Nonsporulating Yes 546272 NC_012442.1 Bac0014632 Streptococcus pneumoniae JJA "Streptococci are a diverse genus, infecting a barrage of different animals, including humans, with diseases ranging from strep throat to necrotizing fasciitis. They have come to public attention recently as antibiotic-resistant strains have started appearing and causing epidemics. In an effort to battle the evolution of these clever pathogens, researchers have sequenced the genomes of 11 different strains in 4 different species of Streptococcus.Streptococci are nonmotile, Gram-positive, nonsporeforming bacteria, that live in pairs or chains of varying length. They are characteristically round or ovoid in shape. Most Streptococci are facultative anaerobes, although some are obligate anaerobes. They usually require a complex culture medium in order to grow. Many streptococci imitate aspects of their host in order to escape detection. The capsule of Streptococcus pyogenes is chemically similar to that of it's host's connective tissue, and therefore, is nonantigenic, and it's cytoplasmic membrane has antigens similar to human cardiac skeletal and smooth muscle.Streptococci are a part of normal animal flora. Although some can cause diseases. The progression from latency to virulence is not well-understood, but the sequencing of the Streptococcus genomes is aiding researchers in understanding better the mechanisms of streptococci.Infections by Streptococci are separated into several categories, depending on the composition of their cell walls. Groups A and B are the most common and devastating human pathogens. Group A Streptococcus bacteria causes disease ranging from streptococcal sore throat (strep throat) to necrotizing fasciitis (flesh-eating disease). They can also cause scarlet fever, rheumatic fever, postpartum fever, and streptococcal toxic shock syndrome. S. pyogenes can be counted among their numbers as one of the major pathogens in group A streptococci. Necrotizing fasciitis is one of the most deadly strep infections, due to its rapid progression. It is an infection caused by a deadly strain of group A strep that attacks the deep layers of tissue (fascia). The strain is normally not so aggressive, and it is thought that its sudden virulence is triggered by lateral gene transfer by a bacteriophage.Streptococcal toxic shock syndrome is another serious strep infection that progresses very rapidly. It causes a dangerous drop in blood pressure, damage to the kidneys, liver, and lungs, and eventually shock. Due to its rapid progression, the damage is usually done before the disease can even be diagnosed, let alone treated.Group B streptococci cause life-threatening diseases in newborns, pregnant women, the elderly, and adults with compromised immune systems. Group B strep infections are different from other strep infections, in that the individual can be colonized by the bacteria before any symptoms are obvious. This means that people can carry the bacteria in their bodies but are not infected, and do not show any symptoms. Group B strep can be carried in the gastrointestinal tract, genital tract, or urinary tract, and only become dangerous when they invade the bloodstream.Among group B infections is pneumonia. Pneumonia can be caused by a barrage of different things including viruses and fungi, but is most commonly caused by Streptococcus pneumoniae (mentioned above in the genome section) also called pneumococcus, which is the only type of pneumonia for which there is a vaccine. S. pneumoniae are often present in healthy throats and only develop into a serious infection when the host's defenses are depleted due to such factors as old age, illness (i.e. AIDS), or malnutrition. Like necrotizing fasciitis and toxic shock syndrome, bacterial pneumonia progresses vary rapidly with a sudden onset of high fever. More seriously, the infection can become invasive and manifest itself as meningitis (an infection of the cerebrospinal fluid).Streptococci have been the focus of a lot of medical research because of newly emerging, antibiotic-resistant strains. Research into new antibiotics to treat the diseases and new vaccines to prevent them has escalated in recent years. And information on streptococci has increased with the sequencing of the genome of four different species of streptococci.(From http://microbewiki.kenyon.edu/index.php/Streptococcus) (MicrobeWiki: Streptococcus)" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae JJA Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Homo sapiens Chains - Pairs Nonsporulating Yes 488222 NC_012466.1 Bac0014633 Brevibacillus brevis NBRC 100599 "Brevibacillus brevis NBRC 100599, formerly known as Bacillus brevis 47, is a strictly aerobic, Gram-positive, spore-forming soil bacterium. It has a characteristic three-layered cell wall composed of a peptidoglycan-layer and the outer two S-layers, each consisting of single protein species, and is known to secrete large amounts of proteins into the culture media. The proteins secreted by this strain are mainly derived from the outer two layers of the cell wall, which are shed into the medium with the progress of cell growth. In secretes little protease, which enables easy recovery of the secreted proteins with minimal degradation, and thus it has been used as a good host for production of heterologous proteins. The genome lacks several sugar metabolism genes found in Bacillus subtilis, showing that B. brevis is unable to utilize L-arabinose, D-mannose and D-xylose. The abundance of genes involved in response to environmental stress, such as those encoding sigma factors and chemotaxis receptors, suggests that this bacterium has a great capacity of adaptation to diverse environments (adapted from http://www.bio.nite.go.jp/dogan/About?GENOME_ID=bbr_G1). (HAMAP: BREBN)" Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus brevis NBRC 100599 Positive Bacilli Yes 1 1 Aerobic Mesophilic Terrestrial Free living Sporulating No 358681 NC_012491.1 Bac0014634 Laribacter hongkongensis HLHK9 "Laribacter hongkongensis is a facultatively anaerobic, gram-negative bacterium first isolated from the blood and empyema pus of a 36 year-old patient suffering from alcoholic cirrhosis in Hong Kong. Subsequently, it has been found in patients with gastroenteritis, freshwater fish and drinking water reservoirs. It cannot survive in marine fish. A multi-center study has demonstrated its association with community-acquired gastroenteritis/diarrhea. It is motile, seagull or S-shaped, asaccharolytic, and urease-positive. Genome and proteome analysis of L. hongkongensis revealed novel mechanisms for adaptations to survival at different temperatures and habitats (adapted from PubMed 19283063). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Aquaspirillaceae Laribacter Laribacter hongkongensis HLHK9 Negative Bacilli No 1 2 Anaerobic Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 557598 NC_012559.1 Bac0014635 Clostridium botulinum Ba4 str. 657 "Clostridium botulinum produces botulinum neurotoxin, one of deadliest toxins known. It inhibits acetylcholine release in neuromuscular junctions, causing paralysis by inhibiting muscle contraction. In most cases the affected person dies of asphyxiation or heart failure. Strains of C. botulinum are physiologically heterogeneous, and four distinct phenotypic groups (I to IV) are recognized. These four metabolically distinct groups do not, however, necessarily correlate with the serological specificities of the botulinum neurotoxin produced, which are classified into 7 serotypes, A-F. The type A toxin is used in minute doses to treat both painful muscle spasms and as a cosmetic treatment to temporarily remove frown lines between eyebrows. Strain Hall, ATCC 3502, is a representative of the Group I (proteolytic) botulinum toxin producing bacteria. Group I strains produce one or two toxins of type A, B or F; strain Hall produces type A1 neurotoxin. Food-borne, infant and wound botulism can all be caused by Group I strains. Strain Hall, the most widely studied of the C.botulinum strains, has been found to have an active chitinolytic system, enabling it to colonize environments where chitin-containing organism such as fungi, insects and crustaceans are abundant. Additionally it produces several extracellular proteases, presumably helping it to soften and destroy rotting or decaying tissues to support its saprophytic lifestyle. Two representatives of this strain have been sequenced, one of which contains a plasmid that encodes a bacteriocin boticin-like synthetic and transport system which may enable the bacteria to compete against other microbes. (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum str. 657 Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Pairs - Singles - Chains Sporulating Yes 515621 NC_012658.1 Bac0014636 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum). Candidatus Hamiltonella defensa 5AT was isolated from the pea aphid Acyrthosiphon pisum and will be used for comparative analysis with other insect symbionts. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens 5AT (Acyrthosiphon pisum) Negative Rod Mesophilic HostAssociated Symbiotic Acyrthosiphon pisum 572265 NC_012752.1 Bac0014637 Solidesulfovibrio magneticus RS-1 "Solidesulfovibrio magneticus RS-1 is a Gram-negative, magnetotactic bacterium characterized by its ability to orient and migrate along magnetic fields. This unique trait is attributed to the presence of magnetosomes, which are intracellular organelles containing magnetic iron minerals. The bacterium exhibits a distinctive rod-shaped morphology, contributing to its motility in aquatic environments. ↵↵As a member of the sulfate-reducing bacteria, Solidesulfovibrio magneticus RS-1 plays a significant role in biogeochemical cycles, particularly in sulfur and iron transformations. This microbe utilizes sulfate as a terminal electron acceptor during anaerobic respiration, thereby contributing to the reduction of sulfate to sulfide. The ecological implications of this metabolic pathway are noteworthy, as it influences nutrient cycling and can impact the overall health of sedimentary ecosystems.↵↵Furthermore, the magnetotactic behavior of Solidesulfovibrio magneticus RS-1 suggests its potential role in sediment stratification and geomicrobiology. By aligning with geomagnetic fields, this bacterium may enhance its access to nutrients and optimize its habitat within sediment layers. Overall, the unique combination of magnetotaxis and sulfate-reducing capabilities positions Solidesulfovibrio magneticus RS-1 as an important player in both microbial ecology and environmental biogeochemistry." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio magneticus negative 573370 NC_012795.1 Bac0014638 Mesomycoplasma conjunctivae Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma conjunctivae lung 45361 NC_012806.1 Bac0014639 Rhizobium leguminosarum bv. trifolii WSM1325 "Rhizobium leguminosarum is a widely studied alpha-proteobacterial N2-fixing legume symbiont of legumes. It has three biovars - viciae, trifolii, phaseoli - that differ in their host specificity. The host-specificity genes are carried on large plasmids that also carry the genes for nitrogen fixation. All strains of R. leguminosarum have several large plasmids, but the number and sizes of plasmids varies among strains. This large number of plasmids distinguishes R. leguminosarum from the other rhizobia for which complete genome sequences have been determined.Strain WSM1325 was isolated in 1993 from a nodule recovered from the roots of an annual clover plant growing near Livadi beach on the Greek Cyclades island of Serifos. It is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants. However, WSM1325 sometimes nodulates and never fixes nitrogen with American and African perennial clovers, such as those nodulated by WSM2304. It is important to understand this incompatibility (adapted from 10.4056/sigs.852027). (HAMAP: RHILS)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum WSM1325 Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Pisum sativum Singles Nonsporulating No 395491 NC_012848.1 Bac0014640 Musicola paradisiaca Ech703 "Musicola paradisiaca Ech703 is a Gram-negative bacterium characterized by its distinct cellular structure and potential metabolic capabilities. This microbe is notable for its unique morphological features, which are indicative of its classification within the Gram-negative group, typically associated with a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides. ↵↵While specific physiological traits and ecological roles of Musicola paradisiaca Ech703 have not been detailed, Gram-negative bacteria often exhibit diverse metabolic pathways, which may allow them to thrive in various environments. These bacteria can engage in important biochemical processes, including nutrient cycling and interactions with other microorganisms, which can have implications in their respective habitats.↵↵As a member of the Gram-negative group, Musicola paradisiaca Ech703 may also possess mechanisms for resisting certain antibiotics and environmental stresses, a common trait among this classification. This resilience may enable the microbe to occupy ecological niches where competition with other microorganisms is intense. ↵↵Further research into Musicola paradisiaca Ech703 could reveal insights into its potential roles in biogeochemical cycles or its interactions with other microbial communities. Understanding the functional capabilities of this bacterium could enhance our grasp of microbial ecology and the dynamics of microbial communities in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Musicola Musicola paradisiaca negative 579405 NC_012880.1 Bac0014641 Maridesulfovibrio salexigens DSM 2638 "Maridesulfovibrio salexigens DSM 2638 is a Gram-negative, sulfate-reducing bacterium that belongs to the family Desulfovibrionaceae. This microbe is characterized by its ability to utilize sulfate as an electron acceptor, which allows it to thrive in environments rich in sulfates. Its metabolic capabilities enable M. salexigens to play a significant role in biogeochemical cycles, particularly in sulfur cycling, which is essential for maintaining ecosystem health.↵↵The cells of M. salexigens are typically rod-shaped, a trait that can influence its motility and colonization abilities in various substrates. The organism's unique metabolic pathways not only facilitate the reduction of sulfate but also contribute to the production of hydrogen sulfide, a compound that can influence the chemical composition of its surrounding environment.↵↵M. salexigens has been isolated from hypersaline environments, indicating its potential for adaptation to extreme saline conditions. This adaptation suggests that the bacterium might possess specialized mechanisms to maintain cellular integrity and function in high-salinity habitats, further highlighting its ecological niche.↵↵Overall, the unique combination of sulfate-reducing capabilities and adaptation to hypersaline conditions positions Maridesulfovibrio salexigens DSM 2638 as a key player in the microbial communities of saline ecosystems, where it may significantly impact sulfur cycling and biogeochemical processes." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio salexigens negative 526222 NC_012881.1 Bac0014642 Dickeya chrysanthemi Ech1591 "Dickeya chrysanthemi strain Ech1591 is a Gram-negative bacterium that exhibits aerobic metabolic capabilities. As a member of the family Pectobacteriaceae, it is characterized by its rod-shaped morphology and its ability to thrive in the presence of oxygen. The Gram-negative nature of D. chrysanthemi Ech1591 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a typical feature that often contributes to the organism's resilience in various environments.↵↵This bacterium's aerobic requirement indicates that it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. While the specific ecological roles or pathogenicity of D. chrysanthemi Ech1591 are not detailed in the available data, its classification within a genus known for causing soft rot in plants suggests that it may have implications in agricultural contexts.↵↵Understanding the traits of D. chrysanthemi Ech1591 can provide insights into its potential interactions within microbial communities, particularly in environments where oxygen availability is a key factor. This bacterium's aerobic nature may allow it to outcompete anaerobic microbes in oxygen-rich habitats, highlighting the importance of oxygen as a critical determinant in microbial ecology and dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya chrysanthemi negative aerobic 561229 NC_012912.1 Bac0014643 Pectobacterium carotovorum subsp. carotovorum PC1 Pectobacterium carotovorum subsp. carotovorum (strain ATCC 4698 / IFO 3333 / NCTC 2665) is a rod shaped plant pathogen Gram-negative bacterium. It is the causative agent of soft rot disease of potato tubers. (EBI Integr8) Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium carotovorum PC1 Negative Bacilli Yes 1 2 Facultative Mesophilic HostAssociated Free living Nonsporulating 561230 NC_012917.1 Bac0014644 Methylovorus glucosotrophus SIP3-4 "Methylovorus glucosotrophus SIP3-4 is a Gram-negative, rod-shaped bacterium that exhibits methylotrophic capabilities, utilizing methanol and other one-carbon compounds as its primary energy sources. This nonsporulating microbe thrives in aerobic aquatic environments, where it plays a role in the biogeochemical cycling of carbon. ↵↵The methylotrophic metabolism of M. glucosotrophus SIP3-4 enables it to contribute to the degradation of methanol and possibly other methylated compounds, which can be prevalent in certain aquatic ecosystems due to natural processes or anthropogenic activities. Its ability to utilize these compounds not only underscores the ecological importance of this organism in nutrient cycling but also highlights its potential role in bioremediation strategies aimed at mitigating pollution in aquatic habitats.↵↵Understanding the physiology and metabolic pathways of M. glucosotrophus SIP3-4 enhances our knowledge of microbial interactions in aquatic ecosystems and may provide insights into the functional diversity of methylotrophic bacteria. This knowledge can be pivotal when considering the role of such organisms in maintaining ecological balance and the health of aquatic environments." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylovorus Methylovorus glucosotrophus Negative Rod No Aerobic Methylotroph Mesophilic Aquatic Free living Nonsporulating 582744 NC_012970.1 Bac0014645 Helicobacter pylori B38 "Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori B38 Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 592205 NC_012973.1 Bac0014646 Hirschia baltica ATCC 49814 "Hirschia baltica is a yellow-pigmented, hyphal, budding bacteria. Strain IFAM 1418 (ATCC 49814) was isolated from the top 5cm of water in Kiel Fjord on the Baltic Sea, Germany in October 1982 and is the type strain for this species. It prefers brackish water and grows optimally between 22 and 29 degrees Celsius. Cells (without hyphae) are 0.5 to 1.0 by 0.5 to 6.0 um and are rod shaped, elliptical, or ovoid. The hyphae have a diameter of about 0.2 um. It can use a number of sugars, organic and amino acids as carbon sources including glucose, acetate, lactate, pyruvate, alanine, arginine, asparagine, aspartic acid, glutamic acid, glutamine, isoleucine, proline, and gluconate. It cannot grow on lactose, xylose, raffinose, ribose, ethanol, glycerol, mannitol, methanol, methylammonium chloride, formamide, citrate, fumarate, malate, glycine, histidine, lysine, or valine among others. Nitrogen sources are ammonia, glutamic acid, nitrate, and urea, and it can produce ammonia from peptone (adapted from PMID 2275859). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hirschia Hirschia baltica ATCC 49814 Gram-negative Bacilli No 1 2 Aerobic 25 Chemoheterotroph Mesophilic Aquatic Free living Nonsporulating No 582402 NC_012982.1 Bac0014647 Methylorubrum extorquens DM4 "Methylorubrum extorquens DM4 is a Gram-negative, rod-shaped bacterium that exhibits a unique metabolic capability as a methylotroph, utilizing methanol and other one-carbon compounds as its primary energy source. This organism can be found in diverse habitats, indicating its adaptability to various environmental conditions. M. extorquens DM4 typically exists in pairs or as single cells, which may influence its interactions within microbial communities.↵↵The optimal growth temperature for M. extorquens DM4 is 25.0°C, suggesting a preference for moderate environmental temperatures, typical of many soil and aquatic microorganisms. As a facultative aerobe, this bacterium can thrive in both the presence and absence of oxygen, allowing it to exploit different niches and resources in its habitat. This metabolic versatility not only enhances its survival under fluctuating environmental conditions but may also play a role in biogeochemical cycles, particularly in carbon cycling.↵↵The ability of M. extorquens DM4 to utilize methanol as an energy source positions it as a potential player in biotechnological applications, such as bioremediation and sustainable biofuel production. Furthermore, its presence in multiple habitats underscores the ecological significance of methylotrophic bacteria in carbon fixation and their potential contributions to ecosystem dynamics in varying environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum extorquens Negative Rod Yes 1 2 Facultative aerobe 25 Methylotroph Mesophilic Multiple Free living Pairs - Singles 661410 NC_012989.1 Bac0014648 Pedobacter heparinus DSM 2366 "Pedobacter heparinus DSM 2366, (also known as ATCC 13125, IFO 12017 and LMG 10399 among others) is a heparinase producing bacterium isolated from dry soil which prefers carbohydrates and sugars as carbon sources. It grows as Gram-negative rods ranging in size from 0.7 to 6 um long. It is obligately aerobic, does not sporulate and has gliding motility. It is interesting due to its ability to degrade acidic sulfated mucoheteropolysaccharides, like heparin and chondroitin that are formed in various animal tissues. It contains menaquinone MK-7 (adapted from PMID 9542086 and http://standardsingenomics.org/index.php/sigen/article/view/sigs22138/sig22138.pdf). (EBI Integr8)" Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter heparinus DSM 2366 Negative Bacilli No 1 2 Aerobic Chemoorganotroph Mesophilic Terrestrial Free living Nonsporulating No 485917 NC_013061.1 Bac0014649 Flavobacteriaceae bacterium 3519-10 "Flavobacteriaceae bacterium (strain 3519-10) was isolated from glacial ice at a depth of 3519 m, just above the accreted ice from Subglacial Lake Vostok, the largest subglacial lake in Antarctica. Ice at this depth is near the bottom of a layer of deformed glacial ice and is more than 420,000 years old. It is less than 20 m above the layer of accretion ice originating from Subglacial Lake Vostok and has a temperature of approximately -8 degrees Celsius. This bacterium produces a 54 kDa ice-binding protein that is similar to ice-binding proteins previously found in sea ice diatoms, a snow mold, and a sea ice bacterium. The protein has the ability to inhibit the recrystallization of ice, a phenotype that has clear advantages for survival in ice (adapted from PMID 18622572). (EBI Integr8)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium 3519-10 3519 2 No 531844 NC_013062.1 Bac0014650 Candidatus Sulcia muelleri SMDSEM Candidatus Sulcia muelleri SMDSEM.This strain is being sequenced for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Candidatus Karelsulcia Candidatus Karelsulcia muelleri SMDSEM Negative Mesophilic Specialized Symbiotic 595499 NC_013123.1 Bac0014651 Saccharomonospora viridis DSM 43017 "Saccharomonospora viridis have been isolated from hot composts in Europe and USA, and also from soil in Japan. The type strain was isolated from an Irish peat bog before 1963 at a depth of about 2.5 m. Although it is an actinobacteria S.viridis has the unusual phenotype of being a Gram-negative organism, while showing the typical mycelium morphology of Saccharomonospora. Spores of S. viridis are readily dispersed in air, and the prolonged exposure to them correlates with acute respiratory distress (farmer's lung disease). The optimal temperature for growth is 55 degrees Celsius, but 45 degrees Celsius for aerial mycelium formation and pigment production; it is aerobic. It can incompletely metabolize pentachlorophenol, contributing to degradation of PCP in situ. It produces the antibiotic thermoviridin which acts mostly against Gram-positive bacteria. It contains the menaquinones MK-9(H4) and MK-8(H4) (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.20263/76). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora viridis DSM 43017 Positive Yes 1 2 Aerobic 37 Thermophilic Multiple Free living Homo sapiens Sporulating Yes 471857 NC_013159.1 Bac0014652 Capnocytophaga ochracea DSM 7271 "Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) is a capnophilic (CO2-requiring), gliding Gram-negative bacterium, originally isolated from the human oral cavity. Cells are pigmented and the name ""ochracea"" is derived from the yellow color exhibited by harvested cell mass. C.ochracea grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. It is known as a capnophilic organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%) C. ochracea is most often found in association with animal and human hosts. In general, it is a normal inhabitant of the human mouth and other non-oral sites. C. ochracea is associated with juvenile and adult periodontitis and can also be an opportunistic pathogens. It may cause severe infections in immunocompromised as well as in immunocompetent patients. Among these are endocarditis, endometritis, osteomyelitis, abscesses, peritonitis, and keratitis. C. ochracea is usually susceptible to a number of antibiotics, however, resistance is increasing in this species. Furthermore, C. ochracea is known to possess an immunosuppressive factor. All strains of C. ochracea are capable of fermenting glucose, sucrose, maltose and mannose, whereas most strains ferment amygdalin, fructose, galactose, lactose and raffinose. The optimal growth temperature is 37 degrees Celsius. Nitrate is reduced to nitrite, and dextran, glycogen, starch and aesculin are hydrolysed by most strains. Indole is not produced. Acetic and succinic acid are the main metabolic end products of fermentation. (Adapted from PMID 21304645). (HAMAP: CAPOD)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea DSM 7271 Negative Spirilla No 1 2 Microaerophilic 35 Chemoorganotroph Mesophilic Multiple Free living Homo sapiens Chains - Singles Nonsporulating Yes 521097 NC_013162.1 Bac0014653 Leptotrichia buccalis C-1013-b "Species of Leptotrichia are large, fusiform, non-motile, non-sporulating rods, which often populate the human oral flora as well as the female genitourinary tract and the intestinal tract. Recognized in the 1800s, it was among the first bacteria to be described and drawn in the letters of Antoni van Leeuwenhoek. L. buccalis is anaerobic to aerotolerant, and saccharolytic. Older cells of strain C-1013-b are Gram-negative, but younger cells that have been in culture for less than six hours are Gram-positive while on first isolation, it is anaerobic but becomes aerotolerant upon transfer and grows in the presence of air and CO(2) (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs1854/74). (HAMAP: LEPBD)" Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis DSM 1135 Negative Bacilli No 1 2 Anaerobic Mesophilic HostAssociated Free living Homo sapiens Chains- Filaments Nonsporulating No? 523794 NC_013192.1 Bac0014654 Robiginitalea biformata HTCC2501 "Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) is an aerobic, obligatory chemoheterotrophic Gram-negative bacterium with carotenoid pigments and dimorphic growth phases. It was isolated from the Sargasso Sea (Atlantic Ocean) by dilution-to-extinction culturing. As the species name implies, the morphology of R. biformata varies from straight rods (in exponential phase) to coccoid cells (in stationary phase). R. biformata is short to moderately long rods, and forms colonies with a characteristic rusty red pigment. It contains genes for carotenoid biosynthesis but no genes for phototrophy, confirming the obligately chemoheterotrophic metabolism. R. biformata has also a set of genes for a putative carbon monoxide dehydrogenase and enzymes required to degrade high-molecular-weight compounds, including protease, sulfatase, pectinase, chitinase, _-amylases, and a predicted glycogen debranching enzyme. It cannot degrade crystalline cellulose. The Flavobacteriaceae, and particularly R. biformata, may be promising sources of diverse novel monocyclic carotenoids, such as saproxanthin and myxol which are rarely found in nature but were demonstrated previously to show significant antioxidative activities against lipid peroxidation and neuroprotective effects against L-glutamate toxicity. R. biformata may provide a model for studying the biosynthesis of carotenoid congeners produced by marine Flavobacteriaceae and related species. (Adapted from PMID: 19767438). (EBI Integr8)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Robiginitalea Robiginitalea biformata HTCC2501 Negative Bacilli No 1 2 Aerobic 30 Chemoheterotroph Mesophilic Aquatic Free living non-spore-forming No 313596 NC_013222.1 Bac0014655 Candidatus Methylomirabilis oxyfera Methylomirabilota (SeqCode) Methylomirabilia (SeqCode) Methylomirabilales (SeqCode) Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis oxygeniifera 671143 NC_013260.1 Bac0014656 Cronobacter turicensis z3032 "Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) is Gram-negative bacterium. Turicensis is the Latin name of Zurich, as the type strain originates from Zurich, Switzerland. It is an opportunistic pathogen that can cause infections such as necrotizing enterocolitis (or coloenteritis), bacteraemia, meningitis and brain abscess/lesions with fatal mortality rates ranging from 40 to 80% . Neonates and infants under two months, born prematurely or with low birth weight are at highest risk for infection most commonly by Cronobacter sp. contaminated powdered infant milk formulas. Notably, Cronobacter sp. is often found in food preparation environments (i.e. chocolate, pasta, cereal and dairy production areas). However, the natural reservoir of this opportunistic pathogen remains unknown. Recently, it has been shown that some strains are able to adhere to human epithelial and endothelial cells. Moreover, Cronobacter sp. is capable of infecting and persisting in human macrophages. It is expected that bacterial virulence factors such as toxins, iron chelators, secretion systems and immune system evasion mechanisms are involved in the infection process. (Adaptated from PMID: 19609963). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter turicensis sp. nov. Negative Bacilli Yes 1 2 Facultative HostAssociated Homo sapiens Yes 693216 NC_013282.2 Bac0014657 Paenibacillus sp. Y412MC10 "Paenibacillus sp. strain JDR-2 is an aggressively xylanolytic bacterium isolated from decaying sweet gum wood. It is a free-living, aerobic, mesophilic, rod-shaped, sporulating bacterium found in association with rotting wood. Its extracellular xylanase efficiently degrades methylglucuronoxylan (MeGAXn), the major hemicellulose found in hardwood and crop residues, making it a potentially useful organism for the conversion of lignocellulosic biomass to alternative fuels and bio-based products (adapted from PubMed 16461704). (HAMAP: PAESJ)" Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. Y412MC10 positive Bacilli 1 Aerobic Mesophilic HostAssociated Free living Homo sapiens Sporulating No 481743 NC_013406.1 Bac0014658 Thermomonospora curvata DSM 43183 "Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) is an aerobic, cellulolytic, thermophilic Gram-positive bacterium isolated from straw compost. It produces a number of industrially important compounds like cellulase, alpha-amylase, and polygalacturonate lyase. T. curvata can utilize many organic compounds present in the natural environment, such as cellulose starch, xylose or pectin. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Thermomonospora Thermomonospora curvata DSM 43183 Positive Bacilli Yes Aerobic 45 Chemoorganotroph Thermophilic Specialized Free living Filaments Sporulating 471852 NC_013510.1 Bac0014659 Metamycoplasma hominis ATCC 23114 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hominis 347256 NC_013511.1 Bac0014660 Streptobacillus moniliformis DSM 12112 "Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) is an aerobic Gram-positive bacterium isolated from a case of rat bite fever. This systemic illness is characterized by fever, chills, and joint pain which can progress to endocarditis, meningitis or pneumonia if left untreated. Although infection is usually associated with a rodent bite, this disease can be caused by ingestion of contaminated food or water. S. moniliformis is the causative agent of rat bite fever in North and South America while a different organism, Spirillum minus, is primarily responsible for this disease in Asia and other countries. (Adaptated from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29309). (EBI Integr8)" Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis DSM 12112 Negative Bacilli No 1 2 Microaerophilic Mesophilic HostAssociated Free living Homo sapiens Filaments Nonsporulating Yes 519441 NC_013516.1 Bac0014661 Sebaldella termitidis ATCC 33386 "Sebaldella termitidis (strain ATCC 33386 / NCTC 11300), formerly Bacteroides termitidis, is an uricolytic, obligately anaerobic Gram-negative bacterium isolated from the termite intestine. It is nonmotile and has rod-shaped cells with central swellings that occur singly, in pairs, and in filaments. Surface colonies are 1 to 2 mm in diameter, circular, and transparent to opaque. Colonies in deep agar are lenticular and nonpigmented. This organism is able to degrade uric acid to CO2, acetate, and ammonia, and may play a role in providing nitrogen to the termite host. Acetic and lactic acids are the major end products of glucose metabolism; formic acid may also be produced. Acid is produced from glucose, fructose, maltose, mannitol, mannose, rhamnose, sucrose, trehalose, and xylose. (Adaptated from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29539). (EBI Integr8)" Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sebaldella Sebaldella termitidis ATCC 33386 Negative Bacilli No 1 2 Anaerobic Mesophilic HostAssociated Free living Termite Nonsporulating No 526218 NC_013518.1 Bac0014662 Streptosporangium roseum DSM 43021 "Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) is an aerobic Gram-positive bacterium isolated from vegetable garden soil in 1955. It produces aerial mycelium and the color of the substrate mycelium is red-brown to yellow-brown. S. roseum utilizes glucose, arabinose, sucrose, xylose, fructose, and raffinose, but not inositol, mannose, rhamnose, or cellulose. It produces a secondary metabolite, the antibiotic angucycline WS 79089B, which is an inhibitor of the endothelin-converting enzyme. In contrast to S. carneum, S. roseum does not produce an antibiotic against Staphylococcus aureus. (Adaptated from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.631049/139). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium roseum DSM 43021 Positive Filamentous Yes 1 1 Aerobic 29 Mesophilic Terrestrial Free living Sporulating No 479432 NC_013595.1 Bac0014663 Rothia mucilaginosa DY-18 "Rothia mucilaginosa (strain ATCC DY-18) is a cocci-shaped Gram-positive bacterium that inhabits the oral cavity and upper respiratory tract. The bacterium is considered as an opportunistic pathogen and has been associated with endocarditis, meningitis, and peritonitis. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa DY-18 Positive Cocci Yes 1 1 Microaerophile Mesophilic HostAssociated Free living Homo sapiens Yes 680646 NC_013715.1 Bac0014664 Pirellula staleyi DSM 6068 "Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) is a strictly aerobic, heterotrophic Gram-negative bacterium isolated from the freshwater Lake Lansing, MI, USA. It is found in the fresh and brackish water, as well as in the hypersaline lakes. The mature cell shape is teardrop- to pear-shaped, with the attachment pole slightly pointed. Crateriform structures are predominantly on the reproductive cell pole only. Occasionally, small crateriform structures may also be observed on the non-reproductive and nonpiliated pole of the cell opposite the budding site. The position of the monotrichous flagellum is at the reproductive cell pole. P. staleyi produces pigmented colonies and motile daughter and sessile mother cells. P. staleyi is free-living, but is also attached to filamentous algae and cyanobacteria by a holdfast located at the distal end of the fascicle (the multifibrillar major appendage) or at the nonreproductive (nonbudding and non-piliated) pole of the cell, if a fascicle is not present. A unique feature seen in P.staleyi is the occurrence of 'hump' protrusions including both cell wall and cytoplasm. These protrude are 200 nm in diameter measured at the base of the structure. One or two are visible per cell, and when two are visible these are distributed in a characteristic manner opposite to each other in the cell near the narrow pole. They appear to conform to the definition of prosthecae as cellular appendages or extensions of the cell containing cytoplasm. The functions proposed for the prosthecae include increasing surface area, reproduction, and stalk function. The cell envelope of strain P. staleyi contains no peptidoglycan but consists almost entirely of protein. P. staleyi hydrolyses casein, aesculin, gelatin and starch, but not DNA. It produces H2S from thiosulfate, and utilizes fucose, pectin, lactose, maltosemelibiose, raffinose, sucrose, and trehalose as carbon source, but not glycerol, glutamic acid, or chondroitin sulphate. It is resistant to ampicillin and penicillin (1000 ug ml-1), cephalothin (100 ug ml-1), streptomycin (500 ug ml-1) and cycloserine (100 ug ml-1), but not to tetracycline (10 ug ml-1 is lethal). (Adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.68923/174). (EBI Integr8)" Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Pirellula Pirellula staleyi DSM 6068 Negative Cocci No 1 2 Aerobic Mesophilic Aquatic Free living Singles Nonsporulating No 530564 NC_013720.1 Bac0014665 Gardnerella vaginalis 409-05 "Gardnerella vaginalis (strain 409-05) is a facultative anaerobic Gram-variable bacterium. It is the most prevalent sexually transmitted organism and is associated with bacterial vaginosis (BV) in which the normal lactobacilli microbiota is replaced by relatively high concentrations of other bacteria, especially G. vaginalis. It reflects a complex alteration of the vaginal microbiota, normally in the absence of inflammatory response. It generally leads to the presence of intense discharges in the absence of itching, burning sensations or urinary symptoms. G. vaginalis was found to be a risk factor for the acquisition of human immunodeficiency virus (HIV), in which stimulation of HIV expression by G. vaginalis was demonstrated. This bacterium is also associated with bacteraemia, urinary track infections, and neonatal meningitis. (Adaptated from PMID: 20221621). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis 409-05 Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 553190 NC_013721.1 Bac0014666 Kribbella flavida DSM 17836 "Kribbella flavida (strainDSM 17836 / JCM 10339 / NBRC 14399) is a strictly aerobic Gram-positive bacterium isolated from soil in China. It possesses a vegetative aerial mycelium which consists of hyphae extensively branched that fragment into short to elongated rod-like elements. The colonies are pasty and have lichenous shapes with irregular edges. K.flavida utilizes glucose, cellobiose, maltose, melibiose as a sole carbon and energy sources, but is not able to hydrolyze starch. Growth occurs at pH 5 and 9 and at 20 and 37 degrees Celsius. It activity is weak at 40 degrees Celsius and growth does not occur at 45 degrees Celsius. (Adapted from PMID: 10319498). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella flavida DSM 17836 Positive Bacilli Yes 1 1 Aerobic Mesophilic Terrestrial Free living Sporulating No 479435 NC_013729.1 Bac0014667 Conexibacter woesei DSM 14684 "Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) is an aerobic, non-sporulating Gram-positive bacterium isolated from a Forest soil in Gerenzano (Italy). The cells are motile due to the presence of long peritrichous flagella, and bodies are formed by self-aggregation of flagella. C.woesei is able to grow at 22, 28, 37 and to a lesser extent, at 4 degrees Celsius. No growth is obtained at 43 or 50 degrees Celsius. Growth occurs at pH values between 6 and 8, with an optimum at 7-7.5. NaCl is not tolerated at concentrations of 2% (w/v) or above. C.woesei is able to utilize the following substrates: glycerol, L-arabinose, D-ribose, D-xylose, acetic acid, ketovaleric acid, propionic acid, pyruvic acid, methylpyruvate, hydroxybutyric acid, ketoglutaric acid and ketovaleric acid. It is also able to reduce nitrate to nitrite. (Adapted from PMID: 12710628). (EBI Integr8)" Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei DSM 14684 Positive Bacilli No 1 1 Aerobic Mesophilic Terrestrial Free living Pairs- Singles Nonsporulating No 469383 NC_013739.1 Bac0014668 Geodermatophilus obscurus DSM 43160 Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) is an aerobic Gram-positive bacterium isolated from the Amargosa desert in Nevada. It is a member of the Actinomycetales that grows in dry soil or on the surfaces of rocks and monuments (where it causes structural damage). (HAMAP: GEOOG) Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus obscurus DSM 43160 Negative Cocci No 1 1 Aerobic 29 Chemoorganotroph Mesophilic Terrestrial Free living Filaments No 526225 NC_013757.1 Bac0014669 Saccharolobus islandicus L.D.8.5 "Saccharolobus islandicus L.D.8.5 is a spherical, coccoid-shaped microorganism that typically exists as single cells. This species is a facultative aerobe, which allows it to adapt to varying oxygen levels in its specialized habitat. It thrives optimally at a temperature of 75.0 °C, indicating its adaptation to high-temperature environments, commonly found in geothermal areas or hot springs.↵↵As a heterotroph, S. islandicus L.D.8.5 derives its energy from organic compounds, which reflects its ecological niche in environments rich in organic substrates. The combination of its unique morphology, temperature preference, and metabolic capabilities suggests that this organism plays a significant role in nutrient cycling within its habitat. ↵↵The ability of S. islandicus L.D.8.5 to survive and grow in extreme thermal conditions while employing a flexible metabolic strategy may provide insights into the adaptations of microorganisms in high-temperature ecosystems. This adaptability could also have implications for biotechnological applications, where extremophiles are often harnessed for their unique enzymatic properties." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus Cocci No 1 1 Facultative aerobe 75 Heterotroph Hyperthermophilic Specialized Free living Singles 425944 NC_013770.1 Bac0014670 Hydrogenobacter thermophilus TK-6 "Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) is a strictly thermophilic, obligate chemoautotrophic and hydrogen-oxidizing Gram-negative bacterium isolated from a hot spring located in Mine, Izu, Japan. Phylogenetic analysis based on the 16S ribosomal DNA sequence show that the strain is the deepest branching point among the Bacteria. In accordance with this, distinctive characteristics, such as unusual composition of cellular fatty acids (C18:0 and C20:1 as major fatty acids), a novel sulfur-containing quinone called methionaquinone and a characteristic carbon anabolism (via the reductive tricarboxylic acid cycle), have been reported. Moreover, it is able to assimilate ammonium using glutamine synthetase (GS). Its optimal growth temperature is around 70 to 75 degrees Celsius. (Adapted from: http://ijs.sgmjournals.org/cgi/reprint/34/1/5.pdf). (EBI Integr8)" Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Hydrogenobacter Hydrogenobacter thermophilus TK-6 Negative rod No 1 2 Aerobic 45 Chemolithoautotroph Thermophilic Free living non-spore-forming No 608538 NC_013799.1 Bac0014671 Thermocrinis albus DSM 14484 "Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) is an anaerobic, hyperthermophilic, pink-colored Gram-negative bacterium isolated from whitish streamers in a sulfur-rich hot spring in Hveragerthi, Iceland. The generic name derives from the Greek word ""therme"", meaning ""heat"", and the Latin word ""crinis"", hair, meaning ""hot hair"", referring to the long hair-like filamentous cell structures. In an environment with a continuous flow this organism becomes filamentous, forming long white streamers. T. albus appears to be strictly chemolithoautotrophic which differentiates it from its two sister species T. ruber and T. minervae, which both can also grow chemoorganoheterotrophically. T. albus grows optimally under microaerophilic conditions when hydrogen and sulfur are present simultaneously as electron donors. Growth is observed in the temperature range of 55-89 degrees Celsius. It appears to play a major ecological role in global biochemical cycles in such high-temperature habitats. (Adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.761490/199). (EBI Integr8)" Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Thermocrinis Thermocrinis albus DSM 14484 Negative Bacilli No 1 2 Aerobic Chemolithoautotroph Thermophilic Fresh water- Hot spring Free living Clusters- Filaments- Singles Nonsporulating No 638303 NC_013894.1 Bac0014672 Thermoanaerobacter italicus Ab9 "Thermoanaerobacter italicus (strain DSM 9252 / Ab9) is an anaerobic, thermophilic, spore-forming Gram-positive bacterium isolated from a thermal spa in Italy. It is able to degrade pectin and pectate (polygalacturonic acid) at high temperatures. It grows optimally at 70 degrees Celsius with a growth rate of 0.23 h(-1) with pectin and 0.12 h(-1) with pectate as substrates. Xylan, starch, and glycogen are also utilized as carbon sources and thermoactive xylanolytic (highest activity at 70 degrees - 75 degrees Celsius), amylolytic as well as pullulolytic enzymes (highest activity at 80 degrees - 85 degrees Celsius) are formed. (Adapted from PMID: 9680298). (EBI Integr8)" Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter italicus Ab9 Positive Bacilli Yes 1 1 Anaerobic 70 Hyperthermophilic Specialized Free living Pairs- Singles Sporulating No 580331 NC_013921.1 Bac0014673 Escherichia coli O55:H7 str. CB9615 "Escherichia coli is a Gram-negative straight rod, which either uses peritrichous flagella for mobility or is nonmotile. It is a facultatively anaerobic chemoorganotroph capable of both respiratory and fermentative metabolism. E.coli serves a useful function in the body by suppressing the growth of harmful bacterial species and by synthesising appreciable amounts of vitamins. It is an important component of the biosphere. It colonizes the lower gut of animals and survives when released to the natural environment, allowing widespread dissemination to new hosts. Pathogenic E.coli strains are responsible for infection of the enteric, urinary, pulmonary and nervous systems. Comparison of 20 E.coli/Shigella strains shows the core genome to be about 2000 genes while the pan-genome has over 18,000 genes. There are multiple, striking integration hotspots that are conserved across the genomes, corresponding to regions of abundant and parallel insertions and deletions of genetic material.This strain is an avian pathogenic E.coli (APEC), and was isolated from the lung of a chicken with colisepticemia. E.coli APEC O1 is an O1:K1:H7 strain belonging to phylogroup B2 and was chosen for sequencing as it possesses traits characteristics of E.coli which cause disease outside of the intestinal tract i.e. APEC and UPEC (uropathogenic E.coli) strains. It is highly virulent in chickens. It is closely related to E.coli UTI89, a UPEC strain of E.coli (ECOUT). It contains 4 plasmids, pAPEC-O1-ColBM, pAPEC-O1-R, pAPEC-O1-Cryptic1 and pAPEC-O1-Cryptic2. Plasmid pAPEC-O1-ColBM is an F-type plasmid that produces colicins B and M and encodes a putative virulence cluster. Plasmid pAPEC-O1-R encodes resistance to eight antimicrobial agents. The cryptic plasmids are somewhat related to Yersinia-type plasmids and do not confer any apparent phenotypes. (HAMAP: ECOK1)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli CB9615 Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Pairs - Singles Nonsporulating 701177 NC_013941.1 Bac0014674 Denitrovibrio acetiphilus DSM 12809 "Denitrovibrio acetiphilus (strain DSM 12809 / N2460) is an obligatory anaerobic, dissimilatory nitrate-reducing Gram-negative bacterium isolated from an oil reservoir modeling column under nitrate enrichment in Norway. The cells are vibrio shaped and motile by a bipolar flagellum. D. acetiphilus grows well on acetate with nitrate as electron acceptor, producing ammonia. The presence of a 2-oxoglutarate dehydrogenase activity indicates that acetate is oxidized via the citric acid cycle. It grows at temperatures between 4 and 40 degrees Celsius and at a pH between 6.5 and 8.6. The optimum temperature is 35-37 degrees Celsius and no growth is obtained at 45 degrees Celsius. NaCl is not required for growth and D.acetiphilus grows well in medium containing up to 6% NaCl. (adapted from PMID: 10939668). (EBI Integr8)" Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Denitrovibrio Denitrovibrio acetiphilus DSM 12809 Negative Bacilli No 1 2 Anaerobic 35 Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating No 522772 NC_013943.1 Bac0014675 Helicobacter mustelae 12198 "Helicobacter mustelae is a gastric pathogen of ferrets (Mustela putorius), and was the second member of the genus identified. H. mustelae cells are smaller and typically less helical than those of H. pylori, with lateral as well as bipolar flagella. H. mustelae is virtually endemic in ferrets and other mustelids, and like H. pylori, stimulates a humoral immune response which does not clear the infection. Experimentally infected ferrets develop a gastritis which closely resembles the diffuse antral gastritis seen in some adults, and in children. Ferret gastric epithelial cell proliferation increases upon H. mustelae infection, and the bacterium has been linked to gastric adenocarcinoma and MALT lymphoma in the infected ferret. Ulcer formation in H. mustelae-infected ferrets is also common; H. mustelae infection of ferrets is the only natural model of Helicobacter-associated ulcer disease, making it a unique model. Thus the knowledge base and tractability of the ferret makes it an attractive animal model for human gastric disease due to Helicobacter infection (adapted from PMID 20219135). (HAMAP: HELM1)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter mustelae 12198 Negative Spirilla Yes 1 2 Aerobic Mesophilic HostAssociated Free living Mustela putorius furo- Homo sapiens Singles Nonsporulating 679897 NC_013949.1 Bac0014676 Nitrosococcus halophilus Nc 4 "Nitrosococcus halophilus Nc 4 is a Gram-negative, halophilic bacterium known for its role in the nitrogen cycle, particularly in marine and hypersaline environments. This microbe is capable of oxidizing ammonium to nitrite, a critical process in nitrification, which contributes to nitrogen availability in saline ecosystems. As a member of the Nitrosococcus genus, it exhibits specific adaptations that allow it to thrive in high-salinity conditions, differentiating it from non-halophilic nitrifying bacteria.↵↵The halophilic nature of Nitrosococcus halophilus Nc 4 suggests that it possesses unique osmoregulatory mechanisms and cellular structures that facilitate survival in extreme salt concentrations. Its Gram-negative cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane, may also contribute to its resilience in such environments, providing a barrier against osmotic stress and potentially harmful compounds.↵↵Understanding the biochemical pathways and environmental requirements of Nitrosococcus halophilus Nc 4 can offer insights into the functioning of microbial communities in hypersaline habitats. This species not only plays a significant role in nitrogen cycling but may also influence the broader ecological dynamics within these unique ecosystems, including nutrient availability and interactions with other halophilic microorganisms. Such insights could enhance our understanding of biogeochemical processes in extreme environments and inform the conservation of microbial biodiversity in saline ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus halophilus negative 472759 NC_013958.1 Bac0014677 Candidatus Sulcia muelleri DMIN Candidatus Sulcia muelleri Dm.This strain is being sequenced for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Candidatus Karelsulcia Candidatus Karelsulcia muelleri DMIN Negative Mesophilic Specialized Symbiotic 641892 NC_014004.1 Bac0014678 Candidatus Puniceispirillum marinum IMCC1322 alpha proteobacterium IMCC1322. This strain (IMCC1322) was isolated from the East Sea of Korea. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Puniceispirillales Candidatus Puniceispirillaceae Candidatus Puniceispirillum Candidatus Puniceispirillum marinum IMCC1322 Negative Mesophilic Aquatic Free living 488538 NC_014010.1 Bac0014679 Shewanella violacea DSS12 "Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. S.violacea strain DSS12 is a psychrophilic and piezophilic bacterium isolated from the surface layer of sediments in the Ryuku Trench at a depth of 5110m. As befits its habitat, it grows optimally at 8 degrees Celsius and at 30 MPa. The genome of S.violacea when compared to S.oneidensis reflects adaptations to the environment in the surface layer of deep-sea sediments. It can secrete a wide variety of enzymes which enables it to decompose a wide variety of organic compounds, suggesting that it contributes substantially to remineralization of organic matter in deep-sea sediments. S.violacea strongly depends on oxygen as a terminal electron acceptor, indicating that a steady supply of oxygen to the deep-sea floor through the global thermohaline circulation (when cold salty water sinks from the surface near the poles and flows at depth to all the ocean basins) is very important for maintaining adequate remineralization of deep-sea sediments. The finding that S. violacea is likely to utilize nitrate as a nitrogen source suggests that the contribution of deep-sea sediment bacteria to nitrate assimilation processes in the oceanic nitrogen cycle may need to be considered. The genome analysis has also revealed the involvement of phosphatidylethanolamine and cadiolipin in adaptation to the cold, deep-sea environment (adapted from PMID 20458400). (HAMAP: SHEVD)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella violacea DSS12 Negative Bacilli No 2 Facultative Heterotroph Psychrophilic Specialized Free living Pairs- Singles Nonsporulating No 637905 NC_014012.1 Bac0014680 Mycoplasma crocodyli MP145 "Mycoplasma crocodyli (strain ATCC 51981 / MP145) is a bacterium isolated from the joint of a crocodile with exudative polyarthritis. The sibling species of M. crocodyli, Mycoplasma alligatoris causes acute lethal primary infection of susceptible hosts, notably American alligators. This pathogen is studied to understand the mechanisms and evolutionary origins of that virulence. A genome survey indicated that M. alligatoris uses sialidase (Nanl) and hyaluronidase (NagH) to generate fuel for glycolysis from host cell glycans. M. crocodyli, which does not cause disease in American alligators, possesses NagH but not Nanl, so damage to the host's extracellular matrix alone cannot explain the particular virulence of M. alligatoris. (Adapted from : http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=36867). (EBI Integr8)" Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma crocodyli MP145 Negative Cocci No 1 1 Facultative 37 Mesophilic HostAssociated Free living Crocodylus niloticus Singles Nonsporulating No 512564 NC_014014.1 Bac0014681 Rhodobacter capsulatus SB 1003 "Rhodobacter capsulatus is a purple, nonsulfur photosynthetic bacterium. The biochemical versatility to choose between photo- and heterotrophic growth and nitrogen fixation is packed in a genome that is 75% of the size of the Escherichia coli genome. Ease of plating and generation of mutations together with convenient systems for cloning and genetic analysis make R.capsulatus a popular model system for studies of photochemical reaction centers and nitrogen fixation. The GTA (gene transfer agent) has been used for insertional mutagenesis, gene replacement, and linkage analysis (from http://rhodo.img.cas.cz/). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter capsulatus SB1003 Negative Rod Yes 1 2 Facultative anaerobe 30 Chemoheterotroph Mesophilic Aquatic Free living Nonsporulating No 272942 NC_014035.1 Bac0014682 Zunongwangia profunda SM-A87 "Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) is an orange-pigmented, strictly aerobic, oxidase- and catalase-positive, Gram-negative bacterium isolated at a depth of 1 245 m from deep-sea sediment in the southern Okinawa Trough with in situ temperature of 4.7 degrees Celsius. Z. profunda has various extracellular enzymes for carbohydrate, lipid and DNA degradation. These extracellular enzymes suggest that the bacterium is able to hydrolyze organic materials in the sediment, especially carbohydrates and proteinaceous organic nitrogen. It is also moderately halophilic. (Adapted from PMID: 20398413). (EBI Integr8)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zunongwangia Zunongwangia profunda SM-A87 Negative rod No 1 2 aerobic 29 Mesophilic non-spore-forming No 655815 NC_014041.1 Bac0014683 Priestia megaterium DSM 319 "Priestia megaterium DSM 319 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in aerobic environments. This species exhibits a robust metabolic versatility, enabling it to inhabit a range of different habitats, which may include soil, water, and various organic substrates. As an aerobic organism, P. megaterium requires oxygen for optimal growth, which aligns with its ecological roles in nutrient cycling and organic matter decomposition in diverse environments.↵↵The sporulating capability of P. megaterium is a significant trait, allowing it to withstand adverse conditions and contribute to its survival in fluctuating habitats. The formation of spores not only enhances its resilience but also plays a critical role in its dispersal mechanisms, potentially facilitating its spread across various ecosystems.↵↵Understanding the growth conditions and ecological functions of Priestia megaterium DSM 319 provides valuable insights into its potential applications in biotechnology and environmental microbiology. Its adaptability to multiple habitats suggests that it could be utilized for bioremediation purposes or in the development of biofertilizers, thereby contributing positively to agricultural practices and ecosystem health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 592022 NC_014103.1 Bac0014684 Thiomonas arsenitoxydans Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Thiomonas Thiomonas arsenitoxydans 426114 NC_014145.1 Bac0014685 Moraxella catarrhalis BBH18 "Moraxella catarrhalis BBH18 is a Gram-negative coccus that is primarily associated with host environments. This microbe exhibits a spherical shape and is classified as an aerobe, indicating that it requires oxygen for growth. The host-associated habitat suggests that M. catarrhalis BBH18 may play a role in the microbial communities present within specific host organisms. ↵↵Given its classification, M. catarrhalis BBH18 is likely to interact closely with host immune systems and could be involved in various host-microbe dynamics. The understanding of its ecological role may be enhanced by studying its interactions with other microbial species in similar environments, as well as its potential metabolic capabilities in aerobic conditions. This could provide insights into the ecological significance of M. catarrhalis BBH18 within the broader context of host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella catarrhalis Negative Cocci No 1 2 Aerobe Mesophilic HostAssociated Free living 1236608 NC_014147.1 Bac0014686 Thermobispora bispora DSM 43833 "Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) is an aerobic, thermophilic Gram-positive bacterium isolated from decaying manure. It grows at an optimum temperature between 55 and 65 degrees. (adapted from: http://www.ncbi.nlm.nih.gov/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=48999). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Thermobispora Thermobispora bispora DSM 43833 Positive Filamentous Yes 1 1 Aerobic 45 Thermophilic Terrestrial Free living Sporulating No 469371 NC_014165.1 Bac0014687 Arcobacter nitrofigilis DSM 7299 "Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) is a microaerophilic, symbiotic Gram-negative bacterium isolated from the roots of Spartina alterniflora Loisel (cordgrass) growing in salty marshes on the east coast of Canada. The species epithet nitrofigilis means ""nitrogen-fixing"" and Arcobacter meaning ""bow-shaped rod"". A. nitrofigilis is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. A. nitrofigilis cells are Gram-negative, bow-shaped or curved rods. Motility is based on a single, polar flagellum and results in rapid corkscrew motion. The habitat of all known A. nitrofigilis isolates is either the roots or the sediment around the roots of S. alterniflora Loisel growing in salt marshes. Although no pathogenic association has been described so far, A. nitrofigilis is among five Arcobacter species that were isolated from food samples such as meat and shell-fish varieties. The optimum growth temperature is 30 degrees Celsius and the temperature range is from 10-37 degrees Celsius. Neither spores nor granules are present but a brown pigment is formed from tryptophan. Growth occurs under microaerophilic conditions with oxygen as terminal electron acceptor, and under anaerobic conditions fumarate or aspartates are necessary. The metabolism of A. nitrofigilis is chemoorganotrophic with organic acids and amino acids used as carbon sources but carbohydrates are neither oxidized nor fermented. All strains of the species are halotolerant and require a minimum of 0.5% NaCl for growth and can tolerate up to 7% NaCl. A. nitrofigilis is susceptible to cephalothin and nalidixic acid but is resistant to vancomycin. (adapted from: PMID 21304714). (EBI Integr8)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter nitrofigilis DSM 7299 Negative Bacilli No 1 2 Microaerophilic Chemosynthetic Mesophilic Multiple Symbiotic Spartina alterniflora Nonsporulating No 572480 NC_014166.1 Bac0014688 Segniliparus rotundus DSM 44985 "Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578) is an aerobic, chemoorganotrophic Gram-negative bacterium isolated from human sputum in Tennessee, USA and is probably an opportunistic pathogen. It is susceptible to amikacin, cefoxitan, clarith-romycin, ciprofloxacin, doxycycline, imipenem and sulfamethoxazole at or below the respective MIC breakpoints but intermediate to tobramycin. It grows at temperatures between 28 and 37 degrees, and the optimum temperature is 33 degrees. Glucose, maltose, D-fructose and trehalose are used as carbon source for growth with acid production. (adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.791633). (HAMAP: SEGRD)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Segniliparaceae Segniliparus Segniliparus rotundus DSM 44985 Negative Bacilli No 1 2 Aerobic 32 Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 640132 NC_014168.1 Bac0014689 Methylotenera versatilis 301 Project description not provided. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylotenera Methylotenera versatilis 301 Gram-negative ovoid facultative aerobe/anaerobe 16 Methylotroph psychrotolerant non-spore-forming 666681 NC_014207.1 Bac0014690 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 "All members of the genus Propionibacterium produce propionic acid as a major metabolic end-product; however they are divided into 2 groups, a cutaneous group (which can cause acne) and a dairy group used in cheese production. P.freudenreichii has been long used in Emmental-type cheese ripening, where it drives fermentation of lactate into propionate, acetate and CO(2), resulting in holes. It also plays a role in flavor development of these cheeses. P.freudenreichii are also used in the production of vitamin B12, and strains that overproduce this vitamin have been developed. Additionally as a producer of bifidogenic compounds it stimulates growth of bifidobacteria, which are beneficial to humans. The genome sequence of strain CIRM-BIA1 (other synonyms DSM 4902 / NCIB 8099 / VPI 0405) has 22 insertion sequences, 72 different transposases and a few prophages. No pathogenicity factors from the related acne-causing P.acnes were detected in P.freundenreichii. It is able to synthesize all amino acids and nucleotides, and all vitamins except pantothenate and biotin; while the thiamine pathway seems complete this bacteria requires thiamine for growth. This bacteria grows only poorly in milk, and grows in cheese mainly due to its ability to ferment lactic acid anaerobically. It can survive the cheese cooking step (heating to 54 degrees Celsius for about 30 minutes) in a strain dependent fashion (adapted from PMID 20668525). (HAMAP: PROFC)" Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii CIRM-BIA1 Positive Rod No 1 1 Facultative Mesophilic Multiple Free living Nonsporulating No 754252 NC_014215.1 Bac0014691 Desulfurivibrio alkaliphilus AHT 2 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfurivibrio Desulfurivibrio alkaliphilus anaerobic 589865 NC_014216.1 Bac0014692 [Bacillus] selenitireducens MLS10 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salisediminibacterium Salisediminibacterium selenitireducens 439292 NC_014219.1 Bac0014693 Syntrophothermus lipocalidus DSM 12680 "Syntrophothermus lipocalidus is a thermophilic, neutrophilic, fatty-acid oxidizing syntroph, which was obtained from granular sludge of a thermophilic (55 degrees Celsius) upflow anaerobic sludge blanket (UASB) reactor which had been fed with an artificial wastewater containing sucrose, acetate and propionate as the major carbon sources i.e. from wastewater treatment sludge. Cells are weakly motile, slightly curved rods with round ends, 2-4 um long and 0.4-0.5 um wide, occurring singly or in pairs. Some flagella are seen by electron microscopy. Cells strain Gram negative, although the strain is a Firmicute. It is a strict anaerobe, growth in pure culture is observed only on crotonate. Fermentation products from crotonate are almost equimolar amounts of acetate and butyrate. In coculture with M. thermoautotrophicum strain delta H (syntrophic growth), under optimal condition, 55 degrees Celsius and neutral pH, strain TGB-C1T is able to oxidize the following saturated fatty acids: butyrate (20 mM), straight chain fatty acids from C4 to C10 (5 mM) and isobutyrate (5 mM). In coculture fatty acids with even numbers of carbon atoms are changed to acetate and methane, whilst fatty acids having odd numbers of carbon atoms are degraded to acetate, propionate and methane (adapted from PMID 10758888). (HAMAP: SYNLT)" Bacillati Bacillota Clostridia Eubacteriales Syntrophomonadaceae Syntrophothermus Syntrophothermus lipocalidus DSM 12680 Negative Bacilli No 1 1 Anaerobic 55 Thermophilic Specialized No 643648 NC_014220.1 Bac0014694 Truepera radiovictrix DSM 17093 "Truepera radiovictrix was isolated from a hot spring within a geothermal area located along the dry bed of a stream known as Ribeira Quente, on the Island of Sao Miguel in the Azores, Portugal. The hot springs in this area discharge neutral to slightly alkaline water that may reach the boiling point. Strain RQ-24T was isolated from a runoff with a temperature of 52 degrees Celsius and a pH of 7.0. The red-pigmented bacteria formed non-motile spherical cells about 1.25 to 2.0 um in diameter, most of which formed pairs or tetrads. The cytoplasm has a fibrillar nucleoid and tubular structures of unknown nature. The optimum pH of strain RQ-24T was between 7.5 and 9.5, but growth continues until pH 11.2. The optimal temperature is about 50 degrees Celsius, and maximal growth occurs in 1% NaCl, although it continues to grow in up to 6% NaCl. It is extremely resistant to ionizing radiation; 60% of the cells survive 5.0 kGy. It is aerobic, the major respiratory quinone is menaquinone 8 and no peptidoglycan was detected, although the cell wall is quite elaborate (adapted from PMID 15927420). (EBI Integr8)" Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix DSM 17093 Cocci No 1 1 Obligate aerobic Chemoorganotroph Thermophilic Fresh water- Hot spring Free living Nonsporulating No 649638 NC_014221.1 Bac0014695 Mobiluncus curtisii ATCC 43063 "Bacterial vaginosis (BV) is a common cause of abnormal vaginal discharge. It is characterised by an overgrowth of predominantly anaerobic organisms (Gardnerella vaginalis, Prevotella spp., Peptostreptocci, Mobiluncus spp.) in the vagina leading to a replacement of lactobacilli and an increase in vaginal pH. BV can arise and remit spontaneously, but often presents as a chronic or recurrent disease. BV is found most often in women of childbearing age, but may also be encountered in menopausal women, and is rather rare in children Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125) is an anaerobic, rod shaped Gram-positive bacterium found in the human vagina. (adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/31519 and PMID: 20723268). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus curtisii ATCC 43063 Positive Rod Anaerobe Mesophilic HostAssociated Free living Homo sapiens 548479 NC_014246.1 Bac0014696 Helicobacter pylori B8 "Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori B8 Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Homo sapiens Singles Nonsporulating Yes 693745 NC_014256.1 Bac0014697 Ralstonia solanacearum CFBP2957 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum 859656 NC_014307.1 Bac0014698 Dehalogenimonas lykanthroporepellens BL-DC-9 "Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) is a strictly anaerobic, reductively dechlorinating Gram-negative bacterium isolated from groundwater at a superfund (law designs to clean up sites contaminated with hazardous substances) site located near Baton Rouge, USA, in an area contaminated by high concentrations of several chlorinated alkanes and alkenes. Using H2 as an electron donor, D. lykanthroporepellens couples cell growth to reductive dechlorination of 1,2,3-trichloropropane (1,2,3-TCP), a toxic and likely carcinogenic compound. It also couples cell growth to reductive dihaloelimination reactions involving a variety of other polychlorinated aliphatic alkanes. 1,2-dichloropropane (1,2-DCP) is transformed to propene, 1,2-dichloroethane (1,2-DCA) is transformed to ethene, 1,1,2-trichloroethane (1,1,2-TCA) is transformed to vinyl chloride, 1,1,2,2-TeCA is transformed to a mixture of cis- and trans-dichloroethene (DCE). Unlike some other reductively dehalogenating bacteria, in all of the reductive dechlorination reactions characterized to date, D. lykanthroporepellens appears to exclusively utilize vicinally chlorinated alkanes as electron acceptors via dihaloelimination reactions. Sequencing the genome of D. lykanthroporepellens expands the scientific understanding needed to support the incorporation of biological processes into decision making for environmental remediation and/or long-term stewardship, particularly at sites contaminated with chlorinated alkanes. At present, enzymes and metabolic pathways associated with reductive dehalogenation of chlorinated alkanes remain largely unknown, hampering use of DNA-based approaches in decision-making regarding several environmentally important contaminants (e.g., 1,2,3-TCP, 1,2-DCA). (adapted from PMID: http://genome.jgi-psf.org/dehly/dehly.home.html). (EBI Integr8)" Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas lykanthroporepellens BL-DC-9 Negative sphere No 1 1 Anaerobic 32 Mesophilic Free living non-spore-forming No 552811 NC_014314.1 Bac0014699 Amycolatopsis mediterranei U32 "Amycolatopsis mediterranei (strain U-32) is a Gram-positive bacterium used for industry-scale production of rifamycin, which plays a vital role in antimycobacterial therapy. As the first sequenced genome of the genus Amycolatopsis, the chromosome of A.mediterranei comprising 10 236 715 base pairs, is one of the largest prokaryotic genomes ever sequenced so far. Although the predicted 9 228 protein-coding genes in the A. mediterranei genome shares the greatest number of orthologs with those of S. erythraea, it is unexpectedly followed by Streptomyces coelicolor rather than N. farcinica, indicating the distinct metabolic characteristics evolves via adaptation to diverse ecological niches. Besides a core region analogous to that common in streptomycetes, a novel 'quasi-core' with typical core characteristics is defined within the non-core region, where 21 out of the total 26 gene clusters for secondary metabolite production are located. The rifamycin biosynthesis gene cluster located in the core encodes a cytochrome P450 enzyme essential for the conversion of rifamycin SV to B, revealed by comparing to the highly homologous cluster of the rifamycin B-producing strain S699 and further confirmed by genetic complementation. The genomic information of A. mediterranei demonstrates a metabolic network orchestrated not only for extensive utilization of various carbon sources and inorganic nitrogen compounds but also for effective funneling of metabolic intermediates into the secondary antibiotic synthesis process under the control of a seemingly complex regulatory mechanism. (adapted from PMID: 20567260). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis mediterranei U32 Positive Filamentous No 1 1 Aerobic Mesophilic No 749927 NC_014318.1 Bac0014700 Herbaspirillum seropedicae SmR1 "Herbaspirillum seropedicae is a small spiral-shaped bacteria originally isolated from herbaceous seed-bearing plants. Strain SmR1 is a spontaneous streptomycin resistant mutant of strain Z78 (ATCC 35893), which was isolated from Sorghum bicolor roots in Brazil in 1982. It is able to fix atmospheric N(2) under microaerobic conditions and grows well with N(2) as a sole nitrogen source. It is an endophytic diazotroph found in association with roots, stems and leaves of economically important graminaceous species such sugarcane, rice and maize, as well as at least 10 other Gramineae. Green-house and field experiments showed that inoculation with H. seropedicae increased the growth rates, crop yield and the dry weight of both roots and shoots of several plant species (adapted from PMID 8782693). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum seropedicae SmR1 Spirilla Yes 1 2 Aerobic Mesophilic HostAssociated Free living Rice No 757424 NC_014323.1 Bac0014701 Brachyspira pilosicoli 95/1000 "Brachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000) is an anaerobic Gram-negative bacterium which colonizes the large intestine of various species of birds and mammals, including humans. It causes ""intestinal spirochetosis"", a condition characterized by mild colitis, diarrhea and reduced growth. The three Brachyspira species shared 1,087 genes and showed evidence of extensive genome rearrangements. Despite minor differences in predicted protein functional groups, the species had many similar features including core metabolic pathways. Genes distinguishing B. pilosicoli from B. hyodysenteriae included those for a previously undescribed bacteriophage that may be useful for genetic manipulation, for a glycine reductase complex allowing use of glycine whilst protecting from oxidative stress, and for aconitase and related enzymes in the incomplete TCA cycle, allowing glutamate synthesis and function of the cycle during oxidative stress. B. pilosicoli had substantially fewer methyl-accepting chemotaxis genes than B. hyodysenteriae and hence these species are likely to have different chemotactic responses that may help to explain their different host range and colonization sites. B. pilosicoli lacked the gene for a new putative hemolysin identified in B. hyodysenteriae WA1. (adapted from PMID: 20625514). (EBI Integr8)" Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli 95/1000 Negative Spirilla No 1 2 Anaerobe Chemoorganotroph Mesophilic HostAssociated Symbiotic Sus scrofa Yes 759914 NC_014330.1 Bac0014702 Olsenella uli DSM 7084 "Olsenella species, particularly O.uli, are common members of the microbiota associated with primary endodontic infection, sometimes from blood of humans with local oral or gastrointestinal infections, and are also found in the bovine rumen. O.uli has been found to predominate over other Gram-positive rods in root canal samples taken after chemomechanical preparation and intracanal medication, suggesting that this species can resist intracanal disinfection measures and thus may be involved in persistent dental infections.Strain VPI D76D-27CT was isolated from either human gingival crevices or periodontal pockets. The bacteria are nonmotile, Gram-positive rods that occur singly, in pairs, and in short chains; the central part of the cell may swell particularly when grown on solid medium. This strain is microaerotolerant to anaerobic and grows optimally at 37 degrees Celsius. It does not grow on 6.5% w/v NaCl, and is able to ferment glucose, glycogen, trehalose and starch. Lactic acid is a major product of the strain VPI D76D-27CT, which is suspected to be important in inflammatory processes of endodontic infections (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1082860/sigs.1082860_pdf and PMID 20435744). (HAMAP: OLSUV)" Bacillati Actinomycetota Coriobacteriia Coriobacteriales Atopobiaceae Olsenella Olsenella uli DSM 7084 Positive Bacilli No 1 1 Anaerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Chains- Pairs- Singles Nonsporulating Yes 633147 NC_014363.1 Bac0014703 Desulfarculus baarsii DSM 2075 "Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) is an anaerobic, sulfate-reducing Gram-negative bacterium capable of complete oxidation of organic compounds to CO2. (Adapted from http://www.ncbi.nlm.nih.gov/genomeprj/37955). (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus baarsii DSM 2075 Negative Yes 1 2 Anaerobic Mesophilic Mud Free living No 644282 NC_014365.1 Bac0014704 Thermosediminibacter oceani DSM 16646 "Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) is an anaerobic, thermophilic, Gram-negative bacterium isolated from enrichment cultures obtained from deep sea sediments of Peru Margin collected during Leg 201 of the Ocean Drilling Program. The cells are straight to curved rods, 0.2-0.7 um in diameter and 1.5-16 um in length. Cells occur singly, in pairs, or in chains and tend to elongate and form aggregates. It grows with a range of pH from 6.3 to 9.3 with an optimum at 7.5 and a temperature range from 52 to 76 degrees Celsius with an optimum at 68 degrees Celsius. The salinity range for growth is from 0 to 6% (w/v), with an optimum at 1%. Cellobiose, fructose, galactose, glucose, maltose, mannose, raffinose, sucrose, trehalose, xylose, methanol, inositol, manitol, sorbitol, lactate, pyruvate serve as carbon and energy. Thiosulfate, elemental sulfur, and MnO2 can serve as electron acceptors. (Adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.1133078/374 and PMID: 15965715). (EBI Integr8)" Bacillati Bacillota Clostridia Thermosediminibacterales Thermosediminibacteraceae Thermosediminibacter Thermosediminibacter oceani DSM 16646 Negative Bacilli Yes 1 2 Anaerobic 68 Thermophilic Specialized Free living No 555079 NC_014377.1 Bac0014705 Thermoanaerobacterium thermosaccharolyticum DSM 571 "Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) is an anaerobic, thermophilic Gram-positive bacterium. T. thermosaccharolyticum employs a variety of enzymes for the efficient degradation of starch, amylose and pullulan and has been shown to associate with C. thermocellum in high temperature, cellulose-degrading environments. Such co-cultures of cellulose-degrading and xylose-utilizing bacteria have been proposed as an efficient means of converting cellulosic compounds to ethanol and other byproducts. (Adapted from: http://genome.jgi-psf.org/theth/theth.home.html). (EBI Integr8)" Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium thermosaccharolyticum DSM 571 Positive Rod No 1 1 Anaerobic Chemoheterotroph Thermophilic Hot spring Free living Pairs- Singles Sporulating No 580327 NC_014410.1 Bac0014706 Ignisphaera aggregans DSM 17230 "Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1) is a strictly anaerobic, moderately acidophilic, heterotrophic hyperthermophilic and fermentative archaeon isolated from a near neutral, boiling spring in Kuirau Park, Rotorua, New Zealand. The generic name derives from the Latin word ""ignis"" meaning ""fire"", and ""sphaera"" meaning ""ball"", referring to coccoid cells found in the high-temperature environment such as hot springs. The species epithet is derived from the Latin word ""aggregans"" meaning ""aggregate forming"", referring to the appearance of the cells when grown on mono-, di- or polysaccharides. The cells are regular to irregular cocci which occur singly, in pairs or as aggregates of many cells. They usually have dimensions between 1-1.5 um. I.aggregans grows optimally between 92 and 95 degrees Celsius, the temperature range for growth is 85-98 degrees Celsius. The pH range for growth is 5.4-7.0, with an optimum at pH 6.4. The strain grows in the presence of up to 0.5% NaCl, however, it grows optimally without NaCl. It is resistant to novobiocin and streptomycin but sensitive to erythromycin, chloramphenicol and rifampicin. I. aggregans is of particular interest because it is able to ferment quite a number of polysaccharides and complex proteinaceous substrates. (Adapted from PMID 21304693). (HAMAP: IGNAA)" Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera aggregans DSM 17230 Cocci No 1 1 Anaerobic 95 Heterotroph Hyperthermophilic Aquatic Free living Clusters Nonsporulating No 583356 NC_014471.1 Bac0014707 Bacillus spizizenii str. W23 "Bacillus spizizenii str. W23 is a Gram-negative bacterium belonging to the genus Bacillus, which is known for its diverse metabolic capabilities and environmental resilience. This strain, like others within the Bacillus genus, exhibits the ability to form endospores, a trait that allows it to survive in extreme conditions. Bacillus spizizenii str. W23 is characterized by its rod-shaped morphology, typical of many Bacillus species, and it is likely to thrive in nutrient-rich environments where it can utilize a variety of organic compounds.↵↵The Gram-negative nature of Bacillus spizizenii str. W23 suggests a complex cell wall structure, which includes an outer membrane containing lipopolysaccharides. This structural configuration may contribute to its interactions within microbial communities and its potential resilience against certain antimicrobial agents. While specific metabolic pathways and ecological roles of this strain are not detailed here, the Bacillus genus is often associated with soil environments, where it plays a crucial role in nutrient cycling and organic matter decomposition.↵↵In summary, Bacillus spizizenii str. W23 exemplifies the characteristics of its genus, with its Gram-negative status and endospore-forming ability potentially enabling it to occupy various ecological niches. Further exploration of its metabolic capabilities could provide insights into its role in biogeochemical processes and its potential applications in biotechnology or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus spizizenii negative 655816 NC_014479.1 Bac0014708 Paenibacillus polymyxa E681 "Paenibacillus polymyxa (strain E681) is a spore-forming Gram-positive bacterium isolated from the rhizosphere of winter barley grown in Korea. It has a great potential for agricultural applications due to its ability to promote plant growth and suppress plant diseases. P. polymyxa produces antibiotics (polymyxin, fusaricidin) and a plant hormone, secretes a variety of hydrolytic enzymes, and has a good root-colonizing ability. It may also synthesize a polyketide, a tridecaptin-like non-ribosomal peptide, and a hybrid of polyketide and non-ribosomal peptide. P. polymyxa also produces volatiles that may promote growth and induce resistance of plants, and one or more N-acyl-L-homoserine lactonases. (Adapted from PMID: 20851896). (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa E681 Positive Rod Yes 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Sporulating No 349520 NC_014483.2 Bac0014709 Spirochaeta thermophila DSM 6192 "Known members of the Spirochaeta genus are anaerobes or facultative anaerobes isolated from a variety of aquatic habitats such as the sediments and the water column of ponds, lakes, rivers and oceans. Spirochaeta thermophila is a thermophilic, free-living obligate anaerobe which is able to degrade various alpha- and beta-linked sugar polymers, including cellulose and hemicellulose, the two main components of plant biomass. Strain DSM 6192 was isolated from brackish thermal Spring RI 19 on the edge of Green Lake on Raoul Island in the Kermadec archipelago about 1000 km northeast of New Zealand. Growth occurred over the pH range 6.25-7.15 with an optimum pH of 6.95. It grows between 44 to 73 degrees Celsius with an optimum between 64 and 66 degrees Celsius. Growth occurred at NaC1 concentrations between 0.1% and 2.5%, with an optimum around 0.4%. It has been found to encode a large number of glycoside hydrolases. The genome data indicates that cellulose and hemicellulose degradation in S. thermophila is accomplished by a non-cellulosomal enzyme system (adapted from PMID 20935097 and Arch Microbiol (1991) 155:396-401). (EBI Integr8)" Pseudomonadati Spirochaetota Spirochaetia Winmispirales Winmispiraceae Winmispira Winmispira thermophila DSM 6192 Negative Spirilla Yes 1 2 Anaerobic Thermophilic Marine- Hot spring Free living No 665571 NC_014484.1 Bac0014710 Halomonas elongata DSM 2581 "Halophilic bacteria and archaea have developed two basically different osmoregulatory mechanisms to cope with ionic strength and the considerable water stress, namely the ""salt-in-cytoplasm"" mechanism and the organic osmolyte mechanism. Organisms following the salt-in-cytoplasm mechanism adapt the interior protein chemistry of the cell to high salt concentration. The osmotic adjustment of the cell can be achieved by raising the salt concentration (KCl) in the cytoplasm according to the environmental osmolarity. In contrast, microorganisms applying the organic osmolyte mechanism keep their cytoplasm, to a large extent, free of KCl and the design of the cell's interior remains basically unchanged. Instead, organisms of this group accumulate highly water-soluble organic compounds, in order to maintain an osmotic equilibrium with the surrounding medium. These molecules do not disturb the cell's metabolism, even at high cytoplasmic concentrations, and are thus aptly named ""compatible solutes"". Compatible solutes are beneficial for bacterial cells not only as osmoregulatory solutes, but also as protectants of proteins by mitigating detrimental effects of freezing, drying and high temperatures. The predominant compatible solutes in halophilic bacteria are the amino acid derivatives glycine-betaine and ectoine (1,4,5,6,tetra-2-methyl-4-pyrimidonecarboxylic acid).Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) is an halophilic Gram-negative bacterium isolated from a solar salt facility. It is halotolerant up to a concentration of 35% and uses ectoine as its major compatible solute. H.elongata can both, synthesize and degrade ectoine. The degradation of ectoine proceeds via hydrolysis of ectoine to -acetyl-L-2,4-diaminobutyric acid, followed by deacetylation to diaminobutyric acid. In H. elongata, diaminobutyric acid can either flow off to aspartate or re-enter the ectoine synthesis pathway, forming a cycle of ectoine synthesis and degradation. Ectoine levels are highly regulated according to external salt levels but the overall picture of its metabolism and control is not well understood. Apart from its critical role in cell adaptation to halophilic environments, ectoine can be used as a stabilizer for enzymes and as a cell protectant in skin and health care applications. Ectoine is produced annually on a scale of tons in an industrial process using H. elongata as producer. (Adapted from PMID: 20849449). (HAMAP: HALED)" Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas elongata DSM 2581 Negative Bacilli Yes 1 2 Facultative Mesophilic Fresh water Free living Nonsporulating No 768066 NC_014532.2 Bac0014711 Ferrimonas balearica DSM 9799 "Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) is a motile, facultatively anaerobic, non spore-forming Gram-negative bacterium isolated from the upper few centimeters of marine sediment of the Palma de Mallorca harbor, Spain. This is the first completed genome sequence of a member of the genus Ferrimonas. The generic name derives from the Latin word ""ferrum"" meaning ""iron"" and the Greek word ""monas"" meaning ""unit"", referring to an iron(III)-reducing cell. The cells are straight rods with rounded ends and appear singly, occasionally in pairs or short chains and usually not encapsulated. F. balearica is motile by means of monotrichous flagella. Colonies produce a black iron precipitate when the cells are grown on TSI agar, and are often brown and mucous when the cells are grown under aerobic conditions. F. balearica is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO2, selenate, selenite and thiosul-fate as electron acceptors F. balearica requires a minimum of 0.5% NaCl for growth, with a range of NaCl tolerance of 0.5%-7.5%. It does not grow at 5 or 44 degrees Celsius but does grow at 42 degrees Celsius. The pH range for growth is 6-9. The genus Ferrimonas can be distinguished from other strictly respiratory Gram-negative genera of the Gammaproteobacteria based on its ability to reduce Fe(III), denitrification, growth at 42 degrees Celsius, presence of phenylalanine deaminase activity, inability to grow in NaCL-free media, lack of gelatinase, urease and a negative reaction of Simmons citrate test. (Adapted from PMID 21304747). (EBI Integr8)" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas balearica DSM 9799 Negative Bacilli Yes 1 2 Facultative Chemoorganotroph Mesophilic Aquatic Free living Nonsporulating No 550540 NC_014541.1 Bac0014712 Glutamicibacter arilaitensis Re117 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter arilaitensis 861360 NC_014549.1 Bac0014713 Paenibacillus polymyxa SC2 "Paenibacillus polymyxa (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) is an important plant growth-promoting rhizobacterium (PGPR), Gramm-positive bacterium isolated from the rhizosphere of pepper in Guizhou, China. It is widespread in the soil and widely used in agriculture, industry, and environmental remediation because of its multiple functions. It has been widely used in biological control of soil-borne plant diseases. There are many essential genes in the plasmid, such as the genes involving the metabolism of purine, pyrimidine, and lipid, as well as ribosomal proteins, translation elongation factors, and different types of DNA methyltransferase, indicating its importance to the strains life. There are many genes involved in antibiotic biosynthesis in the chromosome, such as a fusaricidin-synthetic gene (PPSC2_c0086), a polymyxin-synthetic gene cluster (PPSC2_c4710-c4715), a bacitracin synthetase 1 gene (PPSC2_c2653), an iturin A synthetase gene (PPSC2_c2652), a lantibiotic-synthetic gene cluster (PPSC2_c1561-c1567), a bacillorin synthetase B gene (PPSC2_c2638), and a polyketide-synthetic gene cluster (PPSC2_c3386-c3400). (Adapted from PMID: 21037012). (EBI Integr8)" Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa SC2 Positive Rod Yes 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Sporulating No 886882 NC_014622.2 Bac0014714 Gardnerella vaginalis ATCC 14019 "Gardnerella vaginalis (strain 409-05) is a facultative anaerobic Gram-variable bacterium. It is the most prevalent sexually transmitted organism and is associated with bacterial vaginosis (BV) in which the normal lactobacilli microbiota is replaced by relatively high concentrations of other bacteria, especially G. vaginalis. It reflects a complex alteration of the vaginal microbiota, normally in the absence of inflammatory response. It generally leads to the presence of intense discharges in the absence of itching, burning sensations or urinary symptoms. G. vaginalis was found to be a risk factor for the acquisition of human immunodeficiency virus (HIV), in which stimulation of HIV expression by G. vaginalis was demonstrated. This bacterium is also associated with bacteraemia, urinary track infections, and neonatal meningitis. (Adaptated from PMID: 20221621). (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis ATCC 14019 Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Homo sapiens Nonsporulating Yes 525284 NC_014644.1 Bac0014715 Methanothermus fervidus DSM 2088 "Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) is a strictly anaerobic, strictly autotrophic , thermophilic archaeon isolated from an anaerobic solfataric hot spring in Iceland. The species epithet fervidus comes from the latin adjective ""fervidus"", glowing hot, burning, fervent, because of its growth in almost-boiling water. This hyper-thermophilic genus is thought to be endemic in Icelandic hot springs. M. fervidus was not only the first characterized organism with a maximal growth temperature (97 degrees Celsius) close to the boiling point of water, but also the first archaeon in which a detailed functional analysis of its histone protein was reported and the first one in which the function of 2,3-cyclodiphosphoglycerate in thermoadaptation was characterized. Cells are curved rods, 1-3 um long and 0.3-0.4 um in width, occurring singly and in pairs. Round, smooth, opaque, and slightly grayish colonies of 1 to 3 mm in diameter are observed on modified MM-medium plates containing trace amounts of solid sodium dithionite, sodium silicate solution and resazurin. M. fervidus does not grow at temperatures below 61 or above 97 degrees Celsius; the optimal temperature is 83 degrees Celsius. Growth occurs at a slightly acidic pH and equal to 6.5, while no growth is observed at pH above 7.0. M. fervidus produces methane from H2 + CO2 and gains energy by oxidizing H2 to reduce CO2 as the terminal electron acceptor. At the time of isolation, M. fervidus was described to be nonmotile. Later, it was described to be motile via bipolar peritrichous ""flagella"", which was taken to indicate motility. These cell surface appendages, however, are determined to have a diameter of 5-6 nm, and therefore, very probably, represent not organelles used for motility, but for adhesion. M. fervidus produces large intracellular potassium concentrations and amounts of 2,3-cyclic diphosphoglycerate, which are both thought to be involved in the thermoadaptation. Moreover, the DNA-binding protein HMf (histone M. fervidus), which binds to double stranded DNA molecules and increases their resistance to thermal denaturation, has been of interest in M. fervidus. The D-glyceraldehyde-3-phosphate dehydrogenase of M. fervidus shows high sequence similarity to the enzymes from eubacteria and from the cytoplasm of eukaryotes. This enzyme reacts with both NAD and NADP and is not inhibited by pentalenolactone. However, the enzyme activity is low at temperatures below 40 degrees Celsius, but it is intrinsically stable only up to 75 degrees Celsius, which is interesting as growth of M. fervidus may occur up to 97 degrees Celsius. (Adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.1283367). (HAMAP: METFV)" Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanothermaceae Methanothermus Methanothermus fervidus DSM 2088 Bacilli Yes 1 1 Anaerobic 80 Thermophilic Specialized Free living Singles- Chains Nonsporulating No 523846 NC_014658.1 Bac0014716 Rhodomicrobium vannielii ATCC 17100 "Rhodomicrobium vannielii is a purple non-sulfur bacterium isolated in 1949, also known as NCIMB 10020. It is a budding, prosthecate bacterium that is photosynthetic under anaerobic conditions. It is able to grow with ferrous iron as electron donor, although this does not support growth over a long time. (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Rhodomicrobium Rhodomicrobium vannielii ATCC 17100 Yes 1 2 Anaerobic Photoheterotroph Mesophilic Free living No 648757 NC_014664.1 Bac0014717 Pseudofrankia inefficax Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Pseudofrankia Pseudofrankia inefficax 298654 NC_014666.1 Bac0014718 Caldicellulosiruptor kronotskyensis 2002 "Cellulolytic capability is widely distributed across the domain bacteria and extremely thermophilic cellulose-degrading microorganisms are of particular fundamental and biotechnological interest owing to the presence of highly thermostable enzymes. Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002 is a strictly anaerobic, cellulolytic, non-spore-forming, extremely thermophilic, Gram-positive bacterium isolated from a terrestrial neutral geothermal spring in Geyser Valley in the Kronotsky National Park, region of Kamchatka (Far East, Russia). Cells are short, straight rods (3-3.2 x 0.5-0.7 mm) with flagella. Temperature range for growth is between 45-82 degrees Celsius, with optimum growth at 70 degrees Celsius. The pH range for growth is between 6.0-8.0, with optimum growth at pH 7.0. It is a chemo-organoheterotroph which is capable of fermenting a wide spectrum of carbohydrates (cellulose, starch, xylan, dextran, pectin, cellobiose, glucose, fructose, sucrose, xylose, maltose, galactose, lactose, arabinose, mannitol and yeast extract). It does not grow with pyruvate, chitin, raffinose, trehalose, ribose or peptone. (Adapted from PMID: 21216991 and 18523201). (EBI Integr8)" Bacillati Bacillota Clostridia Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor kronotskyensis 2002 Positive Bacilli Yes 1 1 Anaerobic 45 heterotroph; organotroph; chemotroph Thermophilic Hot spring Free living Pairs- Singles Nonsporulating No 632348 NC_014720.1 Bac0014719 Neisseria lactamica 020-06 "The genus Neisseria, which comprises oxidase positive diplococci that colonise the mucosa of humans and animals, includes species that are never or rarely pathogenic and two human pathogens of global significance, Neisseria meningitidis and Neisseria gonorrhoeae. Neisseria lactamica is closely related to the pathogenic Neisseria and, like them, is only ever isolated from humans. N. lactamica is an obligate commensal inhabitant of the human nasopharynx that establishes long-term normally asymptomatic colonisation. Occurrence of N. lactamica is high in infants and young children and declines as the age of the human host population rises. It has been suggested that colonisation of children with N. lactamica plays a role in the development of immunity to the meningococcus, and anti-meningococcal vaccines based N. lactamica have been proposed at various times. Strain 020-06 belongs to sequence type ST-640 and was isolated from a six-week-old child from the UK in 1997. A plasmid of 3,151 bp was present in the organism but does not seem to have been submitted to the INSDC database (adapted from PMID 21092259). (EBI Integr8)" Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria lactamica ST-640 Negative Cocci No 1 2 Aerobic 35 Chemoheterotroph Mesophilic Multiple Free living Homo sapiens Pairs Nonsporulating No 489653 NC_014752.1 Bac0014720 Thermococcus barophilus MP "Thermococcus barophilus (strain DSM 11836 / MP) is an anaerobic, hyperthermophilic, mixed heterotrophic, and carboxydotrophic euryarchaeon isolated from the deep sea hydrothermal vent Snakepit site on the mid-Atlantic ridge at a depth of 3,550 m. T. barophilus is the first true piezophilic, hyperthermophilic archaeon isolated, having an optimal growth at 40 MPa. It grows from 48 degrees Celsius to 100 degrees Celsius with an optimum at 85 degrees Celsius and within a pressure range of 0.1 to 85 MPa with an optimum of 40 MPa. T. barophilus possesses the carboxydotrophic pathway, which allows it to obtain energy and carbon from the oxidation of CO, and bears seven different hydrogenase complexes. The T. barophilus specific gene set, which bears little homology to proteins in the database, may provide clues to its adaptation to growth under the high-pressure conditions which are typical of the deep biosphere. (Adapted from PMID: 21217005). (HAMAP: THEBM)" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus barophilus MP Cocci No 1 1 Anaerobic 88 Chemoheterotroph Hyperthermophilic Multiple Free living Nonsporulating No 391623 NC_014804.1 Bac0014721 Cenarchaeum symbiosum A Thermoproteati Nitrososphaerota Candidatus Cenarchaeales Candidatus Cenarchaeaceae Candidatus Cenarchaeum Candidatus Cenarchaeum symbiosum 414004 NC_014820.1 Bac0014722 Intrasporangium calvum DSM 43043 "Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) is an airborne Gram-negative bacterium isolated from under nonselective conditions on plates of meat-peptone agar exposed to the atmosphere of a school dining room (1967). The name Intrasporangium, was selected to emphasize the possibility of intercalary formation of sporangia in mycelial filaments. I. calvum forms a branching mycelium, which tends to break into irregular fragments. The mycelium may bear intercalary vesicles but does not contain spores. The vesicles are ovoid and lemon-shaped. The mycelial filaments penetrate the agar and form compact, small colonies. I. calvum is able to grow between 28 and 37 degrees Celsius, however, the cells grow faster at 37 degrees Celsius than 28 degrees Celsius, but it does not at 45 degrees Celsius. It is able to reduce nitrate to nitrite when KNO3 is added to the growth medium. One particularly interesting feature of I. calvum is that the type of its menaquinone is different from all other representatives of the family Intrasporangiaceae. (Adapted from PMID: 21304734). (HAMAP: INTC7)" Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Intrasporangium Intrasporangium calvum DSM 43043 Positive Filamentous Yes Aerobic 29 Chemoorganotroph Mesophilic Air Free living Nonsporulating 710696 NC_014830.1 Bac0014723 Thermaerobacter marianensis DSM 12885 "Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) is a strictly aerobic, thermophilic, marine Gram-positive bacterium, originally isolated from the deepest part in the western Pacific Ocean (Mariana Trench) at the depth of 10, 897 m. The cells of T. marianensis are generally rod-shaped (0.3-0.6 x 2-7 um), straight to slightly curved with rounded ends. Motility and flagella have not been observed, but genes for biosynthesis and assembly of flagella have been identified. It is typical marine bacterium and requires sea salts (0.5-5%, optimum 2%) in media for good growth. The temperature range for growth is between 50 and 80 degrees Celsius, with an optimum at 75 degrees Celsius. The pH range for growth is between 5.4-9.5, with an optimum at pH 7.0-7.5. T. marianensis utilizes carbohydrates like starch, xylan, chitin, maltose, maltotriose, cellobiose, lactose, trehalose, sucrose, glucose, galactose, xylose, mannitol, inositol. It is also able to grow on amino acids like casamino acids, valine, isoleucine, cysteine, proline, serine, threonine, asparagine, glutamine, aspartate, glutamate, lysine, arginine and histidine. T. marianensis is able to grow well on various carboxylic acids like propionate, 2-aminobutyric acid, malate, pyruvate, tartarate, succinate, lactate, acetate and glycerol (Adapted from: http://standardsingenomics.org/index.php/sigen/article/view/sigs.1373474). (EBI Integr8)" Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Thermaerobacter Thermaerobacter marianensis DSM 12885 Positive Bacilli No 1 1 Aerobic 74 Chemoheterotroph Hyperthermophilic Specialized Free living Pairs- Singles Nonsporulating No 644966 NC_014831.1 Bac0014724 Desulfurispirillum indicum S5 "Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) is a selenate-reducing Gram-negative bacterium. It is able to reduce selenate to selenite and further to insoluble elemental selenium, in a process called dissimilatory selenate reduction. The biogeochemical cycling of selenium in the environment is predominantly governed by microorganisms, which play an important role in oxidation, reduction, methylation and volatilization. Knowledge of how this process of speciation takes place is relevant to studies aimed to develop processes for removal of selenium from polluted soils, and therefore relevant to environmental science and toxicology studies. Studies of the microbial speciation of the metalloids selenium and arsenic are also fundamental to the elucidation of how their role as terminal electron acceptors currently affects geochemical cycles and to what extent this has contributed to determine the chemical composition of Earth. (Adapted from: http://genome.jgi-psf.org/selin/selin.home.html). (EBI Integr8)" Pseudomonadati Chrysiogenota Chrysiogenia Chrysiogenales Chrysiogenaceae Desulfurispirillum Desulfurispirillum indicum S5 Negative Spirilla Yes 1 2 Anaerobic 29 Mesophilic Fresh water- Sediment Free living Nonsporulating No 653733 NC_014836.1 Bac0014725 Pseudodesulfovibrio aespoeensis Aspo-2 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio aespoeensis anaerobic 643562 NC_014844.1 Bac0014726 Thermovibrio ammonificans HB-1 "Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) is a thermophilic, anaerobic, chemolithoautotrophic, Gram-negative bacterium isolated from the walls of an active deep-sea hydrothermal vent chimney on the east Pacific rise. This organism grows on mineral salts in the presence of carbon dioxide and hydrogen, reducing nitrate or sulfur to ammonium or hydrogen sulfide, respectively. The characterization of T. ammonificans is critical to understand the ecology and biogeochemistry of geothermal environments. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/49403). (EBI Integr8)" Pseudomonadati Aquificota Aquificia Desulfurobacteriales Desulfurobacteriaceae Thermovibrio Thermovibrio ammonificans HB-1 Negative Bacilli Yes 1 2 Anaerobic 75 Chemolithoautotroph Thermophilic Fresh water- Hydrothermal vent- Deep sea- Marine Free living non-spore-forming No 648996 NC_014917.1 Bac0014727 Bartonella clarridgeiae 73 "Bartonella spp are the causative agent of Carrion's disease (B. bacilliformis), trench fever (B. quintana) and, more recently, cat scratch disease (CSD) in humans (B. henselae and B. clarridgeiae). Bartonella spp have different arthropod vectors, such as fleas (Ctenocephalides felis), lice (Pediculus humanus corporis), sandflies (Lutzomyia verrucarum, Lutzomyia peruensis) and ticks (Ixodes pacificus). The main natural animal reservoirs for these bacteria are cats, dogs and rodents. Bartonella spp infect humans and can cause chronic bacteremia, which may be followed by fever, endocarditis, sepsis and neurological, psychiatric, ophthalmological, bone and hematologic manifestations, among others. The peak incidence of clinical manifestations is seen in children and young adults, aged between 2-14 years old. Approximately 24 000 cases are reported in the US each year. Bartonella clarridgeiae (strain CIP 104772 / 73) is a pleomorphic Gram-negative bacterium isolated from a case of cat scratch fever in a veterinarian who had been bitten by a cat. In both humans and domestic animals, infection may be asymptomatic and can resolve spontaneously without any treatment; however, in immunocompromized patients, more severe progress may be observed, including encephalitis, swelling of the spleen, and heart valve infection. Cats, which are infected by fleas carrying the bacteria, in turn infect humans when scratching or biting them, hence the name. The first signs and symptoms of CSD, which may appear one to two weeks after exposure, are a small red bump forms at the site of infection, followed 2-3 weeks later by a painful swelling of the lymph node. (Adapted from: 21120356 and http://www.ncbi.nlm.nih.gov/genomeprj/62727). (EBI Integr8)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella clarridgeiae Negative Bacilli Yes 1 2 Aerobic Mesophilic HostAssociated Free living cats and dogs Nonsporulating Yes 696125 NC_014932.1 Bac0014728 Cellulophaga algicola DSM 14237 "Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) is an ice-dwelling (sympagic), strictly aerobic, chemoheterotrophic Gram-negative bacterium commonly associated with marine diatoms and isolated from strips of ice algae. Cells are rod-shaped with either rounded or tapered ends. Gliding motility is present. Colonies have yellow-orange pigmentation and a compact center with a spreading edge possessing lighter pigmentation. C. algicola produces extracellular enzymes which degrade agar and other complex compounds and acid is formed oxidatively from D-galactose, D-glucose, D-fructose, sucrose, cellobiose, lactose and mannitol. It can grow between 0 and 10% NaCl, with best growth in the presence of about 2%NaCl. C. algicola grows between 2 and 28 degrees Celsius, with the most rapid growth at about 15-20 degrees Celsius on agar media and at about 20-25 degrees Celsius in liquid media. Optimal pH for growth is about 7.5. (Adapted from PMID: 11034497). (EBI Integr8)" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga algicola DSM 14237 Negative Bacilli Yes 1 2 Aerobic 15 Chemoheterotroph Mesophilic Aquatic Free living Nonsporulating No 688270 NC_014934.1 Bac0014729 Bifidobacterium longum subsp. infantis 157F "Bifidobacterium longum is an anaerobic, non-halophilic, Gram-positive bacterium that is commonly found in the intestines of humans and most animals and insects. They were first isolated and described over one hundred years ago from human feces and were quickly associated with a healthy gastrointestinal tract (GIT) due to their numerical dominance in breast fed infants compared to bottle fed infants. In the neonate their numerical advantage confers a substantial health benefit by hindering pathogen colonization through competitive exclusion. It is important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. B. longum is characterized by a unique hexose metabolism that occurs via a phosphoketolase pathway often termed the bifid shunt. Fructose-6-phosphate phosphoketolase (F6PPK) is a key enzyme of the bifid shunt and its presence is the most common diagnostic test for this genus, as it is not present in other Gram-positive intestinal bacteria. B. longum is often the dominant species detected in humans and is the only species to regularly harbor plasmids. It is a leading member of the probiotic bacteria due to numerous studies that have provided a growing body of evidence for its role in a myriad of potential health benefits. These include diarrhea prevention in antibiotic treated patients, cholesterol reduction, alleviation of lactose intolerance symptoms, immune stimulation and cancer prevention. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacterium to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Selection of suitable strains for probiotic purposes is very difficult as inherent characteristics of strains of B. longum that are necessary for its survival and competition in the human large intestine are currently very poorly understood. The use of the sequenced genome in microarray analysis reveals pertinent traits that are important to attain dominance in these complex ecosystems. (EBI Integr8)" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum 157F-NC Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Homo sapiens Clusters - Pairs - Singles Nonsporulating No 565040 NC_015053.1 Bac0014730 Microbacterium testaceum StLB037 Microbacterium testaceum strain StLB037 is an endophytic bacterium that resides within plant hosts without causing disease symptoms. It has been isolated from potato leaves and shown to degrade both short and long chain N-acyl-L-homoserine lactone (AHL) compounds. AHLs are used by many Gram-negative bacterial species as a signal compound involved in the quorum-sensing system; many of these plant pathogens produce AHLs and regulate their virulence by AHL-mediated quorum sensing. Co-inoculation of potato slices with M.testaceum and the plant pathogen Pectobacterium carotovorum subsp. carotovorum attenuated the soft rot symptoms compared to P.carotovorum subsp. carotorvorum alone (adapted from PMID 19734660). (EBI Integr8) Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium testaceum StLB037 Negative 2 HostAssociated No 979556 NC_015125.1 Bac0014731 Pseudarthrobacter phenanthrenivorans Sphe3 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter phenanthrenivorans soil 930171 NC_015145.1 Bac0014732 Sphaerochaeta globosa str. Buddy "Sphaerochaeta globosa strain Buddy is a Gram-negative, spherical microbe that exhibits strict anaerobic growth. This microorganism thrives optimally at a temperature of 29.0 °C, which may suggest a preference for mesophilic environments. The spherical morphology of S. globosa str. Buddy is consistent with its classification within the Sphaerochaeta genus, which is known for its unique structural characteristics.↵↵As an anaerobic organism, S. globosa str. Buddy is adapted to environments devoid of oxygen, likely residing in specialized niches such as sediment, decaying organic matter, or certain gastrointestinal tracts of animals where oxygen levels are minimal. The ability to thrive in such conditions may confer ecological advantages, allowing it to participate in important biochemical processes, such as the degradation of complex organic compounds and the cycling of nutrients.↵↵Understanding the specific metabolic pathways and ecological roles of S. globosa str. Buddy could provide insights into its potential contributions to anaerobic ecosystems. Furthermore, the study of this strain may enhance our knowledge of microbial interactions in anaerobic habitats and the overall dynamics of microbial communities in such environments." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta globosa Gram-negative sphere non-motile anaerobic 29 mesophilic 158189 NC_015152.1 Bac0014733 Odoribacter splanchnicus DSM 20712 Odoribacter splanchnicus DSM 20712. This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter splanchnicus DSM 20712 Negative No Anaerobic Chemoorganotroph Mesophilic HostAssociated Free living Homo sapiens Nonsporulating 709991 NC_015160.1 Bac0014734 Syntrophobotulus glycolicus DSM 8271 "Glycolate is an important constituent of fruit and sugar cane and is excreted by algae and autotrophic prokaryotes under conditions of carbon dioxide limitation and excess oxygen. While aerobic degradation of glycolate has been studied in detail, its anaerobic degradation has aroused interest only recently. Syntrophobotulus glycolicus strain FlGlyR was originally isolated from anoxic sewage sludge and later in pure culture with glyoxylate as its sole substrate. The nonmotile bacterium occurs typically as single cells or in small aggregates. Oval spores form in ageing cultures at the cell ends. While Gram staining is negative, ultrastructural analysis shows Gram-positive cell wall architecture. A strictly anaerobic bacteria, it grows chemotrophically in pure culture by fermentative oxidation of glyoxylate. Glycolate is oxidized in syntrophic coculture with, e.g., Methanospirillurn hungatei or Acetobacterium woodii as a partner. No other organic or inorganic substrates are used. Glycolic acid is converted to carbon dioxide and hydrogen in syntrophic culture; glyoxylic acid is fermented in pure culture to carbon dioxide, hydrogen, and glycolic acid. Glycolate oxidation to glyoxylate and vice versa is coupled to a membrane-bound electron transport system that catalyzes either a proton potential-driven reversed electron transport from glycolate to hydrogen or a hydrogen-dependent glyoxylate reduction coupled to ATP synthesis by electron transport phosphorylation. Does not reduce sulfate, sulfite, thiosulfate, elemental sulfur, or nitrate. Cells contain menaquinone-7-10, with MK-9 as major fraction, it contains no cytochromes. It grows in a pH range of 6.7 to 8.3 with optimum pH 7.3, its temperature growth range is 15 to 37 degrees C with an optimum of 28 degrees C. Growth optimal in freshwater medium; growth also occurs in brackish-water medium with 110 mM NaCl-5 mM MgCl(2) (adapted from PMID 88634369). (HAMAP: SYNGF)" Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Syntrophobotulus Syntrophobotulus glycolicus DSM 8271 Negative Bacilli Yes 1 1 Anaerobic 28 Chemotroph Mesophilic Aquatic Symbiotic Sporulating No 645991 NC_015172.1 Bac0014735 Desulfurobacterium thermolithotrophum DSM 11699 "Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) is a thermophilic, anaerobic, strictly autotrophic, sulphur-reducing Gram-positive bacterium isolated from a deep-sea hydrothermal chimney sample collected at the mid-Atlantic ridge. The cells occur singly or in pairs as small highly motile rods. The temperature range for growth is between 40 to 75 degrees Celsius, with an optimum at 70 degrees Celsius. The pH range for growth at 70 degrees Celsius is from 4.4 to 7.5, with an optimum around 6.0. The sea salt concentration range for growth is between 15 and 70 g/l with an optimum at 35 g/l. Elemental sulphur, thiosulphate and sulphite are reduced to hydrogen sulphide. (Adapted from PMID: 9734024). (EBI Integr8)" Pseudomonadati Aquificota Aquificia Desulfurobacteriales Desulfurobacteriaceae Desulfurobacterium Desulfurobacterium thermolithotrophum DSM 11699 Negative Bacilli No 1 1 Anaerobic 70 Autotroph Thermophilic Aquatic Free living Pairs- Singles Nonsporulating No 868864 NC_015185.1 Bac0014736 Lactobacillus amylovorus "Lactobacillus amylovorus is a Gram-positive, rod-shaped bacterium characterized by its tendency to form chains and its nonsporulating nature. This microbe is an anaerobe, thriving in environments devoid of oxygen, which suggests it has adapted to specific ecological niches where such conditions prevail. The habitat of L. amylovorus is diverse, allowing it to occupy multiple environments, although the exact details of these habitats are not specified. ↵↵Given its anaerobic requirements and chain-forming arrangement, L. amylovorus may play a significant role in various fermentation processes, particularly in environments rich in carbohydrates. This trait implies that it could be involved in the breakdown of starches and sugars, contributing to the production of lactic acid and other metabolites, which are critical in food preservation and flavor enhancement. ↵↵The ability of L. amylovorus to thrive in anaerobic conditions highlights its potential importance in maintaining the microbial balance in its habitats, whether in natural ecosystems or within engineered fermentation systems. This adaptability may also suggest a role in promoting the health of host organisms through competitive exclusion of pathogens or through the production of beneficial metabolites. Overall, the unique combination of its morphological and physiological traits positions L. amylovorus as a significant player in anaerobic microbial communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains Nonsporulating 1604 NC_015218.1 Bac0014737 Marinomonas mediterranea MMB-1 Marinomonas mediterranea MMB-1.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas mediterranea MMB-1 Negative Bacilli Yes Aerobic Chemoorganotroph Mesophilic Marine Free living Nonsporulating 717774 NC_015276.1 Bac0014738 Aerococcus sp. Group 1 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus sp. Group 1 2976812 NC_015278.1 Bac0014739 Streptococcus oralis Uo5 Streptococcus oralis Uo5.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Uo5 Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Homo sapiens Pairs - Chains Nonsporulating 927666 NC_015291.1 Bac0014740 Prevotella denticola F0289 Prevotella denticola F0289.A reference genome for the Human Microbiome Project. (NCBI BioProject: bp_list[1]) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella denticola F0289 Negative Bacilli No Anaerobic Mesophilic HostAssociated Free living Homo sapiens Nonsporulating 767031 NC_015311.1 Bac0014741 Pseudonocardia dioxanivorans CB1190 Pseudonocardia dioxanivorans CB1190. Sequencing Pseudonocardia dioxanivorans CB1190 will be useful in understanding the cellular make-up of the Pseudonocardia and will provide tools for advanced study and utilization of their vast metabolic potential. (NCBI BioProject: bp_list[1]) Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia dioxanivorans CB1190 Positive rod non-motile Aerobic 30 Mesophilic Fresh water - Sludge Free living 1847 NC_015312.1 Bac0014742 Archaeoglobus veneficus SNP6 "Archaeoglobus veneficus (strain DSM 11195 / SNP6) is an anaerobic, chemolithoautotrophic, hyperthermophilic archaeum isolated from the walls of active black smokers at the Mid-Atlantic Ridge (depth 3500 meters). It grows at temperatures between 65 and 85 degrees Celsius, with an optimum between 75 to 80 degrees Celsius at atmospheric pressure. Molecular hydrogen serves as electron donor during chemolithoautotrophic growth and H2S is formed from sulfite or thiosulfate. Alternatively, organic acids, glucose, or ethanol can be used as electron donors, but sulfate, nitrate, or nitrite can not serve as electron acceptors and elemental sulfur inhibits growth. A.veneficus shows a blue-green fluorescence at 436 nm and produced small amounts of methane. (Adapted from: http://cat.inist.fr/?aModele=afficheN&cpsidt=2787925). (HAMAP: ARCVS)" Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus veneficus SNP6 Cocci Yes 1 1 Anaerobic Chemolithoautotroph Hyperthermophilic Aquatic Free living No 693661 NC_015320.1 Bac0014743 Candidatus Pelagibacter sp. IMCC9063 Genomic DNA from Strain IMCC9063 from SAR11 group 3 isolated from an Arctic Envirionment. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Candidatus Pelagibacter Candidatus Pelagibacter sp. IMCC9063 IMCC9063 Negative Bacilli Aerobic Mesophilic Marine Free living 1002672 NC_015380.1 Bac0014744 Desulfobacca acetoxidans DSM 11109 "Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) is an anaerobic, mesophilic, sulfate reducer, Gram-negative bacterium isolated from granular sludge of a laboratory-scale upflow anaerobic sludge bed reactor fed with acetate (as sole carbon and energy source) and sulfate. The bacterium is oval-shaped, 1.3 x 1.9-2.2 microns.The optimum growth with acetate occurs around 37 degrees Celsius in freshwater medium. Enzyme studies indicates that acetate is oxidized via the carbon monoxide dehydrogenase pathway. Growth is not supported by other organic acids, such as propionate, butyrate or lactate, alcohols such as ethanol or propanol, and hydrogen or formate. Sulfite and thiosulfate are also used as electron acceptors, but sulfur and nitrate are not reduced. Sulfate-reducing bacteria play an important role in the degradation of organic matter in anaerobic bioreactors treating sulfate-rich wastewaters, such as those from paper mills, tanneries or food oil industry. (Adapted from PMID: 10319454). (EBI Integr8)" Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales Desulfobaccaceae Desulfobacca Desulfobacca acetoxidans DSM 11109 Negative No 1 2 Anaerobic Organoheterotroph Mesophilic Fresh water- Sludge Free living Pairs Nonsporulating No 880072 NC_015388.1 Bac0014745 Carnobacterium sp. 17-4 Project description not provided. (NCBI BioProject: bp_list[1]) Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium sp. 17-4 17-Apr Mesophilic Marine- Sea water 208596 NC_015391.1 Bac0014746 Mycoplasma mycoides subsp. capri LC str. 95010 "Mycoplasma is a genus of small bacteria which lack cell walls. Mycoplasma m. spp. mycoides is best known as the cause of bovine contagious pleuropneumonia (CBPP), a highly destructive disease in bovine cattle that is the only bacterial disease included in the World Organization for Animal Health's A-list of prioritized communicable animal diseases.CBPP is predominantly a disease of the genus Bos; both bovine and zebu cattle are naturally infected. There are many reported breed differences with respect to susceptibility. In general, European breeds tend to be more susceptible than indigenous African breeds. In zoos the infection has been recorded in bison and yak and it has also been known to cause severe disease in goats.CBPP is endemic in most of Africa. It is a problem in parts of Asia, especially India and China. Periodically, CBPP occurs in Europe, and outbreaks within the last decade have occurred in Spain, Portugal, and Italy. Contagious bovine pleuropneumonia was eradicated from the United States in the nineteenth century.The clinical symptoms of acute CBPP involve respiratory distress, cough, cessation of rumination, anorexia, and severe pleuritic pain. The disease is spread by inhalation of droplets from an infected, coughing animal. Consequently, relatively close contact is required for transmission to occur. Outbreaks usually begin as the result of movement of an infected animal into a naive herd. The mortality rate is quite varied and ranges from 10 to 70 percent.Mycoplasma m. spp. mycoides is the first bacterium that causes a severe disease in livestock whose genome has been sequenced. Knowledge of this genome sequence will help facilitate the development of new vaccines, drugs, and diagnostic tools for CBPP. Because this is the first genome that has been sequenced in the Spiroplasma group of the mollicutes, it will serve as a good complement to the five previously published mollicute genomes for the study of the evolution of the mollicutes. (M genitalium, M. pneumoniae, Ureaplasma parvum (formerly Ureaplasma urealyticum) and M. penetrans.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides 95010 Positive No 1 1 Facultative Mesophilic HostAssociated Free living Singles Nonsporulating No? 862259 NC_015431.1 Bac0014747 Gallibacterium anatis UMN179 (NCBI BioProject: PRJNA66567) Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis UMN179 Gallus gallus 1005058 NC_015460.1 Bac0014748 Dokdonia sp. 4H-3-7-5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia sp. 4H-3-7-5 983548 NC_015496.1 Bac0014749 Acidianus hospitalis W1 (no description provided) (NCBI BioProject: bp_list[1]) Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus hospitalis W1 No Facultative Lithotroph Thermophilic Fresh water Free living 933801 NC_015518.1 Bac0014750 Hoyosella subflava DQS3-9A1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Hoyosellaceae Hoyosella Hoyosella subflava 443218 NC_015561.1 Bac0014751 Desulfotomaculum nigrificans CO-1-SRB "Desulfotomaculum nigrificans CO-1-SRB is a Gram-positive, rod-shaped, spore-forming bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 45.0°C. This organism is part of the sulfate-reducing bacteria group, which plays a crucial role in the biogeochemical cycling of sulfur in various anaerobic environments. Its ability to form spores suggests a mechanism for surviving unfavorable conditions, enabling it to endure periods of nutrient scarcity or adverse environmental changes.↵↵The preference for elevated temperatures indicates that D. nigrificans CO-1-SRB may inhabit geothermal or thermophilic environments, where it contributes to the degradation of organic matter and the reduction of sulfate to sulfide. This metabolic activity not only influences the sulfur cycle but also has implications for the overall ecosystem dynamics in its native habitat, potentially affecting the availability of nutrients and the composition of microbial communities.↵↵Furthermore, the anaerobic nature of this bacterium implies that it may play a vital role in environments devoid of oxygen, such as deep-sea sediments, marshlands, or anaerobic digesters, where it can interact with other microbial populations. The study of D. nigrificans CO-1-SRB may provide insights into the evolutionary adaptations of microorganisms to extreme conditions and their functional contributions to ecosystem resilience and stability." Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Desulfotomaculum Desulfotomaculum nigrificans Gram-positive rod motile anaerobic 45 thermophilic spore-forming 868595 NC_015565.1 Bac0014752 Methanobacterium paludis Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium paludis 868131 NC_015574.1 Bac0014753 Treponema primitia ZAS-2 Treponema primitia ZAS-2. Treponema primitia ZAS-2 will be used for comparative analysis with other insect symbionts. (NCBI BioProject: bp_list[1]) Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema primitia ZAS-2 Negative Spirilla No Anaerobic Mesophilic HostAssociated Symbiotic Termite Singles Nonsporulating 545694 NC_015578.1 Bac0014754 Isoptericola variabilis 225 Isoptericola variabilis 225.Project description not provided (NCBI BioProject: bp_list[1]) Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Isoptericola Isoptericola variabilis 225 Positive Bacilli No Facultative 29 mesophilic HostAssociated Australian termite Mastotermes darwiniensis. 743718 NC_015588.1 Bac0014755 Methanothermococcus okinawensis IH1 Methanothermococcus okinawensis IH1.This genome will be used for comparative analysis of the thermophilic methanococci. (NCBI BioProject: bp_list[1]) Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanothermococcus Methanothermococcus okinawensis IH1 Cocci Yes Anaerobic 60 Lithotroph- Autotroph Thermophilic Fresh water- Deep sea- Hydrothermal vent Free living 647113 NC_015632.1 Bac0014756 Heyndrickxia coagulans 2-6 "Heyndrickxia coagulans 2-6 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This microbe displays a chemoheterotrophic lifestyle, utilizing organic compounds as its energy source. It thrives optimally at a temperature of 60°C, indicating a preference for thermophilic conditions, which may influence its habitat selection. Heyndrickxia coagulans 2-6 can be found in multiple environments, suggesting a versatile ecological niche that may include thermally altered habitats, such as hot springs or composting materials, where organic matter is abundant.↵↵The sporulating capability of this bacterium allows it to survive in fluctuating environmental conditions, enhancing its resilience and potential for colonization in diverse habitats. The facultative anaerobic nature of Heyndrickxia coagulans 2-6 further implies its ability to adapt to varying oxygen levels, which is advantageous for survival in complex ecological settings. ↵↵The combination of these traits suggests that Heyndrickxia coagulans 2-6 plays a significant role in organic matter degradation, contributing to nutrient cycling in its habitats. Its thermophilic and sporulating characteristics may also position it as a candidate for biotechnological applications, particularly in processes involving high-temperature organic waste treatment or bioremediation strategies aimed at optimizing decomposition in extreme environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia coagulans Positive Rod Yes 1 Facultative anaerobe 60 Chemoheterotroph Mesophilic Multiple Sporulating 941639 NC_015634.1 Bac0014757 Candidatus Protofrankia datiscae Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Protofrankia Candidatus Protofrankia datiscae 2716812 NC_015656.1 Bac0014758 Helicobacter bizzozeronii CIII-1 This genome will be used for comparative analysis. (NCBI BioProject: bp_list[1]) Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter bizzozeronii CIII-1 Negative Homo sapiens 1002804 NC_015670.1 Bac0014759 Cellulomonas gilvus ATCC 13127 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas gilvus 593907 NC_015671.1 Bac0014760 Methanosalsum zhilinae DSM 4017 Methanosalsum zhilinae DSM 4017. This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1]) Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosalsum Methanosalsum zhilinae DSM 4017 No Anaerobic Methylotroph Mesophilic Specialized Free living 679901 NC_015676.1 Bac0014761 Pyrococcus yayanosii CH1 Pyrococcus yayanosii CH1.This strain will be used for comparative genome analysis. (NCBI BioProject: bp_list[1]) Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus yayanosii CH1 Cocci Yes Obligate anaerobic Hyperthermophilic Hydrothermal vent- Marine Free living Nonsporulating 529709 NC_015680.1 Bac0014762 Paenibacillus mucilaginosus KNP414 "Paenibacillus mucilaginosus strain KNP414 kept in the laboratory of Institute of Bioengineering, College of Life Sciences, Zhejiang Sci-Tech University.Paenibacillus mucilaginosus is critical silicate bacteria in the biogeochemical cycling of potassium, phosphorus, and other soil elements, and is widely used in agriculture, bioleaching, and wastewater treatment. P. mucilaginosus is able to degrade insoluble soil minerals with the release of nutritional ions and fix nitrogen, and thus it has been successfully used as a biofertilizer since the 1990s. The exocellular polysaccharides produced by P. mucilaginosus is also an effective bioflocculant, and thus plays a potential role in the treatment of wastewater and biohydrometallurgy. (NCBI BioProject: bp_list[1])" Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus mucilaginosus KNP414/soil Bacilli Mesophilic Free living Sporulating 1036673 NC_015690.1 Bac0014763 Parachlamydia acanthamoebae UV-7 Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae 765952 NC_015702.1 Bac0014764 Corallococcus macrosporus Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus 35 NC_015711.1 Bac0014765 Nitrosomonas sp. Is79A3 Nitrosomonas sp. Is79A3. Project description not provided. (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Is79A3 Is79A3 Negative Yes Aerobic Oligotroph- Lithotroph Mesophilic Fresh water Free living 261292 NC_015731.1 Bac0014766 Pseudomonas putida S16 "Pseudomonas putida is a gram-negative bacteria with rod-shaped cells and multitrichous flagella, it is one of nature's most versatile microbes.This soil bacterium has the potential to help clean up organic pollutants as it is a unique soil microorganism, which can resist the adverse effects of these organic solvents.P. putida has the most genes of any known species involved in breaking down aromatic hydrocarbons, like TNT. Aromatic hydrocarbons are hazardous chemicals generated by the burning of coal, gas, tobacco, meat and other organic matter.The petroleum industry is investigating P. putida as a cheap means of purifying fuel, while the pathogen's resistance to antibiotics is allowing crop scientists to study its ability to protect plants from pests and help them grow.The newly sequenced genome may benefit research on cystic fibrosis. Pseudomonas putida is closely related to Pseudomonas aeruginosa (which was sequenced in 2000), the leading infectious killer of persons with this disease. The bacteria have similar genomes but P. putida lacks certain genes that make P. aeruginos an efficient pathogen, including those for enzymes that digest cell membranes.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida strain Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating No 1042876 NC_015733.1 Bac0014767 Candidatus Moranella endobia PCIT This strain was isolated from a dissected bacteriome from the mealybug Planococcus citri (Risso). (NCBI BioProject: bp_list[1]) Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Moranella Candidatus Moranella endobia PCIT Negative Symbiotic Planococcus citri 903503 NC_015735.1 Bac0014768 Salmonella bongori NCTC 12419 "Salmonella. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. There are now two Salmonella species, Salmonella bongori and Salmonella enterica. Certain serovars of Salmonella enterica are responsible for more serious diseases such as Typhoid fever.The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.Salmonella bongori. Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. (NCBI BioProject: PRJNA35217)" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella bongori NCTC 12419 Negative Bacilli Yes Facultative Chemoorganotroph Mesophilic HostAssociated Free living Pairs- Singles Nonsporulating 218493 NC_015761.1 Bac0014769 Methanococcus maripaludis X1 "Methanococcus maripaludis X1 is a coccoid archaeon that typically exists as single cells and thrives in aquatic environments. This organism is a lithotrophic anaerobe, relying on inorganic compounds for energy, which aligns with its ecological niche in anaerobic aquatic habitats. The optimal growth temperature for M. maripaludis X1 is approximately 35.0°C, suggesting a preference for moderately warm conditions often found in various natural water bodies.↵↵As a member of the methanogenic Archaea, M. maripaludis X1 plays a critical role in the carbon cycle, particularly in the anaerobic decomposition of organic matter. Its metabolic pathways contribute significantly to methane production, which can influence local and global carbon dynamics. In addition, the organism's lithotrophic lifestyle may allow it to exploit a variety of substrates, potentially enhancing its adaptability to fluctuating environmental conditions.↵↵The unique combination of traits exhibited by Methanococcus maripaludis X1 not only underscores its importance in anaerobic ecosystems but also highlights its potential applications in biotechnological processes aimed at methane production or bioremediation of anaerobic environments. Understanding the physiological capabilities of this archaeon may provide insights into the broader ecological functions of methanogens in aquatic systems." Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis Cocci No 1 1 Anaerobe 35 Lithotroph Mesophilic Aquatic Free living Singles 1053692 NC_015847.1 Bac0014770 Collimonas fungivorans Ter331 (NCBI BioProject: PRJNA70793) Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas fungivorans Ter331 Soil 1005048 NC_015856.1 Bac0014771 Corynebacterium variabile DSM 44702 Corynebacterium variabile DSM 44702.No description available. (NCBI BioProject: bp_list[1]) Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium variabile DSM 44702 Positive Bacilli No Aerobic 25 Chemoorganotroph Mesophilic Normal microflora- Soil Free living Pairs- Singles- Clusters Nonsporulating 858619 NC_015859.1 Bac0014772 Thermococcus sp. 4557 (NCBI BioProject: PRJNA70841) Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 4557 4557 Obligate anaerobic Hyperthermophilic 1042877 NC_015865.1 Bac0014773 Streptococcus pseudopneumoniae IS7493 (NCBI BioProject: PRJNA71153) Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae Positive HostAssociated Homo sapiens 1054460 NC_015875.1 Bac0014774 Candidatus Arthromitus sp. SFB-mouse-Japan (NCBI BioProject: PRJDA66727) Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Candidatus Neoarthromitus Candidatus Arthromitus sp. SFB-mouse sp. SFB-mouse-Japan Negative Mus musculus 1029718 NC_015913.1 Bac0014775 Pyrolobus fumarii 1A Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Pyrodictiaceae Pyrolobus Pyrolobus fumarii 694429 NC_015931.1 Bac0014776 Candidatus Arthromitus sp. SFB-rat-Yit Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Candidatus Neoarthromitus Candidatus Arthromitus sp. SFB-rat-Yit 1041504 NC_016012.1 Bac0014777 Oscillibacter valericigenes Sjm18-20 "Oscillibacter valericigenes Sjm18-20 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which suggests a reliance on stable environmental conditions for survival and proliferation. Oscillibacter species are often associated with the fermentation of carbohydrates, and the metabolic pathways of O. valericigenes may contribute to the breakdown of organic matter in its habitat.↵↵The anaerobic requirement of Oscillibacter valericigenes Sjm18-20 implies that it plays a significant role in anaerobic ecosystems, such as the gastrointestinal tracts of animals or in various sediment environments, where it could be involved in the degradation of complex organic compounds. This trait could potentially position the bacterium as a contributor to biogeochemical cycling, particularly in the conversion of organic material into simpler compounds, which are essential for nutrient recycling in anoxic conditions.↵↵Understanding the metabolic capabilities and ecological niches of O. valericigenes Sjm18-20 may provide insights into its role in maintaining microbial community dynamics and its potential applications in biotechnology, particularly in processes that exploit anaerobic fermentation pathways. Further exploration of its metabolic pathways could elucidate its contributions to ecosystem functions, particularly in environments rich in organic waste." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillibacter Oscillibacter valericigenes Gram-negative rod anaerobic 29 mesophilic non-spore-forming 693746 NC_016046.1 Bac0014778 Tetragenococcus halophilus NBRC 12172 "Tetragenococcus halophilus NBRC 12172 is a halophilic cocci-shaped bacterium that thrives in high-salinity environments. This microbe is part of the genus Tetragenococcus, which is characterized by its ability to tolerate and adapt to extreme saline conditions. Tetragenococcus halophilus has been isolated from environments such as salt-fermented foods, highlighting its role in fermentation processes within saline ecosystems.↵↵The cocci morphology of T. halophilus suggests a spherical shape, which is typical of many members of the family Micrococcaceae. This structural trait may contribute to its survival in high osmotic pressure environments, where maintaining cellular integrity is crucial. The presence of Tetragenococcus halophilus in fermented products indicates its potential utility in food biotechnology, particularly in the development of flavors and preservation techniques associated with salt-rich substrates.↵↵Moreover, the adaptation mechanisms of T. halophilus to extreme salinity not only enable its survival but may also influence microbial community dynamics in salt-rich habitats. Understanding the physiological and metabolic pathways of this organism could provide insights into microbial resilience and adaptation strategies in environments characterized by high salt concentrations. This knowledge is essential for both ecological studies and industrial applications, particularly in the context of sustainable food production and preservation methods." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus halophilus Cocci 945021 NC_016052.1 Bac0014779 Thermoproteus tenax Kra 1 Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Thermoproteus Thermoproteus tenax 768679 NC_016070.1 Bac0014780 Methylotuvimicrobium alcaliphilum 20Z Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylotuvimicrobium Methylotuvimicrobium alcaliphilum 1091494 NC_016112.1 Bac0014781 Thermovirga lienii DSM 17291 "Thermovirga lienii DSM 17291 is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 45.0°C and is strictly anaerobic. This thermophilic microbe is characterized by its inability to form spores, which may influence its survival strategies in high-temperature environments. ↵↵The anaerobic growth requirement suggests that T. lienii may play a significant role in anaerobic ecosystems, particularly in thermophilic environments such as hot springs or deep-sea hydrothermal vents, where oxygen levels are minimal. The organism's thermal preferences indicate its adaptation to extreme conditions, which could be of interest for biotechnological applications, particularly in processes that require high-temperature conditions. ↵↵Given its specific growth requirements and environmental preferences, Thermovirga lienii may contribute to the biogeochemical cycling of organic matter in its native habitats, potentially influencing microbial community dynamics and nutrient availability in these ecosystems. Understanding the metabolic pathways and ecological functions of such thermophilic anaerobes could provide insights into microbial life in extreme environments and their roles in biotechnological applications." Thermotogati Synergistota Synergistia Synergistales Thermovirgaceae Thermovirga Thermovirga lienii Gram-negative rod anaerobic 45 thermophilic non-spore-forming 580340 NC_016148.1 Bac0014782 Flavobacterium columnare ATCC 49512 "Flavobacterium columnare ATCC 49512 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, chemoheterotrophic organism. This species is known to inhabit a variety of environments, indicative of its versatility and adaptability. As a chemoheterotroph, F. columnare relies on organic compounds for energy and carbon, which suggests its potential role in nutrient cycling within its habitats.↵↵The filamentous morphology of F. columnare, combined with its ecological adaptability, allows it to thrive in diverse environments, potentially including aquatic systems where organic matter is abundant. Its Gram-negative cell structure may confer advantages in resisting certain environmental stresses, such as predation by protozoa or competition with other microbial populations.↵↵Research surrounding F. columnare has indicated its presence in various ecological niches, which underscores its role in the microbial community dynamics. The organism's ability to utilize a range of organic substrates may also suggest its involvement in decomposition processes and nutrient recycling, contributing to the overall health of the ecosystems it inhabits. This functional flexibility highlights the ecological significance of Flavobacterium columnare within its environments, warranting further investigation into its interactions within microbial communities and its potential applications in biotechnological or environmental contexts." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium columnare Negative Rod Yes 1 Chemoheterotroph Mesophilic Multiple Nonsporulating 1041826 NC_016510.2 Bac0014783 Enterobacter ludwigii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter ludwigii bat guano 299767 NC_016515.1 Bac0014784 Azospirillum lipoferum 4B Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum lipoferum 862719 NC_016586.1 Bac0014785 Burkholderia sp. YI23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. YI23 1097668 NC_016589.1 Bac0014786 Geobacillus thermoleovorans CCB_US3_UF5 "Geobacillus thermoleovorans CCB_US3_UF5 is a rod-shaped bacterium belonging to the genus Geobacillus, which is known for its ability to thrive at elevated temperatures. This thermophilic organism exhibits characteristics typical of its genus, including a preference for high-temperature environments. Its rod shape is a common morphological feature among many bacteria, facilitating various ecological interactions and adaptations.↵↵As a member of the Geobacillus species, G. thermoleovorans CCB_US3_UF5 is likely to possess heat-stable enzymes, which can be advantageous for biotechnological applications, particularly in processes that require high temperatures, such as industrial fermentation and bioremediation. The robustness of this strain in extreme conditions may also reflect its potential for contributing to natural biogeochemical cycles, particularly in thermally influenced ecosystems.↵↵Moreover, the study of G. thermoleovorans CCB_US3_UF5 can provide insights into microbial life in geothermal environments, where temperature extremes select for organisms with unique metabolic pathways and survival strategies. Understanding the physiological and biochemical properties of this strain could enhance our knowledge of microbial diversity and adaptation in extreme habitats, paving the way for novel applications in biotechnology and environmental science." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus thermoleovorans Rod 1111068 NC_016593.1 Bac0014787 Owenweeksia hongkongensis DSM 17368 "Owenweeksia hongkongensis DSM 17368 is a Gram-negative, aerobic, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This organism is characterized by its distinctive rod morphology, which is typical of many members within the broader diversity of Gram-negative bacteria. The aerobic nature of O. hongkongensis suggests its reliance on oxygen for metabolic processes, indicating potential adaptations to oxygen-rich environments.↵↵As a non-spore-forming microbe, O. hongkongensis may exhibit sensitivity to environmental stressors that would otherwise be mitigated by sporulation, a trait commonly found in other bacterial taxa. This feature may influence its ecological niche and survival strategies in its native habitat, potentially aligning with environments that provide stable conditions conducive to aerobic metabolism.↵↵Given its optimal growth temperature, O. hongkongensis may be particularly well-suited to environments that experience mild climatic conditions, such as those found in subtropical regions. The presence of this bacterium in such habitats could suggest its role in nutrient cycling or interactions with other microbial communities, although specific ecological interactions remain to be elucidated. Overall, the traits of Owenweeksia hongkongensis reflect adaptations that likely allow it to thrive in specialized niches within its ecological landscape." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Owenweeksiaceae Owenweeksia Owenweeksia hongkongensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 926562 NC_016599.1 Bac0014788 Tannerella forsythia 92A2 "Tannerella forsythia 92A2 is a Gram-negative, anaerobic bacterium that is part of the human oral microbiome. This microbe is notable for its strict anaerobic metabolism, meaning it thrives in environments devoid of oxygen. The Gram-negative nature of T. forsythia 92A2 suggests the presence of an outer membrane containing lipopolysaccharides, which can influence its interactions with the host and contribute to its survival in the oral cavity.↵↵As an anaerobe, T. forsythia relies on fermentation processes to generate energy, utilizing organic compounds available in its environment. This characteristic is significant in understanding its role within the complex community of oral bacteria, where it may compete with other microbial species for nutrients and space. The anaerobic lifestyle of T. forsythia enables it to inhabit niches that are inaccessible to aerobic organisms, thereby contributing to the microbial diversity of the oral ecosystem.↵↵Furthermore, the presence of T. forsythia in the oral cavity underscores the importance of anaerobic bacteria in maintaining oral health and disease dynamics. Its ability to thrive in low-oxygen environments highlights the complexity of microbial interactions within biofilms, particularly in conditions that favor the growth of anaerobes over aerobes. Understanding the ecological role of T. forsythia may provide insights into the balance of microbial communities and their impact on oral health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella forsythia Negative Anaerobe 203275 NC_016610.1 Bac0014789 Acetivibrio clariflavus DSM 19732 Bacillati Bacillota Clostridia Acetivibrionales Acetivibrionaceae Acetivibrio Acetivibrio clariflavus 720554 NC_016627.1 Bac0014790 Marinitoga piezophila KA3 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Marinitoga Marinitoga piezophila anaerobic 443254 NC_016748.1 Bac0014791 Bacteroides fragilis 638R "Bacteroides fragilis 638R is a Gram-negative, rod-shaped bacterium that primarily exists as single cells and thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a chemoorganotroph, this microbe derives its energy from organic compounds, which aligns with its habitat as a host-associated organism, often found in the intestinal microbiota of humans and other animals. ↵↵Bacteroides fragilis species are known for their significant role in the gut microbiome, where they contribute to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are crucial for gut health and host metabolism. The ability of B. fragilis 638R to survive in the oxygen-deprived conditions of the gut underscores its adaptation to a niche that is essential for maintaining a balanced microbiome. Understanding the metabolic profiles and ecological roles of bacteria like B. fragilis 638R can provide insights into their contributions to host health and the potential implications of dysbiosis in various diseases." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 862962 NC_016776.1 Bac0014792 Pseudodesulfovibrio mercurii Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio mercurii 641491 NC_016803.1 Bac0014793 Rahnella aquatilis CIP 78.65 = ATCC 33071 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rahnella Rahnella aquatilis 745277 NC_016818.1 Bac0014794 Salmonella enterica subsp. enterica serovar Typhimurium str. "Salmonella enterica subsp. enterica serovar Typhimurium str. is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and ability to form chains or exist as single cells. This strain thrives optimally at 37.0°C, which coincides with the average body temperature of many warm-blooded hosts, highlighting its adaptation to a host-associated habitat. As a chemoorganotroph, S. Typhimurium utilizes organic compounds as its energy source, further indicating its reliance on host environments for nutrient acquisition.↵↵The microaerophilic nature of S. Typhimurium suggests that it requires reduced levels of oxygen for growth, which may enhance its survival and proliferation within specific niches in the gastrointestinal tracts of its hosts. This trait is particularly relevant in understanding its ecological role in microbial communities associated with the intestinal flora, where competition for resources is intense. ↵↵The chain-forming ability of S. Typhimurium could also facilitate its colonization and persistence in host environments, as these arrangements may enhance cell-to-cell interactions or biofilm formation under certain conditions. Overall, the characteristics of S. enterica subsp. enterica serovar Typhimurium str. underscore its adaptation to a microaerophilic lifestyle within host-associated habitats, contributing to its ecological role in the gut microbiome and interactions with host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NC_016858.1 Bac0014795 Sulfobacillus acidophilus DSM 10332 Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Sulfobacillus Sulfobacillus acidophilus 679936 NC_016884.1 Bac0014796 Pyrobaculum oguniense TE7 Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum oguniense 698757 NC_016885.1 Bac0014797 Rickettsia philipii str. 364D Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia philipii 481009 NC_016930.1 Bac0014798 Rickettsia massiliae str. AZT80 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia massiliae 1105112 NC_016931.1 Bac0014799 Paenibacillus mucilaginosus 3016 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus mucilaginosus 1116391 NC_016935.1 Bac0014800 Blastococcus saxobsidens DD2 "Blastococcus saxobsidens DD2 is a Gram-positive, spherical bacterium that demonstrates an aerobic metabolism, thriving optimally at a temperature of 32.0 °C. This organism is characterized by its spherical morphology, which is typical of many members within the genus Blastococcus. As a Gram-positive microbe, B. saxobsidens DD2 possesses a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and potentially impacting its interactions with the surrounding environment.↵↵The preference for aerobic conditions indicates that B. saxobsidens DD2 relies on oxygen for its metabolic processes, which may influence its habitat selection and ecological role. While the specific ecological niche of this bacterium remains to be fully elucidated, its optimal growth temperature suggests it may inhabit moderately warm environments, possibly in soil or on surfaces where organic material is decomposing.↵↵Understanding the physiological traits of Blastococcus saxobsidens DD2 provides insights into its potential roles in nutrient cycling and its interactions with other microorganisms in its environment. The bacterium's aerobic nature and optimal growth temperature may also offer clues about its adaptability to specific ecological conditions, potentially serving as a model organism for studying microbial responses to temperature fluctuations in terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus saxobsidens Gram-positive sphere aerobic 32 mesophilic 1146883 NC_016943.1 Bac0014801 Mycobacterium intracellulare ATCC 13950 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 487521 NC_016946.1 Bac0014802 Streptomyces hygroscopicus subsp. jinggangensis 5008 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hygroscopicus 1133850 NC_016972.1 Bac0014803 Frateuria aurantia DSM 6220 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Frateuria Frateuria aurantia 767434 NC_017033.1 Bac0014804 Rickettsia montanensis str. OSU 85-930 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia montanensis 1105114 NC_017043.1 Bac0014805 Riemerella anatipestifer ATCC 11845 = DSM 15868 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella anatipestifer 693978 NC_017045.1 Bac0014806 Rahnella aquatilis HX2 "Rahnella aquatilis HX2 is a Gram-negative bacterium characterized by its aquatic habitat preference. This microbe is part of the wider genus Rahnella, which is known for its presence in various aquatic environments. The Gram-negative nature of R. aquatilis HX2 suggests a thinner peptidoglycan layer in its cell wall, which is typical of this group and can affect its susceptibility to certain antibiotics and its interaction with other microorganisms.↵↵Rahnella aquatilis HX2 has garnered interest due to its potential role in biogeochemical cycles within aquatic ecosystems. As a member of the diverse microbial communities found in water bodies, this bacterium may contribute to nutrient cycling, particularly in the degradation of organic matter. Understanding the physiological and ecological roles of R. aquatilis HX2 could provide insights into the dynamics of microbial communities in freshwater environments and their responses to environmental changes.↵↵Furthermore, its adaptation to aquatic habitats may offer clues regarding the evolutionary strategies employed by bacteria to thrive in variable conditions. Thus, R. aquatilis HX2 serves as a representative of the ecological complexity and functional diversity present in aquatic microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rahnella Rahnella aquatilis negative 1151116 NC_017047.1 Bac0014807 Pararhodospirillum photometricum DSM 122 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Pararhodospirillum Pararhodospirillum photometricum anaerobic 1150469 NC_017059.1 Bac0014808 Helicobacter pylori ELS37 "Helicobacter pylori ELS37 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe exhibits optimal growth at 37.0°C, a temperature that aligns with its adaptation to host-associated environments. As a microaerophilic organism, H. pylori ELS37 requires reduced levels of oxygen for its metabolic processes, which is typical for many members of this genus that inhabit the gastric mucosa of their hosts.↵↵The microbe's morphology and growth conditions suggest a specialized adaptation to the gastrointestinal tract, where it can evade the host's immune response while thriving in the unique microenvironment of the stomach. The single-cell arrangement may facilitate its survival strategies, allowing it to navigate the complex interactions within the host's microbiome.↵↵Understanding the growth and survival characteristics of H. pylori ELS37 in a microaerophilic habitat can provide insights into its ecological role within the gastric ecosystem, potentially influencing the dynamics of host-microbe interactions and the overall health of the host organism. Further research into this strain may elucidate its specific interactions with the gastric environment and its implications for host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1055527 NC_017064.1 Bac0014809 Caldilinea aerophila DSM 14535 = NBRC 104270 Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila anaerobic 926550 NC_017079.1 Bac0014810 Actinoplanes missouriensis 431 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes missouriensis aerobic 29 mesophilic spore-forming 512565 NC_017093.1 Bac0014811 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 "Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This organism thrives at an optimal temperature of 60.0°C, reflecting its adaptation to thermophilic environments. As a chemoorganotroph, A. acidocaldarius Tc-4-1 utilizes organic compounds as an energy source, which is consistent with its presence in specialized habitats where organic materials are available.↵↵This bacterium is strictly aerobic, requiring oxygen for its metabolic processes, which may limit its distribution to environments where oxygen is present. The ability to thrive in high-temperature settings suggests potential applications in biotechnology, particularly in processes that require heat-stable enzymes, as well as in the study of thermophilic microbial communities.↵↵The specialized habitat of A. acidocaldarius Tc-4-1 may include environments such as hot springs or acidic geothermal areas, where its unique physiological traits enable it to outcompete other microorganisms. Understanding the specific ecological niches occupied by this strain could provide insights into microbial survival strategies under extreme conditions, highlighting the adaptability of life in harsh environments." Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus acidocaldarius Positive Rod Yes 1 1 Aerobe 60 Chemoorganotroph Thermophilic Specialized Free living Chains 1048834 NC_017167.1 Bac0014812 Amycolatopsis mediterranei S699 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis mediterranei 713604 NC_017186.1 Bac0014813 Aliarcobacter butzleri ED-1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri 944546 NC_017187.1 Bac0014814 Arcobacter sp. L Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. L 944547 NC_017192.1 Bac0014815 Bacillus subtilis subsp. natto BEST195 "Bacillus subtilis subsp. natto BEST195 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to withstand adverse environmental conditions. This subspecies thrives optimally at a temperature of 25.0 degrees Celsius and is classified as facultatively anaerobic, indicating its versatility in utilizing both aerobic and anaerobic metabolic pathways.↵↵Bacillus subtilis subsp. natto BEST195 is primarily host-associated, suggesting a potential symbiotic relationship with its host organisms, which may offer advantages such as enhanced nutrient absorption or protection against pathogens. The capability of this strain to form spores is particularly noteworthy, as it plays a critical role in its survival strategy, facilitating persistence in fluctuating environments and contributing to its ecological adaptability.↵↵In the context of food science, this bacterium is well-known for its application in the fermentation of soybeans into natto, a traditional Japanese food. This fermentation process not only enhances the nutritional profile of soybeans but also contributes beneficial microorganisms to the human gut microbiome. The unique traits of Bacillus subtilis subsp. natto BEST195 exemplify its significant role in both ecological interactions and food production, highlighting the importance of microbial diversity in sustainable practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 645657 NC_017194.1 Bac0014816 Bacillus thuringiensis serovar finitimus YBT-020 "Bacillus thuringiensis serovar finitimus YBT-020 is a Gram-positive, rod-shaped bacterium that is capable of sporulation and exhibits facultative anaerobic metabolism. As a sporulating organism, it can form resilient spores that allow it to survive in various environmental conditions, particularly those associated with host environments. This characteristic is significant for its persistence and potential activity in specific ecological niches.↵↵The habitat of Bacillus thuringiensis serovar finitimus YBT-020 is notably host-associated, suggesting that it may interact closely with host organisms, potentially influencing or altering the microbial communities present in those environments. Its facultative anaerobic nature indicates that it can thrive in both aerobic and anaerobic conditions, which may provide it with a competitive advantage in diverse habitats where oxygen availability fluctuates.↵↵This adaptability not only reflects its ecological versatility but also hints at its potential roles in biogeochemical cycles within host-associated microbiomes. Understanding the interactions of B. thuringiensis serovar finitimus YBT-020 with its hosts and surrounding microbial communities could yield insights into the dynamics of microbial ecology and the roles of such bacteria in nutrient cycling and biological control processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 930170 NC_017199.1 Bac0014817 Bradyrhizobium japonicum USDA 6 "Bradyrhizobium japonicum USDA 6 is a Gram-negative bacterium primarily found in soil environments. This microbe is notable for its symbiotic relationship with leguminous plants, particularly soybeans, where it plays a crucial role in nitrogen fixation. By converting atmospheric nitrogen into a form that can be assimilated by plants, B. japonicum USDA 6 contributes to soil fertility and enhances agricultural productivity.↵↵The species is characterized by its slow growth rate and ability to form root nodules on host plants, establishing a mutualistic association that benefits both the bacterium and the host. In these nodules, B. japonicum USDA 6 can thrive in a microaerophilic environment, allowing it to efficiently carry out the process of nitrogen fixation while protecting itself from the host's defense mechanisms.↵↵As a soil-dwelling organism, Bradyrhizobium japonicum USDA 6 is adapted to various soil conditions and can influence the composition of microbial communities in its habitat. Its presence can enhance the availability of nitrogen to other soil microorganisms and plants, thereby playing a significant role in nutrient cycling within terrestrial ecosystems. Understanding the traits and ecological functions of B. japonicum USDA 6 can provide insights into sustainable agricultural practices and soil health management, highlighting the importance of soil microbiomes in supporting plant growth and ecosystem stability." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium japonicum negative soil 1037409 NC_017249.1 Bac0014818 Xanthomonas campestris pv. raphani 756C "Xanthomonas campestris pv. raphani 756C is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism, thriving in environments with adequate oxygen availability. This strain typically grows optimally at a temperature of 25.0°C, suggesting a preference for moderate, temperate conditions that may align with its natural habitats.↵↵As a member of the Xanthomonas genus, X. campestris pv. raphani 756C is host-associated, indicating a relationship with specific plant hosts, which could play a role in its ecological niche. The host-associated nature of this bacterium suggests it may contribute to the complex dynamics of microbial communities within plant systems, potentially influencing plant health and disease interactions.↵↵Understanding the traits of Xanthomonas campestris pv. raphani 756C can provide insights into its ecological role in agricultural settings, where it may interact with both plant hosts and other microbial inhabitants. The optimal growth conditions at 25.0°C highlight the importance of environmental factors in shaping the distribution and behavior of this microbe within its habitat. Further investigation into its interactions with host plants may reveal more about its contributions to plant microbiomes and its potential impact on agricultural practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas campestris Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living 990315 NC_017271.1 Bac0014819 Saccharolobus islandicus HVE10/4 "Saccharolobus islandicus HVE10/4 is a spherical-shaped coccus that typically exists as single cells and is characterized as a facultative aerobe. This microorganism thrives optimally at a temperature of 75.0°C, indicating its adaptation to high-temperature environments. As a heterotroph, S. islandicus HVE10/4 derives its energy from organic compounds, aligning with its specialized habitat, which may provide the necessary substrates for its metabolic processes.↵↵The ability of S. islandicus HVE10/4 to function as a facultative aerobe suggests that it can switch between aerobic and anaerobic metabolic pathways depending on the availability of oxygen, a trait that can enhance its survival in fluctuating environmental conditions. This metabolic flexibility, combined with its high-temperature preference, positions S. islandicus HVE10/4 as a potential candidate for biotechnological applications, particularly in processes that require thermophilic organisms.↵↵The specialized habitat of S. islandicus HVE10/4 may indicate its role in specific ecological niches, potentially contributing to biogeochemical cycles or the degradation of organic materials in extreme environments. Understanding the ecological roles and metabolic capabilities of such extremophiles can provide insights into the adaptability of life in extreme conditions and may inform the search for life in similar extraterrestrial environments." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus Cocci No 1 1 Facultative aerobe 75 Heterotroph Hyperthermophilic Specialized Free living Singles 930943 NC_017275.1 Bac0014820 Edwardsiella tarda FL6-60 "Edwardsiella tarda FL6-60 is a Gram-negative bacterium that belongs to the genus Edwardsiella, which is known for its association with aquatic environments. This particular strain, identified as FL6-60, exhibits the characteristic features of Gram-negative bacteria, including a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵The organism's morphological and physiological traits are consistent with other members of the genus, which are typically rod-shaped and motile due to the presence of flagella. While specific metabolic pathways and growth conditions for FL6-60 are not detailed, Edwardsiella species are generally facultatively anaerobic, allowing them to thrive in both aerobic and anaerobic environments.↵↵Ecologically, E. tarda strains are often found in freshwater and marine environments, where they may play a role in the decomposition of organic matter. This suggests that Edwardsiella tarda FL6-60 could be an important player in nutrient cycling within its habitat, contributing to the overall health of aquatic ecosystems. Understanding the ecological roles of such microorganisms can provide insights into their potential interactions within food webs and their significance in biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella tarda negative 718251 NC_017309.1 Bac0014821 Sinorhizobium meliloti SM11 "Sinorhizobium meliloti SM11 is a Gram-negative, rod-shaped bacterium that thrives optimally at 25.0°C and is classified as an aerobic organism. This species is known for its adaptability to multiple habitats, which likely contributes to its ecological versatility. As a member of the Sinorhizobium genus, S. meliloti SM11 is recognized for its role in symbiotic nitrogen fixation, particularly in association with leguminous plants, although specific interactions were not detailed in the available traits.↵↵The rod shape of S. meliloti SM11 may confer advantages in motility and nutrient acquisition within various environments, while its Gram-negative cell wall structure is indicative of a complex outer membrane that may play a role in environmental interactions and resistance to certain antibiotics. The preference for aerobic conditions suggests that oxygen availability is a critical factor for its metabolic processes, which may include the utilization of organic substrates in diverse ecological niches.↵↵A notable insight into the biology of S. meliloti SM11 is its potential contribution to soil health and fertility through nitrogen fixation. This trait not only enhances plant growth but also influences soil microbial communities and nutrient cycling, underscoring the importance of S. meliloti SM11 in agricultural ecosystems and its potential for sustainable farming practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 707241 NC_017325.1 Bac0014822 Helicobacter pylori 908 "Helicobacter pylori 908 is a Gram-negative bacterium characterized by its spirilla shape and presence as single cells. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a microaerophilic organism, H. pylori 908 requires reduced levels of oxygen for growth, adapting to the specific environments within the gastrointestinal tract of its hosts. ↵↵Typically found in the stomach lining of various mammals, this bacterium plays a significant role in the complex microbiome of its host. The unique combination of its Gram-negative cell wall structure and spiral morphology may contribute to its ability to navigate the viscous gastric mucus, enabling it to colonize effectively. Such adaptations likely facilitate its persistence in a challenging environment characterized by low pH and varying oxygen levels.↵↵Interestingly, the specific traits of H. pylori 908 suggest that its microaerophilic nature may be crucial for its survival and functionality within the host's gastric environment, potentially influencing the microbial community structure and interactions within the gastrointestinal tract. Understanding these characteristics can provide insights into the ecological roles of H. pylori and its interactions with host physiology and other microbial inhabitants." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 869727 NC_017357.1 Bac0014823 Helicobacter pylori Lithuania75 "Helicobacter pylori Lithuania75 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence as single cells. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions found in its natural host environments, primarily the human gastric mucosa. H. pylori is well-known for its adaptation to the acidic environment of the stomach, which is critical for its survival and colonization.↵↵The microaerophilic nature of H. pylori Lithuania75 indicates that it requires reduced levels of oxygen for optimal growth, a trait that facilitates its survival in the oxygen-limited niche of the gastric environment. This adaptation is significant, as it allows the bacterium to exploit the unique conditions present in the stomach, where oxygen levels are lower than in the surrounding tissues.↵↵Given its habitat is host-associated, H. pylori Lithuania75 is likely to engage in complex interactions with the host's immune system and gastric microbiota, which can influence both its persistence and the host's gastric health. The strain's single-cell arrangement may also play a role in its motility and ability to navigate the viscous gastric mucus, providing insights into its ecological strategies for colonization within the host. Understanding these traits can contribute to broader knowledge of H. pylori’s ecological dynamics and its evolutionary adaptations to the human stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 907237 NC_017363.1 Bac0014824 Helicobacter pylori Gambia94/24 "Helicobacter pylori Gambia94/24 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat. As a member of the Helicobacter genus, H. pylori is well-known for its association with the gastric mucosa of various hosts, where it plays a role in complex microbial ecosystems.↵↵The microaerophilic nature of H. pylori Gambia94/24 suggests a specialized requirement for reduced oxygen levels, which is typical for organisms that inhabit the gastrointestinal tract. This adaptation may provide insights into its survival strategies, particularly in environments where oxygen concentration fluctuates. ↵↵Moreover, the spiral morphology of H. pylori facilitates its motility in the viscous gastric environment, potentially enhancing its ability to colonize and persist in host tissues. Understanding the specific traits of H. pylori Gambia94/24 contributes to the broader knowledge of Helicobacter species and their interactions within host-associated microbiomes, emphasizing the importance of such bacteria in gastrointestinal health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 907240 NC_017364.1 Bac0014825 Ketogulonicigenium vulgare WSH-001 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ketogulonicigenium Ketogulonicigenium vulgare 759362 NC_017384.1 Bac0014826 Chlamydia trachomatis A2497 "Chlamydia trachomatis A2497 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C, indicating its adaptation to the warm environment of a host organism. This microbe is classified within the genus Chlamydia, which is known for its obligate intracellular lifestyle, relying on host cells for replication and survival. ↵↵C. trachomatis A2497 is part of a complex of strains that are significant in human health, often associated with various infections. Its rod shape may facilitate certain interactions with host cells, although specific mechanisms of attachment and invasion are not detailed here. The optimal growth temperature suggests that this strain is well adapted to the human body, making it a notable subject of study in understanding host-pathogen interactions.↵↵Considering its host-associated habitat, C. trachomatis A2497 likely plays a role in the dynamics of microbial communities within the host, potentially influencing not only its own pathogenicity but also that of other cohabiting microorganisms. This aspect highlights the importance of studying such pathogens within the broader context of human microbiota and host health, as interactions among various microbial species can significantly impact disease outcomes and overall well-being." Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis Negative Rod No 1 2 37 Mesophilic HostAssociated Symbiotic 580047 NC_017437.1 Bac0014827 Erwinia sp. Ejp617 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia sp. Ejp617 215689 NC_017442.1 Bac0014828 Lactobacillus delbrueckii subsp. bulgaricus 2038 "Lactobacillus delbrueckii subsp. bulgaricus 2038 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is a facultative anaerobe, allowing it to thrive in both oxygen-rich and low-oxygen environments. L. delbrueckii subsp. bulgaricus 2038 has an optimal growth temperature of 42.0°C, indicating its preference for warmer habitats, which may include various fermented dairy products, such as yogurt, as well as other environments conducive to its growth.↵↵This subspecies is known for its role in the fermentation process, contributing to the production of lactic acid, which not only acts as a preservative but also enhances the flavor and texture of dairy products. The ability to grow in diverse habitats suggests that L. delbrueckii subsp. bulgaricus 2038 may play a significant role in various fermentation processes beyond traditional dairy applications, potentially influencing the microbial ecology of environments where fermentation occurs. Its optimal growth at elevated temperatures may also indicate its adaptation to specific niches where heat is a beneficial factor for microbial activity, thus contributing to its ecological versatility." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 353496 NC_017469.1 Bac0014829 Lactobacillus amylovorus GRL1118 "Lactobacillus amylovorus GRL1118 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in anaerobic environments. This microbe is known to inhabit multiple ecological niches, which may include various fermented foods and environments rich in carbohydrates, where it can contribute to the fermentation process. ↵↵As an anaerobe, Lactobacillus amylovorus GRL1118 relies on fermentation for energy production, allowing it to play a crucial role in the preservation and flavor development of fermented products. The ability of this species to ferment starch and produce lactic acid suggests its potential utility in food applications, particularly in enhancing the nutritional profile and safety of food products. ↵↵The unique combination of its rod shape and chain arrangement may facilitate its colonization in anaerobic habitats, potentially influencing the microbial community structure in these environments. The adaptability of Lactobacillus amylovorus GRL1118 to various habitats highlights its versatile role in both ecological and industrial contexts, underscoring its significance in microbial ecology and food biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains 695562 NC_017470.1 Bac0014830 Lactobacillus johnsonii DPC 6026 "Lactobacillus johnsonii DPC 6026 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This strain exhibits optimal growth at a temperature of 25.0°C and is primarily found in host-associated environments. ↵↵As a member of the Lactobacillus genus, L. johnsonii DPC 6026 is expected to play a role in the fermentation processes within its host, contributing to gut microbiota balance and potentially influencing host health through metabolic activities. The facultative anaerobic nature of this microbe suggests its adaptability to varying oxygen levels, allowing it to thrive in diverse conditions within host environments.↵↵The ability to form chains may enhance its interactions with other microbial species, potentially facilitating cooperative behaviors such as nutrient sharing or biofilm formation. Furthermore, the habitat specificity indicates that L. johnsonii DPC 6026 could be involved in specific host-associated functions, which may include the modulation of immune responses or the competitive exclusion of pathogenic organisms in the gastrointestinal tract. ↵↵Overall, the characteristics of L. johnsonii DPC 6026 suggest it may play a significant role in maintaining microbial homeostasis within its host, although further research is needed to elucidate the full extent of its ecological interactions and contributions to host health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains 909954 NC_017477.1 Bac0014831 Mycoplasmoides pneumoniae FH Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pneumoniae 722438 NC_017504.1 Bac0014832 Neisseria meningitidis alpha710 "Neisseria meningitidis alpha710 is a Gram-negative cocci bacterium that typically occurs in pairs, demonstrating its characteristic diplococcal arrangement. This strain thrives optimally at a temperature of 35.0°C, which aligns with the temperature range commonly found in the human body, indicating its adaptation to a host-associated habitat. As an aerobe, N. meningitidis alpha710 requires oxygen for its metabolic processes, which is consistent with the respiratory conditions typically present in its host environment.↵↵The habitat preference of N. meningitidis alpha710 suggests a close association with mucosal surfaces, particularly those of the nasopharynx, where it can exist as a commensal organism in healthy individuals. However, its presence in this niche underscores its potential role in disease under certain circumstances. Understanding the ecological context of this strain provides insight into its survivability and interactions within the host, highlighting the importance of host-associated environments in shaping the biology and behavior of pathogenic bacteria. This ecological perspective emphasizes the delicate balance between microbial colonization and host health, which is critical for further investigations into the dynamics of Neisseria species in human populations." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 630588 NC_017505.1 Bac0014833 Mesomycoplasma hyopneumoniae 168 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyopneumoniae 907287 NC_017509.1 Bac0014834 Listeria monocytogenes 10403S "Listeria monocytogenes 10403S is a Gram-positive rod-shaped bacterium that typically arranges itself in chains or singles. This strain is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, which allows it to thrive in diverse environments. Listeria monocytogenes 10403S is a chemoorganotroph, relying on organic compounds as its primary energy source. The optimal growth temperature for this bacterium is around 30.0°C, indicating its adaptability to various habitats, possibly including food sources and environmental niches where temperatures may fluctuate.↵↵The ability of Listeria monocytogenes 10403S to exist in multiple habitats could be indicative of its survival strategy, allowing it to persist in both natural and anthropogenic environments. This trait may contribute to its resilience and adaptability, which are critical for its survival under varying conditions. Such characteristics suggest that this strain may play a role in nutrient cycling within its ecological niches, although the specific interactions within these environments remain to be fully elucidated." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles 393133 NC_017544.1 Bac0014835 Xanthomonas albilineans Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas albilineans 29447 NC_017557.1 Bac0014836 Ralstonia solanacearum CMR15 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum 859655 NC_017558.1 Bac0014837 Shewanella baltica BA175 "Shewanella baltica BA175 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles, showcasing its unique cellular arrangement. As a facultative heterotroph, this microbe can utilize organic compounds for energy in both aerobic and anaerobic environments, demonstrating versatility in its metabolic capabilities. S. baltica BA175 has been isolated from various habitats, highlighting its adaptability to diverse ecological niches.↵↵The facultative nature of S. baltica BA175 suggests its potential involvement in biogeochemical cycles, particularly in environments where oxygen availability fluctuates. This adaptability allows it to thrive in marine ecosystems, where it may play significant roles in organic matter decomposition and nutrient recycling. Furthermore, its ability to sustain metabolic functions in varying oxygen levels may facilitate interactions with other microbial communities, contributing to the overall dynamics of the microbial ecosystem. Understanding the traits and habitat preferences of S. baltica BA175 can provide insights into its ecological roles and the broader implications for marine microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella baltica Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Multiple Free living Pairs - Singles 693974 NC_017571.1 Bac0014838 Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptantibioticus Streptantibioticus cattleyicolor 1003195 NC_017585.1 Bac0014839 Streptococcus salivarius 57.I "Streptococcus salivarius 57.I is a Gram-positive coccus that typically occurs in chains or pairs and is classified as a facultative anaerobe. This strain does not undergo sporulation, indicating a reliance on stable environments for growth and survival. As a host-associated microbe, S. salivarius 57.I is primarily found in the oral cavity, where it plays a role in the complex microbiome of humans and other mammals.↵↵The presence of this strain in the oral microbiota suggests a potential contribution to oral health, as certain Streptococcus species are known to compete with pathogenic bacteria, thus influencing the microbial balance. S. salivarius has also been studied for its probiotic potential, with implications for maintaining oral and gastrointestinal health. ↵↵Given its nonsporulating nature and facultative anaerobic metabolism, S. salivarius 57.I likely thrives in the dynamic, oxygen-variable conditions of the oral environment, where it can utilize various substrates for energy. Understanding the specific ecological niche occupied by this strain may provide insights into its interactions with other microbial inhabitants and its role in the broader context of host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1046629 NC_017594.1 Bac0014840 Streptococcus suis GZ1 "Streptococcus suis GZ1 is a Gram-positive coccus that typically arranges itself in chains, pairs, or as single cells. This bacterium thrives optimally at a temperature of 37.0°C, suggesting a preference for warm-blooded hosts. As a facultative anaerobe, S. suis GZ1 is capable of surviving in both aerobic and anaerobic environments, which may enhance its adaptability to various ecological niches.↵↵The specialized habitat of S. suis GZ1 indicates that it may occupy unique ecological niches, potentially associated with specific hosts or environmental conditions. This specialization could reflect a co-evolutionary relationship with its environment or host organisms, allowing it to exploit particular resources or niches that are less accessible to other microbial species. Understanding the ecological roles and behaviors of S. suis GZ1 can provide insights into its interactions within microbial communities and its potential impact on host health in its specialized habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 423211 NC_017617.1 Bac0014841 Escherichia coli O83:H1 str. NRG 857C "Escherichia coli O83:H1 str. NRG 857C is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. It is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, and it has an optimal growth temperature of 37.0°C, which is consistent with the physiological temperature of the human body. This microbe is primarily host-associated, suggesting that it is commonly found in association with animal hosts, potentially within the gastrointestinal tract.↵↵The facultative anaerobic nature of E. coli O83:H1 str. NRG 857C allows it to adapt to varying oxygen levels in its habitat, which is crucial for survival in diverse environments encountered within a host. This adaptability may also confer advantages in competitive interactions with other microbial communities in the gut. Understanding the growth conditions and habitat preferences of this strain can provide insights into its ecological roles, including its potential contributions to gut microbiota composition and function. Additionally, the ability to grow optimally at 37.0°C indicates a specialization for life within warm-blooded hosts, emphasizing its potential interactions with host biology. Further research into this strain may unveil additional ecological or physiological characteristics that could illuminate its role in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 685038 NC_017634.1 Bac0014842 Halobacillus halophilus DSM 2266 "**Halobacillus halophilus DSM 2266** is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and utilize organic compounds as an energy source, classifying it as an organotrophic chemotroph. This microbe is obligately aerobic, necessitating the presence of oxygen for its metabolic processes.↵↵As a member of the genus Halobacillus, H. halophilus is adapted to high-salinity environments, which is indicative of its potential ecological niche in saline habitats such as salt flats or salt mines. The spore-forming capability of this species suggests an important survival strategy that enables it to withstand extreme conditions, including desiccation and nutrient scarcity, commonly found in its saline habitats.↵↵The ability of H. halophilus to thrive in such environments while relying on organic substrates highlights its role in nutrient cycling within halophilic ecosystems. This organism may contribute to the degradation of organic materials in saline environments, thus influencing the overall microbial community structure and function in these unique ecological niches. The adaptation mechanisms of H. halophilus to high salinity and its metabolic versatility may provide insights into the evolutionary processes that allow life to persist in extreme conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus halophilus Gram-positive rod aerobic organotroph; chemotroph spore-forming 866895 NC_017668.1 Bac0014843 Staphylococcus aureus subsp. aureus 71193 "Staphylococcus aureus subsp. aureus 71193 is a Gram-positive cocci bacterium that typically forms clusters or singles. This strain is facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic conditions, which may confer an ecological advantage in diverse host-associated environments. Notably, its optimal growth temperature is 3.0°C, suggesting that it may be particularly well-adapted to cooler habitats, possibly within specific niches of host organisms.↵↵The cluster formation of S. aureus subsp. aureus 71193 is characteristic of staphylococci, which can influence its interactions within host environments and may play a role in its survival and proliferation. As a host-associated microbe, the presence of this strain within the microbiota of various organisms could contribute to a complex interplay between microbial communities and their hosts. ↵↵Understanding the specific ecological roles and adaptations of S. aureus subsp. aureus 71193, particularly in relation to its low optimal temperature, may provide insights into its potential survival strategies in cooler environments where other bacteria may not thrive. Further exploration of this strain's ecological relationships could elucidate its contributions to microbial diversity and dynamics in host-associated habitats." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 1155084 NC_017673.1 Bac0014844 Helicobacter cetorum MIT 00-7128 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cetorum 182217 NC_017737.1 Bac0014845 Actinoplanes sp. SE50/110 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes sp. SE50/110 134676 NC_017803.1 Bac0014846 Methylophaga frappieri Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga frappieri 754477 NC_017858.1 Bac0014847 Mycobacterium sp. MOTT36Y Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. MOTT36Y 1168287 NC_017904.1 Bac0014848 Helicobacter pylori XZ274 "Helicobacter pylori XZ274 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its association with warm-blooded hosts. H. pylori XZ274 is known to inhabit the gastric mucosa of its hosts, where it plays a significant role in the complex microbial community of the stomach.↵↵The microaerophilic nature of H. pylori XZ274 indicates that it requires reduced levels of oxygen for growth, which is typically found in the stomach environment. This adaptation allows the bacterium to survive in a niche that is inhospitable to many other microbial species, highlighting its evolutionary specialization to host-associated habitats. The ability of H. pylori XZ274 to occupy this specific ecological niche may contribute to its persistence within the host, where it can interact with both the host immune system and the gastric microbiota.↵↵Understanding the traits of H. pylori XZ274 not only sheds light on the biology of this organism but also emphasizes the importance of temperature and oxygen levels in shaping microbial communities within host environments. This insight underscores the intricate relationships between microorganisms and their hosts, as well as the potential implications for host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1127122 NC_017919.1 Bac0014849 Mesotoga prima MesG1.Ag.4.2 Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga prima anaerobic 660470 NC_017934.1 Bac0014850 Thermogladius calderae 1633 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Thermogladius Thermogladius calderae 1184251 NC_017954.1 Bac0014851 Advenella kashmirensis WT001 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Advenella Advenella kashmirensis 1036672 NC_017964.1 Bac0014852 Thermoanaerobacterium saccharolyticum JW/SL-YS485 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacterium Thermoanaerobacterium saccharolyticum anaerobic 1094508 NC_017992.1 Bac0014853 Belliella baltica DSM 15883 "Belliella baltica DSM 15883 is a Gram-negative, rod-shaped bacterium that exhibits aerobic growth, with an optimal growth temperature of 25.0°C. This organism is part of a diverse group of bacteria that thrive in oxygen-rich environments, which may influence its metabolic pathways and ecological interactions. As a member of the genus Belliella, it may be involved in various biochemical processes, potentially contributing to nutrient cycling in its habitat.↵↵The Gram-negative nature of Belliella baltica suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may afford the microbe certain advantages in its ecological niche, such as resistance to certain antibiotics and the ability to interact with other microbial communities. Its rod shape is characteristic of many bacteria that occupy similar environments, often facilitating motility and nutrient uptake.↵↵Given the optimal growth temperature of 25.0°C, Belliella baltica may be particularly well-suited to temperate aquatic ecosystems, where it could play a role in the degradation of organic matter or the cycling of essential nutrients. While specific ecological roles of Belliella baltica remain to be explored, its traits suggest it could be a key player in maintaining the health and balance of its native microbial community. Further research into its metabolic capabilities and interactions could illuminate its contributions to biogeochemical cycles in aquatic systems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Belliella Belliella baltica Gram-negative rod aerobic 25 mesophilic 866536 NC_018010.1 Bac0014854 Terriglobus roseus DSM 18391 Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus 926566 NC_018014.1 Bac0014855 Methylocystis sp. SC2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylocystis Methylocystis hydrogenophila 187303 NC_018485.1 Bac0014856 Desulfosporosinus meridiei DSM 13257 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfosporosinus Desulfosporosinus meridiei anaerobic 768704 NC_018515.1 Bac0014857 Nocardiopsis alba ATCC BAA-2165 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis alba 29 mesophilic 1205910 NC_018524.1 Bac0014858 Alpha proteobacterium HIMB5 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae alpha proteobacterium HIMB5 859653 NC_018643.1 Bac0014859 Alpha proteobacterium HIMB59 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae alpha proteobacterium HIMB59 744985 NC_018644.1 Bac0014860 Desulfobacula toluolica Tol2 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula toluolica anaerobic 651182 NC_018645.1 Bac0014861 Candidatus Nitrosopumilus koreensis AR1 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Candidatus Nitrosopumilus koreensis 1229908 NC_018655.1 Bac0014862 Escherichia coli O104:H4 str. 2011C-3493 "Escherichia coli O104:H4 str. 2011C-3493 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which corresponds to the human body temperature, suggesting its adaptation to host-associated environments. As a facultative anaerobe, E. coli O104:H4 str. 2011C-3493 can grow in both aerobic and anaerobic conditions, allowing it to exploit a variety of ecological niches within the host, such as the intestinal tract.↵↵The association of this strain with host environments highlights its potential interactions with the host's microbiome and immune system. Given its capabilities, E. coli O104:H4 str. 2011C-3493 may play a role in nutrient absorption and microbial competition within the gastrointestinal tract, contributing to the complex dynamics of gut microbiota. Understanding its growth characteristics and habitat preferences can provide insights into the ecological roles of E. coli in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1133852 NC_018658.1 Bac0014863 Alteromonas macleodii str. 'Balearic Sea AD45' Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas macleodii 1004787 NC_018679.1 Bac0014864 Bacillus thuringiensis MC28 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NC_018684.1 Bac0014865 Alteromonas macleodii str. 'Black Sea 11' Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas macleodii 1004785 NC_018692.1 Bac0014866 Amphibacillus xylanus NBRC 15112 "Amphibacillus xylanus NBRC 15112 is a Gram-positive, rod-shaped bacterium notable for its ability to form spores. This microbe is classified as an organotroph and chemotroph, indicating that it derives its energy from organic compounds through various metabolic pathways. Additionally, A. xylanus exhibits facultative aerobic and anaerobic respiration, allowing it to thrive in both oxygen-rich and oxygen-depleted environments. ↵↵The spore-forming capability of A. xylanus may confer advantages in survival under adverse conditions, enabling it to endure environmental stresses that would be detrimental to non-sporulating organisms. This trait is particularly significant in various habitats where fluctuations in nutrient availability and oxygen levels occur.↵↵Given its metabolic versatility and sporulation trait, A. xylanus could play a role in the decomposition of organic matter and nutrient cycling within its ecosystem. This adaptability may facilitate its presence in diverse ecological niches, potentially influencing soil health and the microbial community structure in its surroundings. Further studies could elucidate its specific ecological roles and contributions to biogeochemical processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Amphibacillus Amphibacillus xylanus Gram-positive rod non-motile facultative aerobe/anaerobe organotroph; chemotroph spore-forming 698758 NC_018704.1 Bac0014867 Streptococcus dysgalactiae subsp. equisimilis RE378 "Streptococcus dysgalactiae subsp. equisimilis RE378 is a Gram-positive coccoid bacterium that typically forms chains or may appear as single cells. This nonsporulating microbe is categorized as facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments. S. dysgalactiae subsp. equisimilis RE378 is primarily associated with host environments, suggesting a close relationship with animal or human hosts in its ecological niche.↵↵The organism's facultative anaerobic metabolism allows it to adapt to varying oxygen levels, potentially enhancing its survival in diverse host-associated habitats. This trait may contribute to its ability to colonize different tissues or environments within a host, although specific pathogenic associations or disease states are not detailed within the provided information.↵↵Understanding the ecological role of Streptococcus dysgalactiae subsp. equisimilis RE378 in host-associated environments may provide insights into its interactions with the microbiome of the host and its potential contributions to health or disease dynamics. Further exploration of its ecological significance could elucidate its role in host-microbe interactions and the broader implications for microbial diversity in host-associated ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Chains-Singles Nonsporulating 617121 NC_018712.1 Bac0014868 Thermacetogenium phaeum DSM 12270 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermacetogenium Thermacetogenium phaeum anaerobic 1089553 NC_018870.1 Bac0014869 Methanolobus psychrophilus R15 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus psychrophilus 1094980 NC_018876.1 Bac0014870 Halobacteriovorax marinus SJ Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax marinus 862908 NC_019100.1 Bac0014871 Thermus oshimai JL-2 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai 751945 NC_019388.1 Bac0014872 Gluconobacter oxydans H24 "Gluconobacter oxydans H24 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolism, requiring oxygen for its growth and energy production. G. oxydans H24 is known to inhabit a variety of environments, indicating its adaptability to different ecological niches.↵↵As an aerobic organism, G. oxydans H24 plays a significant role in the oxidation of sugars and alcohols, contributing to the fermentation processes found in natural and industrial contexts. Its capability to utilize diverse substrates positions it as a potential agent in biotechnological applications, particularly in the food and beverage industries, where it can be employed in the production of various organic acids.↵↵The ability of G. oxydans H24 to thrive in multiple habitats suggests that it may have evolved mechanisms to cope with varying environmental conditions, which could include fluctuations in nutrient availability and oxygen levels. This adaptability not only highlights the ecological versatility of G. oxydans but also underscores its potential in bioprocessing and the development of sustainable manufacturing methods." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter oxydans Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living Singles 1224746 NC_019396.1 Bac0014873 Carnobacterium maltaromaticum LMA28 "Carnobacterium maltaromaticum LMA28 is a rod-shaped, nonsporulating bacterium that typically forms chains and exhibits facultative anaerobic metabolism, functioning as a chemoheterotroph. This species is notable for its ability to thrive in diverse habitats, which may include various environments such as food products, where it is often associated with fermented items.↵↵As a facultative anaerobe, C. maltaromaticum LMA28 can adapt to varying oxygen levels, allowing it to effectively utilize available energy sources under both aerobic and anaerobic conditions. This metabolic flexibility may contribute to its survival and proliferation in fluctuating ecological niches. The organism's chain-forming characteristic may also play a role in its interactions within microbial communities, potentially influencing its ecological dynamics.↵↵The presence of C. maltaromaticum in multiple habitats underscores its potential significance in biotechnological applications, particularly in the food industry, where it may affect the flavor profile and preservation of fermented foods. This adaptability not only highlights its ecological resilience but also suggests a capacity for participation in complex microbial ecosystems, where interspecies interactions may enhance the overall functionality of the microbiota. Understanding the specific roles of C. maltaromaticum LMA28 in these contexts could provide insights into its contributions to fermentation processes and microbial ecology." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium maltaromaticum Rod No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 1234679 NC_019425.2 Bac0014874 Listeria monocytogenes serotype 4b str. LL195 "Listeria monocytogenes serotype 4b str. LL195 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or as single cells. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic characteristics, allowing it to grow in both aerobic and anaerobic environments. As a chemoorganotroph, L. monocytogenes serotype 4b str. LL195 derives its energy from organic compounds, which it metabolizes through various biochemical pathways.↵↵The habitat of L. monocytogenes serotype 4b str. LL195 is diverse, suggesting a versatile ecological adaptability that allows it to colonize a range of environments. This adaptability may contribute to its role in foodborne transmission, as it can inhabit various niches within food products. The strain's ability to exist in multiple habitats underscores its ecological resilience and potential interactions with other microbial communities.↵↵Understanding the environmental preferences and metabolic capabilities of L. monocytogenes serotype 4b str. LL195 provides critical insights into its survival strategies and ecological dynamics, particularly in food systems where it may pose significant risks. Further studies into its habitat utilization and metabolic versatility could illuminate its role in food safety and public health." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles 1230340 NC_019556.1 Bac0014875 Helicobacter pylori Aklavik117 "Helicobacter pylori Aklavik117 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C and exhibits a microaerophilic oxygen requirement, indicating that it requires reduced levels of oxygen for growth. H. pylori Aklavik117 is host-associated, suggesting that it resides within a specific host environment, which is critical for its survival and proliferation.↵↵The unique morphological and physiological traits of H. pylori Aklavik117 align with the broader characteristics of the Helicobacter genus, known for its ability to colonize the gastric mucosa of various hosts. Its microaerophilic nature implies a potential adaptation to the hypoxic conditions often found in the gastric environment, where oxygen levels are lower than atmospheric concentrations. ↵↵The ecological significance of H. pylori Aklavik117 may be linked to its role in the host's gastrointestinal microbiome, where it could contribute to complex interactions with other microbial communities and influence host health. Understanding the specific adaptations of H. pylori Aklavik117 within its host-associated habitat provides insight into the evolutionary pressures faced by this organism and underscores the intricate relationships that exist in microbial ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1055531 NC_019562.1 Bac0014876 Synechococcus sp. PCC 6312 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. PCC 6312 Fresh water 195253 NC_019680.1 Bac0014877 [Leptolyngbya] sp. PCC 7376 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus [Leptolyngbya] sp. PCC 7376 111781 NC_019683.1 Bac0014878 Synechococcus sp. PCC 7502 Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Pseudanabaenococcus Pseudanabaenococcus habilitatus 3687901 NC_019691.1 Bac0014879 Pseudanabaena sp. PCC 7367 Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Thalassoporaceae Thalassoporum Thalassoporum mexicanum 3457544 NC_019701.1 Bac0014880 Geitlerinema sp. PCC 7407 Bacillati Cyanobacteriota Cyanophyceae Geitlerinematales Geitlerinemataceae Geitlerinema Geitlerinema sp. PCC 7407 1173025 NC_019703.1 Bac0014881 Oscillatoria nigro-viridis PCC 7112 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Phormidium Phormidium nigroviride 482564 NC_019729.1 Bac0014882 Halothece sp. PCC 7418 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Halothecacae Halothece Halothece sp. PCC 7418 saline environments 65093 NC_019779.1 Bac0014883 Deinococcus peraridilitoris DSM 19664 "Deinococcus peraridilitoris DSM 19664 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at 29.0°C. This organism is characterized by its non-spore-forming nature, distinguishing it from other members of the Deinococcus genus that are known for their resilience and sporulation capabilities. ↵↵The Gram-positive nature of D. peraridilitoris suggests it possesses a thick peptidoglycan layer, which is indicative of its structural integrity and potential resistance to certain environmental stresses. Its aerobic requirement indicates that it relies on oxygen for its metabolic processes, which may influence its habitat preferences and interactions within microbial communities.↵↵The optimal growth temperature of 29.0°C suggests that D. peraridilitoris may be well-adapted to moderate environments, potentially including soil or similar terrestrial habitats where temperature fluctuations are minimal. The bacterium's non-spore-forming trait may indicate a reliance on stable environmental conditions for survival and reproduction, as opposed to forming spores as a means of enduring extreme environments.↵↵Overall, the traits of Deinococcus peraridilitoris DSM 19664 point towards a specialized ecological niche where it may play a role in nutrient cycling or other microbial interactions, particularly in environments that are not subject to drastic temperature changes. Its unique combination of traits may also facilitate its adaptability in specific aerobic ecosystems, highlighting its potential contributions to microbial diversity and function in those habitats." Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 937777 NC_019790.1 Bac0014884 Natronobacterium gregoryi SP2 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobacterium Natronobacterium gregoryi 797304 NC_019792.1 Bac0014885 Desulfitobacterium dichloroeliminans LMG P-21439 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium dichloroeliminans 871963 NC_019903.1 Bac0014886 Liberibacter crescens BT-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Liberibacter Liberibacter crescens 1215343 NC_019907.1 Bac0014887 Stutzerimonas stutzeri RCH2 "Stutzerimonas stutzeri RCH2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This organism is characterized as a heterotroph, utilizing organic compounds as its energy source, and it requires oxygen for growth, classifying it as an aerobe. S. stutzeri RCH2 is known to inhabit host-associated environments, indicating a potential symbiotic or commensal relationship with its host organisms.↵↵The structure and metabolic capabilities of S. stutzeri RCH2 suggest that it plays a role in the microbial communities of its host, possibly contributing to processes such as nutrient cycling or the degradation of organic materials. Its aerobic nature implies a dependence on oxygen-rich environments, which may influence its distribution and interactions within host ecosystems. Furthermore, the presence of this bacterium in host-associated habitats may have implications for understanding microbial dynamics and the overall health of the host.↵↵This organism exemplifies how specific microbial traits can inform us about their ecological niches and interactions within larger biological systems, highlighting the importance of aerobic heterotrophs in maintaining the balance of microbial communities associated with various hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 644801 NC_019936.1 Bac0014888 Methanoregula formicica SMSP Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula formicica 593750 NC_019943.1 Bac0014889 Mycoplasmopsis cynos C142 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos 1246955 NC_019949.1 Bac0014890 Maridesulfovibrio hydrothermalis AM13 = DSM 14728 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio hydrothermalis 1121451 NC_019953.1 Bac0014891 Halobacteroides halobius DSM 5150 Bacillati Bacillota Clostridia Halanaerobiales Halobacteroidaceae Halobacteroides Halobacteroides halobius 748449 NC_019978.1 Bac0014892 Enterobacteriaceae bacterium strain FGI 57 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacteriaceae bacterium strain FGI 57 693444 NC_020063.1 Bac0014893 Serratia sp. FGI94 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. FGI94 671990 NC_020064.1 Bac0014894 Thermoclostridium stercorarium subsp. stercorarium DSM 8532 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Thermoclostridium Thermoclostridium stercorarium 1121335 NC_020134.1 Bac0014895 Nonlabens dokdonensis DSW-6 "Nonlabens dokdonensis DSW-6 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and inability to form spores. This microorganism thrives optimally at a temperature of 25.0 °C, indicating a preference for moderate environmental conditions. The Gram-negative nature of Nonlabens dokdonensis DSW-6 suggests a particular structure of its cell wall, typically associated with an outer membrane containing lipopolysaccharides, which may play a role in its interactions within various ecosystems.↵↵Given its aerobic requirement, Nonlabens dokdonensis DSW-6 is likely to inhabit environments rich in oxygen, potentially influencing its distribution and ecological roles. The organism’s inability to form spores may limit its ability to withstand extreme environmental stresses; however, this trait may also reflect a specialization for stable habitats where aerobic conditions prevail. ↵↵Further research into Nonlabens dokdonensis DSW-6 could elucidate its functional roles within microbial communities, particularly in environments where aerobic degradation processes are essential for nutrient cycling. Its specific adaptations to moderate temperatures and aerobic conditions may provide insights into microbial diversity and functional redundancy in similar ecological niches." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens dokdonensis Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 592029 NC_020156.1 Bac0014896 Geobacillus sp. GHH01 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. GHH01 1233873 NC_020210.1 Bac0014897 Sulfolobus acidocaldarius Ron12/I "Sulfolobus acidocaldarius Ron12/I is a thermophilic, aerobic coccus that thrives in specialized habitats at an optimal temperature of 70.0°C. This archaeon is characterized by its single-cell arrangement, which distinguishes it from other microbial forms that may exhibit different cellular structures or arrangements. As a lithotroph, S. acidocaldarius Ron12/I utilizes inorganic substrates as its energy source, enabling it to thrive in extreme environments where organic nutrients may be limited.↵↵The unique characteristics of S. acidocaldarius Ron12/I suggest it plays a crucial role in biogeochemical cycles within its specialized habitat, likely contributing to the cycling of sulfur and other inorganic compounds. Its ability to metabolize inorganic materials in high-temperature environments underscores the adaptability of archaeal life forms in extreme conditions. Understanding the metabolic pathways and ecological interactions of this microorganism can provide insights into the evolutionary processes that enable life to persist in some of the most inhospitable environments on Earth." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius Cocci No 1 1 Aerobe 70 Lithotroph Thermophilic Specialized Free living Singles 1028567 NC_020247.1 Bac0014898 Bartonella australis AUST/NH1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella australis 1094489 NC_020300.1 Bac0014899 Natronomonas moolapensis 8.8.11 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas moolapensis 268739 NC_020388.1 Bac0014900 Methanosarcina mazei Tuc01 "Methanosarcina mazei Tuc01 is a coccoid, nonsporulating archaeon that thrives in anaerobic environments, with an optimal growth temperature of 30.0°C. This organism is known to utilize lithotrophic metabolism, which allows it to derive energy from inorganic compounds. Methanosarcina mazei Tuc01 is versatile in its habitat, being found in various anaerobic niches, although specific environmental contexts are not detailed in the available data.↵↵As an anaerobe, Methanosarcina mazei Tuc01 plays a critical role in biogeochemical cycling, particularly in methanogenesis, where it contributes to the production of methane from substrates such as carbon dioxide and hydrogen. The organism’s capacity to inhabit diverse anaerobic environments underscores its ecological significance, as it may participate in the degradation of organic materials and the transformation of carbon in various ecosystems, including wetlands and sedimentary environments.↵↵The metabolic versatility of Methanosarcina mazei Tuc01 highlights its potential importance in anaerobic biotechnological applications, such as bioenergy production through methane generation. This capability positions the organism as a key player in both natural and engineered ecosystems, where it may help in the management of organic waste and the enhancement of renewable energy sources. Further investigation into its metabolic pathways and environmental interactions could reveal additional insights into its ecological roles and applications." Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Cocci No 1 1 Anaerobe 30 Lithotroph Mesophilic Multiple Free living Nonsporulating 1236903 NC_020389.1 Bac0014901 Pseudodesulfovibrio piezophilus C1TLV30 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio piezophilus anaerobic 1322246 NC_020409.1 Bac0014902 Hydrogenobaculum sp. HO Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Hydrogenobaculum Hydrogenobaculum sp. HO 547144 NC_020411.1 Bac0014903 Beta proteobacterium CB Pseudomonadati Pseudomonadota Betaproteobacteria beta proteobacterium CB 543913 NC_020417.1 Bac0014904 Morganella morganii subsp. morganii KT "Morganella morganii subsp. morganii KT is a Gram-negative bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This subspecies is part of the Enterobacteriaceae family and is notable for its ability to ferment a variety of carbohydrates, which may contribute to its versatility in diverse ecological niches.↵↵As a Gram-negative organism, Morganella morganii subsp. morganii KT possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interactions with other microorganisms and host environments. The facultative anaerobic nature of this strain suggests it can adapt to fluctuating oxygen levels, enabling it to colonize various habitats, from soil to water sources, and potentially within host organisms.↵↵The metabolic flexibility of Morganella morganii subsp. morganii KT might confer advantages in nutrient-poor environments, as it can utilize alternative electron acceptors when oxygen is scarce. This adaptability underscores the potential ecological roles this bacterium may play in nutrient cycling and its interactions within microbial communities.↵↵Overall, Morganella morganii subsp. morganii KT exemplifies the resilience and adaptability of certain Gram-negative bacteria, allowing it to inhabit diverse environments while potentially influencing microbial dynamics in its surroundings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Facultative anaerobe 1124991 NC_020418.1 Bac0014905 Lactococcus lactis subsp. lactis IO-1 "Lactococcus lactis subsp. lactis IO-1 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 40.0°C and exhibits facultative anaerobic metabolism. This subspecies is widely distributed across various habitats, indicating its adaptability to different environmental conditions. As a member of the Lactococcus genus, L. lactis subsp. lactis IO-1 plays a significant role in the fermentation processes of dairy products, including cheese and yogurt, where it contributes to flavor and texture development.↵↵The facultative anaerobic nature of L. lactis subsp. lactis IO-1 allows it to grow in both aerobic and anaerobic environments, enhancing its utility in food fermentation. This metabolic versatility may also provide a competitive advantage in diverse ecological niches, as it can effectively utilize available resources under varying oxygen levels. The optimal growth temperature of 40.0°C suggests a preference for warmer environments, which could be relevant in specific agricultural or industrial applications where fermentation processes are conducted at elevated temperatures.↵↵In summary, Lactococcus lactis subsp. lactis IO-1 exemplifies a microbe with significant implications for fermentation technology, particularly in dairy production. Its ability to thrive across multiple habitats and under different oxygen conditions underscores its ecological flexibility and potential applications in bioprocessing and food science." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1046624 NC_020450.1 Bac0014906 Streptomyces davaonensis JCM 4913 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces davaonensis 1214101 NC_020504.1 Bac0014907 Helicobacter pylori OK113 "Helicobacter pylori OK113 is a Gram-negative microbe characterized by its spirilla shape and single-cell arrangement. This bacterium thrives optimally at 37.0°C, aligning with the typical human body temperature, which suggests its adaptation to a host-associated lifestyle. As a microaerophilic organism, H. pylori OK113 requires a reduced oxygen environment for growth, a trait that likely facilitates its colonization in the gastric mucosa where oxygen levels are lower compared to the external environment.↵↵The specific habitat of H. pylori OK113 emphasizes its potential role in the gastrointestinal tract, where it may interact with host tissues and other microbial communities. Understanding the ecological niche of this strain can provide insights into its potential contributions to the microbial diversity of the stomach, as well as its interactions with the host's immune system. The adaptation to a highly specific microaerophilic environment may also impact its metabolic pathways, influencing how it utilizes available nutrients within the host. Further investigation into the unique traits of H. pylori OK113 could reveal novel aspects of its biology and ecology that are crucial for understanding its role in human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1248725 NC_020508.1 Bac0014908 Paraglaciecola psychrophila 170 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Paraglaciecola Paraglaciecola psychrophila 1129794 NC_020514.1 Bac0014909 Mycobacterium tuberculosis str. Erdman = ATCC 35801 "Mycobacterium tuberculosis strain Erdman (ATCC 35801) is a Gram-positive, rod-shaped bacterium that typically occurs as single cells. This strain is a member of the Mycobacterium genus and is characterized by its aerobic metabolism, requiring oxygen for growth. Optimal growth occurs at a temperature of 37.0°C, which aligns with its adaptation to the human host environment.↵↵As a chemoorganotroph, M. tuberculosis Erdman utilizes organic compounds as its energy source, which is reflective of its nutritional requirements in host-associated habitats. The bacterium's unique cell wall composition, rich in mycolic acids, contributes to its resilience in hostile environments and plays a critical role in its pathogenicity, although specific pathogenic traits are not discussed here.↵↵The ecological niche of M. tuberculosis Erdman is primarily associated with human hosts, indicating a specialized adaptation to a parasitic lifestyle. This association highlights the potential for co-evolution between the microbe and its human host, wherein the bacterium has developed mechanisms to evade the host immune response while relying on the host's metabolic resources for survival. Understanding the specific adaptations of this strain can provide insights into the broader ecological dynamics of Mycobacterium tuberculosis within human populations." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 652616 NC_020559.1 Bac0014910 Micavibrio aeruginosavorus EPB Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus 349215 NC_020812.1 Bac0014911 Pseudomonas sp. ATCC 13867 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. ATCC 13867 1294143 NC_020829.1 Bac0014912 Polaribacter sp. MED152 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. MED152 313598 NC_020830.1 Bac0014913 Thalassolituus oleivorans MIL-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Thalassolituus Thalassolituus oleivorans 1298593 NC_020888.1 Bac0014914 Thermoplasmatales archaeon BRNA1 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon BRNA1 1054217 NC_020892.1 Bac0014915 Mycoplasmopsis fermentans PG18 "Mycoplasmopsis fermentans PG18 is a Gram-negative bacterium that predominantly inhabits the genitourinary tract. Characterized by its lack of a cell wall, this microbe exhibits a unique structural composition that influences its interactions within its ecological niche. Mycoplasmopsis fermentans PG18 is part of the Mycoplasmataceae family, which is known for the minimalistic genome and metabolic capabilities of its members, allowing for a diverse range of survival strategies in varying environments.↵↵The association of Mycoplasmopsis fermentans PG18 with the genitourinary tract suggests potential roles in the microbiome of this specific habitat, which may include influencing local microbial community dynamics or contributing to metabolic processes. Given its Gram-negative status, it is likely to possess an outer membrane that could facilitate specific interactions with host tissues or other microbes in the environment, although the specifics of these interactions remain to be elucidated.↵↵Mycoplasmopsis fermentans PG18’s presence in the genitourinary tract may indicate an ecological role in maintaining the balance of microbial populations, potentially influencing health and disease states in the host. Further research into its metabolic capabilities and interactions within this niche could provide insights into its contribution to the overall homeostasis of the genitourinary microbiome." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans Negative genitourinary tract 496833 NC_021002.1 Bac0014916 Coprococcus catus GD/7 "Coprococcus catus GD/7 is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph and is adapted to anaerobic environments. This microbe is part of the intestinal microflora of animals, where it plays a potential role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Given its anaerobic nature, Coprococcus catus GD/7 thrives in the oxygen-depleted conditions typically found in the intestines, contributing to the complex microbial ecosystem that aids in digestion and nutrient absorption. The presence of such anaerobic bacteria is crucial for maintaining gut homeostasis and overall microbial diversity. The metabolic activities of Coprococcus catus GD/7 may also influence host metabolism and immune responses, highlighting its significance within the gut microbiome. Understanding the specific contributions of this species could provide insights into the intricate relationships between gut bacteria and host physiology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudocoprococcus Pseudocoprococcus catus Positive Cocci No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 116085 NC_021009.1 Bac0014917 Eubacterium siraeum 70/3 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae [Eubacterium] siraeum 657319 NC_021011.1 Bac0014918 Ruminococcus sp. SR1/5 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. SR1/5 657323 NC_021014.1 Bac0014919 Butyrate-producing bacterium SS3/4 Bacillati Bacillota Clostridia Eubacteriales butyrate-producing bacterium SS3/4 245014 NC_021035.1 Bac0014920 Eubacterium siraeum V10Sc8a Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae [Eubacterium] siraeum 717961 NC_021043.1 Bac0014921 Agathobacter rectalis M104/1 "Agathobacter rectalis M104/1 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, utilizing organic compounds as its energy source. This species prefers an optimal growth temperature of 37.0°C and exhibits anaerobic metabolism, indicating its adaptation to environments devoid of oxygen. ↵↵A. rectalis M104/1 is found in multiple habitats, suggesting a versatile ecological role, potentially including the human gut microbiome where anaerobic conditions prevail. The presence of this microbe in diverse environments may reflect its ability to contribute to the degradation of complex organic materials, thereby facilitating nutrient cycling. Its nonsporulating nature implies a reliance on stable conditions for survival, as it does not form spores to endure adverse environments.↵↵Understanding the metabolic capabilities and ecological niches of A. rectalis M104/1 may provide insights into its role in microbial communities, particularly in anaerobic ecosystems where it may influence the dynamics of organic matter decomposition and nutrient availability. Further studies could elucidate its interactions with other microbial species and its potential contributions to gastrointestinal health or disturbances." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 657317 NC_021044.1 Bac0014922 Saccharolobus islandicus LAL14/1 "Saccharolobus islandicus LAL14/1 is a heterotrophic cocci-shaped microbe characterized by its arrangement in singles and its optimal growth temperature of 75.0 °C. This organism exhibits facultative aerobic respiration, enabling it to thrive in environments where oxygen availability fluctuates. Its specialized habitat suggests an adaptation to specific ecological niches, potentially those found in high-temperature environments such as hot springs or geothermal areas, where it may play a crucial role in the microbial community dynamics.↵↵The ability of S. islandicus LAL14/1 to utilize a variety of organic substrates as an energy source may facilitate its survival in these extreme conditions, allowing it to contribute to nutrient cycling in its habitat. Additionally, the facultative aerobic nature of this microbe implies a metabolic flexibility that could provide competitive advantages in environments undergoing rapid changes in oxygen levels. Its unique adaptations may also make it a valuable candidate for biotechnological applications, particularly in processes that require the breakdown of organic compounds under thermophilic conditions. Understanding the ecological roles of such extremophiles is vital, as they may offer insights into the evolution of life in extreme environments and potential biotechnological innovations." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus Cocci No 1 1 Facultative aerobe 75 Heterotroph Hyperthermophilic Specialized Free living Singles 1241935 NC_021058.1 Bac0014923 Archaeoglobus sulfaticallidus PM70-1 Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus sulfaticallidus 387631 NC_021169.1 Bac0014924 Hyphomicrobium denitrificans 1NES1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium denitrificans 670307 NC_021172.1 Bac0014925 Streptomyces microflavus DSM 40593 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces microflavus 29 mesophilic 1303692 NC_021177.1 Bac0014926 Actinoplanes sp. N902-109 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes sp. N902-109 649831 NC_021191.1 Bac0014927 Helicobacter pylori UM037 "Helicobacter pylori UM037 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found within its host environment. H. pylori UM037 is predominantly associated with the gastric mucosa of its host, where it can inhabit and adapt to the unique microenvironment of the stomach, including its varied pH levels.↵↵As a microaerophilic organism, H. pylori UM037 requires reduced levels of oxygen for growth, which is consistent with its adaptation to the oxygen-limited conditions present in the gastric niche. The bacterium's spiral shape facilitates motility, allowing it to navigate the viscous environment of gastric mucus and colonize the epithelial lining effectively.↵↵The habitat of H. pylori UM037 suggests a specialized ecological role, as it may influence the gastric microbiome and interact with host immune responses. Understanding the specific traits of H. pylori UM037 can provide insights into its ecological significance and potential implications for host health, particularly in relation to gastric conditions. Further studies on this strain could elucidate its functional roles within the host-associated microbiota and its contributions to the overall microbial diversity in the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1321939 NC_021217.3 Bac0014928 Klebsiella pneumoniae subsp. rhinoscleromatis SB3432 "Klebsiella pneumoniae subsp. rhinoscleromatis SB3432 is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This microbe is classified as a nonsporulating organism, indicating that it does not form spores as a means of survival under unfavorable conditions. K. pneumoniae subsp. rhinoscleromatis SB3432 exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments, which is advantageous for its survival within host-associated habitats.↵↵The optimal growth temperature for this strain is approximately 37.0 degrees Celsius, aligning with the average body temperature of many mammals, suggesting a potential adaptation to a host-associated lifestyle. As a chemoheterotroph, it derives its energy from organic compounds, indicating a dependence on host-derived nutrients for growth and metabolism.↵↵This strain's habitat is primarily host-associated, suggesting that it may play a role in the complex microbial communities found within specific hosts. The combination of its facultative anaerobic nature and its nutritional requirements may allow K. pneumoniae subsp. rhinoscleromatis SB3432 to occupy niches that are dynamic and variable, which could be significant for understanding its interactions with host immune systems and the overall microbiome. This adaptability highlights the potential for this microbe to influence host health and disease dynamics through its metabolic activities in a host-associated environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 861365 NC_021231.1 Bac0014929 Fusobacterium animalis 4_8 "Fusobacterium animalis 4_8 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating anaerobe, with an optimal growth temperature of 37.0°C. This microbe is primarily host-associated, indicating a close relationship with its host organisms, where it likely resides in anaerobic environments such as the gastrointestinal tract. ↵↵The anaerobic nature of Fusobacterium animalis 4_8 suggests that it relies on fermentation or other anaerobic metabolic pathways for energy production, adapting to the low-oxygen conditions typical of its habitat. The optimal temperature of 37.0°C aligns with the physiological temperature of many mammalian hosts, further supporting its adaptation to a host-associated life cycle. ↵↵The specific ecological role of Fusobacterium animalis 4_8 within its host remains to be fully elucidated; however, its presence in the gastrointestinal environment may contribute to the complex microbial ecosystem, potentially influencing host digestion or microbial interactions. Understanding its precise interactions within the host microbiome could provide insights into the broader implications of Fusobacterium species in health and disease dynamics." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 469607 NC_021277.1 Bac0014930 Spiribacter salinus M19-40 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Spiribacter Spiribacter salinus 1260251 NC_021291.1 Bac0014931 Salinarchaeum sp. Harcht-Bsk1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronoarchaeaceae Salinarchaeum Salinarchaeum sp. Harcht-Bsk1 1333523 NC_021313.1 Bac0014932 Pseudomonas putida H8234 "Pseudomonas putida H8234 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its ability to utilize organic compounds as energy sources for growth and metabolism. P. putida H8234 is commonly found in soil and wastewater environments, where it can play a significant role in the degradation of organic pollutants.↵↵As a facultative anaerobe, P. putida H8234 exhibits metabolic flexibility, allowing it to thrive in both aerobic and anaerobic conditions. This adaptability enhances its survival in diverse ecological niches, particularly in environments impacted by organic waste. The presence of this bacterium in wastewater treatment systems suggests its potential utility in bioremediation processes, where it may contribute to the breakdown of environmental contaminants.↵↵Furthermore, the isolation of Pseudomonas putida H8234 from soil and wastewater habitats underscores its ecological importance in nutrient cycling and ecosystem function. Its capacity to metabolize various organic substrates may also facilitate the transformation of waste products into less harmful compounds, thereby benefiting ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles 1331671 NC_021491.1 Bac0014933 Alteromonas mediterranea UM7 "Alteromonas mediterranea UM7 is a Gram-negative, rod-shaped bacterium that exhibits heterotrophic metabolism and is adapted to aquatic environments. As an aerobic organism, it requires oxygen for its metabolic processes, positioning it within a specific ecological niche where oxygen is readily available. ↵↵The morphology of A. mediterranea UM7, characterized by its rod shape, may influence its motility and interactions within the aquatic microbial community. This bacterium’s heterotrophic nature indicates its reliance on organic compounds for energy, suggesting a role in the decomposition of organic matter within its habitat. The aquatic habitat of A. mediterranea UM7 highlights its potential involvement in nutrient cycling and the dynamics of microbial populations in marine systems.↵↵Furthermore, the ability of A. mediterranea UM7 to thrive in oxygen-rich waters may provide insights into its ecological interactions, particularly its potential contribution to the biogeochemical processes that occur in these environments. This could include the degradation of organic pollutants or the influence on the availability of nutrients for other microorganisms, thereby underscoring the importance of A. mediterranea UM7 in maintaining the health and functionality of aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Aquatic Free living 1300258 NC_021713.1 Bac0014934 Spiroplasma taiwanense CT-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma taiwanense microaerophile 1276220 NC_021832.1 Bac0014935 Spiroplasma diminutum CUAS-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma diminutum microaerophile 1276221 NC_021833.1 Bac0014936 Limosilactobacillus reuteri TD1 "Limosilactobacillus reuteri TD1 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This microbe is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which enhances its adaptability to various environments. Limosilactobacillus reuteri TD1 has been observed in multiple habitats, suggesting a broad ecological niche that may include diverse substrates or host-associated environments.↵↵The facultative anaerobic characteristic of L. reuteri TD1 allows it to thrive in fluctuating oxygen conditions, which is particularly advantageous in complex ecosystems such as the gastrointestinal tracts of animals and humans. This adaptability may facilitate its roles in fermentation processes, contributing to the production of beneficial metabolites. Moreover, the chain arrangement of cells can enhance the surface area for nutrient absorption and may influence its interactions within microbial communities.↵↵The versatility of Limosilactobacillus reuteri TD1 in various habitats highlights its potential significance in promoting microbial diversity and stability in its environments. Understanding the ecological roles and functional capabilities of this strain could provide insights into its contributions to gut health and fermentation processes in broader ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1358027 NC_021872.1 Bac0014937 Streptococcus lutetiensis 033 "Streptococcus lutetiensis 033 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic growth characteristics. This organism's ability to thrive in both aerobic and anaerobic conditions allows it to adapt to various environments, which is a notable trait among members of the Streptococcus genus. Its coccoid morphology suggests that it may form clusters or chains, a common arrangement observed in many streptococci.↵↵The facultative anaerobic lifestyle of S. lutetiensis 033 indicates that it can metabolize in the presence or absence of oxygen, utilizing fermentation or aerobic respiration as conditions dictate. This metabolic flexibility is significant for its survival in diverse habitats, potentially including human-related environments or other ecological niches where oxygen levels fluctuate.↵↵While the pathogenicity and specific ecological roles of S. lutetiensis 033 have not been detailed, its physiological traits suggest that it may interact with other microbial communities or contribute to the microbiome of its habitat. The ability to adapt to varying oxygen levels may also imply a role in nutrient cycling or interactions with other microbial species in its environment. Future research could elucidate its ecological significance and potential applications in biotechnology or health-related fields." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus lutetiensis Positive Cocci Facultative anaerobe 1076934 NC_021900.1 Bac0014938 Acetobacter pasteurianus 386B "Acetobacter pasteurianus 386B is a Gram-negative, nonsporulating bacterium that functions as a chemoheterotroph, utilizing organic substrates for energy. This strain is primarily isolated from dairy environments, indicating its adaptation to habitats rich in lactose and other dairy-related compounds. It exhibits optimal growth at a temperature of 30.0°C, which suggests a preference for mesophilic conditions typical of many fermentation processes.↵↵As an aerobic organism, A. pasteurianus 386B requires oxygen for its metabolic activities, which aligns with its role in the fermentation of various substrates, often contributing to the production of acetic acid. The presence of this bacterium in dairy products highlights its significance in the food industry, particularly in the fermentation of dairy products where it may influence flavor and preservation.↵↵A unique aspect of A. pasteurianus 386B is its potential role in biotechnological applications, particularly in the production of vinegar and other fermented dairy products, where its metabolic pathways could be harnessed for enhanced flavor profiles and preservation methods. Its isolation from dairy environments underscores the intricate relationships between microbial communities and food substrates, emphasizing the importance of specific microbial strains in fermentation and food quality." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1266844 NC_021976.1 Bac0014939 Bacillus velezensis UCMB5033 "Bacillus velezensis UCMB5033 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in terrestrial environments as an aerobic organism. This strain is notable for its ability to form endospores, a trait that allows it to endure adverse conditions by entering a dormant state. The capacity for sporulation not only contributes to its survival but also plays a significant role in its ecological versatility in soil habitats.↵↵As an aerobic species, Bacillus velezensis UCMB5033 requires oxygen for its metabolic processes, which implies a role in the biogeochemical cycling of nutrients within its terrestrial niche. The presence of this bacterium in soil ecosystems suggests potential interactions with other microbial communities and plant systems, possibly contributing to soil health and fertility. Its ability to sporulate may also facilitate its dissemination across different environments, enhancing its ecological resilience.↵↵This organism may serve as a model for studying the mechanisms of sporulation and survival in aerobic conditions, providing insights into microbial adaptations in terrestrial habitats. Furthermore, its ecological significance could extend to applications in agriculture or bioremediation, where its sporulation ability might be harnessed for beneficial uses in soil management and plant growth promotion." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus velezensis Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1338518 NC_022075.1 Bac0014940 Thermococcus litoralis DSM 5473 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus litoralis 523849 NC_022084.1 Bac0014941 Geobacillus genomosp. 3 "Geobacillus genomosp. 3 is a rod-shaped bacterium characterized by its thermophilic nature, thriving at elevated temperatures typically found in geothermal environments. Members of the Geobacillus genus are known for their ability to withstand high temperatures, which is indicative of their adaptation to hot habitats such as hot springs and compost heaps. This organism is notable for its ability to produce enzymes that are not only thermally stable but also exhibit activity at high temperatures, making them of interest for various industrial applications, including biotechnology and bioremediation.↵↵The rod shape of Geobacillus genomosp. 3 suggests a structural adaptation that may enhance its motility and nutrient acquisition in the competitive microbial communities of its natural habitat. Furthermore, the thermophilic characteristics of this microbe imply that it may play a significant role in the decomposition processes in high-temperature ecosystems, contributing to nutrient cycling and organic matter breakdown.↵↵In summary, Geobacillus genomosp. 3 exemplifies the unique adaptations of thermophilic bacteria, underscoring the ecological significance of such microorganisms in extreme environments. Its rod shape and thermal stability not only reflect its evolutionary niche but also highlight potential biotechnological applications where high-temperature processes are advantageous." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus genomosp. 3 Rod 1921421 NC_022092.1 Bac0014942 Helicobacter pylori SouthAfrica20 "Helicobacter pylori SouthAfrica20 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. It thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, indicating its adaptation to a host-associated habitat. This strain, like other members of the Helicobacter genus, is primarily found in the gastric environment of its host, where it likely plays a role in the complex microbiota of the stomach.↵↵The microaerophilic nature of Helicobacter pylori SouthAfrica20 suggests that it requires reduced levels of oxygen for optimal growth, which is consistent with its colonization of the gastric mucosa, an environment that is relatively low in oxygen compared to other bodily compartments. This adaptation not only facilitates its survival but may also influence the microbial dynamics within the gastric niche, potentially affecting the overall gastric microbiome composition.↵↵Overall, Helicobacter pylori SouthAfrica20 exemplifies the intricate relationship between microbial physiology and host-associated habitats, highlighting the importance of environmental adaptations in the evolution of pathogenic and commensal relationships within the human microbiome. Further studies on this strain may provide insights into its interactions within the gastric ecosystem and its potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1352356 NC_022130.1 Bac0014943 Corynebacterium argentoratense DSM 44202 "Corynebacterium argentoratense DSM 44202 is a Gram-positive, rod-shaped bacterium that exhibits microaerophilic growth characteristics and does not form spores. This species thrives optimally at a temperature of 29.0°C, suggesting a potential adaptation to specific environmental niches that reflect moderate thermal conditions. The microaerophilic nature of C. argentoratense indicates that it requires reduced levels of oxygen for growth, which may influence its ecological interactions and habitat preferences.↵↵The non-spore-forming trait of this bacterium may limit its survival strategies compared to spore-forming relatives, emphasizing a reliance on specific environmental conditions for persistence. Its morphology and oxygen requirements position C. argentoratense within a niche that could be associated with environments rich in organic material, where oxygen levels fluctuate. ↵↵Given these traits, C. argentoratense may play a role in biogeochemical cycles, particularly in environments where microaerophilic conditions prevail, such as in certain soil profiles or within decaying organic matter. This ecological insight highlights the potential for C. argentoratense to contribute to microbial community dynamics and nutrient cycling in its habitat, although further studies would be necessary to elucidate its specific ecological roles and interactions." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium argentoratense Gram-positive rod non-motile microaerophile 29 mesophilic non-spore-forming 1348662 NC_022198.1 Bac0014944 Vibrio alginolyticus NBRC 15630 = ATCC 17749 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus Marine Animal 1219076 NC_022359.1 Bac0014945 Ralstonia pickettii DTP0602 "Ralstonia pickettii DTP0602 is a Gram-negative, rod-shaped bacterium that exhibits heterotrophic metabolism and requires aerobic conditions for growth. This strain is part of the diverse Ralstonia genus, which is known for its adaptability to various environments, indicated by its presence in multiple habitats. ↵↵As a heterotroph, R. pickettii DTP0602 relies on organic compounds as its energy source, which allows it to thrive in environments rich in organic matter. The ability to utilize various organic substrates may contribute to its ecological versatility, enabling it to colonize a range of niches. ↵↵The aerobic nature of this bacterium indicates a preference for oxygen-rich environments, which may influence its distribution and interactions within microbial communities. Understanding the metabolic capabilities and habitat preferences of R. pickettii DTP0602 can provide insights into its role in biogeochemical cycles, particularly in environments where organic material is abundant. This strain exemplifies the ecological significance of heterotrophic bacteria in nutrient cycling and decomposition processes, highlighting their essential contributions to ecosystem functioning." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii Negative Rod Yes 1 2 Aerobe Heterotroph - Heterotroph Mesophilic Multiple Free living 1366050 NC_022513.1 Bac0014946 Vibrio nigripulchritudo Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio nigripulchritudo 28173 NC_022528.1 Bac0014947 Plautia stali symbiont Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Plautia stali symbiont 891974 NC_022533.1 Bac0014948 Gloeobacter kilaueensis JS1 Bacillati Cyanobacteriota Cyanophyceae Gloeobacterales Gloeobacteraceae Gloeobacter Gloeobacter kilaueensis 1183438 NC_022600.1 Bac0014949 Staphylococcus aureus subsp. aureus Z172 "Staphylococcus aureus subsp. aureus Z172 is a Gram-positive cocci bacterium characterized by its arrangement in clusters or singles. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. S. aureus Z172 is typically associated with host organisms, indicating a potential symbiotic or pathogenic relationship, although the specific nature of this interaction is not detailed in the provided traits.↵↵This strain's optimal growth temperature is notably low, at 3.0 °C, suggesting an adaptation to cooler environments or specific niches within host-associated habitats. Such low-temperature adaptability could provide ecological advantages, enabling S. aureus Z172 to colonize and persist in environments that are inhospitable to many other microbes. The ability to grow in clusters may also facilitate its survival and proliferation within host tissues by enhancing its resilience against host immune responses or antimicrobial treatments.↵↵Overall, the unique combination of traits exhibited by Staphylococcus aureus subsp. aureus Z172 underscores its potential significance in specific ecological contexts, particularly in cooler environments where traditional pathogenic strains may struggle to thrive. Understanding these traits could provide insights into its role within microbial communities associated with hosts and its potential impact on host health and disease." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 1406863 NC_022605.1 Bac0014950 Carnobacterium inhibens subsp. gilichinskyi Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium inhibens 1266845 NC_022606.1 Bac0014951 Actinoplanes friuliensis DSM 7358 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes friuliensis aerobic 1246995 NC_022657.1 Bac0014952 Spiribacter curvatus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Spiribacter Spiribacter curvatus 1335757 NC_022664.1 Bac0014953 Candidatus Caldiarchaeum subterraneum Thermoproteati Nitrososphaerota Candidatus Caldarchaeales Candidatus Caldarchaeaceae Candidatus Caldarchaeum Candidatus Caldarchaeum subterraneum 311458 NC_022786.1 Bac0014954 Enterococcus mundtii QU 25 "Enterococcus mundtii QU 25 is a nonsporulating, facultatively anaerobic bacterium characterized by its cocci shape and chemoheterotrophic metabolism. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found in warm-blooded hosts. Enterococcus mundtii is capable of utilizing a variety of organic compounds as energy sources, reflecting its adaptability to diverse habitats. ↵↵The facultative anaerobic nature of E. mundtii QU 25 allows it to survive in both aerobic and anaerobic environments, further enhancing its ecological versatility. This adaptability suggests a potential role in various ecological niches, possibly including human-associated microbiomes, as well as in the gut microbiota of other mammals. The presence of Enterococcus species in multiple habitats emphasizes their importance in microbial communities and their potential interactions with other microorganisms.↵↵Understanding the traits of Enterococcus mundtii QU 25 can provide valuable insights into its ecological roles, particularly in environments where it coexists with other microbial populations. Its ability to thrive across various conditions may influence nutrient cycling and contribute to the overall dynamics of microbial communities in those habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus mundtii Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1300150 NC_022881.1 Bac0014955 Lactobacillus johnsonii N6.2 "Lactobacillus johnsonii N6.2 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions. This microbe thrives optimally at a temperature of 25.0°C and is host-associated, suggesting that it is primarily found in association with specific hosts rather than in free-living environments.↵↵Lactobacillus species, including L. johnsonii N6.2, are well-known for their role in fermentation processes and their potential benefits in gut health, often contributing to the maintenance of a balanced microbiome. The chain arrangement of L. johnsonii N6.2 may facilitate its interactions with the host's intestinal epithelium, potentially enhancing its colonization and metabolic activities within the host environment.↵↵Understanding the growth conditions and structural traits of L. johnsonii N6.2 can provide insights into its functional role within host-associated ecosystems, particularly in the context of microbial community dynamics and the maintenance of gut homeostasis. The bacterium's facultative anaerobic nature and optimal growth at moderate temperatures imply adaptability to various microenvironments within the host, which may influence its interactions with other microbial species and the host's immune response." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains 1408186 NC_022909.1 Bac0014956 Hyphomicrobium nitrativorans NL23 "Hyphomicrobium nitrativorans NL23 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 32.0°C. This organism is part of the broader Hyphomicrobium genus, known for its unique metabolic capabilities, particularly in the context of nitrogen cycling. The aerobic nature of H. nitrativorans NL23 suggests that it requires oxygen for growth, which is consistent with its role in environments where oxygen is readily available.↵↵As a member of the nitrogen-fixing community, H. nitrativorans NL23 may play a significant role in converting nitrogen compounds, potentially contributing to the nitrogen cycle in its native habitat. The specific metabolic pathways utilized by this species allow it to utilize nitrates, which may be a key aspect of its ecological function. The ability to thrive at a moderate temperature indicates that this organism may be well-adapted to temperate environments, where it could interact with other microbial communities to influence nutrient dynamics.↵↵Understanding the traits of Hyphomicrobium nitrativorans NL23 can enhance our comprehension of microbial interactions in nitrogen-rich ecosystems, highlighting the importance of aerobic bacteria in maintaining nitrogen balance and promoting soil health. The specific physiological characteristics of this bacterium underscore its potential significance in biogeochemical processes, particularly in aerobic environments where nitrogen compounds are prevalent." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobium Hyphomicrobium nitrativorans Gram-negative rod aerobic 32 mesophilic 1029756 NC_022997.1 Bac0014957 Mycoplasmoides gallisepticum S6 Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides gallisepticum 1006581 NC_023030.2 Bac0014958 Cronobacter malonaticus Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter malonaticus homes 413503 NC_023032.1 Bac0014959 Salinispira pacifica Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Salinispira Salinispira pacifica anaerobic 1307761 NC_023035.1 Bac0014960 Mycolicibacterium neoaurum VKM Ac-1815D Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium neoaurum 700508 NC_023036.2 Bac0014961 Methanobacterium sp. MB1 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. MB1 1379702 NC_023044.1 Bac0014962 Magnetospirillum gryphiswaldense MSR-1 v2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum gryphiswaldense microaerophile 1430440 NC_023065.1 Bac0014963 Sulfolobus acidocaldarius SUSAZ "Sulfolobus acidocaldarius SUSAZ is a coccoid archaeon characterized by its ability to thrive as a lithotrophic aerobe at an optimal temperature of 70.0°C. This organism is typically found in specialized habitats, which likely include extreme environments such as acidic hot springs, where it plays a crucial role in biogeochemical processes. ↵↵As a lithotroph, S. acidocaldarius SUSAZ derives its energy from inorganic compounds, which positions it as an important player in microbial communities that contribute to the cycling of elements in extreme environments. The organism's single-cell arrangement suggests a unique adaptation strategy that may facilitate survival and metabolic efficiency under the high-temperature and low-nutrient conditions typical of its habitat. ↵↵The specialized ecological niche occupied by S. acidocaldarius SUSAZ not only underscores its role in extremophilic microbial ecosystems but also highlights the potential for unique metabolic pathways that could be explored for biotechnological applications, such as bioleaching or bioremediation. Understanding the traits and behaviors of this archaeon further elucidates the adaptive strategies of life in extreme conditions, informing broader ecological and evolutionary studies within microbial diversity." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius Cocci No 1 1 Aerobe 70 Lithotroph Thermophilic Specialized Free living Singles 1435377 NC_023069.1 Bac0014964 Pseudomonas monteilii SB3101 "Pseudomonas monteilii SB3101 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is classified as an aerobic organism. This nonsporulating microbe is primarily found in soil environments, where it plays a role in the degradation of organic materials. The ability to thrive in aerobic conditions suggests that P. monteilii SB3101 may contribute to the cycling of nutrients and the maintenance of soil health through its metabolic activities.↵↵As a member of the diverse genus Pseudomonas, which is known for its metabolic versatility, Pseudomonas monteilii SB3101 may engage in various biochemical processes that facilitate the breakdown of complex organic compounds. Its habitat in soil allows it to interact with other microorganisms and participate in complex ecological networks, potentially influencing soil structure and fertility. This underscores the importance of studying such microorganisms, as they can serve as indicators of soil quality and ecosystem functioning. Understanding the specific roles and interactions of Pseudomonas monteilii SB3101 within its environment could provide insights into the ecological significance of soil-dwelling bacteria in nutrient cycling and environmental sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monteilii Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 1435058 NC_023076.1 Bac0014965 Halothiobacillus sp. 20-53-49 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Halothiobacillaceae Halothiobacillus Halothiobacillus sp. 20-53-49 1970383 NCAR00000000.1 Bac0014966 Acidiphilium sp. 20-67-58 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidiphilium Acidiphilium sp. 20-67-58 1970291 NCAS00000000.1 Bac0014967 Acidocella sp. 20-57-95 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidocella Acidocella sp. 20-57-95 1970301 NCAT00000000.1 Bac0014968 Acidithiobacillus ferrivorans Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrivorans 160808 NCBC00000000.1 Bac0014969 Acidobacteria bacterium 21-70-11 Pseudomonadati Acidobacteriota Acidobacteria bacterium 21-70-11 1970485 NCBG00000000.1 Bac0014970 Acidiphilium sp. 21-60-14 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acidocellaceae Acidiphilium Acidiphilium sp. 21-60-14 1970292 NCBH00000000.1 Bac0014971 Hydrogenophilales bacterium 12-61-10 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium 12-61-10 1970515 NCCT00000000.1 Bac0014972 Sphingomonadales bacterium 12-68-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadales bacterium 12-68-11 1970586 NCCV00000000.1 Bac0014973 Brevundimonas subvibrioides Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas subvibrioides aerobic 74313 NCEB00000000.1 Bac0014974 Alphaproteobacteria bacterium 32-64-14 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium 32-64-14 1970492 NCEM00000000.1 Bac0014975 Sphingomonadales bacterium 32-64-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadales bacterium 32-64-17 1970592 NCEO00000000.1 Bac0014976 Acidovorax sp. 35-64-16 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 35-64-16 1970312 NCFM00000000.1 Bac0014977 Polaromonas sp. 35-63-35 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas sp. 35-63-35 1970418 NCFQ00000000.1 Bac0014978 Hydrogenophilales bacterium 28-61-11 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium 28-61-11 1970529 NCGA00000000.1 Bac0014979 Sphingomonas sp. 28-62-20 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. 28-62-20 1970433 NCGH00000000.1 Bac0014980 Sphingobacteriales bacterium 16-39-50 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriales bacterium 16-39-50 1970581 NCHA00000000.1 Bac0014981 Methylotenera sp. 24-45-7 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Methylotenera Methylotenera sp. 24-45-7 1970397 NCHI00000000.1 Bac0014982 Hydrogenophilales bacterium 17-61-9 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium 17-61-9 1970524 NCIF00000000.1 Bac0014983 Sulfurovum sp. 39-42-12 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. 39-42-12 1970446 NCJD00000000.1 Bac0014984 Rhodospirillales bacterium 39-66-50 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillales bacterium 39-66-50 1970570 NCJJ00000000.1 Bac0014985 Idiomarina sp. 34-48-12 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina sp. 34-48-12 1970393 NCJS00000000.1 Bac0014986 Hyphomonas sp. 34-62-18 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas sp. 34-62-18 1970392 NCJT00000000.1 Bac0014987 Halothiobacillus sp. 15-55-196 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Halothiobacillaceae Halothiobacillus Halothiobacillus sp. 15-55-196 1970382 NCKC00000000.1 Bac0014988 Thiomonas sp. 13-64-67 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Thiomonas Thiomonas sp. 13-64-67 1970447 NCKP00000000.1 Bac0014989 Serratia marcescens strain RPH1 "Serratia marcescens strain RPH1 is a nonsporulating, Gram-negative rod that exhibits facultative anaerobic respiration and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, showcasing metabolic versatility that allows it to inhabit a variety of environments. The ability to grow in both aerobic and anaerobic conditions further enhances its adaptability, enabling it to exploit diverse ecological niches where organic substrates are available. ↵↵Serratia marcescens is recognized for its capacity to survive in multiple habitats, suggesting a resilience that may contribute to its persistence in both natural ecosystems and man-made environments. The strain's metabolic profile and temperature preference indicate a potential for growth in warm environments, which could include various human-associated niches, as well as decaying organic material in natural settings. ↵↵Given its ecological adaptability and metabolic flexibility, Serratia marcescens strain RPH1 may play a significant role in nutrient cycling within its habitats, potentially contributing to the breakdown of organic matter and influencing microbial community dynamics. Understanding the traits of this strain can provide insights into its ecological functions and interactions within its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 NCQI00000000.1 Bac0014990 Microbacterium sp. LEMMJ01 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. LEMMJ01 1978350 NCTV00000000.1 Bac0014991 Streptococcus oralis subsp. tigurinus strain RH_49702_11 "Streptococcus oralis subsp. tigurinus strain RH_49702_11 is a Gram-positive cocci that typically forms pairs and chains, indicating a characteristic arrangement common to many streptococcal species. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is particularly advantageous for survival in diverse host-associated habitats. ↵↵As a member of the Streptococcus genus, S. oralis subsp. tigurinus is primarily associated with the oral cavity and may play a significant role in the complex microbial communities found within the human mouth. The facultative anaerobic nature of this strain suggests that it can adapt to varying oxygen levels, which is essential for its survival in the dynamic environment of the oral microbiome, where oxygen availability can fluctuate.↵↵This strain may contribute to various ecological functions, such as the maintenance of oral health or potential involvement in biofilm formation on dental surfaces. Given its habitat and traits, further studies could elucidate its interactions with other oral microorganisms and its influence on host health, particularly in relation to the balance between commensalism and pathogenicity in the oral ecosystem." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUA00000000.1 Bac0014992 Streptococcus oralis subsp. tigurinus strain RH_48720_11 "Streptococcus oralis subsp. tigurinus strain RH_48720_11 is a Gram-positive coccus that typically arranges itself in pairs and chains. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, allowing it to adapt to various host-associated habitats. This adaptability suggests a potential versatility in metabolic processes, enabling it to exploit different substrates depending on the oxygen availability within the host environment.↵↵The presence of S. oralis subsp. tigurinus in host-associated habitats implies a close association with the host's microbiome, potentially contributing to the overall microbial community dynamics. This strain may play roles in maintaining oral health or contributing to the microbial diversity present in the oral cavity and other associated sites. Further investigations could elucidate its interactions within the host microbiome and its potential implications for host health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUB00000000.1 Bac0014993 Streptococcus oralis subsp. tigurinus strain OD_326128_08 "Streptococcus oralis subsp. tigurinus strain OD_326128_08 is a Gram-positive coccus that typically forms pairs and chains. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, suggesting a versatile metabolic capability that allows it to adapt to various host-associated habitats. This adaptability is particularly significant in the context of the oral microbiome, where members of the Streptococcus genus, including S. oralis, are commonly found.↵↵The host-associated nature of this strain indicates its potential role in the complex microbial communities present in the oral cavity, where it may contribute to normal flora as well as interact with other microbial species. The ability to form chains and pairs may facilitate its colonization and persistence within these communities. Understanding the ecological role of S. oralis subsp. tigurinus strain OD_326128_08 could provide insights into its interactions within the oral microbiome, particularly in relation to its counterparts in both health and disease states. Further studies may elucidate its specific contributions to oral health and its potential involvement in maintaining microbial homeostasis." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUF00000000.1 Bac0014994 Streptococcus oralis subsp. tigurinus strain OD_314165_09 "Streptococcus oralis subsp. tigurinus strain OD_314165_09 is a Gram-positive coccus that typically appears in pairs or chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is characteristic of many members of the Streptococcus genus. Its habitat is primarily host-associated, suggesting that it may be part of the normal microbiota in various host organisms, potentially including humans.↵↵The coccoid morphology and the tendency to form chains or pairs may suggest a role in biofilm formation, a common trait among oral streptococci. This could indicate its involvement in dental plaque development or other host-associated ecosystems where it might contribute to microbial community dynamics. Further studies may reveal its specific interactions within these communities, as well as its potential role in health and disease in the host organisms it associates with. Understanding the ecological implications of Streptococcus oralis subsp. tigurinus strain OD_314165_09 could provide insights into its contributions to oral microbiome stability and function." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUG00000000.1 Bac0014995 Streptococcus oralis subsp. oralis strain RH_57980_07 "Streptococcus oralis subsp. oralis strain RH_57980_07 is a Gram-positive coccus that typically arranges itself in pairs or chains, reflecting its characteristic morphology. This strain is a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments, which is a common trait among oral streptococci. The habitat of S. oralis subsp. oralis strain RH_57980_07 is host-associated, suggesting its presence in biological niches closely linked to host organisms, particularly within the human oral cavity.↵↵As a member of the Streptococcus genus, this strain is likely involved in various interactions with both the host and other microbial communities within the oral microbiome. Its ability to thrive in fluctuating oxygen levels may contribute to its resilience in the complex environment of the mouth, where conditions can vary significantly. The arrangement of cells in pairs and chains may also facilitate cell-to-cell communication or the formation of biofilms, potentially influencing its ecological role in oral health and disease.↵↵Understanding the specific traits of S. oralis subsp. oralis strain RH_57980_07 enhances our knowledge of its functional capacity within the oral microbiome, where it may play a role in maintaining ecological balance or contributing to the health status of the host. Further investigation into its interactions and functions could provide insights into the complex dynamics of microbial communities in the oral environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUK00000000.1 Bac0014996 Streptococcus oralis subsp. oralis strain OD_321121_09 "Streptococcus oralis subsp. oralis strain OD_321121_09 is a Gram-positive, facultative anaerobic coccus that typically arranges itself in pairs or chains. This strain is part of a broader group of Streptococcus species known for their association with host organisms, suggesting a potential role in the microbiota of mammals. The arrangement of these cocci in chains or pairs may facilitate their ability to colonize host environments, where they might contribute to complex microbial communities.↵↵As a facultative anaerobe, S. oralis subsp. oralis strain OD_321121_09 can thrive in both aerobic and anaerobic conditions, allowing it to adapt to various niches within a host. This adaptability may enhance its survival and proliferation in different microenvironments, such as the oral cavity, where oxygen levels can vary significantly.↵↵Furthermore, the host-associated habitat of this strain implies a potential involvement in symbiotic relationships with its host. While specific ecological interactions are not detailed, the presence of such microorganisms in the oral microbiome is often linked to maintaining oral health and influencing the host's immune responses. The unique flexibility in metabolic requirements, combined with its characteristic morphology and arrangement, positions S. oralis subsp. oralis strain OD_321121_09 as an integral component of the microbial landscape within host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUQ00000000.1 Bac0014997 Streptococcus oralis subsp. oralis strain OD_311844-09 "Streptococcus oralis subsp. oralis strain OD_311844-09 is a Gram-positive coccus that typically exhibits a cellular arrangement in pairs and chains. This strain is classified as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments, which may facilitate its presence in diverse host-associated habitats. ↵↵As a member of the Streptococcus genus, this strain is expected to inhabit mucosal surfaces, particularly in the oral cavity, where it likely plays a role in the complex microbial community associated with human hosts. The ability to form chains and pairs suggests a communal lifestyle that may enhance its survival and metabolic versatility in fluctuating environmental conditions.↵↵The facultative anaerobic nature of Streptococcus oralis subsp. oralis strain OD_311844-09 allows it to adapt to varying oxygen levels, which is a crucial trait for colonization in the dynamic environment of the oral cavity, where oxygen availability can differ significantly. This adaptability may confer advantages in competing with other microbial species for resources and niches within the host.↵↵Overall, the traits of this strain indicate its potential significance in the oral microbiome, contributing to both microbial diversity and the ecological balance within host-associated environments, highlighting the intricate relationships between oral microbes and their human hosts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUR00000000.1 Bac0014998 Streptococcus oralis subsp. oralis strain RH_5486_10 "Streptococcus oralis subsp. oralis strain RH_5486_10 is a Gram-positive, cocci-shaped bacterium that typically arranges itself in pairs or chains. This strain is classified as a facultative anaerobe, indicating that it can thrive in both aerobic and anaerobic environments, which may provide it with a competitive advantage in varied host-associated habitats. ↵↵As a member of the Streptococcus genus, this strain is likely to inhabit mucosal surfaces, particularly within the oral cavity, where it may play a role in the complex microbiota. The facultative anaerobic nature of S. oralis subsp. oralis strain RH_5486_10 allows it to adapt to fluctuating oxygen levels, which is common in the oral environment where oxygen availability can vary due to the presence of other microbial species and metabolic activities.↵↵This strain's association with host organisms suggests potential interactions with the host immune system and other microbial communities, which may influence its survival and ecological role. Given its capacity to form chains and pairs, this bacterium may contribute to biofilm formation on dental surfaces, potentially impacting oral health. Further research into its specific interactions and functions in the microbial ecosystem could enhance our understanding of its role in maintaining oral homeostasis or contributing to dysbiosis." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUU00000000.1 Bac0014999 Streptococcus oralis subsp. dentisani strain RH_55407_11 "Streptococcus oralis subsp. dentisani strain RH_55407_11 is a Gram-positive coccus that typically forms pairs and chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is characteristic of many oral bacteria. ↵↵As a host-associated microbe, S. oralis subsp. dentisani strain RH_55407_11 is likely to inhabit the oral cavity, where it may play a role in the complex microbial ecosystem of the human mouth. The presence of this strain suggests a potential contribution to dental health, given that many Streptococcus species are involved in community dynamics that can influence oral microbiota composition.↵↵The adaptability to varying oxygen levels may provide S. oralis subsp. dentisani strain RH_55407_11 with a competitive advantage in the diverse environments found within the oral cavity, where oxygen availability can fluctuate. This resilience may also facilitate interactions with other commensal microorganisms, potentially influencing the overall health and stability of the oral microbiome. Thus, understanding the traits of this strain could offer insights into its role in maintaining oral health and the implications of its interactions within the microbial community." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCUZ00000000.1 Bac0015000 Streptococcus oralis subsp. dentisani strain RH_13585_10 "Streptococcus oralis subsp. dentisani strain RH_13585_10 is a Gram-positive cocci bacterium that typically forms pairs and chains. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is characteristic of many members of the Streptococcus genus. ↵↵As a host-associated microbe, S. oralis subsp. dentisani strain RH_13585_10 is likely to inhabit various niches within the host, potentially including the oral cavity where it may play a role in the complex microbial community associated with dental health. The ability to exist in both oxygen-rich and low-oxygen environments suggests adaptability, which could be advantageous for colonization and persistence in the dynamic conditions of the oral microbiome. ↵↵Further investigations into the ecological role of this strain could provide insight into its interactions within the host-associated microbiota, particularly its potential contributions to oral health and disease prevention. The strain's arrangement in pairs and chains may also influence its biofilm formation capabilities, an important factor in microbial ecology and host interactions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NCVA00000000.1 Bac0015001 Streptococcus mitis strain RH_50275_09 s_mitis_RH_50275_09_ID_1 "Streptococcus mitis strain RH_50275_09 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. This strain is nonsporulating, indicating that it does not form spores as part of its life cycle, which is a common feature among many members of the Streptococcus genus. As a facultative anaerobe, S. mitis strain RH_50275_09 can grow in both the presence and absence of oxygen, suggesting a metabolic versatility that allows it to thrive in various environments, particularly in host-associated habitats.↵↵The ecological niche of S. mitis strain RH_50275_09 as a host-associated microorganism suggests its potential role in the human microbiome, particularly within the oral cavity or respiratory tract, where similar strains are often found. Understanding the specific interactions and contributions of this strain within its host environment may provide insights into its potential symbiotic relationships or its role in maintaining microbial balance. Further research into its physiological properties and interactions may illuminate its significance in health and disease states, especially in relation to other members of the oral microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 NCVF00000000.1 Bac0015002 Streptococcus mitis strain OD_317805_11 s_mitis_OD_317805_11_ID_1 "Streptococcus mitis strain OD_317805_11 (s_mitis_OD_317805_11_ID_1) is a Gram-positive coccus that typically exhibits a chain and pair arrangement. This strain is nonsporulating and classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Its habitat is firmly established as host-associated, suggesting a close relationship with host organisms, which may include humans and other mammals.↵↵As a member of the Streptococcus genus, S. mitis is generally known for its role in the normal microbiota of the oral cavity and upper respiratory tract. The facultative anaerobic nature of this strain allows it to adapt to varying oxygen levels within these environments, contributing to its survival and persistence in host-associated niches. ↵↵The nonsporulating characteristic of S. mitis strain OD_317805_11 implies a reliance on consistent environmental conditions for growth and reproduction, contrasting with spore-forming bacteria that can endure extreme conditions. This trait offers insights into the ecological dynamics of S. mitis, suggesting it may be more susceptible to fluctuations in its host environment than sporulating microbes.↵↵In summary, the ecological significance of S. mitis strain OD_317805_11 lies in its adaptation to host-associated environments, where it contributes to the complex interplay of microbial communities within the host's microbiome. Understanding its traits can provide valuable information on its ecological role and interactions with host systems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 NCVK00000000.1 Bac0015003 Staphylococcus pasteuri strain KR "Staphylococcus pasteuri strain KR is a coccus-shaped bacterium belonging to the Staphylococcus genus. This strain exhibits typical characteristics of staphylococci, including its spherical morphology, which often leads to the formation of clusters resembling grape-like arrangements. While specific metabolic pathways and growth conditions for strain KR have not been detailed, members of the Staphylococcus genus are generally known for their ability to thrive in a variety of environments, including those with high salt concentrations, which may suggest a level of osmotolerance.↵↵Although the full spectrum of biochemical activities and phenotypic traits of Staphylococcus pasteuri strain KR is not specified, it is reasonable to infer that, like other staphylococci, it may exhibit catalase positivity, which distinguishes them from streptococci. This trait allows for the breakdown of hydrogen peroxide, a common reactive oxygen species encountered in various environments, including host organisms.↵↵The presence of Staphylococcus pasteuri in various habitats suggests potential roles in microbial communities, particularly in association with skin and mucosal surfaces of mammals, where it may contribute to the complex interactions within the microbiome. Its resilience and adaptability may provide insights into microbial survival strategies in diverse ecological niches, underscoring the importance of staphylococci in both environmental and host-associated microbiota. Further investigation into strain KR could reveal more about its ecological contributions and potential applications in biotechnological contexts." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pasteuri Cocci 45972 NCXJ00000000.1 Bac0015004 Acetobacter fabarum strain KR "Acetobacter fabarum strain KR is a Gram-negative, rod-shaped bacterium belonging to the Acetobacter genus. Characteristically, members of this genus are known for their ability to oxidize ethanol to acetic acid, which plays a significant role in various fermentation processes. The Gram-negative nature of A. fabarum strain KR indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, typical of many bacteria within this classification. ↵↵The rod shape of A. fabarum strain KR suggests a potential for motility and colonization in liquid environments, which may facilitate its ecological role in the fermentation of alcoholic substrates. While specific metabolic pathways for this strain have not been detailed here, the genus Acetobacter is generally recognized for its distinctive role in vinegar production and the conversion of ethanol in various substrates, including fruit juices and wines.↵↵In terms of ecological insight, A. fabarum strain KR may contribute to the microbial diversity within fermentation systems, potentially enhancing the flavor profiles of fermented products through its metabolic byproducts. This highlights the importance of such bacteria not only in industrial applications but also in natural ecosystems where fermentation processes are critical. The presence of A. fabarum strain KR in these environments may influence the microbial community dynamics and the overall quality of fermented goods." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter fabarum Gram-negative rod 483199 NCXK00000000.1 Bac0015005 Mycobacterium paraintracellulare strain KCTC 29084 "Mycobacterium paraintracellulare strain KCTC 29084 is a rod-shaped, non-spore-forming bacterium that exhibits optimal growth at a temperature of 37.0 °C. This strain, categorized within the genus Mycobacterium, is part of a diverse group of bacteria known for their unique cell wall structure, which includes mycolic acids, contributing to their environmental resilience and resistance to chemical agents. ↵↵The temperature preference of 37.0 °C suggests that M. paraintracellulare strain KCTC 29084 is adapted to a mesophilic lifestyle, potentially thriving in conditions that mimic those found in warm-blooded hosts. This characteristic is indicative of its possible ecological role in environments where such temperatures are prevalent, although specific ecological associations have not been defined in the current data.↵↵Moreover, the absence of sporulation indicates that this strain relies on other survival mechanisms to endure unfavorable conditions, which may include metabolic adaptations that allow it to persist in its habitat. Understanding the growth conditions and survival strategies of M. paraintracellulare could provide insights into its ecological niche and interactions within microbial communities. The study of this strain may also enhance our knowledge of the adaptive capabilities of mycobacteria in response to environmental stressors." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paraintracellulare rod 37 mesophilic non-spore-forming 1138383 NCXN00000000.1 Bac0015006 Mycolicibacillus koreensis strain KCTC 19819 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacillus Mycolicibacillus koreensis 1069220 NCXO00000000.1 Bac0015007 Mycobacterium decipiens strain TBL 1200985 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium decipiens 1430326 NCXP00000000.1 Bac0015008 Acinetobacter baumannii strain ABUH557 "Acinetobacter baumannii strain ABUH557 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to warm-blooded hosts. As a chemoheterotroph, A. baumannii strain ABUH557 derives its energy from organic compounds, indicating a versatile metabolic capability that allows it to inhabit a variety of environments. ↵↵The organism is strictly aerobic, necessitating the presence of oxygen for its survival and growth. The capability of A. baumannii to occupy multiple habitats suggests a broad ecological niche, potentially encompassing both clinical and environmental settings. Its ability to adapt to diverse conditions may contribute to its resilience and persistence in various environments.↵↵Understanding the metabolic and environmental adaptability of A. baumannii strain ABUH557 provides insights into the potential interactions this bacterium may have within its ecological niches. Given its heterotrophic lifestyle and aerobic requirements, this strain may play a role in nutrient cycling, particularly in environments rich in organic matter, thereby influencing local microbial communities and ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NCYH00000000.1 Bac0015009 Pluralibacter gergoviae strain 40874 "Pluralibacter gergoviae strain 40874 is a Gram-negative, rod-shaped bacterium. As a member of the genus Pluralibacter, this strain exhibits the characteristic morphological features associated with Gram-negative bacteria, including a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides. The rod shape is typical of many bacteria, suggesting a potential for motility and adaptation to various environments. ↵↵While specific metabolic capabilities and growth conditions for strain 40874 are not detailed, Gram-negative rods often demonstrate versatile metabolic pathways that enable them to thrive in diverse ecological niches. This versatility may allow P. gergoviae strain 40874 to interact with various biotic and abiotic components of its environment, potentially contributing to nutrient cycling or other ecological processes. ↵↵Further research into this strain could elucidate its role in microbial communities or biotechnological applications, particularly in environments where Gram-negative bacteria are prevalent. Understanding the specific ecological niches occupied by P. gergoviae strain 40874 could provide insights into its functional interactions within microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter Pluralibacter gergoviae negative Rod 61647 NDFB00000000.1 Bac0015010 Bacillus sp. OG2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. OG2 1979526 NDFN00000000.1 Bac0015011 Vibrio sp. V15_P4S5T153 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. V15_P4S5T153 1938669 NDIJ00000000.1 Bac0015012 Haemophilus influenzae strain 39P18H1 N39P18H1_9_1 "Haemophilus influenzae strain 39P18H1 N39P18H1_9_1 is a Gram-negative rod-shaped bacterium that exhibits both aerobic and facultative anaerobic respiration. Its optimal growth temperature is approximately 35.0°C, indicating a preference for warm environments typically associated with host organisms. This microbe is classified as host-associated, suggesting that it resides in or on a host organism, which may influence its metabolic activities and ecological interactions.↵↵The rod shape of H. influenzae strain 39P18H1 N39P18H1_9_1 is characteristic of the genus Haemophilus, which is known for its diverse roles in various biological contexts, including symbiotic relationships and potential disease associations. The ability to thrive in both aerobic and facultative anaerobic conditions enables this strain to adapt to fluctuating oxygen levels within its host environment, potentially enhancing its survival and persistence.↵↵Understanding the specific adaptations of Haemophilus influenzae strain 39P18H1 N39P18H1_9_1 to its host-associated habitat may provide insights into its ecological niche and the dynamics of microbial populations in similar environments. Such knowledge could inform further research on the interactions between this bacterium and its host, as well as its roles in the broader microbial community." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 727 NDWW00000000.1 Bac0015013 Finegoldia magna strain CCUG 54800 69c "Finegoldia magna strain CCUG 54800 69c is a Gram-positive, anaerobic coccus that demonstrates versatility in its habitat, being found in multiple environments. This microbe exhibits a characteristic coccal shape, which is typical of many members within the genus Finegoldia. Its anaerobic nature indicates that it thrives in environments devoid of oxygen, suggesting a potential role in anaerobic ecosystems or associations with other microbial communities.↵↵The ability of Finegoldia magna to inhabit diverse habitats may be indicative of its metabolic adaptability and resilience. While the specific ecological roles of this strain remain to be fully elucidated, its presence in various environments could point towards involvement in complex microbial interactions or contributions to nutrient cycling within anaerobic niches. This characteristic adaptability underscores the potential significance of F. magna in understanding microbial dynamics in anaerobic conditions, which are crucial for various biogeochemical processes. Further studies could provide deeper insights into its functional roles and interactions within these ecosystems." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 1260 NDYC00000000.1 Bac0015014 Finegoldia magna strain 12T306 41c "Finegoldia magna strain 12T306 41c is a Gram-positive coccus that thrives in anaerobic environments, showcasing its adaptability to various habitats. This strain is part of a genus that is commonly associated with human microbiota, although its specific ecological roles in diverse environments remain to be fully elucidated. ↵↵Finegoldia magna exhibits a characteristic spherical shape, which is typical of many cocci. The anaerobic nature of this strain indicates its reliance on fermentation or anaerobic respiration for energy production, allowing it to flourish in oxygen-limited niches, such as the gastrointestinal tract or other anoxic environments. The ability of Finegoldia magna to inhabit multiple habitats suggests a level of ecological versatility, although the specific conditions that favor its growth are not detailed in the current data.↵↵Research into the metabolic pathways and interactions of Finegoldia magna strain 12T306 41c, particularly in relation to its anaerobic lifestyle, could provide insights into its potential roles in microbial communities and its contributions to the overall health of its habitats. Understanding these dynamics may clarify its significance within both human-associated microbiomes and broader environmental contexts, highlighting the intricate relationships that exist among anaerobic microorganisms." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 1260 NDYD00000000.1 Bac0015015 Finegoldia magna strain 12T272 21c "Finegoldia magna strain 12T272 21c is a Gram-positive, anaerobic coccus that thrives in diverse habitats. This strain is characterized by its spherical shape, which is typical of cocci, and its ability to grow in environments devoid of oxygen. The anaerobic nature of F. magna indicates its metabolic processes are adapted to conditions where oxygen is limited, allowing it to occupy niches that may be inhospitable to aerobic microorganisms.↵↵The adaptability of Finegoldia magna to multiple habitats suggests its potential role in various ecological contexts, including human-associated microbiota. While specific details about its pathogenicity or precise ecological interactions are not provided, the presence of this microbe in diverse environments may indicate its involvement in complex microbial communities. Its anaerobic lifestyle further implies that it could play a significant role in anaerobic fermentation processes or in the breakdown of organic material, contributing to nutrient cycling in its respective ecosystems.↵↵Overall, the ecological versatility of Finegoldia magna strain 12T272 21c underscores its potential importance in anaerobic microbiomes, which remain critical to understanding the dynamics of microbial life in both natural and human-influenced environments." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 1260 NDYF00000000.1 Bac0015016 Finegoldia magna strain 09T494 21c "Finegoldia magna strain 09T494 21c is a Gram-positive cocci bacterium identified as an anaerobe, thriving in various habitats. This strain belongs to a genus that is typically associated with anaerobic environments, which influences its metabolic processes and ecological interactions. ↵↵The cocci morphology of Finegoldia magna suggests a potential for forming clusters or chains, a characteristic often observed in Gram-positive bacteria. Its anaerobic nature indicates that it relies on fermentation or other anaerobic metabolic pathways for energy production, avoiding the need for oxygen, which can be detrimental to its survival. This trait may allow it to occupy niches that are less accessible to aerobic organisms, such as deep tissue, certain gastrointestinal environments, or sediment layers where oxygen penetration is minimal.↵↵Finegoldia magna strain 09T494 21c's ability to inhabit multiple environments highlights its ecological versatility, which could play a role in the microbial community dynamics in its habitats. Understanding its specific interactions within these communities could provide insights into the roles of anaerobic bacteria in nutrient cycling and their contributions to ecosystem functions. Further research into this strain could elucidate its precise ecological role and potential applications in microbiology." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 1260 NDYG00000000.1 Bac0015017 Parageobacillus galactosidasius strain DSM 18751 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus galactosidasius 883812 NDYL00000000.1 Bac0015018 Campylobacter concisus strain CCUG 19995 "Campylobacter concisus strain CCUG 19995 is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or occur as singles. This microbe is classified as microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which is consistent with its habitat being host-associated. ↵↵The morphology of C. concisus strain CCUG 19995, particularly its spirilla shape, may facilitate its motility and colonization in the gastrointestinal tracts of hosts, where it is commonly found. The microaerophilic nature of this organism suggests a potential adaptation to the specific oxygen conditions present in the gut environment, allowing it to exploit ecological niches that are inhospitable to obligate aerobes. ↵↵Further research on this strain could provide insights into its role within the complex microbial communities of the host, potentially influencing host health and metabolism. Understanding its interaction with other microbial species in the gut may reveal significant ecological dynamics, which could have implications for both microbiota research and clinical studies related to gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 NDYN00000000.1 Bac0015019 Campylobacter concisus strain Lasto64.99 "Campylobacter concisus strain Lasto64.99 is a Gram-negative microbe characterized by its spirilla shape and distinctive cell arrangement, which can be observed in both chains and singles. This strain is classified as microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which is typical for many Campylobacter species. ↵↵As a host-associated organism, C. concisus strain Lasto64.99 is believed to inhabit specific niches within its host, potentially indicating a symbiotic or commensal relationship. While precise ecological roles or pathogenic potential are not delineated in the current data, the microaerophilic nature and host association suggest that this strain may play a role in the microbial dynamics of its environment, contributing to the overall microbial community structure. ↵↵The unique combination of these traits positions C. concisus strain Lasto64.99 as an organism of interest in studies focused on host-microbe interactions, particularly in understanding how microaerophilic bacteria adapt to living within host-associated environments. Further research may illuminate its potential contributions to host health or dysbiosis, particularly in gastrointestinal contexts where Campylobacter species are often studied." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 NDYP00000000.1 Bac0015020 Campylobacter concisus strain Lasto127.99 "Campylobacter concisus strain Lasto127.99 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to arrange in chains or as singles. This strain is known to inhabit host-associated environments, which suggests a close relationship with its host organisms and potential adaptations to specific ecological niches within those environments. The microaerophilic nature of C. concisus strain Lasto127.99 indicates that it thrives in conditions with reduced oxygen levels, which is typical for many Campylobacter species that are often found in the gastrointestinal tracts of animals and humans.↵↵The morphological feature of being spirilla may facilitate motility and colonization in the viscous environments encountered within host organisms. Understanding the ecological role of Campylobacter concisus strain Lasto127.99 could provide insights into its interactions within host microbiomes, particularly regarding its potential contributions to the overall microbial community dynamics. Further studies may reveal the specific conditions under which this strain operates optimally and its interactions with other microbial species, which could enhance our understanding of host-associated microbial ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 NDYQ00000000.1 Bac0015021 Campylobacter concisus strain Lasto205.94 "Campylobacter concisus strain Lasto205.94 is a Gram-negative bacterium characterized by its spirilla shape and unique cellular arrangement, occurring both in chains and as singles. This strain is classified as microaerophilic, indicating that it requires a reduced level of oxygen for optimal growth, which is typical of many Campylobacter species. ↵↵C. concisus is known to inhabit host-associated environments, suggesting a close association with animal or human hosts, although the specific ecological niche of strain Lasto205.94 has not been detailed in the provided traits. The microaerophilic nature of this strain may allow it to thrive in the intestinal tracts of mammals where oxygen levels are typically low, thus potentially contributing to its survival in host-associated habitats. ↵↵Understanding the environmental conditions that C. concisus strain Lasto205.94 can tolerate may provide insights into its ecological role within the gastrointestinal microbiome. Its adaptation to microaerophilic conditions might influence the dynamics of microbial communities in the host, potentially affecting nutrient cycling and interactions with other microbiota. Further investigation into this strain could elucidate its specific interactions and contributions to host health and disease states in the context of microbial ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 NDYR00000000.1 Bac0015022 Enterobacter mori strain ECC1766 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter mori 539813 NEEF00000000.1 Bac0015023 Enterobacter kobei strain ECC1097 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter kobei 208224 NEEU00000000.1 Bac0015024 Wohlfahrtiimonas chitiniclastica strain G9145 16 Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Ignatzschineriaceae Wohlfahrtiimonas Wohlfahrtiimonas chitiniclastica 400946 NEFC00000000.1 Bac0015025 Marinobacter vinifirmus strain FB1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter vinifirmus 355591 NEFY00000000.1 Bac0015026 Acinetobacter sp. ANC 3903 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 3903 1977883 NEGA00000000.1 Bac0015027 Acinetobacter sp. ANC 4470 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4470 1977881 NEGC00000000.1 Bac0015028 Acinetobacter sp. ANC 4218 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4218 1977880 NEGD00000000.1 Bac0015029 Acinetobacter terrae strain ANC 4655 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter terrae 2731247 NEGF00000000.1 Bac0015030 Acinetobacter sp. ANC 3832 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 3832 1977874 NEGJ00000000.1 Bac0015031 Acinetobacter sp. ANC 3813 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 3813 1977873 NEGK00000000.1 Bac0015032 Acinetobacter sp. ANC 4654 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4654 1977872 NEGL00000000.1 Bac0015033 Acinetobacter sp. ANC 4973 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4973 1977871 NEGM00000000.1 Bac0015034 Citrobacter sp. L55 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. L55 1981983 NELM00000000.1 Bac0015035 Bacillus sp. KbaL1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. KbaL1 1978340 NELW00000000.1 Bac0015036 Acetivibrio saccincola strain A7 Bacillati Bacillota Clostridia Acetivibrionales Acetivibrionaceae Acetivibrio Acetivibrio saccincola 1677857 NEMB00000000.1 Bac0015037 Escherichia coli strain OLC1000 "Escherichia coli strain OLC1000 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singly. This strain thrives optimally at 37.0°C, which is consistent with the body temperature of many warm-blooded hosts. E. coli OLC1000 is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments, which allows it to adapt to the varying oxygen levels encountered in host-associated habitats.↵↵The host-associated nature of E. coli OLC1000 suggests a potential specialization in its interactions with host organisms, likely influencing its metabolic pathways and growth characteristics. The ability to thrive in pairs or singles may facilitate its colonization and persistence in different microenvironments within the host. The strain's optimal growth temperature aligns with the physiological conditions of its hosts, which may enhance its fitness and survival in these environments.↵↵Given these traits, E. coli strain OLC1000 may play a significant role in the microbial community dynamics within its host, potentially engaging in mutualistic relationships or contributing to the microbial diversity essential for host health. Understanding these interactions in the context of its ecological niche could provide insights into the broader implications of E. coli strains in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NEME00000000.1 Bac0015038 Bacillus sp. MB353a Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MB353a 1982041 NEOT00000000.1 Bac0015039 Stenotrophomonas maltophilia strain EA23 "Stenotrophomonas maltophilia strain EA23 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This strain is characterized by its ability to thrive in multiple habitats, suggesting a versatile ecological niche and the potential for environmental resilience. ↵↵As an aerobic organism, S. maltophilia strain EA23 relies on oxygen for its growth and energy production, which may influence its distribution and interactions within various ecosystems. The presence of this strain in diverse environments highlights its adaptability and potential role in biogeochemical cycles. ↵↵Moreover, the Gram-negative nature of S. maltophilia indicates a specific structural composition of its cell wall, featuring an outer membrane that may confer advantages in terms of antibiotic resistance and survival in competitive microbial communities. This trait could contribute to its persistence in various habitats, including soil and water, where it may interact with other microorganisms and influence community dynamics.↵↵In summary, Stenotrophomonas maltophilia strain EA23 exemplifies a robust aerobe capable of inhabiting diverse environments, underscoring the ecological significance of its adaptability and potential contributions to microbial interactions in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 NEQT00000000.1 Bac0015040 Limnohabitans sp. WS1 LimC-WS1-C48 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. WS1 1100726 NERU00000000.1 Bac0015041 Limnohabitans sp. T6-5 LimC-T6-5-C7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. T6-5 1100724 NERV00000000.1 Bac0015042 Limnohabitans sp. T6-20 LimC-T6-20-C3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. T6-20 1100725 NERW00000000.1 Bac0015043 Limnohabitans sp. MMS-10A-192 LimC-MMS-10A-192-C23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. MMS-10A-192 1835769 NERX00000000.1 Bac0015044 Limnohabitans sp. JirII-31 LimA-JirII-31-C44 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. JirII-31 1977908 NESA00000000.1 Bac0015045 Limnohabitans sp. Jir61 LimA-Jir61-C8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. Jir61 1826168 NESD00000000.1 Bac0015046 Limnohabitans sp. Hippo4 LimB-Hippo4-C18 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. Hippo4 1826167 NESE00000000.1 Bac0015047 Limnohabitans sp. Hippo3 LimC-Hippo3-C31 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. Hippo3 1597956 NESF00000000.1 Bac0015048 Limnohabitans sp. G3-2 LimC-G3-2-C25 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. G3-2 1100711 NESG00000000.1 Bac0015049 Limnohabitans sp. B9-3 LimA-B9-3-C23 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. B9-3 1100707 NESI00000000.1 Bac0015050 Limnohabitans sp. 2KL-17 LimC-2KL-17-C111 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. 2KL-17 1100704 NESK00000000.1 Bac0015051 Streptomyces sp. CS113 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS113 1982761 NEVC00000000.1 Bac0015052 Streptomyces sp. CS227 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS227 1982763 NEVE00000000.1 Bac0015053 Bordetella genomosp. 9 strain AU21707 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 9 1416803 NEVJ00000000.1 Bac0015054 Bordetella genomosp. 4 strain AU9919 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 4 463044 NEVQ00000000.1 Bac0015055 Bordetella genomosp. 2 strain AU8256 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 2 1983456 NEVT00000000.1 Bac0015056 Bifidobacterium vansinderenii strain Tam10B "Bifidobacterium vansinderenii strain Tam10B is a Gram-positive, non-spore-forming bacterium classified within the Bifidobacterium genus, exhibiting facultative aerobe/anaerobe capabilities. This strain is characterized by its ability to thrive in varying oxygen conditions, allowing it to adapt to different environments, which may include the human gastrointestinal tract and various fermented foods. ↵↵As a member of the Bifidobacterium group, strain Tam10B is likely involved in carbohydrate fermentation, contributing to the overall microbial ecosystem and potentially influencing gut health. Its Gram-positive nature indicates a thick peptidoglycan layer, which may confer resistance to certain environmental stresses compared to Gram-negative bacteria. The facultative anaerobic lifestyle suggests that this strain can utilize oxygen when available but can also switch to fermentation processes in anaerobic environments, enhancing its survival in diverse habitats.↵↵The adaptability of Bifidobacterium vansinderenii strain Tam10B to both aerobic and anaerobic conditions may facilitate its role in the microbiome, where fluctuating oxygen levels are common. This trait could provide insights into its potential utility in probiotic applications, as it may help restore or maintain gut microbial balance under varying physiological conditions. Understanding the specific metabolic pathways employed by this strain could further elucidate its functional contributions to both human health and food fermentation processes." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium vansinderenii Gram-positive non-motile facultative aerobe/anaerobe non-spore-forming 1984871 NEWD00000000.1 Bac0015057 Halorubrum sp. SD683 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. SD683 1855873 NEWJ00000000.1 Bac0015058 Nitrospira sp. CG24E Nitrospira_sp_RSF136_CG24_E_99 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CG24E 1985129 NEWP00000000.2 Bac0015059 Nitrospira sp. CG24A Nitrospira_sp_RSF2_CG24_A_40 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CG24A 1985133 NEWT00000000.2 Bac0015060 Candidatus Marsarchaeota G1 archaeon OSP_C Thermoproteati Thermoproteota Candidatus Marsarchaeota G1 archaeon OSP_C 1978154 NEXB00000000.1 Bac0015061 Candidatus Marsarchaeota G2 archaeon OSP_D Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon OSP_D 1978157 NEXE00000000.1 Bac0015062 Candidatus Marsarchaeota G2 archaeon ECH_B_3 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_3 1978161 NEXI00000000.1 Bac0015063 Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-M15 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-M15 1978162 NEXJ00000000.1 Bac0015064 Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-F08 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-F08 1978165 NEXM00000000.1 Bac0015065 Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-G06 Thermoproteati Thermoproteota Candidatus Marsarchaeota G2 archaeon ECH_B_SAG-G06 1978166 NEXN00000000.1 Bac0015066 Psychroflexus sp. S27 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Psychroflexus Psychroflexus sp. S27 1982757 NEXQ00000000.1 Bac0015067 Advenella sp. S44 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Advenella Advenella sp. S44 1982755 NEXS00000000.1 Bac0015068 Acinetobacter populi strain PBJ7 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter populi 1582270 NEXX00000000.1 Bac0015069 Serratia nematodiphila strain CRK0003 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia nematodiphila 458197 NEYQ00000000.2 Bac0015070 Citrobacter werkmanii strain CRK0001 "Citrobacter werkmanii strain CRK0001 is a Gram-negative, nonsporulating rod-shaped bacterium that derives its energy through chemoheterotrophic metabolism. This metabolic strategy indicates that the strain can utilize organic compounds as both carbon and energy sources, positioning it within a diverse group of bacteria capable of thriving in various environments where organic matter is present.↵↵The rod shape of Citrobacter werkmanii CRK0001 is characteristic of many members of the Enterobacteriaceae family, to which it belongs. As a nonsporulating organism, this strain lacks the ability to form spores, which suggests that it may be less resilient to extreme environmental stresses compared to sporulating bacteria. This trait may influence its ecological niches, likely favoring habitats where conditions are more stable and supportive of growth without the need for sporulation as a survival strategy.↵↵The metabolic versatility of Citrobacter werkmanii strain CRK0001 allows it to participate in nutrient cycling within its ecosystem, potentially playing a role in the degradation of complex organic materials. This ability is particularly relevant in environments rich in organic waste, where such bacteria can contribute to the breakdown of substrates, thereby influencing the overall microbial community dynamics. Further research may elucidate its interactions with other microorganisms and its specific contributions to nutrient cycling processes in its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter werkmanii Negative Rod Yes 1 Chemoheterotroph Mesophilic Nonsporulating 67827 NEYS00000000.2 Bac0015071 Bacillus thuringiensis serovar cameroun strain BGSC 4AF1 "Bacillus thuringiensis serovar cameroun strain BGSC 4AF1 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to survive in various environmental conditions. This strain is classified as a facultative anaerobe, indicating its versatility in utilizing both aerobic and anaerobic metabolic pathways, which can be advantageous in fluctuating oxygen environments. ↵↵B. thuringiensis strains, including serovar cameroun, are typically associated with host organisms, suggesting a potential relationship with specific hosts that may influence their ecological roles. The sporulating capability of this strain not only contributes to its resilience but also plays a critical role in its life cycle, enabling persistence in host-associated habitats where nutrient availability may be sporadic. ↵↵Understanding the ecological interactions of B. thuringiensis serovar cameroun strain BGSC 4AF1 within its host-associated habitats may provide insights into its potential applications in biocontrol, particularly in agricultural settings, where it could serve as a natural pest management agent. Further exploration of its specific interactions with host organisms could illuminate the dynamics of microbial communities and their impact on ecosystem health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFCI00000000.1 Bac0015072 Bacillus thuringiensis serovar malayensis strain BGSC 4AV1 "Bacillus thuringiensis serovar malayensis strain BGSC 4AV1 is a Gram-positive, rod-shaped bacterium that exhibits sporulation capabilities and demonstrates facultative anaerobic respiration. This strain is characterized by its association with host organisms, indicating a potential relationship with specific ecological niches where it may play a role in microbial interactions. ↵↵As a sporulating bacterium, B. thuringiensis serovar malayensis strain BGSC 4AV1 is capable of forming endospores, which allows it to survive in adverse environmental conditions and contributes to its resilience in various habitats. The facultative anaerobic nature of this strain suggests that it can thrive in both aerobic and anaerobic environments, providing it with versatility in nutrient acquisition and energy production.↵↵This unique combination of traits positions B. thuringiensis serovar malayensis strain BGSC 4AV1 as a potential candidate for further investigation into its ecological roles and interactions within host-associated environments, particularly in understanding its potential contributions to microbial communities and its adaptability to different oxygen conditions. This adaptability may have implications for its applications in biological control and biopesticide formulations, given the known utility of B. thuringiensis strains in agricultural practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFCR00000000.1 Bac0015073 Bacillus thuringiensis serovar londrina strain BGSC 4BF1 "Bacillus thuringiensis serovar londrina strain BGSC 4BF1 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and demonstrates facultative anaerobic metabolism. This strain is categorized as host-associated, indicating its adaptation to specific host environments, which may influence its ecological interactions and biological roles.↵↵As a member of the Bacillus genus, B. thuringiensis is renowned for its ability to produce insecticidal crystal proteins, though the specific traits related to its entomopathogenic potential have not been detailed in the current data. The facultative anaerobic nature of this strain allows it to thrive in varying oxygen conditions, which may enhance its survival and competitive capabilities in diverse environments, particularly those associated with its host.↵↵The sporulating characteristic of B. thuringiensis serovar londrina strain BGSC 4BF1 contributes to its resilience, enabling it to withstand adverse conditions and ensuring its persistence in host-associated habitats. This trait is particularly advantageous for maintaining its population during periods when environmental conditions may become less favorable.↵↵Overall, the combination of its Gram-positive cell structure, rod shape, and adaptive metabolic strategies suggests that B. thuringiensis serovar londrina strain BGSC 4BF1 plays a specific role in its ecological niche, potentially influencing host health and ecosystem dynamics through its interactions with both biotic and abiotic components of its habitat." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFDA00000000.1 Bac0015074 Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 "Bacillus thuringiensis serovar navarrensis strain BGSC 4BM1 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain is associated with host environments, suggesting a potential role in interactions with other organisms, possibly within insect hosts or in agricultural contexts. ↵↵As a sporulating bacterium, B. thuringiensis serovar navarrensis strain BGSC 4BM1 exhibits resilience under various environmental stresses, which may enhance its survival and persistence in host-associated habitats. The facultative anaerobic nature of this strain indicates its adaptability to varying oxygen levels, allowing it to thrive in both aerobic and anaerobic conditions, which could be advantageous for its survival in diverse ecological niches.↵↵The ecological implications of this strain may extend to its interactions with other microorganisms in its habitat, potentially influencing microbial community dynamics or contributing to nutrient cycling processes. Given its host-associated nature, further examination of B. thuringiensis serovar navarrensis strain BGSC 4BM1 could yield insights into its ecological roles, particularly in relation to agro-ecosystems and biological control applications. Understanding these traits can aid in elucidating its potential applications in sustainable agriculture and pest management strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFDG00000000.1 Bac0015075 Bacillus thuringiensis serovar kim strain BGSC 4BP1 "Bacillus thuringiensis serovar kim strain BGSC 4BP1 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as a facultative anaerobe. This strain is primarily found in host-associated environments, where it can thrive in the presence or absence of oxygen. The ability to sporulate allows B. thuringiensis serovar kim to form resilient spores, which are capable of withstanding unfavorable conditions and contributing to its survival in various habitats.↵↵The facultative anaerobic nature of this strain suggests that it can adapt to fluctuating oxygen levels, making it versatile in its ecological niche. This adaptability may facilitate its interaction with various host organisms, which could play a role in its ecological dynamics. While B. thuringiensis is well-known for its insecticidal properties, the specific ecological impact and interactions of strain BGSC 4BP1 within its host-associated habitat remain subjects for further investigation. Understanding these interactions may reveal insights into its potential applications in biocontrol and environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFDH00000000.1 Bac0015076 Bacillus thuringiensis serovar yosoo strain BGSC 4CA1 "Bacillus thuringiensis serovar yosoo strain BGSC 4CA1 is a Gram-positive, rod-shaped bacterium that is capable of sporulation and exhibits facultative anaerobic metabolism. This strain is host-associated, indicating a potential relationship with specific hosts, although the nature of this association is not detailed in the available data. ↵↵As a sporulating organism, Bacillus thuringiensis serovar yosoo strain BGSC 4CA1 can produce spores that facilitate survival in adverse environmental conditions, a trait that is characteristic of many Bacillus species. The facultative anaerobic nature of this strain suggests that it can thrive in both aerobic and anaerobic environments, which may enhance its adaptability to various ecological niches associated with its hosts.↵↵The ability to exist in different oxygen conditions while being associated with particular hosts implies that Bacillus thuringiensis serovar yosoo strain BGSC 4CA1 may play a role in the microbial ecology of its host environment, potentially contributing to nutrient cycling or influencing the microbiome composition. Further research is warranted to elucidate the specific interactions and ecological roles of this strain within its host-associated habitat." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFDN00000000.1 Bac0015077 Bacillus thuringiensis serovar subtoxicus strain BGSC 4I4 "Bacillus thuringiensis serovar subtoxicus strain BGSC 4I4 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, indicating a capacity for survival in adverse environmental conditions. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which enhances its adaptability to various host-associated habitats. ↵↵The sporulation process is an essential trait for Bacillus species, enabling them to endure unfavorable conditions and potentially contributing to their role in specific ecological niches. Given its host-associated habitat, strain BGSC 4I4 may interact closely with other microorganisms and host organisms, suggesting a potential role in complex microbial communities. Understanding the specific interactions and ecological roles of this strain could provide insights into its applications in biocontrol or as a biofertilizer, reflecting the broader significance of Bacillus thuringiensis in agricultural practices.↵↵Overall, the traits of Bacillus thuringiensis serovar subtoxicus strain BGSC 4I4 highlight its adaptive strategies for survival and interaction within host-associated environments, warranting further investigation into its ecological contributions and potential biotechnological applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFDT00000000.1 Bac0015078 Bacillus thuringiensis serovar darmstadiensis strain BGSC 4M3 "Bacillus thuringiensis serovar darmstadiensis strain BGSC 4M3 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive in host-associated environments. This strain exhibits facultative anaerobic metabolism, allowing it to grow in both the presence and absence of oxygen. The ability to form spores is a notable survival strategy, enabling the bacterium to endure unfavorable conditions and facilitate its dissemination in various ecological niches.↵↵Bacillus thuringiensis strains, including BGSC 4M3, are primarily recognized for their production of insecticidal proteins, which have significant implications in agricultural pest management. The host-associated habitat of this strain suggests potential interactions with various organisms, possibly indicating a role in the microbiome of its host or in biocontrol processes. Understanding such ecological relationships may provide insights into the bacterium's role in natural ecosystems and its potential applications in sustainable agriculture.↵↵Overall, the facultative anaerobic nature combined with sporulation capabilities positions Bacillus thuringiensis serovar darmstadiensis strain BGSC 4M3 as an adaptable microorganism within its habitat, highlighting the interplay between environmental conditions and microbial survival strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFEA00000000.1 Bac0015079 Bacillus thuringiensis serovar finitimus strain CTC "Bacillus thuringiensis serovar finitimus strain CTC is a Gram-positive, rod-shaped bacterium known for its facultative anaerobic metabolism and ability to sporulate. This strain is typically found in host-associated environments, indicating its adaptation to specific biological niches where it may interact with various hosts. Its facultative anaerobic nature allows it to thrive in both aerobic and anaerobic conditions, which may enhance its survival and proliferation in diverse ecological contexts.↵↵The ability to form spores is a significant trait that contributes to the resilience of B. thuringiensis serovar finitimus strain CTC, allowing it to withstand unfavorable environmental conditions. This characteristic is particularly advantageous in host-associated habitats, where fluctuating conditions may occur. While the specific ecological interactions of this strain remain to be fully elucidated, its association with hosts suggests potential roles in biological control or symbiotic relationships, potentially influencing local microbial communities.↵↵Overall, the unique combination of its Gram-positive, rod-shaped morphology and adaptive metabolic capabilities positions Bacillus thuringiensis serovar finitimus strain CTC as an interesting subject for further investigations into its ecological roles and potential applications in microbiology and agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFEL00000000.1 Bac0015080 Bacillus thuringiensis strain HD5 "Bacillus thuringiensis strain HD5 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, indicating a robust survival strategy under various environmental conditions. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which enhances its adaptability to diverse ecological niches. B. thuringiensis strains are primarily associated with hosts, suggesting that strain HD5 may interact with specific organisms in its habitat, potentially contributing to biocontrol or symbiotic relationships.↵↵The sporulation capability of this strain is particularly significant, as it enables the bacterium to form resilient spores that can withstand harsh conditions and facilitate its dispersal. This trait is critical for its survival and potential application in biological pest control, as the sporulated form can be introduced into various environments to target specific pests while minimizing ecological disruption.↵↵Given its facultative anaerobic nature and host-associated habitat, Bacillus thuringiensis strain HD5 may play a role in nutrient cycling and microbial interactions within its environment, highlighting its potential importance in maintaining ecological balance and promoting soil health. Future studies focusing on its interactions with host organisms and other microbial communities could provide further insights into its ecological roles and applications in sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFEM00000000.1 Bac0015081 Bacillus thuringiensis serovar thailandensis strain T68001 "Bacillus thuringiensis serovar thailandensis strain T68001 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as a facultative anaerobe. This strain is primarily associated with host organisms, suggesting a potential role in interactions with other biological systems. The ability to sporulate allows B. thuringiensis T68001 to survive in various environmental conditions, particularly in host-associated niches where nutrients may fluctuate.↵↵As a member of the Bacillus genus, this strain is characterized by its capacity to form endospores, which enhances its resilience and adaptability. The facultative anaerobic nature indicates that B. thuringiensis T68001 can thrive in both oxygen-rich and low-oxygen environments, further supporting its ecological versatility.↵↵The host association of this strain may imply a symbiotic or commensal relationship, which can be significant in understanding its ecological roles. For instance, B. thuringiensis strains are known for their entomopathogenic properties, yet the specific interactions of strain T68001 with its host remain to be elucidated. Understanding these dynamics could reveal insights into the evolutionary adaptations of this bacterium and its potential applications in biocontrol or biotechnology. The ecological implications of its facultative anaerobic lifestyle in host-associated habitats warrant further investigation to explore its full biological significance and potential interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NFEX00000000.1 Bac0015082 Flavonifractor sp. An91 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An91 1965665 NFHA00000000.1 Bac0015083 Alistipes onderdonkii strain An90 "Alistipes onderdonkii strain An90 is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This microbe is part of the Alistipes genus, which is known to inhabit the gastrointestinal tract of various hosts, suggesting a role in intestinal microbiota. The anaerobic nature of A. onderdonkii strain An90 indicates its adaptation to low-oxygen environments, where it may engage in fermentation or other anaerobic metabolic processes for energy production.↵↵The Gram-negative classification of this strain implies a complex cell wall structure, consisting of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature may influence its interaction with the host environment and its resilience to certain antimicrobial agents. ↵↵Given its anaerobic requirement, A. onderdonkii strain An90 may contribute to the maintenance of gut homeostasis, potentially influencing the microbial diversity and metabolic activities within the intestinal ecosystem. The ability to survive and proliferate in anaerobic conditions aligns with the functional roles often attributed to members of the Alistipes genus, including the fermentation of dietary fibers and the production of short-chain fatty acids, which can have beneficial effects on host health.↵↵In summary, Alistipes onderdonkii strain An90 exemplifies a microbial entity well-adapted to anaerobic environments, highlighting the intricate relationships between gut bacteria and host physiology, particularly in terms of nutrient metabolism and microbial community dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes onderdonkii Negative Anaerobe 328813 NFHB00000000.1 Bac0015084 Flavonifractor sp. An9 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An9 1965664 NFHC00000000.1 Bac0015085 Gemmiger sp. An87 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Gemmiger Gemmiger sp. An87 1965662 NFHD00000000.1 Bac0015086 Pseudoflavonifractor sp. An85 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor sp. An85 1965661 NFHE00000000.1 Bac0015087 Massilimicrobiota sp. An80 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massiliimicrobium Massilimicrobiota sp. An80 1965658 NFHI00000000.1 Bac0015088 Faecalibacterium sp. An77 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. An77 1965655 NFHK00000000.1 Bac0015089 Lachnoclostridium sp. An76 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. An76 1965654 NFHL00000000.1 Bac0015090 Bacteroides uniformis strain An67 "Bacteroides uniformis strain An67 is a Gram-negative anaerobic bacterium that primarily inhabits the gastrointestinal tract, specifically within the gut luminal niche of various hosts. This strain is part of the diverse microbiota that plays a crucial role in the digestion of complex carbohydrates and contributes to the overall health of the intestinal environment. As a member of the Bacteroidetes phylum, B. uniformis strain An67 is adapted to thrive in anaerobic conditions, which are characteristic of the gut milieu.↵↵The presence of B. uniformis in the intestinal tract suggests its involvement in various metabolic processes, including the fermentation of dietary fibers, which can lead to the production of short-chain fatty acids (SCFAs). These SCFAs are important for maintaining gut health and may have systemic effects on metabolism and inflammation. Furthermore, the ability of this strain to survive and proliferate in the gut under anaerobic conditions underscores its potential significance in the maintenance of gut homeostasis. ↵↵Research into Bacteroides uniformis strain An67 and other similar strains could provide insights into the complex interactions within the gut microbiome and their implications for host health, particularly in the context of dietary influences and gut-related diseases. Understanding the functional capacities of this strain may contribute to the development of probiotic therapies aimed at enhancing gut health and managing dysbiosis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 NFHS00000000.1 Bac0015091 Faecalibacterium sp. An58 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. An58 1965648 NFHX00000000.1 Bac0015092 Alistipes sp. An54 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. An54 1965645 NFIA00000000.1 Bac0015093 Pseudoflavonifractor sp. An44 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor sp. An44 1965635 NFIH00000000.1 Bac0015094 Parabacteroides johnsonii strain An42 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides johnsonii 387661 NFIJ00000000.1 Bac0015095 Flavonifractor sp. An306 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An306 1965629 NFIQ00000000.1 Bac0015096 Eubacterium sp. An3 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. An3 1965628 NFIR00000000.1 Bac0015097 Lachnoclostridium sp. An298 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. An298 1965627 NFIS00000000.1 Bac0015098 Muribaculum sp. An287 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculum Muribaculum sp. An287 1965623 NFIX00000000.1 Bac0015099 Bacteroides sp. An279 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. An279 1965620 NFJA00000000.1 Bac0015100 Parabacteroides sp. An277 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. An277 1965619 NFJB00000000.1 Bac0015101 Desulfovibrio sp. An276 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. An276 1965618 NFJC00000000.1 Bac0015102 Bacteroides sp. An269 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. An269 1965613 NFJG00000000.1 Bac0015103 Anaeromassilibacillus sp. An250 Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Anaeromassilibacillus Anaeromassilibacillus sp. An250 1965604 NFJK00000000.1 Bac0015104 Blautia sp. An249 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. An249 1965603 NFJL00000000.1 Bac0015105 Flavonifractor plautii strain An248 "Flavonifractor plautii strain An248 is a Gram-positive bacterium that resides in the human gut microbiota. As a facultative anaerobe, it possesses the metabolic versatility to thrive in varying oxygen conditions, enabling it to adapt to different niches within the gastrointestinal tract. This adaptability may play a significant role in its survival and functionality in the complex gut ecosystem. ↵↵The presence of Flavonifractor plautii in the human gut suggests it may contribute to the diverse metabolic processes occurring within this environment, including the fermentation of dietary fibers and other complex carbohydrates. The strain's ability to utilize a range of substrates could be instrumental in maintaining gut health and supporting the overall balance of the microbiota. ↵↵Emerging research on the human microbiome indicates that various bacterial strains, including Flavonifractor plautii, may influence host metabolism and immune responses. Therefore, understanding the precise functions and interactions of Flavonifractor plautii strain An248 within the gut microbiota may provide insights into its potential roles in human health, particularly in relation to diet and gut homeostasis." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii Positive Facultative anaerobe human gut microbiota 292800 NFJM00000000.1 Bac0015106 Cloacibacillus sp. An23 Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus Cloacibacillus sp. An23 1965591 NFJQ00000000.1 Bac0015107 Barnesiella sp. An22 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Barnesiella Barnesiella sp. An22 1965590 NFJR00000000.1 Bac0015108 Drancourtella sp. An210 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Drancourtella Drancourtella sp. An210 1965589 NFJS00000000.1 Bac0015109 Anaerofilum sp. An201 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerofilum Anaerofilum sp. An201 1965588 NFJT00000000.1 Bac0015110 Faecalibacterium sp. An192 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. An192 1965581 NFKB00000000.1 Bac0015111 Bacteroides sp. An19 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. An19 1965580 NFKD00000000.1 Bac0015112 Bacteroides clarus strain An189 "Bacteroides clarus strain An189 is a Gram-negative, anaerobic bacterium characterized by its inability to thrive in the presence of oxygen. As a member of the Bacteroides genus, this strain is likely to be involved in the complex microbial communities found in the gastrointestinal tract of various hosts. The Gram-negative nature of B. clarus strain An189 suggests that it possesses a distinctive outer membrane structure, which may play a role in its interactions with the host environment and other microbial species.↵↵The anaerobic requirement of this strain indicates that it metabolizes substrates in the absence of oxygen, utilizing fermentation or anaerobic respiration pathways. Such metabolic characteristics may contribute to its ecological niche, allowing it to flourish in anaerobic habitats, such as the intestines, where oxygen levels are considerably low. ↵↵Overall, Bacteroides clarus strain An189 exemplifies the adaptive strategies of anaerobic bacteria in maintaining a balanced microbiome, potentially influencing host health through fermentation processes that produce short-chain fatty acids. These metabolites are known to be beneficial for intestinal homeostasis and may provide insights into the roles of specific anaerobes in gut microbiota dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides clarus Negative Anaerobe 626929 NFKE00000000.1 Bac0015113 Pseudoflavonifractor sp. An187 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor sp. An187 1965578 NFKG00000000.1 Bac0015114 Pseudoflavonifractor sp. An184 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor sp. An184 1965576 NFKI00000000.1 Bac0015115 Faecalitalea cylindroides strain An178 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Faecalitalea Faecalitalea cylindroides feces 39483 NFKM00000000.1 Bac0015116 Pseudoflavonifractor sp. An176 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Pseudoflavonifractor Pseudoflavonifractor sp. An176 1965572 NFKO00000000.1 Bac0015117 Anaerotruncus colihominis strain An175 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus colihominis caeca; feces; rectal mucosa 169435 NFKP00000000.1 Bac0015118 Anaeromassilibacillus sp. An172 Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Anaeromassilibacillus Anaeromassilibacillus sp. An172 1965570 NFKS00000000.1 Bac0015119 Phocaeicola dorei strain An16 "Phocaeicola dorei strain An16 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C and exhibits anaerobic metabolic capabilities as a chemoheterotroph. This organism is notable for its adaptability to various habitats, which may include diverse environments where anaerobic conditions are prevalent. ↵↵As a member of the phylum Firmicutes, P. dorei strain An16 contributes to the microbial diversity found in anaerobic niches, likely playing a role in the breakdown of organic matter and the cycling of nutrients within these ecosystems. The bacterium's nonsporulating nature suggests an ecological strategy that relies on stable environments for survival and growth, rather than forming spores to withstand adverse conditions. ↵↵The ability to utilize a range of organic compounds as energy sources may also facilitate its survival in multiple habitats, potentially allowing for significant interactions with other microbial communities. Overall, P. dorei strain An16 exemplifies the functional versatility of anaerobic microbes in various ecological settings, emphasizing their importance in maintaining the balance of microbial processes in anaerobic environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 357276 NFKX00000000.1 Bac0015120 Lactobacillus gallinarum strain An153 "Lactobacillus gallinarum strain An153 is a Gram-positive, rod-shaped bacterium characterized by its lactic acid fermentation capabilities. This strain is part of the Lactobacillus genus, which is well-known for its role in various fermentation processes and its importance in food microbiology. The rod shape of Lactobacillus gallinarum An153 may contribute to its efficiency in colonization and fermentation activities, potentially influencing its interactions within its environment.↵↵As a member of the Lactobacillus genus, Lactobacillus gallinarum strain An153 is likely to produce lactic acid as a primary metabolic end product, which can have implications for food preservation and probiotic applications. The production of lactic acid by this strain might also play a role in inhibiting the growth of spoilage organisms and pathogens in various substrates, thereby contributing to the overall safety and quality of fermented products.↵↵Furthermore, the characteristics of Lactobacillus gallinarum strain An153 suggest it may be adapted to specific ecological niches, potentially including the gastrointestinal tracts of avian species, given its species designation. This adaptation could be significant for understanding the microbiota of birds and their role in nutrient fermentation. Overall, Lactobacillus gallinarum strain An153 presents a promising subject for further investigation into its functional roles in fermentation processes and its contributions to avian health and nutrition." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gallinarum Positive Rod 52242 NFKZ00000000.1 Bac0015121 Erysipelatoclostridium sp. An15 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Thomasclavelia Erysipelatoclostridium sp. An15 1965566 NFLA00000000.1 Bac0015122 Enterococcus cecorum strain An144 "Enterococcus cecorum strain An144 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. As a member of the Enterococcus genus, this strain exhibits the ability to thrive in both aerobic and anaerobic environments, allowing it to occupy diverse ecological niches. Its Gram-positive nature indicates a thick peptidoglycan layer in the cell wall, which is a common feature among many bacteria within this group.↵↵Facultative anaerobes like Enterococcus cecorum strain An144 can switch between aerobic respiration and fermentation, depending on the availability of oxygen. This metabolic flexibility may contribute to its resilience and adaptability in various environments, from the gastrointestinal tracts of animals to different substrates in laboratory settings.↵↵The presence of Enterococcus cecorum in various habitats suggests potential roles in nutrient cycling and interactions with other microorganisms. While specific ecological roles of strain An144 have not been detailed, the ability of Enterococcus species to engage in complex microbial communities implies that this strain may play a part in maintaining microbial balance or influencing the dynamics of its environment. Further studies could illuminate its specific interactions and contributions to microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus cecorum Positive Cocci Facultative anaerobe 44008 NFLC00000000.1 Bac0015123 Lachnoclostridium sp. An138 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. An138 1965560 NFLF00000000.1 Bac0015124 Flavonifractor sp. An135 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor sp. An135 1965558 NFLG00000000.1 Bac0015125 Faecalibacterium sp. An121 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium sp. An121 1965550 NFLM00000000.1 Bac0015126 Drancourtella sp. An12 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Drancourtella Drancourtella sp. An12 1965548 NFLO00000000.1 Bac0015127 Alistipes sp. An116 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. An116 1965546 NFLR00000000.1 Bac0015128 Bacteroides xylanisolvens strain An107 "Bacteroides xylanisolvens strain An107 is a Gram-negative, anaerobic bacterium distinguished by its ability to thrive in environments devoid of oxygen. This strain is part of the Bacteroides genus, which is commonly found in the gastrointestinal tracts of various organisms, where it plays a crucial role in the digestion of complex carbohydrates. The anaerobic nature of B. xylanisolvens strain An107 suggests that it relies on fermentation processes to metabolize substrates, contributing to the breakdown of plant polysaccharides, such as xylan, into simpler sugars and other metabolites.↵↵The negative Gram stain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic feature that may provide this strain with advantages in evading certain environmental stresses and contributing to its survival in anaerobic conditions. The metabolic capabilities of B. xylanisolvens strain An107 are likely essential for the maintenance of gut health, as they may influence the composition of the gut microbiome by facilitating the fermentation of dietary fibers.↵↵Moreover, the ability of Bacteroides species, including strain An107, to degrade complex carbohydrates underscores their potential role in nutrient cycling within their ecological niches. Understanding the specific functions and contributions of such strains can enhance our knowledge of gut microbiota interactions and their implications for host health, particularly in the context of dietary changes or gastrointestinal disorders." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 NFLX00000000.1 Bac0015129 Massilimicrobiota sp. An105 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Massiliimicrobium Massilimicrobiota sp. An105 1965540 NFLY00000000.1 Bac0015130 Lactobacillus gallinarum strain An101 "Lactobacillus gallinarum strain An101 is a Gram-positive, rod-shaped bacterium that is part of the lactic acid bacteria group. This strain is characterized by its ability to ferment sugars into lactic acid, a trait that is common among Lactobacillus species. The rod shape of L. gallinarum An101 may facilitate its colonization in various environments, including the gastrointestinal tracts of animals.↵↵As a member of the Lactobacillus genus, L. gallinarum strain An101 plays a significant role in the fermentation processes, which can contribute to the production of probiotic foods and the maintenance of gut health. Its Gram-positive nature indicates a thick peptidoglycan layer in its cell wall, which can provide resilience against environmental stressors. ↵↵Research into Lactobacillus strains has often highlighted their potential in biotechnological applications, including their use in animal feed to promote health and growth. The specific metabolic capabilities of L. gallinarum strain An101 may offer insights into its utility in such applications, particularly in poultry, where it could contribute to improved digestive efficiency.↵↵Ultimately, the ecological role of L. gallinarum strain An101 may extend beyond fermentation; it may interact with other microbial communities, influencing gut microbiota composition and function, which is critical for host health and nutrition. Further investigation into this strain's specific interactions within its ecosystem could reveal novel applications in agriculture and food production." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gallinarum Positive Rod 52242 NFLZ00000000.1 Bac0015131 Pseudomonas putida strain 1312 "Pseudomonas putida strain 1312 is a Gram-negative, rod-shaped bacterium that is nonsporulating and typically found in soil and wastewater environments. This strain exhibits a single-cell arrangement and is classified as a heterotroph, indicating its reliance on organic compounds as an energy source. As a facultative organism, P. putida strain 1312 is capable of thriving in both aerobic and anaerobic conditions, which enhances its adaptability to various ecological niches, particularly in environments where oxygen levels may fluctuate.↵↵The ability of P. putida strain 1312 to metabolize diverse organic substrates makes it of interest for bioremediation applications, especially in contaminated soil and wastewater. Its adaptability and metabolic versatility suggest that this strain plays a significant role in the degradation of pollutants, contributing to the detoxification of environments impacted by human activity. This unique ecological function highlights the potential of P. putida strain 1312 in sustainable environmental management strategies aimed at mitigating pollution and restoring ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NFSB00000000.1 Bac0015132 Arthrobacter agilis strain 4042 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter agilis 37921 NFSD00000000.1 Bac0015133 Escherichia coli strain CVAST0582 "Escherichia coli strain CVAST0582 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or singles. This strain thrives optimally at 37.0°C, suggesting a preference for warm-blooded hosts, which aligns with its habitat classification as host-associated. As a facultative anaerobe, E. coli strain CVAST0582 can grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its host. ↵↵The adaptability of E. coli strain CVAST0582 to different oxygen levels, combined with its association with host organisms, highlights its potential role in various biological processes within the microbiome. The ability to thrive at physiological temperatures may facilitate its involvement in metabolic interactions with host systems, possibly influencing nutrient absorption and immune responses. Further studies could elucidate the specific contributions of this strain to host health and its interactions within complex microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NFTV00000000.1 Bac0015134 Hydrogenophaga sp. IBVHS2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. IBVHS2 1985170 NFUT00000000.1 Bac0015135 Chitinophagaceae bacterium IBVUCB1 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophagaceae bacterium IBVUCB1 1985173 NFUW00000000.1 Bac0015136 Paenibacillus odorifer strain VTT E-133288 "Paenibacillus odorifer strain VTT E-133288 is a Gram-positive, rod-shaped bacterium that exhibits a characteristic cell arrangement in chains and is capable of sporulation. This strain is a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. It primarily utilizes a chemoheterotrophic mode of metabolism, deriving energy from organic compounds. The optimal growth temperature for this strain is approximately 30.0°C, indicating a preference for moderate thermal conditions. ↵↵Paenibacillus odorifer strain VTT E-133288 is found in diverse habitats, suggesting its adaptability and ecological versatility. This adaptability may contribute to its potential roles in various biogeochemical processes, especially in environments where organic matter decomposition is essential. The ability to form spores enhances its resilience against adverse conditions, allowing it to survive in fluctuating environments. ↵↵Overall, the traits of Paenibacillus odorifer strain VTT E-133288 highlight its ecological significance as a microbe capable of thriving in diverse conditions, potentially participating in nutrient cycling and organic matter degradation in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus odorifer Positive Rod Yes 1 Facultative Anaerobe 30 Chemoheterotroph Mesophilic Multiple Chains Sporulating 189426 NFUZ00000000.1 Bac0015137 Paraburkholderia hospita strain BS437 1043400843 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia hospita aerobic 169430 NFVC00000000.1 Bac0015138 Pacificimonas flava strain JLT2012 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingosinicellaceae Pacificimonas Pacificimonas flava 1234595 NFZT00000000.1 Bac0015139 Alkalilimnicola ehrlichii strain AK93 "Alkalilimnicola ehrlichii strain AK93 is a Gram-negative bacterium that thrives in aquatic environments, displaying the ability to respire both in the presence and absence of oxygen, characteristic of facultative anaerobes. This adaptability suggests a versatile metabolic capacity, allowing strain AK93 to exploit various ecological niches within its aquatic habitat. ↵↵The strain's Gram-negative classification implies the presence of a thin peptidoglycan layer and an outer membrane, features that may contribute to its resilience in fluctuating environmental conditions. Given its aquatic habitat, Alkalilimnicola ehrlichii strain AK93 could play a significant role in nutrient cycling and the maintenance of microbial communities within freshwater ecosystems. Its facultative anaerobic nature allows it to thrive in both oxic and anoxic conditions, potentially facilitating its survival in environments that experience periodic fluctuations in oxygen availability.↵↵Overall, the presence of Alkalilimnicola ehrlichii strain AK93 in aquatic systems could indicate the microbe's contribution to the metabolic diversity and functional resilience of microbial communities, particularly in response to environmental stresses such as changes in oxygen levels or nutrient availability. This adaptability underscores the importance of exploring such microorganisms for insights into biogeochemical processes in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Alkalilimnicola Alkalilimnicola ehrlichii Negative Facultative anaerobe Aquatic 351052 NFZW00000000.1 Bac0015140 Acinetobacter baumannii strain PR354 "Acinetobacter baumannii strain PR354 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is capable of thriving in various habitats. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which allows it to exploit a wide range of environments for nutrient acquisition. Optimal growth for A. baumannii strain PR354 occurs at 37.0°C, a temperature that aligns with the physiological conditions found in many host organisms.↵↵As an aerobic organism, A. baumannii strain PR354 requires oxygen for its metabolic processes, which further underscores its adaptability to environments where oxygen is readily available. This trait, combined with its heterotrophic lifestyle, suggests that the bacterium may play a significant role in nutrient cycling within diverse ecosystems, including soil and water environments where organic matter is present.↵↵The ability of A. baumannii strain PR354 to exist in multiple habitats highlights its ecological versatility and potential for survival under varying environmental stresses. This adaptability may contribute to its persistence in both natural and anthropogenic settings, making it a subject of interest for further studies on microbial ecology and the dynamics of microbial communities in diverse environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NGCH00000000.1 Bac0015141 Methanosphaera stadtmanae strain PA5 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae 2317 NGJK00000000.1 Bac0015142 Vagococcus vulneris strain SS1995 43 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus vulneris 1977869 NGJS00000000.1 Bac0015143 Vagococcus bubulae strain SS1994 60 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus bubulae 1977868 NGJT00000000.1 Bac0015144 Vagococcus fluvialis strain NCDO 2497 28 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus fluvialis 2738 NGJX00000000.1 Bac0015145 Vagococcus carniphilus strain SS1714 37 "Vagococcus carniphilus strain SS1714 37 is a Gram-positive, spherical bacterium that exhibits notable characteristics pertinent to its classification within the Vagococcus genus. Its Gram-positive nature suggests a thicker peptidoglycan layer in the cell wall, which may contribute to its resilience in various environmental conditions. The spherical shape indicates that it may reproduce by binary fission, a common reproductive method among cocci, which can influence its population dynamics and ecological interactions.↵↵While specific metabolic capabilities and environmental niches are not detailed in the available data, Gram-positive bacteria such as Vagococcus species are often found in diverse habitats, including soil, water, and animal-associated environments. The morphology and Gram-positive nature of Vagococcus carniphilus strain SS1714 37 may position it within a complex microbial community, where it could play a role in nutrient cycling or symbiotic relationships.↵↵Furthermore, the existence of this strain suggests a potential adaptive mechanism that allows it to thrive in specific ecological niches, which may involve interactions with other microorganisms. This adaptability could be significant for its survival and ecological role, indicating a potential for participation in complex microbial ecosystems where cooperation or competition with other species occurs. The study of Vagococcus carniphilus strain SS1714 37 may provide insights into the functional diversity and ecological significance of Gram-positive cocci in their natural habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus carniphilus Gram-positive sphere 218144 NGKB00000000.1 Bac0015146 Vagococcus acidifermentans strain LMG 24798 40 "Vagococcus acidifermentans strain LMG 24798 40 is a Gram-positive, spherical bacterium characterized by its facultative aerobe/anaerobe metabolism and non-spore-forming nature. This strain demonstrates optimal growth at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. The ability to thrive in both aerobic and anaerobic environments suggests a versatile metabolic capability, allowing it to adapt to varying oxygen levels, which may be advantageous in diverse ecological niches.↵↵In addition, the spherical morphology of Vagococcus acidifermentans strain LMG 24798 40 may influence its interactions within microbial communities, potentially affecting nutrient cycling and symbiotic relationships in its habitat. The physiological characteristics of this strain position it as a significant player in its ecosystem, possibly contributing to fermentation processes or organic matter decomposition. Further investigation into its ecological roles could reveal important insights into the dynamics of microbial communities where this strain is prevalent." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus acidifermentans Gram-positive sphere non-motile facultative aerobe/anaerobe 25 mesophilic non-spore-forming 564710 NGKC00000000.1 Bac0015147 Acinetobacter baumannii strain AB360 "Acinetobacter baumannii strain AB360 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotroph, relying on organic compounds as its energy source. As an aerobic organism, A. baumannii strain AB360 requires oxygen for its metabolic processes.↵↵The habitat of A. baumannii is diverse, indicating its adaptability to various environmental conditions. This adaptability may contribute to the organism's resilience in different ecological niches, including both natural and artificial environments. The ability to occupy multiple habitats suggests that A. baumannii strain AB360 might play a role in nutrient cycling and interactions with other microbial populations, which could be important in both environmental microbiology and potential clinical settings.↵↵Given its optimal growth temperature of 37.0°C, A. baumannii strain AB360 may be particularly well-suited to thrive in warm environments, potentially including those associated with human activity. This trait, combined with its aerobic metabolism and heterotrophic lifestyle, emphasizes the organism's ecological versatility and its capacity to exploit a variety of organic substrates in its surroundings." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NGKM00000000.1 Bac0015148 Enterococcus sp. 5B3_DIV0040 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 5B3_DIV0040 1834182 NGLC00000000.1 Bac0015149 Enterococcus sp. 4E1_DIV0656 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 4E1_DIV0656 1834180 NGLF00000000.1 Bac0015150 Enterococcus sp. 2G9_DIV0600 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 2G9_DIV0600 1834173 NGLL00000000.1 Bac0015151 Enterococcus faecium strain 1F1_DIV0518 "Enterococcus faecium strain 1F1_DIV0518 is a Gram-positive, cocci-shaped bacterium characterized as a facultative anaerobe. This strain is notably isolated from fermented mare milk, indicating its potential association with dairy fermentation processes. ↵↵As a member of the Enterococcus genus, E. faecium is known for its resilience and ability to thrive in various environmental conditions, including the presence of oxygen and its absence. The facultative anaerobic nature of strain 1F1_DIV0518 allows it to adapt to fluctuating oxygen levels, which is essential for survival in diverse habitats, including those enriched with organic substrates like fermented dairy products.↵↵The isolation of this strain from fermented mare milk suggests a role in the fermentation process, potentially contributing to the development of flavor and texture in dairy products. The presence of E. faecium in such habitats may also indicate its ability to utilize lactose and other sugars present in milk, further underscoring its adaptive metabolic capabilities. ↵↵Understanding the specific traits and habitat of Enterococcus faecium strain 1F1_DIV0518 enhances our knowledge of microbial communities involved in dairy fermentation and may provide insights into the fermentation dynamics of non-conventional dairy products. This highlights the ecological significance of E. faecium in traditional fermentation practices and its potential applications in food science." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NGLS00000000.1 Bac0015152 Enterococcus sp. 10F3_DIV0382 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 10F3_DIV0382 1834165 NGMF00000000.1 Bac0015153 Enterococcus sp. 6C8_DIV0013 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 6C8_DIV0013 1987385 NGMT00000000.1 Bac0015154 Enterococcus termitis strain 4C2_DIV0658 "Enterococcus termitis strain 4C2_DIV0658 is a Gram-positive, ovoid-shaped bacterium that exhibits spore-forming capabilities and thrives at an optimal temperature of 37.0°C. This strain is notable for its unique morphological characteristics and its ability to form spores, which may contribute to its survival in various environments, although specific ecological roles have yet to be elucidated. ↵↵The Gram-positive nature of this microbe suggests a thick peptidoglycan layer in its cell wall, which is a common feature among many bacteria in the Enterococcus genus. This characteristic not only influences its staining properties but may also provide insights into its resilience against certain environmental stresses. The ovoid shape is indicative of a specific cellular morphology that could affect its growth and interactions with other microorganisms.↵↵The optimal growth temperature of 37.0°C aligns with the temperature of many mammalian hosts, suggesting that this strain could potentially adapt to environments that mimic host conditions, although its specific ecological niche remains to be determined. The ability to form spores may allow Enterococcus termitis strain 4C2_DIV0658 to endure unfavorable conditions, enhancing its survival and potential for colonization in diverse habitats.↵↵In summary, while the exact ecological roles of Enterococcus termitis strain 4C2_DIV0658 have yet to be defined, its traits indicate a potential for adaptability and resilience in fluctuating environments, which may warrant further investigation into its ecological significance and applications." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus termitis Gram-positive ovoid non-motile 37 mesophilic spore-forming 332950 NGNA00000000.2 Bac0015155 Citrobacter freundii strain MGH152 "Citrobacter freundii strain MGH152 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This strain does not form spores and is commonly found in various environments, including hospital sewage, the intestinal tract, sewage systems, soil, and surface waters. ↵↵As a member of the Enterobacteriaceae family, C. freundii is notable for its adaptability to different ecological niches, which may be attributed to its ability to thrive in both aerobic and anaerobic conditions. Its presence in hospital sewage suggests a potential role in the breakdown of organic matter in these environments, while its occurrence in surface waters and soils indicates its ability to survive outside of human-associated habitats.↵↵The versatility of C. freundii, particularly strain MGH152, in colonizing diverse environments highlights its ecological importance and the potential interactions it may have with other microbial communities. Its survival in both natural and anthropogenic settings suggests that it may contribute to nutrient cycling processes, particularly in environments impacted by human activity. Understanding the ecological roles of such strains can provide valuable insights into their contributions to microbial dynamics and their potential implications for environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NGRF00000000.1 Bac0015156 Sphingobium sp. GW456-12-10-14-TSB1 unitig_4.quiver.pilon Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. GW456-12-10-14-TSB1 1987165 NGUN00000000.1 Bac0015157 Polynucleobacter aenigmaticus strain MWH-K35W1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter aenigmaticus 1743164 NGUO00000000.1 Bac0015158 Pseudomonas putida strain UV4/95 "Pseudomonas putida strain UV4/95 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells and is classified as a nonsporulating organism. This strain is a heterotroph, relying on organic compounds for energy, and it thrives in varied environments, particularly in soil and wastewater habitats. Its facultative anaerobic nature allows it to adapt to both aerobic and anaerobic conditions, enhancing its survival in diverse ecological niches.↵↵Pseudomonas putida species are known for their metabolic versatility, which enables them to degrade a wide range of organic pollutants, making them of interest in bioremediation applications. Strain UV4/95, in particular, may possess unique metabolic pathways that facilitate the breakdown of specific environmental contaminants, although these pathways are not detailed in the current trait data.↵↵This strain's ability to thrive in wastewater suggests a potential role in nutrient cycling and the degradation of organic matter, contributing to soil health and ecosystem stability. Thus, Pseudomonas putida strain UV4/95 exemplifies the ecological importance of microbial communities in maintaining environmental quality through their metabolic activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NHBC00000000.1 Bac0015159 bacterium TMED6 bacterium TMED6 1986783 NHBL00000000.1 Bac0015160 Alteromonadaceae bacterium TMED7 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonadaceae bacterium TMED7 1986650 NHBM00000000.2 Bac0015161 Rhodospirillaceae bacterium TMED8 153777 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillaceae bacterium TMED8 1986645 NHBN00000000.1 Bac0015162 Phycisphaera sp. TMED9 74328 Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Phycisphaera Phycisphaera sp. TMED9 1986611 NHBO00000000.2 Bac0015163 bacterium TMED15 bacterium TMED15 1986651 NHBU00000000.1 Bac0015164 Crocinitomicaceae bacterium TMED16 24357 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Crocinitomicaceae bacterium TMED16 1986722 NHBV00000000.1 Bac0015165 Synechococcus sp. TMED19 125451 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. TMED19 1986596 NHBY00000000.1 Bac0015166 Candidatus Endolissoclinum sp. TMED26 158276 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Candidatus Endolissoclinum Candidatus Endolissoclinum sp. TMED26 1986636 NHCF00000000.1 Bac0015167 Micavibrio sp. TMED27 68231 Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp. TMED27 1986607 NHCG00000000.1 Bac0015168 Gammaproteobacteria bacterium TMED34 106876 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium TMED34 1986761 NHCN00000000.1 Bac0015169 Candidatus Endolissoclinum sp. TMED37 69563 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Candidatus Endolissoclinum Candidatus Endolissoclinum sp. TMED37 1986638 NHCQ00000000.1 Bac0015170 Flavobacteriaceae bacterium TMED42 58545 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium TMED42 1986716 NHCV00000000.2 Bac0015171 Cellvibrionales bacterium TMED47 114864 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionales bacterium TMED47 1986841 NHDA00000000.2 Bac0015172 Hyphomicrobiaceae bacterium TMED74 128116 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Hyphomicrobiaceae bacterium TMED74 1986774 NHEB00000000.2 Bac0015173 Euryarchaeota archaeon TMED173 85922 Methanobacteriati Methanobacteriota Euryarchaeota archaeon TMED173 1986688 NHHW00000000.1 Bac0015174 Pelagibacteraceae bacterium TMED195 143009 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Pelagibacteraceae bacterium TMED195 1986631 NHIS00000000.2 Bac0015175 Euryarchaeota archaeon TMED280 33285 Methanobacteriati Methanobacteriota Euryarchaeota archaeon TMED280 1986695 NHLZ00000000.1 Bac0015176 Deinococcus indicus strain DR1 "Deinococcus indicus strain DR1 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for mesophilic conditions. As a member of the genus Deinococcus, it is noteworthy for its resilience in various environmental conditions, although the specific adaptations of strain DR1 require further investigation.↵↵The Gram-negative cell wall structure of Deinococcus indicus strain DR1 likely contributes to its robustness and ability to withstand oxidative stress, a characteristic commonly associated with members of the Deinococcus genus. While the strain does not form spores, its aerobic requirement suggests that it engages in aerobic respiration, utilizing oxygen as a terminal electron acceptor to support its metabolic processes.↵↵The ecological role of Deinococcus indicus strain DR1 may be significant in its native habitat, potentially contributing to biogeochemical cycles in environments where oxygen is available. Its growth at an optimal temperature of 29.0°C suggests it could inhabit moderate climates or environments with fluctuating temperatures, where it may play a role in the degradation of organic matter or in the bioremediation of contaminated sites. Understanding the specific interactions and ecological niches of this strain could provide insights into its potential applications in biotechnology and environmental microbiology." Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus indicus Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 223556 NHMK00000000.1 Bac0015177 Rhodococcus sp. NCIMB 12038 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. NCIMB 12038 933800 NHML00000000.1 Bac0015178 Turicimonas muris strain YL45 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Turicimonas Turicimonas muris anaerobic 1796652 NHMP00000000.1 Bac0015179 Bifidobacterium animalis subsp. animalis strain YL2 "Bifidobacterium animalis subsp. animalis strain YL2 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives optimally at 39.0°C and exhibits anaerobic growth conditions. This strain is part of the Bifidobacterium genus, which is known for its role in gut microbiota and its potential benefits to gastrointestinal health. ↵↵The anaerobic nature of B. animalis subsp. animalis strain YL2 suggests that it occupies niches within the gastrointestinal tract where oxygen levels are low, contributing to the microbial diversity and metabolic activities in these environments. Its ability to inhabit multiple habitats indicates a versatile survival strategy, which may support its adaptation to various ecological niches, including those found in the intestines of different host species.↵↵The optimal growth temperature of 39.0°C suggests that this strain may be particularly well-suited to warm-blooded animals, where it could play a role in digestion and nutrient absorption. This temperature preference highlights its potential significance in the probiotic industry, where strains that can withstand the physiological conditions of the host are particularly valued. Overall, the traits of Bifidobacterium animalis subsp. animalis strain YL2 underscore its importance as a beneficial microbe within anaerobic environments, particularly in the context of gastrointestinal health and microbial community dynamics." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis Positive Rod No 1 1 Anaerobe 39 Mesophilic Multiple Free living Nonsporulating 28025 NHMR00000000.2 Bac0015180 Arsenophonus sp. ENCA Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Arsenophonus Arsenophonus sp. ENCA 1987579 NHNG00000000.1 Bac0015181 Cellvibrio mixtus strain PSBB022 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrio Cellvibrio mixtus 39650 NHNI00000000.1 Bac0015182 Pseudoalteromonas sp. GCY Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. GCY 2003316 NHNM00000000.1 Bac0015183 Bacillus thuringiensis strain HBF-18 "Bacillus thuringiensis strain HBF-18 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic respiration. This strain is host-associated, indicating a potential relationship with specific host organisms, which may influence its ecological role and functional capabilities within that context. ↵↵As a member of the Bacillus genus, strain HBF-18 is likely to exhibit resilience in various environments, particularly those associated with organic matter or associated with living organisms, where it may play a role in nutrient cycling or host interactions. The facultative anaerobic nature of this strain suggests it can metabolize under both aerobic and anaerobic conditions, enhancing its adaptability to fluctuating environmental oxygen levels.↵↵Moreover, the sporulation ability underscores its potential for survival in adverse conditions, allowing it to persist in environments where nutrients may be scarce or where competition is fierce. This trait not only contributes to its survival strategy but may also facilitate its dissemination and colonization of new habitats associated with its hosts.↵↵Overall, the ecological insight into Bacillus thuringiensis strain HBF-18 suggests that its interactions with host organisms may be pivotal in shaping microbial communities and influencing the dynamics of nutrient availability in its environment. The potential for mutualistic or competitive relationships with other microbes further underscores the importance of understanding this strain's role within its habitat." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NHNS00000000.1 Bac0015184 Halorubrum sp. C191 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. C191 1383842 NHNZ00000000.1 Bac0015185 Butyricicoccus porcorum strain BB10 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus porcorum 1945634 NHOC00000000.1 Bac0015186 Yersinia frederiksenii strain CFSAN060535 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia frederiksenii environment; food 29484 NHOJ00000000.1 Bac0015187 Paraburkholderia caledonica strain Bk sc_041 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caledonica 134536 NHOM00000000.1 Bac0015188 Inquilinus limosus strain Inq sc_233 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Inquilinus Inquilinus limosus 171674 NHON00000000.1 Bac0015189 Halorubrum sp. Ib24 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. Ib24 1383850 NHOX00000000.1 Bac0015190 Halorubrum sp. Hd13 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. Hd13 1480728 NHOY00000000.1 Bac0015191 Halorubrum ezzemoulense strain Ga36 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ezzemoulense 337243 NHOZ00000000.1 Bac0015192 Halorubrum ezzemoulense strain Ga2p Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ezzemoulense 337243 NHPA00000000.1 Bac0015193 Halorubrum sp. Ea1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. Ea1 1480718 NHPG00000000.1 Bac0015194 Halorubrum distributum strain E8 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum distributum 29283 NHPH00000000.1 Bac0015195 Microbacterium sp. AISO3 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. AISO3 2002831 NHRF00000000.1 Bac0015196 Eikenella corrodens strain KCOM 1378 B230_1_6 "Eikenella corrodens strain KCOM 1378 B230_1_6 is a Gram-negative, rod-shaped bacterium with a facultative anaerobic metabolism, commonly found in various human-associated habitats including the gastrointestinal tract, genital tracts, oral cavity, oropharyngeal regions, and upper respiratory tract. This strain's adaptability to both aerobic and anaerobic environments allows it to thrive in diverse ecological niches within the human body.↵↵Eikenella corrodens is typically part of the normal microbial flora, contributing to the complex microbiome of its habitats. Its presence in the oral cavity and upper respiratory tract suggests a role in maintaining microbial balance, potentially participating in interactions with other commensal organisms. The capability of Eikenella corrodens to inhabit both anaerobic sites, such as the gastrointestinal tract, and more oxygen-rich environments, like the oral cavity, highlights its versatile metabolic strategies.↵↵The ecological role of Eikenella corrodens may extend to the breakdown of organic materials within its habitats, which could influence nutrient cycling and the overall health of the microbiome. Understanding the specific traits and behaviors of strain KCOM 1378 B230_1_6 adds to the knowledge of Eikenella corrodens as a species adapted to a range of environments within the human body, emphasizing its significance in the context of human-associated microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella corrodens Negative Rod Facultative anaerobe gastrointestinal; genital tracts; intestinal; oral cavity; oropharyngeal; oropharynx; respiratory; upper respiratory tract; urogenital tract 539 NHRS00000000.1 Bac0015197 Porphyromonas gingivalis strain KCOM 2797 JS2_44 "Porphyromonas gingivalis strain KCOM 2797 JS2_44 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions and has an optimal growth temperature of 37.0°C. This strain is associated with host environments, suggesting its adaptation to specific biological niches within its host organisms. ↵↵In terms of its morphological characteristics, the rod shape is typical of many members of the Bacteroidetes phylum, to which P. gingivalis belongs. The bacterium's Gram-negative staining indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a structural feature that may contribute to its survival in the challenging anaerobic habitats typically found within the oral cavity and periodontal tissues.↵↵The anaerobic requirement of this strain highlights its potential role in the complex microbial communities of the oral microbiome, where oxygen levels are minimal. The optimal growth temperature of 37.0°C aligns with the physiological temperature of the human body, providing insights into its potential interactions within the host environment.↵↵Understanding the traits of Porphyromonas gingivalis strain KCOM 2797 JS2_44, particularly its anaerobic lifestyle and rod morphology, can offer valuable insights into its ecological roles in the oral cavity and its interactions with other microbial species in host-associated habitats. Such knowledge may further guide future research into its contributions to microbial dynamics and health outcomes within these environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 837 NHRU00000000.1 Bac0015198 Prevotella nigrescens strain KCOM 1102 KB5_8 "Prevotella nigrescens strain KCOM 1102 KB5_8 is a Gram-negative anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This strain is part of the Prevotella genus, which is known for its role in the human microbiome, particularly within the oral cavity and gastrointestinal tract. The anaerobic nature of P. nigrescens indicates that it metabolizes substrates through fermentation processes, which are typical of bacteria adapted to low-oxygen environments. ↵↵The Gram-negative cell wall structure of this strain consists of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various ecological niches where oxygen is limited. As a member of the human microbiota, P. nigrescens is involved in complex interactions with host organisms and other microbial species, potentially influencing local metabolic processes and ecological balances.↵↵Understanding the traits of Prevotella nigrescens strain KCOM 1102 KB5_8 emphasizes the importance of anaerobic bacteria in maintaining a healthy microbiome. These bacteria may play a crucial role in nutrient cycling and the modulation of host immune responses, highlighting their significance in both health and disease states within the human body. Further investigation into this strain could reveal insights into its contributions to microbial community dynamics and host-microbe interactions in anaerobic environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella nigrescens Negative Anaerobe 28133 NHRW00000000.1 Bac0015199 Enterocloster clostridioformis strain YL32 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster clostridioformis piglet gut 1531 NHTR00000000.1 Bac0015200 Escherichia coli strain 1608190062 "Escherichia coli strain 1608190062 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 1608190062 possesses the metabolic flexibility to utilize both aerobic and anaerobic respiration, allowing it to survive in various environments within the host. ↵↵The strain's negative Gram stain results from its unique cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is significant for its interactions with the host immune system and potential implications in microbial ecology within the gastrointestinal tract. ↵↵Given its optimal growth conditions and metabolic capabilities, E. coli strain 1608190062 likely plays a role in the complex microbial communities associated with its host, contributing to processes such as nutrient absorption and maintaining gut homeostasis. Understanding the specific traits of this strain enhances our knowledge of its ecological roles and interactions within host-associated microbiomes, which may have implications for health and disease management in various organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NHYU00000000.1 Bac0015201 Pantoea sp. VS1 192__len__253 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. VS1 2003658 NHZE00000000.1 Bac0015202 Streptomyces cinnamoneus strain ATCC 21532 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cinnamoneus 53446 NHZO00000000.1 Bac0015203 Lactobacillus johnsonii strain UMNLJ114 "Lactobacillus johnsonii strain UMNLJ114 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may enhance its adaptability within host-associated habitats. Optimal growth of L. johnsonii UMNLJ114 occurs at a temperature of 25.0°C, suggesting a potential preference for cooler environments that could be reflective of its ecological niche.↵↵As a member of the Lactobacillus genus, this strain is likely involved in various fermentation processes, contributing to the microbiota in host organisms. The host-associated habitat implies that L. johnsonii UMNLJ114 may play a role in maintaining microbial balance and may contribute to the host's overall health through metabolic activities. Given its chain-forming habit and rod shape, it may also interact with other microbial species in a manner that influences community dynamics.↵↵Understanding the specific traits of L. johnsonii UMNLJ114 can provide insights into its ecological role, particularly in relation to its adaptability and interactions within the host environment. This adaptability may be crucial for its survival and function in complex microbial ecosystems, potentially influencing host health and disease resistance." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains Non-pathogenic 33959 NIBD00000000.1 Bac0015204 Anaeromicrobium sediminis strain DY2726D Seq55 "Anaeromicrobium sediminis strain DY2726D Seq55 is a Gram-negative, rod-shaped bacterium that is strictly anaerobic and non-spore-forming, with an optimal growth temperature of 37.0°C. As a heterotroph, this strain derives its energy from organic compounds, which underscores its role in anaerobic environments where organic matter is available for microbial metabolism. ↵↵The combination of its anaerobic requirement and ability to utilize organic substrates suggests that strain DY2726D may play a significant role in the degradation of organic materials in sedimentary environments. This characteristic could be particularly relevant in biogeochemical cycling, as it may contribute to the breakdown of complex organic compounds, thereby facilitating nutrient availability for other microorganisms in the ecosystem. Furthermore, understanding the metabolic capabilities of Anaeromicrobium sediminis could provide insights into its potential applications in bioremediation or wastewater treatment processes, where anaerobic conditions are prevalent. ↵↵Overall, the traits of Anaeromicrobium sediminis strain DY2726D Seq55 highlight its ecological significance in anaerobic habitats, where it may engage in important interactions with other microbial communities and contribute to the overall metabolic processes of its environment." Bacillati Bacillota Clostridia Peptostreptococcales Thermotaleaceae Anaeromicrobium Anaeromicrobium sediminis Gram-negative / Gram-positive rod anaerobic 37 heterotroph mesophilic non-spore-forming 1478221 NIBG00000000.1 Bac0015205 Enterococcus sp. 12F9_DIV0723 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. 12F9_DIV0723 1834169 NIBK00000000.1 Bac0015206 Xenorhabdus ehlersii strain DSM 16337 Xehl_118 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus ehlersii 290111 NIBT00000000.1 Bac0015207 Capnocytophaga sputigena strain H6490 2 "Capnocytophaga sputigena strain H6490 2 is a Gram-negative, anaerobic bacterium that resides primarily in the submucosal sulcus of the oral cavity. This strain is part of the Capnocytophaga genus, which is characterized by its filamentous morphology and ability to thrive in environments devoid of oxygen. ↵↵The anaerobic nature of C. sputigena strain H6490 2 suggests that it plays a role in the complex microbial communities found in the oral ecosystem, where oxygen levels can be minimal, particularly in subgingival areas. The submucosal habitat indicates a potential association with periodontal tissues, which may influence its interactions with other microorganisms present in the oral cavity. ↵↵Research on Capnocytophaga species has highlighted their involvement in the oral microbiome, where they may contribute to the metabolic processes that shape the local environment. Given its specific habitat and anaerobic lifestyle, C. sputigena strain H6490 2 may engage in nutrient cycling within the submucosal sulcus, potentially influencing the health of the surrounding tissues. Understanding the role of this strain in the oral microbiome can provide insights into the dynamics of microbial interactions and their implications for oral health." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sputigena negative anaerobic submucosal sulcus 1019 NIBW00000000.1 Bac0015208 Fimbriiglobus ruber strain SP5 Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Fimbriiglobus Fimbriiglobus ruber 1908690 NIDE00000000.1 Bac0015209 Pseudomonas lactis strain PpR24 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lactis 1615674 NIFJ00000000.1 Bac0015210 Streptococcus thermophilus strain LMG S-29186 "Streptococcus thermophilus strain LMG S-29186 is a Gram-positive cocci that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 45.0 °C, suggesting a preference for warmer environments. As an anaerobic organism, it requires conditions devoid of oxygen for growth and metabolism. ↵↵The habitat of S. thermophilus strain LMG S-29186 is diverse, indicating its adaptability to various ecological niches. While the specific environments it occupies are not detailed, the presence of such a strain in multiple habitats underscores its potential role in different microbial communities, particularly in thermophilic conditions where it may participate in fermentation processes. ↵↵The ability of this strain to thrive at elevated temperatures and its anaerobic lifestyle may contribute to its significance in industrial applications, particularly in dairy fermentation, where temperature control is crucial. The physiological traits of S. thermophilus strain LMG S-29186 highlight its ecological versatility and potential utility in biotechnological processes, emphasizing the importance of temperature in microbial ecology and metabolic functions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1308 NIGT00000000.1 Bac0015211 Vibrio sp. T21 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. T21 2007197 NIGZ00000000.1 Bac0015212 Mediterraneibacter gnavus strain RJX1118 RJX1118_125 "Mediterraneibacter gnavus strain RJX1118 RJX1118_125 is a Gram-positive, coccoid bacterium characterized as a nonsporulating, chemoheterotrophic microbe. This strain thrives optimally at a temperature of 37.0 °C, aligning with the physiological conditions typically found in the intestinal environments of animals. As an anaerobe, M. gnavus strain RJX1118 thrives in oxygen-depleted settings, which is consistent with its habitat within the animal intestinal microflora.↵↵The presence of M. gnavus in the gut microbiome suggests its potential role in the complex interactions among gut microbial communities and their hosts. Given its anaerobic nature and energy acquisition strategy, it likely participates in the fermentation processes occurring in the gut, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities may influence gut health and host metabolism, indicating an important niche for this microbe in maintaining intestinal homeostasis. Further studies could elucidate the specific contributions of M. gnavus strain RJX1118 to gut microbiota dynamics and overall host health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 NIHM00000000.1 Bac0015213 Mediterraneibacter gnavus strain RJX1124 RJX1124_789 "Mediterraneibacter gnavus strain RJX1124 (RJX1124_789) is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, specifically within the intestinal microflora of animals. This strain exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources to support its growth and maintenance. The optimal growth temperature for RJX1124 is approximately 37.0°C, aligning with the physiological conditions typically found in the animal gut.↵↵The presence of Mediterraneibacter gnavus in the intestinal microflora suggests a potential role in the complex microbial ecosystem of the gut. While the specific functions of this strain within its habitat have not been detailed, it may contribute to the overall metabolic processes that are essential for digestion and nutrient absorption in host organisms. The anaerobic nature of this bacterium indicates that it is well-adapted to the low-oxygen environment of the intestine, where it likely engages in symbiotic interactions with the host and other microbial inhabitants. Further studies on the metabolic capabilities and interactions of RJX1124 could enhance our understanding of its ecological roles and significance in gut health and function." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 NIHS00000000.1 Bac0015214 Mediterraneibacter gnavus strain RJX1125 RJX1125_284 "Mediterraneibacter gnavus strain RJX1125 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic chemoheterotroph, with an optimal growth temperature of 37.0 °C. This strain is part of the intestinal microflora of animals, where it likely plays a significant role in the complex ecosystem of gut microbiota. ↵↵As a member of the gut microbiome, M. gnavus strain RJX1125 may contribute to various metabolic processes, including the fermentation of dietary fibers and the production of short-chain fatty acids, which are important for maintaining gut health and overall host metabolism. The anaerobic nature of this bacterium suggests that it is well-adapted to the oxygen-limited environment of the intestinal tract, where it may interact with other microbial communities and host tissues.↵↵Understanding the specific functions and interactions of M. gnavus strain RJX1125 within the intestinal ecosystem could provide valuable insights into its potential contributions to host health and disease. The strain's capacity to utilize a range of organic substrates as an energy source may further highlight its adaptability and significance in the dynamic environment of the gut microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 NIHT00000000.1 Bac0015215 Mediterraneibacter gnavus strain RJX1128 RJX1128_241 "Mediterraneibacter gnavus strain RJX1128 (RJX1128_241) is a Gram-positive, nonsporulating coccus that thrives as a chemoheterotroph within the anaerobic environment of animal intestinal microflora. This strain exhibits optimal growth at 37.0°C, which aligns with the typical body temperature of many host animals, suggesting an adaptation to the warm, nutrient-rich conditions found in the gastrointestinal tract. ↵↵As a member of the gut microbiota, M. gnavus strain RJX1128 may play a role in the complex interactions within the intestinal ecosystem, potentially influencing digestion or the metabolic processes of its host. The anaerobic requirement indicates that it may contribute to fermentative processes, which are essential for energy extraction from complex carbohydrates in the gut environment. ↵↵Understanding the characteristics of M. gnavus strain RJX1128 can provide insights into its potential functional roles in the microbiome, including contributions to gut health or metabolic pathways. Future studies could explore its interactions with other gut microbes and its overall impact on host health, particularly in the context of maintaining a balanced intestinal microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 NIHW00000000.1 Bac0015216 Escherichia coli strain FC10225 "Escherichia coli strain FC10225 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, reflecting a likely adaptation to host-associated environments, such as the gastrointestinal tract of warm-blooded animals. E. coli strains, including FC10225, are known to exhibit facultative anaerobic metabolism, allowing them to survive in both aerobic and anaerobic conditions. ↵↵The ability of E. coli strain FC10225 to adapt to varying oxygen levels may provide it with a competitive advantage in diverse ecological niches within host organisms. This facultative anaerobic nature may facilitate its survival and proliferation in the fluctuating oxygen environments found in the intestinal microflora, where oxygen levels can vary significantly due to host metabolic activity and microbial interactions. ↵↵The association of this strain with host environments highlights its potential role in the complex dynamics of the gut microbiome, where it may contribute to nutrient processing and microbial community structure. Further research into E. coli strain FC10225 could provide insights into its specific interactions within host-associated microbiomes and its functional contributions to gut health and homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NIIS00000000.1 Bac0015217 Saccharibacillus sp. O16 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Saccharibacillus Saccharibacillus sp. O16 456492 NIOB00000000.1 Bac0015218 Clostridium thermosuccinogenes strain DSM 5806 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium thermosuccinogenes 84032 NIOJ00000000.1 Bac0015219 Avrilella dinanensis strain UR159 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Avrilella Avrilella dinanensis 2008672 NIPO00000000.1 Bac0015220 Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b "Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b is a Gram-negative bacterium characterized by its slender, curved rod shape. As a member of the Campylobacter genus, this strain exhibits typical features associated with this group, including a microaerophilic growth requirement, thriving in environments with reduced oxygen levels. The strain is notable for its motility, which is facilitated by a single polar flagellum, enabling efficient movement through viscous environments.↵↵This strain is part of a larger clade of Campylobacter species often associated with the gastrointestinal tracts of various animals, particularly livestock. While specific pathogenicity traits for strain VP28b are not detailed, Campylobacter species generally play significant roles in gut microbiota dynamics and can be implicated in enteric infections. Furthermore, C. hyointestinalis has been observed in association with cases of enteritis in pigs and other animals, hinting at its potential relevance in veterinary medicine.↵↵The ecological significance of Campylobacter hyointestinalis subsp. hyointestinalis strain VP28b lies in its adaptability to microaerobic conditions and its capacity to colonize the intestinal tracts of hosts. This adaptability suggests a potential role in nutrient cycling within the gut microbiome, contributing to the overall health and metabolic processes of the host organism. Further understanding of this strain's ecological interactions could provide insights into its role within complex microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis Negative 198 NIQS00000000.1 Bac0015221 Pseudomonas sediminis strain PI11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sediminis 1691904 NIQU00000000.1 Bac0015222 Fusobacterium polymorphum strain KCOM 1248 (=ChDC F113) F113_16 "Fusobacterium polymorphum strain KCOM 1248 (also known as ChDC F113 or F113_16) is a Gram-negative, nonsporulating rod-shaped bacterium that typically arranges itself in pairs. This strain is a chemoheterotroph, deriving its energy from organic compounds, and thrives in anaerobic environments, making it well-suited for life in the host gut, where oxygen levels are minimal. The optimal growth temperature for this bacterium is 37.0°C, which aligns with the typical physiological conditions found within mammalian hosts.↵↵As a member of the Fusobacterium genus, strain KCOM 1248 may participate in complex microbial interactions within the gut microbiota, contributing to the overall metabolic processes and health of the host. The unique characteristic of this strain, along with its anaerobic and gut-dwelling lifestyle, suggests its potential role in fermentation processes, which could influence nutrient availability and gut health. Moreover, the arrangement of cells in pairs may facilitate specific interactions within microbial communities, potentially impacting community dynamics and stability. Understanding the traits of Fusobacterium polymorphum strain KCOM 1248 can provide insights into its ecological roles and contributions to gut microbiome functionality." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NIRK00000000.1 Bac0015223 Fusobacterium polymorphum strain KCOM 1267(=ChDC F290) F290_28 "Fusobacterium polymorphum strain KCOM 1267 (also known as ChDC F290 or F290_28) is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs. This strain is a nonsporulating, anaerobic chemoheterotroph, thriving optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within the host gut environment.↵↵As a member of the Fusobacterium genus, F. polymorphum strain KCOM 1267 is adapted to anaerobic conditions, which are prevalent in the gastrointestinal tract. The bacterium relies on a variety of organic compounds as energy sources, highlighting its role in the complex microbial community of the gut, where it may participate in the fermentation processes that contribute to nutrient availability and gut health.↵↵The specific pairing arrangement of cells may influence its interactions with other gut microbiota and the host. Such arrangements could facilitate communication between cells or enhance cooperative behaviors within microbial communities. Understanding the traits of Fusobacterium polymorphum strain KCOM 1267 may provide insights into its functional roles in the gut microbiome, particularly in relation to maintaining microbial balance and supporting metabolic processes. Further research could elucidate the significance of this strain in the context of gut health and its potential implications for the host's physiological functions." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NIRM00000000.1 Bac0015224 Fusobacterium polymorphum strain KCOM 1274 (=ChDC F309) F309_53 "Fusobacterium polymorphum strain KCOM 1274 (=ChDC F309) F309_53 is a Gram-negative, rod-shaped bacterium that typically exists in pairs and is classified as a nonsporulating organism. This strain thrives in anaerobic conditions, reflecting its adaptation to environments devoid of oxygen, such as the gut of its host. It is a chemoheterotroph, utilizing organic compounds as both a carbon and energy source, which is characteristic of many gut-associated microbes that contribute to the complex dynamics of the intestinal microbiome.↵↵Optimal growth of F. polymorphum strain KCOM 1274 occurs at 37.0°C, which aligns with the physiological temperature of mammalian hosts, facilitating its role as a gut inhabitant. The presence of this bacterium in the host gut underscores its potential involvement in various metabolic processes, including the fermentation of dietary components and the modulation of gut health.↵↵This strain exemplifies the diverse microbial life within the intestinal ecosystem, where anaerobic bacteria play critical roles in digestion and nutrient absorption. The specific ecological niche occupied by F. polymorphum strain KCOM 1274 highlights the importance of understanding how such anaerobes interact with host physiology and the broader microbial community, potentially influencing health outcomes through their metabolic activities." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NIRO00000000.1 Bac0015225 Hymenobacter amundsenii strain CCM 8682 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter amundsenii 2006685 NIRR00000000.1 Bac0015226 Roseateles puraquae strain CCUG 52769 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles puraquae 431059 NISI00000000.1 Bac0015227 Sphingopyxis bauzanensis strain DSM 22271 "Sphingopyxis bauzanensis strain DSM 22271 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 5.0°C and requires aerobic conditions for its metabolic processes. This psychrophilic organism is likely adapted to cold environments, which may influence its biochemical pathways and ecological interactions. ↵↵The Gram-negative cell wall structure of S. bauzanensis implies a distinct permeability barrier, which could contribute to its survival and functionality in diverse habitats, particularly in cold aquatic ecosystems. The aerobic nature of this strain suggests a reliance on oxygen for energy production, which aligns with the metabolic capabilities typically observed in psychrophilic microorganisms.↵↵Understanding the physiological traits of Sphingopyxis bauzanensis may provide insights into the microbial dynamics within cold environments, particularly in biogeochemical cycles where aerobic degradation processes are essential. This strain could potentially play a role in the degradation of organic matter in polar or deep-sea ecosystems, highlighting the importance of psychrophilic bacteria in nutrient recycling and ecosystem health in low-temperature environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis bauzanensis Gram-negative rod aerobic 5 psychrophilic 651663 NISK00000000.1 Bac0015228 Nitrospira sp. UW-LDO-01 Bin_Nitrospira_4_final_99 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. UW-LDO-01 2004993 NIUT00000000.1 Bac0015229 Stenotrophomonas maltophilia strain 13146 "Stenotrophomonas maltophilia strain 13146 is a Gram-negative, rod-shaped bacterium known for its versatility in habitat, being found in multiple environments. This microbe is classified as an aerobic organism, necessitating oxygen for its metabolic processes. As a member of the genus Stenotrophomonas, it exhibits a range of biochemical capabilities that enable it to thrive in diverse ecological niches, including soil, water, and various human-made environments.↵↵The ability of S. maltophilia to adapt to multiple habitats highlights its ecological resilience and potential role in biogeochemical cycles. Its aerobic nature suggests a reliance on oxygen-rich environments, which may influence its interactions with other microbial communities. Given the organism's adaptability and presence in various habitats, it may contribute significantly to nutrient cycling and environmental processes where it resides.↵↵Overall, Stenotrophomonas maltophilia strain 13146 exemplifies the ecological versatility of this genus, suggesting that its metabolic characteristics may play a key role in its survival and functionality across different ecosystems. Further exploration of its ecological interactions may yield insights into its contributions to microbial diversity and functionality in the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 NIVS00000000.1 Bac0015230 Sphingopyxis sp. GW247-27LB Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. GW247-27LB 2012632 NIWD00000000.1 Bac0015231 Candidatus Methanobinarius endosymbioticus Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Candidatus Methanobinarius Candidatus Methanobinarius endosymbioticus 2006182 NIZT00000000.1 Bac0015232 Rhodopirellula bahusiensis strain SWK21 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula bahusiensis 2014065 NIZW00000000.1 Bac0015233 Xenorhabdus sp. KK7.4 Xekk_154 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus sp. KK7.4 1851572 NJAH00000000.1 Bac0015234 Pseudomonas nitroreducens strain DF05 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas nitroreducens 46680 NJBA00000000.1 Bac0015235 Wolbachia endosymbiont of Wuchereria bancrofti strain wWb Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Wuchereria bancrofti 96496 NJBR00000000.2 Bac0015236 Xenorhabdus sp. KJ12.1 Xekj_148 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus sp. KJ12.1 1851571 NJCW00000000.1 Bac0015237 Xenorhabdus kozodoii strain DSM 17907 Xkoz_140 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus kozodoii 351676 NJCX00000000.1 Bac0015238 Thermofilum sp. ex4484_82 Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum sp. ex4484_82 2012528 NJDJ00000000.1 Bac0015239 Thermofilum sp. ex4484_79 Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum sp. ex4484_79 2012527 NJDK00000000.1 Bac0015240 Candidatus Woesearchaeota archaeon ex4484_78 Nanobdellati Candidatus Woesearchaeota Candidatus Woesearchaeota archaeon ex4484_78 2012531 NJDL00000000.1 Bac0015241 Candidatus Aenigmarchaeota archaeon ex4484_56 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon ex4484_56 2012505 NJDQ00000000.1 Bac0015242 Desulfurococcales archaeon ex4484_42 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcales archaeon ex4484_42 2012520 NJDT00000000.1 Bac0015243 Thermoplasmatales archaeon ex4484_30 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Thermoplasmatales archaeon ex4484_30 2012522 NJDX00000000.1 Bac0015244 Candidatus Aenigmarchaeota archaeon ex4484_224 Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon ex4484_224 2012503 NJEA00000000.1 Bac0015245 Desulfurococcales archaeon ex4484_204 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcales archaeon ex4484_204 2012517 NJEF00000000.1 Bac0015246 Candidatus Altiarchaeales archaeon ex4484_2 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon ex4484_2 2012506 NJEG00000000.1 Bac0015247 Candidatus Bathyarchaeota archaeon ex4484_135 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon ex4484_135 2012509 NJEJ00000000.1 Bac0015248 Euryarchaeota archaeon ex4484_162 Methanobacteriati Methanobacteriota Euryarchaeota archaeon ex4484_162 1978125 NJEP00000000.1 Bac0015249 Halobacteriovorax sp. JY17 Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. JY17 2014617 NJER00000000.1 Bac0015250 Helicobacter pylori strain FDAARGOS_299 "Helicobacter pylori strain FDAARGOS_299 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the arrangement of cells as singles. This strain thrives optimally at 37.0°C, which aligns with the typical human body temperature, suggesting an adaptation for survival in host-associated environments. ↵↵H. pylori is well-known for its association with the gastric mucosa of humans, contributing to various gastric conditions. The microaerophilic nature of this strain indicates that it requires reduced oxygen levels for optimal growth, which reflects its ecological niche within the gastric environment where oxygen concentration is markedly lower than in atmospheric conditions. ↵↵The unique combination of its morphological traits and physiological requirements allows H. pylori strain FDAARGOS_299 to effectively colonize and persist in the host's stomach, potentially influencing the local microbial community dynamics. Understanding such adaptations can provide insights into the complex interactions between this bacterium and its host, as well as its potential roles in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NJFC00000000.2 Bac0015251 Mobiluncus mulieris strain FDAARGOS_303 "Mobiluncus mulieris strain FDAARGOS_303 is a Gram-negative bacterium characterized by its curved rod shape and strict anaerobic metabolism. This species is primarily found in the uterine and vaginal environments, suggesting a specialized adaptation to these distinct anaerobic habitats. ↵↵The presence of M. mulieris in the vaginal space indicates its potential role in the complex microbial communities that inhabit this region, which are crucial for maintaining reproductive health. Its anaerobic nature aligns with the low-oxygen conditions typically found in the vagina, where it may contribute to the overall microbial balance. ↵↵Insights into the ecological role of M. mulieris may help elucidate its interactions within the vaginal microbiome, particularly concerning its potential symbiotic relationships or competition with other microorganisms. Understanding these dynamics could provide valuable information on the maintenance of a healthy vaginal environment and the implications of microbial dysbiosis." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris negative Curved rod Yes 1 anaerobic uterus; vaginal; vaginal environment; vaginal space 2052 NJFD00000000.2 Bac0015252 Hafnia alvei "Hafnia alvei is a Gram-negative, rod-shaped bacterium that is primarily found in hot spring environments. This organism demonstrates facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor conditions. Such metabolic versatility is advantageous in fluctuating environments like hot springs, where oxygen availability can vary significantly due to thermal activity and microbial community dynamics.↵↵The structural characteristics of Hafnia alvei contribute to its adaptability; as a rod-shaped microbe, it may possess a higher surface area-to-volume ratio compared to coccoid forms, potentially enhancing nutrient uptake and metabolic efficiency. While Hafnia alvei is not widely recognized for any specific pathogenic traits, its presence in hot springs suggests a role in the complex microbial ecosystems that characterize these thermal habitats.↵↵Notably, the adaptability of Hafnia alvei to extreme thermal environments may provide insights into microbial survival strategies under stressful conditions. Such traits could be of interest in biotechnological applications, including the study of thermophilic enzymes and their roles in industrial processes. Understanding the ecological roles of Hafnia alvei in hot springs may also contribute to broader knowledge of microbial interactions and community structures in extreme environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia alvei Negative Rod Facultative anaerobe hot spring 569 NJFP00000000.2 Bac0015253 Caldifermentibacillus hisashii strain C4 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldifermentibacillus Caldifermentibacillus hisashii 996558 NJGA00000000.1 Bac0015254 Stenotrophomonas maltophilia strain DF07 "Stenotrophomonas maltophilia strain DF07 is a Gram-negative, rod-shaped bacterium that thrives in various habitats and exhibits aerobic metabolic capabilities. This strain is notable for its adaptability to multiple environments, which may include soil, water, and hospital settings. As an aerobe, S. maltophilia DF07 requires oxygen for growth, which underscores its potential role in biogeochemical cycles, particularly in oxygen-rich microenvironments.↵↵The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with other microorganisms and its resistance to certain antibiotics. The rod shape of S. maltophilia DF07 may confer advantages in motility and nutrient acquisition in diverse ecological niches.↵↵The ability of S. maltophilia to inhabit multiple environments suggests it may play a significant role in microbial communities, contributing to processes such as organic matter degradation and nutrient cycling. Furthermore, its presence in both natural and artificial ecosystems raises questions about its ecological relationships and potential applications in biotechnology. Understanding the specific roles and interactions of S. maltophilia DF07 within these communities could provide insights into its functional significance in microbial ecology and its utility in environmental monitoring or bioremediation efforts." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 NJGC00000000.1 Bac0015255 Bacillus sp. K2I17 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. K2I17 2014743 NJGF00000000.1 Bac0015256 Fusobacterium polymorphum strain KCOM 1232 (= ChDC F37) "Fusobacterium polymorphum strain KCOM 1232 (= ChDC F37) is a nonsporulating, Gram-negative bacterium characterized by its rod shape and the tendency to arrange in pairs. This strain thrives optimally at 37.0°C, indicating its adaptation to warm-blooded hosts, where it likely resides in the gut environment. As a chemoheterotroph, F. polymorphum strain KCOM 1232 utilizes organic compounds for energy, aligning with its anaerobic oxygen requirement which suggests a specialized metabolic capacity suited for the oxygen-depleted conditions of the host gut.↵↵The habitat of F. polymorphum strain KCOM 1232 in the gut underscores its potential role in the complex microbial ecosystem of the gastrointestinal tract. While specific interactions with host metabolism or health are not detailed in the provided traits, its presence in the gut microbiome is indicative of its involvement in the breakdown of dietary components or in maintaining microbial community stability. Furthermore, the paired arrangement of cells may reflect a specific strategy for colonization or interaction with other gut microbes, potentially influencing the dynamics of gut microbiota composition. The ecological role of this strain in the gut highlights the intricate relationships between host and microbial life, emphasizing the importance of anaerobic bacteria in digestive processes." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NJGI00000000.1 Bac0015257 Janthinobacterium sp. PC23-8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. PC23-8 2012679 NJGY00000000.1 Bac0015258 Cylindrospermopsis raciborskii S05 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Cylindrospermopsis Cylindrospermopsis raciborskii 2014879 NJHZ00000000.1 Bac0015259 Achromobacter sp. HZ28 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter sp. HZ28 2015171 NJIY00000000.1 Bac0015260 Bifidobacterium longum strain 239-2 C1258 "Bifidobacterium longum strain 239-2 C1258 is a Gram-positive, non-sporulating rod-shaped bacterium that typically exists in clusters, pairs, or as singles. This strain is an anaerobe, indicating its growth and metabolic processes occur in the absence of oxygen, which is consistent with its habitat as a host-associated microbe. The optimal growth temperature for Bifidobacterium longum strain 239-2 C1258 is around 37.0°C, aligning with the physiological conditions found in the intestines of warm-blooded hosts.↵↵Bifidobacterium longum is notable for its role in the human gut microbiota, where it is commonly associated with various health benefits, including the maintenance of gut homeostasis and modulation of the immune response. The presence of this strain in the gastrointestinal tract may contribute to the digestion of dietary fiber and the production of short-chain fatty acids, which are vital for gut health.↵↵The unique arrangement of Bifidobacterium longum strain 239-2 C1258 in clusters and pairs suggests a potential for cooperative behavior among cells, which may enhance its survival and functionality within the complex microbial communities of the host. This trait could facilitate interactions with other gut microbes, playing a crucial role in the overall dynamics of the gut microbiome and its influence on host health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 NJNZ00000000.1 Bac0015261 Bifidobacterium breve strain N6D12 C1090 "Bifidobacterium breve strain N6D12 C1090 is a Gram-positive, anaerobic bacterium commonly found in diverse habitats, including human breast milk and the gastrointestinal tracts of healthy newborns. This strain is notably a member of the infant gut microbiota, contributing to the microbial ecosystem of the infant intestine. Its presence in breast milk indicates its potential role in establishing beneficial gut flora during early development, which is crucial for the overall health and immune function of infants.↵↵As an anaerobic organism, B. breve N6D12 C1090 thrives in low-oxygen environments, which is characteristic of the gastrointestinal tract and aligns with its adaptation to colonize the human gut. The strain's ability to inhabit both breast milk and the intestines suggests a dynamic interaction between maternal and infant microbiomes, potentially influencing the infant's digestive health and immune responses.↵↵This strain's prevalence in the microbiota of healthy newborns underscores its significance in early microbial colonization and suggests that it may play a role in the development of a balanced gut microbiome. In addition, the presence of B. breve N6D12 C1090 in breast milk may provide essential prebiotics that support the growth of beneficial bacteria in infants, highlighting its importance in promoting gut health from the very beginning of life. Further research on this strain could elucidate its specific contributions to gut health and its potential applications in probiotic therapies." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 NJOA00000000.1 Bac0015262 Lactiplantibacillus plantarum subsp. plantarum strain SRCM101258 "Lactiplantibacillus plantarum subsp. plantarum strain SRCM101258 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 25.0 °C, indicating a preference for moderate conditions that may be found in various habitats.↵↵L. plantarum is known for its versatility and ability to adapt to diverse ecological niches, which is evidenced by its association with multiple habitats. This adaptability may contribute to its roles in fermentation processes and as a beneficial microbe in food production, particularly in the context of fermented dairy products and plant-based foods. ↵↵The unique arrangement of cells in chains may enhance its stability and functionality in various environments, potentially facilitating interactions with other microorganisms and the surrounding matrix. This characteristic could play a role in its ecological success in complex microbial communities, where cooperation and communication among species are essential for survival and metabolic efficiency. Overall, L. plantarum subsp. plantarum strain SRCM101258 exemplifies the dynamic nature of lactic acid bacteria and their significance in both natural ecosystems and human applications." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 NKCZ00000000.1 Bac0015263 Burkholderia sp. AU15512 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. AU15512 2015345 NKEX00000000.1 Bac0015264 Burkholderia sp. AU16741 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. AU16741 2015347 NKEZ00000000.1 Bac0015265 Burkholderia sp. AU6039 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. AU6039 2015344 NKFK00000000.1 Bac0015266 Burkholderia sp. HI2714 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. HI2714 2015359 NKFM00000000.1 Bac0015267 Burkholderia sp. HI2761 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. HI2761 2015360 NKFN00000000.1 Bac0015268 Bacillus pumilus strain 36R_ATNSAL "Bacillus pumilus strain 36R_ATNSAL is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in terrestrial habitats as an aerobic organism. This strain is characterized by its ability to produce spores, which are critical for its survival in various environmental conditions, allowing it to endure periods of nutrient scarcity and other stressors. ↵↵As an aerobe, Bacillus pumilus strain 36R_ATNSAL requires oxygen for its metabolic processes, which may influence its ecological niche and interactions within the soil ecosystem. The terrestrial habitat of this strain suggests a role in soil health, potentially contributing to nutrient cycling and the decomposition of organic matter through its metabolic activities.↵↵The sporulating nature of Bacillus pumilus strain 36R_ATNSAL, combined with its aerobic lifestyle, highlights its adaptability and resilience in fluctuating terrestrial environments. This adaptability may enable the strain to participate actively in soil microbial communities, where it could contribute to the overall biodiversity and functioning of these ecosystems. Further studies may elucidate the specific interactions and contributions of this strain within its habitat, enhancing our understanding of its ecological role in terrestrial environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 NKHG00000000.1 Bac0015269 Mycobacteroides abscessus subsp. bolletii strain 1189 "Mycobacteroides abscessus subsp. bolletii strain 1189 is a rod-shaped bacterium that has been isolated from chloraminated water environments. This strain exhibits unique morphological characteristics typical of mycobacterial species, contributing to its classification within the Mycobacteroides genus. The presence of this organism in chloraminated water indicates its potential resilience to environmental stressors, including disinfectants commonly used in water treatment processes. ↵↵Chloraminated water, known for its use in municipal water systems due to its stability and effectiveness at controlling microbial growth, can serve as a niche for certain bacteria, including Mycobacteroides abscessus subsp. bolletii strain 1189. The ability of this strain to thrive in such conditions suggests a specialized adaptation that may allow it to exploit resources unavailable to less resilient microorganisms. Investigating the metabolic pathways and resistance mechanisms of this strain could provide further insights into its ecological role and potential interactions within the microbial community of chloraminated water systems. Understanding these dynamics is essential for assessing the broader implications of Mycobacteroides species in water quality and public health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides abscessus Rod chloraminated water 36809 NKHI00000000.1 Bac0015270 Pseudomonas sp. PGPPP4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PGPPP4 2015556 NKID00000000.1 Bac0015271 Pseudomonas sp. PGPPP2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PGPPP2 2015554 NKIF00000000.1 Bac0015272 Pseudomonas sp. PGPPP1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PGPPP1 2015553 NKIG00000000.1 Bac0015273 Burkholderiales bacterium PBB6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium PBB6 2015568 NKIH00000000.1 Bac0015274 Burkholderiales bacterium PBB3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium PBB3 2015565 NKIK00000000.1 Bac0015275 Alphaproteobacteria bacterium PA4 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium PA4 2015572 NKIQ00000000.1 Bac0015276 Rhodobacteraceae bacterium PARR1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium PARR1 2015578 NKIT00000000.1 Bac0015277 Pseudorhodobacter sp. PARRP1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudorhodobacter Pseudorhodobacter sp. PARRP1 2015560 NKIU00000000.1 Bac0015278 Alphaproteobacteria bacterium PA1 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium PA1 2015569 NKJA00000000.1 Bac0015279 Cytophagaceae bacterium BCCC1 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Cytophagaceae bacterium BCCC1 2015573 NKJF00000000.1 Bac0015280 Lactobacillus crispatus strain RL05 RL05_446 "Lactobacillus crispatus strain RL05 (RL05_446) is a Gram-positive, non-sporulating bacterium characterized by its rod shape and tendency to form chains. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to warm-blooded hosts where it is typically found in association with biological tissues. As a facultative anaerobe, L. crispatus RL05 is capable of surviving in both aerobic and anaerobic environments, allowing it to inhabit diverse ecological niches within its host.↵↵Lactobacillus crispatus species are often recognized for their role in maintaining microbial balance in the host's microbiota, particularly in the gastrointestinal and urogenital tracts. The ability of strain RL05 to form chains could play a significant role in its colonization and persistence within these environments, as cellular arrangements can influence interactions with host tissues and other microorganisms. The host-associated habitat suggests that this strain may contribute to the overall health of its environment, potentially providing benefits such as the production of antimicrobial substances or the modulation of immune responses.↵↵Understanding the specific traits of L. crispatus strain RL05 enhances our comprehension of its ecological role and potential applications in probiotics or biotherapy, particularly in contexts where maintaining or restoring a healthy microbial balance is crucial for host well-being." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 NKLP00000000.1 Bac0015281 Bacillaceae bacterium SAOS 7 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillaceae bacterium SAOS 7 2015052 NKQE00000000.1 Bac0015282 Pseudomonas avellanae strain MAFF 212061 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas avellanae 46257 NKQU00000000.1 Bac0015283 Komagataeibacter sucrofermentans strain LMG 18788 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter sucrofermentans 1053551 NKUA00000000.1 Bac0015284 Amycolatopsis antarctica strain AU-G6 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis antarctica 1854586 NKYE00000000.1 Bac0015285 Actinobacillus seminis strain ATCC 15768 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus seminis 722 NLFK00000000.1 Bac0015286 Gallibacterium anatis strain 2PKA3 "Gallibacterium anatis strain 2PKA3 is a Gram-negative bacterium characterized by its unique cellular structure and biochemical properties. As a member of the Gallibacterium genus, this strain exhibits typical features associated with Gram-negative organisms, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. ↵↵The strain's Gram-negative classification is significant as it influences its interactions with the environment and host organisms, including potential resistance to certain antibiotics and the ability to evade immune responses. The structural characteristics of Gallibacterium anatis strain 2PKA3 may also contribute to its survival in various ecological niches, particularly in avian hosts.↵↵In addition to its structural traits, the ecological role of Gallibacterium anatis strain 2PKA3 may be further elucidated by examining its metabolic pathways and environmental adaptability, though such details are not available in the current dataset. The presence of this bacterium in avian species suggests a potential role in the microbiota of these hosts, possibly influencing their health and physiology. Understanding the traits of Gallibacterium anatis strain 2PKA3 can provide insights into the dynamics of microbial communities associated with birds, shedding light on the complex interactions between host organisms and their microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis negative 750 NLFM00000000.1 Bac0015287 Tamilnaduibacter salinus strain Mi-7 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Tamilnaduibacter Tamilnaduibacter salinus 1484056 NMPM00000000.1 Bac0015288 Siphonobacter sp. BAB-5385 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Siphonobacter Siphonobacter sp. BAB-5385 1864822 NMPS00000000.1 Bac0015289 Fischerella thermalis CCMEE 5319 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella thermalis 2019665 NMQD00000000.1 Bac0015290 Fischerella thermalis CCMEE 5318 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella thermalis 2019666 NMQE00000000.1 Bac0015291 Fischerella thermalis CCMEE 5330 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella thermalis 2019670 NMQI00000000.1 Bac0015292 Pseudomonas sp. IB20 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas gelidaquae 1702250 NMRE00000000.1 Bac0015293 Vibrio metoecus strain OYP9E10 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio metoecus 1481663 NMSH00000000.1 Bac0015294 Faecalibacterium prausnitzii strain CNCM I 4541 "Faecalibacterium prausnitzii strain CNCM I 4541 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph in various anaerobic habitats. This strain exhibits optimal growth at 37.0°C, indicating its adaptation to the warm environments typically found within the gastrointestinal tracts of mammals. F. prausnitzii is well-regarded for its potential role in maintaining gut health and contributing to the stability of the intestinal microbiome. ↵↵As an anaerobe, this microorganism relies on environments devoid of oxygen, which aligns with its natural habitat within the human gut, where it helps in the fermentation of dietary fibers and other substrates. The metabolic activities of F. prausnitzii are believed to produce short-chain fatty acids, which are beneficial for intestinal health and may play a role in modulating immune responses. ↵↵Interestingly, the presence of F. prausnitzii has been inversely correlated with various inflammatory bowel diseases, suggesting that this microbe may contribute to a balanced gut microbiome and overall homeostasis. Further studies are warranted to explore its specific interactions within the gut ecosystem and its potential implications for human health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium langellae Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 3435293 NMTR00000000.1 Bac0015295 Faecalibacterium prausnitzii strain CNCM I 4546 "Faecalibacterium prausnitzii strain CNCM I 4546 is a Gram-positive, nonsporulating rod-shaped bacterium that acts as a chemoheterotroph, deriving its energy from organic compounds. This strain thrives optimally at a temperature of 37.0°C, suggesting its adaptation to warm-blooded hosts. As an anaerobe, F. prausnitzii strain CNCM I 4546 is capable of surviving and metabolizing in oxygen-deprived environments, which is characteristic of the gut microbiota where it is commonly found.↵↵The habitat of F. prausnitzii encompasses multiple environments, although it is predominantly associated with the gastrointestinal tract of humans and other mammals. Its presence in the gut is indicative of its potential role in maintaining intestinal health and stability, contributing to the complex microbial community.↵↵Notably, F. prausnitzii has garnered interest due to its association with beneficial effects on gut health, particularly in maintaining a balanced microbiome. Its ability to thrive in anaerobic conditions and utilize a range of organic substrates underscores its ecological versatility and importance within the digestive ecosystem. Further investigation into this strain could illuminate its specific interactions with host immune responses and its potential contributions to gut homeostasis." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTV00000000.1 Bac0015296 Faecalibacterium prausnitzii strain CNCM I 4573 "Faecalibacterium prausnitzii strain CNCM I 4573 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism, utilizing a variety of organic compounds as energy sources. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions typically found in the human gut. As an anaerobic organism, F. prausnitzii strain CNCM I 4573 is adapted to environments devoid of oxygen, which is characteristic of its habitat within the gastrointestinal tract of mammals.↵↵The ecological significance of F. prausnitzii lies in its association with gut health, where it is implicated in maintaining intestinal homeostasis. Its ability to flourish in diverse habitats suggests a versatile ecological role, potentially contributing to the metabolic processes within microbial communities. The presence of this strain in the gut microbiota has garnered attention for its potential beneficial effects, though the full extent of its physiological roles and interactions with other microbial taxa remains an area for further investigation. Understanding the dynamics of F. prausnitzii within the gut environment could provide insights into its contribution to metabolic health and its response to dysbiosis." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTW00000000.1 Bac0015297 Faecalibacterium prausnitzii strain CNCM I 4575 "Faecalibacterium prausnitzii strain CNCM I 4575 is a Gram-positive, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph and thrives optimally at a temperature of 37.0°C. This strain is strictly anaerobic, indicating that it does not require oxygen for growth and may even be inhibited by its presence. ↵↵F. prausnitzii is known to inhabit various environments, with its predominant habitat being the human gastrointestinal tract, where it plays a significant role in maintaining gut health. As an anaerobe, it contributes to the complex microbial ecosystem within the gut, participating in fermentation processes and producing short-chain fatty acids that are beneficial for intestinal health. ↵↵The presence of F. prausnitzii is often associated with a balanced gut microbiota, and its levels may fluctuate in response to changes in diet or health status. This strain may be particularly important in the context of gut dysbiosis, as it is thought to exert anti-inflammatory effects. ↵↵The unique ecological insight about F. prausnitzii strain CNCM I 4575 lies in its potential role as a keystone species in the gut microbiome; its abundance may be critical for maintaining the stability and functionality of the microbial community, thereby influencing overall host health and disease resistance." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTY00000000.1 Bac0015298 Faecalibacterium prausnitzii strain CNCM I 4644 "Faecalibacterium prausnitzii strain CNCM I 4644 is a Gram-positive, nonsporulating rod that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain is recognized as a chemoheterotroph, utilizing organic compounds as its energy source. ↵↵F. prausnitzii is typically found in various habitats, with a significant presence in the human gut microbiome, where it contributes to the complex interplay of microbial communities. Its ability to thrive in anaerobic conditions highlights its adaptation to the intestinal environment, where oxygen levels are minimal. The metabolic processes of F. prausnitzii may play a role in maintaining gut health, potentially influencing the production of short-chain fatty acids, which are important for colonic health and may have systemic effects.↵↵Overall, Faecalibacterium prausnitzii strain CNCM I 4644 exemplifies the diverse roles of anaerobic microbes in human health, particularly in the context of gut microbiota dynamics and their contributions to host homeostasis." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NMTZ00000000.1 Bac0015299 Pyrobaculum aerophilum strain YKB32 "Pyrobaculum aerophilum strain YKB32 is a rod-shaped microbe that thrives in aquatic environments, exhibiting remarkable adaptability to both aerobic and anaerobic conditions. This extremophilic archaeon is optimally active at a temperature of 100.0°C, reflecting its capacity to inhabit high-temperature niches often found in hydrothermal systems. ↵↵As an aerobe and anaerobe, P. aerophilum strain YKB32 demonstrates metabolic versatility, allowing it to utilize various substrates for energy under different oxygen availability scenarios. Its ability to survive and flourish in extreme conditions may provide insights into the biochemical pathways employed by thermophilic organisms, particularly in relation to energy metabolism and adaptation mechanisms in fluctuating environments.↵↵This strain's unique physiological traits may also contribute to biogeochemical cycles, particularly in geothermal areas where thermal gradients create diverse ecological niches. Understanding P. aerophilum strain YKB32 could enhance our knowledge of microbial life in extreme habitats and its potential applications in biotechnology, such as bioenergy production or bioremediation in high-temperature environments." Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum NA Rod No 1 1 Aerobe; anaerobe 100 Hyperthermophilic Aquatic 13773 NMUF00000000.1 Bac0015300 Amycolatopsis vastitatis strain H5 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis vastitatis 1905142 NMUL00000000.1 Bac0015301 Zobellella denitrificans strain ZD1 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Zobellella Zobellella denitrificans 347534 NMUO00000000.1 Bac0015302 Paenibacillus herberti strain R33 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus herberti 1619309 NMUQ00000000.1 Bac0015303 Parenemella sanctibonifatiensis strain NML 160184 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Parenemella Parenemella sanctibonifatiensis 2016505 NMVI00000000.1 Bac0015304 Enemella evansiae strain NML 030167 NML030167_9 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Enemella Enemella evansiae 2016499 NMVO00000000.1 Bac0015305 Enemella dayhoffiae strain NML 130396 NML130396_9 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Enemella Enemella dayhoffiae 2016507 NMVQ00000000.1 Bac0015306 Streptomyces sp. CB01635 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB01635 2020326 NNBL00000000.1 Bac0015307 Streptomyces sp. CB02613 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CB02613 2020328 NNBN00000000.1 Bac0015308 Kitasatospora sp. CB02891 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. CB02891 2020329 NNBO00000000.1 Bac0015309 Pseudomonas fluorescens strain SC1 "Pseudomonas fluorescens strain SC1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is an aerobic heterotroph, utilizing organic compounds as its energy source. It thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵Pseudomonas fluorescens is known for its metabolic versatility and ability to inhabit a variety of environments, which may include soil, water, and plant surfaces. The strain's adaptability to multiple habitats suggests a potential role in biogeochemical cycling and interactions with various microbial communities. ↵↵The aerobic nature of P. fluorescens SC1 further implies its involvement in aerobic processes, which can include the degradation of organic pollutants, making it a candidate for bioremediation applications. Additionally, its capacity to exist as single cells may enhance its adaptability and survival in fluctuating environments, allowing it to respond effectively to changes in nutrient availability and competition with other microorganisms.↵↵Overall, Pseudomonas fluorescens strain SC1 exemplifies the ecological flexibility and metabolic diversity characteristic of the Pseudomonas genus, potentially contributing to both environmental sustainability and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NNBS00000000.1 Bac0015310 Streptococcus pneumoniae strain 8227-15B "Streptococcus pneumoniae strain 8227-15B is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its habitat. Streptococcus pneumoniae, as a species, is known to inhabit multiple environments, suggesting a versatile ecological role that may include interactions with various host organisms or adaptation to different niches.↵↵The combination of its Gram-positive nature and typical cocci morphology places this strain within the broader context of streptococcal species, which are often associated with diverse ecological settings. The ability to grow in both aerobic and anaerobic conditions may reflect adaptations that enhance its survival in fluctuating environments, potentially contributing to its resilience in various habitats. This adaptability may also facilitate its interactions within microbial communities, where it could play a role in nutrient cycling or influence the dynamics of cohabiting microorganisms. Such traits underscore the ecological significance of Streptococcus pneumoniae strain 8227-15B and highlight the need for further exploration of its environmental interactions and implications in microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 NNBW00000000.1 Bac0015311 Brucella thiophenivorans strain DSM 7216 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella thiophenivorans 571255 NNRJ00000000.1 Bac0015312 Brucella grignonensis strain OgA9a Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella grignonensis 94627 NNRL00000000.1 Bac0015313 Bifidobacteriaceae bacterium NR017 C1182 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium NR017 2021361 NNRZ00000000.1 Bac0015314 Ruminococcus bromii strain ATCC 27255 "Ruminococcus bromii strain ATCC 27255 is a Gram-positive, cocci-shaped anaerobic bacterium predominantly found in feces and associated with the rectal mucosa of hosts. This strain is part of the diverse microbiota inhabiting the gastrointestinal tract, where it plays a significant role in the fermentation of complex carbohydrates. ↵↵As an anaerobe, R. bromii thrives in oxygen-depleted environments, which is characteristic of the intestinal lumen. The presence of this bacterium in fecal samples suggests its adaptation to the gut environment, where it may contribute to the breakdown of dietary fibers, thus facilitating nutrient absorption and influencing the overall metabolic health of the host. ↵↵Ruminococcus bromii is particularly notable for its ability to degrade resistant starches, which are otherwise indigestible by human enzymes. This capability not only highlights its potential role in dietary fermentation but also underscores its significance in shaping the gut microbiome's composition and functionality. Understanding the specific interactions and contributions of R. bromii within the complex ecosystem of the gut may provide insights into its role in human health and disease, particularly in relation to dietary habits and gastrointestinal function." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bromii Positive Cocci Anaerobe feces; rectal mucosa 40518 NNSR00000000.1 Bac0015315 Acidovorax kalamii strain KNDSW-TSA6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax kalamii 2004485 NOIG00000000.1 Bac0015316 Thauera propionica strain KNDSS-Mac4 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Thauera Thauera propionica 2019431 NOIH00000000.1 Bac0015317 Methanosaeta sp. NSM2 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. NSM2 1917473 NOLD00000000.1 Bac0015318 Methanosaeta sp. ASO1 Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. ASO1 1917474 NOLE00000000.1 Bac0015319 Nostoc sp. 'Peltigera membranacea cyanobiont' 213 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. 'Peltigera membranacea cyanobiont' 213 2014530 NOLI00000000.1 Bac0015320 Nostoc sp. 'Peltigera membranacea cyanobiont' 210A Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. 'Peltigera membranacea cyanobiont' 210A 2014529 NOLJ00000000.1 Bac0015321 Nostoc sp. 'Peltigera membranacea cyanobiont' 232 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. 'Peltigera membranacea cyanobiont' 232 2014531 NOLK00000000.1 Bac0015322 Faecalibacterium prausnitzii strain AHMP21 "Faecalibacterium prausnitzii strain AHMP21 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This strain is optimally active at a temperature of 37.0°C, aligning with the physiological conditions of the human gut, where it is commonly found. F. prausnitzii is known to inhabit a variety of habitats, although its predominant ecological niche is likely within the gastrointestinal tract of humans and other mammals.↵↵As a member of the gut microbiota, F. prausnitzii is thought to play a significant role in maintaining intestinal health, contributing to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for host metabolism and immune regulation. The presence of strain AHMP21 in various environments suggests its adaptability and potential significance in different ecological contexts, particularly in the maintenance of gut homeostasis. ↵↵In summary, F. prausnitzii strain AHMP21 exemplifies the complex interactions within microbial communities and underscores the importance of anaerobic, chemoheterotrophic bacteria in supporting gut health and function. Further investigation into its ecological roles may yield important insights into its contributions to human health and disease." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NOUV00000000.1 Bac0015323 Cutibacterium acnes strain P15-089 "Cutibacterium acnes strain P15-089 is a Gram-positive, non-sporulating rod that thrives in anaerobic environments, with an optimal growth temperature of 37.0 °C. This strain is primarily associated with host environments, suggesting a specific adaptation to living in conjunction with host organisms. ↵↵As a member of the Cutibacterium genus, C. acnes, including strain P15-089, is known to inhabit the human skin and sebaceous glands, where it plays a role in the microbial community of the skin microbiome. The anaerobic nature of this strain indicates its preference for low-oxygen conditions, which is consistent with its habitat in the oily regions of the skin where oxygen availability is limited. ↵↵Understanding the traits of C. acnes strain P15-089 may provide insights into its potential roles in skin health and disease, particularly in relation to its interactions within the skin microbiome. Its nonsporulating characteristic suggests a reliance on stable environments provided by the host, which may influence its ecological niche and functional contributions to the skin's microbial ecosystem. This adaptation may also highlight the delicate balance that exists within host-associated microbial communities, where such microbes can affect skin homeostasis and potentially contribute to various skin conditions." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 NOWJ00000000.1 Bac0015324 Priestia aryabhattai strain PHB10 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia aryabhattai NOXE00000000.1 Bac0015325 Novacetimonas pomaceti strain T5K1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Novacetimonas Novacetimonas pomaceti 2021998 NOXG00000000.1 Bac0015326 Elstera cyanobacteriorum strain TH019 "Elstera cyanobacteriorum strain TH019 is a Gram-negative, rod-shaped cyanobacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This strain exhibits the characteristic features of cyanobacteria, including the ability to perform photosynthesis, which is integral to its role in aquatic ecosystems. The aerobic nature of strain TH019 suggests it is adapted to environments with abundant oxygen, possibly indicating a preference for shallow, well-illuminated waters where light penetration is sufficient for photosynthetic activity.↵↵The rod shape of Elstera cyanobacteriorum strain TH019 may confer advantages in nutrient uptake and motility within its aquatic habitat. Furthermore, its optimal growth temperature of 29.0°C implies a potential adaptation to warm environments, which could influence its distribution and ecological interactions. Understanding the specific environmental conditions that favor this strain may provide insights into its role in nutrient cycling and primary production within its ecosystem.↵↵Given that cyanobacteria are known contributors to both oxygen production and the formation of microbial mats, the presence of Elstera cyanobacteriorum strain TH019 may have significant implications for community dynamics in its native habitat. Its adaptability to aerobic conditions and specific thermal preferences underscore the potential for this organism to influence the ecological balance within aquatic systems and contribute to the overall health of these environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Elstera Elstera cyanobacteriorum Gram-negative rod motile aerobic 29 mesophilic 2022747 NOXS00000000.1 Bac0015327 Niveispirillum lacus strain 1-14 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Niveispirillum Niveispirillum lacus 1981099 NOXU00000000.1 Bac0015328 Flavobacterium aurantiibacter strain TH167 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aurantiibacter 2023067 NOXX00000000.1 Bac0015329 Rhodococcus sp. 06-412-2C RS1E7_31 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 06-412-2C 2022487 NOYG00000000.1 Bac0015330 Rhodococcus sp. 06-235-1A RS1H2_22 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 06-235-1A 2022508 NOYI00000000.1 Bac0015331 Rhodococcus sp. 05-340-1 RS1G9_25 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 05-340-1 2022505 NOYV00000000.1 Bac0015332 Rhodococcus sp. 05-2255-1e RS1F7_21 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 05-2255-1e 2022495 NOZE00000000.1 Bac0015333 Virgibacillus sp. 7505 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus sp. 7505 2022548 NPBF00000000.1 Bac0015334 Paenibacillus sp. 7516 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 7516 2022549 NPBI00000000.1 Bac0015335 Paenibacillus sp. 7523-1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 7523-1 2022550 NPBR00000000.1 Bac0015336 Bacillus siamensis strain 7551 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus siamensis 659243 NPCI00000000.1 Bac0015337 Bacillus sp. 7788 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 7788 2021692 NPDC00000000.1 Bac0015338 Bacillus sp. 7884-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 7884-1 2021693 NPDD00000000.1 Bac0015339 Bacillus sp. 7894-2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 7894-2 2021695 NPDG00000000.1 Bac0015340 Leptospira brenneri strain JW2-C-A2 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira brenneri 2023182 NPDQ00000000.1 Bac0015341 Leptospira saintgironsiae strain FH4-C-A2 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira saintgironsiae 2023183 NPDR00000000.1 Bac0015342 Leptospira wolffii strain FH2-C-A2 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira wolffii 409998 NPDT00000000.1 Bac0015343 Leptospira adleri strain FH2-B-C1 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira adleri 2023186 NPDV00000000.1 Bac0015344 Leptospira harrisiae strain FH2-B-A1 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira harrisiae 2023189 NPDX00000000.1 Bac0015345 Leptospira neocaledonica strain ES4-C-A1 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira neocaledonica 2023192 NPEA00000000.1 Bac0015346 Leptospira ellisii strain ATI7-C-A3 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira ellisii 2023197 NPEH00000000.1 Bac0015347 Leptospira sp. mixed culture ATI2-C-A1 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira sp. mixed culture ATI2-C-A1 2813349 NPEK00000000.1 Bac0015348 Rhodoplanes serenus strain DSM 19946 "Rhodoplanes serenus strain DSM 19946 is a Gram-negative, rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 37.0°C. As a member of the genus Rhodoplanes, this strain is characterized by its ability to utilize light for energy through a process known as anoxygenic photosynthesis, a trait typical of many phototrophic bacteria. ↵↵The rod shape of R. serenus allows for efficient nutrient uptake and motility, which may contribute to its adaptability in various anaerobic environments. The optimal growth temperature of 37.0°C suggests that this strain may inhabit environments that are warm, possibly including those associated with decaying organic matter or other anaerobic niches where temperature stability is maintained.↵↵The strictly anaerobic requirement of R. serenus indicates that it likely plays a role in the microbial communities of zones where oxygen is depleted, contributing to the biogeochemical cycling of elements such as carbon and sulfur. This ecological niche is critical for understanding the dynamics of microbial interactions in anaerobic environments, where such bacteria can influence the degradation of organic compounds and the overall health of their ecosystems. Further investigation into the metabolic pathways of R. serenus may reveal insights into its potential applications in bioremediation or bioenergy production in anaerobic systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodoplanes Rhodoplanes serenus Gram-negative rod anaerobic 37 mesophilic 200615 NPEW00000000.1 Bac0015349 Salinicoccus roseus strain BU-1 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Salinicoccus Salinicoccus roseus 45670 NPEZ00000000.1 Bac0015350 Marinococcus halophilus strain KCTC 2843 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Marinococcus Marinococcus halophilus 1371 NPFA00000000.1 Bac0015351 Rhodococcus sp. 14-2470-1a RS1B8_43 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. 14-2470-1a 2023150 NPFZ00000000.1 Bac0015352 Photobacterium carnosum strain TMW 2.2021 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium carnosum 2023717 NPIB00000000.1 Bac0015353 Streptomyces sp. FBKL.4005 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. FBKL.4005 2015515 NPKF00000000.1 Bac0015354 Mesorhizobium mediterraneum strain USDA 3392 C658 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium mediterraneum 43617 NPKI00000000.1 Bac0015355 Mesorhizobium temperatum strain SDW018 C981 "Mesorhizobium temperatum strain SDW018 C981 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain is characterized by its ability to engage in symbiotic relationships, particularly with leguminous plants, facilitating nitrogen fixation, which is beneficial for plant growth and soil health. The aerobic nature of M. temperatum SDW018 C981 suggests it requires oxygen for its metabolic processes, a factor that may influence its habitat selection and interactions within the soil microbiome.↵↵As a non-spore-forming organism, M. temperatum SDW018 C981 relies on other survival strategies to withstand environmental stresses, such as the production of exopolysaccharides or other protective biofilm components. Understanding the traits of this strain can provide insights into its role within agricultural ecosystems, particularly in enhancing soil fertility and promoting sustainable agricultural practices. Given its specific adaptations, M. temperatum SDW018 C981 may serve as an important model for studying the mechanisms of symbiosis and nitrogen fixation in Gram-negative bacteria, potentially contributing to the development of more effective biofertilizers." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium temperatum Gram-negative rod aerobic non-spore-forming 241416 NPKJ00000000.1 Bac0015356 Microbacterium sp. Yaish 1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Yaish 1 2025014 NPMR00000000.1 Bac0015357 Virgibacillus profundi strain P3-H5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus profundi 2024555 NPOA00000000.1 Bac0015358 Bifidobacterium sp. wkB338 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. wkB338 2025114 NPOR00000000.1 Bac0015359 Escherichia coli strain ECCTRPRTH03 "Escherichia coli strain ECCTRPRTH03 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which is consistent with the physiological temperature of its host-associated habitat. As a facultative anaerobe, E. coli strain ECCTRPRTH03 possesses the ability to grow in both aerobic and anaerobic environments, enabling it to adapt to varying oxygen levels within its ecological niche.↵↵The host-associated nature of this strain suggests a potential symbiotic relationship with the host organism, where it may contribute to various metabolic processes or nutrient acquisition. Understanding the specific interactions between E. coli strain ECCTRPRTH03 and its host could provide insights into its role in maintaining host health or its involvement in microbiota dynamics. Further exploration of its ecological role may reveal important functions in nutrient cycling or metabolic pathways that are significant in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NQAI00000000.2 Bac0015360 Escherichia coli strain ECSW+04 "Escherichia coli strain ECSW+04 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is facultatively anaerobic, indicating its ability to thrive in both aerobic and anaerobic environments, which is a characteristic feature of many E. coli strains. The optimal growth temperature for ECSW+04 is approximately 37.0 degrees Celsius, aligning with the typical physiological conditions of the mammalian host environment in which it is often found.↵↵E. coli strains, including ECSW+04, are commonly associated with the intestines of warm-blooded animals, suggesting a host-associated habitat. This association underscores the bacterium's adaptability and potential role in various biological processes within the host, such as nutrient absorption and gut microbiota composition. The ability to exist in pairs and as single cells may provide advantages in colonization and survival within the dynamic environment of the gastrointestinal tract.↵↵Understanding the traits of E. coli strain ECSW+04 enhances our knowledge of its ecological niche and potential interactions with the host microbiome. The facultative anaerobic nature of this strain may contribute to its survival strategies in varying oxygen conditions within the host, illustrating the bacterium's flexibility and resilience in diverse environmental contexts. This adaptability could also provide insights into the role of E. coli in maintaining gut health and influencing host metabolism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NQBT00000000.1 Bac0015361 Shigella boydii strain ECH+23 "Shigella boydii strain ECH+23 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its capability to survive in both aerobic and anaerobic environments, which may provide it with a versatile metabolic advantage in host-associated habitats. As a chemoorganotroph, S. boydii strain ECH+23 utilizes organic compounds as its primary energy source, suggesting a reliance on host-derived nutrients for growth and sustenance.↵↵The optimal growth temperature for this strain is approximately 37.0°C, which aligns with the typical body temperature of many mammalian hosts, potentially facilitating its adaptation to the host environment. The specific association with hosts underscores the bacterium's ecological niche, where it likely interacts with the host's microbiome and immune system.↵↵Understanding the traits of S. boydii strain ECH+23 can provide insights into its ecological role within the gut and its potential interactions with other microbial communities. This strain's ability to thrive in host-associated environments may reflect an evolutionary adaptation that allows it to exploit host resources effectively, highlighting the dynamic relationship between pathogens and their hosts in maintaining microbial diversity and ecological balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella boydii Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 621 NQDL00000000.1 Bac0015362 Terribacillus sp. 7520-G Bacillati Bacillota Bacilli Caryophanales Bacillaceae Terribacillus Terribacillus sp. 7520-G 2025389 NQFP00000000.1 Bac0015363 Oceanimonas baumannii strain ATCC 700832 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Oceanimonas Oceanimonas baumannii 129578 NQJF00000000.1 Bac0015364 Pseudomonas fragi strain F1815 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fragi 296 NQKO00000000.1 Bac0015365 Pseudomonas fragi strain F1801 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fragi 296 NQKQ00000000.1 Bac0015366 Pseudomonas fragi strain F1794 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fragi 296 NQKR00000000.1 Bac0015367 Pseudomonas fragi strain F1792 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fragi 296 NQKT00000000.1 Bac0015368 Paenibacillus sp. 7541 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. 7541 2026236 NQLZ00000000.1 Bac0015369 Pusillimonas sp. NJUB218 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pusillimonas Pusillimonas sp. NJUB218 2023230 NQMK00000000.1 Bac0015370 Aeromonas sobria strain TM18 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sobria 646 NQMM00000000.1 Bac0015371 Gordonia polyisoprenivorans strain herm_1 000001F Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia polyisoprenivorans 84595 NQOE00000000.1 Bac0015372 Bifidobacteriaceae bacterium NR047 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella kenyensis 2026100 NQOH00000000.2 Bac0015373 Bifidobacteriaceae bacterium NR026 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium NR026 2026098 NQOL00000000.1 Bac0015374 Bifidobacteriaceae bacterium VN002 C1941 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium VN002 2026097 NQOM00000000.1 Bac0015375 Bifidobacteriaceae bacterium WP022 C5821 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium WP022 2026096 NQON00000000.1 Bac0015376 Bifidobacteriaceae bacterium WP021 C2130 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium WP021 2026095 NQOO00000000.1 Bac0015377 Bifidobacteriaceae bacterium NR021 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium NR021 2026094 NQOP00000000.1 Bac0015378 Bifidobacteriaceae bacterium GH005 C511 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacteriaceae bacterium GH005 2026092 NQOR00000000.1 Bac0015379 Megasphaera sp. ASD88 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera sp. ASD88 2027407 NQXW00000000.1 Bac0015380 Priestia filamentosa strain PK5_39 untig_4_quiver Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia filamentosa 1402861 NQYF00000000.1 Bac0015381 Neopusillimonas maritima strain L52-1-41 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Neopusillimonas Neopusillimonas maritima 2026239 NQYH00000000.1 Bac0015382 Dyella sp. AD56 DyAD56_58 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella sp. AD56 1528744 NRDP00000000.1 Bac0015383 Janthinobacterium sp. AD80 JaAD80_394 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. AD80 1528773 NRDQ00000000.1 Bac0015384 Arcobacter suis strain CECT7833 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter suis 1278212 NREO00000000.1 Bac0015385 Arcobacter venerupis strain CECT7836 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter venerupis 1054033 NREP00000000.1 Bac0015386 Brevibacterium aurantiacum strain 900_6 SAMN07141153.164 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 NRGO00000000.1 Bac0015387 Brachybacterium alimentarium strain 341_9 SAMN07141157.193 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium alimentarium aerobic 29 mesophilic 47845 NRGR00000000.1 Bac0015388 Halomonas sp. JB37 SAMN07141169.12 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. JB37 2024405 NRGW00000000.1 Bac0015389 Corynebacterium striatum strain 2237 "Corynebacterium striatum strain 2237 is a Gram-positive, facultative anaerobic bacterium. This strain exhibits the characteristic pleomorphic morphology typical of the Corynebacterium genus, which includes a range of rod-shaped forms. As a facultative anaerobe, C. striatum strain 2237 can grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions. This metabolic versatility may contribute to its ability to inhabit diverse niches within microbial communities.↵↵In terms of growth conditions, the strain's Gram-positive nature suggests a thick peptidoglycan layer in its cell wall, which may provide it with structural resilience and influence its interactions with other microorganisms. While specific pathogenicity traits for this strain have not been established, the Corynebacterium genus includes species known to colonize various environments, including human skin and mucosal surfaces, indicating potential roles in commensal relationships or opportunistic infections.↵↵The ecological significance of C. striatum strain 2237 may be further elucidated by its ability to maintain viability and metabolic activity under both aerobic and anaerobic conditions, potentially facilitating its survival and proliferation in fluctuating environments. This adaptability could position the strain as a key player in the microbial dynamics of its habitat, contributing to nutrient cycling or competition with other microbial taxa." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium striatum Positive Facultative anaerobe 43770 NRIM00000000.1 Bac0015390 Vibrio sp. V1B V1B_115 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. V1B 2047825 NRQQ00000000.1 Bac0015391 Bacillus toyonensis strain TYU3 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NRSQ00000000.1 Bac0015392 Photorhabdus sp. S10-54 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus sp. S10-54 2029684 NSCJ00000000.1 Bac0015393 Photorhabdus sp. S9-53 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus sp. S9-53 2029683 NSCK00000000.1 Bac0015394 Photorhabdus bodei strain LJ24-63 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus bodei 2029681 NSCM00000000.1 Bac0015395 Photorhabdus sp. HUG-39 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus sp. HUG-39 2029680 NSCN00000000.1 Bac0015396 Pseudoalteromonas sp. HM-SA03 C4403 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. HM-SA03 2029678 NSDG00000000.1 Bac0015397 Bacillus sp. 7705b Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 7705b 2028568 NSDH00000000.1 Bac0015398 Capnocytophaga canis strain 17-158 61 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga canis microaerophile 1848903 NSDI00000000.1 Bac0015399 Rhodococcus sp. ACPA4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. ACPA4 2028571 NSDY00000000.1 Bac0015400 Mycobacterium avium strain FLAC0165 "Mycobacterium avium strain FLAC0165 is a Gram-positive, rod-shaped bacterium that typically exists as single cells and is classified as a microaerophile, indicating its preference for low-oxygen environments. This strain exhibits optimal growth at 37.0 °C, aligning with the physiological temperature of many mammalian hosts, which suggests a strong association with host-associated habitats. As a chemoorganotroph, M. avium strain FLAC0165 relies on organic compounds for energy, which underscores its adaptability to environments rich in organic material, such as those found within host organisms.↵↵The microaerophilic nature of this strain may influence its metabolic pathways and interaction with host immune responses, potentially allowing it to thrive in niches that are less accessible to strictly aerobic or anaerobic competitors. The ability to survive in low-oxygen conditions is particularly relevant in the context of its natural habitats, where oxygen levels can vary significantly. This adaptability highlights the ecological versatility of M. avium strain FLAC0165, making it a notable example of microorganisms that have evolved to occupy specialized niches within host-associated environments, where they can engage in complex interactions with their hosts and the surrounding microbiota." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1764 NSFD00000000.1 Bac0015401 Mesorhizobium sp. WSM3864 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. WSM3864 2029404 NSGD00000000.1 Bac0015402 Kocuria sp. WRN011 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. WRN011 2029858 NSGI00000000.1 Bac0015403 Corynebacterium sp. NML 150383 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. NML 150383 2029400 NSGK00000000.1 Bac0015404 Streptomyces sp. Ag82_O1-15 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ag82_O1-15 1938855 NSGZ00000000.1 Bac0015405 Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 1206980 NSHF00000000.1 Bac0015406 Alcaligenaceae bacterium Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenaceae bacterium 2021368 NSIQ00000000.1 Bac0015407 Halovibrio salipaludis strain YL5-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halovibrio Halovibrio salipaludis 2032626 NSKD00000000.1 Bac0015408 Kocuria sp. WN036 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. WN036 2032628 NSKF00000000.1 Bac0015409 Sphingomonas lenta strain 1PNM-20 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas lenta 1141887 NSLI00000000.1 Bac0015410 Prevotella intermedia strain WW2834 "Prevotella intermedia strain WW2834 is a Gram-negative, rod-shaped anaerobic bacterium commonly found in various ecological niches, including the gingival sulci, gut, oral cavity, rumen, and urogenital tract. This strain is particularly notable for its presence in both subgingival and supragingival dental biofilms and subgingival plaque, reflecting its potential role in oral health and disease dynamics. ↵↵As an anaerobe, Prevotella intermedia strain WW2834 thrives in low-oxygen environments, which is typical of its habitats where oxygen levels are limited. The bacterium's ability to inhabit diverse anaerobic environments suggests that it may play a significant role in the microbial ecology of these sites, participating in complex interactions with other microbial species and contributing to the overall metabolic processes. ↵↵The presence of P. intermedia in the oral cavity and its association with dental biofilms indicate its potential involvement in the maintenance of oral microbiota balance, while also highlighting the necessity for further research into how this strain and others within the Prevotella genus may influence health outcomes in both the oral and gut environments. Understanding the ecological roles of P. intermedia could provide valuable insights into microbial community dynamics and the potential implications for host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NSLY00000000.1 Bac0015411 Klebsiella pneumoniae strain WBB417 "Klebsiella pneumoniae strain WBB417 is a Gram-negative, rod-shaped bacterium that typically appears in chains, pairs, or as single cells. This strain does not undergo sporulation and is classified as a chemoheterotroph, deriving its energy from organic compounds. It thrives optimally at a temperature of 37.0 °C, which aligns with its habitat, as it is host-associated, indicating a potential relationship with living organisms. As a facultative anaerobe, WBB417 can grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within host environments.↵↵This flexibility in oxygen utilization and its host-associated lifestyle suggest that Klebsiella pneumoniae strain WBB417 may play a complex role in its ecological niche, potentially influencing host metabolism and microbial community dynamics. Further investigation into this strain could provide insights into its interactions within host-associated microbiomes, shedding light on the broader implications of its metabolic capabilities in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NSMB00000000.1 Bac0015412 Pseudomonas aeruginosa strain PN586(35)w IPC669_76.1 "Pseudomonas aeruginosa strain PN586(35)w IPC669_76.1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in a variety of habitats. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, and demonstrates aerobic respiration, requiring oxygen for growth. The optimal growth temperature for this strain is 25.0°C, indicating its preference for moderate environmental conditions.↵↵The ecological versatility of Pseudomonas aeruginosa strains, including PN586(35)w IPC669_76.1, allows them to inhabit diverse environments, ranging from soil and water to various organic materials. This adaptability may be partly attributed to the organism’s metabolic flexibility and ability to utilize a wide range of carbon sources. Furthermore, the strain's capability to thrive in aerobic conditions suggests its potential role in nutrient cycling and organic matter decomposition in ecosystems where oxygen is available.↵↵Understanding the traits of Pseudomonas aeruginosa strain PN586(35)w IPC669_76.1 can provide valuable insights into its ecological roles and interactions within microbial communities, particularly in environments where organic compounds are abundant and oxygen levels are sufficient for aerobic respiration." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 NSVB00000000.1 Bac0015413 Pseudomonas aeruginosa strain PA-W7 IPC3_68.1 "Pseudomonas aeruginosa strain PA-W7 IPC3_68.1 is a Gram-negative, rod-shaped bacterium that typically exists as individual cells. This strain thrives optimally at a temperature of 25.0°C and exhibits heterotrophic metabolism, utilizing organic compounds as its energy source. As an aerobe, PA-W7 IPC3_68.1 requires oxygen for its growth and metabolic processes.↵↵The habitat of Pseudomonas aeruginosa is diverse, allowing this strain to inhabit multiple environments, which may include soil, water, and various surfaces. This versatility in habitat suggests a robust adaptability to different ecological niches, potentially enabling it to contribute to nutrient cycling and interactions within microbial communities. The ability to grow in varied conditions may also facilitate its survival in fluctuating environments, underscoring its ecological significance.↵↵Overall, the traits of Pseudomonas aeruginosa strain PA-W7 IPC3_68.1 highlight its capacity for adaptation and survival, which may play a crucial role in its ecological dynamics and interactions with other microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 NTBB00000000.1 Bac0015414 Escherichia coli strain KCJK3945 "Escherichia coli strain KCJK3945 is a Gram-negative, rod-shaped bacterium characterized by its occurrence in pairs and singles. This strain thrives optimally at a temperature of 37.0°C, aligning with the typical human body temperature, which suggests its potential association with warm-blooded hosts. As a facultative anaerobe, E. coli strain KCJK3945 can survive in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within its host-associated habitat.↵↵The Gram-negative nature of this strain indicates the presence of an outer membrane, which plays a critical role in its interactions with the host's immune system and may influence its physiological responses. The rod shape of E. coli facilitates motility and colonization, which are essential for its survival and function within host environments.↵↵Given its habitat, E. coli strain KCJK3945 may contribute to the complex microbiota of the gastrointestinal tract, where it can play roles in nutrient absorption and synthesis of essential vitamins. The ability to thrive in both oxygen-rich and oxygen-poor areas of the gut suggests a versatile metabolic capacity, which may help maintain its presence and function in diverse microenvironments. The ecological significance of E. coli strain KCJK3945 may extend to its interactions with other microbial species, contributing to the overall homeostasis of the gut microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NTDZ00000000.1 Bac0015415 Marinobacter guineae strain M3B "Marinobacter guineae strain M3B is a Gram-negative, rod-shaped bacterium that exhibits strict aerobic metabolism and is non-spore-forming. This organism is part of the Marinobacter genus, which is typically associated with marine environments. The Gram-negative characteristic suggests that M. guineae strain M3B possesses a thin peptidoglycan layer surrounded by an outer membrane, contributing to its structural integrity and influencing its interactions with other microorganisms and its environment.↵↵As an aerobic microbe, M. guineae strain M3B requires oxygen for growth and may play a role in biogeochemical cycles within its habitat, potentially participating in the degradation of organic materials in oceanic settings. The non-spore-forming nature of this strain indicates a reliance on favorable environmental conditions for survival, as it does not produce spores to withstand unfavorable stresses.↵↵The traits of Marinobacter guineae strain M3B suggest that it could be part of a complex microbial community that contributes to nutrient cycling, particularly in marine ecosystems where organic matter is abundant. Further investigation into its metabolic pathways may provide insights into its functional roles within such communities, especially regarding its potential contributions to the degradation of marine pollutants or organic compounds." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter guineae Gram-negative rod aerobic non-spore-forming 432303 NTFI00000000.1 Bac0015416 Serratia marcescens strain CHE4 "Serratia marcescens strain CHE4 is a Gram-negative, rod-shaped bacterium classified as a facultative anaerobe, capable of thriving in diverse habitats. This strain exhibits chemoheterotrophic metabolism, utilizing organic compounds for energy and growth. Optimal growth conditions for S. marcescens strain CHE4 occur at a temperature of approximately 37.0°C, which aligns with the typical physiological temperature range for many mesophilic organisms.↵↵As a nonsporulating microbe, strain CHE4 does not produce spores, which may influence its survival strategies in various environments. The facultative anaerobic nature of this strain allows it to adapt to varying oxygen levels, enabling it to thrive in both aerobic and anaerobic conditions. This adaptability suggests that S. marcescens strain CHE4 could play a role in nutrient cycling in ecological niches where oxygen availability fluctuates.↵↵Overall, the combination of its metabolic versatility and adaptability to different habitats positions S. marcescens strain CHE4 as a potentially significant player in microbial communities, particularly in environments where organic matter is plentiful, and oxygen levels are variable. Further research may elucidate its specific ecological interactions and contributions in these diverse settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 NTFM00000000.1 Bac0015417 Brunnivagina elsteri CCALA 953 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Brunnivagina Brunnivagina elsteri 987040 NTFS00000000.1 Bac0015418 Rhodopirellula sp. SM50 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula sp. SM50 595453 NTFY00000000.1 Bac0015419 Pseudothioclava arenosa strain CAU 1312 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudothioclava Pseudothioclava arenosa 1795308 NTJD00000000.1 Bac0015420 Lysobacteraceae bacterium NML93-0792 93-0792_50 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium NML93-0792 2032566 NTJH00000000.1 Bac0015421 Rhodothermaeota bacterium MED-G19 Pseudomonadati Rhodothermota Rhodothermaeota bacterium MED-G19 1986240 NTKI00000000.1 Bac0015422 Sphingomonadaceae bacterium MED-G03 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonadaceae bacterium MED-G03 1986231 NTKY00000000.1 Bac0015423 Neisseria meningitidis strain M26503 "Neisseria meningitidis strain M26503 is a Gram-negative, aerobic coccus that typically arranges itself in pairs. This strain thrives optimally at a temperature of 35.0°C, which is consistent with the physiological conditions found in the human body, its primary habitat. As a host-associated microbe, N. meningitidis is known to inhabit the nasopharynx of healthy individuals, where it can exist as a commensal organism. ↵↵The coccoid shape and specific arrangement of this strain may facilitate its survival and colonization within the mucosal surfaces of the respiratory tract. The ability to grow in an oxygen-rich environment suggests that N. meningitidis metabolizes oxygen for energy, which could contribute to its virulence and adaptability in the host. ↵↵Understanding the characteristics of N. meningitidis strain M26503 can provide valuable insights into its ecological niche, particularly in relation to its interactions with the human immune system. These interactions may influence the dynamics of microbial communities in the nasopharyngeal region, potentially impacting both health and disease states in the host." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 NTLY00000000.1 Bac0015424 Bacillus anthracis strain AFS027605 "Bacillus anthracis strain AFS027605 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrives optimally at a temperature of 37.0°C. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which it obtains from its natural habitat in soil. As a facultative anaerobe, Bacillus anthracis strain AFS027605 can grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions.↵↵The ability to sporulate is significant for this strain, as it provides resilience in challenging environments, enabling the bacterium to withstand extreme conditions and remain viable for extended periods. The soil habitat of this strain suggests a potential role in the nutrient cycling processes within terrestrial ecosystems, where it may contribute to the breakdown of organic matter and influence soil health.↵↵Overall, the combination of its Gram-positive structure, optimal growth temperature, and metabolic characteristics positions Bacillus anthracis strain AFS027605 as a notable member of the Bacillus genus, with specific adaptations that allow it to thrive in its ecological niche. Understanding these traits can provide insights into the ecological dynamics of soil microorganisms and their contributions to the environment." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NTQC00000000.1 Bac0015425 Bacillus cereus strain AFS025165 "Bacillus cereus strain AFS025165 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen during metabolic processes. ↵↵Bacillus cereus, as a species, is known for its ability to inhabit diverse environments, which suggests that strain AFS025165 may also be found in multiple habitats, potentially including soil, water, and plant-associated settings. The ability of this strain to maintain aerobic respiration further implies a role in nutrient cycling and organic matter decomposition in its ecological niche. ↵↵Understanding the physiological traits of Bacillus cereus strain AFS025165 can provide insights into its functional roles in various ecosystems, particularly in relation to its interactions with other microorganisms and its contributions to the microbial community structure in its habitat." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NTQT00000000.1 Bac0015426 Priestia megaterium strain AFS018038 "Priestia megaterium strain AFS018038 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in aerobic conditions. This strain is part of a diverse group of microorganisms found in multiple habitats, indicating its ecological versatility and adaptability to various environmental conditions. ↵↵As a sporulating organism, Priestia megaterium strain AFS018038 possesses the ability to form endospores, which are resilient structures that enable it to survive extreme conditions, including nutrient depletion and desiccation. This trait is particularly significant as it allows the bacterium to persist in environments that may fluctuate between favorable and harsh conditions.↵↵The aerobic requirement of this strain suggests that it relies on oxygen for its metabolic processes, which is typical of many bacteria that engage in respiration to derive energy. The ability to inhabit multiple ecological niches may reflect its metabolic flexibility and potential interactions with other microbial communities.↵↵Overall, the ecological adaptability of Priestia megaterium strain AFS018038, combined with its sporulation capability and aerobic metabolism, underscores its potential role in various biogeochemical cycles and its importance in microbial ecology. This strain may contribute to nutrient cycling in its habitats, although further studies would be necessary to elucidate its specific ecological roles and interactions in those environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 NTTT00000000.1 Bac0015427 Bacillus sp. AFS017274 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS017274 2033488 NTTZ00000000.1 Bac0015428 Bacillus cereus strain AFS016962 "Bacillus cereus strain AFS016962 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain has an optimal growth temperature of 25.0°C, suggesting it is well-adapted to moderate environmental conditions. Bacillus cereus is known for its versatile habitat, capable of colonizing a variety of environments, which may include soil, water, and decaying organic matter.↵↵The chain formation observed in this strain may facilitate cooperative behaviors among cells, potentially enhancing nutrient acquisition in its natural habitats. The aerobic nature of Bacillus cereus strain AFS016962 indicates that it relies on oxygen for respiration, which may influence its ecological interactions and distribution. Understanding the growth conditions and morphological characteristics of this strain can provide insights into its adaptability and potential roles in various ecosystems. ↵↵This adaptability to diverse habitats and moderate temperatures underscores the ecological significance of Bacillus cereus strain AFS016962, suggesting its potential involvement in nutrient cycling and organic matter decomposition in various environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NTUE00000000.1 Bac0015429 Bacillus sp. AFS015896 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS015896 2033487 NTUO00000000.1 Bac0015430 Bacillus sp. AFS012607 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS012607 2033485 NTVM00000000.1 Bac0015431 Bacillus sp. AFS006103 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS006103 2033483 NTXX00000000.1 Bac0015432 Bacillus cereus strain AFS005615 "Bacillus cereus strain AFS005615 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and requires aerobic conditions for growth. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. Bacillus cereus species are known to inhabit a variety of environments, which indicates that strain AFS005615 may be well-adapted to diverse ecological niches.↵↵The ability of this strain to form chains could have implications for its physiological interactions within its habitat, as chain formation may influence nutrient acquisition, competitive interactions, and biofilm development. The aerobic nature of B. cereus strain AFS005615 points to its reliance on oxygen for metabolic processes, which could also affect its distribution in environments where oxygen levels fluctuate.↵↵Understanding the specific traits of B. cereus strain AFS005615 can enhance our knowledge of its ecological role and potential applications in biotechnology or environmental microbiology. The strain's adaptability to multiple habitats may suggest its potential utility in bioremediation or as a model organism for studying microbial responses to varying environmental conditions. Further research may elucidate the ecological functions of this strain in its native habitats, contributing to a broader understanding of microbial diversity and dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NTYD00000000.1 Bac0015433 Bacillus sp. AFS001701 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS001701 2033480 NTZO00000000.1 Bac0015434 Bacillus wiedmannii strain AFS026476 "Bacillus wiedmannii strain AFS026476 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits an optimal growth temperature of 25.0°C, indicating its preference for mesophilic conditions. It has been isolated from multiple habitats, suggesting a versatile ecological adaptability that may contribute to its survival across diverse environments.↵↵As a member of the Bacillus genus, this strain is likely to possess traits associated with spore formation, although specifics regarding sporulation were not provided. Its aerobic nature implies a reliance on oxygen for metabolic processes, which may influence its distribution and ecological interactions. The ability to thrive in various habitats could point to a role in nutrient cycling or biodegradation, particularly in environments where organic matter is present.↵↵The ecological significance of Bacillus wiedmannii strain AFS026476 may extend to its potential interactions with other microbial communities within its habitats, potentially influencing soil health or participating in biogeochemical processes. Further studies could elucidate its specific functionalities in these ecosystems, providing insights into its contributions to microbial diversity and ecological resilience." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUAU00000000.1 Bac0015435 Bacillus sp. AFS026049 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS026049 2033493 NUBA00000000.1 Bac0015436 Bacillus wiedmannii strain AFS024711 "Bacillus wiedmannii strain AFS024711 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. The ability to form chains is characteristic of members of the Bacillus genus, which can be an adaptation for survival in various environmental conditions.↵↵Bacillus wiedmannii strain AFS024711 is isolated from diverse habitats, suggesting a versatile ecological niche. This adaptability may enable it to play a role in various biogeochemical cycles or in interactions with other microorganisms in its environment. Understanding the specific environments from which this strain is isolated can provide insights into its ecological functions and potential applications in biotechnology or environmental microbiology. Such traits highlight the potential of Bacillus wiedmannii strain AFS024711 in contributing to microbial diversity and functionality within its habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUBD00000000.1 Bac0015437 Bacillus wiedmannii strain AFS023251 "Bacillus wiedmannii strain AFS023251 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25°C, suggesting its adaptation to moderate environmental conditions. Its ability to inhabit multiple habitats indicates a versatile ecological niche, which may include soil, water, or organic matter, although specific environments were not detailed in the provided traits.↵↵As an aerobic microorganism, Bacillus wiedmannii strain AFS023251 requires oxygen for growth, which may influence its distribution and interactions within various ecosystems. The chain formation characteristic of this strain may play a role in its ecological interactions, potentially affecting its ability to colonize surfaces or compete with other microorganisms.↵↵Overall, the traits of Bacillus wiedmannii strain AFS023251 highlight its adaptability and potential functional roles in diverse ecological settings, particularly in environments where aerobic conditions prevail. Further research could elucidate its specific contributions to nutrient cycling or its interactions with other microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUBN00000000.1 Bac0015438 Bacillus wiedmannii strain AFS009340 "Bacillus wiedmannii strain AFS009340 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain has an optimal growth temperature of 25.0°C and is characterized as an aerobe, requiring oxygen for its metabolic processes. The ability to thrive in various habitats suggests a versatile ecological adaptability, which may enable it to occupy diverse niches in the environment. ↵↵The chain arrangement of Bacillus wiedmannii strain AFS009340 is a notable morphological trait that can influence its interaction with other microorganisms and its overall ecological role. Given its aerobic nature, this strain may play a significant part in nutrient cycling within its habitats, potentially contributing to organic matter decomposition or influencing microbial community dynamics. Understanding the specific ecological roles of such strains can provide insights into their contributions to ecosystem functions and their potential applications in biotechnology or environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUDT00000000.1 Bac0015439 Bacillus wiedmannii strain AFS008930 "Bacillus wiedmannii strain AFS008930 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits optimal growth at 25.0°C, suggesting a preference for moderate temperatures, which may correlate with its ability to inhabit diverse ecological niches. The presence of this bacterium in multiple habitats indicates its adaptability and potential role in various microbial communities.↵↵The chain arrangement of Bacillus wiedmannii strain AFS008930 may facilitate its survival and competitiveness in different environments, potentially enhancing its ability to access nutrients and resist predation. Given the characteristics of the Bacillus genus, it is plausible that this strain possesses the capability for forming spores, although spore formation is not explicitly confirmed in the provided traits. If spore formation occurs, it would likely enhance its resilience against environmental stressors.↵↵The ecological implications of Bacillus wiedmannii strain AFS008930's traits could be significant, as its aerobic nature points to a potential role in biogeochemical cycles, particularly in the degradation of organic materials in oxygen-rich environments. Such functional roles can contribute to nutrient cycling and soil health, highlighting the importance of this strain within its ecological context. Further investigation into its specific interactions within microbial communities could provide deeper insights into its contributions to ecosystem functioning." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUDX00000000.1 Bac0015440 Bacillus pseudomycoides strain AFS008599 "Bacillus pseudomycoides strain AFS008599 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives optimally at 40.0°C. As a chemoheterotroph, it utilizes organic compounds as energy sources, which is characteristic of many soil-dwelling bacteria. This strain's ability to sporulate suggests it may have adapted to survive in fluctuating environmental conditions often encountered in soil habitats, such as nutrient scarcity and temperature variations. ↵↵The optimal growth temperature of 40.0°C indicates that this strain may be well-suited for warmer soil environments, potentially influencing its distribution and ecological interactions. The sporulation capability further enhances its resilience, allowing it to endure adverse conditions by forming protective spores. Consequently, Bacillus pseudomycoides strain AFS008599 may play a significant role in nutrient cycling within its soil habitat, contributing to the degradation of organic matter and the maintenance of soil health. This trait highlights its potential ecological importance in terrestrial ecosystems, where it could influence soil dynamics and microbial community structure." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 64104 NUDY00000000.1 Bac0015441 Bacillus sp. AFS002410 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS002410 2033481 NUEU00000000.1 Bac0015442 Bacillus cereus strain AFS057148 "Bacillus cereus strain AFS057148 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and is categorized as an aerobic organism, indicating that it requires oxygen for its metabolic processes. ↵↵Bacillus cereus is known for its ability to inhabit diverse environments, suggesting a high degree of ecological versatility. The capability to grow in multiple habitats may be attributed to its robust physiological traits, enabling it to adapt to various nutrient sources and environmental conditions. The arrangement of cells in chains could facilitate communication and resource sharing among individual cells, which is characteristic of many Bacillus species. ↵↵The unique combination of these traits positions Bacillus cereus strain AFS057148 as a potentially important organism in its ecological niche, potentially contributing to nutrient cycling and other biological processes within its environment. Further investigation into its ecological roles could reveal insights into its interactions with other microorganisms and its overall impact on ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUFX00000000.1 Bac0015443 Bacillus cereus strain AFS054043 "Bacillus cereus strain AFS054043 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic growth. This strain demonstrates optimal growth at a temperature of 25.0°C and is found in a variety of habitats, indicating a versatile ecological adaptability. As a member of the Bacillus genus, it is characterized by its ability to form endospores, which likely contributes to its survival in diverse environmental conditions.↵↵The aerobic nature of Bacillus cereus strain AFS054043 suggests that it relies on oxygen for its metabolic processes, which may influence its ecological role in nutrient cycling and interactions with other microorganisms. Furthermore, the strain's ability to thrive in multiple habitats hints at its potential for colonization in varied ecological niches, possibly including soil, water, and plant surfaces.↵↵The unique combination of its morphological traits, optimal growth conditions, and habitat versatility suggests that Bacillus cereus strain AFS054043 may play a significant role in the microbial dynamics of its environments, potentially influencing soil health and nutrient availability. Further investigation into its specific interactions within microbial communities could provide deeper insights into its ecological importance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUHE00000000.1 Bac0015444 Bacillus sp. AFS053548 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS053548 2033505 NUHI00000000.1 Bac0015445 Bacillus cereus strain AFS053272 "Bacillus cereus strain AFS053272 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0 °C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. The organism is known to inhabit multiple environments, which may include soil and other organic materials, reflecting its ecological versatility.↵↵As a member of the Bacillus genus, B. cereus strain AFS053272 is part of a group characterized by its resilience and ability to form endospores, although endospore formation traits are not specified here. The strain's adaptability to a range of habitats suggests a potential role in nutrient cycling within various ecosystems. Furthermore, the aerobic nature of this bacterium implies that it may engage in specific interactions with other microbial communities, particularly in environments where oxygen is readily available, thereby influencing local microbial dynamics and biogeochemical processes.↵↵In summary, Bacillus cereus strain AFS053272 exemplifies the ecological flexibility and adaptive strategies of the Bacillus genus, potentially contributing to the microbiological diversity and functional capabilities of the ecosystems it inhabits." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUHL00000000.1 Bac0015446 Bacillus cereus strain AFS053130 "Bacillus cereus strain AFS053130 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives optimally at a temperature of 25.0°C. As an aerobic organism, this strain requires oxygen for growth and metabolic processes. ↵↵Bacillus cereus is known for its resilience and adaptability, commonly inhabiting diverse environments, which may include soil, water, and various organic materials. This versatility in habitat allows the strain to occupy multiple ecological niches, potentially contributing to its survival and proliferation in varying conditions. The chain formation of this strain is indicative of its reproductive strategy and may play a role in its ability to colonize and exploit resources effectively. ↵↵The optimal growth temperature of 25.0°C suggests that Bacillus cereus strain AFS053130 may be well-suited for environments that are temperate, which could influence its distribution and ecological interactions. The aerobic nature of the bacterium implies that it may engage in metabolic activities that utilize oxygen, allowing it to participate in various biogeochemical cycles. ↵↵Overall, the traits exhibited by Bacillus cereus strain AFS053130 highlight its ecological versatility and potential role in nutrient cycling within its habitats, reflecting the broader adaptability of the Bacillus genus in diverse ecological contexts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUHO00000000.1 Bac0015447 Bacillus cereus strain AFS046754 "Bacillus cereus strain AFS046754 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolic characteristics, indicating that it requires oxygen for its growth and survival. Its diverse habitat suggests adaptability to various environmental conditions, which is common among members of the Bacillus genus. ↵↵Bacillus cereus is known for its ability to form endospores, a trait that may contribute to its resilience in fluctuating environments. The presence of multiple habitats indicates that this strain can potentially occupy a range of ecological niches, which may include soil, water, and plant surfaces. The adaptability of Bacillus cereus strains to different environments may facilitate their roles in nutrient cycling and soil health, highlighting their ecological significance. ↵↵Understanding the traits of Bacillus cereus strain AFS046754 can provide insights into its ecological interactions and potential applications in biotechnology, such as in bioremediation or agriculture, where its aerobic metabolism may play a role in promoting soil fertility. Further investigations into its specific ecological roles could enhance our understanding of its contributions to various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUJK00000000.1 Bac0015448 Bacillus cereus strain AFS044520 "Bacillus cereus strain AFS044520 is a Gram-positive, rod-shaped bacterium that typically forms chains and is identified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for moderate environmental conditions. The ability of B. cereus to inhabit multiple habitats indicates its ecological versatility and adaptability, which may contribute to its survival in diverse environments.↵↵As a member of the Bacillus genus, this strain is likely to exhibit traits common to its relatives, such as the formation of spores, which can enhance its resilience in fluctuating environmental conditions. The aerobic nature of Bacillus cereus strain AFS044520 implies that it requires oxygen for growth, further influencing its ecological niche and interactions with other microorganisms.↵↵The chain arrangement of cells may facilitate cooperative behaviors or nutrient sharing, which can be advantageous in complex microbial communities. The ecological implications of such arrangements are significant, as they could promote enhanced survival in various habitats, ranging from soil to organic matter, where competition for resources is prevalent. Further investigation into the specific roles of Bacillus cereus strain AFS044520 in its habitats could provide valuable insights into its ecological functions and interactions within microbial consortia." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUKG00000000.1 Bac0015449 Bacillus sp. AFS041924 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS041924 2033503 NULG00000000.1 Bac0015450 Bacillus sp. AFS040349 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS040349 2033502 NUMC00000000.1 Bac0015451 Bacillus cereus strain AFS038688 "Bacillus cereus strain AFS038688 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. Its ability to inhabit multiple habitats suggests a versatile ecological niche, allowing it to adapt to various environmental contexts.↵↵As a member of the Bacillus genus, this strain shares common traits with its relatives, including the capacity for spore formation, though specific sporulation traits are not detailed here. The aerobic nature of Bacillus cereus strain AFS038688 implies that it relies on oxygen for its metabolic processes, which may influence its distribution and survival in different environments.↵↵The adaptability of this bacterium to multiple habitats highlights its potential role in nutrient cycling within ecosystems, particularly in soil and organic matter decomposition. Further research may elucidate the specific ecological interactions and contributions of strain AFS038688 in its native environments, particularly regarding its effects on microbial community dynamics and soil health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUMV00000000.1 Bac0015452 Bacillus sp. AFS037270 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS037270 2033499 NUNF00000000.1 Bac0015453 Bacillus cereus strain AFS036423 "Bacillus cereus strain AFS036423 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain exhibits optimal growth at a temperature of 25.0 °C, indicating a preference for moderate environmental temperatures. The versatility of Bacillus cereus strains, including AFS036423, allows them to inhabit diverse ecological niches, which may range from soil to various organic materials.↵↵The rod-shaped morphology and chain arrangement of this strain suggest potential adaptations for survival in its habitat, facilitating nutrient acquisition and colonization. As an aerobe, Bacillus cereus strain AFS036423 requires oxygen for its metabolic processes, which may influence its ecological role, particularly in environments where aerobic conditions prevail.↵↵Understanding the physiological and morphological characteristics of Bacillus cereus strains, such as AFS036423, can provide insights into their ecological dynamics and interactions within microbial communities. The ability of this strain to thrive in multiple habitats underscores its ecological versatility and potential contributions to biogeochemical cycles, including nutrient recycling. This adaptability may also enable it to play a significant role in the decomposition of organic matter, highlighting the importance of Bacillus cereus in maintaining ecosystem health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUNH00000000.1 Bac0015454 Bacillus cereus strain AFS031783 "Bacillus cereus strain AFS031783 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain demonstrates optimal growth at a temperature of 25.0°C, indicating a preference for moderate environmental temperatures. ↵↵Bacillus cereus is known for its versatility in habitat, being capable of residing in multiple environments, which may include soil, food products, and various ecological niches. The ability to form chains may enhance its resilience and adaptability in fluctuating conditions, potentially contributing to its survival in diverse habitats.↵↵The ecological significance of Bacillus cereus strain AFS031783 may lie in its role in nutrient cycling and its potential interactions within microbial communities. As a member of the Bacillus genus, this strain may participate in the decomposition of organic materials, aiding in the recycling of nutrients in its environment. Such characteristics underscore the importance of this bacterium in ecological systems, highlighting its potential contributions beyond human health considerations." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUOT00000000.1 Bac0015455 Bacillus sp. AFS031507 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS031507 2033496 NUOW00000000.1 Bac0015456 Bacillus cereus strain AFS030140 "Bacillus cereus strain AFS030140 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and is categorized as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. It is found in multiple habitats, which suggests a versatile ecological niche and the ability to adapt to various environmental factors.↵↵As a member of the Bacillus genus, this strain may exhibit characteristics common to its relatives, such as the formation of spores that contribute to its resilience in fluctuating conditions. The aerobic nature of Bacillus cereus strain AFS030140 indicates its reliance on oxygen for metabolism, which is a key aspect of its ecological interactions and potential roles in nutrient cycling.↵↵The presence of this strain in diverse habitats highlights its ecological significance, potentially aiding in organic matter decomposition and influencing microbial community dynamics. Understanding the traits of Bacillus cereus strain AFS030140 may provide insights into its functional roles within its ecosystems, particularly in relation to its metabolic capabilities and interactions with other microbial species." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUPN00000000.1 Bac0015457 Bacillus sp. AFS029533 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS029533 2033494 NUQC00000000.1 Bac0015458 Bacillus toyonensis strain AFS057443 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NUQJ00000000.1 Bac0015459 Bacillus wiedmannii strain AFS049329 "Bacillus wiedmannii strain AFS049329 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain is optimally adapted to temperatures around 25.0°C, indicating a preference for moderate conditions, which may align with its habitat diversity. The ability to grow in various habitats suggests a versatile metabolic capacity, allowing it to exploit different ecological niches.↵↵As a member of the Bacillus genus, B. wiedmannii strain AFS049329 may possess characteristics common to this group, including the potential for spore formation, although specific spore-related traits are not detailed here. The aerobe classification emphasizes its reliance on oxygen for metabolic processes, which could influence its distribution in environments where oxygen levels are variable.↵↵Notably, the adaptability of Bacillus wiedmannii strain AFS049329 to multiple habitats may reflect a robust survival strategy, enabling it to play a role in various ecosystems, possibly contributing to nutrient cycling or organic matter decomposition. Understanding the ecological implications of this strain's metabolic versatility could be valuable for applications in bioremediation or agricultural enhancement, although further research would be necessary to elucidate specific interactions within its environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NURY00000000.1 Bac0015460 Bacillus toyonensis strain AFS045461 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NUSK00000000.1 Bac0015461 Bacillus wiedmannii strain AFS044295 "Bacillus wiedmannii strain AFS044295 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for moderate environmental temperatures. Its habitat is noted to be diverse, indicating the organism's adaptability to various ecological niches.↵↵The rod shape and chain arrangement of Bacillus wiedmannii are characteristic of the Bacillus genus, which often contributes to its survival in fluctuating conditions. The aerobic nature of this strain implies that it relies on oxygen for metabolic processes, potentially positioning it within environments where oxygen is readily available, such as soil or decaying organic matter.↵↵The ability to thrive in multiple habitats may reflect a role in nutrient cycling or decomposition processes, underscoring the ecological importance of Bacillus wiedmannii strain AFS044295 in its environments. Further studies could elucidate its specific contributions to microbial communities and its potential interactions with other organisms in diverse ecosystems, providing insights into its ecological functions and applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUSP00000000.1 Bac0015462 Bacillus toyonensis strain AFS044250 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NUSQ00000000.1 Bac0015463 Bacillus sp. AFS043905 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS043905 2033504 NUSS00000000.1 Bac0015464 Bacillus wiedmannii strain AFS036771 "Bacillus wiedmannii strain AFS036771 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain is optimally active at a temperature of 25.0°C, indicating its preference for moderate environmental conditions. The presence of multiple habitats suggests that Bacillus wiedmannii strain AFS036771 may exhibit a versatile ecological niche, potentially adapting to various environments where aerobic respiration is favorable.↵↵As a member of the Bacillus genus, this strain likely possesses the ability to form endospores, a trait commonly associated with resilience and survival in fluctuating conditions. While its specific ecological role remains to be elucidated, the adaptability of Bacillus species to diverse habitats may confer significant ecological functions, such as nutrient cycling or interactions with other microorganisms. Further studies could illuminate the environmental significance of Bacillus wiedmannii strain AFS036771, particularly in its potential contributions to soil health or biogeochemical processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUTO00000000.1 Bac0015465 Priestia aryabhattai strain AFS033892 "Priestia aryabhattai strain AFS033892 is a Gram-positive bacterium primarily found in aerobic environments such as granite residual soil, plant roots, and various soil types. This strain thrives in well-oxygenated conditions, which aligns with its classification as an aerobic microbe. Its presence in granite residual soil suggests a potential role in the mineral weathering process, contributing to soil formation and nutrient cycling. ↵↵The association with plant roots indicates that Priestia aryabhattai strain AFS033892 may engage in symbiotic relationships with plants, possibly aiding in nutrient absorption or enhancing plant growth through various biochemical interactions. The ecological versatility of this strain, along with its specific habitat preferences, highlights its potential importance in soil health and plant ecology.↵↵The unique combination of traits exhibited by strain AFS033892 positions it as a significant player in the rhizosphere, where it could influence soil dynamics and plant-microbe interactions. Further research into its metabolic capabilities and interactions with other soil microorganisms could provide valuable insights into its ecological roles and contributions to soil ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia aryabhattai positive aerobic granite residual soil; plant roots; soil 412384 NUTZ00000000.1 Bac0015466 Bacillus wiedmannii strain AFS029838 "Bacillus wiedmannii strain AFS029838 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic metabolism. This strain thrives optimally at 25.0 °C, suggesting a preference for moderate environmental temperatures. The ability to grow in multiple habitats indicates its versatility and potential adaptability to various ecological niches.↵↵As an aerobic organism, Bacillus wiedmannii strain AFS029838 requires oxygen for its growth, which may influence its distribution in environments where oxygen availability varies. The formation of cellular chains may be a strategy for increased survival in its natural habitats, potentially facilitating the exchange of nutrients and genetic material among cells.↵↵Overall, the traits of Bacillus wiedmannii strain AFS029838 highlight its ecological adaptability and suggest its potential role in various ecological processes, such as nutrient cycling in diverse environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NUUQ00000000.1 Bac0015467 Bacillus thuringiensis strain AFS085496 "Bacillus thuringiensis strain AFS085496 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as a facultative anaerobe. This strain is primarily host-associated, indicating a potential relationship with specific organisms or environments that provide a niche for its growth and survival. As a sporulating bacterium, B. thuringiensis strain AFS085496 is capable of forming resilient spores that allow it to endure adverse conditions, thereby enhancing its ecological persistence.↵↵The facultative anaerobic nature of this strain suggests that it can thrive in both aerobic and anaerobic environments, which may enable it to occupy a variety of ecological niches. This adaptability could be particularly advantageous in host-associated habitats where oxygen levels may fluctuate. Furthermore, the ability to sporulate is a significant trait that supports its survival strategy in potentially competitive or hostile environments.↵↵While the specific ecological roles and interactions of Bacillus thuringiensis strain AFS085496 remain to be fully elucidated, its traits indicate potential applications in biological control and agriculture, particularly in contexts where it may interact with other organisms. The ability of this strain to form spores and adapt to various oxygen conditions positions it as a noteworthy candidate for further research into its ecological functions and potential benefits in agricultural settings." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NUVX00000000.1 Bac0015468 Bacillus cereus strain AFS083741 "Bacillus cereus strain AFS083741 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 25.0°C, which indicates a preference for moderate conditions that may be found in various habitats. As a member of the Bacillus genus, it is important to note that this strain is part of a broader group known for their ability to form endospores, although specific spore formation traits for AFS083741 are not detailed here.↵↵The habitat versatility of Bacillus cereus strain AFS083741 suggests its potential adaptability to different ecological niches, which may include soil, water, and various organic substrates. This adaptability could play a significant role in biogeochemical cycles, particularly in the decomposition of organic matter and nutrient cycling.↵↵Given the traits of this strain, its aerobic nature likely contributes to its ecological roles in environments where oxygen is available, potentially influencing microbial community dynamics and interactions with other microorganisms. This strain exemplifies the ecological significance of Bacillus species in diverse environments, where they can participate in processes such as soil fertility and organic material breakdown, thereby impacting ecosystem health and stability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUWJ00000000.1 Bac0015469 Bacillus anthracis strain AFS081271 "Bacillus anthracis strain AFS081271 is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, characteristic of the Bacillus genus. This strain is a chemoheterotroph, deriving its energy from organic compounds, and thrives optimally at a temperature of 37.0°C, which aligns with the temperature found in many mammalian hosts. ↵↵Bacillus anthracis is typically found in soil, where it can persist in a dormant spore form, contributing to its resilience in various environmental conditions. The facultative anaerobic nature of strain AFS081271 indicates that it can grow in both aerobic and anaerobic environments, allowing it to exploit diverse niches within its terrestrial habitat. This adaptability may facilitate its survival in fluctuating environmental conditions, enhancing its ecological persistence.↵↵Overall, the traits of Bacillus anthracis strain AFS081271 suggest that this strain is well-suited for survival in soil ecosystems, where it can remain dormant as spores until favorable conditions for germination arise. This ability to sporulate and maintain metabolic flexibility underscores the ecological versatility of this bacterium, positioning it as a significant organism of interest in studies related to soil microbiology and pathogen ecology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NUXH00000000.1 Bac0015470 Bacillus cereus strain AFS080704 "Bacillus cereus strain AFS080704 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. B. cereus is known to inhabit a variety of environments, which may include soil, plants, and decaying organic matter, suggesting its role in nutrient cycling within diverse ecosystems.↵↵The chain arrangement of B. cereus AFS080704 could facilitate its survival in certain habitats by enhancing its ability to form biofilms, thereby providing protection against environmental stressors. The bacterium's adaptability to multiple habitats underscores its ecological versatility. Understanding the environmental preferences and metabolic characteristics of this strain may offer insights into its potential applications in biotechnology, such as bioremediation or soil health improvement, where oxygen presence is a significant factor. Further studies could elucidate the specific ecological roles that B. cereus strain AFS080704 plays in its native environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUXK00000000.1 Bac0015471 Bacillus cereus strain AFS079345 "Bacillus cereus strain AFS079345 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic growth. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. Bacillus cereus is known to inhabit a variety of ecological niches, reflecting its adaptability and resilience in diverse habitats.↵↵The rod shape and chain arrangement of this bacterium are characteristic of the Bacillus genus, which is known for its ability to form spores and survive in challenging environments. The aerobic nature of strain AFS079345 suggests that it requires oxygen for metabolic processes, which may influence its distribution in environments where oxygen availability varies.↵↵The ecological versatility of Bacillus cereus strain AFS079345 may contribute to its role in various biogeochemical processes, including nutrient cycling in soil and potential interactions with other microorganisms. Understanding the specific habitats and environmental conditions favoring this strain could provide insights into its ecological function and potential applications in bioremediation or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUXY00000000.1 Bac0015472 Bacillus thuringiensis strain AFS075396 "Bacillus thuringiensis strain AFS075396 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is categorized as a facultative anaerobe. This strain is primarily found in host-associated environments, suggesting a potential symbiotic relationship or specific interactions with host organisms.↵↵The ability of B. thuringiensis to sporulate is a significant characteristic, allowing the bacterium to survive in adverse conditions and contributing to its persistence in various habitats. As a facultative anaerobe, strain AFS075396 can thrive in both aerobic and anaerobic conditions, providing it with a versatile metabolic capacity that may enhance its adaptability to different ecological niches.↵↵Notably, the host-associated habitat of this strain may indicate its role in specific biological processes, such as nutrient cycling or microbial community dynamics within host ecosystems. Understanding the interactions of this strain with its host and the surrounding microbial community could provide insights into its ecological significance and potential applications in biotechnology or agriculture. Overall, Bacillus thuringiensis strain AFS075396 exemplifies the complex relationships that microorganisms can establish with their environments and hosts, highlighting the importance of studying microbial traits in understanding their ecological roles." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NUZE00000000.1 Bac0015473 Bacillus cereus strain AFS074395 "Bacillus cereus strain AFS074395 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is an aerobic organism, requiring oxygen for its metabolic processes, and it thrives at an optimal temperature of 25.0°C. Its ability to inhabit multiple environments suggests a versatile ecological niche and adaptability to varying conditions.↵↵The chain formation observed in this strain may have implications for its growth characteristics and interactions within microbial communities, potentially influencing its ecological roles in diverse habitats. The aerobic nature of Bacillus cereus strain AFS074395 indicates that it may engage in oxygen-dependent metabolic pathways, which could affect its survival and competitiveness in oxygen-rich environments. Overall, the combination of its morphological traits, temperature preference, and aerobic requirements highlights the ecological versatility of this strain, positioning it as an organism of interest for further studies in microbial ecology and environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NUZN00000000.1 Bac0015474 Bacillus sp. AFS073361 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS073361 2033511 NUZU00000000.1 Bac0015475 Bacillus thuringiensis strain AFS065400 "Bacillus thuringiensis strain AFS065400 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated habitats. This strain demonstrates facultative anaerobic respiration, allowing it to adapt to varying oxygen levels within its environment, which may include association with various organisms. ↵↵Bacillus thuringiensis is commonly recognized for its production of insecticidal crystal proteins, yet specific details regarding this strain's protein production or efficacy against particular pests are not provided in the available trait data. The sporulating capability of strain AFS065400 suggests a survival strategy that enables it to withstand adverse environmental conditions. ↵↵The facultative anaerobic nature of this bacterium implies that it can utilize both aerobic and anaerobic metabolic pathways, potentially enhancing its adaptability and survival in diverse ecological niches. This adaptability may also enable it to play a role in the microbial dynamics of its host-associated habitat, contributing to nutrient cycling or influencing the microbiome of the host organism. Understanding the ecological role of Bacillus thuringiensis strain AFS065400 could further elucidate its interactions within host environments and its potential applications in biological control or bioremediation strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NVCO00000000.1 Bac0015476 Bacillus cereus strain AFS061806 "Bacillus cereus strain AFS061806 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a member of the Bacillus genus, it is capable of surviving in diverse habitats, which may include soil, food products, and various environmental niches, reflecting its adaptability and resilience.↵↵The aerobic nature of Bacillus cereus strain AFS061806 suggests that it requires oxygen for its metabolic processes, which may influence its distribution in different ecological contexts. The organism's capability to form chains could be indicative of its growth habits and potential interactions with other microbial species in its habitat. ↵↵Understanding the traits of Bacillus cereus strain AFS061806 can provide insights into its role within microbial communities, especially in environments where oxygen is present. Its ability to thrive in varied habitats might contribute to the ecological dynamics of those environments, potentially influencing nutrient cycling and interactions with other microorganisms. Further investigation into this strain could illuminate its functional roles and contributions to ecosystem processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NVDG00000000.1 Bac0015477 Bacillus thuringiensis strain AFS060060 "Bacillus thuringiensis strain AFS060060 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic metabolism and is capable of sporulation. This strain is primarily host-associated, indicating a potential relationship with specific hosts in its ecological niche. The ability to form spores enables B. thuringiensis AFS060060 to withstand adverse environmental conditions, contributing to its survival and persistence in host-associated habitats.↵↵As a member of the Bacillus genus, this strain is likely to exhibit characteristics typical of other Bacillus species, including the production of various biochemicals that may play a role in its interactions with host organisms. The facultative anaerobic nature of this bacterium suggests that it can thrive in both oxygen-rich and low-oxygen environments, which may facilitate its colonization of diverse host tissues or environments where oxygen availability fluctuates.↵↵The ecological insight provided by the host-associated habitat of Bacillus thuringiensis strain AFS060060 highlights its potential role in the microbiome of its host organism. This association may imply a symbiotic relationship, where the bacterium could contribute to the host's health or development, or conversely, it may indicate a competitive role within the microbial community associated with the host. Further studies are necessary to elucidate the specific interactions and contributions of this strain within its ecological context." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NVDU00000000.1 Bac0015478 Bacillus toyonensis strain AFS083298 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NVFO00000000.1 Bac0015479 Bacillus toyonensis strain AFS081174 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NVFU00000000.1 Bac0015480 Bacillus pseudomycoides strain AFS080276 "Bacillus pseudomycoides strain AFS080276 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive optimally at a temperature of 40.0°C. This strain exhibits chemoheterotrophic metabolic capabilities, utilizing organic compounds as energy sources, which is typical of many members within the Bacillus genus. ↵↵The ecological niche of B. pseudomycoides strain AFS080276 is primarily soil, suggesting its role in the rhizosphere and its potential involvement in nutrient cycling within terrestrial ecosystems. The ability to form spores allows this microbe to endure unfavorable environmental conditions, enhancing its survival and persistence in diverse soil habitats. Understanding the specific interactions of this bacterium within its soil environment could provide insights into its contributions to soil health and fertility, as well as its potential application in biotechnological processes, such as bioremediation or agricultural enhancement. Further studies could elucidate the ecological roles of this strain, particularly in relation to soil microbial communities and their dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 64104 NVGC00000000.1 Bac0015481 Bacillus wiedmannii strain AFS080080 "Bacillus wiedmannii strain AFS080080 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic conditions. This strain exhibits optimal growth at a temperature of 25.0°C, suggesting a preference for mesophilic environments. ↵↵Bacillus species, including strain AFS080080, are often found in diverse habitats, which may include soil, water, and decaying organic matter, highlighting their role in various biological processes, such as nutrient cycling and organic matter decomposition. The ability to form chains allows for unique interactions within microbial communities, potentially enhancing survival in fluctuating environmental conditions.↵↵Given its aerobic nature, Bacillus wiedmannii strain AFS080080 likely contributes to aerobic metabolic processes in its habitat, which may include the breakdown of complex organic compounds and the release of essential nutrients back into the ecosystem. As such, this strain could play a significant role in maintaining ecological balance and promoting soil health in its various environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NVGE00000000.1 Bac0015482 Bacillus wiedmannii strain AFS077478 "Bacillus wiedmannii strain AFS077478 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 25.0°C and is found in a variety of habitats, indicating its versatility and adaptability to different ecological niches. ↵↵As a member of the Bacillus genus, strain AFS077478 is likely to exhibit traits common to its relatives, such as the ability to form endospores, which allows it to survive in unfavorable conditions. The aerobic nature of this strain suggests it relies on oxygen for its metabolism, which could influence its ecological roles, including its interactions with other microorganisms and its potential involvement in biogeochemical cycles.↵↵The presence of Bacillus wiedmannii in diverse habitats underscores its ecological significance, potentially contributing to nutrient cycling and organic matter decomposition in various ecosystems. Further studies could elucidate its specific roles and interactions within these environments, as well as its utility in biotechnological applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus wiedmannii Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 1890302 NVGQ00000000.1 Bac0015483 Bacillus toyonensis strain AFS073955 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NVHI00000000.1 Bac0015484 Bacillus toyonensis strain AFS072832 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 NVHM00000000.1 Bac0015485 Bacillus anthracis strain AFS072084 "Bacillus anthracis strain AFS072084 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in soil environments. This strain is classified as a chemoheterotroph, utilizing organic compounds as its energy source. It demonstrates facultative anaerobic capabilities, allowing it to grow in both the presence and absence of oxygen, which is advantageous for survival in varying soil conditions. The optimal growth temperature for strain AFS072084 is 37.0°C, aligning with the physiological conditions often encountered in terrestrial ecosystems.↵↵As a sporulating organism, Bacillus anthracis strain AFS072084 can form resilient endospores, enhancing its survival under adverse environmental conditions, such as nutrient depletion or extreme temperatures. The ability to sporulate is a significant trait that allows this bacterium to persist in soil habitats, where conditions can fluctuate. This resilience may facilitate the organism's role in nutrient cycling within the soil microbiome, potentially influencing soil health and ecosystem dynamics. The presence of such strains in soil underscores the complex interactions that exist in terrestrial ecosystems, where microbial communities contribute to ecological balance and functionality." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NVHS00000000.1 Bac0015486 Bacillus pseudomycoides strain AFS069829 "Bacillus pseudomycoides strain AFS069829 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive in soil environments. As a chemoheterotroph, this strain utilizes organic compounds as its energy source, reflecting its adaptation to nutrient-rich soil habitats. It demonstrates optimal growth at 40.0°C, suggesting a thermophilic nature that may contribute to its ecological role in nutrient cycling within warmer soil ecosystems.↵↵The sporulation capability of Bacillus pseudomycoides strain AFS069829 allows it to survive adverse environmental conditions, making it a resilient inhabitant of soil. This trait is particularly advantageous in fluctuating climates where temperature and moisture levels can vary significantly. Additionally, the formation of spores provides this microbe with the potential to persist in harsh environments, facilitating its dispersal and colonization in new habitats.↵↵Overall, the combination of its thermophilic growth preference and sporulation ability positions Bacillus pseudomycoides strain AFS069829 as a significant player in soil ecology, particularly in environments subjected to elevated temperatures. This strain may contribute to the degradation of organic matter and the cycling of nutrients, highlighting its potential importance in maintaining soil health and fertility." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 64104 NVIE00000000.1 Bac0015487 Bacillus pseudomycoides strain AFS065668 "Bacillus pseudomycoides strain AFS065668 is a Gram-positive, rod-shaped bacterium that is capable of sporulation, enabling it to survive in challenging environmental conditions. This strain thrives optimally at a temperature of 40.0°C, suggesting a preference for warm habitats. As a chemoheterotroph, it derives its energy from organic compounds, which it likely utilizes from the soil environment in which it is typically found.↵↵The ability to sporulate is a significant trait for Bacillus species, allowing them to endure periods of nutrient scarcity and extreme environmental conditions. The soil habitat of Bacillus pseudomycoides strain AFS065668 may contribute to its ecological role in nutrient cycling and organic matter decomposition, as it can break down complex organic materials. Furthermore, the thermophilic nature suggested by its optimal growth temperature indicates that this strain may play a role in the microbial communities associated with thermally influenced soils, such as those found in geothermally active areas.↵↵Overall, Bacillus pseudomycoides strain AFS065668 exemplifies the adaptations of soil bacteria to thrive in specific thermal niches, highlighting the diverse metabolic capabilities present in soil ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 64104 NVIX00000000.1 Bac0015488 Bacillus cereus strain AFS098170 "Bacillus cereus strain AFS098170 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 25.0°C, indicating its preference for moderate ambient conditions. B. cereus is known to inhabit diverse environments, which suggests a versatile ecological adaptability that may allow it to exploit a range of substrates. ↵↵The chain arrangement of cells is characteristic of the Bacillus genus, which often contributes to its resilience and ability to form biofilms in various habitats. While specific pathogenicity traits for strain AFS098170 are not provided, the broader B. cereus species is recognized for its capacity to produce a variety of enzymes and secondary metabolites, which may play a role in nutrient acquisition and competitive interactions within its environment. ↵↵Understanding the ecological role of Bacillus cereus strain AFS098170 could yield insights into its interactions with other microorganisms and its potential applications in bioremediation or agriculture, where its growth dynamics in aerobic conditions may facilitate decomposition processes or enhance soil health. The strain's ability to thrive in multiple habitats reinforces its significance in microbial ecology, highlighting the importance of further research into its functional capabilities and environmental interactions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NVKT00000000.1 Bac0015489 Bacillus cereus strain AFS096845 "Bacillus cereus strain AFS096845 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C and has been isolated from multiple habitats, indicating its versatile adaptability to different environmental conditions.↵↵As a member of the Bacillus genus, B. cereus is known for its ability to form endospores, which allows it to survive in a variety of harsh environments. The aerobic nature of strain AFS096845 suggests that it requires oxygen for growth, which could influence its ecological distribution and interactions within its native habitats. The presence of this strain across diverse environments underscores the ecological flexibility of B. cereus and its potential role in nutrient cycling.↵↵Understanding the growth and survival characteristics of Bacillus cereus strain AFS096845 contributes to the broader knowledge of microbial ecology, particularly in how aerobic bacteria adapt to varying conditions and contribute to ecosystem dynamics. This adaptability may play a role in its interactions with other microorganisms and its impact on the biochemical processes within its habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NVLK00000000.1 Bac0015490 Bacillus cereus strain AFS096268 "Bacillus cereus strain AFS096268 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain exhibits an optimal growth temperature of 25.0°C, suggesting it thrives in moderate environmental conditions. As an aerobe, it requires oxygen for its metabolic processes, indicating its potential presence in oxygen-rich habitats. ↵↵Bacillus cereus, as a species, is known to inhabit a variety of environments, which may include soil, water, and plant surfaces, providing it with diverse ecological niches. The ability to form chains may confer advantages in certain environments, potentially influencing its interactions with other microorganisms and the surrounding ecosystem.↵↵Given its habitat diversity and aerobic nature, Bacillus cereus strain AFS096268 may play a role in nutrient cycling and organic matter decomposition within its ecological context. Its adaptability to various environments underscores the importance of this strain in maintaining microbial community dynamics and ecosystem functioning." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NVLQ00000000.1 Bac0015491 Bacillus anthracis strain AFS095574 "Bacillus anthracis strain AFS095574 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, making it resilient in various environmental conditions. This strain thrives optimally at 37.0°C and is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. Its natural habitat is predominantly soil, where it can be found in a variety of ecological niches. Additionally, Bacillus anthracis strain AFS095574 is a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments, which contributes to its adaptability and persistence in the soil ecosystem.↵↵The ability to sporulate is particularly significant, as it enables the bacterium to endure extreme conditions, including desiccation and nutrient scarcity, which can be common in soil habitats. This trait not only facilitates long-term survival but also plays a crucial role in the organism's lifecycle, allowing it to remain dormant until favorable conditions for germination occur. Understanding the ecological role of Bacillus anthracis strain AFS095574 in soil may provide insights into its interactions with other soil microbiota and its potential impact on nutrient cycling within these ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NVLX00000000.1 Bac0015492 Bacillus cereus strain AFS093598 "Bacillus cereus strain AFS093598 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0 degrees Celsius, which suggests a preference for moderate environmental conditions. The ability to grow in multiple habitats indicates a versatile ecological niche, potentially allowing it to inhabit a range of environments, including soil and various organic materials.↵↵As a member of the Bacillus genus, this strain may exhibit characteristics typical of Bacillus cereus, including the capacity for sporulation, which aids in survival under unfavorable conditions. The aerobic nature of Bacillus cereus strain AFS093598 implies that its metabolic processes require oxygen, which could influence its distribution and abundance in different ecological settings.↵↵Understanding the growth conditions and cellular characteristics of Bacillus cereus strain AFS093598 can provide insights into its potential roles in nutrient cycling and its interactions with other microorganisms in diverse ecosystems. The ability to thrive in various habitats underlines the ecological plasticity of this strain, which may contribute to its adaptability and survival in fluctuating environmental conditions. This adaptability could facilitate its role in biogeochemical processes, such as decomposition, thereby influencing ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NVMO00000000.1 Bac0015493 Bacillus cereus strain AFS092789 "Bacillus cereus strain AFS092789 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. ↵↵The habitat of Bacillus cereus strain AFS092789 is described as multiple, suggesting its adaptability to various environments, which could include soil, water, or plant-associated niches. The capacity to form chains may confer advantages in colonization or biofilm formation, facilitating survival in diverse ecological settings. ↵↵Understanding the traits of Bacillus cereus strain AFS092789 may provide valuable insights into its potential roles in biogeochemical cycles or its interactions within microbial communities. The strain's aerobic nature and environmental versatility may contribute to its significance in nutrient cycling and organic matter decomposition in ecosystems where it is present." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NVMX00000000.1 Bac0015494 Bacillus thuringiensis strain AFS089089 "Bacillus thuringiensis strain AFS089089 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may enhance its adaptability to varied ecological niches. The habitat of B. thuringiensis strain AFS089089 is noted as host-associated, suggesting a close relationship with specific hosts, potentially influencing its metabolic activities and ecological interactions.↵↵The sporulation characteristic of this strain may confer advantages in survival and persistence, especially in environments where nutrients are limited or conditions become unfavorable. As a member of the Bacillus genus, this strain likely produces a variety of bioactive compounds, which could play a role in its ecological functions, including interactions with other microorganisms and potential impacts on host organisms.↵↵Overall, the ecological implications of B. thuringiensis strain AFS089089's traits suggest it may participate in complex microbial communities, potentially contributing to nutrient cycling or influencing the dynamics of its host environment through its metabolic by-products or interactions with other microbes. Further exploration of its specific ecological roles and interactions could provide valuable insights into its function within host-associated microbiomes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NVNL00000000.1 Bac0015495 Bacillus pseudomycoides strain AFS090198 "Bacillus pseudomycoides strain AFS090198 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate, allowing it to survive in adverse environmental conditions. This strain exhibits optimal growth at a temperature of 40.0 °C and utilizes a chemoheterotrophic metabolism, indicating that it derives energy from organic compounds in its environment. ↵↵Found predominantly in soil habitats, Bacillus pseudomycoides strain AFS090198 plays a potential role in nutrient cycling and soil health, contributing to the microbial diversity of its ecosystem. Its sporulation capability not only aids in resilience against unfavorable conditions but also suggests a potential for persistence in various soil environments, where fluctuations in temperature and nutrient availability may occur. ↵↵Understanding the ecological functions of Bacillus pseudomycoides strain AFS090198 may provide insights into its interactions within the soil microbiome, particularly regarding its contributions to organic matter decomposition and soil fertility." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pseudomycoides Positive Rod No 1 40 Chemoheterotroph Mesophilic Soil Sporulating 64104 NVOY00000000.1 Bac0015496 Bacillus sp. AFS098217 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AFS098217 2033868 NVPR00000000.1 Bac0015497 Candidatus Methylomirabilis limnetica strain Zug Methylomirabilota (SeqCode) Methylomirabilia (SeqCode) Methylomirabilales (SeqCode) Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis limnetica 2033718 NVQC00000000.1 Bac0015498 Thiotrichaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Thiotrichaceae bacterium 2030882 NVTY00000000.2 Bac0015499 Alkaliphilus sp. Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Alkaliphilus Alkaliphilus sp. 1872455 NVVX00000000.1 Bac0015500 Cellvibrionales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionales bacterium 2026722 NVWE00000000.1 Bac0015501 Sphingopyxis sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis sp. 1908224 NVXM00000000.1 Bac0015502 Corynebacterium accolens strain AH4003 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens vagina 38284 NWBP00000000.1 Bac0015503 Pseudomonas donghuensis strain SVBP6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas donghuensis 1163398 NWCB00000000.1 Bac0015504 Sphingomonas spermidinifaciens strain 9NM-10 "Sphingomonas spermidinifaciens strain 9NM-10 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and is non-spore-forming. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for mesophilic environments typically found in various terrestrial or aquatic habitats. ↵↵The Gram-negative nature of S. spermidinifaciens indicates the presence of an outer membrane containing lipopolysaccharides, which may contribute to its adaptability in diverse ecological niches and its potential interactions with other microorganisms. The aerobic requirement highlights its reliance on oxygen for growth, which could limit its habitat to well-oxygenated environments. ↵↵While the specific ecological role of strain 9NM-10 remains to be fully elucidated, the traits observed in Sphingomonas species suggest a capacity for biodegradation of organic compounds. This could indicate a potential for bioremediation applications, where the bacterium may play a role in the breakdown of environmental pollutants. Overall, Sphingomonas spermidinifaciens strain 9NM-10 exemplifies the diverse physiological traits of the Sphingomonadaceae family, contributing to our understanding of microbial diversity and function in ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas spermidinifaciens Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 1141889 NWMW00000000.1 Bac0015505 Lysobacteraceae bacterium NML03-0222 NML03-0222_5 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium NML03-0222 2032581 NWQM00000000.1 Bac0015506 Lysobacteraceae bacterium NML95-0200 NML95-0200_35 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium NML95-0200 2032577 NWQQ00000000.1 Bac0015507 Lysobacteraceae bacterium NML120232 NML12-0232_3 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium NML120232 2032575 NWQS00000000.1 Bac0015508 Lysobacteraceae bacterium NML07-0707 NML07-0707_48 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacteraceae bacterium NML07-0707 2032574 NWQT00000000.1 Bac0015509 Rhizobium chutanense strain C5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium chutanense 2035448 NWSV00000000.1 Bac0015510 Sinorhizobium sp. NG07B Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. NG07B 1538174 NWTD00000000.1 Bac0015511 Sinorhizobium sp. BJ1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sp. BJ1 2035455 NWTH00000000.1 Bac0015512 Bradyrhizobium sp. Y36 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Y36 2035447 NWTI00000000.1 Bac0015513 Thalassospira marina strain CSC1P2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira marina 2048283 NWTK00000000.1 Bac0015514 Vibrio mediterranei strain 17LN0615E Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mediterranei 689 NWTN00000000.1 Bac0015515 Bifidobacterium callitrichos strain UMA51805 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium callitrichos 762209 NWTX00000000.1 Bac0015516 Sphingomonas adhaesiva strain DSM 7418 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas adhaesiva aerobic 28212 NWVC00000000.1 Bac0015517 Sphingomonas ginsenosidimutans strain KACC 14949 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas ginsenosidimutans microaerophile 862134 NWVD00000000.1 Bac0015518 Neisseria meningitidis strain INS-Nm1124 "Neisseria meningitidis strain INS-Nm1124 is a Gram-negative coccal bacterium that typically exhibits a paired arrangement, which is characteristic of the genus Neisseria. This strain thrives optimally at a temperature of 35.0°C and is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. ↵↵As a host-associated microbe, N. meningitidis strain INS-Nm1124 is adapted to living in association with its host, which may influence its growth and survival strategies. The specific habitat suggests a potential for interactions with host immune responses, although the precise implications of these interactions remain to be fully elucidated.↵↵The pairing of the cocci underlines a potential for cooperative behavior or biofilm formation, which can be significant in understanding the strain's ecological dynamics within host environments. This trait may facilitate colonization and persistence in various host niches, contributing to the complexity of its ecological interactions. Further research into the environmental conditions and host factors influencing the behavior of strain INS-Nm1124 could provide valuable insights into its role within the microbiome and its potential implications for human health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 NWXB00000000.1 Bac0015519 Cutibacterium acnes strain P15-206 "Cutibacterium acnes strain P15-206 is a Gram-positive, rod-shaped bacterium that is nonsporulating and primarily associated with host environments. This strain thrives optimally at 37.0°C, which coincides with human body temperature, suggesting its adaptation to a warm-blooded host environment. As an anaerobe, C. acnes strain P15-206 does not require oxygen for growth, indicating its ability to inhabit anaerobic niches within the host, such as hair follicles and sebaceous glands.↵↵The ecological role of Cutibacterium acnes extends beyond its presence on human skin; it is involved in the complex microbial community that contributes to skin health. While traditionally associated with conditions such as acne, the specific traits of strain P15-206 may allow for further exploration of its functional contributions to skin microbiota, including potential roles in maintaining skin homeostasis and influencing immune responses. Understanding the unique ecological dynamics of this strain could provide insights into the balance of microbial populations and their impacts on dermatological health." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 NXAR00000000.1 Bac0015520 Campylobacter sp. 113 517 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 113 2039337 NXAY00000000.1 Bac0015521 Campylobacter sp. 110 305 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 110 2039342 NXBD00000000.1 Bac0015522 Rhizobium sophoriradicis strain L101 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sophoriradicis 1535245 NXDM00000000.1 Bac0015523 Acinetobacter baumannii strain I43 "Acinetobacter baumannii strain I43 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C and is identified as a chemoheterotrophic aerobe, indicating its reliance on organic compounds for energy and its requirement for oxygen for metabolic processes. A. baumannii is known to inhabit diverse environments, which may contribute to its resilience and adaptability in various ecological niches. ↵↵The ability of A. baumannii strain I43 to utilize multiple habitats underscores its ecological versatility, allowing it to potentially occupy both clinical settings and environmental reservoirs. This adaptability may play a role in the organism’s survival under fluctuating environmental conditions and could influence its interactions within microbial communities. Understanding these traits provides insight into the ecological dynamics of A. baumannii and its potential implications in various environments, particularly in relation to its persistence in hospital-associated settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NXDV00000000.1 Bac0015524 Escherichia coli strain 2009-30 "Escherichia coli strain 2009-30 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the physiological temperature of many warm-blooded hosts. E. coli strain 2009-30 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that allows it to adapt to various environments within host-associated habitats. ↵↵The presence of this strain within host-associated ecosystems emphasizes its potential role in the complex microbial communities found in the gastrointestinal tracts of various organisms. The adaptability of E. coli strain 2009-30 to different oxygen levels may facilitate its survival and metabolic versatility in fluctuating conditions encountered within these environments. These characteristics exemplify the ecological importance of E. coli strains in maintaining gut health and influencing host-microbiome interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NXEQ00000000.1 Bac0015525 Arcobacter cryaerophilus gv. occultus strain LMG 29976 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus 28198 NXGC00000000.1 Bac0015526 Arcobacter cryaerophilus gv. crypticus strain LMG 9065 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus 28198 NXGI00000000.1 Bac0015527 Marinobacter sp. ANT_B65 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. ANT_B65 2039467 NXGV00000000.1 Bac0015528 Thalassospira lohafexi strain 139Z-12 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira lohafexi 744227 NXGX00000000.1 Bac0015529 Klebsiella quasipneumoniae strain 46 "Klebsiella quasipneumoniae strain 46 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is host-associated, suggesting a close relationship with a specific host organism, which may play a significant role in its ecological niche and survival strategies. ↵↵Klebsiella species, including K. quasipneumoniae, are commonly found in various environments, but their host-associated nature implies a potential adaptation to the physiological conditions within the host, such as temperature, pH, and nutrient availability. The facultative anaerobic metabolism of this strain allows it to utilize different metabolic pathways depending on the availability of oxygen, thereby enhancing its adaptability in fluctuating environments. ↵↵As a member of the Enterobacteriaceae family, K. quasipneumoniae strain 46 may contribute to the complex microbial communities present in its host, potentially influencing the host's health and microbiome dynamics. Understanding the specific interactions between this strain and its host could provide insights into its ecological role and the broader implications for host-associated microbiota. Further research is warranted to elucidate the precise relationships and functional contributions of K. quasipneumoniae strain 46 within its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae Negative Rod Facultative anaerobe Mesophilic HostAssociated Free living 1463165 NXHG00000000.1 Bac0015530 Curtobacterium sp. 'Ferrero' Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. 'Ferrero' 2033654 NXIA00000000.1 Bac0015531 Malaciobacter halophilus strain DSM 18005 "Malaciobacter halophilus strain DSM 18005 is a Gram-negative, rod-shaped bacterium classified as a microaerophile, indicating its requirement for oxygen at low concentrations for optimal growth. This strain exhibits a unique adaptation to environments with elevated salinity, suggesting its potential role in saline ecosystems. The microaerophilic nature of M. halophilus implies that it may thrive in conditions where oxygen levels are restricted, such as in stratified water bodies or specific niches within salt marshes.↵↵The physiological characteristics of M. halophilus, particularly its rod shape and Gram-negative cell wall structure, may contribute to its survival in competitive microbial communities. The adaptability to microaerophilic conditions could allow this strain to occupy ecological niches that are less accessible to strictly aerobic or anaerobic microorganisms. Furthermore, the identification of M. halophilus strain DSM 18005 may provide insights into the metabolic pathways employed by halophilic bacteria under microaerobic conditions, which are crucial for understanding biogeochemical cycles in saline environments.↵↵Overall, the traits of Malaciobacter halophilus strain DSM 18005 highlight its potential importance in microbiological studies focused on saline habitats, where understanding the interactions and adaptations of microbial life can offer broader implications for ecosystem functioning and resilience." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter halophilus Gram-negative rod motile microaerophile 197482 NXIF00000000.1 Bac0015532 Arcobacter defluvii strain CECT 7697 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter defluvii 873191 NXIH00000000.1 Bac0015533 Arcobacter cloacae strain CECT 7834 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter cloacae 1054034 NXII00000000.1 Bac0015534 Providencia rettgeri strain PR002 "Providencia rettgeri strain PR002 is a Gram-negative, non-sporulating rod-shaped bacterium that demonstrates facultative anaerobic metabolism. This strain operates optimally at a temperature of 37.0°C and relies on chemoheterotrophic processes for energy acquisition. Its capability to thrive in multiple habitats indicates a versatile ecological niche, allowing it to adapt to varying environmental conditions.↵↵As a facultative anaerobe, P. rettgeri strain PR002 can utilize oxygen when it is available, but it also possesses the metabolic flexibility to grow in environments devoid of oxygen. This trait may enable it to inhabit diverse ecological niches, including soil, water, and possibly within the intestinal tracts of animals, where varying oxygen levels are prevalent. ↵↵The adaptability of Providencia rettgeri strain PR002 to different habitats and its metabolic versatility highlight its potential role in nutrient cycling and interactions within microbial communities. Understanding the specific ecological contributions of this strain can provide insights into its functional significance in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 587 NXKD00000000.1 Bac0015535 Helicobacter sp. MIT 99-10781 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. MIT 99-10781 1332285 NXLM00000000.1 Bac0015536 Helicobacter sp. MIT 01-3238 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. MIT 01-3238 398627 NXLN00000000.1 Bac0015537 Helicobacter didelphidarum strain MIT 17-337 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter didelphidarum 2040648 NXLQ00000000.1 Bac0015538 Helicobacter cholecystus strain ATCC 700242 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cholecystus 45498 NXLU00000000.1 Bac0015539 Helicobacter brantae strain MIT 04-9366 _49_34346.5492 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter brantae microaerophile 375927 NXLV00000000.1 Bac0015540 Helicobacter anseris strain MIT 04-9362 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter anseris microaerophile 375926 NXLX00000000.1 Bac0015541 Streptococcus salivarius strain MIT 14-1770-C1 "Streptococcus salivarius strain MIT 14-1770-C1 is a Gram-positive, nonsporulating cocci that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which is characteristic of many members of the Streptococcus genus. ↵↵S. salivarius strains are primarily host-associated, suggesting that they inhabit specific niches within their host, possibly contributing to the microbial community of the human oral cavity and gastrointestinal tract. While S. salivarius is known for its role in oral health and its potential as a probiotic, the specific implications of strain MIT 14-1770-C1 in health and disease remain to be fully elucidated. ↵↵Understanding the physiological traits of Streptococcus salivarius strain MIT 14-1770-C1 may provide insights into its ecological role within the host microbiome and how it interacts with other microbial species. The facultative anaerobic nature of this strain may also enable it to survive in varying oxygen levels, potentially influencing its competitive advantage in diverse environments within the host. Further studies could reveal its functional contributions to the host's microbial ecosystem and its potential applications in oral health management." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 NXMB00000000.1 Bac0015542 Butyrivibrio fibrisolvens strain INBov1 "Butyrivibrio fibrisolvens strain INBov1 is a curved rod-shaped, anaerobic bacterium found in the rumen of ruminant animals. Despite its structural characteristics suggesting a Gram-positive classification, this strain exhibits a Gram-negative staining response, indicating a complex cell wall structure. As a member of the diverse microbial community within the rumen, B. fibrisolvens plays a significant role in the fermentation processes essential for the digestion of fibrous plant materials.↵↵The anaerobic nature of B. fibrisolvens strain INBov1 allows it to thrive in the low-oxygen environment of the rumen, where it contributes to the breakdown of complex carbohydrates and the production of short-chain fatty acids, particularly butyrate. This metabolic activity is crucial for the energy supply of the host animal and influences overall rumen health and function.↵↵In addition to its role in digestion, the unique staining characteristics of B. fibrisolvens strain INBov1 may provide insights into the evolutionary adaptations of microbes in anaerobic environments, where traditional Gram-staining techniques may not accurately reflect the cell wall properties. Understanding these traits can enhance our knowledge of microbial diversity and function in the rumen ecosystem, potentially informing strategies for improving livestock nutrition and health through microbiome management." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio fibrisolvens Structurally positive but stains negative Curved rod Yes Anaerobe rumen 831 NXNG00000000.1 Bac0015543 Phycisphaeraceae bacterium Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Phycisphaeraceae bacterium 2026777 NYZC00000000.1 Bac0015544 Bacillus methanolicus PB1 "Bacillus methanolicus PB1 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in soil environments. This organism is characterized as a chemoheterotroph, utilizing organic compounds as its energy source, which allows it to adapt to diverse nutrient conditions. Optimal growth occurs at a temperature of 50.0°C, indicating a preference for thermophilic conditions. Furthermore, B. methanolicus PB1 is classified as a facultative anaerobe, permitting it to survive in both aerobic and anaerobic environments, a trait that enhances its ecological versatility.↵↵The sporulating capability of B. methanolicus PB1 suggests a robust survival strategy, enabling it to endure adverse environmental conditions, such as nutrient depletion and extreme temperatures. This resilience may contribute to its role in soil microbiomes, where it could participate in organic matter decomposition and nutrient cycling. The specific adaptations of B. methanolicus PB1 to elevated temperatures and varied oxygen availability highlight its potential significance in biotechnological applications, particularly in processes that require high-temperature stability or in the development of biofuels from organic waste. Understanding the ecological roles and metabolic pathways of this bacterium could provide insights into its contributions to soil health and microbial diversity in thermophilic habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus methanolicus Positive Rod No 1 Facultative anaerobe 50 Chemoheterotroph Mesophilic Soil Sporulating 997296 NZ_AFEU01000007.1 Bac0015545 Methanothermobacter sp. CaT2 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter sp. CaT2 866790 NZ_AP011952.1 Bac0015546 Thiolapillus brandeum strain Hiromi 1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Sedimenticolaceae Thiolapillus Thiolapillus brandeum 1076588 NZ_AP012274.1 Bac0015547 Sulfuritalea hydrogenivorans sk43H strain DSM 22779 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Sulfuritalea Sulfuritalea hydrogenivorans anaerobic 748811 NZ_AP012547.1 Bac0015548 Mycobacterium avium subsp. hominissuis TH135 "Mycobacterium avium subsp. hominissuis TH135 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement. This subspecies is classified as a chemoorganotroph, indicating that it derives energy from organic compounds, which is particularly relevant to its habitat that is host-associated. M. avium subsp. hominissuis TH135 thrives optimally at a temperature of 37.0°C, suggesting an adaptation to the warm environments found within a host organism. ↵↵As a microaerophile, this bacterium requires a reduced level of oxygen for its metabolic processes, which may reflect its ecological niche within host tissues where oxygen concentrations can be lower than atmospheric levels. The specific interactions of M. avium subsp. hominissuis TH135 with its host environment remain to be fully explored, but its traits suggest a potential role in the complex microbiota associated with various host species. Given its chemoorganotrophic lifestyle and microaerophilic requirements, M. avium subsp. hominissuis TH135 may contribute to the nutrient cycling within the host's microbiome, highlighting the intricate relationships between microbial inhabitants and their hosts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1229671 NZ_AP012555.1 Bac0015549 Wolbachia endosymbiont of Cimex lectularius strain wCle Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Cimex lectularius 246273 NZ_AP013028.1 Bac0015550 Endosymbiont of Bathymodiolus septemdierum str. Myojin knoll Pseudomonadati Pseudomonadota Gammaproteobacteria Bathymodiolus septemdierum thioautotrophic gill symbiont 1303921 NZ_AP013042.1 Bac0015551 Tannerella forsythia KS16 "Tannerella forsythia KS16 is a Gram-negative, anaerobic bacterium known for its role within the human oral microbiome. This microbe is typically found in subgingival sites, where it plays a crucial role in the complex microbial community associated with periodontal health and disease. As an anaerobe, T. forsythia KS16 thrives in environments devoid of oxygen, which is characteristic of deep periodontal pockets where oxygen levels are significantly lower compared to other oral sites.↵↵The Gram-negative nature of T. forsythia KS16 indicates that it possesses an outer membrane containing lipopolysaccharides, which can be important in the organism's interactions with the host immune system and its ability to establish itself in the oral cavity. The metabolic pathways utilized by this bacterium allow it to ferment available substrates, contributing to the overall ecological balance within the oral microbiome. ↵↵Moreover, T. forsythia KS16's presence in biofilms may influence the stability and composition of microbial communities, potentially affecting ecological dynamics in both healthy and diseased states. Understanding the specific roles of T. forsythia KS16 in these environments may provide insights into the complex interplay between microbial inhabitants and host factors in periodontal disease. This highlights the importance of anaerobic bacteria in maintaining the health of oral ecosystems while also contributing to dysbiotic conditions when their balance is disrupted." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella forsythia Negative Anaerobe 1307833 NZ_AP013045.1 Bac0015552 Bacillus sp. OxB-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. OxB-1 98228 NZ_AP013294.1 Bac0015553 Nonlabens marinus S1-08 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens marinus 1454201 NZ_AP014548.1 Bac0015554 Serpentinimonas maccroryi strain B1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Serpentinimonas Serpentinimonas maccroryi 1458426 NZ_AP014569.1 Bac0015555 Caballeronia cordobensis strain RPE67 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia cordobensis 1353886 NZ_AP014576.1 Bac0015556 Winogradskyella sp. PG-2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella sp. PG-2 754409 NZ_AP014583.1 Bac0015557 Prevotella intermedia strain OMA14 "Prevotella intermedia strain OMA14 is a Gram-negative, rod-shaped anaerobic bacterium commonly found in diverse habitats, including the gingival sulci, oral cavity, gut, rumen, and both subgingival and supragingival dental biofilms. This strain thrives in oxygen-depleted environments, reflecting its anaerobic nature, and is associated with various niches within the human body as well as in ruminant digestive systems. ↵↵In the oral cavity, Prevotella intermedia strain OMA14 contributes to the complex microbial communities present in dental plaque, particularly in subgingival areas where it can form biofilms alongside other microorganisms. Its presence in the urogenital tract suggests a role in the maintenance of microbial diversity in these environments. ↵↵The ability of Prevotella intermedia strain OMA14 to inhabit both the gut and oral cavity highlights its potential involvement in inter-site microbial interactions and the overall dynamics of the human microbiome. This adaptability to different ecological niches may also reflect its evolutionary strategies for survival and persistence in anaerobic conditions. Understanding the specific ecological roles and interactions of this strain could provide insights into its contributions to health and disease in the respective habitats it colonizes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_AP014597.1 Bac0015558 Thioploca ingrica Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Thioploca Thioploca ingrica 40754 NZ_AP014633.1 Bac0015559 Bifidobacterium longum strain 105-A "Bifidobacterium longum strain 105-A is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in clusters, pairs, or singly. This anaerobic microbe thrives optimally at a temperature of 37.0°C, making it well-suited for growth in the warm environments of the host gastrointestinal tract. Its habitat is categorized as host-associated, indicating a symbiotic relationship with its host, particularly in the human microbiome.↵↵Bifidobacterium longum strains are known for their potential benefits to gut health, including the fermentation of carbohydrates and the production of beneficial metabolites. As an anaerobe, strain 105-A may contribute to maintaining a balanced intestinal ecosystem by outcompeting pathogenic microorganisms in low-oxygen environments. ↵↵The clustering and pairing of cells may facilitate cooperative interactions, enhancing the strain's stability and functionality within the gut. This microbe's ability to thrive in the host's digestive system suggests a role in the modulation of the host's immune response and the maintenance of gut homeostasis. Overall, Bifidobacterium longum strain 105-A exemplifies the complex interactions within the gut microbiome, highlighting its potential significance in promoting human health through its metabolic activities." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 NZ_AP014658.1 Bac0015560 Paucilactobacillus hokkaidonensis JCM 18461 strain LOOC260 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus hokkaidonensis 1193095 NZ_AP014681.1 Bac0015561 Asaia bogorensis NBRC 16594 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Asaia Asaia bogorensis 1231624 NZ_AP014690.1 Bac0015562 Methylobacterium aquaticum strain MA-22A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium aquaticum 270351 NZ_AP014704.1 Bac0015563 Methylorubrum populi strain P-1M "Methylorubrum populi strain P-1M is a Gram-negative, rod-shaped bacterium that displays a cellular arrangement characterized by pairs and singles. This strain is a methylotroph, indicating its capability to utilize methanol and related compounds as its primary energy source. It thrives optimally at a temperature of 20.0°C and requires oxygen for its metabolic processes, classifying it as an aerobic organism.↵↵The habitat of Methylorubrum populi strain P-1M is described as host-associated, suggesting a potential relationship with specific host organisms, although the nature of this association is not delineated in the known traits. The ability to metabolize methanol may confer advantages in nutrient-rich environments where such compounds are readily available, potentially facilitating interactions with other microbial communities or host organisms.↵↵Understanding the physiological traits of Methylorubrum populi strain P-1M provides insight into its ecological role, particularly in environments where methanol is present, such as in association with decomposing organic matter or in specific plant or animal hosts. The strain may play a significant role in carbon cycling within its habitat, contributing to the transformation of methanol and influencing the overall microbial dynamics in host-associated ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum populi Negative Rod No 1 2 Aerobe 20 Methylotroph Mesophilic HostAssociated Free living Pairs - Singles 223967 NZ_AP014809.1 Bac0015564 Bacillus anthracis strain Shikan-NIID "Bacillus anthracis strain Shikan-NIID is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate, which enables it to endure harsh environmental conditions. This strain thrives optimally at a temperature of 37.0°C and exhibits a facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. As a chemoheterotroph, B. anthracis strain Shikan-NIID utilizes organic compounds as its energy source, which is consistent with its habitat in soil where organic matter is plentiful.↵↵The sporulation capability of this strain is particularly significant, as it aids in its survival in various ecological niches, especially in nutrient-limited environments. The presence of B. anthracis in soil suggests its potential role in nutrient cycling and its interaction with other microbial communities. Given its environmental persistence and metabolic versatility, this strain may contribute to the complex dynamics of soil microbiomes, influencing the availability of nutrients and the overall health of the ecosystem." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NZ_AP014834.1 Bac0015565 Bacillus thuringiensis serovar tolworthi strain Pasteur Institute "Bacillus thuringiensis serovar tolworthi strain Pasteur Institute is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a facultative anaerobe. This strain is typically found in host-associated environments, indicating a potential relationship with specific organisms or ecosystems. ↵↵The Gram-positive nature of B. thuringiensis serovar tolworthi suggests a thick peptidoglycan layer in its cell wall, which could be relevant for its survival and interaction with host organisms. The rod shape is a common morphological characteristic among Bacillus species, which often contributes to their ability to form endospores, a feature that enhances their resilience under adverse conditions.↵↵As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, providing it with an adaptive advantage in varying environments where oxygen levels may fluctuate. Its host-associated habitat might imply specific adaptations that facilitate interactions with host organisms, potentially including the production of bioactive compounds or proteins that could influence host physiology.↵↵The ability of B. thuringiensis serovar tolworthi to sporulate further underscores its ecological resilience, as spore formation allows the bacterium to endure harsh conditions and remain viable for extended periods. Understanding the ecological roles and interactions of this strain within its habitat can provide insights into its potential applications in biotechnology and agriculture, particularly in pest management strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_AP014866.1 Bac0015566 Rothia mucilaginosa strain NUM-Rm6536 "Rothia mucilaginosa strain NUM-Rm6536 is a Gram-positive, non-sporulating cocci that exhibits microaerophilic growth requirements, indicating it thrives in environments with reduced oxygen levels. This strain is host-associated, suggesting a potential symbiotic relationship or colonization within a specific host organism. ↵↵The coccoid morphology is characteristic of the genus Rothia, which is known for its presence in various human microbiomes, particularly in oral and respiratory environments. The microaerophilic nature of NUM-Rm6536 emphasizes its adaptation to environments where oxygen is present but at lower concentrations than atmospheric levels, which may influence its metabolic pathways and interactions with host tissues.↵↵Due to its association with host organisms, R. mucilaginosa strain NUM-Rm6536 could play a role in maintaining microbial balance and could be involved in the modulation of host immune responses. Understanding its ecological niche and physiological adaptations may provide insights into its potential benefits or roles in human health, particularly in the context of oral microbiota and respiratory health. This strain exemplifies the intricate relationships that bacteria can form with their hosts, highlighting the importance of microbial diversity in maintaining homeostasis within specific ecological niches." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa Positive Cocci Yes 1 1 Microaerophile Mesophilic HostAssociated Free living Nonsporulating 43675 NZ_AP014938.1 Bac0015567 Lysobacter enzymogenes strain M497-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter enzymogenes soil 69 NZ_AP014940.1 Bac0015568 Staphylococcus schleiferi strain TSCC54 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus schleiferi milk 1295 NZ_AP014944.1 Bac0015569 Variibacter gotjawalensis strain GJW-30 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Variibacter Variibacter gotjawalensis 1333996 NZ_AP014946.1 Bac0015570 Pseudomonas putida strain KF715 "Pseudomonas putida strain KF715 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is nonsporulating and exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, Pseudomonas putida strain KF715 relies on organic compounds as its primary energy source, which is consistent with its typical habitats of soil and wastewater.↵↵The adaptability of Pseudomonas putida strain KF715 to various environmental conditions, particularly in nutrient-rich environments such as wastewater, highlights its potential role in bioremediation processes. This bacterium can utilize a wide range of organic pollutants, making it a candidate for applications in the degradation of toxic compounds and the restoration of contaminated environments. Its metabolic versatility and resilience in diverse ecosystems underscore its significance in microbial ecology and environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_AP015029.1 Bac0015571 Leptolyngbya sp. NIES-3755 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. NIES-3755 1752064 NZ_AP017308.1 Bac0015572 Aneurinibacillus soli strain CB4 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Aneurinibacillus Aneurinibacillus soli 1500254 NZ_AP017312.1 Bac0015573 Corynebacterium suranareeae strain N24 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium suranareeae 2506452 NZ_AP017369.1 Bac0015574 Lactococcus formosensis strain 122061 "Lactococcus formosensis strain 122061 is a Gram-positive, facultative anaerobic coccus that primarily inhabits the intestines. This microbe is characterized by its spherical shape, which is typical of cocci, and it thrives in environments with varying oxygen levels, indicating a versatile metabolic capacity. The presence of L. formosensis in the intestinal tract suggests its potential role in gut microbiota dynamics, possibly contributing to the maintenance of intestinal health and homeostasis.↵↵As a member of the Lactococcus genus, this strain may be involved in various fermentation processes, which can influence nutrient availability and microbial interactions within the gut ecosystem. The facultative anaerobic nature of L. formosensis suggests that it can adapt to both aerobic and anaerobic conditions, which may enhance its survival and functionality in the diverse microbial landscape of the intestines. ↵↵Understanding the specific interactions of L. formosensis strain 122061 within the intestinal microbiome could provide insights into its potential beneficial effects, such as modulation of local immune responses or competitive inhibition of pathogenic organisms. Further research could elucidate the specific roles that this strain plays in gut health and its contributions to the overall microbial community structure." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus formosensis Positive Cocci Facultative anaerobe intestines 1281486 NZ_AP017373.1 Bac0015575 Stanieria sp. NIES-3757 Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Stanieria Stanieria sp. NIES-3757 1807358 NZ_AP017376.1 Bac0015576 Desulfovibrio ferrophilus strain IS5 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio ferrophilus 241368 NZ_AP017378.1 Bac0015577 Moraxella osloensis strain KMC41 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_AP017381.1 Bac0015578 Candidatus Endomicrobiellum trichonymphae Pseudomonadati Elusimicrobiota Endomicrobiia Endomicrobiales Endomicrobiaceae Candidatus Endomicrobiellum Candidatus Endomicrobiellum trichonymphae HostAssociated 1408204 NZ_AP017459.1 Bac0015579 Candidatus Endomicrobiellum trichonymphae strain Rs-D1 Pseudomonadati Elusimicrobiota Endomicrobiia Endomicrobiales Endomicrobiaceae Candidatus Endomicrobiellum Candidatus Endomicrobiellum trichonymphae HostAssociated 1408204 NZ_AP017460.1 Bac0015580 Mesorhizobium loti "Mesorhizobium loti is a Gram-negative, rod-shaped bacterium primarily recognized for its role in symbiotic nitrogen fixation in legumes. This microbe is classified as an aerobic organism, indicating its requirement for oxygen to sustain metabolic processes. M. loti is found in diverse habitats, suggesting a versatile ecological adaptability that allows it to thrive in various environmental conditions.↵↵The ability of M. loti to engage in symbiosis with specific leguminous plants, such as Lotus species, underscores its significance in promoting soil fertility through nitrogen fixation. This process not only benefits the host plant by providing essential nutrients but also contributes to the overall health of the ecosystem by enhancing soil nitrogen levels. ↵↵Additionally, the broad habitat range of M. loti hints at its potential role in various ecological niches, possibly influencing plant community dynamics and soil microbiome interactions. Understanding the ecological functions and adaptations of M. loti can provide insights into sustainable agricultural practices and the development of biofertilizers aimed at improving crop yields in nitrogen-deficient soils." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 381 NZ_AP017606.1 Bac0015581 Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 "Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. This strain is classified as an aerobe, indicating that it requires oxygen for growth, and it thrives optimally at a temperature of 32.0°C. As a chemoorganotroph, M. ulcerans subsp. shinshuense utilizes organic compounds as its energy source, which suggests a potential dependency on organic matter present in its habitat.↵↵The habitat of this strain is described as host-associated, which implies a close relationship with living hosts, potentially affecting its ecological niche and interactions within microbial communities. Understanding this association is crucial, as it may influence the strain's metabolic pathways and adaptation mechanisms necessary for survival and growth in host environments.↵↵In the context of its ecological role, Mycobacterium ulcerans subsp. shinshuense may contribute to the dynamics of microbial populations in host-associated environments, potentially influencing the health of the host and the overall microbial balance. Further research into the physiological and ecological implications of this strain could provide insights into its interactions with host organisms and its role in the microbiome." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans Positive Rod No 1 1 Aerobe 32 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1809 NZ_AP017624.1 Bac0015582 Pleomorphomonas sp. SM30 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Pleomorphomonadaceae Pleomorphomonas Pleomorphomonas sp. SM30 1885025 NZ_AP017626.1 Bac0015583 Helicobacter pylori strain ATCC 43504 "Helicobacter pylori strain ATCC 43504 is a Gram-negative bacterium characterized by its spiral shape (spirilla) and typically exists as single cells rather than in clusters. This strain thrives at an optimal temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, likely reflecting its association with the human gastric environment. H. pylori is microaerophilic, indicating that it requires reduced levels of oxygen for growth, which is consistent with the low-oxygen conditions found in the stomach lining.↵↵The ability of H. pylori to survive in the acidic environment of the stomach, coupled with its unique morphological features, contributes to its ecological niche as a resident bacterium in the gastric mucosa of humans. This distinct adaptation allows H. pylori to persist in a host-associated environment where it can interact with the host's immune system and gastric physiology. Understanding the growth requirements and morphological characteristics of H. pylori strain ATCC 43504 can provide insights into its ecological role and potential interactions within the gastrointestinal microbiome, highlighting the complex dynamics of host-microbe relationships in human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_AP017632.1 Bac0015584 Streptococcus sp. NPS 308 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. NPS 308 1902136 NZ_AP017652.1 Bac0015585 Sphingobium cloacae strain JCM 10874 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium cloacae 120107 NZ_AP017655.1 Bac0015586 Mycoplasmopsis bovigenitalium strain HAZ596 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovigenitalium 2112 NZ_AP017902.1 Bac0015587 Thermus thermophilus strain TMY "**Thermus thermophilus strain TMY** is a Gram-negative bacterium characterized by its specialized habitat and aerobic metabolism. This thermophilic organism thrives at an optimal temperature of 0.0°C, indicating its adaptation to cold environments, which is somewhat atypical for thermophiles typically associated with high-temperature habitats. ↵↵As an aerobic microbe, T. thermophilus strain TMY requires oxygen for its metabolic processes, suggesting that it plays a significant role in biogeochemical cycles in its natural environment. Its specialized habitat may involve extreme or niche thermal conditions where few microorganisms can survive, potentially influencing local microbial community dynamics and nutrient cycling. ↵↵The unique combination of its Gram-negative cell wall structure and its thermophilic nature allows T. thermophilus strain TMY to possess distinct biochemical pathways, which could be harnessed for biotechnological applications, particularly in processes requiring stability at low temperatures. This strain exemplifies the diverse adaptations of microorganisms to environmental extremes, highlighting the evolutionary significance of metabolic versatility in extreme habitats." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus Negative NA NA 1 2 Aerobe 0 Thermophilic Specialized 274 NZ_AP017921.1 Bac0015588 Synechococcus sp. NIES-970 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus [Synechococcus] sp. NIES-970 1827144 NZ_AP017960.1 Bac0015589 Fusobacterium varium strain Fv113-g1 "Fusobacterium varium strain Fv113-g1 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits anaerobic growth and thrives optimally at 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, positioning it within a niche that likely involves the degradation of complex substrates in various habitats. ↵↵The anaerobic nature of F. varium strain Fv113-g1 suggests its ecological role may be significant in environments where oxygen is limited, such as in the human gut or in other anaerobic ecosystems. Its presence in multiple habitats indicates a degree of versatility, which could facilitate the breakdown of organic matter in diverse microbial communities.↵↵Understanding the metabolic capabilities of F. varium strain Fv113-g1 contributes to a broader comprehension of anaerobic microbial processes, particularly in nutrient cycling and the maintenance of ecosystem dynamics in low-oxygen environments. This strain's ability to thrive under specific temperature and oxygen conditions provides insights into its potential interactions with other microorganisms and its role in the ecological balance of its habitat." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium Negative Rod No 1 Anaerobe 37 Chemoheterotroph Multiple Nonsporulating 856 NZ_AP017968.1 Bac0015590 Limosilactobacillus fermentum strain MTCC 25067 "Limosilactobacillus fermentum strain MTCC 25067 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments. It is found in a variety of habitats, suggesting a versatile ecological role that may contribute to its adaptability in diverse microbial communities.↵↵The rod shape and chain arrangement of L. fermentum strain MTCC 25067 are characteristic of many lactic acid bacteria, which are known for their role in fermentation processes. This bacterium's facultative anaerobic metabolism allows it to thrive in fluctuating oxygen conditions, making it a suitable candidate for various applications in food fermentation and probiotic formulations.↵↵Given its presence in multiple habitats, Limosilactobacillus fermentum strain MTCC 25067 may play an important role in the microbiota of fermented foods and the gastrointestinal tract of humans and animals. Its ability to ferment carbohydrates could enhance the nutritional profile of food products while potentially supporting gut health through the modulation of microbiota dynamics. Thus, this strain not only represents a valuable resource for industrial microbiology but could also contribute to our understanding of microbial interactions in complex ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 NZ_AP017973.1 Bac0015591 Prevotella melaninogenica strain GAI 07411 "Prevotella melaninogenica strain GAI 07411 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. As a member of the genus Prevotella, this strain is adapted to a habitat where it plays a role in the microbial communities of the host, likely contributing to various biochemical processes. ↵↵Being anaerobic, Prevotella melaninogenica strain GAI 07411 requires environments devoid of oxygen for optimal growth and survival. This characteristic aligns with the ecological niches commonly inhabited by Prevotella species, which are often found in the mucosal surfaces of mammals, including the oral cavity and gastrointestinal tract. The ability to exist in such niches suggests that this strain may engage in symbiotic relationships with its host, potentially influencing metabolic pathways and immune responses.↵↵Overall, the specific adaptations of Prevotella melaninogenica strain GAI 07411 to anaerobic and host-associated environments underscore its potential role in maintaining a balanced microbiota, which is essential for the health of the host organism. Further investigation into this strain may reveal insights into its functional contributions to host physiology and its interactions within complex microbial ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica Negative Rod No 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 28132 NZ_AP018050.1 Bac0015592 Burkholderia stabilis strain FERMP-21014 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia stabilis Yes heart; liver; lung; lungs 95485 NZ_AP018113.1 Bac0015593 Mycoavidus cysteinexigens strain B1EB "Mycoavidus cysteinexigens strain B1EB is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This strain, characterized by its distinct morphology and metabolic requirements, is adapted to environments where oxygen is readily available, allowing it to efficiently utilize aerobic respiration for energy production. ↵↵The Gram-negative classification indicates that Mycoavidus cysteinexigens strain B1EB possesses a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various environments. The rod shape is a common feature among many bacteria, facilitating motility and nutrient uptake in aerobic habitats. ↵↵As an aerobic organism, Mycoavidus cysteinexigens strain B1EB likely plays a role in the degradation of organic materials in oxygen-rich environments, potentially contributing to nutrient cycling. This trait suggests that it may have ecological significance in biogeochemical processes, particularly in the breakdown of sulfur-containing compounds, given its species name, which implies a possible association with cysteine metabolism. Understanding the metabolic capabilities and ecological role of this strain could provide insights into its potential applications in biotechnology or environmental microbiology, especially in the context of sulfur management and organic waste degradation." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Mycoavidus Mycoavidus cysteinexigens Gram-negative rod non-motile aerobic 1553431 NZ_AP018150.1 Bac0015594 Mycobacterium shigaense strain JCM 32072 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium shigaense 722731 NZ_AP018164.1 Bac0015595 Calothrix sp. NIES-2098 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. NIES-2098 1954171 NZ_AP018172.1 Bac0015596 Anabaenopsis circularis NIES-21 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nodulariaceae Anabaenopsis Anabaenopsis circularis 1085406 NZ_AP018175.1 Bac0015597 Calothrix sp. NIES-2100 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix sp. NIES-2100 1954172 NZ_AP018178.1 Bac0015598 Nostoc carneum NIES-2107 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc carneum 1973483 NZ_AP018181.1 Bac0015599 Nostoc sp. NIES-2111 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. NIES-2111 1973475 NZ_AP018184.1 Bac0015600 Scytonema sp. HK-05 Bacillati Cyanobacteriota Cyanophyceae Nostocales Scytonemataceae Scytonema Scytonema sp. HK-05 1137095 NZ_AP018194.1 Bac0015601 Leptolyngbya boryana NIES-2135 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya boryana 1973484 NZ_AP018203.1 Bac0015602 Calothrix brevissima NIES-22 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix brevissima 1973478 NZ_AP018207.1 Bac0015603 Anabaena variabilis NIES-23 "Anabaena variabilis NIES-23 is a Gram-negative, filamentous cyanobacterium characterized by its unique arrangement of cells in single filaments. This organism is heterotrophic, relying on organic compounds for its energy needs, which distinguishes it from many other cyanobacteria that primarily utilize photosynthesis. Anabaena variabilis NIES-23 is classified as an aerobe, indicating that it requires oxygen for its metabolic processes, further emphasizing its adaptability to various environments.↵↵The habitat of Anabaena variabilis NIES-23 is diverse, suggesting that it can thrive in multiple ecological niches. This adaptability may be linked to its filamentous structure, which can enhance nutrient acquisition and facilitate the colonization of different substrates. The ability to form single filaments may also play a role in its survival strategies, potentially allowing for efficient dispersal in aquatic environments where it is commonly found.↵↵Furthermore, the filamentous morphology of Anabaena variabilis NIES-23 could contribute to its ecological role in nutrient cycling within its habitats. By occupying a unique niche as a heterotroph, it may interact with other microbial communities, influencing the dynamics of organic matter decomposition and nutrient availability. This interaction highlights the importance of Anabaena variabilis NIES-23 in maintaining the balance of microbial ecosystems." Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Trichormus Trichormus variabilis Negative Filamentous Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Filaments - Singles 264691 NZ_AP018216.1 Bac0015604 Nostoc linckia NIES-25 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc linckia 1091006 NZ_AP018222.1 Bac0015605 Calothrix parasitica NIES-267 Bacillati Cyanobacteriota Cyanophyceae Nostocales Calotrichaceae Calothrix Calothrix parasitica 1973488 NZ_AP018227.1 Bac0015606 Fremyella diplosiphon NIES-3275 Bacillati Cyanobacteriota Cyanophyceae Nostocales Rivulariaceae Microchaete Microchaete diplosiphon 1197 NZ_AP018233.1 Bac0015607 Scytonema sp. NIES-4073 Bacillati Cyanobacteriota Cyanophyceae Nostocales Scytonemataceae Kalymmatonema Kalymmatonema gypsitolerans 3452870 NZ_AP018264.1 Bac0015608 Chondrocystis sp. NIES-4102 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Chroococcaceae Chondrocystis Chondrocystis sp. NIES-4102 2005460 NZ_AP018282.1 Bac0015609 Fischerella sp. NIES-4106 Bacillati Cyanobacteriota Cyanophyceae Nostocales Hapalosiphonaceae Fischerella Fischerella sp. NIES-4106 2005456 NZ_AP018298.1 Bac0015610 Aulosira laxa NIES-50 Bacillati Cyanobacteriota Cyanophyceae Nostocales Fortieaceae Aulosira Aulosira laxa 1541988 NZ_AP018307.1 Bac0015611 Sphaerospermopsis kisseleviana NIES-73 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Sphaerospermopsis Sphaerospermopsis kisseleviana 1973480 NZ_AP018314.1 Bac0015612 Dolichospermum compactum NIES-806 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Dolichospermum Dolichospermum compactum 1973481 NZ_AP018316.1 Bac0015613 Raphidiopsis curvata NIES-932 Bacillati Cyanobacteriota Cyanophyceae Nostocales Aphanizomenonaceae Raphidiopsis Raphidiopsis curvata 1973482 NZ_AP018317.1 Bac0015614 Methanothermobacter sp. EMTCatA1 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter sp. EMTCatA1 2017966 NZ_AP018336.1 Bac0015615 Bacillus anthracis strain CZC5 "Bacillus anthracis strain CZC5 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive as a chemoheterotroph, utilizing organic compounds as its energy source. This strain exhibits optimal growth at a temperature of 37.0°C, which aligns with the physiological temperatures found in various mammalian hosts. As a facultative anaerobe, it can metabolize in both the presence and absence of oxygen, enhancing its adaptability to diverse environmental conditions.↵↵Bacillus anthracis, the causative agent of anthrax, is primarily found in soil, where it can persist in a spore form, allowing for long-term survival in harsh conditions. The sporulation capability of strain CZC5 is a critical trait that contributes to its resilience and potential for dissemination in the environment. ↵↵Understanding the ecological role of Bacillus anthracis strain CZC5 in soil ecosystems may provide insights into its interactions with other soil microorganisms and its role in nutrient cycling. The ability to form spores not only aids in its survival but also suggests a possible involvement in the dynamics of microbial communities in soil, where it may contribute to the breakdown of organic matter and the recycling of nutrients. This ecological perspective highlights the importance of studying microbial traits within their environmental context to better understand their functional roles in ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NZ_AP018444.1 Bac0015616 Melissococcus plutonius strain DAT561 "Melissococcus plutonius strain DAT561 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolism and thrives in anaerobic conditions. This strain has an optimal growth temperature of 35.0 °C, suggesting it is well-suited to environments that provide warmth, potentially aligning with its natural habitats. While specific ecological niches are not detailed, the designation of ""multiple habitats"" implies a versatile adaptability to various environments, which may include organic matter-rich substrates where it can derive energy from diverse organic compounds.↵↵As a nonsporulating organism, Melissococcus plutonius strain DAT561 relies on its metabolic capabilities rather than spore formation for survival and propagation, indicating a lifestyle that may involve continuous nutrient availability. This trait may influence its interactions within microbial communities, particularly in low-oxygen environments where it can thrive.↵↵Given its anaerobic oxygen requirement and chemoheterotrophic nature, this strain might play a role in the decomposition of organic matter, contributing to nutrient cycling in its habitats. Its presence could be particularly significant in environments where organic material accumulates, potentially influencing microbial community dynamics and the overall health of the ecosystem. Future research could elucidate the specific ecological roles of Melissococcus plutonius strain DAT561 and its interactions with other microorganisms in its environment." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Melissococcus Melissococcus plutonius positive Cocci No 1 Anaerobic 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 33970 NZ_AP018493.1 Bac0015617 Mycobacterium marinum strain ATCC 927 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium marinum Yes aerobic 30 aquaria; aquariums; aquatic environments; brackish water; domestic aquarium; Fresh water; Marine; pools; soil Nonsporulating Animal 1781 NZ_AP018496.1 Bac0015618 Lactococcus cremoris strain C4 "Lactococcus cremoris strain C4 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 40.0°C and exhibits facultative anaerobic growth. This strain is part of a broader group of lactic acid bacteria, commonly found in various habitats, including dairy environments, where it plays a crucial role in fermentation processes. ↵↵As a member of the Lactococcus genus, strain C4 is likely involved in the production of lactic acid, which contributes to the preservation and flavor development in fermented dairy products. The facultative anaerobic nature of this strain suggests that it can adapt to both aerobic and anaerobic conditions, making it versatile for growth in diverse environments. ↵↵Moreover, its ability to thrive at an elevated temperature of 40.0°C may indicate a potential for industrial applications where higher fermentation temperatures are beneficial, thereby enhancing efficiency in dairy production processes. The unique combination of traits exhibited by Lactococcus cremoris strain C4 underscores its importance in food microbiology, particularly in optimizing fermentation conditions and improving the quality of dairy products." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 NZ_AP018499.1 Bac0015619 Acetobacter orientalis strain FAN1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter orientalis 146474 NZ_AP018515.1 Bac0015620 Sphingobium sp. YG1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. YG1 2082188 NZ_AP018518.1 Bac0015621 Enterococcus faecalis strain KUB3007 "Enterococcus faecalis strain KUB3007 is a Gram-positive coccus that exhibits facultative anaerobic metabolism, utilizing organic compounds as a chemoorganotrophic energy source. This strain does not form spores and thrives optimally at a temperature of 37.0°C, which corresponds to the human body temperature, suggesting a potential association with warm-blooded hosts. ↵↵The versatility of E. faecalis strain KUB3007 in terms of habitat is noteworthy, as this microbe can inhabit multiple environments, which may include both human and environmental niches. Its ability to grow in varying oxygen conditions further enhances its adaptability, allowing it to occupy diverse ecological roles.↵↵The unique combination of traits in E. faecalis strain KUB3007 positions it as a significant player in microbial communities, particularly in environments where organic matter is abundant. Its presence in various habitats may contribute to nutrient cycling and ecological balance. Additionally, the strain's facultative anaerobic nature indicates a potential resilience to fluctuating oxygen levels, which could facilitate its survival and proliferation in dynamic ecosystems. This adaptability underscores the ecological importance of Enterococcus faecalis in both natural and anthropogenic environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_AP018546.1 Bac0015622 Sulfodiicoccus acidiphilus strain HS-1 Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfodiicoccus Sulfodiicoccus acidiphilus 1670455 NZ_AP018553.1 Bac0015623 Hydrogenophilus thermoluteolus strain TH-1 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilaceae Hydrogenophilus Hydrogenophilus thermoluteolus 297 NZ_AP018559.1 Bac0015624 Aerosticca soli strain Dysh456 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Aerosticca Aerosticca soli 2010829 NZ_AP018560.1 Bac0015625 Staphylococcus argenteus strain 58113 "Staphylococcus argenteus strain 58113 is a Gram-positive, cocci-shaped bacterium that typically arranges itself in clusters or singles. This strain is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Notably, S. argenteus strain 58113 exhibits an optimal growth temperature of 3.0 °C, indicating a potential adaptation to cooler habitats, possibly within host-associated niches.↵↵As a member of the Staphylococcus genus, this strain may share physiological traits with other species in the group, including its versatile metabolic capabilities. The ability to grow in a host-associated habitat suggests a complex interaction with host organisms, which could range from commensal relationships to opportunistic associations, although specific pathogenesis-related traits are not detailed here.↵↵The unique growth temperature of S. argenteus strain 58113 raises interesting questions regarding its ecological role, particularly in cold environments or in association with cold-blooded hosts. Further investigation into its ecological interactions could provide insights into its potential applications in biotechnology or its role in microbial communities in cooler habitats." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus argenteus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 985002 NZ_AP018562.1 Bac0015626 Sphingobium amiense strain DSM 16289 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium amiense 135719 NZ_AP018665.1 Bac0015627 Streptococcus dysgalactiae strain Kdys0611 "Streptococcus dysgalactiae strain Kdys0611 is a Gram-positive coccus that typically forms chains or occurs as single cells. This strain is nonsporulating and exhibits facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. dysgalactiae Kdys0611 is likely to inhabit specific niches within host organisms, although the precise nature of its associations remains to be fully elucidated.↵↵The morphological characteristics of S. dysgalactiae Kdys0611, particularly its coccoid shape and chain formation, are consistent with other members of the Streptococcus genus. The facultative anaerobic respiration further suggests that this strain can adapt to varying oxygen levels, which may be beneficial in fluctuating host environments.↵↵Understanding the ecological role of S. dysgalactiae Kdys0611 within its host could provide insights into its interactions with the host immune system and its potential contributions to the host's microbiome. Further research into its specific habitat preferences and metabolic capabilities may reveal more about its functional significance in the context of host-associated microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Chains-Singles Nonsporulating 1334 NZ_AP018727.1 Bac0015628 Ferriphaselus amnicola strain OYT1 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellaceae Ferriphaselus Ferriphaselus amnicola microaerophile 1188319 NZ_AP018738.1 Bac0015629 Sutterella megalosphaeroides strain 6FBBBH3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella megalosphaeroides 2494234 NZ_AP018786.1 Bac0015630 Acidithiobacillus ferridurans strain JCM 18981 "Acidithiobacillus ferridurans strain JCM 18981 is a Gram-negative, spirilla-shaped bacterium that exhibits obligate chemoautolithotrophic metabolism. This strain thrives in specialized habitats, where it plays a significant role in biogeochemical cycles, particularly in environments rich in iron and sulfur compounds. It is an aerobic organism, requiring oxygen for its metabolic processes, which aligns with its adaptation to environments where oxygen is available. ↵↵Optimal growth of A. ferridurans strain JCM 18981 occurs at a temperature of 30.0°C, suggesting its preference for moderately thermophilic conditions. Notably, this strain does not undergo sporulation, indicating that it relies on its metabolic capabilities to endure environmental stresses rather than forming resistant spores.↵↵The ability to utilize inorganic compounds as an energy source allows A. ferridurans strain JCM 18981 to occupy niches that may be inhospitable to other microbial life forms. Its unique metabolic pathway contributes to the oxidation of ferrous iron, which can influence the mineralogy of its habitat and potentially facilitate bioremediation processes in contaminated environments. Understanding the ecological role of this strain in specialized habitats may provide insights into microbial interactions and the cycling of essential elements in extreme environments." Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferridurans Negative Spirilla No 1 2 Aerobe 30 Obligate chemoautolithotroph Mesophilic Specialized Free living Nonsporulating 1232575 NZ_AP018795.1 Bac0015631 Escherichia coli strain E2855 "Escherichia coli strain E2855 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth for E. coli E2855 occurs at a temperature of 37.0 degrees Celsius, which is consistent with the typical body temperature of mammals, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli strains are widely recognized for their diverse metabolic capabilities and ecological versatility. The facultative anaerobic nature of strain E2855 allows it to exploit various niches within its host, potentially participating in essential metabolic processes while also adapting to fluctuating oxygen levels. This adaptability may contribute to its persistence in host-associated environments, where it can play roles ranging from commensalism to potential pathogenicity, depending on environmental conditions and host factors.↵↵The presence of E. coli E2855 in host-associated habitats highlights the intricate relationships that microorganisms maintain with their hosts. This relationship may influence nutrient cycling, immune response modulation, and overall microbial community dynamics within the host, underscoring the importance of this strain in understanding the complex interactions within microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_AP018798.1 Bac0015632 Escherichia coli strain E2863 "Escherichia coli strain E2863 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at 37.0°C, a temperature commonly found in the mammalian host environment. E. coli strain E2863 is categorized as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which allows it to adapt to various microenvironments within its host.↵↵As a member of the Enterobacteriaceae family, E. coli strain E2863 is host-associated, suggesting a close relationship with its host organism. This association highlights the strain's potential role in the microbiota, where it may contribute to various metabolic processes. The flexibility in oxygen utilization may also enhance its survival and proliferation in diverse host-associated niches, including the gastrointestinal tract, where competition for resources is common.↵↵Understanding the traits of E. coli strain E2863 provides insights into its adaptive strategies within the host ecosystem. Its ability to thrive at the typical body temperature of mammals and its facultative anaerobic metabolism may facilitate its persistence and functional contribution in the microbial community, suggesting a potential role in maintaining host health or participating in host-microbe interactions. Further studies are warranted to explore the specific ecological roles of this strain within its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_AP018802.1 Bac0015633 Aquitalea magnusonii strain H3 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Aquitalea Aquitalea magnusonii 332411 NZ_AP018823.1 Bac0015634 Acinetobacter ursingii strain M3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter ursingii 108980 NZ_AP018824.1 Bac0015635 Asticcacaulis excentricus strain M6 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Asticcacaulis Asticcacaulis excentricus 78587 NZ_AP018828.1 Bac0015636 Blastochloris tepida strain GI Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Blastochloridaceae Blastochloris Blastochloris tepida 2233851 NZ_AP018907.1 Bac0015637 Zymobacter palmae strain IAM14233 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Zymobacter Zymobacter palmae rhizomes 33074 NZ_AP018933.1 Bac0015638 Mycoplasmopsis californica strain HAZ160_1erythromycin Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis californica 2113 NZ_AP018943.1 Bac0015639 Apilactobacillus kunkeei strain FF30-6 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus kunkeei beebread; flowers; fruits; honey crop; pollen; wines 148814 NZ_AP019008.1 Bac0015640 Aeromonas hydrophila strain GSH8-2 "Aeromonas hydrophila strain GSH8-2 is a Gram-negative, rod-shaped bacterium that typically exists in various habitats, demonstrating its ecological versatility. This strain can be found in diverse arrangements, including chains, pairs, and singles, which may suggest adaptability in different environmental conditions. As a facultative aerobe, A. hydrophila GSH8-2 can thrive in both aerobic and anaerobic environments, allowing it to exploit a wide range of ecological niches. ↵↵With an optimal growth temperature of 22.0°C, this strain likely prefers moderately warm aquatic environments, which aligns with the general habitats occupied by Aeromonas species. Additionally, as a heterotroph, A. hydrophila GSH8-2 relies on organic compounds for energy, indicating its role in nutrient cycling within its ecosystem. ↵↵The adaptability of A. hydrophila strain GSH8-2 to fluctuating oxygen levels and its growth at moderate temperatures highlight its potential ecological significance in aquatic systems where organic matter decomposition is critical. Its ability to form various cell arrangements could enhance its survival and competitive abilities in diverse environmental settings, thus contributing to the dynamics of microbial communities in these habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 644 NZ_AP019194.1 Bac0015641 Aeromonas caviae strain GSH8M-1 "Aeromonas caviae strain GSH8M-1 is a Gram-negative bacterium that thrives in diverse aquatic environments, including compost systems and hospital settings, as well as in plant material compost piles. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its surroundings. The ability to grow in both aerobic and anaerobic conditions may enhance its survival in fluctuating environments, such as those found in compost, where oxygen availability can vary significantly.↵↵The presence of A. caviae strain GSH8M-1 in aquatic habitats highlights its potential role in nutrient cycling and organic matter decomposition, particularly in environments rich in organic material. Its adaptability to hospital environments also raises interesting questions regarding its potential interactions with other microbial communities, which may influence its ecological dynamics. This strain exemplifies the diverse ecological niches occupied by members of the Aeromonas genus, and its presence in both natural and anthropogenic environments underscores the complexities of microbial life in shaping ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas caviae Negative Facultative anaerobe aquatic environments; compost; hospital; plant material compost pile 648 NZ_AP019197.1 Bac0015642 Nocardioides baekrokdamisoli strain KCTC 39748 "Nocardioides baekrokdamisoli strain KCTC 39748 is a Gram-positive, spherical bacterium that demonstrates aerobic metabolism and thrives optimally at a temperature of 25.0 °C. This strain is categorized within the Actinobacteria phylum, which is known for its diverse metabolic capabilities and ecological roles. Notably, N. baekrokdamisoli is non-spore-forming, which suggests that it relies on vegetative growth for survival and reproduction rather than sporulation under adverse conditions.↵↵The Gram-positive nature of N. baekrokdamisoli indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria and contributes to their resilience in various environments. The spherical shape of this microbe may influence its interaction with other microorganisms and its adaptation to specific ecological niches. ↵↵Given its aerobic requirement, Nocardioides baekrokdamisoli likely participates in the degradation of organic matter in oxygen-rich environments, potentially playing a role in nutrient cycling. This trait may enable it to thrive in soil or aquatic ecosystems, where oxygen is readily available. Its metabolic versatility may also facilitate interactions with other microbial communities, highlighting its ecological importance in maintaining the balance of microbial ecosystems. Further research could elucidate its specific contributions to biogeochemical processes in its native habitats." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides baekrokdamisoli Gram-positive sphere non-motile aerobic 25 mesophilic non-spore-forming 1804624 NZ_AP019307.1 Bac0015643 Paenibacillus baekrokdamisoli strain KCTC 33723 "Paenibacillus baekrokdamisoli strain KCTC 33723 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 25.0 °C. As an aerobic organism, it relies on oxygen for its metabolic processes, which is characteristic of many members within the Paenibacillus genus. ↵↵The Gram-positive nature of this strain suggests that it possesses a thick peptidoglycan layer in its cell wall, a feature that often correlates with resilience in various environmental conditions. The ability to form spores indicates a survival strategy that allows the bacterium to endure unfavorable conditions, such as nutrient depletion or desiccation. ↵↵This strain's specific temperature preference of 25.0 °C may imply an adaptation to temperate environments, potentially influencing its distribution and ecological interactions. Notably, the spore-forming ability, combined with aerobic metabolism, may facilitate its role in nutrient cycling within its habitat, as it can effectively decompose organic matter while surviving in fluctuating environmental conditions. Such traits underscore the ecological significance of Paenibacillus baekrokdamisoli in soil microbiomes, where it may contribute to the maintenance of soil health and fertility through its metabolic activities." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus baekrokdamisoli Gram-positive rod motile aerobic 25 mesophilic spore-forming 1712516 NZ_AP019308.1 Bac0015644 Parageobacillus thermoglucosidasius strain TG4 "Parageobacillus thermoglucosidasius strain TG4 is a Gram-positive, rod-shaped bacterium known for its thermophilic properties. This organism thrives at elevated temperatures, making it particularly interesting for industrial applications involving high-temperature processes. Its ability to withstand and function optimally in such environments is a key characteristic that positions it as a potential candidate for biotechnological applications, especially in the production of biofuels and other thermophilic enzymatic reactions.↵↵The strain's rod shape contributes to its motility and adaptability in various environments, although specific motility mechanisms have not been detailed in the available data. The Gram-positive nature of P. thermoglucosidasius TG4 suggests a robust cell wall structure, which may confer advantages in extreme conditions typically characterized by high temperature and potential osmotic stress.↵↵Given its thermophilic nature and rod shape, P. thermoglucosidasius strain TG4 may play a significant role in the microbial communities found in geothermal environments, where it could contribute to the biogeochemical cycling of organic matter. Further research into its metabolic pathways and interactions with other microorganisms may provide valuable insights into its ecological niche and potential applications in biotechnology." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus thermoglucosidasius positive Rod thermophilic 1426 NZ_AP019364.1 Bac0015645 Fluviispira sanaruensis strain RF1110005 Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis 2493639 NZ_AP019369.1 Bac0015646 Qipengyuania flava strain KJ5 "Qipengyuania flava strain KJ5 is a rod-shaped bacterium that thrives in marine environments and exhibits an aerobic metabolism. This strain is characterized by its reliance on oxygen for growth, indicating its potential role in the oxidation processes within its aquatic habitat. Marine bacteria like Q. flava are often integral to the nutrient cycling in oceanic ecosystems, contributing to the degradation of organic materials and the maintenance of microbial diversity.↵↵The rod shape of Qipengyuania flava strain KJ5 may confer advantages in motility and surface attachment, facilitating interactions with other microorganisms and the surrounding environment. Its aerobic nature suggests that it may play a role in the degradation of organic compounds in oxygen-rich marine settings, possibly influencing nutrient availability for other marine life forms.↵↵Given its habitat and metabolic characteristics, Qipengyuania flava strain KJ5 may be involved in significant biogeochemical cycles within marine ecosystems, including carbon and nitrogen cycles. The interplay between aerobic bacteria and their environment is crucial for the overall health of marine habitats, highlighting the importance of studying such microorganisms to understand the complexities of marine microbiomes. Understanding the traits of Qipengyuania flava strain KJ5 can therefore contribute to insights into marine microbial ecology and the functional roles these bacteria play in oceanic environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Qipengyuania Qipengyuania flava Rod aerobic Marine 192812 NZ_AP019389.1 Bac0015647 Escherichia coli strain KS-NP019 "Escherichia coli strain KS-NP019 is a Gram-negative, rod-shaped bacterium characterized by its occurrence in pairs or as single cells. This strain thrives optimally at 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli strains are well-recognized as facultative anaerobes, indicating that KS-NP019 can grow in both oxygen-rich and oxygen-poor environments, allowing it to occupy various niches within the host. ↵↵The host-associated habitat of this strain implies potential interactions with the host’s microbiota and immune system, which may influence its metabolic processes and survival strategies. Its ability to thrive in varying oxygen conditions further underscores its versatility and adaptability, traits that are essential for colonization and persistence within host environments. Understanding the specific physiological roles of E. coli strain KS-NP019 within its ecological context could provide insights into its contributions to host health or its interactions with other microbial communities. Such knowledge is crucial for comprehending the broader implications of this strain in microbial ecology and potential biotechnological applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_AP024123.1 Bac0015648 Leptospira kobayashii strain E30 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira kobayashii 1917830 NZ_AP025028.1 Bac0015649 Clostridium botulinum strain Osaka2020 "Clostridium botulinum strain Osaka2020 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy, which is reflective of its adaptability to various habitats. Notably, strain Osaka2020 is an aerobe, requiring oxygen for growth and metabolic processes.↵↵Clostridium botulinum is widely recognized for its potential to produce botulinum toxin; however, the specific pathogenicity and toxin production capabilities of strain Osaka2020 are not detailed in the available data. The strain’s ability to thrive in multiple habitats suggests a versatile ecological niche, which may influence its interactions with other microorganisms and its role in various environments.↵↵Overall, the characteristics of C. botulinum strain Osaka2020 highlight its potential adaptability to diverse ecological conditions, providing insights into the metabolic flexibility of this bacterium within its environments. Further investigation into its ecological interactions could elucidate its potential roles in nutrient cycling and microbial community dynamics." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles NZ_AP025140 Bac0015650 Comamonas thiooxydans strain R2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas thiooxydans 363952 NZ_AP026738.1 Bac0015651 Marinomonas sp. THO17 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. THO17 3149048 NZ_AP031575.1 Bac0015652 Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Commensalibacter Commensalibacter papalotli (ex Servín-Garcidueñas et al. 2014) 1208583 NZ_ATSX01000011.1 Bac0015653 Lactobacillus fermentum MTCC 8711 "Lactobacillus fermentum MTCC 8711 is a Gram-positive, rod-shaped bacterium that typically exhibits a chain-like arrangement. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may provide it with a versatile ecological advantage in various environments. L. fermentum MTCC 8711 is found in multiple habitats, suggesting its adaptability and potential role in diverse microbial communities.↵↵As a member of the Lactobacillus genus, L. fermentum is known for its involvement in fermentation processes, which can influence food preservation and flavor development in various substrates. The strain's ability to thrive in different habitats may also facilitate its use in probiotic applications, contributing positively to gut health and microbial balance in the intestinal microbiome.↵↵The presence of this bacterium in varied environments underscores its ecological significance, with potential implications for food science and nutrition. Furthermore, its facultative anaerobic nature allows it to colonize niches that may fluctuate in oxygen availability, reflecting its resilience and versatility in adapting to changing environmental conditions. These traits highlight L. fermentum MTCC 8711 as a valuable organism for both research and practical applications in the fields of microbiology and fermentation technology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 NZ_AVAB01000110.1 Bac0015654 Bacillus cereus Rock3-29 "Bacillus cereus Rock3-29 is a Gram-positive, rod-shaped bacterium characterized by its tendency to form chains. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating that it requires oxygen for growth. The bacterium is found in multiple habitats, suggesting its versatility and adaptability to varying environmental conditions.↵↵The chain formation observed in Bacillus cereus Rock3-29 may play a role in its survival strategies, potentially enhancing its resistance to environmental stressors by increasing cell-to-cell communication and cooperation. Such traits might be advantageous in complex ecosystems where nutrient availability fluctuates. The ability to thrive in diverse habitats further underscores the ecological significance of this strain, highlighting its potential role in nutrient cycling and interactions within microbial communities. Overall, Bacillus cereus Rock3-29 exemplifies a resilient microbial entity that can adapt to and inhabit a variety of ecological niches." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 526984 NZ_CM000731.1 Bac0015655 Helicobacter canadensis MIT 98-5491 "Helicobacter canadensis MIT 98-5491 is a Gram-negative, microaerophilic bacterium characterized by its requirement for reduced oxygen levels for optimal growth. This species belongs to the genus Helicobacter, which is known for its spiral-shaped morphology and motility, typically facilitated by flagella. The microaerophilic nature of H. canadensis MIT 98-5491 suggests that it thrives in environments where oxygen concentrations are lower than those found in the atmosphere, which may influence its ecological niches and interactions with other microorganisms.↵↵The Gram-negative cell wall structure of H. canadensis MIT 98-5491, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, may confer certain advantages in terms of resistance to environmental stresses and antimicrobial agents. The physiological and biochemical properties associated with microaerophiles, including the potential production of unique metabolic byproducts under low oxygen conditions, could play a role in its ecological interactions.↵↵Given its specific oxygen requirements, H. canadensis MIT 98-5491 may inhabit specialized environments, such as gastric mucosa or other gastrointestinal niches, where microaerophilic conditions prevail. This ecological adaptation may offer insights into the evolutionary strategies employed by Helicobacter species and their roles within complex microbial communities. Further research into its metabolic capabilities and ecological interactions would be valuable for understanding its biological significance in various environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter canadensis negative microaerophile 537970 NZ_CM000776.2 Bac0015656 Algoriphagus machipongonensis strain PR1 "Algoriphagus machipongonensis strain PR1 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions and exhibits optimal growth at a temperature of 29.0°C. As a non-spore-forming microbe, it relies on vegetative reproduction, which may influence its survival strategies in various environments. This strain's specific temperature preference indicates a potential adaptation to mesophilic habitats, suggesting that it may play a role in nutrient cycling within such ecosystems.↵↵The aerobic nature of Algoriphagus machipongonensis strain PR1 highlights its metabolic capabilities, likely involving oxygen-dependent processes that could contribute to its ecological interactions. While the exact ecological niche of this strain has not been detailed, the characteristics it possesses suggest potential involvement in the degradation of organic materials in oxygen-rich environments. Understanding the metabolic pathways and ecological roles of strains like PR1 can provide insights into the broader functions of microbial communities, particularly in decomposing organic matter and supporting nutrient cycling in their respective habitats." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus machipongonensis Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 388413 NZ_CM001023.1 Bac0015657 Pseudomonas fluorescens WH6 "Pseudomonas fluorescens WH6 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, utilizing organic compounds as its energy source, and thrives optimally at a temperature of 25.0°C. As an aerobic microbe, Pseudomonas fluorescens WH6 requires oxygen for its metabolic processes, which aligns with its diverse habitat preferences that span multiple environments.↵↵The ability of Pseudomonas fluorescens WH6 to adapt to various ecological niches may contribute to its resilience and versatility in natural settings, including soil and water. This adaptability, combined with its nutritional flexibility as a heterotroph, allows it to play significant roles in nutrient cycling and organic matter decomposition. Such traits may also enable Pseudomonas fluorescens WH6 to interact with other microorganisms, potentially influencing community dynamics and ecological balance in its habitats. Overall, the ecological insights provided by the traits of Pseudomonas fluorescens WH6 emphasize its importance in microbial ecosystems, particularly in roles related to nutrient utilization and environmental adaptation." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 746360 NZ_CM001025.1 Bac0015658 Solidesulfovibrio carbinoliphilus subsp. oakridgensis strain Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio carbinoliphilus 345370 NZ_CM001368.1 Bac0015659 Caldithrix abyssi DSM 13497 Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi anaerobic 880073 NZ_CM001402.1 Bac0015660 Burkholderiales bacterium JOSHI_001 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium JOSHI_001 864051 NZ_CM001438.1 Bac0015661 Thermoanaerobacter siderophilus SR4 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter siderophilus anaerobic 880478 NZ_CM001486.1 Bac0015662 Desulfobacter postgatei 2ac9 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter postgatei anaerobic 879212 NZ_CM001488.1 Bac0015663 Pseudomonas lactis strain SS101 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lactis 1615674 NZ_CM001513.1 Bac0015664 Pseudomonas chlororaphis subsp. aureofaciens 30-84 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis 1038921 NZ_CM001559.1 Bac0015665 Treponema denticola AL-2 "Treponema denticola AL-2 is a Gram-negative spirochete characterized by its single-cell arrangement and optimal growth temperature of 30.0°C. This anaerobic bacterium is host-associated, indicating a potential symbiotic relationship with its host organisms. The spirilla shape of T. denticola AL-2 is typical of the Treponema genus, which is known for its distinctive helical structure that aids in motility within viscous environments, such as biofilms in the oral cavity.↵↵The anaerobic nature of T. denticola AL-2 suggests that it thrives in environments devoid of oxygen, a trait that aligns with its habitat in the human oral microbiome, where it may contribute to complex microbial communities. Due to its unique physiological traits, T. denticola AL-2 is likely to play a role in maintaining the balance of microbial populations within its host environment.↵↵Understanding the specific growth requirements and ecological interactions of T. denticola AL-2 may provide insights into its role in oral health and disease, as spirochetes are often implicated in various oral conditions. Further research into its ecological niche could reveal its contributions to microbial diversity and function in host-associated environments." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola Negative Spirilla No 1 2 Anaerobe 30 Mesophilic HostAssociated Free living Singles 999426 NZ_CM001798.1 Bac0015666 Enterococcus sp. HSIEG1 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. HSIEG1 1316414 NZ_CM002129.1 Bac0015667 Streptococcus sp. HSISS1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. HSISS1 1316410 NZ_CM002132.1 Bac0015668 Rhodococcus aetherivorans strain BCP1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus aetherivorans 191292 NZ_CM002177.1 Bac0015669 Streptomyces sp. PVA_94-07 strain PVA 94-07 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PVA_94-07 1225337 NZ_CM002274.1 Bac0015670 Parageobacillus genomosp. 1 strain NUB3621 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus genomosp. 1 thermophilic 1295642 NZ_CM002692.1 Bac0015671 Hoeflea phototrophica DFL-43 "Hoeflea phototrophica DFL-43 is a rod-shaped, aerobic microorganism that demonstrates optimal growth at a temperature of 32.0°C. This strain is characterized by its non-spore-forming nature, which implies that it relies on vegetative reproduction for its propagation. The aerobic requirement indicates that H. phototrophica DFL-43 utilizes oxygen for its metabolic processes, positioning it within environments rich in oxygen, such as photic zones in aquatic ecosystems. ↵↵The specific temperature preference suggests that this microbe may thrive in moderately warm environments, potentially influencing its distribution in natural habitats. Its ability to engage in phototrophic metabolism highlights the significance of light as an energy source, which may play a crucial role in its ecological interactions, particularly in carbon cycling and nutrient dynamics within its habitat. Given these traits, H. phototrophica DFL-43 may contribute to the productivity of microbial communities in nutrient-rich waters, such as those found in estuarine or freshwater systems, where light penetration and oxygen availability are conducive to its growth. The presence of this microorganism could also indicate specific ecological niches that support aerobic phototrophic life forms, underscoring the importance of such microbes in maintaining the balance of aquatic ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Parahoeflea Parahoeflea phototrophica rod aerobic 32 mesophilic non-spore-forming 411684 NZ_CM002917.1 Bac0015672 Helicobacter pylori strain 228/99 "Helicobacter pylori strain 228/99 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated organism, predominantly inhabiting the gastric mucosa of humans and other mammals.↵↵H. pylori is known for its unique adaptations that enable it to survive in the acidic environment of the stomach. Its microaerophilic nature indicates that it requires reduced levels of oxygen for growth, a trait that further facilitates its colonization in the gastric niche. The strain's spiral morphology is believed to contribute to its motility, allowing it to navigate through the viscous gastric mucus layer.↵↵While the specific pathogenicity and ecological interactions of strain 228/99 are not detailed in the provided traits, its adaptation to a host-associated environment suggests potential roles in influencing gastric health and disease. Notably, the ability of H. pylori strains to persist in a hostile environment presents insights into microbial survival strategies, revealing how bacteria can evolve mechanisms to thrive under specific host conditions. This resilience may also provide opportunities for understanding the microbial dynamics within the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CM003127.1 Bac0015673 Wenxinia marina DSM 24838 "Wenxinia marina DSM 24838 is a Gram-negative, ovoid-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 37.0 °C. This organism is characterized by its non-spore-forming nature, indicating a reliance on vegetative growth for survival and reproduction. The Gram-negative cell wall structure may confer certain advantages in its environment, such as increased resistance to certain antibiotics and the ability to engage in complex interactions with surrounding microbial communities.↵↵Wenxinia marina DSM 24838's optimal growth temperature aligns with typical mesophilic microorganisms, suggesting that it may be well-adapted to environments with moderate thermal conditions. The aerobic requirement further emphasizes its potential role in oxygen-rich habitats, where it could participate in critical biological processes such as nutrient cycling or organic matter degradation.↵↵The absence of sporulation indicates that Wenxinia marina DSM 24838 may have specific ecological niches where it can maintain its population without resorting to sporulation, possibly reflecting its adaptation to stable environments. Understanding the metabolic pathways and ecological roles of this bacterium could provide insights into its functions in marine ecosystems, particularly in relation to nutrient availability and interactions with other microbial species. This information is essential for unraveling the complexities of microbial life in marine environments and could inform future studies on microbial ecology and biotechnology applications." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Wenxinia Wenxinia marina Gram-negative ovoid non-motile aerobic 37 mesophilic non-spore-forming 1123501 NZ_CM003137.1 Bac0015674 Acinetobacter baumannii MRSN 3527 "Acinetobacter baumannii MRSN 3527 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37.0°C and is classified as a chemoheterotrophic aerobe, indicating that it requires oxygen for growth and derives its energy from organic compounds. The versatility of A. baumannii MRSN 3527 is demonstrated by its ability to inhabit multiple environments, suggesting a robust adaptability to various ecological niches. ↵↵The heterotrophic nature of this strain positions it within a complex web of microbial interactions, where it may engage in nutrient cycling and compete with other microorganisms for resources. Given its aerobic requirement, A. baumannii MRSN 3527 likely plays a role in oxygen-rich habitats, potentially influencing the dynamics of microbial communities in those settings. Understanding the specific ecological roles of A. baumannii strains, including MRSN 3527, could provide insights into their contributions to ecosystem functioning and their interactions with other microbial entities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 1409923 NZ_CM003318.1 Bac0015675 Clostridium botulinum C/D str. BKT12695 "Clostridium botulinum C/D str. BKT12695 is a Gram-positive, rod-shaped bacterium that typically forms pairs, singles, or chains, and is classified as an anaerobe, thriving in environments devoid of oxygen. This strain exhibits optimal growth at a temperature of 37.0°C, aligning with the thermal preferences observed in many mesophilic bacteria. As a chemoorganotroph, C. botulinum C/D str. BKT12695 utilizes organic compounds as its energy source, which is consistent with its metabolic capabilities and ecological versatility.↵↵The habitat of C. botulinum C/D str. BKT12695 is categorized as multiple, indicating its potential adaptability to various anaerobic environments. Such habitats may include soil, sediments, and decaying organic matter, where this bacterium can contribute to nutrient cycling. The ability to thrive in diverse ecological niches suggests that this strain may play a role in the degradation of organic materials, although the specific ecological interactions and contributions of C. botulinum C/D str. BKT12695 to its environment warrant further investigation. Understanding these traits helps elucidate the ecological dynamics in anaerobic environments and the role of Clostridium species in biogeochemical processes." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1443125 NZ_CM003332.1 Bac0015676 Streptococcus oralis strain DD25 "Streptococcus oralis strain DD25 is a Gram-positive, coccoidal bacterium characterized by its arrangement in pairs and chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both the presence and absence of oxygen. As a host-associated microbe, S. oralis strain DD25 is typically found in environments closely linked to host organisms, suggesting a potential symbiotic relationship.↵↵The Gram-positive nature of this strain implies a thicker peptidoglycan layer in its cell wall, which may contribute to its resilience in various environments within the host. The cocci shape and tendency to form pairs and chains are typical of the Streptococcus genus, which includes various species known for their roles in oral and systemic microbiota.↵↵Given its facultative anaerobic capability, S. oralis strain DD25 may play a significant role in the oral microbiome, adapting to fluctuating oxygen levels that occur during different states of host metabolism, such as during aerobic respiration and periods of anaerobic fermentation. This flexibility may not only enhance its persistence in the oral cavity but also influence the overall microbial community structure in that niche. Furthermore, the ability to associate with host tissues may suggest a role in maintaining oral health or contributing to the dynamics of microbial interactions within the host-associated environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 NZ_CM003838.1 Bac0015677 Streptococcus mitis strain DD22 "Streptococcus mitis strain DD22 is a Gram-positive cocci bacterium that typically forms chains or pairs. As a nonsporulating organism, it does not produce spores, which is consistent with its adaptation to a host-associated habitat. This strain is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments, allowing it to colonize various niches within host organisms.↵↵The ability of S. mitis strain DD22 to grow in diverse oxygen conditions may facilitate its survival in different anatomical sites of the host, contributing to its potential role in the complex microbial communities found in the oral cavity and other mucosal surfaces. Given its association with hosts, the strain's ecological significance likely lies in its interactions with the host immune system and other microbial species, highlighting the intricate balance of commensal relationships in maintaining host health. Further research into the specific interactions of S. mitis strain DD22 within its habitat could provide insights into its role in microbial ecology and host-microbe dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 NZ_CM003839.1 Bac0015678 Streptococcus infantis strain DD18 "Streptococcus infantis strain DD18 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism. This strain has been isolated from broiler farms, indicating its potential association with poultry environments. The Gram-positive nature of S. infantis strain DD18 suggests that it possesses a thick peptidoglycan layer in its cell wall, which is characteristic of bacteria within the Firmicutes phylum. ↵↵As a facultative anaerobe, S. infantis strain DD18 demonstrates metabolic flexibility, capable of thriving in both aerobic and anaerobic conditions. This trait may enhance its survival and competitive advantage in the dynamic and often challenging environments of broiler farms, where fluctuations in oxygen levels can occur due to various factors, including animal density and litter management.↵↵The presence of S. infantis strain DD18 in broiler farms may have implications for poultry health and production, as its metabolic activities could interact with the gut microbiome of poultry, influencing nutrient absorption and overall gut health. Understanding the specific roles and interactions of this strain within the poultry microbiome could provide valuable insights into optimizing poultry husbandry practices and enhancing animal welfare. Further research is warranted to elucidate the ecological functions and potential benefits of S. infantis strain DD18 within its habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis Positive Cocci Facultative anaerobe broiler farms 68892 NZ_CM003841.1 Bac0015679 Gilliamella sp. wkB7 Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Gilliamella Gilliamella sp. wkB7 3120264 NZ_CM004509.1 Bac0015680 Vibrio europaeus strain PP-638 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio europaeus 300876 NZ_CM004621.1 Bac0015681 Streptomyces subrutilus strain 10-1-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces subrutilus 36818 NZ_CM007203.1 Bac0015682 [Limnothrix rosea] IAM M-220 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Picosynechococcus [Limnothrix rosea] IAM M-220 454133 NZ_CM007613.1 Bac0015683 Streptomyces antibioticus strain DSM 41481 "Streptomyces antibioticus strain DSM 41481 is a Gram-positive bacterium notable for its role in the production of antibiotics. As a member of the genus Streptomyces, this strain exhibits filamentous growth and is characterized by its complex life cycle, which includes the formation of mycelium and spores. The Gram-positive nature of S. antibioticus indicates a thick peptidoglycan layer in its cell wall, which is typical of this genus and contributes to its structural integrity.↵↵This strain is particularly significant in the field of microbiology and pharmacology due to its ability to produce bioactive compounds, including various antibiotics that have therapeutic applications. Streptomyces species are renowned for their diverse secondary metabolite production, which has been extensively studied for its potential in treating bacterial infections and other diseases.↵↵In addition to its medicinal properties, S. antibioticus strain DSM 41481 may play a role in soil health and nutrient cycling, as many Streptomyces species are involved in the decomposition of organic matter and the synthesis of soil nutrients. The ecological functions of this strain could contribute to the dynamic interactions within microbial communities and the overall health of terrestrial ecosystems. Understanding the capabilities and functions of S. antibioticus may provide insights into harnessing its antibiotic-producing potential for biotechnological applications and sustainable practices in agriculture." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces antibioticus Positive 1890 NZ_CM007717.1 Bac0015684 Clostridium sporogenes strain PA 3679 "Clostridium sporogenes strain PA 3679 is a Gram-positive, anaerobic bacterium predominantly found in diverse habitats such as the caecum, colon, dairy products, and cheese, as well as in pit mud environments. This strain thrives in oxygen-depleted conditions, reflecting its anaerobic nature. The presence of C. sporogenes in the gut suggests a role in the digestive processes of various organisms, particularly in breaking down complex organic materials. Additionally, its association with dairy products and cheese may indicate its potential contribution to fermentation processes, influencing the texture and flavor profiles of these food items. ↵↵Notably, the occurrence of C. sporogenes in pit mud highlights its ecological versatility, as it can persist in varied environments, potentially playing roles in biogeochemical cycles or in the microbial community dynamics of anaerobic ecosystems. Understanding the specific metabolic pathways utilized by this strain in different habitats could provide insights into its ecological functions and contributions to nutrient cycling." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sporogenes Positive Anaerobe caecum; cheese; colon; dairy products; gut; intestine; pit mud 1509 NZ_CM007812.1 Bac0015685 Campylobacter concisus strain RCH 26 "Campylobacter concisus strain RCH 26 is a Gram-negative bacterium characterized by its spirilla shape and the tendency to exist in chains or as single cells. This strain is classified as microaerophilic, indicating that it requires reduced levels of oxygen for optimal growth, which is a typical trait for many members of the Campylobacter genus. Campylobacter concisus is primarily host-associated, suggesting a close relationship with specific host organisms, which may contribute to its ecological niche and survival strategies.↵↵The microaerophilic nature of strain RCH 26 implies that it thrives in environments where oxygen levels are lower than those found in the atmosphere, such as within the intestinal tracts of animals and humans. This adaptation may enhance its ability to colonize specific host environments, potentially influencing gut microbiota composition. While the pathogenic potential or specific ecological roles of Campylobacter concisus strain RCH 26 are not detailed in the available traits, its association with hosts highlights the importance of understanding such microbes in the context of host-microbe interactions. Further investigation into this strain’s metabolic capabilities and interactions within the host environment could provide insights into its ecological significance and potential roles in health and disease within the microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus Negative Spirilla No 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 199 NZ_CM007855.1 Bac0015686 Psychrobacter sp. 4Dc Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. 4Dc 888437 NZ_CM009115.1 Bac0015687 Ralstonia mannitolilytica strain GML-Rals1-TR Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia mannitolilytica hot spring 105219 NZ_CM009147.1 Bac0015688 Escherichia albertii strain MBT-EA1 "Escherichia albertii strain MBT-EA1 is a Gram-negative, facultative anaerobic bacterium. This strain, belonging to the genus Escherichia, exhibits the typical characteristics associated with members of this group, including a rod-shaped morphology. As a facultative anaerobe, E. albertii strain MBT-EA1 can grow in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels in its habitat. This metabolic flexibility may provide the strain with a competitive advantage in diverse ecological niches, particularly in environments where oxygen availability fluctuates.↵↵The Gram-negative cell wall structure of E. albertii strain MBT-EA1 is characterized by a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, which can influence the bacterium's interactions with its environment, including its response to antimicrobial agents. The ability to thrive under different oxygen conditions suggests that E. albertii strain MBT-EA1 may play a significant role in nutrient cycling and microbial community dynamics in its ecological niche.↵↵Overall, the traits of E. albertii strain MBT-EA1 highlight its potential versatility and adaptability, underscoring the importance of studying such microbes to better understand their roles in various environments and their interactions with other microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia albertii Negative Facultative anaerobe 208962 NZ_CM009573.1 Bac0015689 Burkholderia contaminans strain 170816 "Burkholderia contaminans strain 170816 is a Gram-negative bacterium characterized by its distinct cellular properties. As a member of the Burkholderia genus, this strain exhibits a robust metabolic versatility, allowing it to thrive in diverse environments. Its Gram-negative status indicates the presence of a complex outer membrane, which may confer certain advantages in terms of resistance to antibiotics and environmental stressors.↵↵Strain 170816's biochemical characteristics, while not detailed in the provided traits, are typically aligned with those of other members of the Burkholderia genus, which are known for their ability to metabolize a wide range of organic compounds. This metabolic capability often positions them as important players in bioremediation processes, indicating a potential role in the degradation of environmental pollutants.↵↵Moreover, Burkholderia species, including strain 170816, are often found in soil and water environments, suggesting a significant ecological role in nutrient cycling and microbial community dynamics. The ecological insights surrounding strain 170816 might highlight its potential contributions to soil health and biogeochemical processes, although further research would be necessary to elucidate its specific interactions within microbial ecosystems. Overall, Burkholderia contaminans strain 170816 represents a fascinating subject for further investigation into its ecological roles and applications in microbial biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia contaminans Negative 488447 NZ_CM009576.1 Bac0015690 Sphingopyxis lindanitolerans strain WS5A3p Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis lindanitolerans 2054227 NZ_CM009578.1 Bac0015691 Macrococcoides bohemicum strain 03/115 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides bohemicum 1903056 NZ_CM009972.1 Bac0015692 Prauserella muralis strain DSM 45305 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Prauserella Prauserella muralis 588067 NZ_CM009984.1 Bac0015693 Limosilactobacillus reuteri strain R2lc "Limosilactobacillus reuteri strain R2lc is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain displays facultative anaerobic characteristics, allowing it to thrive in both the presence and absence of oxygen. L. reuteri is known to inhabit a variety of environments, indicating its versatility and adaptability in diverse ecological niches.↵↵The ability to grow under varying oxygen conditions suggests that L. reuteri strain R2lc may play significant roles in different microbial communities, particularly in fermentation processes where oxygen levels fluctuate. Its chain arrangement may also contribute to its functional roles in microbial interactions and biofilm formation, potentially enhancing its survival and competitive ability in complex habitats.↵↵Given its presence in multiple habitats, L. reuteri strain R2lc may be involved in various symbiotic relationships with other microorganisms, influencing local microecologies and contributing to metabolic processes such as the fermentation of carbohydrates. This adaptability highlights the potential importance of L. reuteri in promoting gut health and contributing to the microbiome's overall functionality, though further research would be necessary to elucidate specific interactions and contributions within its ecological framework." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 NZ_CM011639.1 Bac0015694 Acinetobacter bereziniae strain HPC229 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bereziniae 106648 NZ_CM012182.1 Bac0015695 Enterococcus avium strain LC0559/18 "Enterococcus avium strain LC0559/18 is a Gram-positive coccus that is part of the diverse microbial community inhabiting the intestines. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments, which is a common characteristic of enterococci. Its presence in the intestinal tract indicates its potential role in the gastrointestinal microbiota, where it may contribute to the overall balance of microbial populations.↵↵The ability of Enterococcus avium strain LC0559/18 to adapt to varying oxygen levels suggests that it may play a significant role in gut health, potentially influencing digestion and nutrient absorption. Additionally, the strain's cocci morphology is typical of the Enterococcus genus, which is known for its resilience and ability to survive under diverse conditions. Understanding the specific functions and interactions of this strain within the intestinal ecosystem could provide insights into its contributions to host health and the maintenance of microbial diversity. ↵↵Further exploration of Enterococcus avium strain LC0559/18 could elucidate its specific interactions within the gut microbiome, offering potential implications for probiotic development or understanding microbial dynamics in health and disease." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus avium Positive Cocci Facultative anaerobe intestines 33945 NZ_CM013040.1 Bac0015696 Weissella paramesenteroides strain WpK4 "Weissella paramesenteroides strain WpK4 is a Gram-positive coccus that typically forms chains and pairs. This strain has been isolated from the habitat of dry naturally fermented Greek sausage, indicating its potential role in traditional fermentation processes. As a facultative anaerobe, W. paramesenteroides strain WpK4 can thrive in both aerobic and anaerobic conditions, suggesting adaptability to varying environments encountered during fermentation.↵↵The presence of this microbe in fermented foods highlights its potential contribution to the development of flavor, texture, and preservation of these products. Its ability to grow in the absence of oxygen underlines its significance in anaerobic fermentation environments, where it may participate in the production of organic acids and other metabolites that influence the quality and safety of fermented meats.↵↵Importantly, the unique habitat of strain WpK4 may provide insights into its metabolic capabilities and interactions within a complex microbial community. The traditional production of Greek sausage, characterized by specific microbial consortia, may reflect the strain's evolutionary adaptations to thrive in such niche environments, ultimately contributing to the distinct sensory attributes of the final product. This underscores the importance of studying specific strains like W. paramesenteroides in understanding microbial roles in food fermentation and preservation." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella paramesenteroides Positive Coccus Facultative anaerobe dry naturally fermented Greek sausage Chains; Pairs 1249 NZ_CM014767.1 Bac0015697 Klebsiella pneumoniae strain KpvST48_NDM "Klebsiella pneumoniae strain KpvST48_NDM is a Gram-negative, rod-shaped bacterium that typically exists in chains, pairs, or as single cells. This nonsporulating microbe thrives at an optimal temperature of 37.0°C and is classified as a chemoheterotroph, indicating that it derives energy from organic compounds. As a facultative anaerobe, KpvST48_NDM can grow in both aerobic and anaerobic environments, adapting its metabolism based on the availability of oxygen.↵↵This strain is found in host-associated habitats, suggesting a close relationship with its hosts, which may include humans and other animals. The ability to form chains and pairs may offer advantages in colonization and persistence within host tissues or fluids. The unique combination of its Gram-negative cell wall structure and facultative anaerobic metabolism likely contributes to its adaptability and survival in various environments, including those encountered within host organisms.↵↵Understanding the ecological role and adaptability of Klebsiella pneumoniae strain KpvST48_NDM could provide valuable insights into its interactions within host ecosystems and the implications of its metabolic versatility. This adaptability may also influence its potential response to environmental stresses, such as changes in oxygen availability or nutrient fluctuations, further highlighting the dynamic nature of this strain within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CM016732.1 Bac0015698 Bdellovibrio bacteriovorus W Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus 765869 NZ_CP002190.1 Bac0015699 Burkholderia plantarii strain PG1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia plantarii 41899 NZ_CP002581.1 Bac0015700 Shouchella lehensis G1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Shouchella Shouchella lehensis 1246626 NZ_CP003923.1 Bac0015701 Rhodococcus opacus PD630 "Rhodococcus opacus PD630 is a Gram-positive bacterium characterized by its cocci shape and filamentous cell arrangement. This microbe is classified as an aerobic organism, indicating that it requires oxygen for growth and metabolism. R. opacus PD630 has garnered attention for its potential applications in bioremediation and bioconversion processes due to its ability to degrade various organic compounds.↵↵The filamentous arrangement of R. opacus PD630 may facilitate enhanced surface area for interactions with its environment, which is beneficial for substrate utilization. This trait, combined with its aerobic metabolism, suggests that it may thrive in environments rich in organic pollutants where oxygen is readily available. Furthermore, the ability of R. opacus PD630 to adapt to diverse substrates positions it as a promising candidate for the development of sustainable biotechnological solutions aimed at environmental cleanup.↵↵Overall, R. opacus PD630 exemplifies the versatility of Gram-positive bacteria in aerobic conditions, highlighting its potential role in ecological restoration and the mitigation of pollution in contaminated environments. Its filamentous growth form may also provide insights into microbial community dynamics, particularly in aerobic habitats where filamentous organisms can contribute to the structural complexity of biofilms and microbial mats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 543736 NZ_CP003949.1 Bac0015702 Streptomyces sp. 769 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 769 1262452 NZ_CP003987.1 Bac0015703 Legionella oakridgensis ATCC 33761 = DSM 21215 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella oakridgensis 1268635 NZ_CP004006.1 Bac0015704 Paenibacillus sabinae T27 "Paenibacillus sabinae T27 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities, thriving optimally at a temperature of 29.0°C and requiring anaerobic conditions for growth. This species belongs to the genus Paenibacillus, which is known for its diverse metabolic capabilities and resilience in various environments.↵↵As a member of the Bacilli class, P. sabinae T27 demonstrates significant adaptability, particularly in low-oxygen environments, where it can utilize fermentation processes to generate energy. The ability to form spores is a critical trait that allows P. sabinae T27 to withstand unfavorable environmental conditions, facilitating its survival and potential dispersal in diverse habitats.↵↵The optimal growth temperature of 29.0°C suggests that P. sabinae T27 may inhabit environments that are cooler than typical mammalian body temperatures, potentially indicating a niche in soil or decaying organic matter where such temperatures are prevalent. This characteristic, combined with its anaerobic requirement, points to a role in the decomposition of organic materials and nutrient cycling within its ecosystem.↵↵Overall, P. sabinae T27's traits highlight its ecological importance in anaerobic processes, contributing to the breakdown of complex organic compounds and the maintenance of soil health." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sabinae Gram-positive rod anaerobic 29 mesophilic spore-forming 1268072 NZ_CP004078.1 Bac0015705 Borrelia miyamotoi FR64b Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia miyamotoi 1292392 NZ_CP004217.2 Bac0015706 Corynebacterium vitaeruminis DSM 20294 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium vitaeruminis microaerophile 29 mesophilic 1224164 NZ_CP004353.1 Bac0015707 Komagataeibacter xylinus E25 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter xylinus 1296990 NZ_CP004360.1 Bac0015708 Flammeovirgaceae bacterium 311 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirgaceae bacterium 311 1257021 NZ_CP004371.1 Bac0015709 Gluconobacter oxydans DSM 3504 "Gluconobacter oxydans DSM 3504 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives in aerobic environments, necessitating the presence of oxygen for its metabolic processes. Its optimal growth temperature is approximately 25.0°C, suggesting a preference for moderate environmental conditions.↵↵Gluconobacter oxydans is known for its ability to oxidize a variety of substrates, which positions it as a significant player in biotechnological applications, particularly in the production of organic acids and alcohols from sugars. This metabolic versatility, combined with its aerobic nature, indicates that it can occupy diverse habitats where organic materials are present, potentially including fruit surfaces, fermented products, and various natural environments rich in carbohydrates.↵↵The ability of G. oxydans to efficiently utilize its aerobic metabolism in varying habitats underscores its ecological adaptability and may contribute to its role in the biotransformation processes within these environments. Its presence in multiple habitats may also reflect its potential to interact with other microbial communities, enhancing the understanding of its ecological significance in nutrient cycling and organic matter decomposition." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter oxydans Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living Singles 1288313 NZ_CP004373.1 Bac0015710 Pasteurella multocida subsp. multocida OH4807 "Pasteurella multocida subsp. multocida OH4807 is a Gram-negative, rod-shaped bacterium that thrives optimally at 37.0°C, indicating its adaptation to the physiological temperature of warm-blooded hosts. This strain is classified as a facultative anaerobe, enabling it to grow in both oxygen-rich and low-oxygen environments, which is characteristic of many bacteria associated with host organisms. ↵↵P. multocida subsp. multocida is typically found in habitats closely linked to its hosts, suggesting a potential relationship with animal microbiomes or infectious processes. Its ability to flourish in the presence or absence of oxygen may facilitate its survival in various niches within the host environment, including tissues where oxygen levels may fluctuate. ↵↵The association of this bacterium with specific hosts underscores its potential role in the microbial communities of those organisms, contributing to the complex interactions within the host's microbiota. Such interactions may influence nutrient cycling, immune responses, and overall host health, providing insights into the ecological dynamics at play in host-associated environments. Understanding the characteristics and capabilities of P. multocida subsp. multocida OH4807 could offer valuable information for further studies on bacterial behavior in host systems and their implications for microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 1304873 NZ_CP004391.1 Bac0015711 Celeribacter indicus strain P73 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter indicus 1208324 NZ_CP004393.1 Bac0015712 Corynebacterium humireducens NBRC 106098 = DSM 45392 "Corynebacterium humireducens NBRC 106098 (also known as DSM 45392) is a Gram-positive, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolic capabilities. This organism thrives optimally at a temperature of 37.0 °C, which is indicative of its potential association with warm-blooded hosts or environments. ↵↵As a member of the Corynebacterium genus, C. humireducens is likely to exhibit a range of metabolic activities that could enable it to adapt to diverse ecological niches. Its facultative anaerobic nature suggests it can survive in both oxygen-rich and oxygen-limited environments, potentially allowing it to inhabit various substrates and ecosystems, including those that are nutrient-rich or have fluctuating oxygen levels.↵↵This adaptability may provide insights into its role in biogeochemical cycles, particularly in environments where organic matter decomposition occurs under varying oxygen conditions. The ability of C. humireducens to thrive in such environments positions it as a potentially significant player in microbial communities involved in the breakdown of complex organic compounds. Further study of its metabolic pathways could reveal additional ecological roles and applications in bioremediation or industrial microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium humireducens Gram-positive rod non-motile facultative aerobe/anaerobe 37 mesophilic 1223515 NZ_CP005286.1 Bac0015713 Borrelia parkeri SLO Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia parkeri 1313294 NZ_CP005851.2 Bac0015714 Mycoplasmopsis bovis CQ-W70 "Mycoplasmopsis bovis CQ-W70 is a Gram-negative, coccoid-shaped bacterium that exists predominantly in a single-cell arrangement and exhibits facultative anaerobic metabolism. This microbe is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon. It thrives optimally at a temperature of 37.0°C, which suggests an adaptation to a host-associated habitat, potentially reflecting its ecological role within warm-blooded hosts.↵↵As a nonsporulating organism, Mycoplasmopsis bovis CQ-W70 is unable to form spores, a trait that may influence its survival and dissemination strategies in its associated habitat. The facultative nature of its oxygen requirement allows it to adapt to varying oxygen levels, which may be advantageous in fluctuating environments within host organisms.↵↵The unique combination of traits exhibited by Mycoplasmopsis bovis CQ-W70 highlights its potential for niche specialization within host-associated environments. Its optimal growth temperature and metabolic flexibility suggest a potential role in the complex microbial communities residing in the host, possibly contributing to the overall metabolic processes within the host's microbiota. Further studies could elucidate its interactions within these communities and its potential influence on host health and metabolism." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis Negative Cocci No 1 1 Facultative 37 Chemoheterotroph Mesophilic HostAssociated Free living Singles Nonsporulating 1316930 NZ_CP005933.1 Bac0015715 Photobacterium gaetbulicola Gung47 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium gaetbulicola 658445 NZ_CP005973.1 Bac0015716 Myxococcus fulvus 124B02 "Myxococcus fulvus 124B02 is a species of coccus-shaped bacterium belonging to the Myxobacteria group, which is characterized by its unique social behavior and complex life cycle. This strain exhibits a distinctive morphology typical of its genus, with cocci forming in clusters that facilitate cooperative interactions during growth and development.↵↵As a member of the Myxobacteria, M. fulvus 124B02 is known for its ability to glide on solid surfaces, which is thought to be a key adaptation for nutrient acquisition in its natural environment. Myxobacteria are well-known for their capacity to undergo a multicellular developmental process, forming fruiting bodies under nutrient-limiting conditions. While specific details regarding the environmental conditions and interactions of M. fulvus 124B02 are not provided, the social behavior exhibited by Myxococcus species generally suggests a role in nutrient cycling within their ecosystems.↵↵The ecological significance of M. fulvus 124B02 may extend to its potential involvement in the decomposition of organic matter, as many Myxobacteria are adept at degrading complex substrates. This ability not only contributes to nutrient recycling in soil and other habitats but also highlights the importance of these microbes in maintaining ecosystem health. Further studies could elucidate the specific ecological roles and interactions of M. fulvus 124B02, particularly in relation to its cooperative life strategies." Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus Cocci 1334629 NZ_CP006003.1 Bac0015717 Bifidobacterium [indicum] DSM 20214 = LMG 11587 "Bifidobacterium indicum DSM 20214, also designated as LMG 11587, is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium. This microbe is characterized by its ability to thrive in oxygen-free environments, which is typical of many members within this genus, known for their roles in gastrointestinal health. ↵↵Bifidobacterium indicum is often associated with the human gut microbiota, where it contributes to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut health. The presence of this bacterium may play a role in maintaining the balance of the intestinal microbiome, supporting digestive processes, and possibly modulating immune responses.↵↵Its anaerobic nature suggests that Bifidobacterium indicum may be sensitive to oxygen exposure, which is a key consideration when isolating or studying this organism in laboratory settings. Understanding the specific conditions under which this bacterium thrives can provide insights into its functional contributions to host health and its potential applications in probiotic formulations.↵↵Moreover, the unique metabolic capabilities of Bifidobacterium indicum may illuminate pathways of carbohydrate fermentation and their implications for dietary recommendations aimed at enhancing gut microbiota diversity and overall health. Further research into this strain may reveal additional functional properties that could be leveraged in both clinical and nutritional contexts." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium coryneforme Positive Anaerobe 1341694 NZ_CP006018.1 Bac0015718 Synechococcus sp. KORDI-100 strain KORDI 100 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. KORDI-100 1280380 NZ_CP006269.1 Bac0015719 Synechococcus sp. KORDI-52 strain KORDI 52 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. KORDI-52 585425 NZ_CP006271.1 Bac0015720 Sodalis praecaptivus strain HS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bruguierivoracaceae Sodalis Sodalis praecaptivus 1239307 NZ_CP006570.1 Bac0015721 Aeromonas hydrophila 4AK4 "Aeromonas hydrophila 4AK4 is a Gram-negative, rod-shaped bacterium that typically exists in various habitats, demonstrating a versatile ecological niche. This microbe can be found in different arrangements, including singles, pairs, and chains, which may influence its interaction with other microorganisms and its environment. As a facultative aerobe, A. hydrophila 4AK4 possesses the metabolic flexibility to thrive in both aerobic and anaerobic conditions, allowing it to adapt to fluctuating oxygen levels in its surroundings.↵↵The optimal growth temperature for A. hydrophila 4AK4 is 22.0 °C, indicating a preference for mesophilic conditions that are often found in freshwater and brackish environments. This temperature range suggests a potential adaptation to seasonal variations in aquatic ecosystems. As a heterotroph, this bacterium relies on organic compounds for its energy needs, which positions it as an integral player in nutrient cycling within its habitat.↵↵The diverse habitats occupied by A. hydrophila 4AK4, combined with its facultative anaerobic capabilities and heterotrophic lifestyle, underscore its ecological versatility. Such adaptability may facilitate its survival in environments subject to change, demonstrating its potential role in both microbial communities and broader ecological processes. Understanding the traits of A. hydrophila 4AK4 can provide insights into the dynamics of microbial life in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 1354302 NZ_CP006579.1 Bac0015722 Edwardsiella anguillarum ET080813 strain 80813 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella anguillarum 1821960 NZ_CP006664.1 Bac0015723 Spiroplasma culicicola AES-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma culicicola microaerophile 1276246 NZ_CP006681.1 Bac0015724 Leptospira santarosai serovar Shermani str. LT 821 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 758847 NZ_CP006694.1 Bac0015725 Comamonas testosteroni TK102 "Comamonas testosteroni TK102 is a nonsporulating, Gram-negative rod-shaped bacterium that exhibits aerobic metabolic characteristics. This species is part of the Comamonas genus, which is known for its versatility in various environments, as indicated by its habitat being classified as multiple. The ability to thrive in diverse habitats suggests that C. testosteroni TK102 may play a role in various ecological niches, potentially participating in biogeochemical cycles or interactions with other microorganisms.↵↵As an aerobic organism, C. testosteroni TK102 depends on oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability varies. The absence of sporulation indicates that this strain does not form spores as a survival strategy, which may limit its resilience in extreme conditions compared to sporulating bacteria. However, its adaptation to multiple habitats suggests that it can effectively exploit available resources in its environment.↵↵Overall, the ecological role of Comamonas testosteroni TK102 may extend beyond simple nutrient cycling, potentially involving interactions with organic compounds, including those derived from anthropogenic sources, which could be significant in bioremediation applications. Further research could elucidate its specific functions and contributions within microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni Negative Rod No 1 2 Aerobe Mesophilic Multiple Free living Nonsporulating 1392005 NZ_CP006704.1 Bac0015726 Bifidobacterium longum subsp. longum GT15 "Bifidobacterium longum subsp. longum GT15 is a Gram-positive, rod-shaped bacterium that typically arranges itself in clusters, pairs, or singles. As an anaerobic organism, it thrives in environments devoid of oxygen, making it well-suited for host-associated habitats, such as the gastrointestinal tract of mammals. This microbe exhibits optimal growth at a temperature of 37.0°C, which coincides with the physiological temperature of its host.↵↵Bifidobacterium longum subsp. longum is known for its potential beneficial roles in the gut microbiome, contributing to digestive health and supporting the immune system. Its ability to grow in clusters and pairs may enhance its survival and functionality in the complex microbial communities of the host, allowing for effective interactions with both the host's immune cells and other microbial species. ↵↵Understanding the specific growth conditions and morphological traits of Bifidobacterium longum subsp. longum GT15 can provide insights into its ecological role within the gut microbiome, particularly regarding its adaptability to anaerobic conditions and its potential contributions to metabolic processes in the host. This strain exemplifies the diverse adaptations of Bifidobacteria, highlighting their importance in maintaining gut homeostasis and overall health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1300227 NZ_CP006741.1 Bac0015727 Streptococcus equi subsp. zooepidemicus CY "Streptococcus equi subsp. zooepidemicus CY is a Gram-positive cocci bacterium that typically arranges itself in pairs or chains. As a nonsporulating organism, it relies on its host-associated habitat for survival and proliferation. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which is advantageous for its adaptability within host tissues.↵↵The presence of S. equi subsp. zooepidemicus in various host-associated niches suggests its potential role in interspecies microbial interactions, particularly within the equine and possibly other animal populations. Its ability to exist in pairs or chains may facilitate communication and cooperation among cells, influencing its metabolic behavior and ecological dynamics within the host. Understanding the physiological traits of S. equi subsp. zooepidemicus CY can provide insights into its ecological roles and interactions within the microbiomes of mammals, particularly in relation to its host's health and disease states." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Pairs-Chains Nonsporulating 1403449 NZ_CP006770.1 Bac0015728 Bacteroidales bacterium CF Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidales bacterium CF 1400053 NZ_CP006772.1 Bac0015729 Lactobacillus gasseri DSM 14869 "Lactobacillus gasseri DSM 14869 is a Gram-positive, rod-shaped bacterium that typically exists in chains or as single cells. This species is associated with host environments, indicating a potential role in symbiotic relationships within its habitat. As a facultative anaerobe, L. gasseri DSM 14869 can thrive in both aerobic and anaerobic conditions, which may contribute to its versatility in various biological environments.↵↵The optimal growth temperature for Lactobacillus gasseri DSM 14869 is 25.0°C, suggesting that it is well-suited to moderate thermal conditions, potentially reflecting its adaptation to the natural temperatures of its host-associated habitats. This temperature preference may influence its metabolic activities and interactions within the host.↵↵Lactobacillus species, including L. gasseri, are often recognized for their probiotic properties; however, specific functional traits of DSM 14869 are not detailed in the provided data. Understanding the growth characteristics and environmental adaptability of L. gasseri DSM 14869 could shed light on its potential applications in gut health and fermentation processes. The ecological role of this microbe, particularly in relation to its host, may underscore the importance of maintaining microbial diversity in host-associated microbiomes, which can be crucial for overall health and metabolic function." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains - Singles 1380360 NZ_CP006803.1 Bac0015730 Helicobacter pylori oki112 "Helicobacter pylori oki112 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence as single cells. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat, as it is host-associated, typically found in the gastric mucosa of its host. ↵↵As a member of the Helicobacter genus, H. pylori oki112 is adapted to survive in the acidic environment of the stomach, which suggests a unique evolutionary relationship with its host. The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for growth, a trait that may enhance its survival in the oxygen-limited environment of the gastric niche. ↵↵The adaptation of H. pylori oki112 to its specific microenvironment not only highlights its physiological characteristics but also suggests potential roles in the microbiome of the host. Understanding the precise interactions of this strain within its environment could provide insights into its contributions to host health or disease, particularly in relation to gastric conditions. Exploring such ecological dynamics may yield valuable information on the balance between commensal and pathogenic interactions in host-associated microbiomes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1382921 NZ_CP006821.1 Bac0015731 Helicobacter pylori oki673 "Helicobacter pylori oki673 is a Gram-negative bacterium characterized by its spiral shape and the presence of single cells in its arrangement. This microbe is microaerophilic, indicating that it thrives in environments with lower oxygen levels than that found in the atmosphere, which aligns with its habitat as a host-associated organism. H. pylori oki673 exhibits optimal growth at a temperature of 37.0°C, a condition typical for many human-associated pathogens.↵↵As a member of the Helicobacter genus, H. pylori oki673 is likely adapted to colonize the gastric mucosa, where it may engage in complex interactions with the host's immune system and gut microbiota. The ability to survive in microaerophilic conditions suggests a specialized metabolic capability that allows it to exploit niches within the host that are less accessible to other microorganisms. Understanding the traits of H. pylori oki673 can provide insights into its ecological role within the gastric environment and its potential influence on the overall health of the host. Further research may reveal how this microbe interacts with host factors and its implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1382925 NZ_CP006825.1 Bac0015732 Corynebacterium glyciniphilum AJ 3170 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glyciniphilum 1404245 NZ_CP006842.1 Bac0015733 Nocardia nova SH22a Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia nova 1415166 NZ_CP006850.1 Bac0015734 Neisseria meningitidis LNP21362 "Neisseria meningitidis LNP21362 is a Gram-negative bacterium characterized by its cocci shape and typical arrangement in pairs. This microbe thrives optimally at a temperature of 35.0°C, suggesting a preference for conditions similar to those found in the human body. N. meningitidis LNP21362 is classified as an aerobic organism, requiring oxygen for its metabolic processes, which aligns with its host-associated habitat. ↵↵As a member of the genus Neisseria, this strain is closely associated with human hosts, where it may be part of the normal flora or, under certain circumstances, a potential pathogen. The pairwise arrangement of the cells is a distinguishing morphological feature, which can be critical for identification and differentiation from other species within the genus. ↵↵The ecological relevance of N. meningitidis LNP21362 may lie in its adaptation to the human host environment, where it can play a role in microbial interactions within the mucosal surfaces. This adaptation suggests that it could influence host immune responses or interact with other microbial communities, contributing to the dynamic balance of the human microbiome. Understanding the traits of N. meningitidis LNP21362 may provide insights into its behavior and potential implications for human health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 1386087 NZ_CP006869.1 Bac0015735 Rhizobium gallicum bv. gallicum R602sp strain R602 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium gallicum 56730 NZ_CP006878.1 Bac0015736 Clostridium botulinum Prevot_594 "Clostridium botulinum Prevot_594 is a Gram-positive, anaerobic bacterium known for its unique metabolic characteristics and potential implications in various environments. As a member of the Clostridium genus, this strain thrives in oxygen-depleted conditions, which is characteristic of many Clostridia. Its anaerobic nature suggests that it relies on fermentation processes for energy production, which allows it to inhabit niche environments such as deep sediments, decaying organic matter, and other anoxic habitats.↵↵The Gram-positive cell wall structure of C. botulinum Prevot_594 indicates the presence of a thick peptidoglycan layer, which is typical of this genus and provides structural integrity while potentially influencing its interactions with other microorganisms and the surrounding environment. This trait may also play a role in the bacterium's resilience to various external stressors, including potential antimicrobial agents.↵↵Understanding the ecological roles of C. botulinum Prevot_594 in anaerobic environments can provide insights into its contributions to nutrient cycling and organic matter decomposition. Moreover, the ability of this bacterium to thrive in low-oxygen conditions highlights the importance of anaerobes in maintaining ecosystem balance, particularly in environments where aerobic organisms cannot survive. Further research into this strain could reveal more about its biological interactions and ecological significance within its native habitat." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sporogenes Positive Anaerobe 1408284 NZ_CP006901.1 Bac0015737 Clostridium baratii str. Sullivan Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium baratii 1415775 NZ_CP006905.1 Bac0015738 Klebsiella pneumoniae 30660/NJST258_1 "Klebsiella pneumoniae 30660/NJST258_1 is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements, including singles, pairs, and chains. It is a nonsporulating organism that thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts. As a chemoheterotroph, K. pneumoniae 30660/NJST258_1 derives its energy from organic compounds, supporting its role in diverse host-associated environments.↵↵This strain exhibits facultative anaerobic respiration, allowing it to adapt to fluctuating oxygen levels within its host habitats. Such metabolic versatility may enable K. pneumoniae 30660/NJST258_1 to occupy niches that are oxygen-limited, contributing to its survival and potential interactions within the microbiome of its host. ↵↵The ability to exist in various cellular arrangements and its facultative anaerobic metabolism suggest that K. pneumoniae 30660/NJST258_1 may play a complex role in microbial communities, possibly engaging in interactions that could influence the host's health or disease state. This adaptability underscores the importance of understanding K. pneumoniae's ecological roles, particularly in relation to its association with host environments and the implications for microbial dynamics within those systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 1420012 NZ_CP006923.1 Bac0015739 Dickeya zeae EC1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya zeae 1427366 NZ_CP006929.1 Bac0015740 Methanobacterium formicicum strain BRM9 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum 2162 NZ_CP006933.1 Bac0015741 Spiroplasma sabaudiense Ar-1343 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sabaudiense 1276257 NZ_CP006934.1 Bac0015742 Bibersteinia trehalosi USDA-ARS-USMARC-188 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Bibersteinia Bibersteinia trehalosi 1263829 NZ_CP006954.1 Bac0015743 Mycoplasma capricolum subsp. capripneumoniae 87001 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum 1124992 NZ_CP006959.1 Bac0015744 Pseudomonas sp. FGI182 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FGI182 1259844 NZ_CP007012.1 Bac0015745 Thermocrinis ruber strain DSM 23557 Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Thermocrinis Thermocrinis ruber 75906 NZ_CP007028.1 Bac0015746 Thioalkalivibrio paradoxus ARh 1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio paradoxus 713585 NZ_CP007029.1 Bac0015747 Desulfitobacterium metallireducens DSM 15288 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Desulfitobacterium Desulfitobacterium metallireducens anaerobic 871968 NZ_CP007032.1 Bac0015748 Niabella soli DSM 19437 "Niabella soli DSM 19437 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of approximately 29.0°C. This microbial species is of interest due to its specific growth conditions and morphological characteristics, which may contribute to its ecological niche in soil environments. ↵↵As a Gram-negative organism, Niabella soli possesses a distinctive cell wall structure that includes a thin peptidoglycan layer and an outer membrane, which may play a role in its interactions with other soil microorganisms and abiotic factors. The requirement for aerobic conditions suggests that this bacterium relies on oxygen for its metabolic processes, potentially influencing its distribution in well-aerated soil layers where oxygen availability is sufficient.↵↵The optimal growth temperature of 29.0°C indicates that Niabella soli may thrive in temperate environments, which could influence its role in soil nutrient cycling and microbial community dynamics. The adaptability of this bacterium to specific thermal and oxygen conditions suggests it may be involved in specialized ecological interactions, such as the degradation of organic matter or participation in symbiotic relationships with plants.↵↵Overall, the traits of Niabella soli DSM 19437 highlight its potential contributions to soil health and ecosystem functioning, particularly in habitats where aerobic conditions predominate and temperatures align with its optimal growth range." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Niabella Niabella soli Gram-negative rod non-motile aerobic 29 mesophilic 929713 NZ_CP007035.1 Bac0015749 Pseudomonas cichorii JBC1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cichorii 1441629 NZ_CP007039.1 Bac0015750 Chania multitudinisentens RB-25 "Chania multitudinisentens RB-25 is a Gram-negative, rod-shaped bacterium that exhibits an optimal growth temperature of 29.0°C and is obligately aerobic. This species is characterized by its rod morphology, which is typical of many bacteria within its phylogenetic context. The preference for aerobic conditions suggests that Chania multitudinisentens RB-25 relies on oxygen for its metabolic processes, which may influence its habitat and ecological interactions.↵↵The specific growth temperature of 29.0°C indicates that this bacterium is well-suited to environments that provide mild warmth, potentially aligning with mesophilic conditions found in various natural and anthropogenic ecosystems. The adaptation to aerobic metabolism may also suggest a role in biogeochemical cycles, particularly in the degradation of organic matter where oxygen is readily available.↵↵Further investigation into the ecological role of Chania multitudinisentens RB-25 could illuminate its interactions within microbial communities and its potential contributions to nutrient cycling in its native habitat. Understanding its metabolic capabilities and environmental preferences may provide insights into its functional significance in microbial ecosystems, particularly in contexts where aerobic degradation processes are critical." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Chania Chania multitudinisentens Gram-negative rod aerobic 29 mesophilic 1441930 NZ_CP007044.2 Bac0015751 Desulfurella acetivorans A63 Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Desulfurellaceae Desulfurella Desulfurella acetivorans anaerobic 694431 NZ_CP007051.1 Bac0015752 Opitutaceae bacterium TAV5 Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutaceae bacterium TAV5 794903 NZ_CP007054.1 Bac0015753 Halobacterium sp. DL1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. DL1 751944 NZ_CP007060.1 Bac0015754 Gemmatirosa kalamazoonensis strain KBS708 extrachromosomal. Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis 861299 NZ_CP007127.1 Bac0015755 Gemmatirosa kalamazoonensis strain KBS708 Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis 861299 NZ_CP007130.1 Bac0015756 Fimbriimonas ginsengisoli Gsoil 348 Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli 661478 NZ_CP007139.1 Bac0015757 Mesomycoplasma bovoculi M165/69 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma bovoculi 743966 NZ_CP007154.1 Bac0015758 Candidatus Nitrososphaera evergladensis SR1 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera evergladensis 1459636 NZ_CP007174.1 Bac0015759 Campylobacter coli RM4661 "Campylobacter coli RM4661 is a Gram-negative, microaerophilic bacterium primarily recognized for its distinctive spiral rod shape. Microaerophiles, such as this strain, thrive in environments with reduced oxygen levels, typically around 5-10% oxygen concentration, which is critical for their metabolic processes. This adaptation allows C. coli RM4661 to inhabit specific ecological niches where oxygen is limited, such as in the intestines of various animals, which may serve as reservoirs for the organism.↵↵Due to its Gram-negative cell wall structure, C. coli RM4661 possesses an outer membrane that contains lipopolysaccharides, contributing to its resilience in diverse environments and potentially influencing its interactions with hosts and other microorganisms. The microaerophilic nature of this organism suggests that it may play a role in the anaerobic digestion processes occurring within animal gastrointestinal tracts, where it could contribute to the microbiome's overall functionality.↵↵Further research into C. coli RM4661 may elucidate its specific roles in nutrient cycling or its interactions within microbial communities, providing insights into the ecological dynamics of the environments it inhabits. Understanding these traits can enhance our knowledge of how such microbes influence both health and disease in their respective hosts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 1183379 NZ_CP007181.1 Bac0015760 Sulfurospirillum multivorans DSM 12446 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum multivorans anaerobic 1150621 NZ_CP007201.1 Bac0015761 Siansivirga zeaxanthinifaciens CC-SAMT-1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Siansivirga Siansivirga zeaxanthinifaciens 1454006 NZ_CP007202.1 Bac0015762 Mesomycoplasma dispar strain ATCC 27140 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma dispar 86660 NZ_CP007229.1 Bac0015763 Ensifer adhaerens OV14 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer adhaerens 1416753 NZ_CP007236.1 Bac0015764 Ectothiorhodospira haloalkaliphila strain Halorhodospira Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Ectothiorhodospira Ectothiorhodospira haloalkaliphila 421628 NZ_CP007268.1 Bac0015765 Bacillus pumilus strain B6033 "Bacillus pumilus strain B6033 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and thrives in terrestrial habitats as an aerobic organism. This strain's ability to form spores allows it to endure extreme environmental conditions, which is characteristic of the Bacillus genus. Its aerobic nature indicates that it relies on oxygen for metabolic processes, positioning it within environments rich in oxygen. ↵↵The terrestrial habitat of Bacillus pumilus strain B6033 suggests its potential role in soil ecosystems, where it may contribute to nutrient cycling and organic matter decomposition. The sporulation trait is particularly significant for survival in fluctuating environmental conditions, enabling the bacterium to remain viable during periods of nutrient scarcity or adverse conditions. ↵↵Overall, the unique combination of traits exhibited by Bacillus pumilus strain B6033 reflects its adaptation to terrestrial environments, potentially influencing its interactions within soil microbial communities and its contributions to ecological processes such as soil health and fertility." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 NZ_CP007436.1 Bac0015766 Stutzerimonas stutzeri strain 28a24 "Stutzerimonas stutzeri strain 28a24 is a Gram-negative, rod-shaped bacterium that occurs as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source. Stutzerimonas stutzeri strain 28a24 is an aerobe, indicating that it requires oxygen for its metabolic processes.↵↵The habitat of this strain is notable for being host-associated, which suggests its potential role in symbiotic or commensal relationships within specific biological systems. The single-cell arrangement may facilitate its interaction with host tissues or other microbial communities, allowing for specific ecological niches where it can thrive. ↵↵Understanding the traits of Stutzerimonas stutzeri strain 28a24 can provide insights into its potential functions in its host environment, particularly in terms of nutrient cycling or interaction with other microorganisms. Further studies could elucidate the specific ecological roles this strain plays in its habitat, especially regarding its interactions with host organisms and its contributions to the overall microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NZ_CP007441.1 Bac0015767 Bifidobacterium adolescentis strain 22L "Bifidobacterium adolescentis strain 22L is a Gram-positive, nonsporulating anaerobic bacterium characterized by its rod shape and occurrence as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the host gastrointestinal tract. As a member of the Bifidobacterium genus, it is typically associated with beneficial roles in the microbiota of various hosts, although specific interactions and functions in the context of strain 22L remain to be thoroughly elucidated.↵↵The anaerobic nature of Bifidobacterium adolescentis strain 22L suggests its adaptation to low-oxygen environments, which is conducive to its survival and functionality within the intestines of mammals. This metabolic specialization may allow the strain to contribute to the fermentation of dietary fibers and the production of short-chain fatty acids, which play critical roles in maintaining gut health and influencing host metabolism. ↵↵Given its host-associated habitat and specific growth requirements, Bifidobacterium adolescentis strain 22L exemplifies the intricate relationships between gut microbiota and host health. Further research into this strain could provide insights into its potential prebiotic effects, highlighting the importance of specific bacterial strains in the modulation of the gut microbiome and overall well-being." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 NZ_CP007443.1 Bac0015768 Snodgrassella alvi wkB2 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Snodgrassella Snodgrassella alvi 1196094 NZ_CP007446.1 Bac0015769 Draconibacterium orientale strain Draconibacterium orientale type Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Draconibacterium Draconibacterium orientale 1168034 NZ_CP007451.1 Bac0015770 Peptoclostridium acidaminophilum DSM 3953 strain al-2 "Peptoclostridium acidaminophilum DSM 3953 strain al-2 is a Gram-positive bacterium characterized by its curved or spiral morphology and its non-spore-forming nature. This strain is part of the genus Peptoclostridium, which is known for its role in various biochemical processes, particularly in the fermentation of amino acids. ↵↵The Gram-positive nature of P. acidaminophilum indicates a thick peptidoglycan layer in its cell wall, which is typical of this group of bacteria and may contribute to its structural integrity and environmental resilience. The curved or spiral shape of this organism suggests a possible adaptation for mobility or interaction within complex microbial communities, although specific motility traits are not provided.↵↵As a non-spore-forming bacterium, P. acidaminophilum DSM 3953 strain al-2 relies on its metabolic capabilities rather than sporulation for survival in fluctuating environmental conditions. This trait may influence its ecological interactions, particularly in nutrient-rich environments where competition with other microorganisms occurs. ↵↵Overall, the traits of Peptoclostridium acidaminophilum DSM 3953 strain al-2 suggest its potential role in amino acid metabolism within microbial communities, contributing to nutrient cycling and possibly influencing the dynamics of microbial consortia in various ecological niches." Bacillati Bacillota Clostridia Peptostreptococcales Peptoclostridiaceae Peptoclostridium Peptoclostridium acidaminophilum Gram-positive curved/spiral non-spore-forming 1731 NZ_CP007452.1 Bac0015771 Bifidobacterium catenulatum PV20-2 "Bifidobacterium catenulatum PV20-2 is a Gram-positive, anaerobic bacterium belonging to the genus Bifidobacterium. This species is characterized by its anaerobic metabolism, indicating that it thrives in environments devoid of oxygen, which is typical for many members of the Bifidobacterium genus. As a representative of this group, B. catenulatum PV20-2 is likely involved in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids (SCFAs) that play a crucial role in gut health and host metabolism.↵↵The anaerobic nature of B. catenulatum PV20-2 suggests its ecological niche within the human gut, where it may contribute to maintaining a balanced microbiota. Its Gram-positive cell wall structure may also provide insights into its resilience and interactions with the gut environment, potentially influencing its ability to adhere to intestinal surfaces and participate in microbial community dynamics. ↵↵Understanding the traits of Bifidobacterium catenulatum PV20-2 can enhance our knowledge of its role in gut microbiota composition and function, underpinning its potential applications in probiotics and gut health management. Further research could elucidate its specific contributions to fermentation processes and interactions with other gut microorganisms, which are essential for maintaining gastrointestinal homeostasis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium catenulatum Positive Anaerobe 1686 NZ_CP007456.1 Bac0015772 Ehrlichia japonica strain HF Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Ehrlichia Ehrlichia japonica 391036 NZ_CP007474.1 Bac0015773 Escherichia coli strain ACN002 "Escherichia coli strain ACN002 is a Gram-negative, rod-shaped bacterium that typically exists in a host-associated environment. This strain exhibits a cell arrangement characterized by singles and pairs, which is common among many members of the Enterobacteriaceae family. The optimal growth temperature for E. coli strain ACN002 is approximately 37.0°C, aligning with the physiological temperature of many warm-blooded hosts.↵↵As a facultative anaerobe, E. coli strain ACN002 is capable of thriving in both aerobic and anaerobic conditions, allowing it to adapt to varying environments within the host. This metabolic versatility enables the strain to utilize different substrates for energy production, which may contribute to its survival in diverse niches within the host organism.↵↵Given its host-associated habitat and the ability to grow under varying oxygen conditions, E. coli strain ACN002 may play a role in the microbial community dynamics within the gastrointestinal tract or other host-associated environments. This adaptability highlights the importance of E. coli strains in nutrient cycling and their potential influence on host health and disease processes, although specific interactions and implications require further investigation to elucidate their ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP007491.1 Bac0015774 Aggregatibacter actinomycetemcomitans HK1651 "Aggregatibacter actinomycetemcomitans HK1651 is a nonsporulating, Gram-negative rod that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This microbe thrives optimally at 37°C, which aligns with the physiological temperature of its primary habitat, the host gut. As a facultative anaerobe, A. actinomycetemcomitans HK1651 can adapt to both aerobic and anaerobic environments, allowing it to survive and proliferate in the diverse oxygen conditions found within the gut microbiome.↵↵This organism's presence in the gut suggests a potential role in the complex interactions of gut microbiota, where it may contribute to metabolic processes or influence the health of the host. The adaptability of A. actinomycetemcomitans HK1651 to varying oxygen levels may also provide insights into its survival strategies in the competitive gut ecosystem. Further investigation into its interactions with other gut microbes and its influence on host physiology could reveal important ecological dynamics and potential applications in microbiome research." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter actinomycetemcomitans Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 272556 NZ_CP007502.1 Bac0015775 Stutzerimonas decontaminans strain 19SMN4 "Stutzerimonas decontaminans strain 19SMN4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy. It is an aerobic organism, requiring oxygen for its metabolic processes, which suggests its potential involvement in environments where oxygen is readily available.↵↵The habitat of Stutzerimonas decontaminans strain 19SMN4 is noted to be host-associated, implying that it may inhabit specific niches within a host organism or be associated with biological systems where it might play a role in microbial community dynamics. The presence of this strain in a host-associated environment could suggest potential interactions with the host's biological systems or other microorganisms present in the same habitat.↵↵Further research into the ecological roles of strain 19SMN4 may provide insights into its functional contributions, such as its involvement in bioremediation processes or its potential use in environmental decontamination strategies. Understanding the specific metabolic pathways utilized by this strain could elucidate its importance in nutrient cycling or in maintaining microbial diversity within its associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas decontaminans Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 3022791 NZ_CP007509.1 Bac0015776 Bacillus bombysepticus str. Wang Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus bombysepticus 1330043 NZ_CP007513.1 Bac0015777 Mycoplasma yeatsii GM274B Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii 743967 NZ_CP007520.1 Bac0015778 Neisseria meningitidis strain 510612 "Neisseria meningitidis strain 510612 is a Gram-negative cocci bacterium that typically exists in pairs and is classified as an aerobe, thriving optimally at a temperature of 35.0°C. This strain is host-associated, indicating a close relationship with its host organisms, which is characteristic of many members of the genus Neisseria.↵↵The Gram-negative cell wall structure of N. meningitidis is notable for its thin peptidoglycan layer, surrounded by an outer membrane containing lipopolysaccharides, which can play a significant role in its interaction with host immune systems. The coccoid morphology and paired arrangement of these cells suggest a potential for rapid division and colonization, characteristics that may contribute to the microbe's persistence in host environments.↵↵The optimal growth temperature of 35.0°C aligns with the physiological conditions found in the human body, particularly within the nasopharyngeal region, which serves as a common ecological niche for this organism. As an aerobe, N. meningitidis strain 510612 requires oxygen for its metabolic processes, further emphasizing its adaptation to environments where oxygen is readily available.↵↵Overall, the traits of Neisseria meningitidis strain 510612 highlight its specialized adaptations to a host-associated lifestyle, with implications for its role in human health and disease. Understanding these characteristics may provide insights into the specific environmental conditions that favor its survival and proliferation within host organisms." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 NZ_CP007524.1 Bac0015779 Nitrososphaera viennensis EN76 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera viennensis 926571 NZ_CP007536.1 Bac0015780 Treponema pallidum subsp. endemicum str. Bosnia A "Treponema pallidum subsp. endemicum str. Bosnia A is a Gram-negative, anaerobic spirillum that typically exists in a host-associated habitat. This microbe is characterized by its distinct spiral shape and is observed as single cells rather than in clusters or chains. T. pallidum subsp. endemicum, as part of the larger Treponema genus, is known for its unique adaptation to anaerobic environments, which may influence its metabolic pathways and interactions with host organisms.↵↵The organism's Gram-negative cell wall structure contributes to its resilience in various environments, although it thrives specifically in host-associated niches. Understanding the specific adaptations of T. pallidum subsp. endemicum str. Bosnia A to anaerobic conditions can provide insights into its survival mechanisms and potential interactions with the host's immune system. Additionally, the solitary arrangement of cells suggests a potential strategy for evading host defenses, as individual cells may be less detectable than those in larger aggregates. This trait may also reflect its ecological role within its host, emphasizing the importance of studying individual cellular behaviors in understanding the broader context of Treponema's biology and its implications for host health." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema pallidum Negative Spirilla No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 1155776 NZ_CP007548.1 Bac0015781 Streptococcus agalactiae strain GBS6 "Streptococcus agalactiae strain GBS6 is a Gram-positive cocci that typically presents in chains or pairs, exhibiting a facultative anaerobic metabolism. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. ↵↵As a member of the Streptococcus genus, GBS6 shares common characteristics with its relatives, including its morphology and Gram-staining properties. The arrangement of cells in chains or pairs may facilitate specific interactions within its ecological niche, potentially influencing its behavior and interactions with host organisms. ↵↵The facultative anaerobic nature of this strain indicates its ability to survive in both aerobic and anaerobic environments, which may enhance its adaptability to various host conditions or tissue environments. Such metabolic versatility is critical for survival, particularly in fluctuating oxygen levels encountered within host tissues. ↵↵Understanding the physiological traits of Streptococcus agalactiae strain GBS6 provides insight into its potential roles within the microbiome of host organisms, where it may contribute to interspecies interactions and overall microbial community dynamics. The strain's optimal growth temperature further underscores its evolutionary specialization for life in a host-associated environment, reflecting a long-term association with warm-blooded animals." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1311 NZ_CP007572.1 Bac0015782 Mesomycoplasma flocculare ATCC 27399 strain Ms42 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma flocculare 2128 NZ_CP007585.1 Bac0015783 Streptococcus pneumoniae strain NT_110_58 "Streptococcus pneumoniae strain NT_110_58 is a Gram-positive coccus that typically appears in pairs and chains. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth for this strain occurs at a temperature of 30.0°C, indicating a preference for moderate thermal conditions. ↵↵S. pneumoniae is known to inhabit a variety of ecological niches, suggesting its adaptability to diverse habitats. The presence of this strain in multiple environments may reflect its potential roles in microbial communities, possibly contributing to nutrient cycling or interactions with other microorganisms. Given its arrangement in pairs and chains, S. pneumoniae can form biofilms that may play a role in its ecological interactions. Such structural arrangements can enhance its resilience and survival in fluctuating conditions, which is particularly relevant for its persistence in various habitats where it may encounter different stresses. ↵↵In summary, the traits of Streptococcus pneumoniae strain NT_110_58 illustrate its adaptability and potential ecological versatility, which may contribute to its survival in diverse environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 NZ_CP007593.1 Bac0015784 Stenotrophomonas rhizophila strain DSM 14405 "Stenotrophomonas rhizophila strain DSM 14405 is a Gram-negative, nonsporulating rod-shaped bacterium classified as a chemoheterotroph, indicating its reliance on organic compounds for energy. This strain exhibits anaerobic growth, thriving in environments devoid of oxygen, which suggests a potential adaptability to various ecological niches. S. rhizophila has been isolated from multiple habitats, reflecting its versatility and ecological resilience.↵↵The nonsporulating nature of this strain implies that it does not form spores as a survival strategy, which may influence its ecological interactions and survival in fluctuating environments. Understanding the metabolic capabilities of S. rhizophila, particularly its anaerobic lifestyle and chemoheterotrophic metabolism, can provide insights into its role in nutrient cycling and organic matter decomposition in diverse habitats. ↵↵Given its adaptability and metabolic characteristics, Stenotrophomonas rhizophila strain DSM 14405 may play a significant role in anaerobic ecosystems, contributing to the breakdown of complex organic materials and the maintenance of microbial diversity within those environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas rhizophila Negative Rod Yes 1 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 216778 NZ_CP007597.1 Bac0015785 Helicobacter pylori strain BM013A "Helicobacter pylori strain BM013A is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found in the stomach of its host organisms. As a microaerophilic organism, H. pylori strain BM013A requires reduced levels of oxygen for growth, indicating its adaptation to the oxygen-poor environment of the gastric mucosa.↵↵The habitat of H. pylori strain BM013A is notably host-associated, suggesting a close relationship with its host's gastrointestinal tract, where it may play a role in various physiological processes. The unique combination of its Gram-negative cell wall structure, spiral morphology, and microaerophilic nature allows this strain to colonize the acidic environment of the stomach effectively, potentially influencing local microbiota and host interactions.↵↵Understanding the specific adaptations of H. pylori strain BM013A within its host environment could provide insights into its ecological niche and the dynamics of host-microbe interactions in the gastric ecosystem. The strain's microaerophilic requirement may also reflect evolutionary strategies that allow it to survive and proliferate in a habitat characterized by fluctuating oxygen levels and high acidity, highlighting its remarkable adaptation to a challenging environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP007604.1 Bac0015786 Pseudomonas putida strain DLL-E4 "Pseudomonas putida strain DLL-E4 is a Gram-negative, rod-shaped bacterium that exists as single cells and demonstrates facultative anaerobic metabolism, allowing it to thrive in various oxygen conditions. This nonsporulating microbe is classified as a heterotroph, deriving its energy from organic compounds, and is predominantly found in soil and wastewater environments.↵↵Due to its metabolic versatility, Pseudomonas putida strain DLL-E4 is well-adapted to nutrient-rich habitats often associated with organic waste. Its ability to utilize a wide range of substrates enhances its potential for bioremediation applications, where it may play a role in degrading environmental pollutants. The strain's presence in wastewater suggests a capacity for contributing to the microbial dynamics essential for nutrient cycling and organic matter decomposition in such ecosystems.↵↵The adaptability of Pseudomonas putida strain DLL-E4 to varying oxygen levels is particularly noteworthy, as it enables the organism to occupy niches where oxygen availability fluctuates, further supporting its ecological role in soil and wastewater systems. This trait may facilitate its interactions with other microbial communities, potentially influencing biodegradation processes and nutrient availability in its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP007620.1 Bac0015787 Flavobacterium psychrophilum strain CSF259-93 "Flavobacterium psychrophilum strain CSF259-93 is a nonsporulating rod-shaped bacterium that thrives optimally at a temperature of 15.0°C. As a chemoheterotroph, it derives its energy from organic compounds, which suggests a versatile metabolic capability that enables it to exploit various substrates in its environment. This strain is typically found in multiple habitats, indicating a broad ecological distribution and potential adaptability to different environmental conditions.↵↵The ability to thrive at low temperatures is particularly noteworthy, as it suggests that F. psychrophilum may play a significant role in cold-water ecosystems, potentially influencing nutrient cycling and organic matter decomposition in these habitats. Its presence in diverse environments might also indicate its ecological versatility, allowing it to interact with various microbial communities and contribute to the overall dynamics of the ecosystems it inhabits. Further research into its metabolic pathways and ecological interactions could provide deeper insights into its role within cold-water environments and its potential applications in biotechnology or environmental microbiology." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum Rod No 1 15 Chemoheterotroph Psychrophilic Multiple Nonsporulating 96345 NZ_CP007627.1 Bac0015788 Rhizobium etli bv. phaseoli str. IE4803 "Rhizobium etli bv. phaseoli str. IE4803 is a Gram-negative, rod-shaped bacterium that exists primarily in a host-associated habitat. This strain is characterized by its arrangement in singles and demonstrates an aerobic metabolism, indicating its reliance on oxygen for growth and energy production. ↵↵As a member of the Rhizobium genus, R. etli bv. phaseoli str. IE4803 is known for its symbiotic relationships with legumes, particularly in the root nodules of Phaseolus vulgaris, more commonly known as common beans. This interaction is crucial for nitrogen fixation, where the bacterium converts atmospheric nitrogen into a form that is accessible to plants, thereby enhancing soil fertility and supporting plant growth.↵↵The ability of R. etli bv. phaseoli str. IE4803 to thrive in aerobic environments suggests its adaptation to the oxygen-rich conditions found in root nodules and surrounding soil. This adaptation may also play a role in its metabolic processes and overall fitness within its plant host. Understanding the traits of this strain can provide insights into its contributions to sustainable agricultural practices, particularly in the cultivation of nitrogen-efficient legume crops." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium etli Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Symbiotic Singles 1432049 NZ_CP007641.1 Bac0015789 Ligilactobacillus salivarius strain JCM1046 "Ligilactobacillus salivarius strain JCM1046 is a Gram-positive, non-sporulating rod-shaped bacterium classified within the Ligilactobacillus genus. This strain is characterized as a facultative anaerobe, indicating its ability to grow in both oxygen-rich and oxygen-poor environments. It is known to inhabit host-associated environments, suggesting a close relationship with its host, which may influence its growth and metabolic activities.↵↵The facultative anaerobic nature of L. salivarius JCM1046 allows it to thrive in various microbial communities, particularly in the gastrointestinal tracts of mammals, where it may play a role in digestion and maintaining gut health. Its Gram-positive cell wall structure may also confer resilience against certain environmental stresses, potentially aiding its survival in the competitive microbial ecosystems found within host organisms.↵↵Further studies into the specific interactions between L. salivarius JCM1046 and its host could provide insights into its potential contributions to host health, particularly in the context of microbiome dynamics and the modulation of immune responses. Understanding these interactions may reveal important ecological roles that this strain fulfills in its natural habitat, enhancing our knowledge of host-microbe relationships." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NZ_CP007649.1 Bac0015790 Vibrio cholerae strain TSY216 "Vibrio cholerae strain TSY216 is a Gram-negative, rod-shaped bacterium characterized by its arrangement in single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. As a heterotroph, Vibrio cholerae strain TSY216 obtains its energy by metabolizing organic compounds, which contributes to its adaptability in diverse habitats.↵↵The optimal growth temperature for this strain is approximately 20.0 degrees Celsius, suggesting a preference for cooler environments. This temperature range may indicate its ecological niche, possibly aligning with habitats such as coastal waters or estuarine systems where nutrient availability is influenced by temperature and organic matter influx.↵↵The ability of Vibrio cholerae strain TSY216 to occupy multiple habitats highlights its ecological versatility, potentially allowing it to interact with various microbial communities and contribute to biogeochemical cycles. Understanding the specific environmental adaptations of this strain can provide insights into its role in microbial dynamics and its potential responses to changing environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 NZ_CP007653.1 Bac0015791 Actinobacillus equuli subsp. equuli strain 19392 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus equuli microaerophile 718 NZ_CP007715.1 Bac0015792 Prochlorococcus sp. MIT 0801 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 0801 1501269 NZ_CP007754.1 Bac0015793 Halomonas campaniensis strain LS21 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas campaniensis aerobic 213554 NZ_CP007757.1 Bac0015794 Campylobacter insulaenigrae NCTC 12927 "Campylobacter insulaenigrae NCTC 12927 is a Gram-negative, rod-shaped bacterium that requires microaerophilic conditions for optimal growth. This species is characterized by its non-spore-forming nature, which is common among members of the Campylobacter genus. The microaerophilic requirement indicates that C. insulaenigrae thrives in environments with reduced oxygen levels, typically around 5-10% oxygen, which is lower than that found in atmospheric air.↵↵C. insulaenigrae is part of a group of bacteria well-known for their association with gastrointestinal infections, often linked to undercooked poultry or contaminated water; however, specific pathogenicity traits for this strain remain to be elucidated. The rod shape is a defining morphological feature that contributes to its motility, allowing the organism to navigate through viscous environments such as mucus layers in the intestinal tract.↵↵Interestingly, the microaerophilic lifestyle of Campylobacter species, including C. insulaenigrae, may provide an ecological advantage in the gastrointestinal tracts of various hosts, where oxygen levels are typically low. This adaptation not only allows for colonization in such niches but may also influence the microbial community structure and interactions within these environments. Further study of C. insulaenigrae could reveal more about its role in these complex ecosystems and contribute to our understanding of Campylobacter’s ecological diversity." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter insulaenigrae Gram-negative rod microaerophile non-spore-forming 1031564 NZ_CP007770.1 Bac0015795 Burkholderia cenocepacia strain DDS 22E-1 "Burkholderia cenocepacia strain DDS 22E-1 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic metabolism and nonsporulating nature. This microorganism has been isolated from multiple habitats, indicating a versatile ecological adaptability. The Gram-negative cell wall structure of B. cenocepacia is indicative of its unique physiological traits, which may contribute to its survival in diverse environments.↵↵Facultative aerobes like strain DDS 22E-1 can thrive in both aerobic and anaerobic conditions, allowing them to exploit a range of ecological niches. This adaptability not only enhances their survival but may also facilitate their role in nutrient cycling and biodegradation processes in the environments they inhabit. ↵↵Understanding the ecological roles of Burkholderia cenocepacia strain DDS 22E-1 could provide insights into the interactions it may have with other microbial communities, particularly in environments where oxygen levels fluctuate. The ability to thrive under varying conditions suggests potential applications in bioremediation or as a model organism to study microbial community dynamics in complex ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 NZ_CP007782.1 Bac0015796 Burkholderia cepacia strain DDS 7H-2 "Burkholderia cepacia strain DDS 7H-2 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement. This strain's Gram-negative status indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that may influence its interactions within various environments. The microaerophilic nature of DDS 7H-2 suggests that it thrives in environments with low oxygen concentrations, which may be indicative of its ecological niches, such as waterlogged soils or biofilms associated with plant roots.↵↵The adaptability of Burkholderia cepacia strain DDS 7H-2 to microaerobic conditions may confer advantages in specific habitats where oxygen levels fluctuate. This trait allows the strain to exploit niches that are less accessible to strictly aerobic or anaerobic organisms, potentially positioning it as a player in nutrient cycling or biodegradation processes within these environments. Further investigation into the metabolic pathways utilized by DDS 7H-2 under microaerophilic conditions could yield insights into its ecological role and potential applications in bioremediation or agriculture." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 NZ_CP007785.1 Bac0015797 Azospirillum argentinense strain Az39 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense 2970906 NZ_CP007794.1 Bac0015798 Acinetobacter baumannii strain AB5075-UW "Acinetobacter baumannii strain AB5075-UW is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits a chemoheterotrophic lifestyle, utilizing organic compounds as energy sources, and is capable of aerobic respiration, indicating its requirement for oxygen in metabolic processes. Its optimal growth temperature is 37.0°C, suggesting a preference for human-associated environments or conditions that mimic mammalian body temperatures.↵↵The habitat of A. baumannii is diverse, allowing it to thrive in various ecological niches. This adaptability may contribute to its persistence in hospital settings and other environments where it can exploit available nutrients. The strain's status as a heterotroph underscores its reliance on organic matter for energy, which is pivotal for its survival in nutrient-variable conditions.↵↵Given its significant metabolic versatility and ability to inhabit multiple environments, A. baumannii strain AB5075-UW may play a role in biogeochemical cycles where organic matter is abundant. Understanding its ecological interactions and metabolic capabilities could provide insights into its resilience and adaptability in both natural and anthropogenic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP008708.1 Bac0015799 Metamycoplasma hyosynoviae strain M60 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hyosynoviae 29559 NZ_CP008748.1 Bac0015800 Metallosphaera sedula strain CuR1 "Metallosphaera sedula strain CuR1 is a Gram-negative coccus that typically exists as single cells and thrives in specialized habitats at an optimal temperature of 70.0°C. As an aerobic organism, this strain requires oxygen for its metabolic processes, aligning with its adaptation to high-temperature environments where oxygen availability can vary.↵↵The morphological characteristic of being coccoid suggests that strain CuR1 may possess structural adaptations that help it maintain integrity and functionality in extreme thermal conditions. The ability to exist as isolated cells rather than in clusters or chains could confer advantages in nutrient acquisition or competition within its specialized habitat.↵↵Metallosphaera sedula strain CuR1's preference for elevated temperatures and aerobic conditions indicates a potential role in biogeochemical cycling in hot environments, such as geothermal springs or hydrothermal vents, where other microbial life forms may struggle to survive. Understanding the physiological traits of this strain can provide insights into its ecological niche and the metabolic pathways it employs to thrive in such extreme conditions. Such knowledge may also inform biotechnological applications, particularly in the fields of bioleaching and bioremediation, where thermophilic microbes play a crucial role in the recovery of metals and the degradation of pollutants." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles 43687 NZ_CP008822.1 Bac0015801 Alteromonas australica strain H 17 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas australica 589873 NZ_CP008849.1 Bac0015802 Halanaeroarchaeum sulfurireducens strain HSR2 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens 1604004 NZ_CP008874.1 Bac0015803 Dyella japonica A8 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella japonica 1217721 NZ_CP008884.1 Bac0015804 Geobacillus sp. LC300 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. LC300 1519377 NZ_CP008903.1 Bac0015805 Klebsiella pneumoniae strain PMK1 "Klebsiella pneumoniae strain PMK1 is a Gram-negative, non-sporulating rod-shaped bacterium that typically exists in various arrangements, including pairs, chains, and singles. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which aligns with its habitat, typically associated with host organisms. K. pneumoniae strain PMK1 thrives optimally at a temperature of 37.0°C, a condition often found within the mammalian body, suggesting its adaptation to a host-associated lifestyle.↵↵As a facultative anaerobe, K. pneumoniae strain PMK1 is capable of surviving in both aerobic and anaerobic environments, allowing it to exploit a range of ecological niches within host systems. The ability to maintain metabolic flexibility is advantageous for survival in diverse conditions, such as the fluctuating oxygen levels encountered in various tissues and during immune responses.↵↵The presence of K. pneumoniae strain PMK1 in host-associated habitats may play a role in the complex interactions between microbial communities and their hosts, potentially influencing host health and disease states. Understanding the ecological dynamics of this strain could provide insights into its contributions to the microbiome and its implications for host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP008929.1 Bac0015806 Geobacillus stearothermophilus 10 "Geobacillus stearothermophilus 10 is a rod-shaped, aerobic bacterium characterized by its variable Gram staining properties. This organism is notable for its ability to thrive at elevated temperatures, which is typical for members of the Geobacillus genus, known for their thermophilic nature. G. stearothermophilus 10 has been extensively studied for its role in various industrial applications, particularly in the food and pharmaceutical sectors, where it serves as a biological indicator for sterilization processes due to its heat resistance.↵↵As an aerobic organism, G. stearothermophilus 10 requires oxygen for growth, which influences its metabolic pathways and ecological interactions. The presence of aerobic respiration allows this microbe to efficiently utilize organic substrates in environments that provide adequate oxygen, potentially contributing to nutrient cycling in thermal ecosystems. ↵↵This bacterium’s adaptability to high temperatures and oxygen availability suggests that it may play a significant role in the decomposition of organic matter in thermophilic environments, such as hot springs or compost heaps, where its metabolic activities can help in breaking down complex organic compounds. Thus, G. stearothermophilus 10 exemplifies the intricate relationships between microbial life and extreme environmental conditions, highlighting the ecological significance of thermophilic bacteria in nutrient recycling processes." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe 272567 NZ_CP008934.1 Bac0015807 Rhodococcus opacus strain R7 "Rhodococcus opacus strain R7 is a Gram-positive bacterium characterized by its coccoid shape and filamentous cell arrangement. This strain is an obligate aerobe, requiring oxygen for its metabolic processes. R. opacus is known for its ability to degrade a variety of organic compounds, suggesting a potential role in bioremediation and environmental cleanup applications. ↵↵The filamentous arrangement of R. opacus strain R7 may contribute to its adaptability in diverse ecological niches, allowing for enhanced surface area for nutrient absorption and potential interactions with other microorganisms. The presence of aerobic respiration mechanisms indicates that this strain can thrive in oxygen-rich environments, which may influence its ecological distribution and interactions within microbial communities.↵↵Furthermore, the ability of R. opacus to utilize various organic substrates as a carbon source highlights its metabolic versatility. This trait may enable the strain to colonize environments where organic pollution is prevalent, thus positioning it as a candidate for further research in biotechnological applications aimed at environmental remediation. The unique combination of its filamentous growth and aerobic lifestyle may also facilitate cooperative behaviors in microbial consortia, underscoring the ecological importance of R. opacus strain R7 in natural and engineered ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 37919 NZ_CP008947.1 Bac0015808 Pseudomonas alkylphenolica strain KL28 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas alkylphenolica 237609 NZ_CP009048.1 Bac0015809 Escherichia coli NCCP15648 "Escherichia coli NCCP15648 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, which allows it to thrive in environments with or without oxygen. E. coli NCCP15648 has an optimal growth temperature of 37.0°C, aligning with the typical physiological conditions of mammalian hosts. ↵↵As a member of the Enterobacteriaceae family, this strain is primarily found in host-associated habitats, indicating its potential role in the microbiota of various organisms. The facultative anaerobic nature of E. coli NCCP15648 suggests that it can adapt to both aerobic and anaerobic environments, which may enhance its survival and functional capabilities within the host gut microbiome. ↵↵The adaptability of E. coli NCCP15648 to varying oxygen levels may provide insights into its metabolic versatility and ecological interactions. Such traits may contribute to its ability to occupy diverse niches within host-associated environments, potentially influencing host health and microbiome dynamics. Understanding the specific ecological roles and behaviors of this strain could lead to broader implications for its function in microbial communities and its interactions with host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1200752 NZ_CP009050.1 Bac0015810 Escherichia coli strain 94-3024 "Escherichia coli strain 94-3024 is a Gram-negative, rod-shaped bacterium that primarily exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that coincides with the physiological conditions of many mammalian hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 94-3024 is capable of growth in both the presence and absence of oxygen, allowing it to exploit a wide range of environments within its host.↵↵The ability of E. coli strain 94-3024 to exist in pairs or as single cells may influence its interactions within the host environment, potentially affecting its colonization dynamics and nutrient acquisition strategies. The facultative anaerobic metabolism further enables this strain to adapt to varying oxygen levels that may be encountered in different niches within the host. Understanding the traits of strain 94-3024 can provide insights into its ecological role and metabolic versatility, highlighting the adaptability of E. coli within diverse host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP009106.2 Bac0015811 Rhodococcus opacus strain 1CP "Rhodococcus opacus strain 1CP is a Gram-positive bacterium characterized by its cocci shape and filamentous cell arrangement. As an aerobic organism, it requires oxygen for growth and metabolism, positioning it within environments where oxygen is readily available. ↵↵The filamentous arrangement of cells in this strain may suggest a potential for complex interactions within microbial communities, possibly facilitating nutrient exchange or bioproduct formation. While specific metabolic pathways and ecological roles of R. opacus strain 1CP are not detailed here, the genus Rhodococcus is known for its versatile metabolic capabilities, including the degradation of various organic compounds. ↵↵The filamentous morphology combined with its aerobic nature may confer advantages in biofilm formation, offering stability in fluctuating environments. This characteristic could enhance its survival and persistence in diverse ecological niches, such as soil or contaminated sites, where oxygen levels can vary. Overall, the traits of Rhodococcus opacus strain 1CP underscore its potential significance in bioremediation and other biotechnological applications, particularly in environments rich in organic pollutants." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus opacus Positive Cocci No 1 1 Aerobe Mesophilic Free living Filaments 37919 NZ_CP009113.1 Bac0015812 Sphingopyxis fribergensis strain Kp5.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis fribergensis 1515612 NZ_CP009122.1 Bac0015813 Planococcus sp. PAMC 21323 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus sp. PAMC 21323 1526927 NZ_CP009129.1 Bac0015814 Methanocaldococcus bathoardescens strain JH146 Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus bathoardescens 1301915 NZ_CP009149.1 Bac0015815 Thermoanaerobacter kivui strain LKT-1 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter kivui anaerobic 2325 NZ_CP009170.1 Bac0015816 Corynebacterium ureicelerivorans strain IMMIB RIV-2301 "Corynebacterium ureicelerivorans strain IMMIB RIV-2301 is a Gram-positive, non-spore-forming bacterium that exhibits microaerophilic characteristics, thriving optimally at a temperature of 37.0°C. This strain belongs to the genus Corynebacterium, which is known for its rod-shaped morphology and diverse metabolic capabilities. The microaerophilic nature of C. ureicelerivorans suggests a specific adaptation to environments with limited oxygen availability, potentially influencing its ecological interactions and niche specialization.↵↵The optimal growth temperature of 37.0°C indicates that this strain is well-suited for environments that closely mimic mammalian physiological conditions, which may be relevant to its ecological role. While specific pathogenicity or ecological roles have not been delineated in the available data, the traits observed in this strain could suggest a potential association with warm-blooded hosts or environments where organic matter decomposition occurs under restricted oxygen conditions.↵↵Given its microaerophilic lifestyle and optimal growth temperature, C. ureicelerivorans strain IMMIB RIV-2301 may play a role in nutrient cycling in environments such as soil or the gastrointestinal tracts of certain animals, where oxygen levels are lower than atmospheric. Further studies could elucidate its metabolic pathways and ecological interactions, enhancing our understanding of its role within microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ureicelerivorans Gram-positive non-motile microaerophile 37 mesophilic non-spore-forming 401472 NZ_CP009215.1 Bac0015817 Rickettsiales bacterium Ac37b Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiales bacterium Ac37b 1528098 NZ_CP009217.1 Bac0015818 Treponema sp. OMZ 838 strain OMZ 838 (ATCC 700772) Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 838 1539298 NZ_CP009227.1 Bac0015819 Treponema putidum strain OMZ 758 (ATCC 700334) Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema putidum 221027 NZ_CP009228.1 Bac0015820 Corynebacterium aquilae DSM 44791 strain S-613 "Corynebacterium aquilae DSM 44791 strain S-613 is a Gram-positive, rod-shaped bacterium that is characterized as non-spore-forming. As a member of the genus Corynebacterium, this strain exhibits the typical morphological features associated with its relatives, including a distinct club-shaped appearance, although specific cellular arrangements may vary. The Gram-positive nature of C. aquilae indicates a thick peptidoglycan layer in its cell wall, which is a hallmark of this group of bacteria and may contribute to its resilience in various environments.↵↵While the ecological niche of C. aquilae DSM 44791 strain S-613 has not been fully elucidated, members of the Corynebacterium genus are often found in diverse habitats, including soil and various animal hosts, suggesting a potential role in microbial communities. The absence of sporulation indicates that this strain may rely on other survival strategies in adverse conditions, such as metabolic versatility or the ability to form biofilms. Understanding its biological characteristics and ecological interactions could provide insights into its role in specific environments, particularly in relation to nutrient cycling and microbial community dynamics. Further research into the metabolic pathways and environmental adaptability of C. aquilae could enhance our understanding of its significance in microbial ecology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium aquilae Gram-positive rod non-motile non-spore-forming 203263 NZ_CP009245.1 Bac0015821 Corynebacterium flavescens strain OJ8 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium flavescens 29 mesophilic 28028 NZ_CP009246.1 Bac0015822 Corynebacterium phocae strain M408/89/1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium phocae 161895 NZ_CP009250.1 Bac0015823 Escherichia coli BW25113 strain K-12 "Escherichia coli BW25113 strain K-12 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is notably adapted to a host-associated habitat, reflecting its common presence in the intestines of warm-blooded organisms. E. coli BW25113 K-12 is a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which contributes to its versatility in various environments.↵↵The optimal growth temperature for this strain is around 37.0°C, aligning with the typical body temperature of its host organisms, further emphasizing its adaptation to a host-associated lifestyle. This strain serves as a model organism in molecular biology and genetic studies due to its well-characterized genome and the ease with which it can be manipulated in laboratory settings.↵↵The ecological significance of E. coli BW25113 K-12 extends beyond its role as a gut inhabitant; it is involved in nutrient cycling and can impact the microbiome composition of its host. Understanding the traits of this strain can offer insights into the dynamics of microbial communities in host-associated habitats and the potential implications for health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP009273.1 Bac0015824 Paenibacillus sp. FSL R5-0912 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R5-0912 1536771 NZ_CP009282.1 Bac0015825 Paenibacillus sp. FSL R7-0331 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. FSL R7-0331 1536773 NZ_CP009284.1 Bac0015826 Paenibacillus stellifer strain DSM 14472 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus stellifer aerobic 169760 NZ_CP009286.1 Bac0015827 Paenibacillus durus strain DSM 1735 "Paenibacillus durus strain DSM 1735 is a rod-shaped bacterium belonging to the genus Paenibacillus. This strain is characterized by its notable resilience and adaptability, which may contribute to its survival in various environments. Members of the Paenibacillus genus are often recognized for their diverse metabolic capabilities, which can include the degradation of complex organic materials, although specific metabolic traits for this strain are not provided.↵↵The rod shape of P. durus suggests a potential for motility and surface adherence, traits that may facilitate its interactions within microbial communities. While specific growth conditions and nutritional requirements for DSM 1735 are not detailed, related Paenibacillus species typically thrive in soil and plant-associated environments, indicating that strain DSM 1735 may play a role in soil ecology and nutrient cycling.↵↵Furthermore, the presence of Paenibacillus species in various habitats typically indicates their involvement in biogeochemical processes, such as nitrogen fixation or organic matter decomposition. This suggests that P. durus strain DSM 1735 could contribute positively to soil health and fertility, enhancing plant growth through microbial interactions. Overall, while specific ecological roles remain to be fully elucidated, the rod morphology of P. durus strain DSM 1735 hints at its potential adaptability and significance within its ecological niche." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus durus Rod 44251 NZ_CP009288.1 Bac0015828 Bacillus thuringiensis strain HD1011 "Bacillus thuringiensis strain HD1011 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain, like other members of the Bacillus genus, can survive in various environmental conditions due to its spore-forming capability, which allows it to endure adverse situations. B. thuringiensis is typically found in host-associated habitats, indicating its association with specific organisms or environments, which may influence its ecological roles and interactions.↵↵The facultative anaerobic nature of B. thuringiensis strain HD1011 suggests that it can thrive in both aerobic and anaerobic conditions, potentially allowing it to colonize diverse niches within host organisms. This metabolic flexibility may play a crucial role in its survival and adaptation to the fluctuating oxygen levels often present in host-associated environments.↵↵Furthermore, the sporulating ability of this strain is significant, as it not only contributes to its resilience but also indicates a potential for involvement in various biological processes within its habitat. Understanding the specific interactions of B. thuringiensis strain HD1011 with its host and the surrounding microbiota may provide insights into its ecological functions, such as nutrient cycling or competition with other microbial species. This highlights the potential importance of B. thuringiensis strain HD1011 in maintaining the balance within its microbial community." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP009332.1 Bac0015829 Yersinia frederiksenii Y225 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia frederiksenii 1454377 NZ_CP009363.1 Bac0015830 Bacillus cereus strain FM1 "Bacillus cereus strain FM1 is a Gram-positive, rod-shaped bacterium that typically forms chains and thrives in aerobic environments. This strain exhibits optimal growth at a temperature of 25.0°C, indicating a preference for moderate conditions that may be found in various habitats. ↵↵As a member of the Bacillus genus, B. cereus FM1 is known for its resilience and ability to occupy diverse ecological niches, suggesting a versatile metabolic capacity. Its aerobic nature implies that it relies on oxygen for growth, which may influence its distribution in environments where oxygen levels are sufficient. The organism's chain-forming arrangement may also be indicative of its reproductive strategy, which could facilitate colonization and adaptation to fluctuating environmental conditions.↵↵The presence of B. cereus strain FM1 in multiple habitats highlights its potential role in nutrient cycling and ecological interactions, making it an organism of interest for studies on microbial community dynamics and environmental microbiology. Understanding the specific conditions that favor the growth of this strain can provide deeper insights into its ecological significance and potential applications in biotechnology or bioremediation efforts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP009368.1 Bac0015831 Jeotgalibacillus malaysiensis strain malaysiensis Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Jeotgalibacillus Jeotgalibacillus malaysiensis 1508404 NZ_CP009416.1 Bac0015832 Sphingopyxis macrogoltabida strain 203 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis macrogoltabida 33050 NZ_CP009431.1 Bac0015833 Francisella philomiragia strain GA01-2794 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia 28110 NZ_CP009440.1 Bac0015834 Francisella philomiragia strain GA01-2801 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella philomiragia 28110 NZ_CP009444.1 Bac0015835 Cedecea neteri strain SSMD04 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea neteri 158822 NZ_CP009451.1 Bac0015836 Endomicrobium proavitum strain Rsa215 Pseudomonadati Elusimicrobiota Endomicrobiia Endomicrobiales Endomicrobiaceae Endomicrobium Endomicrobium proavitum 1408281 NZ_CP009498.1 Bac0015837 Methanosarcina thermophila TM-1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila 523844 NZ_CP009501.1 Bac0015838 Methanosarcina thermophila CHTI-55 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila 1434121 NZ_CP009502.1 Bac0015839 Methanosarcina sp. WWM596 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. WWM596 1434103 NZ_CP009503.1 Bac0015840 Methanosarcina sp. WH1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. WH1 1434102 NZ_CP009504.1 Bac0015841 Methanosarcina siciliae T4/M Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina siciliae 1434120 NZ_CP009506.1 Bac0015842 Methanosarcina siciliae C2J Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina siciliae 1434118 NZ_CP009508.1 Bac0015843 Methanococcoides methylutens MM1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides methylutens 1434104 NZ_CP009518.1 Bac0015844 Methanosarcina vacuolata Z-761 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina vacuolata 1434123 NZ_CP009519.1 Bac0015845 Methanosarcina barkeri str. Wiesmoor Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri 1434109 NZ_CP009525.1 Bac0015846 Methanosarcina barkeri MS Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri 1434108 NZ_CP009527.1 Bac0015847 Burkholderia sp. 2002721687 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia humptydooensis 430531 NZ_CP009547.1 Bac0015848 Geoglobus acetivorans strain SBH6 Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Geoglobus Geoglobus acetivorans 565033 NZ_CP009552.1 Bac0015849 Francisella frigiditurris strain CA97-1460 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella frigiditurris 1542390 NZ_CP009654.1 Bac0015850 Clostridium aceticum strain DSM 1496 Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Andreesenella Andreesenella acetica anaerobic 84022 NZ_CP009688.1 Bac0015851 Bacillus mycoides strain ATCC 6462 "Bacillus mycoides strain ATCC 6462 is a Gram-positive, rod-shaped bacterium that demonstrates facultative anaerobic characteristics, allowing it to thrive in various oxygen conditions. This strain is notably isolated from the deep-sea habitat of the Iheya Ridge hydrothermal vent field in the Okinawa Trough, an environment characterized by extreme temperatures and unique chemical compositions.↵↵As a member of the Bacillus genus, B. mycoides strain ATCC 6462 exhibits resilience in challenging environments, which may contribute to its survival in the nutrient-limited and high-pressure conditions often found in deep-sea ecosystems. The facultative anaerobic nature of this bacterium suggests that it can utilize both aerobic and anaerobic metabolic pathways, potentially allowing it to exploit a diverse range of organic materials available in its ecological niche.↵↵The unique habitat of the Iheya Ridge hydrothermal vent field provides an intriguing context for studying the adaptations of B. mycoides strain ATCC 6462. The ability of this bacterium to inhabit such a geochemically distinct environment may offer insights into the metabolic versatility and ecological roles of microbial life in deep-sea hydrothermal systems. Further exploration of its physiological and biochemical properties could enhance our understanding of microbial ecology in extreme environments and their potential biotechnological applications." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 NZ_CP009689.1 Bac0015852 Francisella tularensis subsp. holarctica strain FTT_1 "Francisella tularensis subsp. holarctica strain FTT_1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is notably classified as an aerobe, indicating its requirement for oxygen to grow and thrive. F. tularensis subsp. holarctica is often found in aquatic habitats, which may play a crucial role in its life cycle and interactions with other microbial communities in these environments.↵↵The Gram-negative nature of this organism suggests a complex cell envelope structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. This structural configuration may influence its interactions with the surrounding aquatic microbiome and its potential responses to environmental stressors.↵↵Further investigation into the ecological role of FTT_1 in aquatic systems could shed light on its interactions with other microorganisms and its contributions to nutrient cycling within these habitats. Understanding these dynamics may provide insights into the broader ecological impacts of this strain, particularly in freshwater ecosystems where it may influence microbial diversity and ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 263 NZ_CP009693.1 Bac0015853 Hafnia alvei FB1 "Hafnia alvei FB1 is a Gram-negative, facultative anaerobic bacterium characterized by its ability to thrive in both aerobic and anaerobic environments. This microbial species belongs to the Enterobacteriaceae family and is typically found in various environments, including soil and water, as well as in association with animal and plant matter. Its facultative anaerobic nature allows it to adapt to fluctuating oxygen levels, enabling survival and metabolic versatility in diverse ecological niches.↵↵Hafnia alvei has been studied for its potential roles in fermentation processes and its impact on food microbiology, contributing to the complex interactions within microbial communities. The bacterium may also play a role in biogeochemical cycles, participating in the degradation of organic matter under varying oxygen conditions. Understanding the ecological functions of Hafnia alvei FB1 can provide insights into its contributions to nutrient cycling and its interactions with other microorganisms in its environment. This adaptability not only underscores the ecological significance of Hafnia alvei but also highlights its potential applications in biotechnological processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia alvei Negative Facultative anaerobe 1453496 NZ_CP009706.1 Bac0015854 Pseudomonas parafulva strain CRS01-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas parafulva 157782 NZ_CP009747.1 Bac0015855 Bacillus subtilis strain ATCC 13952 "Bacillus subtilis strain ATCC 13952 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, allowing it to survive in adverse environmental conditions. This strain optimally grows at a temperature of 25.0 °C and exhibits facultative anaerobic respiration, indicating that it can utilize both aerobic and anaerobic metabolic pathways depending on the availability of oxygen. ↵↵B. subtilis ATCC 13952 is commonly associated with host organisms, suggesting its potential role in symbiotic or associative relationships within microbial communities. The sporulation capability of this strain not only contributes to its resilience but may also play a crucial role in its ecological interactions, possibly aiding in nutrient cycling within its habitat. ↵↵The combination of its rod shape, sporulation traits, and facultative metabolism positions B. subtilis ATCC 13952 as a versatile microbe that may contribute significantly to the microbial diversity and functionality within host-associated environments. Its ability to endure fluctuating conditions enhances its ecological fitness, potentially allowing it to thrive in various niches where it can engage with host partners and other microorganisms." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NZ_CP009748.1 Bac0015856 Curtobacterium sp. MR_MD2014 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MR_MD2014 1561023 NZ_CP009755.1 Bac0015857 Escherichia coli strain ECONIH1 "Escherichia coli strain ECONIH1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating a strong association with host environments. As a facultative anaerobe, ECONIH1 can grow in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within its habitat.↵↵The host-associated nature of this strain suggests that it may play a role in the microbiota of its host, contributing to various metabolic processes or influencing host health. This adaptability to oxygen availability and optimal growth temperature highlights its potential importance in the context of microbial interactions within the gastrointestinal tract or other host-associated niches.↵↵Further investigation into the specific ecological roles and interactions of E. coli strain ECONIH1 within its host environment could provide valuable insights into its contributions to host metabolism and overall microbial community dynamics. Understanding these interactions may also shed light on how this strain responds to changes in host physiology or environmental stressors." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP009859.1 Bac0015858 Pseudoalteromonas piratica strain OCN003 "Pseudoalteromonas piratica strain OCN003 is a Gram-negative, rod-shaped bacterium that exhibits heterotrophic metabolism and requires aerobic conditions for growth. As a member of the genus Pseudoalteromonas, this strain is characterized by its ability to utilize organic compounds as energy sources, indicative of its ecological role in nutrient cycling. ↵↵The rod shape of strain OCN003 is typical of many marine bacteria, suggesting adaptations to its aquatic environment. The aerobic nature of this strain implies a dependency on oxygen for metabolic processes, which is consistent with the aerobic conditions often found in marine habitats where Pseudoalteromonas species are commonly isolated. ↵↵Research on Pseudoalteromonas spp. has revealed their potential roles in the degradation of organic materials and their contributions to the dynamics of microbial communities in oceanic environments. This particular strain may thus play a significant part in the breakdown of organic matter, influencing nutrient availability in its ecosystem. ↵↵Given the traits associated with Pseudoalteromonas piratica strain OCN003, it may be particularly well-suited for interactions with other marine microorganisms, potentially forming symbiotic relationships or contributing to biogeochemical processes in coastal regions. The strain's heterotrophic lifestyle under aerobic conditions might also provide insights into microbial adaptations to varying oxygen levels in marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piratica Gram-negative rod motile aerobic heterotroph 1348114 NZ_CP009888.1 Bac0015859 Chryseobacterium gallinarum strain DSM 27622 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gallinarum 1324352 NZ_CP009928.1 Bac0015860 Clostridium scatologenes strain ATCC 25775 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium scatologenes anaerobic 1548 NZ_CP009933.1 Bac0015861 Cellulophaga baltica 18 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga baltica 1348584 NZ_CP009976.1 Bac0015862 Bacillus thuringiensis serovar kurstaki strain HD 1i "Bacillus thuringiensis serovar kurstaki strain HD 1i is a Gram-positive, rod-shaped bacterium that exhibits sporulation and functions as a facultative anaerobe. This strain is primarily host-associated, indicating a close relationship with specific host organisms, which may allow it to exploit particular ecological niches. ↵↵As a member of the Bacillus genus, B. thuringiensis serovar kurstaki is known for its ability to produce crystalline proteins that are toxic to certain insect larvae, making it a significant organism in biological pest control applications. The facultative anaerobic nature suggests that this strain can thrive in both oxygen-rich and oxygen-poor environments, providing it with a versatile metabolic capability that may enhance its survival and proliferation in diverse habitats.↵↵The sporulating characteristic of B. thuringiensis serovar kurstaki strain HD 1i also indicates a resilience to unfavorable environmental conditions, allowing it to persist in various ecosystems until conditions become favorable for vegetative growth. This adaptability, combined with its host-associated lifestyle, positions this strain as a potential candidate for biocontrol strategies in agriculture, particularly in environments where its target pests are prevalent. The unique interplay between its sporulation capability and facultative anaerobic metabolism may further facilitate its ecological success in fluctuating environments where resources and oxygen levels vary." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP009999.1 Bac0015863 Deinococcus radiopugnans strain DY59 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans 57497 NZ_CP010028.1 Bac0015864 Francisella tularensis subsp. novicida strain DPG 3A-IS "Francisella tularensis subsp. novicida strain DPG 3A-IS is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as an aerobic organism, requiring oxygen for its metabolic processes. Its habitat is primarily aquatic, suggesting that it may inhabit freshwater environments where it could play a role in the microbial ecosystem.↵↵The rod shape of F. tularensis subsp. novicida strain DPG 3A-IS may facilitate motility and nutrient absorption in its aquatic habitat, although specific motility traits are not detailed. The organism's aerobic nature indicates that it relies on oxygen for respiration, which may influence its distribution in environments with varying oxygen levels. ↵↵Understanding the traits of this strain is crucial for further research, particularly in the context of microbial interactions within aquatic ecosystems. The solitary arrangement of cells may suggest a strategy for resource competition, allowing individual cells to exploit localized nutrient sources effectively. Overall, the ecological role of Francisella tularensis subsp. novicida strain DPG 3A-IS within its aquatic habitat remains an area for further investigation, particularly regarding its interactions with other microorganisms and its responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 263 NZ_CP010103.1 Bac0015865 Bacillus thuringiensis serovar indiana strain HD521 "Bacillus thuringiensis serovar indiana strain HD521 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated environments. As a facultative anaerobe, this strain can adapt to varying oxygen levels, allowing it to occupy diverse ecological niches where oxygen availability fluctuates. ↵↵B. thuringiensis is widely recognized for its insecticidal properties, attributed to the production of crystal proteins (Cry proteins) during sporulation; however, specific details regarding the insecticidal activity of strain HD521 are not provided. The ability to sporulate contributes to its survival in adverse conditions, facilitating long-term persistence in host-associated habitats, which may include soil and plant surfaces where it interacts with various biological systems.↵↵The ecological role of B. thuringiensis serovar indiana strain HD521 may extend beyond its potential applications in biopesticide formulations. Given its host-associated habitat, it may play a significant role in the microbial ecology of its environment, potentially influencing the health and dynamics of microbial communities. This strain exemplifies the complex interactions between microorganisms and their hosts, which can have implications for both agricultural practices and ecosystem management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP010106.1 Bac0015866 Escherichia coli strain C5 "Escherichia coli strain C5 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cell arrangement primarily characterized by singles and pairs, which is typical for many members of the Enterobacteriaceae family. E. coli strain C5 thrives optimally at a temperature of 37.0°C, aligning with the physiological temperature of warm-blooded hosts, suggesting an adaptation to a life in association with these organisms.↵↵As a facultative anaerobe, E. coli strain C5 has the ability to grow in both aerobic and anaerobic conditions, allowing it to exploit various niches within host environments. This metabolic versatility is crucial for its survival in diverse habitats, including the gastrointestinal tract, where it may play a role in nutrient cycling and maintaining gut homeostasis.↵↵The specific ecological role of E. coli strain C5 within its host ecosystem warrants further investigation. Understanding its interactions with the host and other microbial communities may provide insights into its potential contributions to host health or disease, as well as its adaptability to changing environmental conditions within the host. Such knowledge could have implications for microbiome studies and the development of probiotics or therapeutic interventions targeting dysbiosis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP010123.1 Bac0015867 Campylobacter jejuni subsp. jejuni strain 00-0949 "Campylobacter jejuni subsp. jejuni strain 00-0949 is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This strain is classified as a microaerophile, indicating that it requires reduced levels of oxygen for optimal growth. It is a heterotrophic organism, which means it derives its energy from organic compounds. While the optimal temperature for growth is not specified, the designation as a microaerophile suggests that it thrives in specific environmental conditions that include low oxygen tension.↵↵The habitat of strain 00-0949 is described as “multiple,” implying a capacity to inhabit various environments, which is consistent with the ecological versatility often observed in Campylobacter species. This adaptability may contribute to its survival in diverse ecological niches, including those associated with animal hosts and the broader environment.↵↵Given its morphological and physiological characteristics, strain 00-0949 may play a role in microbial communities where organic matter decomposition and nutrient cycling occur, particularly in environments that exhibit microaerobic conditions. Further studies could elucidate its specific ecological interactions and contributions to its habitats, which remain an intriguing area of research within the field of microbiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 NZ_CP010301.1 Bac0015868 Geoalkalibacter subterraneus strain Red1 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter subterraneus 483547 NZ_CP010312.1 Bac0015869 Pseudomonas plecoglossicida strain NyZ12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas plecoglossicida soil environments 70775 NZ_CP010359.1 Bac0015870 Streptomyces vietnamensis strain GIMV4.0001 "Streptomyces vietnamensis strain GIMV4.0001 is a Gram-positive, aerobic bacterium characterized by its rod-shaped morphology and ability to form spores. This strain belongs to the genus Streptomyces, which is well-known for its complex life cycle and production of a diverse array of secondary metabolites, including antibiotics. The spore-forming capability of S. vietnamensis GIMV4.0001 is significant, as it enables the organism to survive in varied environmental conditions and contributes to its ecological resilience.↵↵As an aerobic microbe, S. vietnamensis strain GIMV4.0001 requires oxygen for its metabolic processes, which influences its habitat preferences in soil and decaying organic matter, where oxygen is readily available. The Gram-positive nature of this strain suggests a thick peptidoglycan layer in its cell wall, which is a characteristic feature of many soil-dwelling actinobacteria and may play a role in its survival against environmental stressors.↵↵Given its traits, S. vietnamensis strain GIMV4.0001 may be particularly adept at competing for nutrients and establishing itself within microbial communities in aerobic environments. This strain's sporulation ability not only aids in its persistence but may also enhance its role in nutrient cycling and soil health, emphasizing the ecological significance of Streptomyces species in terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces vietnamensis Gram-positive rod aerobic spore-forming 362257 NZ_CP010408.1 Bac0015871 Bifidobacterium breve strain BR3 "Bifidobacterium breve strain BR3 is a Gram-positive, anaerobic bacterium predominantly found in the gastrointestinal tracts of infants, particularly within the microbiota of healthy newborns. This strain is notably present in human breast milk and the intestines of infants, indicating its vital role in early gut colonization and development. Bifidobacterium breve is recognized for its contributions to gut health, including potential benefits for digestion and immune function during infancy.↵↵The anaerobic nature of B. breve strain BR3 suggests that it thrives in low-oxygen environments, which is characteristic of the gut microbiota. This adaptation allows it to flourish in the intestines, where it may interact synergistically with other microbial species, contributing to a balanced microbiome that is essential for the proper metabolism and health of the host. Additionally, the presence of B. breve in human breast milk underscores its significance in maternal-infant health dynamics, as maternal nutrition and microbiota can influence the colonization patterns of beneficial microbes in newborns.↵↵Overall, Bifidobacterium breve strain BR3 exemplifies a key microbial inhabitant of the infant gut, with implications for early development and long-term health. Its role in shaping the gut microbiome during infancy highlights the importance of early microbial exposure in establishing a resilient and diverse microbiota, which may have lasting effects on health throughout life." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 NZ_CP010413.1 Bac0015872 Pragia fontium strain 24613 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Budviciaceae Pragia Pragia fontium 82985 NZ_CP010423.1 Bac0015873 Allofrancisella guangzhouensis strain 08HL01032 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Allofrancisella Allofrancisella guangzhouensis 594679 NZ_CP010427.1 Bac0015874 Cupriavidus gilardii CR3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus gilardii 1267562 NZ_CP010516.1 Bac0015875 Sediminicola sp. YIK13 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Sediminicola Sediminicola sp. YIK13 1453352 NZ_CP010535.1 Bac0015876 Cupriavidus basilensis strain 4G11 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus basilensis 68895 NZ_CP010536.1 Bac0015877 Rugosibacter aromaticivorans strain Ca6 "Rugosibacter aromaticivorans strain Ca6 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, utilizing organic compounds as a heterotrophic energy source. This strain exhibits optimal growth at a temperature of 32.0°C, suggesting a preference for moderately warm environments typical of certain natural habitats.↵↵The Gram-negative nature of Rugosibacter aromaticivorans strain Ca6 indicates a cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer specific advantages in nutrient uptake and environmental resilience. Its rod shape may facilitate motility and colonization in various substrates, potentially enhancing its ability to exploit available organic matter.↵↵Given its metabolic capabilities and growth preferences, Rugosibacter aromaticivorans strain Ca6 could play a significant role in the degradation of aromatic compounds in its habitat. This ability to metabolize complex organic molecules may contribute to biogeochemical cycling processes, particularly in environments rich in organic pollutants or decaying plant material. Further investigation into its metabolic pathways could provide insights into its ecological roles and potential applications in bioremediation efforts." Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Rugosibacter Rugosibacter aromaticivorans Gram-negative rod non-motile aerobic 32 heterotroph mesophilic 1565605 NZ_CP010554.1 Bac0015878 Phaeobacter piscinae strain P36 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter piscinae 1580596 NZ_CP010643.1 Bac0015879 Phaeobacter inhibens strain P88 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter inhibens 221822 NZ_CP010727.1 Bac0015880 Phaeobacter piscinae strain P13 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter piscinae 1580596 NZ_CP010771.1 Bac0015881 Carnobacterium sp. CP1 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium antarcticum 2126436 NZ_CP010796.1 Bac0015882 Rhodococcus sp. B7740 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. B7740 1564114 NZ_CP010797.1 Bac0015883 Desulfuromonas soudanensis strain WTL Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas soudanensis underground Soudan iron mine 1603606 NZ_CP010802.1 Bac0015884 Martelella endophytica strain YC6887 "Martelella endophytica strain YC6887 is a Gram-negative, rod-shaped bacterium characterized as a facultative aerobe/anaerobe with an optimal growth temperature of 29.0 °C. This strain exhibits non-spore-forming capabilities, which may influence its survival strategies in various environments. ↵↵The Gram-negative nature of M. endophytica suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which could play a role in its interactions with the surrounding environment, including potential resistance to certain antibiotics and environmental stresses. The rod-shaped morphology is indicative of a common bacterial form, which may facilitate motility and colonization in diverse habitats.↵↵The facultative anaerobic feature of strain YC6887 implies versatility in its metabolic processes, allowing it to thrive in both oxygen-rich and oxygen-limited conditions. This adaptability may enhance its ecological niche, particularly in environments where oxygen levels fluctuate.↵↵Given its endophytic classification, M. endophytica may establish symbiotic relationships with host plants, potentially aiding in nutrient acquisition or providing protective benefits. Such interactions could be critical in understanding its role within plant microbiomes and its potential contributions to plant health and resilience in various ecological contexts. Further research into this strain could unveil novel insights into its functional roles and applications in agricultural microbiology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Martelella Martelella endophytica Gram-negative rod non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 1486262 NZ_CP010803.1 Bac0015885 Myroides profundi strain D25 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides profundi 480520 NZ_CP010817.1 Bac0015886 Corynebacterium ulcerans strain 131001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ulcerans 65058 NZ_CP010818.1 Bac0015887 Streptomyces sp. Tue 6075 strain Tue6075 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Tue 6075 1661694 NZ_CP010833.1 Bac0015888 Sphingomonas hengshuiensis strain WHSC-8 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas hengshuiensis 1609977 NZ_CP010837.1 Bac0015889 Marinovum algicola DG 898 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Marinovum Marinovum algicola 988812 NZ_CP010855.1 Bac0015890 Streptococcus agalactiae strain SS1 "Streptococcus agalactiae strain SS1 is a Gram-positive bacterium characterized by its cocci shape, which typically arranges in chains or pairs. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, S. agalactiae strain SS1 is capable of growth in the presence or absence of oxygen, allowing it to occupy various niches within host environments where oxygen availability may fluctuate.↵↵The presence of S. agalactiae in host-associated habitats suggests a potential role in the host's microbiota, though the specific interactions and implications for host health remain to be elucidated. The ability to form chains and pairs could influence its colonization dynamics and interactions with other microbial species. This structural arrangement may also play a role in the bacterium's resistance to environmental stressors within the host. Further studies on S. agalactiae strain SS1 could provide insights into its ecological roles and contributions to the overall microbial community in host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1311 NZ_CP010867.1 Bac0015891 Nitrosopumilus piranensis strain D3C Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus piranensis 1582439 NZ_CP010868.1 Bac0015892 Actibacterium sp. EMB200-NS6 strain EMBL200_NS6 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Actibacterium Actibacterium sp. EMB200-NS6 1609966 NZ_CP010869.1 Bac0015893 Escherichia coli strain MNCRE44 "Escherichia coli strain MNCRE44 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the body temperature of warm-blooded hosts, suggesting an adaptation to a host-associated habitat. As a facultative anaerobe, E. coli MNCRE44 is capable of growth in both aerobic and anaerobic environments, allowing it to exploit a variety of niches within the host's microbiome.↵↵The ability of E. coli to inhabit diverse environments, such as the gastrointestinal tract, highlights its versatility and potential for symbiotic relationships with host organisms. This adaptability may facilitate nutrient acquisition and contribute to the overall microbial balance within the host. The specific ecological role of E. coli strain MNCRE44 remains to be elucidated, but its traits suggest it may play a significant part in metabolic processes that benefit the host, such as fermentation of undigested carbohydrates and synthesis of essential vitamins. Overall, E. coli strain MNCRE44 exemplifies the complex interplay between microbial life and host physiology, underscoring the importance of studying individual strains to understand their unique contributions to microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP010878.1 Bac0015894 Pseudomonas sp. MRSN 12121 strain MRSN12121 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MRSN 12121 1611770 NZ_CP010892.1 Bac0015895 Pandoraea vervacti strain NS15 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea vervacti 656178 NZ_CP010898.2 Bac0015896 Kiritimatiella glycovorans strain L21-Fru-AB Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Kiritimatiellaceae Kiritimatiella Kiritimatiella glycovorans 1307763 NZ_CP010904.1 Bac0015897 Ramlibacter tataouinensis strain 5-10 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Ramlibacter Ramlibacter tataouinensis 94132 NZ_CP010951.1 Bac0015898 Rickettsia conorii subsp. raoultii strain Khabarovsk Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia conorii 781 NZ_CP010969.1 Bac0015899 Methylophilales bacterium MBRS-H7 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilales bacterium MBRS-H7 1623450 NZ_CP011002.1 Bac0015900 Psychromicrobium lacuslunae strain IHBB 11108 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Psychromicrobium Psychromicrobium lacuslunae 1618207 NZ_CP011005.1 Bac0015901 Limosilactobacillus mucosae LM1 "Limosilactobacillus mucosae LM1 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits a characteristic arrangement in chains. This organism is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which may be sourced from its varied habitats. Limosilactobacillus mucosae LM1 is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which likely contributes to its adaptability in diverse ecological niches. ↵↵The optimal growth temperature for Limosilactobacillus mucosae LM1 is 37.0°C, suggesting that it may be well-suited for environments that approximate the body temperature of warm-blooded hosts. This temperature preference may also indicate a potential association with gastrointestinal ecosystems, although specific ecological roles remain to be fully elucidated.↵↵Given its ability to grow in multiple habitats and its classification as a facultative anaerobe, Limosilactobacillus mucosae LM1 could play a significant role in microbial communities, particularly in fermentation processes or in the modulation of gut microbiota. This bacterium's flexible metabolic capabilities may enable it to contribute to the degradation of complex organic materials, thereby influencing nutrient cycling and ecosystem dynamics. Further research is warranted to explore the specific interactions and functions of Limosilactobacillus mucosae LM1 within its ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus mucosae Positive Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 1130798 NZ_CP011013.1 Bac0015902 Pseudomonas chlororaphis strain UFB2 "Pseudomonas chlororaphis strain UFB2 is a Gram-negative, rod-shaped bacterium primarily found in the nodules of Chamaecytisus albus, as well as in the rhizosphere and root nodules of various plants. This strain exhibits traits characteristic of the Pseudomonas genus, which are notable for their metabolic versatility and adaptability to diverse environments. ↵↵The presence of Pseudomonas chlororaphis strain UFB2 in the root nodules of Chamaecytisus albus suggests a potential role in symbiotic relationships within its habitat. The specific association with root nodules indicates that this microbe may contribute to plant health, possibly through mechanisms such as nutrient acquisition or facilitation of plant growth. ↵↵Additionally, as a member of the rhizosphere microbiome, Pseudomonas chlororaphis strain UFB2 may play a significant role in soil health and nutrient cycling, influencing the availability of essential elements to plants and potentially enhancing soil structure. Understanding the interactions between this strain and its plant hosts could provide insights into the ecological dynamics of root-associated microbial communities and their impact on plant development." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis negative Rod nodules of Chamaecytisus albus; rhizosphere; root nodules 587753 NZ_CP011020.1 Bac0015903 Pseudoalteromonas espejiana DSM 9414 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas espejiana 1314869 NZ_CP011028.1 Bac0015904 Pseudoalteromonas tetraodonis strain GFC Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas tetraodonis 43659 NZ_CP011042.1 Bac0015905 Clavibacter michiganensis subsp. insidiosus strain R1-1 "Clavibacter michiganensis subsp. insidiosus strain R1-1 is a Gram-positive, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. C. michiganensis subsp. insidiosus is known to inhabit multiple environments, suggesting a versatile ecological adaptability that may contribute to its survival in various ecological niches. ↵↵The rod shape and specific cellular arrangements may play a role in its interactions within diverse habitats, potentially influencing its colonization strategies and competitive abilities. Given the strain's aerobic nature, it may participate in various biological processes, such as nutrient cycling, which could enhance soil health and plant growth in its native environments. This adaptability underscores the ecological significance of C. michiganensis subsp. insidiosus strain R1-1, highlighting its potential role in maintaining microbial diversity and ecosystem function." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 28447 NZ_CP011043.1 Bac0015906 Cronobacter sakazakii strain ATCC 29544 "Cronobacter sakazakii strain ATCC 29544 is a nonsporulating, Gram-negative bacterium characterized by its rod shape and tendency to exist in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to host-associated environments, such as the gastrointestinal tracts of animals or humans. As an anaerobe, C. sakazakii strain ATCC 29544 primarily grows in the absence of oxygen, which may influence its ecological niche and interactions within host organisms.↵↵The unique combination of traits exhibited by this strain positions it within environments where anaerobic conditions prevail, highlighting its potential role in the microbiomes of various hosts. Understanding its specific habitat and metabolic capabilities could provide insights into its ecological functions and interactions with both host and other microbial communities. Further research into its physiological adaptations may illuminate its ecological significance and potential roles in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii Negative Rod No 1 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles Nonsporulating 28141 NZ_CP011047.1 Bac0015907 Saccharolobus solfataricus strain SARC-C "Saccharolobus solfataricus strain SARC-C is a Gram-negative coccoid archaeon characterized by its optimal growth temperature of 85.0°C and its lithotrophic metabolism, utilizing inorganic compounds as energy sources. This strain exists as single cells and is obligately aerobic, indicating its dependence on oxygen for survival and energy production. ↵↵The specialized habitat of S. solfataricus strain SARC-C suggests an adaptation to extreme environmental conditions, likely similar to those found in geothermal settings such as hot springs or volcanic areas. The organism's ability to thrive at high temperatures not only highlights its extremophilic nature but also implies potential biochemical pathways that allow it to stabilize cellular processes under thermal stress. ↵↵Understanding the traits of S. solfataricus strain SARC-C can provide insights into the evolutionary adaptations of life in extreme environments, particularly how lithotrophic organisms contribute to biogeochemical cycles in their native habitats. This knowledge may also inform biotechnological applications, as extremophiles are often harnessed for their unique metabolic capabilities in industrial processes." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus Negative Cocci No 1 1 Aerobe 85 Lithotroph Hyperthermophilic Specialized Free living Singles 2287 NZ_CP011056.2 Bac0015908 Elizabethkingia miricola strain BM10 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia miricola 172045 NZ_CP011059.1 Bac0015909 Nitrosopumilus adriaticus strain NF5 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus adriaticus 1580092 NZ_CP011070.1 Bac0015910 Flagellimonas lutaonensis strain CC-HSB-11 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas lutaonensis 516051 NZ_CP011071.1 Bac0015911 Klebsiella michiganensis strain RC10 "Klebsiella michiganensis strain RC10 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe with an optimal growth temperature of 37.0°C. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, making it adaptable to various environments where organic matter is available. ↵↵K. michiganensis strain RC10 has been identified in multiple habitats, which suggests its ecological versatility and ability to thrive in diverse conditions, including both aerobic and anaerobic environments. The facultative anaerobic nature of this strain allows it to utilize oxygen when available but also to survive in its absence, contributing to its resilience in fluctuating environmental conditions.↵↵The adaptability of K. michiganensis strain RC10 to various habitats and its metabolic flexibility may play a significant role in its interactions within microbial communities. This versatility may enable it to participate actively in nutrient cycling and influence the dynamics of microbial ecosystems in which it is present, although specific ecological interactions remain to be elucidated. The presence of this strain in diverse environments underscores the importance of studying its ecological roles and potential applications in biotechnology and environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 NZ_CP011077.1 Bac0015912 Corynebacterium ulcerans strain 131002 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ulcerans 65058 NZ_CP011095.1 Bac0015913 Candidatus Nitrosotenuis cloacae strain SAT1 Thermoproteati Nitrososphaerota Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae 1603555 NZ_CP011097.1 Bac0015914 Pseudomonas chlororaphis strain PCL1606 "Pseudomonas chlororaphis strain PCL1606 is a Gram-negative, rod-shaped bacterium that inhabits the nodules of Chamaecytisus albus as well as the rhizosphere and root nodules of various plants. This strain is part of a diverse genus known for its metabolic versatility and ecological significance. The presence of P. chlororaphis in the root nodules of legumes like Chamaecytisus albus suggests a potential role in symbiotic relationships, possibly contributing to nitrogen fixation or promoting plant growth through various mechanisms.↵↵The habitat preferences of strain PCL1606 indicate its adaptation to the plant-associated environments, where it may interact with plant roots and other soil microorganisms. Its localization in the rhizosphere suggests that it could be involved in nutrient cycling and enhancing soil health, which are critical processes in sustainable agriculture.↵↵Furthermore, the ecological role of Pseudomonas chlororaphis strain PCL1606 may extend beyond its direct interactions with plants, as members of this genus are known to produce various secondary metabolites that can influence microbial communities and soil dynamics. Understanding the traits and behaviors of this strain can provide insights into its potential applications in biocontrol and bioremediation, highlighting the importance of studying plant-associated bacteria in the context of agricultural ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis negative Rod nodules of Chamaecytisus albus; rhizosphere; root nodules 587753 NZ_CP011110.1 Bac0015915 Dehalococcoides mccartyi strain 11a5 "Dehalococcoides mccartyi strain 11a5 is a Gram-positive, cocci-shaped bacterium that exists as single cells and is classified as an anaerobic chemolithotroph. This strain thrives optimally at a temperature of 35.0 °C and is capable of utilizing various energy sources in its metabolic processes. D. mccartyi strain 11a5 has been identified in diverse habitats, which suggests its adaptability to different environmental conditions.↵↵As an anaerobic organism, D. mccartyi strain 11a5 plays a significant role in biogeochemical cycles, particularly in the reduction of halogenated compounds. This metabolic capability positions it as a key player in bioremediation efforts, where it can facilitate the detoxification of contaminated environments. The ability of this strain to thrive in multiple habitats underscores its ecological versatility and potential applications in environmental microbiology.↵↵Given its unique metabolic traits, D. mccartyi strain 11a5 may contribute significantly to the dehalogenation processes in anaerobic environments, highlighting its importance in both microbial ecology and bioremediation strategies. Its presence in varying habitats indicates a potential role in maintaining ecosystem health and stability, particularly in areas impacted by halogenated pollutants." Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi Positive Cocci No 1 1 Anaerobe 35 Chemolithotroph Mesophilic Multiple Free living Singles 61435 NZ_CP011128.1 Bac0015916 Lysobacter antibioticus strain 76 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter antibioticus 84531 NZ_CP011129.1 Bac0015917 Lysobacter capsici strain 55 "Lysobacter capsici strain 55 is a rod-shaped bacterium that thrives in chromium-contaminated environments, including both water sources and plant-associated habitats. This strain has been isolated from chromium-contaminated water and specifically from the water of plants, such as ready-to-eat lettuce, suggesting its potential association with agricultural systems impacted by chromium pollution. The presence of Lysobacter capsici strain 55 in such habitats indicates its possible role in the microbial community dynamics of contaminated ecosystems.↵↵The adaptability of this strain to chromium-laden environments may provide insights into bioremediation strategies, as it could contribute to the degradation or transformation of chromium compounds in affected areas. Understanding the mechanisms by which Lysobacter capsici strain 55 interacts with its chromium-rich habitat may also help elucidate its ecological role in mitigating the toxic effects of this heavy metal on plants and other microorganisms. Future research on this strain could further uncover its potential applications in bioremediation and the sustainable management of contaminated water sources in agricultural practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter capsici Rod chromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water 435897 NZ_CP011130.1 Bac0015918 Lysobacter gummosus strain 3.2.11 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter gummosus aerobic 262324 NZ_CP011131.1 Bac0015919 Citrobacter amalonaticus Y19 "Citrobacter amalonaticus Y19 is a Gram-negative bacterium characterized as a facultative anaerobe. This organism can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels in its habitat. As a member of the Enterobacteriaceae family, C. amalonaticus exhibits metabolic versatility, which is a hallmark of many bacteria within this group. The ability to utilize diverse substrates enhances its survival in complex ecosystems.↵↵The Gram-negative nature of C. amalonaticus Y19 indicates a distinctive cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural composition is significant, as it influences not only the bacterium's physiological properties but also its interactions with other microorganisms and its resilience against certain environmental stresses.↵↵Facultative anaerobiosis suggests that C. amalonaticus Y19 can switch between fermentation and respiration depending on oxygen availability, a trait that may facilitate its survival in varied ecological niches, such as soil, water, and possibly the gastrointestinal tracts of animals. The metabolic flexibility of C. amalonaticus Y19 may contribute to its role in nutrient cycling within these environments, highlighting its potential importance in microbial dynamics and ecosystem functioning. Further studies could elucidate the specific contributions of this bacterium to its ecological niche and its interactions with other microbial community members." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter amalonaticus Negative Facultative anaerobe 1261127 NZ_CP011132.1 Bac0015920 Bacillus cereus strain CMCC P0011 "Bacillus cereus strain CMCC P0011 is a gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives in aerobic conditions and has an optimal growth temperature of 25.0°C, indicating a preference for moderate environmental temperatures. The versatility of its habitat suggests that B. cereus strain CMCC P0011 can adapt to various ecological niches, which may include soil, plants, and decaying organic matter. ↵↵As a member of the Bacillus genus, this strain is likely to exhibit characteristics common to other Bacillus species, including the potential for endospore formation, although specific details on sporulation were not provided. The ability to grow in diverse habitats may be attributed to its metabolic flexibility, allowing it to utilize a range of nutrients and survive in varying environmental conditions. ↵↵The aerobic nature of strain CMCC P0011 emphasizes its reliance on oxygen for growth, which may influence its distribution in environments with sufficient oxygen availability. This trait is particularly relevant in ecosystems where oxygen levels fluctuate, potentially impacting its ecological interactions and roles. Overall, the capacity of Bacillus cereus strain CMCC P0011 to thrive in multiple habitats under aerobic conditions underscores its adaptability and ecological significance within microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP011154.1 Bac0015921 Bacillus cereus strain HN001 "Bacillus cereus strain HN001 is a Gram-positive, rod-shaped bacterium that typically exists in chains and is classified as an aerobic organism. This strain has an optimal growth temperature of 25.0°C, suggesting a preference for moderate environmental conditions. Bacillus cereus is known to inhabit a variety of ecological niches, indicating its versatility and adaptability in different habitats, which may include soil, vegetation, and potentially the gastrointestinal tracts of animals.↵↵The chaining morphology observed in strain HN001 is characteristic of many Bacillus species and may contribute to its ecological interactions and survival strategies in diverse environments. Furthermore, its aerobic nature implies a reliance on oxygen for metabolism, which could influence its distribution and functional roles within its habitats. ↵↵Understanding the biological traits of Bacillus cereus strain HN001 provides insights into its ecological adaptability and potential interactions within microbial communities. The ability to thrive in various habitats while exhibiting specific growth conditions highlights the ecological significance of this strain and its potential roles in biogeochemical cycles." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP011155.1 Bac0015922 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 Candidatus Saccharimonadota Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 NZ_CP011211.1 Bac0015923 Pandoraea oxalativorans strain DSM 23570 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea oxalativorans 573737 NZ_CP011253.3 Bac0015924 Xanthomonas arboricola strain 17 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 56448 NZ_CP011256.1 Bac0015925 Ralstonia mannitolilytica strain SN83A39 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia mannitolilytica hot spring 105219 NZ_CP011257.1 Bac0015926 Verrucomicrobia bacterium IMCC26134 Pseudomonadati Verrucomicrobiota Verrucomicrobia bacterium IMCC26134 1637999 NZ_CP011265.1 Bac0015927 Methanobrevibacter millerae strain SM9 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae 230361 NZ_CP011266.1 Bac0015928 Mycolicibacterium fortuitum strain CT6 "Mycolicibacterium fortuitum strain CT6 is a nonsporulating, rod-shaped bacterium that exhibits facultative anaerobic metabolism, thriving optimally at 30.0°C. This strain utilizes a chemoheterotrophic mode of nutrition, indicating its reliance on organic compounds as both carbon and energy sources. ↵↵M. fortuitum strain CT6 is primarily found in soil habitats, which suggests that it may play a role in the degradation of organic matter and nutrient cycling within its ecosystem. The ability to survive in varying oxygen conditions allows this bacterium to adapt to diverse environmental niches, potentially contributing to soil health and stability. Given its metabolic versatility and ecological role, M. fortuitum strain CT6 may also interact with other soil microorganisms, influencing microbial community dynamics and biogeochemical processes in its environment. ↵↵Overall, the traits of Mycolicibacterium fortuitum strain CT6 underscore its potential importance in soil ecosystems, particularly in the context of organic matter decomposition and nutrient recycling." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium fortuitum Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Soil Nonsporulating 1766 NZ_CP011269.1 Bac0015929 Planctomyces sp. SH-PL14 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL14 1632864 NZ_CP011270.1 Bac0015930 Rhodococcus erythropolis strain BG43 "Rhodococcus erythropolis strain BG43 is a Gram-positive, filamentous rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 20.0°C. This strain is part of the diverse Rhodococcus genus, which is known for its versatility in adapting to various habitats.↵↵R. erythropolis BG43 has been observed in multiple environments, suggesting its ecological resilience and ability to exploit different ecological niches. The filamentous arrangement of its cells may confer advantages in forming biofilms or interacting with other microorganisms in its habitat, potentially enhancing nutrient acquisition and metabolic interactions.↵↵Given its aerobic nature, R. erythropolis BG43 likely plays a role in the degradation of organic compounds in oxygen-rich environments, contributing to biogeochemical cycles. The strain's adaptability to various habitats underscores its potential utility in bioremediation applications, where it could be employed to mitigate environmental pollutants. Such traits may position R. erythropolis BG43 as a significant player in microbial communities, particularly in soil and aquatic ecosystems, where its metabolic capabilities can influence the degradation of complex organic substances." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 1833 NZ_CP011296.1 Bac0015931 Microcystis aeruginosa NIES-2549 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1641812 NZ_CP011304.1 Bac0015932 Stenotrophomonas maltophilia strain ISMMS2 "Stenotrophomonas maltophilia strain ISMMS2 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements. This strain, like other members of its species, is versatile in its habitat, found in multiple environments, which may include both natural and anthropogenic settings. The ability to thrive in diverse ecological niches suggests a degree of metabolic adaptability and resilience, enabling S. maltophilia to utilize various substrates and survive under fluctuating conditions.↵↵As an aerobic organism, S. maltophilia strain ISMMS2 requires oxygen for growth, reflecting a reliance on aerobic respiration processes. This trait may contribute to its competitive advantage in environments where oxygen is available, potentially outcompeting other microbes that are either anaerobic or microaerophilic.↵↵The ecological versatility and aerobic nature of S. maltophilia strain ISMMS2 might imply its role in nutrient cycling within its habitats, as it could be involved in the degradation of organic compounds and interaction with other microbial communities. Understanding these traits can provide insights into the ecological dynamics of environments where this strain is present, highlighting its potential contributions to microbial diversity and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 NZ_CP011305.1 Bac0015933 Corynebacterium kutscheri strain DSM 20755 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium kutscheri aerobic / microaerophile 29 mesophilic 35755 NZ_CP011312.1 Bac0015934 Microcystis panniformis FACHB-1757 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis panniformis 1638788 NZ_CP011339.1 Bac0015935 Salinicoccus halodurans strain H3B36 "Salinicoccus halodurans strain H3B36 is a Gram-positive, spherical bacterium that thrives optimally at a temperature of 29.0°C. This microbe is characterized by its non-spore-forming nature, which distinguishes it from many other bacterial species that utilize sporulation as a survival mechanism. The spherical morphology of S. halodurans suggests a potential adaptation to its environment, possibly allowing for efficient nutrient uptake and interaction in its ecological niche. ↵↵Given its Gram-positive classification, S. halodurans likely possesses a thick peptidoglycan layer in its cell wall, which may provide structural integrity and protection against environmental stresses. The optimal growth temperature of 29.0°C indicates that this strain may be adapted to moderate thermal environments, which is often characteristic of saline habitats.↵↵Understanding the traits of Salinicoccus halodurans strain H3B36 can provide insights into the metabolic capabilities and ecological roles of similar halophilic microorganisms. The non-spore-forming characteristic may imply a reliance on active growth and reproduction in environments where conditions are favorable, suggesting a potential vulnerability to extreme fluctuations in salinity or temperature. This could lead to a greater understanding of the resilience mechanisms employed by halophilic bacteria in managing their habitats, particularly in fluctuating saline environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Salinicoccus Salinicoccus halodurans Gram-positive sphere non-motile 29 mesophilic non-spore-forming 407035 NZ_CP011366.1 Bac0015936 Thioalkalivibrio versutus strain D301 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio versutus 106634 NZ_CP011367.1 Bac0015937 Mycoplasmopsis canis strain LV Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis canis 29555 NZ_CP011368.1 Bac0015938 Caldimonas brevitalea strain DSM 7029 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Caldimonas Caldimonas brevitalea 413882 NZ_CP011371.1 Bac0015939 Moraxella bovoculi strain 58086 "Moraxella bovoculi strain 58086 is a Gram-negative, coccoid bacterium characterized by its spherical shape. This strain belongs to the Moraxellaceae family, which is notable for its diverse roles in various environments. As a Gram-negative organism, Moraxella bovoculi possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of this classification, which may influence its interactions with other microbial species and its resilience in specific environments.↵↵The coccoid morphology of strain 58086 suggests a potential for diverse metabolic pathways, as many cocci are known to thrive in various ecological niches. Although specific metabolic traits of this strain have not been provided, the general characteristics of Moraxella species indicate that they can be associated with a range of substrates, potentially aiding in nutrient cycling within their habitats.↵↵Furthermore, the presence of Moraxella bovoculi in particular environments may reflect its role in microbial community dynamics, particularly in relation to its interactions with other bacteria. This strain may contribute to the overall microbial diversity and function in environments where it is found, such as the bovine respiratory tract, though the specifics of its ecological interactions remain to be fully elucidated. Overall, the unique features of Moraxella bovoculi strain 58086 underscore its potential importance in both microbial ecology and the broader context of its interactions within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella bovoculi negative Coccus 386891 NZ_CP011381.2 Bac0015940 Paenibacillus swuensis strain DY6 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus swuensis 1178515 NZ_CP011388.1 Bac0015941 Flavisolibacter tropicus strain LCS9 "Flavisolibacter tropicus strain LCS9 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This strain exemplifies typical characteristics of the genus Flavisolibacter, which is known for its adaptability to various environmental conditions. As a Gram-negative organism, LCS9 possesses a distinctive cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may influence its interactions with other microorganisms and its resilience to certain environmental stresses.↵↵The rod shape of Flavisolibacter tropicus strain LCS9 contributes to its motility and surface attachment capabilities, potentially facilitating its survival in diverse habitats. The specific temperature preference suggests that this bacterium may play a role in the microbiomes of temperate environments, where such conditions are prevalent. ↵↵While the ecological roles of Flavisolibacter tropicus strain LCS9 remain to be fully elucidated, its optimal growth at 25.0°C may indicate a potential involvement in nutrient cycling processes in soils or aquatic systems, where similar temperatures are common. This insight highlights the importance of studying such microorganisms, as they could contribute to ecosystem functioning and stability in temperate climates." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavisolibacter Flavisolibacter tropicus Gram-negative rod non-motile 25 mesophilic 1492898 NZ_CP011390.1 Bac0015942 Dehalogenimonas sp. WBC-2 Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas sp. WBC-2 943347 NZ_CP011392.1 Bac0015943 Ligilactobacillus salivarius str. Ren "Ligilactobacillus salivarius strain Ren is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic respiration. This microbe is primarily host-associated, suggesting a close relationship with specific hosts, likely contributing to the microbial community within the host's environment.↵↵As a member of the Lactobacillaceae family, Ligilactobacillus salivarius is known for its role in fermentation and the production of lactic acid, which can have implications for gut health and the maintenance of a balanced microbiota. The facultative anaerobic nature of strain Ren indicates its ability to thrive in both oxygen-rich and oxygen-poor environments, enhancing its adaptability to varying ecological niches within its host.↵↵While the specific ecological roles of Ligilactobacillus salivarius str. Ren require further investigation, its close association with hosts suggests potential benefits in modulating host immune responses and competitive exclusion of pathogenic microorganisms. This adaptability and potential functional versatility may play a significant role in the overall health of the host, highlighting the importance of understanding host-associated microbes in the context of microbiome research." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1194971 NZ_CP011404.1 Bac0015944 Herbaspirillum hiltneri N3 "Herbaspirillum hiltneri N3 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This species thrives optimally at a temperature of approximately 29.0 °C, indicating a potential preference for moderate environmental conditions. As a member of the Herbaspirillum genus, it may be involved in beneficial interactions with plants, possibly contributing to plant growth or nutrient cycling, although specific ecological roles require further investigation. ↵↵The Gram-negative cell wall structure of H. hiltneri N3, characterized by a thin peptidoglycan layer and an outer membrane, may confer certain advantages in its environmental niche, such as enhanced resistance to antimicrobial agents. The rod shape of the bacterium could also facilitate motility in aquatic or moist environments, allowing it to access nutrients effectively.↵↵Given its aerobic nature, H. hiltneri N3 likely relies on oxygen for its metabolic processes, which may influence its distribution in soil or rhizosphere environments where oxygen availability varies. Understanding the specific interactions of this microbe within its ecological context could provide insights into its role in promoting plant health or its involvement in soil microbiomes. Further research would be necessary to elucidate the specific mechanisms by which H. hiltneri N3 interacts with its environment and potential applications in agriculture or biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum hiltneri Gram-negative rod aerobic 29 mesophilic non-spore-forming 1262470 NZ_CP011409.1 Bac0015945 Sedimenticola thiotaurini strain SIP-G1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Sedimenticolaceae Sedimenticola Sedimenticola thiotaurini 1543721 NZ_CP011412.1 Bac0015946 Pantoea vagans strain ND02 "Pantoea vagans strain ND02 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic respiration. This strain is associated with various host environments, suggesting a potential role in interactions with host organisms. The facultative nature of its oxygen requirement indicates that P. vagans strain ND02 can thrive in both aerobic and anaerobic conditions, which may contribute to its adaptability in diverse ecological niches.↵↵The rod shape of this microbe is characteristic of many members within the Enterobacteriaceae family, and its nonsporulating trait further emphasizes its reliance on favorable environmental conditions for survival and proliferation. While specific pathogenicity and ecological roles were not detailed, the host-associated habitat hints at possible symbiotic or associative relationships with its hosts, which could have implications for plant health or microbial community dynamics.↵↵Understanding the traits of Pantoea vagans strain ND02 may provide insights into its potential applications in agriculture or biotechnology, particularly in the context of plant-associated microbes. The ability to thrive in varying oxygen levels could enable this strain to play a versatile role in different ecological contexts, illustrating the complexity of microbial interactions within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea vagans Negative Rod No 1 2 Facultative Mesophilic HostAssociated Free living Nonsporulating 470934 NZ_CP011427.1 Bac0015947 Salmonella enterica subsp. enterica serovar Typhimurium strain "Salmonella enterica subsp. enterica serovar Typhimurium strain is a Gram-negative bacterium characterized by its spirilla shape and a tendency to form chains or exist as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe. It is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. Additionally, this strain exhibits microaerophilic characteristics, requiring lower levels of oxygen for growth compared to atmospheric conditions.↵↵The microaerophilic nature of Salmonella enterica Typhimurium suggests its adaptation to environments where oxygen is limited, such as the gastrointestinal tracts of various hosts. This adaptation may enhance its survival and metabolic efficiency in niche environments within its host, potentially allowing it to exploit specific organic substrates present in these habitats. Understanding the traits of this strain within the context of its ecological niche can offer insights into its interactions with host organisms and its role in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NZ_CP011431.1 Bac0015948 Croceibacterium atlanticum strain 26DY36 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Croceibacterium Croceibacterium atlanticum 1267766 NZ_CP011452.2 Bac0015949 Gemmatimonas phototrophica strain AP64 Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica microaerophile 1379270 NZ_CP011454.1 Bac0015950 Helicobacter pylori strain L7 "Helicobacter pylori strain L7 is a Gram-negative microbe characterized by its distinctive spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, indicating its adaptation to a host-associated habitat. H. pylori strain L7 is classified as microaerophilic, requiring reduced oxygen levels for optimal growth, which is consistent with its colonization of the gastric mucosa where such conditions prevail.↵↵As a member of the Helicobacter genus, strain L7 is likely to exhibit motility due to its spiral shape, a trait that facilitates its movement through the viscous environment of the stomach. The microbe's Gram-negative cell wall structure may influence its interactions with the host immune system and contribute to its survival in the harsh gastric environment. Given its specialized habitat, H. pylori strain L7 plays a significant role in the microbiota of the human stomach, potentially engaging in complex interactions with both the host and other microbial inhabitants.↵↵The unique ecological insight regarding H. pylori strain L7 lies in its potential to influence gastric pH and local microbiome dynamics, which could have implications for digestion and nutrient absorption. Further investigation into this strain could provide valuable information on its role within the gastric ecosystem and its impact on host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP011482.1 Bac0015951 Helicobacter pylori strain DU15 "Helicobacter pylori strain DU15 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to the human gastric environment. H. pylori strain DU15 is classified as microaerophilic, requiring reduced levels of oxygen for growth, which further indicates its specific niche within the host-associated habitat of the stomach.↵↵The microaerophilic nature of H. pylori strain DU15 suggests that it has evolved mechanisms to survive in the low-oxygen conditions of the gastric mucosa, where it can colonize and persist. This adaptation not only allows it to evade the host's immune responses but also highlights its potential role in the complex microbial ecosystems within the gastrointestinal tract. The ability to inhabit such a specialized environment may provide insights into its interactions with other microbial residents of the stomach and the implications for host health and disease. Further research on H. pylori strain DU15 could elucidate its specific ecological roles and contributions to gastric microbiota dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP011483.1 Bac0015952 Helicobacter pylori strain CC33C "Helicobacter pylori strain CC33C is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its typical host environment. As a member of the Helicobacter genus, strain CC33C is associated with specific habitats, primarily within the gastrointestinal tract of hosts, where it contributes to complex microbial communities.↵↵The microaerophilic nature of H. pylori strain CC33C indicates its reliance on a reduced oxygen concentration for growth, which is reflective of its adaptation to the gastric environment where oxygen levels are lower than in ambient air. This adaptation may play a role in its survival and persistence in the host's stomach, a niche characterized by highly acidic conditions. ↵↵Additionally, the solitary arrangement of its cells may suggest a strategy for individual colonization within the host, potentially influencing its interactions with host tissues and other microbial inhabitants. Understanding the specific traits of H. pylori strain CC33C can offer insights into its ecological role within the gastrointestinal microbiome, particularly in how it may affect host health and disease states, highlighting the intricate balance between microbial inhabitants and their host environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP011484.1 Bac0015953 Helicobacter pylori strain PNG84A "Helicobacter pylori strain PNG84A is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe is typically found in host-associated environments, suggesting a close relationship with its biological host. It thrives optimally at 37.0°C, which aligns with the physiological temperature of the human body, indicating its adaptation to a warm-blooded host. ↵↵As a microaerophilic organism, H. pylori strain PNG84A requires reduced levels of oxygen for growth, which further supports its ecological niche within the gastric environment, where oxygen concentration is lower than in the atmosphere. This adaptation not only influences its metabolic processes but may also affect its interactions with the host's immune system.↵↵Understanding the traits of H. pylori strain PNG84A may provide insights into how this microbe navigates its complex habitat. The combination of its Gram-negative structure and microaerophilic requirement suggests potential mechanisms for survival in the acidic gastric environment, possibly contributing to its long-term colonization within the host. This highlights the delicate balance between the bacterium and its host, emphasizing the importance of environmental conditions in shaping microbial behavior and survival strategies." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP011487.1 Bac0015954 Streptomyces sp. CNQ-509 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CNQ-509 444103 NZ_CP011492.1 Bac0015955 Streptomyces incarnatus strain NRRL 8089 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces incarnatus 665007 NZ_CP011497.1 Bac0015956 Burkholderia pyrrocinia strain DSM 10685 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pyrrocinia 60550 NZ_CP011503.1 Bac0015957 Pseudomonas trivialis strain IHBB745 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas trivialis aerobic 200450 NZ_CP011507.1 Bac0015958 Archangium gephyra strain DSM 2261 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra 48 NZ_CP011509.1 Bac0015959 Paenibacillus peoriae strain HS311 "Paenibacillus peoriae strain HS311 is a Gram-positive, rod-shaped bacterium that is primarily found in the rhizosphere, particularly in wheat rhizosphere soil. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which is advantageous for its survival in the diverse conditions present within the soil ecosystem. ↵↵The presence of Paenibacillus peoriae in the rhizosphere suggests potential roles in plant growth promotion or soil health, as members of the Paenibacillus genus are known for their ability to enhance nutrient availability and support plant-microbe interactions. Furthermore, the specific association with wheat rhizosphere soil highlights its potential significance in agricultural contexts, where it may contribute to the overall health of wheat crops and possibly influence soil microbial community dynamics.↵↵Understanding the traits and ecological roles of Paenibacillus peoriae strain HS311 could provide insights into its potential applications in sustainable agriculture, particularly in enhancing soil fertility and promoting plant health in wheat cultivation." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus peoriae positive Rod Yes 1 facultative anaerobe rhizosphere; rhizosphere soil; soil; wheat rhizosphere 59893 NZ_CP011512.1 Bac0015960 Streptomyces sp. CFMR 7 strain CFMR-7 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CFMR 7 1649184 NZ_CP011522.1 Bac0015961 Corynebacterium mustelae strain DSM 45274 "Corynebacterium mustelae strain DSM 45274 is a Gram-positive, rod-shaped bacterium that is characterized by its non-spore-forming nature. This strain belongs to the genus Corynebacterium, which is known for its club-shaped morphology and diverse metabolic capabilities. As a member of the Actinobacteria phylum, Corynebacterium mustelae exhibits typical traits associated with Gram-positive bacteria, including a thick peptidoglycan layer in its cell wall, which contributes to its rigidity and structural integrity.↵↵The rod shape of C. mustelae allows for a range of growth patterns and interactions within its environment, potentially influencing its role in microbial communities. Its non-spore-forming characteristic suggests that the bacterium relies on vegetative growth for reproduction and survival, which may affect its resilience to environmental stressors when compared to spore-forming bacteria. ↵↵Understanding the specific physiological traits of Corynebacterium mustelae strain DSM 45274 can provide insights into its potential roles in various ecological niches, particularly in relation to other microorganisms. Its Gram-positive nature may also indicate a capacity for specific biochemical pathways or interactions with host organisms, although further research would be necessary to elucidate these aspects fully. This strain's adaptability and growth characteristics highlight its potential importance in microbial ecology, especially within habitats influenced by mammalian hosts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium mustelae Gram-positive rod non-spore-forming 571915 NZ_CP011543.1 Bac0015962 Pseudomonas sp. DR 5-09 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. DR 5-09 1534110 NZ_CP011566.1 Bac0015963 Pseudomonas sp. GR 6-02 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GR 6-02 1659194 NZ_CP011567.1 Bac0015964 Phytobacter ursingii strain CAV1151 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Phytobacter Phytobacter ursingii 1972431 NZ_CP011598.1 Bac0015965 Klebsiella oxytoca strain CAV1374 "Klebsiella oxytoca strain CAV1374 is a nonsporulating, rod-shaped, Gram-negative bacterium that exhibits facultative anaerobic metabolism and is classified as a chemoheterotroph. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many human hosts, suggesting its potential adaptability to warm-blooded environments. ↵↵Klebsiella oxytoca is known to inhabit a variety of ecological niches, which may include soil, water, and human-associated environments, reflecting its versatility and ability to exploit diverse substrates for energy. The facultative anaerobic nature of this strain allows it to grow in both the presence and absence of oxygen, further enhancing its adaptability to fluctuating environmental conditions.↵↵Given its wide-ranging habitat preferences and metabolic capabilities, K. oxytoca strain CAV1374 may play a significant role in nutrient cycling within its environment. Its ability to thrive in multiple habitats also suggests potential interactions with other microorganisms, which could influence community dynamics and ecosystem functions. Further investigation into the ecological roles of this strain may provide insights into its contributions to microbial communities and biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 NZ_CP011625.1 Bac0015966 Mycobacterium sp. EPa45 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. EPa45 1545728 NZ_CP011773.1 Bac0015967 Reinekea forsetii strain Hel1_31_D35 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Saccharospirillaceae Reinekea Reinekea forsetii 1336806 NZ_CP011797.1 Bac0015968 Nitrospira moscoviensis strain NSP M-1 Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis 42253 NZ_CP011801.1 Bac0015969 Pandoraea faecigallinarum strain DSM 23572 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea faecigallinarum 656179 NZ_CP011807.3 Bac0015970 Geobacillus sp. 12AMOR1 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. 12AMOR1 1629723 NZ_CP011832.1 Bac0015971 Limnohabitans sp. 103DPR2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Limnohabitans Limnohabitans sp. 103DPR2 1678129 NZ_CP011834.1 Bac0015972 Gordonia phthalatica strain QH-11 "Gordonia phthalatica strain QH-11 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29°C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for survival and reproduction. The Gram-positive nature of Gordonia phthalatica indicates a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria in this group and may contribute to its resilience in various environmental conditions.↵↵As an aerobic organism, strain QH-11 requires oxygen for its metabolic processes, positioning it within environments rich in this gas. The optimal growth temperature of 29°C suggests that this strain may be well-adapted to specific niches that provide suitable thermal conditions, potentially influencing its distribution and interactions within microbial communities. ↵↵Understanding the traits of Gordonia phthalatica strain QH-11 can provide insights into its potential roles in bioremediation or the degradation of organic compounds, given that members of the Gordonia genus are often associated with the breakdown of complex hydrocarbons. The distinctive characteristics of this strain underscore its adaptability and importance in ecological contexts where aerobic degradation processes are critical for nutrient cycling and pollutant remediation." Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia phthalatica Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1136941 NZ_CP011853.1 Bac0015973 Stutzerimonas stutzeri strain SLG510A3-8 "Stutzerimonas stutzeri strain SLG510A3-8 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds. Stutzerimonas stutzeri strain SLG510A3-8 is obligately aerobic, necessitating the presence of oxygen for its metabolic processes. Its habitat is noted to be host-associated, suggesting a potential symbiotic or commensal relationship with a host organism.↵↵The combination of these traits points to a microbe that is well-adapted to environments where organic material and oxygen are readily available, such as within the microbiomes of various hosts. The ability to thrive in aerobic conditions while relying on organic substrates for energy underscores its ecological role in nutrient cycling within host-associated environments. Further exploration of Stutzerimonas stutzeri strain SLG510A3-8 may yield insights into its interactions with host systems, potentially contributing to our understanding of microbial dynamics in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NZ_CP011854.1 Bac0015974 Spiroplasma eriocheiris strain DSM 21848 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma eriocheiris microaerophile 315358 NZ_CP011856.1 Bac0015975 Eubacterium limosum strain SA11 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium limosum rumen 1736 NZ_CP011914.1 Bac0015976 Marinobacter sp. CP1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. CP1 1671721 NZ_CP011929.1 Bac0015977 Haloferax gibbonsii strain ARA6 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax gibbonsii 35746 NZ_CP011951.1 Bac0015978 Bifidobacterium longum subsp. longum strain CCUG30698 "Bifidobacterium longum subsp. longum strain CCUG30698 is a Gram-positive, non-sporulating rod-shaped bacterium that typically forms clusters, pairs, or exists as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to the warm environment of the host. As an anaerobe, B. longum subsp. longum strain CCUG30698 requires environments devoid of oxygen for growth, which aligns with its habitat as a host-associated microbe.↵↵Bifidobacteria, including this particular strain, are commonly found in the gastrointestinal tract of mammals, where they play a crucial role in maintaining gut health and contributing to the host's microbiota balance. The presence of this strain in the microbiome may be linked to various beneficial functions, such as the fermentation of dietary fibers, production of short-chain fatty acids, and modulation of the immune response. While specific ecological interactions of strain CCUG30698 are not detailed, its classification within a well-studied genus suggests potential contributions to host health and metabolic processes. The adaptability of this strain to anaerobic conditions and its association with the host environment highlight its importance in the study of gut microbiology and its potential implications for therapeutic applications in managing dysbiosis and enhancing gut health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 NZ_CP011965.1 Bac0015979 Priestia filamentosa strain Hbe603 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia filamentosa 1402861 NZ_CP011974.1 Bac0015980 Ectothiorhodospira sp. BSL-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Ectothiorhodospira Ectothiorhodospira sp. BSL-9 1442136 NZ_CP011994.1 Bac0015981 Celeribacter marinus strain IMCC12053 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter marinus 1397108 NZ_CP012023.1 Bac0015982 Bacillus smithii strain DSM 4216 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus smithii 1479 NZ_CP012025.1 Bac0015983 Leptospira borgpetersenii serovar Ballum strain 56604 "Leptospira borgpetersenii serovar Ballum strain 56604 is a Gram-negative, non-sporulating bacterium characterized by its spirilla shape and aerobic metabolism. This strain is part of the Leptospira genus, which is known for its helical morphology and motility, traits that facilitate its survival in host-associated environments. ↵↵As an aerobic organism, L. borgpetersenii serovar Ballum strain 56604 requires oxygen for its growth and metabolic processes, highlighting its adaptation to oxygen-rich niches within its host. The non-sporulating nature of this strain suggests a reliance on host-associated habitats for survival, as it does not produce spores for resilience against environmental stresses. ↵↵The specific habitat of this strain within host organisms may influence its interactions with the host's immune system, potentially affecting its physiological and biological behaviors. Understanding the ecological role of L. borgpetersenii serovar Ballum strain 56604 within its host may provide insights into the dynamics of host-microbe interactions, particularly in the context of aerobic environments that support its life cycle." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 174 NZ_CP012029.1 Bac0015984 Xanthomonas phaseoli pv. phaseoli strain ISO18C2 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas phaseoli 1985254 NZ_CP012048.1 Bac0015985 Xanthomonas citri pv. fuscans strain ISO118C1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri fruit surfaces; leaf surface; leaf surfaces 346 NZ_CP012053.1 Bac0015986 Xanthomonas phaseoli pv. phaseoli strain ISO98C12 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas phaseoli 1985254 NZ_CP012057.1 Bac0015987 Xanthomonas phaseoli pv. phaseoli strain ISO18C8 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas phaseoli 1985254 NZ_CP012065.1 Bac0015988 Arsenicicoccus sp. oral taxon 190 strain F0371 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Arsenicicoccus Arsenicicoccus sp. oral taxon 190 1658671 NZ_CP012070.1 Bac0015989 Selenomonas sp. oral taxon 478 strain F0592 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 478 712538 NZ_CP012071.1 Bac0015990 Ottowia sp. oral taxon 894 strain W10237 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Ottowia Ottowia sp. oral taxon 894 1658672 NZ_CP012073.1 Bac0015991 Bacillus thuringiensis strain HS18-1 "Bacillus thuringiensis strain HS18-1 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is categorized as a facultative anaerobe. This strain is primarily found in host-associated habitats, indicating its ecological niche may involve associations with specific organisms, potentially including plants or insects.↵↵As a member of the Bacillus genus, strain HS18-1 is capable of forming durable spores, which enable it to survive in various environmental conditions that may be unfavorable for vegetative growth. The facultative anaerobic nature of this strain allows it to thrive in both aerobic and anaerobic environments, suggesting adaptability in diverse ecological contexts where oxygen levels may fluctuate.↵↵In terms of its ecological role, B. thuringiensis strains are commonly recognized for their involvement in agricultural contexts, typically as biological control agents against various pest species. While the specific interactions and effects of strain HS18-1 on its host organisms require further investigation, its host-associated habitat hints at potential beneficial interactions or symbiotic relationships.↵↵Overall, the traits of Bacillus thuringiensis strain HS18-1 underscore its adaptability and potential significance in natural ecosystems, particularly in relation to its interactions with host organisms, which may contribute to pest management strategies in agricultural practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP012099.1 Bac0015992 Shigella flexneri 4c strain 1205 "Shigella flexneri 4c strain 1205 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is nonsporulating and exhibits facultative anaerobic metabolism, indicating its ability to thrive in both the presence and absence of oxygen. As a chemoorganotroph, S. flexneri 4c strain 1205 derives its energy from organic compounds, which aligns with its habitat being primarily host-associated. The optimal growth temperature for this strain is around 37.0°C, a condition that coincides with the average human body temperature, suggesting a close adaptation to its host environment.↵↵The facultative nature of S. flexneri 4c strain 1205, coupled with its nonsporulating characteristic, may contribute to its survival and proliferation within host organisms, where it can exploit various metabolic pathways to adapt to changing environmental conditions. This adaptability hints at the bacterium's potential for persistence within the gastrointestinal tract, where it would encounter fluctuating oxygen levels and a diverse array of organic substrates. Understanding the metabolic flexibility and ecological niche of S. flexneri 4c strain 1205 can provide valuable insights into its role within host-associated microbial communities and its implications for human health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 623 NZ_CP012141.1 Bac0015993 Leptospirillum sp. Group II 'CF-1' Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum sp. Group II 'CF-1' 1660083 NZ_CP012147.1 Bac0015994 Mycolicibacterium goodii strain X7B Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium goodii 134601 NZ_CP012150.1 Bac0015995 Chondromyces crocatus strain Cm c5 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus 52 NZ_CP012159.1 Bac0015996 Octadecabacter temperatus strain SB1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Octadecabacter Octadecabacter temperatus 1458307 NZ_CP012160.1 Bac0015997 Metallosphaera sedula strain ARS50-1 "Metallosphaera sedula strain ARS50-1 is a Gram-negative coccoid bacterium characterized by its single-cell arrangement and its adaptation to a specialized habitat. This strain thrives optimally at a temperature of 70.0°C, indicating its thermophilic nature, which is typical for organisms found in extreme environments, such as hot springs or hydrothermal vents. As an aerobic microorganism, M. sedula strain ARS50-1 requires oxygen for its metabolic processes, which is a crucial trait for understanding its ecological niche and potential applications in biotechnology.↵↵The specialized habitat of M. sedula strain ARS50-1 suggests that it plays a significant role in specific biogeochemical cycles, particularly in high-temperature environments where other organisms may struggle to survive. The ability of this strain to endure extreme temperatures and its aerobic nature could imply its involvement in the oxidation of inorganic compounds, contributing to the microbial community dynamics in its natural habitat. Understanding the traits of M. sedula strain ARS50-1 may offer insights into the adaptability and metabolic versatility of extremophiles, which could have implications for biotechnological applications in bioleaching and bioremediation in high-temperature settings." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles 43687 NZ_CP012172.1 Bac0015998 Metallosphaera sedula strain ARS50-2 "Metallosphaera sedula strain ARS50-2 is a Gram-negative coccoid bacterium that thrives in specialized habitats, exhibiting optimal growth at a temperature of 70.0 °C. This strain is characterized by its single-cell arrangement, which distinguishes it from other microbial forms that may cluster or form chains. Being an aerobic organism, M. sedula strain ARS50-2 requires oxygen for its metabolic processes, suggesting that it plays a role in environments where oxygen is available and possibly limited to high-temperature niches. ↵↵The unique combination of traits such as its coccoid shape, Gram-negative cell wall structure, and thermophilic nature indicates that M. sedula strain ARS50-2 is well-adapted to extreme environments, likely contributing to biogeochemical cycles in geothermal systems or similar high-temperature ecosystems. Understanding the physiology of this strain may provide insights into the adaptations necessary for life in extreme conditions and could have implications for biotechnological applications involving thermophilic processes." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles 43687 NZ_CP012173.1 Bac0015999 Burkholderia sp. HB1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. HB1 1678678 NZ_CP012192.1 Bac0016000 Pediococcus damnosus strain TMW 2.1535 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus damnosus 51663 NZ_CP012288.1 Bac0016001 Spiroplasma turonicum strain Tab4c Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma turonicum microaerophile 216946 NZ_CP012328.1 Bac0016002 Bordetella sp. H567 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella sp. H567 1697043 NZ_CP012334.1 Bac0016003 Corynebacterium riegelii strain PUDD_83A45 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium riegelii 156976 NZ_CP012342.1 Bac0016004 Spiroplasma litorale strain TN-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma litorale microaerophile 216942 NZ_CP012357.1 Bac0016005 Thiopseudomonas alkaliphila strain E5571 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Thiopseudomonas Thiopseudomonas alkaliphila 1697053 NZ_CP012365.1 Bac0016006 Lawsonella clevelandensis strain X1698 Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis 1528099 NZ_CP012390.1 Bac0016007 Piscirickettsia salmonis strain PM15972A1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsia Piscirickettsia salmonis 1238 NZ_CP012413.1 Bac0016008 Kangiella sediminilitoris strain KCTC 23892 "Kangiella sediminilitoris strain KCTC 23892 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 32.0°C. This strain is part of the Kangiella genus, which is characterized by its aquatic habitat and potential utility in biotechnological applications due to its metabolic versatility. The rod shape of K. sediminilitoris suggests adaptations for motility and nutrient acquisition in sedimentary environments, where it may play a role in biogeochemical cycling. ↵↵While its specific ecological roles remain to be fully elucidated, the growth conditions of K. sediminilitoris strain KCTC 23892 indicate a possible preference for moderate temperature environments, which aligns with its isolation from sediment. The non-spore-forming nature of this strain implies a reliance on moisture and nutrient availability for survival, as opposed to forming spores for dormancy under unfavorable conditions. Understanding the physiological traits and optimal growth parameters of K. sediminilitoris can provide insights into its ecological niche and potential contributions to sedimentary microbial communities. The study of such organisms is essential for comprehending the dynamics of microbial life in aquatic sediments, which are important reservoirs for biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Kangiellales Kangiellaceae Kangiella Kangiella sediminilitoris Gram-negative rod non-motile 32 mesophilic non-spore-forming 1144748 NZ_CP012418.1 Bac0016009 Enterobacter sp. FY-07 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. FY-07 1692238 NZ_CP012487.1 Bac0016010 Escherichia coli strain 06-00048 "Escherichia coli strain 06-00048 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions found within many host organisms. As a facultative anaerobe, E. coli strain 06-00048 possesses the metabolic versatility to utilize oxygen when available, but it can also grow in its absence, allowing it to successfully colonize diverse host environments.↵↵The habitat of this strain is characterized as host-associated, indicating a potential symbiotic or opportunistic relationship with its host. Such associations are common among E. coli strains, which can inhabit the intestines of warm-blooded animals, including humans. The ability of E. coli strain 06-00048 to adapt to varying oxygen conditions and to thrive within the host's internal environment may offer insights into its ecological role in nutrient cycling and gut microbiome dynamics.↵↵Overall, the versatility in metabolic pathways and the specific ecological niche occupied by Escherichia coli strain 06-00048 highlight the complexity of host-microbe interactions, suggesting that this strain may contribute to the maintenance of gut health or play a role in the microbial community's resilience under fluctuating environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP012498.1 Bac0016011 Salisediminibacterium beveridgei strain MLTeJB Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salisediminibacterium Salisediminibacterium beveridgei 632773 NZ_CP012502.1 Bac0016012 Piscirickettsia salmonis strain PM32597B1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsia Piscirickettsia salmonis 1238 NZ_CP012508.1 Bac0016013 Companilactobacillus heilongjiangensis strain DSM 28069 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus heilongjiangensis 1074467 NZ_CP012559.1 Bac0016014 Flavobacterium psychrophilum strain Z2 "Flavobacterium psychrophilum strain Z2 is a nonsporulating, rod-shaped bacterium that thrives optimally at a temperature of 15.0°C. This strain is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon, which it likely sources from its diverse habitats. The ability to grow at low temperatures suggests a potential adaptation to cold environments, which may include aquatic systems or cold soil.↵↵In terms of its ecological role, Flavobacterium psychrophilum strain Z2 may contribute to the decomposition of organic matter in its habitat, facilitating nutrient cycling. Such bacteria are often involved in the breakdown of complex organic materials, potentially influencing the dynamics of microbial communities in cold environments. The nonsporulating nature of this strain further implies a strategy focused on rapid growth and reproduction in stable conditions rather than survival in fluctuating environments, which is characteristic of many psychrophilic microorganisms. This trait could affect its interactions with other microbial populations, possibly leading to competitive advantages in nutrient-limited cold habitats. Overall, Flavobacterium psychrophilum strain Z2 exemplifies the adaptations of psychrophilic bacteria to specific ecological niches, underscoring the diversity of life forms that thrive in low-temperature environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum Rod No 1 15 Chemoheterotroph Psychrophilic Multiple Nonsporulating 96345 NZ_CP012586.1 Bac0016015 Capnocytophaga sp. oral taxon 323 strain F0383 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 323 1705617 NZ_CP012589.1 Bac0016016 Bacillus sp. FJAT-18017 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. FJAT-18017 1705566 NZ_CP012602.1 Bac0016017 Acinetobacter sp. TTH0-4 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. TTH0-4 1646498 NZ_CP012608.1 Bac0016018 Spiroplasma cantharicola strain CC-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma cantharicola microaerophile 362837 NZ_CP012622.1 Bac0016019 Rufibacter tibetensis strain 1351 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Rufibacter Rufibacter tibetensis 512763 NZ_CP012645.1 Bac0016020 Streptococcus mitis strain KCOM 1350 (= ChDC B183) "Streptococcus mitis strain KCOM 1350 (also designated as ChDC B183) is a Gram-positive cocci characterized by its arrangement in chains and pairs. This strain is nonsporulating and exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. mitis strain KCOM 1350 is typically found in the oral cavity and other mucosal surfaces of mammals, where it may play a role in the commensal microbiota.↵↵The ability of S. mitis to grow in varying oxygen conditions suggests its adaptability to different niches within the host environment. This trait is particularly relevant in the context of microbial communities, where competition for resources and interaction with other microbial species can influence survival and proliferation. Furthermore, its chain and pair formation may facilitate communication and cooperation among cells, potentially enhancing its resilience in fluctuating host conditions. Overall, S. mitis strain KCOM 1350 exemplifies the ecological versatility of streptococci in host-associated environments, contributing to a complex interplay of microbial dynamics within the oral and systemic microbiomes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 NZ_CP012646.1 Bac0016021 Streptococcus gordonii strain KCOM 1506 (= ChDC B679) "Streptococcus gordonii strain KCOM 1506 (also known as ChDC B679) is a Gram-positive, coccoid bacterium that typically arranges itself in chains and pairs. This strain is a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 37.0°C, which aligns with its habitat in host-associated environments.↵↵As a member of the Streptococcus genus, S. gordonii is often found as part of the normal flora in the human oral cavity, contributing to the complex microbial community present in this niche. Its status as a facultative anaerobe suggests that it plays a versatile role in the metabolic processes occurring within the host, particularly in the dental biofilm where it may interact with other microbial species.↵↵The ability of S. gordonii to thrive at body temperature makes it well-suited for life in mammals, where it can engage in various symbiotic relationships. This strain's specific ecological niche may reflect its evolutionary adaptations, enabling it to participate in the maintenance of oral health and potentially influencing host-microbe interactions. Additionally, its arrangement in chains and pairs may facilitate communication and cooperation among cells, which could play a critical role in its survival and function within the host-associated habitat." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1302 NZ_CP012648.1 Bac0016022 Frigidibacter mobilis strain cai42 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Frigidibacter Frigidibacter mobilis 1335048 NZ_CP012661.1 Bac0016023 Sorangium cellulosum strain So ceGT47 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 56 NZ_CP012670.1 Bac0016024 Sorangium cellulosum strain So ce26 Pseudomonadati Myxococcota Polyangiales Polyangiaceae Sorangium Sorangium cellulosum 56 NZ_CP012673.1 Bac0016025 Pseudomonas versuta strain L10.10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas versuta 1788301 NZ_CP012676.1 Bac0016026 Arthrobacter alpinus strain R3.8 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter alpinus 656366 NZ_CP012677.1 Bac0016027 Psychrobacter urativorans strain R310.10B Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter urativorans 45610 NZ_CP012678.1 Bac0016028 Sphingopyxis macrogoltabida strain EY-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis macrogoltabida 33050 NZ_CP012700.1 Bac0016029 Fusobacterium animalis strain KCOM 1279 "Fusobacterium animalis strain KCOM 1279 is a Gram-negative, rod-shaped bacterium that exhibits an anaerobic lifestyle and is nonsporulating. This strain thrives optimally at a temperature of 37.0°C, suggesting a preference for physiological conditions similar to those found in warm-blooded hosts. As a member of the Fusobacterium genus, F. animalis is typically associated with host environments, indicating its potential role in the microbiota of various animals.↵↵The anaerobic nature of this bacterium implies that it may engage in metabolic processes that do not require oxygen, potentially utilizing fermentation pathways to derive energy from organic substrates present in its host environment. Given its specific habitat and conditions, F. animalis strain KCOM 1279 may play a role in the complex interactions within the microbial community of its host, contributing to the overall homeostasis and health of the associated ecosystem.↵↵Understanding the characteristics of F. animalis strain KCOM 1279 enhances our knowledge of anaerobic microbial life and its adaptation to host-associated habitats, paving the way for further research into its biological functions and interactions within the microbiome." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 76859 NZ_CP012713.1 Bac0016030 Glutamicibacter halophytocola strain KLBMP 5180 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter halophytocola 1933880 NZ_CP012750.1 Bac0016031 Bacteroides cellulosilyticus strain WH2 "Bacteroides cellulosilyticus strain WH2 is a Gram-negative, anaerobic bacterium primarily found in the gastrointestinal tract. This strain is notable for its ability to degrade cellulose, which suggests a specialized role in the breakdown of complex carbohydrates within the gut environment. As an anaerobe, B. cellulosilyticus strain WH2 thrives in low-oxygen conditions, which are characteristic of the gastrointestinal niche, facilitating the fermentation of plant materials.↵↵The presence of B. cellulosilyticus in the gut microbiota may contribute to the overall health of the host by aiding in the digestion of fibrous foods and supporting the fermentation processes that yield short-chain fatty acids, essential for colonic health. This strain’s cellulose-degrading capabilities indicate its potential role in nutrient cycling and energy extraction from dietary fibers, highlighting its ecological significance in maintaining a balanced gut microbiome.↵↵The metabolic interactions of B. cellulosilyticus strain WH2 with other gut microbes could further influence the microbiota composition and functionality, emphasizing the intricate relationships within the gastrointestinal ecosystem. Understanding the specific contributions of this strain to gut health and its potential applications in biotechnology or health promotion may offer insights into the broader implications of gut microbiome dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus Negative Anaerobe gastrointestinal tract 246787 NZ_CP012801.1 Bac0016032 Algoriphagus sanaruensis strain M8-2 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus sanaruensis 1727163 NZ_CP012836.1 Bac0016033 Weissella cibaria strain CH2 "Weissella cibaria strain CH2 is a Gram-negative, facultative anaerobic bacterium primarily associated with diverse habitats, including traditional Korean kimchi, tropical fruits, pasture environments, and even human saliva. This strain exemplifies the versatility of Weissella species in thriving in both fermented food matrices and natural ecosystems.↵↵The isolation of Weissella cibaria from various substrates highlights its potential role in fermentation processes, particularly in the production of kimchi, where it may contribute to flavor development and microbial diversity. Its presence in tropical fruits suggests a possible involvement in the fermentation of these foods, which could enhance their preservation and nutritional value.↵↵Furthermore, the detection of Weissella cibaria in pastoral and soil habitats indicates its ecological adaptability and potential interactions within microbial communities. The facultative anaerobic nature of this strain allows it to survive in both oxygen-rich and oxygen-poor environments, which may facilitate its colonization and persistence in varied ecological niches.↵↵This adaptability may also suggest that Weissella cibaria strain CH2 could play a role in the fermentation processes beyond those traditionally associated with its use in food production, potentially influencing the microbial dynamics of its diverse habitats. Understanding the ecological roles of such strains can provide insights into their contributions to food microbiology and environmental microbiomes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella cibaria Negative Facultative anaerobe Chili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits 137591 NZ_CP012873.1 Bac0016034 Lactobacillus gallinarum strain HFD4 "Lactobacillus gallinarum strain HFD4 is a Gram-positive, rod-shaped bacterium that belongs to the genus Lactobacillus. This strain is characterized by its robust cell wall structure, a feature typical of Gram-positive bacteria, which may contribute to its resilience in various environments. Lactobacillus species are commonly known for their role in fermentation processes and their potential applications in food production, particularly in the dairy industry. ↵↵The rod shape of strain HFD4 suggests a level of metabolic versatility, enabling it to adapt to different substrates. This morphological trait is often associated with efficient utilization of available nutrients, which could be beneficial in competitive environments such as the gastrointestinal tracts of animals. ↵↵Although specific details regarding its metabolic pathways or ecological role are not provided, the presence of Lactobacillus gallinarum in various habitats may indicate its significance in microbial communities, especially those associated with poultry. The adaptability of Lactobacillus species to diverse conditions makes them important contributors to microbial balance and fermentation processes. ↵↵Overall, Lactobacillus gallinarum strain HFD4 exemplifies the characteristics of Lactobacillus species, and its rod-shaped morphology may facilitate its functionality in nutrient-rich environments, potentially influencing the dynamics of microbial ecosystems in which it resides." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gallinarum Positive Rod 52242 NZ_CP012890.1 Bac0016035 Stenotrophomonas acidaminiphila strain ZAC14D2_NAIMI4_2 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas acidaminiphila 128780 NZ_CP012900.1 Bac0016036 Helicobacter pylori strain 7C "Helicobacter pylori strain 7C is a Gram-negative bacterium characterized by its distinctive spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to the human gastric environment. As a microaerophilic organism, H. pylori strain 7C requires reduced levels of oxygen for growth, reflecting its specialized niche within the host-associated habitat of the stomach. ↵↵The microbe's spiral morphology may contribute to its ability to navigate the viscous mucus layer of the gastric epithelium, facilitating colonization and persistence in a challenging environment characterized by acidic pH levels. Given its specific oxygen requirements and optimal growth temperature, H. pylori strain 7C likely exhibits metabolic adaptations that enable it to survive and thrive in the unique conditions of the gastric milieu.↵↵Understanding the physiological traits of H. pylori strain 7C can provide insights into its ecological role in the human stomach, where it may influence gastric microbiota composition and host health. The microbe's microaerophilic nature suggests a potential interplay with other gut microorganisms, highlighting the intricate balance of microbial communities in the human gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP012906.1 Bac0016037 Helicobacter pylori strain 29CaP "Helicobacter pylori strain 29CaP is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and occurrence as single cells. This strain thrives optimally at a temperature of 37.0°C, suggesting an adaptation to the warm environment of the host's gastric mucosa. As a host-associated organism, H. pylori strain 29CaP is likely to play a role in the complex microbial community of the stomach, where it may influence local pH and contribute to the host's gastrointestinal health.↵↵The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for growth, which aligns with its habitat in the oxygen-limited environment of the gastric epithelium. This unique adaptation aids in its survival and proliferation within the host, potentially impacting the overall composition of the gastric microbiome. ↵↵Understanding the specific traits of Helicobacter pylori strain 29CaP provides insight into its ecological niche and the evolutionary pressures that shape its physiology. The interplay between its microaerophilic requirement and host-associated lifestyle may influence not only its survival strategies but also its interactions with other microbial inhabitants of the stomach, highlighting the intricate dynamics of host-microbe relationships in gastrointestinal ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP012907.1 Bac0016038 Streptococcus suis strain NSUI060 "Streptococcus suis strain NSUI060 is a Gram-positive cocci that typically arranges itself in chains, pairs, or singles. This bacterium thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to warm-blooded hosts. As a facultative anaerobe, S. suis strain NSUI060 can grow in both aerobic and anaerobic environments, which may enhance its survival in diverse habitats.↵↵The specialized habitat of this strain indicates a particular ecological niche, possibly associated with host organisms or specific environmental conditions that favor its growth and proliferation. The ability to form chains and pairs may facilitate its colonization and persistence in such habitats. Given the known characteristics of Streptococcus suis as a genus, it is plausible that strain NSUI060 may play a role in specific microbial communities, interacting with other microorganisms and potentially influencing local ecological dynamics.↵↵In summary, the unique combination of traits exhibited by Streptococcus suis strain NSUI060 highlights its adaptability and potential ecological roles, particularly in warm-blooded hosts or specialized environments, where it may contribute to complex microbial interactions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP012911.1 Bac0016039 Bacteroides thetaiotaomicron strain 7330 "Bacteroides thetaiotaomicron strain 7330 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments, specifically associated with host organisms. This species is predominantly found in the gut microbiota, where it plays a critical role in the digestion of complex carbohydrates and the modulation of the host immune response. As an anaerobe, B. thetaiotaomicron relies on fermentation processes, utilizing a variety of polysaccharides as carbon sources, which underscores its importance in nutrient metabolism within the gastrointestinal tract.↵↵The ability of B. thetaiotaomicron to break down complex carbohydrates not only aids digestion but also contributes to the overall homeostasis of the gut microbiome. By producing short-chain fatty acids (SCFAs) during fermentation, this bacterium supports gut health and provides energy to colonocytes, the cells lining the intestinal wall. Furthermore, the modulation of the host's immune system by B. thetaiotaomicron may influence the balance of microbial communities, potentially impacting health and disease states.↵↵This strain exemplifies the intricate relationships between host-associated microbes and their hosts, highlighting the significance of gut microbiota in nutrient processing and immune modulation. Understanding the functions of B. thetaiotaomicron could provide insights into therapeutic strategies for managing gut-related disorders and enhancing overall health through microbiome management." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 818 NZ_CP012937.1 Bac0016040 Psychrobacter sp. AntiMn-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. AntiMn-1 1720344 NZ_CP012969.1 Bac0016041 Caulobacter henricii strain CB4 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter henricii 69395 NZ_CP013003.1 Bac0016042 Candidatus Desulfofervidus auxilii strain HS1 Pseudomonadati Thermodesulfobacteriota Candidatus Desulfofervidia Candidatus Desulfofervidales Candidatus Desulfofervidaceae Candidatus Desulfofervidus Candidatus Desulfofervidus auxilii 1621989 NZ_CP013015.1 Bac0016043 Bacteroides vulgatus strain mpk "Bacteroides vulgatus strain mpk is a Gram-positive, rod-shaped bacterium that exists predominantly as single cells and is classified as an anaerobe, indicating its growth occurs in environments devoid of oxygen. This microbe is host-associated, suggesting a symbiotic relationship with the host organism, typically residing in the gastrointestinal tract of humans and other animals. Its anaerobic nature allows it to thrive in the oxygen-poor conditions of the gut, where it plays a pivotal role in the fermentation of complex carbohydrates and the maintenance of gut homeostasis.↵↵The presence of Bacteroides vulgatus strain mpk within the host may contribute to various metabolic processes, including the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Understanding the specific contributions of this strain within the broader context of the gut microbiome can enhance our knowledge of microbial ecology and host-microbe interactions. Given its habitat and traits, Bacteroides vulgatus strain mpk exemplifies the complex relationships that microorganisms form with their hosts, highlighting the importance of anaerobic bacteria in digestive health and metabolic functions within the gastrointestinal ecosystem." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 NZ_CP013020.1 Bac0016044 Escherichia coli strain 2009C-3133 "Escherichia coli strain 2009C-3133 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of many host organisms, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 2009C-3133 can grow in both the presence and absence of oxygen, allowing it to inhabit various environments within a host where oxygen levels may fluctuate. ↵↵The ability of this strain to survive and proliferate in diverse conditions highlights its ecological versatility and potential interactions within the host's microbiome. These traits suggest that E. coli strain 2009C-3133 may play a role in the complex relationships between gut microbiota and host health, further underscoring the significance of understanding such strains in the broader context of microbial ecology and host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP013024.1 Bac0016045 Clostridium perfringens strain JP838 "Clostridium perfringens strain JP838 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, singles, or chains. This strain thrives optimally at 37.0°C, which is indicative of its adaptation to host-associated environments, where it likely engages in anaerobic metabolism as a chemoorganotroph. ↵↵As an anaerobic organism, C. perfringens strain JP838 relies on the absence of oxygen for its energy metabolism, a trait that aligns with its ecological niche within the gastrointestinal tracts of various hosts. The ability to form different cellular arrangements, including pairs and chains, may facilitate its survival and colonization in such anaerobic habitats. ↵↵Given its habitat and metabolic characteristics, C. perfringens strain JP838 may play a significant role in the complex microbial communities found in host intestines, contributing to various biochemical processes, including fermentation and nutrient cycling. This underscores the potential importance of this strain in maintaining gut homeostasis and its interactions with the host's immune system and other microbial inhabitants. These traits highlight the intricate balance of microbial life within host-associated ecosystems and the need for further research to elucidate the specific roles of such strains in health and disease contexts." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 NZ_CP013040.1 Bac0016046 Pannonibacter phragmitetus strain 31801 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Pannonibacter Pannonibacter phragmitetus 121719 NZ_CP013069.1 Bac0016047 Sinorhizobium americanum strain CFNEI 73 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium americanum 194963 NZ_CP013110.1 Bac0016048 Bordetella sp. N Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella sp. N 1746199 NZ_CP013111.1 Bac0016049 Alcaligenes faecalis strain ZD02 "Alcaligenes faecalis strain ZD02 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds, which suggests its potential versatility in utilizing various substrates. Alcaligenes faecalis strain ZD02 is an aerobic organism, requiring oxygen for its metabolic processes, which aligns with its habitat preferences that encompass multiple environments.↵↵The ability to thrive in diverse habitats may reflect the organism's adaptability and metabolic flexibility. Such traits could enable Alcaligenes faecalis strain ZD02 to play a role in biogeochemical cycles, particularly in the degradation of organic matter in various ecosystems. The combination of its aerobic nature and heterotrophic metabolism positions this strain as a potential contributor to nutrient cycling, particularly in environments rich in organic pollutants or waste products. Further investigation into its specific ecological interactions and metabolic pathways could provide valuable insights into its functional roles within microbial communities." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles NZ_CP013119 Bac0016050 Alteromonas stellipolaris LMG 21856 "Alteromonas stellipolaris LMG 21856 is a Gram-negative, aerobic, rod-shaped bacterium known for its unique adaptations to marine environments. This non-spore-forming microbe is characterized by its rod-like morphology, which is typical of many members within the Alteromonadaceae family. The aerobic nature of A. stellipolaris suggests a preference for oxygen-rich environments, which aligns with its habitat in ocean waters where oxygen availability is often abundant.↵↵The organism’s Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a feature that may contribute to its survival in competitive marine ecosystems. Although the specific metabolic pathways and substrates utilized by A. stellipolaris are not detailed in the provided traits, its classification within the Alteromonas genus implies potential involvement in nutrient cycling and interactions with other marine microorganisms.↵↵The ecological significance of Alteromonas stellipolaris may be underscored by its potential role in the degradation of organic materials in marine environments, contributing to the overall health and balance of marine ecosystems. Given its aerobic nature, this bacterium may also play a role in influencing local oxygen dynamics and participating in the biological processes that sustain marine life. Understanding the traits of A. stellipolaris can provide insights into the complex interactions and functions of microbial communities in oceanic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas stellipolaris Gram-negative rod motile aerobic non-spore-forming 1160720 NZ_CP013120.1 Bac0016051 Streptomyces venezuelae strain ATCC 15439 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces venezuelae 54571 NZ_CP013129.1 Bac0016052 Rickettsia rhipicephali strain HJ#5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia rhipicephali 33992 NZ_CP013133.1 Bac0016053 Lysobacter enzymogenes strain C3 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter enzymogenes soil 69 NZ_CP013140.1 Bac0016054 Colwellia sp. MT41 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. MT41 58049 NZ_CP013145.1 Bac0016055 Pseudoalteromonas phenolica strain KCTC 12086 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas phenolica 161398 NZ_CP013187.1 Bac0016056 Pseudohongiella spirulinae strain KCTC 32221 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudohongiellaceae Pseudohongiella Pseudohongiella spirulinae 1249552 NZ_CP013189.1 Bac0016057 Hoylesella enoeca strain F0113 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella enoeca 76123 NZ_CP013195.1 Bac0016058 Arthrobacter alpinus strain ERGS4:06 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter alpinus 656366 NZ_CP013201.1 Bac0016059 Kurthia sp. 11kri321 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Kurthia Kurthia sp. 11kri321 1750719 NZ_CP013217.1 Bac0016060 Streptomyces hygroscopicus subsp. limoneus strain KCTC 1717 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hygroscopicus 1912 NZ_CP013219.1 Bac0016061 Collimonas fungivorans strain Ter6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas fungivorans 158899 NZ_CP013232.1 Bac0016062 Collimonas pratensis strain Ter91 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas pratensis 279113 NZ_CP013234.1 Bac0016063 Collimonas arenae strain Ter282 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas arenae 279058 NZ_CP013235.1 Bac0016064 Clostridium sporogenes strain CDC_67071 "Clostridium sporogenes strain CDC_67071 is a Gram-positive anaerobic bacterium primarily found in diverse habitats such as the caecum, colon, and intestine of various animals, as well as in dairy products and pit mud. This strain thrives in oxygen-depleted environments, reflecting its strict anaerobic nature. C. sporogenes is known for its ability to ferment a wide range of substrates, which allows it to play a significant role in the decomposition of organic matter in anaerobic ecosystems, particularly within the gut microbiota.↵↵In addition to its presence in animal intestines, C. sporogenes is also associated with certain fermented dairy products and cheese, where it may contribute to flavor development through its metabolic activities. The strain's adaptability to various anaerobic niches, including both natural environments like the gut and artificial settings such as dairy production, highlights its ecological versatility.↵↵Understanding the ecological role of C. sporogenes strain CDC_67071 could provide insights into its potential applications in food fermentation processes and bioremediation, as its metabolic pathways may aid in the breakdown of complex organic compounds in anaerobic conditions. This adaptability underscores the importance of anaerobic bacteria in nutrient cycling and organic matter decomposition within various ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sporogenes Positive Anaerobe caecum; cheese; colon; dairy products; gut; intestine; pit mud 1509 NZ_CP013241.1 Bac0016065 Endozoicomonas montiporae CL-33 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Endozoicomonas Endozoicomonas montiporae 570277 NZ_CP013251.1 Bac0016066 Kocuria flava strain HO-9041 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria flava air; airborne 446860 NZ_CP013254.1 Bac0016067 Sphingobium baderi strain DE-13 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium wenxiniae 595605 NZ_CP013265.1 Bac0016068 Fusobacterium polymorphum strain ChDC F319 "Fusobacterium polymorphum strain ChDC F319 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs and is characterized as a nonsporulating organism. This strain is a chemoheterotroph, deriving its energy from organic compounds, and thrives in anaerobic conditions, making it well-adapted to its habitat within the host gut. The optimal growth temperature for this strain is approximately 37.0 degrees Celsius, which aligns with the physiological temperature of many host organisms.↵↵As a member of the gut microbiota, Fusobacterium polymorphum strain ChDC F319 may play a role in the complex interactions within the gastrointestinal ecosystem, contributing to the metabolic processes that facilitate nutrient absorption and maintain gut homeostasis. The anaerobic nature of this strain suggests it may be involved in the fermentation of substrates that are otherwise indigestible by the host, potentially influencing the overall health and microbial diversity of the gut environment. Understanding the specific functions and interactions of this strain could provide insights into its contributions to host health and disease dynamics within the gut microbiome." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 NZ_CP013328.1 Bac0016069 Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingopyxidaceae Sphingopyxis Sphingopyxis terrae 33052 NZ_CP013342.1 Bac0016070 Paraburkholderia caribensis strain Bcrs1W Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caribensis 75105 NZ_CP013347.1 Bac0016071 Burkholderia mayonis strain BDU8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia mayonis 1385591 NZ_CP013389.1 Bac0016072 Burkholderia metallica strain FL-6-5-30-S1-D7 "Burkholderia metallica strain FL-6-5-30-S1-D7 is a Gram-negative, aerobic, rod-shaped bacterium characterized by its non-spore-forming nature. This strain belongs to the genus Burkholderia, which is known for its metabolic versatility and ability to thrive in diverse environments. The Gram-negative cell wall structure of strain FL-6-5-30-S1-D7 suggests the presence of an outer membrane that may contribute to its resistance to certain antibiotics and environmental stressors, a trait often observed in members of this genus.↵↵The aerobic requirement indicates that this strain utilizes oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. The rod shape is typical of many bacteria and often relates to specific growth patterns and motility, although motility traits are not specified for this strain.↵↵Given its aerobic metabolism and the characteristics typical of Burkholderia species, strain FL-6-5-30-S1-D7 may play a significant role in biogeochemical cycles, particularly in environments where oxygen is present. Its potential for metabolic versatility could allow it to participate in the degradation of organic materials, thereby influencing nutrient cycling in its habitat. Further research into the specific metabolic pathways and ecological interactions of this strain could provide valuable insights into its functional role in microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia metallica Gram-negative rod aerobic non-spore-forming 488729 NZ_CP013401.1 Bac0016073 Burkholderia ubonensis strain MSMB0783 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 NZ_CP013420.1 Bac0016074 Burkholderia cepacia strain MSMB1184WGS "Burkholderia cepacia strain MSMB1184WGS is a Gram-negative, microaerophilic bacterium characterized by its ability to thrive in environments with limited oxygen availability. This strain belongs to the Burkholderia genus, which is known for its metabolic diversity and adaptability to various ecological niches. The microaerophilic nature of MSMB1184WGS suggests that it may play a role in specific environments where oxygen concentrations are lower than atmospheric levels, potentially influencing biogeochemical cycles in those habitats.↵↵The strain's Gram-negative status indicates that it possesses a distinctive cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can contribute to its resilience against certain antimicrobial agents. This structural feature is common among many bacteria in the Burkholderia genus, enabling them to inhabit diverse environments, from soil to plant rhizospheres.↵↵The ecological implications of Burkholderia cepacia strain MSMB1184WGS may extend to its interactions with other microorganisms, as its microaerophilic requirements could facilitate niche differentiation in microbial communities. This adaptability may allow MSMB1184WGS to engage in synergistic or competitive relationships with other species in oxygen-limited conditions, thereby shaping community dynamics and influencing nutrient cycling processes in its habitat." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 NZ_CP013442.1 Bac0016075 Burkholderia sp. MSMB617WGS Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. MSMB617WGS 1637831 NZ_CP013457.1 Bac0016076 Turicibacter sp. H121 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Turicibacteraceae Turicibacter Turicibacter sp. H121 1712675 NZ_CP013476.1 Bac0016077 Vibrio alginolyticus strain ATCC 33787 "Vibrio alginolyticus strain ATCC 33787 is a Gram-negative, facultative anaerobic bacterium that thrives in marine environments, with an optimal growth temperature of 30.0 °C. This strain is part of the Vibrio genus, which is known for its association with aquatic habitats, and it possesses the metabolic versatility characteristic of facultative anaerobes, allowing it to adapt to varying oxygen conditions. The ability to survive both in the presence and absence of oxygen enhances its ecological resilience in diverse marine ecosystems.↵↵The marine habitat of Vibrio alginolyticus strain ATCC 33787 suggests its potential role in biogeochemical cycles, particularly in nutrient cycling within coastal and estuarine environments. Its optimal growth temperature aligns with typical conditions found in tropical and subtropical waters, indicating its adaptation to warmer marine climates. Understanding the ecological contributions of this strain could provide insights into its interactions with other marine microorganisms and its role in the health of aquatic ecosystems. Overall, the traits of Vibrio alginolyticus strain ATCC 33787 highlight its ecological significance in marine microbiology and the potential for further studies on its physiological roles in marine habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus negative Yes facultative anaerobe 30 Marine 663 NZ_CP013485.1 Bac0016078 Rhizobium phaseoli strain N671 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium phaseoli 396 NZ_CP013577.1 Bac0016079 Pseudoalteromonas rubra strain SCSIO 6842 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas rubra 43658 NZ_CP013611.1 Bac0016080 Paenibacillus naphthalenovorans strain 32O-Y Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus naphthalenovorans 162209 NZ_CP013652.1 Bac0016081 Enterococcus rotai strain LMG 26678 "Enterococcus rotai strain LMG 26678 is a Gram-positive, ovoid-shaped bacterium that is characterized by its non-spore-forming nature and optimal growth temperature of 25.0°C. This strain belongs to the genus Enterococcus, which is commonly found in various environments, including the gastrointestinal tracts of animals and humans. ↵↵The Gram-positive nature of E. rotai indicates the presence of a thick peptidoglycan layer in its cell wall, a feature that is significant for its structural integrity and resistance to certain environmental stressors. The ovoid shape of this bacterium is typical within the Enterococcus genus, which generally exhibits a range of morphologies but is predominantly cocci or ovoid in form. ↵↵E. rotai strain LMG 26678's non-spore-forming characteristic suggests that it relies on alternative survival strategies in response to environmental challenges, as it does not produce spores as a means of enduring adverse conditions. The optimal growth temperature of 25.0°C indicates a preference for moderate temperatures, which may reflect its adaptation to specific ecological niches where temperatures are conducive to its proliferation.↵↵In summary, Enterococcus rotai strain LMG 26678 exemplifies the adaptability of bacteria within the Enterococcus genus to thrive in various environments, with traits that suggest a potential role in nutrient cycling or interactions within microbial communities. Further studies could elucidate its specific ecological functions and interactions in its native habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus rotai Gram-positive ovoid non-motile 25 mesophilic non-spore-forming 118060 NZ_CP013655.1 Bac0016082 Tenacibaculum dicentrarchi strain AY7486TD Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum dicentrarchi 669041 NZ_CP013671.1 Bac0016083 Myroides odoratimimus strain PR63039 "Myroides odoratimimus strain PR63039 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and demonstrates aerotolerant characteristics. This strain thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to warm environments, which may include various host-associated or anthropogenic habitats.↵↵As a chemoheterotroph, Myroides odoratimimus strain PR63039 relies on organic compounds as a source of carbon and energy, which is indicative of its ecological versatility. The ability to inhabit multiple environments underscores its potential role in diverse ecological niches, where it may participate in the breakdown of organic materials or contribute to microbial community dynamics.↵↵The aerotolerant nature of this strain indicates that it can survive in the presence of oxygen without necessarily requiring it for growth, allowing it to occupy a range of environments where oxygen levels fluctuate. This trait may also suggest a capability for metabolic flexibility, positioning Myroides odoratimimus strain PR63039 as a resilient organism in various ecological contexts.↵↵Overall, the combination of its physiological traits and metabolic capabilities implies that Myroides odoratimimus strain PR63039 could play a significant role in nutrient cycling within its habitats, contributing to the maintenance of microbial diversity and ecosystem functionality." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus Negative Rod No 1 Aerotolerant 37 Chemoheterotroph Mesophilic Multiple 76832 NZ_CP013690.1 Bac0016084 Clostridium sporogenes strain AM1195 "Clostridium sporogenes strain AM1195 is a Gram-positive, anaerobic bacterium predominantly found in a variety of habitats, including the caecum, colon, and intestines of animals, as well as in dairy products and cheese. This strain thrives in oxygen-depleted environments, which is characteristic of its anaerobic metabolism, allowing it to utilize fermentation pathways for energy production.↵↵The presence of C. sporogenes in diverse habitats such as pit mud and dairy products underscores its versatility and potential role in various ecological niches. In the gut, it may contribute to the complex microbiota, aiding in the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for host health. Additionally, its presence in cheese highlights its role in food fermentation processes, potentially influencing flavor and texture development.↵↵C. sporogenes strain AM1195 exemplifies the adaptability of anaerobic microbes to specific niches within both natural and human-modified environments. Its ability to thrive in the gut and dairy products suggests a broader ecological role in nutrient cycling and microbial community dynamics, where it may participate in the degradation of organic materials and contribute to the overall metabolic functions of the microbiome." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sporogenes Positive Anaerobe caecum; cheese; colon; dairy products; gut; intestine; pit mud 1509 NZ_CP013700.1 Bac0016085 Roseateles depolymerans strain KCTC 42856 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles depolymerans 76731 NZ_CP013729.1 Bac0016086 Burkholderia cepacia JBK9 "Burkholderia cepacia strain JBK9 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement, indicating that it thrives in environments with reduced levels of oxygen. This trait may enable B. cepacia JBK9 to inhabit specific ecological niches where oxygen concentration is limited, such as in waterlogged soils or within certain plant root systems. ↵↵As a member of the Burkholderia genus, B. cepacia is known for its metabolic versatility, which allows it to utilize a wide range of organic compounds as carbon sources. This metabolic flexibility may contribute to its survival in diverse environments, including those impacted by anthropogenic activity.↵↵The microaerophilic nature of B. cepacia JBK9 suggests that it could play a role in biogeochemical cycles, particularly in environments where oxygen levels fluctuate. This adaptation not only highlights its potential ecological significance but also raises questions about its interactions with other microorganisms in such microenvironments. Understanding the functional roles of B. cepacia JBK9 in microbial communities could provide insights into nutrient cycling and the resilience of ecosystems under varying oxygen conditions." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 1395570 NZ_CP013730.1 Bac0016087 Campylobacter coli strain OR12 "Campylobacter coli strain OR12 is a Gram-negative, microaerophilic bacterium that exhibits distinct physiological characteristics suitable for its ecological niche. This strain of Campylobacter coli is known for its adaptation to environments with reduced oxygen levels, which is a defining trait of microaerophilic organisms. Such conditions are typically found in the gastrointestinal tracts of various animals, where this bacterium may thrive and play a role in the complex microbial communities present.↵↵Gram-negative bacteria like C. coli possess a unique cell wall structure characterized by a thin peptidoglycan layer and an outer membrane, which contributes to their resilience in competitive environments. The microaerophilic nature of strain OR12 suggests that it requires specific atmospheric conditions for optimal growth, typically involving lower concentrations of oxygen than those found in the atmosphere. This may influence its metabolic pathways and interactions with other microorganisms within its habitat.↵↵Understanding the traits of Campylobacter coli strain OR12 can provide insights into its potential roles in the microbiomes of host organisms and its interactions with the environment. The microaerophilic adaptation of this strain likely reflects the ecological pressures present in its native habitat, allowing it to occupy a niche that is not favorable for strictly aerobic or anaerobic organisms. This specialization may have implications for its survival and ecological interactions, highlighting the intricate balance of microbial life within host ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 NZ_CP013733.1 Bac0016088 Herbaspirillum rubrisubalbicans M1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum rubrisubalbicans 1078773 NZ_CP013737.1 Bac0016089 Streptomyces sp. CdTB01 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CdTB01 1725411 NZ_CP013743.1 Bac0016090 Arthrobacter alpinus strain A3 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter alpinus 656366 NZ_CP013745.1 Bac0016091 Pseudarthrobacter sulfonivorans strain Ar51 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter sulfonivorans 121292 NZ_CP013747.1 Bac0016092 Lactiplantibacillus plantarum strain KP "Lactiplantibacillus plantarum strain KP is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits a facultative anaerobic metabolism. This strain has an optimal growth temperature of 25°C, suggesting a preference for moderate environmental conditions. L. plantarum is widely recognized for its adaptability, thriving in various habitats, which may include fermented foods and the gastrointestinal tracts of animals and humans.↵↵The facultative anaerobic nature of strain KP indicates its ability to grow in both the presence and absence of oxygen, a trait that enhances its survival in diverse environments. This flexibility in oxygen utilization is a key characteristic that allows Lactiplantibacillus species to inhabit various ecological niches, where they can play significant roles in fermentation processes and contribute to the microbiota of their hosts.↵↵Given its ability to form chains, L. plantarum strain KP may exhibit unique interactions with other microbial species in its habitat, potentially influencing community dynamics and metabolic pathways. Such interactions can be crucial for the maintenance of microbial balance and the overall health of the ecosystem in which it resides. Overall, the traits of L. plantarum strain KP highlight its ecological versatility and functional importance in both natural and engineered environments." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 NZ_CP013749.1 Bac0016093 Pasteurellaceae bacterium NI1060 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium NI1060 1679001 NZ_CP013830.1 Bac0016094 Pseudomonas fragi strain P121 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fragi 296 NZ_CP013861.1 Bac0016095 Deinococcus actinosclerus strain BM2 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus 1768108 NZ_CP013910.1 Bac0016096 Serratia fonticola strain GS2 "Serratia fonticola strain GS2 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe that utilizes a chemoheterotrophic metabolism. This strain has been isolated from various habitats, indicating its ecological versatility and adaptability to diverse environments. As a facultative anaerobe, Serratia fonticola strain GS2 can thrive in both aerobic and anaerobic conditions, allowing it to exploit a wide range of organic substrates for energy and growth.↵↵The chemoheterotrophic nature of this bacterium suggests that it relies on organic compounds for both energy and carbon, which could position it as an important player in nutrient cycling within its habitats. Given its ability to inhabit multiple environments, Serratia fonticola strain GS2 may contribute to microbial communities by facilitating the breakdown of organic matter, thereby influencing the ecological dynamics and nutrient availability in those settings. The versatility of Serratia fonticola strain GS2 highlights the intricate relationships between microorganisms and their environments, underscoring the potential for this strain to play a significant role in various ecological processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia fonticola Negative Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 47917 NZ_CP013913.1 Bac0016097 Bradyrhizobium sp. CCGE-LA001 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. CCGE-LA001 1223566 NZ_CP013949.1 Bac0016098 Bacillus sp. SDLI1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. SDLI1 1774743 NZ_CP013950.1 Bac0016099 Erwinia tracheiphila strain MDcuke Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia tracheiphila 65700 NZ_CP013971.1 Bac0016100 Aerococcus urinaeequi strain USDA-ARS-USMARC-56713 "Aerococcus urinaeequi strain USDA-ARS-USMARC-56713 is a Gram-positive, spherical bacterium that typically arranges itself in pairs. This strain is non-spore-forming and demonstrates an aerobic metabolism, indicating its requirement for oxygen during growth. It thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate warmth in its environment. ↵↵The spherical morphology and specific cell arrangement of this strain may influence its ecological interactions, particularly in niche environments where oxygen availability and temperature are conducive to its growth. Understanding the characteristics of Aerococcus urinaeequi, such as its aerobic nature and optimal growth conditions, can provide insights into its potential roles in various microbiological contexts, including environmental microbiology and microbial ecology. This strain's adaptation to specific temperature and oxygen levels could also hint at its ecological resilience and fitness in particular habitats." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus urinaeequi Gram-positive sphere non-motile aerobic 29 mesophilic Pairs non-spore-forming Animal 51665 NZ_CP013988.1 Bac0016101 Corynebacterium glutamicum strain USDA-ARS-USMARC-56828 "Corynebacterium glutamicum strain USDA-ARS-USMARC-56828 is a Gram-positive bacterium known for its role in amino acid production and potential applications in biotechnology. This strain exhibits characteristics typical of the Corynebacterium genus, including a rod-shaped morphology and a tendency to form club-shaped cells. ↵↵Corynebacterium glutamicum is notable for its ability to synthesize L-glutamate and other amino acids, making it an important organism in industrial microbiology. This metabolic capability is largely attributed to its well-characterized biosynthetic pathways, which have been extensively studied for their application in fermentation processes. Additionally, C. glutamicum is recognized for its resilience in various growth conditions, which may include varying pH levels and nutrient availability.↵↵The USDA-ARS-USMARC-56828 strain may have been selected for specific traits advantageous in biotechnological applications, though specific growth conditions or metabolic profiles for this strain are not detailed. Overall, the understanding of this strain contributes to the broader knowledge of amino acid-producing bacteria and emphasizes the potential of C. glutamicum in sustainable agricultural practices and bioprocessing. ↵↵While the ecological niche of C. glutamicum remains largely associated with soil and plant environments, the unique metabolic capabilities of strain USDA-ARS-USMARC-56828 could provide insights into its adaptability and role in nutrient cycling within these habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum positive 1718 NZ_CP013991.1 Bac0016102 Flavobacterium covae strain 94-081 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium covae 2906076 NZ_CP013992.1 Bac0016103 Serratia liquefaciens strain FDAARGOS_125 "Serratia liquefaciens strain FDAARGOS_125 is a Gram-negative bacterium that thrives in aerobic environments, primarily found in soil habitats. This strain exhibits the characteristic features of the Serratia genus, which is known for its metabolic versatility and ability to adapt to various ecological niches. The aerobic nature of Serratia liquefaciens suggests its reliance on oxygen for growth and energy production, enabling it to participate in soil biogeochemical processes.↵↵The presence of this strain in soil ecosystems could indicate its potential role in nutrient cycling, particularly in the decomposition of organic matter. As a member of the microbial community in soil, Serratia liquefaciens may contribute to the breakdown of complex organic compounds, thus facilitating the availability of nutrients for plants and other organisms within the ecosystem. The adaptability of Serratia liquefaciens strain FDAARGOS_125 to aerobic conditions highlights its potential significance in maintaining soil health and fertility. Further research into its specific metabolic pathways and interactions within soil microbiomes could provide deeper insights into its ecological role and contributions to soil dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia liquefaciens negative aerobic soil 614 NZ_CP014017.2 Bac0016104 Acinetobacter nosocomialis strain FDAARGOS_129 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter nosocomialis 106654 NZ_CP014019.1 Bac0016105 Vibrio fluvialis strain ATCC 33809 "Vibrio fluvialis strain ATCC 33809 is a Gram-negative bacterium that thrives in diverse aquatic environments, including coastal, estuarine, fresh, and marine habitats. This strain exhibits aerobic metabolism, indicating that it requires oxygen for growth and survival. ↵↵Vibrio fluvialis is characterized by its rod-shaped morphology, typical of the Vibrio genus, which is known for its distinctive curved shape. The species is part of a larger group of bacteria commonly associated with marine ecosystems, where it plays a role in the microbial community dynamics. Given its preference for aerobic conditions, V. fluvialis is likely to be found in surface waters and regions with adequate oxygen levels, potentially influencing nutrient cycling and organic matter decomposition in these environments.↵↵The ecological adaptability of V. fluvialis strain ATCC 33809 to various aquatic habitats suggests its potential involvement in the interactions between microbial communities and their environments. Its presence in estuarine and freshwater systems may also highlight its role in the transition zones between saline and freshwater ecosystems, where it could contribute to the overall microbial diversity and functional processes in these critical environments. Further studies may elucidate its specific interactions within these complex ecological networks." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio fluvialis Negative Yes Aerobe coastal environments; estuarine environments; Fresh water; Marine Animal; Human 676 NZ_CP014034.2 Bac0016106 Vibrio harveyi strain FDAARGOS_107 "Vibrio harveyi strain FDAARGOS_107 is a Gram-negative bacterium primarily found in marine environments, particularly within the aquaculture settings of the Changjiang estuary. This strain is part of the Vibrio genus, which is known for its diverse ecological roles and associations with aquatic organisms. The marine habitat of V. harveyi suggests its adaptation to saline conditions, potentially influencing its metabolic pathways and interactions with other microbial communities in estuarine ecosystems.↵↵As a member of the Vibrio genus, strain FDAARGOS_107 may possess the capacity for bioluminescence, although this trait is not explicitly confirmed in the current data set. Vibrio species, including V. harveyi, are recognized for their roles in the health and disease dynamics of marine organisms, particularly within cultured species in aquaculture. The presence of this strain in the Changjiang estuary highlights its potential significance in the microbial ecology of the region, possibly contributing to nutrient cycling and the overall health of aquatic ecosystems.↵↵Understanding the specific adaptations and interactions of V. harveyi strain FDAARGOS_107 can provide insights into the microbial dynamics in estuarine environments and assist in improving management practices in aquaculture, particularly in mitigating adverse microbial interactions. Further research into this strain could reveal its ecological roles and contributions to the aquatic food web." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi negative aquaculture; Changjiang estuary; Marine 669 NZ_CP014039.2 Bac0016107 Salmonella enterica strain FDAARGOS_94 "Salmonella enterica strain FDAARGOS_94 is a Gram-negative bacterium characterized by its spirilla shape and a tendency to form chains or exist as single cells. This strain thrives optimally at a temperature of 37.0°C, indicative of its adaptation to host-associated environments, which may include the gastrointestinal tracts of various animals. As a chemoorganotroph, Salmonella enterica strain FDAARGOS_94 derives its energy from organic compounds, which aligns with its habitat and lifestyle within host organisms.↵↵Additionally, this strain exhibits microaerophilic oxygen requirements, suggesting that it is adapted to environments with limited oxygen availability, a condition often found in certain tissues of infected hosts. The microaerophilic nature of this strain may influence its metabolic processes and pathogenic potential, allowing it to exploit specific niches within the host.↵↵Understanding the traits of Salmonella enterica strain FDAARGOS_94 not only provides insight into its biological capabilities but also highlights the potential for interactions within the host microbiome. Such interactions could influence nutrient availability and microbial dynamics, which are critical for comprehending the broader ecological impacts of this strain." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NZ_CP014050.2 Bac0016108 Vibrio alginolyticus strain FDAARGOS_108 "Vibrio alginolyticus strain FDAARGOS_108 is a Gram-negative, facultative anaerobic bacterium that thrives in marine environments, with an optimal growth temperature of 30.0°C. This strain is part of the Vibrio genus, known for its wide distribution in oceanic and estuarine waters. As a facultative anaerobe, V. alginolyticus can grow in both the presence and absence of oxygen, allowing it to occupy various niches within marine ecosystems. ↵↵The ability to adapt to fluctuating oxygen levels may confer a competitive advantage in diverse habitats, including coastal regions where oxygen availability can vary due to biological activity and environmental changes. Understanding the growth characteristics and ecological role of V. alginolyticus strain FDAARGOS_108 enhances our knowledge of microbial dynamics in marine environments, particularly in relation to nutrient cycling and interactions with other marine organisms. This strain exemplifies the adaptability of marine bacteria to their environments, highlighting the importance of temperature and oxygen availability in shaping microbial communities in aquatic systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus negative Yes facultative anaerobe 30 Marine 663 NZ_CP014054.1 Bac0016109 Achromobacter xylosoxidans strain FDAARGOS_147 "Achromobacter xylosoxidans strain FDAARGOS_147 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments and is classified as an aerobe, requiring oxygen for its growth and metabolic processes. This strain, belonging to the genus Achromobacter, is characterized by its adaptability to various niches, often found in association with living hosts, which may suggest a role in the microbiota of these organisms. ↵↵The aerobic nature of A. xylosoxidans allows it to utilize oxygen efficiently, potentially facilitating its survival in oxygen-rich environments. The Gram-negative cell wall structure typically confers resistance to certain antibiotics and environmental stresses, which may be advantageous in competitive microbial communities. ↵↵Given its association with hosts, A. xylosoxidans strain FDAARGOS_147 may play a role in complex interactions within microbial ecosystems, possibly influencing host physiology or competing with other microorganisms for resources. The precise ecological implications of this strain remain to be explored, but its presence in host-associated habitats highlights the potential for diverse functional roles, ranging from symbiotic relationships to responses to environmental changes. Further investigations into its metabolic capabilities and interactions within the host-associated microbiome could elucidate its biological significance in these ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter xylosoxidans Negative Rod Yes 1 1 Aerobe HostAssociated Free living 85698 NZ_CP014059.2 Bac0016110 Enterococcus gallinarum strain FDAARGOS_163 "Enterococcus gallinarum strain FDAARGOS_163 is a Gram-positive coccus that exhibits a facultative anaerobic metabolism. This strain is part of the Enterococcus genus, which is known for its resilience and adaptability in various environments. E. gallinarum, including strain FDAARGOS_163, is commonly found in the intestines of animals as well as in soil habitats, suggesting its role in the microbial ecology associated with both animal health and soil microbiomes.↵↵The coccal morphology of this strain contributes to its classification within the Enterococcus genus, which is characterized by its spherical-shaped cells. The facultative anaerobic nature of E. gallinarum indicates that it can thrive in both the presence and absence of oxygen, allowing it to occupy diverse ecological niches. This metabolic flexibility may play a significant role in its survival and function within the gut microbiota, where it could contribute to various biochemical processes, including fermentation and nutrient cycling.↵↵Understanding the traits of Enterococcus gallinarum strain FDAARGOS_163 provides insights into the ecological dynamics of gut and soil microbiomes. Its dual habitat preference highlights the potential for this strain to influence both gastrointestinal health in host organisms and soil fertility, thereby bridging terrestrial and microbiological ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gallinarum Positive Cocci Facultative anaerobe intestine; soil Animal 1353 NZ_CP014067.2 Bac0016111 Vibrio diabolicus strain FDAARGOS_99 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio diabolicus 50719 NZ_CP014133.1 Bac0016112 Brenneria goodwinii strain FRB141 "Brenneria goodwinii strain FRB141 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism. This microorganism is notable for its adaptability to varying oxygen conditions, allowing it to thrive in diverse environments where oxygen availability may fluctuate. The Gram-negative nature of Brenneria goodwinii strain FRB141 suggests the presence of an outer membrane composed of lipopolysaccharides, which may influence its interactions with other microbial species and its resistance to certain antimicrobial agents.↵↵The rod shape of this strain indicates a structural configuration that can impact its motility and colonization capabilities. As a facultative organism, Brenneria goodwinii strain FRB141 has the metabolic versatility to utilize both aerobic and anaerobic respiration, which could facilitate its survival in environments ranging from well-oxygenated soils to more anoxic conditions.↵↵Further investigations into this strain may reveal its role in specific ecological niches, particularly in environments where oxygen levels are variable. Such traits may also contribute to its interactions within microbial communities, potentially influencing nutrient cycling or symbiotic relationships. Understanding the ecological implications of Brenneria goodwinii strain FRB141's metabolic capabilities could provide insights into its functional role in its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria goodwinii Gram-negative rod facultative aerobe/anaerobe 1109412 NZ_CP014137.1 Bac0016113 Aneurinibacillus sp. XH2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Aneurinibacillus Aneurinibacillus sp. XH2 1450761 NZ_CP014140.1 Bac0016114 Microbulbifer aggregans strain CCB-MM1 "Microbulbifer aggregans strain CCB-MM1 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration, thriving optimally at a temperature of 29.0°C. This strain is a member of the genus Microbulbifer, which is typically associated with marine environments and is known for its ability to degrade complex organic substrates. ↵↵As a Gram-negative organism, M. aggregans CCB-MM1 possesses a thin peptidoglycan layer sandwiched between an inner and an outer membrane, which may contribute to its adaptability in various ecological niches, particularly in oxygen-rich environments. The rod shape of the bacterium may also play a role in its motility and interaction with substrates in marine ecosystems.↵↵The optimal growth temperature of 29.0°C suggests that this strain is well-suited for mesophilic conditions, potentially aligning with the typical thermal ranges found in coastal waters. The aerobic nature of M. aggregans strain CCB-MM1 indicates its reliance on oxygen for metabolic processes, which could influence its ecological interactions and the degradation of organic matter in its habitat.↵↵Overall, the traits of Microbulbifer aggregans strain CCB-MM1 highlight its potential role in nutrient cycling within marine environments, particularly in the breakdown of organic material, which is critical for maintaining ecosystem health and function. Further studies on its metabolic capabilities and ecological interactions could provide insights into its contributions to marine biogeochemistry." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer aggregans Gram-negative rod non-motile aerobic 29 mesophilic 1769779 NZ_CP014143.1 Bac0016115 Pseudomonas citronellolis strain P3B5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas citronellolis 53408 NZ_CP014158.1 Bac0016116 Aerococcus urinaehominis strain CCUG42038B "Aerococcus urinaehominis strain CCUG42038B is a Gram-positive, spherical bacterium that belongs to the genus Aerococcus. Notably, this strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for reproduction and survival. The spherical morphology of Aerococcus urinaehominis plays a significant role in its cellular interactions and potentially its ecological niches.↵↵Aerococcus species are generally found in various environments, including human-associated habitats, which raises interest in their ecological roles and interactions with other microorganisms. While specific pathogenicity or the ecological implications of strain CCUG42038B are not detailed in the provided traits, the presence of Gram-positive cocci in human-associated environments often indicates potential interactions with the host microbiome or involvement in biogeochemical cycles.↵↵The non-spore-forming characteristic of this strain further implies that Aerococcus urinaehominis may be sensitive to environmental stresses that typically favor sporulation in other microbial taxa. This trait may influence its survival strategies in fluctuating ecological conditions, highlighting the adaptive mechanisms bacteria employ in maintaining their populations in dynamic environments. Further studies could elucidate the ecological significance of this strain within the context of microbial community dynamics and its potential roles in human health or environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus urinaehominis Gram-positive sphere non-spore-forming 128944 NZ_CP014163.1 Bac0016117 Sphingomonas panacis strain DCY99 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 1560345 NZ_CP014168.1 Bac0016118 Isoptericola dokdonensis DS-3 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Isoptericola Isoptericola dokdonensis 1300344 NZ_CP014209.1 Bac0016119 Methanosphaera sp. BMS Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS 1789762 NZ_CP014213.1 Bac0016120 Methanogenic archaeon ISO4-H5 Methanobacteriati Thermoplasmatota Thermoplasmata methanogenic archaeon ISO4-H5 1495144 NZ_CP014214.1 Bac0016121 Janthinobacterium sp. B9-8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. B9-8 1236179 NZ_CP014222.1 Bac0016122 Wenyingzhuangia fucanilytica strain CZ1127 "Wenyingzhuangia fucanilytica strain CZ1127 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic growth pattern, thriving optimally at a temperature of 25.0°C. This strain is characterized by its distinct morphological and physiological traits which contribute to its classification within the broader spectrum of microbial diversity. ↵↵The Gram-negative nature of W. fucanilytica suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer specific advantages in terms of environmental resilience and interaction with other microbial species. Its rod shape is a common morphological feature among many bacterial taxa, influencing its motility and surface area-to-volume ratio, which can affect nutrient uptake and metabolic activity.↵↵The requirement for aerobic conditions indicates that W. fucanilytica is likely involved in processes that necessitate oxygen, potentially participating in the degradation of organic matter or contributing to biogeochemical cycles in its native habitat. The optimal growth temperature of 25.0°C suggests that this strain is well-suited to thrive in moderate environments, which may align with the ecological niches it occupies.↵↵Overall, the traits of Wenyingzhuangia fucanilytica strain CZ1127 not only highlight its physiological adaptability but also hint at its potential role in microbial communities, particularly in processes related to nutrient cycling in aerobic environments. Further research could elucidate the specific ecological functions and interactions of this strain within its habitat." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Wenyingzhuangia Wenyingzhuangia fucanilytica Gram-negative rod non-motile aerobic 25 mesophilic 1790137 NZ_CP014224.1 Bac0016123 Desulfovibrio fairfieldensis strain CCUG 45958 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio fairfieldensis 44742 NZ_CP014229.1 Bac0016124 Selenomonas sp. oral taxon 136 strain F0591 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 136 supragingival dental plaque 713030 NZ_CP014239.1 Bac0016125 Legionella pneumophila subsp. pascullei strain D-7119 "Legionella pneumophila subsp. pascullei strain D-7119 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, meaning it derives its energy from organic compounds, and it requires aerobic conditions for growth, indicating a dependence on oxygen for metabolic processes.↵↵The habitat of L. pneumophila subsp. pascullei strain D-7119 is primarily host-associated, suggesting an ecological niche that likely involves interactions with eukaryotic hosts, which may include protozoa and potentially mammals. This association could play a crucial role in its life cycle and survival, as the bacterium may exploit host cellular machinery for replication and nutrient acquisition.↵↵Given the bacterium's aerobic nature and its habitat preference, it may thrive in environments where organic material and oxygen are readily available, such as in biofilms or water systems associated with human activity. This specificity to host-associated environments may highlight the bacterium's adaptation mechanisms and underscore its significance in studies related to microbial ecology and potential implications for public health. Understanding these traits can provide insights into the ecological dynamics of Legionella species and their interactions with both biotic and abiotic components of their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 NZ_CP014257.1 Bac0016126 Agrobacterium tumefaciens strain S33 "Agrobacterium tumefaciens strain S33 is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats and exhibits aerobic metabolic activity. This strain has an optimal growth temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵As a member of the Agrobacterium genus, strain S33 is noteworthy for its capacity to interact with plant hosts, a trait often associated with this group, although the specific interactions and ecological roles of strain S33 in its natural environment remain to be fully elucidated. The ability to inhabit multiple environments suggests a versatile lifestyle that may enable it to adapt to diverse ecological niches. ↵↵Understanding the growth conditions and ecological preferences of Agrobacterium tumefaciens strain S33 could provide insights into its potential applications in bioremediation or agricultural biotechnology, particularly in plant-microbe interactions. Further research is warranted to explore the specific roles this strain may play in its habitats and its interactions with other microorganisms and plants, which could reveal novel ecological dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP014259.1 Bac0016127 Streptococcus sp. oral taxon 431 strain F0610 (5-114) Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. oral taxon 431 712633 NZ_CP014264.1 Bac0016128 Methanobrevibacter olleyae strain YLM1 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae 294671 NZ_CP014265.1 Bac0016129 Stenotrophomonas sp. KCTC 12332 strain YM1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. KCTC 12332 1793721 NZ_CP014274.1 Bac0016130 Bosea sp. PAMC 26642 strain PAMC26642 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. PAMC 26642 1792307 NZ_CP014301.1 Bac0016131 Hymenobacter sp. PAMC 26628 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. PAMC 26628 1484118 NZ_CP014303.1 Bac0016132 Streptococcus mitis strain SVGS_061 "Streptococcus mitis strain SVGS_061 is a Gram-positive, nonsporulating coccus that typically forms chains and pairs. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, which may enhance its adaptability in various host-associated habitats. This characteristic allows it to utilize different metabolic pathways depending on the availability of oxygen, potentially impacting its ecological interactions within the host.↵↵S. mitis is commonly found in human oral cavities and nasopharyngeal regions, suggesting a role in the normal microbiota. While its specific interactions and contributions to host health in the context of the SVGS_061 strain remain to be fully elucidated, the ability to persist in host-associated environments indicates a potential involvement in maintaining microbial balance or influencing host immune responses. Understanding the traits of S. mitis strain SVGS_061 may provide insights into its ecological significance in the human microbiome and its potential roles in health and disease dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 NZ_CP014326.1 Bac0016133 Weissella jogaejeotgali strain FOL01 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella jogaejeotgali 1631871 NZ_CP014332.1 Bac0016134 Geobacillus subterraneus strain KCTC3922(T) Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus subterraneus aerobic 129338 NZ_CP014342.1 Bac0016135 Pseudomonas putida strain 1A00316 "Pseudomonas putida strain 1A00316 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is nonsporulating. This strain is classified as a heterotroph, relying on organic compounds for energy, which aligns with its common habitats in soil and wastewater environments. The facultative nature of its oxygen requirement suggests that P. putida strain 1A00316 can metabolize in both aerobic and anaerobic conditions, providing it with a versatile adaptability to varying ecological niches.↵↵Pseudomonas putida strains are known for their potential in bioremediation processes due to their ability to degrade a wide range of environmental pollutants. The capacity of this strain to thrive in wastewater indicates that it may play a significant role in the microbial community involved in the treatment of contaminated water, helping to break down organic substances and contributing to nutrient cycling. Additionally, its presence in soil ecosystems further underscores its ecological importance, as it may participate in interactions with other microbial species and contribute to soil health and fertility. Overall, Pseudomonas putida strain 1A00316 exemplifies the adaptive features of soil-dwelling bacteria that facilitate their survival and functional roles in diverse environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP014343.1 Bac0016136 Mycoplasma mycoides subsp. mycoides strain T1/44 "Mycoplasma mycoides subsp. mycoides strain T1/44 is a Gram-negative bacterium notable for its unique lack of a cell wall, which is characteristic of the Mycoplasma genus. This strain belongs to a group of bacteria that are typically small in size and exhibit a highly reduced genome, reflecting their adaptation to parasitic lifestyles. Mycoplasma mycoides subsp. mycoides is primarily associated with ruminants and is known for its role in various infections in livestock, although specific pathogenic traits for strain T1/44 are not detailed in the provided data.↵↵The absence of a cell wall renders this strain inherently resistant to certain antibiotics that target cell wall synthesis, such as penicillins, thus complicating treatment strategies. This feature of Mycoplasma mycoides subsp. mycoides strain T1/44 facilitates its survival in host environments, where it can evade some aspects of the host immune response.↵↵In terms of ecological interactions, Mycoplasma species often inhabit mucosal surfaces of their hosts, establishing a niche that allows for close association with host tissues. The unique characteristics of strain T1/44 suggest it may play a role in the microbial dynamics of the host environment, potentially influencing both health and disease states in ruminants. Understanding the specific interactions and behaviors of this strain within its ecological context could provide insights into its role in host-microbe relationships and the broader implications for livestock health management." Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides negative 2102 NZ_CP014346.1 Bac0016137 Methylomonas sp. DH-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas sp. DH-1 1727196 NZ_CP014360.1 Bac0016138 Methylomonas denitrificans strain FJG1 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas denitrificans 1538553 NZ_CP014476.1 Bac0016139 Streptomyces albidoflavus strain SM254 "Streptomyces albidoflavus strain SM254 is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its prolific production of secondary metabolites and its ecological role in soil environments. This strain exhibits typical filamentous growth, characteristic of many species within the Streptomyces genus, which can contribute to its ability to decomposed organic matter and cycle nutrients in terrestrial ecosystems.↵↵The Gram-positive nature of S. albidoflavus strain SM254 indicates a thick peptidoglycan layer in its cell wall, which may provide it with resilience against environmental stressors. While the specifics of its metabolic capabilities and secondary metabolite production have not been detailed, members of the Streptomyces genus are renowned for their ability to produce a wide range of bioactive compounds, including antibiotics and antifungal agents. This trait highlights the potential of S. albidoflavus strain SM254 in biotechnological applications, particularly in pharmaceuticals and agriculture.↵↵An intriguing aspect of S. albidoflavus strain SM254's ecology is its role in soil health, where it may contribute to the suppression of plant pathogens through the production of antimicrobial substances. This ecological function underscores the significance of Streptomyces species, including strain SM254, in maintaining the balance of microbial communities and promoting plant growth in natural and agricultural systems." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 NZ_CP014485.1 Bac0016140 Variovorax sp. PAMC 28711 strain PAMC28711 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. PAMC 28711 1795631 NZ_CP014517.1 Bac0016141 Sinomonas atrocyanea strain KCTC 3377 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Sinomonas Sinomonas atrocyanea 37927 NZ_CP014518.1 Bac0016142 Haematospirillum jordaniae strain H5569 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Novispirillaceae Haematospirillum Haematospirillum jordaniae 1549855 NZ_CP014525.1 Bac0016143 Acinetobacter sp. DUT-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. DUT-2 1809055 NZ_CP014651.1 Bac0016144 Immundisolibacter cernigliae strain TR3.2 "Immundisolibacter cernigliae strain TR3.2 is a Gram-negative, ovoid-shaped bacterium that thrives in aerobic conditions and exhibits heterotrophic metabolism. This strain has an optimal growth temperature of 29.0°C, indicating its preference for moderately warm environments, which may align with specific ecological niches where temperature regulation plays a critical role in microbial community dynamics.↵↵As a heterotroph, I. cernigliae strain TR3.2 relies on organic compounds for energy, suggesting its potential involvement in nutrient cycling within its habitat. The ability to utilize a variety of organic substrates can influence the microbial community structure and contribute to the decomposition processes in its ecosystem. Given its aerobic nature, this microorganism may play a significant role in the breakdown of organic matter in oxygen-rich environments, such as soils or sediments with sufficient aeration.↵↵Further studies are warranted to elucidate the specific organic compounds utilized by this strain and its interactions with other microbial species. Understanding these interactions may provide valuable insights into the ecological roles of I. cernigliae strain TR3.2 in biogeochemical cycles and its potential contributions to maintaining ecosystem health and functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Immundisolibacterales Immundisolibacteraceae Immundisolibacter Immundisolibacter cernigliae Gram-negative ovoid non-motile aerobic 29 heterotroph mesophilic 1810504 NZ_CP014671.1 Bac0016145 Thermoclostridium stercorarium subsp. leptospartum DSM 9219 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Thermoclostridium Thermoclostridium stercorarium 1346611 NZ_CP014673.1 Bac0016146 Kozakia baliensis strain DSM 14400 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Kozakia Kozakia baliensis 153496 NZ_CP014674.1 Bac0016147 Acetobacter persici strain TMW2.1084 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter persici 1076596 NZ_CP014687.1 Bac0016148 Gluconobacter albidus strain TMW2.1191 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter albidus 318683 NZ_CP014690.1 Bac0016149 Streptococcus pantholopis strain TA 26 "Streptococcus pantholopis strain TA 26 is a Gram-positive, spherical bacterium exhibiting facultative aerobic and anaerobic growth capabilities. This strain is characterized by its non-spore-forming nature, which suggests that it may rely on alternative survival strategies, such as metabolic flexibility, to adapt to varying environmental conditions. The spherical shape of this microbe is typical of the Streptococcus genus, which often displays such morphology under microscopic examination.↵↵As a facultative aerobe/anaerobe, S. pantholopis strain TA 26 can thrive in both the presence and absence of oxygen, allowing it to occupy diverse ecological niches. This flexibility may enable the strain to exploit various substrates for growth, potentially contributing to its ecological role in different environments. The ability to utilize oxygen when available and switch to anaerobic respiration when necessary could confer a competitive advantage over strictly aerobic or anaerobic organisms in fluctuating environments.↵↵Overall, the traits of S. pantholopis strain TA 26 highlight its adaptability and resilience, suggesting that it may play a significant role in microbial communities where oxygen levels are variable, particularly in environments rich in organic matter. This adaptability may also facilitate interactions with other microbial species, contributing to the complexity and stability of microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pantholopis Gram-positive sphere non-motile facultative aerobe/anaerobe non-spore-forming 1811193 NZ_CP014699.1 Bac0016150 Geobacillus sp. JS12 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. JS12 1813182 NZ_CP014749.1 Bac0016151 Thermococcus peptonophilus strain OG-1 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus peptonophilus 53952 NZ_CP014750.1 Bac0016152 Hymenobacter psoromatis strain PAMC 26554 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter psoromatis 1484116 NZ_CP014769.1 Bac0016153 Mucilaginibacter sp. PAMC 26640 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp. PAMC 26640 1300914 NZ_CP014772.1 Bac0016154 Aeromonas veronii strain AVNIH1 "Aeromonas veronii strain AVNIH1 is a Gram-negative bacterium characterized by its rod-shaped morphology and tendency to occur in pairs or as single cells. This strain thrives in sediment environments, indicating its potential role in aquatic ecosystems. As an aerobic organism, A. veronii strain AVNIH1 requires oxygen for growth, which aligns with its habitat in sediment that may be subject to varying oxygen levels depending on the environment's characteristics.↵↵The sediment habitat suggests that A. veronii strain AVNIH1 may interact with various biogeochemical processes, possibly influencing nutrient cycling and organic matter decomposition. Its ability to thrive in such environments highlights its ecological significance, particularly in freshwater or estuarine systems where sediment-water interactions play a crucial role in the overall health and function of the ecosystem. Understanding the specific contributions of this strain to sedimentary environments could provide insights into microbial dynamics and the ecological roles of bacteria in nutrient cycling and sediment stabilization." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles Animal; Human 654 NZ_CP014774.1 Bac0016155 Shewanella psychrophila strain WP2 "Shewanella psychrophila strain WP2 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic and anaerobic metabolic capabilities, with an optimal growth temperature of 16.0 °C. This psychrophilic organism is adapted to thrive in cold environments, which may influence its enzymatic activities and metabolic pathways, making it particularly interesting for studies related to biogeochemical cycling in polar and deep-sea habitats. ↵↵As a facultative organism, Shewanella psychrophila strain WP2 can utilize both aerobic and anaerobic respiration mechanisms, allowing it to survive in fluctuating oxygen conditions. This flexibility may confer ecological advantages, enabling it to colonize diverse environments where oxygen availability varies, such as in marine sediments or cold, anoxic waters. The strain’s optimal growth temperature suggests it may play a significant role in the microbial communities of cold ecosystems, contributing to nutrient cycling and organic matter degradation in these niches. ↵↵Furthermore, the physiological traits of Shewanella psychrophila strain WP2 position it as a potential candidate for biotechnological applications, particularly in cold-adapted processes, including bioremediation and enzyme production under low-temperature conditions. Understanding the ecological roles of such psychrophilic bacteria can enhance our knowledge of microbial life in extreme environments and their contributions to ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella psychrophila Gram-negative rod facultative aerobe/anaerobe 16 psychrotolerant 225848 NZ_CP014782.1 Bac0016156 Lactobacillus oris strain J-1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus oris anaerobic oral cavity 1632 NZ_CP014788.1 Bac0016157 Salipiger profundus strain JLT2016 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger profundus 1229727 NZ_CP014796.1 Bac0016158 Rummeliibacillus stabekisii strain PP9 "Rummeliibacillus stabekisii strain PP9 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 29.0°C. This organism is strictly aerobic, indicating that it requires oxygen for its metabolic processes. The spore-forming ability suggests that strain PP9 has adaptations that allow it to survive in various environmental conditions, potentially enabling it to endure periods of nutrient limitation or unfavorable temperatures. ↵↵The morphology and physiological traits of R. stabekisii strain PP9 align it with other members of the Bacillus genus, known for their resilience and ability to form endospores. This trait is particularly significant for its survival strategies in diverse habitats. Given its optimal growth temperature, R. stabekisii strain PP9 may occupy niches that provide moderate thermal conditions, possibly contributing to nutrient cycling in its environment. The aerobic nature of this strain further suggests a role in organic matter decomposition where oxygen levels are sufficient, which could enhance its ecological significance in soil or aquatic ecosystems. Overall, Rummeliibacillus stabekisii strain PP9 exemplifies microbial adaptability through its physiological traits, positioning it as a potential player in ecological processes that rely on aerobic decomposition." Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Rummeliibacillus Rummeliibacillus stabekisii Gram-positive rod aerobic 29 mesophilic spore-forming 241244 NZ_CP014807.1 Bac0016159 Borrelia hermsii strain DAH-2E7 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia hermsii Yes 140 NZ_CP014811.1 Bac0016160 Dyella thiooxydans strain ATSB10 "Dyella thiooxydans strain ATSB10 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This strain, like others within the Dyella genus, is characterized by its unique metabolic capabilities, particularly in sulfur oxidation processes. The ability of Dyella thiooxydans to utilize sulfur compounds may contribute to its ecological roles in sulfur cycling, especially in environments where sulfur compounds are prevalent.↵↵The aerobic nature of this strain suggests its potential involvement in biogeochemical cycles, particularly in oxygen-rich environments. The optimal growth temperature of 29.0°C indicates that Dyella thiooxydans strain ATSB10 is well-suited for mesophilic conditions, which are common in various natural and anthropogenic habitats. ↵↵Understanding the metabolic processes and environmental preferences of Dyella thiooxydans strain ATSB10 can provide insights into its ecological role, particularly in the context of bioremediation strategies in sulfur-rich environments or in the development of sustainable biotechnological applications that harness its sulfur-oxidizing capabilities. The strain's adaptation to aerobic conditions further emphasizes its potential significance in maintaining ecological balance in oxygenated habitats where sulfur compounds are abundant." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella thiooxydans Gram-negative rod aerobic 29 mesophilic 445710 NZ_CP014841.1 Bac0016161 Cupriavidus nantongensis strain X1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus nantongensis 1796606 NZ_CP014844.1 Bac0016162 Thermococcus gorgonarius strain W-12 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus gorgonarius 71997 NZ_CP014855.1 Bac0016163 Actinoalloteichus hymeniacidonis strain HPA177 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinoalloteichus Actinoalloteichus hymeniacidonis 340345 NZ_CP014859.1 Bac0016164 Thermococcus profundus strain DT 5432 "Thermococcus profundus strain DT 5432 is a cocci-shaped archaeon known for its extreme thermophilic properties. This strain thrives in high-temperature environments, exhibiting optimal growth at elevated temperatures that characterize its natural habitats. While specific temperature ranges for growth are not detailed, members of the Thermococcus genus are generally adapted to conditions above 80°C, suggesting that strain DT 5432 shares similar thermal tolerances.↵↵As a member of the archaea domain, T. profundus strain DT 5432's unique structural traits contribute to its survival in extreme environments, which may include hydrothermal vents or geothermal springs. The coccoid morphology of this strain may enhance its stability and resilience against the harsh conditions often found in such niches, including high pressure and fluctuating chemical compositions.↵↵Furthermore, the metabolic pathways utilized by thermophilic archaea like T. profundus often involve anaerobic respiration, allowing them to utilize a variety of substrates for energy production in environments devoid of oxygen. The study of strain DT 5432 could provide valuable insights into the biogeochemical processes occurring in extreme habitats, as well as the potential applications of extremophiles in biotechnology, such as in the development of heat-stable enzymes for industrial processes. Understanding the capabilities of T. profundus strain DT 5432 will contribute to our knowledge of microbial life in extreme environments and the evolutionary adaptations that enable such organisms to thrive under conditions that would be inhospitable to most other forms of life." Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus profundus Cocci 49899 NZ_CP014863.1 Bac0016165 Microbulbifer thermotolerans strain DAU221 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer thermotolerans 252514 NZ_CP014864.1 Bac0016166 Loigolactobacillus backii strain TMW 1.1989 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus backii 375175 NZ_CP014873.1 Bac0016167 Secundilactobacillus paracollinoides strain TMW 1.1995 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Secundilactobacillus Secundilactobacillus paracollinoides 240427 NZ_CP014925.1 Bac0016168 Colwellia sp. PAMC 21821 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. PAMC 21821 1816219 NZ_CP014943.1 Bac0016169 Psychrobacter alimentarius strain PAMC 27889 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter alimentarius 261164 NZ_CP014945.1 Bac0016170 Enterobacter asburiae strain ENIPBJ-CG1 "Enterobacter asburiae strain ENIPBJ-CG1 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain has been isolated from wastewater environments, indicating its adaptation to nutrient-rich, organic-laden habitats typically found in sewage systems. The facultative anaerobic nature of E. asburiae ENIPBJ-CG1 suggests that it can thrive in both aerobic and anaerobic conditions, a trait that may enhance its survival and metabolic versatility in fluctuating environmental conditions.↵↵As a member of the Enterobacter genus, E. asburiae may play a role in the biogeochemical cycling of nutrients within wastewater ecosystems, potentially contributing to the breakdown of organic matter. Its rod shape and Gram-negative cell wall structure are characteristic of many bacteria in this genus, which are known for their diverse metabolic capabilities. ↵↵The presence of E. asburiae strain ENIPBJ-CG1 in wastewater highlights the importance of such microorganisms in bioremediation processes. They may facilitate the degradation of pollutants and organic materials, thus contributing to the maintenance of water quality in treatment systems. Further research on this strain could provide insights into its specific metabolic pathways and potential applications in waste management and environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter asburiae Negative Rod No Facultative anaerobe wastewater 61645 NZ_CP014993.1 Bac0016171 Aminobacter aminovorans strain KCTC 2477 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aminobacter Aminobacter aminovorans 83263 NZ_CP015006.1 Bac0016172 Escherichia coli strain 28RC1 "Escherichia coli strain 28RC1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the normal human body temperature, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 28RC1 can grow in both aerobic and anaerobic environments, allowing it to exploit a wide range of niches within the host. ↵↵The ability to alternate between aerobic respiration and fermentation is an important trait for survival in diverse environments, particularly within the gastrointestinal tract of mammals, where oxygen levels can fluctuate significantly. The specific ecological role of E. coli strain 28RC1 within its host environment may involve contributing to nutrient metabolism and maintaining gut homeostasis, although such roles must be further explored to fully understand the implications of its presence. The adaptability of this strain underscores the dynamic nature of microbial interactions in host-associated ecosystems, emphasizing the importance of studying individual strains to elucidate their potential contributions to host health and microbiome stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP015021.1 Bac0016173 Mesorhizobium ciceri strain CC1192 "Mesorhizobium ciceri strain CC1192 is a Gram-negative, nonsporulating bacterium classified as a chemoheterotroph, primarily residing in soil environments. This strain engages in symbiotic relationships with leguminous plants, particularly chickpeas, facilitating nitrogen fixation, which enhances soil fertility. The metabolic capability of Mesorhizobium ciceri strain CC1192 to utilize organic compounds as energy sources underscores its role in the soil microbiome, where it contributes to nutrient cycling and the ecological balance.↵↵Due to its nonsporulating nature, Mesorhizobium ciceri strain CC1192 relies on environmental conditions for survival and growth, demonstrating a need for stable habitats conducive to its life cycle. This trait may limit its resilience in extreme conditions, yet it fosters a dependence on plant hosts, which can provide a more stable microenvironment. The interaction between this strain and its legume partners is critical, not only for the host's growth but also for sustaining microbial diversity in soil ecosystems.↵↵Understanding the traits and ecological functions of Mesorhizobium ciceri strain CC1192 offers insights into its potential applications in sustainable agriculture, particularly in enhancing crop yields and reducing the need for synthetic fertilizers through natural nitrogen fixation processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium ciceri Negative Yes 1 Chemoheterotroph Mesophilic Soil Nonsporulating 39645 NZ_CP015063.1 Bac0016174 Escherichia coli O25b:H4 extrachromosomal. "Escherichia coli O25b:H4 extrachromosomal is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which coincides with the body temperature of many warm-blooded hosts, indicating its adaptation to host-associated environments. As a facultative anaerobe, E. coli O25b:H4 possesses the metabolic versatility to survive in both aerobic and anaerobic conditions, allowing it to colonize various niches within the host.↵↵This strain is notable for its extrachromosomal elements, which may contribute to its genetic diversity and adaptability. Such elements can harbor genes that confer beneficial traits, potentially influencing the bacterium's survival strategies within the host. The ability to thrive in diverse oxygen conditions, combined with its host-associated habitat, suggests that E. coli O25b:H4 may play significant roles in the microbiota of its host, potentially affecting metabolic processes and host health.↵↵The ecological role of E. coli O25b:H4 is underscored by its interaction with the host’s immune system and other microbial communities, which could influence overall gut health and disease states. Understanding the specific contributions of this strain to host-associated ecosystems may provide insights into microbial dynamics and the maintenance of homeostasis within the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 NZ_CP015087.1 Bac0016175 Salipiger abyssi strain JLT2014 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger abyssi 1250539 NZ_CP015090.1 Bac0016176 Streptomyces qaidamensis strain S10 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces qaidamensis 1783515 NZ_CP015098.1 Bac0016177 Glaesserella parasuis strain SC1401 "Glaesserella parasuis strain SC1401 is a Gram-negative, rod-shaped bacterium that is primarily host-associated, exhibiting both aerobic and facultative anaerobic growth capabilities. This microbe is part of the normal flora found in the respiratory tract of swine, indicating its adaptation to a specific host environment. ↵↵G. parasuis is known to thrive in variable oxygen conditions, which may facilitate its survival in diverse niches within its host. The strain's capacity to function as a facultative anaerobe suggests a metabolic versatility that allows it to adapt to fluctuating oxygen levels in the host environment, potentially influencing its interactions with the host immune system.↵↵Understanding the ecological role of Glaesserella parasuis strain SC1401 within the porcine respiratory microbiome may provide insights into its contributions to host health and disease dynamics. The presence of this bacterium in the respiratory tract highlights the complex microbial ecosystems associated with swine, where it may play a role in maintaining respiratory health under normal conditions while potentially being involved in disease processes under specific circumstances. Further investigation into its interactions with other microbial species in the host may reveal additional layers of ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living Animal 738 NZ_CP015099.1 Bac0016178 Thermococcus barossii strain SHCK-94 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus barossii 54077 NZ_CP015101.1 Bac0016179 Thermococcus pacificus strain P-4 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus pacificus 71998 NZ_CP015102.1 Bac0016180 Thermococcus siculi strain RG-20 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus siculi 72803 NZ_CP015103.1 Bac0016181 Thermococcus thioreducens strain OGL-20P Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus thioreducens 277988 NZ_CP015105.1 Bac0016182 Thermococcus radiotolerans strain EJ2 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus radiotolerans 187880 NZ_CP015106.1 Bac0016183 Piscinibacter gummiphilus strain NS21 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Piscinibacter Piscinibacter gummiphilus 946333 NZ_CP015118.1 Bac0016184 Acinetobacter pittii strain IEC338SC "Acinetobacter pittii strain IEC338SC is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotrophic aerobe, indicating that it derives energy from organic compounds and requires oxygen for growth. Its optimal growth temperature is 37.0°C, which aligns with the typical physiological conditions found in human-associated environments. ↵↵Acinetobacter species, including A. pittii, are known to inhabit a variety of habitats, further emphasizing their ecological versatility. The ability to thrive in diverse environments may contribute to the organism's adaptability and potential resilience against environmental stresses. This generalist lifestyle could also facilitate its interactions with other microbial communities, potentially influencing nutrient cycling and biogeochemical processes in its habitats.↵↵In summary, A. pittii strain IEC338SC exemplifies the characteristics of a heterotrophic aerobe well-adapted to various environments, reflecting its ecological plasticity and highlighting its role within microbial ecosystems. Further research could elucidate its interactions with other microorganisms and its specific contributions to ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 NZ_CP015145.1 Bac0016185 Acetobacter ascendens strain LMG 1590 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter ascendens 481146 NZ_CP015164.1 Bac0016186 Chryseobacterium glaciei strain IHBB 10212 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium glaciei 1685010 NZ_CP015199.1 Bac0016187 Candidatus Rhodoluna planktonica strain MWH-Dar1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Candidatus Rhodoluna planktonica 535712 NZ_CP015208.1 Bac0016188 Leptospira tipperaryensis strain GWTS#1 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira tipperaryensis 2564040 NZ_CP015218.1 Bac0016189 Rhodococcus sp. PBTS 1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. PBTS 1 1653478 NZ_CP015219.1 Bac0016190 Rhodococcoides fascians strain PBTS 2 "Rhodococcoides fascians strain PBTS 2 is a Gram-positive bacterium characterized by its cocci shape. This strain exhibits typical features associated with the genus Rhodococcoides, which is notable for its distinct morphology and cellular characteristics. As a member of the Actinobacteria phylum, R. fascians strain PBTS 2 is likely to possess a complex cell wall structure, a hallmark of Gram-positive organisms that contributes to its resilience in various environments.↵↵While specific metabolic capabilities and ecological niches are not detailed in the provided traits, the genus Rhodococcoides is often associated with soil environments and the degradation of organic compounds. This suggests that strain PBTS 2 may play a role in nutrient cycling and the breakdown of complex organic materials in its habitat. The Gram-positive nature of the strain may also indicate potential interactions with other microbial communities, possibly influencing soil health and fertility.↵↵In summary, Rhodococcoides fascians strain PBTS 2 represents a unique member of the microbial community, with its cocci morphology and Gram-positive characteristics potentially contributing to ecological functions such as organic matter decomposition and soil nutrient dynamics. Understanding the specific role of this strain within its environment could provide valuable insights into the ecological interactions and functions of bacterial communities in terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcoides Rhodococcoides fascians positive Cocci 1828 NZ_CP015220.1 Bac0016191 Pseudomonas fluorescens strain FW300-N2E2 "Pseudomonas fluorescens strain FW300-N2E2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, and it thrives optimally at a temperature of 25.0°C. Pseudomonas fluorescens is primarily recognized for its versatility in various habitats, indicating a broad ecological adaptability. ↵↵As an aerobic organism, strain FW300-N2E2 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability varies. The ability to thrive in multiple habitats suggests that this strain may play a role in diverse ecological interactions, potentially contributing to nutrient cycling and organic matter decomposition.↵↵Given these traits, Pseudomonas fluorescens strain FW300-N2E2 exemplifies the adaptability and ecological significance of microorganisms in different environments, particularly in their capacity to utilize a range of organic materials under aerobic conditions. This adaptability may enhance its role in bioremediation or soil health, as it can interact with various organic substrates, promoting ecological balance in its native habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_CP015225.1 Bac0016192 Dokdonella koreensis DS-123 "Dokdonella koreensis DS-123 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This microbial species thrives optimally at a temperature of 29.0°C, indicating a preference for moderate thermal conditions that may reflect its natural habitat. ↵↵The Gram-negative nature of D. koreensis DS-123 suggests the presence of a characteristic outer membrane, which may contribute to its resilience in various environments, although specific ecological roles remain to be elucidated. The rod shape could facilitate mobility and nutrient uptake, potentially allowing this microbe to exploit diverse ecological niches.↵↵Given its aerobic requirement, D. koreensis DS-123 likely plays a role in the carbon cycle, as aerobic bacteria are known to participate in the decomposition of organic matter and the processing of oxygen in their ecosystems. Further research may reveal its interactions within microbial communities and its potential contributions to biogeochemical processes, particularly in environments where organic matter is abundant and oxygen is available. Understanding these dynamics can provide insights into the ecological significance of D. koreensis DS-123 and its potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dokdonella Dokdonella koreensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 1300342 NZ_CP015249.1 Bac0016193 Mycobacterium intracellulare subsp. chimaera strain ZUERICH-1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 222805 NZ_CP015272.1 Bac0016194 Streptococcus salivarius strain ATCC 25975 "Streptococcus salivarius strain ATCC 25975 is a Gram-positive coccus that typically forms chains or pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. As a host-associated microbe, S. salivarius strain ATCC 25975 is primarily found in the human oral cavity, where it plays a role in the complex microbial community of the mouth.↵↵The presence of this strain in the oral microbiome suggests its potential involvement in maintaining oral health, as it may contribute to the balance of microbial populations and inhibit the growth of pathogenic bacteria. The facultative anaerobic nature of S. salivarius allows it to adapt to different environments within the oral cavity, which can vary in oxygen levels due to factors such as saliva flow and the presence of food. ↵↵Given its unique traits, S. salivarius strain ATCC 25975 may also have implications for oral hygiene and the development of probiotics aimed at promoting oral health. Further research could elucidate its specific interactions within the oral microbiome and its potential benefits in preventing dental diseases, highlighting the importance of this strain in both ecological and clinical contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 NZ_CP015283.1 Bac0016195 Azospirillum humicireducens strain SgZ-5 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum humicireducens 1226968 NZ_CP015285.1 Bac0016196 Bacillus thuringiensis strain MYBT18246 "Bacillus thuringiensis strain MYBT18246 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and thrives in a host-associated habitat, functioning as a facultative anaerobe. This strain is part of the Bacillus genus, known for its ability to produce crystal proteins that have insecticidal properties, although specific applications and effects of MYBT18246 are not detailed here.↵↵The facultative anaerobic nature of Bacillus thuringiensis strain MYBT18246 allows it to adapt to varying oxygen levels, which is advantageous in diverse environmental conditions and host interactions. The ability to form spores contributes to its resilience, permitting survival in unfavorable conditions until suitable environments are encountered for growth and reproduction.↵↵The ecological role of Bacillus thuringiensis strain MYBT18246 may include interactions with specific hosts, potentially influencing microbial communities or serving as a biocontrol agent against certain pests. The strain's capacity to thrive in host-associated environments suggests a potential involvement in mutualistic or antagonistic relationships within its ecological niche. Understanding the specific interactions and effects of this strain on its environment could offer insights into its potential uses in sustainable agricultural practices or integrated pest management strategies." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP015352.1 Bac0016197 Streptomyces sp. S8 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. S8 1837283 NZ_CP015362.1 Bac0016198 Fictibacillus phosphorivorans strain G25-29 Bacillati Bacillota Bacilli Caryophanales Fictibacillaceae Fictibacillus Fictibacillus phosphorivorans 1221500 NZ_CP015378.1 Bac0016199 Lachnoclostridium sp. YL32 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium sp. YL32 1834196 NZ_CP015399.2 Bac0016200 Hungateiclostridiaceae bacterium KB18 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Hungateiclostridiaceae bacterium KB18 1834198 NZ_CP015400.2 Bac0016201 Bacteroides caecimuris strain I48 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caecimuris 1796613 NZ_CP015401.2 Bac0016202 Burkholderiales bacterium YL45 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiales bacterium YL45 1834205 NZ_CP015403.2 Bac0016203 Erysipelotrichaceae bacterium I46 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium I46 1834207 NZ_CP015404.2 Bac0016204 Blautia pseudococcoides strain YL58 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia pseudococcoides 1796616 NZ_CP015405.2 Bac0016205 Flavonifractor plautii strain YL31 "Flavonifractor plautii strain YL31 is a Gram-positive, facultative anaerobic bacterium that is part of the human gut microbiota. This strain is characterized by its capacity to thrive in varying oxygen conditions, which enables it to adapt to the dynamic environment of the gastrointestinal tract. F. plautii is known to contribute to the complex microbial community within the gut, where it may play a role in the fermentation of dietary fibers, thereby influencing gut health and metabolism.↵↵The presence of Flavonifractor plautii in the human gut suggests its potential involvement in various microbial interactions, which can affect nutrient absorption and overall digestive health. Its ability to grow in both aerobic and anaerobic conditions allows it to exploit different niches within the gut ecosystem, potentially impacting the balance of microbial populations and metabolic activities. This adaptability may provide insights into its role in maintaining gut homeostasis or its contribution to metabolic processes such as short-chain fatty acid production, which is essential for colonic health. Understanding the specific functions and interactions of strain YL31 within the gut microbiota could offer valuable perspectives on its significance in human health and disease management." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Flavonifractor Flavonifractor plautii Positive Facultative anaerobe human gut microbiota 292800 NZ_CP015406.2 Bac0016206 Limosilactobacillus reuteri strain I49 "Limosilactobacillus reuteri strain I49 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This strain is capable of thriving in multiple habitats, indicating its ecological versatility. The facultative anaerobic nature of L. reuteri I49 allows it to adapt to varying oxygen levels, which is advantageous in diverse environments where oxygen availability may fluctuate.↵↵As a member of the Lactobacillus genus, L. reuteri has been studied for its potential benefits in fermentation processes and its role in gut microbiota. The ability to grow in chains may facilitate interactions with other microbial species, contributing to complex community dynamics in its native habitats. Moreover, the presence of this strain in multiple environments suggests a broad ecological niche, which could include both plant-associated and animal-associated ecosystems.↵↵Overall, the adaptability of Limosilactobacillus reuteri strain I49 to different oxygen conditions and its chain-forming characteristic may play a significant role in its ecological interactions and functionality within microbial communities, potentially influencing nutrient cycling and the stability of the microbiome where it resides." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 NZ_CP015408.2 Bac0016207 Paenibacillus polymyxa strain J "Paenibacillus polymyxa strain J is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive as a chemoheterotroph. This strain exhibits optimal growth at a temperature of 37.0°C and demonstrates facultative anaerobic respiration, allowing it to adapt to varying oxygen levels in its environment. ↵↵The capability to sporulate is significant for survival, enabling the bacterium to endure unfavorable conditions by forming resilient spores. As a chemoheterotroph, P. polymyxa strain J relies on organic compounds for energy and carbon, which highlights its role in nutrient cycling within diverse habitats. The organism's versatility in energy utilization and oxygen dependence indicates its potential presence in a range of environments, from soil to more complex ecosystems.↵↵Understanding the physiological traits of P. polymyxa strain J not only sheds light on its metabolic capabilities but also emphasizes its ecological role in soil health and plant interactions. Its ability to adapt to different habitats and conditions suggests that this bacterium may contribute to biogeochemical processes, particularly in the degradation of organic materials and the promotion of soil fertility. Such traits position P. polymyxa strain J as a potential candidate for applications in agriculture and bioremediation, where its metabolic versatility could be harnessed for enhancing soil quality and ecosystem resilience." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa Positive Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 1406 NZ_CP015423.1 Bac0016208 Anoxybacillus amylolyticus strain DSM 15939 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacteroides Anoxybacteroides amylolyticum 294699 NZ_CP015438.1 Bac0016209 Dietzia lutea strain YIM 80766 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia lutea 546160 NZ_CP015450.1 Bac0016210 Brevundimonas sp. GW460-12-10-14-LB2 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. GW460-12-10-14-LB2 1827469 NZ_CP015511.1 Bac0016211 Vibrio vulnificus strain FORC_036 "Vibrio vulnificus strain FORC_036 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives in aquatic environments, suggesting an adaptation to marine or estuarine ecosystems. As a heterotrophic organism, V. vulnificus strain FORC_036 relies on organic compounds as its energy source, which aligns with its ecological niche where organic matter is abundant.↵↵The optimal growth temperature for this strain is 20.0°C, indicating a preference for cooler aquatic environments, which may influence its distribution and interactions within marine food webs. Additionally, being a facultative anaerobe allows V. vulnificus strain FORC_036 to survive in both oxygen-rich and oxygen-poor conditions, providing it with a competitive advantage in varied aquatic habitats.↵↵Understanding the traits of V. vulnificus strain FORC_036 contributes to our knowledge of microbial diversity in aquatic ecosystems and highlights the ecological roles that such organisms play in nutrient cycling and organic matter decomposition. The ability of this strain to thrive under varying oxygen levels suggests potential adaptability to changing environmental conditions, which may have implications for ecosystem dynamics and microbial community structure in its natural habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 672 NZ_CP015513.1 Bac0016212 Rathayibacter tritici strain NCPPB 1953 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter tritici 33888 NZ_CP015515.1 Bac0016213 Syntrophotalea acetylenivorans strain SFB93 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea acetylenivorans 1842532 NZ_CP015519.1 Bac0016214 Thermococcus piezophilus strain CDGS Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus piezophilus 1712654 NZ_CP015520.1 Bac0016215 Streptococcus suis strain DN13 "Streptococcus suis strain DN13 is a Gram-positive coccus that commonly arranges itself in chains, pairs, or as single cells. This bacterium thrives optimally at a temperature of 37.0°C, indicating its adaptation to a host-associated environment. As a facultative anaerobe, S. suis strain DN13 can grow in both aerobic and anaerobic conditions, which may enhance its survival in various microenvironments within its specialized habitat. ↵↵S. suis is known to inhabit the respiratory tracts of pigs, where it can exist as part of the normal microbiota. The strain DN13 likely reflects the ecological niches and interactions typical of this species, although specific pathogenic characteristics or broader ecological roles are not detailed in the provided traits. The ability to form chains and pairs may facilitate its colonization and persistence within the host by enhancing the formation of biofilms or increasing cell-to-cell communication.↵↵Overall, the traits of Streptococcus suis strain DN13 underscore its potential for adaptation to fluctuating environmental conditions within its specialized habitat, suggesting a complex interplay between its physiological characteristics and host interactions. Further research into the ecological roles and interactions of this strain could provide deeper insights into its behavior in natural settings." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP015557.1 Bac0016216 Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260 "Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260 is a Gram-negative bacterium characterized by its distinctive spiral shape and motility, which is facilitated by a single polar flagellum. This subspecies is part of the Campylobacter genus, which is known for its microaerophilic lifestyle, requiring reduced oxygen levels for optimal growth. Typically, Campylobacter species are associated with gastrointestinal environments, where they thrive in the presence of various organic compounds.↵↵As a member of the Campylobacteraceae family, C. hyointestinalis subsp. hyointestinalis exhibits metabolic versatility, enabling it to utilize a range of substrates for energy production. This metabolic adaptability may provide advantages in fluctuating environmental conditions, particularly in the gastrointestinal tracts of animals where it may be found.↵↵In terms of morphological characteristics, the bacterium's spiral shape and motility are essential for colonization and movement through viscous environments, potentially enhancing its survival and persistence in the gut. The microaerophilic requirement suggests that C. hyointestinalis subsp. hyointestinalis may occupy niches where oxygen levels are lower than atmospheric levels, aligning with the conditions typically found in the intestines of various hosts.↵↵Given its adaptation to low-oxygen environments and motility, C. hyointestinalis subsp. hyointestinalis may play a role in the complex microbial communities of the gastrointestinal tract, contributing to the dynamics of microbial interactions and nutrient cycling within these ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis Negative 1031746 NZ_CP015575.1 Bac0016217 Campylobacter hyointestinalis subsp. lawsonii CCUG 27631 "Campylobacter hyointestinalis subsp. lawsonii CCUG 27631 is a Gram-negative bacterium characterized by its spiral shape and motility, which is facilitated by a single polar flagellum. This subspecies is part of the Campylobacter genus, which is known for its microaerophilic growth requirements, typically thriving in environments with reduced oxygen levels. The strain CCUG 27631 is recognized for its ability to grow optimally at temperatures around 42°C, which is indicative of its adaptation to warm-blooded hosts. ↵↵As a member of the Campylobacter genus, C. hyointestinalis subsp. lawsonii is often associated with the gastrointestinal tract of animals, particularly in pigs, where it may play a role in the microbiota composition. Its presence in the intestines suggests a potential contribution to the digestive processes of its hosts. However, the specific ecological roles or implications of C. hyointestinalis subsp. lawsonii CCUG 27631 within its habitat remain to be fully elucidated.↵↵In conclusion, the unique combination of its Gram-negative nature, motility, microaerophilic growth, and temperature preference highlights the adaptability of C. hyointestinalis subsp. lawsonii CCUG 27631 to specific environmental niches, underscoring the intricate relationships that exist within host-associated microbiomes. Further research may illuminate its interactions with other microbial species and its overall impact on host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hyointestinalis Negative 1031752 NZ_CP015576.1 Bac0016218 Tatumella citrea strain DSM 13699 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Tatumella Tatumella citrea 53336 NZ_CP015579.1 Bac0016219 Roseomonas gilardii strain U14-5 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Roseomonas gilardii 257708 NZ_CP015583.1 Bac0016220 Mycobacterium adipatum strain YC-RL4 "Mycobacterium adipatum strain YC-RL4 is a Gram-positive, rod-shaped bacterium that exhibits optimal growth at a temperature of 28.0°C. This strain has been isolated from petroleum-contaminated soils, indicating its potential role in environments heavily impacted by hydrocarbon pollution. ↵↵The Gram-positive nature of M. adipatum strain YC-RL4 suggests a thick peptidoglycan layer in its cell wall, which is characteristic of the Mycobacterium genus. This structural feature may confer certain advantages in survival within harsh environments, such as those contaminated with petroleum, where other microorganisms may struggle. ↵↵The habitat of M. adipatum strain YC-RL4 highlights its potential utility in bioremediation processes, where microbial metabolism can be harnessed to degrade pollutants. The presence of this strain in petroleum-contaminated soils suggests that it may possess specific enzymatic pathways or metabolic strategies that allow it to utilize components of petroleum as carbon and energy sources. ↵↵Overall, the isolation of Mycobacterium adipatum strain YC-RL4 from such contaminated environments underscores its potential significance in microbial ecology and bioremediation applications, as it may play a crucial role in the natural attenuation of petroleum hydrocarbons in polluted soils." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium adipatum positive Rod 28 petroleum-contaminated soil; petroleum-contaminated soils 1682113 NZ_CP015596.1 Bac0016221 Pseudomonas antarctica strain PAMC 27494 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas antarctica 219572 NZ_CP015600.1 Bac0016222 Bacillus safensis strain U14-5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus safensis assembly site of the Phoenix spacecraft 561879 NZ_CP015608.1 Bac0016223 Serratia inhibens PRI-2C Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia inhibens 1154756 NZ_CP015613.1 Bac0016224 Acinetobacter schindleri strain ACE "Acinetobacter schindleri strain ACE is a Gram-negative bacterium that primarily inhabits the rhizomes of various plants. This strain is part of the Acinetobacter genus, which is recognized for its adaptability to diverse environments, including those associated with plant roots. The presence of A. schindleri in rhizomes suggests a potential role in plant-microbe interactions, possibly influencing nutrient cycling or plant health.↵↵As a Gram-negative organism, A. schindleri possesses a characteristic outer membrane structure that may confer resistance to certain environmental stresses and antibiotics. This trait can be of particular importance in the context of its habitat, where interactions with other microorganisms and environmental factors can shape its survival and functional roles.↵↵The specific ecological contributions of A. schindleri strain ACE are yet to be fully elucidated; however, its association with rhizomes indicates a potential involvement in symbiotic relationships with plant hosts. Such associations could be pivotal for understanding the dynamics of microbial communities in soil and their effects on plant development. Further research into this strain may reveal insights into its metabolic capabilities and interactions within the rhizosphere, providing a deeper understanding of its ecological significance in terrestrial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter schindleri negative rhizomes 108981 NZ_CP015616.1 Bac0016225 Corynebacterium crudilactis strain JZ16 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium crudilactis 1652495 NZ_CP015623.1 Bac0016226 Borrelia turicatae strain BTE5EL Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia turicatae 142 NZ_CP015629.1 Bac0016227 Pectobacterium wasabiae CFBP 3304 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium wasabiae 1175631 NZ_CP015750.1 Bac0016228 Clostridium estertheticum subsp. estertheticum strain DSM 8809 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium estertheticum anaerobic 238834 NZ_CP015757.1 Bac0016229 Lelliottia amnigena strain ZB04 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Lelliottia Lelliottia amnigena aerobic / microaerophile rhizomes 61646 NZ_CP015774.2 Bac0016230 Brucella pseudogrignonensis strain K8 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella pseudogrignonensis 419475 NZ_CP015775.1 Bac0016231 Borreliella mayonii strain MN14-1539 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella mayonii 1674146 NZ_CP015796.1 Bac0016232 Bartonella apihabitans strain BBC0178 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Ditibartonella Ditibartonella apihabitans 2750929 NZ_CP015820.1 Bac0016233 Escherichia coli strain MS6198 "Escherichia coli strain MS6198 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of mammals, suggesting a close association with host organisms. As a facultative anaerobe, E. coli strain MS6198 is capable of growth in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its host habitat.↵↵The habitat of E. coli strain MS6198 is primarily host-associated, indicating that it may reside in the gastrointestinal tract of mammals, where it can play a role in nutrient processing and microbial balance. While the precise ecological role of this specific strain has not been delineated, E. coli strains are generally known for their involvement in gut microbiota, contributing to digestion and the synthesis of essential vitamins. The facultative anaerobic nature of this strain allows it to occupy diverse niches within the host, further emphasizing its adaptability and potential significance in maintaining host health.↵↵Understanding the characteristics of E. coli strain MS6198 may provide insights into its interactions within the host environment, highlighting its potential roles in symbiotic relationships or microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP015834.1 Bac0016234 Magnetospirillum sp. ME-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum sp. ME-1 1639348 NZ_CP015848.1 Bac0016235 Pseudomonas citronellolis strain SJTE-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas citronellolis 53408 NZ_CP015878.1 Bac0016236 Lactococcus lactis subsp. lactis strain 275 "Lactococcus lactis subsp. lactis strain 275 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 40.0°C. This strain is categorized as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which may enhance its adaptability to diverse environmental niches. ↵↵Lactococcus lactis subsp. lactis strain 275 is commonly found in various habitats, including dairy environments, where it plays a significant role in fermentation processes, contributing to the production of cheese and other fermented dairy products. The strain's nonsporulating nature suggests that it relies on vegetative growth rather than sporulation for reproduction and survival, which is a characteristic feature of many lactic acid bacteria.↵↵The ability of this strain to thrive at elevated temperatures may provide an advantage in specific industrial applications where higher fermentation temperatures are beneficial. Moreover, its facultative anaerobic metabolism allows it to utilize a range of substrates, potentially influencing the flavor and texture of the fermented products it is involved in. ↵↵Overall, Lactococcus lactis subsp. lactis strain 275 exemplifies the adaptability and utility of lactic acid bacteria in food production, particularly in environments that may fluctuate between aerobic and anaerobic conditions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP015897.1 Bac0016237 Lactococcus lactis subsp. lactis strain UC11 "Lactococcus lactis subsp. lactis strain UC11 is a Gram-positive, nonsporulating coccus that demonstrates facultative anaerobic metabolism and thrives at an optimal temperature of 40.0°C. This strain is a member of the Lactococcus genus, which is commonly associated with dairy fermentation processes, where it plays a crucial role in the production of various fermented dairy products. ↵↵The coccus shape of L. lactis subsp. lactis UC11 contributes to its characteristic morphology, which can be observed under a microscope following Gram staining. The facultative anaerobic nature of this strain allows it to adapt to varying oxygen levels, making it versatile in diverse habitats, likely including dairy environments and other fermentation settings. ↵↵Given its nonsporulating trait, L. lactis subsp. lactis UC11 relies on vegetative growth and metabolic processes for survival and proliferation. This feature emphasizes its role in continuous fermentation processes, as it can readily reproduce without the need for sporulation under optimal conditions.↵↵The ability of L. lactis subsp. lactis UC11 to thrive in multiple habitats, particularly in controlled fermentation environments, suggests a significant potential for its application in biotechnology, particularly in the dairy industry. Its optimal growth temperature and metabolic flexibility may also hint at its utility in the development of specific starter cultures tailored for enhancing flavors and textures in various fermented foods." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP015904.2 Bac0016238 Lactococcus cremoris strain JM4 "Lactococcus cremoris strain JM4 is a Gram-positive, non-sporulating coccus that demonstrates facultative anaerobic metabolism, thriving in various habitats. This strain exhibits optimal growth at 40.0°C, a temperature that may suggest its adaptation to specific environments where such warmth is prevalent. The coccoid morphology of Lactococcus cremoris strain JM4 is characteristic of the broader genus Lactococcus, which is known for its role in dairy fermentation processes and other biotechnological applications.↵↵Lactococcus species, including strain JM4, are often utilized in the production of fermented dairy products, highlighting their importance in food microbiology. The ability to grow in the presence or absence of oxygen expands the ecological niches that this strain can occupy, allowing it to thrive in diverse environments ranging from dairy fermentations to potentially more complex ecosystems.↵↵Given its temperature preference and versatile oxygen requirement, Lactococcus cremoris strain JM4 may play a significant role in specific fermentation processes within warmer habitats. This adaptability not only underscores its potential applications in food technology but may also provide insights into microbial community dynamics in warmer, oxygen-variable environments. Further research into its metabolic capabilities could reveal additional applications in industrial microbiology and food science." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 NZ_CP015909.2 Bac0016239 Brachyspira hyodysenteriae ATCC 27164 strain B-78 "Brachyspira hyodysenteriae ATCC 27164 strain B-78 is a Gram-negative, nonsporulating bacterium characterized by its spirilla shape and solitary cell arrangement. This anaerobic organism thrives optimally at a temperature of 37.0°C, indicating its potential adaptation to warm-blooded hosts. As a chemoheterotroph, B. hyodysenteriae utilizes organic compounds for energy, which reflects its metabolic versatility and ecological adaptability.↵↵This strain's ability to inhabit multiple environments suggests a broad ecological niche, although specific habitat details are not provided. The absence of sporulation in this strain implies that it may rely on other survival strategies, such as forming biofilms or existing in symbiotic relationships, to endure unfavorable conditions. The unique combination of anaerobic metabolism and a preference for temperatures typical of mammalian hosts may position B. hyodysenteriae as a crucial player in the microbial communities associated with the gastrointestinal tracts of animals.↵↵Overall, Brachyspira hyodysenteriae ATCC 27164 strain B-78 exemplifies the intricate adaptations of spirilla within anaerobic environments, highlighting its role in the microbial ecology of hosts where it potentially interacts with other gut microbiota. Further investigation into its ecological interactions may provide insights into its functional contributions to host health and disease." Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae Negative Spirilla Yes 1 2 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Free living Singles Nonsporulating 1266923 NZ_CP015910.2 Bac0016240 Arachidicoccus sp. BS20 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Arachidicoccus Arachidicoccus ginsenosidimutans 1850526 NZ_CP015971.1 Bac0016241 Pseudomonas sp. TCU-HL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. TCU-HL1 1856685 NZ_CP015992.1 Bac0016242 Anaplasma ovis str. Haibei Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Anaplasma Anaplasma ovis 1248439 NZ_CP015994.1 Bac0016243 Burkholderia sp. KK1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. KK1 1855726 NZ_CP015999.1 Bac0016244 Bacillus weihaiensis strain Alg07 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus weihaiensis 1547283 NZ_CP016020.1 Bac0016245 Ralstonia insidiosa strain ATCC 49129 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia insidiosa 190721 NZ_CP016024.1 Bac0016246 Erythrobacter neustonensis strain DSM 9434 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter neustonensis 1112 NZ_CP016033.1 Bac0016247 Ectopseudomonas alcaliphila JAB1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas alcaliphila 741155 NZ_CP016162.1 Bac0016248 Bordetella bronchialis strain AU17976 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella bronchialis aerobic 463025 NZ_CP016171.1 Bac0016249 Amycolatopsis orientalis strain B-37 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis orientalis 29 mesophilic spore-forming 31958 NZ_CP016174.1 Bac0016250 Vibrio breoganii strain FF50 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio breoganii 553239 NZ_CP016179.1 Bac0016251 Marinomonas primoryensis strain AceL Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas primoryensis ice shelves 178399 NZ_CP016181.1 Bac0016252 Bacillus thuringiensis serovar coreanensis strain ST7 "Bacillus thuringiensis serovar coreanensis strain ST7 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain is notable for its habitat, being host-associated, which suggests it may have specific interactions with host organisms, potentially influencing its ecological niche. ↵↵The sporulating nature of Bacillus thuringiensis serovar coreanensis ST7 allows it to survive in varied environmental conditions, forming resilient spores that can endure unfavorable conditions until they encounter suitable environments for germination and growth. As a facultative anaerobe, this strain can metabolize in both the presence and absence of oxygen, offering it versatility in diverse habitats, particularly those associated with host organisms where oxygen levels may fluctuate.↵↵The host-associated lifestyle of this bacterium indicates a potential role in microbial communities, possibly contributing to the health or stability of host ecosystems, although specific interactions remain to be fully elucidated. Understanding the ecological implications of Bacillus thuringiensis serovar coreanensis strain ST7 could provide insights into its potential applications in biocontrol or its role in the microbiome of its associated hosts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating 180843 NZ_CP016194.1 Bac0016253 Eubacterium minutum ATCC 700079 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Eubacterium [Eubacterium] minutum anaerobic 888721 NZ_CP016202.1 Bac0016254 Prevotella scopos JCM 17725 strain W2052 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella scopos 1236518 NZ_CP016205.1 Bac0016255 Streptococcus sp. oral taxon 064 strain W10853 "Streptococcus sp. oral taxon 064 strain W10853 is characterized by its cocci shape, which is typical of many members within the Streptococcus genus. This strain is likely to exhibit the common features associated with streptococcal morphology, including a spherical form that may arrange in chains or pairs. ↵↵While the specific biochemical characteristics and growth requirements of strain W10853 are not detailed, members of the Streptococcus genus are generally known to thrive in diverse environments, including the oral cavity, where they can contribute to the complex microbial communities associated with dental health. Cocci bacteria, such as this strain, can engage in various metabolic processes that may influence their interactions with other microorganisms in the oral microbiome.↵↵Moreover, the presence of Streptococcus sp. oral taxon 064 suggests a potential role in the maintenance of oral health or the development of dental plaque, given the ecological niches that streptococci often occupy in the human mouth. The cocci shape of this strain may also facilitate its adherence to surfaces within the oral cavity, a characteristic that can be significant for its ecological fitness. Understanding the specific roles that such strains play in the oral microbiome could provide insights into their contributions to health and disease states, underscoring the importance of further characterizing these microorganisms in a broader ecological context." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. oral taxon 064 Cocci 712624 NZ_CP016208.1 Bac0016256 Minicystis rosea strain DSM 24000 Pseudomonadati Myxococcota Deltaproteobacteria Polyangiales Polyangiaceae Minicystis Minicystis rosea 888845 NZ_CP016211.1 Bac0016257 Vibrio crassostreae 9CS106 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio crassostreae 1191300 NZ_CP016228.1 Bac0016258 Cryobacterium arcticum strain PAMC 27867 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium arcticum 670052 NZ_CP016283.1 Bac0016259 Rhizobium leguminosarum strain Vaf10 "Rhizobium leguminosarum strain Vaf10 is a Gram-negative, rod-shaped bacterium that exists as single cells and exhibits aerobic respiration. As a nonsporulating organism, R. leguminosarum strain Vaf10 relies on a chemoheterotrophic lifestyle, deriving energy from organic compounds in its soil habitat. ↵↵This strain's habitat in soil suggests its potential role in nutrient cycling and interaction with plant roots, particularly in leguminous plants where it is known to participate in symbiotic nitrogen fixation. While specific symbiotic interactions of strain Vaf10 have not been detailed, members of the Rhizobium genus are typically recognized for their ability to form nodules on the roots of legumes, which facilitate the conversion of atmospheric nitrogen into a biologically available form, thereby enhancing soil fertility.↵↵The aerobic nature of R. leguminosarum strain Vaf10 indicates its requirement for oxygen to support metabolic processes, which may influence its distribution and activity in various soil environments, especially those with adequate aeration. Overall, the traits of this strain highlight its ecological significance in promoting plant growth and contributing to soil health through nitrogen fixation, emphasizing the intricate relationships between soil microbes and terrestrial ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP016286.1 Bac0016260 Vibrio scophthalmi strain VS-12 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio scophthalmi 45658 NZ_CP016308.1 Bac0016261 Thermus brockianus strain GE-1 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus 56956 NZ_CP016313.1 Bac0016262 Corynebacterium glutamicum strain ATCC 13869 "Corynebacterium glutamicum strain ATCC 13869 is a Gram-positive bacterium recognized for its industrial significance, particularly in amino acid production. This strain is a member of the Corynebacterium genus, characterized by its club-shaped morphology and pleomorphic nature. C. glutamicum has been extensively studied for its metabolic pathways, which enable the synthesis of various amino acids, including L-glutamate and L-lysine, making it a valuable organism in biotechnology and fermentation processes.↵↵The physiological traits of C. glutamicum include a robust ability to grow in rich media, facilitating its use in large-scale fermentations. This strain exhibits a high tolerance to osmotic and oxidative stress, which can enhance its viability in industrial applications. Additionally, C. glutamicum is known to possess various transport systems that efficiently uptake amino acids and other nutrients, reflecting its adaptability to different growth conditions.↵↵Corynebacterium glutamicum strain ATCC 13869 serves not only as a model organism for understanding amino acid biosynthesis but also as a platform for metabolic engineering. Its well-characterized genetic background allows for targeted modifications to improve production yields of commercially relevant compounds. This adaptability highlights the ecological role of C. glutamicum in nutrient cycling, particularly in environments where organic nitrogen sources are present, underscoring its potential contributions to biotechnological applications and sustainable practices in microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum positive 1718 NZ_CP016335.1 Bac0016263 Vibrio natriegens strain CCUG 16374 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio natriegens 691 NZ_CP016351.1 Bac0016264 Christiangramia flava JLT2011 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia flava 1229726 NZ_CP016359.1 Bac0016265 Phaeobacter porticola strain P97 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter porticola 1844006 NZ_CP016364.1 Bac0016266 Elizabethkingia anophelis strain F3201 "Elizabethkingia anophelis strain F3201 is a Gram-negative, nonsporulating rod-shaped bacterium characterized as a chemoheterotroph. This strain is capable of utilizing various organic compounds for energy, reflecting its adaptability in diverse environments. As an aerobic organism, E. anophelis strain F3201 requires oxygen for growth, which suggests it may thrive in well-aerated habitats.↵↵The habitat of E. anophelis is noted to be multiple, indicating a broad ecological range that may include water, soil, and possibly plant-associated environments. This versatility in habitat usage may contribute to its ecological resilience and ability to occupy niches within various ecosystems. ↵↵Given these traits, E. anophelis strain F3201 exemplifies the diverse metabolic capabilities found within the Elizabethkingia genus, highlighting the importance of studying such microorganisms to better understand their ecological roles and potential applications in biotechnology or environmental management. The ability of this strain to adapt to varying habitats underscores its potential significance in microbial ecology and interactions within its environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia anophelis Negative Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1117645 NZ_CP016374.1 Bac0016267 Anoxybacter fermentans strain DY22613 Bacillati Bacillota Clostridia Halanaerobiales Anoxybacter Anoxybacter fermentans anaerobic 1323375 NZ_CP016379.1 Bac0016268 Lactobacillus delbrueckii subsp. bulgaricus strain ND04 "Lactobacillus delbrueckii subsp. bulgaricus strain ND04 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives at an optimal temperature of 42.0 °C and is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen. L. delbrueckii subsp. bulgaricus is commonly found in various habitats, particularly in dairy environments, contributing to the fermentation processes involved in yogurt production and other dairy products.↵↵The strain's ability to grow optimally at elevated temperatures suggests an adaptation to specific niches, such as warm dairy fermentation systems. This thermal preference may facilitate its competitive edge in environments where other microbial competitors are less able to thrive. Additionally, its facultative anaerobic nature allows it to exploit diverse environments, potentially enhancing its role in the fermentation of lactose and other sugars present in dairy substrates. This adaptability underscores the ecological versatility of L. delbrueckii subsp. bulgaricus strain ND04 and its significant contribution to the dairy industry, particularly in the production and preservation of fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1585 NZ_CP016393.1 Bac0016269 Mycobacterium avium strain RCAD0278 "Mycobacterium avium strain RCAD0278 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, which aligns with its adaptability to various habitats. This strain requires oxygen for growth, categorizing it as an aerobe, which suggests it thrives in environments with sufficient oxygen availability.↵↵The environmental versatility of Mycobacterium avium strain RCAD0278 may contribute to its presence in diverse ecological niches, revealing its potential role in nutrient cycling within those environments. Understanding the specific habitats in which this strain can be found could provide insights into its ecological interactions and functional capabilities in microbial communities. Further study may elucidate its contributions to ecosystem dynamics and its potential applications in biotechnology or bioremediation processes." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 1764 NZ_CP016396.1 Bac0016270 Lactobacillus johnsonii strain BS15 "Lactobacillus johnsonii strain BS15 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a facultative anaerobe. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for relatively moderate environmental conditions. As a member of the Lactobacillus genus, L. johnsonii strain BS15 is predominantly host-associated, indicating its presence in various host organisms, which may include humans and animals.↵↵The facultative anaerobic nature of this strain allows it to adapt to varying oxygen levels, potentially enabling it to colonize diverse niches within the host. The ability to form chains may enhance its stability and persistence in the host environment, facilitating interactions with other microbial species and the host immune system. ↵↵Overall, Lactobacillus johnsonii strain BS15 exemplifies the characteristics of a versatile microbe, capable of existing in diverse environments and contributing to the microbiota of host organisms. Its adaptation to moderate temperatures and facultative anaerobic metabolism may play a crucial role in its ecological interactions and functional contributions within the microbial community." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus johnsonii Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic HostAssociated Free living Chains Non-pathogenic 33959 NZ_CP016400.1 Bac0016271 Vibrio scophthalmi strain VS-05 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio scophthalmi 45658 NZ_CP016415.1 Bac0016272 Bradyrhizobium icense strain LMTR 13 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium icense 1274631 NZ_CP016428.1 Bac0016273 Methylobacterium sp. XJLW Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. XJLW 739141 NZ_CP016429.1 Bac0016274 Prosthecochloris sp. CIB 2401 strain CIB2401 Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. CIB 2401 1868325 NZ_CP016432.1 Bac0016275 Burkholderia sp. AD24 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. AD24 1528693 NZ_CP016434.1 Bac0016276 Hyphomonas sp. CACIAM 19H1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Hyphomonas Hyphomonas sp. CACIAM 19H1 1873716 NZ_CP016437.1 Bac0016277 Streptomyces lincolnensis strain NRRL 2936 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lincolnensis 1915 NZ_CP016438.1 Bac0016278 Burkholderia stabilis strain ATCC BAA-67 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia stabilis Yes heart; liver; lung; lungs 95485 NZ_CP016442.1 Bac0016279 Hydrogenophaga sp. RAC07 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. RAC07 1842537 NZ_CP016449.1 Bac0016280 Lactiplantibacillus pentosus strain BGM48 "Lactiplantibacillus pentosus strain BGM48 is a Gram-positive, non-sporulating rod-shaped bacterium characterized as a facultative anaerobe and a chemoheterotroph. This strain thrives optimally at a temperature of 30.0°C and exhibits versatility in energy acquisition, utilizing organic compounds from various habitats. The ability to grow in both aerobic and anaerobic conditions enables L. pentosus BGM48 to occupy diverse ecological niches, potentially contributing to various fermentation processes and the maintenance of microbial balance in its environments.↵↵Given its broad habitat range, L. pentosus BGM48 may play a significant role in the fermentation of plant materials, which could influence the flavor profiles and preservation of food products. Understanding the metabolic capabilities of this strain could provide insights into its applications in food science, particularly in the enhancement of probiotic products and fermentation technology. Furthermore, its facultative anaerobic nature suggests adaptability to fluctuating environmental oxygen levels, which may confer advantages in competitive microbial communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus pentosus Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1589 NZ_CP016491.1 Bac0016281 Planococcus plakortidis strain DSM 23997 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus plakortidis 1038856 NZ_CP016539.2 Bac0016282 Planococcus versutus strain L10.15 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus versutus 1302659 NZ_CP016540.2 Bac0016283 Geobacillus stearothermophilus strain DSM 458 "Geobacillus stearothermophilus strain DSM 458 is a Gram-variable, rod-shaped bacterium characterized by its ability to thrive in high-temperature environments, specifically those associated with active volcanic areas and instances of spoiled canned food. As an aerobic organism, this strain requires oxygen for growth, which aligns with its habitat preferences that often include environments rich in thermal activity and organic material.↵↵This bacterium is notable for its thermophilic nature, allowing it to endure and proliferate in elevated temperatures that would be inhospitable to many other microbial species. The presence of G. stearothermophilus in spoiled canned food suggests its potential role in the spoilage processes of thermally processed foods, where it may survive and grow under inadequate sterilization conditions.↵↵The ecological niche of strain DSM 458 highlights its adaptability and resilience, particularly in extreme environments where it may contribute to biogeochemical cycles. Its ability to survive in both volcanic habitats and spoiled food products indicates a versatile metabolic capacity that may facilitate its function as a decomposer in diverse ecosystems. Understanding the specific metabolic pathways and survival strategies of G. stearothermophilus could provide insights into microbial ecology in extreme environments, as well as implications for food safety and preservation technologies." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe thermophilic active volcanic area; spoiled canned food 1422 NZ_CP016552.1 Bac0016284 Leuconostoc lactis strain WiKim40 "Leuconostoc lactis strain WiKim40 is a Gram-positive, non-sporulating coccus that thrives in a variety of habitats, predominantly associated with dairy products and fermented foods. This strain is commonly found in environments such as cheese, milk, whey, kimchi, and even in some vegetable and meat products, indicating its versatility and adaptability within food matrices.↵↵As a facultative anaerobe, L. lactis strain WiKim40 has the ability to grow in both aerobic and anaerobic conditions, which enhances its potential utility in industrial fermentation processes. This adaptability is particularly advantageous in the production of fermented dairy products where oxygen levels can vary significantly.↵↵The presence of this strain in diverse fermented foods suggests its role in complex microbial ecosystems, where it may contribute to flavor development and preservation. The metabolic activities of L. lactis strain WiKim40 can influence the sensory properties of food products, making it a valuable organism in food biotechnology. Understanding its interactions within these environments could provide insights into the dynamics of microbial communities in fermentation processes and the potential for enhancing food quality and safety." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc lactis Positive Coccus Facultative anaerobe cheese; dairy; dairy products; fermented foods; food products; kimchi; meat; milk; Milk; vegetables; whey; wine Nonsporulating 1246 NZ_CP016598.1 Bac0016285 Mycobacterium sp. djl-10 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. djl-10 1879023 NZ_CP016640.1 Bac0016286 Lactococcus cremoris strain JM3 "Lactococcus cremoris strain JM3 is a Gram-positive cocci that demonstrates facultative anaerobic growth, thriving optimally at a temperature of 40.0°C. This strain is nonsporulating, which aligns with the general characteristics of the Lactococcus genus, known for its role in dairy fermentation and food production. ↵↵Lactococcus cremoris strains, including JM3, are typically found in diverse habitats, particularly in various dairy environments where they contribute to the production of fermented products such as cheese and yogurt. The ability of this strain to grow in both aerobic and anaerobic conditions suggests a versatile metabolic capability, allowing it to adapt to varying environmental oxygen levels encountered in its natural habitats.↵↵In terms of its ecological role, Lactococcus cremoris strain JM3 is likely involved in the complex microbial interactions that occur during the fermentation processes in dairy products. Its presence can influence flavor development, texture, and preservation of these products, showcasing the importance of this strain not only in food microbiology but also in sustaining microbial diversity in dairy ecosystems. Understanding the specific contributions of strain JM3 within these environments may provide insights into optimizing fermentation processes and enhancing the quality of dairy products." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 NZ_CP016738.2 Bac0016287 Lactococcus cremoris strain JM1 "Lactococcus cremoris strain JM1 is a Gram-positive, nonsporulating cocci that thrives as a facultative anaerobe, with an optimal growth temperature of 40.0 °C. This strain is part of a diverse group of lactic acid bacteria known for their role in fermentation processes, particularly in dairy products. The ability to grow in multiple habitats suggests a versatile nature, enabling it to adapt to various environmental conditions.↵↵The coccal shape and nonsporulating characteristic indicate a reliance on vegetative growth under suitable conditions rather than forming spores as a means of survival. This trait may enhance its utility in controlled fermentation processes where rapid growth and metabolic activity are desirable. As a facultative anaerobe, L. cremoris strain JM1 can metabolize substrates in both the presence and absence of oxygen, providing it with a competitive advantage in dynamic environments where oxygen levels may fluctuate.↵↵Furthermore, the optimal temperature of 40.0 °C suggests that this strain may be particularly well-suited for applications that require elevated temperatures, such as certain fermentation processes in dairy production. Understanding the growth and metabolic characteristics of Lactococcus cremoris strain JM1 can provide insights into its potential applications in food technology, particularly in the development of fermented products that benefit from its lactic acid production capabilities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 NZ_CP016746.2 Bac0016288 Fictibacillus arsenicus strain G25-54 "Fictibacillus arsenicus strain G25-54 is a Gram-positive, spore-forming bacterium characterized by its rod-shaped morphology and aerobic metabolism. This strain thrives optimally at a temperature of 29.0°C, indicating a potential preference for moderately warm environments. The ability to form spores suggests that Fictibacillus arsenicus strain G25-54 can endure unfavorable conditions, allowing it to survive in environments where nutrients may be scarce or where it faces other stressors. ↵↵The aerobic requirement of this strain implies that it relies on oxygen for its metabolic processes, positioning it within habitats rich in oxygen. This trait is particularly relevant for its potential applications in bioremediation, especially in environments contaminated with arsenic, as indicated by its nomenclature. ↵↵Overall, Fictibacillus arsenicus strain G25-54 exemplifies the adaptive strategies of certain microbial species to thrive in specific ecological niches, particularly where oxygen is available and conditions permit sporulation for survival during adverse periods. Further studies may elucidate its role in biogeochemical cycles involving arsenic and its potential utility in environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Fictibacillaceae Fictibacillus Fictibacillus arsenicus Gram-positive rod aerobic 29 mesophilic spore-forming 255247 NZ_CP016761.1 Bac0016289 Candidatus Planktophila versatilis Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae Candidatus Planktophila Candidatus Planktophila versatilis 1884905 NZ_CP016775.1 Bac0016290 Streptomyces olivaceus strain KLBMP 5084 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces olivaceus aerobic 29 mesophilic spore-forming 47716 NZ_CP016795.1 Bac0016291 Levilactobacillus brevis strain TMW 1.2112 "Levilactobacillus brevis strain TMW 1.2112 is a Gram-positive, rod-shaped bacterium that typically forms chains or exists as single cells. This strain exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for L. brevis TMW 1.2112 is approximately 25.0°C, indicating a preference for moderate temperature conditions.↵↵The habitat of L. brevis TMW 1.2112 is noted to be diverse, which suggests its adaptability to various ecological niches. This versatility may be attributed to its metabolic capabilities, allowing it to utilize different substrates for energy under varying oxygen conditions. The ability to grow in multiple environments could also reflect its role in fermentation processes, particularly in the production of certain fermented foods or beverages.↵↵Understanding the physiological traits of Levilactobacillus brevis strain TMW 1.2112 may provide insights into its potential applications in food technology or probiotic development. Additionally, its facultative anaerobic nature and moderate temperature preference might contribute to its ecological success in environments where fluctuating oxygen levels and temperatures are prevalent." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP016797.1 Bac0016292 Halodesulfurarchaeum formicicum strain HSR6 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum formicicum 1873524 NZ_CP016804.1 Bac0016293 Lactobacillus helveticus strain D76 "Lactobacillus helveticus strain D76 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic growth. This strain is known to inhabit multiple environments, which is characteristic of the Lactobacillus genus, often associated with dairy fermentation processes. The ability to thrive in both aerobic and anaerobic conditions allows L. helveticus D76 to adapt to various ecological niches, enhancing its utility in food production and probiotic applications.↵↵In dairy products, Lactobacillus helveticus is recognized for its role in the fermentation process, contributing to flavor development and texture in cheeses, particularly in the ripening of Swiss cheese. The strain's unique morphological characteristics, such as its chain formation, may influence its metabolic interactions within microbial communities found in dairy environments. ↵↵Furthermore, the versatility of L. helveticus D76 in diverse habitats suggests its potential for biotechnological applications beyond dairy, including in the production of functional foods and dietary supplements. The strain's adaptability in various oxygen conditions further underscores its ecological resilience, positioning it as a valuable organism in both traditional fermentation practices and modern food science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 NZ_CP016827.1 Bac0016294 Carnobacterium maltaromaticum strain TMW 2.1581 "Carnobacterium maltaromaticum strain TMW 2.1581 is a rod-shaped, nonsporulating bacterium that typically arranges itself in chains. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, allowing it to adapt to various habitats. Its metabolism is characterized as chemoheterotrophic, indicating that it derives energy from organic compounds, which positions it as a versatile organism capable of exploiting a range of substrates. ↵↵This strain has been isolated from diverse environments, suggesting its ecological adaptability and potential role in different microbial communities. The ability to grow in both oxygen-rich and oxygen-poor settings might confer a competitive advantage in fluctuating environments, allowing it to persist in niches where other microbes may struggle.↵↵The unique combination of traits exhibited by Carnobacterium maltaromaticum strain TMW 2.1581 highlights its ecological significance, particularly in environments where organic matter is present, such as in food systems or within various natural ecosystems. Its metabolic flexibility and chain-forming arrangement may facilitate cooperative interactions within microbial communities, potentially influencing nutrient cycling and the stability of the habitats it occupies." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium maltaromaticum Rod No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Chains Nonsporulating 2751 NZ_CP016844.1 Bac0016295 Pseudomonas sp. TMW 2.1634 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. TMW 2.1634 1886807 NZ_CP016850.1 Bac0016296 Xanthomonas hortorum strain B07-007 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hortorum 56454 NZ_CP016878.1 Bac0016297 Acinetobacter soli strain GFJ2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter soli 487316 NZ_CP016899.1 Bac0016298 Serratia surfactantfaciens strain YD25 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia surfactantfaciens 2741499 NZ_CP016948.1 Bac0016299 Cutibacterium avidum strain DPC 6544 "Cutibacterium avidum strain DPC 6544 is a Gram-positive, nonsporulating rod that exhibits facultative anaerobic growth and derives its energy through chemoheterotrophic metabolism. This strain is part of a diverse microbial community, capable of thriving in multiple habitats, which may include skin and other human-associated environments, highlighting its adaptability to various ecological niches.↵↵Being a facultative anaerobe, C. avidum strain DPC 6544 can utilize oxygen when available but also has the metabolic flexibility to grow in its absence, allowing it to colonize anaerobic environments as well. The chemoheterotrophic nature of this strain indicates that it relies on organic compounds for carbon and energy, which may facilitate its survival in diverse habitats rich in organic substrates, such as human skin or sebaceous environments.↵↵The ability of C. avidum strain DPC 6544 to inhabit multiple environments and adapt to varying oxygen levels suggests a significant role in the microbial ecology of its habitats, potentially contributing to the maintenance of skin homeostasis. This adaptability may also offer insights into its interactions with other microbial species and its potential functions in the microbiome, although specific ecological roles remain to be elucidated." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium avidum positive Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 33010 NZ_CP016954.1 Bac0016300 Aeromonas hydrophila strain ZYAH75 "Aeromonas hydrophila strain ZYAH75 is a Gram-negative, rod-shaped bacterium that demonstrates versatile growth patterns, often appearing in chains, pairs, or as single cells. This strain thrives optimally at a temperature of 22.0°C and exhibits facultative aerobic respiration, allowing it to adapt to varying oxygen levels in its environment. As a heterotroph, A. hydrophila strain ZYAH75 relies on organic compounds for energy, which supports its presence in diverse habitats.↵↵The ability of this strain to grow under varying oxygen conditions suggests a degree of ecological versatility, which may facilitate its survival in both aquatic and terrestrial environments. This adaptability is particularly relevant considering the wide-ranging habitats reported for A. hydrophila, which can include freshwater, brackish, and even some marine ecosystems. Such environmental flexibility may enable this strain to play a role in nutrient cycling within these ecosystems, although further research would be necessary to elucidate its specific ecological functions. Overall, Aeromonas hydrophila strain ZYAH75 exemplifies a microbial organism capable of thriving in varied conditions, highlighting the ecological significance of heterotrophic bacteria in complex environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 644 NZ_CP016990.1 Bac0016301 Rhodococcus sp. WMMA185 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. WMMA185 679318 NZ_CP017014.1 Bac0016302 Spiroplasma helicoides strain TABS-2 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma helicoides microaerophile 216938 NZ_CP017015.1 Bac0016303 Moorella thermoacetica strain DSM 103132 Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella thermoacetica thermophilic 1525 NZ_CP017019.1 Bac0016304 Anaerolineaceae bacterium oral taxon 439 strain W11661 Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Anaerolineaceae bacterium oral taxon 439 1889813 NZ_CP017039.1 Bac0016305 Selenomonas sp. oral taxon 920 strain W5150 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. oral taxon 920 1884263 NZ_CP017043.1 Bac0016306 Bacillus cereus strain FORC_047 "Bacillus cereus strain FORC_047 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism, thriving optimally at a temperature of 25.0°C. This strain is part of a diverse genus known for its ability to inhabit multiple environments, suggesting a versatile ecological adaptability. The presence of chains in its cellular arrangement may contribute to its survival strategies in various habitats, potentially enhancing its resilience against environmental stressors.↵↵As an aerobic organism, Bacillus cereus strain FORC_047 requires oxygen for its metabolic processes, which aligns with the general characteristics of its genus. The ability to exist in diverse habitats also implies that this strain may play a role in various biogeochemical cycles, particularly in nutrient cycling within its ecological niches. Understanding the specific environmental conditions that support the growth and activity of this strain could provide insights into its ecological roles and potential interactions with other microorganisms in its habitat. ↵↵Overall, the traits of Bacillus cereus strain FORC_047 underscore its adaptability and potential contributions to microbial communities, highlighting the importance of studying such strains in the context of environmental microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP017060.1 Bac0016307 Lacticaseibacillus rhamnosus strain LR5 "Lacticaseibacillus rhamnosus strain LR5 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic metabolism, thriving optimally at 37.0°C. This strain is part of a diverse habitat range, suggesting its adaptability to various environmental conditions. As a member of the Lacticaseibacillus genus, it is likely involved in the fermentation of carbohydrates, contributing to lactic acid production and potentially influencing the microbial balance in its habitat.↵↵The facultative anaerobic nature of L. rhamnosus strain LR5 indicates its capability to grow in both aerobic and anaerobic environments, allowing it to occupy niches where oxygen availability fluctuates. This trait enhances its ecological versatility, enabling it to thrive in diverse ecosystems, including dairy products, fermented foods, and the gastrointestinal tracts of mammals.↵↵The optimal growth temperature of 37.0°C aligns with the physiological temperature of warm-blooded animals, suggesting that L. rhamnosus strain LR5 may play a role in the microbiota of such hosts, although its specific interactions within these communities remain to be elucidated. The strain's ability to inhabit multiple environments underscores its ecological significance, as it may contribute to gut health and play a role in fermentation processes across various substrates. Further studies could reveal additional functional roles of L. rhamnosus strain LR5 in microbial ecosystems and its potential applications in food and health industries." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic Multiple Free living 47715 NZ_CP017063.1 Bac0016308 Luteimonas sp. JM171 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas sp. JM171 1896164 NZ_CP017074.1 Bac0016309 Novosphingobium resinovorum strain SA1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium resinovorum 158500 NZ_CP017075.1 Bac0016310 Peribacillus muralis strain G25-68 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus muralis 264697 NZ_CP017080.1 Bac0016311 Rhizobium gallicum strain IE4872 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium gallicum 56730 NZ_CP017103.1 Bac0016312 Ligilactobacillus salivarius strain CICC 23174 "Ligilactobacillus salivarius strain CICC 23174 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic characteristics. This strain is host-associated, indicating its natural habitat is within specific host organisms, where it likely plays a role in the microbial community of the host's gastrointestinal tract. ↵↵As a member of the Lactobacillus genus, Ligilactobacillus salivarius is known for its potential probiotic properties, contributing to gut health and the maintenance of a balanced microbiome. The facultative anaerobic nature of this strain allows it to thrive in varying oxygen conditions, which may enhance its adaptability within the host's digestive environment. ↵↵The presence of Ligilactobacillus salivarius strain CICC 23174 in host-associated environments suggests its potential involvement in various metabolic processes, including fermentation and the production of beneficial metabolites such as lactic acid. These activities may contribute to the inhibition of pathogenic bacteria and the overall health of the host. Given these traits, further research could elucidate the specific roles and benefits associated with Ligilactobacillus salivarius strain CICC 23174 in the complex interplay of host-microbe interactions, highlighting its ecological significance in promoting host wellness." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NZ_CP017109.1 Bac0016313 Porphyrobacter sp. LM 6 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. LM 6 1896196 NZ_CP017113.1 Bac0016314 Borrelia miyamotoi strain CT13-2396 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia miyamotoi 47466 NZ_CP017126.1 Bac0016315 Aeromonas salmonicida subsp. masoucida strain RFAS1 "Aeromonas salmonicida subsp. masoucida strain RFAS1 is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. As a facultative anaerobe, this strain can utilize oxygen for respiration when available but also possesses the capability to grow in its absence, relying on fermentation or anaerobic respiration. This metabolic flexibility allows A. salmonicida subsp. masoucida strain RFAS1 to adapt to varying oxygen levels commonly found in aquatic habitats, such as freshwater and marine ecosystems.↵↵Being a heterotroph, this strain derives its energy from organic compounds, which may include various substrates present in its environment. The ecological role of A. salmonicida subsp. masoucida strain RFAS1 may involve the decomposition of organic matter and nutrient cycling within aquatic systems, potentially influencing the microbial community dynamics and overall health of these ecosystems. Understanding the metabolic capabilities and ecological interactions of this bacterium can provide insights into its role in aquatic environments and its potential impact on aquatic life forms." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 197700 NZ_CP017144.1 Bac0016316 Bosea vaviloviae strain Vaf18 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea vaviloviae 1526658 NZ_CP017147.1 Bac0016317 Macrococcus sp. IME1552 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus sp. IME1552 1898474 NZ_CP017156.1 Bac0016318 Clostridium taeniosporum strain 1/k Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium taeniosporum 394958 NZ_CP017256.2 Bac0016319 Campylobacter pinnipediorum subsp. caledonicus strain M341/11/05 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter pinnipediorum 1874362 NZ_CP017258.1 Bac0016320 Formosa sp. Hel3_A1_48 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Formosa Formosa sp. Hel3_A1_48 1336795 NZ_CP017259.1 Bac0016321 Formosa sp. Hel1_33_131 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Formosa Formosa sp. Hel1_33_131 1336794 NZ_CP017260.1 Bac0016322 Vagococcus teuberi strain DSM 21459 "Vagococcus teuberi strain DSM 21459 is a Gram-positive, non-sporulating coccus that resides within the gut of its host. This bacterium exemplifies the diversity of gut microbiota, contributing to the complex microbial ecosystem that plays a crucial role in the digestion and metabolism of nutrients. Its coccal shape indicates a spherical morphology, which is characteristic of several genera within the Lactobacillaceae family, although its specific interactions and functions within the gut environment remain to be fully elucidated.↵↵As a non-sporulating organism, Vagococcus teuberi strain DSM 21459 relies on alternative survival strategies in the gut, where it must contend with dynamic conditions such as fluctuating pH and varying nutrient availability. The presence of this strain within the host gut may suggest potential interactions with other microbial communities, including competitive and symbiotic relationships that could influence gut health and function.↵↵The ecological role of Vagococcus teuberi strain DSM 21459 may be particularly significant in maintaining gut homeostasis, as gut-dwelling microbes often contribute to the fermentation of dietary fibers and the production of short-chain fatty acids, which serve as important energy sources for host cells. Understanding the specific contributions of Vagococcus teuberi strain DSM 21459 to gut microbiota dynamics may provide insights into its potential benefits for host health and the overall stability of the gut ecosystem." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus teuberi Positive Cocci No 1 Host Gut Nonsporulating 519472 NZ_CP017267.1 Bac0016323 Pseudomonas sp. LPH1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LPH1 1898684 NZ_CP017290.1 Bac0016324 Brachybacterium sp. P6-10-X1 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium sp. P6-10-X1 1903186 NZ_CP017297.1 Bac0016325 Chlorobaculum limnaeum strain DSM 1677 "Chlorobaculum limnaeum strain DSM 1677 is a rod-shaped phototrophic bacterium recognized for its unique metabolic capabilities. As a member of the Chlorobiaceae family, this strain utilizes light as its primary energy source, engaging in photosynthesis to sustain its growth. The rod morphology of Chlorobaculum limnaeum is characteristic of its genus, contributing to its adaptability in various aquatic environments where it typically thrives.↵↵The phototrophic nature of Chlorobaculum limnaeum indicates that it possesses specialized pigments, such as bacteriochlorophyll, which facilitate the capture of light energy for the conversion of carbon compounds. This ability to harness solar energy not only underscores its ecological role in primary production but also positions it as an important player in the cycling of nutrients within its habitat. By contributing to the organic matter in aquatic ecosystems, Chlorobaculum limnaeum can influence the dynamics of microbial communities and the overall health of its environment.↵↵Furthermore, the presence of this bacterium in diverse aquatic systems highlights its potential contribution to biogeochemical processes, such as sulfur cycling, although specific interactions and ecological roles require further investigation. Overall, Chlorobaculum limnaeum strain DSM 1677 exemplifies the intricate relationships between microbial life and ecosystem functionality, particularly in light-driven environments." Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum limnaeum rod non-motile phototroph 274537 NZ_CP017305.1 Bac0016326 Streptomyces rubrolavendulae strain MJM4426 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rubrolavendulae 285473 NZ_CP017316.1 Bac0016327 Weissella soli strain KACC 11848 "Weissella soli strain KACC 11848 is a rod-shaped microbe characterized by its presence in garden soil and a variety of soil environments. This strain typically exhibits a cellular arrangement of single cells and pairs, which is reflective of its adaptability to the soil habitat. The morphology and arrangement of Weissella soli suggest a potential role in the soil microbiome, where it may contribute to nutrient cycling and soil health.↵↵As a member of the Weissella genus, this strain may be involved in various biochemical processes, although specific metabolic capabilities are not detailed in the provided traits. The isolation of Weissella soli from garden soil indicates its ecological significance in terrestrial ecosystems, where it could interact with plants and other soil microorganisms. Furthermore, the presence of this strain in soil suggests a possible role in the fermentation processes that may occur within this habitat, although further investigation would be required to elucidate its functional contributions.↵↵Overall, Weissella soli strain KACC 11848 exemplifies the diversity of microbial life in soil environments and highlights the importance of such microbes in maintaining ecological balance and promoting soil fertility. Understanding the specific roles of strains like Weissella soli in soil ecosystems could lead to insights into sustainable agricultural practices and soil management strategies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella soli Rod garden soil; soil "Singles, Pairs" 155866 NZ_CP017326.1 Bac0016328 Lactiplantibacillus plantarum strain TMW 1.277 "Lactiplantibacillus plantarum strain TMW 1.277 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments. The optimal growth temperature for L. plantarum TMW 1.277 is approximately 25.0°C, indicating a preference for moderate thermal conditions.↵↵The habitat of L. plantarum strain TMW 1.277 is diverse, which is characteristic of many species within the Lactobacillus genus, suggesting a versatile adaptability to various ecological niches. This adaptability may contribute to its potential roles in fermentation processes and its presence in various fermented foods, as well as its involvement in microbial ecosystems. ↵↵The ability of L. plantarum TMW 1.277 to grow under varying oxygen conditions further emphasizes its ecological versatility, allowing it to occupy niches that may fluctuate between aerobic and anaerobic conditions. This trait may also facilitate interactions with other microorganisms, contributing to complex microbial communities. Understanding the ecological roles of L. plantarum strains like TMW 1.277 can provide insights into their potential applications in food preservation, probiotic formulations, and biotechnological processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 NZ_CP017363.1 Bac0016329 Arthrobacter sp. ZXY-2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. ZXY-2 1806905 NZ_CP017421.1 Bac0016330 Achromobacter ruhlandii strain SCCH3:ACH 33-1365 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter ruhlandii 72557 NZ_CP017433.1 Bac0016331 Acidihalobacter aeolianus strain V6 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Acidihalobacter Acidihalobacter aeolianus 2792603 NZ_CP017449.1 Bac0016332 Staphylococcus nepalensis strain JS1 "Staphylococcus nepalensis strain JS1 is a Gram-positive, nonsporulating coccus that typically exists as single cells. This bacterium is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which aligns with its facultative anaerobic nature, allowing it to thrive in both aerobic and anaerobic environments. The versatility in its energy metabolism suggests a broad adaptability to various habitats, which may encompass diverse ecological niches.↵↵Given its ability to grow in multiple environments, Staphylococcus nepalensis strain JS1 may play a role in nutrient cycling within its ecosystems, potentially interacting with other microorganisms. This adaptability highlights the importance of this strain in studying microbial ecology and the dynamics of microbial communities in varying conditions. Further investigation into its specific habitat preferences and interactions with other microbial species could provide valuable insights into its ecological roles and contributions." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus nepalensis Positive Cocci No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Singles Nonsporulating 214473 NZ_CP017462.1 Bac0016333 Hydrogenophaga crassostreae strain LPB0072 "Hydrogenophaga crassostreae strain LPB0072 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at 25.0°C. This strain is part of a genus known for its adaptability to various environmental conditions, often thriving in aquatic habitats. The Gram-negative nature of H. crassostreae indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer advantages in nutrient acquisition and resistance to certain environmental stressors.↵↵As an aerobic organism, H. crassostreae strain LPB0072 requires oxygen for its metabolic processes, which suggests it may occupy niches with sufficient oxygen availability, such as surface waters or well-oxygenated sediments. The optimal growth temperature of 25.0°C aligns with temperate aquatic environments, indicating that this strain is well-suited to conditions that are not extreme in terms of thermal stress.↵↵Understanding the physiological traits of Hydrogenophaga crassostreae strain LPB0072 can provide insights into its potential roles in nutrient cycling within its ecosystem, particularly in the degradation of organic matter or in processes involving hydrogen metabolism. This bacterium may play a significant role in maintaining ecological balance in its habitat by participating in biogeochemical cycles, particularly those involving sulfur and nitrogen compounds, which are often linked to the metabolic activities of aerobic bacteria." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga crassostreae Gram-negative rod motile aerobic 25 mesophilic 1763535 NZ_CP017476.1 Bac0016334 Urechidicola croceus strain LPB0138 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Urechidicola Urechidicola croceus 1850246 NZ_CP017478.1 Bac0016335 Luteibacter rhizovicinus DSM 16549 strain LJ96 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter rhizovicinus 1440763 NZ_CP017480.1 Bac0016336 Sporosarcina ureilytica strain LMG 22257 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina ureilytica 298596 NZ_CP017560.1 Bac0016337 Bacillus thuringiensis strain SCG04-02 "Bacillus thuringiensis strain SCG04-02 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and functions as a facultative anaerobe. This strain, like other members of the Bacillus genus, is known for its ability to form endospores, which allows it to survive in various environmental conditions. The host-associated habitat of SCG04-02 suggests a potential symbiotic or parasitic relationship with specific organisms, although further investigation would be necessary to elucidate the nature of these interactions.↵↵As a facultative anaerobe, Bacillus thuringiensis strain SCG04-02 can thrive in both aerobic and anaerobic environments, which may contribute to its adaptability in diverse ecological niches. This metabolic flexibility could be advantageous for its survival within host organisms, where oxygen levels may vary significantly. The ability to sporulate further supports its resilience, enabling the strain to endure adverse conditions that might otherwise threaten its viability.↵↵Overall, the combination of its Gram-positive nature, rod shape, sporulation capability, and facultative anaerobic metabolism suggests that Bacillus thuringiensis strain SCG04-02 plays a specific role in its ecological niche, potentially influencing microbial dynamics within its host environment. Understanding these traits may provide insights into its functional roles in microbial communities and its potential applications in biocontrol or biotechnology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP017574.1 Bac0016338 Candidatus Hamiltonella defensa strain A2C "*Candidatus Hamiltonella defensa* strain A2C is a Gram-negative, rod-shaped bacterium that is primarily associated with host organisms. This microbe is notable for its symbiotic relationships, often residing within the tissues of various insect hosts. The specific interactions between *Candidatus Hamiltonella defensa* and its hosts suggest a potential role in influencing host physiology or defense mechanisms.↵↵As a member of the Hamiltonella genus, this strain may contribute to the overall fitness of its insect hosts, possibly through the provision of protective functions against natural enemies or environmental stresses. The host-associated habitat indicates that the bacterium has evolved specifically to thrive in microenvironments provided by its hosts, which could include nutrient-rich conditions or specific immune evasion strategies.↵↵The rod shape of *Candidatus Hamiltonella defensa* strain A2C is characteristic of many bacteria in its classification, allowing for efficient mobility and adaptability within the host's microenvironment. Its Gram-negative nature suggests a complex cell wall structure, which may influence its interaction dynamics with the host's immune system.↵↵Understanding the specific ecological roles of *Candidatus Hamiltonella defensa* strain A2C could provide insights into the intricate relationships between microbes and their hosts, highlighting the importance of microbial symbionts in shaping host resilience and adaptability in changing environments. This underscores the potential significance of studying such symbiotic relationships in the context of ecological balance and biodiversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens Negative Rod Mesophilic HostAssociated Symbiotic 138072 NZ_CP017607.1 Bac0016339 Candidatus Hamiltonella defensa strain ZA17 "*Candidatus Hamiltonella defensa* strain ZA17 is a Gram-negative, rod-shaped bacterium that is predominantly associated with host organisms. This microbe is part of a complex ecological relationship, often inhabiting the internal environments of its hosts. The Gram-negative nature of *Candidatus Hamiltonella defensa* strain ZA17 suggests that it possesses an outer membrane that may contribute to its interactions with the host's immune system and overall physiology. ↵↵The rod shape of this bacterium facilitates motility and may influence its colonization efficiency within host tissues. While specific details regarding its metabolic capabilities, pathogenicity, or interactions with host immune responses are not provided, the association of this strain with host organisms indicates a potential role in symbiotic or parasitic relationships.↵↵Given its host-associated habitat, *Candidatus Hamiltonella defensa* strain ZA17 may play a significant role in shaping the microbial communities within its host, potentially influencing the host's health and resilience to environmental stressors. This relationship underscores the importance of understanding the dynamics between host-associated microbes and their hosts, particularly in terms of mutualistic or antagonistic interactions that could affect host fitness and survival. Further investigation into the specific ecological roles and interactions of *Candidatus Hamiltonella defensa* strain ZA17 within its host environments may yield insights into the complexities of host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens Negative Rod Mesophilic HostAssociated Symbiotic 138072 NZ_CP017614.1 Bac0016340 Escherichia coli strain SLK172 "Escherichia coli strain SLK172 is a Gram-negative, rod-shaped bacterium that typically exhibits cell arrangements in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated environments. E. coli is classified as a facultative anaerobe, allowing it to utilize both aerobic and anaerobic metabolic pathways, thereby enhancing its survival in diverse conditions within host organisms.↵↵The ability of E. coli strain SLK172 to exist in pairs and singles may reflect its physiological adaptations for nutrient acquisition and interaction within the host microbiome. Its Gram-negative cell wall structure contributes to its resilience and adaptability in various environments, particularly those within the gastrointestinal tract of mammals, where it is commonly found.↵↵Given its optimal growth temperature and habitat, strain SLK172 likely plays a role in the complex microbial communities associated with the gastrointestinal systems of its hosts. This suggests that E. coli strain SLK172 may contribute to metabolic processes such as fermentation and nutrient cycling, which are essential for host health and homeostasis. Further research into this strain could provide insights into its specific interactions within the microbial ecosystem and its potential roles in host metabolism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP017632.1 Bac0016341 Bradyrhizobium japonicum strain J5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium japonicum soybean fields 375 NZ_CP017637.1 Bac0016342 Streptococcus suis strain 1081 "Streptococcus suis strain 1081 is a Gram-positive bacterium characterized by its cocci shape and diverse cell arrangement, which can occur in chains, pairs, or as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to warm-blooded hosts, which is typical for many members of the Streptococcus genus. As a facultative anaerobe, S. suis strain 1081 is capable of growing in both aerobic and anaerobic environments, allowing it to exploit a variety of ecological niches within its specialized habitat.↵↵The unique combination of traits observed in S. suis strain 1081 suggests its potential versatility in different ecological contexts, including its ability to survive and proliferate in conditions where oxygen levels fluctuate. This adaptability might enable it to colonize specific niches within host organisms or environments where other bacteria may struggle. Understanding the ecological role of S. suis strain 1081 further enhances our knowledge of its interactions within microbial communities and its potential implications in health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP017667.1 Bac0016343 Escherichia coli O157:H7 strain PA20 "Escherichia coli O157:H7 strain PA20 is a Gram-negative bacterium characterized by its rod-shaped morphology and common cellular arrangement in pairs or singles. This strain thrives optimally at 37.0°C, which coincides with the average body temperature of warm-blooded hosts, highlighting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli O157:H7 strain PA20 can grow in both the presence and absence of oxygen, allowing it to exploit a variety of environments within the host. ↵↵The ability to exist in diverse oxygen conditions may contribute to its metabolic versatility and potential survival strategies within different tissues or microenvironments. This adaptability might play a crucial role in its interactions with host organisms, where it can occupy niches that either limit or enhance its growth depending on the local oxygen availability. Understanding these traits can provide insights into the ecological dynamics of E. coli O157:H7 strain PA20 and its potential roles within host systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 83334 NZ_CP017670.1 Bac0016344 Gloeomargarita lithophora Alchichica-D10 Bacillati Cyanobacteriota Cyanophyceae Gloeomargaritales Gloeomargaritaceae Gloeomargarita Gloeomargarita lithophora 1188229 NZ_CP017675.1 Bac0016345 Methanomethylophilus alvi strain Mx-05 Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus alvi No 1 Chemoheterotroph Mesophilic Host Gut Nonsporulating 1291540 NZ_CP017686.1 Bac0016346 Geobacillus lituanicus strain N-3 "Geobacillus lituanicus strain N-3 is a Gram-positive, rod-shaped bacterium known for its ability to form spores and thrive in high-temperature environments, specifically oilfields. This strain exhibits optimal growth at 45.0°C, making it well-suited for thermophilic habitats where it can utilize organic compounds as an energy source, classifying it as an organotroph and chemotroph. As an aerobic organism, G. lituanicus strain N-3 requires oxygen for growth, which underscores its adaptation to the aerobic conditions often present in its natural habitat.↵↵The ability to sporulate is a significant survival strategy for G. lituanicus strain N-3, allowing it to withstand extreme environmental conditions that would be detrimental to many other microorganisms. This trait is particularly advantageous in high-temperature oilfields, where fluctuations in temperature and nutrient availability may occur. Additionally, the presence of this bacterium in such specialized habitats suggests it may play a role in the biogeochemical cycling of organic materials in extreme environments.↵↵The adaptability of G. lituanicus strain N-3 not only highlights its potential biotechnological applications in processes such as bioremediation and bioenergy production but also points to the complexity of microbial communities in high-temperature environments, where thermophiles like this strain may interact with other microorganisms to influence nutrient dynamics and energy flow." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus lituanicus Gram-positive rod motile aerobic 45 organotroph; chemotroph thermophilic High-temperature oilfield spore-forming 169283 NZ_CP017692.1 Bac0016347 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC "Loigolactobacillus coryniformis subsp. torquens DSM 20004 (= KCTC) is a rod-shaped, lactic acid bacterium recognized for its contribution to fermentation processes. As a member of the genus Loigolactobacillus, this subspecies is characterized by its ability to produce lactic acid, a key metabolite in various food fermentation applications. The rod shape of L. coryniformis subsp. torquens is indicative of its morphological classification within the Lactobacillaceae family, which typically includes organisms with similar characteristics that play significant roles in both food preservation and human health.↵↵This strain has been isolated and deposited in culture collections, such as DSM and KCTC, indicating its potential utility in research and industrial applications. The unique properties of L. coryniformis subsp. torquens may offer advantages in the development of novel fermented products, particularly those that require specific flavor profiles or enhanced probiotic qualities.↵↵Interestingly, the rod shape of this bacterium may influence its interaction with other microbial communities during fermentation, potentially affecting the overall dynamics and stability of the microbiota in fermented foods. This suggests that further research into the ecological roles of L. coryniformis subsp. torquens could reveal insights into optimizing fermentation processes and enhancing the sensory attributes of fermented products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus coryniformis Rod 1423822 NZ_CP017697.1 Bac0016348 Moorena producens JHB Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Moorena Moorena producens 1454205 NZ_CP017708.2 Bac0016349 Marinobacter salinus strain Hb8 "Marinobacter salinus strain Hb8 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and has an optimal growth temperature of 37.0°C. As a non-spore-forming organism, strain Hb8 relies on other survival mechanisms in response to environmental stressors rather than sporulation. ↵↵The Gram-negative nature of this strain suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this group of bacteria. This structural feature may contribute to its adaptability in various environments, including marine habitats where it may be isolated. The aerobic requirement indicates that strain Hb8 metabolizes organic compounds in the presence of oxygen, which may influence its role in biogeochemical cycles, particularly in the degradation of organic materials in oxygen-rich aquatic ecosystems.↵↵The specific growth temperature of 37.0°C aligns with the typical range for many mesophilic microorganisms, suggesting that Marinobacter salinus strain Hb8 may thrive in environments that experience moderate thermal conditions, potentially including warm coastal waters. Further exploration of the ecological roles of this strain could reveal its contributions to nutrient cycling and energy flow in marine ecosystems, highlighting its potential importance in maintaining ecological balance in its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter salinus Gram-negative rod motile aerobic 37 mesophilic non-spore-forming 1874317 NZ_CP017715.1 Bac0016350 Cupriavidus necator strain NH9 "Cupriavidus necator strain NH9 is a Gram-negative, rod-shaped bacterium that exhibits both heterotrophic and chemoautotrophic metabolic capabilities, allowing it to utilize a variety of organic and inorganic substrates for energy. This strain thrives optimally at a temperature of 30.0°C, which indicates a preference for moderate environmental conditions.↵↵As a facultative aerobe, Cupriavidus necator strain NH9 can adapt to varying oxygen levels, enabling it to thrive in specialized habitats where oxygen availability may fluctuate. The versatility in energy acquisition and oxygen requirement suggests that this strain may play a significant role in biogeochemical cycles, particularly in environments where organic compounds are present alongside inorganic sources of energy.↵↵The unique metabolic flexibility of Cupriavidus necator strain NH9 positions it as an interesting candidate for biotechnological applications, particularly in the realms of bioremediation and bioenergy production. Its ability to adapt to specialized habitats enhances the potential for this strain to contribute to microbial processes in diverse ecological niches, potentially influencing nutrient cycling and the dynamics of microbial communities in its native environment." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus necator Negative Rod Yes 1 2 Facultative aerobe 30 Heterotroph - Chemoautotroph Mesophilic Specialized Free living 106590 NZ_CP017760.1 Bac0016351 Rhodobacter xanthinilyticus strain LPB0142 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter xanthinilyticus 1850250 NZ_CP017781.1 Bac0016352 Boudabousia tangfeifanii strain VUL4_3 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Boudabousia Boudabousia tangfeifanii 1912795 NZ_CP017812.1 Bac0016353 Mycoplasmopsis pullorum strain B359_6 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pullorum 48003 NZ_CP017813.1 Bac0016354 Butyrivibrio hungatei strain MB2003 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio hungatei rumen 185008 NZ_CP017831.1 Bac0016355 Silvanigrella aquatica strain MWH-Nonnen-W8red Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella aquatica 1915309 NZ_CP017834.1 Bac0016356 Pseudomonas frederiksbergensis strain ERDD5:01 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 NZ_CP017887.1 Bac0016357 Vibrio alginolyticus strain K06K5 "Vibrio alginolyticus strain K06K5 is a Gram-negative, facultative anaerobic bacterium that thrives in marine environments, with an optimal growth temperature of 30.0 °C. This strain is part of the Vibrio genus, which is characterized by its curved rod shape and motility due to a single polar flagellum. The marine habitat of V. alginolyticus suggests that it may play a role in the decomposition of organic matter in coastal ecosystems, contributing to nutrient cycling in these environments. Its facultative anaerobic nature allows it to adapt to varying oxygen levels, which is advantageous in dynamic marine settings where oxygen availability can fluctuate. ↵↵Moreover, the optimal growth temperature of 30.0 °C indicates that strain K06K5 is well-suited for warm marine waters, potentially influencing its distribution and ecological interactions. Understanding the traits of this strain can provide insights into its role within the microbial community, particularly in relation to its metabolic capabilities and ecological functions in marine ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus negative Yes facultative anaerobe 30 Marine 663 NZ_CP017907.1 Bac0016358 Vibrio syngnathi strain K08M4 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio syngnathi 3034029 NZ_CP017916.1 Bac0016359 Klebsiella oxytoca strain CAV1015 "Klebsiella oxytoca strain CAV1015 is a Gram-negative, non-sporulating rod-shaped bacterium that thrives optimally at 37.0°C. As a chemoheterotroph, this strain utilizes organic compounds as its energy source, which suggests a versatile metabolic capability that allows it to adapt to various nutrient environments. Its facultative anaerobic nature indicates that K. oxytoca strain CAV1015 can grow in both the presence and absence of oxygen, enabling it to inhabit diverse ecological niches.↵↵The ability to thrive in multiple habitats points to the strain's potential adaptability and resilience, likely contributing to its survival in fluctuating environmental conditions. This trait may facilitate its presence in human-associated environments, as well as natural ecosystems, where it could play roles in nutrient cycling and microbial community dynamics. Understanding the specific ecological roles and interactions of K. oxytoca strain CAV1015 could provide insights into its contributions to microbiomes in various contexts, underscoring the importance of studying such bacteria in both environmental and clinical microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 NZ_CP017928.1 Bac0016360 Lactobacillus helveticus strain LH99 "Lactobacillus helveticus strain LH99 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Lactobacillus helveticus is often found in diverse habitats, suggesting a versatile ecological niche that may include fermented dairy products and other food matrices.↵↵The facultative anaerobic nature of L. helveticus strain LH99 allows it to adapt to varying oxygen levels, which is a significant advantage in environments where oxygen availability fluctuates. This adaptability may contribute to its role in food fermentation processes, where oxygen levels can be limited. ↵↵Moreover, the chain arrangement of this bacterium may enhance its ability to interact with substrates and other microbial communities, potentially influencing fermentation dynamics and flavor development in dairy products. The ecological versatility and metabolic adaptability of Lactobacillus helveticus strain LH99 underscore its importance in fermentation technology and food microbiology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 NZ_CP017982.1 Bac0016361 Companilactobacillus crustorum strain MN047 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus crustorum 392416 NZ_CP017997.1 Bac0016362 Kosakonia radicincitans DSM 16656 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia radicincitans 1177180 NZ_CP018017.1 Bac0016363 Mycobacterium sp. WY10 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. WY10 1920667 NZ_CP018043.1 Bac0016364 Bifidobacterium choerinum strain FMB-1 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium choerinum 35760 NZ_CP018044.1 Bac0016365 Stutzerimonas stutzeri strain KGS-8 "Stutzerimonas stutzeri strain KGS-8 is a Gram-negative, rod-shaped bacterium that exists as single cells and thrives in host-associated environments. As a heterotroph, this microbe relies on organic compounds for its energy needs, showcasing its adaptability to nutrient-rich habitats provided by associated hosts. Additionally, Stutzerimonas stutzeri strain KGS-8 is classified as an aerobe, indicating that it requires oxygen for survival and growth, which may influence its metabolic processes and ecological interactions.↵↵The specific habitat of strain KGS-8 suggests a potential role in the microbiomes of various organisms, although further research is needed to elucidate its precise ecological functions and interactions within these environments. Its aerobic nature may contribute to the degradation of organic matter in host-associated ecosystems, potentially impacting nutrient cycling. Understanding the characteristics and behaviors of Stutzerimonas stutzeri strain KGS-8 can provide insights into the microbial diversity present in host-associated habitats and their contributions to the overall health and functioning of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NZ_CP018046.1 Bac0016366 Enterococcus mundtii strain DSM 4838 "Enterococcus mundtii strain DSM 4838 is a Gram-positive, nonsporulating coccus classified within the Enterococcus genus, exhibiting facultative anaerobic metabolism and chemoheterotrophic energy acquisition. This strain thrives optimally at 37.0°C, which is consistent with the typical human body temperature, suggesting a potential association with warm-blooded hosts or environments similar to those found in mammalian systems.↵↵Enterococcus mundtii is known for its adaptability to various habitats, reflecting a versatile ecological niche. Its facultative anaerobic nature enables it to survive and grow in both aerobic and anaerobic conditions, which may contribute to its presence in diverse environments, including those associated with human and animal microbiomes. The strain's ability to utilize organic compounds as a carbon source further underscores its metabolic flexibility.↵↵This adaptability and metabolic versatility may play a significant role in its ecological interactions, particularly in nutrient cycling within microbial communities. As a member of the gut microbiota, Enterococcus mundtii strain DSM 4838 could contribute to the fermentation processes and overall homeostasis of the gastrointestinal environment, highlighting its potential importance in maintaining gut health and influencing microbial dynamics. Further studies could elucidate its specific interactions within these communities and its potential applications in biotechnology or probiotic development." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus mundtii positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 53346 NZ_CP018062.1 Bac0016367 Sulfitobacter alexandrii strain AM1-D1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter alexandrii 1917485 NZ_CP018077.1 Bac0016368 Synechococcus sp. SynAce01 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. SynAce01 1916956 NZ_CP018091.1 Bac0016369 Aurantiacibacter gangjinensis strain JCM 15420 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter gangjinensis 502682 NZ_CP018097.1 Bac0016370 Neomicrococcus aestuarii strain B18 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Neomicrococcus Neomicrococcus aestuarii 556325 NZ_CP018135.1 Bac0016371 Halomonas aestuarii strain Hb3 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas aestuarii 1897729 NZ_CP018139.1 Bac0016372 Sphingorhabdus lutea strain LPB0140 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Sphingorhabdus Sphingorhabdus lutea 1913578 NZ_CP018154.1 Bac0016373 Tenacibaculum todarodis strain LPB0136 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum todarodis 1850252 NZ_CP018155.1 Bac0016374 Aquibium oceanicum strain B7 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aquibium Aquibium oceanicum 1670800 NZ_CP018171.1 Bac0016375 Granulibacter bethesdensis strain NIH8.1 "Granulibacter bethesdensis strain NIH8.1 is a Gram-negative, rod-shaped bacterium that has been isolated from a variety of habitats. This strain exhibits characteristics typical of the Granulibacter genus, which includes notable metabolic and physiological traits that allow it to thrive in diverse environments. The rod shape of G. bethesdensis may contribute to its adaptability and survival in varied ecological niches, although specific metabolic pathways and ecological interactions remain to be fully elucidated.↵↵The habitat diversity of Granulibacter bethesdensis strain NIH8.1 suggests that it may possess a versatile physiology, enabling it to exploit different resources and conditions. This adaptability could facilitate its presence in environments characterized by varying nutrient availability and physical conditions. Understanding the ecological role of this strain may provide insights into its interactions with other microorganisms and its contributions to biogeochemical cycles.↵↵In conclusion, Granulibacter bethesdensis strain NIH8.1 stands as an interesting subject for further research, particularly regarding its potential role in microbial communities across multiple habitats. The study of this strain may enhance our understanding of microbial diversity and adaptability in complex ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Granulibacter Granulibacter bethesdensis Negative Rod No 1 2 Mesophilic Multiple Free living 364410 NZ_CP018194.1 Bac0016376 Lactobacillus delbrueckii subsp. lactis strain KCCM 34717 "Lactobacillus delbrueckii subsp. lactis strain KCCM 34717 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 42.0°C, indicating its preference for relatively high-temperature environments. ↵↵L. delbrueckii subsp. lactis is known to inhabit a variety of ecological niches, which may include dairy products and fermented foods, where it contributes to the fermentation process. The ability to grow in both aerobic and anaerobic conditions allows this strain to adapt to fluctuating environmental oxygen levels, enhancing its survival and metabolic versatility in diverse habitats.↵↵This strain's specific adaptation to higher temperatures may provide insights into its potential applications in industrial fermentation processes, particularly in the production of yogurt and other dairy-based products, where temperature control is crucial. Understanding the physiological and ecological traits of KCCM 34717 could further inform its role in food microbiology and its contributions to the development of probiotic products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 29397 NZ_CP018215.1 Bac0016377 Salmonella enterica subsp. enterica strain LSP 389/97 "Salmonella enterica subsp. enterica strain LSP 389/97 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This strain thrives optimally at 37.0°C, which aligns with the typical temperature of the mammalian host environment. As a chemoorganotroph, it utilizes organic compounds as its energy source, indicating a reliance on host-associated substrates for growth and metabolism.↵↵The microaerophilic nature of this strain suggests that it requires reduced levels of oxygen for optimal growth, which may be reflective of its adaptation to specific niches within a host organism, where oxygen concentrations can be limited. This adaptation could play a crucial role in its survival and potential interactions within the host environment.↵↵Understanding the ecological role of S. enterica subsp. enterica strain LSP 389/97 may provide insights into its metabolic pathways and interactions with host organisms, particularly in relation to nutrient acquisition and competition with other microbial flora. Such knowledge could be pivotal for comprehending the broader implications of this strain in microbial ecology and its potential impacts on host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59201 NZ_CP018219.1 Bac0016378 Rhizobium leguminosarum strain Vaf-108 "Rhizobium leguminosarum strain Vaf-108 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain exhibits a chemoheterotrophic mode of metabolism, utilizing organic compounds as its energy source, which is typical for many soil-dwelling bacteria. As an aerobic microbe, R. leguminosarum strain Vaf-108 requires oxygen for its metabolic processes, suggesting its prevalence in well-aerated soil environments.↵↵This strain is part of a broader group of Rhizobia known for their symbiotic relationships with legumes, facilitating nitrogen fixation. While specific symbiotic capabilities of strain Vaf-108 are not detailed here, its classification within the Rhizobium genus indicates a potential role in enhancing soil fertility through nitrogen assimilation. The habitat in which R. leguminosarum strain Vaf-108 is found, namely soil, supports its ecological function in nutrient cycling and plant growth promotion.↵↵The ability of this strain to thrive in aerobic conditions while engaging in chemoheterotrophy highlights its adaptability to soil microenvironments, where organic substrates are often variable. This adaptability may contribute to the strain's ecological significance in supporting plant health in agricultural systems, particularly in legume cultivation, where it could play a role in sustainable farming practices through improved nitrogen availability." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP018231.1 Bac0016379 Photobacterium damselae strain Phdp Wu-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae mesophilic 38293 NZ_CP018297.1 Bac0016380 Vibrio mediterranei strain QT6D1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mediterranei 689 NZ_CP018308.1 Bac0016381 Clostridium kluyveri strain JZZ "Clostridium kluyveri strain JZZ is a Gram-positive, rod-shaped bacterium that primarily exists in aquatic environments and exhibits an anaerobic lifestyle. This strain displays a characteristic arrangement of cells, appearing as singles or in pairs. As a chemoorganotroph, C. kluyveri strain JZZ utilizes organic compounds as its energy source, which underscores its role in the degradation of organic matter within its aquatic habitat.↵↵The anaerobic nature of this microbe suggests a significant ecological role, particularly in environments where oxygen is limited or absent, such as sediment layers or other anoxic zones in aquatic ecosystems. The ability of C. kluyveri strain JZZ to thrive in such conditions may contribute to biogeochemical cycles by facilitating the breakdown of complex organic substances, potentially influencing nutrient cycling and energy flow in its habitat.↵↵Furthermore, the presence of this strain in aquatic systems could indicate the capacity for interactions with other microbial communities, potentially leading to collaborative or competitive dynamics that shape community structure and function. Overall, C. kluyveri strain JZZ exemplifies the complexity of microbial life in anaerobic aquatic environments and highlights the intricate relationships that exist within these ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium kluyveri Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Aquatic Free living Pairs - Singles 1534 NZ_CP018336.1 Bac0016382 Prochlorococcus sp. RS01 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. RS01 1924286 NZ_CP018345.1 Bac0016383 Burkholderia pseudomallei strain 2008724734 "Burkholderia pseudomallei strain 2008724734 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits an aerobic metabolism. This strain is part of a genus known for its versatile ecological adaptability, primarily inhabiting soil and water, where it can persist in various environmental conditions.↵↵As a member of the Burkholderia genus, strain 2008724734 is characterized by its motility, which is typical for many of its relatives, allowing it to navigate through its terrestrial habitat. The organism's aerobic requirement indicates that it relies on oxygen for its metabolic processes, distinguishing it from anaerobic bacteria that can thrive in oxygen-depleted environments. ↵↵The ecological role of Burkholderia pseudomallei strain 2008724734 in its terrestrial habitat may involve interactions with other soil microorganisms, influencing nutrient cycling and potentially contributing to the degradation of organic matter. This strain's ability to survive in diverse environments underscores its ecological significance and adaptability, making it a subject of interest for further studies on microbial ecology and environmental microbiology. Understanding the traits of this strain can contribute to broader insights into the dynamics of microbial communities in terrestrial ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 28450 NZ_CP018380.1 Bac0016384 Xanthomonas vesicatoria strain LM159 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vesicatoria 56460 NZ_CP018468.1 Bac0016385 Xanthomonas perforans strain LH3 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas perforans 442694 NZ_CP018475.1 Bac0016386 Thermogutta terrifontis strain R1 Pseudomonadati Planctomycetota Planctomycetia Pirellulales Thermoguttaceae Thermogutta Thermogutta terrifontis 1331910 NZ_CP018477.1 Bac0016387 Paenibacillus xylanexedens strain PAMC 22703 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus xylanexedens 528191 NZ_CP018620.1 Bac0016388 Streptomyces hygroscopicus strain XM201 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hygroscopicus 1912 NZ_CP018627.1 Bac0016389 Xanthomonas hortorum pv. gardneri strain ICMP 7383 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hortorum 2754056 NZ_CP018733.1 Bac0016390 Pseudomonas putida strain DRA525 "Pseudomonas putida strain DRA525 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is nonsporulating. This strain is classified as a heterotroph, utilizing organic compounds as its energy source. It thrives in soil and wastewater environments, reflecting its adaptability to diverse ecological niches. P. putida strains, including DRA525, are facultative anaerobes, allowing them to grow in both the presence and absence of oxygen, which may enhance their survival in fluctuating environmental conditions.↵↵The metabolic versatility of Pseudomonas putida strain DRA525 suggests its potential role in bioremediation processes, where it may contribute to the degradation of organic pollutants in contaminated environments. The strain's ability to utilize various substrates in soil and wastewater habitats underscores its importance in nutrient cycling and the maintenance of ecosystem health. This adaptability and functional plasticity may provide insights into the mechanisms by which P. putida strains can be harnessed for environmental applications, particularly in the context of wastewater treatment and soil rehabilitation." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP018743.1 Bac0016391 Microbacterium aurum strain KACC 15219 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium aurum microaerophile 29 mesophilic 36805 NZ_CP018762.1 Bac0016392 Mariprofundus aestuarium strain CP-5 Pseudomonadati Pseudomonadota Candidatius Mariprofundia Mariprofundales Mariprofundaceae Mariprofundus Mariprofundus aestuarium 1921086 NZ_CP018799.1 Bac0016393 Mariprofundus ferrinatatus strain CP-8 Pseudomonadati Pseudomonadota Candidatius Mariprofundia Mariprofundales Mariprofundaceae Mariprofundus Mariprofundus ferrinatatus 1921087 NZ_CP018800.1 Bac0016394 Histophilus somni strain USDA-ARS-USMARC-63255 "Histophilus somni strain USDA-ARS-USMARC-63255 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic metabolic capabilities. This strain thrives optimally at a temperature of 35.0°C, suggesting a preference for warm-blooded hosts within its ecological niche. ↵↵As a host-associated microbe, H. somni is typically found in the respiratory and reproductive tracts of its hosts, indicating its possible role in the microbial communities associated with these environments. The dual oxygen requirement of this strain allows it to adapt to varying oxygen levels within its host, which may facilitate its persistence in diverse anatomical sites. ↵↵The adaptation to host-associated habitats and the ability to function in both aerobic and anaerobic conditions may provide insights into its metabolic versatility and ecological interactions within the host environment. Understanding these traits is crucial for further investigations into the ecological roles and potential impacts of H. somni in its host's microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 731 NZ_CP018803.1 Bac0016395 Helicobacter pylori PMSS1 "Helicobacter pylori PMSS1 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at 37.0°C, which aligns with the human body temperature, suggesting its adaptation to a host-associated habitat. H. pylori is commonly found in the gastric mucosa of humans and is notable for its ability to survive in the acidic environment of the stomach. ↵↵The microaerophilic nature of H. pylori PMSS1 indicates that it requires reduced levels of oxygen for growth, which is typical for many bacteria residing in the gastrointestinal tract. This adaptation may play a crucial role in its survival and colonization of the gastric epithelium, where oxygen levels are lower than in the external environment. ↵↵Furthermore, the solitary arrangement of H. pylori PMSS1 cells may influence its motility and colonization strategies within the host, as individual cells can navigate through the viscous mucus layer of the stomach lining. Understanding the traits of H. pylori PMSS1, including its morphological characteristics and growth requirements, provides insight into its ecological niche as a commensal organism that may contribute to the complex interplay of microorganisms in the human gut." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles 1431450 NZ_CP018823.1 Bac0016396 Vibrio gazogenes strain ATCC 43942 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gazogenes estuarine; estuarine marshes; Marine; marine biofilms; saline environments 687 NZ_CP018835.1 Bac0016397 Sutcliffiella cohnii strain DSM 6307 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Sutcliffiella Sutcliffiella cohnii 33932 NZ_CP018866.1 Bac0016398 Companilactobacillus alimentarius DSM 20249 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus alimentarius 1423720 NZ_CP018867.1 Bac0016399 Acinetobacter haemolyticus strain TJS01 "Acinetobacter haemolyticus strain TJS01 is a Gram-negative, aerobic bacterium that exhibits notable metabolic characteristics. As a member of the Acinetobacter genus, this strain is distinguished by its ability to thrive in oxygen-rich environments, which is a defining trait of aerobic organisms. The Gram-negative classification indicates that the strain possesses a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that influences its interactions with the surrounding environment and its responses to various antimicrobial agents.↵↵While specific pathogenicity data for Acinetobacter haemolyticus strain TJS01 is not provided, the genus Acinetobacter is known for its environmental resilience and potential clinical significance. The aerobic nature of strain TJS01 suggests that it may play a role in biogeochemical cycles within oxygenated habitats, potentially contributing to nutrient cycling in soil or aquatic ecosystems. ↵↵Furthermore, the presence of this strain in specific ecological niches may indicate its adaptation to particular environmental conditions, which could be essential for understanding its role in microbial communities. Future studies could elucidate the metabolic pathways and ecological interactions of Acinetobacter haemolyticus strain TJS01, providing insights into its functional significance within diverse environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 NZ_CP018872.1 Bac0016400 Beggiatoa leptomitoformis strain D-401 "Beggiatoa leptomitoformis strain D-401 is a Gram-negative, autotrophic microorganism that thrives optimally at a temperature of 29.0°C. This strain is notable for its versatility in energy metabolism, functioning as both a lithotroph and chemotroph. As an autotroph, it utilizes inorganic compounds for carbon fixation, a trait that enables it to play a significant role in biogeochemical cycles, particularly in environments rich in hydrogen sulfide.↵↵The ability of strain D-401 to metabolize various inorganic substrates suggests its potential contributions to nutrient cycling in sulfide-rich habitats, such as marine sediments or hydrothermal vent systems. The organism’s metabolic flexibility allows it to adapt to fluctuating environmental conditions and utilize available resources efficiently. ↵↵Understanding the characteristics of Beggiatoa leptomitoformis strain D-401 may provide insights into microbial community dynamics and the ecological roles of sulfur-oxidizing bacteria in their respective environments. The strain's unique metabolic capabilities highlight the importance of such microorganisms in maintaining ecosystem health and facilitating energy flow in extreme conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Beggiatoa Beggiatoa leptomitoformis Gram-negative 29 autotroph; lithotroph; chemotroph mesophilic 288004 NZ_CP018889.2 Bac0016401 Lentilactobacillus curieae strain CCTCC M 2011381 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus curieae 1138822 NZ_CP018906.1 Bac0016402 Serratia marcescens strain UMH5 "Serratia marcescens strain UMH5 is a Gram-negative, nonsporulating, rod-shaped bacterium that thrives optimally at 37.0°C. As a facultative anaerobe, this strain can utilize both aerobic and anaerobic metabolic pathways, allowing it to adapt to various environmental conditions. Its classification as a chemoheterotroph indicates that it derives energy from organic compounds, highlighting its versatile metabolic capabilities.↵↵This strain has been isolated from multiple habitats, suggesting a broad ecological distribution. The ability of S. marcescens UMH5 to survive in diverse environments could be attributed to its metabolic flexibility and oxygen utilization strategies, making it well-suited for colonization in both oxygen-rich and oxygen-poor niches.↵↵The ecological implications of S. marcescens UMH5 are noteworthy; its presence in varied habitats may play a role in biogeochemical cycles, particularly in the degradation of organic matter. This adaptability not only underscores its ecological significance but also suggests potential applications in bioremediation processes, where such metabolic versatility may facilitate the breakdown of pollutants in different environmental contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 NZ_CP018917.1 Bac0016403 Bacteroides fragilis strain Q1F2 "Bacteroides fragilis strain Q1F2 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells. This strain thrives optimally at a temperature of 37.0°C, indicative of its adaptation to host-associated environments, such as the human gastrointestinal tract. As a chemoorganotroph, B. fragilis strain Q1F2 utilizes organic compounds as its energy source, reflecting its specialized metabolic capabilities within nutrient-rich host environments. ↵↵An important characteristic of this strain is its strict anaerobic nature, meaning it requires an oxygen-free environment for optimal growth and survival. This trait aligns with its typical habitat, where oxygen levels are low, thereby allowing it to flourish in the absence of oxygen. The anaerobic lifestyle of B. fragilis strain Q1F2 is significant in understanding its ecological role within the gut microbiome, where it may contribute to nutrient cycling and the maintenance of gut health. ↵↵In summary, Bacteroides fragilis strain Q1F2 exemplifies the adaptations of certain gut-dwelling microbes to thrive in anaerobic, host-associated niches, underscoring its potential importance in influencing host metabolism and overall microbiome dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 NZ_CP018937.1 Bac0016404 Escherichia coli strain Ecol_316 "Escherichia coli strain Ecol_316 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Ecol_316 exhibits optimal growth at 37.0°C, a temperature consistent with the physiological conditions of many host organisms, suggesting its ecological adaptation to host-associated habitats. ↵↵As a member of the Enterobacteriaceae family, Ecol_316 likely plays a role in the complex microbial communities found within the gastrointestinal tracts of various hosts. The ability to grow in pairs or as single cells may facilitate its interactions within these communities, allowing for cooperation or competition with other microbial species. The facultative anaerobic metabolism of Ecol_316 enables it to adapt to fluctuating oxygen levels within the host environment, potentially influencing its survival and proliferation under different physiological conditions.↵↵Further exploration of the ecological roles of E. coli strain Ecol_316 in host-associated habitats could provide insights into its contributions to microbial diversity and function within the gut microbiome, as well as its potential interactions with host physiology. Understanding these dynamics could inform broader studies on microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP018954.1 Bac0016405 Klebsiella pneumoniae subsp. pneumoniae strain RJA166 "Klebsiella pneumoniae subsp. pneumoniae strain RJA166 is a nonsporulating, Gram-negative rod bacterium that exhibits a diverse cell arrangement, occurring in chains, pairs, and singles. This strain is classified as a chemoheterotroph, utilizing organic compounds as its energy source, which aligns with its typical habitat in host-associated environments. RJA166 thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of many mammalian hosts.↵↵As a facultative anaerobe, K. pneumoniae subsp. pneumoniae strain RJA166 is capable of surviving in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels present in host tissues and environments. The ability to flourish in different oxygen states may contribute to its survival and persistence in diverse biological niches.↵↵The ecology of K. pneumoniae, including strain RJA166, underscores its role in the microbiota of the human body, where it can exist as a commensal organism while having the potential to become pathogenic under certain conditions. Understanding the traits of this strain sheds light on its adaptability and the ecological dynamics it may engage in within host-associated environments, particularly in relation to nutrient utilization and oxygen availability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 NZ_CP019047.1 Bac0016406 Escherichia coli strain CRE1540 "Escherichia coli strain CRE1540 is a Gram-negative, rod-shaped bacterium, commonly found in pairs or as single cells, that thrives at an optimal temperature of 37.0°C. This strain is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, which is a typical characteristic of many E. coli strains. ↵↵E. coli CRE1540 is host-associated, indicating a close relationship with its host organism, likely residing within the gastrointestinal tract, where it plays a role in nutrient metabolism and microbial community dynamics. The ability to adapt to varying oxygen levels enables this strain to exploit different ecological niches within the host environment, promoting its survival and proliferation.↵↵The physiological traits of E. coli CRE1540 suggest that it may participate in complex interactions within the gut microbiome, potentially influencing host health and digestion through its metabolic activities. Understanding the specific roles and behaviors of this strain within its host-associated habitat could provide insights into microbial ecology and the functional diversity of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP019052.1 Bac0016407 Gardnerella swidsinskii strain GV37 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella swidsinskii 2792979 NZ_CP019058.1 Bac0016408 Rahnella sikkimica strain ERMR1:05 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rahnella Rahnella sikkimica 1805933 NZ_CP019062.1 Bac0016409 Poseidonibacter parvus strain LPB0137 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter parvus 1850254 NZ_CP019070.1 Bac0016410 Brevirhabdus pacifica strain DY6-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Brevirhabdus Brevirhabdus pacifica 1267768 NZ_CP019124.1 Bac0016411 Haloarcula taiwanensis strain Taiwanensis Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula taiwanensis 1932004 NZ_CP019154.1 Bac0016412 Betaproteobacteria bacterium GR16-43 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium GR16-43 1904640 NZ_CP019169.1 Bac0016413 Mycobacterium intracellulare subsp. chimaera strain CDC 2015-22-71 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 222805 NZ_CP019223.1 Bac0016414 Rhodoferax koreense strain DCY-110 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax koreensis 1842727 NZ_CP019238.1 Bac0016415 Rhodoferax saidenbachensis strain DSM 22694 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax saidenbachensis aerobic 1484693 NZ_CP019239.1 Bac0016416 Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 "Prevotella intermedia ATCC 25611, also designated as DSM 20706, is a Gram-negative anaerobic bacterium recognized for its role in the human microbiome. This strain is part of the Prevotella genus, which is known to thrive in oxygen-free environments, contributing to various ecological niches within the body. As an anaerobe, P. intermedia is adapted to metabolize substrates through fermentation processes, allowing it to survive and proliferate in anaerobic conditions, such as those found in the oral cavity and gastrointestinal tract.↵↵The Gram-negative cell wall structure of P. intermedia, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, is significant for its interaction with the host and the immune system. This structural characteristic may influence its ecological interactions and the bacterium's overall stability in microbial communities.↵↵Prevotella intermedia ATCC 25611 is particularly notable for its potential involvement in the complex interplay between host health and microbial populations. Given its anaerobic nature and Gram-negative status, it may play a role in the fermentation of dietary fibers, thus contributing to the metabolic processes associated with gut health. Understanding the specific functions and interactions of P. intermedia within the microbiome could provide insights into its ecological contributions and potential implications for human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Anaerobe 1122984 NZ_CP019301.1 Bac0016417 Prevotella intermedia strain 17 "Prevotella intermedia strain 17 is a Gram-negative, rod-shaped bacterium characterized by its anaerobic metabolism. This microbe is predominantly found in various habitats, including the gingival sulci, oral cavity, gut, rumen, and both subgingival and supragingival dental biofilms, as well as the urogenital tract. Its ability to thrive in these diverse environments suggests a significant ecological role in both oral and gut microbiomes.↵↵As an anaerobe, Prevotella intermedia strain 17 relies on environments devoid of oxygen for its survival and growth, which is particularly relevant in the context of densely populated biofilms where oxygen levels are typically low. In the oral cavity, it may contribute to the complex interplay of microbial communities that influence oral health and disease. The presence of this strain in subgingival plaque indicates its potential involvement in periodontal health and disease, highlighting its relevance in the oral microbiome.↵↵Furthermore, the isolation of Prevotella intermedia strain 17 from the rumen suggests a potential role in the digestion of complex carbohydrates in ruminants, thus contributing to the understanding of microbial interactions within the digestive systems of these animals. The versatility of its habitat underscores its adaptability and significance in various ecological niches, pointing to the intricate relationships between host and microbiota that may influence health and disease outcomes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_CP019302.1 Bac0016418 Tateyamaria omphalii strain DOK1-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Tateyamaria Tateyamaria omphalii 299262 NZ_CP019313.1 Bac0016419 Methylorubrum extorquens strain PSBB040 "Methylorubrum extorquens strain PSBB040 is a Gram-negative, rod-shaped bacterium that exhibits a unique capacity for methylotrophy, utilizing methanol and other one-carbon compounds as its primary energy source. This strain is capable of existing in various habitats, which likely contributes to its ecological versatility. Cells of M. extorquens strain PSBB040 are typically found arranged in pairs or as singles, reflecting a possible adaptation to its environments.↵↵The optimal growth temperature for this strain is 25.0°C, indicating a preference for moderate conditions, which may influence its distribution in temperate habitats. As a facultative aerobe, M. extorquens strain PSBB040 can thrive in both aerobic and anaerobic conditions, allowing it to exploit a range of ecological niches where oxygen levels may fluctuate.↵↵The ability of Methylorubrum extorquens strain PSBB040 to metabolize methanol not only positions it as a significant player in carbon cycling within its environments but also highlights its potential role in biotechnological applications, such as bioremediation and the production of value-added compounds. This adaptability and metabolic flexibility underscore the ecological significance of this strain in microbial communities where one-carbon substrates are available." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum extorquens Negative Rod Yes 1 2 Facultative aerobe 25 Methylotroph Mesophilic Multiple Free living Pairs - Singles 408 NZ_CP019322.1 Bac0016420 Companilactobacillus allii strain WiKim39 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus allii 1847728 NZ_CP019323.1 Bac0016421 Halomonas sp. 1513 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. 1513 1883416 NZ_CP019326.1 Bac0016422 Natronorubrum daqingense strain JX313 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense 588898 NZ_CP019327.1 Bac0016423 Polaribacter sp. SA4-12 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. SA4-12 1312072 NZ_CP019334.1 Bac0016424 Tenacibaculum sp. SZ-18 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum sp. SZ-18 754423 NZ_CP019335.1 Bac0016425 Oceanicoccus sagamiensis strain NBRC 107125 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Oceanicoccus Oceanicoccus sagamiensis 716816 NZ_CP019343.1 Bac0016426 Candidatus Velamenicoccus archaeovorus strain LiM Pseudomonadati Candidatus Omnitrophota Candidatus Velamenicoccus Candidatus Velamenicoccus archaeovorus 1930593 NZ_CP019384.1 Bac0016427 Winogradskyella sp. J14-2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella sp. J14-2 1936080 NZ_CP019388.1 Bac0016428 Seonamhaeicola sp. S2-3 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Seonamhaeicola Seonamhaeicola sp. S2-3 1936081 NZ_CP019389.1 Bac0016429 Mycobacterium sp. MS1601 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. MS1601 1936029 NZ_CP019420.1 Bac0016430 Acidihalobacter ferrooxydans strain V8 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Acidihalobacter Acidihalobacter ferrooxydans 1765967 NZ_CP019434.1 Bac0016431 Streptomyces autolyticus strain CGMCC0516 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces malaysiensis 3455775 NZ_CP019458.1 Bac0016432 Bartonella sp. 1-1C Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella sp. 1-1C 515256 NZ_CP019489.1 Bac0016433 Brevundimonas sp. LM2 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. LM2 1938605 NZ_CP019508.1 Bac0016434 Janthinobacterium sp. LM6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. LM6 1938606 NZ_CP019510.1 Bac0016435 Sphingomonas sp. LM7 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. LM7 1938607 NZ_CP019511.1 Bac0016436 Enterococcus faecalis strain CLB21560 "Enterococcus faecalis strain CLB21560 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and is characterized as a chemoorganotroph, utilizing organic compounds for energy. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions found in warm-blooded hosts, suggesting a potential adaptability to mammalian environments.↵↵As a member of the Enterococcus genus, strain CLB21560 is part of a group known for its diverse habitats, which include various ecological niches such as the gastrointestinal tracts of animals and humans, as well as environmental sources like soil and water. The strain's facultative anaerobic nature allows it to survive and grow in both oxygen-rich and oxygen-poor environments, providing a competitive advantage in fluctuating ecological conditions.↵↵The metabolic versatility of Enterococcus faecalis strain CLB21560 may enable it to play a significant role in nutrient cycling within its various habitats. Its capacity to thrive in multiple environments highlights the adaptability of the species, which can influence microbial community dynamics and contribute to the overall ecosystem functionality. This adaptability may also underscore the importance of Enterococcus faecalis in studies related to microbial ecology and its interactions within diverse microbiomes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_CP019512.1 Bac0016437 Rhodococcus sp. MTM3W5.2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. MTM3W5.2 1805827 NZ_CP019572.1 Bac0016438 Lactobacillus helveticus strain LH5 "Lactobacillus helveticus strain LH5 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. L. helveticus is widely recognized for its versatility, inhabiting a variety of ecological niches, including dairy products and the gastrointestinal tracts of animals. ↵↵The ability to ferment lactose into lactic acid makes L. helveticus particularly valuable in food fermentation processes, contributing to the development of flavors and textures in products such as cheese and yogurt. The strain's capacity to adapt to different oxygen levels may enhance its survival and functional potential in diverse habitats, potentially influencing microbial dynamics in fermented foods and gut microbiomes.↵↵Moreover, the chain-forming characteristic of L. helveticus strain LH5 can be significant for its ecological interactions, as these arrangements may facilitate cell-to-cell communication and cooperation within microbial communities. This trait could contribute to the strain's resilience and functional capacities in various environments, including its role in competitive exclusion of pathogenic microorganisms in the gut and its utility in industrial fermentation processes. Such insights underline the importance of L. helveticus strain LH5 in both ecological and biotechnological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 NZ_CP019582.1 Bac0016439 Croceicoccus marinus strain E4A9 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Croceicoccus Croceicoccus marinus 450378 NZ_CP019602.1 Bac0016440 Tessaracoccus flavus strain RP1 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus flavus 1610493 NZ_CP019605.1 Bac0016441 Tessaracoccus aquimaris strain NSG39 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus aquimaris 1332264 NZ_CP019606.1 Bac0016442 Tessaracoccus flavescens strain SST-39T Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus flavescens 399497 NZ_CP019607.1 Bac0016443 Vagococcus penaei strain CD276T "Vagococcus penaei strain CD276T is a Gram-positive, spherical bacterium characterized by its facultative anaerobic metabolism and non-sporulating nature. This strain exhibits optimal growth at a temperature of 29.0 °C, indicating a potential preference for mesophilic environments. As a facultative aerobe/anaerobe, Vagococcus penaei has the metabolic flexibility to thrive in varying oxygen conditions, which may allow it to colonize diverse ecological niches.↵↵The spherical morphology of Vagococcus penaei is typical of many members within the genus, contributing to its classification and potential functional roles in its habitat. The absence of sporulation suggests that this strain relies on other survival strategies in adverse conditions, potentially including the formation of biofilms or other protective mechanisms that enhance resilience in fluctuating environments.↵↵Given its optimal growth temperature and oxygen requirements, Vagococcus penaei may be well-adapted to environments such as the intestines of marine organisms or other aquatic systems, where such conditions are prevalent. This adaptability highlights the importance of Vagococcus penaei in the microbial community dynamics of its habitat, possibly influencing nutrient cycling and interactions with other microbial entities. The study of this strain may provide insights into the functional roles of Gram-positive microorganisms in diverse ecosystems, particularly in relation to their metabolic versatility and ecological adaptations." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus penaei Gram-positive sphere non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 633807 NZ_CP019609.1 Bac0016444 Nostocales cyanobacterium HT-58-2 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocales cyanobacterium HT-58-2 1940762 NZ_CP019636.1 Bac0016445 Planococcus lenghuensis strain Y42 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus lenghuensis 2213202 NZ_CP019640.1 Bac0016446 Limihaloglobus sulfuriphilus strain SM-Chi-D1 Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales Sedimentisphaeraceae Limihaloglobus Limihaloglobus sulfuriphilus 1851148 NZ_CP019646.1 Bac0016447 Paenibacillus larvae subsp. larvae strain Eric_III Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae 147375 NZ_CP019656.1 Bac0016448 Shigella sonnei strain 75/02 "Shigella sonnei strain 75/02 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for S. sonnei strain 75/02 is approximately 37.0 degrees Celsius, which aligns with the physiological conditions found within its host-associated habitat. As a chemoorganotroph, this microbe utilizes organic compounds as its primary energy source, reflecting its adaptation to environments where such substrates are prevalent, particularly within the intestinal tracts of hosts. ↵↵The host-associated habitat indicates that S. sonnei strain 75/02 likely plays a role in specific microbial interactions within the gastrointestinal microbiome, potentially influencing host health and disease dynamics. Understanding the ecological niche of this strain could provide insights into its interactions with the host immune system and other microbial community members, which may be crucial for comprehending its role in gastrointestinal diseases." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sonnei Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 624 NZ_CP019692.1 Bac0016449 Novibacillus thermophilus strain SG-1 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Novibacillus Novibacillus thermophilus 1471761 NZ_CP019699.1 Bac0016450 Polaribacter sp. BM10 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. BM10 1529069 NZ_CP019704.1 Bac0016451 Levilactobacillus brevis strain TMW 1.2108 "Levilactobacillus brevis strain TMW 1.2108 is a Gram-positive, rod-shaped bacterium that exhibits a unique cell arrangement, occurring in both chains and singles. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. Its optimal growth temperature is 25.0°C, indicating a preference for moderate ambient temperatures, which may be reflective of its natural habitats.↵↵L. brevis is known to inhabit diverse environments, which could include fermented food products and various ecological niches where lactic acid bacteria are commonly found. The ability to grow in different conditions and arrangements suggests a versatile adaptation mechanism, potentially enhancing its survival and functional roles in fermentation and microbial interactions. ↵↵The presence of L. brevis in multiple habitats may also imply its involvement in complex microbial communities, contributing to the fermentation processes and influencing the flavor profile of fermented foods. Given its metabolic flexibility and growth characteristics, L. brevis strain TMW 1.2108 could serve as a model organism for studying the functional roles of lactic acid bacteria in food science and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP019734.1 Bac0016452 Streptomyces sp. MOE7 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MOE7 1961713 NZ_CP019779.1 Bac0016453 Bartonella sp. WD16.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella sp. WD16.2 1933904 NZ_CP019781.1 Bac0016454 Bartonella sp. JB15 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella sp. JB15 1933906 NZ_CP019787.1 Bac0016455 Anaerohalosphaera lusitana strain ST-NAGAB-D1 Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales Anaerohalosphaeraceae Anaerohalosphaera Anaerohalosphaera lusitana 1936003 NZ_CP019791.1 Bac0016456 Streptomyces sp. fd1-xmd Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. fd1-xmd 1812480 NZ_CP019798.1 Bac0016457 Pseudomonas azotoformans strain F77 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas azotoformans 47878 NZ_CP019856.1 Bac0016458 Komagataeibacter nataicola strain RZS01 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter nataicola 265960 NZ_CP019876.1 Bac0016459 Mycolicibacterium litorale strain F4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium litorale 758802 NZ_CP019882.1 Bac0016460 Natrarchaeobaculum aegyptiacum strain JW/NM-HA 15 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum aegyptiacum 745377 NZ_CP019893.1 Bac0016461 Ketogulonicigenium robustum strain SPU_B003 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ketogulonicigenium Ketogulonicigenium robustum 92947 NZ_CP019937.1 Bac0016462 Methylocystis bryophila strain S285 "Methylocystis bryophila strain S285 is a Gram-negative, non-spore-forming spherical bacterium that exhibits optimal growth at a temperature of 29.0°C and requires aerobic conditions for its metabolic activities. As a member of the Methylocystis genus, this strain is likely involved in the oxidation of methane, contributing to carbon cycling in its environment. ↵↵The spherical morphology of M. bryophila S285 suggests adaptations that may enhance its surface area-to-volume ratio, potentially facilitating gas exchange and nutrient uptake in its aerobic habitat. The organism's inability to form spores indicates a reliance on stable environmental conditions for survival and growth, which is typical for many aerobic bacteria that thrive in nutrient-rich niches. ↵↵Given its specific temperature preference, M. bryophila S285 may be well-suited to moderate climates or environments where temperatures are consistently around its optimal range. This adaptability could play a significant role in the bacterial community dynamics of its ecological niche, particularly in environments with fluctuating methane concentrations. The presence of this strain in such habitats could provide insights into the microbial processes that regulate methane emissions and their impact on greenhouse gas dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylocystis Methylocystis bryophila Gram-negative sphere non-motile aerobic 29 mesophilic non-spore-forming 655015 NZ_CP019949.1 Bac0016463 Rhodopseudomonas palustris strain YSC3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris 1076 NZ_CP019967.1 Bac0016464 Lysinibacillus sphaericus strain DSM 28 "Lysinibacillus sphaericus strain DSM 28 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and is classified as an aerobic organism. This strain is notable for its ability to survive in specialized habitats, which suggests an adaptation to specific environmental conditions. The formation of spores allows L. sphaericus DSM 28 to endure adverse situations, potentially contributing to its persistence in its native ecological niches.↵↵As a member of the genus Lysinibacillus, this strain is likely to possess unique metabolic capabilities that enable it to exploit particular substrates or fulfill specific ecological roles within its habitat. Its aerobic nature implies that it utilizes oxygen for respiration, which may influence its interactions with other microbial communities and its overall contribution to biogeochemical cycles.↵↵Understanding the characteristics of Lysinibacillus sphaericus DSM 28 can provide insights into its potential applications in biotechnology and environmental management, particularly in contexts where its sporulating ability and aerobic metabolism may be harnessed for bioremediation or as a biocontrol agent. The specialized habitat preference of this strain underscores the importance of habitat-specific adaptations in microbial ecology, highlighting how such traits can shape microbial diversity and functionality in various ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sphaericus Positive Rod Yes 1 1 Aerobe Mesophilic Specialized Free living Sporulating 1421 NZ_CP019980.1 Bac0016465 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 "Bacillus thuringiensis strain L-7601 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated habitats. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, allowing it to adapt to a variety of environmental conditions. ↵↵Like other members of the Bacillus genus, B. thuringiensis L-7601 is characterized by its ability to form endospores, which serve as a survival mechanism under unfavorable conditions. The sporulation process not only contributes to the bacterium's resilience but also plays a critical role in its life cycle, enabling it to persist in diverse ecological niches related to its host organisms.↵↵The ecological implications of B. thuringiensis L-7601's host-associated habitat suggest a potential role in mutualistic or symbiotic relationships, where the bacterium may influence the health and development of its host. Such interactions could be significant in agricultural or natural ecosystems, where B. thuringiensis strains are often studied for their insecticidal properties. Further research could elucidate the specific ecological roles and interactions of this strain within its host environment, highlighting its potential contributions to microbial community dynamics and host health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP020003.1 Bac0016466 Geobacillus thermodenitrificans strain T12 "Geobacillus thermodenitrificans strain T12 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives optimally at a temperature of 65.0°C. As a chemoorganotroph, this strain utilizes organic compounds as its primary energy source, allowing it to metabolize a variety of substrates in its specialized habitat. Additionally, G. thermodenitrificans strain T12 is classified as a facultative aerobe, indicating its ability to grow in both aerobic and anaerobic environments. ↵↵The thermophilic nature of strain T12 suggests its potential role in high-temperature environments, such as geothermal ecosystems or industrial processes that require heat-stable microbial activity. Its capacity for sporulation is significant, allowing it to endure unfavorable conditions, which may contribute to its survival in specialized habitats that experience fluctuating environmental parameters. This resilience, combined with its metabolic versatility, positions G. thermodenitrificans strain T12 as an interesting candidate for biotechnological applications, particularly in processes that involve organic waste degradation or bioenergy production. Understanding the specific environmental niches occupied by this strain could provide insights into microbial adaptations to extreme conditions, highlighting the intricate relationships between thermophilic bacteria and their ecosystems." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus thermodenitrificans Positive Rod Yes 1 1 Facultative aerobe 65 Chemoorganotroph Thermophilic Specialized Free living Sporulating 33940 NZ_CP020031.1 Bac0016467 Blastomonas fulva strain T2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Blastomonadaceae Blastomonas Blastomonas fulva 1550728 NZ_CP020084.1 Bac0016468 Halopseudomonas phragmitis strain S-6-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas phragmitis 1931241 NZ_CP020100.1 Bac0016469 Comamonas kerstersii strain 8943 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas kerstersii 225992 NZ_CP020121.1 Bac0016470 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae 1477 NZ_CP020328.1 Bac0016471 Martelella mediterranea DSM 17316 strain MACL11 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Martelella Martelella mediterranea 1122214 NZ_CP020330.1 Bac0016472 Oceanobacillus iheyensis strain CHQ24 "Oceanobacillus iheyensis strain CHQ24 is a Gram-positive, rod-shaped bacterium that optimally thrives at a temperature of 30.0°C and requires oxygen for growth, classifying it as an aerobe. This strain is notable for its versatility, having been identified in multiple habitats, which suggests a robust adaptability to varying environmental conditions. ↵↵The rod shape and aerobic nature of Oceanobacillus iheyensis strain CHQ24 imply a potential role in various biogeochemical cycles, particularly in aerobic environments where organic matter decomposition occurs. The bacterium's ability to thrive at a moderate temperature further indicates its capability to inhabit mesophilic environments, which are prevalent in marine and terrestrial ecosystems.↵↵Given its habitat versatility and aerobic metabolism, Oceanobacillus iheyensis strain CHQ24 may contribute to nutrient cycling in its ecological niches, supporting microbial communities in diverse settings. Understanding the ecological roles of such microbes can enhance our knowledge of environmental microbiology and the dynamics of microbial life in different ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus iheyensis Positive Rod Yes 1 1 Aerobe 30 Mesophilic Multiple 182710 NZ_CP020357.1 Bac0016473 Candidatus Thiodictyon syntrophicum strain Cad16T Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thiodictyon Candidatus Thiodictyon syntrophicum 1166950 NZ_CP020370.1 Bac0016474 Shewanella khirikhana strain TH2012 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella khirikhana 1965282 NZ_CP020373.1 Bac0016475 Rhodothermaceae bacterium RA Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermaceae bacterium RA 1779382 NZ_CP020382.1 Bac0016476 Streptococcus equinus strain FDAARGOS_251 "Streptococcus equinus strain FDAARGOS_251 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism. This strain has been identified primarily in environments associated with dairy, including dairy farms and dairy products, as well as in the gastrointestinal tracts of ruminants, particularly within the rumen.↵↵The presence of S. equinus in the gastrointestinal tracts of ruminants suggests a role in the complex microbial ecosystem of the rumen, where it may contribute to the fermentation processes essential for the digestion of fibrous plant materials. This bacterium's ability to thrive in both aerobic and anaerobic conditions allows it to adapt to the variable oxygen levels within the rumen and other habitats, making it a versatile member of the microbial community.↵↵Given its association with dairy environments, S. equinus strain FDAARGOS_251 may also play a role in the fermentation of dairy products, potentially influencing the flavor and texture profiles of these products. Understanding the ecological functions of this strain could provide insights into its contributions to ruminant digestion and dairy fermentation processes, highlighting its importance in both agricultural and ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equinus Positive Cocci Facultative anaerobe dairy farms; dairy products; gastrointestinal tracts of ruminants; rumen 1335 NZ_CP020438.1 Bac0016477 Paracoccus yeei strain FDAARGOS_252 "Paracoccus yeei strain FDAARGOS_252 is a Gram-negative, nonsporulating coccus that exhibits chemoheterotrophic metabolism and is classified as an aerobe. This strain thrives in soil environments, where it likely contributes to the complex microbial community involved in nutrient cycling. As a chemoheterotroph, P. yeei strain FDAARGOS_252 utilizes organic compounds as both carbon and energy sources, which allows it to play a role in the degradation of organic matter within its habitat.↵↵The coccoid morphology of this strain may facilitate its survival and interaction within soil matrices, potentially influencing its nutrient acquisition strategies and competition with other soil microorganisms. The aerobic nature of P. yeei strain FDAARGOS_252 suggests that it requires oxygen for its metabolic processes, which is consistent with its adaptation to well-aerated soil environments.↵↵Given its ecological role, Paracoccus yeei strain FDAARGOS_252 may be involved in various biogeochemical cycles, contributing to soil health and fertility. Its presence in soil ecosystems underscores the importance of studying such microbes to understand their functions in environmental processes, particularly in the context of organic matter decomposition and nutrient release." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus yeei Negative Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 147645 NZ_CP020441.2 Bac0016478 Streptococcus salivarius strain FDAARGOS_259 "Streptococcus salivarius strain FDAARGOS_259 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in various oxygen conditions. As a host-associated microbe, S. salivarius is commonly found within the oral cavity of humans, where it plays a role in the microbial community. It is noteworthy that, as a member of the Streptococcus genus, this strain is part of the normal flora and may contribute to oral health by competing with potential pathogens.↵↵The ability of S. salivarius to adapt to both aerobic and anaerobic environments underscores its versatility and potential for survival in diverse habitats within the host. Additionally, the chain and pair arrangement of its cells may facilitate interactions with other microorganisms in the oral microbiome, potentially influencing biofilm formation and community dynamics. Understanding the traits of S. salivarius strain FDAARGOS_259 can provide insights into its ecological role in maintaining oral health and its interactions within the complex ecosystem of the human mouth." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 NZ_CP020451.2 Bac0016479 Neisseria mucosa strain FDAARGOS_260 "Neisseria mucosa strain FDAARGOS_260 is a Gram-negative bacterium characterized as a facultative anaerobe. This strain, belonging to the genus Neisseria, exhibits the typical cellular morphology of its genus, which includes the presence of diplococci arrangements. As a facultative anaerobe, N. mucosa strain FDAARGOS_260 has the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to thrive in diverse ecological niches.↵↵While information regarding its pathogenicity is not specified, members of the Neisseria genus are known to inhabit the mucosal surfaces of humans and other animals, suggesting that N. mucosa may play a role in the normal microbiota of mucosal membranes. This characteristic could contribute to its ecological adaptability, facilitating survival in varying oxygen conditions.↵↵The unique metabolic capabilities of N. mucosa strain FDAARGOS_260 may enable it to utilize a range of substrates, potentially influencing its interactions within the microbiome and its environmental resilience. Further research could elucidate the specific roles this strain may play in its ecological context, particularly in relation to other microbial communities and host interactions. Understanding the functional implications of N. mucosa strain FDAARGOS_260 in its native habitat could provide insights into the dynamics of microbial ecosystems and their contributions to health or disease." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria mucosa Negative Facultative anaerobe 488 NZ_CP020452.2 Bac0016480 Lactobacillus amylolyticus strain L6 "Lactobacillus amylolyticus strain L6 is a Gram-positive, rod-shaped bacterium that thrives in crop habitats and exhibits facultative anaerobic metabolism. This strain is characterized by its ability to ferment carbohydrates, which is consistent with its classification within the Lactobacillus genus, known for its role in various fermentation processes. The facultative anaerobic nature of L. amylolyticus strain L6 allows it to adapt to varying oxygen levels, making it versatile in different environments.↵↵Lactobacillus species are often associated with the fermentation of plant materials, contributing to the preservation and enhancement of nutritional profiles in various substrates. The presence of L. amylolyticus strain L6 in crop habitats suggests a potential role in plant health and soil microbiome dynamics, possibly influencing the availability of nutrients and promoting plant growth through its metabolic activities.↵↵Understanding the specific interactions of L. amylolyticus strain L6 within its ecological niche could provide valuable insights into its contributions to agricultural microbiology, particularly in sustainable farming practices where microbial interactions are essential for enhancing soil fertility and crop resilience. Further research may elucidate the precise mechanisms by which this strain interacts with its environment and its implications for crop management." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylolyticus Positive Rod Facultative anaerobe crop 83683 NZ_CP020457.1 Bac0016481 Cognaticolwellia beringensis strain NB097-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Cognaticolwellia Cognaticolwellia beringensis 1967665 NZ_CP020465.1 Bac0016482 Roseovarius mucosus strain SMR3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius mucosus 215743 NZ_CP020474.1 Bac0016483 Campylobacter helveticus strain ATCC 51209 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter helveticus 28898 NZ_CP020481.1 Bac0016484 Escherichia coli strain 103 "Escherichia coli strain 103 is a Gram-negative, rod-shaped bacterium commonly organized in pairs or present as single cells. This strain thrives optimally at 37.0°C, reflecting its adaptation to the warm-blooded hosts it typically inhabits. As a facultative anaerobe, E. coli strain 103 can grow in both aerobic and anaerobic conditions, which allows it to effectively colonize diverse environments within its host.↵↵This strain is primarily associated with host environments, indicating a close relationship with its biological niche. The ability to exist in varied oxygen conditions may confer advantages in competing for resources within the host’s microbiome, as it can switch its metabolic pathways according to the availability of oxygen. Such metabolic versatility is a hallmark trait of E. coli strains and contributes to their resilience in dynamic environments.↵↵While the ecological role of E. coli strain 103 remains to be fully elucidated, its adaptability and association with host organisms suggest it may play a significant part in the maintenance of gut homeostasis. Further investigation into its specific interactions within the host microbiome may provide insights into its potential benefits or effects on host health, highlighting the importance of understanding strain-specific traits within the broader context of microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP020496.1 Bac0016485 Streptomyces sp. Sge12 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Sge12 1972846 NZ_CP020555.1 Bac0016486 Kitasatospora aureofaciens strain DM-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora aureofaciens soil 1894 NZ_CP020568.1 Bac0016487 Microcystis sp. MC19 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis sp. MC19 1967666 NZ_CP020664.1 Bac0016488 Cnuibacter physcomitrellae strain XA(T) "Cnuibacter physcomitrellae strain XA(T) is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and is characterized by its non-spore-forming nature. This microbe thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. The Gram-positive classification indicates the presence of a thick peptidoglycan layer in its cell wall, which is a notable feature that could influence its resilience and interaction with other microorganisms in its habitat.↵↵As an aerobic organism, C. physcomitrellae strain XA(T) likely plays a role in the degradation of organic matter in oxygen-rich environments, potentially contributing to nutrient cycling within its ecological niche. The absence of sporulation highlights its reliance on favorable conditions for survival and reproduction, which may limit its ability to withstand extreme environmental stressors compared to spore-forming bacteria. Understanding the physiological traits of C. physcomitrellae strain XA(T) can provide insight into its ecological role, particularly in environments where aerobic conditions prevail and organic substrates are present. Further research may elucidate the specific interactions of this bacterium within microbial communities and its potential contributions to ecosystem functioning." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cnuibacter Cnuibacter physcomitrellae Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1619308 NZ_CP020716.1 Bac0016489 Bacillus mycoides strain Gnyt1 "Bacillus mycoides strain Gnyt1 is a Gram-positive, rod-shaped bacterium isolated from the deep-sea hydrothermal vent field of the Iheya Ridge in the Okinawa Trough. This organism exhibits facultative anaerobic metabolism, allowing it to thrive in environments with varying oxygen levels, which is characteristic of hydrothermal vent ecosystems. The unique habitat of strain Gnyt1 suggests that it may possess adaptations enabling it to withstand extreme conditions such as high pressure, elevated temperatures, and fluctuations in nutrient availability commonly associated with deep-sea environments.↵↵The ability of Bacillus mycoides strain Gnyt1 to occupy such a specialized niche provides a valuable perspective on microbial diversity and metabolic versatility in extreme habitats. Its presence in hydrothermal systems may also indicate potential roles in biogeochemical cycles, such as the degradation of organic matter or participation in sulfur cycling, which are critical processes in these unique ecosystems. Further research into this strain could reveal insights into the ecological functions of deep-sea microbes and their potential applications in biotechnology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 NZ_CP020743.1 Bac0016490 Microcystis aeruginosa PCC 7806SL Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 1903187 NZ_CP020771.1 Bac0016491 Mycobacterium dioxanotrophicus strain PH-06 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium dioxanotrophicus 482462 NZ_CP020813.1 Bac0016492 Halalkalibacter krulwichiae strain AM31D Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halalkalibacter Halalkalibacter krulwichiae 199441 NZ_CP020814.1 Bac0016493 Pantoea vagans strain FBS135 "Pantoea vagans strain FBS135 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and is nonsporulating. This strain is primarily associated with host environments, which suggests its potential role in symbiotic or associative relationships with its hosts. ↵↵The Gram-negative cell wall structure of P. vagans strain FBS135 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interactions with the host and its environment. As a facultative anaerobe, this microbe can thrive in both aerobic and anaerobic conditions, enabling it to adapt to various oxygen levels present in host-associated habitats. ↵↵Given its nonsporulating nature, P. vagans strain FBS135 may rely on other survival strategies to endure unfavorable conditions, which could include forming biofilms or utilizing metabolic flexibility to exploit available nutrients. This adaptability may be crucial for its persistence in host-associated environments where competition for resources can be intense. ↵↵Overall, the traits of Pantoea vagans strain FBS135 suggest that it may play a significant role in microbial communities associated with hosts, potentially contributing to nutrient cycling or influencing host physiology. Further research into its specific interactions and functional roles within these communities could provide valuable insights into its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea vagans Negative Rod No 1 2 Facultative Mesophilic HostAssociated Free living Nonsporulating 470934 NZ_CP020820.1 Bac0016494 Campylobacter cuniculorum DSM 23162 = LMG 24588 "Campylobacter cuniculorum DSM 23162 (also known as LMG 24588) is a Gram-negative, rod-shaped bacterium that exhibits microaerophilic growth characteristics, thriving optimally at a temperature of 37.0°C. This organism is part of the Campylobacter genus, which is well-known for its distinctive morphology and metabolic requirements. The microaerophilic nature of C. cuniculorum suggests that it is adapted to environments with reduced oxygen levels, which may influence its habitat preferences and interactions within its ecological niche.↵↵The ability of Campylobacter cuniculorum to thrive at an optimal temperature of 37.0°C aligns with the physiological conditions typically found in warm-blooded animals, potentially indicating a role in specific animal microbiomes or environments where such conditions prevail. The Gram-negative cell wall structure of this bacterium is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its resistance to certain environmental stresses and influence its interactions with other microbial species.↵↵Understanding the metabolic and ecological traits of Campylobacter cuniculorum can provide insights into its potential roles in microbial communities, particularly in environments where microaerophilic conditions are present. This may have implications for studying its interactions within host organisms or its contribution to the microbiological dynamics of specific ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter cuniculorum Gram-negative rod microaerophile 37 mesophilic 1121267 NZ_CP020867.1 Bac0016495 Pseudomonas sp. M30-35 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. M30-35 1981174 NZ_CP020892.1 Bac0016496 Bacillus vallismortis strain NBIF-001 "Bacillus vallismortis strain NBIF-001 is a Gram-positive, spore-forming bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This strain exemplifies the characteristics typical of the Bacillus genus, known for its ability to produce durable spores that facilitate survival in various environmental conditions. The Gram-positive nature of B. vallismortis indicates the presence of a thick peptidoglycan layer in its cell wall, which can contribute to its resilience against certain antimicrobial agents.↵↵The optimal temperature of 29.0°C suggests that this strain may be well adapted to moderate environmental temperatures, potentially enabling it to inhabit a range of niches, including soil and decaying organic matter, where it can play a role in nutrient cycling. The sporulation capability is particularly noteworthy, as it allows B. vallismortis strain NBIF-001 to endure unfavorable conditions by forming endospores, which are highly resistant to desiccation, heat, and other stressors.↵↵Understanding the growth characteristics and ecological adaptations of Bacillus vallismortis strain NBIF-001 may provide insights into its potential applications in biotechnology, particularly in bioremediation or soil health enhancement, where its aerobic metabolism and sporulation could contribute to the breakdown of organic materials and the promotion of microbial diversity in the environment." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus vallismortis Gram-positive aerobic 29 mesophilic spore-forming 72361 NZ_CP020893.1 Bac0016497 Rhizobium phaseoli Brasil 5 strain Bra5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium phaseoli 526949 NZ_CP020896.1 Bac0016498 Flavobacterium kingsejongi strain WV39 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium kingsejongi 1678728 NZ_CP020919.1 Bac0016499 Weissella cibaria strain M2 "Weissella cibaria strain M2 is a Gram-negative, facultative anaerobic bacterium that has been isolated from various habitats, including chili Bo, Korean kimchi, pasture, saliva, soil, and tropical fruits. This strain's diverse ecological niches suggest its adaptability and potential role in various fermentation processes, particularly in traditional food products such as kimchi, which is known for its complex microbial community.↵↵As a facultative anaerobe, W. cibaria strain M2 can thrive in both aerobic and anaerobic environments, allowing it to occupy a range of ecological settings. The presence of this strain in human-associated environments, like saliva, indicates possible interactions with the human microbiome, suggesting a potential role in oral health or fermentation of food substrates. ↵↵Moreover, its isolation from tropical fruits highlights its ability to contribute to the microbial diversity of these ecosystems, potentially influencing fruit fermentation and preservation. The versatility of Weissella cibaria strain M2 exemplifies the intricate relationships between microorganisms and their environments, particularly in human food systems where fermentation is key to flavor development and preservation. Further exploration of this strain could unveil its contributions to microbial ecology and its applications in food science and health." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella cibaria Negative Facultative anaerobe Chili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits 137591 NZ_CP020928.1 Bac0016500 Marinobacter salarius strain SMR5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter salarius 1420917 NZ_CP020931.1 Bac0016501 Bacillus cereus strain BC-AK "Bacillus cereus strain BC-AK is a Gram-positive, rod-shaped bacterium that typically forms chains and is characterized as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, suggesting a preference for mesophilic environments. Bacillus cereus is known for its versatile habitat, which includes a range of ecological niches, allowing it to adapt to various environmental conditions.↵↵The chain arrangement of Bacillus cereus strain BC-AK may facilitate its survival and propagation in diverse settings, potentially enhancing its ability to compete for resources in the environment. The aerobic nature of this strain indicates its reliance on oxygen for metabolic processes, which is a trait common to many members of the Bacillus genus. This reliance on aerobic conditions may influence its ecological interactions, particularly in environments where oxygen availability fluctuates.↵↵Understanding the traits of Bacillus cereus strain BC-AK can provide insights into its ecological roles, such as its potential contributions to nutrient cycling and soil health. The adaptability of this strain to multiple habitats underscores the ecological significance of Bacillus cereus species in various ecosystems, where they may participate in processes such as organic matter decomposition and biogeochemical cycling." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus tropicus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains 2026188 NZ_CP020937.1 Bac0016502 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6989 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 473423 NZ_CP020982.2 Bac0016503 Monoglobus pectinilyticus strain 14 Bacillati Bacillota Clostridia Monoglobales Monoglobaceae Monoglobus Monoglobus pectinilyticus 1981510 NZ_CP020991.1 Bac0016504 Sedimentisphaera salicampi strain ST-PulAB-D4 Pseudomonadati Planctomycetota Phycisphaerae Sedimentisphaerales Sedimentisphaeraceae Sedimentisphaera Sedimentisphaera salicampi 1941349 NZ_CP021023.1 Bac0016505 Methylorubrum zatmanii strain PSBB041 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum zatmanii 29429 NZ_CP021054.1 Bac0016506 Bacillus thuringiensis strain ATCC 10792 "Bacillus thuringiensis strain ATCC 10792 is a Gram-positive, rod-shaped bacterium that is characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain is typically found in host-associated habitats, indicating a potential relationship with specific organisms or environments where it may play a role in microbial communities. ↵↵As a facultative anaerobe, Bacillus thuringiensis ATCC 10792 can thrive in both aerobic and anaerobic conditions, which allows it to adapt to varying environmental oxygen levels. The capability to form spores enables this bacterium to withstand adverse environmental conditions and contributes to its persistence in natural settings. ↵↵Bacillus thuringiensis is widely recognized for its use as a biopesticide, and the traits of strain ATCC 10792 may suggest its utility in agricultural applications, particularly in the biological control of pests. The ecological role of this strain may extend beyond pest management, potentially influencing soil health and microbial diversity in its host-associated environments. Understanding the specific interactions of Bacillus thuringiensis ATCC 10792 within its habitat can provide insights into its ecological significance and potential benefits in sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP021061.1 Bac0016507 Citrobacter braakii strain SCC4 "Citrobacter braakii strain SCC4 is a Gram-negative bacterium belonging to the genus Citrobacter. This strain exhibits the characteristic features of Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane that contains lipopolysaccharides. Strains within the Citrobacter genus are generally known to be versatile in their metabolic capabilities, which may allow them to thrive in a variety of environments. ↵↵As a member of the Enterobacteriaceae family, C. braakii is likely to be rod-shaped and capable of fermenting carbohydrates, although specific fermentation profiles for strain SCC4 are not provided. This metabolic versatility may contribute to its ecological adaptability, enabling it to inhabit diverse niches, including soil, water, and the gastrointestinal tracts of animals. ↵↵The potential for Citrobacter species to engage in biogeochemical cycles, particularly in the context of nutrient cycling and organic matter degradation, underscores their ecological significance. Overall, the Gram-negative nature of Citrobacter braakii strain SCC4 suggests a potential role in various microbial interactions and environmental processes, although further research would be necessary to elucidate its specific ecological contributions and interactions within communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter braakii negative 57706 NZ_CP021078.1 Bac0016508 Deinococcus ficus strain CC-FR2-10 "Deinococcus ficus strain CC-FR2-10 is a Gram-positive, rod-shaped bacterium that exhibits aerobic respiration and thrives optimally at a temperature of 37.0 °C. This strain is characterized by its non-spore-forming nature, distinguishing it from other members of the Deinococcus genus that are known for their resilience and sporulation capabilities. ↵↵As a member of the Deinococcus genus, which is renowned for its exceptional resistance to extreme environmental conditions, strain CC-FR2-10 may possess unique biochemical pathways that enhance its survival and metabolic efficiency in aerobic environments. The optimal growth temperature of 37.0 °C suggests that this strain is well adapted to moderate temperature conditions, which is typical for many environmental and clinical bacteria. ↵↵The absence of sporulation in this strain could indicate a reliance on alternative mechanisms for survival in fluctuating environments. This trait may position Deinococcus ficus strain CC-FR2-10 as an interesting subject for further study, particularly in understanding its ecological role and potential applications in biotechnology or bioremediation, where aerobic processes are critical. Further research could elucidate its metabolic capabilities and interactions within microbial communities, providing insights into its biological significance in various habitats." Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus Gram-positive rod non-motile aerobic 37 mesophilic non-spore-forming 317577 NZ_CP021081.1 Bac0016509 Nitrosospira lacus strain APG3 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira lacus 1288494 NZ_CP021106.3 Bac0016510 Bordetella genomosp. 8 strain AU19157 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 8 1416806 NZ_CP021108.1 Bac0016511 Bordetella genomosp. 9 strain AU17164 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 9 1416803 NZ_CP021109.1 Bac0016512 Bordetella genomosp. 13 strain AU7206 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella genomosp. 13 463040 NZ_CP021111.1 Bac0016513 Pseudorhodoplanes sinuspersici strain RIPI110 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Pseudorhodoplanes Pseudorhodoplanes sinuspersici 1235591 NZ_CP021112.1 Bac0016514 Aestuarium zhoushanense strain G7 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Aestuarium Aestuarium zhoushanense 2820523 NZ_CP021115.1 Bac0016515 Streptomyces sp. CLI2509 strain CLI2905 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CLI2509 1984801 NZ_CP021118.1 Bac0016516 Mycoplasmopsis synoviae strain MS-H "Mycoplasmopsis synoviae strain MS-H is a Gram-negative, coccoid bacterium that exhibits a characteristic arrangement of singles. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for conditions typically found within host organisms. As a facultative anaerobe, M. synoviae strain MS-H can adapt its metabolic processes to utilize both aerobic and anaerobic pathways, enabling it to survive in varied microenvironments within its host-associated habitat.↵↵The cellular morphology and arrangement of M. synoviae strain MS-H suggest potential interactions with host tissues, as the single-cocci formation may facilitate colonization and adaptation to specific niches. The bacterium's Gram-negative classification also implies the presence of an outer membrane, which can play a role in its interactions with the host immune system.↵↵Given its optimal growth temperature, M. synoviae strain MS-H is likely to be well-suited to the physiological conditions of warm-blooded hosts, supporting its ability to thrive in a host-associated habitat. The facultative nature of this microbe may allow it to exploit diverse metabolic strategies depending on the local oxygen availability, enhancing its survival and potential for persistence within host environments. This versatility suggests that M. synoviae strain MS-H could play a significant role in the microbial dynamics of its host, potentially influencing the host's overall microbiome and health status." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis synoviae Negative Cocci No 1 1 Facultative 37 Mesophilic HostAssociated Free living Singles Animal 2109 NZ_CP021129.1 Bac0016517 Lactobacillus delbrueckii subsp. delbrueckii strain TUA4408L "Lactobacillus delbrueckii subsp. delbrueckii strain TUA4408L is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It exhibits optimal growth at a temperature of 42.0°C, indicating a preference for warmer conditions, which may reflect its adaptation to specific ecological niches.↵↵The diverse habitat of L. delbrueckii subsp. delbrueckii strain TUA4408L suggests its versatility and potential roles in various fermentation processes. This trait underscores the strain's significance in the production of fermented foods, particularly in dairy products where it is commonly utilized for its probiotic properties. The ability to grow in different environments may also indicate its potential for use in biotechnological applications, including food preservation and enhancement of gut health.↵↵Understanding the specific growth conditions and cellular characteristics of L. delbrueckii subsp. delbrueckii strain TUA4408L can inform further studies on its metabolic pathways and interactions within microbial communities. This insight not only highlights the strain's importance in industrial applications but also opens avenues for exploring its ecological roles in complex microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 83684 NZ_CP021136.1 Bac0016518 Photobacterium damselae subsp. damselae strain KC-Na-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 NZ_CP021151.1 Bac0016519 Serratia marcescens strain 332 "Serratia marcescens strain 332 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and relies on chemoheterotrophic energy sources. This organism thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found in various warm-blooded hosts and environments. Notably, Serratia marcescens strain 332 is nonsporulating, indicating a reliance on vegetative growth rather than dormancy under unfavorable conditions.↵↵The versatile habitat of this strain suggests a capacity to adapt to diverse environments, which may include both natural and anthropogenic settings. This adaptability is characteristic of many members of the genus Serratia, which are often found in soil, water, and as part of the microbiota of plants and animals. The ability to grow in both aerobic and anaerobic conditions further enhances its ecological versatility, allowing it to occupy niches where oxygen levels vary.↵↵An intriguing aspect of Serratia marcescens strain 332's ecological role may involve its interactions with other microorganisms or its contributions to nutrient cycling in its habitat. The strain's metabolic capabilities suggest it could play a role in the degradation of organic matter, thereby influencing the microbial community dynamics and nutrient availability in its environment. This underscores the importance of understanding such microorganisms within the broader context of ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 NZ_CP021164.1 Bac0016520 Escherichia coli strain 5CRE51 "Escherichia coli strain 5CRE51 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which is characteristic of its adaptability to diverse habitats. E. coli strain 5CRE51 has an optimal growth temperature of 37.0°C, aligning with the typical temperature of the mammalian host, thus suggesting its specialization for a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, strain 5CRE51's presence in host-associated environments highlights its potential role in the microbiota of various organisms. The ability to live in pairs or singles may facilitate its interactions within complex microbial communities, where spatial arrangements can influence competition and cooperation with other microbial species. Given its facultative anaerobic nature, this strain may also play a role in metabolic processes that depend on the availability of oxygen, contributing to nutrient cycling within its ecological niche. Understanding the specific interactions and behaviors of E. coli strain 5CRE51 in its host-associated habitat could provide insights into the dynamics of microbial communities and their contributions to host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP021176.1 Bac0016521 Escherichia coli strain H17 "Escherichia coli strain H17 is a Gram-negative, rod-shaped bacterium characterized by its occurrence in pairs or as single cells. This strain, like other members of the E. coli species, thrives optimally at a temperature of 37.0°C, which is consistent with the typical physiological conditions found in the intestines of warm-blooded hosts. E. coli strain H17 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, thereby adapting to varying environmental conditions within its host.↵↵The habitat of E. coli strain H17 is primarily host-associated, reflecting its association with the gastrointestinal tract of mammals. This ecological niche suggests that the strain may play a role in the complex microbial communities that contribute to the host's digestive health and nutrient absorption processes. Furthermore, the ability of E. coli strain H17 to thrive under facultative anaerobic conditions may enable it to compete effectively with other microbial species within the intestinal environment, allowing it to maintain a stable presence in its habitat.↵↵Overall, the characteristics of E. coli strain H17 highlight its adaptability and significance within host-associated microbiomes, where it may contribute to both ecological balance and host health. Further research could elucidate the specific interactions and benefits that this strain provides within its native environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP021193.1 Bac0016522 Pontibacter actiniarum strain DSM 19842 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter actiniarum 323450 NZ_CP021236.1 Bac0016523 Mycobacterium lepraemurium strain Hawaii Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium lepraemurium 64667 NZ_CP021238.1 Bac0016524 Bordetella sp. J329 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella sp. J329 1977852 NZ_CP021250.1 Bac0016525 Corynebacterium striatum strain KC-Na-01 "Corynebacterium striatum strain KC-Na-01 is a Gram-positive bacterium characterized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This versatile metabolic capability allows C. striatum strain KC-Na-01 to adapt to a variety of ecological niches, potentially enhancing its survival in diverse habitats. ↵↵The Gram-positive nature of this strain suggests a thick peptidoglycan layer in its cell wall, which is a common feature among members of the Corynebacterium genus. This structural characteristic may contribute to its resilience against environmental stressors, including fluctuations in nutrient availability and varying oxygen levels. ↵↵The facultative anaerobic trait further indicates that C. striatum strain KC-Na-01 can utilize organic compounds through fermentation processes when oxygen is limited, while also being capable of aerobic respiration in oxygen-rich conditions. This dual metabolic strategy may facilitate its colonization of different environments, including those with variable oxygen concentrations.↵↵In terms of ecological significance, the adaptability of C. striatum strain KC-Na-01 to both aerobic and anaerobic conditions may play a role in its interactions within microbial communities, potentially influencing nutrient cycling and microbial dynamics in its habitat. This adaptability underscores the ecological importance of Corynebacterium species in various environments, where their metabolic flexibility may contribute to ecosystem functions and stability." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium striatum Positive Facultative anaerobe 43770 NZ_CP021252.1 Bac0016526 Candidatus Nitrosomarinus catalina strain SPOT01 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Candidatus Nitrosomarinus Candidatus Nitrosomarinus catalinensis 1898749 NZ_CP021324.1 Bac0016527 Maritalea myrionectae strain HL2708#5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Maritalea Maritalea myrionectae 454601 NZ_CP021331.1 Bac0016528 Escherichia coli strain 95NR1 "Escherichia coli strain 95NR1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is characteristic of many E. coli strains. The optimal growth temperature for strain 95NR1 is 37.0°C, aligning with the average body temperature of warm-blooded hosts, which suggests a close association with host organisms.↵↵The habitat of E. coli strain 95NR1 is primarily host-associated, reflecting its role in the gastrointestinal tract of mammals, where it plays a part in the complex microbiota. The adaptability of E. coli to various oxygen conditions allows it to utilize different metabolic pathways depending on the availability of oxygen, which is crucial for its survival and proliferation in diverse environments. ↵↵Understanding the traits of Escherichia coli strain 95NR1 could provide insights into its role in microbial communities within host organisms, specifically regarding its interactions with other microbial species and its potential contributions to the host's metabolic processes. Further investigation into the specific ecological interactions of this strain may reveal its influence on host health and the dynamics of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP021339.1 Bac0016529 Rhodococcus oxybenzonivorans strain S2-17 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus oxybenzonivorans 1990687 NZ_CP021355.1 Bac0016530 Acidovorax carolinensis strain P4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax carolinensis 553814 NZ_CP021366.1 Bac0016531 Rhizobium sp. ACO-34A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. ACO-34A 1571470 NZ_CP021371.1 Bac0016532 Oceanisphaera avium strain AMac2203 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Oceanisphaera Oceanisphaera avium 1903694 NZ_CP021376.1 Bac0016533 Cellulosimicrobium cellulans strain PSBB019 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium cellulans mesophilic antacid; Antarctic snow; arsenic contaminated hot spring microbial mat; biofilms; hot springs; Manikaran hot spring; Manikaran hot springs; soil Human 1710 NZ_CP021383.1 Bac0016534 Bifidobacterium breve strain NRBB57 "Bifidobacterium breve strain NRBB57 is a Gram-positive, anaerobic bacterium predominantly found in the gastrointestinal tracts of infants and within human breast milk. This strain plays a significant role in the composition of the infant gut microbiota, where it contributes to the establishment of a healthy microbial community in newborns. The presence of Bifidobacterium breve in human breast milk suggests a potential maternal influence on the early microbial colonization of infants, which is critical for their immune system development and overall health.↵↵As a member of the Bifidobacterium genus, strain NRBB57 is adapted to thrive in anaerobic environments, making it well-suited for the gut, where oxygen levels are minimal. Its presence in the intestines of healthy newborns indicates its importance in maintaining a balanced microbiome during the early stages of life. The specific metabolic pathways and probiotic properties associated with this strain may contribute to various health benefits, although further investigation is required to fully elucidate these effects.↵↵In summary, Bifidobacterium breve strain NRBB57 exemplifies the intricate relationship between maternal nutrition and infant microbiota development, highlighting the importance of early microbial exposure in shaping the health trajectories of newborns." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 NZ_CP021389.1 Bac0016535 Pacificitalea manganoxidans strain DY25 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pacificitalea Pacificitalea manganoxidans 1411902 NZ_CP021408.1 Bac0016536 Leptospira borgpetersenii serovar Hardjo-bovis strain 203 "Leptospira borgpetersenii serovar Hardjo-bovis strain 203 is a Gram-negative, spiral-shaped bacterium that is classified as an aerobic organism and is nonsporulating. This strain is host-associated, indicating that it typically resides within specific hosts rather than existing freely in the environment. The unique morphological characteristics of L. borgpetersenii, particularly its spirilla shape, contribute to its motility and ecological interactions within its host.↵↵Due to its aerobic nature, this strain relies on oxygen for metabolic processes, which may influence its distribution and survival within host environments. The host-associated habitat suggests that L. borgpetersenii serovar Hardjo-bovis strain 203 may have specialized adaptations that facilitate its persistence and replication in association with its host's biological systems.↵↵An ecological insight into this strain is its potential role in the complex microbiome of its host, where it may interact with other microorganisms, influencing host health and homeostasis. Such interactions could provide a niche for further study regarding the bacterium's role in host physiology and its contributions to the overall microbial ecology within the host organism." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii Negative Spirilla No 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 338217 NZ_CP021413.1 Bac0016537 Sulfurospirillum diekertiae strain SL2-1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum diekertiae 1854492 NZ_CP021416.1 Bac0016538 Acutalibacter muris strain KB18 Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Acutalibacter Acutalibacter muris anaerobic 1796620 NZ_CP021422.1 Bac0016539 Armatimonadetes bacterium Uphvl-Ar1 Bacillati Armatimonadota Armatimonadetes bacterium Uphvl-Ar1 2004467 NZ_CP021423.1 Bac0016540 Armatimonadetes bacterium Uphvl-Ar2 Bacillati Armatimonadota Armatimonadetes bacterium Uphvl-Ar2 2004468 NZ_CP021424.1 Bac0016541 Oleiphilus messinensis strain ME102 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oleiphilaceae Oleiphilus Oleiphilus messinensis 141451 NZ_CP021425.1 Bac0016542 Lacticaseibacillus rhamnosus strain 4B15 "Lacticaseibacillus rhamnosus strain 4B15 is a Gram-positive, rod-shaped bacterium that demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain exhibits optimal growth at 37.0°C, which aligns with the typical physiological range for many mesophilic lactic acid bacteria. Lacticaseibacillus rhamnosus strain 4B15 has been isolated from diverse habitats, indicating its ecological versatility and potential adaptability to various niches within the microbiome.↵↵This strain is part of a group of lactic acid bacteria known for their role in fermentation and probiotic applications. Given its broad habitat range, L. rhamnosus strain 4B15 may contribute significantly to microbial communities in fermented foods as well as within the gastrointestinal tract of host organisms. The ability to grow under varying oxygen conditions suggests that this strain may play a role in maintaining microbial balance in environments that experience fluctuating oxygen levels.↵↵Overall, the traits of Lacticaseibacillus rhamnosus strain 4B15 underscore its potential significance in various ecological contexts, particularly in fermentation processes and as a beneficial inhabitant of the gut microbiome, where it may influence host health through metabolic interactions." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic Multiple Free living 47715 NZ_CP021426.1 Bac0016543 Cellulomonas sp. PSBB021 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp. PSBB021 2003551 NZ_CP021430.1 Bac0016544 Yoonia vestfoldensis strain SMR4r Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Yoonia Yoonia vestfoldensis 245188 NZ_CP021431.1 Bac0016545 Tumebacillus avium strain AR23208 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Tumebacillus Tumebacillus avium 1903704 NZ_CP021434.1 Bac0016546 Bacillus thuringiensis strain C15 "Bacillus thuringiensis strain C15 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, allowing it to survive in various environments. This strain is categorized as a facultative anaerobe, indicating that it can thrive in both the presence and absence of oxygen, which enhances its adaptability to different ecological niches. B. thuringiensis is primarily found in host-associated habitats, suggesting a potential relationship with various organisms, likely involving interactions that could be mutualistic or associative in nature.↵↵The sporulation capability of B. thuringiensis strain C15 is significant, as it enables the bacterium to endure adverse environmental conditions and facilitates its dissemination in natural ecosystems. This trait is particularly valuable for survival in fluctuating environments where nutrients may be limited or conditions may become inhospitable. ↵↵Additionally, the host-associated habitat of this strain points to a role in the microbiota of certain organisms, which could suggest a potential for influencing host health or contributing to biological processes within the host. The interaction dynamics between B. thuringiensis strain C15 and its host could offer insights into microbial community structures and functions, highlighting the importance of this strain in maintaining ecological balance. Understanding these relationships further could lead to applications in biotechnology and agriculture, where beneficial microbes play a role in promoting plant health and resilience." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP021436.1 Bac0016547 Ralstonia solanacearum strain SEPPX05 "Ralstonia solanacearum strain SEPPX05 is a Gram-negative bacterium primarily found in freshwater environments and soil. This strain is a member of the diverse Ralstonia genus, known for its versatility in adapting to various habitats. The isolation of strain SEPPX05 in freshwater and soil suggests its potential role in nutrient cycling within these ecosystems, possibly influencing microbial community dynamics and soil health.↵↵The Gram-negative nature of R. solanacearum strain SEPPX05 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its environmental resilience and interactions with other microorganisms. While specific pathogenicity traits and ecological roles of this strain have not been detailed, its habitat preferences hint at its capacity to thrive in aquatic and terrestrial ecosystems.↵↵Understanding the ecological implications of R. solanacearum strain SEPPX05 could provide insights into its potential interactions with other microbial populations and its role in freshwater and soil ecosystems. The strain's ability to inhabit both environments may indicate its adaptability and functional significance in maintaining ecological balance, particularly in nutrient-rich conditions where microbial interactions are crucial for ecosystem productivity." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 NZ_CP021448.1 Bac0016548 Comamonas serinivorans strain DSM 26136 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas serinivorans 1082851 NZ_CP021455.1 Bac0016549 Levilactobacillus brevis strain ZLB004 "Levilactobacillus brevis strain ZLB004 is a Gram-positive, rod-shaped bacterium that typically arranges itself in singles or chains. This strain exhibits facultative anaerobic metabolism, enabling it to thrive in both oxygen-rich and oxygen-poor environments. The optimal growth temperature for L. brevis ZLB004 is around 25.0°C, suggesting a preference for moderate conditions which could be representative of its natural habitats.↵↵The versatility in oxygen requirement indicates that L. brevis ZLB004 may inhabit a variety of environments, potentially including fermented foods, plant materials, and other ecological niches where organic substrates are available. This adaptability might contribute to its role in fermentation processes, influencing flavor and texture in food products.↵↵Moreover, the ability to form chains or exist as single cells may impact its interactions with other microorganisms and its overall ecological fitness. Such characteristics could facilitate its survival and proliferation in diverse microbial communities, underscoring its potential significance in both food science and microbial ecology. Understanding the traits of L. brevis ZLB004 may provide insights into its functional roles in fermentation and its interactions within complex microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP021457.1 Bac0016550 Pediococcus pentosaceus strain SRCM100892 "Pediococcus pentosaceus strain SRCM100892 is a Gram-positive, cocci-shaped bacterium that typically exhibits a tetrad arrangement. This strain thrives optimally at a temperature of 30.0°C and is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments. Found in multiple habitats, Pediococcus pentosaceus is known for its versatility, which may contribute to its wide usage in various fermentation processes.↵↵Due to its specific morphological characteristics and physiological traits, P. pentosaceus strain SRCM100892 may play a significant role in food fermentation, where it could influence the flavor and texture of fermented products. The ability of this strain to survive in diverse environments suggests potential applications beyond traditional fermentation, possibly in bioprocessing or as a probiotic in food systems. The unique adaptation strategies of this strain, especially its facultative anaerobic metabolism, could be advantageous in fluctuating oxygen conditions, further highlighting its ecological flexibility." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Tetrads 1255 NZ_CP021471.1 Bac0016551 Francisella tularensis subsp. novicida strain TCH2015 "Francisella tularensis subsp. novicida strain TCH2015 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells. This strain is classified as an aerobic organism, indicating that it requires oxygen for growth and metabolic processes. It is typically found in aquatic habitats, which suggests an ecological adaptation to environments rich in water.↵↵The rod shape and single-cell arrangement of F. tularensis subsp. novicida TCH2015 may facilitate its motility and nutrient absorption in aquatic settings. As a member of the Francisella genus, this strain shares characteristics common to its relatives, although specific pathogenic properties and interactions with host organisms are not detailed here. The aerobic nature of this strain points to a reliance on oxygen-dependent metabolic pathways, which may influence its distribution and survival in various aquatic environments.↵↵Overall, understanding the ecological niche of F. tularensis subsp. novicida strain TCH2015 contributes to a broader comprehension of the ecological roles of Francisella species in aquatic ecosystems, particularly their potential interactions with other microorganisms and environmental factors that may influence their dynamics and distribution." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 264 NZ_CP021490.1 Bac0016552 Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 "Acetobacter pasteurianus subsp. pasteurianus strain SRCM101342 is a Gram-negative, nonsporulating bacterium that thrives as a chemoheterotroph, primarily utilizing organic compounds for energy. This strain is optimally active at a temperature of 30.0°C and exhibits aerobic respiration, indicating a requirement for oxygen in its metabolic processes. Isolated from dairy environments, A. pasteurianus subsp. pasteurianus plays a significant role in the fermentation processes of dairy products, contributing to the production of acetic acid and other metabolites that influence flavor and preservation.↵↵The strain's ability to grow in aerobic conditions suggests that it may be particularly well-suited for environments rich in organic substrates, such as those found in the dairy industry, where oxygen availability is often sufficient. The nonsporulating nature of this strain indicates a reliance on favorable conditions for survival and reproduction, which may limit its resilience in harsh environments compared to sporulating bacteria. The ecological role of A. pasteurianus subsp. pasteurianus in dairy fermentation highlights its potential utility in biotechnological applications, such as the enhancement of food preservation and flavor development in fermented dairy products. Further studies could elucidate the specific metabolic pathways utilized by this strain, contributing to the understanding of its functional capabilities within the microbiome of dairy environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pasteurianus Negative No 1 Aerobic 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 481145 NZ_CP021511.1 Bac0016553 Acetobacter ascendens strain SRCM101447 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter ascendens 481146 NZ_CP021524.1 Bac0016554 Aeromonas salmonicida strain O23A "Aeromonas salmonicida strain O23A is a Gram-negative rod-shaped bacterium that functions as a heterotroph, utilizing organic compounds for energy. This strain is primarily found in aquatic environments, where it demonstrates the ability to thrive in both oxygen-rich and low-oxygen conditions, reflecting its status as a facultative anaerobe. ↵↵The morphology of A. salmonicida, characterized by its rod shape, is typical of many members of the Aeromonas genus, which are known to inhabit freshwater and marine ecosystems. The facultative anaerobic nature of strain O23A suggests a versatile metabolic capacity, enabling it to adapt to varying environmental oxygen levels. This adaptability may facilitate its survival in diverse aquatic habitats, which can exhibit fluctuating oxygen concentrations due to factors such as water temperature, organic matter decomposition, and microbial activity.↵↵Understanding the ecological role of Aeromonas salmonicida strain O23A within aquatic ecosystems could provide insights into its interactions with other microbial communities and its potential impact on nutrient cycling. The strain's heterotrophic lifestyle positions it as a participant in the breakdown of organic materials in aquatic systems, contributing to the overall health and dynamics of these environments. Such insights underscore the importance of studying diverse microbial strains to unravel the complexities of aquatic microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 645 NZ_CP021656.1 Bac0016555 Proteus mirabilis strain AR_0155 "Proteus mirabilis strain AR_0155 is a Gram-negative, nonsporulating rod that thrives optimally at 37.0°C and is classified as an aerobe, indicating its reliance on oxygen for metabolic processes. This strain is host-associated, suggesting a close relationship with host organisms, potentially playing a role in the microbial community within a specific host environment.↵↵Characteristically, P. mirabilis is known for its swarming motility, which facilitates its colonization and interaction with host tissues. This trait, combined with its optimal growth temperature, positions strain AR_0155 as well-adapted to conditions typically found within the warm-blooded hosts it associates with. The aerobe classification further implies that strain AR_0155 may engage in aerobic respiration, utilizing molecular oxygen to efficiently generate energy, which could be advantageous in nutrient-rich host environments.↵↵The ecological significance of P. mirabilis strain AR_0155 may extend beyond its basic metabolic functions; it could play a role in the microbiome dynamics of its host, potentially influencing host health and homeostasis. Understanding such interactions could shed light on the broader implications of P. mirabilis in microbial communities and its potential impact on host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus mirabilis Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Free living Nonsporulating 584 NZ_CP021695.1 Bac0016556 Ralstonia pseudosolanacearum strain RS 476 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pseudosolanacearum 1310165 NZ_CP021763.1 Bac0016557 Stenotrophomonas sp. WZN-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. WZN-1 2005046 NZ_CP021768.1 Bac0016558 Acinetobacter baumannii strain A85 "Acinetobacter baumannii strain A85 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and has an optimal growth temperature of 37.0°C. As a chemoheterotrophic aerobe, this strain utilizes organic compounds as its energy source, reflecting its adaptation to diverse environments. A. baumannii is known to thrive in multiple habitats, which may include both clinical and non-clinical settings.↵↵The rod shape and aerobic nature of A. baumannii strain A85 suggest a potential capacity for survival in varying oxygen levels, a trait that could contribute to its resilience in fluctuating environments. The combination of its heterotrophic metabolism and ability to grow in diverse habitats indicates that this strain may play a role in nutrient cycling within its ecological niches. Furthermore, the presence of A. baumannii in multiple habitats highlights its ecological versatility, suggesting that it may occupy roles in both natural ecosystems and anthropogenic environments. This adaptability underscores the importance of further research into the ecological dynamics and potential interactions of A. baumannii strain A85 within its environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP021782.1 Bac0016559 Sinorhizobium meliloti strain M162 "Sinorhizobium meliloti strain M162 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolic activity. This strain is part of a diverse group of microorganisms that inhabit multiple environments, indicating its potential versatility in adapting to varying ecological niches.↵↵As an aerobic organism, S. meliloti strain M162 requires oxygen for its growth and metabolic processes, which positions it well in habitats where oxygen is readily available. Its rod shape is characteristic of many members within the Rhizobium genus, which are known for their symbiotic relationships with leguminous plants, particularly in nitrogen fixation. While the specific symbiotic capabilities of strain M162 are not detailed here, the genus is generally recognized for its ability to establish root nodules in host plants, thereby enhancing soil fertility through biological nitrogen fixation.↵↵The ecological implications of S. meliloti strain M162 are noteworthy, as its presence in diverse habitats underscores its potential role in soil health and plant growth. Its ability to thrive in multiple environments may contribute to the resilience of ecosystems, particularly in agricultural settings where legumes are cultivated. This adaptability suggests that S. meliloti strain M162 may have significant implications for sustainable agricultural practices and soil management strategies." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 382 NZ_CP021818.1 Bac0016560 Anoxybacillus flavithermus strain 52-1A "Anoxybacillus flavithermus strain 52-1A is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and demonstrates facultative aerobic metabolism. This strain thrives optimally at a temperature of 60.0°C, indicating its adaptation to a thermophilic environment. The specialized habitat of Anoxybacillus flavithermus strain 52-1A suggests a niche that may be characterized by high temperatures, possibly within geothermal or hot spring ecosystems.↵↵As a sporulating organism, this strain possesses the ability to form resilient spores that can endure extreme conditions, thereby facilitating survival and proliferation in its specialized habitat. The facultative aerobe characteristic allows it to switch between aerobic and anaerobic metabolic pathways, enhancing its adaptability to varying oxygen levels in its environment. ↵↵The unique combination of thermophilicity and sporulation in Anoxybacillus flavithermus strain 52-1A may contribute to its ecological role in biogeochemical cycling in high-temperature environments, where it could play a part in the degradation of organic materials or in the production of bioactive compounds. Understanding the physiological traits of this strain can provide insights into microbial diversity and functionality in extreme habitats." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus flavithermus Positive Rod Yes 1 1 Facultative aerobe 60 Thermophilic Specialized Free living Sporulating 33934 NZ_CP021838.1 Bac0016561 Helicobacter apodemus strain SCJK1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter apodemus 135569 NZ_CP021886.1 Bac0016562 Pectobacterium versatile strain SCC1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium versatile 2488639 NZ_CP021894.1 Bac0016563 Erythrobacter sp. KY5 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter sp. KY5 2011159 NZ_CP021912.1 Bac0016564 Methylophaga nitratireducenticrescens strain GP59 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga nitratireducenticrescens 754476 NZ_CP021974.1 Bac0016565 Vibrio anguillarum strain 87-9-116 "Vibrio anguillarum strain 87-9-116 is a Gram-negative, curved-shaped bacterium that exists as single cells. This strain is nonsporulating and relies on heterotrophic metabolism for its energy needs, indicating its dependence on organic compounds as a carbon source. It is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which may facilitate its survival in various ecological niches.↵↵Notably, V. anguillarum strain 87-9-116 is host-associated, suggesting a close relationship with specific hosts, potentially influencing its ecological role in those environments. The ability to adapt to changing oxygen levels may provide this strain with a competitive advantage in fluctuating habitats, such as those found in aquatic ecosystems where oxygen levels can vary due to biological activity or environmental conditions.↵↵This adaptability and host association underscore the importance of V. anguillarum strain 87-9-116 in the microbial community dynamics, potentially contributing to nutrient cycling and interactions within its habitat. Understanding the specific ecological roles of such strains can deepen our insights into microbial interactions and their implications in broader ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 NZ_CP021981.1 Bac0016566 Brevundimonas diminuta strain BZC3 "Brevundimonas diminuta strain BZC3 is a Gram-negative, anaerobic bacterium characterized by its unique metabolic requirements. As an anaerobe, this strain thrives in environments devoid of oxygen, which suggests a potential adaptation to specific ecological niches where oxygen levels are limited. The Gram-negative cell wall structure of B. diminuta strain BZC3 implies the presence of an outer membrane that may contribute to its resilience in various environments.↵↵This strain may be of interest for its potential roles in biogeochemical cycles, particularly in anaerobic conditions, where it might participate in the breakdown of organic matter or contribute to the metabolism of other microorganisms. The ability to survive and grow in environments lacking oxygen could allow B. diminuta strain BZC3 to interact with and influence anaerobic microbial communities, potentially affecting nutrient cycling and energy flow within those ecosystems.↵↵Given the increasing interest in anaerobic microorganisms for applications in biotechnology and environmental science, understanding the physiological and biochemical properties of Brevundimonas diminuta strain BZC3 could provide insights into its potential uses in bioremediation or waste treatment processes, where anaerobic conditions are prevalent. This strain exemplifies how microbial diversity can shape ecological functions in oxygen-depleted environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas diminuta Negative Anaerobe 293 NZ_CP021995.1 Bac0016567 Capnocytophaga endodontalis strain ChDC OS43 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga endodontalis 2708117 NZ_CP022022.1 Bac0016568 Escherichia coli O157 strain FDAARGOS_293 "Escherichia coli O157 strain FDAARGOS_293 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of many warm-blooded hosts, indicating its strong association with host environments. As a facultative anaerobe, E. coli O157 can adapt to both aerobic and anaerobic conditions, enhancing its survival in diverse habitats within the host. ↵↵The strain is predominantly found in host-associated habitats, suggesting a close relationship with its hosts, which may include humans and animals. This association likely plays a significant role in its ecological niche, influencing its growth dynamics and interactions within the microbiota of the host. ↵↵Overall, the adaptability of E. coli O157 strain FDAARGOS_293 to varying oxygen levels and its optimal growth temperature reflect its evolutionary strategies for colonization and persistence in host-associated environments, underscoring the important role such traits play in the survival and ecological success of this microbe." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 1045010 NZ_CP022051.2 Bac0016569 Corynebacterium jeikeium strain FDAARGOS_328 "Corynebacterium jeikeium strain FDAARGOS_328 is a Gram-positive, rod-shaped bacterium that typically exists as single cells. As a facultative aerobe, this strain can thrive in both the presence and absence of oxygen, utilizing a variety of organic compounds as a chemoorganotrophic energy source. The ability to grow in diverse habitats suggests that C. jeikeium strain FDAARGOS_328 possesses metabolic versatility, enabling it to adapt to different environmental conditions. ↵↵This adaptability may be particularly relevant in human-associated environments, where it could potentially participate in the microbiota of various niches. The presence of C. jeikeium in multiple habitats underscores its ecological flexibility, which may facilitate interactions with other microbial communities. Further study could elucidate the specific roles that this strain plays in its environments, potentially contributing to our understanding of microbial dynamics in both natural and anthropogenic settings." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium Positive Rod No 1 1 Facultative aerobe Chemoorganotroph Mesophilic Multiple Free living Singles 38289 NZ_CP022054.2 Bac0016570 Burkholderia cepacia strain FDAARGOS_345 "Burkholderia cepacia strain FDAARGOS_345 is a Gram-negative bacterium that exhibits microaerophilic growth characteristics, indicating that it thrives in environments with reduced oxygen levels. This strain is part of the Burkholderia genus, which is known for its metabolic versatility and ability to adapt to various ecological niches. ↵↵As a microaerophile, B. cepacia strain FDAARGOS_345 is likely to be found in environments where oxygen is present but at lower concentrations than atmospheric levels, such as waterlogged soils or in association with certain plant roots. The Gram-negative nature of this strain suggests the presence of a complex cell wall structure, which includes an outer membrane containing lipopolysaccharides, a feature that can influence its interactions with other microorganisms and host organisms.↵↵While specific pathogenicity details for strain FDAARGOS_345 are not provided, species within the Burkholderia cepacia complex are often studied due to their implications in clinical settings, particularly in patients with cystic fibrosis. However, the ecological roles of these strains, including their potential for bioremediation and plant growth promotion, are also significant. ↵↵B. cepacia strain FDAARGOS_345 thus represents a microbe of interest not only for its potential clinical implications but also for its ecological contributions, particularly in nutrient cycling and organic matter decomposition in microaerophilic environments. Further studies could elucidate the specific roles and impacts of this strain in its native habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 NZ_CP022081.2 Bac0016571 Vibrio anguillarum strain JLL237 "Vibrio anguillarum strain JLL237 is a Gram-negative, curved-shaped bacterium that exists as single cells and exhibits facultative anaerobic metabolism, utilizing a heterotrophic energy source. As a nonsporulating organism, JLL237 is adapted to a host-associated habitat, indicating a potential relationship with specific hosts or environments that support its growth and survival.↵↵The curved morphology of V. anguillarum JLL237 is characteristic of the Vibrio genus, which often includes species associated with aquatic environments. The facultative anaerobic nature of this strain suggests that it can thrive in varying oxygen conditions, which may enhance its adaptability to different ecological niches where oxygen availability fluctuates, such as in the gastrointestinal tracts of marine organisms or in sediment layers.↵↵Given its heterotrophic lifestyle, V. anguillarum JLL237 likely plays a role in the decomposition of organic matter in its habitat, contributing to nutrient cycling. This trait could indicate a potential involvement in symbiotic relationships with host organisms, where it may aid in digestion or nutrient acquisition. The ability to thrive in host-associated environments further emphasizes the ecological significance of this strain, as it may help maintain the health of its associated ecosystems while highlighting the intricate interactions between microorganisms and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 NZ_CP022101.1 Bac0016572 Vibrio anguillarum strain CNEVA NB11008 "Vibrio anguillarum strain CNEVA NB11008 is a Gram-negative, curved-shaped bacterium that exists primarily in a single-cell arrangement. This strain is nonsporulating and exhibits a facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. As a heterotrophic organism, V. anguillarum CNEVA NB11008 relies on organic compounds for its energy source, which supports its survival in host-associated habitats.↵↵The ecological niche of this strain indicates a specialized relationship with its host, suggesting it may play a role in the microbial community dynamics within its environment. Given its association with hosts, V. anguillarum CNEVA NB11008 may contribute to the complex interactions that define host microbiomes, potentially influencing nutrient cycling and microbial diversity. Further studies could illuminate its specific interactions with host organisms and its ecological significance in aquatic environments where Vibrio species are commonly found." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 NZ_CP022103.1 Bac0016573 Nitrospirillum viridazoti CBAmc Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Nitrospirillum Nitrospirillum viridazoti 1441467 NZ_CP022110.1 Bac0016574 Laribacter hongkongensis strain HLGZ1 "Laribacter hongkongensis strain HLGZ1 is a Gram-negative bacterium characterized by its unique morphological and biochemical traits. As a member of the Laribacter genus, this strain exhibits the typical features associated with Gram-negative bacteria, including a thin peptidoglycan layer and an outer membrane composed of lipopolysaccharides. The specific environmental niche and metabolic capabilities of strain HLGZ1 remain to be fully characterized, but the genus Laribacter is primarily associated with aquatic environments, suggesting that this strain may play a role in nutrient cycling within its habitat.↵↵The Gram-negative nature of Laribacter hongkongensis strain HLGZ1 implies potential implications for its interactions with other microorganisms and its resistance mechanisms, particularly concerning antibiotics and environmental stressors. Understanding the physiological and ecological roles of this strain could provide insights into its function within aquatic ecosystems, particularly in relation to nutrient dynamics and microbial community interactions.↵↵Overall, the presence of Laribacter hongkongensis strain HLGZ1 in aquatic environments may contribute to the microbial diversity and ecological balance, highlighting the importance of Gram-negative bacteria in various biogeochemical processes. Further research is warranted to elucidate the specific ecological roles and interactions of this strain within its native habitat." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Aquaspirillaceae Laribacter Laribacter hongkongensis negative 168471 NZ_CP022115.1 Bac0016575 Salmonella enterica subsp. enterica serovar Macclesfield str. "Salmonella enterica subsp. enterica serovar Macclesfield is a Gram-negative, spirilla-shaped bacterium that typically appears in chains or as single cells. This microbe thrives optimally at a temperature of 37.0°C, making it well-suited for growth in host-associated environments, where it can exploit various organic compounds as a chemoorganotrophic energy source. ↵↵As a microaerophilic organism, S. enterica serovar Macclesfield requires reduced levels of oxygen for optimal growth, which aligns with its adaptation to the intestinal tracts of warm-blooded hosts. Such characteristics suggest a specific ecological niche that may be associated with the gastrointestinal microbiota of its hosts. Understanding the metabolic and environmental preferences of this strain can provide insights into its role within host-associated microbiomes and its interactions with other microbial species. Further research might elucidate its ecological significance as part of the complex interplay within host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1242107 NZ_CP022117.1 Bac0016576 Salmonella bongori serovar 66:z41:- str. SA19983605 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella bongori 1243617 NZ_CP022120.1 Bac0016577 Methylovulum psychrotolerans strain HV10_M2 "Methylovulum psychrotolerans strain HV10_M2 is a Gram-negative, spherical bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 25.0°C. This strain is part of the Methylovulum genus, known for its ability to utilize methanol as a carbon and energy source, which is a trait characteristic of methylotrophic bacteria. The Gram-negative cell wall structure contributes to its resilience in various environments, although the specific ecological niches occupied by this strain have not been detailed.↵↵Given its optimal growth temperature, Methylovulum psychrotolerans strain HV10_M2 may be well-adapted to moderate temperature habitats, possibly including environments that experience seasonal temperature fluctuations. The aerobic nature of this organism implies a reliance on oxygen for its metabolic processes, which could influence its distribution in microenvironments where oxygen availability varies.↵↵An intriguing aspect of this strain is its psychrotolerant capability, suggesting that it may survive and even thrive in cooler conditions, which could provide insights into its potential roles in biogeochemical cycles, especially in cold habitats where methanol is present. Understanding this organism's metabolic pathways may also have implications for biotechnological applications, particularly in the context of bioremediation and carbon cycling in cold environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylovulum Methylovulum psychrotolerans Gram-negative sphere non-motile aerobic 25 mesophilic 1704499 NZ_CP022129.1 Bac0016578 Francisella halioticida strain DSM 23729 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella halioticida 549298 NZ_CP022132.1 Bac0016579 Citrobacter freundii strain 705SK3 "Citrobacter freundii strain 705SK3 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration. This strain is nonsporulating and is typically found in various environments, including hospital sewage, the intestinal tract of humans and animals, general sewage, soil, and surface waters. ↵↵The presence of Citrobacter freundii in diverse habitats, particularly in sewage and hospital environments, suggests its role in the degradation of organic matter and potential involvement in nutrient cycling. The strain's facultative anaerobic nature allows it to thrive in both aerobic and anaerobic conditions, indicating a versatile metabolic capability that may contribute to its survival and proliferation in fluctuating environmental conditions. ↵↵Understanding the ecological role of Citrobacter freundii strain 705SK3 can provide insights into its function within microbial communities, particularly in relation to wastewater treatment processes and its potential impact on the microbiome of the intestinal tract. Further investigation into the strain's interactions within these environments could shed light on its contributions to microbial dynamics and potential applications in bioremediation or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NZ_CP022151.1 Bac0016580 Microbacterium sp. PM5 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. PM5 2014534 NZ_CP022162.1 Bac0016581 Alloyangia pacifica strain YSBP01 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Alloyangia Alloyangia pacifica 311180 NZ_CP022189.1 Bac0016582 Celeribacter ethanolicus strain TSPH2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter ethanolicus 1758178 NZ_CP022196.1 Bac0016583 Pseudomonas oryzihabitans strain MS8 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas oryzihabitans 47885 NZ_CP022198.1 Bac0016584 Burkholderia thailandensis strain FDAARGOS_241 "Burkholderia thailandensis strain FDAARGOS_241 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial habitats and exhibits aerobic metabolic characteristics. This strain is optimally adapted to environmental conditions with a temperature of approximately 25.0 degrees Celsius, suggesting a preference for moderate climates typical of soil environments. ↵↵The Gram-negative classification indicates that this microbe possesses a distinctive cell wall structure, which may confer specific advantages in its terrestrial ecosystem, such as resilience to certain antibiotics and chemicals. Its rod shape is a common morphological feature among bacteria, potentially facilitating its motility and nutrient uptake in diverse soil matrices.↵↵Burkholderia thailandensis is known for its versatility in utilizing various organic compounds, which may play a role in the degradation of pollutants in its terrestrial environment. This trait highlights its potential ecological significance, particularly in bioremediation applications where the breakdown of harmful substances is necessary.↵↵Overall, Burkholderia thailandensis strain FDAARGOS_241 exemplifies the adaptability of soil-dwelling microbes to specific environmental conditions, underscoring its role in nutrient cycling and ecological balance within terrestrial ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial Free living 57975 NZ_CP022214.1 Bac0016585 Xanthomonas citri pv. vignicola strain CFBP7111 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 473426 NZ_CP022263.1 Bac0016586 Shewanella marisflavi strain EP1 "Shewanella marisflavi strain EP1 is a Gram-negative, non-spore-forming rod that exhibits anaerobic growth, with an optimal temperature for growth at 32.0°C. This microbe is part of the Shewanella genus, which is known for its diverse metabolic capabilities, particularly in anaerobic environments.↵↵As a member of the Shewanella genus, S. marisflavi strain EP1 is likely to possess the ability to reduce various electron acceptors, which could include metals and other compounds, facilitating biogeochemical cycling in its habitat. The anaerobic growth requirement indicates that this strain may thrive in environments with limited oxygen availability, potentially contributing to organic matter degradation in sediments or other anoxic ecosystems.↵↵The optimal growth temperature of 32.0°C suggests that S. marisflavi strain EP1 is well-suited for marine or brackish environments, where temperatures often fall within this range. This temperature preference aligns with the ecological niche of other Shewanella species, which are commonly found in aquatic environments.↵↵Understanding the traits of S. marisflavi strain EP1 enhances our knowledge of microbial diversity and metabolic processes in anaerobic environments. The unique ability of this strain to thrive under these specific conditions may play a crucial role in nutrient cycling and the degradation of organic matter in marine ecosystems, emphasizing the ecological importance of anaerobic microorganisms in maintaining the health and function of these environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella marisflavi Gram-negative rod anaerobic 32 mesophilic non-spore-forming 260364 NZ_CP022272.1 Bac0016587 Citrobacter freundii strain 18-1 "Citrobacter freundii strain 18-1 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe and is nonsporulating. This strain is typically found in diverse habitats, including hospital sewage, the intestinal tract, various sewage environments, soil, and surface waters. The ability of C. freundii strain 18-1 to thrive in both aerobic and anaerobic conditions allows it to occupy various ecological niches, adapting to fluctuating oxygen levels commonly encountered in its environments.↵↵Given its presence in hospital sewage and the intestinal tract, C. freundii strain 18-1 may play a role in microbial communities associated with human health and environmental sanitation. The strain's adaptability to diverse habitats suggests that it may engage in complex interactions with other microorganisms, potentially influencing nutrient cycling and organic matter decomposition in its ecosystems. This characteristic highlights the importance of C. freundii strain 18-1 in both clinical and environmental contexts, where it may contribute to the maintenance of microbial diversity and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NZ_CP022273.1 Bac0016588 Acinetobacter johnsonii strain IC001 "Acinetobacter johnsonii strain IC001 is a Gram-negative bacterium that has been identified within the ATCC skin microbiome and is also found in guano. This strain exhibits an aerobic metabolism, indicating that it requires oxygen for growth and survival. ↵↵As a member of the Acinetobacter genus, A. johnsonii strain IC001 contributes to the microbial diversity of its habitats, playing a potential role in the ecological balance of skin-associated microbiomes as well as in environments enriched with organic matter, such as guano deposits. The presence of this strain in both human-associated and natural environments suggests its adaptability and resilience, traits that may allow it to thrive under varying conditions.↵↵Additionally, the isolation of A. johnsonii strain IC001 from the skin microbiome underscores the complexity and dynamic nature of microbial communities on human surfaces, highlighting the potential interactions between skin flora and environmental microorganisms. Understanding the specific roles of such strains can provide insights into their contributions to skin health and microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe ATCC skin microbiome; guano 40214 NZ_CP022300.1 Bac0016589 Alcanivorax sp. N3-2A Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Alcanivoracaceae Alcanivorax Alcanivorax sp. N3-2A 2014542 NZ_CP022307.1 Bac0016590 Arthrobacter sp. PM3 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. PM3 2017685 NZ_CP022314.1 Bac0016591 Brachybacterium avium strain VR2415 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium avium 2017485 NZ_CP022317.1 Bac0016592 Campylobacter avium LMG 24591 "Campylobacter avium LMG 24591 is a Gram-negative, microaerophilic bacterium characterized by its curved to spiral shape. This organism, belonging to the Campylobacter genus, is noted for its preference for environments with reduced oxygen levels, a trait that influences its growth conditions and ecological niches. The unique morphology of C. avium, with its distinctive spiral form, may facilitate its motility, which is often enhanced by the presence of a single polar flagellum, although such structural details are not specified in the current data.↵↵The microaerophilic nature of C. avium suggests that it thrives in environments where oxygen concentration is lower than atmospheric levels, such as the gastrointestinal tracts of birds, which are common hosts for Campylobacter species. This adaptation may reflect the organism's ecological role within avian microbiomes, potentially contributing to the complex interactions among gut flora and the host. Understanding the specific environmental preferences and physiological traits of C. avium could provide insights into its ecological dynamics and interactions within avian hosts. Further research may elucidate its role in the microbial community and its impact on avian health and metabolism." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter avium Gram-negative curved/spiral microaerophile 522484 NZ_CP022347.1 Bac0016593 Paraphotobacterium marinum strain NSCS20N07D Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Paraphotobacterium Paraphotobacterium marinum 1755811 NZ_CP022355.1 Bac0016594 Shewanella bicestrii strain JAB-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella bicestrii 2018305 NZ_CP022359.1 Bac0016595 Azospirillum sp. TSH58 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSH58 664962 NZ_CP022364.1 Bac0016596 Capnocytophaga stomatis strain H2177 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga stomatis 1848904 NZ_CP022387.1 Bac0016597 Capnocytophaga canimorsus strain H5594 "Capnocytophaga canimorsus strain H5594 is a Gram-negative, nonsporulating rod-shaped bacterium classified within the genus Capnocytophaga. This strain exhibits a microaerophilic oxygen requirement, indicating that it thrives in environments with reduced oxygen levels, which may be characteristic of its natural habitats. As a chemoheterotroph, C. canimorsus strain H5594 derives its energy from organic compounds, further supporting its role in diverse ecological niches.↵↵Optimal growth occurs at 37.0°C, a temperature that aligns with the physiological conditions typically encountered in warm-blooded hosts. The bacterium is known to inhabit multiple environments, suggesting adaptability to various ecological settings, potentially including both commensal and pathogenic associations in host organisms.↵↵The physiological traits of C. canimorsus strain H5594 underscore its potential role in the microbiota of domestic animals, particularly canines, which may serve as reservoirs for this microbe. Understanding the ecological dynamics and interactions of this strain within its habitats could provide insights into its contributions to microbial communities and its potential influence on host health." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga canimorsus Negative Rod No 1 Microaerophilic 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 28188 NZ_CP022388.1 Bac0016598 Helicobacter pylori strain G272 "Helicobacter pylori strain G272 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at 37.0°C, reflecting its adaptation to host-associated environments, typically found in the gastric mucosa of humans and other mammals. The microaerophilic nature of H. pylori indicates its requirement for reduced oxygen levels, which is critical for its metabolic processes and survival within the acidic environment of the stomach.↵↵H. pylori is well-studied for its role in gastrointestinal health, and while this description does not delve into pathogenicity, the strain's habitat suggests a close association with host physiology. The unique spiral morphology of H. pylori is thought to facilitate its motility through viscous gastric mucus, enhancing its ability to colonize and persist in the stomach lining. ↵↵The ecological insight that emerges from the study of H. pylori strain G272 is its potential role in influencing host immune responses and microbial community dynamics in the gastrointestinal tract, which may have implications for understanding the balance between health and disease in the host. Further research on this strain could provide deeper insights into its interactions within the complex ecosystem of the gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP022409.1 Bac0016599 Pseudosulfitobacter pseudonitzschiae strain SMR1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pseudosulfitobacter Pseudosulfitobacter pseudonitzschiae 1402135 NZ_CP022415.1 Bac0016600 Vitreoscilla filiformis strain ATCC 15551 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Vitreoscilla Vitreoscilla filiformis 63 NZ_CP022424.1 Bac0016601 Aeromonas salmonicida subsp. pectinolytica 34mel "Aeromonas salmonicida subsp. pectinolytica 34mel is a Gram-negative, rod-shaped bacterium that exhibits heterotrophic metabolism and thrives in aquatic environments. As a facultative anaerobe, this microbe can adapt to both aerobic and anaerobic conditions, which allows it to occupy a variety of niches within freshwater ecosystems. ↵↵The heterotrophic nature of A. salmonicida subsp. pectinolytica 34mel indicates its reliance on organic compounds for energy, suggesting a role in the decomposition of organic matter in aquatic habitats. This metabolic versatility enhances its ecological adaptability, enabling it to utilize different substrates depending on the availability of oxygen and nutrients. ↵↵Overall, the combination of its Gram-negative structure, rod shape, and flexible energy acquisition strategies positions A. salmonicida subsp. pectinolytica 34mel as an important player in aquatic microbial communities, potentially influencing nutrient cycling and the dynamics of microbial interactions in its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 1324960 NZ_CP022426.1 Bac0016602 Nocardiopsis dassonvillei strain HZNU_N_1 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis dassonvillei No 1 1 Aerobic Mesophilic Multiple Free living 2014 NZ_CP022434.1 Bac0016603 Streptomyces peucetius subsp. caesius ATCC 27952 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces peucetius 316280 NZ_CP022438.1 Bac0016604 Klebsiella sp. LY Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. LY 2015795 NZ_CP022441.1 Bac0016605 Sinomonas sp. R1AF57 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Sinomonas Sinomonas sp. R1AF57 2020377 NZ_CP022463.1 Bac0016606 Ralstonia solanacearum strain HA4-1 "Ralstonia solanacearum strain HA4-1 is a Gram-negative bacterium commonly found in fresh water, soil, and aquatic environments. This strain is part of a larger group known for its diverse ecological presence, where it can thrive in both terrestrial and aquatic habitats. As a member of the Ralstonia genus, it exhibits characteristics typical of many bacteria within this family, including adaptability to various environmental conditions.↵↵The Gram-negative nature of R. solanacearum HA4-1 suggests a complex cell wall structure, which may influence its interactions with other microorganisms and its survival in different habitats. The presence of this strain in fresh water and soil indicates its potential role in nutrient cycling and interactions within microbial communities in these environments. ↵↵Moreover, the ability of R. solanacearum HA4-1 to inhabit both water and soil suggests that it may play a significant role in the dynamics of these ecosystems, potentially influencing the microbial diversity and functioning of these habitats. Understanding the ecological role of R. solanacearum HA4-1 in fresh water and soil could provide insights into its interactions with other organisms and its contribution to biogeochemical processes." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 NZ_CP022481.1 Bac0016607 Qipengyuania flava strain VG1 "Qipengyuania flava strain VG1 is a rod-shaped, aerobic bacterium isolated from a marine environment. This strain exhibits a preference for oxygen-rich habitats, indicating its metabolic functions are likely adapted to aerobic conditions. The morphological characteristics of Qipengyuania flava strain VG1, specifically its rod shape, suggest potential implications for its motility and surface interaction capabilities in the marine ecosystem.↵↵As an inhabitant of marine environments, Qipengyuania flava strain VG1 may play a role in various biogeochemical processes, including nutrient cycling and organic matter decomposition. The aerobic nature of this strain highlights its potential involvement in the oxidation of organic compounds, which is critical for maintaining the health and balance of marine ecosystems. This trait positions Qipengyuania flava strain VG1 as a candidate for further investigation into its ecological roles, particularly in the degradation of organic materials and its interactions with other microbial communities in marine settings. ↵↵Understanding the specific adaptations and ecological functions of Qipengyuania flava strain VG1 may provide insights into the complexities of microbial life in oceanic environments and contribute to broader knowledge regarding marine biodiversity and ecosystem function." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Qipengyuania Qipengyuania flava Rod aerobic Marine 192812 NZ_CP022528.1 Bac0016608 Spiroplasma corruscae strain EC-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma corruscae microaerophile 216934 NZ_CP022535.1 Bac0016609 Antarctobacter heliothermus strain SMS3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Antarctobacter Antarctobacter heliothermus 74033 NZ_CP022541.1 Bac0016610 Sphingorhabdus sp. YGSMI21 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Sphingorhabdus Sphingorhabdus sp. YGSMI21 2077182 NZ_CP022548.1 Bac0016611 Pseudomonas monteilii strain B5 "Pseudomonas monteilii strain B5 is a Gram-negative, rod-shaped bacterium classified as a chemoheterotroph, primarily inhabiting soil environments. This strain does not undergo sporulation, which may influence its adaptability and survival in various soil conditions. As an aerobe, P. monteilii strain B5 requires oxygen for its metabolic processes, utilizing organic compounds as energy sources. ↵↵The presence of P. monteilii in soil ecosystems suggests its potential role in nutrient cycling and organic matter decomposition, contributing to the maintenance of soil health. Its chemoheterotrophic lifestyle enables it to participate in the breakdown of complex organic materials, thereby facilitating the availability of nutrients for other soil microorganisms and plants. This functional capacity underscores the importance of Pseudomonas species in biogeochemical processes within terrestrial ecosystems, highlighting their ecological significance in promoting soil fertility and sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monteilii Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 76759 NZ_CP022563.1 Bac0016612 Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1 Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. GSB1 281093 NZ_CP022571.1 Bac0016613 Gordonia rubripertincta strain CWB2 "Gordonia rubripertincta strain CWB2 is a Gram-positive, aerobic bacterium characterized by its unique metabolic capabilities and environmental adaptability. As a member of the genus Gordonia, this strain exhibits traits commonly associated with soil-dwelling microorganisms, including the ability to degrade a variety of organic compounds. The aerobic nature of CWB2 indicates its reliance on oxygen for growth, which suggests its potential role in biogeochemical cycles, particularly in environments where oxygen is readily available.↵↵The Gram-positive nature of CWB2 is indicative of its cellular structure, which is characterized by a thick peptidoglycan layer in the cell wall. This structural feature may confer certain advantages, such as increased resistance to desiccation and the ability to survive in nutrient-poor conditions. Furthermore, Gordonia species are often noted for their ability to metabolize complex hydrocarbons, which may hint at a potential utility in bioremediation applications.↵↵Overall, Gordonia rubripertincta strain CWB2 exemplifies a microbe that plays an important role in its ecological niche, particularly in environments where organic pollutants are present. Its metabolic versatility and aerobic nature highlight its significance in maintaining the health of ecosystems that are subject to anthropogenic influences. The strain's ability to adapt to varying organic substrates could further enhance our understanding of microbial interactions and their contributions to environmental sustainability." Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia rubripertincta Positive Aerobe 36822 NZ_CP022580.1 Bac0016614 Porphyrobacter sp. HT-58-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. HT-58-2 2023229 NZ_CP022600.1 Bac0016615 Ochrobactrum quorumnocens strain A44 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum quorumnocens 271865 NZ_CP022602.1 Bac0016616 Priestia megaterium strain SR7 "Priestia megaterium strain SR7 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its aerobic metabolism. This strain is notable for its versatile habitat, indicating a capacity to thrive in diverse environmental conditions. As a sporulating organism, P. megaterium SR7 can produce spores that enable it to endure adverse conditions, contributing to its survival and persistence in various ecosystems.↵↵The aerobic nature of this strain suggests that it relies on oxygen for its metabolic processes, which may also influence its ecological interactions and niche preferences. The ability to grow in multiple habitats may provide insights into its adaptability and potential utility in biotechnological applications, such as bioremediation or industrial fermentation processes. The traits of P. megaterium SR7 highlight the organism's resilience and versatility, which could be further explored to understand its role in nutrient cycling and its contributions to microbial communities in various environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 NZ_CP022676.1 Bac0016617 Streptomyces formicae strain KY5 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces formicae 1616117 NZ_CP022685.1 Bac0016618 Citrobacter farmeri strain AUSMDU00008141 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter farmeri 67824 NZ_CP022695.1 Bac0016619 Acetobacter tropicalis strain BDGP1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter tropicalis 104102 NZ_CP022700.1 Bac0016620 Erwinia persicina strain B64 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia persicina 55211 NZ_CP022725.1 Bac0016621 Vibrio qinghaiensis strain Q67 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio qinghaiensis 2025808 NZ_CP022741.1 Bac0016622 Mucilaginibacter xinganensis strain BJC16-A31 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter xinganensis 1234841 NZ_CP022743.1 Bac0016623 Streptomyces lincolnensis strain LC-G Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lincolnensis 1915 NZ_CP022744.1 Bac0016624 Sphingobium xenophagum strain C1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium xenophagum 121428 NZ_CP022746.1 Bac0016625 Actinopolyspora erythraea strain YIM 90600 Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora erythraea 414996 NZ_CP022752.1 Bac0016626 Parabacteroides sp. CT06 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. CT06 2025876 NZ_CP022754.1 Bac0016627 Ralstonia solanacearum strain T98 "Ralstonia solanacearum strain T98 is a Gram-negative bacterium primarily found in freshwater environments, soil, and water. This strain is part of a diverse group of bacteria known for their adaptability to various ecological niches. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer and an outer membrane, which may confer certain advantages in environmental persistence and resistance to antimicrobial agents.↵↵The habitat of R. solanacearum strain T98 suggests that it can thrive in diverse aquatic and terrestrial ecosystems. In freshwater, this bacterium may interact with other microbial communities, potentially playing a role in nutrient cycling and organic matter decomposition. Its presence in soil indicates a possible involvement in soil health and microbial diversity, contributing to the overall functioning of terrestrial ecosystems.↵↵The ability of R. solanacearum strain T98 to inhabit both aquatic and soil environments underscores its ecological versatility. Such adaptability may facilitate its survival during environmental fluctuations, allowing it to exploit various nutrient sources. Understanding the ecological roles and interactions of this strain within its habitats can provide insights into microbial community dynamics and the potential implications for environmental health. Further research could elucidate the specific contributions of R. solanacearum strain T98 to its ecosystems, particularly in relation to nutrient cycling and interactions with other microorganisms." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 NZ_CP022759.1 Bac0016628 Ralstonia solanacearum strain T78 "Ralstonia solanacearum strain T78 is a Gram-negative bacterium that has been isolated from fresh water, soil, and other aquatic environments. This strain is part of a diverse group of bacteria known for their adaptability to various habitats, which may contribute to its survival and potential interactions within these ecosystems. ↵↵The Gram-negative cell wall structure of R. solanacearum strain T78 consists of a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structure is characteristic of many environmental bacteria and may facilitate the strain's resilience in fluctuating conditions typical of freshwater and soil environments.↵↵The habitat of this strain suggests its potential role in nutrient cycling and interactions with other microbial communities. Its presence in both aquatic and terrestrial ecosystems may indicate its versatility and ability to thrive in diverse conditions, which is crucial for its ecological role. Understanding such traits may provide insights into the strain's interactions with its environment, including potential influences on plant health and soil dynamics.↵↵The ability of R. solanacearum strain T78 to inhabit various ecological niches underscores the importance of water and soil as reservoirs for microbial diversity and their roles in sustaining ecosystem functions. This adaptability may have implications for the management of agricultural practices and environmental health, particularly in regions where water and soil quality are critical for sustaining biodiversity." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia solanacearum negative Yes Fresh water; soil; water Plant 305 NZ_CP022765.1 Bac0016629 Klebsiella quasivariicola strain KPN1705 "Klebsiella quasivariicola strain KPN1705 is a nonsporulating, Gram-negative bacterium characterized as a chemoheterotroph, utilizing organic compounds as its primary energy source. This metabolic flexibility allows the strain to thrive in various environments where organic substrates are available. ↵↵As a member of the Klebsiella genus, K. quasivariicola exhibits traits common to many bacteria within this group, such as the ability to ferment sugars, which may contribute to its ecological adaptability. The Gram-negative cell wall structure of strain KPN1705, characterized by a thin peptidoglycan layer surrounded by an outer membrane, is essential for its interaction with environmental factors and potential host organisms.↵↵The nonsporulating nature of K. quasivariicola strain KPN1705 suggests a reliance on specific environmental conditions for survival and reproduction, as it does not form spores to withstand harsh environments. This characteristic may limit its ecological niches compared to sporulating bacteria, which can endure extreme conditions.↵↵Overall, the traits of K. quasivariicola strain KPN1705 indicate a bacterium well-adapted to environments rich in organic matter, where it may play a role in nutrient cycling and the breakdown of complex organic compounds. Understanding the ecological roles and metabolic capabilities of such microbes can provide valuable insights into their contributions to microbial communities and ecosystem functioning." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasivariicola Negative No 1 Chemoheterotroph Mesophilic Nonsporulating 2026240 NZ_CP022825.1 Bac0016630 Maribacter cobaltidurans strain B1 "Maribacter cobaltidurans strain B1 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism, thriving at an optimal temperature of 29.0°C. This strain is part of the genus Maribacter, which is known for its presence in marine environments, and its specific adaptations may contribute to its survival in such ecosystems. ↵↵The Gram-negative cell wall structure of Maribacter cobaltidurans strain B1 is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer advantages in resisting certain environmental stresses. The rod shape of this microbe may facilitate motility and nutrient absorption, enhancing its competitive edge in its natural habitat. ↵↵Given its aerobic requirement, this strain likely plays a role in biogeochemical cycles, particularly in the degradation of organic matter in oxygen-rich marine environments. The optimal growth temperature of 29.0°C suggests that Maribacter cobaltidurans strain B1 is well-adapted to temperate marine conditions, which may influence its metabolic pathways and interactions with other microbial communities. ↵↵Overall, the traits of Maribacter cobaltidurans strain B1 highlight its potential significance in marine microbial ecology, particularly in nutrient cycling processes where aerobic degradation is crucial for maintaining ecosystem health." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter cobaltidurans Gram-negative rod non-motile aerobic 29 mesophilic 1178778 NZ_CP022957.1 Bac0016631 Cytobacillus kochii strain BDGP4 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus kochii 859143 NZ_CP022984.1 Bac0016632 Mariniflexile sp. TRM1-10 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mariniflexile Mariniflexile rhizosphaerae 2027857 NZ_CP022985.1 Bac0016633 Pollutimonas thiosulfatoxidans strain YE3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pollutimonas Pollutimonas thiosulfatoxidans 2028345 NZ_CP022987.1 Bac0016634 Paraburkholderia aromaticivorans strain BN5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia aromaticivorans 2026199 NZ_CP022991.1 Bac0016635 Rhizobium sp. 11515TR strain 10195 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. 11515TR 2028343 NZ_CP023000.1 Bac0016636 Shewanella sp. WE21 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. WE21 2029986 NZ_CP023019.1 Bac0016637 Komagataeibacter saccharivorans strain CV1 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter saccharivorans 265959 NZ_CP023037.1 Bac0016638 Sinorhizobium sojae CCBAU 05684 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium sojae 716928 NZ_CP023067.1 Bac0016639 Enterococcus thailandicus strain a523 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus thailandicus 417368 NZ_CP023074.1 Bac0016640 Mycobacterium intracellulare strain FLAC0181 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 1767 NZ_CP023149.1 Bac0016641 Mycobacterium intracellulare subsp. chimaera strain FLAC0070 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare 222805 NZ_CP023153.1 Bac0016642 Mesoplasma chauliocola strain CHPA-2 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma chauliocola 216427 NZ_CP023173.1 Bac0016643 Acetobacter pomorum strain SH Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter pomorum 65959 NZ_CP023189.1 Bac0016644 Bacillus cereus strain HBL-AI "Bacillus cereus strain HBL-AI is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as an aerobic organism. This strain thrives optimally at a temperature of 25.0°C, indicating its preference for moderate environmental conditions. The ability to grow in multiple habitats suggests that B. cereus strain HBL-AI possesses versatile metabolic capabilities, allowing it to adapt to various ecological niches.↵↵The rod shape and chain arrangement of B. cereus strain HBL-AI may confer certain advantages in its natural environments, such as enhanced surface area for nutrient absorption and increased resilience in the presence of competing microorganisms. The aerobic nature of this strain implies that it relies on oxygen for metabolic processes, which could influence its distribution and interactions within its ecological niche. ↵↵Given its physiological traits, B. cereus strain HBL-AI could play a significant role in nutrient cycling within its habitats, potentially contributing to soil health or other biogeochemical processes. Further exploration of its ecological interactions and metabolic pathways may reveal insights into its functional role in microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP023245.1 Bac0016645 Serratia sp. MYb239 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. MYb239 2033438 NZ_CP023268.1 Bac0016646 Pseudomonas sp. MYb193 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MYb193 1827300 NZ_CP023269.1 Bac0016647 Pseudomonas lurida strain MYb11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lurida 244566 NZ_CP023272.1 Bac0016648 Sulfurospirillum diekertiae strain JPD-1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum diekertiae 1854492 NZ_CP023275.1 Bac0016649 Nostoc sp. CENA543 Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. CENA543 1869241 NZ_CP023279.1 Bac0016650 Variovorax boronicumulans strain J1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax boronicumulans 436515 NZ_CP023284.1 Bac0016651 Vibrio anguillarum strain VIB12 "Vibrio anguillarum strain VIB12 is a Gram-negative, curved-shaped bacterium characterized by its nonsporulating nature and single-cell arrangement. This strain is a heterotroph, utilizing organic compounds as its energy source, and exhibits facultative anaerobic respiration, allowing it to thrive in both oxygen-rich and oxygen-poor environments. ↵↵Vibrio anguillarum is primarily associated with host environments, suggesting that it may engage in symbiotic or pathogenic interactions within its ecological niches. While the specific host organisms and the nature of these interactions for strain VIB12 are not delineated, its habitat indicates a potential role in the microbiota of aquatic organisms. The facultative anaerobic capability of VIB12 may provide it with a competitive advantage in fluctuating oxygen conditions often found in aquatic ecosystems, where it can adapt to varying environmental stresses. ↵↵Understanding the metabolic versatility and ecological adaptability of Vibrio anguillarum strain VIB12 can offer insights into its role in aquatic microbiomes and its potential interactions with host organisms, thereby contributing to a broader understanding of microbial dynamics in aquatic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 NZ_CP023312.1 Bac0016652 Lactococcus raffinolactis strain WiKim0068 "Lactococcus raffinolactis strain WiKim0068 is a Gram-positive coccus that demonstrates facultative anaerobic respiration. This strain is primarily associated with various fermented environments, including fermented cabbage, kimchi, vegetables, fish, meat, and dairy products. Its presence in such diverse habitats suggests a versatile metabolic capability that allows it to thrive in both aerobic and anaerobic conditions, which is characteristic of many lactic acid bacteria used in food fermentation.↵↵The coccoid morphology of Lactococcus raffinolactis strain WiKim0068 contributes to its functional role in fermentation processes, where it may play a significant part in the development of flavor and preservation of fermented foods. Given its habitat range, this strain may be instrumental in enhancing the safety and sensory qualities of these products through lactic acid production and other metabolic byproducts.↵↵The ecological role of Lactococcus raffinolactis strain WiKim0068 in fermented foods is particularly noteworthy, as it may interact with other microbial populations to establish complex fermentation communities. This interaction could influence not only the organoleptic properties of the fermented items but also their nutritional profiles, thereby contributing to the health benefits often attributed to fermented foods. Further investigation into this strain's specific contributions to fermentation dynamics and food preservation would provide valuable insights into its applications in food biotechnology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus raffinolactis Positive Cocci Facultative anaerobe fermented cabbage; fermented foods; fermented seeds; fish; kimchi; meat; milk; vegetables 1366 NZ_CP023393.1 Bac0016653 Elizabethkingia anophelis R26 "Elizabethkingia anophelis R26 is a nonsporulating, Gram-negative rod-shaped bacterium exhibiting an aerobic metabolism as a chemoheterotroph. This microbe has been identified in various habitats, indicating its broad ecological adaptability. The ability to utilize organic compounds for energy and growth suggests a versatile role in nutrient cycling within its environments. ↵↵As a member of the genus Elizabethkingia, E. anophelis R26 contributes to the microbial diversity found in its habitats, which may include soil, water, and associated environments. Its aerobic nature implies a reliance on oxygen for metabolic processes, distinguishing it from anaerobes that thrive in oxygen-depleted conditions. This characteristic may also influence its interactions with other microbial communities, particularly in environments where oxygen levels fluctuate.↵↵The presence of E. anophelis R26 in multiple habitats highlights its potential ecological significance, including its role in decomposition processes and nutrient availability. Further studies could elucidate its interactions within microbial consortia and its contributions to ecosystem functions, particularly in environments where organic matter is abundant. Understanding the ecological niches occupied by E. anophelis R26 may provide insights into its adaptations and survival strategies in diverse environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia anophelis Negative Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1246994 NZ_CP023401.1 Bac0016654 Luteimonas chenhongjianii strain 100111 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas chenhongjianii 2006110 NZ_CP023406.1 Bac0016655 Pseudomonas frederiksbergensis strain KNU-15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas frederiksbergensis 104087 NZ_CP023466.1 Bac0016656 Brevibacillus brevis X23 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus brevis 1200792 NZ_CP023474.1 Bac0016657 Burkholderia thailandensis strain FDAARGOS_426 "Burkholderia thailandensis strain FDAARGOS_426 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and demonstrates aerobic metabolism. This strain is optimally active at a temperature of 25.0 °C, suggesting a preference for moderate environmental conditions commonly found in soil and similar habitats. ↵↵As a member of the genus Burkholderia, this strain is part of a diverse group of bacteria that exhibit versatile metabolic capabilities, which may contribute to its adaptability in various terrestrial ecosystems. The aerobic nature of B. thailandensis strain FDAARGOS_426 indicates that it requires oxygen for growth and survival, a trait that aligns with its habitat preferences. ↵↵Understanding the physiology and ecological role of B. thailandensis strain FDAARGOS_426 can provide insights into nutrient cycling and microbial interactions within soil communities. Its presence in terrestrial ecosystems highlights the importance of aerobic bacteria in maintaining soil health and fertility, as they often play crucial roles in the decomposition of organic matter and the cycling of nutrients. Further investigations into this strain's metabolic pathways and ecological interactions may reveal its potential contributions to soil microbiomes and the overall functioning of terrestrial ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia thailandensis Negative Rod Yes 1 2 Aerobe 25 Mesophilic Terrestrial Free living 57975 NZ_CP023498.1 Bac0016658 Rothia mucilaginosa strain FDAARGOS_369 "Rothia mucilaginosa strain FDAARGOS_369 is a Gram-positive, nonsporulating coccus that thrives in microaerophilic environments, typically associated with host organisms. This strain is part of the Rothia genus, which is known for its presence in human microbiota, particularly in the oral cavity and respiratory tract. Rothia mucilaginosa is characterized by its coccoid shape, which contributes to its survival and adaptability in various host-associated habitats.↵↵As a microaerophile, Rothia mucilaginosa strain FDAARGOS_369 requires reduced oxygen levels for optimal growth, indicating a specialized metabolic capacity that allows it to thrive in environments where oxygen is limited. This trait suggests a potential role in maintaining the balance of microbial communities within host organisms, where oxygen availability can vary significantly.↵↵The presence of Rothia mucilaginosa in host-associated environments underscores its significance in microbial ecology, potentially influencing host health through its interactions with other microbial species. Understanding the specific conditions under which this strain flourishes may provide insights into its functional roles within microbiomes, particularly regarding its contributions to metabolic processes and host interactions in microenvironments. The reliance on microaerophilic conditions also highlights the necessity for further exploration of its ecological niche and interactions within the complex microbiota of various hosts." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa Positive Cocci Yes 1 1 Microaerophile Mesophilic HostAssociated Free living Nonsporulating 43675 NZ_CP023509.1 Bac0016659 Enterococcus sp. FDAARGOS_375 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. FDAARGOS_375 2060307 NZ_CP023513.1 Bac0016660 Cedecea neteri strain FDAARGOS_392 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea neteri 158822 NZ_CP023525.1 Bac0016661 Ralstonia pickettii strain FDAARGOS_410 "Ralstonia pickettii strain FDAARGOS_410 is a Gram-negative, rod-shaped bacterium that functions as a heterotroph, deriving its energy from organic compounds. This strain exhibits aerobic respiration, requiring oxygen for its metabolic processes. R. pickettii is known to inhabit diverse environments, indicating its adaptability and potential role in various ecological niches. ↵↵The heterotrophic nature of R. pickettii suggests that it plays a significant role in the decomposition of organic matter, contributing to nutrient cycling within its habitats. Its ability to thrive in multiple environments points to a versatile metabolic capacity, allowing it to exploit a range of organic substrates. This adaptability may also reflect its potential for survival in fluctuating conditions, which could be an asset in bioremediation applications or in natural ecosystems where resource availability can vary.↵↵In summary, Ralstonia pickettii strain FDAARGOS_410 exemplifies a microbial species with ecological flexibility, capable of thriving in diverse environments while participating in essential ecological processes through its heterotrophic metabolism." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii Negative Rod Yes 1 2 Aerobe Heterotroph - Heterotroph Mesophilic Multiple Free living 329 NZ_CP023538.1 Bac0016662 Brachybacterium ginsengisoli strain DCY80 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium ginsengisoli 1331682 NZ_CP023564.1 Bac0016663 Ectopseudomonas mendocina strain MAE1-K "Ectopseudomonas mendocina strain MAE1-K is a Gram-negative, rod-shaped bacterium that exists as single cells and operates as a heterotrophic organism. This strain is obligately aerobic, indicating its requirement for oxygen to support its metabolic processes. Ectopseudomonas mendocina is known to inhabit multiple environments, although specific details regarding these habitats are not provided. ↵↵As a heterotroph, E. mendocina strain MAE1-K likely plays a role in the cycling of organic materials within its ecosystems, utilizing organic compounds as its energy source. Its aerobic nature suggests that it could be involved in processes that require oxygen, such as the degradation of organic pollutants or the breakdown of complex organic matter in various ecological contexts. ↵↵The unique combination of traits exhibited by Ectopseudomonas mendocina strain MAE1-K highlights its potential adaptability and functional significance in diverse habitats. Its ability to thrive in multiple environments while relying on organic substrates for energy may suggest a role in biogeochemical cycles, particularly in environments where organic matter is abundant. This adaptability could also make it a candidate for future studies aimed at understanding microbial dynamics in various ecological settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas mendocina Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 300 NZ_CP023641.1 Bac0016664 Halomonas hydrothermalis strain Y2 "Halomonas hydrothermalis strain Y2 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobe/anaerobe metabolism and optimal growth at 29.0°C. This strain does not form spores, suggesting a reliance on vegetative growth for survival and reproduction. The ability to thrive in both aerobic and anaerobic conditions indicates a versatile metabolic capacity, allowing Halomonas hydrothermalis strain Y2 to adapt to fluctuating environmental oxygen levels.↵↵The physiological traits of Halomonas hydrothermalis strain Y2 suggest it may inhabit diverse ecological niches, particularly in environments where temperature and oxygen availability vary, such as hydrothermal vents or saline habitats. Its adaptability to both oxygen-rich and depleted environments could provide insights into microbial survival strategies in extreme conditions. Furthermore, the absence of sporulation may reflect a specialization in nutrient-rich surroundings where rapid growth is advantageous. Overall, the study of Halomonas hydrothermalis strain Y2 contributes to our understanding of microbial resilience and metabolic diversity in dynamic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella venusta Gram-negative rod facultative aerobe/anaerobe 29 mesophilic non-spore-forming 44935 NZ_CP023656.1 Bac0016665 Mesoplasma lactucae ATCC 49193 strain 831-C4 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma lactucae 81460 NZ_CP023668.1 Bac0016666 Methylomonas koyamae strain LM6 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas koyamae 702114 NZ_CP023670.1 Bac0016667 Clostridium septicum strain DSM 7534 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium septicum anaerobic 1504 NZ_CP023671.1 Bac0016668 Rhodococcus ruber strain YC-YT1 "Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain, belonging to the genus Rhodococcus, is characterized by its ability to metabolize a variety of organic compounds, which may contribute to its role in soil biogeochemical cycles. The Gram-positive nature of R. ruber strain YC-YT1 suggests a thick peptidoglycan layer in its cell wall, which may confer certain advantages in harsh soil conditions, such as increased resistance to desiccation.↵↵R. ruber strains, including YC-YT1, are often studied for their potential applications in bioremediation due to their metabolic versatility. This metabolic capability allows them to utilize different carbon sources, which can be crucial for survival in diverse soil habitats. Additionally, their presence in soil ecosystems indicates a potential role in nutrient cycling, as they may participate in the degradation of organic matter.↵↵The ecological significance of R. ruber strain YC-YT1 may extend to its interactions with other soil microorganisms, contributing to community dynamics and overall soil health. These interactions can influence nutrient availability and microbial diversity, impacting broader ecological processes. The adaptability of R. ruber strain YC-YT1 highlights the importance of soil-dwelling microorganisms in maintaining the balance of terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus ruber positive Soil 1830 NZ_CP023714.1 Bac0016669 Methylosinus trichosporium OB3b Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylosinus Methylosinus trichosporium 595536 NZ_CP023737.1 Bac0016670 Chitinophaga caeni strain 13 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga caeni 2029983 NZ_CP023777.1 Bac0016671 Nocardia terpenica strain NC_YFY_NT001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia terpenica 455432 NZ_CP023779.1 Bac0016672 Faecalibacterium prausnitzii strain Indica "Faecalibacterium prausnitzii strain Indica is a Gram-positive, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C and exhibits anaerobic metabolic characteristics as a chemoheterotroph. This strain, like other members of its species, is capable of utilizing a range of organic substrates for energy, which underscores its adaptability to various environments. ↵↵F. prausnitzii is predominantly found in the human gastrointestinal tract, where it plays a significant role in maintaining gut health through its metabolic activities. It has been associated with the production of short-chain fatty acids, which are beneficial to the host and contribute to gut homeostasis. The ability of F. prausnitzii strain Indica to inhabit multiple habitats suggests a versatile ecological niche, potentially allowing it to interact with diverse microbial communities.↵↵Given its strict anaerobic nature, F. prausnitzii strain Indica is likely to be sensitive to oxygen exposure, which may limit its survival in oxygen-rich environments outside the gastrointestinal tract. This specificity highlights its potential importance in the gut microbiota, where it may influence the overall microbial balance and contribute to the host's immune response. The unique properties of this strain underscore the complexity of microbial interactions within the gut ecosystem and the significance of anaerobic bacteria in health and disease." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NZ_CP023819.1 Bac0016673 Escherichia coli strain 7/2 "Escherichia coli strain 7/2 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a common trait among many E. coli strains. It has an optimal growth temperature of 37.0°C, aligning with the typical human body temperature, suggesting a potential association with host organisms.↵↵As a host-associated microbe, E. coli strain 7/2 likely occupies niches within the gastrointestinal tracts of various hosts, where it may play a role in nutrient metabolism and microbial community dynamics. The capacity to grow under varying oxygen conditions may enhance its adaptability, allowing it to survive in diverse microenvironments within the host. This adaptability could contribute to its resilience in fluctuating conditions, such as those encountered during shifts in the host's diet or gut microbiome composition.↵↵Understanding the specific traits of E. coli strain 7/2 can provide insight into its functional roles within host-associated ecosystems, particularly in relation to its interactions with other microbial species and its contributions to the overall health of the host. Further research into its metabolic capabilities and ecological interactions could elucidate its significance in microbial ecology and potential applications in biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP023820.1 Bac0016674 Escherichia coli strain 4/4 "Escherichia coli strain 4/4 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, a condition that aligns with its association with host environments, suggesting an adaptation to the warm-blooded organisms it may inhabit. As a facultative anaerobe, E. coli strain 4/4 possesses the metabolic versatility to grow in both aerobic and anaerobic conditions, allowing it to exploit a variety of niches within its host.↵↵The host-associated habitat of E. coli strain 4/4 indicates that it is likely to be found in the gastrointestinal tract of mammals, where it plays significant roles in nutrient processing and maintaining gut homeostasis. The ability to survive in different oxygen conditions enhances its ecological adaptability, facilitating colonization in diverse microenvironments within the host.↵↵Overall, the traits of E. coli strain 4/4 underscore its potential as a model organism for studying host-microbe interactions, particularly in understanding how this strain might contribute to or influence the microbial balance within the gastrointestinal system. Further research could elucidate its specific roles and interactions in the host environment, providing insights into microbial ecology and the dynamics of gut health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP023827.1 Bac0016675 Prevotella jejuni strain CD3:33 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella jejuni 1177574 NZ_CP023863.1 Bac0016676 Serratia fonticola strain FDAARGOS_411 "Serratia fonticola strain FDAARGOS_411 is a nonsporulating, Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe and a chemoheterotroph. This strain is capable of utilizing a variety of organic compounds as energy sources, allowing it to thrive in diverse habitats. Its facultative anaerobic nature suggests that it can adapt to fluctuating oxygen levels, enabling it to survive in both aerobic and anaerobic environments. ↵↵The versatility of S. fonticola strain FDAARGOS_411 in utilizing multiple energy sources may contribute to its ability to inhabit various ecological niches, potentially including soil, water, and plant-associated environments. This adaptability underscores the role of S. fonticola in microbial communities, where it may participate in nutrient cycling and organic matter degradation. ↵↵The ecological implications of S. fonticola's metabolic capabilities highlight its potential significance in biogeochemical processes within its habitats. Further investigation into its specific interactions within these environments could provide insights into its ecological roles and contributions to microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia fonticola Negative Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 47917 NZ_CP023956.1 Bac0016677 Proteus vulgaris strain FDAARGOS_366 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus vulgaris digestive tract; handsets of telephone booths; meat; milk 585 NZ_CP023965.1 Bac0016678 Pseudomonas sp. FDAARGOS_380 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FDAARGOS_380 2018067 NZ_CP023969.1 Bac0016679 Helicobacter pylori strain 7.13_D1b "Helicobacter pylori strain 7.13_D1b is a Gram-negative, microaerophilic bacterium characterized by its distinct spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to a warm-blooded host environment. As a member of the Helicobacter genus, strain 7.13_D1b is typically found associated with the gastric mucosa of hosts, where it may play a role in complex host-microbe interactions.↵↵The microaerophilic nature of H. pylori strain 7.13_D1b suggests that it requires reduced levels of oxygen for growth, which aligns with its ecological niche in the gastric environment, where oxygen levels are lower than in the atmosphere. The spiral morphology of this bacterium may facilitate its motility within the viscous gastric mucus, potentially enabling it to colonize and persist in this unique habitat.↵↵Further investigation of H. pylori strain 7.13_D1b could provide insights into its metabolic capabilities and interactions within the host, particularly how it adapts to the fluctuating conditions of the gastric environment. Understanding the physiological traits of this strain may also contribute valuable information regarding the ecological dynamics of Helicobacter species in host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP024016.1 Bac0016680 Natrarchaeobaculum sulfurireducens strain AArc1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum sulfurireducens 2044521 NZ_CP024045.1 Bac0016681 Pseudomonas putida strain E41 "Pseudomonas putida strain E41 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is categorized as a facultative heterotroph. This strain thrives in diverse environments, particularly in soil and wastewater habitats, where it plays a crucial role in the degradation of organic compounds. As a nonsporulating organism, Pseudomonas putida strain E41 relies on its metabolic versatility to adapt to varying oxygen levels, enabling it to utilize different substrates for energy and growth.↵↵The facultative anaerobic nature of this strain allows it to flourish in both aerobic and anaerobic conditions, contributing to its potential applications in bioremediation and wastewater treatment processes. Given its ability to metabolize a range of organic pollutants, Pseudomonas putida strain E41 exemplifies the adaptability of microorganisms in response to anthropogenic environmental changes.↵↵Moreover, the metabolic capabilities of Pseudomonas putida strains, including E41, suggest that they may play a significant role in nutrient cycling within their habitats, thus influencing soil health and ecosystem dynamics. This highlights the importance of studying such strains not only for their biotechnological potential but also for their ecological impact in natural and engineered environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP024085.1 Bac0016682 Pseudomonas putida strain E46 "Pseudomonas putida strain E46 is a Gram-negative, rod-shaped bacterium that exists primarily in soil and wastewater environments. This strain is characterized by its arrangement of individual cells, as it typically appears as single entities rather than in clusters or chains. Pseudomonas putida E46 is a nonsporulating organism, indicating that it does not form spores as a means of survival under unfavorable conditions. As a heterotroph, this strain relies on organic compounds as its energy source, which it metabolizes through various biochemical pathways. Additionally, Pseudomonas putida E46 demonstrates facultative anaerobic capabilities, allowing it to thrive in both aerobic and anaerobic conditions.↵↵The ecological significance of Pseudomonas putida strain E46 may be underscored by its potential role in the bioremediation of contaminated environments, particularly in wastewater treatment processes. Its adaptability to diverse oxygen levels and its capacity to utilize a wide range of organic substrates position it as a valuable candidate for applications in environmental microbiology and biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP024086.1 Bac0016683 Treponema pallidum subsp. pertenue strain Kampung Dalan K363 "Treponema pallidum subsp. pertenue strain Kampung Dalan K363 is a Gram-negative spirochete characterized by its spiral shape and solitary cell arrangement. This strain is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. Treponema pallidum subsp. pertenue, as a subspecies, is known to be host-associated, suggesting a close relationship with specific hosts during its lifecycle.↵↵The organism's structure as a spirilla enables it to navigate through viscous environments, which is advantageous for its survival in host tissues. The Gram-negative nature of this strain reflects characteristics of its cell wall composition, which is typically thinner than that of Gram-positive bacteria and possesses an outer membrane containing lipopolysaccharides. Such features play a critical role in its interaction with the host's immune system, possibly influencing its pathogenic potential.↵↵While the specific pathogenicity of the Kampung Dalan K363 strain is not detailed, its classification within the Treponema genus implies a potential association with diseases that affect the host. The anaerobic requirement suggests that it may inhabit anaerobic niches within the host, such as deep tissue or mucosal surfaces, where oxygen levels are low. ↵↵This ecological adaptation highlights the specialized role of Treponema pallidum subsp. pertenue strain Kampung Dalan K363 in its niche, emphasizing the importance of anaerobic conditions for its survival and the intricate relationships it may maintain with its host." Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema pallidum Negative Spirilla No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 168 NZ_CP024088.1 Bac0016684 Pedobacter ginsengisoli strain T01R-27 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter ginsengisoli 363852 NZ_CP024091.1 Bac0016685 Bacillus cytotoxicus strain CH_3 "Bacillus cytotoxicus strain CH_3 is a Gram-positive, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolism. As a member of the Bacillus genus, this strain is characterized by its ability to form endospores, a trait common among many Bacillus species that allows survival in harsh conditions. The aerobic nature of Bacillus cytotoxicus strain CH_3 suggests that it requires oxygen for growth and energy production, which may influence its ecological niche within soil habitats where oxygen availability is sufficient.↵↵The terrestrial habitat of B. cytotoxicus strain CH_3 indicates its potential role in soil microbiomes, where it may contribute to nutrient cycling and organic matter decomposition. Given its aerobic metabolism, this strain could be involved in the breakdown of organic pollutants or the enhancement of soil fertility through biogeochemical processes. Future studies could further explore the physiological capabilities of this strain and its interactions with other microorganisms in the soil ecosystem, providing insights into its ecological significance and potential applications in bioremediation or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cytotoxicus Positive Rod Yes Aerobe Mesophilic Terrestrial 580165 NZ_CP024113.1 Bac0016686 Escherichia coli strain 14EC029 "Escherichia coli strain 14EC029 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that corresponds with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli strain 14EC029 is capable of growth in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels within its host. ↵↵The ability of this strain to inhabit host-associated environments suggests a potential role in the complex microbial communities found within the gastrointestinal tract of mammals. This adaptability may also contribute to its survival and proliferation in diverse ecological niches, where it can exploit available nutrients. Understanding the growth characteristics and environmental flexibility of E. coli strain 14EC029 can provide insights into its interactions with host organisms and its potential contributions to the microbiome's functional dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP024145.1 Bac0016687 Escherichia coli strain 14EC033 "Escherichia coli strain 14EC033 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which coincides with the average body temperature of many mammalian hosts, indicating its adaptation to host-associated environments. As a facultative anaerobe, E. coli strain 14EC033 can utilize both aerobic and anaerobic metabolic pathways, allowing it to survive in diverse oxygen conditions within its habitat. ↵↵The ability of this strain to thrive in host-associated environments suggests a potential role in the microbial communities of the gastrointestinal tract, where it may participate in symbiotic relationships or contribute to nutrient cycling. E. coli strains are known for their metabolic versatility, which could provide insights into their ecological roles, including their involvement in the digestion of complex carbohydrates and maintenance of gut health. Understanding the traits of E. coli strain 14EC033 may enhance our knowledge of its functional contributions to microbial ecosystems in host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP024148.1 Bac0016688 Moraxella osloensis strain KSH Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_CP024180.2 Bac0016689 Moraxella osloensis strain TT16 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_CP024185.2 Bac0016690 Sinorhizobium fredii strain NXT3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium fredii 380 NZ_CP024308.1 Bac0016691 Borrelia miyamotoi strain Izh-16 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia miyamotoi 47466 NZ_CP024351.2 Bac0016692 Mesoplasma entomophilum strain TAC Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma entomophilum 2149 NZ_CP024411.1 Bac0016693 Paracoccus yeei strain TT13 "Paracoccus yeei strain TT13 is a Gram-negative, nonsporulating coccus that exhibits chemoheterotrophic metabolism and thrives in aerobic conditions. This strain has been isolated from soil habitats, suggesting its potential role in terrestrial ecosystems, where it may participate in nutrient cycling and organic matter decomposition. ↵↵As a chemoheterotroph, P. yeei strain TT13 relies on organic compounds as both carbon and energy sources, which positions it among microorganisms that contribute to soil health and fertility through the breakdown of complex organic materials. The coccoid shape of this strain may confer certain advantages in its soil environment, potentially affecting its motility and interaction with other microbial communities.↵↵Understanding the traits of Paracoccus yeei strain TT13 can provide insights into its ecological functions within soil ecosystems, including its interactions with other soil-dwelling microbes and its contributions to the biogeochemical processes that sustain soil health. Furthermore, the presence of such organisms in soil highlights the diversity of microbial life and the complex interdependencies that characterize soil microbial communities." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus yeei Negative Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 147645 NZ_CP024422.1 Bac0016694 Moraxella osloensis strain NP7 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_CP024443.1 Bac0016695 Chlamydia psittaci strain GIMC 2003:Cps25SM Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci 83554 NZ_CP024453.1 Bac0016696 Komagataeibacter xylinus strain xylinus Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter xylinus 28448 NZ_CP024644.1 Bac0016697 Bacillus cereus strain MLY1 "Bacillus cereus strain MLY1 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits aerobic metabolism. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. Bacillus cereus species, including strain MLY1, are known for their versatile habitats, which can include a variety of environments ranging from soil to decaying organic matter, suggesting an ecological flexibility that allows them to adapt to diverse ecological niches.↵↵The aerobic nature of Bacillus cereus strain MLY1 implies that it relies on oxygen for growth and energy production, positioning it within environments where oxygen availability is sufficient. This trait not only highlights its metabolic capabilities but also suggests potential roles in nutrient cycling and organic matter decomposition. The ability to form chains may facilitate interactions with other microbial communities, potentially enhancing its ecological roles in various habitats.↵↵Overall, Bacillus cereus strain MLY1 exemplifies the adaptability and ecological significance of its species, particularly in aerobic environments where it may contribute to the breakdown of organic materials and influence microbial community dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP024657.1 Bac0016698 Citrobacter freundii strain UMH14 "Citrobacter freundii strain UMH14 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain is nonsporulating, which indicates it does not form spores as a means of survival under unfavorable conditions. Citrobacter freundii is commonly found in diverse environments, including hospital sewage, the intestinal tract of various organisms, general sewage, soil, and surface waters.↵↵As a member of the Enterobacteriaceae family, C. freundii plays a role in the microbiota of both humans and animals, contributing to the complex interactions within these ecosystems. Its presence in hospital sewage suggests a potential link to clinical environments, where it may be part of the microbial community associated with wastewater. The ability of C. freundii to thrive in both aerobic and anaerobic conditions enables it to exploit a variety of ecological niches, potentially influencing nutrient cycling and microbial diversity in its habitats.↵↵The strain's versatility in occupying different environments, from soil to sewage systems, highlights its adaptability and may reflect broader ecological roles that include the degradation of organic matter and participation in biogeochemical cycles. Further research into C. freundii strain UMH14 could provide insights into its specific interactions within these habitats and its contributions to microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NZ_CP024682.1 Bac0016699 Prevotella intermedia strain KCOM 2033 "Prevotella intermedia strain KCOM 2033 is a Gram-negative, rod-shaped anaerobic bacterium primarily found in various human and animal habitats, including the gingival sulci, oral cavity, gut, rumen, subgingival and supragingival dental biofilms, subgingival plaque, and the urogenital tract. This organism thrives in environments that are low in oxygen, reflecting its obligate anaerobic nature. ↵↵The presence of P. intermedia in dental biofilms suggests its potential role in oral health and disease, as it may contribute to the complex microbial communities associated with periodontal conditions. Its habitat in the gut and rumen indicates that this strain may also play a role in digestive processes, possibly influencing nutrient absorption and fermentation in these environments. ↵↵Given the diverse habitats of P. intermedia strain KCOM 2033, it may contribute to both symbiotic and dysbiotic relationships within microbial communities, highlighting its ecological versatility. The strain’s adaptation to anaerobic niches reinforces the importance of understanding microbial interactions in various ecosystems, particularly in human health and the maintenance of oral and gut microbiomes. Further research may reveal additional insights into its specific functions and interactions within these complex microbial environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_CP024696.1 Bac0016700 Prevotella intermedia strain KCOM 2837 "Prevotella intermedia strain KCOM 2837 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments. This microbe is predominantly found in various habitats associated with human and animal health, including the gingival sulci, oral cavity, gut, rumen, and urogenital tract. Notably, it is a significant component of both subgingival and supragingival dental biofilms and is often associated with subgingival plaque formation.↵↵The anaerobic nature of Prevotella intermedia suggests that it plays a crucial role in maintaining the ecological balance within these diverse environments by participating in the fermentation of carbohydrates and the degradation of organic matter. Its presence in the oral cavity and dental biofilms indicates a potential involvement in oral health and disease dynamics, particularly in relation to periodontal conditions. ↵↵Furthermore, the ability of Prevotella intermedia to inhabit multiple niches, including the gut and urogenital tract, highlights its potential adaptability and functional versatility in various biological contexts. This adaptability may offer insights into its interactions with the host microbiome and its role in the complex microbial communities that contribute to health and disease states across different anatomical sites. Understanding the ecological significance of Prevotella intermedia could provide valuable information for further studies on microbial interactions and their implications for host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_CP024723.1 Bac0016701 Prevotella intermedia strain KCOM 1933 "Prevotella intermedia strain KCOM 1933 is a Gram-negative, rod-shaped anaerobic bacterium predominantly found in various human and animal habitats, including the gingival sulci, gut, oral cavity, rumen, and urogenital tract. This microbe is notably present in both subgingival and supragingival dental biofilms as well as subgingival plaque, indicating its significant role in oral microbial communities.↵↵As an anaerobe, Prevotella intermedia strain KCOM 1933 thrives in environments devoid of oxygen, which aligns with its ecological niches, particularly in the oral cavity where oxygen levels are low. Its presence in dental biofilms suggests a potential involvement in maintaining the complex microbial ecosystems that reside within the oral environment.↵↵The diverse habitats of Prevotella intermedia indicate its adaptability to various anaerobic conditions and suggest its potential interactions with other microbial species in these environments. This adaptability may contribute to its ecological role in both health and disease, particularly in the context of oral health where it may influence the balance of the microbial community. Understanding the specific interactions and functions of Prevotella intermedia strain KCOM 1933 within these habitats could provide further insights into microbial ecology and its implications for host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 NZ_CP024729.1 Bac0016702 Vreelandella alkaliphila strain X3 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella alkaliphila 272774 NZ_CP024811.1 Bac0016703 Halohasta litchfieldiae strain tADL Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halohasta Halohasta litchfieldiae 1073996 NZ_CP024845.1 Bac0016704 Rhodococcus ruber strain YYL "Rhodococcus ruber strain YYL is a Gram-positive bacterium primarily found in soil environments. This strain exhibits distinct characteristics that align with the broader traits of the Rhodococcus genus, known for its metabolic versatility and ability to degrade a variety of organic compounds. ↵↵As a member of the Actinobacteria phylum, R. ruber strain YYL possesses a robust cell wall structure, typical of Gram-positive organisms, which contributes to its resilience in diverse soil conditions. The ecological role of this strain is likely significant, as soil-dwelling bacteria such as R. ruber are essential for nutrient cycling and organic matter decomposition. This particular strain may participate in the breakdown of complex organic materials, thereby facilitating soil health and fertility.↵↵Moreover, the adaptability of R. ruber strain YYL to various environmental stressors suggests potential applications in bioremediation, particularly in the degradation of pollutants. The metabolic pathways utilized by this strain could be further explored to understand its capabilities in transforming environmental contaminants into less harmful substances. Overall, R. ruber strain YYL exemplifies the ecological importance of soil bacteria in maintaining ecosystem stability and their potential utility in environmental biotechnology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus ruber positive Soil 1830 NZ_CP024890.1 Bac0016705 Cobetia sp. ICG0124 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Cobetia Cobetia sp. ICG0124 2053669 NZ_CP024893.1 Bac0016706 Roseinatronobacter bogoriensis subsp. barguzinensis strain alga05 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Roseinatronobacter Roseinatronobacter bogoriensis 441209 NZ_CP024899.1 Bac0016707 Burkholderia pyrrocinia strain mHSR5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pyrrocinia 60550 NZ_CP024902.1 Bac0016708 Paraburkholderia caledonica strain PHRS4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caledonica 134536 NZ_CP024905.1 Bac0016709 Sphingomonas psychrotolerans strain Cra20 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas psychrotolerans 1327635 NZ_CP024924.1 Bac0016710 Burkholderia lata strain A05 "Burkholderia lata strain A05 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic metabolism, allowing it to thrive in both oxygen-rich and low-oxygen environments. This strain does not form spores, which may influence its survival strategies in various habitats. The ability to exist in multiple environments suggests that Burkholderia lata strain A05 has a versatile ecological role, potentially contributing to nutrient cycling in diverse ecosystems.↵↵The facultative aerobic nature of this strain indicates its adaptability to fluctuating oxygen levels, making it well-suited to environments such as soil, water, and decaying organic matter. This adaptability may also facilitate its interactions with other microbial communities, potentially influencing community dynamics and ecological balance. Understanding these traits can provide insights into the ecological functions of Burkholderia lata strain A05 and its potential applications in bioremediation or agriculture. Overall, the versatile metabolic capabilities of this strain highlight its importance in microbial ecology and its potential utility in environmental management strategies." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia lata Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 482957 NZ_CP024944.1 Bac0016711 Entomoplasma freundtii strain BARC 318 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Entomoplasma Entomoplasma freundtii 74700 NZ_CP024962.1 Bac0016712 Williamsoniiplasma luminosum strain PIMN-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Williamsoniiplasma Williamsoniiplasma luminosum 214888 NZ_CP024963.1 Bac0016713 Mesoplasma tabanidae strain BARC 857 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma tabanidae 219745 NZ_CP024969.1 Bac0016714 Escherichia coli strain CV839-15 "Escherichia coli strain CV839-15 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli is recognized for its facultative anaerobic metabolism, allowing it to grow in both the presence and absence of oxygen, a trait that enhances its survival and versatility in diverse environments within a host organism.↵↵Given its characteristics, E. coli strain CV839-15 may play a role in the complex microbial communities found in the gastrointestinal tracts of mammals. The strain's ability to thrive at physiological temperatures suggests a close relationship with its host, where it may participate in various biological processes, including digestion and nutrient absorption. Furthermore, its facultative anaerobic nature allows it to exploit different niches within the intestinal microenvironment, potentially contributing to its resilience and adaptability in fluctuating oxygen levels. This adaptability may also provide insights into the microbial dynamics and interactions that underpin gut health and dysbiosis in host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP024975.1 Bac0016715 Dickeya fangzhongdai strain DSM 101947 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya fangzhongdai 1778540 NZ_CP025003.1 Bac0016716 Rhizobium leguminosarum strain Norway "Rhizobium leguminosarum strain Norway is a Gram-negative, rod-shaped bacterium characterized by its occurrence as single cells and its nonsporulating nature. This microbe is classified as a chemoheterotroph, deriving its energy from organic compounds, which aligns with its typical habitat in soil environments. As an aerobic organism, R. leguminosarum strain Norway requires oxygen for its metabolic processes, which is essential for its survival and growth in the soil ecosystem.↵↵This strain is particularly notable for its role in symbiotic nitrogen fixation, a process that enhances soil fertility and supports plant growth, particularly in leguminous crops. The ability to form nodules on the roots of certain plants allows this bacterium to convert atmospheric nitrogen into a form that is accessible to plants, thus contributing to nutrient cycling within its habitat.↵↵The ecological significance of R. leguminosarum strain Norway extends beyond its direct interactions with plants; it plays a vital role in promoting biodiversity within soil microbiomes. By supporting legume growth, it indirectly influences the community structure of other soil organisms, leading to enhanced soil health and productivity. This strain exemplifies the intricate relationships that underpin soil ecosystems and the importance of microbial contributions to agricultural sustainability." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP025012.1 Bac0016717 Enterobacter sp. SGAir0187 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. SGAir0187 2836161 NZ_CP025034.2 Bac0016718 Streptococcus suis strain AH681 "Streptococcus suis strain AH681 is a Gram-positive cocci bacterium that typically forms chains, pairs, or may be observed as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for conditions similar to those found in warm-blooded hosts. As a facultative anaerobe, S. suis strain AH681 can grow in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. ↵↵The habitat of this strain is described as specialized, suggesting that it may be associated with specific ecological niches where it can exploit particular resources or conditions. The ability to form chains and pairs may facilitate its colonization and persistence in these specialized habitats, potentially influencing its interactions within microbial communities.↵↵Understanding the growth characteristics and environmental preferences of S. suis strain AH681 could provide insights into its role within its native ecosystem, particularly regarding its potential interactions with other microorganisms and its adaptation strategies in varying environments. Further research into its ecological interactions may reveal the significance of this strain in its specific habitat, as well as its potential contributions to microbial diversity and stability in that niche." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP025043.1 Bac0016719 Halalkaliarchaeum desulfuricum strain AArc-Sl Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halalkaliarchaeum Halalkaliarchaeum desulfuricum 2055893 NZ_CP025066.1 Bac0016720 [Bacillus] caldolyticus strain NEB414 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus [Bacillus] caldolyticus 1394 NZ_CP025074.1 Bac0016721 Prodigiosinella confusarubida strain ATCC 39006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Prodigiosinella Prodigiosinella confusarubida 104623 NZ_CP025084.1 Bac0016722 Streptococcus suis strain HN136 "Streptococcus suis strain HN136 is a Gram-positive cocci bacterium characterized by its arrangement in chains, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to warm-blooded hosts. As a facultative anaerobe, S. suis strain HN136 can grow in both aerobic and anaerobic environments, allowing it to exploit a range of ecological niches. ↵↵The habitat of S. suis strain HN136 is classified as specialized, suggesting that it occupies a distinct ecological role, possibly associated with specific host interactions or environmental conditions. This specialization may confer advantages in nutrient acquisition or competition within its habitat. Understanding the traits of S. suis strain HN136 can provide insights into its ecological adaptations, particularly in how it may interact with host organisms or respond to environmental pressures. Further investigations into its ecological niche could elucidate its role in microbial communities and its potential implications for animal health and disease dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP025095.1 Bac0016723 Spirosoma pollinicola strain Ha7 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma pollinicola 2057025 NZ_CP025096.1 Bac0016724 Alteromonas sp. MB-3u-76 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. MB-3u-76 2058133 NZ_CP025115.1 Bac0016725 Nonlabens sp. MB-3u-79 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens sp. MB-3u-79 2058134 NZ_CP025116.1 Bac0016726 Olleya sp. Bg11-27 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Olleya Olleya sp. Bg11-27 2058135 NZ_CP025117.1 Bac0016727 Polaribacter sp. ALD11 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. ALD11 2058137 NZ_CP025119.1 Bac0016728 Acidipropionibacterium virtanenii strain JS278 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Acidipropionibacterium Acidipropionibacterium virtanenii 2057246 NZ_CP025198.1 Bac0016729 Latilactobacillus sakei strain WiKim0073 "Latilactobacillus sakei strain WiKim0073 is a Gram-positive, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is part of a diverse group of lactic acid bacteria, which are known for their role in fermentation processes and their presence in various habitats. The ability of L. sakei strain WiKim0073 to adapt to multiple environments suggests a versatile ecological niche, potentially including fermented foods and various natural ecosystems where carbohydrate fermentation occurs.↵↵The facultative anaerobic nature of this strain indicates that it can grow in the presence or absence of oxygen, providing it with a competitive advantage in fluctuating environmental conditions. This trait may facilitate its survival in diverse habitats, from the gastrointestinal tracts of animals to food products undergoing fermentation. The adaptability of L. sakei strain WiKim0073 to different oxygen levels may also influence its metabolic pathways, enabling it to participate in a variety of biochemical processes.↵↵Understanding the specific habitat preferences and metabolic capabilities of Latilactobacillus sakei strain WiKim0073 could provide insights into its potential applications in food preservation and probiotic development. Furthermore, its presence in diverse habitats may contribute to the ecological balance within those environments, highlighting the importance of this strain in microbial community dynamics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1599 NZ_CP025203.1 Bac0016730 Enterobacter cancerogenus strain CR-Eb1 "Enterobacter cancerogenus strain CR-Eb1 is a Gram-negative bacterium primarily associated with plant habitats. As a facultative anaerobe, this strain possesses the metabolic flexibility to thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen availability in its plant-associated niches. This adaptability may contribute to its survival and function within diverse plant ecosystems.↵↵The Gram-negative classification indicates the presence of a thin peptidoglycan layer encased by an outer membrane, which is characteristic of this bacterial group. This structural feature may influence the strain's interactions with plant hosts and its ability to colonize various plant tissues. While specific roles of Enterobacter cancerogenus strain CR-Eb1 in plant health or disease are not detailed, members of the Enterobacter genus are often implicated in plant-associated processes, including nitrogen fixation and promoting plant growth.↵↵Furthermore, the facultative anaerobic nature of this strain suggests potential involvement in biogeochemical cycles within the rhizosphere, where oxygen levels can fluctuate significantly. The ability to thrive in both the presence and absence of oxygen may enable Enterobacter cancerogenus strain CR-Eb1 to play a role in nutrient cycling and plant-microbe interactions, which are crucial for ecosystem functioning. Overall, understanding the ecological role of this strain could provide insights into its contributions to plant health and soil microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cancerogenus Negative Facultative anaerobe plants 69218 NZ_CP025225.1 Bac0016731 Mesoplasma syrphidae strain YJS Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma syrphidae 225999 NZ_CP025257.1 Bac0016732 Pseudomonas sp. S09G 359 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. S09G 359 2054919 NZ_CP025263.1 Bac0016733 Burkholderia pseudomallei strain MSHR1435 "Burkholderia pseudomallei strain MSHR1435 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and is classified as an aerobic organism. This strain is part of the Burkholderia genus, which is known for its metabolic diversity and ecological versatility. Aerobic bacteria, such as B. pseudomallei MSHR1435, typically require oxygen for growth and survival, indicating that this strain may be adapted to environments where oxygen is readily available.↵↵The terrestrial habitat of B. pseudomallei MSHR1435 suggests its potential roles within soil ecosystems, including nutrient cycling and interactions with other microbial communities. The presence of this bacterium in soil may also influence local biodiversity and can be indicative of environmental conditions conducive to its growth. Understanding the ecological niches occupied by strains like MSHR1435 can provide insights into their adaptive strategies, survival mechanisms, and potential interactions with both biotic and abiotic factors in their environment. This highlights the importance of studying such microbes, as they may contribute significantly to ecosystem dynamics and may possess traits that could be leveraged for biotechnological applications." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 28450 NZ_CP025264.1 Bac0016734 Komagataeibacter xylinus strain DSM 2325 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter xylinus 28448 NZ_CP025269.1 Bac0016735 Ethanoligenens harbinense strain X-29 "Ethanoligenens harbinense strain X-29 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0 °C. This strain is non-spore-forming, indicating a reliance on its environmental conditions for survival and reproduction rather than the resilience conferred by sporulation. ↵↵Ethanoligenens harbinense strain X-29 is typically found in the caeca, the blind pouches located at the junction of the small and large intestines in certain organisms, suggesting its adaptation to a specialized niche within the gastrointestinal microbiome. The anaerobic habitat of the caeca aligns with the strain's oxygen requirements, as it is optimized for growth in low-oxygen environments. ↵↵The metabolic capabilities of E. harbinense, while not specified here, are likely adapted to the unique substrates present in the caeca, which may include fermentation of complex carbohydrates or other organic materials. This bacterium's presence in the caeca highlights its potential role in the digestion processes and overall gut health of the host organism. Understanding the functional role of Ethanoligenens harbinense strain X-29 within this niche could provide insights into the microbial interactions that contribute to nutrient absorption and the maintenance of gut homeostasis." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ethanoligenens Ethanoligenens harbinense Gram-positive rod anaerobic 37 mesophilic caeca non-spore-forming 253239 NZ_CP025288.1 Bac0016736 Brevibacterium aurantiacum strain SMQ-1417 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 NZ_CP025330.1 Bac0016737 Brevibacterium aurantiacum strain SMQ-1418 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 NZ_CP025331.1 Bac0016738 Brevibacterium aurantiacum strain SMQ-1421 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 NZ_CP025332.1 Bac0016739 Kitasatospora sp. MMS16-BH015 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. MMS16-BH015 2018025 NZ_CP025394.1 Bac0016740 Streptomyces sp. CMB-StM0423 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CMB-StM0423 2059884 NZ_CP025407.1 Bac0016741 Paracoccus tegillarcae strain BM15 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus tegillarcae 1529068 NZ_CP025408.1 Bac0016742 Paracoccus zhejiangensis strain J6 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus zhejiangensis 1077935 NZ_CP025430.1 Bac0016743 Salmonella enterica subsp. enterica serovar Agona strain "Salmonella enterica subsp. enterica serovar Agona strain is a Gram-negative, spirilla-shaped bacterium characterized by its microaerophilic nature and chains or singles cell arrangement. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the typical body temperature of its host organisms. As a chemoorganotroph, it derives energy from organic compounds, indicating a reliance on host-associated habitats for sustenance.↵↵The microaerophilic requirement suggests that Salmonella enterica serovar Agona may inhabit environments with limited oxygen availability, such as the gastrointestinal tracts of animals, where it can engage in fermentation and other metabolic processes conducive to its survival. This adaptation may provide the strain with a competitive advantage in such niches, allowing it to effectively utilize the organic matter present in host environments.↵↵Understanding the specific ecological niche of this strain enhances our knowledge of its potential interactions within host systems and its role in microbial communities. Further studies could elucidate the specific organic substrates utilized by this strain in relation to its microaerophilic lifestyle, contributing to a broader understanding of its ecological dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 NZ_CP025451.1 Bac0016744 Legionella sainthelensi strain LA01-117 "Legionella sainthelensi strain LA01-117 is a Gram-negative bacterium primarily found in freshwater environments. This strain belongs to the genus Legionella, which is known for its association with aquatic habitats, including natural and engineered water systems. The Gram-negative characteristic indicates that the bacterium has a thin peptidoglycan layer and an outer membrane, a feature that can influence its interactions with the environment and its susceptibility to certain antibiotics.↵↵Although specific pathogenicity traits for strain LA01-117 are not provided, the presence of Legionella species in freshwater suggests potential for environmental adaptation and survival in various conditions. Freshwater habitats can offer a range of ecological niches, including those enriched with organic matter, which can support the growth and proliferation of Legionella species. ↵↵Furthermore, the ability of Legionella to thrive in freshwater environments points to its potential role in the aquatic microbiome, where it may interact with other microorganisms, contributing to nutrient cycling and influencing microbial community dynamics. This ecological perspective highlights the importance of understanding the environmental behaviors of bacteria like Legionella sainthelensi strain LA01-117, as they may play significant roles in freshwater ecosystems and their health." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella sainthelensi negative Fresh water 28087 NZ_CP025491.2 Bac0016745 Clostridium perfringens strain EHE-NE18 "Clostridium perfringens strain EHE-NE18 is a Gram-positive, rod-shaped bacterium that exhibits a variety of cell arrangements, including singles, pairs, and chains. This strain thrives optimally at 37.0°C, suggesting a preference for conditions typically found within host organisms. As a chemoorganotroph, C. perfringens EHE-NE18 utilizes organic compounds as its energy source, which is consistent with its habitat being host-associated. ↵↵Notably, this strain is classified as an anaerobe, indicating that it grows in environments devoid of oxygen. This anaerobic characteristic is significant, as it allows C. perfringens EHE-NE18 to occupy specific niches within the host where oxygen levels are low or absent, such as deep tissues or in the gastrointestinal tract. The ability to form chains and pairs may facilitate its survival and colonization in these environments, potentially enhancing its competitive advantage over other microorganisms.↵↵Understanding the ecological role of C. perfringens strain EHE-NE18 within host-associated habitats may provide insights into its interactions with the host microbiome and its potential impact on host health or disease processes. Further research into this strain could elucidate its metabolic pathways and ecological functions, thereby contributing to a broader understanding of anaerobic microbial communities in host environments." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 NZ_CP025502.1 Bac0016746 Rhizobium leguminosarum bv. viciae strain UPM791 "Rhizobium leguminosarum bv. viciae strain UPM791 is a Gram-negative, rod-shaped bacterium characterized by its nonsporulating nature and solitary cell arrangement. This strain is a chemoheterotroph, deriving its energy from organic compounds, and is typically found in soil environments where it plays a significant role in nitrogen fixation, particularly in association with leguminous plants.↵↵As an aerobe, R. leguminosarum bv. viciae strain UPM791 requires oxygen for its metabolic processes, emphasizing its adaptation to well-aerated soil habitats. The ability of this strain to thrive in such environments contributes to its ecological importance, particularly in agricultural systems where it enhances soil fertility through the conversion of atmospheric nitrogen into a form accessible to plants.↵↵Moreover, the presence of R. leguminosarum bv. viciae strain UPM791 in soil ecosystems underscores its potential impact on sustainable agricultural practices. By fostering symbiotic relationships with legumes, this strain not only aids in nitrogen replenishment but also promotes biodiversity within soil communities, hinting at a complex interplay between microbial activity and plant health in maintaining soil ecosystem resilience." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 387 NZ_CP025506.1 Bac0016747 Anoxybacillus ayderensis G10 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Anoxybacillus Anoxybacillus ayderensis 1212546 NZ_CP025535.1 Bac0016748 Mycobacterium paragordonae strain 49061 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paragordonae 1389713 NZ_CP025546.1 Bac0016749 Streptomyces rimosus strain WT5260 "Streptomyces rimosus strain WT5260 is a Gram-positive bacterium primarily found in soil environments. This strain belongs to the genus Streptomyces, which is renowned for its filamentous morphology and ability to produce a wide array of bioactive compounds. The Gram-positive nature of S. rimosus WT5260 suggests a thick peptidoglycan layer in its cell wall, a characteristic that influences its interaction with environmental factors and other microorganisms.↵↵As a member of the Streptomyces genus, S. rimosus WT5260 is likely to exhibit saprophytic behavior, contributing to the decomposition of organic matter in its soil habitat. This ecological role is critical for nutrient cycling, as it aids in the breakdown of complex organic materials, thus facilitating the availability of nutrients for other soil-dwelling organisms. The production of antimicrobial substances is another hallmark of Streptomyces species, and while specific bioactive compounds have not been detailed for this strain, the potential for antibiotic production aligns with its genus characteristics.↵↵The ecological significance of S. rimosus WT5260 may also extend to its interactions with plants and soil microorganisms, potentially influencing soil health and plant growth. By participating in the soil ecosystem, this strain underscores the importance of microbial contributions to terrestrial environments, particularly in nutrient mobilization and competition with pathogenic microbes, thereby promoting a balanced soil microbiome." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rimosus Positive soil 1927 NZ_CP025552.1 Bac0016750 Escherichia coli strain E-1246 "Escherichia coli strain E-1246 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in its host-associated habitat. As a facultative anaerobe, E. coli strain E-1246 can survive in both aerobic and anaerobic environments, allowing it to adapt to various niches within its host. ↵↵Given its association with host organisms, E. coli strain E-1246 likely plays a role in the microbial community of the gastrointestinal tract, where it can contribute to the digestion of nutrients and the maintenance of gut health. The ability to exist in pairs or as singles may facilitate its interactions with other microbial species and host cells, potentially influencing its ecological dynamics within the host. The strain's facultative anaerobic nature suggests that it may be capable of thriving in diverse microenvironments, further enhancing its adaptability and ecological importance. Understanding the traits of E. coli strain E-1246 could provide insights into its functional role in host-associated microbiomes and its capacity to respond to varying environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP025575.1 Bac0016751 Paracoccus jeotgali strain CBA4604 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus jeotgali 2065379 NZ_CP025583.1 Bac0016752 Niveispirillum cyanobacteriorum strain TH16 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Niveispirillum Niveispirillum cyanobacteriorum 1612173 NZ_CP025611.1 Bac0016753 Acinetobacter schindleri strain SGAir0122 "Acinetobacter schindleri strain SGAir0122 is a Gram-negative bacterium primarily found in the rhizomes of various plant species. This strain belongs to the genus Acinetobacter, which is known for its metabolic versatility and ability to thrive in diverse environments. The Gram-negative nature of A. schindleri indicates the presence of an outer membrane, which may contribute to its resilience in ecological niches such as root systems, where it can interact with plant roots and potentially influence plant health and growth.↵↵The habitat of rhizomes suggests that A. schindleri may have a role in the rhizosphere, possibly engaging in symbiotic or mutualistic relationships with host plants. The rhizosphere is a critical area for nutrient exchange and microbial interactions, and the presence of Acinetobacter species in such environments could be indicative of their involvement in organic matter decomposition or nutrient cycling.↵↵Furthermore, the adaptability of this strain to its rhizome habitat may provide insights into its potential applications in agricultural biotechnology, particularly in enhancing plant growth or resistance to stressors through microbial associations. Understanding the ecological roles of A. schindleri strain SGAir0122 within its natural habitat could pave the way for further research into its interactions with plant systems and its contributions to soil health." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter schindleri negative rhizomes 108981 NZ_CP025619.2 Bac0016754 Sporolactobacillus terrae strain DRG1 Bacillati Bacillota Bacilli Caryophanales Sporolactobacillaceae Sporolactobacillus Sporolactobacillus terrae microaerophile 269673 NZ_CP025689.1 Bac0016755 Escherichia coli strain YDC107 "Escherichia coli strain YDC107 is a Gram-negative, rod-shaped bacterium typically occurring in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at 37.0°C, which coincides with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat.↵↵As a member of the Escherichia genus, strain YDC107 is likely to engage in various metabolic activities that can influence host physiology. Its facultative anaerobic nature indicates that it can utilize oxygen when available but can also ferment substrates in its absence, thereby supporting its survival in diverse environments within the host. This versatility may contribute to its persistence and potential interactions within the gut microbiome, where it may play roles in nutrient cycling or modulation of the host immune response.↵↵The positioning of E. coli strain YDC107 in host-associated habitats highlights the importance of understanding microbial interactions in health and disease contexts. Examining this strain's specific metabolic pathways and interactions could provide insights into its ecological roles and contributions to the overall microbial community dynamics within the host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP025707.1 Bac0016756 Enterococcus faecium strain AALTL "Enterococcus faecium strain AALTL is a Gram-positive, cocci-shaped bacterium characterized by its facultative anaerobic metabolism. This strain is notably isolated from fermented mare milk, suggesting its role in dairy fermentation processes. The ability to thrive in this anaerobic environment indicates a potential for versatile metabolic capabilities, allowing it to adapt to varying oxygen levels during fermentation.↵↵As a member of the Enterococcus genus, E. faecium is known for its resilience and ability to survive in diverse environments, which is exemplified by its presence in fermented products. The fermentation of mare milk not only highlights the strain's adaptability but also suggests a potential contribution to the development of unique flavor profiles and nutritional properties in dairy products. Understanding the ecological role of Enterococcus faecium strain AALTL in fermented mare milk could provide insights into its interactions with other microbial communities present in dairy environments, as well as its potential utility in food fermentation practices." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP025754.1 Bac0016757 Citrobacter freundii complex sp. CFNIH2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii complex sp. CFNIH2 2066049 NZ_CP025758.1 Bac0016758 Candidatus Borreliella tachyglossi strain Bc-F10-1268 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Candidatus Borrelia tachyglossi 1964448 NZ_CP025785.1 Bac0016759 Akkermansia muciniphila strain EB-AMDK-18 "Akkermansia muciniphila strain EB-AMDK-18 is a Gram-negative, coccoid bacterium that typically exists in pairs or as single cells, demonstrating its adaptation to a host-associated habitat. This strain thrives at an optimal temperature of 37.0°C, reflecting its role within warm-blooded host environments. As an anaerobic organism, it requires an oxygen-free environment for growth and metabolism, which is consistent with its presence in mucosal layers of the gastrointestinal tract.↵↵The unique morphological characteristics of Akkermansia muciniphila, specifically its cocci shape and arrangement, contribute to its ecological niche in the host's microbiome. This strain is of particular interest due to its potential contributions to gut health, as it is known to interact with host mucins, suggesting a role in maintaining mucosal integrity and influencing metabolic processes. The ability of this bacterium to thrive in anaerobic conditions within the host may also be indicative of its evolutionary adaptations to the gut environment.↵↵In summary, Akkermansia muciniphila strain EB-AMDK-18 exemplifies a specialized anaerobic organism that plays a significant role in the host-associated microbiome, potentially impacting the host's health through its interactions with mucosal layers and associated metabolic functions." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 NZ_CP025833.1 Bac0016760 Latilactobacillus sakei strain DS4 "Latilactobacillus sakei strain DS4 is a Gram-positive, rod-shaped bacterium recognized for its facultative anaerobic metabolism, allowing it to thrive in environments with varying oxygen levels. This strain is part of the diverse microbial community found in multiple habitats, although specific ecological niches have not been extensively characterized. ↵↵As a member of the Lactobacillus genus, L. sakei strain DS4 is likely involved in fermentation processes and may contribute to the preservation and flavor development in various food products, particularly in fermented meats and vegetables. Its ability to adapt to both aerobic and anaerobic conditions suggests a versatile metabolic capacity, which could play a crucial role in its survival and function within fluctuating environmental conditions.↵↵Given the organism's habitat versatility, L. sakei strain DS4 may possess unique traits that enable it to interact beneficially with other microorganisms, potentially influencing microbial dynamics in its environment. Further investigation into its metabolic pathways and interactions could provide insights into its ecological roles and applications in food science and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1599 NZ_CP025839.1 Bac0016761 Tamlana carrageenivorans strain UJ94 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Pseudotamlana Pseudotamlana carrageenivorans 2069432 NZ_CP025938.1 Bac0016762 Laceyella sacchari strain FBKL4.010 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Laceyella Laceyella sacchari 37482 NZ_CP025943.1 Bac0016763 Gemmata obscuriglobus strain DSM 5831 Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus 114 NZ_CP025958.1 Bac0016764 Stenotrophomonas sp. ZAC14D2_NAIMI4_6 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. ZAC14D2_NAIMI4_6 2072406 NZ_CP025996.1 Bac0016765 Stenotrophomonas sp. ZAC14D1_NAIMI4_6 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. ZAC14D1_NAIMI4_6 2072410 NZ_CP026000.1 Bac0016766 Stenotrophomonas sp. ESTM1D_MKCIP4_1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. ESTM1D_MKCIP4_1 2072414 NZ_CP026004.1 Bac0016767 Lysinibacillus sp. YS11 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. YS11 2072025 NZ_CP026007.1 Bac0016768 Bacillus aerophilus strain 232 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus aerophilus 293389 NZ_CP026008.1 Bac0016769 Niallia circulans strain PK3_109 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Niallia Niallia circulans 1397 NZ_CP026031.1 Bac0016770 Peribacillus asahii strain OM18 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus asahii 228899 NZ_CP026096.1 Bac0016771 Paraburkholderia terrae strain DSM 17804 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia terrae 311230 NZ_CP026112.1 Bac0016772 Latilactobacillus curvatus JCM 1096 = DSM 20019 "Latilactobacillus curvatus JCM 1096 (formerly DSM 20019) is a Gram-positive, rod-shaped bacterium classified within the genus Latilactobacillus. This species exhibits facultative anaerobic respiration, indicating its ability to grow in both the presence and absence of oxygen. The rod morphology of L. curvatus is characteristic of many lactic acid bacteria, which are known for their role in fermentation processes.↵↵L. curvatus plays a crucial role in various food fermentation applications, particularly in the production of fermented dairy products and certain meat products. Its metabolic capabilities allow it to produce lactic acid from carbohydrates, contributing to the preservation and flavor development of these foods. The capacity to thrive in diverse oxygen conditions suggests that L. curvatus may exhibit versatility in its ecological niche, potentially allowing it to inhabit various environments where oxygen levels fluctuate.↵↵Moreover, the presence of L. curvatus in fermented foods highlights its significance in food microbiology. Its contributions to the organoleptic properties of these products underscore the importance of studying such microorganisms for their potential benefits in enhancing food quality and safety. Further research into the specific metabolic pathways and interactions of L. curvatus within its environments could provide valuable insights into its applications in biotechnology and food sciences." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Facultative anaerobe 1293592 NZ_CP026116.1 Bac0016773 Halobacillus litoralis strain ERB 031 "Halobacillus litoralis strain ERB 031 is a Gram-positive, rod-shaped, spore-forming bacterium that thrives under aerobic conditions and utilizes organic compounds as an energy source, classifying it as an organotrophic chemotroph. This strain exhibits optimal growth at 37°C, making it well-suited for environments that provide moderate temperature conditions, which may reflect a preference for warm, nutrient-rich habitats.↵↵Being spore-forming, Halobacillus litoralis strain ERB 031 possesses the ability to withstand adverse environmental conditions, a trait that is advantageous for survival in fluctuating ecosystems. The capacity for sporulation may also allow this bacterium to remain viable in challenging environments where nutrients are scarce or conditions become less favorable.↵↵The ecological implications of Halobacillus litoralis strain ERB 031 may be significant, particularly in marine or saline environments, as the genus Halobacillus is often associated with high-salinity conditions. Its organotrophic metabolism suggests a role in the degradation of organic matter, potentially contributing to nutrient cycling within its ecosystem. This functional trait highlights the bacterium’s importance in maintaining ecological balance and promoting the health of its native habitat by recycling organic materials. Understanding the metabolic capabilities of Halobacillus litoralis strain ERB 031 can provide insights into its ecological roles and potential applications in bioremediation or biotechnology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus litoralis Gram-positive rod motile aerobic 37 organotroph; chemotroph mesophilic spore-forming 45668 NZ_CP026118.1 Bac0016774 Acinetobacter baumannii strain ABNIH28 "Acinetobacter baumannii strain ABNIH28 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, allowing it to thrive in diverse habitats. It requires aerobic conditions for growth, thus necessitating the presence of oxygen in its environment. The optimal growth temperature for strain ABNIH28 is 37.0°C, which aligns with the typical temperature range for many human-associated bacteria, suggesting a potential association with warm-blooded hosts or environments that mimic such conditions.↵↵The ability of A. baumannii to occupy multiple habitats highlights its ecological versatility and adaptability to varying environmental conditions. This adaptability may contribute to the strain's persistence in both terrestrial and clinical settings. Given its status as a widespread organism in various environments, understanding the specific ecological niches occupied by A. baumannii strain ABNIH28 could provide insights into its survival mechanisms and interactions with other microbial communities. Further research into its habitat preferences and metabolic capabilities may unveil important ecological roles it plays within its environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP026125.1 Bac0016775 Enterobacteriaceae bacterium ENNIH2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacteriaceae bacterium ENNIH2 1920109 NZ_CP026187.1 Bac0016776 Enterobacteriaceae bacterium ENNIH1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacteriaceae bacterium ENNIH1 2066051 NZ_CP026193.1 Bac0016777 Escherichia coli strain ECONIH5 "Escherichia coli strain ECONIH5 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, ECONIH5 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, which likely enhances its survival and proliferation within diverse niches in the host.↵↵The capacity of E. coli strains, including ECONIH5, to inhabit the intestinal microbiota of hosts is well-documented, where they play crucial roles in digestion and nutrient absorption. However, the specific ecological interactions and potential contributions of ECONIH5 to the host's microbiome dynamics are areas that warrant further exploration. Understanding its role could provide insights into microbial community structures and their influence on host health, particularly in the context of gut microbiome research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP026203.1 Bac0016778 Aeromonas sp. ASNIH4 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. ASNIH4 1636609 NZ_CP026218.1 Bac0016779 Aeromonas sp. ASNIH3 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. ASNIH3 1636608 NZ_CP026222.1 Bac0016780 Klebsiella oxytoca strain KONIH4 "Klebsiella oxytoca strain KONIH4 is a nonsporulating, Gram-negative rod that thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism as a chemoheterotroph. This strain is capable of utilizing a variety of organic compounds for energy, reflecting its versatility in different environments. Its ability to grow in both aerobic and anaerobic conditions allows K. oxytoca strain KONIH4 to inhabit diverse habitats, potentially including human-associated environments, soil, and water systems.↵↵The rod shape of K. oxytoca strain KONIH4 is characteristic of the Enterobacteriaceae family, which includes numerous other genera that share similar metabolic traits. This adaptability to varying oxygen levels may confer advantages in fluctuating environmental conditions, enabling the strain to occupy niches where oxygen availability is inconsistent. ↵↵Interestingly, the capacity of K. oxytoca strain KONIH4 to thrive in multiple habitats suggests ecological resilience, which could play a role in its interactions with other microbial communities. The strain's metabolic flexibility may facilitate its competition for resources in diverse ecological settings, potentially influencing nutrient cycling and community dynamics. Further exploration of its ecological interactions could provide insights into the functional roles of K. oxytoca in microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 NZ_CP026269.1 Bac0016781 Klebsiella oxytoca strain KONIH2 "Klebsiella oxytoca strain KONIH2 is a Gram-negative, rod-shaped bacterium that thrives as a facultative anaerobe, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this strain relies on organic compounds for energy and carbon, allowing it to adapt to a variety of habitats. Notably, K. oxytoca strain KONIH2 is nonsporulating, which suggests it relies on other survival strategies in its environment rather than spore formation.↵↵The versatility of K. oxytoca strain KONIH2 in utilizing diverse organic substrates and its ability to grow in both aerobic and anaerobic conditions highlight its ecological adaptability. This capacity to thrive in multiple habitats indicates a potential role in nutrient cycling within various environments, where it may contribute to the breakdown of organic matter. The strain's environmental resilience and metabolic flexibility may allow it to occupy niches where other bacteria struggle, underscoring the importance of K. oxytoca in microbial communities. Understanding these traits further may provide insights into its ecological functions and interactions within different ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 NZ_CP026278.1 Bac0016782 Streptomyces lunaelactis strain MM109 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lunaelactis 1535768 NZ_CP026304.1 Bac0016783 Salinigranum rubrum strain GX10 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum 755307 NZ_CP026311.1 Bac0016784 Helicobacter pylori strain 26695-dR "Helicobacter pylori strain 26695-dR is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. It thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in human hosts, indicating its adaptation to a host-associated habitat. ↵↵This strain is notable for its unique morphological features, which contribute to its ability to colonize the gastric mucosa of the host. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, reflecting its specialized ecological niche within the gastric environment. ↵↵In addition to its morphological and physiological traits, the ability of H. pylori strain 26695-dR to survive in the acidic conditions of the stomach underscores the evolutionary adaptations that enable this microbe to persist in such a challenging habitat. Understanding the traits of this strain not only enhances our knowledge of H. pylori biology but also informs potential avenues for research into its interactions with the host microbiome and implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP026326.1 Bac0016785 Sphingobium sp. SCG-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. SCG-1 2072936 NZ_CP026372.1 Bac0016786 Mixta gaviniae strain DSM 22758 "Mixta gaviniae strain DSM 22758 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobe/anaerobe respiration, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for this strain is 37.0°C, which suggests a potential adaptability to warm-blooded hosts or environments with similar thermal conditions. ↵↵As a member of the microbial community, Mixta gaviniae may play a crucial role in various ecological processes, particularly in environments where organic matter decomposition occurs under variable oxygen levels. Its facultative anaerobic capabilities enable it to utilize different metabolic pathways depending on the availability of oxygen, potentially influencing the dynamics of nutrient cycling and energy flow in its habitat. This adaptability could also allow Mixta gaviniae to inhabit a range of ecological niches, contributing to its resilience in fluctuating environmental conditions. Further research on this strain may reveal its specific roles within microbial communities and its interactions with other organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Mixta Mixta gaviniae Gram-negative rod facultative aerobe/anaerobe 37 mesophilic 665914 NZ_CP026377.1 Bac0016787 Pseudomonas sp. PONIH3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. PONIH3 1636610 NZ_CP026386.1 Bac0016788 Klebsiella pneumoniae strain KPNIH48 "Klebsiella pneumoniae strain KPNIH48 is a Gram-negative, rod-shaped bacterium characterized by its occurrence in various arrangements, including chains, pairs, and singles. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a chemoheterotroph, KPNIH48 derives its energy from organic compounds, which aligns with its known habitat associated with hosts.↵↵Optimal growth for KPNIH48 occurs at 37.0°C, a temperature commonly found in mammalian hosts, suggesting a potential adaptation for survival in warm-blooded organisms. The ability to form distinct arrangements may facilitate its colonization and persistence in host tissues through enhanced biofilm formation or evasion of the host immune response. The ecological role of K. pneumoniae strain KPNIH48 may include participation in the microbiota of various hosts, where it could contribute to the balance of microbial communities. Understanding the traits of this strain can provide insights into its interactions within host environments, potentially influencing health and disease dynamics in associated organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP026395.1 Bac0016789 Pseudomonadaceae bacterium SI-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonadaceae bacterium SI-3 2079806 NZ_CP026511.1 Bac0016790 Arthrobacter sp. PGP41 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. PGP41 2079227 NZ_CP026514.1 Bac0016791 Helicobacter pylori strain dRdM2addM2 "Helicobacter pylori strain dRdM2addM2 is a Gram-negative bacterium characterized by its spiral shape (spirilla) and a cell arrangement that occurs in singles. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. H. pylori strain dRdM2addM2 exhibits a microaerophilic oxygen requirement, indicating that it requires lower levels of oxygen for growth compared to atmospheric conditions.↵↵The specific adaptations of H. pylori, including its unique morphology and microaerophilic lifestyle, suggest a specialization for colonization within the gastric niche of its host. The ability to maintain viability and metabolic activity under reduced oxygen tensions likely plays a crucial role in its survival in the hostile environment of the stomach, where pH levels fluctuate and oxygen availability is limited. This ecological strategy may facilitate its persistence in the gastric mucosa, potentially contributing to its ecological role in the microbiome of its host. Understanding the specific traits of H. pylori strain dRdM2addM2 can provide insights into its interactions with host systems and the potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP026515.1 Bac0016792 Solidesulfovibrio carbinolicus strain DSM 3852 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio carbinolicus 296842 NZ_CP026539.1 Bac0016793 Cupriavidus metallidurans strain Ni-2 "Cupriavidus metallidurans strain Ni-2 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is characterized by its facultative anaerobic nature, allowing it to thrive in environments with varying levels of oxygen. Optimal growth occurs at a temperature of approximately 30.0°C, suggesting a preference for mesophilic conditions. The specialized habitat of C. metallidurans strain Ni-2 indicates an adaptation to specific environmental niches, potentially involving metal-rich substrates, given the genus's known association with heavy metal tolerance.↵↵The ability of C. metallidurans strain Ni-2 to tolerate and possibly utilize metals in its environment aligns with its ecological role in bioremediation. This trait may enable the strain to contribute to the detoxification of contaminated sites, highlighting its potential application in environmental microbiology. Further studies on the metabolic pathways and mechanisms employed by this strain in metal processing could provide insights into its ecological interactions and biotechnological applications." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans Negative Rod Yes Facultative 30 Mesophilic Specialized Free living Singles 119219 NZ_CP026544.1 Bac0016794 Faecalibacterium prausnitzii strain 942/30-2 "Faecalibacterium prausnitzii strain 942/30-2 is a Gram-positive, nonsporulating rod-shaped bacterium classified as a chemoheterotroph, with an optimal growth temperature of 37.0°C. This strain thrives in anaerobic conditions, indicating its reliance on environments devoid of oxygen for metabolic processes. ↵↵F. prausnitzii is predominantly found in various habitats, suggesting a versatile ecological niche that may include the gastrointestinal tract of humans and other animals. Its ability to adapt to multiple environments underscores its potential role in microbial communities, particularly in relation to gut health. Notably, this bacterium is often studied for its beneficial associations with host physiology, particularly in the context of maintaining intestinal homeostasis. ↵↵The presence of F. prausnitzii in the gut microbiota is associated with anti-inflammatory properties, and its functional contributions to gut health may be significant, although specific interactions and mechanisms remain an area for further investigation. The strain's anaerobic nature and energy acquisition strategies suggest it plays a role in the fermentation processes that are crucial for the metabolism of dietary fibers. Understanding the ecological roles of F. prausnitzii, such as its contributions to short-chain fatty acid production, can provide insights into its importance in human health and disease prevention." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 NZ_CP026548.1 Bac0016795 Klebsiella pneumoniae strain NUHL30457 "Klebsiella pneumoniae strain NUHL30457 is a Gram-negative, nonsporulating, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This strain is a facultative anaerobe, demonstrating versatility in its oxygen requirements, which allows it to thrive in diverse environments, particularly within host-associated habitats. The optimal growth temperature for K. pneumoniae NUHL30457 is 37.0 °C, aligning with the physiological temperature of many mammalian hosts.↵↵As a chemoheterotroph, K. pneumoniae NUHL30457 derives its energy from organic compounds, which is characteristic of many bacteria in the Enterobacteriaceae family. The strain's ability to adapt to both aerobic and anaerobic conditions may facilitate its survival and persistence in host environments, where fluctuating oxygen levels can occur. ↵↵The ecological insight into K. pneumoniae NUHL30457 lies in its potential role within the microbiota of various hosts. By occupying niches in the gastrointestinal tract, it may contribute to the complex interplay of microbial communities, potentially influencing nutrient cycling and host health. Understanding the traits of this strain can further elucidate its interactions within host-associated ecosystems and the broader implications for microbial dynamics and health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP026588.1 Bac0016796 Clostridiaceae bacterium 14S0207 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium 14S0207 2082193 NZ_CP026600.1 Bac0016797 Saccharobesus litoralis strain CCB-QB4 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Saccharobesus Saccharobesus litoralis 2172099 NZ_CP026605.1 Bac0016798 Bacillus anthracis strain HDZK-BYSB7 "Bacillus anthracis strain HDZK-BYSB7 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives optimally at 37.0°C. This strain is a chemoheterotroph, relying on organic compounds as its energy source. It is capable of growth in both aerobic and anaerobic conditions, indicating its classification as a facultative anaerobe. ↵↵The natural habitat of Bacillus anthracis strain HDZK-BYSB7 is soil, where it can persist in a spore form, allowing it to endure harsh environmental conditions. This ability to sporulate is a key characteristic of the species, facilitating survival and potential dissemination in the environment. ↵↵The ecological role of this strain, as with other members of the Bacillus genus, may include contributions to nutrient cycling and soil health, reflecting its adaptation to terrestrial ecosystems. The sporulation process not only aids in survival but also plays a significant role in the bacterium's interaction with its environment, possibly influencing microbial community dynamics in soil habitats. Further research into this strain could provide insights into its specific ecological interactions and contributions to soil microbiomes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NZ_CP026608.1 Bac0016799 Acinetobacter sp. SWBY1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. SWBY1 2079596 NZ_CP026616.1 Bac0016800 Escherichia coli strain FORC_082 "Escherichia coli strain FORC_082 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for FORC_082 is 37.0°C, which aligns with the typical physiological temperature of its host organisms.↵↵As a member of the Escherichia genus, this strain is likely to be host-associated, indicating a relationship with specific biological hosts. While the precise ecological role of FORC_082 remains to be fully elucidated, its adaptation to a host-associated habitat suggests potential interactions with the host's microbiome and metabolic processes. Further research into the specific conditions and interactions experienced by FORC_082 could provide valuable insights into its ecological function within its host environment, including its contributions to nutrient cycling or its roles in symbiotic relationships. This adaptability also raises questions about its potential influence on host health and the broader implications for understanding microbial ecology in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP026643.1 Bac0016801 Streptomyces dengpaensis strain XZHG99 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces dengpaensis 2049881 NZ_CP026653.1 Bac0016802 Pseudomonas sp. SWI6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. SWI6 2083051 NZ_CP026676.1 Bac0016803 Brevibacterium linens strain ATCC 19391 "Brevibacterium linens strain ATCC 19391 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and is nonsporulating. This strain is notably found in diverse environments, including arsenic-contaminated well water, groundwater, and the rind of Danish Danbo cheese, highlighting its adaptability to both natural and anthropogenic habitats.↵↵As a member of the Actinobacteria phylum, B. linens plays a significant role in the microbiota of certain cheeses, contributing to flavor development and rind formation. Its presence in arsenic-contaminated environments suggests a potential for bioremediation applications, as certain Brevibacterium species have been investigated for their capacity to tolerate and possibly transform toxic compounds. ↵↵The ability of B. linens strain ATCC 19391 to thrive in both oxygen-rich environments and in specific ecological niches, such as the cheese rind, underscores its versatility and ecological significance. Moreover, its adaptation to arsenic-laden waters may indicate unique metabolic pathways that warrant further investigation, particularly in the context of environmental microbiology and biotechnological applications. Understanding the physiological and metabolic capabilities of this strain can provide insights into its role in both food systems and contaminated environments." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium linens Positive Rod Aerobe arsenic-contaminated well water; groundwater; rind of a Danish Danbo cheese Nonsporulating 1703 NZ_CP026734.1 Bac0016804 Priestia megaterium strain YC4-R4 "Priestia megaterium strain YC4-R4 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its aerobic metabolism. As a member of the genus Priestia, this strain demonstrates the typical robustness associated with its taxonomic group, thriving in multiple habitats that may include diverse environmental niches. The ability to form spores suggests that P. megaterium strain YC4-R4 possesses mechanisms for survival under adverse conditions, allowing it to endure periods of nutrient scarcity or environmental stress.↵↵The aerobic nature of this strain indicates a dependence on oxygen for its metabolic processes, which may play a role in its ecological adaptability and efficiency in nutrient cycling within its habitats. Given the wide array of environments it can inhabit, Priestia megaterium strain YC4-R4 may contribute to various biogeochemical processes, potentially influencing soil health and microbial community dynamics.↵↵Additionally, the sporulation characteristic not only aids in survival but may also facilitate the dispersal of genetic material and metabolic capabilities, thereby enhancing its ecological competitiveness. This underscores the importance of P. megaterium strain YC4-R4 in microbial ecology, where its resilience and adaptability could have implications for biotechnological applications, such as bioremediation or agricultural enhancement." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 NZ_CP026739.1 Bac0016805 Nocardia cyriacigeorgica strain MDA3349 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia cyriacigeorgica 135487 NZ_CP026746.1 Bac0016806 Devosia sp. I507 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia sp. I507 2083786 NZ_CP026747.1 Bac0016807 Agrobacterium tumefaciens strain 1D1609 "Agrobacterium tumefaciens strain 1D1609 is a Gram-negative, rod-shaped bacterium that thrives optimally at 25.0°C. This strain, like other members of the Agrobacterium genus, is commonly found in diverse habitats, which enables it to interact with a variety of environmental factors and biological systems. As an aerobic organism, A. tumefaciens strain 1D1609 requires oxygen for its metabolic processes, positioning it within ecosystems where oxygen availability is sufficient.↵↵The capacity of this strain to inhabit multiple environments highlights its ecological versatility, which may contribute to its roles in plant-microbe interactions. Although the specific ecological functions of strain 1D1609 remain to be fully elucidated, its classification within the Agrobacterium genus suggests potential involvement in processes such as soil nutrient cycling or plant growth promotion. The adaptability of A. tumefaciens strains to various niches further underscores their significance in microbial ecology and their potential applications in biotechnology, particularly in agricultural contexts where they may influence plant health and development." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP026925.1 Bac0016808 Corynebacterium liangguodongii strain 2184 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium liangguodongii 2079535 NZ_CP026948.1 Bac0016809 Corynebacterium camporealensis strain CIP 105508 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium camporealensis 161896 NZ_CP027001.1 Bac0016810 Cronobacter sakazakii strain CS-931 "Cronobacter sakazakii strain CS-931 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is characterized by its nonsporulating nature and its optimal growth temperature of 37.0 °C, which suggests a potential association with warm-blooded hosts. As an anaerobic organism, C. sakazakii strain CS-931 thrives in environments devoid of oxygen, which may influence its ecological interactions and habitat preferences.↵↵Being host-associated indicates that C. sakazakii strain CS-931 is likely to inhabit specific niches within living organisms, potentially interacting with host microbiomes or contributing to host-specific metabolic processes. The anaerobic requirement also implies that this strain may play a role in anaerobic fermentation processes within its host environment. ↵↵Understanding the characteristics of C. sakazakii strain CS-931 can provide insights into its ecological role, particularly in relation to host-associated microbial communities. The strain's ability to thrive at body temperature and its nonsporulating nature may influence its persistence and survival strategies within host environments, shedding light on the dynamics of microbial populations in health and disease contexts. Further studies could elucidate the specific ecological functions of this strain and its interactions with other microbial species within the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii Negative Rod No 1 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles Nonsporulating 28141 NZ_CP027107.1 Bac0016811 Pseudomonas paraeruginosa strain AR_0356 "Pseudomonas paraeruginosa strain AR_0356 is a Gram-negative, rod-shaped bacterium characterized by its solitary cell arrangement and heterotrophic metabolism. This strain thrives optimally at a temperature of 25.0°C, reflecting its adaptability to a range of environmental conditions. As an aerobic organism, Pseudomonas paraeruginosa strain AR_0356 requires oxygen for its energy production, which positions it well in diverse habitats where oxygen is available.↵↵The heterotrophic nature of this strain allows it to utilize organic compounds as its energy source, contributing to its versatility in various environments. Pseudomonas species, including strain AR_0356, are known for their metabolic diversity, which enables them to exploit a wide range of substrates, further enhancing their ecological adaptability. ↵↵Given its ability to thrive in multiple habitats, Pseudomonas paraeruginosa strain AR_0356 may play a significant role in nutrient cycling and organic matter decomposition in its environments. Its aerobic metabolism and heterotrophic lifestyle suggest that it could contribute to the microbial community dynamics in soil and aquatic systems, where oxygen levels fluctuate. This adaptability and ecological role make Pseudomonas paraeruginosa strain AR_0356 a valuable component of its microbial ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas paraeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 2994495 NZ_CP027170.1 Bac0016812 Acinetobacter baumannii strain AR_0070 "Acinetobacter baumannii strain AR_0070 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotrophic aerobe, indicating its reliance on organic compounds for energy while requiring oxygen for metabolic processes. The optimal growth temperature for strain AR_0070 is 37.0°C, which aligns with the physiological conditions found in many mammalian hosts. ↵↵Acinetobacter baumannii is known for its remarkable adaptability to diverse environments, as evidenced by its ability to thrive in multiple habitats. This versatility may be attributed to its metabolic flexibility, allowing it to utilize various organic substrates for growth. The strain's aerobic nature underscores its requirement for oxygen, which may influence its distribution in different ecological niches, particularly in environments where oxygen is readily available.↵↵The ecological insight into Acinetobacter baumannii strain AR_0070 lies in its potential role in biogeochemical cycles, particularly in nutrient-rich environments where it may contribute to the degradation of organic matter. This aspect of the bacterium's biology could have implications for its interactions within microbial communities and its influence on ecosystem dynamics. Understanding such traits may also inform future studies on the environmental resilience and adaptability of this species in response to changing ecological conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP027179.1 Bac0016813 Lactobacillus sp. CBA3605 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. CBA3605 2099788 NZ_CP027190.1 Bac0016814 Victivallales bacterium CCUG 44730 Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallales bacterium CCUG 44730 2094242 NZ_CP027227.1 Bac0016815 Capnocytophaga sp. oral taxon 878 strain F0545 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 878 1316596 NZ_CP027230.1 Bac0016816 Bacteroides zoogleoformans strain ATCC 33285 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides zoogleoformans 28119 NZ_CP027231.1 Bac0016817 Capnocytophaga sp. oral taxon 864 strain F0512 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sp. oral taxon 864 1316593 NZ_CP027232.1 Bac0016818 Lachnospiraceae bacterium oral taxon 500 strain W11650 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium oral taxon 500 712991 NZ_CP027241.1 Bac0016819 Peptostreptococcaceae bacterium oral taxon 929 strain W2294 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Peptostreptococcaceae bacterium oral taxon 929 2081703 NZ_CP027242.1 Bac0016820 Campylobacter fetus subsp. testudinum strain 772 "Campylobacter fetus subsp. testudinum strain 772 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and its tendency to exist in single or chain arrangements. This strain is host-associated, indicating a potential symbiotic or parasitic relationship with specific host organisms, although the precise host associations remain to be detailed. ↵↵The microaerophilic nature of C. fetus subsp. testudinum strain 772 suggests that it thrives in environments with reduced oxygen levels, which may be characteristic of certain niches within its host. This adaptation could play a significant role in its survival and metabolic processes, allowing it to exploit oxygen-limited habitats that may be inhospitable to other microorganisms.↵↵Understanding the unique traits of Campylobacter fetus subsp. testudinum strain 772 can provide insights into its ecological role within its host environment, particularly in relation to its interactions with the host's immune system and the microbial community. The ability to form chains may also suggest a form of communication or cooperation among cells, which could have implications for its survivability and functionality within the host ecosystem. Further investigation into the ecological dynamics of this strain could yield valuable information about the broader roles of Campylobacter species in their respective environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus Negative Spirilla Yes 1 2 Microaerophilic Mesophilic HostAssociated Free living Chains - Singles 1507806 NZ_CP027287.1 Bac0016821 Geobacillus thermoleovorans strain SGAir0734 "Geobacillus thermoleovorans strain SGAir0734 is a rod-shaped bacterium that thrives in extreme environments, specifically geothermal springs and oil waste. This thermophilic microorganism is adapted to high temperatures, allowing it to play a vital role in the biogeochemical processes occurring in these unique habitats. Its ability to withstand elevated temperatures suggests that it possesses specialized enzymes, potentially useful in biotechnological applications, such as bioremediation of oil-contaminated environments.↵↵The habitat of G. thermoleovorans strain SGAir0734 is indicative of its metabolic versatility, as it can potentially utilize various substrates available in geothermal and oil waste environments. The presence of this strain in geothermal springs implies that it may contribute to the cycling of nutrients and the degradation of organic matter, thereby influencing microbial community dynamics and ecosystem functioning in these extreme thermal niches. Furthermore, its adaptability to oil waste environments highlights its potential utility in the development of sustainable bioprocesses for the degradation of petroleum hydrocarbons.↵↵Overall, the unique habitat of Geobacillus thermoleovorans strain SGAir0734 not only exemplifies the remarkable adaptability of microorganisms to extreme conditions but also emphasizes the importance of such extremophiles in biotechnological innovations aimed at environmental remediation." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus thermoleovorans Rod thermophilic geothermal springs; oil waste 33941 NZ_CP027305.2 Bac0016822 Helicobacter pylori strain FDAARGOS_300 "Helicobacter pylori strain FDAARGOS_300 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at 37.0°C, which aligns with its habitat as a host-associated microbe, commonly found in the gastric mucosa of mammals, including humans. ↵↵The microaerophilic nature of H. pylori indicates that it requires a reduced oxygen concentration for optimal growth, a trait that is likely critical for its survival in the harsh acidic environment of the stomach. The organism's spiral morphology is thought to enhance its motility, allowing it to navigate through the gastric mucus layer and colonize the epithelial surfaces effectively.↵↵Understanding the ecological role of Helicobacter pylori strain FDAARGOS_300 can provide insights into its interactions within the host environment. Its adaptation to a microaerophilic lifestyle suggests a specialized niche, where it may play a role in modulating the gastric microbiome and influencing host immune responses. Further investigation into this strain’s specific interactions and adaptations could shed light on its potential impacts on gastric health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP027404.1 Bac0016823 Providencia rettgeri strain FDAARGOS_330 "Providencia rettgeri strain FDAARGOS_330 is a Gram-negative, rod-shaped bacterium characterized by its nonsporulating nature and facultative anaerobic metabolism. This strain thrives optimally at 37.0°C and utilizes a chemoheterotrophic mode of energy acquisition, allowing it to derive carbon and energy from organic compounds. The habitat of P. rettgeri is diverse, suggesting that this microbe can adapt to various environmental conditions, potentially contributing to its ecological versatility.↵↵As a facultative anaerobe, P. rettgeri demonstrates the ability to grow in both the presence and absence of oxygen, which may provide advantages in fluctuating environments. This metabolic flexibility, combined with its ability to inhabit multiple ecological niches, underlines the organism's potential role in different ecosystems, including its possible involvement in nutrient cycling and interactions with other microbial communities. The adaptability of P. rettgeri to varying environmental conditions may also facilitate its survival in diverse habitats, ranging from aquatic environments to soil and potentially within host organisms. This adaptability highlights the ecological significance of P. rettgeri as a versatile microbe capable of thriving in various settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 587 NZ_CP027418.1 Bac0016824 Gordonia iterans strain Co17 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia iterans 1004901 NZ_CP027433.1 Bac0016825 Pseudomonas koreensis strain P19E3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 NZ_CP027477.1 Bac0016826 Aeromicrobium sp. A1-2 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp. A1-2 2107713 NZ_CP027482.1 Bac0016827 Mycolicibacterium smegmatis MKD8 "Mycolicibacterium smegmatis MKD8 is a Gram-positive, rod-shaped bacterium that predominantly exists as single cells. This microbe thrives in host-associated habitats and exhibits aerobic metabolism, indicating its reliance on oxygen for growth and energy production. As a chemoorganotroph, M. smegmatis MKD8 utilizes organic compounds as its energy source, which is characteristic of many bacteria that inhabit host environments.↵↵Optimal growth of M. smegmatis MKD8 occurs at a temperature of 37.0°C, aligning with the average human body temperature, which suggests a potential adaptation to living in close association with warm-blooded hosts. The bacterium’s ability to survive in a host-associated niche may contribute to its role in microbial communities and could influence its interactions with host immune responses.↵↵The ecological implications of M. smegmatis MKD8's traits highlight its potential involvement in the complex dynamics of host-associated microbiota, where such organisms may play roles in nutrient cycling, immune modulation, or even competition with pathogenic species. Further studies could elucidate its specific interactions within microbial communities and its overall impact on host health, thereby offering insights into the intricate relationships between microbes and their hosts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium smegmatis Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1214915 NZ_CP027541.1 Bac0016828 Stutzerimonas stutzeri strain DW2-1 "Stutzerimonas stutzeri strain DW2-1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, and thrives in aerobic environments, necessitating the presence of oxygen for its metabolic processes. Furthermore, Stutzerimonas stutzeri strain DW2-1 is described as host-associated, indicating a potential relationship with a specific host organism, which may play a significant role in its ecological niche.↵↵The combination of its Gram-negative cell wall structure and aerobic metabolism suggests that Stutzerimonas stutzeri strain DW2-1 may possess unique adaptations for survival and growth in oxygen-rich environments, potentially including the production of specific enzymes or metabolic pathways that enhance its ability to exploit organic substrates found within its host. This strain may contribute to the overall microbial community dynamics within its host, influencing nutrient cycling or other biological processes.↵↵Understanding the traits of Stutzerimonas stutzeri strain DW2-1 can provide insights into its functional roles in the microbiome of its host, which may be crucial for maintaining host health or influencing host physiological processes. Further research into this strain could elucidate its specific contributions to the host-associated microbiota and its interactions with other microbial species in the environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NZ_CP027543.1 Bac0016829 Stenotrophomonas maltophilia strain SJTH1 "Stenotrophomonas maltophilia strain SJTH1 is a Gram-negative, rod-shaped bacterium that thrives in various habitats and exhibits an aerobic metabolism. This strain is part of a versatile group of microorganisms known for their ability to inhabit diverse environments, including soil, water, and plant surfaces. As an aerobe, S. maltophilia strain SJTH1 requires oxygen for growth, which reflects its adaptation to environments where oxygen is readily available.↵↵The ability of S. maltophilia to occupy multiple habitats suggests that it possesses metabolic versatility, allowing it to utilize various organic compounds as carbon sources. This adaptability may contribute to its resilience in fluctuating conditions, enabling it to survive in both natural and anthropogenic ecosystems. Furthermore, the ecological significance of S. maltophilia lies in its potential role in biogeochemical cycles, particularly in nutrient recycling within its diverse habitats.↵↵In summary, Stenotrophomonas maltophilia strain SJTH1 exemplifies the ecological versatility of this species, highlighting its aerobic nature and adaptability to multiple environments, which may have implications for its interactions within microbial communities and its potential contributions to ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 NZ_CP027562.1 Bac0016830 Weissella confusa strain VTT E-90392 "Weissella confusa strain VTT E-90392 is a Gram-negative, rod-shaped bacterium that can be found in various fermented food products, including dry naturally fermented Greek sausage, fermented butter, and Indonesian home-made soya products, as well as in sugar cane environments. This strain exhibits a characteristic cell arrangement where cells can be observed both in chains and as singles, reflecting its adaptability to different fermentation processes. ↵↵As a facultative anaerobe, Weissella confusa strain VTT E-90392 is capable of thriving in both aerobic and anaerobic conditions, which may contribute to its versatility in diverse habitats. The presence of this strain in traditional fermented foods suggests a potential role in contributing to the flavor profiles and preservation of these products. Furthermore, the ability of Weissella confusa to inhabit a range of environments, from specific fermented foods to natural substrates like sugar cane, underscores its ecological significance in fermentation processes and highlights its potential for biotechnological applications in food production. The intricate relationships this strain forms within microbial communities could further influence the fermentation dynamics and overall quality of the food products in which it is involved." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella confusa Negative Rod Facultative anaerobe dry naturally fermented Greek sausage; fermented butter; Indonesian home-made soya product; sugar cane Chains; Singles 1583 NZ_CP027565.1 Bac0016831 Melaminivora suipulveris strain SC2-9 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Melaminivora Melaminivora suipulveris 2109913 NZ_CP027667.1 Bac0016832 Pseudomonas sessilinigenes strain CMR12a Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sessilinigenes 658629 NZ_CP027706.1 Bac0016833 Pseudomonas chlororaphis subsp. chlororaphis strain DSM 50083 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis 333 NZ_CP027712.1 Bac0016834 Pseudomonas chlororaphis subsp. aureofaciens strain P2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis 587851 NZ_CP027719.1 Bac0016835 Pseudomonas sp. R5-89-07 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. R5-89-07 658644 NZ_CP027727.1 Bac0016836 Pseudomonas sp. R4-39-08 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. R4-39-08 1173288 NZ_CP027733.1 Bac0016837 Pseudomonas chlororaphis strain B25 "Pseudomonas chlororaphis strain B25 is a Gram-negative, rod-shaped bacterium commonly found in the rhizosphere and root nodules of the plant Chamaecytisus albus. This strain is notable for its ecological role in the soil and plant microbiome, where it may contribute to nutrient cycling and plant health. The presence of Pseudomonas chlororaphis in the nodules indicates its potential involvement in symbiotic relationships with plants, which could enhance nitrogen fixation and overall plant vigor. ↵↵The specific habitat preferences of strain B25, particularly within the nodules and rhizosphere of Chamaecytisus albus, suggest a specialization that may allow it to thrive in these microenvironments. Understanding the interactions of this strain within its ecological niche can provide insights into its potential applications in agriculture, particularly in promoting plant growth and health. The unique combination of traits exhibited by Pseudomonas chlororaphis strain B25 emphasizes the importance of microbial diversity in supporting plant systems and highlights the potential for leveraging such bacteria in sustainable agricultural practices." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis negative Rod nodules of Chamaecytisus albus; rhizosphere; root nodules 587753 NZ_CP027753.1 Bac0016838 Pseudomonas synxantha strain 30B Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas synxantha 47883 NZ_CP027754.1 Bac0016839 Pseudomonas sp. LBUM920 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LBUM920 3467181 NZ_CP027762.1 Bac0016840 Tetragenococcus halophilus strain LMG 26042 "Tetragenococcus halophilus strain LMG 26042 is a halophilic cocci-shaped microbe known for its adaptation to high-salinity environments. As a member of the genus Tetragenococcus, this strain showcases characteristics typical of halophilic microorganisms, which are capable of thriving in extreme osmotic conditions. The coccal morphology of T. halophilus contributes to its resilience and potential functionality in various saline habitats.↵↵Halophilic organisms such as T. halophilus are often studied for their unique biochemical pathways that enable survival in environments with elevated salt concentrations. The ability of this strain to maintain cellular integrity and metabolic functions under high osmotic pressure is of significant interest, particularly in applications related to food preservation and fermentation processes. Such adaptations may also provide insights into the evolutionary mechanisms that allow life to persist in extreme conditions.↵↵The presence of Tetragenococcus halophilus strain LMG 26042 in saline ecosystems suggests its role in biogeochemical cycles, particularly in the degradation of organic matter and nutrient cycling in hypersaline environments. This strain exemplifies the diversity of microbial life that thrives in conditions previously thought to be inhospitable, highlighting the ecological importance of halophilic microorganisms in sustaining ecosystem functions in saline habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus halophilus Cocci 51669 NZ_CP027769.1 Bac0016841 Staphylococcus felis strain ATCC 49168 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus felis 46127 NZ_CP027770.1 Bac0016842 Variovorax sp. PMC12 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. PMC12 2126319 NZ_CP027773.1 Bac0016843 Clostridium botulinum strain RF5 "Clostridium botulinum strain RF5 is a Gram-positive, rod-shaped bacterium that exhibits a diverse cell arrangement, occurring as singles, pairs, or chains. This anaerobic organism thrives optimally at a temperature of 37.0°C and is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. ↵↵C. botulinum strain RF5 is known to inhabit multiple environments, which may include soil and aquatic settings, where it can play a role in the decomposition of organic materials. Its anaerobic nature suggests that it is adapted to environments devoid of oxygen, allowing it to compete effectively in niches where oxygen-sensitive metabolic processes dominate. ↵↵The ability of strain RF5 to form various cell arrangements may provide insights into its adaptive strategies in fluctuating environmental conditions. These arrangements could facilitate interactions with other microbial communities or enhance its survival in adverse conditions, highlighting the organism's ecological versatility. Understanding the specific environmental contexts in which C. botulinum strain RF5 thrives could further elucidate its role in microbial dynamics and nutrient cycling within its habitats." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1491 NZ_CP027779.1 Bac0016844 Tetragenococcus osmophilus strain JCM 31126 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Tetragenococcus Tetragenococcus osmophilus 526944 NZ_CP027785.1 Bac0016845 Pulveribacter suum strain SC2-7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Pulveribacter Pulveribacter suum 2116657 NZ_CP027792.1 Bac0016846 Prescottella equi strain DSSKP-R-001 "Prescottella equi strain DSSKP-R-001 is a Gram-positive, coccoid bacterium that exhibits facultative anaerobic metabolism and relies on chemoheterotrophic processes for energy. This strain is characterized by its nonsporulating nature, indicating that it does not produce spores as a means of survival under adverse conditions. The versatility of Prescottella equi strain DSSKP-R-001 is highlighted by its ability to thrive in multiple habitats, suggesting a degree of ecological adaptability. ↵↵The facultative anaerobic capability of this microbe allows it to utilize both aerobic respiration in the presence of oxygen and fermentation or anaerobic respiration when oxygen is absent. This metabolic flexibility may confer advantages in diverse environments, enabling Prescottella equi strain DSSKP-R-001 to colonize various niches. Understanding the ecological roles and interactions of this strain in its natural habitats could provide insights into its potential applications in biotechnology or environmental microbiology. Further research could elucidate how its metabolic pathways and habitat preferences contribute to its ecological success and interactions within microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Prescottella Prescottella equi Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating Animal 43767 NZ_CP027795.1 Bac0016847 Limosilactobacillus reuteri strain WHH1689 "Limosilactobacillus reuteri strain WHH1689 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Found in multiple habitats, Limosilactobacillus reuteri is known for its adaptability, which may contribute to its widespread presence in various ecosystems, including the gastrointestinal tracts of animals and fermented foods.↵↵The rod shape and chain arrangement of L. reuteri WHH1689 may enhance its ability to colonize specific niches within its diverse habitats, potentially aiding in nutrient acquisition and biofilm formation. As a facultative anaerobe, this strain can efficiently utilize available oxygen, while also maintaining metabolic functions in low-oxygen environments. This versatility not only suggests a robust survival strategy but also hints at its potential role in complex microbial communities, where it may interact with other microorganisms and contribute to the overall metabolic processes.↵↵The adaptability of Limosilactobacillus reuteri strain WHH1689 across various environments underscores its ecological significance, possibly influencing fermentation processes in food production and contributing to the health of the microbiota in host organisms. Understanding the specific conditions that favor its growth and survival may provide insights into its functional roles in both natural and engineered ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 NZ_CP027805.1 Bac0016848 Cyclonatronum proteinivorum strain Omega Pseudomonadati Balneolota Balneolia Balneolales Cyclonatronaceae Cyclonatronum Cyclonatronum proteinivorum 1457365 NZ_CP027806.1 Bac0016849 Leptospira santarosai strain U160 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira santarosai 28183 NZ_CP027844.1 Bac0016850 Plesiomonas shigelloides strain MS-17-188 "Plesiomonas shigelloides strain MS-17-188 is a Gram-negative, vibrio-shaped bacterium characterized as a nonsporulating, aerobic chemoheterotroph. This strain thrives optimally at a temperature of 30.0°C, indicating its potential adaptation to mesophilic environments. P. shigelloides is known to inhabit multiple ecological niches, suggesting a versatile metabolic capacity that allows it to utilize various organic compounds as energy sources.↵↵The aerobic nature of this strain implies that it requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability varies. The presence of P. shigelloides in diverse habitats underscores its ecological plasticity and ability to occupy various ecological roles, possibly including nutrient cycling and interactions with other microorganisms.↵↵This strain's ability to thrive in different environments highlights the ecological significance of Plesiomonas species as they may play a role in the microbial dynamics of aquatic ecosystems and contribute to the overall biodiversity of microbial communities. Further investigation into its metabolic pathways and interactions within its habitats may yield valuable insights into the ecological functions these bacteria perform." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Plesiomonas Plesiomonas shigelloides Negative Vibrio Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 703 NZ_CP027852.1 Bac0016851 Aeromonas rivipollensis strain KN-Mc-11N1 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas rivipollensis 948519 NZ_CP027856.1 Bac0016852 Ahniella affigens strain D13 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Ahniella Ahniella affigens 2021234 NZ_CP027861.1 Bac0016853 Curtobacterium sp. SGAir0471 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. SGAir0471 2070337 NZ_CP027869.1 Bac0016854 Agrococcus sp. SGAir0287 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus sp. SGAir0287 2070347 NZ_CP027942.1 Bac0016855 Lysinibacillus sp. SGAir0095 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. SGAir0095 2070463 NZ_CP028083.1 Bac0016856 Pontibacter sp. SGAir0037 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter sp. SGAir0037 2571030 NZ_CP028093.1 Bac0016857 Christiangramia fulva strain SH35 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia fulva 2126553 NZ_CP028136.1 Bac0016858 Rathayibacter festucae DSM 15932 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter festucae 1328866 NZ_CP028137.1 Bac0016859 Vibrio parahaemolyticus strain R14 "Vibrio parahaemolyticus strain R14 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates facultative anaerobic metabolism. This strain is nonsporulating and thrives optimally at a temperature of 20.0°C, indicating a preference for cooler aquatic environments. As a heterotroph, V. parahaemolyticus strain R14 relies on organic compounds as its energy source, which aligns with its aquatic habitat where organic matter is often available.↵↵The ecological role of V. parahaemolyticus strain R14 in marine ecosystems may involve the degradation of organic materials, contributing to nutrient cycling. Its ability to survive in varying oxygen conditions allows it to inhabit diverse niches within aquatic environments, from oxygen-rich surface waters to more anoxic sediment layers. This adaptability not only aids in its survival but also suggests a potential role in the dynamics of microbial communities in marine habitats, influencing the availability of nutrients and the overall health of the ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 NZ_CP028142.1 Bac0016860 Neisseria mucosa strain ATCC 19696 "Neisseria mucosa strain ATCC 19696 is a Gram-negative bacterium characterized as a facultative anaerobe. This strain, belonging to the genus Neisseria, is notable for its ability to thrive in both aerobic and anaerobic environments, which may contribute to its versatility in various habitats. ↵↵Neisseria mucosa is typically found as part of the normal flora in the human body, particularly within the mucosal surfaces. Its Gram-negative cell wall structure, featuring a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, is indicative of its classification within the Proteobacteria phylum. The facultative anaerobic lifestyle of this strain allows it to utilize a range of metabolic pathways depending on the availability of oxygen, enabling it to adapt to diverse environmental conditions.↵↵While specific pathogenicity traits of N. mucosa strain ATCC 19696 are not detailed, the presence of this bacterium in the human microbiome suggests a role in maintaining mucosal health. Its ability to coexist with other microbial species may contribute to the stability of microbial communities in the host. This characteristic highlights the potential for N. mucosa to play a role in competitive exclusion, thereby preventing the colonization of more pathogenic microorganisms, which can be crucial for host defense mechanisms. Future studies may reveal more about the ecological interactions and the precise contributions of N. mucosa to human health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria mucosa Negative Facultative anaerobe 488 NZ_CP028150.1 Bac0016861 Lactococcus lactis subsp. lactis strain 14B4 "Lactococcus lactis subsp. lactis strain 14B4 is a Gram-positive, nonsporulating coccus that demonstrates facultative anaerobic growth, thriving optimally at a temperature of 40.0°C. This strain is part of a diverse group of bacteria that inhabit various environments, indicating its ecological adaptability. ↵↵The coccoid morphology of L. lactis subsp. lactis strain 14B4 is typical of the Lactococcus genus, which is widely recognized for its role in the fermentation of dairy products. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, providing it with versatile metabolic capabilities that may contribute to its survival in diverse habitats.↵↵The ability of L. lactis subsp. lactis strain 14B4 to thrive at elevated temperatures suggests potential applications in industrial fermentation processes, particularly in the dairy sector, where temperature control is critical. Additionally, the strain's nonsporulating nature indicates that it relies on vegetative growth, which could influence its behavior in fermentative environments.↵↵The ecological versatility of L. lactis subsp. lactis strain 14B4, combined with its specific growth requirements, highlights its potential significance in both natural and engineered ecosystems, particularly in the context of food fermentation and preservation. Further exploration of its metabolic pathways may provide insights into its role in microbial community dynamics and food production efficiency." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP028160.1 Bac0016862 Salmonella enterica subsp. enterica serovar Concord strain "Salmonella enterica subsp. enterica serovar Concord strain is a Gram-negative bacterium characterized by its spirilla shape and the ability to exist in both single and chain arrangements. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions typically found in warm-blooded hosts. As a chemoorganotroph, it derives its energy from organic compounds, which is indicative of its adaptive strategies in host-associated habitats.↵↵The microaerophilic nature of this strain suggests that it requires reduced levels of oxygen for optimal growth, which may reflect its ecological niche within the gastrointestinal tracts of animals. The presence of S. enterica serovar Concord in host-associated environments highlights its potential role in the microbial community dynamics of the gut, where it may interact with other microbial species and influence host health and disease states.↵↵Understanding the specific traits of S. enterica serovar Concord can provide insights into its ecological adaptations, showcasing how this bacterium may exploit microenvironments within host organisms to optimize its survival and proliferation. Such knowledge could be pivotal in comprehending the broader implications of Salmonella strains in microbial ecology and their interactions with host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 483687 NZ_CP028196.1 Bac0016863 Paracidovorax avenae strain MD5 "Paracidovorax avenae strain MD5 is a Gram-negative bacterium characterized by its distinct cellular morphology and biochemical properties. This strain is part of a broader taxonomic group known for its diverse metabolic capabilities. Being Gram-negative, P. avenae strain MD5 possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides, a feature typical of this bacterial group. This structural characteristic may influence its interactions with the environment, particularly in terms of permeability and resistance to certain antibiotics.↵↵The metabolic pathways and ecological roles of P. avenae strain MD5 warrant further investigation, as Gram-negative bacteria are often involved in nutrient cycling and can play significant roles in various ecosystems. Their adaptability often allows them to inhabit diverse environments, which may include soil, water, and plant-associated niches. The specific ecological interactions of P. avenae strain MD5, however, remain to be fully elucidated.↵↵Research into this strain may provide insights into its potential applications in biotechnology or agriculture, particularly if it exhibits unique metabolic traits that could be harnessed for bioremediation or promoting plant health. Understanding the specific ecological functions of P. avenae strain MD5 could enhance our knowledge of microbial community dynamics and their contributions to ecosystem stability and function." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax avenae Negative Mesophilic 80867 NZ_CP028295.1 Bac0016864 Pseudoduganella armeniaca strain ZMN-3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Pseudoduganella Pseudoduganella armeniaca 2072590 NZ_CP028324.1 Bac0016865 Novosphingobium sp. THN1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. THN1 1016987 NZ_CP028347.1 Bac0016866 Pantoea vagans strain PV989 "Pantoea vagans strain PV989 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and nonsporulating nature. This strain is typically found in host-associated environments, suggesting a close relationship with its biological hosts. The facultative anaerobic trait indicates that P. vagans strain PV989 can thrive in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within its habitat. ↵↵As a member of the broader Pantoea genus, which is often associated with plants and other organisms, this strain may play a role in interactions with its host, potentially influencing microbial communities or contributing to the health of its environment. The nonsporulating characteristic further emphasizes its reliance on specific conditions for survival and growth, as it does not form spores to endure unfavorable circumstances. ↵↵The unique ecological insight into Pantoea vagans strain PV989 lies in its potential for symbiotic relationships within host-associated environments, which may facilitate nutrient cycling or enhance host resilience against environmental stresses. Understanding the traits of this bacterium could provide valuable information for ecological studies and applications in agriculture or biotechnology, where beneficial microbial interactions are crucial." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea vagans Negative Rod No 1 2 Facultative Mesophilic HostAssociated Free living Nonsporulating 470934 NZ_CP028350.1 Bac0016867 Streptomyces sp. P3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. P3 2135430 NZ_CP028369.1 Bac0016868 Streptococcus mitis strain SK637 "Streptococcus mitis strain SK637 is a Gram-positive coccus that typically forms chains or pairs. As a nonsporulating bacterium, it is well adapted to its host-associated habitat, demonstrating the ability to thrive in environments where it may encounter varying levels of oxygen. Being a facultative anaerobe, S. mitis strain SK637 can grow in both aerobic and anaerobic conditions, allowing it to exploit diverse ecological niches within host organisms.↵↵This strain is part of the larger Streptococcus mitis group, which is commonly found in the human oral cavity and upper respiratory tract. The presence of S. mitis in these locations suggests a potential role in maintaining oral and systemic health, as it may contribute to the complex microbial community that influences host interactions and immune responses. ↵↵The ability of Streptococcus mitis strain SK637 to form chains and pairs may enhance its colonization capabilities, facilitating its integration into biofilms on mucosal surfaces. This trait could be significant in understanding the dynamics of microbial communities in host-associated environments, where cooperative interactions among bacteria are crucial for survival and function. Further exploration of this strain may provide insights into its ecological roles and potential applications in health or biotechnology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 NZ_CP028415.1 Bac0016869 Celeribacter baekdonensis strain LH4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter baekdonensis 875171 NZ_CP028472.1 Bac0016870 Yersinia massiliensis strain GTA Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia massiliensis 419257 NZ_CP028488.1 Bac0016871 Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 "Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 is a Gram-negative, rod-shaped bacterium that exhibits a variety of cell arrangements, including chains, pairs, and singles. This strain thrives optimally at 22.0°C and is classified as a heterotroph, utilizing organic compounds as its energy source. As a facultative aerobe, it is capable of surviving in both aerobic and anaerobic environments, allowing it to occupy diverse habitats.↵↵The ability of strain WCHAH045096 to grow under varying oxygen conditions suggests a versatile metabolic capacity, which may enable it to exploit a wide range of ecological niches. Its adaptation to multiple habitats, combined with its heterotrophic lifestyle, indicates a potential role in nutrient cycling within its environment. Overall, the traits of this strain highlight its ecological flexibility and suggest that it may contribute to the microbiome dynamics in freshwater and other environments where it is found." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 196023 NZ_CP028562.2 Bac0016872 Escherichia coli strain 143 "Escherichia coli strain 143 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli strain 143 is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments. ↵↵This versatility in oxygen utilization not only supports its survival in various niches within host organisms but also suggests a potential role in diverse metabolic processes. The ability to thrive in host-associated environments indicates that E. coli strain 143 may engage in complex interactions with host microbiomes, which can influence nutrient cycling and host health. Its typical habitat within the gastrointestinal tract of mammals further underscores its ecological significance, as it may contribute to the maintenance of gut homeostasis. Understanding the traits of Escherichia coli strain 143 can provide insights into its role in microbial communities and its potential impact on host physiology and health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP028607.1 Bac0016873 Flavobacterium magnum strain HYN0048 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium magnum 2162713 NZ_CP028811.1 Bac0016874 Methylobacterium currus strain PR1016A Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium currus 2051553 NZ_CP028843.1 Bac0016875 Gemmobacter aquarius strain HYN0069 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paragemmobacter Paragemmobacter aquarius 2169400 NZ_CP028918.1 Bac0016876 Mangrovivirga cuniculi strain R1DC9 Pseudomonadati Bacteroidota Cytophagia Cytophagales Mangrovivirgaceae Mangrovivirga Mangrovivirga cuniculi 2715131 NZ_CP028923.1 Bac0016877 Colwellia sp. Arc7-D Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. Arc7-D 2161872 NZ_CP028924.1 Bac0016878 Morganella morganii strain AR_0133 "Morganella morganii strain AR_0133 is a Gram-negative, rod-shaped bacterium that thrives in natural environments, particularly in sewage. This strain demonstrates facultative anaerobic metabolism, allowing it to adapt to varying oxygen conditions. Its capability to survive in both aerobic and anaerobic environments may confer advantages in nutrient-rich habitats, such as sewage, where oxygen levels can fluctuate significantly.↵↵As a member of the Enterobacteriaceae family, M. morganii is known for its metabolic diversity, which can facilitate the degradation of complex organic compounds in its environment. This metabolic versatility is particularly relevant in sewage ecosystems, where the breakdown of organic matter is crucial for nutrient cycling and overall ecosystem health. The presence of M. morganii strain AR_0133 in such habitats suggests its potential role in biogeochemical processes, including nitrogen cycling, due to its ability to utilize various nitrogenous compounds.↵↵Understanding the traits and ecological roles of M. morganii strain AR_0133 can provide insights into its contributions to microbial communities in sewage systems and its potential applications in bioremediation efforts aimed at mitigating pollution in aquatic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Rod Facultative anaerobe mesophilic natural environment; sewage 582 NZ_CP028957.1 Bac0016879 Cronobacter sakazakii strain GZcsf-1 "Cronobacter sakazakii strain GZcsf-1 is a Gram-negative, non-sporulating rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates an optimal growth temperature of 37.0°C, indicating its adaptation to a host-associated environment, which aligns with its physiological and ecological characteristics. As an anaerobe, C. sakazakii strain GZcsf-1 thrives in environments devoid of oxygen, suggesting a potential niche in anaerobic habitats within host organisms.↵↵The rod morphology and specific cell arrangement may influence the strain's interactions with its environment and potential hosts. Given its association with host environments, this strain could play a role in specific microbial communities or contribute to the microbial dynamics within its ecological niche. The absence of sporulation capability indicates that this strain likely relies on other survival strategies to withstand environmental challenges.↵↵Understanding the traits of C. sakazakii strain GZcsf-1 enhances our knowledge of its biological capabilities and ecological roles, particularly in anaerobic environments associated with hosts. Further research into its interactions and adaptations could provide insights into its physiological ecology and potential implications in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii Negative Rod No 1 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles Nonsporulating 28141 NZ_CP028975.1 Bac0016880 Lactiplantibacillus plantarum strain LQ80 "Lactiplantibacillus plantarum strain LQ80 is a Gram-positive, rod-shaped bacterium that typically occurs in chains and exhibits facultative anaerobic growth. This strain thrives optimally at a temperature of 25.0°C and is known to inhabit diverse environments, indicating its adaptability and potential versatility in various ecological niches. ↵↵As a member of the Lactobacillus genus, L. plantarum is commonly found in fermented foods and the gastrointestinal tracts of humans and animals, suggesting its role in food fermentation and potential contributions to gut microbiota. The ability to grow in the presence or absence of oxygen enhances its survivability in fluctuating conditions, allowing it to thrive in both aerobic and anaerobic habitats. ↵↵The ecological versatility of LQ80, along with its chain-forming characteristic, may facilitate its colonization within complex microbial communities, potentially influencing the fermentation processes in its natural habitats. This adaptability underscores the importance of L. plantarum strain LQ80 in various biotechnological applications, particularly in food science and probiotic development, where its functional properties can be harnessed for health benefits. Understanding the specific roles and interactions of this strain within its environments could provide valuable insights into its applications in promoting microbial diversity and stability in fermented products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 NZ_CP028978.1 Bac0016881 Streptomyces nigra strain 452 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nigra 1827580 NZ_CP029043.1 Bac0016882 Microbulbifer sp. A4B17 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer sp. A4B17 359370 NZ_CP029064.1 Bac0016883 Hymenobacter nivis strain NBRC 111535 "Hymenobacter nivis strain NBRC 111535 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and is non-spore-forming. This strain thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler environments, which may reflect its adaptation to specific ecological niches. ↵↵The Gram-negative nature of H. nivis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in its environmental interactions, including resistance to certain antibiotics and the ability to engage in complex interactions with other microorganisms. As an aerobic organism, H. nivis requires oxygen for its growth and metabolic processes, which may limit its habitat to well-oxygenated environments.↵↵The unique combination of traits exhibited by Hymenobacter nivis strain NBRC 111535 suggests its potential role in biogeochemical cycling within its ecological niche, particularly in cooler, aerobic settings where organic matter decomposition occurs. This may contribute to soil health and nutrient availability in such environments, highlighting the ecological significance of this strain in maintaining ecosystem functions." Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter nivis Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 1850093 NZ_CP029145.1 Bac0016884 Dokdonia sp. Dokd-P16 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Dokdonia Dokdonia sp. Dokd-P16 2173169 NZ_CP029151.1 Bac0016885 Streptomyces tsukubensis NRRL18488 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tsukubensis 1114943 NZ_CP029157.1 Bac0016886 Methylobacterium sp. DM1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. DM1 2067957 NZ_CP029173.1 Bac0016887 Aquabacterium olei strain NBRC 110486 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Aquabacterium Aquabacterium olei 1296669 NZ_CP029210.1 Bac0016888 Escherichia coli strain ECCRA-119 "Escherichia coli strain ECCRA-119 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as individual cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, ECCRA-119 can metabolize in both the presence and absence of oxygen, allowing it to adapt to varying oxygen levels within its environment. ↵↵The versatility in its oxygen requirement suggests that ECCRA-119 is well-suited to inhabit diverse niches within host organisms, where it may encounter fluctuating oxygen conditions. This adaptation may also enable it to play a role in the gut microbiome, contributing to the overall metabolic activities and interactions within microbial communities. Furthermore, the ability to exist as single cells or in pairs may provide advantages in colonization dynamics and nutrient uptake, potentially influencing its ecological interactions. Understanding these traits can shed light on the strain's functional role in host-associated environments, emphasizing the importance of E. coli strains in microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029243.1 Bac0016889 Bacillus anthracis strain 17OD930 "Bacillus anthracis strain 17OD930 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, enhancing its resilience in various environmental conditions. This strain thrives optimally at a temperature of 37.0°C and utilizes a chemoheterotrophic metabolism, relying on organic compounds as its energy source. As a facultative anaerobe, it can grow in both aerobic and anaerobic environments, allowing it to adapt to fluctuating oxygen levels in its habitat. ↵↵Primarily found in soil, Bacillus anthracis strain 17OD930 plays a significant role in nutrient cycling within terrestrial ecosystems. The sporulation capability is particularly noteworthy, as it allows the organism to survive in harsh conditions, including extreme temperatures and desiccation. This adaptation facilitates the persistence of the strain in its natural habitat, contributing to its ecological resilience. ↵↵Furthermore, the presence of this strain in soil environments may influence microbial community dynamics, especially in terms of nutrient availability and competition with other soil-dwelling microbes. Understanding the specific traits of Bacillus anthracis strain 17OD930 enhances our knowledge of its ecological role and potential interactions within the microbiome of soil ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus anthracis Positive Rod No 1 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Soil Free living Sporulating 1392 NZ_CP029325.1 Bac0016890 Mycobacterium avium subsp. hominissuis strain MAC109 "Mycobacterium avium subsp. hominissuis strain MAC109 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement. This strain is classified as a chemoorganotroph, indicating that it derives energy through the oxidation of organic compounds. M. avium subsp. hominissuis strain MAC109 thrives optimally at a temperature of 37.0°C, a characteristic that aligns with its host-associated habitat, suggesting an adaptation to the physiological conditions of warm-blooded animals. ↵↵As a microaerophile, this strain requires limited oxygen for growth, reflecting its ecological niche within host environments where oxygen levels may be lower than atmospheric concentration. The strain's adaptation to microaerophilic conditions may influence its metabolic pathways and interactions with host immune responses. ↵↵Understanding the traits of M. avium subsp. hominissuis strain MAC109 provides insights into its potential role in host-associated microbial communities, particularly in the context of symbiotic relationships or opportunistic pathogenicity within its hosts. Its specific growth requirements and ecological adaptations suggest that this strain may play a significant role in the complex dynamics of microbial ecosystems associated with host organisms, potentially influencing host health and disease states." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 439334 NZ_CP029332.1 Bac0016891 Streptomyces sp. SM18 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SM18 1736046 NZ_CP029342.1 Bac0016892 Massilia oculi strain CCUG 43427 "Massilia oculi strain CCUG 43427 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolic characteristics. This species belongs to the genus Massilia, which is notable for its role in various environmental processes, particularly in soil and aquatic ecosystems. The aerobic nature of Massilia oculi suggests that it thrives in environments where oxygen is readily available, potentially contributing to the degradation of organic matter and influencing nutrient cycling in its habitat.↵↵As a member of the wider Massilia genus, strain CCUG 43427 may possess enzymatic capabilities that allow it to utilize diverse substrates, although specific metabolic pathways have not been detailed in the current dataset. Its non-sporulating nature implies a reliance on stable environmental conditions for survival, which may affect its distribution and resilience in fluctuating ecosystems. ↵↵Furthermore, the rod shape of Massilia oculi may influence its motility and surface interactions, which are critical factors in colonization and competition within microbial communities. Understanding the ecological roles of Massilia oculi, particularly in relation to its aerobic metabolism and potential interactions with other microorganisms, could provide insights into its contributions to biogeochemical cycles and overall ecosystem health. This highlights the importance of investigating the functional traits of this strain to better elucidate its ecological significance." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia oculi Gram-negative rod aerobic non-spore-forming 945844 NZ_CP029343.1 Bac0016893 Saliniradius amylolyticus strain HMF8227 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Saliniradius Saliniradius amylolyticus 2183582 NZ_CP029347.1 Bac0016894 Azospirillum thermophilum strain CFH 70021 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum thermophilum 2202148 NZ_CP029352.1 Bac0016895 Streptomyces globisporus strain TFH56 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces globisporus 1908 NZ_CP029361.1 Bac0016896 Acinetobacter defluvii strain WCHA30 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter defluvii 1871111 NZ_CP029390.2 Bac0016897 Escherichia coli strain 3385 "Escherichia coli strain 3385 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a common characteristic among many E. coli strains. The optimal growth temperature for strain 3385 is approximately 37.0°C, aligning with the typical body temperature of warm-blooded hosts, suggesting an adaptation to living within host-associated environments.↵↵As a member of the Enterobacteriaceae family, E. coli strain 3385 is primarily associated with the gastrointestinal tracts of various hosts, where it plays a role in the fermentation of carbohydrates and the synthesis of essential metabolites. The ability of this strain to grow in different oxygen conditions allows it to compete effectively for nutrients within the complex microbial communities of the gut.↵↵Understanding the specific traits of E. coli strain 3385 contributes to the broader knowledge of microbial interactions in host environments, particularly regarding nutrient cycling and the maintenance of gut homeostasis. This strain exemplifies the versatility and adaptability of E. coli within host-associated habitats, highlighting its potential role in various symbiotic relationships and its contributions to the overall microbial ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029422.1 Bac0016898 Bradyrhizobium ottawaense strain OO99 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium ottawaense 931866 NZ_CP029425.2 Bac0016899 Bradyrhizobium amphicarpaeae strain 39S1MB Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium amphicarpaeae 1404768 NZ_CP029426.2 Bac0016900 Klebsiella quasipneumoniae strain CAV2018 "Klebsiella quasipneumoniae strain CAV2018 is a Gram-negative, rod-shaped bacterium that is categorized as a facultative anaerobe and associates closely with host environments. This strain shares characteristics with other members of the Klebsiella genus, which are typically found in diverse ecological niches, including the human microbiome and various animal hosts. ↵↵As a facultative anaerobe, K. quasipneumoniae strain CAV2018 is capable of thriving in both aerobic and anaerobic conditions, a trait that may enhance its survival in fluctuating environments within host organisms. Its Gram-negative cell wall structure is indicative of its potential responses to antimicrobial agents, as this characteristic often influences the efficacy of certain antibiotics. ↵↵The host-associated habitat of this strain suggests a possible role in the microbiota of its host, where it may contribute to various physiological processes or compete with other microbial species. The ability of K. quasipneumoniae to adapt to the specific conditions of its host environment could also indicate a level of specialization that may influence its interactions within the microbiome. ↵↵In summary, the ecological insights drawn from the traits of Klebsiella quasipneumoniae strain CAV2018 emphasize its adaptability to host-associated environments, which may reflect broader evolutionary strategies employed by members of the Klebsiella genus in navigating microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae Negative Rod Facultative anaerobe Mesophilic HostAssociated Free living 1463165 NZ_CP029431.1 Bac0016901 Clostridium novyi strain 150557 "Clostridium novyi strain 150557 is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as single cells. As a chemoorganotroph, this microbe derives its energy from organic compounds, which is consistent with its ecological niche as an anaerobe found predominantly in terrestrial environments. ↵↵The anaerobic nature of C. novyi strain 150557 indicates its adaptation to low-oxygen conditions, which are often present in soil and decaying organic matter. This trait suggests that the strain may play a role in nutrient cycling within its habitat, particularly in processes such as decomposition and organic matter breakdown. Understanding the specific interactions and functions of C. novyi strain 150557 in terrestrial ecosystems could provide insights into its ecological importance, particularly in anaerobic environments where it may contribute to microbial community dynamics and soil health." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium novyi Positive Rod Yes 1 Anaerobe Chemoorganotroph Mesophilic Terrestrial Free living Pairs - Singles 1542 NZ_CP029459.1 Bac0016902 Flavobacterium sediminis strain MEBiC07310 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sediminis 2201181 NZ_CP029463.1 Bac0016903 Bacillus pumilus strain ZB201701 "Bacillus pumilus strain ZB201701 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, indicating its adaptation to survive in challenging environmental conditions. As an aerobic organism, this strain requires oxygen for growth, which suggests a potential role in aerobic processes within its terrestrial habitat. ↵↵The ability to form spores is a significant trait of B. pumilus, as it enables the bacterium to withstand extreme conditions such as heat, desiccation, and nutrient deprivation. This characteristic not only facilitates its survival in a variety of terrestrial environments but may also contribute to its ecological resilience and versatility. ↵↵The terrestrial habitat of B. pumilus strain ZB201701 implies its involvement in soil ecosystems, where it may participate in nutrient cycling and contribute to soil health. Its aerobic nature may also indicate a potential role in organic matter decomposition, influencing the microbial community structure and dynamics within its environment. Understanding the traits of this strain could provide insights into its functional capacities in soil ecosystems and its potential applications in biotechnology and environmental management." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 NZ_CP029464.1 Bac0016904 Lactobacillus kullabergensis strain ESL0186 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus kullabergensis anaerobic fresh honey; honey 1218493 NZ_CP029477.1 Bac0016905 Phenylobacterium parvum strain HYN0004 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium parvum NZ_CP029479.1 Bac0016906 Arcticibacterium luteifluviistationis strain SM1504T "Arcticibacterium luteifluviistationis strain SM1504T is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 16.0°C. This psychrotolerant microorganism is particularly adapted to cold environments, which may be reflective of its origin from subglacial or permafrost habitats. ↵↵The Gram-negative cell wall structure of strain SM1504T suggests the presence of an outer membrane containing lipopolysaccharides, which could play a role in its environmental resilience and interactions with other microbial communities. The rod shape of this bacterium may confer advantages in nutrient uptake and motility within its aquatic habitat, potentially facilitating its survival in oligotrophic conditions often found in cold ecosystems.↵↵Given its aerobic nature, Arcticibacterium luteifluviistationis strain SM1504T likely relies on oxygen for its metabolic processes, which may influence its distribution in specific niches where oxygen is available, such as in surface waters or saturated sediments during the melt seasons. The physiological traits of this strain underscore its potential role in biogeochemical cycling in polar regions, where it may contribute to the degradation of organic matter and the cycling of nutrients in cold environments. The adaptation of this microbe to low temperatures may also provide insights into microbial life in extreme conditions, advancing our understanding of microbial ecology in glacial and cryospheric systems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Arcticibacterium Arcticibacterium luteifluviistationis Gram-negative rod non-motile aerobic 16 psychrotolerant 1784714 NZ_CP029480.1 Bac0016907 Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2 "Xanthomonas campestris pv. campestris strain Xcc8004_Xcc2 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, exhibiting optimal growth at 25.0 °C. As an aerobe, this strain requires oxygen for its metabolic processes, which is a characteristic feature of many plant-associated bacteria.↵↵The organism's Gram-negative cell wall structure is indicative of its potential interactions with plant tissues, possibly involving complex mechanisms of adhesion and colonization. The rod shape of Xcc8004_Xcc2 may facilitate movement and biofilm formation, which are critical factors for survival in host-associated habitats. ↵↵Given its optimal growth temperature, Xcc8004_Xcc2 may be well-adapted to temperate climates where host plants are prevalent. Understanding the physiological traits of this strain could provide insights into its role within plant microbiomes, particularly in terms of nutrient cycling and plant health. Additionally, the aerobe nature of this bacterium suggests it may play a role in the aerobic decomposition of organic matter in its ecological niche, contributing to the overall dynamics of microbial communities associated with host plants." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas campestris Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living 340 NZ_CP029484.1 Bac0016908 Deinococcus irradiatisoli strain 17bor-2 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus irradiatisoli 2202254 NZ_CP029494.1 Bac0016909 Lactobacillus helsingborgensis strain ESL0183 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helsingborgensis 1218494 NZ_CP029544.1 Bac0016910 Methylobacterium durans strain 17SD2-17 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium durans 2202825 NZ_CP029550.1 Bac0016911 Methylobacterium radiodurans strain 17Sr1-43 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium radiodurans 2202828 NZ_CP029551.1 Bac0016912 Chromobacterium phragmitis strain IIBBL 274-1 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium phragmitis 2202141 NZ_CP029555.1 Bac0016913 Legionella anisa Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella anisa microaerophile 28082 NZ_CP029565.1 Bac0016914 Actinosynnema pretiosum subsp. pretiosum strain ATCC 31280 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinosynnema Actinosynnema pretiosum 103721 NZ_CP029607.1 Bac0016915 Ligilactobacillus salivarius strain DJ-sa-01 "Ligilactobacillus salivarius strain DJ-sa-01 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is primarily host-associated, indicating a symbiotic or commensal relationship with its host organism. ↵↵As a member of the genus Ligilactobacillus, this strain is part of a group of lactic acid bacteria known for their role in fermentation and potential probiotic properties. The facultative anaerobic nature of L. salivarius strain DJ-sa-01 allows it to thrive in both oxygen-rich and low-oxygen environments, which is advantageous for colonization of various host niches. ↵↵While the specific ecological roles of this strain within its host are not detailed, lactic acid bacteria are generally recognized for their contributions to gut health, including the fermentation of dietary carbohydrates, production of antimicrobial substances, and modulation of the host immune response. The presence of Ligilactobacillus salivarius strain DJ-sa-01 in the microbiota may play a significant role in maintaining a balanced microbial community, potentially influencing the health and well-being of the host. Understanding the characteristics and functions of this strain may provide insights into its applications in health-related fields, particularly in the development of probiotic therapies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 NZ_CP029616.1 Bac0016916 Streptomyces sp. ETH9427 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ETH9427 2211357 NZ_CP029625.1 Bac0016917 Corynebacterium diphtheriae strain BQ11 "Corynebacterium diphtheriae strain BQ11 is a Gram-positive, rod-shaped bacterium that thrives at an optimal temperature of 37.0°C and requires oxygen for growth, classifying it as an aerobic organism. This strain, like other members of the C. diphtheriae species, is found in various habitats, suggesting a degree of environmental versatility. ↵↵The morphology and Gram staining characteristics of strain BQ11 indicate a typical corynebacterial structure, with the potential for forming characteristic arrangements such as palisades or V-shapes during cell division. The aerobic nature of this strain implies that it utilizes oxygen for metabolic processes, which may influence its growth patterns and interactions with other microorganisms in its environment.↵↵Understanding the ecological niches occupied by C. diphtheriae strain BQ11 may provide insight into its role in microbial communities, particularly in environments where aerobic conditions prevail. This adaptability to multiple habitats could contribute to its survival strategies, allowing it to persist in diverse settings. Further investigation into the specific ecological roles and interactions of this strain within its habitats may shed light on its potential influence on local microbial dynamics." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae Positive Rod No 1 1 Aerobe 37 Mesophilic Multiple 1717 NZ_CP029644.1 Bac0016918 Oenococcus sicerae strain UCMA15228 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Oenococcus Oenococcus sicerae 2203724 NZ_CP029684.2 Bac0016919 Escherichia coli strain SD134209 "Escherichia coli strain SD134209 is a Gram-negative, rod-shaped bacterium that commonly exists in host-associated environments, demonstrating a versatile adaptability as a facultative anaerobe. This strain is characterized by its ability to thrive optimally at 37.0°C, a temperature that aligns with the physiological conditions found within mammalian hosts. Observations of its cellular arrangement reveal that E. coli SD134209 can be found in both pairs and singles, which may influence its interactions within the host microbiome and contribute to its ecological role.↵↵As a facultative anaerobe, this strain can utilize both aerobic and anaerobic metabolic pathways, providing it with a competitive advantage in a variety of environments, including the gastrointestinal tracts of mammals. This metabolic flexibility allows E. coli SD134209 to adapt to fluctuating oxygen levels, which is a common characteristic of the gut environment.↵↵The ecological implications of E. coli SD134209 suggest its potential involvement in complex microbial communities within the host, where it may play a role in nutrient cycling and maintaining gut homeostasis. Its ability to thrive in different arrangements and conditions might facilitate interactions with other microbial species, affecting overall gut health and function. Understanding the specific traits of this strain can provide insights into its contributions to host-associated microbiomes and its adaptive strategies in varied ecological niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029690.1 Bac0016920 Enterobacter cloacae complex sp. strain AR_0154 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae complex sp. 2027919 NZ_CP029716.1 Bac0016921 Citrobacter sp. CRE-46 strain AR_0157 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. CRE-46 1703250 NZ_CP029727.1 Bac0016922 Escherichia coli strain AR_0085 "Escherichia coli strain AR_0085 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or single arrangements. This strain thrives optimally at 37.0°C, suggesting its adaptation to host-associated environments, such as the intestines of warm-blooded animals. As a facultative anaerobe, E. coli strain AR_0085 can metabolize in both the presence and absence of oxygen, allowing it to exploit various niches within its host. ↵↵The traits of E. coli strain AR_0085 indicate its potential versatility in microbial metabolism and adaptability to varying oxygen levels, which may enhance its survival in diverse biological environments. Understanding such traits can provide insights into the ecological roles of this strain within the microbiome, potentially influencing nutrient cycling and host interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029741.1 Bac0016923 Escherichia coli strain 2016C-3878 "Escherichia coli strain 2016C-3878 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which reflects the temperature of the human body, suggesting a potential association with warm-blooded hosts. E. coli 2016C-3878 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, allowing it to adapt to varying microenvironments within host-associated habitats.↵↵The host-associated habitat of this strain suggests a role in the microbiota of its host, contributing to various biological functions, including digestion and the synthesis of essential vitamins. The flexibility in oxygen requirements may enable E. coli 2016C-3878 to occupy diverse niches within the gastrointestinal tract, where oxygen levels can fluctuate. Furthermore, the ability to exist in pairs may be advantageous for communication and resource sharing among cells, potentially enhancing its survival and adaptability in complex microbial communities.↵↵Understanding the specific traits of E. coli strain 2016C-3878 provides insight into its potential functional roles in host-associated ecosystems, highlighting the importance of microbial diversity in maintaining host health and homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029747.1 Bac0016924 Lactobacillus amylovorus strain PMRA3 "Lactobacillus amylovorus strain PMRA3 is a Gram-positive, rod-shaped bacterium that typically forms chains and is classified as a nonsporulating anaerobe. This strain is part of a diverse group of lactic acid bacteria known for their role in fermentative processes, and it thrives in multiple habitats, suggesting a versatile ecological niche. ↵↵As a nonsporulating organism, L. amylovorus PMRA3 relies on anaerobic conditions for its growth and metabolic activities, which may include the fermentation of carbohydrates to produce lactic acid. This metabolic pathway is significant not only for its implications in food fermentation but also for its potential role in maintaining gut microbiota balance and promoting digestive health in various organisms.↵↵The ability of L. amylovorus PMRA3 to inhabit multiple environments underscores its adaptability and ecological importance. It may contribute to the fermentation processes in diverse substrates, potentially enhancing the nutritional value of fermented products. Furthermore, the formation of cellular chains may provide advantages in biofilm formation or adherence to surfaces, facilitating survival in competitive microbial ecosystems. Overall, L. amylovorus strain PMRA3 exemplifies the functional diversity of lactic acid bacteria and their contributions to both industrial applications and natural ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains Nonsporulating 1604 NZ_CP029755.1 Bac0016925 Stenotrophomonas maltophilia strain SJTL3 "Stenotrophomonas maltophilia strain SJTL3 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This strain is part of a diverse group of microorganisms that inhabit multiple environments, suggesting its adaptability and potential versatility in various ecological niches. As an aerobe, S. maltophilia strain SJTL3 requires oxygen for growth, which may influence its distribution in environments where oxygen is readily available, such as soil, water, and even within certain human-associated microbiomes.↵↵The presence of this strain in multiple habitats highlights its ecological significance and the potential for interactions with other microbial communities. Its adaptability to different environments could facilitate biogeochemical cycling processes, particularly in nitrogen and carbon cycling, where such bacteria often play crucial roles. Furthermore, understanding the ecological dynamics of S. maltophilia strain SJTL3 may provide insights into its role in environmental microbiology and its interactions with both biotic and abiotic factors in its habitats. This adaptability also underscores the importance of studying strain-specific traits to better understand the ecological roles of S. maltophilia in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 NZ_CP029773.1 Bac0016926 Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus 1768108 NZ_CP029774.1 Bac0016927 Streptomyces actuosus strain ATCC 25421 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces actuosus 1885 NZ_CP029788.1 Bac0016928 Azospirillum ramasamyi strain M2T2B2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum ramasamyi 682998 NZ_CP029831.1 Bac0016929 Marilutibacter maris strain HZ9B Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Marilutibacter Marilutibacter maris 1605891 NZ_CP029843.1 Bac0016930 Escherichia coli strain 51008369SK1 "Escherichia coli strain 51008369SK1 is a Gram-negative, rod-shaped bacterium that predominantly exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the typical temperature of the mammalian host environment. As a facultative anaerobe, E. coli strain 51008369SK1 can grow in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within its host-associated habitat. ↵↵The host-associated nature of this strain suggests a potential role in the microbiota of a specific host organism, where it may contribute to various physiological processes. Given its characteristics, E. coli strain 51008369SK1 may play a role in nutrient metabolism or contribute to the overall homeostasis of its host environment. Understanding the specific interactions of this strain within its ecological niche could provide insights into its contributions to host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP029973.1 Bac0016931 Salmonella enterica subsp. salamae serovar 56:b:[1 "Salmonella enterica subsp. salamae serovar 56:b:[1] is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the ability to form chains or exist as single cells. This organism optimally thrives at a temperature of 37.0°C, which aligns with its adaptation to host-associated habitats. As a chemoorganotroph, it relies on organic compounds as its energy source, indicating a potential dependence on the metabolic processes of its host organism.↵↵The microaerophilic nature of S. enterica subsp. salamae serovar 56:b:[1] suggests that it requires low levels of oxygen for growth, which may influence its ecological niche and interactions within host environments. The ability to form chains could play a role in its colonization strategies or biofilm formation, potentially impacting its survival and transmission dynamics within host populations. Understanding the specific ecological roles and interactions of this serovar in its host environment could provide insights into its adaptability and the broader implications for public health and microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2577858 NZ_CP029997.1 Bac0016932 Bradymonas sediminis strain FA350 Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis 1548548 NZ_CP030032.1 Bac0016933 Echinicola strongylocentroti strain MEBiC08714 "Echinicola strongylocentroti strain MEBiC08714 is a Gram-negative, rod-shaped bacterium that exhibits heterotrophic metabolism and requires aerobic conditions for growth, with an optimal growth temperature of 25.0 °C. This strain is characterized by its capacity to utilize organic compounds as an energy source, which is typical for many members of the Echinicola genus. ↵↵The Gram-negative cell wall structure of E. strongylocentroti suggests a potential for diverse interactions with its environment, including possible roles in nutrient cycling or symbiotic relationships. Its aerobic nature indicates a preference for oxygen-rich environments, which may limit its habitat to specific ecological niches where oxygen is readily available. The optimal growth temperature of 25.0 °C aligns with the typical thermal range for mesophilic organisms, indicating that this strain might thrive in moderate climates or environments that are not subject to extreme temperature fluctuations.↵↵Understanding the metabolic capabilities and growth conditions of Echinicola strongylocentroti strain MEBiC08714 could provide insights into its ecological role, particularly in marine or freshwater ecosystems where such heterotrophic bacteria contribute to the decomposition of organic matter. This could have implications for the broader microbial community dynamics and biogeochemical processes within its native habitats." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Echinicola Echinicola strongylocentroti Gram-negative rod aerobic 25 heterotroph mesophilic 1795355 NZ_CP030041.1 Bac0016934 Enterococcus faecalis strain C25 "Enterococcus faecalis strain C25 is a Gram-positive, nonsporulating coccus that thrives at an optimal temperature of 37.0°C. This strain is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. Enterococcus faecalis is known for its facultative anaerobic capabilities, allowing it to grow in both aerobic and anaerobic environments, which contributes to its adaptability in various habitats.↵↵The ability of Enterococcus faecalis strain C25 to inhabit multiple ecological niches underscores its versatility and resilience in different conditions. This microbe can be found in diverse environments, including the gastrointestinal tracts of humans and animals, as well as in soil and water. The facultative anaerobic nature allows it to thrive in environments where oxygen availability fluctuates, enhancing its survival in dynamic ecological contexts.↵↵Given its broad habitat range and metabolic flexibility, Enterococcus faecalis strain C25 may play a significant role in nutrient cycling and microbial interactions within its ecosystems. Its presence in the gut microbiome suggests a potential involvement in maintaining the balance of microbial communities, though further investigation would be necessary to fully elucidate its ecological roles." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_CP030042.1 Bac0016935 Halorubrum sp. PV6 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. PV6 634157 NZ_CP030065.1 Bac0016936 Polynucleobacter paneuropaeus strain MG-25-Pas1-D2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter paneuropaeus 2527775 NZ_CP030085.1 Bac0016937 Polynucleobacter paneuropaeus strain UB-Kaiv-W7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter paneuropaeus 2527775 NZ_CP030088.1 Bac0016938 Massilia sp. YMA4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia sp. YMA4 1593482 NZ_CP030092.1 Bac0016939 Flagellimonas maritima strain HME9304 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas maritima 1383885 NZ_CP030104.1 Bac0016940 Brevibacillus brevis strain DZQ7 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus brevis 1393 NZ_CP030117.1 Bac0016941 Salmonella enterica strain SA20094620 "Salmonella enterica strain SA20094620 is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as single cells. This strain exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels. It is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. The optimal growth temperature for SA20094620 is 37.0°C, which aligns with the typical physiological conditions found in host organisms.↵↵As a host-associated microbe, Salmonella enterica strain SA20094620 likely inhabits specific niches within its host, potentially influencing host metabolism or immune responses. The strain's adaptation to microaerophilic conditions suggests it may exploit unique environments within its host, such as the gastrointestinal tract, where oxygen concentrations can be lower than in the external environment. This adaptation may confer a competitive advantage in colonizing and persisting within host tissues, highlighting the intricate relationship between microbial physiology and ecological niche specialization. Understanding these traits can provide insights into the role of this strain within its host and its potential interactions with other microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NZ_CP030186.1 Bac0016942 Salmonella enterica strain SA20021456 "Salmonella enterica strain SA20021456 is a Gram-negative bacterium characterized by its spirilla shape and arrangement either in chains or as singles. This strain exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels, which is typical for many members of the genus Salmonella. Its optimal growth temperature is 37.0°C, aligning with the typical physiological conditions found in host organisms.↵↵As a chemoorganotroph, S. enterica strain SA20021456 utilizes organic compounds as its energy source, indicating its potential adaptability to various nutrient-rich environments associated with hosts. The designation ""host-associated"" suggests a close relationship with living organisms, which may influence its survival strategies and metabolic pathways.↵↵The unique spiral morphology of this strain may confer advantages in motility and colonization within host tissues, potentially facilitating interactions with the host's immune response. Understanding the specific traits of S. enterica strain SA20021456 enhances our knowledge of its ecological niche and metabolic capabilities, which may be crucial for future studies on host-microbe interactions and the role of this strain in its specific environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NZ_CP030219.1 Bac0016943 Moraxella bovis strain Epp63 (300) "Moraxella bovis strain Epp63 (300) is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is part of the Moraxellaceae family and exhibits features typical of the genus Moraxella, including the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. As a Gram-negative organism, Moraxella bovis strain Epp63 (300) can be influenced by environmental factors that affect membrane integrity and permeability, which may play a role in its adaptability to various habitats.↵↵While specific pathogenicity traits are not provided, the Gram-negative nature of Moraxella bovis suggests potential interactions with host immune systems and environmental stresses. The ability of Gram-negative bacteria to evade host defenses through their outer membrane structure could be relevant in understanding their behavior in different ecological niches.↵↵An intriguing aspect of Moraxella bovis strain Epp63 (300) is its potential role in the microbiome of specific environments, which may impact its interactions with other microbial species and its adaptability to certain ecological conditions. The metabolic capabilities and environmental resilience of this strain could be further explored to elucidate its role within microbial communities, particularly in relation to nutrient cycling and symbiotic relationships in its natural habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella bovis negative 476 NZ_CP030242.1 Bac0016944 Rhodobiaceae bacterium strain SMS8 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhodobiaceae Rhodobiaceae bacterium 2026785 NZ_CP030277.1 Bac0016945 Streptomyces sp. ICC1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ICC1 2099583 NZ_CP030287.1 Bac0016946 Rhizobium leguminosarum strain ATCC 14479 "Rhizobium leguminosarum strain ATCC 14479 is a Gram-negative, rod-shaped bacterium that occurs as single cells and is classified as a nonsporulating organism. As a chemoheterotroph, this strain derives its energy from organic compounds, which is typical for many soil-dwelling bacteria. The strain is strictly aerobic, requiring oxygen for its metabolic processes, which positions it well within the soil ecosystem where oxygen availability can vary.↵↵This strain is notably associated with legumes, where it plays a crucial role in nitrogen fixation, an essential process that enhances soil fertility. While specific interactions with host plants were not provided, the general capability of Rhizobium species to form symbiotic relationships with legumes suggests that R. leguminosarum strain ATCC 14479 may contribute to nutrient cycling in its habitat. Understanding the biological characteristics of this strain contributes to insights into soil health and the potential for sustainable agricultural practices. The presence of such bacteria in soil ecosystems underscores the importance of microbial communities in promoting plant growth and maintaining ecological balance." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP030761.1 Bac0016947 Acidisarcina polymorpha strain SBC82 Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidisarcina Acidisarcina polymorpha 2211140 NZ_CP030840.1 Bac0016948 Pandoraea sp. XY-2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea sp. XY-2 2518599 NZ_CP030849.1 Bac0016949 Runella rosea strain HYN0085 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Runella Runella rosea 2259595 NZ_CP030851.1 Bac0016950 Streptomyces globosus strain LZH-48 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces globosus 68209 NZ_CP030863.1 Bac0016951 Enterococcus gilvus strain CR1 "Enterococcus gilvus strain CR1 is a nonsporulating, cocci-shaped bacterium classified within the genus Enterococcus. This strain is a chemoheterotroph, utilizing organic compounds as its primary energy source, which aligns with its role in a gut environment. Enterococcus gilvus strain CR1 thrives in anaerobic conditions, reflecting its adaptation to the host gut, where oxygen levels are minimal.↵↵The unique combination of traits exhibited by Enterococcus gilvus strain CR1, particularly its anaerobic metabolism and chemoheterotrophic lifestyle, suggests a specialized role in the gut microbiome. This strain may contribute to the fermentation processes that occur within the intestinal ecosystem, potentially influencing the overall metabolic activity and microbial diversity of the gut environment. Given its habitat and metabolic capabilities, Enterococcus gilvus strain CR1 may play a significant role in the breakdown of dietary substrates, thereby supporting the nutritional needs of the host and maintaining gut health. Further research into this strain could provide insights into its interactions within the microbiome and its contributions to gut homeostasis." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gilvus Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Host gut Nonsporulating 160453 NZ_CP030934.1 Bac0016952 Latilactobacillus curvatus strain TMW 1.1928 "Latilactobacillus curvatus strain TMW 1.1928 is a Gram-positive, rod-shaped bacterium known for its versatility as a facultative anaerobe, thriving in various fermented environments. This strain has been isolated from a range of habitats, including carrots pickled with rice bran and salt, fermented dairy products, kimchi, meat, and other plant-based items such as radishes processed in a similar manner.↵↵The ability of L. curvatus strain TMW 1.1928 to grow in both aerobic and anaerobic conditions allows it to adapt to diverse fermentation processes, contributing to the flavor and preservation of various foods. Its presence in traditional fermented foods highlights its potential role in enhancing the organoleptic properties of these products, as well as its importance in food microbiology.↵↵Furthermore, the strain's adaptability to different substrates, including both plant and animal sources, suggests a significant ecological role in the fermentation microbiota, where it may contribute to the development of complex microbial communities. This adaptability could also imply a capability for biotechnological applications in food production and preservation, potentially influencing the development of novel fermented products." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus curvatus Positive Rod Yes Facultative anaerobe carrots pickled with rice bran and salt; fermented dairy; fermented products; kimchi; meat; plant products; radish pickled with rice bran and salt 28038 NZ_CP031003.1 Bac0016953 Moorella thermoacetica strain 39073-HH Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella thermoacetica thermophilic 1525 NZ_CP031054.1 Bac0016954 Acidipropionibacterium acidipropionici strain WGS7 "Acidipropionibacterium acidipropionici strain WGS7 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments. This microbe is capable of utilizing various organic compounds as energy sources, which aligns with its classification as a chemoheterotroph. Its adaptability to multiple habitats suggests a versatile ecological role, potentially allowing it to inhabit diverse anaerobic niches, such as those found in fermented foods, the gastrointestinal tracts of animals, or other organic-rich environments.↵↵The anaerobic requirement of strain WGS7 indicates that it may contribute to the fermentation processes in its native habitats, which could influence the dynamics of microbial communities and the degradation of organic matter. The ability to thrive in such conditions reinforces the importance of Acidipropionibacterium acidipropionici in various biotechnological applications, such as the production of propionic acid and other fermentation-derived products. Furthermore, understanding the ecological roles of this strain could provide insights into its potential interactions with other microorganisms and its contributions to the overall health of anaerobic ecosystems." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Acidipropionibacterium Acidipropionibacterium acidipropionici positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 1748 NZ_CP031057.1 Bac0016955 Paracoccus yeei strain CCUG 32053 "Paracoccus yeei strain CCUG 32053 is a Gram-negative, nonsporulating coccus that exhibits chemoheterotrophic metabolism and is classified as an aerobic organism. This strain is isolated from soil environments, indicating its potential role in soil microbiology and nutrient cycling.↵↵As a Gram-negative bacterium, P. yeei possesses a distinctive cell wall structure characterized by a thin peptidoglycan layer and an outer membrane that may contribute to its adaptation to various environmental conditions. Its coccal shape and nonsporulating nature suggest that it relies on other mechanisms for survival and reproduction in its soil habitat, rather than forming spores.↵↵The chemoheterotrophic lifestyle of P. yeei indicates that it derives energy through the oxidation of organic compounds, which is a common trait among many soil-dwelling microbes that contribute to the decomposition of organic matter. This metabolic strategy positions P. yeei as a potential participant in the complex interplay of microbial communities within soil ecosystems, where it may influence nutrient availability and soil health.↵↵Overall, the ecological role of Paracoccus yeei strain CCUG 32053 in soil environments highlights its importance in sustaining the microbial diversity and functional capacities of these ecosystems, as it engages in the essential processes of organic matter degradation and nutrient cycling." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus yeei Negative Cocci No 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 147645 NZ_CP031079.1 Bac0016956 Salicibibacter kimchii strain NKC1-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salicibibacter Salicibibacter kimchii 2099786 NZ_CP031092.1 Bac0016957 Hydrocarboniclastica marina strain soil36-7 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Hydrocarboniclastica Hydrocarboniclastica marina 2259620 NZ_CP031093.1 Bac0016958 Providencia huaxiensis strain WCHPr000369 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia huaxiensis 2027290 NZ_CP031118.1 Bac0016959 Escherichia coli strain CFSAN064035 "Escherichia coli strain CFSAN064035 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of warm-blooded hosts, indicating its potential adaptation to a host-associated habitat. As a facultative anaerobe, E. coli CFSAN064035 is capable of utilizing oxygen for respiration when available, but it can also grow in anaerobic conditions, demonstrating metabolic flexibility that may enhance its survival in varied environments.↵↵The host-associated habitat of this strain suggests that it may play a role in the microbiota of its host, potentially contributing to nutrient cycling or digestive processes. The dual capacity to grow under both aerobic and anaerobic conditions could afford this strain an ecological advantage, allowing it to occupy diverse niches within the host's gastrointestinal tract. Furthermore, the arrangement of cells in pairs or as singles may influence its interactions with other microbial species and the host's immune response, although specific interactions remain to be elucidated. Understanding the traits of E. coli strain CFSAN064035 in the context of its ecological role could provide insights into its function within host-associated microbiomes and its potential impact on host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP031137.1 Bac0016960 Haloplanus rubicundus strain CBA1112 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus rubicundus 1547898 NZ_CP031148.1 Bac0016961 Haloplanus rubicundus strain CBA1113 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus rubicundus 1547898 NZ_CP031150.1 Bac0016962 Metallosphaera prunae strain Ron 12/II "Metallosphaera prunae strain Ron 12/II is a Gram-negative, cocci-shaped bacterium that exists as single cells and thrives optimally at a temperature of 70.0 °C. This strain is classified as an aerobe, indicating its reliance on oxygen for metabolic processes. As a member of a specialized habitat, M. prunae Ron 12/II likely occupies extreme environments, which may include hot springs or other thermophilic niches where high temperatures and aerobic conditions prevail.↵↵The morphological characteristic of being cocci, along with its Gram-negative staining, suggests a specific structural composition of the cell wall, which is typically thinner than that of Gram-positive bacteria. The unique combination of traits, including high-temperature tolerance and aerobic metabolism, may confer advantages in competitive environments where fewer organisms can survive. ↵↵Further investigation into the metabolic pathways and enzymatic activities of M. prunae Ron 12/II could provide insights into its role in biogeochemical cycles within its specialized habitat. Understanding its physiological adaptations may also reveal potential biotechnological applications, especially in processes that require high-temperature conditions, such as bioleaching or the production of thermostable enzymes." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula Negative Cocci No 1 1 Aerobe 70 Thermophilic Specialized Free living Singles 43687 NZ_CP031156.1 Bac0016963 Deinococcus wulumuqiensis strain NEB 479 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis 980427 NZ_CP031158.1 Bac0016964 Euzebya pacifica strain DY32-46 Bacillati Actinomycetota Nitriliruptoria Euzebyales Euzebyaceae Euzebya Euzebya pacifica 1608957 NZ_CP031166.1 Bac0016965 Stenotrophomonas sp. ASS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. ASS1 2282124 NZ_CP031167.1 Bac0016966 Levilactobacillus brevis strain UCCLBBS124 "Levilactobacillus brevis strain UCCLBBS124 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or as single cells. This strain is notable for its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It optimally grows at a temperature of 25.0°C, which may suggest its adaptation to moderate thermal conditions.↵↵The habitat of Levilactobacillus brevis strain UCCLBBS124 spans multiple environments, indicating its versatility and potential ecological significance. The ability to exist in various habitats may facilitate interactions with diverse microbial communities, possibly contributing to fermentation processes or influencing the microbiota of its surroundings. ↵↵Understanding the traits of Levilactobacillus brevis strain UCCLBBS124 offers insights into its ecological role, particularly in environments where temperature and oxygen availability fluctuate. Its facultative anaerobic nature may enable it to occupy niches that are less hospitable to strictly anaerobic or aerobic microbes, providing a competitive advantage in diverse ecosystems. This adaptability might also reflect its potential utility in biotechnological applications, such as food fermentation or probiotic development, where the ability to thrive under varying conditions is essential." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031169.1 Bac0016967 Levilactobacillus brevis strain UCCLB556 "Levilactobacillus brevis strain UCCLB556 is a Gram-positive, rod-shaped bacterium that can be found in various habitats, displaying a unique ability to grow in chains as well as in single-cell arrangements. This strain thrives optimally at a temperature of 25.0°C and exhibits facultative anaerobic characteristics, allowing it to adapt to both aerobic and anaerobic environments. ↵↵The versatility in its habitat suggests that Levilactobacillus brevis strain UCCLB556 may play a significant role in diverse ecological niches, potentially contributing to microbial communities involved in fermentation processes or organic matter decomposition. Its capacity to grow in multiple environments implies an ecological resilience that could be advantageous for its survival and functionality in fluctuating conditions. ↵↵Overall, the traits of L. brevis strain UCCLB556 highlight its adaptability and potential significance within various microbial ecosystems, underscoring the importance of understanding its metabolic capabilities in relation to its ecological roles." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031176.1 Bac0016968 Levilactobacillus brevis strain UCCLB95 "Levilactobacillus brevis strain UCCLB95 is a Gram-positive, rod-shaped bacterium that typically forms chains or exists as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 25.0 °C, indicating a preference for moderate thermal conditions.↵↵The habitat of L. brevis strain UCCLB95 is characterized as diverse, suggesting adaptability to various ecological niches. Such versatility may facilitate its role in fermentation processes, particularly in food production, where it could contribute to flavor development and preservation. The ability to grow in multiple environments alongside its facultative anaerobic nature highlights its potential utility in biotechnological applications, including the production of probiotics and organic acids. ↵↵Overall, L. brevis strain UCCLB95 exemplifies the significant ecological flexibility exhibited by many lactic acid bacteria, positioning it as a noteworthy candidate for further research in microbial fermentation and ecological interactions within its habitats." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031182.1 Bac0016969 Levilactobacillus brevis strain SA-C12 "Levilactobacillus brevis strain SA-C12 is a Gram-positive, rod-shaped bacterium that can form chains or exist as single cells. This strain demonstrates a facultative anaerobic metabolism, enabling it to thrive in both aerobic and anaerobic environments. Optimal growth conditions for L. brevis SA-C12 are observed at a temperature of 25.0°C, suggesting a preference for moderate temperatures commonly found in various natural and artificial habitats.↵↵The ability to adapt to multiple habitats indicates that L. brevis SA-C12 may play versatile roles in different ecological niches, potentially contributing to fermentation processes and influencing microbial communities. This adaptability could also reflect its evolutionary strategies for survival in fluctuating environmental conditions. Understanding the specific ecological roles and interactions of L. brevis SA-C12 within its habitats may provide insights into its functional contributions to microbial diversity and ecosystem dynamics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031185.1 Bac0016970 Humibacter sp. BT305 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Humibacter Humibacter sp. BT305 2282656 NZ_CP031192.1 Bac0016971 Streptomyces paludis strain GSSD-12 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces paludis 2282738 NZ_CP031194.1 Bac0016972 Levilactobacillus brevis strain UCCLBBS449 "Levilactobacillus brevis strain UCCLBBS449 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or as singles. This strain exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments, which reflects its adaptability to various habitats. The optimal growth temperature for L. brevis strain UCCLBBS449 is 25.0°C, indicating a preference for moderate temperatures that could be associated with specific ecological niches. ↵↵The ability of L. brevis to grow in diverse habitats suggests its potential role in various fermentation processes, particularly in food production and preservation, where it may contribute to flavor development and microbial stability. This adaptability also raises interesting questions about its interactions with other microbial communities in natural and engineered environments. The characteristics of L. brevis strain UCCLBBS449, particularly its chain formation and oxygen utilization, may provide insights into its ecological roles, such as its potential involvement in the fermentation dynamics of plant-based substrates, which could be crucial for sustainable agricultural practices." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031198.1 Bac0016973 Levilactobacillus brevis strain UCCLB521 "Levilactobacillus brevis strain UCCLB521 is a Gram-positive, rod-shaped bacterium that commonly exhibits growth in chains or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It exhibits optimal growth at a temperature of 25.0 °C, suggesting a preference for moderate thermal conditions typical of various ecological niches.↵↵The habitat of L. brevis strain UCCLB521 is noted to be diverse, which may reflect its adaptability and potential roles in different microbial communities. The ability to form chains could facilitate interactions within these communities, potentially influencing both nutrient cycling and microbial dynamics.↵↵This strain is of particular interest within the context of fermentation processes, where its metabolic capabilities may contribute to the production of lactic acid and other metabolites. The versatility in oxygen requirement also suggests possible applications in both aerobic and anaerobic fermentation systems. ↵↵In conclusion, the adaptability of Levilactobacillus brevis strain UCCLB521 to multiple habitats and varying oxygen levels highlights its potential ecological role in diverse microbial ecosystems, where it may contribute to the stability and functionality of those communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP031208.1 Bac0016974 Malaciobacter mytili LMG 24559 "Malaciobacter mytili LMG 24559 is a Gram-negative, rod-shaped bacterium that does not form spores and exhibits optimal growth at a temperature of 29.0°C. This microbe is characterized by its distinct morphological and physiological properties, which align with those commonly found in the family of bacteria it belongs to. The Gram-negative nature of M. mytili suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms.↵↵The non-spore-forming trait of M. mytili indicates that it likely relies on other survival strategies in response to environmental stresses, such as the production of protective metabolites or biofilm formation. The optimal growth temperature of 29.0°C suggests a preference for moderately warm environments, which could correlate with its ecological niche, potentially in marine or estuarine settings where similar temperature conditions prevail.↵↵This bacterium's characteristics may allow it to play a role in nutrient cycling within its habitat, particularly in the degradation of organic materials or in symbiotic relationships with other marine organisms. Understanding the traits of Malaciobacter mytili can provide insights into its ecological functions and interactions within microbial communities, highlighting the importance of temperature adaptation and metabolic capabilities in shaping microbial diversity in aquatic ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter mytili Gram-negative rod 29 mesophilic non-spore-forming 1032238 NZ_CP031219.1 Bac0016975 Wolbachia pipientis wAlbB Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia pipientis 1116230 NZ_CP031221.1 Bac0016976 Aquirhabdus parva strain HYN0046 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Aquirhabdus Aquirhabdus parva 2283318 NZ_CP031222.1 Bac0016977 Ornithinimicrobium avium strain AMA3305 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium avium 2283195 NZ_CP031229.1 Bac0016978 Escherichia coli strain EC17GD31 "Escherichia coli strain EC17GD31 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns closely with the body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, EC17GD31 is capable of growth in both aerobic and anaerobic conditions, allowing it to exploit various niches within the host environment.↵↵The capacity of EC17GD31 to inhabit the gastrointestinal tract of hosts suggests that it may play a role in nutrient absorption or gut microbiota balance. While specific functional traits of this strain have not been provided, its general characteristics align with those of E. coli strains that are known to contribute to the digestive processes of their hosts. The adaptability of EC17GD31 to varying oxygen levels may also confer a competitive advantage in dynamic environments, such as those encountered in the intestines.↵↵Overall, the unique combination of traits exhibited by Escherichia coli strain EC17GD31 reflects its potential significance in host-associated ecosystems, possibly influencing host health and microbiome diversity. Further investigation into this strain could provide deeper insights into its ecological roles and interactions within the microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP031293.1 Bac0016979 Natrinema thermotolerans strain A29 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema thermotolerans 121872 NZ_CP031299.1 Bac0016980 Natronorubrum bangense strain JCM 10635 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum bangense 61858 NZ_CP031306.1 Bac0016981 Halapricum salinum strain CBA1105 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halapricum Halapricum salinum 1457250 NZ_CP031310.1 Bac0016982 Streptomyces armeniacus strain ATCC 15676 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces armeniacus 83291 NZ_CP031320.1 Bac0016983 Crenobacter cavernae strain K1W11S-77 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Crenobacter Crenobacter cavernae 2290923 NZ_CP031337.1 Bac0016984 Spiroplasma alleghenense strain PLHS-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma alleghenense microaerophile 216931 NZ_CP031376.1 Bac0016985 Hylemonella gracilis strain NS1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hylemonella Hylemonella gracilis 80880 NZ_CP031395.1 Bac0016986 Pseudolabrys taiwanensis strain CC-BB4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Pseudolabrys Pseudolabrys taiwanensis aerobic 331696 NZ_CP031417.1 Bac0016987 Microbacterium lemovicicum strain Viu22 "Microbacterium lemovicicum strain Viu22 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, which suggests its potential preference for mesophilic environments. As a member of the genus Microbacterium, it shares common traits associated with this group, including its robust cell wall structure and metabolic versatility.↵↵The aerobic requirement of strain Viu22 indicates that it plays a role in environments that are rich in oxygen, which could influence its ecological interactions and functional contributions within microbial communities. The ability to thrive at a specific temperature point may suggest adaptations that enable this strain to persist in environments with fluctuating thermal conditions, such as soil or decaying organic matter.↵↵Given the traits of Microbacterium lemovicicum strain Viu22, it may have a unique ecological niche where it contributes to the degradation of organic materials or the cycling of nutrients in aerobic conditions. Further investigation into its metabolic capabilities and ecological roles could shed light on its potential applications in bioremediation or agriculture, where aerobic microbial processes are crucial for soil health and sustainability." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium lemovicicum Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1072463 NZ_CP031423.1 Bac0016988 Bacillus mobilis strain ML-A2C4 "Bacillus mobilis strain ML-A2C4 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its adaptability to varying oxygen conditions as a facultative aerobe/anaerobe. This strain exhibits optimal growth at a temperature of 29.0°C, highlighting its potential suitability for environments that maintain moderate thermal conditions. ↵↵The Gram-positive nature of Bacillus mobilis strain ML-A2C4 suggests a robust cell wall structure, which may confer advantages in survival under challenging environmental conditions, including desiccation and nutrient limitation. Its spore-forming capability indicates a strategic advantage for persistence, allowing the bacterium to withstand unfavorable conditions by entering a dormant state. ↵↵The facultative lifestyle of Bacillus mobilis strain ML-A2C4 may enable it to thrive in diverse ecological niches where oxygen availability fluctuates, suggesting a versatile metabolic repertoire that allows it to utilize organic substrates in both aerobic and anaerobic conditions. This adaptability positions Bacillus mobilis strain ML-A2C4 as a potentially valuable organism in biotechnological applications, particularly in processes that require biological degradation of organic materials in varying environmental conditions. Further studies could elucidate its role in nutrient cycling and its interactions within microbial communities, contributing to a greater understanding of its ecological significance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mobilis Gram-positive rod motile facultative aerobe/anaerobe 29 mesophilic spore-forming 2026190 NZ_CP031443.1 Bac0016989 Pseudomonas fluorescens strain SIK_W1 "Pseudomonas fluorescens strain SIK_W1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, relying on organic compounds as its energy source, and it thrives in aerobic conditions, necessitating the presence of oxygen for optimal growth. The optimal growth temperature for strain SIK_W1 is 25.0°C, indicating a preference for moderate environmental conditions.↵↵Pseudomonas fluorescens species are known for their metabolic versatility, which allows them to inhabit a wide range of environments. This adaptability suggests that strain SIK_W1 may be found in diverse habitats, likely contributing to its ecological role in various ecosystems. The ability of this strain to utilize multiple organic substrates enhances its potential utility in bioremediation processes, where it may play a role in the degradation of pollutants.↵↵Additionally, the isolation of Pseudomonas fluorescens strains from different environments has implications for understanding microbial community dynamics and nutrient cycling. The presence of strain SIK_W1 in various habitats may indicate its capacity to adapt to different ecological niches, making it a subject of interest for further studies on microbial ecology and environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 1869229 NZ_CP031450.1 Bac0016990 Paraburkholderia caffeinilytica strain CF1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caffeinilytica 1761016 NZ_CP031466.1 Bac0016991 Bombilactobacillus bombi strain BI-2.5 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bombilactobacillus Bombilactobacillus bombi 1303590 NZ_CP031513.1 Bac0016992 Escherichia coli strain cq9 "Escherichia coli strain cq9 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, emphasizing its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain cq9 possesses the metabolic flexibility to survive in both aerobic and anaerobic environments, enabling it to exploit various niches within the host.↵↵The structural characteristics of E. coli strain cq9, such as its Gram-negative cell wall composition, suggest a robust resilience to certain environmental stresses, which may be advantageous in the complex microenvironments of the host. The arrangement of cells in pairs or singles may also influence its interactions with host tissues and other microbial communities.↵↵Understanding the physiological traits of E. coli strain cq9 can provide insights into its potential roles within the host's microbiome, particularly regarding nutrient cycling and interactions with the immune system. This strain exemplifies the diverse metabolic capabilities of E. coli, illustrating the importance of specific environmental conditions in shaping microbial behavior and community dynamics within host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP031546.1 Bac0016993 Helicobacter pylori strain GD63 "Helicobacter pylori strain GD63 is a Gram-negative, microaerophilic spirillum that typically exists in a single-cell arrangement and thrives at an optimal temperature of 37.0 °C. This strain is primarily host-associated, indicating its adaptation to life within a specific biological host environment. ↵↵H. pylori is known for its unique spiral shape, which may contribute to its motility and colonization capabilities within the gastric mucosa of its host. The microaerophilic nature of strain GD63 suggests that it requires reduced levels of oxygen for optimal growth, reflecting its adaptation to the low-oxygen conditions typically found in the stomach. ↵↵Understanding the growth conditions and morphological characteristics of H. pylori strain GD63 can provide insights into the mechanisms by which this organism interacts with its host, particularly in relation to its survival in the acidic gastric environment and its potential roles in gastrointestinal health. Further research could elucidate the ecological dynamics of this strain in relation to the host's microbiome and the implications for gastrointestinal diseases." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP031558.1 Bac0016994 Dickeya dianthicola strain ME23 "Dickeya dianthicola strain ME23 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic growth characteristics. This strain thrives optimally at a temperature of 37.0°C, suggesting a preference for moderate to warm environments, which may align with conditions found in certain host organisms or specific ecological niches. As a member of the Dickeya genus, which is known for its association with plant environments, strain ME23's metabolic versatility allows it to adapt to varying oxygen availability, potentially influencing its role in diverse biological interactions.↵↵The rod shape of Dickeya dianthicola strain ME23 is characteristic of many bacteria within its lineage, contributing to its motility and ability to colonize different habitats. Its Gram-negative status indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may provide insights into its environmental resilience and interactions with other microbial communities.↵↵Given its facultative lifestyle, Dickeya dianthicola strain ME23 may play a role in nutrient cycling and organic matter decomposition within its ecological context. Its ability to thrive under varying oxygen conditions suggests that it could contribute to the dynamics of microbial communities in both aerobic and anaerobic environments, highlighting its potential significance in soil health and plant growth promotion." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya dianthicola Gram-negative rod facultative aerobe/anaerobe 37 mesophilic 204039 NZ_CP031560.1 Bac0016995 Enterobacter hormaechei strain 2013_1a "Enterobacter hormaechei strain 2013_1a is a Gram-negative bacterium categorized within the Enterobacter genus, which is known for its diverse metabolic capabilities. This strain is facultative anaerobic, allowing it to thrive in both aerobic and anaerobic environments, a trait that enhances its adaptability to varying host-associated habitats. Such adaptability is particularly relevant given its association with biological hosts, which may provide diverse ecological niches conducive to its growth and survival.↵↵The host-associated habitat of Enterobacter hormaechei strain 2013_1a suggests a potential role in the microbiota of various organisms, although the specific host species and interactions remain to be characterized. As a member of the Enterobacter genus, this strain may engage in complex interactions with its environment, potentially influencing the microbial community structure within its host. The facultative anaerobic nature of this strain implies that it could play a role in metabolic processes that are essential for maintaining the host's homeostasis, particularly under conditions where oxygen levels fluctuate.↵↵Overall, the traits of Enterobacter hormaechei strain 2013_1a highlight its ecological versatility and suggest that it may contribute to the dynamic balance of microbial life within its host, possibly influencing health and disease states through its metabolic activities. Further investigation into its specific roles and interactions within host ecosystems may provide insights into its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 NZ_CP031565.1 Bac0016996 Enterobacter hormaechei strain N1 "Enterobacter hormaechei strain N1 is a Gram-negative bacterium that exhibits facultative anaerobic metabolism, enabling it to thrive in both aerobic and anaerobic environments. This strain is host-associated, indicating its presence in or on living organisms, which may suggest a potential role in the microbiota of various hosts. As a member of the Enterobacter genus, E. hormaechei strains are often studied for their metabolic versatility and adaptability in diverse habitats, particularly in association with host organisms.↵↵The facultative anaerobic nature of Enterobacter hormaechei strain N1 allows it to utilize oxygen when available, but it can also ferment substrates in the absence of oxygen, a trait that enhances its survival in fluctuating environmental conditions, typical of host-associated niches. This metabolic flexibility may confer advantages in colonization, enabling the bacterium to persist in different microenvironments within the host.↵↵Furthermore, the host-associated habitat suggests that Enterobacter hormaechei strain N1 may play a role in the microbial community dynamics of its host, potentially influencing nutrient cycling, immune responses, or interactions with other microbial species. Understanding the ecological role of this strain within the host-associated microbiome could provide insights into its contributions to host health and its interactions with other microbiota, highlighting the complex interplay between microorganisms and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 NZ_CP031571.1 Bac0016997 Enterobacter hormaechei strain A1 "Enterobacter hormaechei strain A1 is a Gram-negative bacterium that demonstrates facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. This strain is predominantly found in host-associated habitats, suggesting a potential symbiotic or opportunistic relationship with its hosts. The ability to adapt to varying oxygen levels may confer advantages in diverse biological niches, particularly within the gastrointestinal tracts of animals, where fluctuations between aerobic and anaerobic conditions frequently occur.↵↵As a member of the Enterobacter genus, Enterobacter hormaechei strain A1 is likely to engage in metabolic processes that facilitate its survival and growth in conjunction with host organisms. The facultative anaerobic nature of this strain may enable it to utilize various substrates for energy production, contributing to its ecological versatility. This metabolic flexibility could play a role in its interactions with the host microbiome, potentially influencing nutrient cycling or the modulation of local immune responses.↵↵Further research into Enterobacter hormaechei strain A1 may reveal insights into its specific roles within host-associated environments, including its contributions to microbial community dynamics and its potential effects on host health. Understanding these interactions is crucial for elucidating the ecological significance of this strain in the complex interplay between microorganisms and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 NZ_CP031575.1 Bac0016998 Klebsiella pneumoniae strain N4b "Klebsiella pneumoniae strain N4b is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This strain does not exhibit sporulation and is classified as a facultative anaerobe, enabling it to thrive in environments with or without oxygen. Optimal growth occurs at a temperature of 37.0°C, which is consistent with its association with host environments, suggesting a potential adaptation to mammalian hosts.↵↵As a chemoheterotroph, K. pneumoniae strain N4b derives its energy from organic compounds, reflecting its metabolic versatility and ability to exploit a variety of substrates available in host-associated habitats. This adaptability may provide an ecological advantage in fluctuating environments, such as those encountered within host organisms, where nutrient availability can vary significantly.↵↵Understanding the traits of K. pneumoniae strain N4b can enhance our knowledge of its ecological role and potential interactions within host microbiomes, particularly in relation to its metabolic capabilities and environmental adaptability. This highlights the importance of studying such strains to better comprehend their biological functions and implications in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP031578.1 Bac0016999 Pseudomonas sp. phDV1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. phDV1 253237 NZ_CP031606.1 Bac0017000 Olleya aquimaris strain DAU311 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Olleya Olleya aquimaris 639310 NZ_CP031612.1 Bac0017001 Pseudomonas fluorescens strain Pf275 "Pseudomonas fluorescens strain Pf275 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy. P. fluorescens Pf275 thrives optimally at a temperature of 25.0 °C, which suggests a preference for moderate environmental conditions. As an aerobe, it requires oxygen for growth, positioning it within ecosystems where oxygen is readily available.↵↵The habitat of P. fluorescens strain Pf275 is diverse, reflecting its adaptability to a variety of environments. This adaptability may contribute to its role in various ecological niches, including soil and water systems, where it can participate in nutrient cycling and organic matter degradation. The ability of this strain to occupy multiple habitats underscores its ecological versatility and potential significance in bioremediation efforts and plant health.↵↵Overall, Pseudomonas fluorescens strain Pf275 exemplifies a microbe that not only thrives in specific temperature and oxygen conditions but also plays a crucial role in the ecological dynamics of its various habitats, potentially influencing microbial community structures and nutrient availability in its surroundings." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_CP031648.1 Bac0017002 Escherichia coli strain UK_Dog_Liverpool "Escherichia coli strain UK_Dog_Liverpool is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in environments with or without oxygen. Its optimal growth temperature is 37.0°C, which is consistent with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat.↵↵As a member of the genus Escherichia, this strain likely shares characteristics common to enteric bacteria, including its ability to ferment various carbohydrates and its role in the gut microbiome of mammals. The host-associated nature of E. coli strain UK_Dog_Liverpool suggests that it may play a role in the digestive processes or overall health of its canine host, although specific interactions or contributions to host metabolism remain to be established.↵↵The presence of this strain in dogs from Liverpool highlights the potential for geographic and host-specific variations within the E. coli species, reflecting the complex dynamics of host-microbe interactions. Further research could elucidate the ecological significance of this strain within the canine microbiome, contributing to our understanding of microbial diversity and its implications for pet health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP031653.1 Bac0017003 Staphylococcus aureus strain 199 "Staphylococcus aureus strain 199 is a Gram-positive coccus that typically arranges itself in clusters or singles. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is notably low, at 3.0°C, which suggests an adaptation to cooler habitats, potentially including cold-blooded hosts or environments with chillier microclimates.↵↵As a host-associated microbe, S. aureus strain 199 likely interacts with various biological systems, indicating a capacity for resilience under conditions that might be unfavorable for other microorganisms. The clustering arrangement of the cells may contribute to its ability to form biofilms, which can enhance survival and persistence in host-associated environments. Understanding the growth characteristics and environmental adaptations of this strain can provide valuable insights into its ecological roles, particularly in cooler environments where it may influence host health or microbial community dynamics. The ability to grow at lower temperatures may also suggest potential applications in biotechnology or food safety, where similar microbial traits are of interest." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_CP031668.1 Bac0017004 Staphylococcus aureus strain 64 "Staphylococcus aureus strain 64 is a Gram-positive cocci bacterium that typically arranges itself in clusters or singles. This strain is known to thrive in host-associated habitats, suggesting a potential association with various biological hosts. It exhibits facultative anaerobic metabolism, indicating its ability to survive and grow in both aerobic and anaerobic environments. Notably, Staphylococcus aureus strain 64 has an optimal growth temperature of 3.0°C, which may suggest a unique adaptation to cooler environments within its ecological niche.↵↵This strain’s clustering arrangement is characteristic of the Staphylococcus genus and may facilitate its survival in diverse settings, including those found in host tissues or associated environments. The facultative lifestyle allows it to exploit available oxygen and may enhance its resilience in fluctuating environmental conditions. Understanding the unique traits of Staphylococcus aureus strain 64 can provide insights into its ecological interactions and potential roles within host-associated microbiomes. The adaptability of this strain at lower temperatures may also indicate its potential significance in cold-associated environments, possibly influencing microbial community dynamics in such niches." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_CP031670.1 Bac0017005 Solimonas sp. K1W22B-7 Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Solimonas Solimonas sp. K1W22B-7 2303331 NZ_CP031704.1 Bac0017006 Acinetobacter wuhouensis strain WCHA60 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter wuhouensis 1879050 NZ_CP031709.1 Bac0017007 Klebsiella pneumoniae strain SCKP020003 "Klebsiella pneumoniae strain SCKP020003 is a Gram-negative, rod-shaped bacterium that typically exhibits a variety of cell arrangements, including chains, pairs, and singles. This strain is characterized as nonsporulating and thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in many mammalian hosts. As a chemoheterotroph, K. pneumoniae strain SCKP020003 derives its energy from organic compounds, reflecting its adaptation to a host-associated habitat.↵↵Being a facultative anaerobe, this microbe can grow in both the presence and absence of oxygen, allowing it to occupy diverse ecological niches within host organisms. Its metabolic versatility may contribute to its survival in various environments, including those characterized by fluctuating oxygen levels.↵↵Klebsiella pneumoniae is often studied for its role in human health and disease; however, the specific ecological interactions of strain SCKP020003 remain to be fully elucidated. The ability of this strain to thrive in host-associated environments highlights the potential for significant interactions with host microbiomes, suggesting that it may play a role in the complex dynamics of microbial communities within the host. Understanding these interactions could provide insights into the ecological roles of K. pneumoniae and its implications in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP031719.1 Bac0017008 Enterobacter hormaechei strain WCHEH020038 "Enterobacter hormaechei strain WCHEH020038 is a Gram-negative, facultative anaerobic bacterium primarily associated with host environments. As a member of the Enterobacter genus, this strain exhibits versatility in its metabolic capabilities, allowing it to thrive in both aerobic and anaerobic conditions. The host-associated habitat suggests a potential relationship with various organisms, where it may play a role in the microbial community dynamics or contribute to the host's microbiome.↵↵The Gram-negative nature of Enterobacter hormaechei strain WCHEH020038 is characterized by its thin peptidoglycan layer and an outer membrane, which can influence its interactions with the host and other microorganisms. This structural composition may also affect its response to environmental stressors, antibiotic efficacy, and overall survival in competitive microbial ecosystems.↵↵Research into Enterobacter hormaechei and its strains has highlighted their potential importance in understanding host-microbe interactions. This particular strain, with its facultative anaerobic metabolism, may adapt to varying oxygen levels within its host, indicating its capability to exploit different niches. Such adaptability could provide insights into the ecological roles of Enterobacter species in host-associated environments, including their potential contributions to nutrient cycling or interactions with the immune system. Further investigation into this strain may illuminate its specific functions within the microbiome and its implications for host health or disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 NZ_CP031722.1 Bac0017009 Streptococcus chenjunshii strain Z15 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus chenjunshii 2173853 NZ_CP031733.1 Bac0017010 Klebsiella pneumoniae subsp. pneumoniae strain Klebsiella "Klebsiella pneumoniae subsp. pneumoniae strain Klebsiella is a Gram-negative, rod-shaped bacterium that typically arranges itself in chains, pairs, or as single cells. This strain is nonsporulating and thrives optimally at a temperature of 37.0°C, indicating its adaptation to host-associated environments where it may encounter physiological temperature ranges. As a chemoheterotroph, this microbe derives its energy from organic compounds, further emphasizing its association with living hosts, where it can utilize nutrients available in various biological fluids.↵↵Klebsiella pneumoniae subsp. pneumoniae exhibits facultative anaerobic characteristics, allowing it to survive both in the presence and absence of oxygen. This versatility in oxygen usage likely contributes to its persistence in diverse ecological niches within host organisms. The ability to grow in varying oxygen conditions may also influence its interactions with the host microbiome, potentially affecting colonization dynamics and competition with other microbial species. Understanding these traits can provide insights into the ecological roles of this strain within its host, particularly in relation to its metabolic capabilities and adaptability to different environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 NZ_CP031734.1 Bac0017011 Streptomyces koyangensis strain VK-A60T "Streptomyces koyangensis strain VK-A60T is a Gram-positive, aerobic, spore-forming bacterium belonging to the genus Streptomyces, which is renowned for its ability to produce a variety of bioactive compounds. This strain exhibits the characteristic filamentous growth pattern typical of the Streptomyces genus, which is often associated with complex life cycles that include sporulation. As an aerobic organism, S. koyangensis strain VK-A60T requires oxygen for its metabolic processes, suggesting an ecological niche that may involve soil or decaying organic matter where oxygen is readily available.↵↵The spore-forming capability of this bacterium not only aids in its survival under unfavorable conditions but also plays a crucial role in its dispersal within its environment. The ability to produce spores allows S. koyangensis strain VK-A60T to withstand periods of nutrient scarcity or desiccation, potentially contributing to its resilience and adaptability in various habitats.↵↵Research into the metabolic pathways and secondary metabolites produced by S. koyangensis strain VK-A60T may unveil novel compounds with pharmaceutical or agricultural applications, reflecting the ecological importance of this bacterium in natural ecosystems as a source of biodiversity and biotechnological innovation. The exploration of its unique traits could advance our understanding of the interactions between soil microorganisms and their environments, emphasizing the significance of microbial diversity in ecological balance." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces koyangensis Gram-positive non-motile aerobic spore-forming 188770 NZ_CP031742.1 Bac0017012 Alcaligenes faecalis strain AU14 "Alcaligenes faecalis strain AU14 is a Gram-negative, rod-shaped bacterium primarily found in fresh water, hospital environments, and soil. This strain is classified as an aerobe, requiring oxygen for its metabolic processes. Its presence in various habitats, including both natural and anthropogenic environments, suggests a versatile adaptability to different ecological niches.↵↵A. faecalis is often associated with hospital settings, indicating its potential role in the microbial communities within these environments. This bacterium thrives in diverse substrates, reflecting its capacity to utilize a variety of organic compounds for growth. The isolation of A. faecalis in both aquatic and terrestrial ecosystems highlights its ecological significance, particularly in nutrient cycling and possibly in bioremediation processes in contaminated environments.↵↵The adaptability of Alcaligenes faecalis strain AU14 to oxygen-rich conditions and its ability to inhabit both fresh water and hospital settings position it as a noteworthy organism in microbial ecology. Its presence in these varied environments may offer insight into the dynamics of microbial interactions and the resilience of microbial communities in facing environmental changes. Understanding its ecological role could further elucidate the functions it performs in nutrient cycling and the potential impacts on water quality and health in hospital environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes faecalis Negative Rod 1 Aerobe Fresh water; hospital environments; hospital settings; HostAssociated; soil; water Human 511 NZ_CP031747.1 Bac0017013 Bacillus sp. E25 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. E25 393065 NZ_CP031749.1 Bac0017014 Pseudoalteromonas piscicida strain DE1-A Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 NZ_CP031760.1 Bac0017015 Salinimonas sediminis strain N102 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Salinimonas Salinimonas sediminis 2303538 NZ_CP031769.1 Bac0017016 Escherichia coli O91:H21 strain FWSEC0008 "Escherichia coli O91:H21 strain FWSEC0008 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, indicative of its host-associated habitat. As a facultative anaerobe, E. coli O91:H21 can grow in both the presence and absence of oxygen, allowing it to adapt to various microenvironments within its host. ↵↵The combination of these traits suggests that strain FWSEC0008 is well-equipped for a life closely associated with its host, potentially residing in the gastrointestinal tract or other body environments where nutrient availability and oxygen levels can fluctuate. The ability to thrive in diverse oxygen conditions may enhance its competitive advantage in colonizing specific niches within the host.↵↵Understanding such traits contributes to our broader knowledge of E. coli's versatility and adaptability, which are crucial for its survival and proliferation in complex biological systems. The nuanced interplay between its physiological characteristics and host environments may provide insights into the ecological roles of E. coli strains in health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 577675 NZ_CP031906.1 Bac0017017 Escherichia coli O103:H2 strain FWSEC0007 "Escherichia coli O103:H2 strain FWSEC0007 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that coincides with the physiological conditions of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli O103:H2 strain FWSEC0007 can metabolize in both the presence and absence of oxygen, allowing it to survive in various environments within the host's gastrointestinal tract.↵↵The ability to thrive in a host-associated habitat suggests that E. coli O103:H2 strain FWSEC0007 may play a role in the complex microbial ecosystems present in the intestines of its hosts. Understanding the ecological niche of this strain could provide insights into its interactions with other microbial communities, as well as its potential role in nutrient cycling or host health. Further studies may elucidate the specific functions and dynamics of this strain within the intestinal microbiome, enhancing our overall understanding of host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 376725 NZ_CP031908.1 Bac0017018 Escherichia coli O121:H19 strain FWSEC0006 "Escherichia coli O121:H19 strain FWSEC0006 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat. As a facultative anaerobe, E. coli O121:H19 can grow in both aerobic and anaerobic conditions, providing it with a versatile metabolic capability that enhances its survival in varying environments within host organisms. ↵↵The association with hosts suggests that this strain may play a role in the complex microbial ecosystems of the gastrointestinal tract, where it could contribute to nutrient absorption and the maintenance of gut homeostasis. Given its adaptive traits, E. coli O121:H19 may also be involved in the interactions between the host immune system and the microbial community, potentially influencing host health. Understanding the specific ecological role of this strain within its habitat could offer insights into the dynamics of microbial populations in the gastrointestinal environment and their implications for health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 991915 NZ_CP031910.1 Bac0017019 Escherichia coli O111:NM strain FWSEC0005 "Escherichia coli O111:NM strain FWSEC0005 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain, like other members of the Escherichia genus, is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is indicative of its adaptability to various habitats, particularly host-associated environments. Optimal growth occurs at a temperature of 37.0°C, aligning with the typical body temperature of warm-blooded hosts, suggesting a close association with such environments.↵↵The facultative anaerobic nature of E. coli O111:NM strain FWSEC0005 enables it to flourish in diverse ecological niches, where it can utilize available oxygen for respiration in aerobic conditions or switch to fermentation pathways in anaerobic settings. This versatility is significant for its survival and metabolism within host organisms, where it may play a role in the microbial community dynamics. Understanding this strain's traits contributes to a broader comprehension of the adaptability and ecological roles of E. coli strains in various environments, particularly those associated with animal and human hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 373045 NZ_CP031912.1 Bac0017020 Escherichia coli O157:H7 strain FWSEC0004 "Escherichia coli O157:H7 strain FWSEC0004 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average human body temperature, suggesting its adaptation to a host-associated habitat. E. coli O157:H7 FWSEC0004 is classified as a facultative anaerobe, indicating that it can grow in both aerobic and anaerobic environments, thus enhancing its survival and proliferation within diverse biological contexts, including the gastrointestinal tract of mammals.↵↵Given its host-associated habitat, E. coli O157:H7 FWSEC0004 may play a role in the complex microbial ecosystems found within the gut, interacting with both the host's immune system and other microbial inhabitants. The ability to thrive in varying oxygen conditions may provide this strain a competitive advantage in fluctuating environments, such as those experienced during digestion or in response to dietary changes. Understanding the specific conditions under which this strain flourishes could offer insights into its ecological niche and potential interactions within the microbiome of its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 83334 NZ_CP031913.1 Bac0017021 Escherichia coli O26:H11 strain FWSEC0001 "Escherichia coli O26:H11 strain FWSEC0001 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may enhance its adaptability within various host-associated habitats. Optimal growth conditions for E. coli O26:H11 FWSEC0001 are observed at 37.0°C, a temperature that aligns with the physiological temperature of many warm-blooded hosts.↵↵As a member of the Enterobacteriaceae family, E. coli O26:H11 is associated with the gastrointestinal tract of mammals and can play a complex role in the microbiome of its host. The ability of this strain to proliferate in diverse oxygen conditions may facilitate its survival in varying microenvironments within the host, potentially influencing metabolic interactions and nutrient cycling.↵↵This adaptability to different oxygen levels, combined with its optimal growth temperature, highlights the ecological versatility of E. coli O26:H11 FWSEC0001, underscoring the importance of understanding its role in host-associated ecosystems and its potential impact on host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 244319 NZ_CP031924.1 Bac0017022 Companilactobacillus zhachilii strain HBUAS52074 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus zhachilii 2304606 NZ_CP031933.2 Bac0017023 Aquimarina sp. BL5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aquimarina Aquimarina sp. BL5 1714860 NZ_CP031963.1 Bac0017024 Flavobacteriaceae bacterium strain AU392 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium 1871037 NZ_CP031964.1 Bac0017025 Aquimarina sp. AD10 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aquimarina Aquimarina sp. AD10 1714849 NZ_CP031965.1 Bac0017026 Rickettsia japonica strain LA4/2015 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia japonica 35790 NZ_CP032049.1 Bac0017027 Euzebyella marina strain RN62 "Euzebyella marina strain RN62 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 29.0°C. This strain, belonging to the genus Euzebyella, exhibits characteristics typical of marine microorganisms, suggesting its adaptation to life in aquatic habitats. As a member of the Euzebyella genus, it is likely involved in the cycling of organic matter within its ecosystem, potentially contributing to the breakdown of complex organic compounds in marine environments.↵↵The rod shape of Euzebyella marina strain RN62 may facilitate motility and nutrient uptake, which are advantageous traits for survival in nutrient-variable marine ecosystems. Given its aerobic nature, this strain likely plays a role in aerobic respiration processes, which are crucial for the maintenance of oxygen levels in marine habitats. ↵↵The specific growth conditions of Euzebyella marina strain RN62 indicate that it may be particularly well-suited to moderately warm marine environments, such as coastal areas where temperatures can fluctuate around the optimal range. The ability to thrive at this temperature may contribute to its ecological niche, allowing it to interact with other microorganisms and participate in biogeochemical processes within its habitat. Understanding its physiological traits could provide insights into the microbial dynamics of marine ecosystems and the potential responses of such communities to changing environmental conditions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Euzebyella Euzebyella marina Gram-negative rod non-motile aerobic 29 mesophilic 1761453 NZ_CP032050.1 Bac0017028 Prevotella denticola strain KCOM 1525 "Prevotella denticola strain KCOM 1525 is a Gram-negative bacterium primarily associated with the oral cavity, specifically inhabiting the environment of human teeth. This microbe is part of the diverse microbiota found in dental plaque, which plays a critical role in maintaining oral health and influencing disease processes. The Gram-negative nature of Prevotella denticola suggests that it possesses a complex cell wall structure characterized by an outer membrane containing lipopolysaccharides, which may contribute to its interactions within the oral microbiome.↵↵As a member of the Prevotella genus, P. denticola is known for its ability to metabolize a variety of carbohydrates and proteins, potentially aiding in the breakdown of organic matter in its habitat. Its presence in dental biofilms highlights its significance in oral ecology, where it may participate in competitive interactions with other microbial species. Understanding the traits of P. denticola strain KCOM 1525 can provide insights into the dynamics of microbial communities in the oral cavity, particularly in relation to dental health and disease. ↵↵The specific adaptation of P. denticola to tooth surfaces underscores its potential role in the complex interplay between host and microbiota, as the health of the oral environment can significantly influence overall systemic health. This emphasizes the importance of studying such microbes to better understand their contributions to both oral and systemic conditions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella denticola negative tooth 28129 NZ_CP032056.1 Bac0017029 Vibrio alfacsensis strain CAIM 1831 "Vibrio alfacsensis strain CAIM 1831 is a Gram-negative, ovoid-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism, thriving optimally at a temperature of 32.0°C. This strain is part of the Vibrio genus, which is characterized by its diverse metabolic capabilities and adaptability to varying environmental conditions. ↵↵The Gram-negative nature of V. alfacsensis strain CAIM 1831 suggests a complex cell wall structure, typically associated with an outer membrane containing lipopolysaccharides, which may play a role in its interaction with the environment and potential resistance to certain antimicrobial agents. The ovoid morphology indicates a distinct cellular shape that may influence its motility and nutrient acquisition strategies.↵↵The ability of this strain to grow in both aerobic and anaerobic conditions highlights its metabolic versatility, allowing it to thrive in a range of environments where oxygen availability is variable. This adaptability may provide insights into its ecological roles, particularly in nutrient cycling and energy flow in aquatic ecosystems where it may be found.↵↵Overall, the physiological traits of V. alfacsensis strain CAIM 1831 underscore its potential ecological significance, particularly in environments where temperature and oxygen levels fluctuate, contributing to the microbial diversity and functional dynamics of such ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alfacsensis Gram-negative ovoid facultative aerobe/anaerobe 32 mesophilic 1074311 NZ_CP032093.1 Bac0017030 Hydrogenovibrio crunogenus strain SP-41 "Hydrogenovibrio crunogenus strain SP-41 is a Gram-negative, non-spore-forming bacterium known for its unique metabolic capabilities. This microorganism is characterized by its ability to utilize hydrogen as an electron donor, which plays a significant role in its energy metabolism. Hydrogenovibrio crunogenus strain SP-41 is typically found in environments rich in hydrogen, suggesting a specialized adaptation to specific ecological niches where hydrogen is abundant.↵↵The Gram-negative nature of this strain indicates that it possesses a relatively thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in terms of its interaction with the surrounding environment, including resistance to various antimicrobial agents. The absence of sporulation in this strain suggests that it may have evolved to thrive in stable environmental conditions rather than relying on the formation of spores for survival during unfavorable conditions.↵↵Furthermore, the metabolic activities of Hydrogenovibrio crunogenus strain SP-41 may contribute to biogeochemical cycles, particularly in environments such as hydrothermal vents or anoxic zones, where microbial communities play a crucial role in hydrogen oxidation and nutrient cycling. Understanding the metabolic pathways and ecological roles of this strain could provide valuable insights into the functioning of microbial ecosystems where hydrogen is a key component, highlighting its importance in sustaining microbial life and influencing biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Hydrogenovibrio Hydrogenovibrio crunogenus Gram-negative non-spore-forming 39765 NZ_CP032096.1 Bac0017031 Malaciobacter marinus strain JCM 15502 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus 505249 NZ_CP032101.1 Bac0017032 Acinetobacter chinensis strain WCHAc010005 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter chinensis 2004650 NZ_CP032127.1 Bac0017033 Acinetobacter haemolyticus strain sz1652 "Acinetobacter haemolyticus strain sz1652 is a Gram-negative bacterium characterized by its aerobic metabolism. This strain, belonging to the Acinetobacter genus, exhibits typical traits associated with aerobic organisms, requiring oxygen for its growth and metabolic processes. The Gram-negative nature of Acinetobacter haemolyticus suggests a complex cell wall structure, which is indicative of its outer membrane containing lipopolysaccharides, a hallmark of many bacteria within this group.↵↵While specific information regarding pathogenicity or ecological niches of strain sz1652 is not provided, the Acinetobacter genus is generally known for its environmental versatility, often found in diverse habitats, including soil and water. Furthermore, Acinetobacter species are frequently associated with clinical settings, although the ecological role of strain sz1652 remains to be fully elucidated. ↵↵Understanding the traits of Acinetobacter haemolyticus strain sz1652 contributes to the broader knowledge of aerobic, Gram-negative bacteria and their potential applications in bioremediation or biotechnology. The presence of such strains in various environments may indicate their role in nutrient cycling and interactions within microbial communities, highlighting their ecological significance in maintaining environmental balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 NZ_CP032135.1 Bac0017034 Halomonas sp. JS92-SW72 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. JS92-SW72 2306583 NZ_CP032147.1 Bac0017035 Klebsiella pneumoniae strain XJ-K1 "Klebsiella pneumoniae strain XJ-K1 is a Gram-negative, nonsporulating rod that displays a versatile cell arrangement, occurring in chains, pairs, or as singles. This strain thrives optimally at 37.0°C, indicating a preference for conditions found in warm-blooded hosts. As a chemoheterotroph, K. pneumoniae strain XJ-K1 derives its energy from organic compounds, which aligns with its habitat being predominantly host-associated. Additionally, this strain is classified as a facultative anaerobe, allowing it to adapt to varying oxygen levels, thus enhancing its survival and metabolic flexibility in diverse environments.↵↵The ability of K. pneumoniae strain XJ-K1 to exist in multiple cellular arrangements may facilitate its colonization and persistence within host environments, potentially contributing to its ecological adaptability. Understanding these traits can provide insights into the strain's interactions with host organisms and its potential roles in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP032165.1 Bac0017036 Citrobacter freundii strain AR_0116 "Citrobacter freundii strain AR_0116 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is part of a diverse group of bacteria commonly found in various environments, including hospital sewage, the intestinal tract of humans and animals, as well as in soil and surface waters. ↵↵As a facultative anaerobe, C. freundii strain AR_0116 can grow in both aerobic and anaerobic conditions, allowing it to thrive in the variable oxygen environments characteristic of its habitats. Its presence in hospital sewage highlights its potential association with human activities and waste management systems, while its occurrence in soil and surface waters suggests a broader ecological role. ↵↵The adaptability of C. freundii strain AR_0116 to different environments may contribute to its survival and persistence in diverse ecological niches. This adaptability could facilitate its interactions with other microbial communities, potentially influencing nutrient cycling and the degradation of organic matter in its habitats. Further exploration of its ecological roles could provide insights into the dynamics of microbial communities in environments impacted by human activity." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NZ_CP032179.1 Bac0017037 Escherichia coli strain AR_0086 "Escherichia coli strain AR_0086 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain is a facultative anaerobe, which enables it to thrive in various environments, utilizing oxygen when available and switching to fermentation pathways in anaerobic conditions. Optimal growth for E. coli strain AR_0086 occurs at a temperature of 37.0°C, reflecting its adaptation to host-associated habitats, likely aligning with the body temperature of warm-blooded hosts.↵↵The habitat of E. coli strain AR_0086 is particularly significant, as it is associated with host organisms, suggesting a potential role in the microbiota of these environments. This association may contribute to its metabolic versatility and ability to adapt to fluctuating conditions within a host. The capacity to exist in both aerobic and anaerobic environments further highlights its ecological flexibility, which is characteristic of many E. coli strains.↵↵Understanding the traits of E. coli strain AR_0086 can provide insights into its potential interactions within host ecosystems, where it may participate in nutrient cycling or influence the overall microbial community dynamics. The strain’s adaptability to the host environment emphasizes the intricate relationships that microbes maintain with their hosts and the surrounding microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP032202.1 Bac0017038 Vibrio neocaledonicus strain CGJ02-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio neocaledonicus 1208308 NZ_CP032213.1 Bac0017039 Escherichia coli strain AR_0067 "Escherichia coli strain AR_0067 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 37.0°C, which is consistent with the physiological conditions found in the intestines of warm-blooded hosts, where it is often associated.↵↵As a host-associated microbe, E. coli strain AR_0067 is likely adapted to the specific conditions of its environment, contributing to its survival and proliferation. The ability to grow in pairs and as individual cells suggests potential for both cooperative and competitive interactions within microbial communities in the host. ↵↵The ecological role of E. coli strains like AR_0067 can be significant in nutrient cycling and maintaining gut homeostasis. The facultative anaerobic nature of this strain may also indicate its potential to adapt to varying oxygen levels within its habitat, suggesting a versatile metabolic capability that might influence local microbial dynamics. Understanding the specific traits of E. coli strain AR_0067 can provide insights into the broader ecological functions of similar bacteria in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP032260.1 Bac0017040 Streptomyces fradiae strain NKZ-259 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces fradiae 1906 NZ_CP032266.1 Bac0017041 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0073 "Enterobacter cloacae strain AR_0073 is a Gram-negative, rod-shaped bacterium exhibiting facultative anaerobic metabolism, allowing it to thrive in varied environments with or without oxygen. This organism has been isolated from multiple habitats, indicating its versatility and adaptability to different ecological niches. ↵↵As a member of the Enterobacter genus, strain AR_0073 shares characteristics common to many Enterobacter species, including the ability to ferment carbohydrates and utilize a range of substrates for growth. Its facultative anaerobic nature suggests that it can switch between aerobic respiration and fermentation, depending on the availability of oxygen, which may confer a competitive advantage in fluctuating environmental conditions.↵↵The ecological implications of Enterobacter cloacae strain AR_0073's adaptability are significant. Its presence in diverse habitats suggests it may play a role in nutrient cycling and microbial community dynamics. Such traits may also facilitate its survival in transient environments, where it can exploit available resources efficiently. Further investigation into this strain could enhance our understanding of its ecological roles and potential applications in biotechnology or bioremediation initiatives." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 NZ_CP032292.1 Bac0017042 Hymenobacter oligotrophus strain sh-6 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter oligotrophus 2319843 NZ_CP032318.1 Bac0017043 Azospirillum argentinense strain MTCC4035 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense 2970906 NZ_CP032322.1 Bac0017044 Azospirillum argentinense strain MTCC4036 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense 2970906 NZ_CP032332.1 Bac0017045 Azospirillum brasilense strain MTCC4038 "Azospirillum brasilense strain MTCC4038 is a Gram-positive, rod-shaped bacterium that thrives in microaerophilic conditions, primarily found in the rhizosphere of various plants and in soil environments. This strain is part of a group of free-living nitrogen-fixing bacteria, known for its association with plant roots, where it plays a significant role in promoting plant growth and enhancing nutrient availability. ↵↵The microaerophilic nature of A. brasilense indicates that it requires low levels of oxygen for optimal growth, which is characteristic of many soil-dwelling microorganisms that inhabit the rhizosphere. These conditions allow the bacterium to effectively interact with plant roots while simultaneously contributing to soil health through nitrogen fixation, a critical process for enriching soil nitrogen levels and supporting plant nutrition.↵↵The presence of A. brasilense MTCC4038 in the rhizosphere suggests its potential utility in agricultural practices, particularly in sustainable farming systems that aim to enhance crop productivity while minimizing chemical fertilizer use. Its symbiotic interactions with plant roots highlight the importance of microbial communities in soil ecosystems, showcasing the complex relationships that can exist between plants and beneficial soil microbes. Understanding these dynamics may offer insights into improving soil fertility and plant health through the application of beneficial microorganisms." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum brasilense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 NZ_CP032339.1 Bac0017046 Azospirillum brasilense strain MTCC4039 "Azospirillum brasilense strain MTCC4039 is a Gram-positive, rod-shaped bacterium that thrives in microaerophilic conditions, primarily inhabiting the rhizosphere of various plants and the surrounding soil environment. This strain is notable for its association with plant roots, where it plays a significant role in the complex interactions between soil microorganisms and plant health. ↵↵The microaerophilic nature of Azospirillum brasilense strain MTCC4039 allows it to efficiently utilize oxygen at lower concentrations, which is characteristic of its ecological niche within the rhizosphere. Its presence in the soil and on plant roots suggests that it may contribute to the nitrogen fixation processes, enhancing nutrient availability for plants, although specific data on its nitrogen-fixing capabilities in this strain are not provided. ↵↵The ecological role of Azospirillum brasilense strain MTCC4039 is particularly significant in agricultural contexts, where it may assist in promoting plant growth and improving soil quality. This interaction underscores the potential of using beneficial microbes like this strain in sustainable agriculture practices, aiming to enhance crop yields while minimizing chemical fertilizer use. Overall, Azospirillum brasilense strain MTCC4039 exemplifies the intricate relationships between soil microorganisms and plant systems, highlighting the importance of microbial diversity in supporting healthy ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum brasilense positive Rod Yes microaerophilic plant roots; rhizosphere; soil; soil rhizosphere 192 NZ_CP032345.1 Bac0017047 Lactiplantibacillus plantarum strain ZFM55 "Lactiplantibacillus plantarum strain ZFM55 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and exhibits facultative anaerobic behavior, indicating its ability to grow in both the presence and absence of oxygen. ↵↵Lactiplantibacillus plantarum, as a member of the lactic acid bacteria (LAB) group, is known for its versatile habitat, which includes various environments such as fermented foods and the gastrointestinal tracts of humans and animals. This adaptability to multiple habitats suggests its potential role in diverse ecological niches, likely contributing to fermentation processes and possibly influencing the microbial balance in its surrounding environment.↵↵The ability of L. plantarum strain ZFM55 to form chains may enhance its survival and functionality in specific ecosystems, facilitating interactions with other microbial species and contributing to the overall metabolic activity within those communities. This trait may also play a role in its biofilm formation capabilities, which can be advantageous in colonizing various substrates. Understanding the ecological implications of such traits could provide insights into the functional roles of L. plantarum in fermentation and gut health, as well as its potential applications in biotechnology and food preservation." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 NZ_CP032362.1 Bac0017048 Brevibacillus laterosporus strain E7593-50 "Brevibacillus laterosporus strain E7593-50 is a Gram-positive, rod-shaped bacterium known to inhabit diverse environments, including insects, red clay, red clay soil, and aquatic habitats. This strain exemplifies the adaptability of the Brevibacillus genus, which is commonly found in soil and various natural substrates. The presence of this bacterium in red clay and soil suggests a potential role in nutrient cycling and soil health, possibly contributing to organic matter decomposition and the overall microbial diversity of these ecosystems.↵↵Brevibacillus laterosporus is recognized for its ability to thrive in varied habitats, which may confer ecological advantages in nutrient-rich environments such as those found in red clay soils. The association with insects indicates a potential interaction that could be beneficial for both the microbe and its host, although the specifics of these relationships remain to be thoroughly investigated. The strain's resilience in different environments highlights its potential as a model organism for studying microbial ecology and the dynamics of soil microbiomes.↵↵Overall, Brevibacillus laterosporus strain E7593-50 underscores the significance of microbial diversity in terrestrial ecosystems and raises intriguing questions about its ecological roles and interactions within its habitats." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus laterosporus positive Rod insects; red clay; red clay soil; soil; water 1465 NZ_CP032411.1 Bac0017049 Paenibacillus lautus strain E7593-69 "Paenibacillus lautus strain E7593-69 is a Gram-positive, rod-shaped bacterium primarily isolated from soil environments. This strain exhibits the characteristic traits of the Paenibacillus genus, which is known for its diverse metabolic capabilities and ecological significance. The Gram-positive nature of Paenibacillus lautus suggests a robust cell wall structure, typical of many soil-dwelling bacteria, which may contribute to its resilience in varying environmental conditions.↵↵As a member of the soil microbiome, Paenibacillus lautus strain E7593-69 likely plays a pivotal role in nutrient cycling and organic matter decomposition. These bacteria are often involved in the breakdown of complex organic compounds, facilitating soil fertility and supporting plant growth. The ecological interactions of P. lautus within the soil matrix may enhance the bioavailability of nutrients for surrounding flora, thus influencing soil health and productivity.↵↵Furthermore, the specific isolation of strain E7593-69 from soil suggests potential adaptations to this habitat, which may include the ability to thrive under specific moisture or nutrient conditions. Understanding the biological functions and ecological interactions of this strain could provide valuable insights into soil microbiology and the dynamics of microbial communities in terrestrial ecosystems." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus lautus positive Rod soil 1401 NZ_CP032413.1 Bac0017050 Clostridium fermenticellae strain JN500901 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium fermenticellae 2068654 NZ_CP032416.1 Bac0017051 Paenisporosarcina cavernae strain K2R23-3 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Paenisporosarcina Paenisporosarcina cavernae 2320858 NZ_CP032418.1 Bac0017052 Pseudomonas cavernae strain K2W31S-8 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cavernae 2320867 NZ_CP032419.1 Bac0017053 Yersinia hibernica strain CFS1934 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia hibernica 2339259 NZ_CP032487.1 Bac0017054 Tenacibaculum singaporense strain DSM 106434 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum singaporense 2358479 NZ_CP032548.1 Bac0017055 Bacillus thuringiensis strain QZL38 "Bacillus thuringiensis strain QZL38 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain is typically found in host-associated habitats, suggesting a potential relationship with specific organisms or environments that support its growth and survival.↵↵As a member of the Bacillus genus, B. thuringiensis strain QZL38 is likely to exhibit the characteristic resilience of spore-forming bacteria, allowing it to endure unfavorable environmental conditions through the formation of endospores. This sporulation capability is a critical survival strategy that enhances its persistence in diverse ecological niches.↵↵Facultative anaerobic metabolism indicates that B. thuringiensis strain QZL38 can thrive in both aerobic and anaerobic environments, which may provide it with a competitive advantage in varying habitats. The adaptability to different oxygen levels allows it to exploit a range of ecological settings, particularly those associated with specific hosts where oxygen availability may fluctuate.↵↵Understanding the traits of B. thuringiensis strain QZL38 enhances our appreciation for its ecological roles, particularly in the context of its interactions with host organisms. Its ability to associate with hosts could suggest a role in biological control or symbiosis, although further studies would be needed to elucidate these interactions more clearly." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP032609.1 Bac0017056 Pseudomonas fluorescens strain PF08 "Pseudomonas fluorescens strain PF08 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells. This strain is classified as a heterotroph, indicating that it obtains its energy from organic compounds, and it thrives optimally at a temperature of 25.0°C. P. fluorescens is an aerobic organism, requiring oxygen for growth and metabolism.↵↵The habitat of Pseudomonas fluorescens strain PF08 is diverse, allowing it to inhabit various environments. Its ability to adapt to multiple habitats suggests a certain ecological versatility, which may provide advantages in competing for resources and occupying different ecological niches. The presence of this strain in various environments highlights its potential role in biogeochemical cycles, particularly in the breakdown of organic matter and nutrient cycling.↵↵The unique combination of traits exhibited by Pseudomonas fluorescens strain PF08 underscores its ecological significance. Its aerobic metabolism and heterotrophic lifestyle may contribute to its effectiveness in bioremediation processes, where it could facilitate the degradation of pollutants in oxygen-rich environments. This capability positions P. fluorescens strain PF08 as a potential candidate for applications in environmental microbiology, particularly in efforts aimed at soil and water decontamination." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_CP032618.1 Bac0017057 Streptococcus gwangjuense strain KCOM 1679 (=ChDC B345) Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gwangjuensis 1433513 NZ_CP032621.1 Bac0017058 Gryllotalpicola protaetiae strain 2DFW10M-5 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gryllotalpicola Gryllotalpicola protaetiae 2419771 NZ_CP032624.1 Bac0017059 Apilactobacillus bombintestini strain BHWM-4 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus bombintestini 2419772 NZ_CP032626.1 Bac0017060 Lactococcus allomyrinae strain 1JSPR-7 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus allomyrinae 2419773 NZ_CP032627.1 Bac0017061 Lactiplantibacillus plantarum strain ZFM4 "Lactiplantibacillus plantarum strain ZFM4 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 25°C, which suggests its adaptation to mesophilic environments. ↵↵L. plantarum strains are known for their versatility in various habitats, indicating that strain ZFM4 may be found in diverse ecological niches, including fermented foods and the gastrointestinal tracts of animals. This adaptability is significant, as it underscores the potential role of L. plantarum in both food fermentation processes and as a beneficial microbiota component in the digestive systems of various hosts.↵↵The facultative anaerobic nature of this strain allows it to survive and grow in both aerobic and anaerobic conditions, further enhancing its ecological versatility. This trait may contribute to its ability to thrive in various substrates, potentially influencing fermentation dynamics and microbial community interactions in its habitats.↵↵In summary, L. plantarum strain ZFM4 exemplifies the adaptive capabilities of lactic acid bacteria, particularly in how they can occupy multiple ecological niches and exhibit flexible metabolic strategies, which may have implications for its application in food technology and probiotic development." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 NZ_CP032648.1 Bac0017062 Pseudomonas sp. Leaf58 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Leaf58 1736226 NZ_CP032677.1 Bac0017063 Brevundimonas naejangsanensis strain BRV3 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas naejangsanensis 588932 NZ_CP032707.1 Bac0017064 Lactiplantibacillus argentoratensis strain DSM 16365 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus argentoratensis 271881 NZ_CP032751.1 Bac0017065 Lactiplantibacillus pentosus strain DSM 20314 "Lactiplantibacillus pentosus strain DSM 20314 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives optimally at a temperature of 30.0°C. As a chemoheterotroph, it utilizes organic compounds as its energy source, reflecting its adaptability to diverse environments. This strain is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions, which contributes to its versatility in various habitats.↵↵The ability of Lactiplantibacillus pentosus strain DSM 20314 to metabolize a range of substrates enhances its ecological role, particularly in fermentative processes. This characteristic may facilitate its use in food fermentation and probiotic applications, as it can survive and function effectively in environments with fluctuating oxygen levels. Given its multiple habitats, this strain is likely to interact with various microbial communities, potentially influencing fermentation dynamics and contributing to the overall microbial ecology of its surroundings.↵↵The unique combination of its metabolic capabilities and environmental resilience suggests that Lactiplantibacillus pentosus strain DSM 20314 plays a significant role in the fermentation of plant materials, which may impact the nutritional and sensory properties of food products derived from these processes. Further investigation into its interactions within microbial consortia could provide insights into its functional contributions in food systems and broader ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus pentosus Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1589 NZ_CP032757.1 Bac0017066 Butyricimonas faecalis strain H184 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas faecalis 2093856 NZ_CP032819.1 Bac0017067 Aliarcobacter cryaerophilus D2610 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus 1032071 NZ_CP032825.1 Bac0017068 Sphingomonas paeninsulae strain YZ-8 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas paeninsulae 2319844 NZ_CP032827.1 Bac0017069 Aeromonas veronii strain FC951 "Aeromonas veronii strain FC951 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is an aerobic organism, requiring oxygen for its metabolic processes, and is predominantly found in sediment habitats. ↵↵The morphological characteristics of A. veronii strain FC951, including its rod shape and the tendency to form pairs, suggest adaptations that may facilitate its survival and interaction within its sedimentary environment. The sediment habitat implies a potential role in biogeochemical cycles, particularly in nutrient recycling and organic matter decomposition. ↵↵Understanding the ecological role of A. veronii strain FC951 in sediment environments could provide insights into microbial community dynamics and the influence of aerobic bacteria on sediment biogeochemistry. Further investigations into its interactions with other microorganisms and its responses to environmental changes could enhance our knowledge of sediment ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles Animal; Human 654 NZ_CP032839.1 Bac0017070 Mucilaginibacter celer strain HYN0043 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter celer 2305508 NZ_CP032869.1 Bac0017071 Escherichia coli strain WCHEC000837 "Escherichia coli strain WCHEC000837 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain, like other members of the species, thrives optimally at a temperature of 37.0°C, which is consistent with the human body temperature, indicating its adaptation to a host-associated habitat. E. coli is known for its facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments, a trait that enhances its survival in diverse ecological niches within the host. ↵↵The ability of strain WCHEC000837 to inhabit the host-associated environment suggests that it may play a role in the complex microbial communities found in the gastrointestinal tract, potentially influencing nutrient absorption and gut health. The versatile metabolic capabilities of this strain enable it to adapt to varying oxygen levels, which is advantageous for its persistence and function within the dynamic conditions of the host environment. Overall, the traits of Escherichia coli strain WCHEC000837 underscore its role as an integral member of the gut microbiota, contributing to the intricate interactions that define host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP032875.1 Bac0017072 Agrobacterium tumefaciens strain 1D1460 "Agrobacterium tumefaciens strain 1D1460 is a rod-shaped, Gram-negative bacterium that optimally grows at a temperature of 25.0°C and thrives in aerobic conditions. This strain is part of a diverse habitat, indicating its adaptability and potential versatility in various ecological niches. ↵↵As an aerobic organism, A. tumefaciens strain 1D1460 requires oxygen for its metabolic processes, which may impact its distribution in environments where oxygen availability fluctuates. The rod shape of this bacterium is characteristic of many members within the Agrobacterium genus, facilitating its motility and interaction with its surroundings. ↵↵The diverse habitat of strain 1D1460 suggests that it may play a role in various ecological functions, potentially including nutrient cycling and plant-microbe interactions. This adaptability may be particularly relevant in agricultural settings or natural ecosystems where it could contribute to the dynamics of microbial communities. Understanding the specific environmental parameters that support the growth of A. tumefaciens strain 1D1460 can provide insights into its ecological roles and potential applications in biotechnology, particularly in plant sciences." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP032927.1 Bac0017073 Levilactobacillus brevis strain CD0817 "Levilactobacillus brevis strain CD0817 is a Gram-positive, rod-shaped bacterium that can be found in both single and chain arrangements. This strain is classified as a facultative anaerobe, allowing it to thrive in varied oxygen environments, which contributes to its adaptability across multiple habitats. The optimal growth temperature for L. brevis strain CD0817 is 25.0°C, indicating its preference for moderate temperatures commonly found in diverse ecological niches.↵↵The ability of L. brevis strain CD0817 to exist as both singles and in chains may confer advantages in biofilm formation and resilience against environmental stressors, which are critical traits for survival in fluctuating habitats. Additionally, its facultative anaerobic nature suggests potential versatility in metabolic processes, enabling it to utilize both aerobic and anaerobic respiration depending on oxygen availability. ↵↵Understanding the ecological roles of L. brevis strain CD0817 can provide insights into its interactions with other microorganisms in its habitat. This adaptability may play a significant role in fermentation processes or contribute to the microbial balance in various environments, such as in food products or within the gastrointestinal tract of certain organisms. Further research could elucidate the specific ecological contributions of this strain, particularly in fermentation contexts or symbiotic relationships with other microbial communities." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 NZ_CP032932.1 Bac0017074 Janthinobacterium agaricidamnosum strain BHSEK Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium agaricidamnosum 55508 NZ_CP033019.1 Bac0017075 Metamycoplasma hominis strain TO0613 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hominis female reproductive tract; vagina 2098 NZ_CP033021.1 Bac0017076 Agrobacterium fabrum strain 1D132 "Agrobacterium fabrum strain 1D132 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This strain is classified as an aerobe, indicating its requirement for oxygen during metabolic processes. As a member of the Agrobacterium genus, it is known to inhabit multiple environments, which suggests a versatile ecological adaptability.↵↵The rod shape and aerobic nature of A. fabrum strain 1D132 may facilitate its growth in various habitats where oxygen is available, allowing it to engage in diverse metabolic pathways. Its ability to thrive in multiple environments may also reflect its potential role in interactions with plant hosts, a characteristic often associated with the Agrobacterium genus. ↵↵The ecological versatility of A. fabrum strain 1D132 highlights its importance in various ecosystems, potentially contributing to nutrient cycling or interacting with other microorganisms within its habitats. Further studies could elucidate the specific environmental interactions and functions of this strain, shedding light on its ecological significance." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium fabrum Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1176649 NZ_CP033022.1 Bac0017077 Agrobacterium fabrum strain 12D13 "Agrobacterium fabrum strain 12D13 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an aerobic organism. This strain has been isolated from multiple habitats, indicating its potential adaptability to various environmental conditions. The aerobic nature of A. fabrum strain 12D13 suggests that it relies on oxygen for its metabolic processes, which may influence its distribution and ecological interactions in its native environments.↵↵The ability of A. fabrum to persist in diverse habitats may be linked to its metabolic versatility, allowing it to exploit different substrates available in these environments. This adaptability could play a crucial role in its interactions with plant systems, as members of the Agrobacterium genus are known for their involvement in plant-microbe interactions, particularly in the context of genetic transfer. Overall, Agrobacterium fabrum strain 12D13 exemplifies the ecological versatility characteristic of its genus, suggesting avenues for further exploration in microbial ecology and biotechnology." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium fabrum Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 1176649 NZ_CP033034.1 Bac0017078 Serratia sp. 3ACOL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. 3ACOL1 2448483 NZ_CP033055.1 Bac0017079 Metamycoplasma phocicerebrale strain 1049 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma phocicerebrale 142649 NZ_CP033058.2 Bac0017080 Bacillus sp. WR11 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. WR11 2448811 NZ_CP033064.1 Bac0017081 Acidovorax sp. 1608163 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 1608163 2478662 NZ_CP033069.1 Bac0017082 Streptomyces dangxiongensis strain Z022 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces dangxiongensis 1442032 NZ_CP033072.1 Bac0017083 Plantibacter sp. PA-3-X8 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter sp. PA-3-X8 2480625 NZ_CP033107.1 Bac0017084 Acinetobacter wuhouensis strain WCHAW010062 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter wuhouensis 1879050 NZ_CP033118.1 Bac0017085 Vibrio owensii strain 1700302 "Vibrio owensii strain 1700302 is a Gram-negative bacterium that thrives in marine environments, specifically within the Changjiang estuary, where it is associated with coral-associated macroalgae symbiomes in the intertidal zone. As a facultative anaerobe, this strain is capable of surviving in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels in its habitat.↵↵The ecological niche of Vibrio owensii strain 1700302 highlights its potential role in marine ecosystems, particularly in the context of coral health and the dynamics of macroalgal communities. By residing in close association with macroalgae, this strain may contribute to nutrient cycling and the overall microbial diversity within these habitats. The intertidal zone, characterized by fluctuating environmental conditions, could also influence the metabolic versatility and ecological interactions of this bacterium with other microorganisms and the surrounding biota.↵↵Understanding the specific interactions and functional roles of Vibrio owensii strain 1700302 in its ecological context could provide insights into the health and resilience of coral-associated ecosystems, particularly in the face of environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio owensii negative 1 facultative anaerobe Changjiang estuary; coral-associated macroalgae symbiome; intertidal zone; Marine Animal 696485 NZ_CP033139.1 Bac0017086 Xanthomonas oryzae pv. oryzae strain CFBP7319 "Xanthomonas oryzae pv. oryzae strain CFBP7319 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments, necessitating aerobic conditions for its metabolism. This strain, part of the Xanthomonadaceae family, exhibits the hallmark characteristics of its genus, including a significant ability to adapt to various conditions within its host environments.↵↵As an aerobic organism, X. oryzae pv. oryzae strain CFBP7319 relies on oxygen for energy production, which may play a crucial role in its growth and survival within host tissues. The rod shape of the bacterium contributes to its motility and potential interactions with host cells, enabling it to effectively colonize and exploit its niche.↵↵Given its habitat preference and aerobic nature, this strain emphasizes the complex relationships that exist between plant-associated bacteria and their hosts. The ecological significance of X. oryzae pv. oryzae strain CFBP7319 may lie in its potential role in the microbial community dynamics within plant systems, where it could influence nutrient cycling and plant health through interactions with other microbial inhabitants. Understanding the characteristics of this strain can provide insights into its functional roles in its ecological niche and the broader implications for plant microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living 64187 NZ_CP033181.1 Bac0017087 Parasedimentitalea marina strain W43 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Parasedimentitalea Parasedimentitalea marina 2483033 NZ_CP033220.1 Bac0017088 Sphingobium yanoikuyae strain SJTF8 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium yanoikuyae 13690 NZ_CP033228.1 Bac0017089 Methylobacterium brachiatum strain TX0642 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium brachiatum 269660 NZ_CP033231.1 Bac0017090 Saccharolobus solfataricus strain SARC-H "Saccharolobus solfataricus strain SARC-H is a Gram-negative, coccoid archaeon that predominantly exists as single cells. This strain thrives optimally at a temperature of 85.0°C, indicating its adaptation to extreme thermophilic environments. As a lithotroph, SARC-H derives its energy from inorganic compounds, which aligns with its ecological niche in specialized habitats that likely provide the necessary substrates for lithotrophic metabolism. ↵↵Being an aerobe, SARC-H requires oxygen for its metabolic processes, suggesting that its habitat is oxygen-rich, potentially in geothermal environments where temperatures are elevated. This strain exemplifies the metabolic diversity present within extremophiles and contributes to our understanding of microbial life in extreme conditions. The ability to utilize inorganic sources for energy while thriving at high temperatures may provide insights into biogeochemical cycling in such extreme habitats, highlighting the ecological roles that hyperthermophilic organisms play in their environments." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus Negative Cocci No 1 1 Aerobe 85 Lithotroph Hyperthermophilic Specialized Free living Singles 2287 NZ_CP033236.1 Bac0017091 Saccharolobus solfataricus strain SARC-N "Saccharolobus solfataricus strain SARC-N is a Gram-negative coccoid archaeon that exhibits a single-cell arrangement and thrives optimally at 85°C. This organism is classified as a lithotroph, utilizing inorganic compounds as an energy source, and is obligately aerobic, requiring oxygen for its metabolic processes. S. solfataricus strain SARC-N is adapted to specialized habitats, suggesting a niche preference that may involve extreme environmental conditions typically associated with geothermal areas.↵↵Given its high-temperature preference and lithotrophic metabolism, S. solfataricus strain SARC-N may play a significant role in biogeochemical cycles within its specialized habitat, potentially contributing to the cycling of elements such as sulfur and carbon in extreme environments. This unique adaptation not only highlights the organism's resilience but also underscores its potential importance in understanding microbial life in high-temperature ecosystems. Furthermore, the ability of S. solfataricus strain SARC-N to survive and thrive in such conditions provides insights into the evolutionary mechanisms that enable life to flourish in extreme environments." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus Negative Cocci No 1 1 Aerobe 85 Lithotroph Hyperthermophilic Specialized Free living Singles 2287 NZ_CP033239.1 Bac0017092 Saccharolobus solfataricus strain SUL120 "Saccharolobus solfataricus strain SUL120 is a Gram-negative, coccoidal archaeon characterized by its single-cell arrangement and lithotrophic metabolism. This strain thrives at an optimal temperature of 85°C, indicative of its adaptation to high-temperature environments, commonly found in specialized habitats such as hot springs and geothermal areas. As an aerobic organism, S. solfataricus strain SUL120 requires oxygen for its energy production, utilizing inorganic compounds as electron donors in its metabolic processes.↵↵The unique physiological traits of S. solfataricus strain SUL120 not only reflect its adaptation to extreme environments but also highlight the organism's potential role in biogeochemical cycles, particularly in thermophilic ecosystems. Its lithotrophic lifestyle suggests a significant contribution to the cycling of nutrients in high-temperature habitats, where organic substrates may be scarce. Furthermore, the strain may serve as a model organism for studying the adaptations of extremophiles to thermal stress and their metabolic pathways, which could have implications in biotechnology and bioenergy research. Understanding the ecological functions of such specialized microbes could provide insights into their contributions to microbial diversity and ecosystem dynamics in extreme environments." Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus Negative Cocci No 1 1 Aerobe 85 Lithotroph Hyperthermophilic Specialized Free living Singles 2287 NZ_CP033241.1 Bac0017093 Salmonella enterica subsp. enterica serovar Tennessee strain "Salmonella enterica subsp. enterica serovar Tennessee strain is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within host organisms. As a chemoorganotroph, S. enterica serovar Tennessee utilizes organic compounds as its energy source, indicating its reliance on host-derived nutrients for growth and metabolism. ↵↵This strain exhibits microaerophilic oxygen requirements, suggesting that it thrives in environments with lower levels of oxygen than are present in the atmosphere, which is typical of many host-associated bacteria. The microenvironment within host tissues or fluids may provide an ideal habitat for this strain, offering not only the requisite nutrients but also the appropriate oxygen levels for its metabolic processes.↵↵The association of S. enterica serovar Tennessee with host organisms highlights its potential role within the microbiota, where it may interact with other microbial communities and the host's immune system. Understanding the ecological dynamics of this strain can provide insights into its adaptability and potential contributions to microbial diversity in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 143221 NZ_CP033345.1 Bac0017094 Burkholderia gladioli strain Burkholderia gladioli Co14 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia gladioli Yes phyllosphere 28095 NZ_CP033430.1 Bac0017095 Cereibacter sphaeroides strain AB24 "Cereibacter sphaeroides strain AB24 is a Gram-negative, rod-shaped bacterium that typically forms chains. This strain exhibits a versatile metabolic capability, utilizing photosynthesis as its primary energy source, which indicates its adaptation to environments where light is available. Optimal growth of C. sphaeroides strain AB24 occurs at 25.0°C, suggesting a preference for moderate temperatures that may reflect its ecological niche.↵↵This microbe is classified as both an aerobe and an anaerobe, allowing it to thrive in a variety of habitats, potentially including aquatic environments and soil, where oxygen levels can fluctuate. The ability to grow in both aerobic and anaerobic conditions may confer a competitive advantage in diverse ecological settings, enabling C. sphaeroides strain AB24 to occupy various niches and play a role in nutrient cycling.↵↵Given its photosynthetic capabilities and flexible oxygen requirements, C. sphaeroides strain AB24 could contribute to primary production in its habitat, influencing local microbial community dynamics and impacting the availability of organic matter for other organisms. This adaptability underscores the ecological significance of this strain in various environments, potentially aiding in the establishment of microbial populations in fluctuating conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter sphaeroides Negative Rod Yes 1 2 Aerobe; anaerobe 25 Photosynthetic Mesophilic Multiple Free living Chains 1063 NZ_CP033435.1 Bac0017096 Serratia sp. LS-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia sp. LS-1 2485839 NZ_CP033504.1 Bac0017097 Klebsiella sp. P1CD1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. P1CD1 2267618 NZ_CP033631.1 Bac0017098 Yersinia pseudotuberculosis strain FDAARGOS_581 "Yersinia pseudotuberculosis strain FDAARGOS_581 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, demonstrating versatility in its metabolic capabilities. It is classified as a heterotroph, relying on organic compounds as its energy source, which further supports its adaptability to various habitats.↵↵This strain has an optimal growth temperature of 28.0°C, indicating a preference for moderate environmental conditions, which may reflect its ecological niches, potentially ranging from soil to various animal hosts. The ability to grow at this temperature could also suggest an adaptation to environments that experience fluctuations in temperature, allowing Y. pseudotuberculosis FDAARGOS_581 to persist across diverse ecological settings.↵↵Understanding the traits of this strain can offer insights into its ecological roles, particularly in nutrient cycling and interactions with other microorganisms in its habitat. The adaptability of Yersinia pseudotuberculosis strain FDAARGOS_581 to different oxygen conditions and its heterotrophic lifestyle highlight its potential importance in microbial communities, where it may contribute to the degradation of organic material and influence the dynamics of microbial succession in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pseudotuberculosis Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 633 NZ_CP033712.1 Bac0017099 Propionibacterium acidifaciens strain FDAARGOS_576 "Propionibacterium acidifaciens strain FDAARGOS_576 is a Gram-positive bacterium that is notably found in various environments associated with dairy production and agriculture, including cheese, milk, pasture, silage, and soil. This strain is recognized for its role in the fermentation processes that contribute to the flavor and texture of certain cheeses, where it can be involved in the production of propionic acid and other metabolites. ↵↵The presence of P. acidifaciens in silage and pasture indicates its potential involvement in the fermentation of plant materials, which could enhance the nutritional value of animal feed. Furthermore, the isolation of this strain from diverse habitats suggests a degree of ecological versatility, allowing it to thrive in different environments where organic substrates are available.↵↵This adaptability may also reflect an important ecological role in nutrient cycling, particularly in dairy farming systems, where it could contribute to the microbial community dynamics in both soil and animal health. The ability of P. acidifaciens to persist in these varied environments may provide insights into its metabolic capabilities and interactions with other microorganisms, highlighting its significance in agricultural microbiology and food science." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium acidifaciens positive cheese; milk; pasture; silage; soil 556499 NZ_CP033719.1 Bac0017100 Corynebacterium jeikeium strain FDAARGOS_574 "Corynebacterium jeikeium strain FDAARGOS_574 is a Gram-positive, rod-shaped bacterium that typically exists as single cells and is classified as a facultative aerobe. This strain utilizes organic compounds as a source of energy, categorizing it as a chemoorganotroph. It has been isolated from multiple habitats, suggesting a versatile ecological niche and the ability to thrive in various environments.↵↵The Gram-positive nature of C. jeikeium indicates a thicker peptidoglycan layer in its cell wall, which is a characteristic feature of its genus. As a facultative aerobe, this strain can grow in the presence or absence of oxygen, allowing it to exploit different environmental conditions effectively. The ability to utilize various organic substrates may contribute to its adaptability and survival in diverse ecological settings.↵↵Further investigation into the ecological roles of C. jeikeium strain FDAARGOS_574 could provide insights into its interactions within microbial communities and its potential impact on biogeochemical cycles. Understanding its metabolic capabilities may also reveal implications for its use in biotechnological applications or its behavior in clinical settings, where it could be part of the complex microbiota associated with human health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium Positive Rod No 1 1 Facultative aerobe Chemoorganotroph Mesophilic Multiple Free living Singles 38289 NZ_CP033784.1 Bac0017101 Gardnerella vaginalis strain FDAARGOS_568 "Gardnerella vaginalis strain FDAARGOS_568 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions and exhibits chemoheterotrophic metabolism. This strain is optimally adapted to a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, suggesting a potential role in the human microbiome, particularly in the vaginal environment.↵↵As a member of the Gardnerella genus, this strain may contribute to the complex microbial community found in the female reproductive tract. The ability to grow under anaerobic conditions is particularly significant, as it enables G. vaginalis to establish itself in environments where oxygen levels are low, such as the vaginal niche, which is characterized by a delicate balance of microbial species.↵↵Understanding the metabolic capabilities and environmental preferences of Gardnerella vaginalis strain FDAARGOS_568 can provide insights into its ecological role and potential interactions with other microorganisms present in the host. Given its association with host environments, further exploration of this strain's functions may illuminate how it influences vaginal health, potentially shedding light on its contributions to the maintenance or disruption of microbial homeostasis in the reproductive tract." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 NZ_CP033836.1 Bac0017102 Bifidobacterium breve strain FDAARGOS_561 "Bifidobacterium breve strain FDAARGOS_561 is a Gram-positive, anaerobic bacterium predominantly found in the gastrointestinal tract, particularly within the microbiota of healthy newborns. This strain is notably present in human breast milk and the intestines of infants, where it plays a crucial role in shaping the gut microbiota during early development. Bifidobacterium species, including B. breve, are recognized for their beneficial effects on gut health, contributing to the establishment of a balanced microbiota in infants.↵↵The anaerobic nature of B. breve indicates its adaptation to low-oxygen environments, such as those found in the gut, where it thrives alongside other microbial communities. The presence of this strain in breast milk underscores its potential role in fostering a healthy microbiome in infants, as breast milk serves as a vital source of nutrients and beneficial microbes during the early stages of life. ↵↵Furthermore, the ability of B. breve to inhabit both breast milk and the gastrointestinal tract suggests a co-evolutionary relationship that may enhance the infant's immune development and metabolic functions. This unique ecological niche highlights the importance of B. breve in supporting the health and well-being of newborns, providing insights into the critical interactions between diet, microbiota, and host health during infancy." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium breve Positive Anaerobe breast milk; gastrointestinal tract; gut; human breast milk; human gut; infant gut microbiota; infant intestine; intestines; microbiota of healthy newborns 1685 NZ_CP033841.1 Bac0017103 Escherichia coli strain FDAARGOS_497 "Escherichia coli strain FDAARGOS_497 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain typically exists in pairs or as single cells, reflecting its versatile cellular arrangement. E. coli strains, including FDAARGOS_497, are classified as facultative anaerobes, allowing them to thrive in both aerobic and anaerobic conditions, which is advantageous for survival in diverse environments, particularly within the gastrointestinal tracts of warm-blooded hosts.↵↵The optimal growth temperature for E. coli strain FDAARGOS_497 is 37.0°C, aligning with the typical body temperature of its mammalian hosts, suggesting an adaptation to life in a warm-blooded organism. This temperature preference underscores the strain's potential role in the complex microbial communities found within host ecosystems.↵↵The ecological significance of E. coli strain FDAARGOS_497 may extend beyond its presence as a commensal organism, as it might also serve as an indicator of gut health and homeostasis. Its ability to inhabit specific niches within the host, coupled with its physiological traits, highlights the intricate relationships that exist between host organisms and their resident microbiota. Such interactions can provide valuable insights into microbial dynamics and the overall health of the host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP033848.1 Bac0017104 Burkholderia multivorans strain FDAARGOS_496 "Burkholderia multivorans strain FDAARGOS_496 is a Gram-negative, nonsporulating rod-shaped bacterium that is classified within the Burkholderia genus, known for its diverse ecological roles and associations with various hosts. This strain requires oxygen for growth, categorizing it as an aerobic organism. Its habitat is primarily host-associated, suggesting a potential interaction with specific hosts, although the nature of these interactions is not specified in the available data.↵↵The aerobic nature of B. multivorans indicates that it may participate in metabolic processes that require oxygen, which can influence its environmental distribution and interactions with other microbial communities. The absence of sporulation suggests that this strain may rely on other survival strategies in fluctuating environments, possibly adapting to the conditions present within its host or associated ecological niches.↵↵The ecological significance of B. multivorans strain FDAARGOS_496 may be underscored by its association with hosts, which may play a role in nutrient cycling or contribute to the microbiome's overall dynamics. Understanding the specific interactions this strain engages in could provide insights into its function within host-associated environments, potentially highlighting its role in maintaining host health or influencing host microbiota composition. Further research into its physiological traits and ecological interactions could unravel the complexities of its function in various ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 87883 NZ_CP033856.1 Bac0017105 Acinetobacter baumannii strain MRSN15313 "Acinetobacter baumannii strain MRSN15313 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37.0 °C and is classified as a chemoheterotrophic aerobe, indicating that it requires oxygen for growth and derives its energy from organic compounds. ↵↵The ability of A. baumannii to inhabit multiple environments suggests a remarkable versatility, allowing it to adapt to various ecological niches. This adaptability may contribute to its persistence in both natural and anthropogenic settings, where it can exploit a range of substrate sources for energy. The strain’s aerobic nature further indicates a reliance on oxygen-rich environments, which may influence its distribution in ecosystems, particularly in areas with ample organic matter and oxygen availability.↵↵Understanding the traits of A. baumannii strain MRSN15313 can provide valuable insights into its ecological roles and potential interactions within microbial communities. Its broad habitat range and metabolic capabilities may enable it to play a significant part in nutrient cycling in diverse environments, highlighting its ecological importance beyond its clinical relevance." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP033869.1 Bac0017106 Corynebacterium choanae strain 200CH Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium choanae 1862358 NZ_CP033896.1 Bac0017107 Corynebacterium pseudopelargi strain 812CH Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudopelargi 2080757 NZ_CP033899.1 Bac0017108 Chryseobacterium shandongense strain H5143 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium shandongense 1493872 NZ_CP033912.1 Bac0017109 Chryseobacterium shandongense strain G0239 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium shandongense 1493872 NZ_CP033914.1 Bac0017110 Chryseobacterium sp. G0162 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. G0162 2487063 NZ_CP033922.1 Bac0017111 Chryseobacterium lactis strain G0197 "Chryseobacterium lactis strain G0197 is a Gram-negative bacterium characterized by its unique physiological and biochemical traits. This strain, belonging to the genus Chryseobacterium, exhibits notable features typical of its classification, including a rod-shaped morphology and a non-spore-forming nature. Its Gram-negative cell wall structure suggests a thin peptidoglycan layer surrounded by an outer membrane, which is common among bacteria in this group and may contribute to its environmental resilience.↵↵While specific metabolic pathways, growth conditions, and ecological roles have not been detailed in the available data, the genus Chryseobacterium is generally recognized for its ability to degrade a variety of organic compounds, indicating potential roles in nutrient cycling within its habitat. Chryseobacterium lactis strain G0197 may thus contribute to the decomposition of organic matter and the maintenance of microbial diversity in its ecological niche.↵↵The unique traits of Chryseobacterium lactis strain G0197 suggest potential applications in bioremediation or as a source of novel enzymes for industrial processes, particularly where the breakdown of complex organic substrates is required. Further investigation into its metabolic capabilities and ecological interactions could provide valuable insights into its role within microbial communities and its potential utility in biotechnological applications." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium lactis Gram-negative non-motile 1241981 NZ_CP033925.1 Bac0017112 Chryseobacterium joostei strain DSM 16927 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium joostei 112234 NZ_CP033926.1 Bac0017113 Chryseobacterium bernardetii strain G0229 "Chryseobacterium bernardetii strain G0229 is a Gram-negative bacterium that exhibits an aerobic growth requirement. As a member of the Chryseobacterium genus, this strain is characterized by its ability to thrive in oxygen-rich environments, which is typical of many members of this group. The Gram-negative nature of C. bernardetii strain G0229 indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a feature that can influence its interactions with environmental factors and other microorganisms.↵↵While specific ecological niches or applications of this strain are not detailed in the available data, the aerobic nature suggests that it may play a role in environments where oxygen is abundant, potentially engaging in the degradation of organic matter or contributing to nutrient cycling. The presence of Chryseobacterium spp. in various ecological contexts indicates their versatility and possible involvement in biogeochemical processes.↵↵Considering the traits attributed to C. bernardetii strain G0229, further research may unveil its specific metabolic capabilities or interactions within microbial communities, hinting at its potential ecological significance in aerobic environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium bernardetii Gram-negative non-motile aerobic 1241978 NZ_CP033932.1 Bac0017114 Chryseobacterium balustinum strain KC_1863 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium balustinum 246 NZ_CP033934.1 Bac0017115 Pigmentiphaga sp. H8 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pigmentiphaga Pigmentiphaga sp. H8 2488560 NZ_CP033966.1 Bac0017116 Cupriavidus pauculus strain FDAARGOS_614 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus pauculus 82633 NZ_CP033968.1 Bac0017117 Brenneria rubrifaciens strain 6D370 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria rubrifaciens 55213 NZ_CP034035.1 Bac0017118 Arcanobacterium haemolyticum strain SCDR 1 "Arcanobacterium haemolyticum strain SCDR 1 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains, pairs, or as single cells. This microbe is characterized as nonsporulating and functions as a chemoorganotroph, utilizing organic compounds for energy. It is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which suggests adaptability to varying oxygen levels within its habitat.↵↵The habitat of A. haemolyticum strain SCDR 1 is notably host-associated, implying a close relationship with a specific host organism, which may provide essential nutrients and a conducive environment for growth. This association raises interesting questions regarding the bacterium's role within the host's microbiome and its potential interactions with the host's immune system.↵↵Given its unique characteristics, including the capacity to thrive in diverse oxygen conditions and its nonsporulating nature, A. haemolyticum strain SCDR 1 may play a significant role in the ecological balance of its host-associated environment. Understanding its metabolic versatility and growth patterns could provide insights into its ecological function and potential significance in microbial community dynamics within host organisms. Further research is warranted to elucidate its precise role and interactions in its ecological niche." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium haemolyticum Positive Rod No 1 1 Facultative anaerobe Chemoorganotroph Mesophilic HostAssociated Symbiotic Chains; Pairs; Singles Nonsporulating 28264 NZ_CP034038.1 Bac0017119 Methylocystis rosea strain GW6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylocystis Methylocystis rosea 173366 NZ_CP034087.1 Bac0017120 Acinetobacter baumannii strain A52 "Acinetobacter baumannii strain A52 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolic characteristics. This strain thrives optimally at 37.0°C, indicating its preference for warm environments, which may reflect its adaptability to host-associated habitats or human-associated settings. As a chemoheterotroph, A. baumannii strain A52 derives its energy from organic compounds, which underscores its versatility in utilizing various substrates in diverse ecological niches.↵↵The ability of A. baumannii strain A52 to inhabit multiple environments suggests a significant ecological plasticity. This trait may confer advantages in survival and persistence in fluctuating conditions, such as those found in both natural and anthropogenic ecosystems. This bacterium's aerobic nature indicates a reliance on oxygen for its metabolic processes, which further aligns with its potential presence in environments where oxygen is readily available. ↵↵Understanding the specific traits of A. baumannii strain A52 not only contributes to the broader knowledge of Acinetobacter species but also highlights the importance of studying its ecological roles and interactions within various habitats. The adaptability of this strain to diverse conditions may play a crucial role in its survival and proliferation in environments subject to selective pressures, including those encountered in clinical or industrial settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP034095.1 Bac0017121 Kaistella carnis strain G0081 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella carnis 1241979 NZ_CP034159.1 Bac0017122 Epilithonimonas vandammei strain F5649 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas vandammei 2487072 NZ_CP034161.1 Bac0017123 Enterococcus avium strain 352 "Enterococcus avium strain 352 is a Gram-positive cocci that is classified within the Enterococcus genus. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic conditions. Enterococcus avium strain 352 is primarily found in the intestines, where it plays a role in the complex microbial ecosystem.↵↵As a member of the Enterococcus genus, this strain may contribute to various processes in the gut microbiome, including the fermentation of carbohydrates and the production of short-chain fatty acids, which are essential for gut health. Its facultative anaerobic nature allows it to adapt to varying oxygen levels within the intestinal environment, potentially enhancing its survival and functional capacity in diverse gut conditions.↵↵The presence of Enterococcus avium strain 352 in the intestines may have implications for the overall balance of gut microbiota, as well as interactions with other microbial species. Its ability to thrive in fluctuating oxygen levels suggests that it may play a crucial role in the resilience of the intestinal microbiome, particularly in response to environmental changes or disturbances. Overall, the ecological role of Enterococcus avium strain 352 highlights the importance of this bacterium in maintaining intestinal health and its potential influence on the host's metabolic processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus avium Positive Cocci Facultative anaerobe intestines 33945 NZ_CP034168.1 Bac0017124 Nakamurella antarctica strain S14-144 Bacillati Actinomycetota Actinomycetes Nakamurellales Nakamurellaceae Nakamurella Nakamurella antarctica 1902245 NZ_CP034170.1 Bac0017125 Chryseobacterium taklimakanense strain F9257 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium taklimakanense 536441 NZ_CP034173.1 Bac0017126 Deinococcus psychrotolerans strain S14-83 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus psychrotolerans 2489213 NZ_CP034185.1 Bac0017127 Ligilactobacillus agilis strain La3 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus agilis 1601 NZ_CP034227.1 Bac0017128 Helicobacter pylori strain HP42K "Helicobacter pylori strain HP42K is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, typically found in the gastric mucosa of mammals. ↵↵The microaerophilic nature of H. pylori strain HP42K indicates that it requires reduced oxygen levels for growth, which is consistent with its ecological niche within the host stomach, where oxygen concentrations are lower than in the atmosphere. This bacterium's unique morphology, combined with its specific habitat and growth requirements, highlights its specialized adaptations for survival in a challenging environment. ↵↵The strain's association with the gastric environment suggests potential roles in influencing local microbial communities, possibly affecting host health and disease states. Understanding the ecological dynamics of H. pylori strain HP42K may provide insights into its interactions with both the host and other microbial inhabitants of the gastric ecosystem, revealing the intricate balance maintained within this specialized habitat." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_CP034312.1 Bac0017129 Tabrizicola piscis strain K13M18 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tabrizicola Tabrizicola piscis 2494374 NZ_CP034328.1 Bac0017130 Paenibacillus lutimineralis strain MBLB1234 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus lutimineralis 2707005 NZ_CP034346.1 Bac0017131 Streptomyces sp. KPB2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. KPB2 2305221 NZ_CP034353.1 Bac0017132 Escherichia coli strain RS571 "Escherichia coli strain RS571 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is optimally adapted to grow at 37.0°C, which corresponds to the body temperature of many mammalian hosts, indicating its potential association with warm-blooded organisms.↵↵E. coli strain RS571 is categorized as host-associated, suggesting a close relationship with its host environment, likely contributing to its ecological role within the gastrointestinal tract or other associated systems. The ability to survive in varying oxygen conditions may enhance its adaptability, allowing it to occupy diverse niches within its host.↵↵Given these traits, E. coli strain RS571 may play a significant role in the microbial community dynamics of its host, potentially influencing nutrient availability and the overall health of the host organism. Its rod shape and cell arrangement may also facilitate its interaction with other microbial species, contributing to complex interspecies relationships within the gut microbiome. Understanding the specific functions and interactions of this strain within its habitat could yield insights into its ecological contributions and the broader implications for host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP034391.1 Bac0017133 Herbaspirillum seropedicae strain AU13965 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum seropedicae rhizosphere 964 NZ_CP034394.1 Bac0017134 Escherichia coli strain CRE10 "Escherichia coli strain CRE10 is a Gram-negative, rod-shaped bacterium that typically presents in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in environments with or without oxygen. Optimal growth occurs at 37.0°C, which is consistent with the typical human body temperature, indicating a close association with host organisms. ↵↵As a member of the Enterobacteriaceae family, E. coli strain CRE10 is primarily found in host-associated habitats, suggesting an adaptation to living in the gastrointestinal tract of warm-blooded animals. The ability to exist in both aerobic and anaerobic conditions may provide this strain with a competitive advantage in fluctuating microenvironments within the host, where oxygen levels can vary significantly.↵↵The unique combination of traits observed in E. coli strain CRE10 positions it as an important organism for further investigation, particularly in understanding the dynamics of microbial communities in the gut and their interactions with the host immune system. Given its association with host environments, studying this strain may reveal insights into the roles of specific E. coli strains in health and disease, as well as their potential impacts on nutrient absorption and gut microbiota composition." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP034401.1 Bac0017135 Acinetobacter baumannii strain WPB103 "Acinetobacter baumannii strain WPB103 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotroph, utilizing organic carbon sources for energy. A. baumannii is an aerobic organism, requiring oxygen for its metabolic processes, which aligns with its capability to inhabit a variety of environments.↵↵The versatility of A. baumannii strain WPB103 in terms of habitat suggests that it can adapt to diverse ecological niches, potentially including soil, water, and clinical settings. This adaptability may facilitate its survival and persistence in various conditions, contributing to its significance in microbiological studies. Understanding the metabolic and environmental resilience of this strain could provide insights into its role in microbial communities and its interactions within different ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP034427.1 Bac0017136 Iodobacter ciconiae strain H11R3 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Iodobacter Iodobacter ciconiae 2496266 NZ_CP034433.1 Bac0017137 Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 2493668 NZ_CP034443.1 Bac0017138 Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 2493672 NZ_CP034447.1 Bac0017139 Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 2493673 NZ_CP034448.1 Bac0017140 Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 2493674 NZ_CP034449.1 Bac0017141 Jeotgalibaca ciconiae strain H21T32 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca Jeotgalibaca ciconiae 2496265 NZ_CP034465.1 Bac0017142 Pantoea agglomerans strain CFSAN047153 "Pantoea agglomerans strain CFSAN047153 is a Gram-negative, nonsporulating rod that demonstrates facultative anaerobic metabolism and is categorized as a chemoheterotroph, utilizing organic compounds as energy sources. This strain thrives optimally at a temperature of 30.0°C and has been isolated from diverse habitats, indicating its versatile adaptability to various environmental conditions. ↵↵As a member of the Pantoea genus, this strain is part of a group of bacteria known for their ecological roles in plant-associated environments and potential interactions with other microorganisms. The facultative anaerobic nature of Pantoea agglomerans strain CFSAN047153 suggests that it can efficiently metabolize substrates in both oxygen-rich and low-oxygen environments, contributing to its survival in fluctuating ecological niches. The ability to thrive in multiple habitats may also facilitate its role in nutrient cycling and plant health, although further investigation is warranted to elucidate the specific ecological implications of this strain." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 549 NZ_CP034470.1 Bac0017143 Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 "Bacillus subtilis subsp. subtilis NCIB 3610 (also known as ATCC 6051 and DSM 10) is a Gram-positive, rod-shaped bacterium that is capable of sporulation and demonstrates facultative anaerobic growth. This species typically thrives at an optimal temperature of 25.0°C and is often found in host-associated environments, suggesting a potential relationship with various biological systems.↵↵As a member of the Bacillus genus, B. subtilis subsp. subtilis is notable for its ability to form durable endospores under unfavorable conditions, enhancing its survival in diverse habitats. The facultative nature of its metabolism allows it to utilize both aerobic and anaerobic respiration, providing flexibility in nutrient utilization and ecological adaptability.↵↵The association of B. subtilis subsp. subtilis with host environments indicates its role in various biological processes, including potential contributions to the microbiome of its host. Given its status as a model organism in laboratory studies, this strain has been instrumental in advancing our understanding of microbial physiology, genetics, and cellular processes. Furthermore, its ability to sporulate may play a crucial role in its survival strategies, allowing it to withstand environmental stressors and persist in fluctuating habitats. The ecological implications of its sporulation and metabolic versatility underscore its significance in microbial ecology and its potential applications in biotechnology and agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 535026 NZ_CP034485.1 Bac0017144 Burkholderia cenocepacia strain YG-3 "Burkholderia cenocepacia strain YG-3 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic metabolism. This strain does not undergo sporulation, indicating a reliance on other survival mechanisms in its various habitats. B. cenocepacia is known for its ability to thrive in diverse environmental conditions, which underscores its adaptability and potential ecological significance.↵↵As a facultative aerobe, strain YG-3 can utilize both aerobic and anaerobic respiration, allowing it to occupy niches with varying oxygen availability. This trait may contribute to its presence in multiple habitats, where it can exploit different metabolic pathways depending on environmental conditions. ↵↵Moreover, the nonsporulating nature of this strain suggests that it may be less resilient to extreme environmental stressors compared to sporulating bacteria, potentially influencing its distribution and ecological interactions. The ability of B. cenocepacia to inhabit diverse environments highlights its ecological versatility and potential roles in biogeochemical cycles, such as nutrient cycling and organic matter decomposition. Overall, the traits of strain YG-3 suggest a microbe well-adapted to fluctuating habitats, capable of contributing to the microbial community dynamics in varied ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 NZ_CP034545.1 Bac0017145 Pseudomonas syringae strain Ps25 "Pseudomonas syringae strain Ps25 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a heterotroph, utilizing organic compounds as its energy source. This strain is characterized by its aerobic metabolism, necessitating the presence of oxygen for growth and survival. Pseudomonas syringae strains, including Ps25, are known to inhabit a variety of environments, indicating their versatility and adaptability to different ecological niches.↵↵The ability of Pseudomonas syringae strain Ps25 to thrive in multiple habitats suggests that it may play a role in various ecological interactions, including nutrient cycling and plant-microbe relationships. Its aerobic nature implies that it may be associated with environments where oxygen is readily available, such as soil or water systems, which could facilitate its interaction with other microbial communities and affect local biodiversity. Understanding the ecological functions of strains like Ps25 could provide insights into their contributions to ecosystem dynamics and their potential applications in biotechnology and agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 NZ_CP034558.1 Bac0017146 Flammeovirga pectinis strain L12M1 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga pectinis 2494373 NZ_CP034563.1 Bac0017147 Lactococcus lactis subsp. lactis strain UC06 "Lactococcus lactis subsp. lactis strain UC06 is a Gram-positive, nonsporulating coccus that thrives under facultative anaerobic conditions, with an optimal growth temperature of 40.0°C. This strain is part of a diverse habitat range, suggesting its adaptability to various environments. The cocci-shaped cells typically form pairs or chains, which is characteristic of the Lactococcus genus.↵↵As a facultative anaerobe, Lactococcus lactis subsp. lactis UC06 can metabolize substrates both in the presence and absence of oxygen, allowing it to exploit different ecological niches effectively. This metabolic flexibility may contribute to its versatility in fermentative processes, particularly in dairy products, where it plays a crucial role in the fermentation of lactose into lactic acid. Such lactic acid production is vital for the preservation of food and contributes to the development of flavors and textures in fermented dairy products.↵↵Interestingly, the ability of this strain to thrive at an elevated temperature (40.0°C) indicates potential applications in industrial fermentation processes, particularly those that require higher operational temperatures. Furthermore, the strain's nonsporulating nature suggests a more direct relationship with its environment, potentially impacting its interactions with other microbial communities involved in fermentation. This characteristic may also influence its use in biotechnological applications where rapid growth and metabolic activity are desired." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 NZ_CP034580.2 Bac0017148 Streptomyces luteoverticillatus strain CGMCC 15060 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces luteoverticillatus 66425 NZ_CP034587.1 Bac0017149 Flaviflexus ciconiae strain H23T48 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Flaviflexus Flaviflexus ciconiae 2496867 NZ_CP034593.1 Bac0017150 Xanthomonas vasicola pv. arecae strain NCPPB 2649 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vasicola 487849 NZ_CP034653.1 Bac0017151 Xanthomonas vasicola pv. musacearum NCPPB 4379 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vasicola 1094184 NZ_CP034655.1 Bac0017152 Xanthomonas vasicola strain NCPPB 902 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vasicola 56459 NZ_CP034657.1 Bac0017153 Limnobaculum zhutongyuii strain CF-458 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Budviciaceae Limnobaculum Limnobaculum zhutongyuii 2498113 NZ_CP034752.1 Bac0017154 Listeria seeligeri strain RR4 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria seeligeri vegetable storages 1640 NZ_CP034772.1 Bac0017155 Caldicellulosiruptor changbaiensis strain CBS-Z Bacillati Bacillota Clostridia Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor changbaiensis anaerobic 1222016 NZ_CP034791.1 Bac0017156 Mycoplasmopsis phocirhinis strain 852 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis phocirhinis 142650 NZ_CP034841.1 Bac0017157 Halorubrum ezzemoulense strain Fb21 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ezzemoulense 337243 NZ_CP034941.1 Bac0017158 Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633 "Bacillus spizizenii ATCC 6633 (also designated as JCM 2499) is a Gram-positive bacterium belonging to the genus Bacillus. This strain is characterized by its rod-shaped morphology, a common feature among members of the Bacillus genus, and it typically exhibits a robust ability to form endospores, which contributes to its resilience in various environmental conditions. Bacillus spizizenii is notable for its capacity to produce enzymes, including proteases and amylases, which facilitate the breakdown of complex organic materials, enhancing its potential role in biotechnological applications such as waste management and bio-remediation.↵↵The metabolic capabilities of Bacillus spizizenii ATCC 6633 suggest an adaptability to diverse ecological niches, particularly in soil environments where organic matter decomposition is essential. This strain may serve as a model organism for studying the enzymatic processes involved in nutrient cycling within terrestrial ecosystems. The ability to thrive in challenging conditions, alongside its enzymatic production, underscores its significance in both natural and industrial processes, potentially contributing to sustainable practices in agriculture and environmental management. Bacillus spizizenii ATCC 6633 exemplifies the functional diversity of soil bacteria, highlighting the intricate relationships between microbial life and ecosystem health." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus spizizenii positive 703612 NZ_CP034943.1 Bac0017159 Aequorivita ciconiae strain H23M31 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita ciconiae 2494375 NZ_CP034951.1 Bac0017160 Hydrogenovibrio thermophilus strain JR-2 "Hydrogenovibrio thermophilus strain JR-2 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and exhibits microaerophilic growth characteristics. This strain is non-spore-forming, indicating that it does not produce spores as a means of survival under adverse conditions. The microaerophilic nature of H. thermophilus strain JR-2 suggests that it requires low levels of oxygen for growth, which may influence its habitat preferences and interactions within microbial communities.↵↵The ability of this organism to thrive at elevated temperatures positions it as an interesting candidate for studies related to thermophilic microbial communities and their roles in various biogeochemical processes. Given its specific growth requirements and temperature tolerance, H. thermophilus strain JR-2 may play a role in nutrient cycling within environments that exhibit moderate thermal conditions, such as hot springs or thermally influenced aquatic systems. Insights into its metabolic pathways could provide valuable information regarding the adaptation mechanisms of microorganisms in fluctuating temperature environments, contributing to our understanding of microbial ecology in thermophilic habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Hydrogenovibrio Hydrogenovibrio thermophilus Gram-negative rod microaerophile 37 mesophilic non-spore-forming 265883 NZ_CP035033.1 Bac0017161 Leucobacter muris strain DSM 101948 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter muris 1935379 NZ_CP035037.1 Bac0017162 Pseudomonas viciae strain 11K1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas viciae 2505979 NZ_CP035088.1 Bac0017163 Ornithobacterium rhinotracheale strain FARPER-174b Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Ornithobacterium Ornithobacterium rhinotracheale microaerophile 28251 NZ_CP035107.1 Bac0017164 Geovibrio thiophilus strain DSM 11263 Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Geovibrio Geovibrio thiophilus anaerobic 139438 NZ_CP035108.1 Bac0017165 Lactiplantibacillus plantarum strain SRCM103361 "Lactiplantibacillus plantarum strain SRCM103361 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is around 25.0°C, indicating a preference for moderate conditions, which may reflect its adaptation to various habitats.↵↵Lactiplantibacillus plantarum is known for its versatility, as it can inhabit multiple ecological niches, suggesting a broad ecological role in fermentation processes and its presence in diverse microbial communities. Its ability to survive and grow in varying oxygen levels may facilitate its use in food fermentation and preservation, as well as in the gut microbiota of mammals.↵↵Notably, the strain’s chain arrangement can influence its functional properties, potentially enhancing its stability and interactions within complex microbial ecosystems. This structural characteristic may also play a role in its performance in competitive environments, where effective communication and cooperation among cells are crucial for survival. Understanding the ecological implications and functional roles of Lactiplantibacillus plantarum strain SRCM103361 could provide valuable insights into its potential applications in food science and probiotics." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum Positive Rod No 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains 1590 NZ_CP035148.1 Bac0017166 Pediococcus acidilactici strain SRCM103367 "Pediococcus acidilactici strain SRCM103367 is a Gram-positive, nonsporulating cocci that thrives as an anaerobic chemoheterotroph, with an optimal growth temperature of 30.0°C. This strain is part of a diverse group of lactic acid bacteria, known for their role in fermentation processes, and it is commonly found in various habitats, suggesting its adaptability to different environments. The anaerobic nature of this microbe indicates its reliance on fermentation pathways for energy production, which is consistent with the metabolic characteristics of many lactic acid bacteria.↵↵Pediococcus acidilactici strains are often utilized in food fermentation due to their ability to produce lactic acid, contributing to the preservation and flavor development in fermented products. The presence of strain SRCM103367 in multiple habitats highlights its potential versatility in industrial applications, particularly in the dairy and vegetable fermentation sectors. ↵↵Moreover, the ability of this strain to thrive in anaerobic conditions emphasizes its ecological role in environments where oxygen is limited, such as in the gastrointestinal tracts of animals and within various fermented foods. This adaptability not only suggests a potential for biotechnological exploitation but also indicates the importance of such microorganisms in maintaining the balance of microbial communities in anaerobic ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 NZ_CP035153.1 Bac0017167 Pediococcus acidilactici strain SRCM103387 "Pediococcus acidilactici strain SRCM103387 is a Gram-positive, nonsporulating coccus that thrives under anaerobic conditions, utilizing a chemoheterotrophic metabolic strategy to derive energy. This strain exhibits an optimal growth temperature of 30.0°C, suggesting a preference for moderately warm environments. Its ability to inhabit multiple habitats indicates a versatile ecological role, potentially contributing to various fermentation processes in diverse environments.↵↵As a member of the Pediococcus genus, strain SRCM103387 is likely involved in the fermentation of carbohydrates, which is a critical aspect of its ecological function. This metabolic capability may allow it to play a significant role in food preservation and the production of fermented products, reflecting its importance in both natural and industrial contexts. The presence of such a strain underscores the ecological diversity among lactic acid bacteria and their potential applications in biotechnology, particularly in the food industry, where they may enhance flavor, texture, and shelf life of fermented foods.↵↵Furthermore, the adaptability of Pediococcus acidilactici strain SRCM103387 to different habitats reinforces the notion that lactic acid bacteria are integral to ecosystem dynamics, particularly in anaerobic environments where they may contribute to nutrient cycling and organic matter decomposition." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 NZ_CP035155.1 Bac0017168 Enterococcus faecium strain SRCM103470 "Enterococcus faecium strain SRCM103470 is a Gram-positive coccus, primarily inhabiting fermented mare milk. As a facultative anaerobe, this strain can thrive in both oxygen-rich and oxygen-poor environments, making it adaptable to varying conditions during fermentation processes. ↵↵Known for its role in dairy fermentation, Enterococcus faecium is often associated with the production of lactic acid, which is crucial for the preservation and flavor development of fermented products. The strain's presence in fermented mare milk suggests a potential contribution to the unique microbial profile and biochemical characteristics of this specialty dairy product. ↵↵The ability of Enterococcus faecium strain SRCM103470 to grow under different oxygen conditions may also indicate its versatility in various fermentation settings, which could be beneficial for industrial applications in dairy technology. Furthermore, the strain's adaptation to the specific habitat of fermented mare milk highlights the importance of environmental factors in shaping microbial communities and their metabolic activities. Understanding the traits of this strain can provide insights into its role in the fermentation process and its potential applications in food science and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP035220.1 Bac0017169 Bacillus glycinifermentans strain SRCM103574 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus glycinifermentans gut; human gut microbiota 1664069 NZ_CP035233.1 Bac0017170 Clostridium sp. JN-9 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. JN-9 2507159 NZ_CP035280.1 Bac0017171 Acidilutibacter cellobiosedens strain JN-28 Bacillati Bacillota Tissierellia Tissierellales Acidilutibacteraceae Acidilutibacter Acidilutibacter cellobiosedens 2507161 NZ_CP035282.1 Bac0017172 Staphylococcus epidermidis strain ATCC 14990 "Staphylococcus epidermidis strain ATCC 14990 is a Gram-positive cocci bacterium characterized by its arrangement in clusters or singles. This strain is known to thrive optimally at a temperature of 30.0°C and exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen conditions within its host-associated habitat. ↵↵As a member of the Staphylococcus genus, S. epidermidis is predominantly found on human skin and mucosal surfaces, where it plays a role as a part of the normal microbiota. Its presence is typically benign; however, the adaptability of this strain to different environmental conditions may contribute to its ability to persist in host-associated environments. The strain's facultative anaerobic nature allows it to exploit both aerobic and anaerobic metabolic pathways, which may enhance its survivability in diverse niches, particularly in areas with fluctuating oxygen levels.↵↵Given its typical habitat and metabolic flexibility, S. epidermidis strain ATCC 14990 could be instrumental in understanding microbial dynamics on the skin and the role of commensal organisms in maintaining host health. Further research into its interactions with both host cells and other microbial species could provide insights into its potential benefits or implications for skin health and disease." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 1282 NZ_CP035288.1 Bac0017173 Staphylococcus haemolyticus strain ATCC 29970 "Staphylococcus haemolyticus strain ATCC 29970 is a Gram-positive coccus that exhibits a nonsporulating morphology and thrives optimally at 37.0°C. This strain is classified as a chemoheterotroph, indicating its reliance on organic compounds as both carbon and energy sources. S. haemolyticus is characterized as a facultative anaerobe, allowing it to adapt to varying oxygen levels in its environment while continuing to metabolize efficiently.↵↵This microbe has been isolated from diverse habitats, suggesting a versatile ecological niche that may contribute to its survival in various environments. Its adaptability to both aerobic and anaerobic conditions enhances its resilience, potentially facilitating its presence in both human-associated and environmental contexts.↵↵Given its broad habitat range and metabolic flexibility, S. haemolyticus strain ATCC 29970 exemplifies the ecological versatility of Staphylococcus species, which may play roles beyond those of primary pathogens, including contributions to microbial communities in skin microbiota or other ecological systems. This adaptability underscores the importance of further understanding the ecological roles of less-studied strains within the Staphylococcus genus." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1283 NZ_CP035291.1 Bac0017174 Micrococcus luteus strain ATCC 4698 "Micrococcus luteus strain ATCC 4698 is a Gram-positive, cocci-shaped bacterium that typically arranges itself in tetrads and is classified as an aerobic organism. This strain is part of a diverse genus known for its ability to thrive in various environments, reflecting its broad habitat range. Micrococcus luteus is commonly found in soil, dust, and on the skin of mammals, suggesting its adaptability to different ecological niches.↵↵As an aerobe, M. luteus requires oxygen for growth, which influences its metabolic pathways and ecological interactions. The tetrad arrangement of the cells may facilitate certain survival strategies, such as enhanced resistance to environmental stressors or improved nutrient acquisition in various habitats. The presence of such organisms in diverse environments underscores their potential roles in nutrient cycling and their interactions with other microbial communities. ↵↵Overall, Micrococcus luteus strain ATCC 4698 exemplifies the adaptability of bacteria within the Micrococcus genus, showcasing how structural traits such as cell shape and arrangement can influence ecological success in aerobic environments." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 NZ_CP035298.1 Bac0017175 Macrococcoides canis strain KM0218 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides canis 1855823 NZ_CP035309.1 Bac0017176 Janthinobacterium sp. 17J80-10 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. 17J80-10 2497863 NZ_CP035311.1 Bac0017177 Haemophilus parainfluenzae strain LC_1315_18 "Haemophilus parainfluenzae strain LC_1315_18 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultatively anaerobic respiration. This strain is typically found in host-associated habitats, indicating its adaptation to living in close association with various hosts, potentially including humans and other animals.↵↵As a member of the genus Haemophilus, this microbe shares characteristics with related species, particularly in its nutrient requirements and metabolic versatility. H. parainfluenzae is known to utilize a range of substrates for growth, reflecting its ability to thrive in diverse environments within host organisms. Its rod shape and Gram-negative cell wall structure are characteristic features that may influence its interactions with the host immune system.↵↵The facultative anaerobic nature of strain LC_1315_18 suggests that it can survive in both oxygen-rich and oxygen-poor environments, which may facilitate its persistence in various microenvironments within the host. This adaptability could be crucial for its survival and proliferation in dynamic host environments, where oxygen availability may fluctuate.↵↵Further investigation into Haemophilus parainfluenzae strain LC_1315_18 could provide insights into its role in the host microbiome and its potential interactions with the host immune system, shedding light on its ecological niche and functional contributions to host health. Understanding such dynamics may inform broader studies on the microbiota and its implications for host physiology and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 729 NZ_CP035368.2 Bac0017178 Salinibacterium sp. UTAS2018 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Salinibacterium Salinibacterium sp. UTAS2018 2508880 NZ_CP035375.1 Bac0017179 Bacillus subtilis strain SRCM103612 "Bacillus subtilis strain SRCM103612 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain thrives optimally at a temperature of 25.0 °C, indicating a preference for mesophilic conditions. As a host-associated microbe, it potentially plays a role in various symbiotic relationships or interactions within its host environment.↵↵The sporulation capability of Bacillus subtilis SRCM103612 is significant, as this trait allows the bacterium to form resilient spores that can withstand adverse environmental conditions. This feature not only contributes to its survival but also facilitates its dispersal in suitable habitats. The facultative anaerobic nature of this strain suggests that it can adapt to varying oxygen levels, which may enhance its ecological versatility within diverse microenvironments.↵↵The combination of these traits indicates that Bacillus subtilis strain SRCM103612 may be well-suited for roles in biogeochemical cycles or as a potential contributor to the microbiota of its host. Its ability to sporulate and survive in varying conditions may enhance its ecological resilience and functional diversity within microbial communities. Further studies could elucidate its specific interactions with host organisms and its potential applications in biotechnology or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NZ_CP035406.1 Bac0017180 Leisingera sp. NJS204 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Leisingera Leisingera sp. NJS204 2508307 NZ_CP035418.1 Bac0017181 Bifidobacterium pullorum subsp. gallinarum strain CACC 514 "Bifidobacterium pullorum subsp. gallinarum strain CACC 514 is a Gram-positive, nonsporulating, rod-shaped bacterium classified within the animal intestinal microflora. This strain exhibits chemoheterotrophic metabolic capabilities, utilizing organic compounds as its primary energy source. ↵↵The presence of Bifidobacterium species in the gastrointestinal tract is often associated with beneficial roles in digestion and gut health, particularly in avian species, where it may contribute to the overall microbiota balance. As a member of the intestinal microflora, strain CACC 514 is likely to play a role in the fermentation of dietary fibers, potentially leading to the production of short-chain fatty acids that can enhance gut health.↵↵Given its habitat and metabolic traits, Bifidobacterium pullorum subsp. gallinarum strain CACC 514 may be involved in critical interactions within its host's digestive system, influencing nutrient absorption and microbial community dynamics. Further studies on this strain could provide insights into its specific functions and contributions to the health of the host organism." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pullorum Positive Rod No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 78344 NZ_CP035465.1 Bac0017182 Agromyces protaetiae strain FW100M-8 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces protaetiae 2509455 NZ_CP035491.1 Bac0017183 Paenibacillus protaetiae strain FW100M-2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus protaetiae 2509456 NZ_CP035492.1 Bac0017184 Xylanimonas allomyrinae strain 2JSPR-7 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Xylanimonas Xylanimonas allomyrinae 2509459 NZ_CP035495.1 Bac0017185 Sphingosinicella sp. BN140058 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingosinicellaceae Sphingosinicella Sphingosinicella sp. BN140058 1892855 NZ_CP035501.1 Bac0017186 Kocuria marina subsp. indica strain CE7 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria marina 1049583 NZ_CP035505.1 Bac0017187 Haematobacter massiliensis strain OT1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Haematobacter Haematobacter massiliensis 195105 NZ_CP035508.1 Bac0017188 Escherichia coli strain U14A "Escherichia coli strain U14A is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns closely with the physiological conditions found within the intestinal tracts of warm-blooded hosts. E. coli strain U14A is classified as a facultative anaerobe, indicating its versatile metabolic capabilities that allow it to grow in both aerobic and anaerobic environments.↵↵The habitat of E. coli strain U14A is associated with host organisms, suggesting a symbiotic relationship where it may play a role in the gut microbiome or other host-associated environments. Such associations are critical for understanding the dynamics of microbial communities within hosts, as they contribute to nutrient cycling and may influence host health.↵↵The ability of E. coli strain U14A to adapt to various oxygen levels and its colonization in host-associated habitats provide insights into the ecological flexibility of this bacterium. This adaptability is significant as it may facilitate the strain's survival in diverse environments, highlighting the intricate relationships between microorganisms and their hosts in maintaining homeostasis within microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP035516.1 Bac0017189 Staphylococcus haemolyticus strain PK-01 "Staphylococcus haemolyticus strain PK-01 is a Gram-positive, nonsporulating cocci that thrives optimally at 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, allowing it to adapt to various nutrient environments. Notably, S. haemolyticus strain PK-01 is classified as a facultative anaerobe, enabling it to grow in both aerobic and anaerobic conditions, which may contribute to its versatility across different habitats.↵↵The ability of S. haemolyticus strain PK-01 to inhabit multiple environments underscores its potential role in diverse ecological niches. This adaptability may facilitate its interaction with various microbial communities, influencing nutrient cycling and microbial dynamics. Understanding the specific ecological roles and interactions of this strain in its habitats could provide insights into its function within the broader microbial ecosystem." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1283 NZ_CP035541.1 Bac0017190 Enterobacter cloacae strain EN3600 "Enterobacter cloacae strain EN3600 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain is capable of thriving in various habitats, showcasing its versatility and adaptability to different environmental conditions. As a member of the Enterobacter genus, E. cloacae is known for its ability to utilize a range of organic compounds, which may contribute to its survival in diverse ecological niches.↵↵Facultative anaerobes like strain EN3600 are particularly noteworthy for their metabolic flexibility, as they can grow in the presence or absence of oxygen. This trait allows them to exploit a wide array of environments, from soil and water to human-made settings, potentially influencing nutrient cycling and microbial community dynamics. The ability to switch between aerobic and anaerobic respiration may also provide a competitive advantage in fluctuating environments where oxygen availability can vary significantly.↵↵In summary, Enterobacter cloacae strain EN3600 represents a resilient microbial entity with significant ecological implications, particularly in environments where oxygen levels may fluctuate. Its metabolic versatility not only allows for survival in diverse habitats but may also play a role in its interactions with other microorganisms and its contributions to biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 NZ_CP035635.1 Bac0017191 Enterococcus faecium strain UAMSEF_20 "Enterococcus faecium strain UAMSEF_20 is a Gram-positive, coccoid-shaped bacterium that is facultatively anaerobic and predominantly found in fermented mare milk. As a member of the Enterococcus genus, this strain showcases the typical characteristics associated with this group, including the ability to thrive in varying oxygen conditions, which may contribute to its adaptability in different fermentation environments.↵↵The habitat of Enterococcus faecium strain UAMSEF_20 in fermented mare milk highlights its potential role in dairy fermentation processes, where it may impact the flavor profile and preservation of the product. The presence of this strain in such a unique niche suggests that it may possess specific metabolic capabilities that allow it to utilize substrates present in mare milk efficiently.↵↵Additionally, the ability to grow in both aerobic and anaerobic conditions may confer advantages in fluctuating environments, enabling it to survive and maintain its presence in fermented dairy products. This strain exemplifies the diverse ecological roles that Enterococcus species can play in fermentation, potentially influencing not only the product characteristics but also the microbial community dynamics within fermented foods.↵↵In conclusion, Enterococcus faecium strain UAMSEF_20 represents an intriguing example of microbial adaptation to specialized habitats, such as fermented mare milk, underscoring the importance of studying such strains to understand their contributions to food microbiology and fermentation science." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP035662.1 Bac0017192 Edwardsiella piscicida strain MS-18-199 "Edwardsiella piscicida strain MS-18-199 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic growth, suggesting its ability to thrive in both aerobic and anaerobic environments. This strain is part of a diverse habitat spectrum, indicating its adaptability to various ecological niches. ↵↵As a member of the genus Edwardsiella, this strain is characterized by its versatile metabolic capabilities, which enable it to utilize different carbon sources under varying oxygen conditions. The facultative nature of E. piscicida MS-18-199 may provide it with a competitive advantage in fluctuating environments, where oxygen availability can change rapidly.↵↵The ability to inhabit multiple habitats implies a potential for diverse interactions within microbial communities, possibly affecting nutrient cycling and influencing the dynamics of other microbial populations. Furthermore, the strain’s nonsporulating nature may reflect its reliance on active growth strategies in its ecological niches, as opposed to enduring harsh conditions through sporulation. This characteristic can be particularly significant in environments where rapid proliferation is crucial for survival.↵↵In summary, Edwardsiella piscicida strain MS-18-199 exemplifies a versatile microbial entity that can adapt to various conditions, emphasizing the ecological importance of its metabolic flexibility and the role it may play in maintaining microbial diversity in its habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella piscicida Negative Rod No 1 2 Facultative Mesophilic Multiple Free living Nonsporulating 1263550 NZ_CP035668.1 Bac0017193 Pseudolysobacter antarcticus strain AQ6-296 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Pseudolysobacter Pseudolysobacter antarcticus 2511995 NZ_CP035703.1 Bac0017194 Enterobacter cloacae strain CZ-1 "Enterobacter cloacae strain CZ-1 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This organism exhibits versatility in its habitat, being found across multiple environments, which underscores its adaptability and potential ecological significance. As a facultative anaerobe, E. cloacae strain CZ-1 can thrive in both the presence and absence of oxygen, enabling it to occupy diverse niches and interact with various microbial communities.↵↵The ability to utilize different metabolic pathways in varying oxygen conditions may contribute to its resilience and survival in fluctuating environments. This trait suggests a potential role in biogeochemical cycles, where E. cloacae strain CZ-1 may participate in the decomposition of organic materials or interact with other microorganisms to influence nutrient cycling. The adaptability of this strain to multiple habitats highlights its ecological importance and underscores the need for further research to elucidate its specific roles in different ecosystems and its interactions with other microbial species." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 NZ_CP035738.1 Bac0017195 Lactococcus lactis strain SRCM103457 "Lactococcus lactis strain SRCM103457 is a Gram-positive, nonsporulating coccus that thrives under facultative anaerobic conditions, with an optimal growth temperature of 40.0°C. This strain is part of a diverse group of lactic acid bacteria commonly associated with various fermentation processes in both food and non-food environments. ↵↵Lactococcus lactis is well-known for its role in dairy fermentation, particularly in the production of cheese and yogurt; however, strain SRCM103457's adaptability to different habitats suggests it may also be capable of contributing to other fermentation-related applications beyond traditional dairy products. The strain's facultative anaerobic nature indicates its ability to grow in both the presence and absence of oxygen, enhancing its versatility in various environments where oxygen levels may fluctuate.↵↵The ability of Lactococcus lactis to thrive at elevated temperatures, such as 40.0°C, may provide insights into its potential use in processes that require higher thermal tolerances, which could be beneficial in industrial fermentation settings. Furthermore, its nonsporulating characteristic may influence its survival and stability during processing and storage, making it a valuable candidate for biotechnological applications. Overall, Lactococcus lactis strain SRCM103457 exemplifies the ecological versatility and functional potential of lactic acid bacteria in diverse microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human; Non-pathogenic 1358 NZ_CP035757.1 Bac0017196 Sphingomonas paucimobilis strain AIMST S2 "Sphingomonas paucimobilis strain AIMST S2 is a rod-shaped, nonsporulating bacterium that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This strain thrives in aerobic environments, indicating a reliance on oxygen for its metabolic processes. It has been isolated from a variety of habitats, reflecting its adaptability to diverse ecological niches.↵↵The rod shape of S. paucimobilis strain AIMST S2 may confer advantages in nutrient uptake and mobility within its environments, facilitating efficient colonization and interaction with other microorganisms. As a non-sporulating organism, it likely relies on vegetative growth to propagate, which may influence its survival strategies in fluctuating environmental conditions. ↵↵Understanding the metabolic capabilities and ecological versatility of S. paucimobilis strain AIMST S2 could provide insights into its role in biogeochemical cycles, particularly in aerobic environments where organic matter decomposition is critical. Its ability to thrive in multiple habitats underscores the potential for S. paucimobilis strains to contribute to ecosystem functions, such as organic carbon turnover and nutrient cycling, thereby playing a significant role in maintaining ecological balance." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas paucimobilis Rod No 1 Aerobic Chemoheterotroph Mesophilic Multiple Nonsporulating 13689 NZ_CP035765.1 Bac0017197 Limosilactobacillus reuteri strain ATG-F4 "Limosilactobacillus reuteri strain ATG-F4 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its capacity to thrive in both aerobic and anaerobic environments. Limosilactobacillus reuteri is known to inhabit diverse habitats, suggesting its adaptability and potential utility in various ecological niches. ↵↵The ability of strain ATG-F4 to grow in the presence or absence of oxygen may confer advantages in fluctuating environmental conditions, making it a versatile member of microbial communities. This adaptability could also facilitate its application in fermentation processes and probiotic formulations, where oxygen levels can vary significantly.↵↵Notably, the habitat diversity of L. reuteri strains, including strain ATG-F4, implies a potential role in the gut microbiota of various hosts, where they may contribute to gut health and microbial balance. Understanding the specific ecological roles and interactions of L. reuteri strain ATG-F4 within its environments remains an important area for further research, particularly regarding its metabolic capabilities and symbiotic relationships with other microorganisms." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 NZ_CP035790.1 Bac0017198 Leucobacter triazinivorans strain JW-1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter triazinivorans 1784719 NZ_CP035806.1 Bac0017199 Pseudoduganella lutea strain DSM 17473 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Pseudoduganella Pseudoduganella lutea 321985 NZ_CP035913.1 Bac0017200 Synechococcus sp. WH 8101 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. WH 8101 59932 NZ_CP035914.1 Bac0017201 Campylobacter coli strain RM2228 "Campylobacter coli strain RM2228 is a Gram-negative, microaerophilic bacterium that belongs to the Campylobacter genus, which is characterized by its spiral-shaped morphology and distinctive metabolic requirements. This strain, like other members of its genus, requires a reduced oxygen environment for optimal growth, suggesting a specialized adaptation to specific ecological niches where oxygen levels are lower than atmospheric concentrations. ↵↵Campylobacter coli is commonly associated with the gastrointestinal tracts of various animals, particularly pigs and poultry, which serve as reservoirs for this organism. The microaerophilic nature of strain RM2228 indicates its preference for environments with limited oxygen, which may influence its distribution within host organisms and in the environment. The ability of Campylobacter species to thrive in such conditions may also provide insights into their survival mechanisms and interactions with the host microbiome.↵↵The metabolic characteristics of strain RM2228 may have implications for its role in biogeochemical cycles, particularly in the context of nutrient cycling in anaerobic environments. Understanding the specific traits of this strain can enhance knowledge regarding the ecological significance of Campylobacter species, particularly in relation to their interactions with other microorganisms and their potential impact on host health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 NZ_CP035927.1 Bac0017202 Acinetobacter cumulans strain WCHAc060092 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter cumulans 2136182 NZ_CP035934.2 Bac0017203 Blautia producta strain PMF1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia producta anaerobic human colonic bacteria 33035 NZ_CP035945.1 Bac0017204 Pseudomonas tructae strain SNU WT1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tructae 2518644 NZ_CP035952.1 Bac0017205 Klebsiella huaxiensis strain WCHKl090001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella huaxiensis 2153354 NZ_CP036176.1 Bac0017206 Escherichia coli strain WCHEC025970 "Escherichia coli strain WCHEC025970 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions commonly found in the gastrointestinal tracts of warm-blooded hosts. As a facultative anaerobe, E. coli strain WCHEC025970 has the metabolic flexibility to grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its host-associated habitat.↵↵The ability of this strain to inhabit host environments suggests a specialized niche that may involve complex interactions with host physiology and microbial communities. While specific pathogenicity details are not provided, the traits of E. coli as a genus include roles in digestion and competition with potentially harmful microorganisms within the gut microbiome. Furthermore, the strain's facultative anaerobic nature may confer advantages in diverse microenvironments within the gastrointestinal tract, where oxygen levels can fluctuate significantly. ↵↵Overall, the ecological role of Escherichia coli strain WCHEC025970 within host-associated environments highlights the intricate balance between microbial inhabitants and their hosts, emphasizing the importance of such bacteria in overall gut health and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP036178.1 Bac0017207 Shewanella maritima strain D4-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella maritima 2520507 NZ_CP036200.1 Bac0017208 Verrucomicrobia bacterium S94 Pseudomonadati Verrucomicrobiota Verrucomicrobia bacterium S94 2488809 NZ_CP036201.1 Bac0017209 Xanthomonas oryzae strain NCPPB4346 "Xanthomonas oryzae strain NCPPB4346 is a Gram-negative, rod-shaped bacterium that inhabits a host-associated environment, demonstrating its specialization in living systems. This strain is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes, which may influence its distribution and interactions within host organisms. ↵↵As a member of the Xanthomonadaceae family, Xanthomonas oryzae is known for its role in plant-associated ecosystems, where it may engage in complex interactions with host plants. The host-associated habitat suggests that this strain may be adapted to specific niches within plant tissues, potentially allowing it to exploit nutrient sources efficiently. ↵↵The aerobe characteristic of Xanthomonas oryzae strain NCPPB4346 may confer advantages in environments where oxygen is readily available, enabling it to thrive in the vascular systems of plants or other oxygenated microenvironments. This adaptation could facilitate its survival and persistence, possibly influencing the dynamics of microbial communities associated with host plants. Understanding the ecological role of this strain within its habitat could provide insights into the broader interactions between microbial pathogens and their plant hosts, highlighting the importance of oxygen availability in shaping these relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas oryzae Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living 347 NZ_CP036253.1 Bac0017210 Akkermansia muciniphila strain 139 "Akkermansia muciniphila strain 139 is a Gram-negative, anaerobic bacterium characterized by its cocci shape and tendency to occur in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological temperature of its host environment. As a host-associated microbe, Akkermansia muciniphila strain 139 is typically found within the gastrointestinal tract, where it is believed to play a role in mucin degradation and gut health.↵↵The anaerobic nature of this strain suggests that it performs metabolic processes in the absence of oxygen, which is consistent with its habitat within the oxygen-poor environments of the intestines. The presence of Akkermansia muciniphila in the gut microbiome has been linked to various health outcomes, though specific interactions and effects require further study.↵↵Notably, the ability of Akkermansia muciniphila to utilize mucin as a primary carbon source may contribute to the maintenance of gut barrier integrity and overall microbiome stability. This unique capacity highlights its potential significance in the interplay between host physiology and microbial ecology, suggesting that Akkermansia muciniphila strain 139 may serve as a key player in promoting host health through its metabolic activities within the gastrointestinal ecosystem." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 NZ_CP036293.1 Bac0017211 Egibacter rhizosphaerae strain EGI 80759 Bacillati Actinomycetota Nitriliruptoria Egibacterales Egibacteraceae Egibacter Egibacter rhizosphaerae 1670831 NZ_CP036402.1 Bac0017212 Citrobacter sp. ABFQG Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. ABFQG 2529121 NZ_CP036435.1 Bac0017213 Streptomonospora litoralis strain M2 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Streptomonospora Streptomonospora litoralis 2498135 NZ_CP036455.1 Bac0017214 Thermoactinomyces vulgaris strain CDF "Thermoactinomyces vulgaris strain CDF is a Gram-positive, filamentous bacterium that thrives in aerobic environments, specifically within decaying straw and manure. This organism is notable for its ability to decompose complex organic materials, contributing to nutrient cycling in terrestrial ecosystems. The filamentous morphology of T. vulgaris strain CDF suggests a potential for forming extensive networks, which may enhance its capacity for substrate colonization and degradation.↵↵In its natural habitat, T. vulgaris strain CDF likely plays a significant role in the breakdown of lignocellulosic materials, facilitating the conversion of organic waste into simpler compounds that can be utilized by other microorganisms. The aerobic nature of this bacterium indicates that it may engage in oxidative metabolism, further supporting its function in the decomposition process.↵↵Additionally, the presence of T. vulgaris strain CDF in environments rich in organic matter, such as decaying straw and manure, underscores its ecological importance in promoting soil health and fertility. This strain's filamentous growth pattern may also influence soil structure and aeration, ultimately contributing to the overall dynamics of microbial communities within its habitat. The interactions that occur between T. vulgaris strain CDF and other soil microorganisms could provide insights into the complexities of microbial ecology in decomposing environments." Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Thermoactinomyces Thermoactinomyces vulgaris positive Filamentous aerobic thermophilic decaying straw; manure 2026 NZ_CP036487.1 Bac0017215 Bacteroides fragilis strain DCMOUH0018B "Bacteroides fragilis strain DCMOUH0018B is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a chemoorganotroph, indicating that it derives energy from organic compounds, and it thrives in anaerobic environments, making it well-suited for growth in host-associated habitats. The optimal growth temperature for this strain is 37.0°C, which corresponds to the physiological temperature of many mammalian hosts.↵↵As a member of the Bacteroides genus, strain DCMOUH0018B is likely to play a role in the complex microbial communities found within the gastrointestinal tracts of its hosts. These communities are essential for various biological processes, including digestion and the synthesis of certain vitamins. The anaerobic nature of Bacteroides fragilis underscores its adaptation to environments such as the intestines, where oxygen levels are low and competition with aerobic microbes is minimized.↵↵The presence of Bacteroides fragilis in the gut may contribute to the maintenance of gut homeostasis and the modulation of the immune system, although strain-specific behaviors and interactions with the host are not detailed in the available traits. An interesting ecological insight about strain DCMOUH0018B is its potential role in the degradation of complex carbohydrates, which can influence nutrient absorption and overall gut health in its host organisms." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 NZ_CP036542.1 Bac0017216 Bacteroides fragilis strain DCMOUH0042B "Bacteroides fragilis strain DCMOUH0042B is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as an anaerobic chemoorganotroph. This strain thrives optimally at 37.0 degrees Celsius, which aligns with the human body temperature, suggesting its adaptation to a host-associated habitat. ↵↵As a member of the Bacteroides genus, this strain is likely to play a significant role in the gut microbiome, where it may contribute to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are important for host health. The anaerobic nature of Bacteroides fragilis strain DCMOUH0042B indicates that it thrives in low-oxygen environments, such as the intestinal tract, where it may engage in symbiotic relationships with its host.↵↵Moreover, the ability of this strain to utilize organic compounds for energy underscores its potential role in nutrient cycling within the gut ecosystem. The specific metabolic pathways utilized by Bacteroides fragilis strain DCMOUH0042B could provide insights into its functional contributions to gut health and its interactions with other microbial species. Understanding these traits may enhance our knowledge of gut microbial ecology and the dynamics of microbial communities in host-associated environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 NZ_CP036552.1 Bac0017217 Bacteroides fragilis strain DCMOUH0067B "Bacteroides fragilis strain DCMOUH0067B is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is known to thrive optimally at a temperature of 37.0°C. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. As an anaerobic organism, B. fragilis strain DCMOUH0067B is capable of growth in environments devoid of oxygen, which aligns with its habitat preference of being host-associated.↵↵Bacteroides species, including this strain, are commonly found in the gastrointestinal tract of humans and other animals, where they play a significant role in the digestion of complex carbohydrates and contribute to the overall health of the host's microbiome. The ability of B. fragilis strain DCMOUH0067B to thrive in anaerobic conditions suggests its potential involvement in maintaining gut homeostasis and influencing metabolic processes within the host. This characteristic may also provide insights into its interactions with the host immune system and its contributions to the fermentation of dietary fibers, ultimately impacting host nutrition and health. Understanding the specific traits and behaviors of this strain could further elucidate its role within the complex microbial communities of the host environment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 NZ_CP036554.1 Bac0017218 Acinetobacter johnsonii strain M19 "Acinetobacter johnsonii strain M19 is a Gram-negative bacterium that thrives as an aerobic organism, primarily identified within the skin microbiome and in guano habitats. This strain is part of the diverse genus Acinetobacter, which is known for its environmental resilience and adaptability. A. johnsonii strain M19, like other members of its genus, may contribute to the microbial diversity of its habitats, potentially influencing local ecological dynamics through its metabolic activities.↵↵The presence of A. johnsonii in the skin microbiome suggests a potential role in maintaining skin health, although the specific interactions and contributions of this strain within the microbiome remain to be elucidated. Its isolation from guano indicates an ability to colonize varied environments, demonstrating metabolic versatility. This adaptation might reflect a broader ecological strategy employed by Acinetobacter species to exploit different niches, further highlighting the ecological significance of microorganisms in nutrient cycling and habitat interactions.↵↵In summary, Acinetobacter johnsonii strain M19 exemplifies a microbe that not only occupies specific ecological niches but may also play a role in the complex interactions within microbial communities, potentially influencing both local biodiversity and ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe ATCC skin microbiome; guano 40214 NZ_CP037424.1 Bac0017219 Bacteroides fragilis strain DCMOUH0085B "Bacteroides fragilis strain DCMOUH0085B is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoorganotroph, indicating its ability to derive energy from organic compounds, and it thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As an anaerobic organism, B. fragilis strain DCMOUH0085B is adapted to environments devoid of oxygen, which is characteristic of the gastrointestinal tract where it is commonly found.↵↵The association of B. fragilis with host organisms highlights its potential role in the complex microbial ecosystems of the gut, where it may contribute to various metabolic processes and the maintenance of gut homeostasis. The ability to exist in a single-cell arrangement may also confer advantages in adaptability and survival within the competitive environment of the host microbiome. Further exploration of this strain's specific interactions and contributions to the host's health and disease could provide valuable insights into the dynamics of gut microbiota and its influence on overall host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 NZ_CP037440.1 Bac0017220 Klebsiella sp. PO552 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. PO552 1972757 NZ_CP037442.1 Bac0017221 Citrobacter arsenatis strain LY-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter arsenatis 2546350 NZ_CP037862.1 Bac0017222 Hydrogenophaga pseudoflava strain DSM 1084 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga pseudoflava 47421 NZ_CP037867.1 Bac0017223 Shigella flexneri 5a str. M90T "Shigella flexneri 5a str. M90T is a Gram-negative, non-sporulating rod-shaped bacterium that typically exists in pairs or singles and is classified as a facultative anaerobe. This strain thrives at an optimal temperature of 37.0°C, indicating its adaptation to the human body, where it is primarily host-associated. As a chemoorganotroph, S. flexneri 5a str. M90T derives energy from organic compounds, which aligns with its ecological niche within the gastrointestinal tract of its host.↵↵The facultative anaerobic nature of this microbe allows it to survive in both aerobic and anaerobic environments, enhancing its adaptability to varying conditions within the host. This metabolic versatility is particularly significant as it may facilitate the bacterium's persistence and growth in the nutrient-rich environment of the intestines, where it can compete with other microbial inhabitants.↵↵Given its specific traits and host-associated habitat, S. flexneri 5a str. M90T provides a valuable model for understanding the dynamics of microbial behavior in the human gut, especially in relation to its interactions with both host cells and other microbial species. This insight underscores the importance of studying such organisms to unravel their roles in health and disease, particularly in the context of intestinal microbiota composition and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 1086030 NZ_CP037923.1 Bac0017224 Flavobacterium nackdongense strain GS13 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium nackdongense 2547394 NZ_CP037933.1 Bac0017225 Marinobacter sp. JH2 strain sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. JH2 2547598 NZ_CP037934.1 Bac0017226 Periweissella cryptocerci strain 26KH-42 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Periweissella Periweissella cryptocerci 2506420 NZ_CP037940.1 Bac0017227 Escherichia coli strain CFSAN027346 "Escherichia coli strain CFSAN027346 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli strain CFSAN027346 can utilize oxygen when available, but it also possesses the capability to grow in anaerobic environments, which enhances its versatility in diverse ecological niches.↵↵The host-associated habitat of this strain suggests a potential adaptation to living within specific biological systems, possibly including the intestines of mammals, where E. coli is commonly found. The ability to survive in both aerobic and anaerobic conditions further indicates its resilience and adaptability to varying environmental conditions within its host.↵↵Given its specific traits, E. coli strain CFSAN027346 may play a role in the complex microbial communities that contribute to host health or disease dynamics. This strain exemplifies the diverse physiological adaptations of E. coli, allowing it to occupy various ecological roles, from commensalism to potential pathogenicity, depending on the context of its environment and host interactions. Further research into this strain could provide insights into its specific functions and interactions within its host ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP037945.1 Bac0017228 Herbaspirillum huttiense strain NFYY 53159 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum huttiense aerobic 863372 NZ_CP037993.1 Bac0017229 Acinetobacter haemolyticus strain TJR01 "Acinetobacter haemolyticus strain TJR01 is a Gram-negative, aerobic bacterium characterized by its capacity to thrive in oxygen-rich environments. This strain is part of the Acinetobacter genus, which is known for its diverse metabolic capabilities and adaptability to various ecological niches. The Gram-negative nature of A. haemolyticus indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which can confer certain advantages in terms of resistance to environmental stresses and antimicrobial agents.↵↵As an aerobic organism, strain TJR01 relies on oxygen for its metabolic processes, which positions it well in environments where oxygen is readily available. The implications of its aerobic lifestyle may extend to its interactions with other microorganisms in the ecosystem, potentially influencing community dynamics and biogeochemical cycles.↵↵Further studies into the specific metabolic pathways and ecological roles of Acinetobacter haemolyticus strain TJR01 could provide valuable insights into its potential applications in bioremediation or as a model organism for understanding aerobic metabolism in Gram-negative bacteria. The strain's adaptability to oxygen-rich environments may also reveal strategies for survival and competition in diverse habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 NZ_CP038011.1 Bac0017230 Rhodococcus ruber strain R1 "Rhodococcus ruber strain R1 is a Gram-positive bacterium primarily found in soil environments. This strain is part of the genus Rhodococcus, which is known for its diverse metabolic capabilities and adaptability to various ecological niches. The presence of this microbe in soil suggests its potential role in biogeochemical cycles, particularly in the degradation of organic compounds.↵↵Rhodococcus species, including strain R1, exhibit notable resilience in varying soil conditions, which may be attributed to their robust cell wall structure characteristic of Gram-positive bacteria. This structural feature may confer advantages in withstanding environmental stresses such as desiccation or fluctuating nutrient availability. ↵↵In addition to its survival strategies, Rhodococcus ruber strain R1 is likely to contribute to soil health and fertility through its interactions with organic matter. These interactions can facilitate the breakdown of complex organic substrates, thereby enhancing nutrient availability for other soil microorganisms and plants. The metabolic versatility of this strain may also imply its involvement in the bioremediation processes, where it could assist in the detoxification of pollutants.↵↵Overall, the ecological role of Rhodococcus ruber strain R1 in soil ecosystems underscores the importance of microbial diversity in maintaining soil quality and function, highlighting its potential contributions to sustainable agricultural practices and environmental management." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus ruber positive Soil 1830 NZ_CP038032.2 Bac0017231 Saccharomonospora xinjiangensis strain 31sw Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharomonospora Saccharomonospora xinjiangensis 29 mesophilic 75294 NZ_CP038101.1 Bac0017232 Actinobacillus indolicus strain AIFJ1607 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus indolicus 51049 NZ_CP038145.1 Bac0017233 Streptomyces sp. S501 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. S501 2420135 NZ_CP038146.1 Bac0017234 Paraburkholderia pallida strain 7MH5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia pallida 2547399 NZ_CP038148.1 Bac0017235 Microbacterium sediminis strain YLB-01 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sediminis 904291 NZ_CP038256.1 Bac0017236 Nocardioides euryhalodurans strain MMS17-SY117 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides euryhalodurans 2518370 NZ_CP038267.1 Bac0017237 Pseudomonas fluorescens strain LBUM677 "Pseudomonas fluorescens strain LBUM677 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, and it thrives optimally at a temperature of 25.0°C. As an aerobic organism, P. fluorescens strain LBUM677 requires oxygen for its metabolic processes, which aligns with its ecological versatility observed in various habitats.↵↵The adaptability of Pseudomonas fluorescens, including strain LBUM677, to diverse environments underscores its significance in ecological interactions, including soil and water ecosystems. Its ability to function as an aerobe and utilize a range of organic substrates may contribute to its role in nutrient cycling and biodegradation processes. Such traits suggest that this strain could play an important role in maintaining ecological balance and promoting soil health, particularly in environments where organic matter decomposition is crucial for ecosystem sustainability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_CP038438.1 Bac0017238 Paracoccus liaowanqingii strain 2251 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus liaowanqingii 2560053 NZ_CP038439.1 Bac0017239 Aeromonas hydrophila strain WCX23 "Aeromonas hydrophila strain WCX23 is a Gram-negative, rod-shaped bacterium that typically exhibits diverse arrangements, including chains, pairs, and singles. This strain thrives optimally at 22.0°C and is categorized as a facultative aerobe, allowing it to adapt to varying oxygen levels in its environment. As a heterotrophic organism, A. hydrophila strain WCX23 utilizes organic compounds as its primary energy source, reflecting its ecological versatility.↵↵The habitat of A. hydrophila strain WCX23 is characterized by multiple environments, suggesting its potential presence in various aquatic and terrestrial ecosystems. This adaptability to different habitats may contribute to its resilience and ecological significance in nutrient cycling and organic matter decomposition. Given its metabolic flexibility and diverse morphological forms, A. hydrophila strain WCX23 may play a crucial role in microbial communities, particularly in environments where organic substrates are abundant. Understanding the ecological dynamics and interactions of this strain can provide insights into its contributions to ecosystem health and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila Negative Rod Yes 1 2 Facultative aerobe 22 Heterotroph Mesophilic Multiple Free living Chains - Pairs - Singles 644 NZ_CP038463.1 Bac0017240 Rhodophyticola sp. CCM32 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Rhodophyticola Rhodophyticola sp. CCM32 2916397 NZ_CP038492.1 Bac0017241 Acinetobacter baumannii strain CIAT758 "Acinetobacter baumannii strain CIAT758 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which may contribute to its adaptability in various environments. Optimal growth occurs at a temperature of 37.0°C, a condition that aligns with the temperature of the human body, suggesting potential associations with warm-blooded hosts.↵↵As an aerobic organism, A. baumannii strain CIAT758 requires oxygen for survival and metabolic processes, positioning it within diverse habitats where oxygen is readily available. This characteristic allows the strain to occupy a wide range of ecological niches, from soil and water environments to clinical settings, where it may interact with various organic compounds.↵↵The ability of A. baumannii strains to thrive in multiple habitats, combined with their metabolic versatility, underscores their ecological significance and potential for survival in fluctuating environments. This adaptability may play a role in their persistence and resilience in both natural and anthropogenic ecosystems, highlighting the importance of understanding their biological traits for environmental and health-related research." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP038500.1 Bac0017242 Salmonella enterica subsp. enterica serovar Senftenberg strain "Salmonella enterica subsp. enterica serovar Senftenberg strain is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the tendency to form chains or exist as singles. It thrives optimally at 37.0°C, which aligns with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a chemoorganotroph, this strain derives its energy from organic compounds, reflecting its ecological role as a potential inhabitant of the gastrointestinal tract of various hosts.↵↵The microaerophilic nature of Salmonella enterica Senftenberg suggests that it requires reduced levels of oxygen for growth, which may influence its survival and metabolic activities in the oxygen-limited environments typical of the intestinal tract. Its morphological characteristics and energy metabolism are consistent with the adaptation strategies employed by many enteric bacteria that colonize specific niches within host organisms.↵↵Understanding the ecological dynamics of Salmonella enterica Senftenberg can provide insights into its interactions within the microbiome of its host, potentially influencing both microbial community structure and host health. The ability of this strain to exist in chains may also facilitate its colonization and persistence in host environments, highlighting its adaptive strategies in a competitive microbiological landscape." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28150 NZ_CP038593.1 Bac0017243 Arsenophonus nasoniae strain FIN Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Arsenophonus Arsenophonus nasoniae 638 NZ_CP038616.1 Bac0017244 Halobacterium salinarum strain 91-R6 "Halobacterium salinarum strain 91-R6 is a rod-shaped, nonsporulating, Gram-negative archaeon that thrives optimally at a temperature of 50.0°C. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy acquisition. Halobacterium salinarum strain 91-R6 is adapted to specialized habitats, which typically include highly saline environments, such as salt lakes or salt evaporation ponds, where its unique physiological traits allow it to flourish.↵↵As an anaerobe, this strain does not require oxygen for growth, which may confer advantages in its natural habitats, where anoxic conditions can prevail. The adaptation to high salinity and elevated temperatures suggests that strain 91-R6 possesses specific biochemical mechanisms to maintain cellular integrity and metabolic function under extreme conditions. ↵↵The ecological significance of Halobacterium salinarum strain 91-R6 lies in its potential role in biogeochemical cycles within saline ecosystems. Its ability to utilize organic matter under anaerobic conditions may contribute to the degradation of organic substrates, influencing nutrient cycling and energy flow within these specialized environments. This unique metabolism not only underscores the organism's ecological adaptability but also highlights the intricate relationships between microbial life and extreme environmental conditions." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum Negative Rod No 1 1 Anaerobe 50 Chemoorganotroph Thermophilic Specialized Free living Nonsporulating 2242 NZ_CP038631.1 Bac0017245 Cupriavidus oxalaticus strain X32 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus oxalaticus 96344 NZ_CP038635.1 Bac0017246 Acinetobacter baumannii strain ACN21 "Acinetobacter baumannii strain ACN21 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in diverse habitats. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, and it requires oxygen for growth, categorizing it as an aerobe. The optimal growth temperature for strain ACN21 is 37.0°C, which coincides with the physiological temperature of warm-blooded hosts, suggesting a potential adaptability to various environments, including those associated with human activity.↵↵The versatility of Acinetobacter baumannii strain ACN21 to inhabit multiple environments may reflect its resilience and ability to survive under varying conditions, potentially allowing it to persist in both natural and anthropogenic ecosystems. This characteristic underlines the importance of understanding its ecological interactions and the implications for microbial dynamics in different settings. Such traits may also inform future research on how this strain responds to environmental stresses and its role within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP038646.1 Bac0017247 Escherichia coli strain PF9285 "Escherichia coli strain PF9285 is a Gram-negative, rod-shaped bacterium that typically exhibits a cellular arrangement of pairs and singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain PF9285 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, allowing it to exploit various niches within the host organism.↵↵The bacterium's Gram-negative nature is indicative of its structural characteristics, including a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with the host immune system. The ability to exist in pairs and singles may also reflect its reproductive strategies or responses to environmental pressures.↵↵Understanding the metabolic capabilities and environmental adaptations of E. coli strain PF9285 can provide insights into its role within host-associated ecosystems. Given its facultative anaerobic nature, this strain may contribute to the microbial diversity and metabolic processes in the gastrointestinal tract, where it can play a role in nutrient absorption and fermentation. Further investigation into its specific interactions within the host environment may yield valuable information regarding its ecological functions and potential impacts on host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP038793.1 Bac0017248 Citrobacter freundii strain Upstream_1 "Citrobacter freundii strain Upstream_1 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and nonsporulating nature. This strain has been isolated from diverse environments, including hospital sewage, the intestinal tract, sewage systems, soil, and surface waters, indicating its versatility and adaptability to various ecological niches.↵↵As a facultative anaerobe, Citrobacter freundii strain Upstream_1 is capable of surviving in both aerobic and anaerobic conditions, allowing it to thrive in environments where oxygen availability fluctuates. The bacterium's presence in hospital sewage suggests a potential association with human activity, although the specific interactions in such environments require careful study to draw any conclusions regarding its role.↵↵The ability of C. freundii to inhabit both natural and anthropogenic environments, such as soil and surface waters, points to its ecological significance in nutrient cycling and microbial community dynamics. Its presence in these diverse habitats may influence local microbial populations and contribute to the degradation of organic matter, further emphasizing the importance of understanding its ecological role in both natural ecosystems and human-impacted environments. This adaptability underscores the need for ongoing research into its biological interactions and environmental impact." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NZ_CP038856.1 Bac0017249 Salmonella enterica subsp. enterica serovar Goldcoast strain "Salmonella enterica subsp. enterica serovar Goldcoast strain is a Gram-negative, spirilla-shaped bacterium that typically occurs in singles or chains. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds as an energy source. It has an optimal growth temperature of 37.0°C, which corresponds with the typical body temperature of its host organisms. Salmonella enterica subsp. enterica serovar Goldcoast is microaerophilic, meaning it requires lower levels of oxygen than are present in the atmosphere for optimal growth.↵↵The habitat of this strain is primarily host-associated, suggesting a close relationship with its biological hosts, which could include various animals and potentially humans. Given its microaerophilic nature and specific habitat preferences, S. enterica serovar Goldcoast may play a role in the complex microbial communities found within host gastrointestinal tracts, contributing to the dynamics of host-microbe interactions. This adaptation to host-associated environments highlights the importance of understanding the ecological roles of specific Salmonella strains, which may influence both microbial diversity and the health of the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 260678 NZ_CP039169.1 Bac0017250 Sphingomonas sp. PAMC26645 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. PAMC26645 2565555 NZ_CP039249.1 Bac0017251 Hydrogenophaga sp. PAMC20947 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga sp. PAMC20947 2565558 NZ_CP039252.1 Bac0017252 Rhodococcus sp. PAMC28707 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. PAMC28707 2565560 NZ_CP039253.1 Bac0017253 Rhodococcus sp. PAMC28705 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. PAMC28705 2565561 NZ_CP039254.1 Bac0017254 Leptospira interrogans strain FMAS_AW1 "Leptospira interrogans strain FMAS_AW1 is a Gram-negative bacterium characterized by its spirilla shape and aerobic metabolism. This strain thrives optimally at a temperature of 28.0°C, suggesting an adaptation to specific environmental conditions that may be present in its associated host. As an aerobe, it requires oxygen for growth, which indicates its potential role in aerobic metabolic processes within its habitat. ↵↵The habitat of L. interrogans strain FMAS_AW1 is host-associated, implying a close relationship with its host organism, which could influence its ecological niche and survival strategies. This association may facilitate the bacterium's adaptation to the host's physiological environment, potentially impacting its growth dynamics and metabolic pathways.↵↵Given the traits of this strain, its ecological role may involve interactions within the host's microbiota or engaging in symbiotic or pathogenic relationships, although specifics regarding these interactions remain to be elucidated. The preference for an environment with optimal temperature and oxygen levels may also reflect its adaptability to various host-associated environments, contributing to its survival and proliferation in diverse ecological contexts. This adaptability highlights the importance of temperature and oxygen availability in shaping the ecological roles of host-associated bacteria like L. interrogans strain FMAS_AW1." Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira interrogans Negative Spirilla No 1 2 Aerobe 28 Mesophilic HostAssociated 173 NZ_CP039283.1 Bac0017255 Cellulomonas shaoxiangyii strain Z28 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas shaoxiangyii 2566013 NZ_CP039291.1 Bac0017256 Citrobacter portucalensis strain Effluent_1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter portucalensis 1639133 NZ_CP039327.1 Bac0017257 Ralstonia pseudosolanacearum strain UW386 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pseudosolanacearum 1310165 NZ_CP039339.1 Bac0017258 Pseudomonas putida strain 1290 "Pseudomonas putida strain 1290 is a Gram-negative, rod-shaped bacterium that exists as single cells and is nonsporulating. This strain is classified as a heterotroph, indicating its reliance on organic compounds as energy sources, which aligns with its natural habitat in soil and wastewater environments. Pseudomonas putida is known for its metabolic versatility, allowing it to thrive under varying conditions, including both aerobic and anaerobic environments due to its facultative oxygen requirement.↵↵The ecological significance of Pseudomonas putida strain 1290 lies in its potential role in bioremediation. Given its adaptation to nutrient-rich wastewater environments, this strain may possess the capacity to degrade a variety of environmental pollutants, contributing to soil health and ecosystem functionality. Furthermore, its ability to utilize diverse organic compounds may facilitate interactions with other microorganisms in its habitat, enhancing nutrient cycling and promoting microbial community dynamics. As such, Pseudomonas putida strain 1290 exemplifies a model organism for studying microbial processes in contaminated environments and offers insights into the ecological roles of bacteria in waste management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP039372.1 Bac0017259 Halomicrobium mukohataei strain JP60 "Halomicrobium mukohataei strain JP60 is a rod-shaped, facultatively anaerobic microbe that predominantly exists as single cells. This strain thrives optimally at a temperature of 45.0 °C, indicating a preference for moderately high thermal environments. The specialized habitat of Halomicrobium mukohataei strain JP60 suggests an adaptation to unique ecological niches, likely characterized by elevated salinity or specific chemical compositions, although the exact nature of its habitat is not specified.↵↵The facultative oxygen requirement of this strain allows it to adapt to varying oxygen conditions, providing a competitive advantage in environments where oxygen availability may fluctuate. This adaptability may facilitate its survival in specialized habitats that experience transient changes in redox potential, enhancing its ecological resilience.↵↵Overall, the distinct traits of Halomicrobium mukohataei strain JP60 position it as a potentially significant organism within its specialized habitat, likely contributing to biogeochemical processes in extreme environments. Further studies could elucidate its roles in microbial community dynamics and its functional capabilities within such ecosystems." Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium mukohataei Rod Yes 1 1 Facultative 45 Mesophilic Specialized Free living Singles 57705 NZ_CP039375.1 Bac0017260 Muribaculum gordoncarteri strain TLL-A4 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculum Muribaculum gordoncarteri No 1 5 Chemoheterotroph Multiple Nonsporulating 2530390 NZ_CP039395.1 Bac0017261 Duncaniella dubosii strain H5 "Duncaniella dubosii strain H5 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic environments, specifically within the intestinal microflora of animals. As a member of the gut microbiome, this strain likely plays a role in the complex interactions that occur within the gastrointestinal tract, contributing to the digestion of organic materials and influencing the overall health of the host organism. ↵↵While the specific ecological functions of D. dubosii strain H5 within its habitat are not fully elucidated, its adaptation to an anaerobic lifestyle suggests it may participate in fermentation processes, potentially aiding in the breakdown of dietary components that are otherwise indigestible by the host. The presence of such a microbe in the intestinal ecosystem underscores the diversity of microbial life that coexists within animal hosts and highlights the importance of anaerobic bacteria in maintaining gut health and homeostasis. Further research may reveal additional insights into its functional roles and interactions with other microbial species in the gut environment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Duncaniella Duncaniella dubosii Negative Rod No 1 Anaerobic Chemoheterotroph Animal Intestinal Microflora 2518971 NZ_CP039399.1 Bac0017262 Acetobacteraceae bacterium strain 880 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacteraceae bacterium 1909293 NZ_CP039459.1 Bac0017263 Acetobacteraceae bacterium strain 868 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacteraceae bacterium 1909293 NZ_CP039460.1 Bac0017264 Streptococcus suis strain WUSS351 "Streptococcus suis strain WUSS351 is a Gram-positive cocci bacterium that typically forms chains, pairs, and singles. This strain thrives optimally at a temperature of 37.0°C, suggesting a preference for conditions similar to those found in warm-blooded hosts. As a facultative anaerobe, S. suis strain WUSS351 can grow in both aerobic and anaerobic environments, which may contribute to its adaptability in diverse ecological niches.↵↵The specialized habitat of this strain indicates a potential association with specific hosts or environmental conditions, although the details of its ecological interactions remain to be elucidated. The ability to exist in various arrangements—whether in chains, pairs, or singly—may facilitate its survival and colonization in these specialized environments.↵↵Overall, the traits of S. suis strain WUSS351 highlight its potential adaptability and resilience, which may play a crucial role in its ecological success and interactions within its niche. Further research could provide insights into the specific environments that support its growth and the implications for its ecological role." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_CP039462.1 Bac0017265 Salmonella enterica subsp. enterica serovar Bareilly str. "Salmonella enterica subsp. enterica serovar Bareilly is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This microbe is a chemoorganotroph, utilizing organic compounds as its energy source, and it thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts. ↵↵S. enterica serovar Bareilly is primarily found in host-associated habitats, indicating its association with animal or human hosts, which may play a role in its ecological dynamics and potential interactions within the host microbiome. Its microaerophilic oxygen requirement suggests that it thrives in environments where oxygen levels are lower than atmospheric conditions, potentially influencing its ecological niches and interactions with other microbial communities.↵↵The specific adaptations of S. enterica serovar Bareilly to a microaerophilic environment and its association with hosts highlight the complex interdependencies between microbial life and host organisms. Further exploration of its ecological role could provide insights into its contributions to host health and disease dynamics, considering the intricate relationships that exist within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1208623 NZ_CP039463.1 Bac0017266 Salmonella enterica subsp. enterica serovar Worthington strain "Salmonella enterica subsp. enterica serovar Worthington strain is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as singles. This strain exhibits a microaerophilic oxygen requirement, indicating that it thrives in environments with reduced oxygen levels, which is consistent with its association with host organisms. Its optimal growth temperature is 37.0°C, aligning with the body temperature of many warm-blooded hosts. As a chemoorganotroph, this strain relies on organic compounds as its energy source, further supporting its specialized habitat within host-associated environments.↵↵The ecological implications of this strain suggest a potential adaptability to specific niches within host organisms, where it may exploit available organic substrates. This adaptation may facilitate its survival and proliferation in microenvironments with fluctuating oxygen levels, highlighting the intricate relationship between Salmonella enterica serovar Worthington and its host. Understanding such traits can provide insights into the microbe’s role within its ecological context, particularly in relation to host interactions and nutrient cycling." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1160769 NZ_CP039509.1 Bac0017267 Duncaniella sp. C9 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Duncaniella Duncaniella sp. C9 2530392 NZ_CP039547.1 Bac0017268 Azospirillum sp. TSA2s Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum sp. TSA2s 709810 NZ_CP039643.1 Bac0017269 Phreatobacter stygius strain KCTC 52518 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phreatobacteraceae Phreatobacter Phreatobacter stygius 1940610 NZ_CP039690.1 Bac0017270 Agrobacterium larrymoorei strain CFBP5473 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium larrymoorei 160699 NZ_CP039691.1 Bac0017271 Bacillus thuringiensis strain BT-59 "Bacillus thuringiensis strain BT-59 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate and thrive in host-associated environments. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, allowing it to adapt to diverse ecological niches within its host environments. The ability to form spores is a significant survival strategy, enabling BT-59 to withstand adverse conditions and persist in various habitats.↵↵This strain is a member of the Bacillus genus, which is renowned for its ecological roles in soil and plant-associated environments, where it may contribute to nutrient cycling and microbial community dynamics. The host-associated nature of BT-59 suggests that it may have specific interactions with its host organisms, potentially influencing their health or contributing to their microbiomes. While further research would be necessary to elucidate the precise nature of these interactions, the facultative anaerobic metabolism of BT-59 may enable it to exploit various metabolic pathways depending on the availability of oxygen within its host-associated habitat.↵↵Understanding the traits of Bacillus thuringiensis strain BT-59 not only highlights its adaptability and ecological relevance but also emphasizes the importance of studying host-associated microbes in the context of broader microbial ecology and their potential roles in symbiotic relationships." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP039723.1 Bac0017272 Staphylococcus pseudintermedius strain MAD401 "Staphylococcus pseudintermedius strain MAD401 is a Gram-positive cocci that typically exhibits a cluster or single arrangement of cells. This microbe is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments, which may facilitate its survival in various host-associated habitats. Notably, this strain has an optimal growth temperature of 3.0°C, suggesting that it may be well-adapted to cooler environments, potentially influencing its distribution and ecological roles in host organisms.↵↵Given its association with hosts, S. pseudintermedius strain MAD401 may play a complex role in the microbial communities residing within animal hosts, potentially impacting both health and disease dynamics. The ability to grow under varying oxygen conditions may confer a competitive advantage in the diverse microbiomes of mammals, where fluctuations in oxygen levels can occur due to metabolic activities of the host or other microorganisms. Understanding the ecological niche and functional capacities of this strain may provide insights into its interactions within host-associated environments and its potential implications for animal health management." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 283734 NZ_CP039742.1 Bac0017273 Staphylococcus pseudintermedius strain MAD627 "Staphylococcus pseudintermedius strain MAD627 is a Gram-positive, cocci-shaped bacterium that typically forms clusters or singles. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth conditions for S. pseudintermedius MAD627 are observed at a temperature of 3.0°C, suggesting a potential adaptability to cooler habitats, which may include specific host-associated environments.↵↵As a member of the Staphylococcus genus, S. pseudintermedius is primarily associated with animal hosts, indicating a likely ecological role in the microbiota of mammals. This characteristic emphasizes its potential significance in the context of host-microbe interactions, particularly in the maintenance of skin and mucosal health, where it may contribute to the balance of microbial communities.↵↵Understanding the environmental and physiological traits of S. pseudintermedius strain MAD627 could provide insights into its ecological niche, especially in cooler climates or in association with specific animal hosts. Further studies could elucidate its interactions within host microbiomes and its responses to environmental stresses, which are critical for understanding the broader implications of its presence in various ecological settings." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 283734 NZ_CP039743.1 Bac0017274 Staphylococcus pseudintermedius strain ME4692 "Staphylococcus pseudintermedius strain ME4692 is a Gram-positive cocci bacterium that typically forms clusters or singles. This strain is facultatively anaerobic, suggesting it can thrive in both aerobic and anaerobic environments, which is characteristic of many Staphylococcus species. Notably, S. pseudintermedius is often found in host-associated habitats, indicating a close relationship with animal hosts, particularly in domestic pets such as dogs.↵↵The optimal growth temperature for strain ME4692 is approximately 30°C, which aligns with the temperature range commonly encountered in mammalian hosts. This thermal preference may facilitate its survival and proliferation within the warm, nutrient-rich environments provided by its hosts. ↵↵Given its facultative nature and association with animal hosts, S. pseudintermedius strain ME4692 likely plays a role in the complex microbial communities present on the skin and mucous membranes of these animals. Understanding its ecological niche can provide insights into the dynamics of host-associated microbiomes and the potential implications for animal health, particularly in terms of symbiotic relationships and opportunistic infections. This highlights the importance of studying not only the pathogenic potential of such microbes but also their roles in maintaining microbial balance in host-associated environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 283734 NZ_CP039747.1 Bac0017275 Bacillus subtilis strain NRS 231 "Bacillus subtilis strain NRS 231 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, allowing it to withstand adverse environmental conditions. This strain optimally grows at a temperature of 25.0°C and is classified as facultatively anaerobic, indicating that it can thrive in both aerobic and anaerobic environments. As a host-associated microbe, B. subtilis NRS 231 plays a potential role in the microbiota of its associated hosts, contributing to various biological processes, such as nutrient cycling and the maintenance of microbial diversity.↵↵The sporulation capability of this strain is particularly noteworthy, as it allows B. subtilis NRS 231 to enter a dormant state, surviving extreme conditions that would otherwise be detrimental to non-sporulating cells. This trait is critical for its resilience in fluctuating habitats and may facilitate its persistence within host environments. Moreover, the facultative nature of this bacterium suggests an adaptive advantage, enabling it to exploit a range of ecological niches depending on oxygen availability.↵↵Overall, the unique combination of its Gram-positive structure, rod shape, sporulation ability, and adaptability to varying oxygen levels positions Bacillus subtilis strain NRS 231 as a significant organism in host-associated microbial communities, potentially influencing the health and stability of its ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NZ_CP039755.1 Bac0017276 Ligilactobacillus animalis strain LL1 "Ligilactobacillus animalis strain LL1 is a Gram-positive, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain belongs to the genus Ligilactobacillus, which is known for its role in various fermentation processes and its presence in the gastrointestinal tracts of animals. As a facultative anaerobe, Ligilactobacillus animalis strain LL1 can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels in its habitat.↵↵In terms of its morphological characteristics, the rod shape of this bacterium is typical of many lactic acid bacteria, which play important roles in food fermentation and preservation. The Gram-positive nature of strain LL1 indicates a thick peptidoglycan layer in its cell wall, contributing to its structural integrity and influencing its interactions with the surrounding environment.↵↵Given its metabolic versatility, Ligilactobacillus animalis strain LL1 may contribute to the maintenance of gut health in host organisms by participating in the fermentation of dietary carbohydrates and producing beneficial metabolites, such as lactic acid. This metabolic activity could potentially play a role in modulating the gut microbiota composition and enhancing the overall health of the host. Understanding the specific functions and interactions of this strain within its ecological niche could provide valuable insights into its applications in probiotics and fermentation technologies." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus animalis Positive Rod Facultative anaerobe 1605 NZ_CP039849.1 Bac0017277 Salinimonas iocasae strain KX18D6 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Salinimonas Salinimonas iocasae 2572577 NZ_CP039852.1 Bac0017278 Neisseria subflava strain ATCC 49275 "Neisseria subflava strain ATCC 49275 is a Gram-negative bacterium characterized by its distinct morphology and biochemical properties. This strain belongs to the genus Neisseria, which is primarily known for its association with the human microbiome. N. subflava is notable for its non-pathogenic status and is often found in the oral cavity and upper respiratory tract, contributing to the complex microbial communities in these niches.↵↵As a member of the Neisseria genus, N. subflava exhibits typical Gram-negative features, including a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structural composition not only influences the bacterium's staining characteristics but also plays a role in its interactions with the host environment and other microbial species. The strain is typically characterized by its oxidase-positive reaction, which further aids in its identification and classification within microbial ecology studies.↵↵The presence of N. subflava in the human microbiome highlights its potential role in maintaining microbial balance and possibly inhibiting the colonization of more pathogenic organisms. By occupying ecological niches within the oral and respiratory tracts, N. subflava may contribute to the overall health of the host by participating in microbial competition and modulating local immune responses. Understanding the dynamics of N. subflava within these environments could provide insights into the complex interplay between commensal bacteria and host health." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria subflava negative 28449 NZ_CP039887.1 Bac0017279 Agrobacterium tumefaciens strain CFBP5499 "Agrobacterium tumefaciens strain CFBP5499 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 25.0°C. This strain is classified as an aerobic organism, indicating that it requires oxygen for its metabolic processes. ↵↵A. tumefaciens is known for its diverse habitat, thriving in various environments, which suggests a degree of ecological versatility. Its ability to adapt to multiple habitats may be attributed to its metabolic flexibility and interactions with a wide range of plant hosts. This strain, like other members of the Agrobacterium genus, is recognized for its role in genetic transformation of plants, a process that can lead to crown gall disease. However, specific pathogenicity or ecological roles of strain CFBP5499 have not been detailed here.↵↵The ecological significance of A. tumefaciens strain CFBP5499 may include its potential use in biotechnological applications, particularly in plant genetic engineering, as well as its contributions to soil health through interactions with plant roots. The adaptability of this strain to different environments underscores its potential as a model organism for studying microbial ecology and plant-microbe interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP039888.1 Bac0017280 Agrobacterium tumefaciens strain CFBP6623 "Agrobacterium tumefaciens strain CFBP6623 is a Gram-negative, rod-shaped bacterium that displays optimal growth at 25.0°C and thrives in aerobic conditions. This strain is part of a widely studied species known for its role in plant-microbe interactions, particularly in the context of genetic transfer to host plants, which is facilitated by its unique capacity to transfer DNA via a plasmid. ↵↵The versatility of A. tumefaciens CFBP6623 allows it to inhabit multiple environments, suggesting its adaptability and potential ubiquity in various ecological niches. This adaptability may play a role in its interactions with a diverse range of plant hosts, as well as its ability to survive in different soil and water conditions. ↵↵In summary, the combination of its Gram-negative classification, rod shape, optimal growth temperature, and aerobic requirements highlights the ecological versatility of Agrobacterium tumefaciens strain CFBP6623, making it a significant organism in both microbial ecology and agricultural biotechnology. Its capacity to thrive in diverse habitats indicates potential roles in soil health and plant productivity, warranting further exploration of its ecological contributions and applications." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP039903.1 Bac0017281 Agrobacterium tumefaciens strain CFBP6625 "Agrobacterium tumefaciens strain CFBP6625 is a Gram-negative, rod-shaped bacterium that thrives in various habitats, displaying an optimal growth temperature of 25.0°C. This strain, like other members of the Agrobacterium genus, is an aerobic organism, requiring oxygen for its metabolic processes. ↵↵The versatility in habitat suggests that A. tumefaciens strain CFBP6625 may play a role in diverse ecological niches, potentially engaging in interactions with a range of plant hosts. This adaptability to multiple environments could facilitate its ability to participate in plant-associated microbial communities, where it may contribute to nutrient cycling or interact with other microorganisms.↵↵The aerobic nature of this strain highlights its requirement for environments rich in oxygen, which may influence its distribution and ecological roles, particularly in soil and rhizosphere settings. Understanding the specific interactions and contributions of A. tumefaciens strain CFBP6625 within its habitats could provide insights into its ecological significance and the broader context of microbial dynamics in plant-associated systems." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP039910.1 Bac0017282 Agrobacterium tumefaciens strain CFBP7129 "Agrobacterium tumefaciens strain CFBP7129 is a Gram-negative, rod-shaped bacterium that thrives as an aerobic organism, with an optimal growth temperature of 25.0°C. This strain is part of a diverse habitat range, which allows it to adapt to various environmental conditions.↵↵As a member of the Agrobacterium genus, A. tumefaciens is notable for its role in plant interactions, particularly in the context of genetic transfer to plant cells. The ability of this strain to flourish in multiple habitats suggests a versatile ecological niche, enabling it to engage in complex relationships with various plant species. ↵↵The aerobic nature of A. tumefaciens strain CFBP7129 indicates its dependence on oxygen for growth, which may influence its distribution and ecological roles in soil and rhizosphere environments. The optimal growth temperature of 25.0°C aligns with temperate climate conditions, potentially facilitating its proliferation in diverse geographical locations.↵↵Overall, the adaptability of Agrobacterium tumefaciens strain CFBP7129 to various habitats and its aerobic metabolism may play a significant role in its interactions with plants, contributing to its utility in biotechnology, particularly in genetic engineering applications. This strain exemplifies the intricate relationships that bacteria can form within ecosystems, influencing both microbial community dynamics and plant health." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP039922.1 Bac0017283 Elizabethkingia sp. 2-6 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia sp. 2-6 2575699 NZ_CP039929.1 Bac0017284 Pseudorhodobacter turbinis strain S12M18 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudorhodobacter Pseudorhodobacter turbinis 2500533 NZ_CP039964.1 Bac0017285 Pseudoduganella umbonata strain DSMZ 26121 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Pseudoduganella Pseudoduganella umbonata 864828 NZ_CP040017.1 Bac0017286 Arthrobacter sp. 24S4-2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. 24S4-2 2575374 NZ_CP040018.1 Bac0017287 Micrococcus luteus strain AS2 "Micrococcus luteus strain AS2 is a Gram-positive coccus that typically forms tetrads and is classified as an aerobic microorganism. This strain is known to inhabit a variety of environments, showcasing its versatility and adaptability in different habitats. The tetrad arrangement of its cells may contribute to its resilience and ability to thrive in aerobic conditions, as this morphology can enhance surface area for gas exchange.↵↵As an aerobe, Micrococcus luteus strain AS2 relies on oxygen for its metabolic processes, which may influence its ecological roles in its natural habitats. The presence of this microbe in diverse environments indicates its potential involvement in various biogeochemical cycles, particularly in those regions where oxygen levels support aerobic life. Notably, Micrococcus species, including strain AS2, are often found on skin surfaces and in soil, suggesting a capacity for survival in both terrestrial and host-associated niches.↵↵The ability of Micrococcus luteus strain AS2 to occupy multiple habitats may reflect its role as a decomposer or in nutrient cycling, which can be essential for maintaining ecological balance. This strain’s adaptability to aerobic environments underscores its importance in understanding microbial diversity and functionality within different ecological contexts." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 NZ_CP040019.1 Bac0017288 Salinivibrio kushneri strain AL184 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Salinivibrio Salinivibrio kushneri 1908198 NZ_CP040021.1 Bac0017289 Acinetobacter baumannii strain VB16141 "Acinetobacter baumannii strain VB16141 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in various habitats. This strain is classified as a chemoheterotroph, indicating that it obtains its energy from organic compounds, which allows it to adapt to diverse ecological niches. Optimal growth occurs at 37.0°C, a temperature that aligns with many mammalian hosts, suggesting a potential association or adaptability to human-related environments. ↵↵As an aerobic organism, A. baumannii strain VB16141 requires oxygen for its metabolic processes, which may influence its distribution in environments with adequate oxygen supply. The ability to inhabit multiple habitats further emphasizes its versatility and resilience in varying conditions, making it an organism of interest in studies regarding microbial survival and adaptation. ↵↵The ecological implications of A. baumannii strain VB16141's traits highlight its potential role in nutrient cycling within its environments, as heterotrophic bacteria are crucial for breaking down organic matter. This strain's adaptability to a range of habitats and its metabolic capabilities may contribute to its persistence in diverse ecological contexts, including those influenced by human activity." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_CP040050.1 Bac0017290 Anaerostipes rhamnosivorans strain 1y2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes rhamnosivorans anaerobic 1229621 NZ_CP040058.1 Bac0017291 Escherichia coli strain A1_181 "Escherichia coli strain A1_181 is a Gram-negative, rod-shaped bacterium that primarily exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, reflecting its adaptation to a host-associated habitat, typical of many E. coli strains. As a facultative anaerobe, E. coli strain A1_181 possesses the metabolic versatility to utilize oxygen when available but can also grow in its absence, enabling it to inhabit various environments within the host.↵↵The ability to exist in pairs or singles may influence its ecological interactions within the host, potentially affecting its colonization and nutrient acquisition strategies. This trait could facilitate both cooperative behaviors and competition with other microbial flora present in the host's microbiome. Understanding the specific adaptations and interactions of E. coli strain A1_181 within its ecological niche may offer insights into its role in the host's health and microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP040067.1 Bac0017292 Trinickia violacea strain DHOD12 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia violacea 2571746 NZ_CP040077.1 Bac0017293 Desulfoglaeba alkanexedens ALDC Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfoglaeba Desulfoglaeba alkanexedens anaerobic 980445 NZ_CP040098.1 Bac0017294 Serratia fonticola strain MS5 "Serratia fonticola strain MS5 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and is classified as a facultative anaerobe. This strain is characterized by its nonsporulating nature, which influences its survival and adaptability in various environments. The capacity to utilize diverse energy sources allows Serratia fonticola strain MS5 to thrive in multiple habitats, suggesting a broad ecological versatility.↵↵As a facultative anaerobe, this microbe can grow in both aerobic and anaerobic conditions, providing it with a competitive advantage in fluctuating environments where oxygen levels may vary. This adaptability not only facilitates its survival but also implies potential roles in nutrient cycling within its habitats. The nonsporulating trait further suggests that the organism relies on alternative survival strategies, such as metabolic flexibility and rapid growth rates, to withstand environmental stresses.↵↵The broad habitat range of Serratia fonticola strain MS5 indicates that it may play a role in diverse ecological contexts, possibly contributing to the degradation of organic matter and influencing microbial community dynamics. Understanding the specific ecological roles and interactions of this strain within different environments could yield insights into its functional contributions to microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia fonticola Negative Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 47917 NZ_CP040182.1 Bac0017295 Staphylococcus aureus strain GD1696 "Staphylococcus aureus strain GD1696 is a Gram-positive cocci bacterium, notable for its ability to form clusters or singles. This strain thrives at an optimal temperature of 3.0°C, indicating a potential adaptation to cooler environments, which may influence its habitat preferences. As a facultative anaerobe, S. aureus GD1696 can grow in both aerobic and anaerobic conditions, allowing it to occupy diverse ecological niches, particularly those associated with hosts.↵↵The host-associated habitat of this strain suggests a close relationship with host organisms, which may provide essential nutrients and a stable environment for growth. Its clustering arrangement may facilitate communication and resource sharing among cells, potentially enhancing its survival and adaptability within host-associated environments.↵↵The ability of S. aureus GD1696 to thrive at lower temperatures while maintaining facultative anaerobic capabilities may provide insights into its ecological role in colder host environments or during specific physiological conditions. This adaptability may also reflect the strain's evolutionary strategies for survival and interaction with host organisms in varying ecological contexts." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_CP040233.2 Bac0017296 Enterococcus faecium strain VB3025 "Enterococcus faecium strain VB3025 is a Gram-positive, coccoid bacterium that exhibits facultative anaerobic metabolism. This strain is notably isolated from fermented mare milk, indicating its association with dairy fermentation processes. Enterococcus faecium species are commonly found in various environments, but strain VB3025's specific habitat suggests a unique adaptation to the microbial community present in fermented dairy products.↵↵As a facultative anaerobe, Enterococcus faecium strain VB3025 can survive and thrive in both aerobic and anaerobic conditions, which may confer advantages in fluctuating oxygen environments typical of fermentation processes. The ability to grow in the absence of oxygen allows this strain to effectively contribute to the fermentation of mare milk, potentially influencing the flavor and preservation of the product.↵↵The ecological role of Enterococcus faecium strain VB3025 in fermented mare milk could involve interactions with other microbial species present in the fermentation ecosystem, enhancing the complexity of microbial dynamics during milk processing. Understanding the traits and behaviors of this strain may provide insights into its utility in dairy fermentation, as well as its potential for influencing the final characteristics of fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040236.1 Bac0017297 Mycobacterium avium subsp. hominissuis strain 101034 "Mycobacterium avium subsp. hominissuis strain 101034 is a Gram-positive, rod-shaped bacterium that exists as single cells and exhibits microaerophilic characteristics, thriving optimally at a temperature of 37.0°C. This strain is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. The habitat of M. avium subsp. hominissuis strain 101034 is primarily host-associated, suggesting a close relationship with host organisms, which may provide essential nutrients and a conducive environment for its growth.↵↵The microaerophilic nature of this strain implies that it can grow in environments with reduced oxygen levels, which may be reflective of its adaptation to specific niches within host organisms. This adaptation may influence its metabolic processes and interactions with the host immune system, although the precise ecological roles and interactions require further investigation. Understanding the conditions under which M. avium subsp. hominissuis strain 101034 thrives could provide insights into its potential ecological impact within host environments and its interactions with other microbial communities." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium Positive Rod No 1 1 Microaerophile 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 439334 NZ_CP040246.1 Bac0017298 Moraxella osloensis strain MOXF1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola osloensis skin 34062 NZ_CP040257.1 Bac0017299 Natrinema versiforme strain BOL5-4 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema versiforme 88724 NZ_CP040331.1 Bac0017300 Stutzerimonas degradans strain PheN2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas degradans 2968968 NZ_CP040460.1 Bac0017301 Enterococcus sp. M190262 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus sp. M190262 2582830 NZ_CP040461.1 Bac0017302 Caminibacter mediatlanticus TB-2 "Caminibacter mediatlanticus TB-2 is a Gram-negative, rod-shaped bacterium characterized by its anaerobic metabolism and non-spore-forming nature. This microbe exhibits optimal growth at a temperature of 45.0°C, indicating a preference for thermophilic conditions. As a strictly anaerobic organism, Caminibacter mediatlanticus TB-2 is adapted to environments devoid of oxygen, which influences its metabolic pathways and ecological niche.↵↵The ability to thrive at elevated temperatures and in anaerobic conditions suggests that Caminibacter mediatlanticus TB-2 may play a role in specific biogeochemical processes, potentially contributing to the breakdown of organic materials or influencing nutrient cycling in its habitat. This thermophilic anaerobe could be significant in environments such as deep-sea hydrothermal vents or geothermal hot springs, where similar temperature and oxygen conditions prevail. Further research into its metabolic capabilities and ecological interactions could provide insights into its role within microbial communities and its potential applications in biotechnology." Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter mediatlanticus Gram-negative rod anaerobic 45 thermophilic non-spore-forming 391592 NZ_CP040463.1 Bac0017303 Blautia sp. SC05B48 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. SC05B48 2479767 NZ_CP040518.1 Bac0017304 Acidipropionibacterium jensenii strain FAM 19038 "Acidipropionibacterium jensenii strain FAM 19038 is a Gram-positive, non-sporulating bacterium classified as a chemoheterotroph, primarily isolated from dairy environments. This strain utilizes organic compounds as its energy source, which aligns with its adaptation to the nutrient-rich conditions typically found in dairy products. ↵↵The ability to thrive in such habitats suggests that A. jensenii strain FAM 19038 may play a role in the fermentation processes associated with dairy, potentially contributing to the flavor and texture profiles of fermented dairy products. Its non-sporulating nature indicates that it relies on stable environmental conditions for survival, which may reflect the specific ecological niches it occupies within dairy matrices. ↵↵The unique biochemical capabilities of A. jensenii strain FAM 19038 may also present opportunities for its application in food biotechnology, particularly in the development of probiotic products or as a biocontrol agent in dairy fermentation. Understanding the metabolic pathways and interactions of this strain within its habitat could provide further insights into its functional roles in dairy ecosystems and its potential benefits in food production." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Acidipropionibacterium Acidipropionibacterium jensenii positive No 1 Chemoheterotroph Dairy isolate Nonsporulating 1749 NZ_CP040635.1 Bac0017305 Natrinema pallidum strain BOL6-1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema pallidum 69527 NZ_CP040638.1 Bac0017306 Salmonella enterica subsp. enterica serovar Enteritidis strain "Salmonella enterica subsp. enterica serovar Enteritidis strain is a Gram-negative bacterium characterized by its spirilla shape and the ability to exist in both single and chain arrangements. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a chemoorganotroph, it derives energy from organic compounds, further emphasizing its dependence on living or decaying organic matter typically found within host environments. ↵↵S. enterica serovar Enteritidis is microaerophilic, requiring reduced levels of oxygen for growth, which is consistent with conditions often present in the intestinal tracts of animals. This oxygen requirement suggests a specialized metabolic capability that allows it to occupy niches where other organisms might not thrive, providing a competitive advantage in its ecological niche. ↵↵The combination of these traits suggests that S. enterica serovar Enteritidis strain is well-adapted to life in host-associated environments, where it may play a role in the complex dynamics of microbial communities within the gastrointestinal tract. Understanding these traits is crucial for comprehending its ecological interactions and potential implications in host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles Human 149539 NZ_CP040644.1 Bac0017307 Salmonella enterica subsp. enterica serovar Rough O:-:- strain "Salmonella enterica subsp. enterica serovar Rough O:-:- strain is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This strain thrives at an optimal temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting a potential adaptation to life within host organisms. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, indicating its reliance on complex substrates that may be available in host environments.↵↵The habitat of Salmonella enterica subsp. enterica serovar Rough O:-:- is notably host-associated, which implies a specific ecological niche that could influence its interaction with host immune systems and microbial communities. The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for optimal growth, a trait often seen in bacteria that inhabit anaerobic or low-oxygen environments within the digestive tracts of animals. ↵↵Overall, the unique combination of traits exhibited by this strain suggests a specialized ecological role, potentially facilitating its survival and proliferation in the dynamic and competitive environments of host-associated microbiomes. Understanding these characteristics may provide insights into the ecological strategies employed by Salmonella enterica in relation to its hosts and associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2579247 NZ_CP040648.1 Bac0017308 Salmonella enterica subsp. enterica serovar 1 "Salmonella enterica subsp. enterica serovar 1 is a Gram-negative bacterium characterized by its spirilla shape and ability to exist as singles or in chains. This microbe optimally thrives at 37.0°C, which corresponds to the average human body temperature, indicating its adaptation for survival in host-associated environments. As a chemoorganotroph, S. enterica subsp. enterica serovar 1 derives its energy from organic compounds, reflecting its metabolic versatility in nutrient-rich habitats.↵↵Importantly, this organism is microaerophilic, requiring reduced levels of oxygen for optimal growth, which is indicative of its ecological niche within host organisms where such conditions may be present. The ability to form chains may provide advantages in colonization and persistence within host environments, facilitating interactions with the host's immune system.↵↵Overall, the traits of S. enterica subsp. enterica serovar 1 highlight its adaptation to a host-associated lifestyle, where it may exploit microaerophilic conditions and organic substrates for energy. This adaptation not only underscores its potential role in host-associated microbiomes but may also influence its interactions with other microbial species in these environments, potentially impacting the overall microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2583588 NZ_CP040653.1 Bac0017309 Lysobacter enzymogenes strain YC36 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter enzymogenes soil 69 NZ_CP040656.1 Bac0017310 Staphylococcus aureus strain D592 "Staphylococcus aureus strain D592 is a Gram-positive cocci bacterium that typically forms clusters or can exist as single cells. This strain is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is primarily associated with host organisms, indicating its adaptation to life within biological hosts, which is a common ecological niche for members of the Staphylococcus genus.↵↵Optimum growth temperature for S. aureus strain D592 is noted at 3.0°C, suggesting that this strain may be capable of surviving in cooler environments, which could have implications for its persistence in certain ecological contexts or during food storage. This trait may also reflect a potential adaptation to environments where temperatures fluctuate, particularly in host-associated conditions.↵↵The ability to form clusters is indicative of its social behavior in microbial communities, which could influence its interactions with other microbial species and its host. As a facultative organism, S. aureus strain D592's versatility in oxygen utilization may also play a crucial role in its survival strategies within diverse habitats, affecting its metabolic pathways and potential interactions with host immune responses.↵↵Overall, the specific traits of Staphylococcus aureus strain D592 highlight its adaptability and potential ecological roles, particularly in cooler host-associated environments where it can exploit various metabolic strategies for survival and growth." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_CP040666.1 Bac0017311 Nocardioides sp. S-1144 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides dongxiaopingii 2576036 NZ_CP040695.2 Bac0017312 Citrobacter freundii strain R47 "Citrobacter freundii strain R47 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe. This strain is nonsporulating, indicating its inability to form spores, which may influence its survival strategies in various environments. C. freundii is commonly found in diverse habitats, including hospital sewage, the intestinal tract of mammals, and various aquatic environments such as surface waters and soil.↵↵The presence of Citrobacter freundii in hospital sewage highlights its potential role in environments impacted by human activity, where it may participate in nutrient cycling and the degradation of organic matter. Its ability to thrive in both aerobic and anaerobic conditions suggests a versatile metabolic capability, allowing it to adapt to fluctuating oxygen levels in its habitats. This adaptability may also facilitate its growth in the intestinal tract, where oxygen availability can vary significantly.↵↵Furthermore, the isolation of C. freundii strain R47 from sewage environments underscores its ecological relevance in the context of wastewater treatment and sanitation. The strain may contribute to biogeochemical processes, including the breakdown of pollutants, which can be critical for maintaining ecosystem health in contaminated environments. Understanding the traits of C. freundii strain R47 enhances our comprehension of microbial dynamics in wastewater contexts and informs potential applications in bioremediation strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NZ_CP040696.1 Bac0017313 Enterococcus faecium strain HOU503 "Enterococcus faecium strain HOU503 is a Gram-positive cocci known to inhabit fermented mare milk. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying conditions present in its natural habitat. The ability to ferment carbohydrates contributes to its ecological role in the fermentation processes of mare milk, potentially influencing the flavor profile and preservation of this traditional food product. ↵↵Enterococcus faecium strains are often studied for their role in food fermentation and as probiotics, and strain HOU503 may similarly contribute to the microbial diversity and metabolic dynamics within fermented dairy ecosystems. The unique environmental niche of fermented mare milk suggests that E. faecium strain HOU503 may possess specialized adaptations that enhance its survival and functionality in this particular substrate. Understanding the biochemical pathways and interactions of this strain within its habitat could provide insights into its contributions to the fermentation process and the overall microbial community structure in fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040703.1 Bac0017314 Aggregatimonas sangjinii strain F202Z8 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aggregatimonas Aggregatimonas sangjinii 2583587 NZ_CP040710.1 Bac0017315 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM "Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM is a nonsporulating, Gram-negative bacterium characterized by a rod shape and a versatile cell arrangement, manifesting in chains, pairs, or as single cells. This strain thrives optimally at a temperature of 37.0°C, aligning with the typical human body temperature, which suggests a close association with host environments. As a chemoheterotroph, KpvST147B_SE1_1_NDM derives its energy from organic compounds, further underscoring its adaptation to life within host organisms.↵↵The facultative anaerobic nature of this strain allows it to survive in both aerobic and anaerobic conditions, indicating a flexible metabolic capability that may enhance its persistence in diverse microenvironments within a host. Given its host-associated habitat, KpvST147B_SE1_1_NDM may play a role in the complex microbial communities found in human body sites, potentially influencing both health and disease dynamics.↵↵Understanding the unique traits of KpvST147B_SE1_1_NDM, particularly its adaptability to host-associated environments and varied oxygen conditions, can provide insights into its ecological role and metabolic interactions within the microbiota of humans. This adaptability may contribute to its resilience in fluctuating environmental conditions present within the host, highlighting the evolutionary strategies employed by Klebsiella pneumoniae in response to host-associated challenges." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP040728.1 Bac0017316 Enterococcus faecium strain VRE1 "Enterococcus faecium strain VRE1 is a Gram-positive coccus that exhibits facultative anaerobic respiration, indicating its ability to thrive in both aerobic and anaerobic environments. This strain has been isolated from fermented mare milk, suggesting a niche adaptation to dairy environments where fermentation processes occur. ↵↵The coccoid shape of Enterococcus faecium contributes to its characteristic clustering, which can influence its interactions within microbial communities in fermented products. The ability to ferment sugars and tolerate varying oxygen levels may enhance its survival and metabolic versatility in diverse ecological settings, such as the gastrointestinal tract of mammals and in various fermented foods.↵↵This strain's presence in fermented mare milk highlights its potential role in dairy fermentation processes, possibly contributing to the development of flavor and texture in the final product. Additionally, the association of Enterococcus faecium with fermented milk may also reflect its adaptation to the selective pressures of this unique habitat, where it can compete with other microorganisms for resources. Understanding the specific traits of strain VRE1 in this context may provide insights into its ecological role and potential applications in food biotechnology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040740.1 Bac0017317 Nocardioides jishulii strain dk3136 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides jishulii 2575440 NZ_CP040748.1 Bac0017318 Aureibaculum algae strain 10Alg 115 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aureibaculum Aureibaculum algae 2584122 NZ_CP040749.1 Bac0017319 Bacillus thuringiensis strain HM-311 "Bacillus thuringiensis strain HM-311 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in host-associated habitats. As a facultative anaerobe, this strain can survive in both aerobic and anaerobic environments, allowing it to adapt to various ecological niches. The ability to sporulate is a critical trait that enables B. thuringiensis HM-311 to endure unfavorable conditions, contributing to its persistence in host-associated environments.↵↵Bacillus thuringiensis strains are well-known for their production of insecticidal proteins, which occur during sporulation and have been extensively studied for their applications in biological pest control. While specific details about the strain's insecticidal properties are not provided, its classification within the B. thuringiensis species suggests potential interactions with insect hosts, possibly influencing local ecosystems by regulating pest populations.↵↵The ecological role of B. thuringiensis HM-311 may extend beyond its immediate interactions with hosts, as its sporulation capability could facilitate nutrient cycling in host-associated environments. The presence of this bacterium in such habitats indicates its potential contribution to microbial communities and overall soil health, thereby highlighting its significance in maintaining ecological balance." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_CP040784.1 Bac0017320 Staphylococcus aureus strain S15 "Staphylococcus aureus strain S15 is a Gram-positive cocci bacterium that typically arranges itself in clusters or singles. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which is particularly advantageous in host-associated habitats. The optimal growth temperature for S. aureus strain S15 has been identified at 3.0°C, suggesting its potential adaptation to cooler environments within its ecological niche.↵↵As a member of the Staphylococcus genus, S. aureus strain S15 shares common characteristics with its relatives while potentially exhibiting unique adaptations that facilitate its survival in specific host-associated environments. The ability to grow at low temperatures may indicate a role in certain ecological conditions, such as those encountered in cold-blooded hosts or specific niches within larger hosts. This could provide insights into its ecological flexibility and the potential for varied interactions with host organisms. Understanding these traits may also reveal more about the strain's survival strategies and its potential roles in host-associated microbiomes." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_CP040802.1 Bac0017321 Antarcticibacterium flavum strain JB01H24 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Antarcticibacterium Antarcticibacterium flavum 2058175 NZ_CP040812.1 Bac0017322 Paroceanicella profunda strain D4M1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paroceanicella Paroceanicella profunda 2579971 NZ_CP040818.1 Bac0017323 Enterobacter cloacae strain NH77 "Enterobacter cloacae strain NH77 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This trait suggests that E. cloacae NH77 possesses metabolic flexibility, enabling it to adapt to varying oxygen levels in its habitats. ↵↵The strain is found in multiple habitats, indicating a broad ecological niche that could include human-associated environments, soil, and water. This versatility in habitat suggests that E. cloacae NH77 may play a role in various biogeochemical processes, potentially influencing nutrient cycling in different ecosystems. ↵↵Further studies on this strain could elucidate its interactions within microbial communities and its potential contributions to ecological dynamics. Understanding these interactions is critical, as it could provide insights into the roles of E. cloacae in both environmental contexts and its adaptability to diverse ecological niches." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 NZ_CP040826.1 Bac0017324 Paenibacillus polymyxa strain ZF129 "Paenibacillus polymyxa strain ZF129 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrive under varying environmental conditions. This strain functions as a chemoheterotroph, deriving its energy from organic compounds, and demonstrates facultative anaerobic metabolism, allowing it to adapt to both aerobic and anaerobic environments. The optimal growth temperature for P. polymyxa strain ZF129 is approximately 37.0°C, which aligns with the typical temperature range for many mesophilic bacteria.↵↵P. polymyxa strains are known for their versatile metabolic capabilities, which enable them to occupy multiple habitats. This adaptability may facilitate their persistence in diverse ecological niches, potentially contributing to soil health and nutrient cycling. Given its sporulating nature, strain ZF129 is likely to withstand environmental stresses, allowing it to remain viable in fluctuating conditions. This resilience may play a significant role in its ecological interactions, particularly in environments where other microbial populations may be less stable. Further exploration of P. polymyxa strain ZF129's metabolic pathways and ecological roles could provide insights into its potential applications in agriculture and biotechnology, particularly in promoting plant health and soil fertility." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa Positive Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 1406 NZ_CP040829.1 Bac0017325 Thermococcus indicus strain IOH1 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus indicus 2586643 NZ_CP040846.1 Bac0017326 Pasteurella multocida strain EB104 "Pasteurella multocida strain EB104 is a Gram-negative, rod-shaped bacterium that optimally grows at 37.0°C and exhibits facultative anaerobic respiration. This strain is typically associated with host organisms, indicating its potential role in host-associated environments, which may include the respiratory tracts of various animals. The ability of P. multocida to thrive in both aerobic and anaerobic conditions suggests a versatile metabolic capacity, enabling it to adapt to varying oxygen levels encountered in host tissues.↵↵The ecological niche of Pasteurella multocida is closely tied to its association with animals, often serving as a commensal organism or a potential pathogen under certain conditions. Its presence in host-associated habitats suggests a role in the microbial communities of these environments, which can influence the health and disease status of the host. The adaptability of strain EB104 to host-associated habitats underscores its potential significance in microbial interactions within the host ecosystem.↵↵Overall, the combination of its Gram-negative structure, rod shape, and facultative anaerobic nature positions Pasteurella multocida strain EB104 as a microbe of interest in understanding host-microbe interactions, particularly in terms of how it might influence or be influenced by the dynamic conditions present within its host environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 747 NZ_CP040848.1 Bac0017327 Enterococcus faecium strain F17E0263 "Enterococcus faecium strain F17E0263 is a Gram-positive cocci that demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is notably isolated from fermented mare milk, indicating its potential role in dairy fermentation processes and its adaptation to the unique microbial ecosystem of equine milk. The presence of E. faecium in such specific habitats suggests that it may contribute to the flavor and preservation of fermented products, as is commonly observed with lactic acid bacteria in dairy fermentation. The ability of E. faecium F17E0263 to survive and function under varying oxygen conditions further underscores its versatility as a microbial agent in fermentation. Understanding the characteristics of this strain could provide insights into its functional applications in food science and contribute to the development of starter cultures for dairy fermentation." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040851.1 Bac0017328 Staphylococcus epidermidis strain HD33 "Staphylococcus epidermidis strain HD33 is a Gram-positive cocci that typically forms clusters or singles. This facultative anaerobe thrives optimally at 30.0°C, indicating its adaptability to a range of temperatures that may be found in host-associated environments. As a member of the Staphylococcus genus, S. epidermidis is commonly found on human skin and mucosal surfaces, suggesting its ecological role as a commensal organism. ↵↵The ability of strain HD33 to grow in both aerobic and anaerobic conditions highlights its metabolic versatility, allowing it to survive in various microenvironments within host-associated habitats. This adaptability not only aids in its survival but may also contribute to its role in the complex interactions of the skin microbiome. The clustering arrangement of the cells may enhance its ability to form biofilms, which are critical for colonization and persistence on biotic surfaces. ↵↵Overall, Staphylococcus epidermidis strain HD33 exemplifies the characteristics of a resilient skin commensal, capable of thriving in diverse conditions while potentially influencing host-microbe interactions in its habitat." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 1282 NZ_CP040864.1 Bac0017329 Staphylococcus epidermidis strain HD43 "Staphylococcus epidermidis strain HD43 is a Gram-positive coccus that typically arranges itself in clusters or singles. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It exhibits optimal growth at a temperature of 30.0°C, which suggests a preference for conditions that may be found in various host-associated environments.↵↵As a member of the Staphylococcus genus, S. epidermidis is commonly associated with human skin and mucous membranes, where it plays a role in the normal microbiota. While it is primarily regarded as a commensal organism, its adaptability to different oxygen levels and temperature indicates its potential resilience in diverse ecological niches within the host. ↵↵The cluster formation of S. epidermidis strain HD43 may contribute to its ability to form biofilms, particularly on implanted medical devices, which is a characteristic feature of many strains within this species. This trait underscores the importance of understanding the ecological role of S. epidermidis in both health and disease contexts, as it may serve as a protective agent for the host while also posing challenges in clinical settings. Overall, the unique growth characteristics and habitat preferences of S. epidermidis strain HD43 highlight its significance in the complex interplay between human hosts and their resident microbial communities." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 1282 NZ_CP040867.1 Bac0017330 Enterococcus faecium strain DB-1 "Enterococcus faecium strain DB-1 is a Gram-positive cocci that exhibits facultative anaerobic metabolism, thriving in the unique habitat of fermented mare milk. This strain, belonging to the Enterococcus genus, demonstrates the characteristic growth patterns and physiological traits associated with lactic acid bacteria, which are important in various fermentation processes.↵↵As a facultative anaerobe, E. faecium strain DB-1 possesses the ability to grow in both aerobic and anaerobic conditions, making it versatile in environments with fluctuating oxygen levels. Its presence in fermented mare milk suggests a potential role in the fermentation process, possibly contributing to the development of flavor and preservation of this dairy product. The ability of this microbe to thrive in this specific habitat may also indicate its adaptation to the unique nutritional and microbial environment provided by mare milk.↵↵The ecological significance of Enterococcus faecium strain DB-1 may extend beyond its fermentation capabilities; its presence in fermented mare milk could reflect broader interactions within microbial communities, including potential symbiotic relationships with other microorganisms involved in the fermentation process. Understanding these dynamics could provide insights into the role of E. faecium in the ecology of dairy fermentation and the maintenance of microbial diversity in similar habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040875.1 Bac0017331 Escherichia coli strain K71-77 "Escherichia coli strain K71-77 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli K71-77 can utilize oxygen for respiration when available but is also capable of surviving in anaerobic conditions, allowing it to inhabit various environments within a host.↵↵The ability of E. coli K71-77 to thrive in diverse oxygen levels may facilitate its survival in different niches within the host, potentially contributing to its ecological versatility. This adaptability to varying oxygen concentrations may also influence its interactions with other microbial species in the host microbiome. Understanding these traits enhances our knowledge of E. coli's ecological roles and its potential contributions to the overall microbial community dynamics within host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP040884.1 Bac0017332 Leclercia adecarboxylata strain Z96-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Leclercia Leclercia adecarboxylata 83655 NZ_CP040892.1 Bac0017333 Enterococcus faecalis strain HA-1 "Enterococcus faecalis strain HA-1 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, utilizing organic compounds as a chemoorganotroph. This strain thrives optimally at a temperature of 37°C, which aligns with the typical conditions found in mammalian hosts. Enterococcus faecalis is known for its ability to inhabit diverse environments, which may include both human and animal gastrointestinal tracts, as well as various terrestrial and aquatic ecosystems.↵↵The facultative anaerobic nature of strain HA-1 allows it to adapt to fluctuating oxygen levels, making it versatile in its ecological niches. This adaptability could facilitate its survival in both aerobic and anaerobic conditions, contributing to its resilience in complex microbial communities. Given its capacity for growth in multiple habitats and its metabolic flexibility, Enterococcus faecalis strain HA-1 may play a significant role in nutrient cycling and microbial interactions within its environments.↵↵Overall, the ecological significance of Enterococcus faecalis strain HA-1 may extend beyond its immediate habitat, with potential implications for understanding microbial dynamics in various ecosystems. This strain's ability to thrive in different environments underscores the importance of Enterococcus species in both health and environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_CP040897.1 Bac0017334 Enterococcus faecium strain N56454 "Enterococcus faecium strain N56454 is a Gram-positive coccal bacterium that is a facultative anaerobe, primarily found in the habitat of fermented mare milk. As a member of the Enterococcus genus, this strain exhibits the characteristic spherical shape associated with cocci, which enables it to endure various environmental conditions, including both aerobic and anaerobic environments due to its facultative anaerobic metabolism.↵↵The presence of Enterococcus faecium in fermented mare milk suggests an adaptation to dairy environments, where it may play a role in the fermentation process, potentially contributing to the development of flavor and texture in the final product. This strain's ability to thrive in a milk-based habitat indicates a potential for involvement in the fermentation microbiota, which could influence the overall microbial dynamics and the sensory properties of fermented dairy products.↵↵Furthermore, the ability of E. faecium strain N56454 to survive and grow in both the presence and absence of oxygen suggests that it may be well-suited for varying fermentation conditions, which could be beneficial in controlled fermentation processes. Investigating the specific roles and interactions of this strain in fermented mare milk could provide insights into the complexities of dairy fermentation and the functional contributions of microbial communities in food production." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 NZ_CP040905.1 Bac0017335 Mesorhizobium sp. 8 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. 8 2584466 NZ_CP040914.1 Bac0017336 Georgenia yuyongxinii strain Z443 Bacillati Actinomycetota Actinomycetes Allobogoriellales Allobogoriellaceae Georgenia Georgenia yuyongxinii 2589797 NZ_CP040915.1 Bac0017337 Pasteurella multocida strain PM 8-6 "Pasteurella multocida strain PM 8-6 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and is optimally adapted to a temperature of 37.0°C. This strain is classified as host-associated, indicating a close relationship with specific host organisms, which may influence its growth and survival characteristics. ↵↵The Gram-negative cell wall structure of P. multocida is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which play roles in its interactions with host immune systems. Its rod shape and facultative anaerobic capabilities suggest that it can thrive in varying oxygen levels, allowing it to colonize diverse ecological niches within its host environment. ↵↵Understanding the growth requirements and habitat preferences of strain PM 8-6 may provide insights into its ecological role within host-associated microbiomes. The ability to thrive at the physiological temperature of mammals and its association with hosts highlight its potential importance in host-specific interactions, including nutrient acquisition and competition with other microbial inhabitants. Further studies on P. multocida strain PM 8-6 may elucidate its functional role within host ecosystems and its adaptations to the host's physiological conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 747 NZ_CP040918.1 Bac0017338 Escherichia coli strain FC853_EC "Escherichia coli strain FC853_EC is a Gram-negative, rod-shaped bacterium typically found in pairs or singles, demonstrating its characteristic morphology. This strain thrives optimally at 37.0°C, which aligns with the average human body temperature, indicating its adaptation to host-associated environments. As a facultative anaerobe, E. coli strain FC853_EC possesses the metabolic versatility to utilize both aerobic and anaerobic respiration, enabling it to survive in varying oxygen conditions within the host.↵↵The association of this strain with host environments suggests its potential role in the complex microbial communities found within the gastrointestinal tract. While many E. coli strains are integral to gut health, contributing to nutrient absorption and synthesis of vitamins, the specific ecological function of strain FC853_EC remains to be fully elucidated. Its survival and metabolic capabilities may influence host-microbe interactions, potentially impacting digestion and immune responses.↵↵The adaptability of E. coli strain FC853_EC to both aerobic and anaerobic conditions, along with its presence in host-associated habitats, underscores the significance of this microbe in understanding microbial dynamics within the gastrointestinal ecosystem and its potential implications for host health. Further studies could reveal insights into its specific contributions to gut microbiota stability and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP040920.1 Bac0017339 Legionella pneumophila strain FDAARGOS_779 "Legionella pneumophila strain FDAARGOS_779 is a Gram-negative, rod-shaped bacterium that exists predominantly in single-cell arrangements. This strain is characterized as a nonsporulating organism and is classified as a chemoorganotroph, indicating that it derives its energy from the organic compounds present in its environment. L. pneumophila is known to be aerobic, requiring oxygen for its metabolic processes.↵↵This strain is host-associated, suggesting a close relationship with specific hosts, which may influence its survival and proliferation. Given its ecological context, L. pneumophila is likely adapted to thrive in environments that provide organic substrates and oxygen, which are essential for its energy metabolism. The ability to exist in a host-associated habitat implies potential interactions with host immune systems and microbiomes, although the specifics of such interactions are not detailed in the available traits.↵↵The unique ecological insight provided by the traits of L. pneumophila strain FDAARGOS_779 highlights the bacterium's potential role in the dynamics of microbial communities associated with aquatic environments, where it may interact with both natural and anthropogenic sources of organic matter, influencing nutrient cycling and microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 NZ_CP040987.1 Bac0017340 Listeria monocytogenes strain FDAARGOS_778 "Listeria monocytogenes strain FDAARGOS_778 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or as singles. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a chemoorganotroph, L. monocytogenes strain FDAARGOS_778 derives its energy from organic compounds, which positions it well to inhabit diverse ecological niches.↵↵The optimal growth temperature for this strain is 30.0°C, suggesting a preference for moderate temperatures that are commonly found in various habitats. This characteristic may contribute to its ability to persist in environments such as soil, water, and decaying plant matter, where it can find suitable organic substrates for energy.↵↵The adaptability of Listeria monocytogenes strain FDAARGOS_778 to different oxygen levels and its broad habitat range highlight its potential resilience in fluctuating environmental conditions. Such traits may facilitate its survival in diverse ecosystems, where it can interact with other microbial communities and contribute to nutrient cycling processes. Understanding the ecological role of this strain can provide insights into its interactions within food webs and its potential impact on microbial dynamics in its environments." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles Nonsporulating Human 1639 NZ_CP040988.1 Bac0017341 Vibrio furnissii strain FDAARGOS_777 "Vibrio furnissii strain FDAARGOS_777 is a Gram-positive bacterium that thrives in marine environments and exhibits facultative anaerobic growth. This strain, belonging to the Vibrio genus, is characterized by its ability to adapt to varying oxygen levels, allowing it to utilize both aerobic respiration and fermentation pathways, depending on the availability of oxygen. ↵↵The marine habitat of V. furnissii strain FDAARGOS_777 suggests that it may play a role in the complex microbial communities found in oceanic ecosystems, potentially contributing to nutrient cycling and organic matter decomposition. Its presence in marine environments might also indicate its involvement in interactions with other microorganisms, as well as its potential adaptation strategies to survive in fluctuating conditions typical of coastal and open ocean ecosystems.↵↵Understanding the metabolic capabilities and ecological roles of V. furnissii strain FDAARGOS_777 can provide insights into the diversity of life in marine habitats and the functional importance of facultative anaerobes in these environments. The strain's adaptability to both aerobic and anaerobic conditions may highlight its significance in biogeochemical processes, such as the transformation of organic materials, thus influencing the overall health and dynamics of marine microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio furnissii Positive Facultative anaerobe Marine Human 29494 NZ_CP040989.1 Bac0017342 Klebsiella pneumoniae strain FDAARGOS_775 "Klebsiella pneumoniae strain FDAARGOS_775 is a Gram-negative, rod-shaped bacterium that typically exists in various arrangements, including chains, pairs, and singles. This strain is characterized as nonsporulating and is classified as a chemoheterotroph, indicating its reliance on organic compounds for energy and growth. It demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments.↵↵The optimal growth temperature for K. pneumoniae strain FDAARGOS_775 is 37.0°C, which is consistent with its association with host organisms, suggesting a potential adaptation to the human body temperature. This adaptation may enhance its survival and proliferation within host-associated habitats, likely contributing to its ecological niche in mammalian systems.↵↵Overall, the traits of K. pneumoniae strain FDAARGOS_775 highlight its versatile metabolic capabilities and its ability to inhabit diverse environments, particularly those associated with hosts, where it may play a role in the complex interactions of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_CP040992.1 Bac0017343 Streptococcus pyogenes strain FDAARGOS_774 "Streptococcus pyogenes strain FDAARGOS_774 is a Gram-positive coccus that typically forms chains or pairs. This bacterium thrives optimally at a temperature of 30.0°C and is categorized as a facultative anaerobe, allowing it to survive in varying oxygen conditions. S. pyogenes is known to inhabit host-associated environments, suggesting a close relationship with its host organisms, which may include humans and other mammals.↵↵The chain and pair arrangement of these cocci can play a role in their ability to colonize and persist within host tissues. The facultative anaerobic nature of S. pyogenes strain FDAARGOS_774 indicates that it can adapt to both aerobic and anaerobic environments, which is particularly advantageous during infection when oxygen levels may fluctuate. ↵↵This adaptability may also contribute to the bacterium's survival in diverse ecological niches within a host, emphasizing the complexity of host-microbe interactions. Understanding the traits of S. pyogenes strain FDAARGOS_774 provides valuable insights into the ecological dynamics of this species, as its growth conditions and structural characteristics may influence its role in the microbiome and potential interactions with the immune system." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 NZ_CP040997.1 Bac0017344 Staphylococcus aureus strain FDAARGOS_773 "Staphylococcus aureus strain FDAARGOS_773 is a Gram-positive coccus that typically forms clusters or singles. This strain is facultatively anaerobic, indicating its ability to grow in both the presence and absence of oxygen. Notably, it thrives at an optimal temperature of 3.0°C, suggesting that it has adapted to cooler environments, which may be relevant in specific ecological niches, particularly in host-associated habitats. ↵↵The clustering arrangement of S. aureus is a characteristic feature that contributes to its identification and classification within the Staphylococcus genus. This morphological trait is significant as it may influence the strain's interactions with host organisms and its overall physiology. The facultative nature of this strain allows it to exploit different metabolic pathways depending on the availability of oxygen, potentially enhancing its survival in various environments.↵↵Given its habitat association with hosts, it is plausible that FDAARGOS_773 occupies specialized niches within host organisms, where it may interact with other microbial communities or host defenses. The capacity to thrive at low temperatures could suggest a role in certain host-associated contexts, such as in cooler climates or specific anatomical sites that maintain lower temperatures. This unique combination of traits positions S. aureus strain FDAARGOS_773 as a potential subject for studies on microbial adaptation and survival strategies in diverse ecological settings." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 NZ_CP041000.1 Bac0017345 Escherichia coli strain FDAARGOS_772 "Escherichia coli strain FDAARGOS_772 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting a close association with host environments. As a facultative anaerobe, E. coli strain FDAARGOS_772 can grow in both the presence and absence of oxygen, allowing it to adapt to diverse niches within its host. ↵↵The habitat of this strain is categorized as host-associated, indicating its reliance on or adaptation to living organisms for survival. Such traits are common among many E. coli strains, which often inhabit the intestines of mammals, where they play a role in digestion and can interact with the host's immune system. Understanding the specific conditions under which E. coli strain FDAARGOS_772 flourishes may provide insights into its ecological role and potential interactions with its host. This adaptability highlights the complex relationships between microbes and their environments, illustrating how host-associated bacteria can exploit varying conditions to thrive and possibly influence host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP041003.1 Bac0017346 Salmonella enterica strain FDAARGOS_768 "Salmonella enterica strain FDAARGOS_768 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and a tendency to form chains or exist as single cells. This strain thrives optimally at a temperature of 37.0°C, reflecting its adaptation to host-associated environments, where it likely engages with a variety of biological substrates. As a chemoorganotroph, FDAARGOS_768 derives its energy from organic compounds, which may be indicative of its metabolic versatility in nutrient-rich habitats typically found within host organisms.↵↵The microaerophilic nature of this strain suggests that it requires lower levels of oxygen for optimal growth, which aligns with the anaerobic conditions often present in the gastrointestinal tracts of animals. This adaptation not only facilitates its survival in such environments but may also hint at its involvement in complex interactions with the host microbiome. Overall, the ecological significance of Salmonella enterica strain FDAARGOS_768 may extend beyond its role as a potential pathogen, as its metabolic and morphological traits could contribute to its integration within the microbial communities of its host, influencing nutrient cycling and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 NZ_CP041005.1 Bac0017347 Pseudomonas aeruginosa strain FDAARGOS_610 "Pseudomonas aeruginosa strain FDAARGOS_610 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in a variety of habitats. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds in its environment. It is an aerobic organism, requiring oxygen for its metabolic processes, which aligns with its ecological versatility in diverse environments. The optimal growth temperature for this strain is approximately 25.0°C, suggesting a preference for moderate conditions that may be found in temperate ecosystems.↵↵The ability of Pseudomonas aeruginosa to adapt to multiple habitats highlights its ecological significance, particularly in environments with fluctuating nutrient availability. This adaptability may be attributed to its metabolic flexibility, allowing it to exploit a range of organic substrates. Furthermore, its single-cell arrangement may facilitate rapid colonization and resource utilization in competitive microbial communities. Understanding the traits of strain FDAARGOS_610 can provide insights into the ecological niches that Pseudomonas aeruginosa occupies, as well as its potential roles in nutrient cycling and interactions within microbial consortia." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 NZ_CP041013.1 Bac0017348 Bacillus subtilis strain FDAARGOS_606 "Bacillus subtilis strain FDAARGOS_606 is a Gram-positive, rod-shaped bacterium known for its ability to sporulate, which enables it to survive in various environmental conditions. This strain thrives optimally at a temperature of 25.0°C and exhibits facultative anaerobic characteristics, allowing it to grow in both the presence and absence of oxygen. Its habitat is classified as host-associated, suggesting a potential symbiotic relationship with its host organisms.↵↵Bacillus subtilis is commonly recognized for its role in soil and plant health, and strains like FDAARGOS_606 may contribute to nutrient cycling and the promotion of plant growth through mechanisms such as the production of bioactive compounds or the enhancement of soil structure. The ability to form spores is particularly advantageous for survival in fluctuating environments, enabling the bacterium to withstand adverse conditions until favorable growth conditions return. ↵↵The ecological significance of Bacillus subtilis strain FDAARGOS_606 may extend to its interactions within host-associated environments, where it could influence microbial community dynamics and contribute to the overall health and resilience of the ecosystem. Further studies are warranted to elucidate its specific roles and interactions in these contexts." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 NZ_CP041015.1 Bac0017349 Legionella geestiana strain HL-0438-4026 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella geestiana 45065 NZ_CP041714.1 Bac0017350 Micrococcus sp. KBS0714 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus sp. KBS0714 1179670 NZ_CP042169.1 Bac0017351 Flavobacterium sp. KBS0721 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. KBS0721 1179672 NZ_CP042170.1 Bac0017352 Agrobacterium tumefaciens strain 186 "Agrobacterium tumefaciens strain 186 is a Gram-negative, rod-shaped bacterium that thrives optimally at 25.0°C and exhibits aerobic metabolic characteristics. This strain is part of a diverse genus known for its ability to inhabit multiple environments, demonstrating considerable ecological versatility. ↵↵As a member of the Agrobacterium genus, strain 186 is particularly notable for its role in plant-microbe interactions, although specific pathogenicity traits are not detailed in the provided data. It is commonly found in soil and plant rhizospheres, where it may contribute to various ecological processes.↵↵The aerobic nature of strain 186 suggests that it utilizes oxygen for respiration, which may influence its distribution in environments with varying oxygen availability. Furthermore, the optimal growth temperature of 25.0°C indicates a preference for moderate conditions, which aligns with the typical habitats of many soil-dwelling bacteria. ↵↵Understanding the traits of Agrobacterium tumefaciens strain 186 can provide insights into its potential roles in agricultural and ecological contexts, particularly regarding its interactions with plant hosts and its contribution to nutrient cycling. This highlights the importance of studying such strains to explore their utility in biotechnology and sustainable agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP042274.1 Bac0017353 Pseudomonas amygdali pv. tabaci str. ATCC 11528 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 573066 NZ_CP042804.1 Bac0017354 Acetobacter oryzoeni strain B6 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter oryzoeni 2500548 NZ_CP042808.1 Bac0017355 Mucilaginibacter rubeus strain P1 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter rubeus 2027860 NZ_CP043450.1 Bac0017356 Methylobacterium mesophilicum SR1.6/6 "Methylobacterium mesophilicum SR1.6/6 is a Gram-negative, aerobic bacterium belonging to the genus Methylobacterium. This species is characterized by its ability to utilize methanol as a carbon source, which is a hallmark trait of many members of the Methylobacterium genus. As an aerobic organism, M. mesophilicum SR1.6/6 requires oxygen for its metabolic processes, positioning it within environments that offer sufficient oxygen levels for growth and activity.↵↵Methylobacterium species are often found in diverse habitats, including soil and plant environments, where they may contribute to the cycling of carbon compounds. The presence of M. mesophilicum SR1.6/6 in such environments suggests its potential role in promoting plant health or influencing soil microbiomes through its methanol-utilizing capabilities. Additionally, the Gram-negative nature of this bacterium indicates a complex cell wall structure, which may confer specific advantages in its ecological niche, such as resistance to certain environmental stresses.↵↵Understanding the traits of Methylobacterium mesophilicum SR1.6/6 can provide insights into its functional role within microbial communities, particularly in relation to carbon cycling and its interactions with other organisms in its habitat. Further research may elucidate its contributions to soil fertility and plant-microbe interactions, thereby highlighting the ecological significance of this organism in its natural environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium mesophilicum negative aerobic 908290 NZ_CP043538.1 Bac0017357 Bacillus altitudinis strain CHB19 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus altitudinis soil 293387 NZ_CP043559.1 Bac0017358 Pukyongiella litopenaei strain SH-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pukyongiella Pukyongiella litopenaei 2605946 NZ_CP043619.1 Bac0017359 Escherichia coli strain CVM N17EC0616 "Escherichia coli strain CVM N17EC0616 is a Gram-negative, rod-shaped bacterium that typically exhibits a distribution in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host organisms. E. coli is known for its versatile metabolic capabilities, functioning as a facultative anaerobe; it can grow in the presence or absence of oxygen, allowing it to adapt to varying environmental conditions within its host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli strains like CVM N17EC0616 are often found in the intestines of warm-blooded organisms and play a significant role in the gut microbiota. Their adaptability to host environments and ability to utilize different metabolic pathways can influence the microbial community structure and function within the gastrointestinal tract. This strain may provide insights into the complex interactions between host-associated microbes and their environments, particularly in relation to nutrient cycling and microbial competition in host-associated habitats. Understanding the specific traits of E. coli strain CVM N17EC0616 could contribute to a broader knowledge of microbial dynamics in various ecosystems, especially those influenced by host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_CP043736.1 Bac0017360 Pseudoalteromonas rubra strain S4059 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas rubra 43658 NZ_CP045429.1 Bac0017361 Janibacter melonis strain M714 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter melonis 262209 NZ_CP046475.1 Bac0017362 Planococcus halotolerans strain Y50 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus halotolerans 2233542 NZ_CP047673.1 Bac0017363 Parageobacillus toebii NBRC 107807 strain DSM 14590 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Parageobacillus Parageobacillus toebii 1223503 NZ_CP049703.1 Bac0017364 Desulfosediminicola flagellatus strain IMCC35005 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfosediminicola Desulfosediminicola flagellatus 2569541 NZ_CP050698.1 Bac0017365 Serratia symbiotica strain CWBI-2.3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia symbiotica 138074 NZ_CP050855.1 Bac0017366 Thioclava electrotropha strain Elox9 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava electrotropha 1549850 NZ_CP053562.1 Bac0017367 Rhizobium indicum strain JKLM 12A2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium indicum 2583231 NZ_CP054021.1 Bac0017368 Rhizobium hidalgonense strain JKLM 19E Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium hidalgonense 1538159 NZ_CP054027.1 Bac0017369 Rhizobium indicum strain JKLM 13E Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium indicum 2583231 NZ_CP054031.1 Bac0017370 Scandinavium goeteborgense strain CCUG 66741 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Scandinavium Scandinavium goeteborgense 1851514 NZ_CP054058.1 Bac0017371 Enterobacter hormaechei strain KCJ3K19 "Enterobacter hormaechei strain KCJ3K19 is a Gram-negative bacterium that is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. This strain is host-associated, suggesting that it may inhabit specific biological hosts, where it could play a role in various ecological interactions.↵↵As a member of the Enterobacter genus, strain KCJ3K19 shares common traits with other Enterobacter species, including potential metabolic versatility and adaptability to different environmental conditions. The facultative anaerobic nature of this strain allows it to thrive in diverse habitats, utilizing oxygen when available while also being capable of anaerobic respiration when oxygen is limited.↵↵The host-associated lifestyle of Enterobacter hormaechei strain KCJ3K19 may hint at its involvement in the microbiomes of its hosts, where it could contribute to the complex microbial community dynamics. Such associations are critical in understanding the roles of microbial inhabitants in health and disease, as well as in nutrient cycling within the host environment. Further research into the specific interactions of strain KCJ3K19 with its host could provide insights into its ecological significance and potential applications in biotechnology or medicine." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 NZ_CP054411.1 Bac0017372 Bifidobacterium longum subsp. infantis strain Bi-26 "Bifidobacterium longum subsp. infantis strain Bi-26 is a Gram-positive, rod-shaped bacterium characterized by its ability to form clusters, pairs, and singles. This strain optimally thrives at a temperature of 37.0°C and is classified as an anaerobe, indicating that it does not require oxygen for growth. B. longum subsp. infantis strain Bi-26 is host-associated, typically residing in the gastrointestinal tract of infants, where it contributes to the complex microbial ecosystem.↵↵The presence of B. longum subsp. infantis strain Bi-26 in the gut flora of infants is significant, as it plays a crucial role in the digestion of human milk oligosaccharides, supporting the development of a healthy gut microbiome. This strain is known for its potential benefits in promoting gut health and enhancing immunity, particularly in early life. The unique ability to thrive in anaerobic conditions allows it to occupy ecological niches within the intestines that may be inhospitable to other microbial species, facilitating a balanced microbial community.↵↵Understanding the traits of Bifidobacterium longum subsp. infantis strain Bi-26 not only underscores its importance in infant gastrointestinal health but also highlights its potential as a probiotic candidate in dietary formulations aimed at restoring gut flora in early childhood." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Non-pathogenic 1682 NZ_CP054425.1 Bac0017373 Halorubrum sp. CBA1229 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. CBA1229 1853699 NZ_CP054585.1 Bac0017374 Acinetobacter sp. MYb10 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. MYb10 1827285 NZ_CP058272.1 Bac0017375 Aeromonas veronii Hm21 "Aeromonas veronii Hm21 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This organism is primarily found in sediment, indicating its potential role in the microbial communities of aquatic environments. As an aerobe, A. veronii Hm21 requires oxygen for its metabolic processes, which suggests that it may thrive in well-oxygenated sediment layers.↵↵The morphological characteristics of A. veronii Hm21, including its rod shape and cell arrangement, are consistent with those of other members of the Aeromonas genus, which is known for its versatile metabolic capabilities. The sediment habitat may provide a complex microenvironment where this microbe can engage in various biochemical interactions, potentially influencing nutrient cycling and organic matter decomposition.↵↵Interestingly, the presence of A. veronii Hm21 in sediment may also indicate its adaptability to fluctuating environmental conditions, as sediments often experience variations in oxygen levels and organic content. This adaptability could allow the bacterium to occupy a niche that contributes to the overall health and functionality of the ecosystem, highlighting the importance of sediment-dwelling microbes in maintaining ecological balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles 1347420 NZ_CP059396.1 Bac0017376 Thalassomonas actiniarum strain A5K-106 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassomonas Thalassomonas actiniarum 485447 NZ_CP059736.1 Bac0017377 Pseudooceanicola algae strain Lw-13e Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola algae 1537215 NZ_CP060436.1 Bac0017378 Xanthomonas citri pv. durantae strain LMG696 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 487862 NZ_CP066344.1 Bac0017379 Morganella morganii strain FAM24091 "Morganella morganii strain FAM24091 is a Gram-negative, rod-shaped bacterium that demonstrates facultative anaerobic metabolism. This strain, like other members of the Morganella genus, thrives in natural environments, particularly in sewage, where it can contribute to the complex microbial community of such habitats. ↵↵As a facultative anaerobe, M. morganii strain FAM24091 possesses the ability to grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions. This metabolic versatility may confer advantages in fluctuating ecological niches, such as those found in wastewater treatment systems or polluted environments, where oxygen levels can vary significantly. ↵↵The natural habitat of this strain indicates its potential role in nutrient cycling and organic matter degradation within sewage ecosystems. Understanding the ecological functions of M. morganii strain FAM24091 could provide insights into its contributions to bioremediation processes, particularly in environments impacted by organic waste. Further research into its biochemical capabilities and interactions within microbial communities may reveal its significance in maintaining ecosystem balance and resilience in contaminated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Rod Facultative anaerobe mesophilic natural environment; sewage 582 NZ_CP066777.1 Bac0017380 Cryobacterium sp. SO1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium sp. SO1 1897061 NZ_CP067394.1 Bac0017381 Burkholderia seminalis strain 869T2 "Burkholderia seminalis strain 869T2 is a Gram-negative, nonsporulating rod-shaped bacterium characterized by its facultative aerobic metabolism. This strain is part of the diverse genus Burkholderia, which is known for its environmental versatility and ability to thrive in multiple habitats. As a facultative aerobe, Burkholderia seminalis strain 869T2 can utilize both aerobic and anaerobic respiration, allowing it to adapt to varying oxygen conditions within its environment. ↵↵The ability to inhabit multiple ecological niches suggests that this strain may play a significant role in nutrient cycling or other ecological processes. Its nonsporulating nature indicates a reliance on vegetative growth for survival and reproduction, which may influence its interactions with other microorganisms and its resilience in fluctuating environments. Further research into the specific habitats occupied by Burkholderia seminalis strain 869T2 could provide insights into its ecological functions and potential applications in biotechnology or environmental remediation." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia seminalis Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 488731 NZ_CP072522.1 Bac0017382 Streptomyces auratus AGR0001 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces auratus 1160718 NZ_CP072931.1 Bac0017383 Acinetobacter junii strain AJ_351 "Acinetobacter junii strain AJ_351 is a Gram-negative bacterium characterized by its strict aerobic metabolism. This strain exhibits the typical morphological and physiological traits associated with the Acinetobacter genus, which is known for its resilience in various environments. As an aerobe, A. junii AJ_351 relies on oxygen for its metabolic processes, positioning it within the ecological niches where oxygen is readily available. ↵↵The Gram-negative cell wall structure of A. junii AJ_351 comprises a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may contribute to its adaptability in diverse environments. This structural feature is significant as it often influences the microbe's interactions with other organisms and its capacity to survive in competitive ecosystems.↵↵The ecological role of A. junii AJ_351 may include participation in nutrient cycling and soil health, particularly in environments enriched with organic matter, where aerobic conditions prevail. Its ability to thrive in such habitats may provide insights into the dynamics of microbial communities, especially in relation to oxygen availability and metabolic versatility. Overall, A. junii strain AJ_351 exemplifies the complexity and adaptability of microorganisms in various ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 NZ_CP078019.1 Bac0017384 Citrobacter freundii strain CF_324 "Citrobacter freundii strain CF_324 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain does not undergo sporulation and is commonly found in diverse environments, including hospital sewage, the intestinal tract of various organisms, sewage systems, soil, and surface waters. ↵↵As a facultative anaerobe, C. freundii strain CF_324 possesses the ability to thrive in both aerobic and anaerobic conditions, allowing it to adapt to a variety of ecological niches. Its presence in hospital sewage suggests a potential role in the microbial community dynamics of waste treatment systems, where it may contribute to nutrient cycling and organic matter degradation. ↵↵The strain's adaptability to different environments, coupled with its nonsporulating nature, indicates that it may rely on rapid growth and reproduction in favorable conditions rather than forming spores to withstand adverse environments. This trait could facilitate its persistence in fluctuating habitats, such as sewage and soil, where nutrient availability and oxygen levels can vary significantly. Understanding the ecological role of Citrobacter freundii strain CF_324 may provide insights into microbial interactions in contaminated environments and inform strategies for managing microbial communities in wastewater treatment processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 NZ_CP078021.1 Bac0017385 Acinetobacter variabilis strain AV_175 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter variabilis 70346 NZ_CP078028.1 Bac0017386 Shewanella putrefaciens strain SA70 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens 24 NZ_CP078038.1 Bac0017387 Acinetobacter junii strain AJ_068 "Acinetobacter junii strain AJ_068 is a Gram-negative, aerobic bacterium recognized for its resilience in various environments. As a member of the Acinetobacter genus, this strain is characterized by its rod-shaped morphology and its ability to thrive in the presence of oxygen. The Gram-negative nature of Acinetobacter junii indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its robust survival mechanisms under diverse conditions.↵↵The aerobic requirement of strain AJ_068 suggests that it relies on oxygen for its metabolic processes, which can influence its ecological niche and interactions with other microorganisms. Aerobic bacteria like A. junii often inhabit environments rich in oxygen, such as soil and water, where they can play significant roles in nutrient cycling and organic matter decomposition.↵↵The adaptability of Acinetobacter junii strain AJ_068 to aerobic conditions may also provide insights into its potential utility in bioremediation efforts, particularly in oxygenated environments where organic pollutants are present. Understanding the metabolic pathways and ecological roles of such strains can enhance our knowledge of microbial ecology and contribute to the development of biotechnological applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 NZ_CP078044.1 Bac0017388 Acinetobacter lwoffii strain AL_065 "Acinetobacter lwoffii strain AL_065 is a Gram-negative, rod-shaped bacterium that thrives as an aerobic organism. This strain has been isolated from the oropharynx and skin of humans, indicating its potential role as a commensal microbe within the human microbiome. The presence of A. lwoffii in these habitats suggests that it may contribute to the maintenance of mucosal and skin health, although the specific functions it serves in these environments remain to be fully elucidated.↵↵As an aerobe, A. lwoffii strain AL_065 requires oxygen for its metabolic processes, which may influence its distribution and interactions within the human body. Its adaptation to both the oropharyngeal and cutaneous environments highlights its versatility and potential resilience to varying local conditions. Understanding the ecological role of A. lwoffii strain AL_065 could provide insights into the dynamics of microbial communities in human health, particularly in relation to how such bacteria might interact with other members of the microbiome or respond to environmental changes. Further investigation into the metabolic pathways and interactions of this strain may reveal its significance in broader ecological contexts or its potential utility in biotechnological applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Rod Yes Aerobe oropharynx; skin 28090 NZ_CP078047.1 Bac0017389 Acinetobacter johnsonii strain AJ_082 "Acinetobacter johnsonii strain AJ_082 is a Gram-negative bacterium primarily found within the ATCC skin microbiome and in guano environments. This strain is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes. ↵↵The presence of Acinetobacter johnsonii in diverse habitats, including human skin and guano, suggests a degree of ecological versatility that may be relevant for its survival and adaptation in varying conditions. In the skin microbiome, A. johnsonii could play a role in maintaining microbial balance, potentially influencing skin health and the prevention of pathogenic colonization. ↵↵The ability of this strain to thrive in guano also highlights its role in nutrient cycling within these environments, where it may contribute to the breakdown of organic matter. The distinct habitats occupied by A. johnsonii strain AJ_082 provide insights into its ecological functions, suggesting that it could serve as a model organism for studying microbial interactions in both human-associated and natural ecosystems. Further research into its metabolic pathways and interactions with other microorganisms could yield valuable information about its ecological roles and potential applications in biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe ATCC skin microbiome; guano 40214 NZ_CP079793.1 Bac0017390 Granulicatella adiacens strain FDAARGOS_1477 "Granulicatella adiacens strain FDAARGOS_1477 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a heterotrophic aerobe. This strain, belonging to the genus Granulicatella, has been isolated from multiple habitats, indicating its potential versatility in various ecological niches. ↵↵As a heterotroph, G. adiacens strain FDAARGOS_1477 relies on organic compounds for energy, which suggests its role in organic matter decomposition and nutrient cycling within its environments. The requirement for oxygen points to its aerobic metabolism, which may influence its distribution in environments where oxygen availability can vary.↵↵The adaptability of this strain to multiple habitats indicates a robust ecological presence, potentially facilitating interactions with other microorganisms and contributing to the microbial diversity in those ecosystems. Understanding the specific ecological roles and interactions of Granulicatella adiacens strain FDAARGOS_1477 may offer insights into its contributions to microbial communities, particularly in environments where organic substrates are prevalent. Further studies could elucidate its functional roles and interactions in complex microbial networks." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Granulicatella Granulicatella adiacens Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 46124 NZ_CP082858.1 Bac0017391 Mycobacterium lepromatosis strain FJ924 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium lepromatosis 480418 NZ_CP083405.1 Bac0017392 Xanthomonas phaseoli pv. manihotis strain CHN01 "Xanthomonas phaseoli pv. manihotis strain CHN01 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a heterotrophic aerobe. This strain demonstrates versatility in its habitat, suggesting an ability to thrive in various environmental conditions. As a member of the Xanthomonadaceae family, it is characterized by its distinct cellular morphology and metabolic capabilities, which allow it to utilize organic compounds as energy sources.↵↵The aerobic nature of X. phaseoli pv. manihotis strain CHN01 indicates that it requires oxygen for growth, a trait that may influence its distribution in environments where oxygen levels fluctuate. The ability to adapt to multiple habitats could reflect its potential interactions with other microorganisms and its role within microbial communities.↵↵Understanding the ecological niche of Xanthomonas phaseoli pv. manihotis strain CHN01 provides insights into its potential contributions to the nutrient cycling processes in its environment, as well as its interactions with plant hosts, which may include contributions to plant health or disease dynamics. Further research into its specific ecological roles could enhance our understanding of its significance within agricultural systems, where it may impact crop productivity and sustainability." Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles NZ_CP083575 Bac0017393 Bacillus cereus strain A22 "Bacillus cereus strain A22 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain thrives optimally at a temperature of 25.0°C and exhibits aerobic metabolic characteristics, necessitating oxygen for growth and survival. ↵↵Bacillus cereus is known for its ability to inhabit diverse environments, which suggests an ecological versatility that allows it to colonize various habitats. This adaptability may play a significant role in its survival across different ecological niches. The filamentous arrangement of cells may enhance nutrient acquisition or provide structural advantages in certain environments, potentially influencing its interactions with other microbial communities.↵↵In summary, Bacillus cereus strain A22 exemplifies the ecological adaptability of the Bacillus genus, showcasing its ability to thrive in multiple habitats while maintaining a specific optimal growth temperature and aerobic lifestyle. Understanding the physiological traits of this strain may provide insights into its role within microbial ecosystems and its potential applications in biotechnology or agriculture." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP085498.1 Bac0017394 Bacillus cereus strain A24 "Bacillus cereus strain A24 is a Gram-positive, rod-shaped bacterium that typically exhibits a chain arrangement. This strain thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen in metabolic processes. The habitat of Bacillus cereus strain A24 is diverse, encompassing a variety of environments, which may include soil, water, and decaying organic matter. ↵↵The structural characteristics of Bacillus cereus strain A24, particularly its chains of rod-shaped cells, suggest a potential for forming multicellular arrangements that could enhance survival in fluctuating environmental conditions. The strain's adaptability to multiple habitats may contribute to its ecological success, allowing it to exploit various nutrient sources and interact with other microorganisms within its environment. This versatility highlights the importance of Bacillus cereus strain A24 in microbial communities, where it may play a role in biogeochemical cycling and organic matter decomposition. Further studies could elucidate its specific interactions and contributions to ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 NZ_CP085501.1 Bac0017395 Lysinibacillus sp. CD3-6 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sp. CD3-6 2892541 NZ_CP085881.1 Bac0017396 Mycoplasma feriruminatoris strain G5847 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma feriruminatoris 1179777 NZ_CP091032.1 Bac0017397 Clostridium felsineum strain DSM 7320 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium felsineum 36839 NZ_CP096984.1 Bac0017398 Mucispirillum schaedleri ASF457 "Mucispirillum schaedleri ASF457 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under strictly anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is notable for its adaptation to an oxygen-deprived environment, which may suggest a specialized role in the microbiota of anaerobic habitats. ↵↵The rod shape of Mucispirillum schaedleri may facilitate its motility and colonization within such niches, potentially impacting its interactions with other microbial communities. The absence of sporulation indicates that this organism relies on other mechanisms for survival and persistence in its environment, which could include the formation of biofilms or symbiotic relationships with other microorganisms.↵↵Given its anaerobic nature and optimal growth conditions, Mucispirillum schaedleri may be involved in various biochemical processes, such as the fermentation of substrates found in anoxic environments. Its presence could influence nutrient cycling and contribute to the stability of microbial ecosystems in which it resides. The traits of this organism suggest intriguing possibilities for its role in maintaining the balance of gut microbiota or other anaerobic environments, highlighting the complexity of microbial interactions in such settings." Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri Gram-negative rod anaerobic 37 mesophilic non-spore-forming 1379858 NZ_CP097562.1 Bac0017399 Pseudomonas putida strain ATCC 12633 "Pseudomonas putida strain ATCC 12633 is a Gram-negative, nonsporulating rod-shaped bacterium that predominantly exists as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, which reflects its ecological adaptability in various environments. P. putida strain ATCC 12633 is commonly found in soil and wastewater, highlighting its role in nutrient cycling and potential involvement in bioremediation processes.↵↵As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic conditions, allowing it to exploit a wide range of habitats and substrates. The ability to grow in diverse environments, including contaminated sites, indicates its versatility and ecological significance in biodegradation. Furthermore, the heterotrophic nature of this bacterium suggests that it may play a critical role in the decomposition of organic materials, contributing to soil health and fertility.↵↵Overall, Pseudomonas putida strain ATCC 12633 exemplifies the adaptability of microbial life in dynamic environments, with implications for its use in biotechnological applications, particularly in the treatment of wastewater and the remediation of polluted soils." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 NZ_CP101910.1 Bac0017400 Bdellovibrio sp. SKB1291214 Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. SKB1291214 soil 1732569 NZ_CP106855.1 Bac0017401 Lysobacter enzymogenes strain B25 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter enzymogenes soil 69 NZ_CP110813.1 Bac0017402 Gallibacterium anatis strain ESV200 "Gallibacterium anatis strain ESV200 is a Gram-negative bacterium characterized by its distinct cell wall structure and morphology. As a member of the Gallibacterium genus, this strain is of interest due to its potential implications in avian health and its role in poultry-associated environments. The Gram-negative nature of G. anatis indicates the presence of an outer membrane containing lipopolysaccharides, which is a common feature among bacteria in this group and can influence interactions with host organisms and environmental factors.↵↵The strain ESV200 has been identified in specific ecological niches, which suggests its adaptability and potential role in microbial communities associated with poultry. The presence of this bacterium in such environments underscores the importance of understanding its biological traits and interactions with other microorganisms. ↵↵Further research on Gallibacterium anatis strain ESV200 could provide insights into its metabolic capabilities, resistance mechanisms, and its interactions within poultry microbiomes. Understanding these factors may elucidate broader ecological relationships in avian habitats, highlighting the complexity and interconnectedness of microbial life in agricultural systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis negative 750 NZ_CP114281.1 Bac0017403 Agrobacterium pusense strain CFBP5496 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium pusense 648995 NZ_CP116735.1 Bac0017404 Rhodopseudomonas palustris CGA009 "Rhodopseudomonas bacteria are purple nonsulfur phototrophic organisms that can be found many types of marine environments and soils. It converts sunlight into energy and converts atmospheric carbon dioxide into biomass. R. palustris has the potential to be very useful because it can degrade and recycle several different aromatic compounds that make up lignin, the ""main constituent of wood and the second most abundant polymer on earth"" (DOE). Thus, this bacteria and those like it may be useful in removing these types of waste from the environment. In addition, R. palustris converts N2 into NH4 and H2, which can be used as a biofuel.Rhodopseudomonas palustris, whose genome has been sequenced by the DOE Joint Genome Institute, has a certain genetic system that allows genes to be moved in and out of the bacterium easily. This allows researchers to target certain genes for mutagenesis and ""rapidly apply information gained from genome sequencing to the developing area of functional genomics"" (DOE). The genome, which is 5.46 Mb in length and is comprised of about 4,800 genes, encodes for proteins involved in a verstile and flexible metabolism as well as a cellular differentiation and a budding reproduction. It is similar to the genome of Bradyrhizobium japonicum including many homologous genes, such as terminal oxidase genes.Rhodopseudomonas bacteria have a photosynthetic reaction center containing bacteriochlorophyll b that was first found in 1963 and classified 3 years later and have a range of metabolic processes (Lang and Oesterhelt 1989). R. viridis is an anaerobic, photosynthetic bacterium that has microaerophilic growth capacity. It is one of the most metabolically versatile bacteria known with the ability to convert carbon dioxide gas into cell mass and nitrogen gas into ammonia and hydrogen gas. R. palustris has an interesting reproduction through budding and asymmetric cell division: one daughter cell is a motile swarmer cell and the other is a stalked nonmotile cell. Another major developmental process of R. palustris is the differentiation of ""an elaborate system of intracytoplasmic membrane vesicles when cells run out of oxygen and are placed in light"" (DOE). These intracytoplasmic membranes, which are named thylakoids, contain the photosynthetic reaction centers and occur only in anaerobic conditions. The thylakoids are integral membrane protein-reaction center complexes that catalyze light-induced electron transport through the photosynthetic membrane. (Lang and Oesterhelt 1989) They also house photosynthetic pigments and associated proteins (DOE). Also during anaerobic conditions, R. palustris increases its biomass by absorbing carbon dioxide and ""degrading organic compounds including such toxic compounds as 3-chlorobenzoateto cellular building blocks"" (DOE). When oxygen is available, the bacterium degrades several types of carbon-containing compounds like sugars, lignin, monomers, and methanol through respiration (DOE).Studies have shown that Rhodopseudomonas viridis grows well at 30C in light under at a 13 hour generation and under microaerophilic growth conditions in the dark at a 24 hour generation time. In addition, the bacterium did not grow anaerobically in the darkness or aerobically in the light. The bacterium was able to use dimethyl sulfoxide, potassium nitrate, or sodium nitrite as a terminal electron acceptor instead of oxygen. (Lang and Oesterhelt 1989) In general, this bacterium can be found in many different soils and marine environments.Rhodopseudomonas palustris, along with Rhodospirillum rubrum and Rhodospirillum photometricum, grow phototrophically on several two- and three-carbon halocarboxylic acids in the presence of CO2 through reductive dehalogenation and assimilation of the resulting acid. This ability to utilize halocarboxylic acids suggests that they might be able to assist in the removal of these enironmental pollutants from illuminated anaerobic habitats like lakes, waste lagoons, sediments of ditches and ponds, mud, and moise soil (McGrath and Harfoot 1997). This bacterium also has the ability to convert N2 into NH4 and H2, which can be used as a biofuel.(From http://microbewiki.kenyon.edu/index.php/Rhodopseudomonas) (MicrobeWiki: Rhodopseudomonas)" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris CGA009 Negative Bacilli Yes 1 2 Facultative 25 Phototroph Mesophilic Multiple Free living Singles No 258594 NZ_CP116810.1 Bac0017405 Streptomyces sp. FXJ1.172 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. FXJ1.172 710705 NZ_CP119133.2 Bac0017406 Agrobacterium tumefaciens strain CFBP5506 "Agrobacterium tumefaciens strain CFBP5506 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. This strain is part of the Agrobacterium genus, which is known for its capacity to interact with various plant species. Its habitat encompasses multiple environments, suggesting a degree of ecological versatility that could facilitate its survival and proliferation in diverse niches.↵↵The rod shape and aerobic nature of A. tumefaciens CFBP5506 indicate its adaptation to environments where oxygen is readily available, potentially influencing its interactions with plant hosts and other microorganisms. This strain's metabolic capabilities, typical of many members of the Agrobacterium genus, may allow it to exploit organic compounds found in its habitat, contributing to nutrient cycling.↵↵Overall, the ecological implications of A. tumefaciens CFBP5506's traits suggest that it may play a significant role in soil health and the dynamics of plant-microbe interactions, particularly in environments where it can efficiently colonize plant tissues and contribute to the complex web of microbial life. Further studies could elucidate its specific ecological roles and contributions to plant health and soil fertility." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 NZ_CP122963.1 Bac0017407 Curtobacterium sp. MCSS17_016 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCSS17_016 2175644 NZ_CP126254.1 Bac0017408 Curtobacterium sp. MCSS17_015 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCSS17_015 2175666 NZ_CP126256.1 Bac0017409 Curtobacterium sp. MCLR17_032 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_032 2175650 NZ_CP126268.1 Bac0017410 Curtobacterium sp. MCLR17_031 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_031 2175622 NZ_CP126270.1 Bac0017411 Globicatella sanguinis strain UMB0514 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Globicatella Globicatella sanguinis microaerophile 13076 NZ_CP126962.1 Bac0017412 Gleimia hominis strain UMB0859 "Gleimia hominis strain UMB0859 is a Gram-negative, non-spore-forming rod that exhibits microaerophilic growth characteristics. This strain has an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of the human body, suggesting a potential association with human-associated environments. The microaerophilic nature of Gleimia hominis strain UMB0859 indicates that it thrives in conditions with reduced oxygen levels, which may reflect its ecological niche in anaerobic or low-oxygen habitats.↵↵The Gram-negative classification of this strain implies the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain protective advantages and influence its interaction with other microorganisms. The non-spore-forming trait suggests that this organism relies on other means of survival and reproduction, potentially limiting its resilience to extreme environmental conditions compared to spore-forming bacteria.↵↵The ability to grow optimally at human body temperature and under microaerophilic conditions may indicate that Gleimia hominis strain UMB0859 plays a role in microbial communities associated with human health or disease. Understanding the specific ecological interactions and metabolic pathways of this strain may provide insights into its potential functions in various microbiomes, particularly in relation to its adaptation to low-oxygen niches within human-associated environments. Further research into its ecological role could enhance our understanding of microbe-host interactions and the dynamics of human-associated microbial communities." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Gleimia Gleimia hominis Gram-negative rod non-motile microaerophile 37 mesophilic non-spore-forming 595468 NZ_CP126963.1 Bac0017413 Aerococcus loyolae strain UMB0509 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus loyolae 2976809 NZ_CP127213.1 Bac0017414 Mycobacterium sp. ITM-2016-00316 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. ITM-2016-00316 2099695 NZ_CP134398.1 Bac0017415 Corynebacterium pyruviciproducens strain UMB0763 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pyruviciproducens 598660 NZ_CP136958.1 Bac0017416 Limosilactobacillus reuteri strain MD IIE-43 "Limosilactobacillus reuteri strain MD IIE-43 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. As a facultative anaerobe, this strain is capable of surviving in both aerobic and anaerobic environments, which allows it to thrive in diverse habitats. The ability to adapt to varying oxygen levels may contribute to its resilience and versatility in different ecological niches.↵↵Limosilactobacillus reuteri is known for its probiotic properties, and strains within this species have been widely studied for their potential health benefits in various hosts, including humans and animals. The strain MD IIE-43, in particular, may be involved in the complex interactions within the gut microbiota, where its presence could influence the overall microbial community structure and function.↵↵Given its capability to inhabit multiple environments and its unique cell arrangement, Limosilactobacillus reuteri MD IIE-43 may play a significant role in the microbial dynamics of its ecosystem, possibly contributing to nutrient cycling or the modulation of host immune responses. Further research is warranted to elucidate the specific ecological roles and potential applications of this strain in health and biotechnology." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 NZ_CP137613.1 Bac0017417 Pantoea agglomerans strain CFBP13505 "Pantoea agglomerans strain CFBP13505 is a Gram-negative, nonsporulating rod-shaped bacterium characterized as a chemoheterotroph that thrives optimally at a temperature of 30.0°C. This strain is notable for its facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. Pantoea agglomerans is known to inhabit multiple ecological niches, suggesting a versatile lifestyle that may contribute to its survival in diverse habitats. ↵↵The facultative anaerobic nature of strain CFBP13505 indicates its ability to utilize both aerobic respiration and fermentation pathways, thereby enhancing its adaptability to fluctuating oxygen conditions. This adaptability is crucial in environments where oxygen availability can change, highlighting the strain's potential ecological role in nutrient cycling and organic matter decomposition. ↵↵Further studies on Pantoea agglomerans strain CFBP13505 may reveal insights into its interactions with other microorganisms within its habitats and its contributions to soil and plant health, reflecting the broader ecological significance of this bacterium in maintaining microbial diversity and ecosystem function." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 549 NZ_CP143520.1 Bac0017418 Enterococcus sp. 7F3_DIV0205 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Candidatus Enterococcus palustris 1834189 NZ_CP147244.1 Bac0017419 Enterococcus sp. 12C11_DIV0727 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Candidatus Enterococcus lemimoniae 1834167 NZ_CP147248.1 Bac0017420 Sporomusa silvacetica DSM 10669 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporomusa Sporomusa silvacetica anaerobic 1123289 NZ_CP155573.1 Bac0017421 Acetivibrio thermocellus strain PAL5 "Acetivibrio thermocellus strain PAL5 is a Gram-positive, rod-shaped bacterium that exhibits a versatile cell arrangement, occurring in pairs, singles, and chains. This strain thrives optimally at a temperature of 60.0°C and functions as a chemoorganotroph, utilizing organic compounds as its energy source. Adapted to various habitats, Acetivibrio thermocellus strain PAL5 is strictly anaerobic, indicating its metabolic processes occur in the absence of oxygen.↵↵The ability of this microbe to grow at elevated temperatures suggests it may play a significant role in thermophilic environments, potentially contributing to biochemical processes such as fermentation in high-temperature ecosystems. Its chemoorganotrophic lifestyle allows it to exploit a range of organic substrates, which may be critical for nutrient cycling in anaerobic habitats. Overall, the traits of Acetivibrio thermocellus strain PAL5 highlight its potential importance in biogeochemical processes and its adaptability to diverse ecological niches." Bacillati Bacillota Clostridia Acetivibrionales Acetivibrionaceae Acetivibrio Acetivibrio thermocellus Positive Rod Yes 1 Anaerobe 60 Chemoorganotroph Thermophilic Multiple Free living Pairs - Singles - Chains 1515 NZ_CP163137.1 Bac0017422 Vibrio cyclitrophicus strain 10N.222.46.E12 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cyclitrophicus 47951 NZ_CP170589.1 Bac0017423 Escherichia coli Nissle 1917 "Escherichia coli Nissle 1917 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized as a heterotrophic aerobe. This strain of E. coli was originally isolated from the feces of a healthy soldier during World War I and has since been studied for its potential beneficial effects on human health, particularly in relation to gut microbiota. ↵↵E. coli Nissle 1917 thrives in multiple habitats, suggesting a versatile adaptability to various environmental conditions, which may include the human gastrointestinal tract. As a heterotroph, it derives its energy from organic compounds, enabling it to utilize a range of substrates for growth. ↵↵The ability of E. coli Nissle 1917 to flourish in aerobic conditions highlights its potential role in maintaining healthy microbial communities, as oxygen availability can influence metabolic processes and interactions with other gut microorganisms. This strain has been investigated for its probiotic properties, particularly in the context of gastrointestinal health, where it may contribute to the modulation of gut flora and support immune function. ↵↵The ecological insight provided by E. coli Nissle 1917's adaptability and metabolic versatility underscores its potential significance in the human microbiome, offering avenues for further research into its role in health and disease prevention." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 316435 NZ_CP171242 Bac0017424 Rhizobium leguminosarum strain Vaf12 "Rhizobium leguminosarum strain Vaf12 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain exhibits a chemoheterotrophic mode of metabolism, utilizing organic compounds for energy and carbon. As an aerobe, it requires oxygen for its growth and metabolic processes, positioning it well within soil environments where oxygen availability is favorable.↵↵The habitat of R. leguminosarum strain Vaf12 is primarily soil, where it plays a critical role in the nitrogen cycle, particularly in symbiotic relationships with leguminous plants. While specific symbiotic capabilities of strain Vaf12 have not been detailed, members of the Rhizobium genus are well-known for their ability to form nodules on the roots of legumes, facilitating nitrogen fixation. This symbiosis is essential not only for enhancing soil fertility but also for supporting plant health and agricultural productivity.↵↵The ecological significance of Rhizobium leguminosarum strain Vaf12 may extend beyond its role in nitrogen fixation, as soil-dwelling microbes contribute to nutrient cycling and the overall health of soil ecosystems. Understanding the specific interactions and contributions of this strain within its habitat could provide deeper insights into soil microbiology and sustainable agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 NZ_CP171845.1 Bac0017425 Pseudorhizobium banfieldiae strain NT-26 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Pseudorhizobium Pseudorhizobium banfieldiae 1125847 NZ_FO082820.1 Bac0017426 Oleispira antarctica strain RB-8 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Oleispira Oleispira antarctica 698738 NZ_FO203512.1 Bac0017427 Xenorhabdus poinarii G6 "Xenorhabdus poinarii G6 is a Gram-positive, rod-shaped bacterium that demonstrates the ability to form spores, positioning it as a resilient microorganism within its ecological niche. This species thrives optimally at 37.0°C, suggesting a preference for conditions often found in warm-blooded hosts or specific environmental settings that mimic this temperature. Notably, X. poinarii G6 exhibits anaerobic growth, indicating that it does not require oxygen for its metabolic processes, which may provide advantages in low-oxygen environments, such as those encountered in soil or within decaying organic matter.↵↵The spore-forming capability of X. poinarii G6 enhances its survival under adverse conditions, allowing it to withstand environmental stresses that may be encountered in its habitat. This trait, combined with its specific temperature preference and anaerobic metabolism, suggests a complex adaptation to its surroundings, potentially involving interactions with other microorganisms or its environment that promote its survival and proliferation.↵↵Understanding the ecological role of *Xenorhabdus poinarii* G6 in nutrient cycling or its potential interactions within microbial communities remains an area of interest. Its adaptations may enable it to play a significant part in the decomposition of organic matter or in symbiotic relationships, highlighting the intricate balance of microbial life in diverse ecosystems. Further research could elucidate its functional contributions to such ecological processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Xenorhabdus Xenorhabdus poinarii Gram-positive rod motile anaerobic 37 mesophilic spore-forming 1354304 NZ_FO704551.1 Bac0017428 Klebsiella pneumoniae strain Kp52.145 "Klebsiella pneumoniae strain Kp52.145 is a Gram-negative, nonsporulating rod-shaped bacterium that typically arranges itself in chains, pairs, or as single cells. This strain thrives optimally at 37.0°C, which aligns with its habitat as a host-associated microbe, suggesting a potential adaptation to the warm environment of a mammalian host. As a chemoheterotroph, Kp52.145 utilizes organic compounds for energy, which is characteristic of many bacteria that inhabit nutrient-rich environments, such as those found within the human body or associated with other warm-blooded organisms.↵↵Klebsiella pneumoniae is known for its facultative anaerobic metabolism, allowing it to survive in both aerobic and anaerobic conditions. This flexibility may provide a competitive advantage in varied host environments, where oxygen levels can fluctuate significantly. The adaptability of Kp52.145 to different oxygen conditions, combined with its specific thermal preferences, positions this strain as a potentially successful colonizer of host tissues, where it may play roles in both symbiotic relationships and, under certain circumstances, in pathogenic interactions.↵↵Understanding the ecological niche and metabolic capabilities of Klebsiella pneumoniae strain Kp52.145 can inform strategies for managing its presence in clinical settings and for understanding its role within the microbiome of host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_FO834905.1 Bac0017429 Ruminococcus bicirculans (ex Wegman et al. 2014) strain 80/3 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bicirculans (ex Wegman et al. 2014) 1160721 NZ_HF545616.1 Bac0017430 Formosa agariphila KMM 3901 strain type strain: KMM 3901 "Formosa agariphila KMM 3901 is a Gram-negative, rod-shaped bacterium characterized as a non-spore-forming organism that exhibits facultative aerobe/anaerobe metabolic capabilities. This strain thrives optimally at a temperature of 16.0 °C, indicating a preference for moderate thermal conditions. The facultative nature of its oxygen requirement suggests that F. agariphila KMM 3901 can adapt to varying oxygen levels, allowing it to occupy diverse ecological niches, particularly in environments where oxygen availability fluctuates.↵↵The unique combination of its Gram-negative classification and rod shape positions F. agariphila KMM 3901 within a specific morphological and physiological framework typical of certain aquatic microorganisms. This adaptability in oxygen utilization and temperature suggests potential roles in biogeochemical cycles, especially in cold marine or brackish environments where organic matter decomposition may occur. The ability of this strain to thrive under both aerobic and anaerobic conditions may contribute to its ecological success in nutrient-rich habitats, enabling it to interact dynamically with other microbial communities. Thus, Formosa agariphila KMM 3901 exemplifies the versatility of certain microorganisms in adapting to fluctuating environmental conditions, which could have implications for understanding microbial dynamics in aquatic ecosystems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Formosa Formosa agariphila Gram-negative rod motile facultative aerobe/anaerobe 16 psychrotolerant non-spore-forming 1347342 NZ_HG315671.1 Bac0017431 Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium agaricidamnosum 1349767 NZ_HG322949.1 Bac0017432 Pseudomonas knackmussii B13 "Pseudomonas knackmussii B13 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions and has an optimal growth temperature of 32.0 °C. This microbe's Gram-negative classification indicates a unique cell wall structure characterized by an outer membrane containing lipopolysaccharides, which may contribute to its resilience in various environments. The rod shape of P. knackmussii B13 is typical of the Pseudomonas genus, which is known for its metabolic versatility.↵↵This strain’s aerobic requirement suggests that it relies on oxygen for its energy production, potentially positioning it as a key player in environments where oxygen is available, such as soil or water bodies. The optimal growth temperature of 32.0 °C hints at its adaptability to moderate thermal conditions, which may facilitate its survival in temperate ecosystems.↵↵Given the metabolic capabilities characteristic of Pseudomonas species, P. knackmussii B13 may engage in the degradation of various organic compounds, thereby playing a role in bioremediation processes. This trait could be particularly beneficial in environments contaminated with organic pollutants, as its aerobic metabolism might enhance the breakdown of such materials. Overall, the ecological prominence of Pseudomonas knackmussii B13 likely extends to its involvement in nutrient cycling and its potential application in environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas knackmussii Gram-negative rod aerobic 32 mesophilic 1301098 NZ_HG322950.1 Bac0017433 Ectopseudomonas oleovorans CECT 5344 strain CECT5344 "Ectopseudomonas oleovorans CECT 5344 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and requires aerobic conditions for growth. This strain thrives optimally at a temperature of 30.0 °C and is characterized by its nonsporulating nature, which indicates that it does not form spores as a means of survival under unfavorable conditions.↵↵The habitat of E. oleovorans CECT 5344 is diverse, suggesting its adaptability to various environments. As an aerobe, it utilizes oxygen for its metabolic processes, which may confer advantages in oxygen-rich niches. Its chemoheterotrophic lifestyle indicates that this organism relies on organic compounds as both carbon and energy sources, potentially allowing it to exploit a wide range of substrates in its environment.↵↵The presence of E. oleovorans CECT 5344 in multiple habitats may reflect its ecological versatility and its role in biogeochemical cycles, particularly in the degradation of organic pollutants. This strain could be significant in bioremediation efforts, where its metabolic capabilities may be harnessed to clean up contaminated environments. Understanding the specific ecological roles and interactions of this microbe could provide insights into its potential applications in environmental microbiology and biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas oleovorans Negative Rod Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1182590 NZ_HG916826.1 Bac0017434 Rhizobium favelukesii strain LPU83 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium favelukesii 348824 NZ_HG916852.1 Bac0017435 Clostridium bornimense strain M2/40 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium bornimense anaerobic 1216932 NZ_HG917868.1 Bac0017436 Mucinivorans hirudinis "Mucinivorans hirudinis is a Gram-negative, rod-shaped bacterium that thrives in the anaerobic environment of the digestive tract. This microbe is characterized by its capacity to degrade mucin, a glycoprotein component of mucus, which suggests a specialized adaptation to its niche within the gastrointestinal system. As an anaerobe, M. hirudinis relies on fermentation processes for energy production, highlighting its role in the complex microbial ecosystem of the gut. ↵↵The presence of Mucinivorans hirudinis in the digestive tract may play a significant role in the breakdown of mucosal barriers, potentially influencing nutrient availability and microbial interactions within the gut microbiome. Its ability to metabolize mucus components may also affect host-microbe interactions, contributing to the overall health and functionality of the gastrointestinal system. Understanding the specific metabolic pathways and interactions of M. hirudinis could provide insights into its ecological significance and its potential role in maintaining gut homeostasis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Mucinivorans Mucinivorans hirudinis negative Rod anaerobic mesophilic digestive tract 1433126 NZ_HG934468.1 Bac0017437 Neorhizobium galegae bv. orientalis str. HAMBI 540 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium galegae 1028800 NZ_HG938353.1 Bac0017438 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Neorhizobium Neorhizobium galegae 1028801 NZ_HG938356.1 Bac0017439 Escherichia coli O25b:H4-ST131 strain EC958 "Escherichia coli O25b:H4-ST131 strain EC958 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, and thrives in aerobic conditions, requiring oxygen for its metabolic processes. E. coli O25b:H4-ST131 is known to inhabit a variety of environments, indicating its ecological versatility and adaptability. ↵↵While the precise ecological niches of strain EC958 are not specified, the general presence of E. coli in diverse habitats, such as the intestines of warm-blooded animals and the environment, suggests that this strain may play roles in nutrient cycling and microbial community dynamics. Its ability to survive in multiple habitats may also facilitate interactions with other microbial species, potentially influencing local microbiomes. Understanding the environmental resilience and metabolic capabilities of E. coli O25b:H4-ST131 can provide insights into its ecological impact and the broader implications for microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 941322 NZ_HG941718 Bac0017440 Candidatus Phaeomarinobacter ectocarpi strain Ec32 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Parvibaculaceae Candidatus Phaeomarinibacter Candidatus Phaeomarinibacter ectocarpi 1458461 NZ_HG966617.1 Bac0017441 Bartonella henselae strain BM1374165 "Bartonella henselae strain BM1374165 is a Gram-negative bacterium known for its association with guano habitats. This strain falls within the Bartonella genus, which comprises a group of bacteria often identified in various ecological niches, including those enriched by animal waste. The presence of guano as its habitat suggests that strain BM1374165 may thrive in nutrient-rich environments that provide organic matter, potentially supporting its metabolic needs.↵↵As a member of the Bartonella genus, B. henselae has been studied for its associations with mammals, particularly in relation to vector-borne transmission. The ecological significance of this strain may lie in its role within guano ecosystems, where it could interact with diverse microbial communities and contribute to nutrient cycling. The guano environment not only supports the bacterium's growth but may also influence its interactions with other microorganisms and host organisms, highlighting the interconnectedness of microbial life within this habitat.↵↵Understanding the specific adaptations of B. henselae strain BM1374165 to its guano habitat could provide insights into its ecological niches and potential interactions with other microbial species, enhancing our knowledge of microbial diversity and ecosystem functioning in environments influenced by animal waste." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella henselae negative guano 38323 NZ_HG969191.1 Bac0017442 Vibrio owensii strain TBV006 "Vibrio owensii strain TBV006 is a Gram-negative bacterium that inhabits marine environments, specifically associated with coral-related macroalgal symbiomes within the Changjiang estuary and intertidal zones. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions typically found in its natural habitat.↵↵The association of V. owensii strain TBV006 with coral-associated macroalgae suggests potential roles in nutrient cycling and interactions within the complex marine ecosystem of the Changjiang estuary. Such interactions may be critical for the health and stability of coral reef systems, particularly in light of environmental changes that could affect oxygen levels and macroalgal growth. The ability to adapt to both aerobic and anaerobic conditions indicates a versatile metabolic capacity, which could enhance its survival and functional contributions in fluctuating marine environments.↵↵Further investigation into the specific interactions of Vibrio owensii strain TBV006 with its macroalgal hosts and surrounding microbiota may provide insights into its ecological roles and potential benefits to coral reef health, particularly in nutrient-rich estuarine settings. Understanding these dynamics is essential for elucidating the broader impacts of microbial life in marine ecosystems, especially in regions experiencing environmental stressors." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio owensii negative 1 facultative anaerobe Changjiang estuary; coral-associated macroalgae symbiome; intertidal zone; Marine Animal 696485 NZ_JBEEAZ000000000.1 Bac0017443 Rickettsia tamurae subsp. buchneri strain ISO7 "Rickettsia tamurae subsp. buchneri strain ISO7 is a Gram-negative, rod-shaped bacterium that is non-spore-forming, with an optimal growth temperature of 32.0°C. This strain is part of the genus Rickettsia, which is known for its obligate intracellular lifestyle, typically requiring host cells for replication. While the specific ecological niche of strain ISO7 is not detailed, members of the Rickettsia genus are often associated with arthropod vectors, suggesting potential interactions within complex ecological systems.↵↵Given its rod shape and Gram-negative classification, R. tamurae subsp. buchneri strain ISO7 may exhibit characteristics typical of the Rickettsiales order, such as a unique outer membrane structure composed of lipopolysaccharides. The preference for an optimal growth temperature of 32.0°C may indicate an adaptation to specific environmental conditions, possibly aligning with the thermal preferences of its natural hosts or vectors. ↵↵Further research into this strain could provide insights into its role within microbial communities and its interactions with hosts, potentially revealing ecological dynamics and evolutionary adaptations of Rickettsia species in their natural environments. Understanding these relationships could enhance our comprehension of the ecological roles of obligate intracellular bacteria and their influences on host populations and ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia tamurae Gram-negative rod non-motile 32 mesophilic non-spore-forming 1462938 NZ_JFKF01000199.1 Bac0017444 Peptoclostridium litorale DSM 5388 strain W6 Bacillati Bacillota Clostridia Peptostreptococcales Peptoclostridiaceae Peptoclostridium Peptoclostridium litorale 1121324 NZ_JJMM01000001.1 Bac0017445 Streptomyces griseus subsp. griseus strain NRRL WC-3645 "Streptomyces griseus subsp. griseus strain NRRL WC-3645 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, relying on organic compounds as its energy source, which suggests a versatile metabolic capability. As an aerobic microbe, it requires oxygen for growth and respiration, indicating its adaptation to environments where oxygen is readily available.↵↵Streptomyces species, including this particular strain, are often found in diverse habitats, which may include soil, decaying plant material, or other organic-rich environments. This broad habitat range reflects the organism's ecological role in nutrient cycling and organic matter decomposition. ↵↵The presence of strain NRRL WC-3645 in multiple habitats underscores its potential importance in various microbiological applications, including bioremediation and natural product discovery. Additionally, the unique metabolic pathways that Streptomyces species possess, which can lead to the production of antibiotic compounds, may be of particular interest in pharmaceutical research. Overall, the ecological versatility and metabolic diversity of Streptomyces griseus subsp. griseus strain NRRL WC-3645 position it as a valuable organism for further studies in microbiology and biotechnology." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseus Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 67263 NZ_JOJE00000000.1 Bac0017446 Helicobacter pylori strain 1198/04 "Helicobacter pylori strain 1198/04 is a Gram-negative bacterium characterized by its spirilla shape and arrangement in singles. This strain thrives in microaerophilic conditions, indicating a requirement for reduced oxygen levels, which aligns with its adaptation to the gastric environment of its host. The optimal growth temperature for H. pylori strain 1198/04 is approximately 37.0°C, further supporting its association with warm-blooded hosts.↵↵As a member of the Helicobacter genus, this strain is primarily found in the gastric mucosa of humans and other mammals, reflecting its specialized habitat as host-associated. The unique morphology of H. pylori, combined with its microaerophilic nature, suggests a sophisticated adaptation that allows it to colonize and persist in the acidic environment of the stomach, where it can influence local microbial communities and host physiology.↵↵Understanding the specific traits of Helicobacter pylori strain 1198/04 may provide insights into its ecological roles and interactions within the gastric microbiome. For instance, its ability to survive and thrive in a low-oxygen, acidic environment may contribute to its ecological niche, potentially influencing gastric health and disease dynamics in its host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_JSXT01000054.1 Bac0017447 [Clostridium] cellulosi Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminiclostridium [Clostridium] cellulosi 29343 NZ_LM995447.1 Bac0017448 Peptoniphilus sp. ING2-D1G Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus sp. ING2-D1G 1912856 NZ_LM997412.1 Bac0017449 Aliivibrio wodanis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Aliivibrio Aliivibrio wodanis 80852 NZ_LN554850.1 Bac0017450 Acetobacter ghanensis strain LMG 23848T Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter ghanensis TV samples 431306 NZ_LN609303.1 Bac0017451 Legionella fallonii LLAP-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella fallonii 1212491 NZ_LN614827.1 Bac0017452 Legionella hackeliae strain ATCC 35250 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella hackeliae 449 NZ_LN681226.1 Bac0017453 Paraclostridium sordellii strain JGS6382 "Paraclostridium sordellii strain JGS6382 is a Gram-positive, rod-shaped bacterium that exhibits sporulating capabilities and is classified as a chemoheterotroph. This microbe thrives in anaerobic environments, suggesting it has evolved mechanisms to metabolize organic compounds in the absence of oxygen. Its natural habitat is soil, where it likely plays a role in the decomposition of organic matter, contributing to nutrient cycling within the ecosystem.↵↵The ability of P. sordellii strain JGS6382 to form spores allows it to withstand adverse environmental conditions, including desiccation and nutrient scarcity, thus enhancing its survival and persistence in soil habitats. As a chemoheterotroph, it derives energy from complex organic materials, which may include plant debris and other organic substrates found in the soil matrix.↵↵Overall, the traits of Paraclostridium sordellii strain JGS6382 reflect its adaptation to a specialized ecological niche, where it potentially contributes to soil health and fertility through its metabolic processes. Further studies could elucidate the specific roles it plays in soil ecosystems and its interactions with other microbial communities." Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Paraclostridium Paraclostridium sordellii Positive Rod No 1 Anaerobic Chemoheterotroph Mesophilic Soil Sporulating 1505 NZ_LN681235.1 Bac0017454 Lactococcus piscium MKFS47 "Lactococcus piscium MKFS47 is a Gram-positive, nonsporulating bacterium characterized by its cocci shape and arrangement in chains. This species is part of the Lactococcus genus, which is predominantly known for its role in fermentation processes. As a nonsporulating organism, L. piscium MKFS47 does not form spores, which may influence its survival strategies and ecological interactions in various environments.↵↵The chain arrangement of L. piscium MKFS47 may facilitate its ability to adhere to surfaces, potentially playing a role in its ecological niche. This characteristic is often observed in bacteria that inhabit nutrient-rich environments, suggesting that L. piscium MKFS47 may thrive in specific habitats where it can utilize available resources effectively. ↵↵Understanding the physiological traits and structural characteristics of L. piscium MKFS47 can provide insights into its potential applications in food microbiology, particularly in dairy fermentation processes. The organism's nonsporulating nature may also affect its interactions with other microorganisms, influencing microbial community dynamics in its natural or industrial environments. Further studies on this strain could reveal its specific contributions to fermentation and its overall ecological role within microbial consortia." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus piscium Positive Cocci No 1 Chains Nonsporulating 297352 NZ_LN774771.1 Bac0017455 Candidatus Methylopumilus turicensis strain MMS-10A-171 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Candidatus Methylopumilus Candidatus Methylopumilus turicensis 1581680 NZ_LN794158.1 Bac0017456 Halomonas sp. R57-5 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. R57-5 1610576 NZ_LN813019.1 Bac0017457 Candidatus Filomicrobium marinum strain strain Y Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Filomicrobium Candidatus Filomicrobium marinum 1608628 NZ_LN829119.1 Bac0017458 Mycolicibacterium smegmatis strain NCTC8159 "Mycolicibacterium smegmatis strain NCTC8159 is a Gram-positive, rod-shaped bacterium that exists as single cells. This strain is classified as a chemoorganotroph, utilizing organic compounds as its energy source. It is an aerobic organism, requiring oxygen for its metabolic processes, and thrives best at an optimal temperature of 37.0°C, which aligns with the typical physiological conditions of many host-associated environments.↵↵As a member of the Mycolicibacterium genus, M. smegmatis is often studied for its relevance in various biological and medical contexts, particularly due to its association with host organisms. This bacterium is commonly found in environments such as skin, where it may play a role in the complex microbial communities present. The ability of M. smegmatis to adapt to aerobic conditions and utilize organic matter suggests its potential involvement in nutrient cycling within its habitats. ↵↵The presence of M. smegmatis in host-associated environments highlights its ecological significance, as it may contribute to the maintenance of microbial diversity and the dynamics of host-microbe interactions. Further investigations could provide insights into its role in these ecosystems and its potential applications in biotechnology and microbiology." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium smegmatis Positive Rod No 1 1 Aerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1772 NZ_LN831039.1 Bac0017459 Synechococcus sp. WH 8103 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. WH 8103 29410 NZ_LN847356.1 Bac0017460 Alloactinosynnema sp. L-07 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Alloactinosynnema Alloactinosynnema sp. L-07 1653480 NZ_LN850107.1 Bac0017461 Nocardia farcinica strain NCTC11134 "Nocardia farcinica strain NCTC11134 is a Gram-positive, coccoid bacterium that forms filamentous structures and is classified as a chemoheterotroph. This strain thrives in aerobic environments and is typically found in soil habitats, where it likely plays a role in the degradation of organic matter. Optimal growth occurs at a temperature of 37.0°C, which is consistent with its adaptation to terrestrial ecosystems where temperature can vary but often reaches this range.↵↵As a nonsporulating organism, N. farcinica strain NCTC11134 relies on its filamentous growth form to enhance nutrient absorption and survival in competitive soil environments. The filamentous arrangement may provide advantages in colonization and resource utilization, allowing the organism to efficiently exploit its ecological niche. This unique morphology, combined with its metabolic capabilities, suggests that N. farcinica may play an important role in nutrient cycling within its habitat, contributing to soil health and biodiversity.↵↵Overall, the traits exhibited by Nocardia farcinica strain NCTC11134 illustrate its adaptation to soil environments and its potential ecological significance as a microbial decomposer, highlighting the intricate interactions that occur within terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia farcinica Positive Cocci No 1 1 Aerobe 37 Chemoheterotroph Mesophilic Soil Free living Filaments Nonsporulating 37329 NZ_LN868940.1 Bac0017462 Herbinix luporum strain SD1D "Herbinix luporum strain SD1D is a Gram-positive, non-spore-forming bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 45.0°C. This strain's Gram-positive nature indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in specific environmental conditions. The inability to form spores suggests that this microbe may rely on alternative survival strategies under adverse conditions, such as metabolic versatility or the ability to enter a viable but non-culturable state.↵↵The optimal temperature of 45.0°C suggests that Herbinix luporum strain SD1D is well adapted to thermophilic environments, potentially influencing its habitat preferences. Such a temperature requirement may indicate a niche in hot springs, compost piles, or other thermally enriched environments where anaerobic conditions prevail. ↵↵This strain's anaerobic requirement highlights its potential role in biogeochemical cycles, particularly in the degradation of organic matter under low-oxygen conditions. The metabolic processes employed by Herbinix luporum strain SD1D could be significant in the breakdown of complex organic compounds, thus contributing to nutrient cycling in thermophilic ecosystems. Overall, the unique combination of traits in this strain points to its potential involvement in anaerobic processes in high-temperature environments, which could provide insights into microbial adaptation and ecosystem functioning under extreme conditions." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Herbinix Herbinix luporum Gram-positive non-motile anaerobic 45 thermophilic non-spore-forming 1679721 NZ_LN879430.1 Bac0017463 Candidatus Protochlamydia naegleriophila strain KNic Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila 389348 NZ_LN879503.1 Bac0017464 Nitrosotalea devaniterrae Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea devaniterrae 1078905 NZ_LN890280.1 Bac0017465 Candidatus Promineifilum breve strain Cfx-K Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Candidatus Promineifilum breve 1806508 NZ_LN890656.1 Bac0017466 Candidatus Ichthyocystis hellenicum Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Candidatus Ichthyocystis Candidatus Ichthyocystis hellenicum 1561003 NZ_LN906597.1 Bac0017467 Helicobacter typhlonius strain MIT 97-6810 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter typhlonius microaerophile 76936 NZ_LN907858.1 Bac0017468 Brucella sp. F60 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella vulpis 981386 NZ_LN997864.1 Bac0017469 Raoultella terrigena strain NCTC13098 "Raoultella terrigena strain NCTC13098 is a Gram-negative, rod-shaped bacterium that is categorized as a facultative anaerobe. This microbe is notably versatile in its ecological niches, having been identified in freshwater, milk, plants, and soil environments. The ability to thrive in both aerobic and anaerobic conditions suggests that R. terrigena has adapted to various habitats, enabling it to exploit diverse carbon sources available in its surroundings.↵↵The presence of R. terrigena in freshwater ecosystems highlights its potential role in nutrient cycling, particularly in the degradation of organic matter. Moreover, its occurrence in milk and on plant surfaces indicates that it may interact with other microorganisms and contribute to the microbial community dynamics in these environments. These traits suggest that R. terrigena could play a role in the maintenance of microbial diversity and the promotion of ecosystem resilience, underscoring the importance of understanding its ecological functions in the habitats it occupies. Further research into its metabolic capabilities and interactions within these habitats could provide insights into its ecological significance and potential applications in bioremediation or agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella terrigena negative Rod facultative anaerobe Fresh water; milk; plants; soil 577 NZ_LR131271.1 Bac0017470 Arthrobacter agilis strain NCTC2676_1 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter agilis 37921 NZ_LR131272.1 Bac0017471 Morganella morganii strain NCTC235 "Morganella morganii strain NCTC235 is a Gram-negative, rod-shaped bacterium that thrives in natural environments, particularly in sewage. This strain is classified as a facultative anaerobe, indicating its versatile metabolic capabilities, allowing it to grow in both the presence and absence of oxygen. ↵↵Morganella morganii is known for its ability to adapt to various environmental conditions, which may contribute to its persistence in diverse habitats, particularly those associated with organic matter decomposition, such as sewage systems. The bacterium's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interactions with other microorganisms and its resilience in challenging environments.↵↵Understanding the ecological role of Morganella morganii, especially in sewage, can shed light on its potential contributions to biogeochemical cycles and microbial community dynamics. The presence of this strain in sewage indicates its involvement in the breakdown of organic matter and nutrient cycling, which are crucial processes in maintaining the health of aquatic ecosystems. Further studies could elucidate the specific interactions of Morganella morganii within microbial communities, enhancing our understanding of its ecological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Rod Facultative anaerobe mesophilic natural environment; sewage 582 NZ_LR133904.1 Bac0017472 Serratia odorifera strain NCTC11214 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia odorifera 618 NZ_LR134117.1 Bac0017473 Klebsiella aerogenes strain NCTC10006 "Klebsiella aerogenes strain NCTC10006 is a Gram-negative bacterium that is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is host-associated, which suggests a relationship with host organisms, potentially influencing its ecological role and interactions within host-associated microbiomes.↵↵As a member of the Enterobacteriaceae family, K. aerogenes is typically found in a variety of environments, including the gastrointestinal tracts of animals and humans. Its facultative anaerobic nature allows it to adapt to fluctuating oxygen levels, which is advantageous in diverse habitats, particularly those associated with host organisms where oxygen availability may vary.↵↵The Gram-negative cell wall structure of K. aerogenes contributes to its resilience and ability to evade certain host immune responses, though it is essential to note that specific pathogenic traits or clinical implications of strain NCTC10006 are not described in the provided traits. Understanding this strain's metabolic flexibility and host association can offer insights into its potential roles in microbial ecology, particularly in the context of gut microbiota dynamics and the maintenance of host health.↵↵Furthermore, the adaptability of K. aerogenes to different oxygen levels might play a crucial role in its survival and proliferation within the host, suggesting that it could influence nutrient absorption and metabolic processes in the host organism. This underscores the complex interplay between host-associated microbes and their environments, highlighting the importance of studying such strains to unravel potential symbiotic or competitive relationships within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella aerogenes Negative 1 Facultative anaerobe Mesophilic HostAssociated Free living 548 NZ_LR134121.1 Bac0017474 Salmonella bongori strain NCTC12419 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella bongori 54736 NZ_LR134137.1 Bac0017475 Kluyvera intermedia strain NCTC12125 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kluyvera Kluyvera intermedia 61648 NZ_LR134138.1 Bac0017476 Salmonella enterica subsp. enterica serovar Sanjuan strain "Salmonella enterica subsp. enterica serovar Sanjuan strain is a Gram-negative bacterium characterized by its spirilla shape and the formation of chains or singles in its cellular arrangement. This strain exhibits an optimal growth temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a chemoorganotroph, it derives energy from organic compounds, allowing it to thrive in nutrient-rich environments often found within host organisms.↵↵The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for optimal growth, which may reflect its ecological niche within the gastrointestinal tracts of animals. This specific oxygen requirement could confer a competitive advantage over other microorganisms in similar habitats, enabling S. enterica serovar Sanjuan to survive and proliferate under conditions that would be suboptimal for strictly aerobic or anaerobic organisms.↵↵The unique combination of traits observed in this strain underscores its potential role in the complex microbial communities associated with animal hosts, where it may contribute to various metabolic processes while also interacting with other microbial species. This intricate interplay within host-associated environments highlights the ecological significance of S. enterica serovar Sanjuan in the broader context of microbial dynamics and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 1160765 NZ_LR134142.1 Bac0017477 Serratia plymuthica strain NCTC8900 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia plymuthica 82996 NZ_LR134151.1 Bac0017478 Serratia rubidaea strain NCTC9419 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia rubidaea 61652 NZ_LR134155.1 Bac0017479 Klebsiella pneumoniae strain NCTC13635 "Klebsiella pneumoniae strain NCTC13635 is a Gram-negative, nonsporulating rod-shaped bacterium that typically exists in varied arrangements, including chains, pairs, and singles. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which it metabolizes in both aerobic and anaerobic conditions, as it is a facultative anaerobe. The optimal growth temperature for this strain is 37.0°C, aligning with the typical mammalian host body temperature, suggesting an adaptation to host-associated environments.↵↵Klebsiella pneumoniae is commonly found in the human microbiome, particularly in the gastrointestinal tract, and may be involved in various interactions with the host. Its facultative anaerobic nature allows it to thrive in diverse oxygen levels, making it versatile in fluctuating environmental conditions found within host tissues. This adaptability may play a role in its ecological niche, enabling it to exploit various organic substrates for growth. ↵↵Understanding the traits of Klebsiella pneumoniae strain NCTC13635 can provide insights into its metabolic capabilities and potential interactions with host organisms, emphasizing its significance in microbiological studies related to host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_LR134162.1 Bac0017480 Bacillus paralicheniformis strain NCTC8721 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus paralicheniformis 1648923 NZ_LR134165.1 Bac0017481 Avibacterium volantium strain NCTC3438 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Avibacterium Avibacterium volantium microaerophile 762 NZ_LR134167.1 Bac0017482 Chromobacterium violaceum strain NCTC9695 "Chromobacterium violaceum strain NCTC9695 is a facultatively anaerobic, Gram-negative coccus that thrives optimally at a temperature of 25.0°C. This strain, like other members of the Chromobacterium genus, is notable for its versatility in habitat, being capable of surviving in multiple environments. The coccus shape of this bacterium contributes to its unique physiological characteristics, which may influence its interaction with various ecosystems.↵↵The facultatively anaerobic nature of C. violaceum strain NCTC9695 indicates its ability to adapt to both aerobic and anaerobic conditions, allowing it to colonize diverse niches where oxygen levels may fluctuate. Such adaptability may confer advantages in environments rich in organic matter, where oxygen consumption can create anaerobic zones.↵↵Furthermore, the optimal growth temperature of 25.0°C suggests a preference for mesophilic conditions, aligning with many environmental habitats, such as soil and water, where temperatures typically fluctuate around this range. The ecological implications of this strain’s versatility and adaptability could be significant, particularly in biogeochemical cycling and potential bioremediation processes, as its metabolic capabilities may allow it to utilize various substrates in diverse habitats. Understanding the ecological role of C. violaceum strain NCTC9695 could provide insights into its potential applications in environmental microbiology and biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium violaceum Negative Cocci Yes 1 2 Facultatively anaerobe 25 Mesophilic Multiple 536 NZ_LR134182.1 Bac0017483 Citrobacter koseri strain NCTC11075 "Citrobacter koseri strain NCTC11075 is a Gram-negative bacterium classified within the family Enterobacteriaceae. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. C. koseri is known to inhabit a variety of ecological niches, which may include diverse substrates in soil, water, and the intestinal tracts of animals and humans. ↵↵The versatility of C. koseri in adapting to multiple habitats suggests a remarkable metabolic flexibility, enabling it to utilize a range of organic compounds for growth and energy production. This adaptability is characteristic of many members of the Enterobacteriaceae family, which often play significant roles in their respective ecosystems, including nutrient cycling and interactions with other microorganisms.↵↵Understanding the ecological roles of Citrobacter koseri strain NCTC11075 can provide insights into its potential contributions to microbial communities, particularly in environments where it may engage in symbiotic or competitive relationships. Further studies are required to elucidate the specific interactions and ecological functions of this strain within its various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter koseri Negative Yes 1 2 Facultatively anaerobe Mesophilic Multiple Free living 545 NZ_LR134204.1 Bac0017484 Klebsiella pneumoniae strain NCTC418 "Klebsiella pneumoniae strain NCTC418 is a nonsporulating, Gram-negative rod bacterium that typically exists in various arrangements, including chains, pairs, and singles. This strain is a chemoheterotroph, meaning it derives energy from organic compounds, and it thrives optimally at a temperature of 37.0°C, which aligns with the temperature commonly found in warm-blooded hosts. As a facultative anaerobe, K. pneumoniae can grow in both the presence and absence of oxygen, allowing it to adapt to different environmental conditions, particularly within host-associated habitats.↵↵In the context of its ecological role, K. pneumoniae strain NCTC418 may contribute to the complex microbial communities present in the human microbiome, where it can influence host health and disease dynamics. Understanding the growth characteristics and environmental adaptability of this strain can provide insights into its potential interactions within host ecosystems and its response to varying physiological conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 NZ_LR134210.1 Bac0017485 Citrobacter portucalensis strain NCTC11104 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter portucalensis 1639133 NZ_LR134214.1 Bac0017486 Klebsiella aerogenes strain NCTC9652 "Klebsiella aerogenes strain NCTC9652 is a Gram-negative bacterium that is primarily host-associated and exhibits facultative anaerobic metabolism. This strain, belonging to the Enterobacteriaceae family, is characterized by its ability to thrive in both aerobic and anaerobic environments, which allows it to adapt to various physiological niches within a host. ↵↵As a facultative anaerobe, K. aerogenes can utilize oxygen when available but is also capable of anaerobic respiration or fermentation in its absence. This metabolic versatility is crucial for survival in diverse environments, including those rich in organic matter, where oxygen levels may fluctuate. ↵↵The host-associated habitat of K. aerogenes suggests a possible role in the microbiota of various organisms, although the specific interactions and contributions to host physiology remain to be fully elucidated. Understanding the ecological role of K. aerogenes strain NCTC9652 could provide insights into its potential applications, including its use in biotechnological processes or its impact on host health. Further research into its metabolic pathways and interactions within microbial communities may reveal additional ecological functions that this strain fulfills in association with its hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella aerogenes Negative 1 Facultative anaerobe Mesophilic HostAssociated Free living 548 NZ_LR134224.1 Bac0017487 Klebsiella aerogenes strain NCTC8846 "Klebsiella aerogenes strain NCTC8846 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, utilizing chemoheterotrophic processes for energy. This strain thrives optimally at 37.0°C, aligning with the typical temperature of the human body, which suggests a potential association with warm-blooded hosts. ↵↵Klebsiella aerogenes, as a member of the Enterobacteriaceae family, is recognized for its ability to inhabit diverse environments, indicating a versatile ecological adaptability. The nonsporulating nature of this strain suggests that it relies on other mechanisms for survival and persistence in various habitats, rather than forming spores as a protective strategy. This trait may influence its ecological interactions and responses to environmental stresses.↵↵The facultative anaerobic capability of K. aerogenes allows it to thrive in both oxygen-rich and oxygen-poor environments, broadening its potential niches. Its presence in multiple habitats underscores its ecological flexibility, which may contribute to its prevalence in various environments, including clinical settings and natural ecosystems. The adaptability of K. aerogenes strain NCTC8846 to fluctuating oxygen levels and its metabolic versatility may play a crucial role in its survival and proliferation, especially in environments where nutrient availability varies. This adaptability further highlights the importance of studying such microbes in understanding microbial dynamics and their interactions within different ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella ornithinolytica Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 54291 NZ_LR134229.1 Bac0017488 Escherichia coli strain NCTC9044 "Escherichia coli strain NCTC9044 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli NCTC9044 can grow in both the presence and absence of oxygen, allowing it to colonize various environments within a host, including the gastrointestinal tract, where it plays a significant role in digestion and nutrient absorption.↵↵The ability of E. coli NCTC9044 to survive in diverse oxygen conditions is essential for its metabolic versatility, enabling it to utilize different substrates depending on the host's physiological state. This characteristic not only underlines its adaptability but also suggests a potential role in the dynamic microbial communities within the gut. The strain's specific ecological niche within a host may facilitate interactions with other microbial species, contributing to the overall homeostasis of the gut microbiome. Understanding these traits can provide insights into the functional roles that E. coli strains play in their respective environments and their contributions to host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_LR134238.1 Bac0017489 Staphylococcus warneri strain NCTC4133 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus warneri 1292 NZ_LR134242.1 Bac0017490 Escherichia coli strain NCTC9702 "Escherichia coli strain NCTC9702 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli NCTC9702 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, thereby enhancing its survival in diverse conditions within its host.↵↵The ability of E. coli NCTC9702 to inhabit the intestinal tract of its host contributes to its role in the gut microbiota, where it may participate in various metabolic processes, including the fermentation of carbohydrates and the synthesis of essential vitamins. Its facultative anaerobic nature provides a competitive advantage in fluctuating oxygen conditions found in the gut, allowing it to adapt to the dynamic environment of the gastrointestinal tract.↵↵Moreover, the presence of E. coli strains such as NCTC9702 within the microbiome may influence host health by modulating immune responses and competing with pathogenic microorganisms. Understanding the specific traits of this strain can provide insights into its ecological role and potential interactions within the microbiota, emphasizing the importance of E. coli in maintaining gut homeostasis and overall host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 NZ_LR134246.1 Bac0017491 Raoultella terrigena strain NCTC9997 "Raoultella terrigena strain NCTC9997 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is known to inhabit a variety of environments, including fresh water, milk, soil, and plant surfaces. The versatility in its habitat suggests an ecological adaptability that may play a role in nutrient cycling and interactions within diverse microbial communities.↵↵As a facultative anaerobe, R. terrigena can thrive in both aerobic and anaerobic conditions, providing it with a competitive advantage in fluctuating environments where oxygen availability may vary. This metabolic flexibility may enable the organism to exploit a range of substrates, contributing to its presence in various ecological niches.↵↵The isolation of R. terrigena from environments such as soil and plants highlights its potential role in soil health and plant-microbe interactions. Its presence in fresh water and milk suggests a capability for colonization in both terrestrial and aquatic ecosystems, which may have implications for nutrient dynamics and microbial diversity in these habitats. Further investigation into the ecological roles of R. terrigena could provide insights into its contributions to environmental processes and its interactions with other microorganisms in complex ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella terrigena negative Rod facultative anaerobe Fresh water; milk; plants; soil 577 NZ_LR134251.1 Bac0017492 Streptococcus viridans strain NCTC3166 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus viridans 78535 NZ_LR134266.1 Bac0017493 Streptococcus salivarius strain NCTC8618 "Streptococcus salivarius strain NCTC8618 is a Gram-positive bacterium characterized by its cocci shape and a typical arrangement in chains or pairs. This strain is nonsporulating, indicating that it does not form spores, which is a common feature among many members of the Streptococcus genus. As a facultative anaerobe, S. salivarius strain NCTC8618 can thrive in both aerobic and anaerobic environments, suggesting its adaptability to varying oxygen levels within its host-associated habitat.↵↵This strain is predominantly found in the oral cavity, where it plays a role in the complex microbial community of the human mouth. It is known for its potential beneficial effects, including the production of bacteriocins and other antimicrobial substances that may inhibit the growth of pathogenic bacteria. Given its ecological niche, S. salivarius strain NCTC8618 contributes to oral health by helping to maintain a balanced microbial ecosystem, which is crucial for preventing dysbiosis that can lead to dental caries and other oral diseases. Understanding the traits of this strain can provide insights into its functional role within the oral microbiome and its potential applications in probiotic therapies." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 NZ_LR134274.1 Bac0017494 Streptococcus anginosus strain NCTC10713 "Streptococcus anginosus strain NCTC10713 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C. This strain is classified as a chemoheterotroph, utilizing organic compounds as its primary energy source. It exhibits facultative anaerobic characteristics, allowing it to grow in both aerobic and anaerobic environments, which is particularly advantageous for its survival in diverse habitats.↵↵This microbe is part of the normal microbiota found in the host gut, where it plays a role in maintaining the balance of microbial communities. The presence of Streptococcus anginosus in the gut suggests its potential contribution to the fermentation processes and its involvement in the digestion of complex carbohydrates. ↵↵Given its habitat and metabolic capabilities, Streptococcus anginosus strain NCTC10713 may also interact with other gut microorganisms, influencing the overall gut microbiome dynamics. The ability to thrive in varying oxygen levels could further enhance its adaptability, allowing it to colonize different niches within the gut environment. Understanding the role of this strain in the gut ecosystem could provide insights into its potential contributions to gut health and microbial interactions." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating Human 1328 NZ_LR134283.1 Bac0017495 Pseudomonas fluorescens strain NCTC10783 "Pseudomonas fluorescens strain NCTC10783 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain demonstrates heterotrophic metabolism, utilizing organic compounds as its energy source, and thrives optimally at a temperature of 25.0°C. As an aerobic organism, it requires oxygen for its growth and metabolic processes. ↵↵Pseudomonas fluorescens is known for its versatile habitat, which spans a variety of environments, suggesting an adaptability to different ecological niches. This adaptability may contribute to its role in nutrient cycling and soil health, where it can interact with other microbial communities and contribute to the breakdown of organic matter. The strain's ability to flourish in diverse conditions highlights its ecological significance in various biogeochemical processes. ↵↵Overall, Pseudomonas fluorescens strain NCTC10783 exemplifies the characteristics of a resilient and functionally important microbe within its ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 NZ_LR134300.1 Bac0017496 Shewanella putrefaciens strain NCTC12093 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens 24 NZ_LR134303.1 Bac0017497 Staphylococcus schweitzeri strain NCTC13712 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus schweitzeri 1654388 NZ_LR134304.1 Bac0017498 Streptococcus milleri strain NCTC10708 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus milleri 33040 NZ_LR134307.1 Bac0017499 Stutzerimonas stutzeri strain NCTC10450 "Stutzerimonas stutzeri strain NCTC10450 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds rather than through photosynthesis or chemosynthesis. Stutzerimonas stutzeri is an aerobe, requiring oxygen for its metabolic processes, which aligns with its habitat characterized as host-associated.↵↵The presence of S. stutzeri in host-associated environments suggests potential roles in the microbiomes of various organisms, where it may participate in nutrient cycling or interact with other microbial communities. While specific ecological interactions and functional roles of strain NCTC10450 within its host environment are not detailed, its metabolic capabilities as a heterotroph and aerobic organism may allow it to adapt to specific niches within host-associated ecosystems. Understanding the precise interactions and contributions of S. stutzeri strain NCTC10450 could provide insights into its potential impact on host health and microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 NZ_LR134319.1 Bac0017500 Lacticaseibacillus rhamnosus strain NCTC13710 "Lacticaseibacillus rhamnosus strain NCTC13710 is a Gram-positive, rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and exhibits facultative anaerobic metabolic capabilities. This strain is part of a diverse group of lactic acid bacteria, which are commonly found in various habitats, including fermented foods and the gastrointestinal tracts of humans and animals. The facultative anaerobic nature of L. rhamnosus NCTC13710 enables it to adapt to fluctuating oxygen levels, allowing it to survive and proliferate in both aerobic and anaerobic environments.↵↵Lacticaseibacillus rhamnosus is recognized for its potential probiotic properties, contributing to gut health and influencing host microbiota composition. The ability of this strain to inhabit multiple ecological niches underscores its versatility and adaptability, which may play a role in its applications in food fermentation and health. Future research could further elucidate the specific mechanisms by which L. rhamnosus NCTC13710 interacts with its environment and host, potentially revealing insights into its functional contributions to microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus rhamnosus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic Multiple Free living 47715 NZ_LR134322.1 Bac0017501 Lactobacillus paragasseri strain NCTC13720 "Lactobacillus paragasseri strain NCTC13720 is a rod-shaped bacterium belonging to the genus Lactobacillus, recognized for its role in various fermentation processes. This strain is part of the lactic acid bacteria group, which is critical in the production of fermented foods and beverages. Lactobacillus species are well-known for their ability to produce lactic acid from carbohydrates, which contributes to their preservation qualities and potential health benefits. ↵↵Lactobacillus paragasseri, like other members of its genus, is associated with a range of applications in food technology, particularly in dairy product fermentation. Its rod shape is characteristic of many Lactobacillus species, which typically exhibit a bacillary morphology. This shape may influence its metabolic capabilities and interactions within microbial communities during fermentation.↵↵The ecological role of Lactobacillus paragasseri strain NCTC13720 may extend beyond food production, as members of the Lactobacillus genus are often found in diverse environments, including the gastrointestinal tracts of humans and animals. Here, they can contribute to gut health by promoting a balanced microbiome and potentially competing with pathogenic microorganisms. Further studies could elucidate the specific interactions and benefits that strain NCTC13720 may provide in its native or applied environments, enhancing our understanding of its functional significance in microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus paragasseri Rod 2107999 NZ_LR134325.1 Bac0017502 Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906 "Aggregatibacter aphrophilus ATCC 33389 strain NCTC 5906 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic growth, enabling it to thrive in various oxygen environments. This strain is host-associated, indicating its presence in specific biological systems, which may involve interactions with host organisms. ↵↵The facultative anaerobic nature of Aggregatibacter aphrophilus allows it to adapt to fluctuating oxygen levels, contributing to its survival in diverse habitats, particularly those associated with animal hosts. This adaptability is significant, as it enables the organism to exploit niches where oxygen availability may vary, potentially influencing its metabolic pathways and ecological interactions.↵↵Understanding the ecological role of Aggregatibacter aphrophilus, particularly in relation to its host-associated habitat, may provide insights into its contributions to microbial communities, host health, and the dynamics of microbial interactions. Future studies could elucidate the specific mechanisms by which this bacterium interacts with its host, further highlighting its biological significance within host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter aphrophilus Negative Rod No 1 2 Facultative Mesophilic HostAssociated Free living 985008 NZ_LR134327.1 Bac0017503 Brevibacillus brevis strain NCTC2611 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus brevis 1393 NZ_LR134338.1 Bac0017504 Mycobacteroides chelonae strain NCTC946 "Mycobacteroides chelonae strain NCTC946 is a nonsporulating, rod-shaped bacterium commonly found in diverse environments, including biofilms, dust, healthcare settings, soil, and water. This organism has garnered attention due to its prevalence in both natural and artificial ecosystems, suggesting its adaptability and potential resilience in various habitats.↵↵The presence of M. chelonae in healthcare settings indicates its ability to thrive in environments that may be subject to various antimicrobial treatments, potentially contributing to its persistence in such locations. The bacterium's association with biofilms suggests a capacity for surface adhesion and community formation, which can enhance its survival and resistance to environmental stresses. ↵↵In natural environments such as soil and water, Mycobacteroides chelonae may play a role in nutrient cycling and microbial interactions, although specific ecological functions remain to be elucidated. The diverse habitats in which this strain is found highlight its ecological versatility, indicating that it may have significant implications for both environmental microbiology and public health. Understanding the ecological role of M. chelonae within these environments may provide insights into its interactions with other microorganisms and its impact on ecosystem dynamics." Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides chelonae Rod No 1 biofilms; dust; healthcare settings; soil; water; Water Nonsporulating 1774 NZ_LR134345.1 Bac0017505 Mycolicibacterium flavescens strain NCTC10271 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium flavescens 1776 NZ_LR134353.1 Bac0017506 Mycolicibacterium aurum strain NCTC10437 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium aurum 1791 NZ_LR134356.1 Bac0017507 Actinomyces israelii strain NCTC12972 "Actinomyces israelii strain NCTC12972 is a Gram-positive, rod-shaped bacterium that thrives in anaerobic environments. This microbe exhibits a characteristic filamentous growth pattern, typical of the Actinomyces genus, which may contribute to its ability to form complex communities in various ecological niches. The anaerobic requirement suggests that A. israelii strain NCTC12972 is adapted to environments with limited oxygen availability, potentially influencing its interactions with other microorganisms and its role within the microbiome of host organisms.↵↵The filamentous morphology of A. israelii strains is often associated with the production of exopolysaccharides, which can enhance biofilm formation and provide structural support in anaerobic habitats. As a member of the Actinobacteria phylum, this strain may play a significant role in organic matter decomposition and nutrient cycling in its environment. Furthermore, the anaerobic nature of A. israelii strains may suggest a close association with anaerobic host tissues or environments, where it could interact with other microbial communities.↵↵Overall, the unique combination of its Gram-positive, rod-shaped structure and strict anaerobic requirement indicates that Actinomyces israelii strain NCTC12972 is well-suited for survival in low-oxygen environments, potentially contributing to its ecological success in complex microbial ecosystems." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces israelii positive Rod anaerobic 1659 NZ_LR134357.1 Bac0017508 Campylobacter jejuni subsp. doylei strain NCTC11951 "Campylobacter jejuni subsp. doylei strain NCTC11951 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain thrives as a microaerophile, requiring reduced oxygen levels for optimal growth, which is a distinctive trait among many Campylobacter species. It is a heterotrophic organism, relying on organic compounds for energy, and exhibits versatility in its habitat, as it can be found in multiple environmental settings.↵↵Although specific temperature preferences for strain NCTC11951 are not detailed, Campylobacter species generally prefer mesophilic conditions. The presence of this strain in various habitats suggests an ability to adapt to different environments, which may include both terrestrial and aquatic ecosystems. This adaptability is indicative of its survival strategies in fluctuating ecological niches.↵↵Overall, the unique combination of traits exhibited by C. jejuni subsp. doylei strain NCTC11951 highlights its ecological versatility and potential role in various microbiological and environmental contexts. Further research could provide insights into its interactions within microbial communities and its responses to environmental changes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 32021 NZ_LR134359.1 Bac0017509 Achromobacter insolitus strain NCTC13520 "Achromobacter insolitus strain NCTC13520 is a Gram-negative, aerobic bacterium characterized by its spherical morphology. As a member of the Achromobacter genus, this strain exhibits typical traits associated with aerobic metabolism, relying on oxygen for growth and survival. The Gram-negative classification indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a distinctive feature of its cellular structure.↵↵Strain NCTC13520's aerobic nature suggests that it may thrive in environments rich in oxygen, potentially playing a role in the decomposition of organic material in various ecological niches. The spherical shape of this microbe may influence its interactions within microbial communities, affecting factors such as nutrient uptake and competition with other microorganisms.↵↵The unique combination of its Gram-negative cell wall structure and aerobic lifestyle may position Achromobacter insolitus strain NCTC13520 as a significant player in biogeochemical cycles, particularly in environments where oxygen is readily available. Further studies could elucidate its specific ecological roles and interactions within various habitats, contributing to the broader understanding of microbial ecology and the functions of aerobic bacteria in ecosystem dynamics." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter insolitus Gram-negative sphere aerobic 217204 NZ_LR134361.1 Bac0017510 [Pasteurella] aerogenes strain NCTC13378 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae [Pasteurella] aerogenes 749 NZ_LR134362.1 Bac0017511 [Haemophilus] ducreyi strain NCTC11483 "[Haemophilus] ducreyi strain NCTC11483 is a Gram-negative bacterium recognized for its significance in clinical microbiology. This strain belongs to the genus Haemophilus, which encompasses a variety of species, some of which are notable for their roles in human disease. The Gram-negative classification indicates that this microbe possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this bacterial group. ↵↵Strain NCTC11483 has been subjected to various laboratory analyses, contributing to its recognition as a reference strain within the context of research on [H. ducreyi]. The organism is typically isolated from human clinical specimens, underscoring its relevance in studies related to infectious diseases. Its cellular structure can influence its interactions with the host immune system and impact its susceptibility to antimicrobial agents.↵↵Further investigation into [H. ducreyi] NCTC11483 may provide insights into its metabolic pathways and the specific environmental conditions conducive to its growth. Understanding these traits can help elucidate the ecological niche this strain occupies, particularly in relation to human health. Given the bacterium's association with localized skin infections, further research could yield valuable information regarding its transmission dynamics and potential reservoirs in human populations, thereby enhancing our knowledge of its role in microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus [Haemophilus] ducreyi negative 730 NZ_LR134364.1 Bac0017512 Aeromonas encheleia strain NCTC12917 "Aeromonas encheleia strain NCTC12917 is a Gram-negative, rod-shaped bacterium characterized as an organotrophic and chemotrophic microorganism. This strain, belonging to the genus Aeromonas, demonstrates the ability to utilize organic compounds for energy, an adaptation that is significant in various environments where organic substrates are available.↵↵With its rod-shaped morphology, A. encheleia strain NCTC12917 is well-suited to diverse aquatic habitats, where it may play a role in the decomposition of organic matter. The Gram-negative cell wall structure of this bacterium, which consists of a thin peptidoglycan layer surrounded by an outer membrane, is a feature common among many aquatic bacteria, providing resilience in fluctuating environmental conditions.↵↵The chemotrophic nature of A. encheleia strain NCTC12917 implies that it can derive energy from chemical compounds, potentially allowing it to thrive in nutrient-rich environments such as sediments or water columns with varying organic concentrations. This metabolic versatility may also contribute to its ecological interactions, possibly facilitating nutrient cycling in aquatic ecosystems.↵↵Overall, A. encheleia strain NCTC12917 exemplifies the adaptability of microorganisms in diverse ecological niches, highlighting its potential importance in organic matter degradation and nutrient dynamics within aquatic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas encheleia Gram-negative rod organotroph; chemotroph 73010 NZ_LR134376.1 Bac0017513 Bordetella hinzii strain NCTC13199 "Bordetella hinzii strain NCTC13199 is a Gram-negative, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. This strain, belonging to the genus Bordetella, exhibits distinct morphological and physiological traits typical of this group. As an aerobic organism, B. hinzii requires oxygen for its metabolic processes, which is a critical factor for its growth and survival in various ecological niches.↵↵The strain NCTC13199 has been isolated from specific environmental contexts, although detailed information regarding its ecological habitat and role within microbial communities remains limited. The Gram-negative nature of B. hinzii indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a critical feature influencing its interaction with the surrounding environment, including its susceptibility to antibiotics and its immune evasion strategies.↵↵Given its aerobic requirement, B. hinzii likely occupies niches where oxygen availability is high, potentially including soil, water, or host-associated environments. This adaptation may confer competitive advantages in environments rich in organic matter, where aerobic respiration is advantageous for energy production. Further studies are necessary to elucidate the ecological roles and interactions of Bordetella hinzii strain NCTC13199 within its environment, which may contribute to understanding the dynamics of microbial communities and their functions in various ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella hinzii Negative Aerobe 103855 NZ_LR134382.1 Bac0017514 Haemophilus aegyptius strain NCTC8134 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus aegyptius microaerophile nasal discharge 197575 NZ_LR134395.1 Bac0017515 Corynebacterium segmentosum strain NCTC934 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium segmentosum 43990 NZ_LR134408.1 Bac0017516 Actinomyces viscosus strain NCTC10951 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces viscosus microaerophile 1656 NZ_LR134477.1 Bac0017517 Kocuria rosea strain NCTC7512 "Kocuria rosea strain NCTC7512 is a Gram-positive coccus that typically forms pairs and is found in diverse environments, including indoor dust and the unique ecological setting of the Iranian Ab-e-Siah hot springs. This microorganism is well-adapted to both terrestrial and extreme environments, indicating its versatility in survival and proliferation. The presence of Kocuria rosea in indoor dust highlights its potential role in indoor microbiomes, which may influence human health and indoor air quality. Additionally, its occurrence in hot springs suggests an ability to withstand varying temperatures and possibly extreme conditions, reflecting its resilience as a microbial strain. Understanding the distribution of Kocuria rosea can provide insights into its ecological roles, including potential involvement in biogeochemical cycles in both natural and anthropogenic environments." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rosea positive Coccus dust; indoor dust; Iranian Ab-e-Siah hot springs; Iranian hot spring; skin Pairs 1275 NZ_LR134487.1 Bac0017518 Pasteurella multocida strain NCTC8282 "Pasteurella multocida strain NCTC8282 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and has an optimal growth temperature of 37.0 °C. This strain is host-associated, indicating a relationship with a specific host organism, which influences its ecological niche and potential interactions within the host environment. ↵↵As a member of the Pasteurellaceae family, P. multocida is often associated with various animal species, where it can reside in the respiratory tract and other tissues. The facultative anaerobic nature of this strain allows it to thrive in both aerobic and anaerobic conditions, potentially contributing to its adaptability in diverse environments encountered within host organisms.↵↵The optimal growth temperature of 37.0 °C aligns with the body temperature of warm-blooded hosts, suggesting a specialized adaptation for survival and proliferation in such environments. This trait may facilitate its persistence within the host and influence its interactions with the host's immune system.↵↵Understanding the specific habitat and metabolic capabilities of P. multocida strain NCTC8282 provides insights into its ecological roles, including its potential impact on host health and the dynamics of microbial communities associated with animal hosts. Additionally, its ability to thrive in a host-associated environment underscores the importance of studying such microbes to better comprehend host-microbe interactions and microbial ecology in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 747 NZ_LR134488.1 Bac0017519 Capnocytophaga sputigena strain NCTC11097 "Capnocytophaga sputigena strain NCTC11097 is a Gram-negative, anaerobic bacterium primarily found in the submucosal sulcus of the oral cavity. This organism is noted for its role in the complex microbial communities associated with dental plaque and periodontal tissues. As a member of the genus Capnocytophaga, it exhibits unique morphological characteristics, often displaying a filamentous or rod-like shape.↵↵The anaerobic nature of C. sputigena indicates its adaptation to environments with low oxygen availability, such as the submucosal regions of the oral cavity. This habitat suggests that it may interact with other oral microbiota, contributing to the dynamic balance of microbial communities in the mouth. The presence of C. sputigena in this niche highlights its potential role in oral health and disease, although specific interactions and functions within the microbial community require further investigation.↵↵Interestingly, the association of C. sputigena with the submucosal sulcus may provide insights into its adaptive mechanisms for survival in anaerobic environments, potentially influencing its metabolic pathways and interactions with host tissues. Understanding these traits could enhance our knowledge of oral microbiome dynamics and the ecological roles of anaerobic bacteria in maintaining oral health or contributing to oral disease processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga sputigena negative anaerobic submucosal sulcus 1019 NZ_LR134489.1 Bac0017520 Haemophilus influenzae strain NCTC11873 "Haemophilus influenzae strain NCTC11873 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultatively anaerobic growth capabilities. This strain thrives optimally at a temperature of 35.0°C, which aligns with the physiological conditions typically found in its host-associated habitats. ↵↵As a member of the genus Haemophilus, this bacterium is adapted to living in association with host organisms, where it may occupy niches that provide necessary nutrients and environmental stability. The host-associated nature of H. influenzae suggests a potential role in host microbiota dynamics, where it may contribute to microbial community structure and function. ↵↵The ability to grow under varying oxygen conditions indicates a metabolic versatility that may allow H. influenzae strain NCTC11873 to adapt to different environmental contexts within the host, potentially influencing its interactions with other microbial species and the host immune system. Understanding the specific ecological niches and interactions of this strain could provide insights into its role in host health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 727 NZ_LR134490.1 Bac0017521 Streptococcus mutans strain NCTC10920 "Streptococcus mutans strain NCTC10920 is a Gram-positive coccus that typically occurs in chains or pairs. This facultative anaerobe thrives optimally at a temperature of 37.0°C, which corresponds with the average human body temperature, suggesting its adaptation to a host-associated habitat. S. mutans is a significant member of the oral microbiota, where it plays a pivotal role in dental ecology, particularly in the formation of dental caries. ↵↵The strain's ability to grow in both aerobic and anaerobic conditions allows it to colonize diverse environments within the oral cavity, where fluctuations in oxygen levels can occur due to various physiological processes, such as respiration and dietary intake. As S. mutans metabolizes sugars, it produces organic acids that contribute to tooth enamel demineralization, highlighting its ecological role in oral health and disease dynamics.↵↵Understanding the traits of S. mutans strain NCTC10920 provides insights into its ecological niche and its interactions within the oral microbiome. The strain's specific adaptations underscore its significance in an environment characterized by competing microbial populations and varying nutritional availability, illustrating the complex interplay between host health and microbial activity in the oral cavity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1309 NZ_LR134491.1 Bac0017522 Serratia fonticola strain NCTC13193 "Serratia fonticola strain NCTC13193 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and functions as a chemoheterotroph. This strain does not form spores, which is a characteristic feature of its genus. Serratia fonticola has been isolated from multiple habitats, suggesting a versatile ecological adaptability. The ability to thrive in diverse environments underscores its potential role in various biogeochemical cycles, where it may contribute to organic matter decomposition and nutrient cycling. ↵↵Given its metabolic capabilities, Serratia fonticola strain NCTC13193 could participate in interactions with other microorganisms within its habitat, influencing microbial community dynamics. The strain's facultative anaerobic nature allows it to adapt to fluctuating oxygen levels, potentially providing it with a competitive advantage in environments where oxygen availability varies. This adaptability may also facilitate its survival in transitional zones between aerobic and anaerobic conditions, making it a noteworthy subject for further ecological and microbiological studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia fonticola Negative Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 47917 NZ_LR134492.1 Bac0017523 Serratia rubidaea strain NCTC10036 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia rubidaea 61652 NZ_LR134493.1 Bac0017524 Mannheimia haemolytica strain NCTC10643 "Mannheimia haemolytica strain NCTC10643 is a Gram-negative, rod-shaped bacterium that exhibits microaerophilic growth characteristics. This organism thrives in environments with reduced oxygen levels, which is typical for many members of the Pasteurellaceae family. The microaerophilic nature of M. haemolytica suggests a specialized adaptation to certain ecological niches, possibly including the respiratory tracts of its hosts.↵↵The morphological characteristics of M. haemolytica, specifically its rod shape, may contribute to its ability to colonize and persist in specific environments, enhancing its metabolic efficiency under low-oxygen conditions. The Gram-negative cell wall structure provides this strain with a unique set of features, including a thinner peptidoglycan layer surrounded by an outer membrane that can influence interactions with the host immune system and environmental factors.↵↵Given its microaerophilic requirements, M. haemolytica strain NCTC10643 may play a significant role in the microbial communities of the respiratory systems of various animals, where it could be involved in complex interactions with other microorganisms and host tissues. Understanding the ecology of this strain could shed light on its potential roles in both health and disease within its natural habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia haemolytica negative Rod microaerophile 75985 NZ_LR134495.1 Bac0017525 Corynebacterium matruchotii strain NCTC10206 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium matruchotii anaerobic oral cavity; submucosal sulcus 43768 NZ_LR134504.1 Bac0017526 Capnocytophaga canimorsus strain NCTC11921 "Capnocytophaga canimorsus strain NCTC11921 is a Gram-negative, nonsporulating rod that exhibits a microaerophilic oxygen requirement and thrives optimally at 37.0°C. As a chemoheterotroph, this strain utilizes organic compounds as both its energy and carbon sources, reflecting its adaptation to diverse habitats. ↵↵The rod-shaped morphology of C. canimorsus is characteristic of the genus, which is known for its unique metabolic capabilities and ecological versatility. The microaerophilic nature of this strain suggests that it may inhabit environments with limited oxygen availability, such as within the oral cavities of mammals, including dogs, and potentially in other niches where organic matter is present.↵↵Given its diverse habitat preferences and nutritional versatility, C. canimorsus strain NCTC11921 may play a significant role in the microbial communities of host organisms, contributing to the complex interactions within the microbiome. This trait highlights the potential for this bacterium to impact host health and the dynamics of microbial ecosystems, warranting further investigation into its ecological functions and contributions to its environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga canimorsus Negative Rod No 1 Microaerophilic 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 28188 NZ_LR134513.1 Bac0017527 Actinobacillus pleuropneumoniae strain NCTC10976 "Actinobacillus pleuropneumoniae strain NCTC10976 is a Gram-negative, rod-shaped bacterium that exhibits a unique arrangement in chains, pairs, or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within its host-associated habitat. As a facultative anaerobe, A. pleuropneumoniae strain NCTC10976 has the ability to grow in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels within the host environment.↵↵The bacterium's rod shape and its flexible growth arrangements may facilitate its colonization and persistence in host tissues, potentially enhancing its survival and proliferation in diverse microenvironments. The preference for an optimal temperature of 37.0°C suggests a close association with warm-blooded hosts, likely contributing to its ecological niche within animal systems. ↵↵Understanding the physiological traits of A. pleuropneumoniae strain NCTC10976 may provide insights into its ecological role and interactions within host organisms, potentially informing strategies for managing infections caused by this microbe in veterinary contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles 715 NZ_LR134515.1 Bac0017528 Helicobacter pylori strain NCTC13345 "Helicobacter pylori strain NCTC13345 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in microaerophilic conditions, requiring a reduced oxygen environment for optimal growth. It exhibits an optimal growth temperature of 37.0°C, which aligns with its habitat as a host-associated organism, commonly found in the gastric mucosa of humans and various animals.↵↵H. pylori is notable for its ability to survive in the acidic environment of the stomach, a trait that is facilitated by its unique morphology and metabolic adaptations. The organism’s spiral shape allows it to penetrate the viscous mucus lining of the stomach, thereby establishing a niche where it can evade the host's immune response and persist in a highly competitive environment. ↵↵The microbe's microaerophilic nature suggests a specialized adaptation to its environment, where it can utilize the limited oxygen availability to its advantage. This characteristic, combined with its optimal growth temperature, underscores the importance of H. pylori in understanding gastric microbiota interactions and the potential roles of host-associated microbes in gastrointestinal health and disease. Further research into strain NCTC13345 may provide valuable insights into the ecological dynamics of H. pylori within the human microbiome and its implications for host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_LR134517.1 Bac0017529 Helicobacter cholecystus strain NCTC13205 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cholecystus 45498 NZ_LR134518.1 Bac0017530 Helicobacter pylori strain NCTC12823 "Helicobacter pylori strain NCTC12823 is a Gram-negative, microaerophilic bacterium characterized by its spiral-shaped morphology, typically existing as single cells. This strain exhibits optimal growth at a temperature of 37.0°C, which aligns with its adaptation to the human gastric environment, where it is commonly associated. H. pylori is well-known for colonizing the gastric mucosa, and its microaerophilic nature indicates a requirement for reduced oxygen levels, reflecting its specialized habitat within the host's stomach.↵↵The spiral shape of H. pylori is thought to facilitate motility through the viscous gastric mucus, enhancing its ability to establish and maintain its niche in the acidic environment of the stomach. This adaptation not only aids in colonization but may also influence the bacterium's interactions with the host's immune system. Understanding the traits of H. pylori strain NCTC12823 contributes to a broader comprehension of its ecological role within the human microbiome and underscores the complexity of host-associated microbial communities. The strain's specific adaptations highlight its potential impact on gastric health, suggesting a nuanced relationship between the microbe and its host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 NZ_LR134519.1 Bac0017531 Rothia dentocariosa strain NCTC10918 "Rothia dentocariosa strain NCTC10918 is a Gram-positive, non-sporulating coccus that is classified as an aerobic bacterium, typically found in host-associated environments. Members of the Rothia genus, including this strain, are known for their association with human flora, particularly in the oral cavity, where they contribute to the complex microbial ecosystem.↵↵The coccoid shape of Rothia dentocariosa allows it to thrive in various niches within host environments, where it engages in metabolic processes that may influence local microbiomes. As an aerobe, this strain requires oxygen for growth, which aligns with its habitat in the oxygen-rich environments of the oral cavity and upper respiratory tract. The non-sporulating nature of this bacterium suggests a reliance on stable environmental conditions for survival, as it does not possess the ability to withstand extreme stressors that would typically trigger sporulation in other bacterial species.↵↵The ecological role of Rothia dentocariosa strain NCTC10918 may extend beyond mere commensalism, potentially participating in the modulation of the host immune response or influencing the colonization dynamics of other microbial inhabitants. Further studies could elucidate its specific interactions within the oral microbiome and its potential implications for oral health and disease." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia dentocariosa Positive Cocci No 1 1 Aerobe Mesophilic HostAssociated Free living Nonsporulating 2047 NZ_LR134521.1 Bac0017532 Bartonella vinsonii strain NCTC12905 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella vinsonii 33047 NZ_LR134529.1 Bac0017533 Arachnia propionica strain NCTC11666 "Arachnia propionica strain NCTC11666 is a Gram-positive, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and relies on anaerobic conditions for growth. As a nonsporulating organism, it does not produce spores as a means of survival under adverse environmental conditions. The strain has been isolated from various habitats, indicating its versatility and adaptability to different ecological niches.↵↵The anaerobic nature of A. propionica suggests that it occupies environments depleted of oxygen, which can include various anaerobic habitats such as the gastrointestinal tracts of animals or other organic-rich environments. This metabolic strategy allows the bacterium to thrive in conditions that would be inhospitable to many aerobic microorganisms. ↵↵Understanding the ecological role of A. propionica within its habitats can provide insights into its interactions with other microbial communities and its potential contributions to biogeochemical cycles, particularly those involving organic matter degradation and fermentation processes. Future studies may reveal more about its specific ecological functions and potential applications in biotechnology or environmental microbiology." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Arachnia Arachnia propionica Positive Rod No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 1750 NZ_LR134535.1 Bac0017534 Alteromonas sp. 76-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. 76-1 2358187 NZ_LR136958.1 Bac0017535 Metamycoplasma salivarium strain NCTC10113 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma salivarium submucosal sulcus 2124 NZ_LR214938.2 Bac0017536 Metamycoplasma orale strain NCTC10112 "Metamycoplasma orale strain NCTC10112 is a pleomorphic, Gram-negative bacterium characterized as a nonsporulating, chemoheterotrophic organism with an optimal growth temperature of 37.0°C. This strain’s pleomorphic nature allows it to adopt various shapes, which may contribute to its adaptability in diverse environments. As a chemoheterotroph, Metamycoplasma orale relies on organic compounds for energy, indicating a potential role in nutrient cycling within its habitats.↵↵The organism's ability to thrive at the human body temperature suggests that it may be well-adapted to environments associated with warm-blooded hosts. Although specific ecological roles and interactions are not detailed in the available data, the presence of Metamycoplasma orale in multiple habitats implies a versatile ecological niche. The adaptability of this strain may enable it to occupy various ecological niches, potentially influencing microbial community dynamics in those environments. Further research could elucidate its specific interactions and contributions to microbial ecosystems." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale Negative Pleomorphic No 1 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 2121 NZ_LR214940.1 Bac0017537 Mesomycoplasma neurolyticum strain NCTC10166 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma neurolyticum 2120 NZ_LR214951.1 Bac0017538 Mycoplasmopsis bovigenitalium strain NCTC10122 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovigenitalium 2112 NZ_LR214970.1 Bac0017539 Mycoplasmopsis bovirhinis strain NCTC10118 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovirhinis 29553 NZ_LR214973.1 Bac0017540 Mesomycoplasma conjunctivae strain NCTC10147 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma conjunctivae lung 45361 NZ_LR214997.1 Bac0017541 Mycoplasmopsis canis strain NCTC10146 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis canis 29555 NZ_LR215010.1 Bac0017542 Mycoplasmopsis glycophila strain NCTC10194 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis glycophila 171285 NZ_LR215024.1 Bac0017543 Mesomycoplasma ovipneumoniae strain NCTC10151 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae 29562 NZ_LR215027.1 Bac0017544 Mycoplasmopsis gallopavonis strain NCTC10186 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis gallopavonis 76629 NZ_LR215033.1 Bac0017545 Mycoplasmopsis columboralis strain NCTC10179 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis columboralis 171282 NZ_LR215040.1 Bac0017546 Mycoplasmopsis columbinasalis strain NCTC10184 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis columbinasalis 114880 NZ_LR215043.1 Bac0017547 Mycoplasmopsis arginini strain NCTC10129 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini No 1 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating Animal; Human 2094 NZ_LR215044.1 Bac0017548 Chryseobacterium indologenes strain 3012STDY6981895 "Chryseobacterium indologenes strain 3012STDY6981895 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain belongs to the genus Chryseobacterium, which is known for its diverse metabolic capabilities and adaptation to various environments. The Gram-negative nature of this microbe indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in certain ecological niches. ↵↵As an aerobic organism, Chryseobacterium indologenes strain 3012STDY6981895 requires oxygen for its metabolic processes, suggesting a potential preference for environments where oxygen is readily available. This trait is typical of many bacteria in the Chryseobacterium genus, which are often isolated from soil and aquatic environments, indicating their role in nutrient cycling.↵↵The ecological significance of Chryseobacterium indologenes strain 3012STDY6981895 may extend to its interactions within microbial communities, particularly in its capacity to degrade complex organic materials. The ability to thrive in aerobic conditions allows this strain to participate actively in the decomposition processes in its habitat, potentially influencing soil health and biogeochemical cycles. Thus, it plays a role in maintaining the balance of microbial ecosystems where it is present." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indologenes negative Rod aerobic 253 NZ_LR215967.1 Bac0017549 Streptococcus pneumoniae strain GPSC21 substr. ST10619 "Streptococcus pneumoniae strain GPSC21 substr. ST10619 is a Gram-positive coccus characterized by its tendency to form chains and pairs. This strain thrives optimally at a temperature of 30.0°C, indicating a preference for moderate thermal conditions. As a facultative anaerobe, S. pneumoniae ST10619 can survive and grow in both aerobic and anaerobic environments, which suggests a versatile metabolic capability that allows it to adapt to varying oxygen availability.↵↵The habitat of this strain is noted to be multiple, reflecting its potential adaptability to diverse ecological niches. This ecological flexibility may facilitate its survival and proliferation in various environments, including those within host organisms and in the external environment. Such traits are consistent with the broader adaptability observed in the Streptococcus genus, often allowing these bacteria to occupy different ecological roles.↵↵Understanding the physiological characteristics of S. pneumoniae strain GPSC21 substr. ST10619 can provide insights into its ecological dynamics and interactions within microbial communities, particularly in environments where oxygen levels fluctuate. This adaptability may play a crucial role in its ecological success and underscores the importance of environmental factors in shaping the behavior and distribution of this strain." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 NZ_LR216035.1 Bac0017550 Streptococcus pneumoniae strain GPSC34 substr. ST10697 "Streptococcus pneumoniae strain GPSC34 substr. ST10697 is a Gram-positive coccus characterized by its occurrence in pairs and chains. This strain thrives optimally at a temperature of 30.0°C and exhibits facultative anaerobic respiration, allowing it to utilize both aerobic and anaerobic metabolic pathways depending on environmental conditions. ↵↵S. pneumoniae is known to inhabit diverse environments, suggesting its adaptability to various ecological niches. The ability to form chains and pairs may confer advantages in colonization and biofilm formation, potentially influencing its survival in different habitats. The strain's facultative anaerobic nature further enhances its versatility, enabling it to persist in environments with fluctuating oxygen levels. ↵↵The ecological implications of S. pneumoniae strain GPSC34 substr. ST10697's adaptability may extend to its role in microbial communities, where its metabolic flexibility could influence interactions with other microorganisms and its response to environmental stresses. Understanding these traits could provide insights into its ecological dynamics and potential roles in health and disease contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 NZ_LR216039.1 Bac0017551 Beijerinckiaceae bacterium RH AL1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Beijerinckiaceae Beijerinckiaceae bacterium RH AL1 2572036 NZ_LR590083.2 Bac0017552 Serratia rubidaea strain NCTC12971 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia rubidaea 61652 NZ_LR590463.1 Bac0017553 Yersinia enterocolitica subsp. enterocolitica strain NCTC12982 "Yersinia enterocolitica subsp. enterocolitica strain NCTC12982 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates a facultative anaerobic metabolism. This strain is categorized as a heterotroph, indicating its reliance on organic compounds for energy. The optimal growth temperature for this strain is 28.0°C, suggesting a preference for mesophilic conditions, which may align with its habitat in diverse environments.↵↵The presence of Y. enterocolitica in various habitats underscores its ecological adaptability, allowing it to thrive in multiple niches, including those associated with animal hosts and contaminated food or water sources. Given its facultative anaerobic nature, this strain can survive in both oxygen-rich and oxygen-poor environments, which may enhance its resilience and distribution across varied ecological contexts.↵↵This adaptability not only illustrates its metabolic versatility but also highlights potential implications for its survival and transmission in environments that fluctuate between aerobic and anaerobic conditions. Understanding these traits can provide insights into the ecological dynamics of Yersinia enterocolitica and its interactions with other microorganisms and hosts in its habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia enterocolitica Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 150052 NZ_LR590469.1 Bac0017554 Corynebacterium pseudotuberculosis strain NCTC4656 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudotuberculosis Animal 1719 NZ_LR590478.1 Bac0017555 Streptococcus australis strain NCTC5338 "Streptococcus australis strain NCTC5338 is a Gram-positive, nonsporulating coccus that exhibits a facultative anaerobic metabolism, utilizing a chemoheterotrophic energy source. This strain belongs to the Streptococcus genus, which is characterized by its spherical shape and tendency to form chains or pairs under certain conditions. Streptococcus australis strain NCTC5338 thrives in diverse habitats, indicating its adaptability to various environmental conditions.↵↵As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, allowing it to occupy ecological niches where oxygen availability fluctuates. The ability to utilize various organic substrates as a source of energy positions S. australis strain NCTC5338 as a versatile organism, potentially playing a role in organic matter decomposition within its habitat.↵↵The adaptability of this strain to multiple environments may contribute to its ecological success and persistence in different ecological systems. Further studies could elucidate its specific ecological roles and interactions with other microorganisms, thereby enhancing our understanding of microbial community dynamics in varied habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus australis Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 113107 NZ_LR594040.1 Bac0017556 Streptococcus suis strain NCTC10237 "Streptococcus suis strain NCTC10237 is a Gram-positive coccus that typically arranges itself in chains, pairs, or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to warm-blooded hosts. As a facultative anaerobe, S. suis strain NCTC10237 possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to colonize a variety of habitats.↵↵The habitat of this strain is described as specialized, suggesting a niche adaptation that may limit its distribution to specific ecological contexts. S. suis is known to inhabit the respiratory tracts of pigs, which may imply that this strain's unique adaptations could be closely linked to its evolutionary interactions within host environments.↵↵Understanding the growth conditions and cellular characteristics of S. suis strain NCTC10237 may provide insights into its ecological role and potential interactions with other microbial communities in its specialized habitat. The strain's ability to thrive at human body temperature and its facultative anaerobic nature further suggest its potential for survival and proliferation in host-associated environments, which may contribute to its significance in veterinary and public health contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 NZ_LR594043.1 Bac0017557 Enterococcus faecalis strain NCTC8732 "Enterococcus faecalis strain NCTC8732 is a Gram-positive, nonsporulating cocci that thrives optimally at a temperature of 37.0°C. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. Enterococcus faecalis is a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, allowing it to inhabit a diverse range of environments.↵↵The versatility of E. faecalis strain NCTC8732 is underscored by its ability to occupy multiple habitats, which may include both human and environmental niches. This adaptability suggests that E. faecalis strains are well-equipped to survive and proliferate under varying conditions, which can be characteristic of many enterococci in ecological settings.↵↵The unique combination of traits presented by this strain highlights its potential role in various ecological interactions, particularly in environments where organic matter is abundant. As a member of the Enterococcus genus, strain NCTC8732 may play significant roles in nutrient cycling and may contribute to the microbial diversity of ecosystems where it is found. Understanding the physiological characteristics of this strain can provide insights into its ecological functions and potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 NZ_LR594051.1 Bac0017558 Streptococcus porcinus strain NCTC10924 "Streptococcus porcinus strain NCTC10924 is a Gram-positive bacterium characterized by its distinct chain-like arrangement of cells. This microbe is part of the genus Streptococcus, which is commonly found in various environments, including the gastrointestinal tracts of animals. The Gram-positive nature of S. porcinus indicates a thick peptidoglycan layer in its cell wall, which is typical of this group of bacteria and plays a role in their structural integrity and resistance to certain environmental stresses.↵↵The chain arrangement of S. porcinus suggests a mode of reproduction through binary fission that leads to the formation of long filaments of cells. This arrangement can influence the microbe's interactions within its habitat, potentially affecting its ability to colonize surfaces or engage in microbial community dynamics. ↵↵Understanding the characteristics of Streptococcus porcinus strain NCTC10924, including its cellular morphology and Gram-staining properties, contributes to the broader knowledge of the physiological and ecological roles of streptococci. Future studies could explore its interactions within the microbiome of porcine hosts, where it may play a role in digestion or compete with other microbial species, shedding light on its ecological significance in swine health and microbiota balance." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus porcinus positive Chains 1340 NZ_LR594052.1 Bac0017559 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Planktothrix Planktothrix rubescens 329571 NZ_LR812491.1 Bac0017560 Staphylococcus schleiferi strain NCTC12218 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus schleiferi milk 1295 NZ_LR962863.1 Bac0017561 Bradyrhizobium vignae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium vignae 1549949 NZ_LS398110.1 Bac0017562 Streptococcus equi subsp. zooepidemicus strain NCTC12090 "Streptococcus equi subsp. zooepidemicus strain NCTC12090 is a Gram-positive coccus that typically arranges itself in pairs or chains. This bacterium is nonsporulating and exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. Being host-associated, S. equi subsp. zooepidemicus is commonly found in the respiratory tract of equine hosts but can also be present in other mammalian species.↵↵The strain's ability to grow in varying oxygen conditions may contribute to its adaptability in diverse host environments, potentially allowing it to establish a niche within the host's microbiome. This feature may also facilitate its persistence in different physiological states of the host, reflecting a potential for resilience in fluctuating conditions. The nonsporulating nature of this strain suggests a reliance on its immediate environment for survival rather than developing spores for dormancy, which could indicate a life cycle closely tied to host conditions. Overall, S. equi subsp. zooepidemicus strain NCTC12090 exemplifies a microbe that is well-suited to a host-associated lifestyle, underscoring the intricate relationships that can exist between microbial inhabitants and their hosts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Pairs-Chains Nonsporulating 40041 NZ_LS483328.1 Bac0017563 Streptococcus thermophilus strain NCTC12958 "Streptococcus thermophilus strain NCTC12958 is a Gram-positive, cocci-shaped bacterium that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 45.0°C, indicating a preference for elevated thermal conditions often found in various fermentation processes. As an anaerobe, S. thermophilus strain NCTC12958 does not require oxygen for growth, which aligns with its ecological role in environments where anaerobic conditions prevail.↵↵The habitat of S. thermophilus strain NCTC12958 is diverse, suggesting its adaptability to multiple environments, potentially including dairy products where it plays a crucial role in fermentation. This adaptability may also contribute to its utility in the food industry, particularly in the production of yogurt and cheese, where controlled fermentation processes are essential. The strain's ability to thrive at higher temperatures may further enhance its effectiveness in these applications, facilitating the fermentation process in warmer conditions.↵↵Overall, the physiological traits of Streptococcus thermophilus strain NCTC12958 not only highlight its importance in food microbiology but also suggest that this organism may have significant implications for industrial fermentation practices, particularly in thermophilic fermentation systems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1308 NZ_LS483339.1 Bac0017564 Streptococcus sanguinis strain NCTC11086 "Streptococcus sanguinis strain NCTC11086 is a Gram-positive coccus that typically occurs in chains or pairs and is classified as a facultative anaerobe. This strain does not form spores, indicating a reliance on alternative survival strategies in its environment. As a host-associated microbe, S. sanguinis strain NCTC11086 predominantly resides within the oral cavity of humans, where it plays a significant role in the complex ecosystem of oral microbiota.↵↵The facultative anaerobic nature of this strain allows it to thrive in both aerobic and anaerobic conditions, adapting to the varying oxygen levels present in the oral environment. Its nonsporulating characteristic suggests that it may be sensitive to environmental stresses that sporulating bacteria can withstand, such as desiccation or extreme temperatures. ↵↵S. sanguinis is known to contribute to the formation of dental biofilms, which are essential for maintaining oral health, yet can also be implicated in the pathogenesis of dental caries when imbalanced. Furthermore, the presence of this strain may indicate a symbiotic relationship with other oral microorganisms, contributing to the overall stability and functionality of the oral microbiome. Thus, understanding the dynamics of S. sanguinis strain NCTC11086 within its host-associated habitat could provide insights into microbial interactions and their implications for oral health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 NZ_LS483364.1 Bac0017565 Paucimonas lemoignei strain NCTC10937 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paucimonas Paucimonas lemoignei 29443 NZ_LS483371.1 Bac0017566 Aeromonas caviae strain NCTC12244 "Aeromonas caviae strain NCTC12244 is a Gram-negative bacterium that demonstrates facultative anaerobic metabolism, allowing it to thrive in a variety of oxygen conditions. This strain is commonly found in diverse aquatic environments, including both freshwater and brackish habitats, as well as in compost, hospital settings, and plant material compost piles. Its presence in such varied environments suggests a versatility that enables it to adapt to different ecological niches.↵↵The ability of A. caviae to survive in both aerobic and anaerobic conditions enhances its ecological resilience, making it an important player in nutrient cycling, particularly in compost scenarios where organic matter decomposition occurs. The strain’s habitat associations indicate its potential role in biodegradation processes, contributing to the breakdown of organic materials in compost and aquatic ecosystems. ↵↵Further, the occurrence of A. caviae in hospital environments raises considerations about its interactions with the microbial community and its potential implications for public health, although specific pathogenic traits for this strain have not been defined. Understanding the ecological roles of such bacteria is essential, as they can influence microbial diversity and function in their respective habitats, possibly affecting nutrient availability and ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas caviae Negative Facultative anaerobe aquatic environments; compost; hospital; plant material compost pile 648 NZ_LS483441.1 Bac0017567 Corynebacterium minutissimum strain NCTC10288 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium minutissimum 38301 NZ_LS483460.1 Bac0017568 Serratia plymuthica strain NCTC12961 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia plymuthica 82996 NZ_LS483469.1 Bac0017569 Lederbergia lenta strain NCTC4824 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lederbergia Lederbergia lenta 1467 NZ_LS483476.1 Bac0017570 Klebsiella oxytoca strain NCTC11355 "Klebsiella oxytoca strain NCTC11355 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, making it capable of thriving in both aerobic and anaerobic environments. This strain is nonsporulating and is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. The optimal growth temperature for K. oxytoca NCTC11355 is 37.0 °C, which aligns with the typical human body temperature, suggesting its potential association with warm-blooded hosts.↵↵K. oxytoca, as a member of the Enterobacteriaceae family, is known to inhabit diverse environments, which may include soil, water, and the gastrointestinal tracts of various organisms. This adaptability to multiple habitats underscores its ecological versatility and potential role in different environments. The ability to function in varying oxygen conditions also enhances its survival and proliferation in diverse ecological niches, including those that may be nutrient-rich or oxygen-depleted.↵↵The traits of K. oxytoca strain NCTC11355 not only highlight its physiological versatility but also suggest a potential role in biogeochemical cycling, particularly in environments where organic matter is abundant. This strain's capacity to utilize a range of organic substrates may influence microbial community dynamics and nutrient availability in its natural habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 NZ_LS483483.1 Bac0017571 Serratia rubidaea strain NCTC10848 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia rubidaea 61652 NZ_LS483492.1 Bac0017572 Chlamydia poikilotherma strain S15-834K Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia poikilotherma 1967783 NZ_LS992155.1 Bac0017573 Methanoculleus bourgensis Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus bourgensis 83986 NZ_LT158599.1 Bac0017574 Mycoplasmopsis bovis "Mycoplasmopsis bovis is a Gram-negative, coccoid bacterium that exists primarily in a host-associated environment. Characterized by a single-cell arrangement, this microbe does not undergo sporulation, which is consistent with its adaptation to a host-dependent lifestyle. Mycoplasmopsis bovis is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, a characteristic that aligns with its habitat in association with host organisms.↵↵The optimal growth temperature for Mycoplasmopsis bovis is approximately 37.0°C, reflecting its adaptation to the warm-blooded hosts it inhabits. Additionally, this bacterium is facultatively anaerobic, enabling it to survive in both aerobic and anaerobic environments. This flexibility may enhance its survivability within diverse host tissues, where oxygen levels can vary significantly.↵↵Understanding the traits of Mycoplasmopsis bovis not only sheds light on its physiological capabilities but also raises questions about its role in the host's microbiome. Given its unique characteristics, this bacterium may play a significant part in the complex interactions within host-associated microbial communities. Further investigation into its ecological functions and potential interactions with other microorganisms could provide valuable insights into the dynamics of host-associated microbiomes." Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis Negative Cocci No 1 1 Facultative 37 Chemoheterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 28903 NZ_LT578453.1 Bac0017575 Halomonas sp. HL-93 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. HL-93 1666906 NZ_LT593974.1 Bac0017576 Micromonospora auratinigra strain DSM 44815 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora auratinigra 29 mesophilic 261654 NZ_LT594323.1 Bac0017577 Micromonospora narathiwatensis strain DSM 45248 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora narathiwatensis 299146 NZ_LT594324.1 Bac0017578 Micromonospora krabiensis strain DSM 45344 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora krabiensis 307121 NZ_LT598496.1 Bac0017579 Acinetobacter baumannii strain NCTC7364 "Acinetobacter baumannii strain NCTC7364 is a Gram-negative, rod-shaped bacterium that typically exists as isolated cells. This strain thrives optimally at a temperature of 37.0°C, suggesting a potential adaptation to mammalian hosts or environments that mimic such conditions. As a chemoheterotrophic organism, A. baumannii strain NCTC7364 relies on organic compounds for energy, indicating a versatile metabolic capability that allows it to exploit a variety of nutrient sources in diverse habitats.↵↵The organism is classified as an aerobe, necessitating oxygen for its metabolic processes, which positions it within environments where oxygen is readily available. The ability to thrive in multiple habitats may contribute to its ecological resilience, allowing it to adapt to different niches. This adaptability could be a significant factor in its survival in various environments, including healthcare settings, where it may encounter fluctuating nutrient availability and oxygen levels.↵↵The capacity of A. baumannii strain NCTC7364 to maintain viability under these conditions underscores its ecological versatility and potential role in microbial communities. Its heterotrophic nature suggests a competitive edge in environments rich in organic matter, further illustrating the importance of this strain in understanding microbial dynamics in diverse ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 NZ_LT605059.1 Bac0017580 Micromonospora chokoriensis strain DSM 45160 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora chokoriensis 356851 NZ_LT607409.1 Bac0017581 Micromonospora viridifaciens strain DSM 43909 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora viridifaciens 1881 NZ_LT607411.1 Bac0017582 Micromonospora echinofusca strain DSM 43913 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora echinofusca 47858 NZ_LT607733.1 Bac0017583 Micromonospora siamensis strain DSM 45097 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora siamensis 299152 NZ_LT607751.1 Bac0017584 Vogesella sp. LIG4 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Vogesella Vogesella sp. LIG4 1192162 NZ_LT607802.1 Bac0017585 Variovorax sp. HW608 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. HW608 1034889 NZ_LT607803.1 Bac0017586 Petrimonas mucosa strain ING2-E5A "Petrimonas mucosa strain ING2-E5A is a Gram-negative, rod-shaped bacterium characterized by its ability to thrive at an optimal temperature of 45.0°C and its facultative aerobe/anaerobe metabolic capability. This strain demonstrates versatility in its growth conditions, allowing it to utilize both aerobic and anaerobic metabolic pathways depending on the availability of oxygen. The Gram-negative cell wall structure of P. mucosa strain ING2-E5A is indicative of its potential interactions with various environments and its adaptability to different substrates.↵↵The optimal growth temperature of 45.0°C suggests that this strain may inhabit thermophilic niches, potentially contributing to biogeochemical processes in warmer ecosystems. Its facultative lifestyle may provide it with a competitive advantage in fluctuating environmental conditions, where oxygen levels may vary significantly. Furthermore, this trait allows P. mucosa strain ING2-E5A to exploit a range of organic compounds, possibly playing a role in nutrient cycling within its ecological niche.↵↵Overall, the growth characteristics of P. mucosa strain ING2-E5A highlight its potential ecological relevance, particularly in thermophilic environments where it may contribute to the breakdown of complex organic matter, thereby influencing microbial community dynamics and ecosystem functioning." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Petrimonas Petrimonas mucosa Gram-negative rod facultative aerobe/anaerobe 45 thermophilic 1642646 NZ_LT608328.1 Bac0017587 Methanothermobacter wolfeii Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter wolfeii 145261 NZ_LT608329.1 Bac0017588 Dickeya aquatica strain 174/2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya aquatica 1401087 NZ_LT615367.1 Bac0017589 Nonlabens sp. Hel1_33_55 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens sp. Hel1_33_55 1336802 NZ_LT627735.1 Bac0017590 Microbacterium sp. LKL04 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. LKL04 912630 NZ_LT627736.1 Bac0017591 Flavobacteriaceae bacterium MAR_2010_188 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium MAR_2010_188 1250295 NZ_LT629302.1 Bac0017592 Pseudomonas koreensis strain LMG 21318 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 NZ_LT629687.1 Bac0017593 Terriglobus roseus strain GAS232 Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus 392734 NZ_LT629690.1 Bac0017594 Frankineae bacterium MT45 Bacillati Actinomycetota Actinomycetes Frankiales Frankineae bacterium MT45 1882833 NZ_LT629697.1 Bac0017595 Allokutzneria albata strain DSM 44149 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Allokutzneria Allokutzneria albata aerobic 29 mesophilic spore-forming 211114 NZ_LT629701.1 Bac0017596 Pseudomonas antarctica strain LMG 22709 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas antarctica 219572 NZ_LT629704.1 Bac0017597 Pseudomonas poae strain LMG 21465 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas poae 200451 NZ_LT629706.1 Bac0017598 Nakamurella panacisegetis strain P4-7 Bacillati Actinomycetota Actinomycetes Nakamurellales Nakamurellaceae Nakamurella Nakamurella panacisegetis 1090615 NZ_LT629710.1 Bac0017599 Formosa sp. Hel1_31_208 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Formosa Formosa sp. Hel1_31_208 1798225 NZ_LT629733.1 Bac0017600 Opitutus sp. GAS368 Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368 anaerobic 1882749 NZ_LT629735.1 Bac0017601 Brevibacterium sandarakinum strain DSM 22082 "Brevibacterium sandarakinum strain DSM 22082 is a Gram-positive, non-spore-forming bacterium characterized by its spherical shape. This microbial strain has an optimal growth temperature of 29.0°C, suggesting a preference for moderate environmental conditions that may influence its habitat and metabolic activities. ↵↵As a member of the Brevibacterium genus, which is known for its diverse metabolic capabilities, B. sandarakinum may play a role in various biochemical processes. The absence of sporulation indicates a reliance on other survival strategies in adverse conditions, which is common among bacteria that thrive in stable environments. ↵↵The specific growth temperature and morphological characteristics of B. sandarakinum may position it as a potential contributor to ecological niches that favor moderate temperatures, possibly including soil or aquatic environments. Further exploration of its metabolic pathways could yield insights into its ecological roles, particularly in nutrient cycling or interactions with other microorganisms. Understanding the traits of this strain may also contribute to broader knowledge of the Brevibacterium genus and its applications in biotechnology or industry." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium sandarakinum Gram-positive sphere non-motile 29 mesophilic non-spore-forming 260553 NZ_LT629739.1 Bac0017602 Gramella sp. MAR_2010_147 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Gramella sp. MAR_2010_147 1250205 NZ_LT629741.1 Bac0017603 Halopseudomonas litoralis strain 2SM5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas litoralis 797277 NZ_LT629748.1 Bac0017604 Friedmanniella luteola strain DSM 21741 "Friedmanniella luteola strain DSM 21741 is a spherical, aerobic microorganism that thrives optimally at a temperature of 25.0°C. This strain is notable for its spherical morphology, characteristic of certain bacteria that can exhibit varied physiological responses depending on environmental conditions. As an aerobic organism, F. luteola strain DSM 21741 relies on molecular oxygen for its metabolic processes, which may influence its ecological niche and interactions within its habitat.↵↵The specific growth conditions and morphology suggest that F. luteola strain DSM 21741 may play a role in aerobic processes in its environment, potentially contributing to nutrient cycling or organic matter decomposition. Such traits are indicative of its adaptation to environments where oxygen is readily available, allowing it to efficiently utilize aerobic respiration for energy production.↵↵The optimal growth temperature of 25.0°C places this strain within the mesophilic range, which is common among many environmental microorganisms. This temperature preference may suggest an adaptation to temperate environments, where it could coexist with a variety of other microbial species. The combination of its spherical shape and aerobic lifestyle points to a potentially versatile role in microbial communities, particularly in environments that favor such adaptations, such as soil or freshwater ecosystems. Further studies could elucidate its specific ecological functions and interactions with other microorganisms in its habitat." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Friedmanniella Friedmanniella luteola sphere aerobic 25 mesophilic 546871 NZ_LT629749.1 Bac0017605 Bradyrhizobium canariense strain GAS369 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium canariense 255045 NZ_LT629750.1 Bac0017606 Polaribacter sp. KT25b Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. KT25b 1855336 NZ_LT629752.1 Bac0017607 Actinoplanes derwentensis strain DSM 43941 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes derwentensis 29 mesophilic spore-forming 113562 NZ_LT629758.1 Bac0017608 Paenibacillaceae bacterium GAS479 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillaceae bacterium GAS479 1882832 NZ_LT629764.1 Bac0017609 Corynebacterium timonense strain DSM 45434 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium timonense microaerophile 441500 NZ_LT629765.1 Bac0017610 Brevibacterium siliguriense strain DSM 23676 "Brevibacterium siliguriense strain DSM 23676 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, suggesting a preference for moderate environmental conditions. As a member of the Brevibacterium genus, it may be involved in various biotechnological applications, particularly in the fermentation processes where aerobic conditions are favorable. ↵↵The Gram-positive nature of B. siliguriense indicates a thick peptidoglycan layer in its cell wall, which can influence its resilience in different environments and its interactions with other microorganisms. The absence of sporulation suggests that this strain may rely on vegetative growth and other survival strategies rather than forming spores to withstand adverse conditions.↵↵Understanding the growth conditions and physiological traits of B. siliguriense can provide insights into its potential applications in industry, particularly in the production of flavor compounds or bioproducts. Additionally, the bacterium's adaptation to aerobic environments may indicate its role in nutrient cycling within its ecological niche, contributing to the breakdown of organic matter in aerobic habitats. Such traits underline the importance of exploring microbial diversity for potential biotechnological innovations." Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium siliguriense Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 1136497 NZ_LT629766.1 Bac0017611 Pseudomonas umsongensis strain LMG 21317 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas umsongensis aerobic 198618 NZ_LT629767.1 Bac0017612 Streptomyces sp. 2114.2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2114.2 1881022 NZ_LT629768.1 Bac0017613 Streptomyces sp. TLI_053 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TLI_053 1855352 NZ_LT629775.1 Bac0017614 Paraoerskovia marina strain DSM 22126 "Paraoerskovia marina strain DSM 22126 is a Gram-positive, rod-shaped bacterium that exhibits a versatile metabolic capacity, functioning as both an aerobic and facultative aerobe/anaerobe. Optimal growth occurs at a temperature of 29.0°C, suggesting a preference for moderately warm environments. ↵↵The Gram-positive nature of this strain indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environmental conditions. The dual oxygen requirement suggests that Paraoerskovia marina can thrive in both oxygen-rich and oxygen-poor settings, potentially allowing it to occupy diverse ecological niches.↵↵This adaptability to different oxygen levels, combined with its optimal growth temperature, implies that Paraoerskovia marina may play a significant role in the microbial community of marine environments, where fluctuating oxygen levels can occur due to organic matter decomposition and other biogeochemical processes. Understanding the metabolic versatility of this strain could provide insights into its ecological functions and interactions within marine ecosystems, including its potential contributions to nutrient cycling or organic matter degradation." Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Paraoerskovia Paraoerskovia marina Gram-positive rod non-motile aerobic / facultative aerobe/anaerobe 29 mesophilic 545619 NZ_LT629776.1 Bac0017615 Geopseudomonas guangdongensis strain CCTCC AB 2012022 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Geopseudomonas Geopseudomonas guangdongensis 1245526 NZ_LT629780.1 Bac0017616 Stappia sp. ES.058 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Stappia Stappia sp. ES.058 1881061 NZ_LT629784.1 Bac0017617 Jiangella alkaliphila strain DSM 45079 "Jiangella alkaliphila strain DSM 45079 is a Gram-positive bacterium characterized by its obligate aerobic metabolism and optimal growth at 29.0°C. This strain demonstrates a preference for alkaline environments, which is reflected in its taxonomic classification within the Jiangella genus, known for thriving in such conditions. The Gram-positive nature of Jiangella alkaliphila suggests the presence of a thick peptidoglycan layer in its cell wall, which is a common feature among many beneficial microorganisms.↵↵The strain's aerobic requirement indicates that it relies on oxygen for its metabolic processes, which may influence its ecological niche by restricting it to well-oxygenated environments. As an organism adapted to alkaline conditions, Jiangella alkaliphila may play a significant role in biogeochemical cycles within its habitat, potentially contributing to the maintenance of pH balance in alkaline soils or aquatic systems.↵↵Furthermore, the optimal growth temperature of 29.0°C positions this strain within a range that may coincide with moderate climate zones, suggesting that it could be involved in microbial communities that populate such environments. This distinctive combination of traits highlights its potential utility in biotechnological applications, particularly in processes that benefit from alkaline conditions and aerobic metabolism. Understanding the ecological role of Jiangella alkaliphila could provide insights into microbial interactions in alkaline ecosystems and their contributions to nutrient cycling." Bacillati Actinomycetota Actinomycetes Jiangellales Jiangellaceae Jiangella Jiangella alkaliphila Gram-positive aerobic 29 mesophilic 419479 NZ_LT629791.1 Bac0017618 Schaalia radingae strain DSM 9169 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Schaalia Schaalia radingae microaerophile 131110 NZ_LT629792.1 Bac0017619 Pseudomonas yamanorum strain LMG 27247 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas yamanorum 515393 NZ_LT629793.1 Bac0017620 Polaribacter sp. Hel1_33_78 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. Hel1_33_78 1336804 NZ_LT629794.1 Bac0017621 Pseudomonas sihuiensis strain KCTC 32246 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sihuiensis 1274359 NZ_LT629797.1 Bac0017622 Pseudomonas vancouverensis strain LMG 20222 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas vancouverensis 95300 NZ_LT629803.1 Bac0017623 Arcanobacterium phocae strain DSM 10002 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium phocae microaerophile 131112 NZ_LT629804.1 Bac0017624 Leifsonia sp. 21MFCrub1.1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. 21MFCrub1.1 1798223 NZ_LT629867.1 Bac0017625 Mycolicibacterium rutilum strain DSM 45405 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium rutilum 370526 NZ_LT629971.1 Bac0017626 Akkermansia glycaniphila "Akkermansia glycaniphila is a Gram-negative, ovoid-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 29.0°C. This microbe has garnered interest due to its potential role in the human microbiome, particularly in relation to gut health and metabolism. The anaerobic nature of A. glycaniphila suggests its adaptation to the intestinal environment, where oxygen levels are significantly lower than in other habitats. ↵↵Research indicates that members of the Akkermansia genus, including A. glycaniphila, are involved in the degradation of complex polysaccharides, which may contribute to the overall metabolic functions of the gut microbiota. The ability to utilize glycan substrates could have implications for host health, particularly in the context of dietary fiber consumption and its fermentation in the gastrointestinal tract. ↵↵Moreover, the optimal growth temperature of 29.0°C aligns with the typical temperatures found in the human gut, further emphasizing the ecological niche A. glycaniphila occupies. The understanding of this bacterium's traits could lead to insights into its potential benefits for gut health, particularly in maintaining a balanced microbiome and its possible associations with metabolic processes. Overall, A. glycaniphila exemplifies the intricate relationships between gut bacteria and host physiology, highlighting the importance of microbial diversity in health and disease." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia glycaniphila Gram-negative ovoid non-motile anaerobic 29 mesophilic 1679444 NZ_LT629973.1 Bac0017627 Leifsonia sp. 98AMF Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. 98AMF 1798216 NZ_LT630032.1 Bac0017628 Desulfovibrio piger strain FI11049 "Desulfovibrio piger strain FI11049 is a Gram-negative, spiral-shaped bacterium primarily found in the blood, feces, and intestines of various hosts. This strain is part of a group of sulfate-reducing bacteria that are known for their ability to metabolize sulfate, which can lead to the production of hydrogen sulfide as a byproduct. The presence of D. piger in these diverse habitats suggests its role in various biochemical cycles, particularly in anaerobic environments where sulfate is available.↵↵The spiral morphology of D. piger may facilitate its motility and colonization within the intestinal tract, contributing to its survival in the competitive microbial community of the gut. The strain’s adaptation to both the intestinal milieu and the bloodstream indicates its potential involvement in complex interactions with the host microbiota, as well as its resilience in fluctuating environmental conditions.↵↵Understanding the functional role of Desulfovibrio piger strain FI11049 in these specific habitats may provide insights into its contributions to gastrointestinal health and disease. Its presence in fecal matter also highlights the potential of this strain as a marker for assessing gut microbial diversity and health in various hosts. Further investigation into its metabolic pathways could elucidate its ecological significance, particularly in anaerobic digestion and nutrient cycling processes within the intestines." Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger negative Spiral blood; feces; intestine 901 NZ_LT630450.1 Bac0017629 Bradyrhizobium erythrophlei strain GAS242 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium erythrophlei 1437360 NZ_LT670818.1 Bac0017630 Streptomyces sp. 3214.6 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 3214.6 1882757 NZ_LT670819.1 Bac0017631 Polaribacter sp. KT 15 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. KT 15 1896175 NZ_LT670850.1 Bac0017632 Aeromicrobium choanae strain 9H-4 "Aeromicrobium choanae strain 9H-4 is a Gram-positive, spherical bacterium that thrives under aerobic conditions and exhibits optimal growth at a temperature of 29.0 °C. This strain is characterized by its non-spore-forming nature, which suggests a reliance on vegetative growth for survival and reproduction. The spherical morphology may confer advantages in specific ecological niches, possibly influencing its interactions within microbial communities.↵↵The aerobic requirement of Aeromicrobium choanae strain 9H-4 indicates its adaptation to environments rich in oxygen, which may include soil and water habitats. The optimal growth temperature of 29.0 °C suggests that this microbe may be well-suited for moderate climatic conditions, potentially influencing its distribution in various ecological settings. ↵↵Given these traits, it is plausible that Aeromicrobium choanae strain 9H-4 plays a role in nutrient cycling and interactions with other microbial species in its habitat. Its ability to thrive in aerobic conditions may contribute to the degradation of organic matter, thus facilitating ecosystem health and stability. Further investigation into its metabolic capabilities and interactions could provide deeper insights into its ecological functions and contributions to microbial diversity." Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium choanae Gram-positive sphere non-motile aerobic 29 mesophilic non-spore-forming 1736691 NZ_LT796768.1 Bac0017633 Kosakonia radicincitans strain D4 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia radicincitans 283686 NZ_LT799040.1 Bac0017634 Nitrospira japonica Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira japonica 1325564 NZ_LT828648.1 Bac0017635 Sterolibacterium denitrificans strain Chol Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Sterolibacterium Sterolibacterium denitrificans 157592 NZ_LT837803.1 Bac0017636 Allosphingosinicella indica strain Dd16 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomicrobiaceae Allosphingosinicella Allosphingosinicella indica 941907 NZ_LT840185.1 Bac0017637 Candidatus Pelagibacter sp. HIMB1321 Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Candidatus Pelagibacter Candidatus Pelagibacter sp. HIMB1321 1388755 NZ_LT840186.1 Bac0017638 Xanthomonas fragariae strain PD5205 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas fragariae aerobic 48664 NZ_LT853885.1 Bac0017639 Geobacter sp. DSM 9736 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. DSM 9736 1277350 NZ_LT896716.1 Bac0017640 Megamonas hypermegale strain NCTC10570 "**Megamonas hypermegale strain NCTC10570** is a Gram-negative bacterium that is part of the genus Megamonas. This strain, identified and cataloged as NCTC10570, exhibits characteristic traits typical of its genus, which may include a distinct cellular morphology and metabolic pathways associated with anaerobic environments. As a Gram-negative organism, M. hypermegale possesses a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in terms of resistance to environmental stresses and antibacterial agents.↵↵While specific metabolic capabilities and ecological roles of strain NCTC10570 are not detailed, members of the Megamonas genus are generally known to be involved in the degradation of complex carbohydrates and contribute to anaerobic fermentation processes. This suggests that M. hypermegale could play a role in the breakdown of organic matter in anaerobic environments, potentially influencing the dynamics of microbial communities.↵↵The presence of M. hypermegale in specific environments may indicate its role in nutrient cycling, particularly in anaerobic digesters or within the gastrointestinal tracts of certain hosts, where it could contribute to the overall microbial diversity and functional capacity of these ecosystems. Understanding the traits of Megamonas hypermegale can provide insights into its ecological significance and potential applications in biotechnological processes involving anaerobic fermentation." Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas hypermegale negative 158847 NZ_LT906446.1 Bac0017641 Staphylococcus piscifermentans strain NCTC13836 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus piscifermentans 70258 NZ_LT906447.1 Bac0017642 Staphylococcus muscae strain NCTC13833 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus muscae aerobic 1294 NZ_LT906464.1 Bac0017643 Corynebacterium imitans strain NCTC13015 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium imitans 156978 NZ_LT906467.1 Bac0017644 Mycolicibacter terrae strain NCTC10856 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter terrae environment 1788 NZ_LT906469.1 Bac0017645 Serratia ficaria strain NCTC12148 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia ficaria 61651 NZ_LT906479.1 Bac0017646 Limosilactobacillus fermentum strain IMDO 130101 "Limosilactobacillus fermentum strain IMDO 130101 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. Limosilactobacillus fermentum is known to inhabit diverse habitats, reflecting its adaptability and potential versatility in various ecological niches.↵↵The facultative anaerobic nature of this strain allows it to thrive in fluctuating oxygen conditions, which could be advantageous in environments where oxygen levels are inconsistent. This adaptability may facilitate the bacterium's survival and proliferation across a range of ecosystems, including fermented foods and the gastrointestinal tracts of various hosts.↵↵Overall, the presence of Limosilactobacillus fermentum strain IMDO 130101 in multiple habitats underscores its ecological significance and potential roles in fermentation processes or symbiotic relationships within microbial communities. Its ability to form chains may also influence its interactions with other microorganisms and its functional contributions to the environments it inhabits." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1613 NZ_LT906621.1 Bac0017647 Latilactobacillus sakei strain J112 "Latilactobacillus sakei strain J112 is a Gram-positive, rod-shaped bacterium recognized for its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is part of a diverse group of lactic acid bacteria and is commonly found in multiple habitats, indicative of its ecological versatility. The ability to adapt to various oxygen levels suggests a potential role in different fermentation processes, particularly in food production, where such bacteria are often involved in the fermentation of vegetables and meats.↵↵Latilactobacillus sakei strains, including J112, are known for their contribution to the flavor and preservation of fermented foods, potentially due to the production of lactic acid and other metabolites that can inhibit spoilage organisms. The capacity to inhabit multiple environments may facilitate its application in biotechnological processes, such as the development of probiotics or starter cultures in the food industry.↵↵Moreover, the facultative anaerobic trait of strain J112 not only underscores its metabolic flexibility but could also suggest an adaptive advantage in fluctuating environments, where oxygen availability might vary. This adaptability may enhance its survival and functionality in various fermentation systems, contributing to the overall microbial diversity and stability of the ecosystems it inhabits." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1599 NZ_LT907933.1 Bac0017648 Pseudodesulfovibrio profundus strain 500-1 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio profundus 57320 NZ_LT907977.1 Bac0017649 Streptomyces sp. 2323.1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 2323.1 1938841 NZ_LT907981.1 Bac0017650 Spirosomataceae bacterium TFI 002 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Spirosomataceae bacterium TFI 002 1945892 NZ_LT907983.1 Bac0017651 Candidatus Kuenenia stuttgartiensis Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Kuenenia Candidatus Kuenenia stuttgartensis 174633 NZ_LT934425.1 Bac0017652 Hartmannibacter diazotrophicus strain E19T Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Pleomorphomonadaceae Hartmannibacter Hartmannibacter diazotrophicus 1482074 NZ_LT960614.1 Bac0017653 Latilactobacillus sakei strain J64 "Latilactobacillus sakei strain J64 is a Gram-positive, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This versatility in oxygen requirements suggests a broad ecological adaptability, enabling L. sakei strain J64 to exploit various habitats, which may include fermented foods and environments where lactic acid bacteria are commonly found. ↵↵As a member of the Lactobacillus genus, L. sakei is likely involved in the fermentation processes, contributing to the production of lactic acid and potentially influencing the flavor and preservation of food products. The strain's ability to inhabit diverse environments could also indicate its role in natural microbiomes, where it may interact with other microbial communities, promoting microbial diversity and stability.↵↵Understanding the traits of L. sakei strain J64 enhances our knowledge of its ecological role, particularly in fermentation systems, where such lactic acid bacteria are essential for food preservation and flavor development. This adaptability to varying oxygen conditions highlights its potential utility in biotechnological applications, such as in the development of fermented foods or probiotics, where the modulation of oxygen levels can be crucial for optimizing microbial activity and product outcomes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1599 NZ_LT960782.1 Bac0017654 Methylorubrum extorquens strain TK 0001 "Methylorubrum extorquens strain TK 0001 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain exhibits the metabolic capability of a methylotroph, utilizing methanol and other one-carbon compounds as its primary energy source. M. extorquens strain TK 0001 thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. ↵↵As a facultative aerobe, this microbe can adapt to varying oxygen levels, allowing it to thrive in diverse habitats where oxygen availability may fluctuate. This metabolic flexibility not only enhances its survivability in different ecological niches but also suggests potential roles in biogeochemical cycles, particularly in carbon cycling through the utilization of methanol and other methylated compounds. ↵↵The ability of Methylorubrum extorquens strain TK 0001 to inhabit multiple environments while employing a unique metabolic strategy underscores its ecological significance, particularly in environments rich in organic waste or where methylated substrates are prevalent. This adaptability may also make it a candidate for biotechnological applications, such as bioremediation or biofuel production, where efficient carbon utilization is of paramount importance." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylorubrum Methylorubrum extorquens Negative Rod Yes 1 2 Facultative aerobe 25 Methylotroph Mesophilic Multiple Free living Pairs - Singles 408 NZ_LT962688.1 Bac0017655 Pseudoalteromonas carrageenovora IAM 12662 strain ATCC43555T Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas carrageenovora 1314868 NZ_LT965929.1 Bac0017656 Candidatus Nitrosocaldus cavascurensis strain SCU2 Thermoproteati Nitrososphaerota Nitrososphaeria Candidatus Nitrosocaldales Candidatus Nitrosocaldaceae Candidatus Nitrosocaldus Candidatus Nitrosocaldus cavascurensis 2058097 NZ_LT981265.1 Bac0017657 Carnobacterium divergens strain MFPA43A1505 "Carnobacterium divergens strain MFPA43A1505 is a Gram-positive, nonsporulating bacterium that thrives optimally at 37.0°C. This strain exhibits facultative anaerobic metabolism, allowing it to grow in both the presence and absence of oxygen, which is characteristic of many gut-dwelling microbes. Given its habitat within the gut, C. divergens may play a role in the complex microbial ecosystems found in this environment, where it could contribute to nutrient processing and host health.↵↵The ability to tolerate varying oxygen levels suggests that Carnobacterium divergens strain MFPA43A1505 has adapted to the dynamic conditions of the gastrointestinal tract, which can fluctuate between aerobic and anaerobic states depending on diet and microbial interactions. Its nonsporulating nature indicates that this strain likely relies on vegetative growth for reproduction and survival, further emphasizing its ecological niche in the gut where sporulation may not confer a significant advantage.↵↵A unique aspect of C. divergens strain MFPA43A1505 is its potential involvement in the fermentation processes within the gut microbiome, which can influence the metabolic pathways available to the host and other microbial members. This suggests that it may play a role in maintaining gut health and modulating the gut environment through its metabolic activities. Understanding the specific functions of this strain could provide insights into its contributions to gut microbiota dynamics and overall host well-being." Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Carnobacterium Carnobacterium divergens positive facultative anaerobe 37 mesophilic gut Nonsporulating 2748 NZ_LT984413.1 Bac0017658 Lactococcus piscium strain CMTALT02 "Lactococcus piscium strain CMTALT02 is a Gram-positive, coccoid bacterium that typically arranges itself in chains. This nonsporulating microbe is found in specific habitats, notably in steak tartare and vacuum-packaged meats, suggesting a niche adaptation to environments with reduced oxygen levels and high nutrient availability. ↵↵The presence of Lactococcus piscium in these food products indicates its potential role in food preservation and fermentation processes, highlighting its significance in the food industry. Given its association with meat products, this strain may contribute to the flavor profile and safety of these items during storage. ↵↵Understanding the physiological traits of Lactococcus piscium strain CMTALT02, particularly its nonsporulating nature, can provide insights into its survival strategies in complex food matrices. This strain exemplifies the adaptability of lactic acid bacteria in various food environments, potentially influencing microbial dynamics and quality in meat preservation." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus piscium Positive Cocci No 1 steak tartare; vacuum-packaged meats Chains Nonsporulating 1364 NZ_LT984414.1 Bac0017659 Cupriavidus neocaledonicus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus neocaledonicus 1040979 NZ_LT984806.1 Bac0017660 Pseudomonas syringae strain CFBP 2116 "Pseudomonas syringae strain CFBP 2116 is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells. This strain is classified as a heterotroph, deriving its energy from organic compounds, and is obligately aerobic, requiring oxygen for its metabolic processes. The versatility of Pseudomonas syringae in terms of habitat suggests its ability to thrive in various environments, which may include soil, water, and plant surfaces. ↵↵The ecological implications of this strain are significant, as Pseudomonas syringae is often found in association with plant hosts, potentially influencing plant health and microbial community dynamics. The ability of this bacterium to occupy multiple habitats indicates its adaptability and resilience in diverse ecological niches. Furthermore, its aerobic nature may suggest a role in the degradation of organic materials in oxygen-rich environments, contributing to nutrient cycling. ↵↵Overall, the traits of Pseudomonas syringae strain CFBP 2116 position it as an important player in microbial ecology, particularly in contexts where organic matter decomposition and plant-microbe interactions are crucial." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 NZ_LT985192.1 Bac0017661 Chlamydia serpentis strain H15-1957-10C Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia serpentis 1967782 NZ_LT993738.1 Bac0017662 Acinetobacter pittii strain UKK-0547 "Acinetobacter pittii strain UKK-0547 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37.0 °C, indicating its adaptation to physiological temperatures commonly found in warm-blooded hosts. As a chemoheterotroph, Acinetobacter pittii strain UKK-0547 utilizes organic compounds for energy, reflecting its heterotrophic lifestyle. ↵↵This bacterium is classified as an aerobe, necessitating oxygen for its metabolic processes. Such an oxygen requirement suggests that Acinetobacter pittii strain UKK-0547 may be involved in aerobic environments, potentially contributing to nutrient cycling in diverse habitats. The ability to inhabit multiple environments indicates its ecological versatility, which may include clinical settings, soil, or water systems. ↵↵Given its traits, Acinetobacter pittii strain UKK-0547 likely plays a role in the decomposition of organic matter in aerated environments, contributing to the overall microbial community dynamics. This capability underscores the importance of understanding such bacteria in both ecological studies and potential implications for environmental health." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 NZ_MDIK02000003.1 Bac0017663 Paenibacillus nuruki strain AASFL403 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus nuruki 1886670 NZ_OY725677.1 Bac0017664 Vibrio cholerae strain VcN1 "Vibrio cholerae strain VcN1 is a Gram-negative, rod-shaped bacterium characterized by its arrangement in single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, VcN1 relies on organic compounds for energy, which may be sourced from a variety of ecological niches, as indicated by its presence in multiple habitats.↵↵The optimal growth temperature for Vibrio cholerae strain VcN1 is around 20.0°C, suggesting a preference for cooler environments compared to many mesophilic organisms. This trait may influence its distribution and ecological interactions, particularly in aquatic ecosystems where temperature fluctuations can occur.↵↵Understanding the physiological characteristics of VcN1, such as its Gram-negative nature and flexible oxygen requirements, could provide insights into its ecological roles and potential interactions with other microorganisms in its habitat. Furthermore, the single-cell arrangement may facilitate competitive advantages in nutrient acquisition and adaptation to varying environmental conditions, positioning VcN1 as a notable player in microbial communities where it is found." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 NZ_PDNJ01000100.1 Bac0017665 Bacillus thuringiensis strain m401 "Bacillus thuringiensis strain m401 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its facultative anaerobic metabolism. This strain is associated with specific hosts, indicating a potential symbiotic or parasitic relationship within particular ecological niches. As a sporulating organism, B. thuringiensis m401 can endure adverse environmental conditions by forming resilient spores, which can remain dormant until favorable conditions arise for growth and reproduction.↵↵The facultative anaerobic nature of this strain allows it to thrive in both aerobic and anaerobic environments, suggesting versatility in its habitat preferences and potential adaptation to varying ecological conditions. This trait may enhance its survival in diverse host-associated environments, contributing to its ecological success.↵↵Understanding the specific interactions of B. thuringiensis strain m401 with its host may provide insights into its ecological role and potential applications in biocontrol or biotechnology. Further investigations into the specific hosts and environmental conditions that support this strain could reveal important ecological relationships and inform the use of this bacterium in sustainable agricultural practices." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 NZ_PYAP02000003.1 Bac0017666 Xanthobacter autotrophicus strain DSM 432 "Xanthobacter autotrophicus strain DSM 432 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic heterotroph. This strain is versatile in its energy acquisition, utilizing organic compounds in its environment to sustain its metabolic processes. Its classification as an aerobe indicates that it requires oxygen for optimal growth, aligning with its heterotrophic lifestyle which relies on the assimilation of carbon from organic sources.↵↵The habitat of X. autotrophicus strain DSM 432 is diverse, suggesting a remarkable adaptability to various ecological niches. This adaptability may facilitate its utilization of a range of organic substrates, thereby playing a potential role in biogeochemical cycles within its environments. ↵↵Overall, the unique combination of traits exhibited by Xanthobacter autotrophicus strain DSM 432 highlights its functional versatility and ecological significance, particularly in organic matter decomposition and nutrient cycling in aerobic environments. This strain exemplifies the complex interactions between microbial life and its environment, reflecting the importance of heterotrophic bacteria in maintaining ecosystem health and balance." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Xanthobacter Xanthobacter autotrophicus Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 280 NZ_VAUP01000009 Bac0017667 Nanoarchaeota archaeon Nanobdellati Nanobdellota Nanobdellota archaeon 2026764 NZBI00000000.1 Bac0017668 Pseudobdellovibrionaceae bacterium Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrionaceae bacterium 2026715 NZBW00000000.1 Bac0017669 Pedosphaera sp. Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp. 2024890 NZFL00000000.1 Bac0017670 Algoriphagus sp. Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus sp. 1872435 NZML00000000.1 Bac0017671 Xanthomarina sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Xanthomarina Xanthomarina sp. 1931211 NZNB00000000.1 Bac0017672 Parvibaculum sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Parvibaculaceae Parvibaculum Parvibaculum sp. 2024848 NZNS00000000.1 Bac0017673 Mesonia sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mesonia Mesonia sp. 1960830 NZPG00000000.1 Bac0017674 Paracoccus sp. (in: a-proteobacteria) Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sp. (in: a-proteobacteria) 267 NZPT00000000.1 Bac0017675 Pusillimonas sp. Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pusillimonas Pusillimonas sp. 1979962 NZQZ00000000.1 Bac0017676 Leeuwenhoekiella sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella sp. 1977054 NZRD00000000.1 Bac0017677 Altibacter sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Altibacter Altibacter sp. 2024823 NZTP00000000.1 Bac0017678 Actibacterium sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Actibacterium Actibacterium sp. 1872125 NZUI00000000.1 Bac0017679 Blastopirellula sp. Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Blastopirellula Blastopirellula sp. 2024826 NZVR00000000.1 Bac0017680 Nitratireductor sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor sp. 1872084 NZXW00000000.1 Bac0017681 Formosa sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Formosa Formosa sp. 2018467 NZZM00000000.1 Bac0017682 Acinetobacter puyangensis strain ANC 4466 "Acinetobacter puyangensis strain ANC 4466 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This strain is part of the genus Acinetobacter, which is characterized by its metabolic versatility and ability to adapt to various environmental conditions. The Gram-negative cell wall structure of A. puyangensis is indicative of its outer membrane composition, which may play a role in its interactions with the environment and other microorganisms.↵↵The optimal growth temperature suggests that A. puyangensis may be well-suited for environments that are temperate or slightly warmer, potentially highlighting its ecological niche in soil or water systems that experience moderate temperatures. The aerobic nature of this strain implies a reliance on oxygen for its metabolic processes, which may influence its distribution in oxygen-rich environments.↵↵Overall, the characteristics of Acinetobacter puyangensis strain ANC 4466 reflect its adaptability and potential role in its native habitat, where it may contribute to nutrient cycling and interact with various microbial communities. Understanding these traits can provide insights into the ecological functions of this bacterium and its potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter puyangensis Gram-negative rod non-motile aerobic 29 mesophilic 1096779 OANT00000000.1 Bac0017683 Bacillus oleivorans strain JC228 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus oleivorans aerobic 1448271 OAOP00000000.1 Bac0017684 Rhodococcus sp. OK270 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. OK270 1882814 OBDL00000000.1 Bac0017685 Geodermatophilus sabuli strain DSM 46844 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus sabuli 1564158 OBDO00000000.1 Bac0017686 Pseudomonas sp. LAMO17WK12:I5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LAMO17WK12:I5 1286366 OBDS00000000.1 Bac0017687 Actinoplanes atraurantiacus strain CGMCC 4.6857 "Actinoplanes atraurantiacus strain CGMCC 4.6857 is a Gram-positive, aerobic bacterium that is known for its ability to form spores. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderate thermal conditions typical of many soil-dwelling actinomycetes. The Gram-positive nature of A. atraurantiacus suggests a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria and may confer resilience in various environmental conditions.↵↵The capacity for sporulation is a significant trait, enabling A. atraurantiacus to survive unfavorable conditions, such as nutrient depletion or extreme environmental stressors. This trait is particularly advantageous in ecological niches where resources may be transient or where competition with other microorganisms is intense. ↵↵Given its aerobic requirement, A. atraurantiacus likely plays a role in the degradation of organic matter in oxygen-rich environments, contributing to nutrient cycling within its habitat. The combination of its Gram-positive structure and spore-forming ability suggests that this strain may also interact with other microbial communities, possibly facilitating symbiotic relationships or influencing the dynamics of microbial populations in its ecological niche. Further studies could elucidate the specific roles A. atraurantiacus plays in its environment, particularly in terms of its interactions with other soil microorganisms." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Paractinoplanes Paractinoplanes atraurantiacus Gram-positive aerobic 29 mesophilic spore-forming 1036182 OBDY00000000.1 Bac0017688 Natronoarchaeum philippinense strain DSM 27208 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronoarchaeaceae Natronoarchaeum Natronoarchaeum philippinense 558529 OBEJ00000000.1 Bac0017689 Pseudomonas sp. URIL14HWK12:I9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URIL14HWK12:I9 1261633 OBEM00000000.1 Bac0017690 Hydrogenobacter hydrogenophilus strain DSM 2913 Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Hydrogenobacter Hydrogenobacter hydrogenophilus 35835 OBEN00000000.1 Bac0017691 Pseudomonas lundensis strain MFPA15A1205 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lundensis 86185 OBKZ00000000.1 Bac0017692 Thalassospira xiamenensis strain USBA 78 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira xiamenensis 220697 OBMM00000000.1 Bac0017693 Pseudobutyrivibrio ruminis DSM 9787 "Pseudobutyrivibrio ruminis DSM 9787 is a Gram-positive, non-sporulating bacterium classified as a chemoheterotroph, thriving in anaerobic environments, particularly within the intestinal microflora of animals. This microbe demonstrates an optimal growth temperature of 39.0°C, aligning with the physiological conditions typically found in the host's gastrointestinal tract.↵↵As a member of the gut microbiota, P. ruminis plays a crucial role in the fermentation of complex carbohydrates, contributing to the overall metabolic processes within the animal intestines. Its anaerobic nature indicates that it relies on fermentation pathways to obtain energy, which is essential for maintaining a balanced gut ecosystem. The presence of P. ruminis in the intestinal flora can influence nutrient absorption and the production of short-chain fatty acids, which are vital for host health. ↵↵Understanding the specific functions and interactions of Pseudobutyrivibrio ruminis within the gut microbiota can provide insights into its potential contributions to host metabolism and the implications of microbial dysbiosis in animal health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio ruminis Positive Yes 1 Anaerobe 39 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 1123011 OBMR00000000.1 Bac0017694 Bacteroides sp. AR29 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AR29 93975 OBMS00000000.1 Bac0017695 Lysinibacillus acetophenoni strain JC23 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Ureibacillus Ureibacillus acetophenoni 614649 OBQC00000000.1 Bac0017696 Salinicoccus kekensis strain DSM 23173 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Salinicoccus Salinicoccus kekensis 714307 OBQF00000000.1 Bac0017697 Chromohalobacter canadensis strain USBA 855 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter canadensis 141389 OBQJ00000000.1 Bac0017698 Curtobacterium sp. 314Chir4.1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. 314Chir4.1 1279028 OCMI00000000.1 Bac0017699 Rhizobium sp. AN5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. AN5 1855304 OCMJ00000000.1 Bac0017700 Pseudomonas sp. LAIL14HWK12:I3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LAIL14HWK12:I3 1265483 OCMM00000000.1 Bac0017701 Pseudomonas sp. LAIL14HWK12:I8 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LAIL14HWK12:I8 1265485 OCMN00000000.1 Bac0017702 Nitrosomonas ureae strain Nm42 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas ureae 44577 OCMU00000000.1 Bac0017703 Enterobacteriaceae bacterium JKS000234 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Candidatus Pantoea floridensis 1938870 OCMY00000000.1 Bac0017704 Nitrosovibrio sp. Nv4 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosovibrio Nitrosovibrio sp. Nv4 1945880 OCMZ00000000.1 Bac0017705 Alysiella filiformis DSM 16848 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Alysiella Alysiella filiformis microaerophile 1120981 OCNF00000000.1 Bac0017706 Streptomyces sp. 1222.2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 1222.2 1938833 OCNG00000000.1 Bac0017707 Caenispirillum bisanense strain USBA 140 "Caenispirillum bisanense strain USBA 140 is a Gram-negative, non-spore-forming bacterium characterized by its curved or spiral shape. This strain thrives optimally at a temperature of 37.0°C and exhibits an anaerobic growth requirement, indicating its adaptation to environments devoid of oxygen. ↵↵The morphological characteristics of C. bisanense suggest that it may be well-suited for specific ecological niches where anaerobic conditions prevail, such as in sediments or the gastrointestinal tracts of certain organisms. Given its non-spore-forming nature, this strain likely relies on a stable environment for survival and propagation. ↵↵Understanding C. bisanense's metabolic pathways and ecological interactions could provide insights into its role within anaerobic communities and its potential applications in biotechnology or environmental microbiology. Its optimal growth temperature aligns with the conditions found in warm-blooded hosts, which may hint at its ecological significance in symbiotic or commensal relationships, although further research would be necessary to elucidate these interactions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Novispirillaceae Caenispirillum Caenispirillum bisanense Gram-negative curved/spiral anaerobic 37 mesophilic non-spore-forming 414052 OCNJ00000000.1 Bac0017708 Hoeflea halophila strain KCTC 23107 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Parahoeflea Parahoeflea halophila 714899 OCPC00000000.1 Bac0017709 Fibrobacter sp. UWT3 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWT3 1896225 OCSS00000000.1 Bac0017710 Caballeronia arationis strain OK806 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia arationis 1777142 OCSU00000000.1 Bac0017711 Xanthomonas fuscans subsp. fuscans strain CFBP6992 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 366649 OCYZ00000000.1 Bac0017712 Tenacibaculum sp. TNO020 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum piscium 1458515 OENF00000000.1 Bac0017713 Tenacibaculum dicentrarchi strain TDCHD05 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum dicentrarchi 669041 OESZ00000000.1 Bac0017714 Burkholderia novacaledonica Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Caballeronia Caballeronia novacaledonica 1544861 OGTP00000000.1 Bac0017715 Lactobacillus fuchuensis strain MFPC41A2801 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus fuchuensis anaerobic 164393 OGVC00000000.1 Bac0017716 Leuconostoc mesenteroides subsp. suionicum strain CECT 9216 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc suionicum 1511761 OKQU00000000.1 Bac0017717 Streptomyces sp. MA5143a Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. MA5143a 2083010 OLMK00000000.1 Bac0017718 Propionibacterium sp. JV5 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium ruminifibrarum 1962131 OMOH00000000.1 Bac0017719 Prolinoborus fasciculus strain CIP 103579T Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Prolinoborus Prolinoborus fasciculus 1056810 ONZB00000000.1 Bac0017720 Kushneria sp. EAod3 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Kushneria Kushneria phyllosphaerae aerobic 2100822 ONZI00000000.1 Bac0017721 Ochrobactrum soli strain FI11154 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum soli 2448455 OOFM00000000.1 Bac0017722 Pseudomonas sp. JV551A1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. JV551A1 2078787 OPYM00000000.1 Bac0017723 Pseudomonas sp. JV241A Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. JV241A 2078785 OPYO00000000.1 Bac0017724 Lactobacillus sakei strain CECT 9624 "Lactobacillus sakei strain CECT 9624 is a Gram-positive, rod-shaped bacterium characterized as a facultative anaerobe, capable of thriving in various habitats. This strain is part of the Lactobacillus genus, which is well-known for its role in fermentation and its presence in diverse ecological niches, including food environments and the gastrointestinal tracts of animals.↵↵As a facultative anaerobe, Lactobacillus sakei strain CECT 9624 can utilize both aerobic and anaerobic metabolic pathways, allowing it to adapt to fluctuating oxygen levels in its environment. This flexibility in oxygen requirement is indicative of its survival strategy in diverse habitats, where it can ferment carbohydrates to produce lactic acid, contributing to food preservation and enhancing flavor profiles in fermented products.↵↵The ability of Lactobacillus sakei strain CECT 9624 to inhabit multiple environments suggests its potential utility in biotechnological applications, particularly in food fermentation processes. Its metabolic capabilities could be harnessed to improve the taste and shelf-life of various food products, highlighting its significance in both traditional and modern food science. Furthermore, the strain's resilience in varying conditions may provide insights into the mechanisms of microbial adaptation, thereby enriching our understanding of microbial ecology in food systems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Latilactobacillus Latilactobacillus sakei Positive Rod No 1 1 Facultative anaerobe Mesophilic Multiple Free living 1599 OVTU00000000.1 Bac0017725 Coraliomargarita sp. Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Coraliomargaritaceae Coraliomargarita Coraliomargarita sp. 2024828 PAAN00000000.1 Bac0017726 Micavibrio sp. Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp. 2024841 PAAR00000000.1 Bac0017727 Martelella sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Martelella Martelella sp. 1969699 PACF00000000.1 Bac0017728 Fulvimarina sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Fulvimarina Fulvimarina sp. 1969479 PACL00000000.1 Bac0017729 Trueperaceae bacterium Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Trueperaceae bacterium 2026798 PAMQ00000000.1 Bac0017730 Halobacteriovoraceae bacterium Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovoraceae bacterium 2026745 PAMZ00000000.1 Bac0017731 Cellvibrionaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Cellvibrionaceae bacterium 2026723 PANW00000000.1 Bac0017732 Cobetia sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Cobetia Cobetia sp. 1873876 PAYB00000000.1 Bac0017733 Halomonas sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. denitritation bioreactor; Marine 1486246 PAYD00000000.1 Bac0017734 bacterium isolate SP78 bacterium 1869227 PAZJ00000000.2 Bac0017735 Rhodobiaceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhodobiaceae Rhodobiaceae bacterium 2026785 PAZY00000000.1 Bac0017736 Pelagibacteraceae bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria Candidatus Pelagibacterales Candidatus Pelagibacteraceae Pelagibacteraceae bacterium 2026775 PBDW00000000.1 Bac0017737 Winogradskyella sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella sp. 1883156 PBLD00000000.1 Bac0017738 Stappia sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Stappia Stappia sp. 1870903 PBLF00000000.1 Bac0017739 Puniceicoccaceae bacterium Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Puniceicoccaceae Puniceicoccaceae bacterium 2026784 PBLN00000000.1 Bac0017740 Spongiibacteraceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacteraceae bacterium 2026793 PBNT00000000.1 Bac0017741 Herbaspirillum sp. Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum sp. 1890675 PBPP00000000.1 Bac0017742 Rubrivirga sp. Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. 1885344 PBTV00000000.1 Bac0017743 Variovorax sp. Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. 1871043 PBYB00000000.1 Bac0017744 Nevskiales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiales bacterium 2026766 PCCX00000000.1 Bac0017745 Rhizobium tubonense strain CCBAU 85046 "Rhizobium tubonense strain CCBAU 85046 is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and aerobic metabolism. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for warm environments, which is typical for many soil-dwelling bacteria. ↵↵As a member of the genus Rhizobium, this strain is likely involved in symbiotic relationships with legumes, facilitating nitrogen fixation, which is essential for soil fertility and plant growth. Its aerobic requirement indicates that R. tubonense strain CCBAU 85046 thrives in oxygen-rich environments, which is crucial for its metabolic processes.↵↵The specific adaptations of this strain to its ecological niche may enhance its effectiveness in promoting plant health and soil quality. The optimization of growth conditions, particularly temperature and oxygen levels, could provide insights into its potential applications in sustainable agriculture, particularly in enhancing crop yields through biological nitrogen fixation in leguminous crops. Understanding these traits further may contribute to advancements in microbial inoculant development for agricultural practices." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Arminella Arminella tubonensis Gram-negative rod aerobic 29 mesophilic non-spore-forming 484088 PCDP00000000.1 Bac0017746 Ochrobactrum sp. 27A/999/2015 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum sp. 27A/999/2015 2038110 PCFL00000000.1 Bac0017747 Chryseomicrobium excrementi strain ET03 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Chryseomicrobium Chryseomicrobium excrementi 2041346 PCGR00000000.1 Bac0017748 Bifidobacterium pseudolongum subsp. globosum strain 1747B "Bifidobacterium pseudolongum subsp. globosum strain 1747B is a Gram-positive, nonsporulating rod-shaped bacterium that typically occurs in pairs. This strain is classified as a chemoheterotroph, utilizing organic compounds as its energy source, and is adapted to an anaerobic environment, thriving in the host gut. The optimal growth temperature for this strain is 37.0°C, aligning with the physiological conditions of its mammalian hosts.↵↵As a member of the Bifidobacterium genus, strain 1747B is likely involved in various gut microbiota functions, contributing to the digestive processes and potentially influencing host health. The anaerobic nature of this strain suggests a specialized adaptation to the gut environment, where oxygen levels are typically low, allowing it to maintain a stable presence in this niche.↵↵The pairing arrangement of the cells may facilitate their colonization and persistence in the gut, as such arrangements can enhance intercellular communication and metabolic cooperation among neighboring cells. This characteristic may play a role in the overall dynamics of gut microbiota interactions, potentially influencing the metabolic pathways that support the health of the host. Further investigation into the specific metabolic contributions of Bifidobacterium pseudolongum subsp. globosum strain 1747B could provide insights into its ecological role within the gut microbiome and its relationship with host physiology." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 1690 PCHA00000000.1 Bac0017749 Bifidobacterium pseudolongum subsp. globosum strain 1520B "Bifidobacterium pseudolongum subsp. globosum strain 1520B is a Gram-positive, rod-shaped bacterium that typically arranges itself in pairs and exhibits anaerobic metabolic characteristics. This strain is nonsporulating and thrives optimally at a temperature of 37.0°C, indicating its adaptation to the warm environment of the host gut. As a chemoheterotroph, it derives energy from organic compounds, which aligns with its role in the complex microbial ecosystems found in the gastrointestinal tract.↵↵Bifidobacterium species are generally known for their contributions to gut health, and strain 1520B is likely to participate in symbiotic relationships within its host, potentially aiding in digestion and the maintenance of intestinal homeostasis. The anaerobic nature of this strain suggests that it plays a role in anaerobic fermentation processes within the gut, contributing to the production of short-chain fatty acids, which are beneficial for colonic health and may influence the overall microbiome composition. ↵↵Understanding the specific traits of strain 1520B can provide insights into its ecological niche and functional contributions to gut microbiota, highlighting its potential importance in maintaining host health and influencing metabolic processes within the gastrointestinal environment." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 1690 PCHH00000000.1 Bac0017750 Bifidobacterium asteroides strain 1460B Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium asteroides bee bread; bee pollen; brood; brood comb; digestive tract; fresh honey; hindgut; honey; honey crop 1684 PCHJ00000000.1 Bac0017751 Pseudomonas sp. MYb187 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MYb187 1827299 PCOA00000000.1 Bac0017752 Ochrobactrum vermis strain MYb71 unitig_3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum vermis 1827297 PCOC00000000.1 Bac0017753 Bacillus sp. MYb56 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MYb56 1827287 PCOH00000000.1 Bac0017754 Microbacterium sp. MYb66 MYb66_18 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. MYb66 1848692 PCOV00000000.1 Bac0017755 Microbacterium sp. MYb64 MYb64_43 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. MYb64 1848691 PCOW00000000.1 Bac0017756 Paenibacillus sp. MYb63 MYb63_26 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. MYb63 1848709 PCOX00000000.1 Bac0017757 Microbacterium sp. MYb45 MYb45_26 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. MYb45 1827294 PCPG00000000.1 Bac0017758 Brevundimonas sp. MYb31 MYb31_52 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas sp. MYb31 1848616 PCPM00000000.1 Bac0017759 Arthrobacter sp. MYb214 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. MYb214 1848596 PCPZ00000000.1 Bac0017760 Pseudomonas sp. MYb185 MYb185_30 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MYb185 1848729 PCQD00000000.1 Bac0017761 Pseudomonas cedrina strain MYb184 MYb184_151 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cedrina 651740 PCQE00000000.1 Bac0017762 Pseudomonas lurida strain MYb17 MYb17_36 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lurida 244566 PCQF00000000.1 Bac0017763 Pseudomonas poae strain MYb117 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas poae 200451 PCQL00000000.1 Bac0017764 Pseudomonas sp. MYb115 MYb115_85 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MYb115 1848717 PCQM00000000.1 Bac0017765 Ochrobactrum sp. 715/2009 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum sp. 715/2009 2038106 PCQS00000000.1 Bac0017766 Hydrogenophilales bacterium Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium CG18_big_fil_WC_8_21_14_2_50_58_12 1974036 PCUE00000000.1 Bac0017767 Lysobacterales bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacterales bacterium CG17_big_fil_post_rev_8_21_14_2_50_64_11 1974109 PCUP00000000.1 Bac0017768 Candidatus Omnitrophica bacterium Pseudomonadati Candidatus Omnitrophota Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_64_10 1974750 PCVW00000000.1 Bac0017769 Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_56_8 Pseudomonadati Nitrospinota Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_56_8 1974049 PCWF00000000.1 Bac0017770 Lactobacillus sp. UMNPBX17 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. UMNPBX17 2042030 PCYT00000000.1 Bac0017771 Lactobacillus sp. UMNPBX6 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. UMNPBX6 2042041 PCZD00000000.1 Bac0017772 Lactobacillus sp. UMNPBX3 MOF2W3B1C8S141428_32_80 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. UMNPBX3 2042044 PCZG00000000.1 Bac0017773 Lactobacillus sp. UMNPBX2 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. UMNPBX2 2042045 PCZH00000000.1 Bac0017774 Lactobacillus sp. UMNPBX1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. UMNPBX1 2042046 PCZI00000000.1 Bac0017775 Ligilactobacillus aviarius strain UMNLAv76 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus aviarius 1606 PCZQ00000000.1 Bac0017776 Salmonella enterica subsp. enterica serovar Enteritidis strain BAA "Salmonella enterica subsp. enterica serovar Enteritidis strain BAA is a Gram-negative microbe characterized by a spirilla shape and the ability to form chains or exist as single cells. This strain exhibits a microaerophilic oxygen requirement, thriving in environments with limited oxygen levels, which is consistent with its adaptation to host-associated habitats. As a chemoorganotroph, it derives energy from organic compounds, a trait that supports its survival and proliferation within the complex environments of animal hosts.↵↵Optimal growth occurs at 37.0 °C, aligning with the body temperature of many warm-blooded hosts, thus facilitating its potential for colonization in these organisms. The chain formation observed in this strain may play a role in its overall fitness and interaction with host tissues, potentially influencing its ability to establish infections or evade the host immune response.↵↵Overall, the ecological niche of Salmonella enterica serovar Enteritidis strain BAA appears to be closely linked to its adaptation to microaerophilic conditions and its reliance on organic substrates, indicating a specialized role in the microbiomes of its animal hosts. This adaptation may be pivotal for understanding its interactions and dynamics within host-associated environments, which can inform studies on microbial ecology and pathogen behavior." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles Human 149539 PDBK00000000.1 Bac0017777 Neisseria sp. N95_16 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. N95_16 2024408 PDBT00000000.2 Bac0017778 Collimonas sp. PA-H2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Collimonas Collimonas sp. PA-H2 1881062 PDBX00000000.1 Bac0017779 Burkholderia sp. JKS000303 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. JKS000303 1938747 PDBZ00000000.1 Bac0017780 Bifidobacterium aemilianum strain XV10 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium aemilianum 2493120 PDCG00000000.1 Bac0017781 Bifidobacterium xylocopae strain XV2 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium xylocopae 2493119 PDCH00000000.1 Bac0017782 Bacteroides fragilis strain CM13 "Bacteroides fragilis strain CM13 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobic chemoorganotroph. This organism thrives in host-associated environments, suggesting a symbiotic relationship with its host. Optimal growth conditions for strain CM13 are observed at 37.0°C, which is consistent with the physiological temperature of warm-blooded animals, including humans.↵↵As an anaerobe, Bacteroides fragilis strain CM13 plays a crucial role in the gut microbiome, contributing to the fermentation of complex carbohydrates and the maintenance of gut health. Its ability to metabolize various organic substrates allows it to compete effectively within the microbial community of the gastrointestinal tract.↵↵The ecological significance of Bacteroides fragilis strain CM13 extends beyond its metabolic capabilities; it is involved in various biochemical processes that may influence host metabolism and immune responses. Thus, while this strain resides in an anaerobic niche, its interactions with the host and other microbial inhabitants can have profound implications for gut homeostasis and overall health. Understanding these dynamics is essential for appreciating the complex relationships within the microbiome and their potential effects on host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 PDCT00000000.1 Bac0017783 Bacteroides fragilis strain 12905 "Bacteroides fragilis strain 12905 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives optimally at a temperature of 37.0 °C. As a chemoorganotroph, this strain derives its energy from organic compounds, indicating its reliance on a rich organic environment for growth and metabolism. ↵↵This microbe is classified as an anaerobe, meaning it grows in environments devoid of oxygen, which aligns with its habitat as a host-associated organism. Bacteroides fragilis strains, including 12905, are commonly found in the gastrointestinal tracts of humans and other animals, where they play a crucial role in the digestion of complex carbohydrates and the maintenance of gut homeostasis.↵↵The unique ecological role of Bacteroides fragilis strain 12905 extends beyond simple digestion; it is involved in the modulation of the host's immune response and contributes to the overall microbial diversity within the gut ecosystem. This bacterium exemplifies the intricate relationships between host organisms and their associated microbiota, highlighting its potential significance in both health and disease contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 PDCW00000000.1 Bac0017784 Burkholderia gladioli strain FDAARGOS_390 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia gladioli Yes phyllosphere 28095 PDDY00000000.1 Bac0017785 Paremcibacter congregatus strain ZYL 558 Pseudomonadati Pseudomonadota Alphaproteobacteria Emcibacterales Emcibacteraceae Paremcibacter Paremcibacter congregatus 2043170 PDEM00000000.1 Bac0017786 Longimonas halophila strain KCTC 42399 Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Longimonas Longimonas halophila facultative anaerobe 1469170 PDEP00000000.1 Bac0017787 Longibacter salinarum strain KCTC 52045 "Longibacter salinarum strain KCTC 52045 is a Gram-negative, rod-shaped bacterium that thrives at an optimal temperature of 37.0°C. This strain exhibits facultative aerobe/anaerobe characteristics, allowing it to adapt to varying oxygen conditions in its environment. As a heterotroph, Longibacter salinarum strain KCTC 52045 relies on organic compounds as its energy source, reflecting its metabolic versatility.↵↵The ability to grow in both aerobic and anaerobic environments suggests that this microbe may occupy diverse ecological niches, potentially enabling it to thrive in fluctuating conditions where oxygen availability may vary. This adaptability could be particularly advantageous in environments such as saline habitats or areas influenced by organic matter decomposition, where oxygen levels can shift dramatically.↵↵In summary, Longibacter salinarum strain KCTC 52045 represents a flexible microbial entity capable of utilizing organic substrates for energy while maintaining adaptability to oxygen fluctuations, which may play a significant role in its ecological interactions within saline environments. Further studies could elucidate its specific ecological functions and contributions to microbial communities in such habitats." Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Longibacter Longibacter salinarum Gram-negative rod non-motile facultative aerobe/anaerobe 37 heterotroph mesophilic 1850348 PDEQ00000000.1 Bac0017788 Lysinibacillus fusiformis strain Juneja "Lysinibacillus fusiformis strain Juneja is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, enabling it to survive in diverse environments. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, which it metabolizes for growth and reproduction. ↵↵The ability to form spores is a significant trait, as it allows L. fusiformis strain Juneja to endure adverse conditions and potentially colonize various habitats. The exact ecological niches of this strain remain to be fully characterized; however, its presence in multiple habitats suggests a remarkable adaptability to different environmental conditions. ↵↵The chemoheterotrophic lifestyle of L. fusiformis strain Juneja positions it as a potential player in organic matter decomposition, contributing to nutrient cycling in its environments. This capability may also imply interactions with other microorganisms and plants, possibly influencing microbial community dynamics and soil health. Further research could elucidate its specific ecological roles and contributions to the microbiome of its habitats." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus fusiformis Positive Rod No 1 Chemoheterotroph Multiple Sporulating 28031 PDFK00000000.1 Bac0017789 Vibrio vulnificus strain LSU1657 "Vibrio vulnificus strain LSU1657 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives in aquatic environments, where it exhibits heterotrophic metabolic capabilities, utilizing organic compounds as its energy source. Optimal growth of LSU1657 occurs at a temperature of 20.0°C, indicating a preference for cooler aquatic habitats. As a facultative anaerobe, this strain is capable of surviving in both the presence and absence of oxygen, providing it with a versatile ecological niche within varying aquatic conditions.↵↵The adaptability of Vibrio vulnificus strain LSU1657 to different oxygen levels and its ability to metabolize a range of organic substrates suggest that it plays a significant role in nutrient cycling within its aquatic habitat. This versatility may contribute to its ecological interactions, particularly in environments where organic matter is abundant. Further studies could elucidate its specific roles in microbial communities and its responses to environmental changes, such as temperature fluctuations and oxygen availability, which are critical factors in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 672 PDFZ00000000.1 Bac0017790 Methylobacterium sp. V23 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. V23 2044878 PDHT00000000.1 Bac0017791 Georgenia soli strain DSM 21838 "Georgenia soli strain DSM 21838 is a Gram-positive, aerobic spherical bacterium. This strain exhibits a distinct morphology, characterized by its spherical shape, which is typical of certain genera within the microbial community. As an aerobic organism, Georgenia soli strain DSM 21838 relies on oxygen for its metabolic processes, suggesting a potential adaptation to well-oxygenated environments, such as soil or surface waters.↵↵The Gram-positive nature of this strain indicates the presence of a thick peptidoglycan layer in its cell wall, which can confer advantages in terms of structural integrity and resilience against certain environmental stresses. This trait may facilitate its survival in various ecological niches, where it could play a role in nutrient cycling or as part of the microbiome associated with terrestrial habitats.↵↵The precise ecological role of Georgenia soli strain DSM 21838 remains to be fully elucidated; however, its aerobic metabolism may suggest involvement in the degradation of organic matter, contributing to soil health and fertility. The presence of such bacteria in soil ecosystems highlights their potential significance in maintaining ecological balance and promoting plant growth through various biochemical processes. Further studies could provide insights into its interactions with other soil microorganisms and its contributions to overall soil ecology." Bacillati Actinomycetota Actinomycetes Allobogoriellales Allobogoriellaceae Georgenia Georgenia soli Gram-positive sphere aerobic 638953 PDJI00000000.1 Bac0017792 Vibrio sp. ES.051 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. ES.051 1761909 PDJL00000000.1 Bac0017793 Bacillus sp. YF23 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. YF23 691698 PDJR00000000.1 Bac0017794 Aliarcobacter trophiarum LMG 25534 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter trophiarum 1032241 PDKD00000000.1 Bac0017795 Arcobacter sp. CECT 8986 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. CECT 8986 2044507 PDKG00000000.1 Bac0017796 Candidatus Marinarcus aquaticus strain CECT 8987 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Candidatus Marinarcus Candidatus Marinarcus aquaticus 2044504 PDKN00000000.1 Bac0017797 Halarcobacter anaerophilus strain DSM 24636 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Halarcobacter Halarcobacter anaerophilus 877500 PDKO00000000.1 Bac0017798 Mycobacterium celatum strain NCTC 12882 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium celatum 28045 PDKV00000000.1 Bac0017799 Azospirillum palustre strain B2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum palustre 2044885 PDKW00000000.1 Bac0017800 Pluralibacter gergoviae strain FDAARGOS_386 "Pluralibacter gergoviae strain FDAARGOS_386 is a Gram-negative, rod-shaped bacterium. This strain exhibits the typical morphology associated with members of the family Enterobacteriaceae, characterized by its elongated structure. Gram-negative bacteria like P. gergoviae possess a distinctive cell wall composed of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which can influence various physiological traits and interactions with the environment.↵↵While the specific metabolic capabilities of strain FDAARGOS_386 are not detailed, Gram-negative rods often exhibit diverse metabolic versatility, allowing them to thrive in various environments. This versatility is generally attributed to their ability to utilize a wide range of organic compounds and adapt to different ecological niches, which may include soil, water, or association with plants and animals.↵↵The presence of P. gergoviae in diverse environments may suggest its potential role in nutrient cycling or interactions with other microbial communities. Further research could provide insights into its ecological functions, including its contributions to microbial diversity or its interactions with other organisms in its habitat. Understanding these aspects may elucidate the ecological significance of P. gergoviae in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter Pluralibacter gergoviae negative Rod 61647 PDKY00000000.1 Bac0017801 Pseudomonas jessenii strain GO3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas jessenii 77298 PDLL00000000.1 Bac0017802 Lewinellaceae bacterium SD302 Pseudomonadati Bacteroidota Saprospiria Saprospirales Lewinellaceae Lewinellaceae bacterium SD302 2014804 PDLQ00000000.1 Bac0017803 Prosthecochloris sp. ZM Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. ZM 2283143 PDNX00000000.1 Bac0017804 Massilia psychrophila strain JCM 30813 ZB100112 "Massilia psychrophila strain JCM 30813 ZB100112 is a Gram-negative, rod-shaped bacterium characterized by its ability to form spores and its optimal growth temperature of 16.0°C. This psychrophilic organism thrives in cold environments, suggesting an adaptation to habitats such as polar regions or deep-sea ecosystems where temperatures are consistently low. ↵↵As an aerobic microbe, Massilia psychrophila strain JCM 30813 ZB100112 requires oxygen for its metabolic processes, which may influence its ecological niche by limiting its distribution to oxygen-rich environments. Its spore-forming capability indicates a strategy for survival in adverse conditions, allowing it to endure periods of nutrient scarcity or extreme temperatures. ↵↵The unique combination of traits exhibited by this strain underscores its potential role in biogeochemical cycles within cold habitats, where it may contribute to the degradation of organic matter or the cycling of nutrients in low-temperature ecosystems. Understanding the physiological adaptations of such microorganisms can provide insights into microbial diversity and ecological function in extreme environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia psychrophila Gram-negative rod aerobic 16 psychrotolerant spore-forming 1603353 PDOB00000000.1 Bac0017805 Massilia eurypsychrophila strain JCM 30074 ZB100119 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia eurypsychrophila 1485217 PDOC00000000.1 Bac0017806 Salipaludibacillus neizhouensis strain KCTC 13187 "Salipaludibacillus neizhouensis strain KCTC 13187 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and thrive at an optimal growth temperature of 25.0°C. This strain exhibits typical features of the genus Salipaludibacillus, which includes the capacity for sporulation, a trait that generally provides a survival advantage under adverse environmental conditions. ↵↵The Gram-positive nature of S. neizhouensis indicates a thick peptidoglycan layer in its cell wall, which is a hallmark of this bacterial group that can play a significant role in its resistance to certain antibiotics and environmental stressors. The spore-forming capability suggests that this strain can enter a dormant state, allowing it to withstand extreme conditions such as nutrient deprivation or desiccation.↵↵Given its specific temperature preference, S. neizhouensis may be well-adapted to mesophilic environments, potentially enhancing its survival in temperate ecosystems. The ecological role of this microbe could extend to nutrient cycling in its habitat, particularly in environments where sporulation is advantageous for survival during periods of environmental fluctuation. Understanding the traits and behaviors of S. neizhouensis may offer insights into the adaptive strategies of Gram-positive bacteria in diverse ecological niches." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salipaludibacillus Salipaludibacillus neizhouensis Gram-positive rod non-motile 25 mesophilic spore-forming 885475 PDOE00000000.1 Bac0017807 Alteribacter lacisalsi strain YSP-3 ZB100012 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alteribacter Alteribacter lacisalsi 2045244 PDOF00000000.1 Bac0017808 Halomonas sp. LBP4 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. LBP4 2044917 PDOG00000000.1 Bac0017809 bacterium DOLZORAL124_64_63 bacterium DOLZORAL124_64_63 2044883 PDQT00000000.1 Bac0017810 Candidatus Saccharibacteria bacterium Candidatus Saccharimonadota Candidatus Saccharimonadota bacterium 2026720 PDRS00000000.1 Bac0017811 Dethiosulfovibrio peptidovorans Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio Dethiosulfovibrio peptidovorans 47055 PDTB00000000.1 Bac0017812 Vibrio splendidus strain 1A01 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 PDUR00000000.1 Bac0017813 Tenacibaculum discolor strain 4G03 "Tenacibaculum discolor strain 4G03 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 29.0°C. This strain is part of the Tenacibaculum genus, which is characterized by its unique morphological and physiological traits. The Gram-negative nature of strain 4G03 suggests a complex cell wall structure, typical of bacteria in this category, which may influence its interactions within its environment.↵↵The aerobic requirement indicates that Tenacibaculum discolor strain 4G03 utilizes oxygen for its metabolic processes, which may affect its distribution in aquatic environments where oxygen availability can vary. The optimal growth temperature of 29.0°C suggests a preference for slightly warm conditions, possibly aligning with habitats such as temperate marine environments.↵↵Understanding the growth requirements and characteristics of Tenacibaculum discolor strain 4G03 can provide insights into its potential roles in nutrient cycling and interactions with other microorganisms in its ecosystem. Its adaptation to aerobic conditions and specific temperature preferences highlights its potential significance in marine microbiology, particularly in relation to the dynamics of microbial communities in oceanic waters. Further research may elucidate its ecological functions and contributions to biogeochemical processes in marine systems." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum discolor Gram-negative rod motile aerobic 29 mesophilic 361581 PDUU00000000.1 Bac0017814 Rhodobacteraceae bacterium 4F10 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium 4F10 2045445 PDUV00000000.1 Bac0017815 Staphylococcus aureus strain PN235B0 "Staphylococcus aureus strain PN235B0 is a Gram-positive, cocci-shaped bacterium that typically forms clusters or single cells. This strain, like other members of the Staphylococcus genus, exhibits a facultative anaerobic oxygen requirement, allowing it to thrive in both aerobic and anaerobic environments. Its optimal temperature for growth is notably low at 3.0°C, suggesting that this strain may be adapted to cold environments, potentially influencing its ecological niche within host-associated habitats.↵↵As a member of the Staphylococcus genus, strain PN235B0 is likely to exhibit metabolic versatility, enabling it to utilize a variety of substrates for energy and growth, especially in colder conditions where other bacteria may be less competitive. Given its association with host environments, the strain could play a role in specific ecological interactions within its host, possibly influencing microbial community dynamics or contributing to nutrient cycling in those settings. The unique combination of its growth characteristics and habitat preference underscores the importance of studying such strains, particularly in the context of microbial ecology and potential applications in biotechnology or medicine." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 PDUY00000000.1 Bac0017816 Staphylococcus aureus strain PR041 "Staphylococcus aureus strain PR041 is a Gram-positive coccus characterized by its arrangement in clusters and singles, which is typical of the Staphylococcus genus. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is notably low at 3.0°C, suggesting an adaptation to cooler habitats, which may be indicative of its ability to survive in specific host-associated environments where temperature fluctuations are common.↵↵The strain's habitat is classified as host-associated, implying a potential relationship with a particular host organism, although specific host interactions are not detailed in the provided traits. The cluster formation of S. aureus is significant as it plays a role in its survival and colonization strategies in host tissues. ↵↵Unique ecological insights suggest that Staphylococcus aureus strain PR041 may possess adaptations for cold tolerance, which could allow it to persist in environments that other strains of S. aureus might not tolerate, thereby contributing to its ecological niche and potential interactions within host-associated microbiomes. This adaptability to lower temperatures could have implications for its survivability in various ecological settings, including those influenced by seasonal temperature variations." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 PDVL00000000.1 Bac0017817 Klebsiella pneumoniae strain PN030E4 "Klebsiella pneumoniae strain PN030E4 is a Gram-negative, non-sporulating rod-shaped bacterium that typically arranges itself in chains, pairs, or singles. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, and is known to thrive in host-associated environments, suggesting a close relationship with its biological hosts. Optimal growth for this strain occurs at a temperature of 37.0°C, which corresponds with the average human body temperature, further emphasizing its adaptation to a host-associated habitat.↵↵As a facultative anaerobe, Klebsiella pneumoniae strain PN030E4 has the capability to grow in both the presence and absence of oxygen, allowing it to occupy various niches within host organisms where oxygen levels may fluctuate. This metabolic versatility not only facilitates its survival in diverse environments but also may contribute to its ecological success in various host-associated habitats.↵↵Understanding the traits of Klebsiella pneumoniae strain PN030E4 can provide insights into its potential interactions within the microbiome of its host, as well as its adaptability to varying conditions. This adaptability might play a significant role in its persistence and proliferation in host environments, potentially influencing the dynamics of microbial communities and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 PDVM00000000.1 Bac0017818 Microbacterium esteraromaticum strain MM1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium esteraromaticum 57043 PDVO00000000.2 Bac0017819 Zhengella mangrovi strain X9-2-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Notoacmeibacteraceae Zhengella Zhengella mangrovi 1982044 PDVP00000000.1 Bac0017820 Pseudobutyrivibrio ruminis strain JK626 "Pseudobutyrivibrio ruminis strain JK626 is a Gram-positive, non-sporulating, anaerobic bacterium that plays a role in the intestinal microflora of animals. This strain exhibits a chemoheterotrophic lifestyle, utilizing organic compounds as energy sources to support its metabolic activities. Its optimal growth temperature is approximately 39.0°C, which aligns with the physiological conditions typically found in the warm environments of the host intestinal tract. ↵↵As an anaerobe, Pseudobutyrivibrio ruminis strain JK626 thrives in low-oxygen environments, which is characteristic of the gastrointestinal tract where it likely contributes to the fermentation processes that are crucial for the digestion of complex carbohydrates. Understanding the metabolic capabilities of this strain may provide insights into its role in the gut microbiome, particularly in relation to fiber fermentation and short-chain fatty acid production. ↵↵The presence of Pseudobutyrivibrio ruminis strain JK626 in the intestines suggests its potential influence on the host's nutritional status and overall health, highlighting the importance of such microbes in animal digestive processes. Further exploration of this strain could reveal its contributions to maintaining a balanced gut microbiota and its impact on host metabolism." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Pseudobutyrivibrio Pseudobutyrivibrio ruminis Positive Yes 1 Anaerobe 39 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 46206 PDYF00000000.1 Bac0017821 Agathobacter ruminis strain JK623 "Agathobacter ruminis strain JK623 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and exhibits strict anaerobic growth characteristics. This organism is part of the diverse microbial community found in the gastrointestinal tracts of ruminants, where it likely plays a role in the fermentation of complex carbohydrates. ↵↵The rod shape of A. ruminis strain JK623 may facilitate its movement and colonization within the anaerobic environment of the rumen, where it can interact with various substrates and other microbial populations. Its anaerobic requirement suggests that it is adapted to conditions where oxygen is limited, which is typical of the ruminal environment. ↵↵Given its specific growth conditions and morphological traits, A. ruminis strain JK623 may contribute to the overall metabolic processes that aid in the digestion of fibrous plant materials in ruminants. Understanding the functional role of this microbe in the rumen could provide insights into the complex interactions that enhance nutrient absorption and microbial symbiosis in these animals, potentially influencing agricultural practices related to livestock management and feed efficiency." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter ruminis Gram-negative rod motile anaerobic 37 mesophilic non-spore-forming 1712665 PDYG00000000.1 Bac0017822 Sporosarcina sp. P10 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. P10 2048264 PDYK00000000.1 Bac0017823 Sporosarcina sp. P16b Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. P16b 2048261 PDYO00000000.1 Bac0017824 Sporosarcina sp. P34 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. P34 2048247 PDZC00000000.1 Bac0017825 Sporosarcina sp. P3 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. P3 2048245 PDZE00000000.1 Bac0017826 Janthinobacterium sp. BJB412 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. BJB412 1871178 PDZP00000000.1 Bac0017827 Cyanobacterium aponinum IPPAS B-1201 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Geminocystaceae Cyanobacterium Cyanobacterium aponinum 2047986 PEBC00000000.1 Bac0017828 Mycobacteroides franklinii strain CCUG 63697 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides franklinii 948102 PECC00000000.1 Bac0017829 Ligilactobacillus salivarius strain SGL 03 "Ligilactobacillus salivarius strain SGL 03 is a Gram-positive, nonsporulating rod-shaped bacterium classified within the Lactobacillus genus, known for its facultative anaerobic metabolism. This strain is primarily host-associated, suggesting a symbiotic relationship with its host, which may contribute to the maintenance of gut health and microbial balance.↵↵The facultative anaerobic nature of L. salivarius strain SGL 03 indicates its ability to thrive in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within the host's gastrointestinal tract. This metabolic flexibility may enhance its survival and functional capacity in diverse microenvironments, potentially influencing the overall composition of the host-associated microbiota.↵↵Ligilactobacillus salivarius strains are often studied for their probiotic properties, and strain SGL 03 may possess beneficial effects on gut health, although specific functional traits and health implications remain to be elucidated. The ecological role of this strain could be significant in modulating the host's immune response and inhibiting pathogenic organisms, although further research is necessary to fully understand its interaction dynamics within the host-associated microbial community. Thus, Ligilactobacillus salivarius strain SGL 03 exemplifies the complexity of host-microbe interactions, highlighting the importance of Lactobacillus species in maintaining microbial diversity and gut homeostasis." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 PECX00000000.1 Bac0017830 Sporanaerobium hydrogeniformans strain XHS1971 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sporanaerobium Sporanaerobium hydrogeniformans 3072179 PEDL00000000.1 Bac0017831 Comamonas sp. 26 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. 26 2035201 PEFL00000000.1 Bac0017832 Pseudomonas sp. BRM28 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. BRM28 2045201 PEFV00000000.1 Bac0017833 Pseudomonas prosekii strain A2-NA12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas prosekii 1148509 PEGA00000000.1 Bac0017834 Yersinia bercovieri strain SCPM-O-B-7607 "Yersinia bercovieri strain SCPM-O-B-7607 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. It is classified as a heterotroph, indicating that it derives its energy from organic compounds, which may contribute to its adaptability in various habitats. The optimal growth temperature for this strain is 28.0°C, suggesting a preference for mesophilic conditions.↵↵Yersinia bercovieri strain SCPM-O-B-7607 has been isolated from multiple environments, highlighting its ecological versatility. This adaptability may reflect its capacity to exploit diverse organic matter sources, which can be crucial for survival in fluctuating ecological niches. Understanding the metabolic capabilities and habitat preferences of this strain can offer insights into its role within microbial communities and its potential interactions with other microorganisms in various ecosystems. This adaptability may also suggest a broader ecological significance, particularly in environments where organic matter is abundant and diverse, emphasizing the importance of heterotrophic microbes in nutrient cycling and ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia bercovieri Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 634 PEHN00000000.1 Bac0017835 Yersinia mollaretii strain SCPM-O-B-7598 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia mollaretii 33060 PEHO00000000.1 Bac0017836 Paenibacillus sp. LK1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. LK1 2053014 PEII00000000.1 Bac0017837 Stenotrophomonas indicatrix strain WS40 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas indicatrix 2045451 PEJS00000000.1 Bac0017838 Stenotrophomonas sp. LMG 10879 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. LMG 10879 487706 PEJT00000000.1 Bac0017839 Delftia acidovorans strain B15 "Delftia acidovorans strain B15 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 30.0°C and requires oxygen for its metabolic processes, classifying it as an aerobe. This organism is known to inhabit a variety of environments, which suggests a level of ecological versatility. ↵↵The Gram-negative nature of D. acidovorans B15 indicates the presence of a thinner peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structural feature may confer resilience in diverse habitats, potentially allowing the strain to interact with different microbial communities and environmental conditions.↵↵Given its optimal growth temperature of 30.0°C, D. acidovorans strain B15 may be particularly well-suited to moderate climates or specific niches within larger ecosystems where such temperatures are prevalent. Its aerobic nature implies that it plays a role in processes that require oxygen, which could include the degradation of organic material or participation in biogeochemical cycles.↵↵Collectively, the traits of D. acidovorans strain B15 suggest that it occupies a flexible ecological role, potentially influencing nutrient cycling and microbial dynamics in its habitats. The ability to thrive in varied environments while maintaining aerobic metabolism may also indicate its adaptability to changing ecological conditions, highlighting its potential importance in microbial community interactions." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia acidovorans Negative Rod Yes 1 2 Aerobe 30 Mesophilic Multiple Free living 80866 PEKB00000000.2 Bac0017840 Prevotella intermedia strain KCOM 1653 "Prevotella intermedia strain KCOM 1653 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments. This species is notably found in diverse habitats including the gingival sulci, gut, oral cavity, rumen, and both subgingival and supragingival dental biofilms, as well as in subgingival plaque and the urogenital tract. The presence of Prevotella intermedia in these specific ecological niches suggests its potential role in oral and gastrointestinal microbiomes, where it may contribute to the complex interspecies interactions characteristic of these communities.↵↵As an obligate anaerobe, Prevotella intermedia relies on environments devoid of oxygen to survive and grow, indicating its adaptation to localized niches within the human body where oxygen levels are minimal. The strain's association with dental biofilms highlights its potential involvement in oral health, particularly in relation to periodontal disease, although specific pathogenicity has not been detailed in the available data. Importantly, the diverse habitats of this strain point to its possible significance in both health and disease states, providing a unique perspective on its ecological role in maintaining homeostasis within the microbiota of humans and ruminants alike. Further investigations into its interactions within these environments may elucidate its contributions to microbial community dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 PEKN00000000.1 Bac0017841 Streptomyces sp. JV178 0000773 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. JV178 858632 PEKU00000000.1 Bac0017842 Ferrovibrio sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Ferrovibrio Ferrovibrio sp. 1917215 PEKV00000000.1 Bac0017843 Methylobacterium frigidaeris strain IER25-16 C26183 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium frigidaeris 2038277 PELK00000000.1 Bac0017844 Thermus scotoductus strain 38_S38 "Thermus scotoductus strain 38_S38 is a nonsporulating, rod-shaped bacterium that exhibits facultative anaerobic respiration and is classified as a chemoheterotroph, utilizing organic compounds as its primary energy source. This strain thrives optimally at a temperature of 60.0 °C, indicating a preference for thermophilic environments. ↵↵The habitat of Thermus scotoductus strain 38_S38 spans multiple ecological niches, which may include both natural hot springs and anthropogenic thermal environments. Its ability to survive in diverse habitats suggests a remarkable adaptability to varying conditions, possibly allowing it to play a role in biogeochemical cycles in high-temperature ecosystems. ↵↵The facultative anaerobic nature of this strain implies that it can switch between aerobic respiration and fermentation, depending on the availability of oxygen. This metabolic flexibility may confer a competitive advantage in fluctuating environmental conditions, enabling it to thrive in oxygen-depleted zones as well as in oxygen-rich environments. ↵↵Overall, Thermus scotoductus strain 38_S38 represents an interesting subject for further study in microbial ecology and thermophilic physiology, particularly regarding its adaptability and metabolic versatility in high-temperature habitats." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus Rod No 1 facultative anaerobe 60 Chemoheterotroph Thermophilic Multiple Nonsporulating 37636 PELM00000000.1 Bac0017845 Thermus scotoductus strain 34_S34 "Thermus scotoductus strain 34_S34 is a rod-shaped bacterium characterized by its nonsporulating nature and ability to thrive as a facultative anaerobe. This strain exhibits optimal growth at a temperature of 60.0 °C, indicative of its preference for thermophilic environments. As a chemoheterotroph, Thermus scotoductus strain 34_S34 derives its energy from organic compounds, allowing it to occupy various habitats where organic matter is present.↵↵The versatility of this strain in terms of oxygen utilization suggests that it can adapt to varying environmental conditions, potentially engaging in both aerobic and anaerobic metabolic processes. This adaptability not only underscores its ecological resilience but also points to its potential role in nutrient cycling within its habitats. The ability to flourish in diverse environments may facilitate interactions with other microbial communities, contributing to biogeochemical processes such as decomposition and organic matter turnover.↵↵Overall, Thermus scotoductus strain 34_S34 represents a model organism for studying thermophilic adaptations and metabolic flexibility, which are critical for survival in fluctuating environmental conditions. Its presence in multiple habitats highlights the importance of such microorganisms in maintaining ecosystem dynamics and their potential utility in biotechnological applications." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus Rod No 1 facultative anaerobe 60 Chemoheterotroph Thermophilic Multiple Nonsporulating 37636 PELP00000000.1 Bac0017846 Thermus scotoductus strain 25_S25 "Thermus scotoductus strain 25_S25 is a rod-shaped, nonsporulating bacterium characterized as a facultative anaerobe that thrives optimally at a temperature of 60.0°C. As a chemoheterotroph, this strain is capable of utilizing organic compounds as its primary energy source, reflecting its adaptability to various ecological niches. ↵↵The ability of Thermus scotoductus strain 25_S25 to function as a facultative anaerobe allows it to survive in both oxygen-rich and oxygen-poor environments, indicating a versatile metabolic capacity that can be beneficial in diverse habitats. The strain's preference for elevated temperatures suggests a potential role in thermal environments, such as hot springs or geothermal areas, where it may contribute to biogeochemical processes.↵↵Furthermore, the presence of Thermus scotoductus strain 25_S25 in multiple habitats underscores its ecological flexibility and potential applications in biotechnology, particularly in processes requiring high-temperature stability. This adaptability may also provide insights into microbial survival strategies in fluctuating environmental conditions, highlighting the importance of thermophilic microorganisms in ecosystem dynamics and their potential utility in industrial applications." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus Rod No 1 facultative anaerobe 60 Chemoheterotroph Thermophilic Multiple Nonsporulating 37636 PELY00000000.1 Bac0017847 Thermus scotoductus strain 17_S17 "Thermus scotoductus strain 17_S17 is a rod-shaped, nonsporulating bacterium characterized as a facultative anaerobe that thrives optimally at 60.0°C. This organism is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which it metabolizes in the presence or absence of oxygen. ↵↵The habitat of Thermus scotoductus strain 17_S17 is noted to be diverse, suggesting an adaptability to varying environmental conditions. Its ability to function as a facultative anaerobe allows it to survive in both aerobic and anaerobic environments, possibly broadening its ecological niches in natural and artificial habitats. This versatility in energy metabolism and oxygen tolerance may play a significant role in its survival strategy in fluctuating ecosystems, including thermal environments where temperature variations can occur.↵↵Given these traits, Thermus scotoductus strain 17_S17 may contribute to biogeochemical processes within its habitats, particularly in high-temperature ecosystems, where its metabolic capabilities could influence organic matter decomposition and nutrient cycling." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus Rod No 1 facultative anaerobe 60 Chemoheterotroph Thermophilic Multiple Nonsporulating 37636 PEMG00000000.1 Bac0017848 Thermus scotoductus strain 14_S14 "Thermus scotoductus strain 14_S14 is a rod-shaped, nonsporulating bacterium that exhibits facultative anaerobic respiration and thrives optimally at a temperature of 60.0°C. This strain is categorized as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon sources. ↵↵Thermus scotoductus strain 14_S14 has been isolated from a variety of habitats, suggesting a versatile ecological niche that enhances its survival in diverse environments. Its ability to function as a facultative anaerobe allows it to adapt to varying oxygen levels, enabling it to exploit different ecological settings where oxygen availability may fluctuate.↵↵The biochemical and physiological characteristics of this strain suggest potential applications in biotechnology, particularly in processes that require elevated temperatures. Furthermore, its metabolic flexibility may play a role in biogeochemical cycling in extreme environments, where it could contribute to the degradation of organic matter under both aerobic and anaerobic conditions. Overall, the adaptability and metabolic versatility of Thermus scotoductus strain 14_S14 underscore its significance in microbial ecology and its potential utility in industrial applications." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus Rod No 1 facultative anaerobe 60 Chemoheterotroph Thermophilic Multiple Nonsporulating 37636 PEMJ00000000.1 Bac0017849 Thermus scotoductus strain 10_S10 "Thermus scotoductus strain 10_S10 is a rod-shaped, nonsporulating bacterium that exhibits facultative anaerobic metabolism, functioning optimally at a temperature of 60.0 °C. As a chemoheterotroph, this strain derives its energy from organic compounds, adapting to various habitats where such substrates are available. The ability to thrive in multiple environments suggests that strain 10_S10 may possess versatile metabolic pathways, allowing it to exploit diverse organic matter sources. ↵↵The facultative anaerobic nature of this strain indicates its capability to switch between aerobic and anaerobic respiration, which may confer an advantage in fluctuating environmental conditions, such as those found in hot springs or other geothermal sites where oxygen levels can vary. This adaptability highlights the potential ecological role of Thermus scotoductus strain 10_S10 in nutrient cycling and organic matter degradation in thermophilic environments. Understanding its metabolic capabilities may provide insights into the microbial dynamics of extreme habitats and the potential applications of such organisms in biotechnology, particularly in processes involving high-temperature bioconversion." Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus Rod No 1 facultative anaerobe 60 Chemoheterotroph Thermophilic Multiple Nonsporulating 37636 PEMN00000000.1 Bac0017850 Pseudomonas sp. 382 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 382 1751969 PEMX00000000.1 Bac0017851 Prevotella intermedia strain KCOM 2833 "Prevotella intermedia strain KCOM 2833 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments. This strain is predominantly found in diverse habitats associated with the human and animal microbiomes, including the gingival sulci, gut, oral cavity, rumen, and various dental biofilms, specifically within subgingival and supragingival plaque, as well as the urogenital tract.↵↵As an anaerobic organism, Prevotella intermedia strain KCOM 2833 relies on environments devoid of oxygen for its survival and growth, which is characteristic of many species within the Prevotella genus. Its presence in the oral cavity and dental biofilms suggests a role in complex microbial communities, where it may contribute to the dynamics of oral health and disease. The strain's ability to inhabit both the gingival environment and the gut indicates its potential involvement in inter-compartmental microbial interactions, highlighting the interconnectedness of microbial communities across different anatomical sites.↵↵Understanding the ecological roles of Prevotella intermedia strain KCOM 2833 can provide insights into the maintenance of microbial homeostasis and the potential consequences of dysbiosis in oral and systemic health. This strain exemplifies the complex interplay of microorganisms in the human microbiome, where specific taxa can have significant implications for both local and systemic environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 PENH00000000.1 Bac0017852 Fusobacterium polymorphum strain KCOM 1265 "Fusobacterium polymorphum strain KCOM 1265 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs and is characterized as a nonsporulating organism. This strain thrives optimally at a temperature of 37.0 °C, which aligns with its adaptation to the host gut environment. As a chemoheterotroph, F. polymorphum strain KCOM 1265 derives its energy from organic compounds, reflecting its ecological role within the gut microbiome.↵↵Fusobacterium species, including strain KCOM 1265, are known to inhabit anaerobic environments, making them well-suited for the low-oxygen conditions prevalent in the gastrointestinal tract. The presence of this strain in the host gut suggests a potential contribution to the complex microbial community, influencing gut health and possibly participating in metabolic processes that benefit the host. Understanding the specific functions and interactions of F. polymorphum strain KCOM 1265 within its habitat could provide insights into its role in digestive health and the maintenance of gut microbial balance." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum Negative Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 PEQW00000000.1 Bac0017853 Fusobacterium pseudoperiodonticum strain KCOM 1259 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum 2663009 PEQY00000000.1 Bac0017854 Methylomonas sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas sp. 418 PERU00000000.1 Bac0017855 Prevotella intermedia strain KCOM 2069 "Prevotella intermedia strain KCOM 2069 is a Gram-negative, rod-shaped anaerobic bacterium primarily found in diverse habitats, including the gingival sulci, gut, oral cavity, rumen, and the urogenital tract. This strain is particularly associated with both subgingival and supragingival dental biofilms, as well as subgingival plaque, indicating its role in the complex microbial communities present in these environments. The anaerobic nature of Prevotella intermedia suggests that it thrives in low-oxygen conditions, which are characteristic of the aforementioned habitats.↵↵The presence of Prevotella intermedia in the oral cavity, especially within dental biofilms, may contribute to its ecological interactions with other microorganisms, highlighting its potential role in the maintenance of oral health as well as its involvement in dysbiotic conditions. Moreover, its ability to inhabit the gut and rumen indicates a versatile ecological niche, where it may participate in various metabolic processes, such as fermentation of dietary fibers. This adaptability underscores the importance of P. intermedia in both oral and gastrointestinal microbiomes, potentially influencing nutrient absorption and microbial community dynamics. Understanding the ecological roles of strains like KCOM 2069 can provide insights into microbial interactions and the maintenance of homeostasis in human and animal hosts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella intermedia Negative Rod Anaerobe gingival sulci; gut; oral cavity; rumen; subgingival and supragingival dental biofilms; subgingival plaque; urogenital tract Human 28131 PESN00000000.1 Bac0017856 Prochlorococcus marinus str. XMU1401 "Prochlorococcus marinus str. XMU1401 is a Gram-negative, coccoid cyanobacterium that utilizes photosynthesis as its primary energy source. This microbe thrives in aquatic environments, where it plays a significant role in primary production and contributes to the overall carbon cycling in marine ecosystems. ↵↵As a member of the Prochlorococcus genus, str. XMU1401 is characterized by its small cell size and high photosynthetic efficiency, enabling it to dominate in oligotrophic (nutrient-poor) waters. The unique adaptations of this strain allow it to harness light energy effectively, even under low-light conditions, which is essential for survival in its aquatic habitat.↵↵This microbe's ability to perform photosynthesis not only supports its own growth and reproduction but also influences the microbial community structure and nutrient dynamics in marine environments. The presence of Prochlorococcus marinus str. XMU1401 in these ecosystems serves as a crucial indicator of environmental changes and can have profound implications for understanding the response of marine communities to shifting ocean conditions, such as those induced by climate change. The ecological significance of this strain underscores the broader role that phytoplankton play in marine food webs and biogeochemical cycles." Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus Negative Cocci No 1 2 Photosynthetic Mesophilic Aquatic Free living 2052594 PESY00000000.1 Bac0017857 Nitrospirae bacterium CG01_land_8_20_14_3_00_44_22 Pseudomonadati Nitrospirota Nitrospirae bacterium CG01_land_8_20_14_3_00_44_22 1974064 PETK00000000.1 Bac0017858 Bacteroidetes bacterium CG02_land_8_20_14_3_00_31_25 Pseudomonadati Bacteroidota Bacteroidetes bacterium CG02_land_8_20_14_3_00_31_25 1973923 PETO00000000.1 Bac0017859 Elusimicrobia bacterium CG06_land_8_20_14_3_00_38_11 Pseudomonadati Elusimicrobiota Elusimicrobia bacterium CG06_land_8_20_14_3_00_38_11 2014307 PEVQ00000000.1 Bac0017860 Candidatus Micrarchaeota archaeon CG06_land_8_20_14_3_00_50_6 Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG06_land_8_20_14_3_00_50_6 1974412 PEVS00000000.1 Bac0017861 Candidatus Hydrogenedentes bacterium Pseudomonadati Candidatus Hydrogenedentota Candidatus Hydrogenedentes bacterium CG07_land_8_20_14_0_80_42_17 1974588 PEWQ00000000.1 Bac0017862 Ignavibacteriales bacterium CG07_land_8_20_14_0_80_59_12 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriales bacterium CG07_land_8_20_14_0_80_59_12 1974045 PEWR00000000.1 Bac0017863 Candidatus Diapherotrites archaeon Nanobdellati Candidatus Iainarchaeota Candidatus Diapherotrites archaeon CG08_land_8_20_14_0_20_34_12 1974404 PEXL00000000.1 Bac0017864 Candidatus Micrarchaeota archaeon Nanobdellati Microcaldota Candidatus Micrarchaeota archaeon CG08_land_8_20_14_0_20_59_11 1974414 PEXZ00000000.1 Bac0017865 Fidelibacterota bacterium CG08_land_8_20_14_0_20_45_22 Pseudomonadati Fidelibacterota Fidelibacterota bacterium CG08_land_8_20_14_0_20_45_22 1975524 PEYN00000000.1 Bac0017866 Candidatus Pacearchaeota archaeon Nanobdellati Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_30_48 1974437 PFCU00000000.1 Bac0017867 Candidatus Uhrbacteria bacterium Candidatus Uhriibacteriota Candidatus Uhrbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_48_11 1975037 PFET00000000.1 Bac0017868 Candidatus Aenigmarchaeota archaeon Nanobdellati Candidatus Aenigmatarchaeota Candidatus Aenigmarchaeota archaeon CG15_BIG_FIL_POST_REV_8_21_14_020_37_27 1974383 PFGF00000000.1 Bac0017869 Shewanella sp. CG12_big_fil_rev_8_21_14_0_65_47_15 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sp. CG12_big_fil_rev_8_21_14_0_65_47_15 1975537 PFGL00000000.1 Bac0017870 Candidatus Bathyarchaeota archaeon CG_4_8_14_3_um_filter_42_8 Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeota archaeon CG_4_8_14_3_um_filter_42_8 1974384 PFIN00000000.1 Bac0017871 Candidatus Altarchaeum sp. CG_4_8_14_3_um_filter_33_2054 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeaceae Candidatus Altarchaeum Candidatus Altarchaeum sp. CG_4_8_14_3_um_filter_33_2054 2014239 PFIU00000000.1 Bac0017872 Piscirickettsiaceae bacterium CG_4_10_14_3_um_filter_44_349 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsiaceae bacterium CG_4_10_14_3_um_filter_44_349 1974075 PFJL00000000.1 Bac0017873 Ignavibacteria bacterium CG_4_10_14_3_um_filter_37_18 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium CG_4_10_14_3_um_filter_37_18 1974037 PFJW00000000.1 Bac0017874 Hydrogenophilales bacterium CG_4_10_14_3_um_filter_63_21 Pseudomonadati Pseudomonadota Hydrogenophilia Hydrogenophilales Hydrogenophilales bacterium CG_4_10_14_3_um_filter_63_21 1974028 PFJX00000000.1 Bac0017875 Flavobacteriaceae bacterium CG_4_10_14_3_um_filter_31_253 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium CG_4_10_14_3_um_filter_31_253 1973987 PFKF00000000.1 Bac0017876 Nitrosopumilales archaeon CG_4_10_14_0_8_um_filter_34_8 Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilales archaeon CG_4_10_14_0_8_um_filter_34_8 2022695 PFLV00000000.1 Bac0017877 Candidatus Altarchaeum sp. CG_4_10_14_0_8_um_filter_32_851 Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeaceae Candidatus Altarchaeum Candidatus Altarchaeum sp. CG_4_10_14_0_8_um_filter_32_851 2014238 PFNC00000000.1 Bac0017878 Candidatus Peregrinibacteria bacterium Candidatus Peregrinibacteriota Candidatus Peregrinibacteria bacterium CG_4_10_14_0_2_um_filter_43_11 1974776 PFOK00000000.1 Bac0017879 Flavobacteriales bacterium CG_4_10_14_0_2_um_filter_35_18 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriales bacterium CG_4_10_14_0_2_um_filter_35_18 1973999 PFPU00000000.1 Bac0017880 Alphaproteobacteria bacterium CG_4_10_14_0_2_um_filter_63_37 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium CG_4_10_14_0_2_um_filter_63_37 1973896 PFQI00000000.1 Bac0017881 Ignavibacteria bacterium CG_4_9_14_0_2_um_filter_37_13 Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteria bacterium CG_4_9_14_0_2_um_filter_37_13 1974039 PFRC00000000.1 Bac0017882 Acidobacteria bacterium CG_4_9_14_3_um_filter_49_7 Pseudomonadati Acidobacteriota Acidobacteria bacterium CG_4_9_14_3_um_filter_49_7 1973888 PFTO00000000.1 Bac0017883 Alphaproteobacteria bacterium CG_4_9_14_3_um_filter_47_13 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium CG_4_9_14_3_um_filter_47_13 1973899 PFTR00000000.1 Bac0017884 Anaerolineae bacterium CG_4_9_14_3_um_filter_57_17 Bacillati Chloroflexota Anaerolineae Anaerolineae bacterium CG_4_9_14_3_um_filter_57_17 1973904 PFTS00000000.1 Bac0017885 Flavobacteriaceae bacterium CG_4_9_14_3_um_filter_33_16 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacteriaceae bacterium CG_4_9_14_3_um_filter_33_16 1973993 PFUP00000000.1 Bac0017886 Flavobacteriales bacterium CG_4_9_14_3_um_filter_40_17 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriales bacterium CG_4_9_14_3_um_filter_40_17 1974005 PFUR00000000.1 Bac0017887 bacterium CG_4_9_14_3_um_filter_65_15 bacterium CG_4_9_14_3_um_filter_65_15 1975567 PFVX00000000.1 Bac0017888 Methanofollis fontis strain FWC-SCC2 FWC-SCC2_22_length_277 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis fontis 2052832 PGCL00000000.1 Bac0017889 Pseudomonas sp. FEMGT703P Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FEMGT703P 2080764 PGCM00000000.1 Bac0017890 Aeromonas lusitana strain MDC 2473 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas lusitana 931529 PGCP00000000.1 Bac0017891 Brevirhabdus pacifica strain DSM 27767 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Brevirhabdus Brevirhabdus pacifica 1267768 PGFI00000000.1 Bac0017892 Mucilaginibacter auburnensis strain DSM 28175 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter auburnensis 1457233 PGFJ00000000.1 Bac0017893 Phyllobacterium sophorae strain CCBAU 03422 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium sophorae 1520277 PGGM00000000.1 Bac0017894 Phyllobacterium endophyticum strain PEPV15 "Phyllobacterium endophyticum strain PEPV15 is a Gram-negative, rod-shaped microbe that exhibits aerobic growth and is non-spore-forming, with an optimal growth temperature of 29.0°C. This strain is part of the diverse Phyllobacterium genus, which is known for its endophytic capabilities, suggesting potential interactions with plant host systems.↵↵The Gram-negative cell wall structure of P. endophyticum strain PEPV15 likely contributes to its adaptability in oxygen-rich environments, allowing it to thrive in various ecological niches. Its rod shape may facilitate motility and nutrient uptake, enhancing its ability to colonize host plants or other substrates effectively. The specific temperature preference indicates that this microbe may be well-suited to moderate climates or specific plant growth conditions.↵↵Further investigation into the biological roles of Phyllobacterium endophyticum strain PEPV15 within its environment could reveal insights into its potential contributions to plant health or soil microbiome dynamics. Understanding its symbiotic relationships may provide valuable information regarding its ecological role in promoting plant growth or influencing microbial community structures." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium endophyticum Gram-negative rod aerobic 29 mesophilic non-spore-forming 1149773 PGGN00000000.1 Bac0017895 Phyllobacterium brassicacearum strain STM 196 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium brassicacearum 314235 PGGO00000000.1 Bac0017896 Bifidobacterium scaligerum strain TRE D Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium scaligerum 2052656 PGLQ00000000.1 Bac0017897 Pseudorhodobacter sp. MZDSW-24AT Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudorhodobacter Pseudorhodobacter sp. MZDSW-24AT 2052957 PGOI00000000.1 Bac0017898 Acinetobacter pseudolwoffii strain ANC 5347 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pseudolwoffii 2053287 PGOZ00000000.1 Bac0017899 Pseudooceanicola lipolyticus strain 157 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola lipolyticus 2029104 PGTB00000000.1 Bac0017900 Candidatus Thermofonsia Clade 1 bacterium Bacillati Chloroflexota Candidatus Thermofontia Candidatus Thermofonsia Clade 1 bacterium 2364210 PGTM00000000.1 Bac0017901 Paramagnetospirillum kuznetsovii strain LBB-42 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Magnetospirillaceae Paramagnetospirillum Paramagnetospirillum kuznetsovii 2053833 PGTO00000000.1 Bac0017902 Luteimicrobium subarcticum strain DSM 22413 "Luteimicrobium subarcticum strain DSM 22413 is a Gram-positive, rod-shaped bacterium that exhibits aerobic growth and is non-spore-forming. This microbe thrives optimally at a temperature of 29.0°C, indicating a potential preference for moderately cool environments. The Gram-positive nature of L. subarcticum suggests a thicker peptidoglycan layer in its cell wall, which is characteristic of this group and may confer certain advantages in specific ecological niches.↵↵The aerobic requirement of L. subarcticum implies that it relies on oxygen for its metabolic processes, which may influence its habitat preferences and interactions with other microbial communities. Given its optimal growth temperature, L. subarcticum is likely adapted to environments that do not exceed moderate temperature ranges, potentially aligning with subarctic or temperate ecosystems.↵↵The non-spore-forming characteristic of this strain could render it more susceptible to environmental stresses compared to spore-forming bacteria, affecting its survival strategies and ecological roles. Understanding the growth conditions and physiological traits of Luteimicrobium subarcticum can provide insights into its potential applications in biotechnological processes and its interactions within microbial communities in cooler habitats. Further exploration of its metabolic capabilities might reveal unique functions that contribute to nutrient cycling or other ecological processes in its native environment." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcales_Incertae_Sedis Luteimicrobium Luteimicrobium subarcticum Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 620910 PGTZ00000000.1 Bac0017903 Peribacillus deserti strain V1-29 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus deserti 673318 PGUY00000000.1 Bac0017904 Bacillus sp. V3-13 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. V3-13 2053728 PGUZ00000000.1 Bac0017905 Bacillus canaveralius strain M4.6 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus canaveralius 1403243 PGVA00000000.1 Bac0017906 Bacillus sp. T33-2 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. T33-2 2054168 PGVB00000000.1 Bac0017907 Neobacillus cucumis strain V32-6 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Neobacillus Neobacillus cucumis 1740721 PGVE00000000.1 Bac0017908 Bradyrhizobium forestalis strain INPA54B Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium forestalis 1419263 PGVG00000000.1 Bac0017909 Staphylococcus aureus strain G703N2B1 "Staphylococcus aureus strain G703N2B1 is a Gram-positive coccus that typically appears in clusters or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth of G703N2B1 is observed at a remarkably low temperature of 3.0°C, suggesting a potential adaptation to cold environments, which is unusual for many strains of Staphylococcus aureus typically found in warmer habitats.↵↵The strain is host-associated, indicating that it may rely on a biological host for its survival and propagation. This association could imply a role in various ecological interactions, possibly including symbiotic or opportunistic relationships with its host. The ability to grow at lower temperatures may permit G703N2B1 to inhabit niches that are less accessible to other Staphylococcus strains, potentially influencing its ecological role in its natural habitat. Understanding the specific environmental conditions and interactions of this strain could provide insights into its adaptability and potential ecological significance in cold-associated environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 PGWZ00000000.1 Bac0017910 candidate division Zixibacteria bacterium HGW-Zixibacteria-1 Pseudomonadati Candidatus Zixiibacteriota candidate division Zixibacteria bacterium HGW-Zixibacteria-1 2013855 PGXB00000000.1 Bac0017911 Candidatus Wallbacteria bacterium HGW-Wallbacteria-1 Candidatus Walliibacteriota Candidatus Wallbacteria bacterium HGW-Wallbacteria-1 2013854 PGXC00000000.1 Bac0017912 Spirochaetae bacterium HGW-Spirochaetae-7 Pseudomonadati Spirochaetota Spirochaetae bacterium HGW-Spirochaetae-7 2013839 PGXR00000000.1 Bac0017913 Spirochaetae bacterium HGW-Spirochaetae-3 Pseudomonadati Spirochaetota Spirochaetae bacterium HGW-Spirochaetae-3 2013835 PGXV00000000.1 Bac0017914 Spirochaetae bacterium HGW-Spirochaetae-1 Pseudomonadati Spirochaetota Spirochaetae bacterium HGW-Spirochaetae-1 2013832 PGXY00000000.1 Bac0017915 Methanomicrobiales archaeon HGW-Methanomicrobiales-6 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiales archaeon HGW-Methanomicrobiales-6 2013822 PGYH00000000.1 Bac0017916 Ignavibacteriae bacterium HGW-Ignavibacteriae-1 Pseudomonadati Ignavibacteriota Ignavibacteriae bacterium HGW-Ignavibacteriae-1 2013808 PGYU00000000.1 Bac0017917 Candidatus Goldiibacteriota bacterium HGW-Goldbacteria-1 Candidatus Goldiibacteriota Candidatus Goldiibacteriota bacterium HGW-Goldbacteria-1 2013807 PGYV00000000.1 Bac0017918 Gammaproteobacteria bacterium HGW-Gammaproteobacteria-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium HGW-Gammaproteobacteria-3 2013799 PGZD00000000.1 Bac0017919 Gammaproteobacteria bacterium HGW-Gammaproteobacteria-13 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium HGW-Gammaproteobacteria-13 2013795 PGZH00000000.1 Bac0017920 Gammaproteobacteria bacterium HGW-Gammaproteobacteria-11 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium HGW-Gammaproteobacteria-11 2013793 PGZJ00000000.1 Bac0017921 Gammaproteobacteria bacterium HGW-Gammaproteobacteria-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium HGW-Gammaproteobacteria-10 2013792 PGZK00000000.1 Bac0017922 Gammaproteobacteria bacterium HGW-Gammaproteobacteria-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Gammaproteobacteria bacterium HGW-Gammaproteobacteria-1 2013791 PGZL00000000.1 Bac0017923 Firmicutes bacterium HGW-Firmicutes-7 Bacillati Bacillota Firmicutes bacterium HGW-Firmicutes-7 2013788 PGZO00000000.1 Bac0017924 Firmicutes bacterium HGW-Firmicutes-16 Bacillati Bacillota Firmicutes bacterium HGW-Firmicutes-16 2013777 PGZZ00000000.1 Bac0017925 Euryarchaeota archaeon HGW-Euryarchaeota-1 Nanobdellati Candidatus Huberarchaeota Candidatus Huberarchaeia Candidatus Huberarchaeales Candidatus Huberarchaeaceae Candidatus Huberarchaeum Candidatus Huberarchaeum julieae 2013767 PHAJ00000000.1 Bac0017926 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21 Deltaproteobacteria Deltaproteobacteria bacterium HGW-Deltaproteobacteria-21 2013749 PHBA00000000.1 Bac0017927 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-13 Deltaproteobacteria Deltaproteobacteria bacterium HGW-Deltaproteobacteria-13 2013740 PHBJ00000000.1 Bac0017928 Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-2 Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-2 2013734 PHBP00000000.1 Bac0017929 Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-1 Pseudomonadati Candidatus Cloacimonadota Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-1 2013733 PHBQ00000000.1 Bac0017930 Chloroflexi bacterium HGW-Chloroflexi-8 Bacillati Chloroflexota Chloroflexi bacterium HGW-Chloroflexi-8 2013731 PHBS00000000.1 Bac0017931 Chloroflexi bacterium HGW-Chloroflexi-2 Bacillati Chloroflexota Chloroflexi bacterium HGW-Chloroflexi-2 2013725 PHBY00000000.1 Bac0017932 candidate division BRC1 bacterium HGW-BRC1-1 Candidatus Sumerlaeota candidate division BRC1 bacterium HGW-BRC1-1 2013722 PHCB00000000.1 Bac0017933 Betaproteobacteria bacterium HGW-Betaproteobacteria-9 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-9 2013721 PHCC00000000.1 Bac0017934 Betaproteobacteria bacterium HGW-Betaproteobacteria-7 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-7 2013719 PHCE00000000.1 Bac0017935 Betaproteobacteria bacterium HGW-Betaproteobacteria-18 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-18 2013709 PHCO00000000.1 Bac0017936 Betaproteobacteria bacterium HGW-Betaproteobacteria-16 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-16 2013707 PHCQ00000000.1 Bac0017937 Betaproteobacteria bacterium HGW-Betaproteobacteria-14 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-14 2013705 PHCS00000000.1 Bac0017938 Betaproteobacteria bacterium HGW-Betaproteobacteria-12 Pseudomonadati Pseudomonadota Betaproteobacteria Betaproteobacteria bacterium HGW-Betaproteobacteria-12 2013703 PHCU00000000.1 Bac0017939 Bacteroidetes bacterium HGW-Bacteroidetes-9 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-9 2013699 PHCY00000000.1 Bac0017940 Bacteroidetes bacterium HGW-Bacteroidetes-5 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-5 2013695 PHDC00000000.1 Bac0017941 Bacteroidetes bacterium HGW-Bacteroidetes-10 Pseudomonadati Bacteroidota Bacteroidetes bacterium HGW-Bacteroidetes-10 2013678 PHDT00000000.1 Bac0017942 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-7 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-7 2013670 PHEB00000000.1 Bac0017943 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-6 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-6 2013669 PHEC00000000.1 Bac0017944 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-18 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-18 2013664 PHEH00000000.1 Bac0017945 Alphaproteobacteria bacterium HGW-Alphaproteobacteria-16 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium HGW-Alphaproteobacteria-16 2013662 PHEJ00000000.1 Bac0017946 Actinobacteria bacterium HGW-Actinobacteria-11 Bacillati Actinomycetota Actinobacteria bacterium HGW-Actinobacteria-11 2013646 PHEZ00000000.1 Bac0017947 Caviibacterium pharyngocola strain 7.3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Caviibacterium Caviibacterium pharyngocola 28159 PHGZ00000000.1 Bac0017948 Bacillus cereus strain CVC_S1 "Bacillus cereus strain CVC_S1 is a Gram-positive, rod-shaped bacterium that typically forms chains and demonstrates aerobic growth. This strain thrives optimally at a temperature of 25.0°C and is found in diverse habitats, indicating its ecological versatility. ↵↵As a member of the Bacillus genus, B. cereus is known for its ability to survive in various environments, often exhibiting resilience in the face of fluctuating conditions. The aerobic nature of strain CVC_S1 suggests that it relies on oxygen for its metabolic processes, which may influence its distribution in environments where oxygen is readily available. ↵↵The ability to form chains may facilitate biofilm development, potentially contributing to its survival and colonization in its natural habitats. Given the strain's adaptability to multiple environments and its optimal growth temperature, B. cereus strain CVC_S1 may play a role in nutrient cycling and microbial community dynamics in its ecological niche. Further investigations could elucidate its specific interactions within these communities and its contributions to environmental processes." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 PHHT00000000.1 Bac0017949 Bacillus sp. SN1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. SN1 2055158 PHIE00000000.1 Bac0017950 Achromobacter ruhlandii strain Ar319 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter ruhlandii 72557 PHIH00000000.1 Bac0017951 Pseudomonas sp. S10E 269 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. S10E 269 2054917 PHIJ00000000.1 Bac0017952 Xanthomonas prunicola strain CFBP 8353 CFBP835396 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas prunicola 2053930 PHKV00000000.1 Bac0017953 Entomoplasma ellychniae strain ELCN-1 entomo01.02.3 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Entomoplasma Entomoplasma ellychniae 2114 PHND00000000.1 Bac0017954 Stenotrophomonas lactitubi strain M15 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas lactitubi 2045214 PHQX00000000.1 Bac0017955 Neisseria sp. N177_16 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sp. N177_16 2056175 PHTC00000000.1 Bac0017956 Novosphingobium kunmingense strain CGMCC 1.12274 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium kunmingense 1211806 PHUF00000000.1 Bac0017957 Pseudonocardia alni strain DSM 44104 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia alni 29 mesophilic spore-forming 33907 PHUJ00000000.1 Bac0017958 Bifidobacterium longum strain UMA026 "Bifidobacterium longum strain UMA026 is a Gram-positive, non-sporulating rod-shaped bacterium that typically resides in host-associated environments, making it an important member of the gut microbiota. This strain exhibits a unique cellular arrangement, occurring in clusters, pairs, and singles, which may contribute to its functional diversity within the microbial community. ↵↵Bifidobacterium longum UMA026 thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions of its mammalian hosts. As an anaerobic organism, it relies on environments devoid of oxygen, which is characteristic of the intestinal tract where it plays a significant role in maintaining gut health. ↵↵The presence of Bifidobacterium longum strains in the gastrointestinal microbiome is well-documented, where they are known to support various metabolic processes and contribute to the fermentation of dietary fibers, ultimately producing short-chain fatty acids that are beneficial for colonic health. Given these traits, Bifidobacterium longum strain UMA026 likely participates in complex interactions within the gut ecosystem, influencing both host metabolism and microbial community structure, while potentially providing insights into the development of probiotic applications aimed at enhancing gut health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 PHUM00000000.1 Bac0017959 Streptomyces albidoflavus strain TBG-S13A5 "Streptomyces albidoflavus strain TBG-S13A5 is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its diverse metabolic capabilities and significant role in natural product biosynthesis. This strain, like others in its genus, likely exhibits filamentous growth, characteristic of many actinobacteria, and is expected to possess a complex life cycle that includes spore formation.↵↵The Gram-positive nature of S. albidoflavus strain TBG-S13A5 suggests that it possesses a thick peptidoglycan layer in its cell wall, which may confer certain advantages, such as enhanced resistance to environmental stressors compared to Gram-negative bacteria. This structural feature is commonly associated with the ecological success of Streptomyces species in various terrestrial environments, where they play a crucial role in nutrient cycling and organic matter degradation.↵↵Furthermore, the metabolic pathways present in Streptomyces species are well-documented to include the production of various secondary metabolites, some of which have significant pharmaceutical applications, including antibiotics and antifungals. While specific biochemical capabilities of strain TBG-S13A5 are not detailed herein, its classification suggests potential for biotechnological exploitation.↵↵Understanding the traits of S. albidoflavus strain TBG-S13A5 can provide insights into its ecological functions, particularly in soil health and plant-microbe interactions, highlighting the importance of Streptomyces species in maintaining ecosystem balance and promoting plant growth through the suppression of soil-borne pathogens." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PIBK00000000.1 Bac0017960 Raoultella sp. T31 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Raoultella sp. T31 2054594 PIBO00000000.1 Bac0017961 Klebsiella variicola strain A8 "Klebsiella variicola strain A8 is a Gram-negative, rod-shaped bacterium characterized by its ability to arrange in chains, pairs, or as single cells. This strain does not undergo sporulation and demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is 37.0 °C, which aligns with the typical conditions found in various host-associated habitats. ↵↵As a member of the Klebsiella genus, K. variicola is known to inhabit diverse biological niches, often in association with plants and animals. The facultative anaerobic nature of strain A8 suggests a versatile metabolic capacity, enabling it to adapt to fluctuating oxygen levels in its environment. This adaptability may contribute to its survival in host-associated environments where oxygen availability can vary significantly. ↵↵The presence of K. variicola strain A8 in host-associated habitats highlights its potential role in microbial communities, where it may participate in nutrient cycling or influence host physiology. Further research could elucidate its interactions within these ecosystems, offering insights into its ecological significance and potential applications in biotechnology or agriculture." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella variicola Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 244366 PIDP00000000.1 Bac0017962 Vibrio splendidus strain ZF_41 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 PIEV00000000.1 Bac0017963 Vibrio splendidus strain FF_144 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio splendidus Marine Animal 29497 PIFK00000000.1 Bac0017964 Vibrio sp. 10N.286.51.C3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. 10N.286.51.C3 2056190 PIGC00000000.1 Bac0017965 Halomonas sp. 141 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. 141 2056666 PINZ00000000.1 Bac0017966 Aliidiomarina haloalkalitolerans strain AK5 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Aliidiomarina haloalkalitolerans 859059 PIPI00000000.1 Bac0017967 Aliidiomarina iranensis strain GBPy7 "Aliidiomarina iranensis strain GBPy7 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism, thriving optimally at a temperature of 37.0 °C. As a heterotroph, this strain utilizes organic compounds as its energy source, indicating its ability to adapt to varying environmental conditions by switching between aerobic and anaerobic respiration based on oxygen availability.↵↵The rod shape and Gram-negative classification suggest certain structural and functional characteristics, including a thinner peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in the organism's interactions with its environment. The ability to function in both oxygen-rich and oxygen-poor conditions could confer advantages in diverse habitats, potentially allowing strain GBPy7 to inhabit environments with fluctuating oxygen levels.↵↵This strain exemplifies the metabolic versatility often found in marine microorganisms, which are crucial for nutrient cycling in marine ecosystems. The facultative anaerobic capability may enable Aliidiomarina iranensis strain GBPy7 to thrive in anoxic zones, contributing to the degradation of organic matter and influencing the microbial community dynamics in its ecological niche. Further studies could elucidate its specific roles within marine microbiomes, particularly in biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Aliidiomarina iranensis Gram-negative rod facultative aerobe/anaerobe 37 heterotroph mesophilic 1434071 PIPJ00000000.1 Bac0017968 Aliidiomarina minuta strain MLST1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Aliidiomarina minuta 880057 PIPL00000000.1 Bac0017969 Aliidiomarina sanyensis strain GYP-17 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Aliidiomarina sanyensis 1249555 PIPM00000000.1 Bac0017970 Aliidiomarina shirensis strain AIS Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Aliidiomarina shirensis 1048642 PIPP00000000.1 Bac0017971 Aliidiomarina taiwanensis strain AIT1 "Aliidiomarina taiwanensis strain AIT1 is a Gram-negative, rod-shaped bacterium that exhibits an aerobic metabolism and thrives at an optimal temperature of 37.0°C. As a non-spore-forming microbe, AIT1 does not produce spores as a means of survival under adverse environmental conditions, which may influence its ecological niche and interactions within its habitat.↵↵The Gram-negative nature of strain AIT1 suggests the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, characteristics that could affect its susceptibility to certain antibiotics and its interactions with other organisms. The rod shape may contribute to its motility and nutrient absorption efficiency, facilitating its adaptation to aerobic environments where oxygen is readily available.↵↵Understanding the physiological traits of Aliidiomarina taiwanensis strain AIT1 may provide insights into its role in biogeochemical cycles, particularly in oxygen-rich aquatic environments. The strain's optimal growth temperature aligns with typical mammalian body temperatures, which could suggest potential interactions with host-associated microbiomes or involvement in decomposition processes in marine ecosystems. Further studies are warranted to elucidate its ecological roles and potential applications in biotechnology, particularly in bioremediation or waste treatment in aerobic conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Aliidiomarina taiwanensis Gram-negative rod aerobic 37 mesophilic non-spore-forming 946228 PIPQ00000000.1 Bac0017972 Pseudidiomarina donghaiensis strain 908033 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina donghaiensis 519452 PIPU00000000.1 Bac0017973 Pseudidiomarina homiensis strain PO-M2 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina homiensis 364198 PIPX00000000.1 Bac0017974 Pseudidiomarina sediminum strain c121 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina sediminum 431675 PIQE00000000.1 Bac0017975 Idiomarina seosinensis strain CL-SP19 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina seosinensis 281739 PIQF00000000.1 Bac0017976 Idiomarina tyrosinivorans strain CC-PW-9 "Idiomarina tyrosinivorans strain CC-PW-9 is a Gram-negative, non-spore-forming bacterium characterized by a curved or spiral shape. This microorganism exhibits aerobic metabolism, indicating its reliance on oxygen for growth and energy production. The optimal growth temperature for strain CC-PW-9 is 37.0°C, suggesting that it thrives in mesophilic environments, which may be reflective of its natural habitat.↵↵As a member of the Idiomarina genus, this strain likely possesses metabolic capabilities that allow it to utilize various organic compounds, including tyrosine, as substrates for growth. The specific ability to degrade tyrosine could provide ecological advantages in nutrient-rich environments where this amino acid is prevalent, such as in marine settings or decaying organic matter. Furthermore, its aerobic nature may play a crucial role in biogeochemical cycling within its ecosystem, potentially influencing carbon and nitrogen dynamics.↵↵Overall, Idiomarina tyrosinivorans strain CC-PW-9 represents a fascinating example of microbial adaptation to specific environmental conditions, and its metabolic pathways may contribute to the ecological balance in its native habitats. Understanding the traits and ecological roles of such microbes can provide insight into the complexity of microbial communities and their interactions with the environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina tyrosinivorans Gram-negative curved/spiral motile aerobic 37 mesophilic non-spore-forming 1445662 PIQH00000000.1 Bac0017977 Rhizobium sullae strain HCNT1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sullae 50338 PIQN00000000.1 Bac0017978 Pseudomonas hunanensis strain P11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas hunanensis 1247546 PISL00000000.1 Bac0017979 Rhodohalobacter barkolensis strain 15182 Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Rhodohalobacter Rhodohalobacter barkolensis 2053187 PISP00000000.1 Bac0017980 Streptomyces sp. EAG2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. EAG2 2056495 PITL00000000.1 Bac0017981 Telmatospirillum siberiense strain 26-4b1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Telmatospirillum Telmatospirillum siberiense microaerophile 382514 PIUM00000000.1 Bac0017982 Macrococcoides caseolyticum strain 5804_BC29 "Macrococcoides caseolyticum strain 5804_BC29 is a Gram-positive coccus that typically forms clusters and singles. This bacterium thrives optimally at a temperature of 35.0°C and is classified as an aerobe, indicating that it requires oxygen for growth. The strain has been identified in multiple habitats, suggesting a versatile ecological presence.↵↵The morphological characteristics of Macrococcoides caseolyticum strain 5804_BC29, particularly its coccoid shape and clustering arrangement, may confer advantages in nutrient acquisition and protection from environmental stressors. The ability to grow in various habitats highlights its potential adaptability and resilience in diverse ecological niches. Understanding the specific environmental conditions and roles of this strain could provide insights into its ecological significance, particularly in contexts where microbial communities interact closely with their environments. Further research may elucidate its functional contributions to nutrient cycling or its relationships with other microorganisms within its habitats." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides caseolyticum Positive Cocci No 1 1 Aerobe 35 Mesophilic Multiple Free living Clusters - Singles 69966 PIXJ00000000.1 Bac0017983 Alteromonadales bacterium alter-6D02 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadales bacterium alter-6D02 2058087 PIZK00000000.1 Bac0017984 Chryseobacterium sp. PMSZPI Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. PMSZPI 1033900 PIZV00000000.1 Bac0017985 Colwellia sp. 12G3 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. 12G3 2058299 PJAQ00000000.1 Bac0017986 Colwellia sp. 75C3 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. 75C3 888425 PJAU00000000.1 Bac0017987 Tenacibaculum sp. Bg11-29 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum sp. Bg11-29 2058306 PJBB00000000.1 Bac0017988 Pseudomonas sp. Choline-02u-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Choline-02u-1 2058307 PJBC00000000.1 Bac0017989 Pseudomonas sp. Choline-3u-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Choline-3u-10 2058311 PJBG00000000.1 Bac0017990 Halomonas sp. Choline-3u-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. Choline-3u-9 2058313 PJBI00000000.1 Bac0017991 Pseudoalteromonas sp. GutCa3 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. GutCa3 888433 PJBK00000000.1 Bac0017992 Psychromonas sp. MB-3u-54 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas sp. MB-3u-54 2058319 PJBP00000000.1 Bac0017993 Psychrobacter sp. Sarcosine-3u-12 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. Sarcosine-3u-12 2058325 PJBY00000000.1 Bac0017994 Psychromonas sp. Urea-02u-13 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Psychromonadaceae Psychromonas Psychromonas sp. Urea-02u-13 2058326 PJBZ00000000.1 Bac0017995 Moritella sp. Urea-trap-13 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Moritellaceae Moritella Moritella sp. Urea-trap-13 2058327 PJCA00000000.1 Bac0017996 Pseudomonas guariconensis strain MR149 MR149_89 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas guariconensis 1288410 PJCR00000000.1 Bac0017997 Actinomycetales bacterium SN12 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetales bacterium SN12 2058180 PJCV00000000.1 Bac0017998 Bifidobacterium longum strain APC1503 "Bifidobacterium longum strain APC1503 is a Gram-positive, non-sporulating rod-shaped bacterium that typically exists in clusters, pairs, or as single cells. It thrives optimally at 37.0°C and is categorized as an anaerobe, indicating that it requires an oxygen-free environment for growth. This strain is host-associated, suggesting a symbiotic relationship with its host, likely contributing to gut health and microbiota balance.↵↵Bifidobacterium longum strains are generally known for their potential probiotic properties, which may include the enhancement of immune function and the modulation of intestinal microbiota. The specific growth conditions and cell arrangements of strain APC1503 may provide insights into its ecological niche and functional roles within the host's gastrointestinal tract. ↵↵Understanding the characteristics of Bifidobacterium longum strain APC1503 can contribute to further research on its applications in probiotics and gut health management, particularly in the context of maintaining a balanced microbiome in humans and other associated hosts. The strain's anaerobic nature and non-sporulating characteristics emphasize its adaptation to the anaerobic environments typically found in the intestines, which may play a significant role in its functionality and interaction with other gut microbes." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 PJDT00000000.1 Bac0017999 Bifidobacterium longum strain APC1461 "Bifidobacterium longum strain APC1461 is a Gram-positive, anaerobic rod-shaped bacterium that typically forms clusters, pairs, or singles. This strain is nonsporulating and thrives optimally at a temperature of 37.0°C, an environment commonly associated with mammalian hosts. Bifidobacterium longum is known for its presence in the gastrointestinal tract of humans and other animals, where it plays a significant role in maintaining gut health.↵↵As a member of the gut microbiota, Bifidobacterium longum strain APC1461 contributes to the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for maintaining intestinal health and regulating immune responses. The ability of this strain to survive and flourish in anaerobic conditions highlights its adaptation to the unique environment of the gastrointestinal tract, where oxygen levels are significantly lower than in other biological contexts.↵↵The presence of Bifidobacterium longum strain APC1461 in host-associated habitats suggests its involvement in symbiotic relationships within the gut microbiome, potentially aiding in digestion and nutrient absorption. Moreover, its optimal growth temperature aligns with the physiological conditions of the human body, indicating its evolutionary adaptation to life as a gut commensal. Understanding the specific roles and interactions of this strain within the gut ecosystem may provide insights into its contributions to host health and the microbiome's overall stability." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 PJEG00000000.1 Bac0018000 Akkermansia muciniphila strain GP30 "Akkermansia muciniphila strain GP30 is a Gram-negative, anaerobic coccus that typically forms pairs or exists as single cells. This strain is optimized for growth at an optimal temperature of 37.0°C, which corresponds with the conditions found in the gastrointestinal tract of its host. As a host-associated microbe, A. muciniphila strain GP30 likely plays a role in the gut microbiome, potentially influencing host health and contributing to mucin degradation due to its name, ""muciniphila,"" which suggests a capacity for utilizing mucin as a carbon source. ↵↵The anaerobic nature of this strain indicates its reliance on environments devoid of oxygen, which is characteristic of the intestinal milieu where it is commonly found. The ability to thrive in such conditions may facilitate its interactions with other gut microbes and its contribution to the maintenance of gut homeostasis. Given its specific habitat and growth requirements, A. muciniphila strain GP30 may be involved in the modulation of host metabolic functions and immune responses, highlighting the complexity and interdependence of host-microbe interactions in the gastrointestinal ecosystem. Understanding this strain's role could offer insights into the broader implications of gut microbiota on health and disease." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 PJKD00000000.1 Bac0018001 Akkermansia muciniphila strain GP15 "Akkermansia muciniphila strain GP15 is a Gram-negative, anaerobic coccus that typically exists in pairs or as single cells. This microbe thrives optimally at a temperature of 37.0°C, indicating its adaptation to the warm-blooded host environment. Predominantly found in host-associated habitats, A. muciniphila strain GP15 is known for its potential role in the gut microbiome, where it may contribute to the maintenance of mucosal integrity and modulation of host immune responses.↵↵The anaerobic nature of this strain suggests it occupies niches within the gastrointestinal tract that are devoid of oxygen, allowing it to engage in metabolic activities that are essential for its survival and function. The pairing and singular arrangement of its cells may influence its interactions with the host's gut lining and other microbial communities.↵↵Research indicates that A. muciniphila strains like GP15 may play a beneficial role in human health by promoting the degradation of mucin, a key component of the gut mucosal barrier. This metabolic capability allows for the utilization of mucins as a carbon source, potentially impacting gut health by supporting epithelial cell function and contributing to the overall balance of the gut microbiota. Understanding the traits of A. muciniphila strain GP15 could provide insights into its ecological significance in maintaining gut homeostasis and its potential implications for host health." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 PJKF00000000.1 Bac0018002 Akkermansia muciniphila strain GP43 "Akkermansia muciniphila strain GP43 is a Gram-negative, anaerobic cocci that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to the physiological conditions of its host environment. As a member of the mucin-degrading bacteria, A. muciniphila plays a vital role in the gut microbiome, contributing to the degradation of mucin, a key component of the intestinal mucus layer. Its host-associated habitat suggests a symbiotic relationship with the host, potentially influencing gut health and metabolic processes.↵↵The anaerobic nature of A. muciniphila strain GP43 underscores its reliance on low-oxygen environments, which is characteristic of the gastrointestinal tract. Its ability to grow in such conditions enables it to thrive alongside other microbial inhabitants, thereby participating in complex interactions within the gut ecosystem. The presence of A. muciniphila in the gut microbiome has garnered interest due to its potential implications for host health, including its role in maintaining gut barrier integrity and modulating immune responses. ↵↵Overall, the unique adaptations of A. muciniphila strain GP43 to its anaerobic, host-associated environment highlight the importance of microbial diversity in maintaining host homeostasis and suggest avenues for further research into its beneficial roles in gut health." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 PJKN00000000.1 Bac0018003 Akkermansia muciniphila strain GP39 "Akkermansia muciniphila strain GP39 is a Gram-negative, anaerobic bacterium characterized by its cocci shape and tendency to exist in pairs or as single cells. This strain thrives optimally at 37.0°C, aligning with the physiological temperature of the human body, which suggests its adaptation to a host-associated environment. ↵↵A. muciniphila is known to inhabit the mucosal layer of the gastrointestinal tract, where it plays a significant role in mucin degradation and contributes to the maintenance of gut homeostasis. The anaerobic nature of this strain indicates that it relies on fermentation processes for energy production, underscoring its specialized niche in oxygen-limited environments typical of the gut microbiome.↵↵The presence of A. muciniphila in the human gut is associated with various health benefits, including potential roles in metabolic regulation and immune modulation. Its ability to metabolize mucin, a glycoprotein component of mucus, suggests that A. muciniphila may help in the modulation of gut barrier function and the prevention of intestinal inflammation. The unique ecological role of this strain emphasizes its importance in maintaining gut health and possibly influencing host metabolic pathways, highlighting the intricate interactions between gut microbiota and host physiology." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 PJKP00000000.1 Bac0018004 Akkermansia muciniphila strain GP36 "Akkermansia muciniphila strain GP36 is a Gram-negative, anaerobic coccus known for its distinct cellular arrangement, typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, indicating its adaptation to the warm-blooded hosts in which it resides. As a host-associated microbe, Akkermansia muciniphila strain GP36 plays a significant role in the gastrointestinal tract of its hosts, contributing to the maintenance of mucosal health and potentially influencing host metabolism.↵↵The anaerobic nature of this strain suggests it participates in fermentation processes within the gut environment, where it may utilize mucin as a carbon source, aligning with the broader metabolic capabilities of the Akkermansia genus. This metabolic activity is important for maintaining the integrity of the gut barrier and may aid in modulating the host's immune response.↵↵Understanding the specific ecological role of Akkermansia muciniphila strain GP36 could provide insights into its contributions to gut homeostasis and the potential implications for host health. The presence of this strain in the microbiome may reflect a complex interplay between microbial communities and host physiology, offering avenues for further research into its beneficial effects on metabolic diseases and gut health." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 PJKR00000000.1 Bac0018005 Akkermansia muciniphila strain GP23 "Akkermansia muciniphila strain GP23 is a Gram-negative, anaerobic bacterium characterized by its cocci shape and a tendency to exist in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating a potential adaptation to the warm environment of the host organism, likely the human gut. ↵↵As a host-associated microbe, Akkermansia muciniphila strain GP23 plays a significant role in the intestinal microbiome, where it contributes to the degradation of mucin, a glycoprotein that forms a critical component of the intestinal mucus layer. This mucin-degrading capability is essential for maintaining gut health, as it may influence the integrity of the mucosal barrier and modulate interactions between the host and its microbiota.↵↵The anaerobic metabolism of strain GP23 suggests that it resides in environments devoid of oxygen, which is typical for many gut bacteria. This ecological niche allows it to participate in various metabolic processes, potentially impacting nutrient absorption and immune function. ↵↵Overall, the unique adaptation of Akkermansia muciniphila strain GP23 to anaerobic conditions and its ability to utilize mucin not only highlights its ecological role in the gut but also underscores its potential significance in promoting host health and homeostasis." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila Negative Cocci No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 239935 PJLE00000000.1 Bac0018006 Pseudomonas sp. YY-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. YY-1 2058659 PJLX00000000.1 Bac0018007 Arthrobacter sp. AFG7.2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. AFG7.2 1688693 PJMB00000000.1 Bac0018008 Arthrobacter sp. AFG20 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. AFG20 1688671 PJMC00000000.1 Bac0018009 Streptomyces sp. 5112.2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 5112.2 1938848 PJNA00000000.1 Bac0018010 Bacillus sp. BI3 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. BI3 2060113 PJOQ00000000.1 Bac0018011 Pseudomonas sp. FFUP_PS_41 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FFUP_PS_41 2060417 PJQP00000000.1 Bac0018012 Cupriavidus pauculus strain UM1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus pauculus 82633 PJRP00000000.1 Bac0018013 Caulobacter flavus strain CGMCC1 15093 CFHF57 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter flavus 1679497 PJRQ00000000.1 Bac0018014 Caulobacter zeae strain 410 SGCZ15 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter zeae 2055137 PJRS00000000.1 Bac0018015 Enterococcus faecium strain EN886 "Enterococcus faecium strain EN886 is a Gram-positive cocci that exhibits facultative anaerobic growth, allowing it to thrive in varying oxygen conditions. This strain is notably isolated from fermented mare milk, indicating its potential role in dairy fermentation processes. The metabolic versatility of E. faecium strain EN886, characteristic of facultative anaerobes, suggests that it can adapt to both aerobic and anaerobic environments, which is advantageous in the dynamic conditions often found in fermented food systems.↵↵As a member of the Enterococcus genus, E. faecium strains are known for their resilience and ability to survive in harsh conditions, which may contribute to the flavor and preservation qualities of fermented products. The association of this strain with fermented mare milk not only highlights its potential use in traditional fermentation practices but also points to its ability to interact with specific microbial communities inherent in dairy ecosystems.↵↵The presence of E. faecium strain EN886 in such a niche habitat may provide insights into the microbial dynamics of fermentation and the biochemical transformations that enhance the flavor and safety of fermented dairy products. Understanding its role could also pave the way for its application in improving fermentation processes or developing starter cultures that harness its unique traits." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 PJUX00000000.1 Bac0018016 Enterococcus faecalis strain EN273 "Enterococcus faecalis strain EN273 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism. As a chemoorganotroph, this strain utilizes organic compounds as energy sources, allowing it to adapt to a variety of environments. The ability to grow in both aerobic and anaerobic conditions suggests a versatile metabolic capacity, which is advantageous in diverse habitats.↵↵This strain's Gram-positive nature is characterized by a thick peptidoglycan layer, contributing to its resilience in fluctuating environments. Enterococcus faecalis, including strain EN273, is found in a range of habitats, from soil and water to the gastrointestinal tracts of humans and animals. This broad ecological distribution may reflect its adaptive strategies for survival and proliferation in varying conditions.↵↵The facultative anaerobic lifestyle of E. faecalis strain EN273 allows it to exploit diverse niches, potentially influencing microbial community dynamics. Its metabolic flexibility may play a role in nutrient cycling within its habitats, as it is capable of degrading various organic substrates. Further exploration of strain EN273 could provide insights into its ecological interactions, particularly in the context of its coexistence with other microorganisms in complex environments. Understanding such dynamics is crucial for elucidating the role of Enterococcus species in both natural ecosystems and clinical settings." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PJWG00000000.1 Bac0018017 Enterococcus faecalis strain EN531 "Enterococcus faecalis strain EN531 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is classified as a chemoorganotroph, relying on organic compounds as its primary energy source. The optimal growth temperature for E. faecalis EN531 is approximately 37.0°C, which aligns with the typical human body temperature, suggesting a potential association with warm-blooded hosts.↵↵The habitat of E. faecalis strain EN531 is diverse, reflecting the ecological versatility of the Enterococcus genus. These microbes are often found in various environments, including the gastrointestinal tract of humans and animals, as well as in soil and water, indicating their ability to adapt to different ecological niches. This adaptability is crucial for their survival and persistence in fluctuating environments.↵↵Notably, the facultative anaerobic nature of E. faecalis EN531 enables it to participate in various biological processes, including fermentation and the decomposition of organic matter. This ability to utilize different metabolic pathways may contribute to its ecological success in both natural and anthropogenic habitats. Understanding the traits of E. faecalis EN531 can provide insights into its role in microbial communities and its potential interactions with other microorganisms in complex ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PJWX00000000.1 Bac0018018 Enterococcus faecalis strain EN363 "Enterococcus faecalis strain EN363 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism, utilizing chemoorganotrophic pathways for energy production. This strain thrives optimally at a temperature of 37.0 °C, which is indicative of its adaptation to warm-blooded hosts, although it can also be found in a variety of habitats, suggesting a degree of ecological versatility. ↵↵As a member of the Enterococcus genus, E. faecalis is known for its resilience in diverse environments, including the gastrointestinal tracts of humans and animals, as well as in soil and water systems. The facultative anaerobic nature of this strain allows it to survive in both aerobic and anaerobic conditions, contributing to its widespread distribution and potential for persistence in various ecological niches.↵↵Understanding the metabolic capabilities and environmental adaptability of E. faecalis strain EN363 can provide insights into its role in microbial communities, particularly in terms of nutrient cycling and interactions with other microbial inhabitants. Its ability to thrive in multiple habitats may also reflect its evolutionary strategies for survival, underscoring the importance of studying this strain in the context of both microbial ecology and potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PJXD00000000.1 Bac0018019 Enterococcus faecalis strain EN32 "Enterococcus faecalis strain EN32 is a Gram-positive coccus that functions as a chemoorganotroph, utilizing organic compounds for energy. This strain does not form spores and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for E. faecalis EN32 is 37.0°C, which aligns with the typical physiological conditions of mammalian hosts. ↵↵E. faecalis is known for its ability to inhabit a variety of ecological niches, suggesting a versatile adaptability that may contribute to its persistence in diverse habitats. This adaptability is particularly significant in environments that fluctuate between aerobic and anaerobic conditions, reflecting the strain's facultative anaerobic capability. The presence of E. faecalis in multiple habitats underscores its ecological resilience and potential roles in various microbial communities. ↵↵Understanding the traits of Enterococcus faecalis strain EN32 can provide insights into its ecological interactions and metabolic processes, highlighting its role in nutrient cycling and microbial dynamics within its environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PJXF00000000.1 Bac0018020 Enterococcus faecalis strain EN258 "Enterococcus faecalis strain EN258 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 37.0 °C. As a facultative anaerobe, it exhibits versatility in its oxygen requirements, allowing it to survive and grow in both aerobic and anaerobic environments. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds as a source of energy.↵↵E. faecalis is commonly found in various habitats, suggesting its ability to adapt to diverse ecological niches. This adaptability may contribute to its persistence in different environments, including the gastrointestinal tracts of humans and other animals, as well as in soil and water sources. The presence of E. faecalis in multiple habitats underscores its ecological significance and potential role in nutrient cycling.↵↵The unique metabolic characteristics of strain EN258, combined with its growth adaptability, suggest that it may play a role in complex microbial communities, particularly in environments where organic matter is abundant. Further exploration of its ecological interactions could provide insights into its contributions to microbial diversity and ecosystem function." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PJXG00000000.1 Bac0018021 Enterococcus faecalis strain EN209 "Enterococcus faecalis strain EN209 is a Gram-positive cocci classified within the Enterococcus genus, exhibiting a facultative anaerobic metabolism. This strain is nonsporulating and thrives optimally at a temperature of 37.0°C, which is consistent with the human body temperature, suggesting its potential association with warm-blooded hosts or environments that mirror such conditions. As a chemoorganotroph, E. faecalis EN209 derives its energy from organic compounds, allowing it to inhabit a variety of ecological niches, which may include both aerobic and anaerobic conditions due to its facultative anaerobic nature. ↵↵The adaptability of E. faecalis EN209 to different habitats is noteworthy, as it can survive in diverse environments, ranging from the intestinal tracts of mammals to various man-made surfaces. This versatility underscores its potential role in microbial communities, where it may contribute to nutrient cycling or interact with other microbial species. Understanding the ecological dynamics of E. faecalis EN209 can provide insight into its functional contributions to both natural ecosystems and human-associated environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PJXK00000000.1 Bac0018022 Chimaeribacter californicus strain 2015-Iso6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Chimaeribacter Chimaeribacter californicus 2060067 PJZF00000000.1 Bac0018023 Streptomyces cinnamoneus strain DSM 41675 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cinnamoneus 53446 PKFQ00000000.1 Bac0018024 Hydrogenovibrio sp. SC-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Hydrogenovibrio Hydrogenovibrio sp. SC-1 2065820 PKGB00000000.1 Bac0018025 Ligilactobacillus agilis strain 268A Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus agilis 1601 PKGI00000000.1 Bac0018026 Bifidobacterium longum strain UMB0788 "Bifidobacterium longum strain UMB0788 is a Gram-positive, non-sporulating rod-shaped bacterium that typically exists in host-associated environments. This strain exhibits a unique cell arrangement, occurring in clusters, pairs, and singles, which may play a role in its interactions within the host microbiome. Optimal growth of B. longum UMB0788 occurs at a temperature of 37.0°C, reflecting its adaptation to the warm conditions of the mammalian gastrointestinal tract.↵↵As an anaerobe, B. longum UMB0788 thrives in low-oxygen environments, which is characteristic of many beneficial gut microbiota. Its anaerobic nature suggests a metabolic adaptation that facilitates its survival and function within the complex ecosystem of the gut, where it may contribute to the maintenance of gut health and homeostasis. The strain's non-sporulating trait indicates that it relies on stable environmental conditions for survival, which is typical for many members of the Bifidobacterium genus.↵↵This microbe's presence in host-associated habitats underscores its potential role in symbiotic relationships, possibly influencing host immune responses and nutrient absorption. Further investigation into the specific contributions of B. longum strain UMB0788 to gut microbiota dynamics may provide valuable insights into its role in promoting host health and preventing dysbiosis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 PKGP00000000.1 Bac0018027 Aerococcus loyolae strain UMB0126 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus loyolae 2976809 PKGX00000000.1 Bac0018028 Aerococcus christensenii strain UMB0844 "Aerococcus christensenii strain UMB0844 is a Gram-positive, non-sporulating coccus that resides in the gut of its host. This strain exhibits the characteristic morphology of cocci, which are spherical-shaped bacteria typically associated with a range of ecological niches. The identification of strain UMB0844 as a member of the Aerococcus genus suggests its potential role in the complex microbial communities of the gut microbiome.↵↵The non-sporulating nature of Aerococcus christensenii strain UMB0844 indicates that it relies on other survival strategies within the gut environment, such as metabolic adaptation and interspecies interactions, rather than forming spores to endure unfavorable conditions. The gut habitat is a dynamic ecosystem where microbial interactions can significantly influence host health, nutrient absorption, and immune responses. ↵↵Given its presence in the gastrointestinal tract, Aerococcus christensenii strain UMB0844 may contribute to the maintenance of gut homeostasis and could play a role in the fermentation of dietary fibers, potentially influencing the production of short-chain fatty acids and other metabolites beneficial to host physiology. Understanding the specific functions and interactions of this strain within the gut microbiome could provide insights into its ecological significance and potential applications in probiotics or gut health research." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus christensenii positive Cocci No 1 Mesophilic Host gut Nonsporulating 87541 PKGZ00000000.1 Bac0018029 Actinomyces urogenitalis strain UMB0319 "Actinomyces urogenitalis strain UMB0319 is a Gram-positive, facultative anaerobic bacterium. This organism is characterized by its ability to thrive in both aerobic and anaerobic environments, suggesting a metabolic flexibility that may allow it to adapt to varying oxygen levels in its ecological niche. While information on the strain's pathogenicity, specific ecological roles, or detailed taxonomy is not available, its classification within the genus Actinomyces indicates potential associations with mucosal surfaces in the urogenital tract.↵↵The Gram-positive nature of A. urogenitalis strain UMB0319 signifies the presence of a thick peptidoglycan layer in its cell wall, which is a hallmark of this bacterial group. This structural feature may influence its interactions with host tissues as well as its susceptibility to certain antibiotics. The facultative anaerobic metabolism implies that this strain can utilize both fermentation and aerobic respiration, potentially providing it with a competitive advantage in environments where oxygen levels fluctuate.↵↵While the specific ecological role of A. urogenitalis strain UMB0319 remains to be elucidated, its capacity to exist in diverse oxygen conditions may play a significant role in microbial community dynamics, particularly in the urogenital microbiome where it could interact with other microbial species. Understanding its metabolic pathways and interactions could provide insights into the maintenance of microbial balance and health in this specific environment." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces urogenitalis Positive Facultative anaerobe 103621 PKHA00000000.1 Bac0018030 Gardnerella leopoldii strain UMB0913 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella leopoldii 2792978 PKHB00000000.1 Bac0018031 Gardnerella vaginalis strain UMB0061 "Gardnerella vaginalis strain UMB0061 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, highlighting its adaptation to nutrient-rich environments typically found in host-associated habitats. ↵↵This specific strain of Gardnerella vaginalis is known for its association with the human host, where it plays a role in the complex microbial communities of the vaginal microbiome. The anaerobic nature of strain UMB0061 suggests that it may contribute to the maintenance of a stable environment within this niche, potentially influencing the overall microbial balance and health of the host. ↵↵Understanding the traits of Gardnerella vaginalis strain UMB0061 can provide insights into its ecological role and interactions within the vaginal microbiome, particularly in the context of health and disease. Further research into this strain may elucidate its contributions to host-associated microbial ecosystems and its potential implications for vaginal health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 PKHD00000000.1 Bac0018032 Corynebacterium riegelii strain UMB0243 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium riegelii 156976 PKHN00000000.1 Bac0018033 Corynebacterium coyleae strain UMB0989 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium coyleae 53374 PKHP00000000.1 Bac0018034 Corynebacterium coyleae strain UMB0147 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium coyleae 53374 PKHQ00000000.1 Bac0018035 Streptococcus salivarius strain UMB0051 "Streptococcus salivarius strain UMB0051 is a Gram-positive coccus that typically forms chains or pairs. This strain is nonsporulating and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. salivarius strain UMB0051 is likely to be found in association with various host organisms, particularly in the oral cavity, where members of the Streptococcus genus are known to play a significant role in microbial communities.↵↵The ability of S. salivarius strain UMB0051 to survive in a host-associated environment suggests its potential contribution to the maintenance of oral health and its involvement in the complex interactions within the oral microbiome. Its facultative anaerobic nature may enable it to adapt to varying oxygen levels in the oral cavity, which can fluctuate due to factors such as diet and salivary flow. This adaptability may enhance its competitive advantage over other microbial species in the niche it occupies. Further research could elucidate the specific roles of S. salivarius strain UMB0051 in microbial dynamics and its potential beneficial effects on host health, particularly in relation to oral and systemic diseases." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 PKIA00000000.1 Bac0018036 Streptococcus parasanguinis strain UMB0216 "Streptococcus parasanguinis strain UMB0216 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a trait often advantageous for survival in host-associated habitats. ↵↵As a member of the Streptococcus genus, S. parasanguinis is likely involved in various biological interactions within its ecological niche, including potential roles in oral and systemic microbiomes. Its facultative anaerobic nature suggests that it can adapt to fluctuating oxygen levels, which may be particularly relevant in the complex environments of host-associated niches, such as the human oral cavity or other mucosal surfaces. ↵↵The presence of S. parasanguinis in host-associated environments highlights its potential contributions to microbial community dynamics and host health. Understanding its physiological traits and ecological roles could provide insights into the balance of microbial populations in these habitats and their implications for health and disease states." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1318 PKIC00000000.1 Bac0018037 Streptococcus mitis strain UMB1341 "Streptococcus mitis strain UMB1341 is a Gram-positive, non-sporulating coccus that typically exhibits a chains-pairs arrangement. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. As a member of the Streptococcus genus, S. mitis strain UMB1341 is host-associated, suggesting a relationship with a specific host organism, which may influence its ecological interactions and growth conditions.↵↵The coccoid shape and characteristic arrangement in chains and pairs are consistent with the morphology observed in many streptococci, which may play a role in its colonization and persistence within host tissues. The facultative anaerobic nature of this strain likely allows it to adapt to various niches within the host, utilizing available oxygen when it is present and switching to fermentation or other anaerobic metabolic pathways in its absence.↵↵Understanding the traits of Streptococcus mitis strain UMB1341 can provide insights into its ecological role within the host microbiome, particularly in relation to its potential contributions to the host's health, such as in oral or respiratory environments. Additionally, the adaptability of this strain in varying oxygen conditions may reflect its evolutionary strategies in diverse microbial communities, underscoring the dynamic interactions that occur within host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 PKIE00000000.1 Bac0018038 Streptococcus oralis subsp. dentisani strain UMB0008 "Streptococcus oralis subsp. dentisani strain UMB0008 is a Gram-positive bacterium characterized by its cocci shape and tendency to form pairs and chains. This strain is host-associated, indicating its presence in a biological context that typically involves a host organism, likely within the oral cavity where it may contribute to the complex microbial community. As a facultative anaerobe, S. oralis subsp. dentisani strain UMB0008 can thrive in both aerobic and anaerobic environments, which is particularly advantageous in the dynamic conditions of the oral microbiome.↵↵The ability of this strain to adapt to varying oxygen levels suggests a versatile metabolic capacity, allowing it to engage in various biochemical pathways depending on the availability of oxygen. This adaptability may play a role in its survival and persistence within the host, as well as its interactions with other microbial species. Understanding the specific interactions and roles of S. oralis subsp. dentisani strain UMB0008 within the oral microbiome could provide insights into its contributions to oral health and disease, highlighting the importance of microbial diversity in maintaining ecological balance within host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains 1458253 PKIF00000000.1 Bac0018039 Lactobacillus crispatus strain UMB0085 "Lactobacillus crispatus strain UMB0085 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. L. crispatus strain UMB0085 has an optimal growth temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat.↵↵As a member of the Lactobacillus genus, this strain is likely involved in the fermentation processes associated with various host environments, contributing to the maintenance of microbial balance. The ability of L. crispatus strain UMB0085 to grow in fluctuating oxygen levels indicates its potential adaptability within diverse ecological niches, particularly those within the gastrointestinal tract or other host tissues. ↵↵This adaptability may play a crucial role in its ecological interactions, including the potential modulation of host immune responses and overall microbiome health. Understanding the specific contributions of L. crispatus strain UMB0085 in host-associated settings could provide insights into its role in symbiotic relationships, metabolic functions, and the development of probiotics targeting specific health outcomes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 PKIW00000000.1 Bac0018040 Kytococcus schroeteri strain UMB1298 Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus schroeteri aerobic 138300 PKIZ00000000.1 Bac0018041 Gordonia terrae strain UMB0777 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia terrae 2055 PKJC00000000.1 Bac0018042 Gardnerella vaginalis strain UMB0775 "Gardnerella vaginalis strain UMB0775 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, which aligns with its habitat as a host-associated microbe, frequently found in human microbiota. ↵↵The anaerobic nature of G. vaginalis UMB0775 suggests its adaptation to environments with limited oxygen availability, such as the human urogenital tract, where it may play a role in the complex interplay of microbial communities. This adaptation may also influence its interactions with other microbial species, contributing to the overall homeostasis of the host environment. ↵↵Importantly, the presence of Gardnerella vaginalis in human hosts has been associated with various health conditions, although the specific roles and mechanisms of this strain remain to be thoroughly elucidated. Understanding the ecological role of G. vaginalis strain UMB0775 could provide insights into its contributions to both normal and dysbiotic states within the urogenital microbiome, underscoring its relevance in microbiological and clinical research." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Gardnerella Gardnerella vaginalis Positive Rod No 1 1 Anaerobic 37 Chemoheterotroph Mesophilic HostAssociated Free living Nonsporulating Human 2702 PKJG00000000.1 Bac0018043 Neisseria sicca strain UMB0321 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria sicca 490 PKJO00000000.1 Bac0018044 Neisseria perflava strain UMB0210 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria perflava 33053 PKJP00000000.1 Bac0018045 Micrococcus luteus strain UMB0867 "Micrococcus luteus strain UMB0867 is a Gram-positive, aerobic cocci that typically exhibits a tetrad arrangement. This strain is a member of the Micrococcaceae family and is known for its ability to thrive in various habitats, indicating a certain ecological versatility. The tetrad arrangement of this microbe is a distinctive morphological characteristic that aids in its identification and classification within the genus Micrococcus.↵↵As an aerobe, Micrococcus luteus strain UMB0867 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen availability varies. The adaptability of this strain to multiple habitats suggests that it may play a role in nutrient cycling and could be involved in biogeochemical processes. Its presence in diverse environments highlights the potential for beneficial interactions with other microorganisms and its contribution to the microbiome of those habitats.↵↵Overall, the traits of Micrococcus luteus strain UMB0867 position it as a resilient microbial entity that may serve important ecological functions, particularly in aerobic environments where it can utilize oxygen to support its growth and survival." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus Positive Cocci No 1 1 Aerobe Mesophilic Multiple Free living Tetrads Human 1270 PKJV00000000.1 Bac0018046 Lactobacillus jensenii strain UMB0077 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus jensenii vagina 109790 PKJY00000000.1 Bac0018047 Lactobacillus delbrueckii strain UMB0003 "Lactobacillus delbrueckii strain UMB0003 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains and exhibits facultative anaerobic growth. This strain thrives optimally at a temperature of 42.0°C, suggesting a preference for warmer environments compared to many other lactobacilli. L. delbrueckii is known to inhabit a variety of habitats, which may include dairy products and fermented foods, contributing to its relevance in food microbiology and fermentation processes.↵↵The facultative anaerobic nature of strain UMB0003 allows it to adapt to varying oxygen levels, potentially enhancing its survival and metabolic versatility in diverse ecological niches. This adaptability is crucial for its role in fermentation, where it can utilize both aerobic and anaerobic metabolic pathways depending on the environmental conditions. ↵↵Additionally, the chain arrangement of the cells may facilitate cooperative behaviors in biofilm formation or in the fermentation process, enabling efficient substrate utilization and metabolic exchange among microbial communities. Such traits underscore the ecological significance of L. delbrueckii strain UMB0003 in environments where temperature and oxygen levels fluctuate, revealing its potential contributions to microbial diversity and ecosystem functioning." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1584 PKKE00000000.1 Bac0018048 Winkia neuii strain UMB0402 "Winkia neuii strain UMB0402 is a Gram-positive, rod-shaped bacterium characterized by its microaerophilic nature, indicating its requirement for reduced oxygen levels for optimal growth. This strain is non-spore-forming, which distinguishes it from other members of the bacterial domain that possess the ability to produce spores as a means of survival in adverse conditions. ↵↵The microaerophilic requirement suggests that Winkia neuii strain UMB0402 may thrive in environments where oxygen levels are lower than atmospheric concentrations, potentially indicating a niche in specific ecological contexts such as the gastrointestinal tracts of certain organisms or in environments rich in organic material where oxygen is limited. ↵↵Understanding the growth conditions and physiological traits of Winkia neuii strain UMB0402 could provide insights into its potential roles in microbial communities, particularly in relation to nutrient cycling or symbiotic relationships within its habitat. Further exploration of its metabolic capabilities and interactions with other microorganisms may reveal its ecological significance and contribution to the dynamics of the environments it inhabits." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Winkia Winkia neuii Gram-positive rod non-motile microaerophile non-spore-forming 33007 PKKO00000000.1 Bac0018049 Actinomyces naeslundii strain UMB0181 "Actinomyces naeslundii strain UMB0181 is a Gram-positive bacterium classified within the Actinomyces genus, notable for its facultative anaerobic metabolism. This strain predominantly inhabits the submucosal sulcus, an area often associated with the oral cavity microbiota. The presence of A. naeslundii in this specific habitat suggests its potential role in maintaining the microbial balance and health of oral tissues. ↵↵As a facultative anaerobe, A. naeslundii strain UMB0181 can thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels encountered in the submucosal sulcus. This adaptability may contribute to its survival and persistence in the complex oral microbiome, where oxygen availability can fluctuate due to various physiological conditions, such as respiration and oral hygiene practices.↵↵The unique ecological niche occupied by A. naeslundii strain UMB0181 may also provide insights into its interactions with other microbial species and its contributions to the overall dynamics of the oral microbiota. Understanding the specific roles of this strain in oral health or disease could inform future research on microbial communities and their influence on human health. The adaptability and habitat specificity of A. naeslundii strain UMB0181 underscore the intricate relationships within the oral ecosystem and the importance of studying individual strains to elucidate their functions in complex microbial communities." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces naeslundii Positive Facultative anaerobe submucosal sulcus 1655 PKKP00000000.1 Bac0018050 Pseudomonas sp. QC2 QCBJ29 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. QC2 2065822 PKKS00000000.1 Bac0018051 Bacillus sp. UMB0728 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. UMB0728 2066052 PKLA00000000.1 Bac0018052 Pseudomonas baetica strain a390 "Pseudomonas baetica strain A390 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, specifically within soil habitats. This strain exhibits the characteristic features of the Pseudomonas genus, including metabolic versatility and the capacity to utilize a wide range of organic compounds as carbon sources. The aerobic nature of Pseudomonas baetica strain A390 suggests that it plays a significant role in soil respiration processes, contributing to the degradation of organic matter and the cycling of nutrients within the ecosystem. ↵↵The presence of this strain in soil indicates its potential involvement in various biogeochemical processes, such as nitrogen fixation and the breakdown of pollutants. The adaptability of Pseudomonas species, including P. baetica strain A390, to diverse environmental conditions highlights their importance in ecological balance and their potential utility in bioremediation efforts. Further research on this strain could elucidate its specific metabolic pathways and interactions with other soil microorganisms, thereby enhancing our understanding of its ecological role and potential applications in sustainable agriculture and environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas baetica Gram-negative rod aerobic soil 674054 PKLC00000000.1 Bac0018053 Streptomyces albidoflavus strain FXJ.2339 "Streptomyces albidoflavus strain FXJ.2339 is a Gram-positive bacterium belonging to the genus Streptomyces, known for its filamentous growth and capacity to produce a diverse array of secondary metabolites. As a member of this genus, strain FXJ.2339 exhibits typical characteristics associated with Streptomyces species, including a complex life cycle that involves the formation of spores and a mycelial structure.↵↵The Gram-positive nature of S. albidoflavus strain FXJ.2339 suggests a robust cell wall composition primarily consisting of peptidoglycan, which may contribute to its resilience in various environments. This trait may also influence its interactions with other microorganisms and its ability to thrive in competitive ecological niches.↵↵Streptomyces species are renowned for their role in soil ecology and their ability to degrade organic materials, which is likely relevant for S. albidoflavus strain FXJ.2339 as well. The production of secondary metabolites by this strain may include antibiotics or other bioactive compounds, which could provide ecological advantages such as inhibiting the growth of competing microbes or facilitating nutrient acquisition.↵↵In summary, the filamentous, Gram-positive nature of Streptomyces albidoflavus strain FXJ.2339 underscores its potential significance in soil ecosystems as a decomposer and producer of bioactive substances, thereby influencing microbial community dynamics and nutrient cycling in its habitat." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKLK00000000.1 Bac0018054 Streptomyces albidoflavus strain NBRC 100770 "Streptomyces albidoflavus strain NBRC 100770 is a Gram-positive bacterium belonging to the genus Streptomyces, known for its filamentous growth and production of a variety of bioactive compounds. This strain is characterized by its ability to form a complex mycelial structure, typical of many species within the Streptomyces genus. ↵↵As a member of this diverse group of actinobacteria, S. albidoflavus strain NBRC 100770 is likely to exhibit significant metabolic versatility, which may contribute to its ecological niche in soil environments. The Gram-positive nature of this strain suggests a robust cell wall structure, primarily composed of peptidoglycan, which may confer resilience to environmental stresses and influence its interactions with other soil microorganisms.↵↵Furthermore, Streptomyces species are renowned for their role in the natural production of secondary metabolites, including antibiotics and enzymes that can degrade complex organic materials. While specific metabolic pathways and products for S. albidoflavus strain NBRC 100770 have not been detailed here, the potential for this strain to contribute to biogeochemical cycles in its habitat is considerable. In summary, the ecological role of Streptomyces albidoflavus strain NBRC 100770 may extend beyond its metabolic capabilities, potentially influencing microbial community dynamics and nutrient cycling in terrestrial ecosystems." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKLL00000000.1 Bac0018055 Streptomyces albidoflavus strain CGMCC 4.1677 "Streptomyces albidoflavus strain CGMCC 4.1677 is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its ability to produce a wide range of bioactive compounds. This strain is characterized by its filamentous growth form, typical of many members of the Streptomyces genus, which contributes to its ecological role in soil environments. Streptomyces species, including S. albidoflavus, are known for their complex life cycle and ability to form spores, which enables them to thrive in various habitats and resist adverse conditions.↵↵The Gram-positive nature of S. albidoflavus indicates a thick peptidoglycan layer in its cell wall, which is characteristic of this group of bacteria and contributes to their structural integrity. This trait is often associated with the production of secondary metabolites, including antibiotics and other antimicrobial compounds, which play a significant role in their ecological interactions with other microorganisms.↵↵Research on S. albidoflavus strain CGMCC 4.1677 may yield insights into its potential applications in biotechnology, particularly in the field of natural product discovery. Given the historical significance of Streptomyces in pharmaceutical development, this strain could be a valuable resource for isolating novel compounds with therapeutic potential. Its adaptation strategies and metabolic capabilities further suggest that S. albidoflavus may occupy a unique niche within the microbial community, contributing to soil health and nutrient cycling." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKLM00000000.1 Bac0018056 Streptomyces albidoflavus strain CGMCC 4.1681 "Streptomyces albidoflavus strain CGMCC 4.1681 is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its role in natural product biosynthesis and soil ecology. This strain exhibits the characteristic filamentous morphology typical of the genus, contributing to its ecological niche in terrestrial environments where it plays a role in the decomposition of organic matter. ↵↵The Gram-positive nature of S. albidoflavus indicates the presence of a thick peptidoglycan layer in its cell wall, a trait that is significant for its structural integrity and resistance to certain environmental stresses. This feature may also influence its interactions with other soil microorganisms and contribute to its potential utility in biotechnological applications, particularly in the production of antibiotics and other secondary metabolites.↵↵Given the ecological context of Streptomyces species, it is plausible to consider S. albidoflavus strain CGMCC 4.1681 as a key player in nutrient cycling within soil ecosystems. Its ability to degrade complex organic compounds not only aids in soil fertility but may also influence microbial community dynamics, thereby enhancing biodiversity and ecological resilience. Further investigation into the metabolic pathways and secondary metabolite production of this strain may reveal novel compounds with potential applications in agriculture or medicine." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKLR00000000.1 Bac0018057 Streptomyces albidoflavus strain D62 "Streptomyces albidoflavus strain D62 is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its role in soil ecosystems and its potential in natural product biosynthesis. This strain exhibits the characteristic filamentous growth form typical of the Streptomyces genus, which contributes to its ecological versatility and ability to degrade complex organic materials in the environment. ↵↵The Gram-positive nature of S. albidoflavus strain D62 implies a thick peptidoglycan layer in its cell wall, which may confer advantages in resisting environmental stresses. Strains within this genus are often studied for their capacity to produce a wide array of bioactive secondary metabolites, including antibiotics and antifungal compounds, although specific metabolic capabilities of strain D62 are not detailed in the provided traits.↵↵The ecological role of S. albidoflavus strain D62 may extend beyond nutrient recycling; its potential to produce antimicrobial substances could influence microbial community dynamics in its habitat. This ability is particularly significant in soil environments, where competition for resources among microbial populations is intense. By producing compounds that inhibit the growth of competing microbes, S. albidoflavus strain D62 may contribute to the maintenance of microbial diversity and stability within its ecological niche, showcasing the intricate relationships that define soil microbiomes." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKLS00000000.1 Bac0018058 Kineobactrum sediminis strain F02 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Kineobactrum Kineobactrum sediminis 1905677 PKLZ00000000.1 Bac0018059 Dysgonamonadaceae bacterium strain XHS2771 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Dysgonamonadaceae bacterium 2065189 PKMK00000000.1 Bac0018060 Enterococcus faecalis strain EN788 "Enterococcus faecalis strain EN788 is a Gram-positive, non-sporulating cocci that exhibits facultative anaerobic metabolism, utilizing organic compounds as a chemoorganotroph. This strain thrives optimally at a temperature of 37°C, which is consistent with the body temperature of warm-blooded hosts, suggesting its potential association with mammalian environments. ↵↵Enterococcus faecalis is known for its ability to inhabit diverse ecological niches, which may include the gastrointestinal tracts of humans and animals, as well as various environmental settings. Its facultative anaerobic nature allows it to adapt to fluctuations in oxygen levels, enhancing its survival and competitiveness in varied habitats. ↵↵The metabolic versatility of strain EN788, coupled with its adaptability, may contribute to its persistence in both clinical and environmental contexts. Such traits underscore the importance of Enterococcus faecalis in microbial ecosystems, where it may play a role in nutrient cycling and interactions with other microbial communities. Understanding the ecological dynamics of strain EN788 could provide insights into its potential applications in biotechnology and its impact on health and disease in host organisms." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 PKMN00000000.1 Bac0018061 Streptomyces sp. SCA2-2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SCA2-2 1563677 PKMX00000000.1 Bac0018062 Streptomyces albidoflavus strain CR46 "Streptomyces albidoflavus strain CR46 is a Gram-positive bacterium characterized by its filamentous morphology and complex life cycle, which is typical of the Streptomyces genus. This strain is notable for its ability to produce a variety of bioactive secondary metabolites, which are of significant interest for their potential applications in pharmaceuticals and agriculture. Streptomyces species, including S. albidoflavus, are well-documented for their role in soil ecosystems, where they contribute to the decomposition of organic matter and the cycling of nutrients.↵↵The Gram-positive nature of S. albidoflavus strain CR46 suggests a robust cell wall structure, primarily composed of peptidoglycan, which is indicative of its resilience in diverse environmental conditions. This characteristic may also facilitate the organism's interactions with other microbial communities in the soil, potentially influencing soil health and fertility.↵↵The ecological role of S. albidoflavus strain CR46 extends beyond its contributions to nutrient cycling; its secondary metabolites may play a role in microbial competition and defense mechanisms, allowing it to thrive in a competitive environment. Overall, the traits of S. albidoflavus strain CR46 highlight its significance not only as a source of natural products but also as an integral component of soil microbial diversity and function." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKNU00000000.1 Bac0018063 Streptomyces albidoflavus strain Ma24 "Streptomyces albidoflavus strain Ma24 is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its complex life cycle and ability to produce a variety of bioactive compounds. This strain exhibits the characteristic filamentous morphology typical of the Streptomyces genus, often forming branched hyphae that can contribute to its ecological roles in soil environments.↵↵As a member of the actinobacteria, S. albidoflavus strain Ma24 is expected to possess the metabolic versatility associated with this group, which enables it to degrade a wide range of organic materials. These traits are crucial for nutrient cycling in terrestrial ecosystems, where Streptomyces species play a significant role in the decomposition of organic matter. The ability of this strain to produce secondary metabolites may also suggest potential applications in biotechnology, particularly in the discovery of novel antibiotics or other bioactive compounds.↵↵Further investigation into the specific metabolic pathways and biosynthetic capabilities of S. albidoflavus strain Ma24 could reveal insights into its ecological functions and interactions within its environment. Understanding these traits is essential for harnessing the beneficial aspects of this microbe in agricultural and pharmaceutical applications, highlighting the importance of Streptomyces species in maintaining soil health and promoting plant growth." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKNW00000000.1 Bac0018064 Streptomyces albidoflavus strain CR33 "Streptomyces albidoflavus strain CR33 is a Gram-positive bacterium belonging to the genus Streptomyces, which is known for its filamentous structure and complex life cycle. This strain exhibits the typical morphological characteristics associated with the Streptomyces genus, including the production of a mycelium and the formation of spores. As a member of this group, S. albidoflavus strain CR33 is likely to produce a variety of secondary metabolites, which are often of interest for their potential applications in pharmaceuticals and agriculture.↵↵The Gram-positive nature of this strain suggests a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in various environmental conditions. Although specific biochemical pathways and metabolic capabilities of S. albidoflavus strain CR33 are not detailed here, members of the Streptomyces genus are renowned for their ability to degrade complex organic materials, indicating a potential role in nutrient cycling within their ecological niches.↵↵Given its filamentous growth and the characteristics associated with Gram-positive bacteria, S. albidoflavus strain CR33 may play a significant role in soil ecosystems, where it could contribute to the decomposition of organic matter and the cycling of nutrients. Further research into this strain could elucidate its specific ecological roles and the unique secondary metabolites it may produce, which could have implications for biotechnological applications and environmental sustainability." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKNX00000000.1 Bac0018065 Streptomyces albidoflavus strain CR10 "Streptomyces albidoflavus strain CR10 is a Gram-positive bacterium known for its filamentous morphology, characteristic of the Streptomyces genus. This strain exhibits the typical features associated with actinobacteria, including the production of a complex secondary metabolome, which may include antibiotics and other bioactive compounds. Streptomyces species, including S. albidoflavus, are well-documented for their role in soil ecology, where they contribute significantly to the decomposition of organic matter and nutrient cycling.↵↵The filamentous growth form of S. albidoflavus strain CR10 allows for extensive surface area, which may enhance its ability to acquire nutrients from the environment. This trait is particularly beneficial in nutrient-limited conditions, where competition with other microorganisms is intense. The ability of S. albidoflavus strain CR10 to produce a variety of metabolites is indicative of its potential role in the natural inhibition of competing microbes, thereby influencing microbial community dynamics in its habitat.↵↵In summary, while the specific ecological roles and interactions of S. albidoflavus strain CR10 require further investigation, its Gram-positive nature and filamentous structure suggest that it plays a significant role in soil ecosystems, potentially impacting both microbial diversity and the overall health of the soil microbiome." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKNY00000000.1 Bac0018066 Streptomyces albidoflavus strain Ma1 "Streptomyces albidoflavus strain Ma1 is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its role in natural product synthesis, particularly antibiotics. This strain exhibits the filamentous morphology characteristic of many Streptomyces species, which typically thrive in soil environments. ↵↵As a member of the Actinobacteria phylum, S. albidoflavus strain Ma1 is presumed to possess a complex secondary metabolite production pathway, which may include the synthesis of bioactive compounds with potential applications in pharmaceuticals and agriculture. The Gram-positive nature of this strain indicates the presence of a thick peptidoglycan layer in its cell wall, which is a hallmark of the genus and contributes to its resistance to certain environmental stresses.↵↵The ecological role of S. albidoflavus strain Ma1 in its natural habitat is likely significant, as members of the Streptomyces genus are known to participate in the decomposition of organic matter and the recycling of nutrients. Their ability to produce a wide array of secondary metabolites allows them to interact with other microorganisms and plants, potentially providing competitive advantages in nutrient-limited environments. This unique trait positions S. albidoflavus strain Ma1 as a potential candidate for further studies aimed at harnessing its biosynthetic capabilities for biotechnological applications." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKOA00000000.1 Bac0018067 Streptomyces albidoflavus strain CR16 "Streptomyces albidoflavus strain CR16 is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its significant role in natural product biosynthesis, particularly antibiotics and other bioactive compounds. As a member of this genus, S. albidoflavus strain CR16 is likely to possess a complex secondary metabolite profile, although specific products have not been detailed in the available data.↵↵The Gram-positive nature of this strain suggests that its cell wall structure consists of a thick peptidoglycan layer, which may confer resistance to certain environmental stresses and play a role in its ecological interactions. Members of the Streptomyces genus are primarily found in soil and decaying organic matter, where they contribute to nutrient cycling through the decomposition of complex organic materials. ↵↵While specific biochemical capabilities and physiological traits of S. albidoflavus strain CR16 are not provided, it is reasonable to infer that it may exhibit traits typical of other Streptomyces species, including the ability to degrade various substrates and produce enzymes that facilitate nutrient acquisition. The ecological significance of S. albidoflavus strain CR16 may lie in its potential contributions to soil health and its role in maintaining microbial diversity within its habitat. Further research into its metabolic capabilities and interactions within microbial communities could provide valuable insights into its ecological functions and contributions to biogeochemical cycles." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKOB00000000.1 Bac0018068 Streptomyces albidoflavus strain CR15 "Streptomyces albidoflavus strain CR15 is a Gram-positive bacterium belonging to the genus Streptomyces, which is renowned for its ability to produce a variety of bioactive secondary metabolites. Characterized by its filamentous structure, this strain exhibits the typical morphological features of the Streptomyces genus, including a branched mycelium. Gram-positive bacteria, such as S. albidoflavus, possess a thick peptidoglycan layer in their cell wall, which is indicative of their structural integrity and potential resilience in various environments.↵↵Streptomyces species are often found in soil and decaying organic matter, where they play a crucial role in nutrient cycling and the decomposition of complex organic compounds. This ecological niche allows them to contribute significantly to soil health and fertility. Moreover, the ability of S. albidoflavus strain CR15 to produce secondary metabolites suggests potential applications in biotechnology and pharmaceuticals, particularly in the development of antibiotics or antifungal agents, although specific production capabilities for this strain are not detailed herein.↵↵Further research on S. albidoflavus strain CR15 may reveal insights into its metabolic pathways and ecological interactions, enhancing our understanding of its role in the soil microbiome and its potential utility in sustainable agriculture and medicine." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKOC00000000.1 Bac0018069 Streptomyces albidoflavus strain CR47 "Streptomyces albidoflavus strain CR47 is a Gram-positive bacterium characterized by its filamentous morphology, typical of the Streptomyces genus. This strain is notable for its ability to produce a diverse array of secondary metabolites, which are significant in various biotechnological applications, including antibiotic production and biocontrol agents. As a member of the Actinobacteria phylum, S. albidoflavus strain CR47 plays a vital role in soil ecosystems, contributing to the decomposition of organic matter and the cycling of nutrients.↵↵The filamentous structure of Streptomyces species allows them to thrive in complex environments, where they can efficiently exploit a variety of substrates. This adaptability is a key feature that facilitates their survival and ecological function, particularly in soil habitats where competition for resources is intense. Furthermore, the secondary metabolites produced by S. albidoflavus strain CR47 may interact with other microorganisms, influencing community dynamics and potentially offering competitive advantages through antimicrobial activity.↵↵In summary, the unique characteristics of Streptomyces albidoflavus strain CR47 highlight its ecological importance and potential for biotechnological exploitation, particularly in the search for novel compounds in drug discovery and agricultural applications. The strain exemplifies the intricate relationships between microbial residents in soil ecosystems, serving as both a decomposer and a source of bioactive compounds that can shape microbial community structures." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus positive 1886 PKOD00000000.1 Bac0018070 Uliginosibacterium sp. TH139 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Uliginosibacterium Uliginosibacterium sp. TH139 2067453 PKRR00000000.1 Bac0018071 Emticicia sp. TH156 Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia sp. TH156 2067454 PKRS00000000.1 Bac0018072 Rhizobium sp. KAs_5_22 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. KAs_5_22 2067668 PKSP00000000.1 Bac0018073 Salinivirgaceae bacterium Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Salinivirgaceae Salinivirgaceae bacterium 2053305 PKTE00000000.1 Bac0018074 Sedimenticola sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Sedimenticolaceae Sedimenticola Sedimenticola sp. 1940285 PKUO00000000.1 Bac0018075 Cohaesibacter celericrescens strain H1304 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Cohaesibacteraceae Cohaesibacter Cohaesibacter celericrescens 2067669 PKUQ00000000.1 Bac0018076 Clostridium sp. chh4-2 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. chh4-2 2067550 PKUU00000000.1 Bac0018077 Pseudoalteromonas aurantia strain S3790 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas aurantia 43654 PNBX00000000.1 Bac0018078 Pseudoalteromonas aurantia strain S3788 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas aurantia 43654 PNBY00000000.1 Bac0018079 Pseudoalteromonas spongiae strain S3655 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas spongiae 298657 PNBZ00000000.1 Bac0018080 Pseudoalteromonas ruthenica strain S3257 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas ruthenica 151081 PNCA00000000.1 Bac0018081 Pseudoalteromonas ruthenica strain S3136 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas ruthenica 151081 PNCD00000000.1 Bac0018082 Pseudoalteromonas ruthenica strain S2898 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas ruthenica 151081 PNCF00000000.1 Bac0018083 Pseudoalteromonas phenolica strain S1189 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas phenolica 161398 PNCM00000000.1 Bac0018084 Pseudoalteromonas sp. S4492 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S4492 579560 PNCP00000000.1 Bac0018085 Pseudoalteromonas sp. S4488 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S4488 579558 PNCR00000000.1 Bac0018086 Pseudoalteromonas sp. S4389 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S4389 579556 PNCS00000000.1 Bac0018087 Pseudoalteromonas sp. S3178 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S3178 579532 PNCW00000000.1 Bac0018088 Pseudoalteromonas sp. S2893 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S2893 579530 PNCY00000000.1 Bac0018089 Pseudoalteromonas sp. S1688 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S1688 579511 PNDE00000000.1 Bac0018090 Pseudoalteromonas sp. S1650 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S1650 579509 PNDF00000000.1 Bac0018091 Pseudoalteromonas sp. S1649 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S1649 579508 PNDG00000000.1 Bac0018092 Pseudoalteromonas sp. S1612 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S1612 579507 PNDH00000000.1 Bac0018093 Pseudoalteromonas sp. S1609 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S1609 579505 PNDJ00000000.1 Bac0018094 Pseudoalteromonas sp. S326 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S326 579533 PNDQ00000000.1 Bac0018095 Pseudoalteromonas sp. S1727 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S1727 2066514 PNDT00000000.1 Bac0018096 Pseudoalteromonas sp. S558 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S558 2066515 PNDU00000000.1 Bac0018097 Pseudoalteromonas sp. S409 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S409 2066518 PNDX00000000.1 Bac0018098 Pseudoalteromonas sp. S407 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S407 2066520 PNDZ00000000.1 Bac0018099 Pseudoalteromonas sp. S186 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. S186 2066521 PNEA00000000.1 Bac0018100 Pseudoalteromonas piscicida strain S2047 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 PNEH00000000.1 Bac0018101 Pseudoalteromonas piscicida strain S1948 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 PNEI00000000.1 Bac0018102 Pseudoalteromonas piscicida strain S1947 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas piscicida 43662 PNEJ00000000.1 Bac0018103 Pseudoalteromonas maricaloris strain S1925 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas maricaloris 184924 PNEK00000000.1 Bac0018104 Burkholderia sp. WAC0059 61 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. WAC0059 2066022 PNEO00000000.1 Bac0018105 Brevibacterium luteolum strain UMB0680 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium luteolum aerobic 199591 PNFZ00000000.1 Bac0018106 Bacillus sp. UMB0899 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. UMB0899 2029108 PNGA00000000.1 Bac0018107 Varibaculum cambriense strain UMB0744 "Varibaculum cambriense strain UMB0744 is a Gram-positive, facultative anaerobic bacterium that exhibits notable metabolic flexibility, allowing it to thrive in varying oxygen conditions. As a member of the Varibaculum genus, this strain is characterized by its ability to adapt to different environmental niches, which may contribute to its ecological versatility. The facultative anaerobic nature of V. cambriense strain UMB0744 suggests that it can utilize both aerobic respiration and fermentation pathways, enabling survival in diverse habitats where oxygen availability fluctuates. ↵↵This adaptability may also imply a capability for utilizing a range of substrates for energy, although specific metabolic pathways have not been elucidated. The Gram-positive nature of the strain indicates the presence of a thick peptidoglycan layer in its cell wall, which may play a role in its resilience to environmental stressors. ↵↵Understanding the traits of Varibaculum cambriense strain UMB0744 provides insights into its potential roles in microbial communities and biogeochemical cycles, particularly in environments where oxygen levels are variable. The strain's adaptability could facilitate its contribution to nutrient cycling and organic matter degradation, underscoring the importance of such bacteria in maintaining ecosystem balance. Further studies could illuminate its specific ecological functions and interactions within its native habitat." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Varibaculum Varibaculum cambriense Positive Facultative anaerobe 184870 PNGC00000000.1 Bac0018108 Streptococcus sp. UMB0029 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. UMB0029 2069308 PNGD00000000.1 Bac0018109 Hoylesella buccalis strain UMB0536 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hoylesella Hoylesella buccalis 28127 PNGJ00000000.1 Bac0018110 Oligella urethralis strain UMB0345 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Oligella Oligella urethralis 90245 PNGK00000000.1 Bac0018111 Streptococcus sp. UMB1385 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. UMB1385 2069309 PNGU00000000.1 Bac0018112 Corynebacterium xerosis strain UMB0908 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium xerosis 1725 PNHF00000000.1 Bac0018113 Corynebacterium tuscaniense strain UMB0792 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuscaniense 302449 PNHG00000000.1 Bac0018114 Corynebacterium aurimucosum strain UMB1300 "Corynebacterium aurimucosum strain UMB1300 is a Gram-positive, rod-shaped bacterium that exists as single cells and exhibits facultative aerobic metabolism. This organism is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. Its habitat is associated with host environments, suggesting a potential role in symbiotic or commensal relationships within specific biological niches.↵↵The Gram-positive nature of C. aurimucosum strain UMB1300 may contribute to its resilience in various environments, particularly those found within host organisms, where it could interact with host immune systems or other microbiota. The ability to grow in the presence of oxygen while also capable of anaerobic respiration allows this strain to adapt to fluctuating oxygen levels, which is common in many host-associated environments.↵↵Understanding the specific ecological roles and interactions of C. aurimucosum strain UMB1300 within its host-associated habitat could provide insights into its potential functions in microbial communities, including nutrient cycling or modulation of host physiology. Further research may elucidate the specific contributions of this strain to the overall microbial ecology of its environment, highlighting its significance in the study of host-associated microbiomes." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium aurimucosum Positive Rod No 1 1 Facultative aerobe Chemoorganotroph Mesophilic HostAssociated Free living Singles 169292 PNHI00000000.1 Bac0018115 Brevibacterium paucivorans strain UMB1301 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium paucivorans aerobic 170994 PNHK00000000.1 Bac0018116 Brachybacterium sp. UMB0905 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium sp. UMB0905 2069310 PNHL00000000.1 Bac0018117 Priestia megaterium strain UMB0500 "Priestia megaterium strain UMB0500 is a Gram-positive, rod-shaped bacterium exhibiting the ability to sporulate, which enables it to withstand unfavorable environmental conditions. This strain can thrive in various habitats, suggesting a remarkable adaptability to diverse ecological niches. As an aerobic organism, P. megaterium strain UMB0500 requires oxygen for its metabolic processes, aligning with the metabolic characteristics of many members of the Bacillaceae family to which it belongs.↵↵The ability to form spores is particularly significant, as it allows the bacterium to survive in environments where nutrients may be limited or where conditions can become hostile. This trait not only highlights the resilience of the species but also suggests potential applications in biotechnological processes, such as biofertilizers or bioremediation, where the organism could be utilized to enhance soil health or degrade pollutants.↵↵Overall, the ecological versatility of Priestia megaterium strain UMB0500, combined with its sporulation capability and aerobic nature, underscores its potential role in various environmental processes, including nutrient cycling and habitat resilience in changing ecosystems." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 PNHN00000000.1 Bac0018118 Anaerococcus hydrogenalis strain UMB0204 "Anaerococcus hydrogenalis strain UMB0204 is a Gram-positive, coccoid bacterium characterized as an obligate anaerobe. This strain exhibits a spherical shape, which is typical of many members of the genus Anaerococcus. As an obligate anaerobe, A. hydrogenalis strain UMB0204 thrives in environments devoid of oxygen, relying on fermentation or other anaerobic metabolic pathways for energy production. ↵↵The Gram-positive nature of this strain suggests a thick peptidoglycan layer in its cell wall, which could contribute to its resilience in anaerobic conditions. The coccoid morphology may also play a role in its ecological niche, potentially influencing its interactions with other microorganisms in anaerobic habitats. ↵↵Given the metabolic requirements and morphology of Anaerococcus hydrogenalis strain UMB0204, it is likely adapted to specific environments such as the gastrointestinal tract of humans or other animals, where anaerobic conditions prevail. This adaptation underscores the diverse strategies employed by bacteria to colonize and thrive in anaerobic ecosystems, highlighting the intricate relationships between microbial species within these specialized niches." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus hydrogenalis Positive Cocci Obligate anaerobe 33029 PNHP00000000.1 Bac0018119 Fervidicoccus fontis Thermoproteati Thermoproteota Thermoprotei Fervidicoccales Fervidicoccaceae Fervidicoccus Fervidicoccus fontis 683846 PNIV00000000.1 Bac0018120 Glutamicibacter arilaitensis strain JB182 SAMN07141175.112 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter arilaitensis 256701 PNQX00000000.1 Bac0018121 Asaia sp. W19 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Asaia Asaia sp. W19 2067395 PNQZ00000000.1 Bac0018122 Billgrantia endophytica strain MC28 590 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia endophytica 2033802 PNRF00000000.1 Bac0018123 Halomonas urumqiensis strain BZ-SZ-XJ27 716 "Halomonas urumqiensis strain BZ-SZ-XJ27 716 is a Gram-negative, rod-shaped bacterium that optimally thrives at a temperature of 37.0°C and requires aerobic conditions for growth. This strain belongs to the genus Halomonas, which is known for its halophilic characteristics, allowing it to inhabit environments with high salinity. The rod shape and aerobic metabolism suggest that H. urumqiensis strain BZ-SZ-XJ27 716 is adapted to environments where oxygen is readily available, enabling efficient energy production through aerobic respiration.↵↵The optimal growth temperature of 37.0°C indicates that this strain may be particularly well-suited for environments that mimic the warm temperatures found in many natural and anthropogenic habitats. Such traits position Halomonas urumqiensis strain BZ-SZ-XJ27 716 as a potential organism of interest for biotechnological applications, particularly those requiring microbial processes in mildly elevated temperature environments. ↵↵Given the known ability of Halomonas species to tolerate high salinity, the unique combination of its temperature preference and aerobic nature suggests that this strain could play a role in biogeochemical cycles in saline, warm environments, possibly contributing to nutrient cycling or bioremediation processes in such habitats. Further investigation into its metabolic capabilities could reveal more about its ecological role and potential applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas urumqiensis Gram-negative rod motile aerobic 37 mesophilic 1684789 PNRG00000000.1 Bac0018124 Paenibacillus polymyxa strain PIC73 "Paenibacillus polymyxa strain PIC73 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive as a facultative anaerobe. This strain exhibits optimal growth at a temperature of 37.0°C, indicating a preference for warm environments. As a chemoheterotroph, P. polymyxa strain PIC73 derives its energy from organic compounds, highlighting its metabolic versatility in diverse habitats.↵↵The ecological adaptability of P. polymyxa strain PIC73 may allow it to occupy various niches, potentially contributing to soil health and nutrient cycling. Its sporulation capability suggests resilience in fluctuating environmental conditions, enabling the organism to survive adverse situations such as nutrient depletion or desiccation. The ability to grow in both aerobic and anaerobic conditions further underscores its adaptability, facilitating colonization in a range of environments where oxygen levels may vary.↵↵Overall, the traits of P. polymyxa strain PIC73 suggest it could play a significant role in microbial communities, particularly in environments where organic matter is present, enhancing nutrient availability and contributing to soil microbiome dynamics." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus polymyxa Positive Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Sporulating 1406 PNXP00000000.1 Bac0018125 Paenibacillus terrae strain PIC167 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus terrae 159743 PNXQ00000000.1 Bac0018126 Trinickia dabaoshanensis strain GIMN1.004 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia dabaoshanensis soil 564714 PNYA00000000.1 Bac0018127 Glutamicibacter soli strain NHPC-3 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter soli 453836 POAF00000000.1 Bac0018128 Fervidicoccus sp. Thermoproteati Thermoproteota Thermoprotei Fervidicoccales Fervidicoccaceae Fervidicoccus Fervidicoccus sp. 2060324 POCB00000000.1 Bac0018129 Pseudomonas sp. GP01-A4 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GP01-A4 2070571 PODW00000000.1 Bac0018130 Pseudomonas sp. GW704-F2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GW704-F2 2070577 POEC00000000.1 Bac0018131 Pseudomonas sp. MPR-R2A5 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MPR-R2A5 2070622 POFV00000000.1 Bac0018132 Pseudomonas sp. FW305-25 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-25 2070636 POGJ00000000.1 Bac0018133 Pseudomonas sp. FW305-130 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-130 2070644 POGR00000000.1 Bac0018134 Pseudomonas sp. FW306-2-11AA Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW306-2-11AA 2070663 POHK00000000.1 Bac0018135 Pseudomonas sp. FW305-70 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-70 2751342 POHP00000000.1 Bac0018136 Pseudomonas sp. GW456-E7 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GW456-E7 2070669 POHQ00000000.1 Bac0018137 Pseudomonas sp. FW305-BF6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-BF6 2070673 POHU00000000.1 Bac0018138 Pseudomonas sp. FW305-17 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-17 2070681 POIC00000000.1 Bac0018139 Vibrio diazotrophicus strain 60.6B Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio diazotrophicus 685 POSH00000000.1 Bac0018140 Vibrio diazotrophicus strain 60.27F Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio diazotrophicus 685 POSK00000000.1 Bac0018141 Novacetimonas maltaceti strain LMG 1529 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Novacetimonas Novacetimonas maltaceti 1203393 POTC00000000.1 Bac0018142 Mycolicibacterium neoaurum strain DSM 44074 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium neoaurum 1795 POTO00000000.1 Bac0018143 Streptomyces sp. NTH33 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NTH33 1735453 POTZ00000000.1 Bac0018144 Micromonospora deserti strain 13K206 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora deserti 2070366 POUB00000000.1 Bac0018145 Stutzerimonas stutzeri strain CCUG 44592 "Stutzerimonas stutzeri strain CCUG 44592 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, deriving its energy from organic compounds, and is obligately aerobic, requiring oxygen for growth and metabolism. ↵↵The habitat of S. stutzeri strain CCUG 44592 is noted to be host-associated, indicating its potential role in specific symbiotic relationships or interactions within a host organism. The precise nature of these associations has not been fully elucidated, but the presence of this strain in a host may suggest a functional role in the host's microbiome or other ecological interactions.↵↵Given its aerobic nature and heterotrophic lifestyle, Stutzerimonas stutzeri strain CCUG 44592 may contribute to the degradation of organic material within its host environment, potentially influencing nutrient cycling and the overall health of the host ecosystem. This bacterium exemplifies the complex relationships that microbial species can have with their hosts, highlighting the importance of understanding host-associated microbes in broader ecological studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 POUM00000000.1 Bac0018146 Enterobacter cancerogenus strain FDAARGOS_232 "Enterobacter cancerogenus strain FDAARGOS_232 is a Gram-negative, facultative anaerobic bacterium primarily associated with plant habitats. This strain exhibits the characteristic metabolic flexibility of facultative anaerobes, allowing it to thrive in both aerobic and anaerobic environments. Such adaptability may provide insights into its potential roles in plant-associated microbial communities, particularly in scenarios where oxygen availability fluctuates.↵↵The Gram-negative nature of Enterobacter cancerogenus indicates that it possesses a complex cell wall structure, which includes an outer membrane containing lipopolysaccharides. This structural feature can influence the bacterium's interactions with its environment, including its ability to colonize plant surfaces or enter plant tissues.↵↵The ecological significance of Enterobacter cancerogenus strain FDAARGOS_232 may extend to its involvement in plant health and nutrient cycling. Given its plant-associated habitat, this strain could play a role in promoting plant growth through mechanisms such as nitrogen fixation or the production of growth-promoting substances. Furthermore, its ability to survive in varying oxygen conditions may enhance its resilience in diverse agricultural settings, potentially contributing to its utility in biotechnological applications aimed at improving crop yield or sustainability. Overall, the study of this strain could provide valuable insights into the complex dynamics of plant-microbe interactions and the functional roles of bacteria in agricultural ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cancerogenus Negative Facultative anaerobe plants 69218 POWA00000000.1 Bac0018147 Pseudomonas gingeri NCPPB 3146 = LMG 5327 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas gingeri 707248 POWE00000000.1 Bac0018148 Azospirillum argentinense strain REC3 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum argentinense 2970906 POWG00000000.1 Bac0018149 Vibrio agarivorans strain CAIM 1911 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio agarivorans aerobic 153622 POWH00000000.1 Bac0018150 Pantoea sp. ICBG 1758 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. ICBG 1758 2071682 POWL00000000.1 Bac0018151 Roseibium marinum strain DSM 17023 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Roseibium Roseibium marinum 281252 PPCN00000000.1 Bac0018152 Veillonella sp. S13053-19 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. S13053-19 2027456 PPDA00000000.1 Bac0018153 Halobacteriovorax sp. DA5 Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. DA5 2067553 PPDJ00000000.1 Bac0018154 Corynebacterium sp. 13CS0277 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. 13CS0277 2071994 PPDL00000000.1 Bac0018155 Staphylococcus devriesei strain CCUG 58238 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus devriesei 586733 PPRG00000000.1 Bac0018156 Pseudomonas sp. MPR-ANC1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MPR-ANC1 2075548 PPRY00000000.1 Bac0018157 Pseudomonas sp. MPBD7-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MPBD7-1 2075549 PPRZ00000000.1 Bac0018158 Pseudomonas sp. FW305-E2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. FW305-E2 2075558 PPSJ00000000.1 Bac0018159 Halopseudomonas oceani strain DSM 100277 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Halopseudomonas Halopseudomonas oceani 1708783 PPSK00000000.1 Bac0018160 Flavipsychrobacter stenotrophus strain RB1R16 C75 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavipsychrobacter Flavipsychrobacter stenotrophus 2077091 PPSL00000000.1 Bac0018161 Pseudoalteromonas phenolica strain S3663 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas phenolica 161398 PPSW00000000.1 Bac0018162 Pseudoalteromonas phenolica strain S3898 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas phenolica 161398 PPSX00000000.1 Bac0018163 Pseudoalteromonas rubra strain S1946 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas rubra 43658 PPUZ00000000.1 Bac0018164 Arthrobacter glacialis strain HLT2-12-2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter glacialis 1664 PPXC00000000.1 Bac0018165 Cryobacterium zongtaii strain TMN-42 C225 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium zongtaii 1259217 PPXD00000000.1 Bac0018166 Cryobacterium zongtaii strain TMB1-8 C435 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium zongtaii 1259217 PPXF00000000.1 Bac0018167 Pseudomonas sp. MWU13-2625 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MWU13-2625 2071712 PPYC00000000.2 Bac0018168 Anaerolineales bacterium Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineales bacterium 2073117 PQAL00000000.1 Bac0018169 Dehalococcoidia bacterium Bacillati Chloroflexota Dehalococcoidia Dehalococcoidia bacterium 2026734 PQAO00000000.1 Bac0018170 Pseudomonas sp. MWU12-2534b Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MWU12-2534b 2071715 PQCH00000000.2 Bac0018171 Bacillus sp. MBGLi97 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. MBGLi97 2070760 PQCL00000000.1 Bac0018172 Bosea psychrotolerans strain 1131 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea psychrotolerans 1871628 PQFZ00000000.1 Bac0018173 Paraburkholderia eburnea strain JCM 18070 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia eburnea 1189126 PQGA00000000.1 Bac0018174 Burkholderia gladioli strain Coa14 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia gladioli Yes phyllosphere 28095 PQII00000000.1 Bac0018175 Cronobacter malonaticus strain S1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter malonaticus homes 413503 PQJL00000000.1 Bac0018176 Candidatus Pantoea alvi Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Candidatus Pantoea alvi 2080494 PQJV00000000.1 Bac0018177 Pantoea sp. PSNIH5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. PSNIH5 1758192 PQJX00000000.1 Bac0018178 Citrobacter amalonaticus strain S1285 "Citrobacter amalonaticus strain S1285 is a Gram-negative bacterium that resides in the gut, exhibiting facultative anaerobic growth characteristics. This strain is part of the diverse genus Citrobacter, which is known for its metabolic versatility and ability to thrive in varying oxygen environments. As a facultative anaerobe, C. amalonaticus strain S1285 can utilize oxygen for respiration when available, but is also capable of fermentative metabolism in its absence, allowing it to adapt to fluctuating conditions within the gut microbiome.↵↵The habitat of the gut provides a complex ecosystem where C. amalonaticus strain S1285 likely plays a role in the digestion of nutrients and the maintenance of gut health, although specific functional contributions of this strain remain to be elucidated. Its presence in the gut microbiota may influence the metabolic processes of other microorganisms, contributing to a balanced microbial community.↵↵Due to its Gram-negative cell wall structure, C. amalonaticus strain S1285 may possess unique surface characteristics that facilitate interactions with the gut environment, including potential roles in nutrient absorption and modulation of host immune responses. Understanding the specific interactions and functions of C. amalonaticus strain S1285 within the gut ecosystem could provide insights into its contributions to gut health and overall host physiology. Further research could elucidate the strain's metabolic pathways and its potential impact on gut microbial dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter amalonaticus Negative Facultative anaerobe gut 35703 PQLX00000000.1 Bac0018179 Citrobacter freundii strain S1284 "Citrobacter freundii strain S1284 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This strain does not undergo sporulation, which suggests a reliance on environmental conditions for survival rather than a highly resilient dormant state. C. freundii is commonly found in various habitats, including hospital sewage, intestinal tracts, sewage systems, soil, and surface waters, indicating its versatile adaptability to different environments.↵↵As a facultative anaerobe, C. freundii strain S1284 can thrive in both aerobic and anaerobic conditions, allowing it to exploit a range of ecological niches. Its presence in hospital sewage highlights its potential association with anthropogenic environments, where it may play a role in the microbial community dynamics of waste systems. The bacterium's occurrence in diverse habitats, from soil to intestinal tracts, suggests it may contribute to nutrient cycling and organic matter decomposition in these ecosystems. ↵↵This adaptability and ubiquity may offer insights into the ecological roles of Citrobacter species in biogeochemical processes, particularly in environments impacted by human activity. Further studies on strain S1284 could elucidate its function in microbial communities, especially concerning its interaction with other microorganisms in nutrient-rich or contaminated settings." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 PQLY00000000.1 Bac0018180 Streptomyces sp. Ru72 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ru72 2080747 PQSR00000000.1 Bac0018181 Streptomyces sp. Ru71 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ru71 2080746 PQSS00000000.1 Bac0018182 Escherichia coli strain 286A 286ANODE_120_length_352_cov_40.3022 "Escherichia coli strain 286A (286ANODE_120) is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which is consistent with its common association with host organisms, suggesting an adaptation to the warm-blooded environments of mammals. As a facultative anaerobe, E. coli strain 286A can grow in both the presence and absence of oxygen, allowing it to occupy varied niches within the host's microbiota and potentially utilize different metabolic pathways depending on the environmental conditions.↵↵The host-associated habitat of this strain indicates its likely role in symbiotic relationships within the gastrointestinal tract, where it can contribute to nutrient absorption and maintain gut homeostasis. Understanding the physiological traits of E. coli strain 286A can provide insights into its functional capabilities in host environments, particularly how it adapts to fluctuating oxygen levels and temperature variations. This adaptability may reflect broader ecological strategies employed by E. coli strains in similar environments, illuminating the dynamics of microbial populations in host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PQTE00000000.1 Bac0018183 Flavobacterium alvei strain HR-AY HR-AY_22 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium alvei 2080416 PQVG00000000.1 Bac0018184 Acaryochloris thomasi RCC1774 Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Acaryochloridaceae Acaryochloris Acaryochloris thomasi 1764569 PQWO00000000.1 Bac0018185 Legionella pneumophila strain LG57 "Legionella pneumophila strain LG57 is a rod-shaped, aerobic, and nonsporulating bacterium that exhibits a Gram-negative cell wall structure. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. Legionella pneumophila is typically found in host-associated environments, which may include association with protozoa or within biofilms in water systems. ↵↵The single-cell arrangement of LG57 suggests a potential adaptation for survival in its ecological niches, where individual cells can interact with various host organisms. The aerobic nature of this strain implies that it requires oxygen for metabolic processes, which aligns with its habitat preferences often found in oxygen-rich environments, such as warm water sources.↵↵Given its ecological context, Legionella pneumophila strain LG57 likely plays a role in the microbial dynamics of its environment, particularly in the interactions with host organisms. Understanding the specific traits of this strain contributes to the broader knowledge of its ecological role and can inform studies on microbial community structures in water systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 PQXA00000000.1 Bac0018186 Campylobacter jejuni strain SS6R 89 "Campylobacter jejuni strain SS6R 89 is a Gram-negative bacterium characterized by its spirilla shape and the capability to form chains or exist as single cells. This strain is a microaerophile, indicating its requirement for lower oxygen levels than those present in the atmosphere for optimal growth. It is a heterotrophic organism, deriving its energy from organic compounds, which aligns with its ecological versatility, as it can inhabit multiple environments. ↵↵The optimal growth temperature for C. jejuni strain SS6R 89 is notably low, suggesting a potential adaptation to cooler habitats, which may influence its ecological niches and interactions within microbial communities. The ability to thrive in such conditions could provide insights into its survival strategies and metabolic adaptations, particularly in environments where temperatures fluctuate or are consistently low. Understanding these traits may enhance our knowledge of how this strain, and Campylobacter species in general, interact with their surroundings and contribute to microbial diversity in various ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PQYC00000000.1 Bac0018187 Campylobacter jejuni strain SO-76 113 "Campylobacter jejuni strain SO-76 113 is a Gram-negative bacterium characterized by its unique spirilla shape and ability to arrange in chains or as singles. This strain is classified as a microaerophile, requiring a low oxygen environment for optimal growth, which reflects its adaptation to specific ecological niches. Notably, this strain’s optimal temperature is reported at 0.0 °C, suggesting that it may thrive in cooler environments, which could influence its habitat preferences.↵↵As a heterotroph, C. jejuni strain SO-76 113 relies on organic compounds as an energy source, indicating its role in nutrient cycling within its habitat. The diversity of environments where this strain can be found underscores its ecological versatility and potential interactions with various microbial communities. Understanding the specific habitats of C. jejuni strain SO-76 113 may provide insights into its ecological roles, such as its influence on microbial dynamics in cooler ecosystems or its interactions with other microorganisms. This adaptability highlights the importance of studying strain-specific traits to better understand the ecological functions and environmental resilience of Campylobacter species." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PQYL00000000.1 Bac0018188 Campylobacter jejuni strain SO-73 61 "Campylobacter jejuni strain SO-73 61 is a Gram-negative bacterium characterized by its spirilla shape and its tendency to exist in both single and chain arrangements. This strain thrives as a microaerophile, requiring reduced oxygen levels for optimal growth. Notably, it demonstrates heterotrophic behavior, utilizing organic compounds as its energy source. The optimal temperature for growth has yet to be defined; however, the strain is known to inhabit diverse environments, indicating a degree of ecological versatility.↵↵The microaerophilic requirement of Campylobacter jejuni strains, including SO-73 61, suggests an adaptation to specific niches where oxygen levels are limited, such as in the gastrointestinal tracts of warm-blooded animals or in certain environmental settings. This characteristic may contribute to its ecological success in various habitats. Understanding the specific environmental parameters that favor the growth of this strain could provide insight into its potential roles within microbial communities and its interactions with other organisms in its habitat." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PQYO00000000.1 Bac0018189 Campylobacter jejuni strain SO-37 113 "Campylobacter jejuni strain SO-37 113 is a Gram-negative bacterium characterized by its spirilla morphology and the ability to exist in both single and chain arrangements. This strain is a heterotrophic microbe, indicating that it derives its energy from organic compounds, which may provide insights into its metabolic versatility in diverse environments. C. jejuni strain SO-37 113 is classified as a microaerophile, meaning it requires reduced levels of oxygen for optimal growth, a trait that typically aligns with its habitat preferences. ↵↵This strain displays an optimal temperature of 0.0 °C, suggesting a potential adaptation to cold environments, which could be relevant for its survival in various ecological niches. The ability to thrive in multiple habitats indicates a broad ecological range, allowing it to exploit various substrates in environments that meet its oxygen and temperature requirements. ↵↵Understanding the ecological role of Campylobacter jejuni strain SO-37 113 may shed light on its interactions within microbial communities, particularly in cold habitats where nutrient availability could influence its growth dynamics and competitive relationships with other microorganisms. This adaptability underscores the importance of examining environmental conditions that facilitate the persistence and proliferation of this strain in its natural environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PQZA00000000.1 Bac0018190 Campylobacter jejuni strain SO-16 83 "Campylobacter jejuni strain SO-16 83 is a Gram-negative bacterium characterized by its spirilla shape and ability to exist in both single and chain arrangements. This strain is classified as a microaerophile, indicating that it thrives in environments with reduced oxygen levels, which is typical for many Campylobacter species. Its heterotrophic nature suggests that it derives energy from organic compounds, reflecting its adaptability to various ecological niches.↵↵The optimal growth temperature for Campylobacter jejuni strain SO-16 83 is notably low, at 0.0°C, which implies a potential capacity to survive in cold environments. This trait could be significant for its ecological role, possibly allowing it to inhabit niches that are less accessible to other bacteria, thereby influencing microbial community dynamics in those habitats. The ability to form chains may also facilitate its survival and colonization in varied environments, contributing to its ecological flexibility.↵↵Overall, Campylobacter jejuni strain SO-16 83 exemplifies the diverse adaptations of bacteria within the Campylobacter genus, particularly in terms of temperature tolerance and oxygen requirements, which may play a crucial role in its ecological interactions and survival strategies in multiple habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PQZI00000000.1 Bac0018191 Campylobacter jejuni strain CB381 97 "Campylobacter jejuni strain CB381 97 is a Gram-negative bacterium characterized by its spirilla shape and tendency to occur in chains or as singles. This strain is classified as a microaerophile, indicating that it thrives in environments with reduced oxygen levels. It is a heterotrophic organism, utilizing organic compounds as its energy source, which reflects its adaptability to various habitats.↵↵The optimal temperature for growth of C. jejuni strain CB381 97 is notably low, with an optimal growth temperature of 0.0°C, suggesting that this strain may exhibit psychrophilic characteristics. Such an adaptation can allow the strain to inhabit a range of cold environments, possibly including refrigerated food products or cold aquatic ecosystems.↵↵The ability of C. jejuni strain CB381 97 to survive and proliferate in diverse habitats, coupled with its specific oxygen and temperature requirements, highlights its ecological versatility. This adaptability may pose implications for its role in food safety and environmental microbiology, particularly in contexts where temperature control is critical for managing microbial populations. Further exploration of this strain’s ecological niches could provide valuable insights into its interactions with other microorganisms in cold environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PQZW00000000.1 Bac0018192 Campylobacter jejuni strain CB375 "Campylobacter jejuni strain CB375 is a Gram-negative bacterium characterized by its spirilla shape and ability to form chains or exist as single cells. This strain is a heterotrophic microorganism, meaning it derives its energy from organic compounds, and it has been observed to thrive in a microaerophilic environment, indicating a requirement for reduced oxygen levels for optimal growth. ↵↵The optimal temperature for the growth of Campylobacter jejuni strain CB375 is particularly notable, as it is adapted to a range of habitats, suggesting versatility in environmental conditions. Its ability to grow in diverse habitats could provide insights into its ecological roles and interactions within microbial communities. ↵↵Given its unique physiological traits, Campylobacter jejuni strain CB375 may play a significant role in the decomposition of organic matter in microaerobic niches, contributing to nutrient cycling in various ecosystems. Understanding the specific conditions and environments that support the growth of this strain could enhance our knowledge of its environmental impact and potential applications in microbiological research." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRAC00000000.1 Bac0018193 Campylobacter jejuni strain CB367 76 "Campylobacter jejuni strain CB367 76 is a Gram-negative bacterium characterized by its spirilla shape and the ability to exist in both single cells and chains. This strain thrives as a microaerophile, necessitating a reduced oxygen environment for optimal growth. Notably, it is heterotrophic, deriving its energy from organic compounds, which is indicative of its metabolic versatility. ↵↵The optimal temperature for the growth of Campylobacter jejuni strain CB367 76 is currently unspecified, but it is generally well-documented that Campylobacter species prefer a temperature range conducive to their survival and proliferation. This strain is found in multiple habitats, reflecting its adaptability to diverse ecological niches.↵↵The combination of these traits suggests that Campylobacter jejuni strain CB367 76 may occupy a variety of environments where organic matter is present, potentially including soil, water, and animal intestines. The microaerophilic nature of this strain could imply a specialized role in specific ecosystems where oxygen levels are low, thus contributing to the microbial diversity and metabolic processes within these habitats. Understanding the ecological roles of such strains can provide insights into their interactions within microbial communities and their potential impact on environmental health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRAK00000000.1 Bac0018194 Campylobacter jejuni strain CB366 37 "Campylobacter jejuni strain CB366 37 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and ability to exist in both single cells and chains. This strain exhibits heterotrophic metabolism, relying on organic compounds as its primary energy source, which is indicative of its adaptability to diverse environments. Optimal growth conditions for strain CB366 37 are not explicitly defined, though it is known to thrive at a temperature of 0.0°C, suggesting a capability for surviving in cooler habitats.↵↵The ecological versatility of Campylobacter jejuni strain CB366 37 is highlighted by its presence in multiple habitats, indicating that it may be capable of colonizing various niches. This adaptability can be crucial for survival in fluctuating environmental conditions, potentially allowing the strain to exploit different ecological resources. The microaerophilic nature of this bacterium suggests it may inhabit environments with limited oxygen availability, which is often found in specific ecological niches such as animal intestines or certain aquatic environments. Understanding the growth characteristics and ecological preferences of strain CB366 37 can provide insight into its role within microbial communities and its interactions with its environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRAL00000000.1 Bac0018195 Campylobacter jejuni strain CB345 123 "Campylobacter jejuni strain CB345 123 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This strain exhibits microaerophilic properties, indicating that it thrives in environments with reduced oxygen levels, which is typical for many Campylobacter species. As a heterotroph, C. jejuni strain CB345 123 utilizes organic compounds as its energy source, allowing it to adapt to a variety of habitats. ↵↵The optimal growth temperature for this strain is notably low at 0.0°C, suggesting a potential adaptation to cold environments, which may influence its ecological niche and interactions with other microbial communities. This trait could enable C. jejuni strain CB345 123 to persist in cooler habitats where few other pathogens can survive, highlighting its ecological versatility. Understanding its growth and survival strategies in varied environments may provide insights into its role in food safety and microbiological ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRBB00000000.1 Bac0018196 Campylobacter jejuni strain CB336 118 "Campylobacter jejuni strain CB336 118 is a Gram-negative bacterium characterized by its spirilla shape and its tendency to form chains or exist as single cells. This strain, like other members of its species, is a microaerophile, requiring reduced levels of oxygen for optimal growth. It exhibits heterotrophic metabolism, utilizing organic compounds as its energy source, which allows it to thrive in diverse habitats. ↵↵Notably, C. jejuni strain CB336 118 has an optimal growth temperature that is not specified but is understood to require environments that can support its metabolic needs. The strain's adaptability to various habitats suggests a potential ecological versatility, enabling it to inhabit different niches within its environment. This characteristic positions it as a significant organism in microbial communities, where it may play roles in nutrient cycling or interactions with other microorganisms.↵↵The unique combination of traits observed in C. jejuni strain CB336 118 underscores its potential significance in various ecological contexts, particularly in environments where microaerophilic conditions prevail. Further exploration of its specific habitat preferences could reveal insights into its ecological interactions and functional roles within microbial ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRBJ00000000.1 Bac0018197 Campylobacter jejuni strain CB333 104 "Campylobacter jejuni strain CB333 104 is a Gram-negative, spirilla-shaped bacterium that typically exists in single cells or chains. This strain is classified as a microaerophile, indicating that it requires a low-oxygen environment for optimal growth and metabolism. As a heterotroph, strain CB333 104 relies on organic compounds as its energy source, which suggests its potential role in nutrient cycling within its habitat. ↵↵The optimal growth temperature for Campylobacter jejuni strain CB333 104 has not been specified in the provided traits; however, members of the Campylobacter genus are generally known to thrive at temperatures around 42°C. This trait highlights the bacterium's adaptation to environments that may be warmer than typical ambient conditions. ↵↵Given its ability to inhabit multiple environments, strain CB333 104 may be associated with various ecological niches, potentially including soil, water, and animal reservoirs, which can influence its interactions within microbial communities. The capacity to form chains could enhance its survival and competitive interactions in these diverse habitats. Understanding the ecological roles and interactions of C. jejuni strain CB333 104 within its environments may provide insights into its contributions to microbial diversity and ecosystem function." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRBM00000000.1 Bac0018198 Campylobacter jejuni strain CB332 45 "Campylobacter jejuni strain CB332 45 is a Gram-negative, spiral-shaped bacterium characterized by its tendency to form chains or exist as single cells. This strain is classified as a microaerophile, indicating that it requires reduced oxygen levels for optimal growth and survival. Campylobacter jejuni strain CB332 45 is a heterotrophic organism, relying on organic compounds as its energy source, and demonstrates adaptability to a variety of habitats, although specific environmental preferences are not detailed in the available data. ↵↵The optimal growth temperature for this strain is notably listed as 0.0, which may suggest specific experimental conditions or an atypical reporting format, requiring further clarification. The ecological versatility of Campylobacter jejuni, including strain CB332 45, highlights its potential presence in diverse environments, ranging from agricultural settings to natural water sources. Understanding the ecological niches occupied by this strain can provide insights into its role in microbial communities and its interactions with other organisms within those environments. Continued exploration of its habitat and growth conditions may reveal further implications for its ecological significance and behavior in various ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRBN00000000.1 Bac0018199 Campylobacter jejuni strain CB313 121 "Campylobacter jejuni strain CB313 121 is a Gram-negative bacterium characterized by its spirilla shape and ability to exist in both single and chain arrangements. This strain is classified as a microaerophile, indicating its requirement for reduced oxygen levels for optimal growth and metabolism. It exhibits heterotrophic behavior, acquiring energy from organic compounds rather than performing photosynthesis. ↵↵Strain CB313 121 thrives in a variety of habitats, which suggests a versatile ecological niche that may contribute to its adaptation and survival in diverse environments. Notably, this strain has an optimal temperature of 0.0°C, which raises questions regarding its thermal tolerance and potential ecological roles in cold environments. The ability to grow at such low temperatures may imply that C. jejuni strain CB313 121 could be adapted to specific ecological niches, possibly influencing its interactions within microbial communities or its survival strategies in fluctuating environments.↵↵Further studies on this strain could provide insights into its metabolic pathways and ecological significance, particularly in cold habitats where few microorganisms are active, thus contributing to our understanding of microbial diversity and resilience in extreme conditions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRBV00000000.1 Bac0018200 Campylobacter jejuni strain CB312 86 "Campylobacter jejuni strain CB312 86 is a Gram-negative, spirilla-shaped bacterium that typically exists as singles or in chains. This strain is classified as a microaerophile, indicating that it requires reduced levels of oxygen for optimal growth. Its heterotrophic nature suggests that it utilizes organic compounds as an energy source, which aligns with its ecological versatility, allowing it to inhabit multiple environments.↵↵The optimal growth temperature for C. jejuni strain CB312 86 is notably low, with a reported optimal temperature of 0.0 °C. This characteristic may indicate that this strain is adapted to cold environments, potentially influencing its distribution and ecological role in cooler habitats. The ability to thrive in varied ecological niches and under specific oxygen conditions highlights its potential adaptability and survival strategies in fluctuating environments.↵↵Overall, the unique combination of traits exhibited by Campylobacter jejuni strain CB312 86 may contribute to its ecological resilience, allowing it to persist in diverse habitats, which could have implications for its interactions with other microbial communities and environmental factors. Further research into the specific habitats occupied by this strain could provide deeper insights into its ecological and biological significance." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRBW00000000.1 Bac0018201 Campylobacter jejuni strain CB310 89 "Campylobacter jejuni strain CB310 89 is a Gram-negative, spirilla-shaped bacterium characterized by its tendency to exist in both single and chain arrangements. This strain is classified as a microaerophile, indicating that it requires reduced oxygen levels for optimal growth, which aligns with its natural habitat found in diverse environments. Campylobacter jejuni is known to be a heterotroph, utilizing organic compounds as an energy source, which is typical for many microorganisms residing in varied ecological niches.↵↵The optimal temperature for growth of strain CB310 89 is recorded at 0.0, suggesting that further studies may be needed to clarify its physiological responses at varying temperatures, as it may indicate a unique adaptability or survival strategy under specific environmental conditions. Given the known traits of this strain and the broader characteristics of Campylobacter species, it is likely to play a role in microbial communities where it contributes to the breakdown of organic materials, potentially influencing nutrient cycling within its habitat. Understanding the ecological role of Campylobacter jejuni strain CB310 89 could provide insights into the dynamics of microbial interactions in environments where it is found, shedding light on its contributions to ecosystem function and stability." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRBY00000000.1 Bac0018202 Campylobacter jejuni strain CB302 83 "Campylobacter jejuni strain CB302 83 is a Gram-negative bacterium characterized by its spirilla shape and a tendency to exist in chains or as single cells. This strain is a microaerophile, indicating that it requires reduced levels of oxygen for optimal growth, which is typical for many members of the Campylobacter genus. It is a heterotrophic organism, relying on organic compounds for energy, which situates it within diverse ecological niches.↵↵The optimal growth temperature of Campylobacter jejuni strain CB302 83 is not explicitly stated but can be inferred to be compatible with the typical growth range for related strains, which often thrive at temperatures around 42°C. This suggests a potential association with warm-blooded animals, as well as environments that can reach elevated temperatures, although the specific habitat for this strain is noted as ""multiple,"" indicating a broader ecological adaptability.↵↵Given its characteristics, Campylobacter jejuni strain CB302 83 may play a role in nutrient cycling within its habitat, contributing to the breakdown of organic matter. Its microaerophilic nature and heterotrophic metabolism suggest that it may be involved in specific interactions in environments where oxygen levels fluctuate, such as in the gastrointestinal tracts of animals or in microbial communities of soil and water. Further research could illuminate its ecological functions and interactions within these complex systems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRCF00000000.1 Bac0018203 Campylobacter jejuni strain CB293 99 "Campylobacter jejuni strain CB293 99 is a Gram-negative, spiral-shaped bacterium characterized by its unique cell arrangement, which can be observed in both singles and chains. This strain is a heterotrophic microaerophile, indicating its requirement for a reduced level of oxygen for growth, which is typical for many Campylobacter species. Optimal growth conditions for strain CB293 99 occur at an ambient temperature of 0.0 °C, suggesting a possible adaptation to cooler environments or specific habitats where such temperatures may be prevalent.↵↵As a member of the Campylobacter genus, strain CB293 99 inhabits a variety of ecological niches, which may include both terrestrial and aquatic environments. Its heterotrophic lifestyle suggests that it relies on organic compounds for energy, potentially making it an integral player in nutrient cycling within its habitat. The ability to form chains may facilitate interactions with other microorganisms, contributing to complex microbial communities.↵↵The ecological adaptability of Campylobacter jejuni strain CB293 99 to diverse habitats, coupled with its specific growth requirements, underscores the importance of studying such strains to understand their roles in microbial ecosystems and their potential interactions within food webs. Further research may elucidate the ecological significance of this strain in relation to its environmental conditions and its interactions with other microbial populations." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 PRCN00000000.1 Bac0018204 Pseudomonas sp. MWU12-2312b Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MWU12-2312b 2071716 PRCU00000000.1 Bac0018205 Xanthomonas sp. CFBP 7698 X-CFBP7698-G129 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas sp. CFBP 7698 2082399 PRDN00000000.1 Bac0018206 Xanthomonas campestris strain CFBP 7700 Xc-CFBP7700-G115 "Xanthomonas campestris strain CFBP 7700 Xc-CFBP7700-G115 is a Gram-negative, rod-shaped bacterium that thrives in host-associated habitats and demonstrates an optimal growth temperature of 25.0 °C. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. ↵↵The rod shape and aerobic nature of X. campestris suggest adaptations for survival in environments where oxygen is readily available, potentially influencing its interactions with host organisms. As an inhabitant of host-associated habitats, this strain may play a significant role in plant-microbe interactions, potentially influencing plant health and development. ↵↵While specific pathogenicity traits are not detailed, the genus Xanthomonas is known for its association with various plant diseases, suggesting that strain CFBP 7700 may engage in complex biochemical interactions within its ecological niche. Further investigation into the metabolic pathways and ecological roles of this strain could provide insights into its contributions to host health and its potential applications in agricultural microbiology. Understanding its niche and interactions may also uncover strategies for managing plant diseases linked to other strains within the genus." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas campestris Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living 339 PRDO00000000.1 Bac0018207 Albidovulum inexpectatum strain DSM 12048 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Albidovulum Albidovulum inexpectatum 196587 PRDS00000000.1 Bac0018208 Achromobacter spanius strain 6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter spanius 217203 PREU00000000.1 Bac0018209 Priestia megaterium strain TG1-E1 tig00004975_corrected "Priestia megaterium strain TG1-E1 (tig00004975_corrected) is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and its obligate aerobic metabolism. This strain thrives in diverse habitats, indicating its ecological versatility and potential adaptability to various environmental conditions. ↵↵As a member of the genus Priestia, P. megaterium is notable for its robust physiological traits, which include the formation of endospores that enable it to endure unfavorable environmental conditions. The ability to sporulate is particularly advantageous in fluctuating habitats, allowing this strain to survive periods of nutrient deprivation or other stressors. Furthermore, its aerobic nature suggests that it plays a significant role in environments where oxygen is readily available, potentially contributing to biogeochemical cycles, such as carbon and nitrogen cycling, through its metabolic activities.↵↵The ecological implications of Priestia megaterium strain TG1-E1 extend to its potential applications in biotechnology, particularly in processes that require aerobic microorganisms. Overall, the adaptability of this strain to multiple habitats highlights its significance in ecological studies and biotechnological applications, paving the way for future research that may elucidate its roles in various microbial communities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia megaterium Positive Rod Yes 1 Aerobe Mesophilic Multiple Free living Sporulating 1404 PRKV00000000.1 Bac0018210 Arthrobacter agilis strain CGMCC Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter agilis 37921 PRKX00000000.1 Bac0018211 Faecalibacterium prausnitzii strain APC924/119 "Faecalibacterium prausnitzii strain APC924/119 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, utilizing organic compounds for energy in anaerobic conditions. This strain exhibits an optimal growth temperature of 37.0°C, which aligns with the physiological conditions found in the human gut, suggesting a potential association with the intestinal microbiome. F. prausnitzii is known to inhabit various environments, indicating its adaptability to multiple habitats, though its predominant and well-studied niche is the gastrointestinal tract of humans and other animals.↵↵The anaerobic nature of F. prausnitzii points to its role in fermentation processes, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for gut health. This strain is often linked to maintaining intestinal homeostasis and potentially plays a protective role against inflammatory bowel diseases. Its presence is typically associated with a healthy gut microbiota composition, further underscoring its significance in gut health and metabolic functions.↵↵Overall, the ecological role of F. prausnitzii strain APC924/119 may extend beyond mere fermentation; it could also influence the immune response and metabolic pathways within the host, highlighting its importance in maintaining a balanced gut microbiome. Understanding its specific contributions to gut health could provide insights into therapeutic strategies for various gastrointestinal disorders." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 PRLF00000000.1 Bac0018212 Paenibacillus illinoisensis strain E3 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus illinoisensis aerobic 59845 PRLG00000000.1 Bac0018213 Pokkaliibacter plantistimulans strain 228 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Balneatrichaceae Pokkaliibacter Pokkaliibacter plantistimulans 1635171 PRLP00000000.1 Bac0018214 Escherichia coli strain DP254 "Escherichia coli strain DP254 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at 37.0°C, which corresponds to the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli DP254 can grow in both aerobic and anaerobic environments, reflecting its versatility in utilizing various metabolic pathways depending on the availability of oxygen.↵↵The Gram-negative cell wall structure of E. coli strain DP254 contributes to its resilience in diverse environments, as it possesses an outer membrane that can act as a barrier to certain antimicrobial agents. This feature, combined with its ability to thrive in host-associated habitats, suggests that E. coli DP254 may play a significant role in the microbial communities of its host, potentially influencing nutrient cycling and host health.↵↵The ability of E. coli DP254 to exist in both aerobic and anaerobic conditions not only highlights its metabolic adaptability but may also provide insights into its ecological interactions within the gut microbiome. Such characteristics underscore the importance of this strain in understanding microbial dynamics and interactions in host-associated ecosystems, where it may contribute to the overall homeostasis of the microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PSNQ00000000.1 Bac0018215 Solimonas fluminis strain HR-BB HR-BB_34 Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Solimonas Solimonas fluminis 2086571 PSNW00000000.1 Bac0018216 Escherichia coli strain FEX725 "Escherichia coli strain FEX725 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of many mammalian hosts, suggesting a close association with these environments. As a facultative anaerobe, E. coli FEX725 can grow in both the presence and absence of oxygen, enhancing its adaptability to varied microenvironments within host-associated habitats.↵↵The habitat of E. coli FEX725 is primarily linked to host organisms, indicating its potential role in the gastrointestinal tract, where it may participate in nutrient absorption and gut microbiota dynamics. The ability to survive in both aerobic and anaerobic conditions allows this strain to occupy diverse niches within the host, potentially influencing metabolic processes and microbial interactions.↵↵Understanding the ecological role of E. coli FEX725 provides insights into its contributions to host health and microbiome stability. Its adaptability in fluctuating oxygen levels and temperature suggests that it may play a significant role in the resilience of gut microbiota, especially under varying physiological conditions, such as during dietary changes or microbial perturbations. Further exploration of this strain's functional capabilities could enhance our knowledge of microbial dynamics in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PSOV00000000.1 Bac0018217 Nitrososphaerota archaeon Thermoproteati Nitrososphaerota Nitrososphaerota archaeon 2026795 PSPI00000000.1 Bac0018218 Subdoligranulum sp. APC924/74 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Subdoligranulum sp. APC924/74 2086273 PSQF00000000.1 Bac0018219 Blautia obeum strain APC942/31-1 "Blautia obeum strain APC942/31-1 is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, primarily residing in the intestinal microflora of animals. This anaerobic organism thrives in oxygen-deprived environments, which is characteristic of the gut microbiota. As a member of the gut microbiome, B. obeum plays a crucial role in the fermentation of dietary fibers and other complex carbohydrates, contributing to the overall metabolic processes within the intestinal environment.↵↵The ability of B. obeum to utilize a range of organic compounds as energy sources underscores its adaptability and importance in the digestive processes of host organisms. The strain's nonsporulating nature indicates a reliance on stable habitats, which aligns with its presence in the animal intestinal tract. This habitat provides a rich source of nutrients necessary for its growth and proliferation, reinforcing its role in maintaining gut health.↵↵Blautia obeum strain APC942/31-1 exemplifies the diverse functionality of gut microbes, particularly in the context of nutrient metabolism and interaction with the host's immune system. Its presence and activity may influence the balance of the gut microbiome, potentially impacting the host's nutritional status and overall health. Further investigation into the specific metabolic pathways and interactions of this strain could elucidate its contributions to microbial community dynamics and host-microbe relationships." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 PSQG00000000.1 Bac0018220 Bradyrhizobium sp. Leo170 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Leo170 1571199 PSRR00000000.1 Bac0018221 Escherichia coli strain Ecoli_len:881774 "Escherichia coli strain Ecoli_len:881774 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain Ecoli_len:881774 can grow in both aerobic and anaerobic environments, allowing it to exploit diverse niches within the host's microbiome.↵↵The facultative anaerobic nature of this strain suggests a metabolic versatility that may enable it to survive in various oxygen levels, which is crucial for its persistence in the gastrointestinal tract, where fluctuations in oxygen availability can occur. The ability to thrive at 37.0°C further emphasizes its specialization for life within warm-blooded hosts, potentially influencing its interactions with the host's immune system and gut microbiota.↵↵Given these traits, E. coli strain Ecoli_len:881774 may play a role in the complex microbial community of its host, contributing to essential processes such as nutrient metabolism and the maintenance of gut homeostasis. Its rod shape and ability to form pairs may also facilitate its colonization and interaction with the epithelial surfaces of the gastrointestinal tract, suggesting a potential for intricate microbial interactions that can influence host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PSSV00000000.1 Bac0018222 Marinobacter maroccanus strain N4 KEHDKFFH_76 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter maroccanus 2055143 PSSX00000000.1 Bac0018223 Pseudoclavibacter sp. RFBB5 RFBB5_2119 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Pseudoclavibacter Pseudoclavibacter sp. RFBB5 2080574 PSTZ00000000.1 Bac0018224 Rathayibacter rathayi strain AY1H7 AY1H7_124 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter rathayi 33887 PSUR00000000.1 Bac0018225 Rathayibacter sp. AY1F3 AY1F3_98 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. AY1F3 2080558 PSVF00000000.1 Bac0018226 Haloferax sp. Atlit-24N Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-24N 2077200 PSYT00000000.1 Bac0018227 Haloferax sp. Atlit-4N Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-4N 2077206 PSYY00000000.1 Bac0018228 Nocardia nova strain MDA3139 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia nova 37330 PSZC00000000.1 Bac0018229 Nocardia nova strain BAA2227 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia nova 37330 PSZD00000000.1 Bac0018230 Aeromonas salmonicida strain AJ83 "Aeromonas salmonicida strain AJ83 is a Gram-negative, rod-shaped bacterium that functions as a heterotroph, utilizing organic compounds as its energy source. This microbe is predominantly found in aquatic environments, indicating its adaptation to a water-based habitat. As a facultative anaerobe, A. salmonicida strain AJ83 possesses the metabolic versatility to thrive in both oxygen-rich and oxygen-poor conditions, allowing it to exploit a range of ecological niches within aquatic ecosystems.↵↵The ecological role of Aeromonas salmonicida strain AJ83 may extend beyond its metabolic capabilities, as it is likely involved in the decomposition of organic matter in its aquatic habitat, contributing to nutrient cycling. Furthermore, the presence of this strain in various water bodies may influence the microbial community structure, potentially affecting interactions with other microorganisms and aquatic organisms. The adaptability of A. salmonicida strain AJ83 to varying oxygen levels suggests its potential resilience in fluctuating environmental conditions, underscoring its ecological significance in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 645 PSZI00000000.1 Bac0018231 Aeromonas salmonicida strain A308 "Aeromonas salmonicida strain A308 is a Gram-negative, rod-shaped bacterium that exhibits heterotrophic metabolism, utilizing organic compounds as its energy source. This strain is typically found in aquatic environments, where it thrives as a facultative anaerobe, allowing it to survive in both oxygen-rich and oxygen-poor conditions. The ability to adapt to varying levels of oxygen availability suggests a versatile ecological role within its habitat, potentially influencing nutrient cycling and interactions with other microbial communities.↵↵The facultative anaerobic nature of A. salmonicida strain A308 enables it to exploit a range of ecological niches, particularly in freshwater environments where oxygen levels can fluctuate. This adaptability may contribute to its persistence and competitiveness in diverse aquatic systems. Understanding the physiological traits of this strain can provide insights into its ecological functions and interactions within its habitat, potentially highlighting its role in the dynamics of aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida Negative Rod Yes 1 2 Facultative anaerobe Heterotroph Mesophilic Aquatic Free living 645 PSZJ00000000.1 Bac0018232 Apibacter sp. wkB309 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Apibacter Apibacter sp. wkB309 1679467 PSZL00000000.1 Bac0018233 Apibacter adventoris strain wkB301 "Apibacter adventoris strain wkB301 is a Gram-negative, rod-shaped bacterium that thrives under microaerophilic conditions, with an optimal growth temperature of 32.0°C. As a member of the genus Apibacter, this strain is characterized by its adaptation to low-oxygen environments, which is typical for many bacteria associated with specific ecological niches, including those found in association with insects, particularly bees.↵↵The rod shape of Apibacter adventoris strain wkB301 suggests it may possess a flexible metabolism that allows it to engage in various biochemical processes. While specific metabolic pathways have not been detailed, the strain's microaerophilic nature indicates it may rely on fermentation or other oxygen-limited metabolic pathways to survive and proliferate. Its optimal growth temperature aligns with the environmental conditions of many habitats inhabited by its potential hosts, which could include the microbiomes of certain insects.↵↵The presence of Apibacter adventoris strain wkB301 in these specific environments may play a role in the microbial community dynamics, potentially contributing to the health and maintenance of its host organisms. This strain's ability to thrive in microaerophilic conditions at a moderate temperature may suggest a specialized ecological role, potentially influencing nutrient cycling or host interactions in its native habitat, highlighting the intricate relationships that exist within microbial communities." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Apibacter Apibacter adventoris Gram-negative rod non-motile microaerophile 32 mesophilic 1679466 PSZM00000000.1 Bac0018234 Marinobacter persicus strain UTICA-S1B9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter persicus 930118 PTIU00000000.1 Bac0018235 Actinokineospora auranticolor strain YU 961-1 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora auranticolor 155976 PTIX00000000.1 Bac0018236 Kineococcus xinjiangensis strain DSM 22857 "Kineococcus xinjiangensis strain DSM 22857 is a Gram-positive, spherical bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 37.0 °C. This strain is characterized by its non-spore-forming nature, which may influence its survival strategies in various environments. ↵↵The spherical morphology of K. xinjiangensis suggests potential adaptability to nutrient-rich environments, where such shapes can facilitate efficient nutrient uptake and cellular interactions. Given its aerobic requirements, this microbe likely plays a role in environments with sufficient oxygen availability, potentially contributing to the cycling of organic matter where aerobic processes are predominant.↵↵Additionally, the optimal growth temperature of 37.0 °C aligns with the conditions found in many warm-blooded organisms, hinting at a possible association with such habitats. This could suggest that Kineococcus xinjiangensis may be involved in specific ecological niches where aerobic degradation of organic compounds occurs, possibly influencing microbial community dynamics.↵↵Understanding the traits of Kineococcus xinjiangensis strain DSM 22857 provides insights into its potential ecological roles and emphasizes the importance of temperature and oxygen in the life strategies of Gram-positive bacteria within microbial ecosystems." Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Kineococcus Kineococcus xinjiangensis Gram-positive sphere aerobic 37 mesophilic non-spore-forming 512762 PTJD00000000.1 Bac0018237 Nonlabens xylanidelens strain DSM 16809 "Nonlabens xylanidelens strain DSM 16809 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 16.0°C, indicating its potential preference for cooler environments. As a member of the microbial community, Nonlabens xylanidelens may contribute to the breakdown of xylan, a major component of plant hemicellulose, thereby playing a role in organic matter decomposition and nutrient cycling in its habitat.↵↵The aerobic nature of this organism suggests it relies on oxygen for its metabolic processes, which may influence its ecological niche, particularly in oxygen-rich environments. Given its specific thermal preference, Nonlabens xylanidelens could be particularly relevant in cold aquatic systems or regions with cooler climates, where it may interact with other microorganisms in the degradation of plant materials. Understanding the metabolic capabilities of this strain can provide insights into its potential applications in biotechnological processes aimed at lignocellulosic biomass utilization." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Nonlabens Nonlabens xylanidelens Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 191564 PTJE00000000.1 Bac0018238 Paenibacillus peoriae strain IBSD35 419 "Paenibacillus peoriae strain IBSD35 419 is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is primarily found in the rhizosphere, specifically within rhizosphere soil associated with wheat, indicating its potential role in plant-microbe interactions and soil health.↵↵As a member of the diverse Paenibacillus genus, strain IBSD35 419 is likely involved in various soil processes that could influence nutrient cycling and plant growth. The presence of this strain in the wheat rhizosphere suggests it may contribute beneficially to the root environment, possibly enhancing nutrient availability or suppressing phytopathogens through competitive exclusion or the production of antimicrobial compounds. ↵↵The facultative anaerobic nature of this bacterium allows it to thrive in varying oxygen conditions, which is advantageous for survival in the dynamic soil environment. This adaptability may enable strain IBSD35 419 to play a significant role in maintaining soil microbiome diversity and functionality, particularly in agricultural settings where wheat is cultivated.↵↵Overall, the specific traits of Paenibacillus peoriae strain IBSD35 419 suggest that it might be a valuable component of the soil microbiome, with potential implications for sustainable agriculture and soil health management. Further investigation into its interactions within the wheat rhizosphere could provide deeper insights into its ecological functions and contributions to plant health." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus peoriae positive Rod Yes 1 facultative anaerobe rhizosphere; rhizosphere soil; soil; wheat rhizosphere 59893 PTJM00000000.1 Bac0018239 Alphaproteobacteria bacterium MarineAlpha12_Bin1 CFH42_12 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MarineAlpha12_Bin1 2013107 PTJY00000000.1 Bac0018240 Alphaproteobacteria bacterium MarineAlpha6_Bin5 CFH27_15 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MarineAlpha6_Bin5 2013092 PTKN00000000.1 Bac0018241 Alphaproteobacteria bacterium MarineAlpha3_Bin6 CFH07_179 Pseudomonadati Pseudomonadota Alphaproteobacteria Alphaproteobacteria bacterium MarineAlpha3_Bin6 2013072 PTLH00000000.1 Bac0018242 Ectopseudomonas oleovorans strain YKJ "Ectopseudomonas oleovorans strain YKJ is a Gram-negative, rod-shaped bacterium characterized by its chemoheterotrophic metabolism and aerobic respiration. This strain thrives optimally at a temperature of 30.0°C, indicating a preference for moderate thermal environments. Notably, E. oleovorans strain YKJ does not undergo sporulation, which may influence its survival strategies in various habitats.↵↵The broad habitat range of E. oleovorans strain YKJ suggests adaptability to diverse environmental conditions, potentially allowing it to exploit different ecological niches. As an aerobe, this strain requires oxygen for growth, which positions it within environments where aerobic processes prevail, such as soil or water bodies rich in organic matter.↵↵Overall, the traits of Ectopseudomonas oleovorans strain YKJ highlight its ecological versatility and potential role in biogeochemical cycles, particularly in the degradation of organic compounds. Understanding its metabolic capabilities may provide insights into its application in bioremediation or other biotechnological processes, where its ability to utilize various organic substrates could be harnessed for environmental restoration efforts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas oleovorans Negative Rod Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 301 PTLV00000000.1 Bac0018243 Escherichia coli strain YH17148 "Escherichia coli strain YH17148 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of many host organisms, suggesting its adaptation to a host-associated habitat. E. coli strains, including YH17148, are known to exhibit facultative anaerobic metabolism, allowing them to grow in both the presence and absence of oxygen. ↵↵The host-associated habitat indicates that E. coli strain YH17148 is likely to be found in environments directly related to its hosts, such as the gastrointestinal tract of mammals. This relationship is essential for its survival and potential interactions within the host's microbiome. The ability to thrive in varying oxygen conditions may confer advantages in fluctuating environments encountered within host systems, such as during periods of hypoxia or in dense microbial communities.↵↵Understanding the traits of E. coli strain YH17148 contributes to our broader knowledge of microbial ecology and the dynamics of host-associated microbial populations. Future studies may reveal how this strain interacts with other microbial species in its habitat, influencing nutrient cycling and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PTNJ00000000.1 Bac0018244 Escherichia coli strain XJ_F8_1 "Escherichia coli strain XJ_F8_1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is characteristic of many E. coli strains. Its optimal growth temperature is 37.0 °C, aligning with the typical human body temperature, suggesting an adaptation to host-associated habitats.↵↵E. coli is widely recognized for its versatile metabolic capabilities, which enable it to utilize a variety of substrates. The host-associated habitat of strain XJ_F8_1 implies a close ecological relationship with its host organism, potentially contributing to the microbial community within the intestinal microbiota. This interaction may play a role in nutrient absorption and immune system modulation. ↵↵Understanding the specific growth conditions and environmental preferences of E. coli strain XJ_F8_1 can provide insights into its ecological role and potential applications in biotechnology or medicine. Further exploration of its interactions within the host environment may reveal its contributions to microbial diversity and stability in gut ecosystems. This highlights the importance of studying individual strains to appreciate their unique roles within broader microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PTNY00000000.1 Bac0018245 Escherichia coli strain JL_F20_1 "Escherichia coli strain JL_F20_1 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the human body temperature, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, strain JL_F20_1 has the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to thrive in various niches within the host.↵↵This strain's Gram-negative classification suggests the presence of a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can play a role in its interactions with the host's immune system. The rod shape and specific cell arrangement may facilitate motility and colonization within the host environment, enhancing its ability to occupy ecological niches.↵↵The association of Escherichia coli with host organisms highlights its potential role in the microbiota, where it may contribute to various physiological processes, including nutrient absorption and immune modulation. Understanding the traits of strain JL_F20_1 may provide insights into its specific ecological roles and interactions within the complex microbial communities associated with its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PTOJ00000000.1 Bac0018246 Glaesserella australis strain HS4635 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella australis 2094024 PTPX00000000.1 Bac0018247 Cloacibacterium normanense strain IMET F Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cloacibacterium Cloacibacterium normanense 237258 PTPZ00000000.1 Bac0018248 Rhodoferax sp. TS-BS-61-7 TS-BS-61-7-C14 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sp. TS-BS-61-7 2094194 PTQY00000000.1 Bac0018249 Amnimonas aquatica strain HR-E HR-E_386 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Amnimonas Amnimonas aquatica 2094561 PTQZ00000000.1 Bac0018250 Brucella oryzae strain OA447 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella oryzae 335286 PTRC00000000.1 Bac0018251 Streptococcus pseudopneumoniae strain Spain3473 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 257758 PTTJ00000000.1 Bac0018252 Streptococcus pseudopneumoniae strain EL2652N1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 257758 PTTL00000000.1 Bac0018253 Enterococcus faecium strain CVM N59891F "Enterococcus faecium strain CVM N59891F is a Gram-positive coccus that thrives in fermented mare milk, exhibiting facultative anaerobic growth characteristics. This strain, belonging to the Enterococcus genus, is notable for its ability to adapt to both aerobic and anaerobic environments, a trait that enhances its survival in diverse habitats. ↵↵Enterococcus faecium is known for its resilience and can tolerate various environmental conditions, which may contribute to its presence in fermented dairy products. The fermentation process in mare milk not only influences the microbial community but also affects the nutritional profile of the product, potentially enhancing the health benefits associated with its consumption.↵↵The ecological role of Enterococcus faecium strain CVM N59891F in fermented mare milk is significant, as it may contribute to the development of flavor and texture in this traditional food product. Additionally, the strain's presence in this specific habitat underscores the importance of microbial diversity in dairy fermentation processes. Understanding the traits and behaviors of such strains can provide insights into the broader implications of microbial interactions in food systems and their potential contributions to food safety and quality." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 PTVN00000000.1 Bac0018254 Enterococcus mundtii strain CVM N55263 "Enterococcus mundtii strain CVM N55263 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, which aligns with its ability to inhabit diverse environments.↵↵This strain is part of the Enterococcus genus, which is known for its resilience in various habitats, including both human-associated and environmental settings. The facultative anaerobic nature of E. mundtii strain CVM N55263 enables it to adapt to fluctuating oxygen levels, allowing it to proliferate in both aerobic and anaerobic conditions. Such versatility in oxygen requirement suggests that this strain could play significant roles in various ecological niches, contributing to nutrient cycling and microbial community dynamics.↵↵The adaptability of Enterococcus mundtii strain CVM N55263 to multiple habitats may also hint at its utility in biotechnological applications, particularly in fermentation processes or as a probiotic candidate, although these applications require further investigation to fully elucidate their potential. Understanding the ecological roles of this strain can provide insights into its contributions to microbial diversity and function in different environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus mundtii positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 53346 PUAP00000000.1 Bac0018255 Enterococcus faecium strain CVM N55290 "Enterococcus faecium strain CVM N55290 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic characteristics, allowing it to adapt to varying oxygen levels within its environment. The cocci shape of E. faecium is typical of the Enterococcus genus, which is known for its resilience and ability to survive in diverse ecological niches.↵↵The fermentation process of mare milk, a traditional practice in certain cultures, supports the growth of E. faecium, where it may play a role in the development of flavor and preservation of the fermented product. The presence of this strain in fermented mare milk highlights its potential importance in dairy microbiology, particularly in the context of probiotic applications and fermentation technology.↵↵Understanding the specific attributes of Enterococcus faecium strain CVM N55290 not only sheds light on its potential utility in food production but also emphasizes the adaptability of microorganisms to specialized environments. The ability to thrive in fermented substrates could suggest that this strain may contribute positively to the microbial diversity of dairy ecosystems, potentially influencing the overall quality and safety of fermented products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 PUAT00000000.1 Bac0018256 Duncaniella muris strain DSM 103720 seq82 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Duncaniella Duncaniella muris gut 2094150 PUEC00000000.1 Bac0018257 Labrys okinawensis strain RP1T "Labrys okinawensis strain RP1T is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic respiration and thrives optimally at a temperature of 25.0°C. This strain, characterized by its rod-like morphology, is part of a broader group of microbes that display a diverse range of metabolic capabilities, although specific metabolic pathways for strain RP1T have not been detailed in the available data. ↵↵As a Gram-negative organism, Labrys okinawensis strain RP1T possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for its classification and may influence its interaction with the environment as well as its susceptibility to certain antibiotics. The aerobic nature of this strain indicates that it relies on oxygen for growth and energy production, positioning it in ecosystems where oxygen is readily available.↵↵The optimal growth temperature of 25.0°C suggests that Labrys okinawensis strain RP1T is well-adapted to moderate environmental conditions, potentially making it a candidate for further study in relation to its role in temperate ecosystems. This adaptability may also provide insights into its physiological mechanisms for survival in fluctuating thermal environments, contributing to our understanding of microbial resilience in changing climates." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Labrys Labrys okinawensis Gram-negative rod aerobic 25 mesophilic non-spore-forming 346911 PUEJ00000000.1 Bac0018258 Mycolicibacter virginiensis strain GF75 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter virginiensis 1795032 PUEV00000000.1 Bac0018259 Lactobacillus delbrueckii subsp. jakobsenii strain DSM 26046 601 "Lactobacillus delbrueckii subsp. jakobsenii strain DSM 26046 601 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 42.0°C, indicating a potential preference for warmer habitats, which may be associated with specific ecological niches.↵↵The habitat of L. delbrueckii subsp. jakobsenii is diverse, suggesting that this strain may be adaptable to various environments, including those found in fermentation processes and possibly in the gastrointestinal tracts of certain animals. Given its chain-forming characteristic, this strain may exhibit synergistic interactions within microbial communities, potentially influencing fermentation dynamics or nutrient cycling in its habitat.↵↵The ability to thrive at elevated temperatures could also imply a role in specific biotechnological applications, particularly in the production of fermented foods at higher temperatures. Understanding the ecological versatility and adaptive mechanisms of L. delbrueckii subsp. jakobsenii strain DSM 26046 601 may provide insights into its potential uses in the food industry, particularly in the development of probiotic products or in novel fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1537158 PUFG00000000.1 Bac0018260 Lentilactobacillus parakefiri strain DSM 10551 795 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus parakefiri 152332 PUFL00000000.1 Bac0018261 Solimicrobium silvestre strain S20-91 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Solimicrobium Solimicrobium silvestre 2099400 PUGF00000000.1 Bac0018262 Blastopirellula marina strain Nap-Phe MGV Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Blastopirellula Blastopirellula marina 124 PUHZ00000000.1 Bac0018263 Burkholderia cepacia strain Y14-15 "Burkholderia cepacia strain Y14-15 is a Gram-negative bacterium characterized as a microaerophile, indicating its requirement for reduced oxygen levels for optimal growth. This strain belongs to the Burkholderia genus, which is known for its metabolic versatility and ability to thrive in diverse environments. ↵↵As a microaerophilic organism, B. cepacia strain Y14-15 may exhibit unique adaptations that allow it to survive in habitats where oxygen concentrations are lower than atmospheric levels, such as waterlogged soils or certain plant root zones. This trait may contribute to its ecological role in nutrient cycling and interactions with plant roots, potentially affecting plant health and soil microbiome dynamics.↵↵The Gram-negative nature of B. cepacia strain Y14-15 suggests a complex cell wall structure, which may include an outer membrane that provides protection from environmental stresses and influences its interaction with other microorganisms. This structural characteristic is typical of many bacteria within the Burkholderia genus, often allowing them to engage in competitive and cooperative interactions in their respective niches.↵↵Overall, the physiological traits of Burkholderia cepacia strain Y14-15, particularly its microaerophilic requirement, may enable it to occupy specific ecological niches that are less accessible to strictly aerobic or anaerobic organisms, thereby playing a crucial role in microbial community dynamics within its environment." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 PUIQ00000000.1 Bac0018264 Methylosinus sporium strain DSM 17706 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylosinus Methylosinus sporium 428 PUIV00000000.1 Bac0018265 Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus khanii 2100166 PUJY00000000.1 Bac0018266 Escherichia coli strain NCDC 62-57 NalR-Br23R2 "Escherichia coli strain NCDC 62-57 NalR-Br23R2 is a Gram-negative, rod-shaped bacterium primarily found in host-associated environments. This strain exhibits a versatile oxygen requirement, functioning as a facultative anaerobe, which allows it to thrive in both aerobic and anaerobic conditions. Under optimal conditions, specifically at a temperature of 37.0°C, E. coli NCDC 62-57 NalR-Br23R2 can proliferate effectively, reflecting its adaptation to the warm-blooded hosts it is typically associated with.↵↵The cellular arrangement of this strain is characterized by the presence of both single cells and pairs, a trait that may influence its interaction with the host environment and other microbial communities. The ability to form pairs may enhance its survival and colonization capabilities within host tissues, facilitating communication and resource acquisition among cells.↵↵The ecological significance of E. coli NCDC 62-57 NalR-Br23R2 lies in its potential role within the microbiota of its host, contributing to metabolic processes and possibly influencing the host's health and homeostasis. Its facultative anaerobic metabolism may also provide insights into its adaptability to varying oxygen levels within different host microenvironments, highlighting the dynamic nature of bacterial life in association with living organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PUQC00000000.1 Bac0018267 Escherichia coli strain GER_MD14_1505_Eco_038 "Escherichia coli strain GER_MD14_1505_Eco_038 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the human body temperature, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, GER_MD14_1505_Eco_038 possesses the metabolic flexibility to grow in both aerobic and anaerobic conditions, allowing it to colonize diverse niches within its host environment.↵↵The host-associated nature of this strain indicates a potential symbiotic relationship with the host, where it may play roles in nutrient metabolism or gut homeostasis, though the specific functions and interactions remain to be elucidated. Its ability to thrive in varying oxygen levels may facilitate its survival in different regions of the host, such as the intestines, where oxygen availability can fluctuate significantly. The unique traits of E. coli strain GER_MD14_1505_Eco_038 underscore its potential ecological significance within the microbiota, particularly in relation to its adaptability and resilience in fluctuating environmental conditions within a host. Further investigation is warranted to explore its specific interactions and contributions to host health and microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PUSI00000000.1 Bac0018268 Spiroplasma sp. ChiS Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. ChiS 2099885 PUUH00000000.1 Bac0018269 Photorhabdus hindustanensis strain H1 H1_REP_C679 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus hindustanensis 2918802 PUWT00000000.1 Bac0018270 Photorhabdus luminescens strain H5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus luminescens 29488 PUWW00000000.1 Bac0018271 Limosilactobacillus reuteri strain 2010 "Limosilactobacillus reuteri strain 2010 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. L. reuteri strain 2010 is versatile in its habitat, being found in multiple ecological niches, which may include both the gastrointestinal tracts of animals and various fermented foods.↵↵The ability of L. reuteri strain 2010 to grow under varying oxygen conditions suggests a metabolic flexibility that may contribute to its ecological success. Furthermore, its chain arrangement could play a role in its colonization ability and interactions with other microbial communities in its habitats. Understanding the specific environments where this strain is prevalent may offer insights into its functional contributions to microbial diversity and ecosystem dynamics, particularly in contexts where fermentation processes are critical." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 PUXG00000000.1 Bac0018272 Sphingobacterium haloxyli strain 5JN-11 ZB100074 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium haloxyli 2100533 PVBQ00000000.1 Bac0018273 Burkholderia multivorans strain AU11358 "Burkholderia multivorans strain AU11358 is a nonsporulating, rod-shaped, Gram-negative bacterium that exhibits aerobic respiration. This strain is associated with host environments, indicating a potential symbiotic or pathogenic relationship with its host organisms. The Gram-negative nature of B. multivorans is characterized by its thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interaction with host immune responses.↵↵As an aerobe, B. multivorans strain AU11358 requires oxygen for growth, suggesting that it thrives in environments where oxygen is readily available. This trait is important for its metabolic activities and may influence its ecological niche within host-associated habitats. The absence of sporulation indicates that this strain relies on other survival strategies in adverse conditions, potentially forming biofilms or engaging in other forms of cellular adaptation.↵↵Understanding the traits of Burkholderia multivorans strain AU11358 contributes to the broader knowledge of the Burkholderia genus, which is known for its diverse metabolic capabilities and ecological versatility. The association of this strain with host environments highlights its potential role in microbial communities, where it may influence host health or contribute to the dynamics of microbial interactions. Further study could elucidate the specific ecological functions and interactions of this strain within its host, providing insights into the complexities of host-microbe relationships." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 87883 PVFM00000000.1 Bac0018274 Burkholderia multivorans strain AU19729 "Burkholderia multivorans strain AU19729 is a Gram-negative, non-sporulating rod that exhibits aerobic metabolic capabilities. This strain is primarily associated with host environments, highlighting its potential role in symbiotic or pathogenic relationships within various biological systems. As an aerobe, B. multivorans strain AU19729 requires oxygen for growth and metabolic processes, which is characteristic of many members within the Burkholderia genus.↵↵The rod-shaped morphology of this strain contributes to its adaptability in diverse ecological niches, particularly in association with hosts. The host-associated habitat suggests that B. multivorans strain AU19729 may interact closely with eukaryotic organisms, potentially influencing host health or contributing to host-associated microbial communities.↵↵Further investigation into B. multivorans strain AU19729 could reveal insights into its ecological roles, particularly in how it may compete with or complement other microorganisms in host-associated environments. Understanding its interactions within these complex ecosystems could provide valuable information regarding microbial dynamics and the functional implications of this strain in various ecological contexts." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 87883 PVGH00000000.1 Bac0018275 Burkholderia ambifaria strain AU20319 "Burkholderia ambifaria strain AU20319 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic metabolism and nonsporulating nature. This strain exhibits optimal growth at a temperature of 30.0°C, indicating a preference for moderate thermal conditions that may be typical of various ecological niches it inhabits. The ability to grow in multiple habitats suggests that B. ambifaria AU20319 is adaptable, potentially thriving in diverse environments where it can utilize various organic substrates.↵↵As a facultative aerobe, this strain can grow in both the presence and absence of oxygen, which may confer a competitive advantage in fluctuating environmental conditions. This metabolic flexibility allows B. ambifaria AU20319 to occupy a range of ecological roles, possibly including those related to nutrient cycling in its habitats. ↵↵Given its traits, Burkholderia ambifaria strain AU20319 may play a significant role in microbial communities, particularly in environments where organic matter is abundant and oxygen levels can vary. Its nonsporulating nature further suggests that it may rely on rapid growth and reproduction strategies in favorable conditions rather than forming spores for survival during adverse conditions. This adaptability may position it as a key player in the dynamics of microbial interactions within its ecological niches." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ambifaria Negative Rod No 1 2 Facultative aerobe 30 Mesophilic Multiple Free living Nonsporulating 152480 PVGI00000000.1 Bac0018276 Actinoplanes italicus strain DSM 43146 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes italicus 29 mesophilic non-spore-forming 113567 PVMZ00000000.1 Bac0018277 Nonomuraea fuscirosea strain CGMCC 4.7104 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea fuscirosea 1291556 PVNG00000000.1 Bac0018278 Bacillus sp. M21 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. M21 1155617 PVNJ00000000.1 Bac0018279 Enhygromyxa salina strain SWB005 Pseudomonadati Myxococcota Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa salina 215803 PVNK00000000.1 Bac0018280 Enhygromyxa salina strain SWB007 Pseudomonadati Myxococcota Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa salina 215803 PVNL00000000.1 Bac0018281 Escherichia coli strain BV723 "Escherichia coli strain BV723 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the normal body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli BV723 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that enhances its versatility in various environments within the host.↵↵The facultative anaerobic nature of E. coli BV723 allows it to occupy diverse niches within the host that may differ significantly in oxygen availability. This adaptability can play a crucial role in its survival and function in the gut microbiome, where fluctuating oxygen levels can occur due to metabolic activities of other microorganisms. The presence of E. coli strain BV723 in host-associated environments may influence the overall microbial community structure and function, potentially affecting nutrient cycling and host health. Understanding the specific interactions and roles of this strain within the complex microbial ecosystem of the host can provide valuable insights into its ecological significance and contributions to host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PVOT00000000.1 Bac0018282 Escherichia coli strain B29595 "Escherichia coli strain B29595 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives at an optimal temperature of 37.0°C, which aligns with the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli B29595 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, which is a common trait among many enteric bacteria that inhabit the intestinal tracts of mammals.↵↵The ability of E. coli B29595 to exist in varying oxygen conditions may confer a metabolic advantage in the complex microbial ecosystems of its host, facilitating its survival and growth in fluctuating environments within the gastrointestinal tract. This adaptability not only underscores the organism's versatility but also suggests potential roles in nutrient processing and gut homeostasis. Understanding the specific traits of E. coli B29595 can contribute to the broader knowledge of microbial interactions within host environments and the ecological dynamics of intestinal microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 PVOU00000000.1 Bac0018283 Bacillus atrophaeus strain LSSC3 "Bacillus atrophaeus strain LSSC3 is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in aerobic conditions, primarily inhabiting soil environments. As a member of the Bacillus genus, this strain's ability to form spores is significant for its survival and resilience in various ecological niches, allowing it to endure unfavorable conditions and remain viable over extended periods.↵↵The aerobic nature of Bacillus atrophaeus strain LSSC3 suggests that it plays a crucial role in soil microbiomes where oxygen is available. This characteristic may facilitate its involvement in various biogeochemical processes, such as the decomposition of organic matter and nutrient cycling. Additionally, the presence of this strain in soil ecosystems could contribute to the overall microbial diversity and health of these environments, potentially influencing plant growth and soil quality.↵↵In summary, the unique combination of traits in Bacillus atrophaeus strain LSSC3 highlights its adaptive strategies that enable it to thrive in aerobic soil habitats, positioning it as a key player in soil ecology and microbiology." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus atrophaeus Positive Rod Yes 1 1 Aerobe Mesophilic Soil Free living Sporulating 1452 PVQO00000000.1 Bac0018284 Bacillus pumilus strain LDZX38 "Bacillus pumilus strain LDZX38 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and thrives in terrestrial habitats as an aerobic organism. As a member of the Bacillus genus, this strain is characterized by its capacity to form resilient spores, which enable it to withstand adverse environmental conditions and contribute to its survival in soil ecosystems. The aerobic nature of Bacillus pumilus strain LDZX38 indicates its reliance on oxygen for metabolism, positioning it within the broader context of soil microbiota that play crucial roles in nutrient cycling and organic matter decomposition.↵↵The ecological significance of Bacillus pumilus strain LDZX38 may extend to its interactions with other soil microorganisms and its potential contributions to soil health. Its sporulation capability suggests a strategic adaptation for persistence in fluctuating environments, allowing it to endure periods of nutrient limitation or desiccation. This resilience, coupled with its aerobic metabolism, underscores its potential role in maintaining the balance of microbial communities within terrestrial ecosystems. Further investigation into this strain could provide insights into its functional roles and applications in agricultural or bioremediation practices, where harnessing such resilient microbial traits could enhance ecosystem sustainability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 PVQV00000000.1 Bac0018285 Bacillus pumilus strain LNTW65 "Bacillus pumilus strain LNTW65 is a Gram-positive, rod-shaped bacterium that exhibits sporulation under suitable conditions and is classified as an aerobe, requiring oxygen for optimal growth. This strain is part of the Bacillus genus, which is known for its ability to form resilient spores that can survive harsh environmental conditions. B. pumilus strains are commonly found in terrestrial habitats, suggesting a potential role in soil ecosystems, where they may contribute to nutrient cycling and organic matter decomposition.↵↵The ability to sporulate allows B. pumilus strain LNTW65 to endure stressors such as desiccation and extreme temperatures, which are typical in terrestrial environments. This resilience is indicative of its potential utility in biotechnological applications, including bioremediation or as a biocontrol agent in agricultural settings. Furthermore, the aerobic nature of this strain suggests that it may engage in interactions with other soil microorganisms that depend on or produce oxygen, thereby influencing community dynamics.↵↵Overall, the ecological role of Bacillus pumilus strain LNTW65 in terrestrial habitats underscores its significance in maintaining soil health and ecosystem function, particularly in environments where oxygen availability is a key factor in microbial activity." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus Positive Rod Yes 1 1 Aerobe Mesophilic Terrestrial Free living Sporulating 1408 PVQX00000000.1 Bac0018286 Bacillus toyonensis strain NMTD92 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus toyonensis 155322 PVRN00000000.1 Bac0018287 Actinopolyspora mortivallis strain M5A Bacillati Actinomycetota Actinomycetes Actinopolysporales Actinopolysporaceae Actinopolyspora Actinopolyspora mortivallis 45 thermophilic 33906 PVSR00000000.1 Bac0018288 Streptococcus anginosus strain OUP21 "Streptococcus anginosus strain OUP21 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and is classified as a chemoheterotroph. This strain thrives optimally at a temperature of 37.0°C, which aligns closely with the average human body temperature, suggesting its adaptation to a host-associated environment. As part of its habitat, S. anginosus strain OUP21 is typically found in the gut of hosts, where it may play a role in the complex microbial community.↵↵The facultative anaerobic nature of this strain allows it to survive and proliferate under both aerobic and anaerobic conditions, providing it with versatility in fluctuating gut oxygen levels. The utilization of organic compounds as an energy source indicates its dependence on the host’s metabolic byproducts, which may facilitate symbiotic relationships within the gut microbiota.↵↵This strain's presence in the host gut microbiome could contribute to the overall microbial diversity and metabolic functions essential for maintaining gut health. Further understanding of its ecological role may reveal insights into its interactions with other gut microbes and its potential influence on host metabolism and immune responses." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating Human 1328 PVSZ00000000.1 Bac0018289 Knoellia remsis strain ATCC BAA-1496 "Knoellia remsis strain ATCC BAA-1496 is a Gram-positive spherical bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a member of the genus Knoellia, this microbe is characterized by its unique morphological and physiological traits, which may contribute to its ecological niche. ↵↵The spherical shape of Knoellia remsis suggests adaptations suited for specific interactions in its environment, potentially influencing its ability to engage in microbial communities. Although further research is necessary to elucidate its ecological roles, the aerobic nature of this strain implies that it may participate in oxygen-dependent biochemical processes. This could include organic matter degradation or nutrient cycling within its habitat.↵↵The absence of sporulation further indicates that this bacterium may rely on alternative survival strategies in fluctuating environments. Its optimal growth temperature of 25.0°C positions it within a range typically associated with mesophilic organisms, which are often found in soil and aquatic environments. Understanding the traits of Knoellia remsis may provide insights into the adaptations and ecological functions of Gram-positive, non-spore-forming bacteria in their respective ecosystems." Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Knoellia Knoellia remsis Gram-positive sphere non-motile aerobic 25 mesophilic non-spore-forming 407159 PVTI00000000.1 Bac0018290 Glycomyces artemisiae strain CGMCC 4.7067 Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces artemisiae 1076443 PVTJ00000000.1 Bac0018291 Vreelandella songnenensis strain CGMCC 1.12152 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella songnenensis 1176243 PVTK00000000.1 Bac0018292 Alkalibacterium olivapovliticus strain DSM 13175 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Alkalibacterium Alkalibacterium olivapovliticus 99907 PVTO00000000.1 Bac0018293 Yoonia maritima strain DSM 101533 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Yoonia Yoonia maritima 1435347 PVTP00000000.1 Bac0018294 Donghicola tyrosinivorans strain DSM 100212 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Donghicola Donghicola tyrosinivorans 1652492 PVTQ00000000.1 Bac0018295 Mongoliibacter ruber strain DSM 27929 "Mongoliibacter ruber strain DSM 27929 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and requires aerobic conditions for growth. This microbe's Gram-negative status indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its environmental resilience and interactions with other microbial communities. ↵↵As a rod-shaped organism, M. ruber may exhibit a range of morphologies depending on growth conditions, which can influence its ecological roles and interactions within its habitat. The optimal growth temperature of 25.0°C suggests that this strain is well-suited for environments such as soil or aquatic systems, where temperatures typically fluctuate around this range. ↵↵The aerobic requirement highlights its dependence on oxygen for metabolic processes, positioning M. ruber within environments rich in oxygen, potentially impacting nutrient cycling and organic matter decomposition. The ecological niche of M. ruber may involve interactions with other aerobic microorganisms, contributing to the overall diversity and functionality of microbial communities. Understanding the specific metabolic pathways and interactions of M. ruber could provide insights into its role in biogeochemical cycles, particularly in environments where oxygen is readily available." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Mongoliibacter Mongoliibacter ruber Gram-negative rod non-motile aerobic 25 mesophilic 1750599 PVTR00000000.1 Bac0018296 Hasllibacter halocynthiae strain DSM 29318 "Hasllibacter halocynthiae strain DSM 29318 is a Gram-negative, ovoid-shaped bacterium that demonstrates optimal growth at 25.0°C and requires aerobic conditions for metabolism. This strain is part of the growing interest in microorganisms adapted to specific environmental niches, particularly those found in marine ecosystems. The Gram-negative cell wall structure of H. halocynthiae suggests a complex membrane composition that may confer specific advantages in its habitat, influencing its interactions with surrounding microbial communities and abiotic factors.↵↵The ovoid morphology of H. halocynthiae could be indicative of its ecological role, potentially influencing its buoyancy and nutrient acquisition strategies in aquatic environments. Although the specific ecological functions and interactions of this strain are not detailed, the combination of its aerobic nature and optimal growth temperature suggests a potential affinity for surface waters or regions with sufficient oxygenation, where it may participate in carbon and nutrient cycling.↵↵Overall, the traits of Hasllibacter halocynthiae strain DSM 29318 highlight its adaptability to marine conditions and underscore the importance of understanding such microbes in the context of ecosystem dynamics and environmental microbiology. Further research could elucidate its specific ecological roles and contributions to marine biogeochemical processes." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Hasllibacter Hasllibacter halocynthiae Gram-negative ovoid aerobic 25 mesophilic 595589 PVTT00000000.1 Bac0018297 Jezberella montanilacus strain MWH-P2sevCIIIb Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Jezberella Jezberella montanilacus 323426 PVTV00000000.1 Bac0018298 Isoptericola sp. CG 20/1183 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Isoptericola Isoptericola sp. CG 20/1183 1881052 PVTW00000000.1 Bac0018299 Laceyella sediminis strain RHA1 "Laceyella sediminis strain RHA1 is a Gram-positive, aerobic bacterium that exhibits the ability to form spores, enabling it to withstand adverse environmental conditions. This strain thrives optimally at a temperature of 45.0°C, suggesting a preference for moderately high thermal environments. ↵↵Being a spore-forming organism, Laceyella sediminis strain RHA1 can enter a dormant state that allows it to survive periods of nutrient limitation and other stressors. The Gram-positive nature of this bacterium is indicative of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in fluctuating conditions. ↵↵The capability of Laceyella sediminis strain RHA1 to grow in aerobic environments implies a reliance on oxygen for its metabolic processes, which may influence its ecological niche, potentially allowing it to inhabit oxygen-rich environments such as sediment layers in thermal springs or other geothermally heated habitats. ↵↵Overall, the specific traits of Laceyella sediminis strain RHA1 highlight its adaptability in extreme environments, positioning it as an organism of interest for studies on microbial survival strategies in high-temperature ecosystems." Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Laceyella Laceyella sediminis Gram-positive non-motile aerobic 45 thermophilic spore-forming 573074 PVTZ00000000.1 Bac0018300 Antricoccus suffuscus strain DSM 100065 Bacillati Actinomycetota Actinomycetes Geodermatophilales Antricoccaceae Antricoccus Antricoccus suffuscus 1629062 PVUE00000000.1 Bac0018301 Tritonibacter scottomollicae strain DSM 25328 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Tritonibacter Tritonibacter scottomollicae 483013 PVUF00000000.1 Bac0018302 Pseudomonas simiae strain 73148/1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas simiae 321846 PVUL00000000.1 Bac0018303 Merismopedia glauca CCAP 1448/3 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Merismopediaceae Merismopedia Merismopedia glauca 1296344 PVWJ00000000.1 Bac0018304 Roseovarius sp. A46 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius sp. A46 2109331 PVWS00000000.1 Bac0018305 Moorella humiferrea strain DSM 23265 "Moorella humiferrea strain DSM 23265 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at a temperature of 45.0°C. As an anaerobic organism, M. humiferrea is adapted to environments devoid of oxygen, which may influence its ecological niche and metabolic processes. ↵↵The Gram-positive nature of this strain indicates a thick peptidoglycan layer in its cell wall, a characteristic that can provide certain advantages in terms of resilience to environmental stressors. The ability to form spores is particularly significant; it allows the bacterium to endure unfavorable conditions, thereby enhancing its survival and potential for colonization in diverse habitats.↵↵Given its optimal growth temperature of 45.0°C, M. humiferrea may be well-suited to thermophilic environments, such as hot springs or geothermal habitats, where elevated temperatures prevail. Such adaptations may allow it to participate in biogeochemical cycles, particularly in the degradation of organic matter in thermophilic ecosystems. The anaerobic requirement further suggests a role in anaerobic fermentation processes, potentially contributing to nutrient recycling in its native habitat.↵↵Overall, Moorella humiferrea strain DSM 23265 exemplifies the complexity of microbial life in extreme environments, showcasing how specific traits enable survival and ecological contributions in anaerobic, thermophilic settings." Bacillati Bacillota Clostridia Neomoorellales Neomoorellaceae Neomoorella Neomoorella humiferrea Gram-positive rod anaerobic 45 thermophilic spore-forming 676965 PVXM00000000.1 Bac0018306 Clostridium thermopalmarium DSM 5974 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium thermopalmarium anaerobic 1121340 PVXN00000000.1 Bac0018307 Clostridium luticellarii strain DSM 29923 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium luticellarii anaerobic 1691940 PVXP00000000.1 Bac0018308 Clostridium vincentii strain DSM 10228 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium vincentii anaerobic 52704 PVXQ00000000.1 Bac0018309 Flagellimonas meridianipacifica strain DSM 25027 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas meridianipacifica 1080225 PVYX00000000.1 Bac0018310 Paraburkholderia sp. BL25I1N1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL25I1N1 1938804 PVZB00000000.1 Bac0018311 Pseudosporangium ferrugineum strain DSM 45348 "Pseudosporangium ferrugineum strain DSM 45348 is a Gram-positive, spore-forming bacterium that requires aerobic conditions for growth. This strain is characterized by its ability to produce spores, which are critical for its survival and dissemination in various environments. As an aerobic organism, P. ferrugineum strain DSM 45348 relies on oxygen for its metabolic processes, which may influence its ecological niches and interactions with other microorganisms.↵↵The Gram-positive nature of this strain suggests that it possesses a thick peptidoglycan layer in its cell wall, a feature that can confer certain advantages in resilience against environmental stresses. The sporulation capability indicates that P. ferrugineum can withstand adverse conditions, such as nutrient limitation or desiccation, potentially allowing it to thrive in diverse habitats.↵↵Given its traits, Pseudosporangium ferrugineum strain DSM 45348 may play a significant role in soil ecosystems or other aerobic environments where it could contribute to nutrient cycling and organic matter decomposition. Its ability to form spores might also facilitate its persistence in fluctuating environmental conditions, underscoring the importance of spore-forming bacteria in ecological stability and resilience." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Pseudosporangium Pseudosporangium ferrugineum Gram-positive aerobic spore-forming 439699 PVZG00000000.1 Bac0018312 Ensifer sp. NM-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer sp. NM-2 2109730 PVZR00000000.1 Bac0018313 Stenotrophomonas maltophilia strain BA27164 "Stenotrophomonas maltophilia strain BA27164 is a Gram-negative, rod-shaped bacterium recognized for its versatility in occupying multiple habitats. This strain is an obligate aerobe, meaning it requires oxygen for growth and metabolism. Its ability to thrive in diverse environments suggests a remarkable adaptability and metabolic flexibility, which may contribute to its survival in various ecological niches.↵↵The rod shape of S. maltophilia BA27164 is characteristic of many bacteria within the family of Xanthomonadaceae, which often inhabit soil and water environments, although this strain's specific ecological interactions have not been detailed. The organism's Gram-negative cell wall structure, consisting of a thin peptidoglycan layer surrounded by an outer membrane, may confer advantages such as resistance to certain antibiotics and environmental stresses.↵↵Given the known traits, Stenotrophomonas maltophilia strain BA27164 exemplifies a microbe that could play a significant role in biogeochemical cycles, particularly in nutrient cycling within its habitats. Its aerobic nature suggests an involvement in processes that require oxygen, such as the degradation of organic matter, highlighting its potential contribution to ecosystem dynamics. Further studies could elucidate the specific roles this strain plays within its environments and its interactions with other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 PXIL00000000.1 Bac0018314 Acinetobacter radioresistens strain A154 "Acinetobacter radioresistens strain A154 is a Gram-negative, aerobic bacterium distinguished by its resilience to ionizing radiation. This strain, part of the Acinetobacter genus, has garnered attention due to its unique survival capabilities in environments with high radiation levels, which may be attributed to specific DNA repair mechanisms. As an aerobic organism, A. radioresistens strain A154 requires oxygen for growth and metabolism, positioning it within environments where oxygen is readily available.↵↵The Gram-negative nature of this strain implies a complex cell wall structure characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural configuration not only contributes to its resilience but also may play a role in its interactions with various substrates in its environment. ↵↵Given its capacity to thrive in oxygen-rich conditions alongside its radiation resistance, A. radioresistens strain A154 may serve as a model organism for studies focused on microbial survival strategies in extreme environments. Additionally, its properties could provide insights into bioremediation applications, particularly in contaminated sites where radiation exposure is prevalent. Understanding the metabolic pathways and stress response mechanisms of this strain could reveal novel approaches to harnessing its capabilities for environmental or biotechnological purposes." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter radioresistens Negative Aerobe 40216 PXJD00000000.1 Bac0018315 Marinobacter halophilus strain JCM 30472 361 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter halophilus 1323740 PXNN00000000.1 Bac0018316 Paracoccus methylarcula strain VKM B-2159 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus methylarcula 72022 PXNQ00000000.2 Bac0018317 Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris strain Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mesoflavibacter Mesoflavibacter zeaxanthinifaciens 1520893 PXOT00000000.1 Bac0018318 Cyanobacteria bacterium SW_9_44_58 Bacillati Cyanobacteriota Cyanobacteria bacterium SW_9_44_58 1919144 PXPI00000000.1 Bac0018319 Halobacteriales archaeon QS_8_65_32 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriales archaeon QS_8_65_32 1919186 PXRY00000000.1 Bac0018320 Burkholderia sp. Nafp2/4-1b Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Nafp2/4-1b 2116686 PXXL00000000.1 Bac0018321 Cyanobium usitatum str. Tous CaCyanobiumglobalisTous-C25 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Cyanobium Cyanobium usitatum 2116684 PXXO00000000.1 Bac0018322 Sphingobacteriales bacterium UPWRP_1 695 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriales bacterium UPWRP_1 2116516 PXYE00000000.1 Bac0018323 Zobellella endophytica strain 59N8 ZB100060 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Zobellella Zobellella endophytica 2116700 PXYG00000000.1 Bac0018324 Mesorhizobium ephedrae strain 6GN-30 ZB100116 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Kumtagia Kumtagia ephedrae 2116701 PXYK00000000.1 Bac0018325 Candidatus Arcticimaribacter sp. Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Candidatus Arcticimaribacter Candidatus Arcticimaribacter sp. 2953871 PXYQ00000000.1 Bac0018326 Neisseria iguanae strain ATCC 51483 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria iguanae 90242 PXYY00000000.1 Bac0018327 Brevibacillus sp. NRRL NRS-603 N603_188 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus sp. NRRL NRS-603 2126351 PXZN00000000.1 Bac0018328 Variovorax sp. WS11 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. WS11 1105204 PXZZ00000000.1 Bac0018329 Micromonospora saelicesensis strain PSN13 369.PSN13.3_41 "Micromonospora saelicesensis strain PSN13 369.PSN13.3_41 is a Gram-positive, aerobic bacterium known for its spore-forming ability. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. Its Gram-positive nature suggests a thick peptidoglycan layer in the cell wall, which may contribute to its resilience in various ecological niches.↵↵As a member of the genus Micromonospora, this strain is likely to play a role in soil and decaying organic matter, where it can utilize available nutrients and contribute to the decomposition process. The capability of sporulation allows M. saelicesensis strain PSN13 to survive adverse environmental conditions, which is a significant aspect of its life cycle and ecological strategy. ↵↵The ability to form spores is particularly advantageous in fluctuating environments, enabling the strain to endure periods of nutrient scarcity or unfavorable temperature conditions. This trait may also facilitate its dispersal and colonization of new habitats, potentially influencing microbial community dynamics in the environments it inhabits. Overall, the combination of aerobic metabolism, optimal growth at moderate temperatures, and spore formation highlights the ecological adaptations of M. saelicesensis strain PSN13 in nutrient cycling and ecosystem functioning." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora saelicesensis Gram-positive aerobic 29 mesophilic spore-forming 285676 PYAG00000000.1 Bac0018330 Achromobacter aloeverae strain AVA-1 "Achromobacter aloeverae strain AVA-1 is a Gram-negative, non-spore-forming rod that exhibits aerobic metabolic characteristics and thrives optimally at a temperature of 32.0°C. As part of the Achromobacter genus, this strain is characterized by its rod-shaped morphology, which is typical of many members within this diverse group of bacteria.↵↵The Gram-negative nature of A. aloeverae strain AVA-1 indicates that it possesses a unique cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. These structural features can influence its interactions with the environment and other microorganisms, potentially affecting its ecological niche.↵↵The aerobic requirement of this strain suggests a reliance on oxygen for its metabolic processes, which may limit its habitat to well-oxygenated environments. The optimal growth temperature of 32.0°C positions A. aloeverae strain AVA-1 within a range that is compatible with many mesophilic organisms, potentially allowing it to thrive in moderate thermal conditions often found in natural and anthropogenic settings.↵↵Understanding the traits of Achromobacter aloeverae strain AVA-1 can provide insights into its potential roles in various ecosystems, including its interactions with plants or other microbes. Given its name, there may be implications for its association with Aloe species, possibly suggesting a symbiotic relationship or a role in the plant's microbiome that warrants further investigation." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter aloeverae Gram-negative rod motile aerobic 32 mesophilic non-spore-forming 1750518 PYAL00000000.1 Bac0018331 Pseudomonas sp. R9.37 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. R9.37 1390498 PYAQ00000000.1 Bac0018332 Dyadobacter jiangsuensis strain DSM 29057 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter jiangsuensis 1591085 PYAS00000000.1 Bac0018333 Saccharothrix carnea strain CGMCC 4.7097 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix carnea 1280637 PYAX00000000.1 Bac0018334 Micromonospora arborensis strain NRRL 8041 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora arborensis 2116518 PYBV00000000.1 Bac0018335 Methylocystis sp. MitZ-2018 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylocystaceae Methylocystis Methylocystis sp. MitZ-2018 2127046 PYDU00000000.1 Bac0018336 Siccibacter turicensis strain 6100069499-17 "Siccibacter turicensis strain 6100069499-17 is a Gram-negative, non-spore-forming spherical bacterium that thrives optimally at a temperature of 25.0°C. Its Gram-negative status indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic that may influence its interaction with the environment and other organisms.↵↵The spherical morphology of this strain suggests potential adaptations for survival in various habitats, possibly facilitating efficient nutrient uptake and interactions within microbial communities. The non-sporulating nature of Siccibacter turicensis indicates a reliance on favorable environmental conditions for growth, as it does not produce spores as a means of enduring adverse conditions. This trait can impact its ecological niche, possibly confining it to environments that provide the required temperature and resources for growth.↵↵Further research on Siccibacter turicensis strain 6100069499-17 could elucidate its role in its native habitat, particularly how its temperature preferences and morphological characteristics allow it to thrive in specific ecological contexts. Understanding such traits may provide insights into its potential interactions with other microorganisms and its contributions to biogeochemical cycles in its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Siccibacter Siccibacter turicensis Gram-negative sphere 25 mesophilic non-spore-forming 357233 PYEP00000000.1 Bac0018337 Filamentous cyanobacterium CCP5 Bacillati Cyanobacteriota filamentous cyanobacterium CCP5 2107701 PYEQ00000000.1 Bac0018338 Glaciimonas sp. PCH181 6. Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Glaciimonas Glaciimonas sp. PCH181 2133943 PYFP00000000.1 Bac0018339 Adhaeribacter arboris strain HMF7605 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Adhaeribacter Adhaeribacter arboris 2072846 PYFT00000000.1 Bac0018340 Bradyrhizobium sp. MOS002 mos002_70 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. MOS002 2133947 PYFX00000000.1 Bac0018341 Murinocardiopsis flavida strain DSM 45312 "Murinocardiopsis flavida strain DSM 45312 is a Gram-positive, aerobic bacterium that is characterized by its non-spore-forming nature. This strain belongs to the genus Murinocardiopsis, which is noted for its distinct phenotypic traits that differentiate it from other related microbial taxa. The Gram-positive classification indicates a thick peptidoglycan layer in its cell wall, which is a common feature of many bacteria in this category, contributing to its structural integrity and resilience in various environments.↵↵The aerobic requirement of Murinocardiopsis flavida strain DSM 45312 suggests that it relies on oxygen for its metabolic processes, which may influence its ecological niche and interactions with other microorganisms. The absence of sporulation indicates that this strain has alternative survival strategies in response to environmental stressors rather than entering a dormant state through spore formation.↵↵Understanding the traits of Murinocardiopsis flavida strain DSM 45312 contributes to the broader knowledge of microbial diversity and ecological roles. Its oxygen-dependent metabolism could play a significant role in biogeochemical cycles, particularly in environments where aerobic conditions prevail. Additionally, the non-spore-forming characteristic may imply a more active ecological presence, potentially affecting microbial community dynamics and nutrient cycling in its habitat." Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Murinocardiopsis Murinocardiopsis flavida Gram-positive aerobic non-spore-forming 645275 PYGA00000000.1 Bac0018342 Limimaricola soesokkakensis strain DSM 29956 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Limimaricola Limimaricola soesokkakensis 1343159 PYGB00000000.1 Bac0018343 Taibaiella chishuiensis strain CGMCC 1.12700 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Taibaiella Taibaiella chishuiensis 1434707 PYGD00000000.1 Bac0018344 Sphingobium sp. AEW4 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. AEW4 2116625 PYGL00000000.1 Bac0018345 Kluyvera genomosp. 2 strain KA2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kluyvera Kluyvera genomosp. 2 2774054 PYHO00000000.1 Bac0018346 Paenibacillus elgii strain AC13 "Paenibacillus elgii strain AC13 is a rod-shaped, spore-forming bacterium characterized by its Gram-negative or Gram-positive staining properties. This strain thrives optimally at a temperature of 32.0°C and is capable of adapting to both aerobic and anaerobic environments, indicating a facultative lifestyle. ↵↵Isolated from soil habitats, P. elgii strain AC13 likely plays a significant role in the soil microbiome, contributing to nutrient cycling and organic matter decomposition. Its ability to form spores suggests a survival strategy in fluctuating environmental conditions, allowing it to endure periods of nutrient scarcity or unfavorable temperatures. ↵↵Understanding the physiological traits of P. elgii strain AC13 enhances our knowledge of soil microbial diversity and the functional roles these organisms play in terrestrial ecosystems. Further research on its interactions within the soil matrix could reveal insights into microbial community dynamics and the potential applications of this strain in bioremediation or sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus elgii Gram-negative / Gram-positive rod facultative aerobe/anaerobe 32 mesophilic soil spore-forming 189691 PYHP00000000.1 Bac0018347 Serinibacter arcticus strain PCH200 unitig_0 Bacillati Actinomycetota Actinomycetes Micrococcales Beutenbergiaceae Serinibacter Serinibacter arcticus 1655435 PYHR00000000.1 Bac0018348 Nocardia nova strain ATCC 33727 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia nova 37330 PYHS00000000.1 Bac0018349 Nocardia sp. MDA0666 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. MDA0666 2135448 PYHT00000000.1 Bac0018350 Acinetobacter sichuanensis strain WCHAc060041 234 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sichuanensis 2136183 PYIX00000000.2 Bac0018351 Xanthomonas vasicola pv. vasculorum strain 715 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vasicola 325776 PYJL00000000.1 Bac0018352 Rhizobium sp. SEMIA4064 C01_22 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. SEMIA4064 2127048 PYJN00000000.1 Bac0018353 Mesorhizobium loti strain LMG 6125 C02_52 "Mesorhizobium loti strain LMG 6125 C02_52 is a Gram-negative, rod-shaped bacterium that exhibits aerobic growth. This strain is part of a genus known for its symbiotic relationships with legumes, facilitating nitrogen fixation, which is crucial for plant growth and soil health. Mesorhizobium loti strains are commonly found in diverse habitats, indicating their adaptability and potential role in various ecosystems. ↵↵The aerobic nature of this strain suggests a reliance on oxygen for metabolic processes, which may influence its distribution and interactions within microbial communities. Given the versatility of the habitat in which it is found, Mesorhizobium loti strain LMG 6125 C02_52 could play a significant role in nutrient cycling, particularly in nitrogen dynamics, which is essential for maintaining soil fertility and supporting plant productivity.↵↵In summary, the ecological implications of this strain extend beyond its symbiotic potential, highlighting its contribution to microbial diversity and function in various environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium loti Negative Rod Yes Aerobe Mesophilic Multiple Symbiotic 381 PYJO00000000.1 Bac0018354 Rhizobium sp. JAB6 C04_11 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. JAB6 2127050 PYJQ00000000.1 Bac0018355 Photobacterium aquimaris strain DSM 23343 CFSAN065518_113 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium aquimaris aerobic 512643 PYLY00000000.1 Bac0018356 Photobacterium swingsii strain DSM 24669 CFSAN065517_45 "Photobacterium swingsii strain DSM 24669 CFSAN065517_45 is a Gram-negative, ovoid-shaped bacterium exhibiting facultative aerobic and anaerobic metabolic capabilities. This versatile organism can thrive in both the presence and absence of oxygen, suggesting a significant adaptability to varying environmental conditions. The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group and may play a role in its interaction with other microbial communities and its resilience in diverse habitats.↵↵The ovoid morphology of P. swingsii may influence its ecological niche, as this shape can facilitate a unique mode of motility and nutrient acquisition in different environments. Furthermore, the facultative anaerobic nature of this strain suggests that it may occupy ecological niches where oxygen levels fluctuate, such as in sediments or within biofilms, allowing it to participate in various biogeochemical processes.↵↵Understanding the traits of Photobacterium swingsii strain DSM 24669 CFSAN065517_45 may provide insights into its potential role in nutrient cycling and microbial interactions in both marine and terrestrial ecosystems. The adaptability of this strain to oxygen availability highlights its possible significance in environments where oxygen levels are dynamic, indicating a potential for influencing local microbial community structures and functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium swingsii Gram-negative ovoid facultative aerobe/anaerobe 680026 PYLZ00000000.1 Bac0018357 Photobacterium sanctipauli strain DSM 100436 CFSAN065516_51 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium sanctipauli 1342794 PYMA00000000.1 Bac0018358 Photobacterium rosenbergii strain DSM 19138 CFSAN065515_74 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium rosenbergii 294936 PYMB00000000.1 Bac0018359 Photobacterium lipolyticum strain DSM 16190 CFSAN065514_62 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium lipolyticum 266810 PYMC00000000.1 Bac0018360 Photobacterium aquimaris strain BS2 CFSAN065502_83 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium aquimaris aerobic 512643 PYMK00000000.1 Bac0018361 Photobacterium damselae strain BT-6 CFSAN065500_43 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae mesophilic 38293 PYMM00000000.1 Bac0018362 Photobacterium phosphoreum strain AK-5 CFSAN065477_180 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium phosphoreum aerobic ground beef; steak tartare 659 PYNB00000000.1 Bac0018363 Photobacterium sp. GB-1 CFSAN065446_72 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium sp. GB-1 2022111 PYOB00000000.1 Bac0018364 Photobacterium leiognathi strain ATCC 33979 CFSAN065438_114 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium leiognathi 553611 PYOJ00000000.1 Bac0018365 Photobacterium angustum strain ATCC 33975 CFSAN065437_52 "Photobacterium angustum strain ATCC 33975 CFSAN065437_52 is a Gram-negative, aerobic bacterium isolated from the surface coastal waters of Botany Bay in Sydney, Australia. This marine microbe thrives in its coastal habitat, where it is exposed to a variety of environmental conditions characteristic of marine ecosystems. ↵↵As an aerobic organism, Photobacterium angustum utilizes oxygen for its metabolic processes, which may play a significant role in its ecological interactions within the coastal waters. The bacterium’s presence in surface waters suggests its potential involvement in biogeochemical cycles, possibly influencing nutrient dynamics and microbial community structures in marine environments.↵↵Given its habitat, P. angustum may contribute to the degradation of organic matter and the cycling of carbon and nitrogen in coastal marine ecosystems. Understanding its ecological role could provide insights into the functioning and health of marine environments, especially in light of anthropogenic impacts on coastal waters. Further research may elucidate its interactions with other marine organisms and its potential contributions to marine biodiversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium angustum negative aerobic "Botany Bay; Marine; sea; surface coastal waters; surface coastal waters in Botany Bay (Sydney), Australia" 661 PYOK00000000.1 Bac0018366 Micromonospora sp. RP3T Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. RP3T 2135446 PYPS00000000.1 Bac0018367 Escherichia albertii strain 20507-2 "Escherichia albertii strain 20507-2 is a Gram-negative bacterium that exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. This strain belongs to a genus known for its versatility and adaptability, which can be significant for its survival in varied ecological niches. The Gram-negative nature of E. albertii strain 20507-2 indicates the presence of an outer membrane that may contribute to its resilience against environmental stresses.↵↵As a facultative anaerobe, E. albertii strain 20507-2 can utilize oxygen when available, but can also generate energy through fermentation or anaerobic respiration in its absence. This metabolic flexibility may enable the strain to exploit a range of habitats, from oxygen-rich environments to more anaerobic conditions found in certain soil or gastrointestinal settings.↵↵The ability to adapt to fluctuating oxygen levels and to utilize various metabolic pathways may provide insights into the ecological roles of E. albertii strains within microbial communities. Understanding the environmental adaptability of this strain could shed light on its interactions within diverse ecosystems, particularly in relation to nutrient cycling and microbial competition. Further studies on strain 20507-2 could elucidate its potential contributions to the dynamics of microbial populations in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia albertii Negative Facultative anaerobe 208962 PYQT00000000.1 Bac0018368 Vibrio cholerae strain UG042 "Vibrio cholerae strain UG042 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotroph, indicating its reliance on organic compounds for energy. Vibrio cholerae strain UG042 thrives optimally at a temperature of 20.0°C, which suggests a preference for cooler environments, potentially influencing its distribution in aquatic habitats. ↵↵As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, allowing it to inhabit diverse ecological niches. The ability to adapt to varying oxygen levels may contribute to its survival in fluctuating environmental conditions, such as those found in estuarine and freshwater ecosystems. ↵↵Given its heterotrophic nature and versatility in energy utilization, Vibrio cholerae strain UG042 may play a significant role in nutrient cycling within its habitat, potentially contributing to the breakdown of organic matter. This trait underscores the importance of understanding the ecological dynamics of Vibrio species, as they may influence microbial community structure and function in their respective environments. Further studies could elucidate the specific roles of this strain within microbial assemblages, particularly in relation to its ecological interactions and contributions to biogeochemical processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 PYRF00000000.1 Bac0018369 Stenotrophomonas sp. Nf4 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. Nf4 2116542 PYTX00000000.1 Bac0018370 Kluyvera sp. Nf5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kluyvera Kluyvera sp. Nf5 2116543 PYTY00000000.1 Bac0018371 Bacillus sp. Nf3 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. Nf3 2116541 PYUA00000000.1 Bac0018372 Paraburkholderia caribensis strain TJ182 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia caribensis 75105 PYUB00000000.1 Bac0018373 Bacillus subtilis strain MCCC 1A10476 "Bacillus subtilis strain MCCC 1A10476 is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate, which allows it to withstand adverse environmental conditions. This strain demonstrates facultative anaerobic metabolism, enabling it to grow in both the presence and absence of oxygen. Optimal growth occurs at a temperature of 25.0°C, highlighting its adaptability to various thermal environments.↵↵B. subtilis is typically found in host-associated habitats, suggesting a potential role in symbiotic relationships or interactions with other microbial communities within these environments. The ability of this strain to sporulate is particularly significant, as it not only contributes to its survival under unfavorable conditions but also plays a crucial role in its lifecycle and ecological fitness.↵↵The ecological implications of Bacillus subtilis strain MCCC 1A10476's traits could include its contribution to nutrient cycling and soil health, particularly in host-associated ecosystems where it may interact with other microorganisms. Additionally, its facultative anaerobic nature provides it with a competitive advantage in fluctuating oxygen conditions, which are common in natural habitats. Overall, this strain exemplifies the adaptability and ecological versatility of Bacillus subtilis within diverse environments." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis Positive Rod Yes 1 1 Facultative 25 Mesophilic HostAssociated Free living Sporulating 1423 PYWO00000000.1 Bac0018374 Pseudomonas palleroniana strain LMG 23076 611_3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas palleroniana 191390 PYWX00000000.1 Bac0018375 Prevotella sp. oral taxon 376 strain F0043 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 376 712466 PYXG00000000.1 Bac0018376 Nocardioides currus strain IB-3 Nocar-IB3_20 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides currus 2133958 PYXZ00000000.1 Bac0018377 Staphylococcus devriesei strain SNUC 4143 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus devriesei 586733 PYZH00000000.1 Bac0018378 Staphylococcus devriesei strain SNUC 1316 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus devriesei 586733 PYZJ00000000.1 Bac0018379 Staphylococcus chromogenes strain SNUC 1363 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus chromogenes bovine milk; milk; TA; teat apices 46126 PZAO00000000.1 Bac0018380 Staphylococcus agnetis strain SNUC 4805 "Staphylococcus agnetis strain SNUC 4805 is a Gram-positive cocci bacterium that typically exhibits a clustered arrangement, forming singles as well. This strain thrives in host-associated habitats, indicating a potential association with specific biological hosts. S. agnetis is classified as a facultative anaerobe, capable of growth in both aerobic and anaerobic environments, which may facilitate its adaptability to varying conditions within host organisms.↵↵Optimal growth for S. agnetis strain SNUC 4805 occurs at a temperature of 3.0°C, suggesting a preference for cooler environments that could be characteristic of certain niches within its host. This adaptation may reflect its ecological role, potentially influencing its interactions with host tissues and the microbial community structure in its habitat. ↵↵The ability to grow under facultative anaerobic conditions coupled with its Gram-positive nature may also provide insights into the metabolic pathways utilized by this strain, although specific biochemical capabilities are not detailed here. Overall, the known traits of Staphylococcus agnetis strain SNUC 4805 suggest an organism well-suited to a specialized ecological niche, potentially contributing to the microbial diversity associated with its host environment." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus agnetis Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 985762 PZDT00000000.1 Bac0018381 Staphylococcus agnetis strain SNUC 3610 "Staphylococcus agnetis strain SNUC 3610 is a Gram-positive coccus that typically arranges itself in clusters or singles. This strain is facultatively anaerobic, indicating its ability to grow in both the presence and absence of oxygen, making it versatile in various environments. S. agnetis strain SNUC 3610 thrives at an optimal temperature of 3.0°C, suggesting its adaptation to cooler habitats, potentially within host-associated environments. ↵↵The clustering arrangement of the cells may imply a level of social interaction or cooperation that could facilitate survival in specific ecological niches. Given its facultative oxygen requirement and association with hosts, S. agnetis strain SNUC 3610 may play a role in the microbiomes of certain organisms, contributing to the overall microbial diversity and potentially influencing the host's health. Understanding the specific interactions and roles of this strain within its habitat could provide insights into its ecological function and potential applications in microbiology." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus agnetis Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 985762 PZDX00000000.1 Bac0018382 Staphylococcus warneri strain SNUC 2993 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus warneri 1292 PZEV00000000.1 Bac0018383 Staphylococcus succinus strain SNUC 4645 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus succinus 61015 PZFM00000000.1 Bac0018384 Staphylococcus nepalensis strain SNUC 4337 "Staphylococcus nepalensis strain SNUC 4337 is a Gram-positive, cocci-shaped bacterium characterized by its arrangement in singles. As a nonsporulating organism, it relies on a chemoheterotrophic metabolism, utilizing organic compounds as its energy source. S. nepalensis strain SNUC 4337 exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments.↵↵This strain is found in multiple habitats, suggesting a versatile ecological niche that may facilitate its adaptation to various environmental conditions. Its ability to grow in diverse settings highlights the potential for S. nepalensis to play roles in different microbial communities, possibly contributing to nutrient cycling or engaging in symbiotic relationships with other microorganisms. Further studies may elucidate the specific ecological functions and interactions of this strain within its habitats, providing insights into its role in microbial ecosystems." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus nepalensis Positive Cocci No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Singles Nonsporulating 214473 PZHR00000000.1 Bac0018385 Archaeon SCG-AAA382B04 archaeon SCG-AAA382B04 2137776 PZKD00000000.1 Bac0018386 Fuscovulum blasticum DSM 2131 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudogemmobacter Pseudogemmobacter blasticus 1188250 PZKE00000000.1 Bac0018387 Phaeovulum veldkampii DSM 11550 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Phaeovulum Phaeovulum veldkampii 1185920 PZKF00000000.1 Bac0018388 Streptomyces sp. A244 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. A244 2137016 PZKK00000000.1 Bac0018389 Aeromonas veronii strain XH.VA.1 "Aeromonas veronii strain XH.VA.1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is an aerobic organism, thriving in environments that provide sufficient oxygen. Its primary habitat is sediment, which suggests that it may play a role in the biogeochemical processes occurring in aquatic ecosystems.↵↵The rod shape and arrangement of A. veronii strain XH.VA.1 may facilitate its mobility and interaction with other microorganisms in sediment environments. As an aerobe, this strain likely engages in metabolic processes that utilize oxygen, potentially influencing the microbial community structure and nutrient cycling in its habitat. The presence of A. veronii in sediment may also indicate its involvement in the degradation of organic matter, contributing to the overall health of the ecosystem.↵↵Understanding the specific ecological roles and interactions of A. veronii strain XH.VA.1 within sediment environments could provide insights into its contributions to sediment quality and ecosystem functioning, particularly in freshwater or brackish water systems where such bacteria are often found. Further studies could elucidate its interactions with other sediment-dwelling microorganisms and its role in nutrient dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles Animal; Human 654 PZKL00000000.1 Bac0018390 Vitiosangium sp. GDMCC 1.1324 Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Vitiosangium Vitiosangium sp. GDMCC 1.1324 2138576 PZOX00000000.1 Bac0018391 Staphylococcus aureus strain CM34 "Staphylococcus aureus strain CM34 is a Gram-positive coccus that typically exhibits a characteristic clustered arrangement, often appearing as singles or in groups. This strain is classified as facultatively anaerobic, allowing it to thrive in environments with varying oxygen levels, which may enhance its adaptability in host-associated habitats. The optimal growth temperature for S. aureus CM34 is notably low at 3.0°C, suggesting that this strain may be particularly well-suited for survival in cooler environments or within specific host niches that maintain lower temperatures. ↵↵Given its association with hosts, this strain's ability to grow in suboptimal temperatures may indicate a role in particular ecological contexts or the potential to exploit unique host-associated environments. This adaptability underscores the importance of S. aureus CM34 in studies related to microbial survival strategies and its interactions within its host ecosystem. Further investigation into its specific habitat preferences and potential roles in host dynamics could yield valuable insights into the ecological strategies employed by this strain." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 PZSP00000000.1 Bac0018392 Desmospora activa DSM 45169 "Desmospora activa DSM 45169 is a Gram-positive, spore-forming bacterium that thrives optimally at 37.0°C. As a member of the microbial world, its Gram-positive nature indicates a thick peptidoglycan layer in its cell wall, which may confer resilience to certain environmental stresses. The ability to form spores suggests that D. activa has adapted mechanisms for survival in unfavorable conditions, allowing it to persist in various environments until favorable growth conditions return.↵↵The optimal growth temperature of 37.0°C indicates that D. activa may be well-suited for living in warm environments, potentially including those associated with warm-blooded hosts or specific ecological niches that maintain this temperature range. This trait may also imply a role in the microbial community dynamics where temperature regulation is critical for host-microbe interactions.↵↵The sporulation capability of Desmospora activa highlights its potential for longevity and dispersal, enabling it to survive in diverse habitats and possibly contributing to soil health or nutrient cycling processes. This resilience and adaptability suggest that D. activa could play a significant role in its ecosystem, particularly in nutrient availability and microbial community structure, though further research would be necessary to elucidate its specific ecological contributions." Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Desmospora Desmospora activa Gram-positive 37 mesophilic spore-forming 1121389 PZZP00000000.1 Bac0018393 Pseudomonas sp. HMWF021 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. HMWF021 2056857 QAIK00000000.1 Bac0018394 Pedobacter sp. HMWF019 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. HMWF019 2056856 QAIL00000000.1 Bac0018395 Acidovorax sp. HMWF018 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. HMWF018 2056855 QAIM00000000.1 Bac0018396 Aeromonas sp. HMWF015 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. HMWF015 2056851 QAIO00000000.1 Bac0018397 Sphingomonas sp. HMWF008 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. HMWF008 2056845 QAIS00000000.1 Bac0018398 Pseudomonas sp. HMWF005 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. HMWF005 2056842 QAIV00000000.1 Bac0018399 Stenotrophomonas sp. HMWF003 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. HMWF003 2056840 QAIW00000000.1 Bac0018400 Aeromonas sp. HMWF017 Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas sp. HMWF017 2056853 QAJD00000000.1 Bac0018401 Taibaiella sp. KBW10 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Taibaiella Taibaiella sp. KBW10 2153357 QAJI00000000.1 Bac0018402 Chryseobacterium sp. KBW03 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. KBW03 2153362 QAJO00000000.1 Bac0018403 Pedobacter sp. KBW01 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. KBW01 2153364 QAJQ00000000.1 Bac0018404 Acidovorax sp. FJL06 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. FJL06 2153365 QAJR00000000.1 Bac0018405 Aquitalea sp. FJL05 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Aquitalea Aquitalea sp. FJL05 2153366 QAJS00000000.1 Bac0018406 Clostridia bacterium Bacillati Bacillota Clostridia Clostridia bacterium 2044939 QAKG00000000.1 Bac0018407 Desulfovibrionaceae bacterium Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrionaceae bacterium 2049043 QAMY00000000.1 Bac0018408 Pseudomonas plecoglossicida strain KCJK7865 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas plecoglossicida soil environments 70775 QANO00000000.1 Bac0018409 Sphingomonas aurantiaca strain MA101b Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas aurantiaca 185949 QAOG00000000.1 Bac0018410 Celeribacter persicus strain DSM 100434 "Celeribacter persicus strain DSM 100434 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at 29.0°C. This strain is characterized by its rod morphology, which is typical of many members within the family of Celeribacter. As an aerobic organism, it requires oxygen for its growth and metabolic processes, which suggests a potential role in environments where oxygen is readily available.↵↵The optimal growth temperature of 29.0°C indicates that Celeribacter persicus may be well-adapted to moderate thermal conditions, possibly reflecting its ecological niche in environments such as soil or aquatic systems that experience temperate climates. This temperature preference may influence its distribution and interactions within microbial communities, particularly in relation to other microorganisms that share similar thermal tolerances.↵↵Given its aerobic nature and optimal growth temperature, Celeribacter persicus strain DSM 100434 could contribute to biogeochemical cycling in its natural habitat, particularly in the degradation of organic matter where oxygen is present. Understanding the growth characteristics and metabolic capabilities of this strain may provide insights into its ecological roles, particularly in nutrient cycling and its interactions with other microbial inhabitants of its environment." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Celeribacter Celeribacter persicus Gram-negative rod non-motile aerobic 29 mesophilic non-spore-forming 1651082 QAOH00000000.1 Bac0018411 Trichococcus patagoniensis strain DSM 18806 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Trichococcus Trichococcus patagoniensis 382641 QAOM00000000.1 Bac0018412 Nitrosospira sp. Nsp5 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. Nsp5 200119 QAOR00000000.1 Bac0018413 Nitrosospira sp. Nsp2 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira sp. Nsp2 136548 QAOU00000000.1 Bac0018414 Sphaerisporangium cinnabarinum strain ATCC 31213 134 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Sphaerisporangium Sphaerisporangium cinnabarinum 47482 QAPD00000000.1 Bac0018415 Salmonella enterica subsp. enterica strain CFSAN058603 "Salmonella enterica subsp. enterica strain CFSAN058603 is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This strain is a chemoorganotroph, utilizing organic compounds as its energy source, which is indicative of its potential metabolic versatility. It thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions commonly found in its host-associated habitats. As a microaerophilic organism, S. enterica strain CFSAN058603 requires reduced levels of oxygen for growth, suggesting an adaptation to environments where oxygen is not freely available, such as within the gastrointestinal tracts of animals.↵↵The host-associated nature of this strain implies a close ecological relationship with its host, likely involving interactions that could influence microbial community dynamics in the gut. Such interactions may play a role in nutrient cycling and could impact host health. Further research into this strain's specific ecological roles and interactions within its host environment may provide insights into its contributions to the overall microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59201 QARU00000000.1 Bac0018416 Chromobacterium sp. Panama Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium sp. Panama 2161826 QARX00000000.1 Bac0018417 Salmonella enterica subsp. enterica serovar Weltevreden strain "Salmonella enterica subsp. enterica serovar Weltevreden strain is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting a close association with host environments. As a chemoorganotroph, it derives energy from organic compounds, further emphasizing its role in host-associated habitats where organic substrates are available.↵↵The strain's microaerophilic nature indicates that it requires low levels of oxygen for growth, which can influence its ecological niche within host-associated environments. This adaptation may enable it to colonize specific sites within a host, where oxygen levels are reduced compared to ambient conditions. The combination of its morphological traits, energy utilization, and oxygen requirements suggests that Salmonella enterica serovar Weltevreden may occupy a specialized ecological role in its host, potentially influencing the dynamics of microbial communities within the gastrointestinal tract. Understanding these traits can provide insights into its potential interactions with both host and other microbial species present in the same environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 57743 QASP00000000.1 Bac0018418 Salmonella enterica subsp. enterica serovar Stanley strain sg_wt13 "Salmonella enterica subsp. enterica serovar Stanley strain sg_wt13 is a Gram-negative, spirilla-shaped bacterium that typically exists as single cells or in chains. This strain exhibits optimal growth at a temperature of 37.0°C, which is consistent with its adaptation to host-associated environments. As a chemoorganotroph, it derives energy from organic compounds, positioning it to exploit nutrient-rich conditions often found in host organisms.↵↵The microaerophilic nature of strain sg_wt13 indicates that it requires reduced oxygen levels for optimal growth, suggesting that it may thrive in specific niches within the host where oxygen is limited but not absent. This trait may facilitate its survival in various biological environments, particularly where competition with other microorganisms is influenced by oxygen availability.↵↵The presence of this strain in host-associated habitats may reflect its potential roles in the complex interactions within the host's microbiome, possibly contributing to nutrient cycling or influencing host health in subtle ways. Further studies could elucidate its specific ecological functions and interactions within these host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 192953 QATA00000000.1 Bac0018419 Salmonella enterica subsp. enterica serovar Saintpaul strain "Salmonella enterica subsp. enterica serovar Saintpaul strain is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain thrives optimally at 37.0°C, which aligns with the typical body temperature of many hosts, highlighting its adaptation to a host-associated habitat. As a chemoorganotroph, it derives its energy from organic compounds, which is consistent with its ecological niche within various host organisms. ↵↵The microaerophilic oxygen requirement of this strain indicates that it grows best in environments with reduced oxygen levels, suggesting a specialized adaptation to specific microenvironments within host tissues or fluids. These traits collectively underscore the bacterium's potential role in the host's microbiome, where it may interact with other microbial communities and influence metabolic processes. The ability to maintain its growth under microaerophilic conditions may also facilitate its survival in diverse host environments, potentially impacting its ecological dynamics within host-associated niches. This characteristic of S. enterica serovar Saintpaul could be significant in understanding its interactions and competition with other microorganisms in the gut, illustrating the complexity of microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 90105 QATN00000000.1 Bac0018420 Salmonella enterica subsp. enterica serovar Brancaster strain "Salmonella enterica subsp. enterica serovar Brancaster strain is a Gram-negative bacterium characterized by its spirilla shape and the tendency to form chains or occur as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the temperature of the host organisms it is associated with. As a chemoorganotroph, it derives its energy from organic compounds, which is typical for bacteria that inhabit host-associated environments. Furthermore, this strain exhibits microaerophilic oxygen requirements, indicating that it requires lower levels of oxygen for growth compared to atmospheric conditions. ↵↵The habitat of Salmonella enterica subsp. enterica serovar Brancaster strain is closely linked to its association with hosts, suggesting a potential role in the microbiota of various organisms. Its adaptation to a microaerophilic environment may facilitate survival and colonization within specific niches of the host, possibly influencing host metabolism and immune responses. This microbe's ability to thrive in specific oxygen conditions while relying on organic substrates highlights the intricate relationships that can develop between microbes and their hosts in a shared ecological framework." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2511819 QAUO00000000.1 Bac0018421 Salmonella enterica subsp. enterica serovar Albany strain sg_wb24 "Salmonella enterica subsp. enterica serovar Albany strain sg_wb24 is a Gram-negative bacterium characterized by its spirilla shape and cell arrangement observed in chains or as singles. This strain exhibits microaerophilic properties, indicating a preference for environments with reduced oxygen levels, which aligns with its adaptation to host-associated habitats. Optimal growth occurs at 37.0 °C, a temperature that coincides with the physiological conditions of many warm-blooded hosts.↵↵As a chemoorganotroph, S. enterica serovar Albany strain sg_wb24 derives its energy from organic compounds, which is typical of many pathogenic and non-pathogenic bacteria inhabiting host organisms. This metabolic capability suggests a potential role in nutrient cycling within its ecological niche, particularly in the context of host interactions. Understanding the specific environmental and metabolic adaptations of this strain may provide insights into its ecological impact and potential interactions with both the host and other microbial communities. Further investigations into its behavior in host-associated habitats could elucidate its role in microbial dynamics and its contributions to the broader ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 211968 QAUU00000000.1 Bac0018422 Halanaerobium saccharolyticum strain WC1 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium saccharolyticum No 1 Anaerobic Chemoheterotroph Mesophilic Nonsporulating 43595 QAXS00000000.1 Bac0018423 Rhodovulum kholense strain DSM 19783 "Rhodovulum kholense strain DSM 19783 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0°C. This organism is part of the broader Rhodovulum genus, which is known for its phototrophic capabilities, utilizing light as an energy source.↵↵The Gram-negative nature of R. kholense indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this classification. This structural feature may influence its interactions with the environment and other microorganisms, potentially affecting its ecological niche and metabolic pathways.↵↵As a non-spore-forming organism, R. kholense relies on alternative survival strategies in the face of environmental stressors, such as temperature fluctuations or nutrient scarcity. The optimal growth temperature of 29.0°C suggests that it is adapted to thrive in moderate thermal environments, which may be indicative of its natural habitat.↵↵Overall, R. kholense could play a significant role in its ecosystem, particularly in phototrophic processes, contributing to nutrient cycling and energy flow within microbial communities. Its specific adaptations may allow it to occupy unique ecological niches where light availability and temperature conditions align, thus enhancing the diversity and functionality of microbial assemblages in its habitat." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum kholense Gram-negative rod 29 mesophilic non-spore-forming 453584 QAYC00000000.1 Bac0018424 Sphingomonas faeni strain MA-olki Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas faeni 185950 QAYE00000000.1 Bac0018425 Acinetobacter pittii strain KCJK7889 "Acinetobacter pittii strain KCJK7889 is a Gram-negative, rod-shaped bacterium that exists as single cells and thrives optimally at a temperature of 37.0°C. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which reflects its adaptability to diverse environments. Acinetobacter pittii has been observed in various habitats, suggesting its ability to occupy multiple ecological niches. As an aerobic organism, it requires oxygen for metabolic processes, which may influence its distribution in environments where oxygen availability varies.↵↵The ability of Acinetobacter pittii strain KCJK7889 to utilize a range of organic substrates underscores its ecological versatility and potential role in biogeochemical cycles, particularly in the degradation of organic matter. This trait may be particularly relevant in environments impacted by anthropogenic activities, where organic pollutants are prevalent. Further research into this strain's metabolic pathways could provide insights into its interactions with other microbial communities and its contributions to ecosystem functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 QAYM00000000.1 Bac0018426 Acinetobacter oleivorans strain KCJK7897 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter oleivorans 1148157 QAYN00000000.1 Bac0018427 Acinetobacter seifertii strain KCJK7915 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter seifertii 1530123 QAYP00000000.1 Bac0018428 Opitutaceae bacterium EW11 Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutaceae bacterium EW11 2161865 QAYY00000000.1 Bac0018429 Enterobacter sp. EC-NT1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. EC-NT1 2163603 QBFJ00000000.1 Bac0018430 Streptomyces sp. CS014 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS014 2162707 QBHV00000000.1 Bac0018431 Streptomyces sp. CS131 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS131 2162711 QBHZ00000000.1 Bac0018432 Streptomyces sp. CS147 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CS147 2162715 QBIA00000000.1 Bac0018433 Pseudomonas sp. RIT412 RIT412_S3_48 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. RIT412 2202161 QBJA00000000.2 Bac0018434 Capnocytophaga leadbetteri strain DSM 22902 "Capnocytophaga leadbetteri strain DSM 22902 is a Gram-negative, rod-shaped bacterium that belongs to the genus Capnocytophaga. This strain is characterized by its unique morphological features and Gram-negative cell wall structure, which contribute to its identification and classification within the bacterial domain. ↵↵Members of the Capnocytophaga genus are often associated with the human oral microbiome and are known for their role in the degradation of complex carbohydrates. Although specific ecological roles and interactions of C. leadbetteri strain DSM 22902 are not detailed, its rod shape and Gram-negative nature suggest that it may possess specific metabolic pathways that facilitate its survival in varied environments, particularly those rich in organic matter, such as the oral cavity. ↵↵Overall, the traits of Capnocytophaga leadbetteri strain DSM 22902 highlight its potential significance in microbial community dynamics and its possible contributions to the processes involving carbohydrate metabolism in oral ecosystems. Further studies may elucidate its specific interactions within the microbiome and its potential roles in health and disease." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga leadbetteri Gram-negative rod motile 327575 QBKG00000000.1 Bac0018435 Pontibacter mucosus strain DSM 100162 "Pontibacter mucosus strain DSM 100162 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements and an optimal growth temperature of 29.0°C. This strain belongs to the genus Pontibacter, which is notable for its adaptation to various environments, often isolated from soil and aquatic habitats. ↵↵As a member of the bacterial community, P. mucosus plays a potential role in nutrient cycling and organic matter degradation, which are critical processes in various ecosystems. The Gram-negative cell wall structure of this strain contributes to its resilience in diverse environments, allowing it to thrive under aerobic conditions. ↵↵Understanding the physiological traits of P. mucosus, particularly its temperature preference, may provide insights into its ecological niche and adaptability to specific environmental conditions. Such characteristics suggest that this bacterium could be significant in the biogeochemical processes in temperate climates, where similar temperature ranges are prevalent. Further research may elucidate the functional roles of P. mucosus in its native habitats and its interactions with other microbial communities." Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter mucosus Gram-negative rod motile aerobic 29 mesophilic 1649266 QBKI00000000.1 Bac0018436 Gemmobacter caeni strain DSM 21823 "Gemmobacter caeni strain DSM 21823 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 32.0°C. This strain exhibits facultative aerobic and anaerobic metabolic capabilities, allowing it to adapt to varying oxygen conditions in its environment. The Gram-negative cell wall structure of G. caeni is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which is typical for members of its classification. ↵↵The ability to grow under both aerobic and anaerobic conditions suggests that G. caeni may play a versatile role in its ecosystem, potentially participating in various biochemical cycles depending on the availability of oxygen. This adaptability could be particularly advantageous in fluctuating environments, such as sediment or soil layers, where oxygen levels may vary significantly. ↵↵Furthermore, the optimal growth temperature of 32.0°C indicates that G. caeni is likely well-suited for mesophilic conditions, which are commonly encountered in many terrestrial habitats. Understanding the physiological traits of G. caeni could provide insights into its ecological interactions and its potential contributions to nutrient cycling in its native environments. The adaptability of G. caeni to different oxygen levels and temperatures may also make it a candidate for further studies on microbial resilience and metabolic versatility in changing environmental conditions." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Gemmobacter Gemmobacter caeni Gram-negative rod non-motile facultative aerobe/anaerobe 32 mesophilic non-spore-forming 589035 QBKP00000000.1 Bac0018437 Christiangramia gaetbulicola strain DSM 23082 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Christiangramia Christiangramia gaetbulicola 703340 QBKQ00000000.1 Bac0018438 Sulfitobacter mediterraneus strain DSM 12244 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter mediterraneus 83219 QBKU00000000.1 Bac0018439 Pseudanabaena frigida Bacillati Cyanobacteriota Cyanophyceae Pseudanabaenales Pseudanabaenaceae Pseudanabaena Pseudanabaena frigida 945775 QBML00000000.1 Bac0018440 Snowella sp. Bacillati Cyanobacteriota Cyanophyceae Synechococcales Coelosphaeriaceae Snowella Snowella sp. 2164131 QBMS00000000.1 Bac0018441 Helicobacter pylori strain 60:1_single "Helicobacter pylori strain 60:1_single is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, often found in the gastric environment of mammals. ↵↵As a member of the Helicobacter genus, H. pylori is known for its unique ability to survive in the acidic conditions of the stomach, utilizing its spiral morphology and motility to navigate the viscous mucus layer. The microaerophilic nature of this strain indicates a requirement for reduced oxygen levels, which is consistent with its ecological niche in the gastric mucosa where oxygen availability is limited compared to atmospheric levels.↵↵The solitary cell arrangement of strain 60:1_single suggests a potential adaptation strategy that may enhance its survival or colonization in the host environment, allowing for individual metabolic flexibility in response to varying conditions. Understanding these traits not only provides insight into the physiological adaptations of H. pylori but also highlights the intricate relationship between this microbe and its host, emphasizing the importance of further studies on its role in gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPH00000000.1 Bac0018442 Helicobacter pylori strain 55:5 "Helicobacter pylori strain 55:5 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at 37.0°C, indicating a preference for conditions typically found within the human gastric environment. As a microaerophilic organism, H. pylori strain 55:5 requires reduced oxygen levels for growth, aligning with its adaptation to the oxygen-limited niches of the stomach.↵↵The habitat of H. pylori strain 55:5 is host-associated, suggesting a close relationship with its host organism, most commonly humans. The microbe's spiral morphology is thought to facilitate its motility through the viscous gastric mucus, potentially aiding in colonization of the gastric epithelium. This adaptation is significant for its survival in an acidic environment, where it may exploit the host's resources.↵↵The unique combination of its Gram-negative cell wall structure, microaerophilic growth requirement, and optimal temperature aligns with the physiological demands present in the gastric niche. Understanding the specific traits of H. pylori strain 55:5 may provide insights into its interactions with host defenses and the complex dynamics of the gastric microbiome, potentially influencing both health and disease states in humans." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPI00000000.1 Bac0018443 Helicobacter pylori strain 55:2 "Helicobacter pylori strain 55:2 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and arrangement in singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated environments, typically within the gastric mucosa of mammals. ↵↵As a member of the Helicobacter genus, strain 55:2 possesses unique physiological traits that facilitate its survival in the acidic conditions of the stomach. The microaerophilic requirement indicates that this organism requires reduced levels of oxygen for optimal growth, which is consistent with its ecological niche in the gastric environment where oxygen levels are lower than atmospheric conditions.↵↵The ability of Helicobacter pylori strain 55:2 to colonize the gastric mucosa suggests a specialized adaptation to its host, allowing it to exploit the rich nutrient environment present there. This adaptation is critical for its survival and may influence the microbial community dynamics within the host's gastrointestinal tract. Further studies on this strain could provide insights into its interactions with other gastric microbes and its potential role in influencing host health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPJ00000000.1 Bac0018444 Helicobacter pylori strain 29:2_single "Helicobacter pylori strain 29:2_single is a Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This microbe thrives in microaerophilic conditions, indicating a requirement for reduced oxygen levels, which is typical for many organisms residing in host-associated environments. Optimal growth occurs at a temperature of 37.0°C, aligning with the average body temperature of mammalian hosts, suggesting a close adaptation to its ecological niche.↵↵As a member of the genus Helicobacter, strain 29:2_single is likely to exhibit features common to this group, such as the production of urease, which plays a pivotal role in its survival within acidic environments like the stomach. The microbe's ability to inhabit the gastric mucosa underscores its potential for influencing local microbial communities and host physiology.↵↵The solitary arrangement of cells may facilitate individual motility and colonization strategies, potentially allowing strain 29:2_single to navigate the complex microenvironments found within its host. This adaptability highlights the intricate relationship between Helicobacter pylori and its host, where the bacterium may contribute to the dynamic balance of the gastric microbiome. Understanding such traits can provide insights into the broader ecological roles of Helicobacter species in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPP00000000.1 Bac0018445 Helicobacter pylori strain 23:2_single "Helicobacter pylori strain 23:2_single is a Gram-negative bacterium characterized by its spirilla shape and solitary arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, where it likely resides within the gastric environment of mammals. As a microaerophilic organism, H. pylori strain 23:2_single requires reduced levels of oxygen for growth, a trait that is essential for its survival in the highly acidic gastric milieu.↵↵The combination of its unique morphology, temperature preference, and oxygen requirements suggests that H. pylori strain 23:2_single is well-adapted to the specific conditions found in the stomach, where it may play a role in complex microbial interactions. Understanding its physiological traits can provide insights into its ecological niche and potential contributions to the gastric microbiome, as well as its interactions with the host's immune system." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPR00000000.1 Bac0018446 Helicobacter pylori strain 18:2 "Helicobacter pylori strain 18:2 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0 °C, aligning with the physiological conditions typically found in the gastric environment of its host. As a host-associated microbe, H. pylori strain 18:2 is adapted to colonize the stomach, where it can influence host physiology and contribute to a complex interplay of microbial interactions.↵↵The microaerophilic nature of H. pylori strain 18:2 indicates that it requires reduced levels of oxygen for growth, which is consistent with its habitat in the gastric mucosa, where oxygen availability is limited due to the presence of gastric acid and other microbial inhabitants. The spiral morphology of this strain may play a role in its motility, allowing for efficient movement through the viscous gastric mucus layer, facilitating colonization and potentially influencing the gastric environment.↵↵Understanding the traits of H. pylori strain 18:2 not only sheds light on its survival mechanisms within the host but also underscores the bacterium's ecological role in the human microbiome. The interactions of H. pylori with the gastric environment may provide insights into the evolutionary adaptations of microorganisms in response to specific host conditions, particularly in relation to acid tolerance and nutrient acquisition in microaerophilic niches." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPS00000000.1 Bac0018447 Helicobacter pylori strain 66 "Helicobacter pylori strain 66 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37°C, which aligns with the typical physiological conditions found within its host environments. H. pylori strain 66 is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth, a trait that is essential for its survival in the gastric environment where it is commonly associated.↵↵As a host-associated organism, H. pylori strain 66 is adapted to life within the stomach, where it can persist in the acidic environment. Its unique morphology and growth requirements suggest that it has evolved specific mechanisms to cope with and exploit the conditions present in its niche. This adaptability highlights the complex interactions between host physiology and microbial survival strategies, emphasizing the role of microaerophilic bacteria in maintaining the balance of microbial communities within the gastrointestinal tract. Understanding these traits is crucial for further research on the ecological dynamics of H. pylori and its implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPU00000000.1 Bac0018448 Helicobacter pylori strain 57_single "Helicobacter pylori strain 57_single is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and arrangement as single cells. This strain thrives optimally at 37.0°C, aligning with the typical human body temperature, which suggests its adaptation to a host-associated habitat. H. pylori is commonly found in the gastric mucosa of humans, where it can persist in the acidic environment of the stomach.↵↵As a microaerophilic organism, H. pylori strain 57_single requires reduced levels of oxygen for growth, which is indicative of its specialized metabolic pathways that allow for survival in the oxygen-limited conditions of the gastric niche. The spiral morphology of this bacterium is thought to facilitate its motility, enabling it to navigate through the viscous mucus layer of the stomach lining.↵↵Understanding the specific traits of H. pylori strain 57_single contributes to our broader knowledge of microbial adaptation mechanisms in host-associated environments. The unique combination of microaerophilic growth conditions and the ability to thrive at human body temperature underscores the evolutionary strategies employed by this bacterium to inhabit its ecological niche within the host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPV00000000.1 Bac0018449 Helicobacter pylori strain 50 "Helicobacter pylori strain 50 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. It thrives optimally at 37.0°C, which aligns with the typical body temperature of its primary hosts, including humans. This association indicates its adaptation to a host-associated habitat, where it can efficiently exploit the physiological conditions necessary for survival and proliferation.↵↵The microaerophilic nature of H. pylori strain 50 suggests that it requires reduced levels of oxygen for growth, which is consistent with its colonization of the gastric environment, where oxygen concentrations are lower than those found in atmospheric conditions. This adaptation not only enhances its survival but may also play a role in its metabolic processes and interactions within the host.↵↵Understanding the specific traits of H. pylori strain 50 contributes to a broader comprehension of its ecological niche within the human gastrointestinal tract. The bacterium's ability to inhabit a microaerophilic environment highlights its specialized adaptations, which may provide insights into the evolutionary pressures faced by similar microorganisms in host-associated habitats. The unique physiological characteristics of H. pylori strain 50 reflect its intricate relationship with the host, illustrating the complexity of microbial life in specific ecological contexts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPX00000000.1 Bac0018450 Helicobacter pylori strain 32 "Helicobacter pylori strain 32 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated organism, primarily residing in the gastric mucosa of humans and other mammals. ↵↵The spiral morphology of H. pylori is thought to enhance its ability to navigate the viscous environment of the stomach, facilitating colonization and persistence in the gastric niche. Its microaerophilic nature indicates a requirement for reduced oxygen levels, which is characteristic of its adaptation to the gastric environment, where oxygen concentrations are lower than in the atmosphere.↵↵The unique physiological traits of strain 32 imply a specialized role within its host, particularly in relation to the gastric ecosystem. Its ability to survive and proliferate in the acidic conditions of the stomach underscores its evolutionary adaptations, including the potential for influencing gastric pH and microbial community dynamics. Further studies on this strain may elucidate its interactions with host immune responses and other microbial inhabitants of the gastrointestinal tract, contributing to a more comprehensive understanding of its ecological significance in host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBPY00000000.1 Bac0018451 Helicobacter pylori strain 456 "Helicobacter pylori strain 456 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, aligning with its habitat as a host-associated organism, which suggests it is well-adapted to the conditions found within the gastrointestinal tract of mammals. ↵↵The microaerophilic nature of H. pylori strain 456 indicates that it requires reduced oxygen levels for growth, which is consistent with its ecological niche in the stomach, where oxygen tension is typically low. The unique morphology of this strain, combined with its specific environmental requirements, significantly contributes to its survival and persistence in the gastric environment. ↵↵Understanding the traits of H. pylori strain 456 may provide insights into its interactions with the host microbiome and contribute to our knowledge of microbial dynamics within gastrointestinal ecosystems. This strain exemplifies how certain bacteria have evolved specialized traits that facilitate their colonization of specific habitats, highlighting the intricate relationships between microbial life and their environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQC00000000.1 Bac0018452 Helicobacter pylori strain 38185 "Helicobacter pylori strain 38185 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This strain exhibits optimal growth at 37.0°C, which aligns with the typical human body temperature, indicating its adaptation to a host-associated habitat. H. pylori is known for colonizing the gastric epithelium, where it can persist in the acidic environment of the stomach.↵↵The microaerophilic nature of strain 38185 suggests a specific oxygen requirement, as it thrives in environments with reduced oxygen levels, which are prevalent in the gastric niche. This adaptation may confer a competitive advantage in colonizing host tissues, as it can effectively utilize the available nutrients while avoiding the toxic effects of high oxygen concentrations.↵↵The precise ecological role of H. pylori strain 38185 within the host remains an area of interest. Its ability to survive and proliferate in the stomach suggests potential interactions with the host's immune system and gastric microbiota. Understanding these dynamics could provide insights into the broader implications of H. pylori in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQE00000000.1 Bac0018453 Helicobacter pylori strain 31235 "Helicobacter pylori strain 31235 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This strain has an optimal growth temperature of 37.0°C, reflecting its adaptation to the warm environment of its host, typically the human stomach. As a host-associated microbe, H. pylori strain 31235 thrives in the gastric mucosa, where it plays a significant role in the complex microbial community of the stomach.↵↵The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for optimal survival and growth, which aligns with its habitat in the anoxic conditions of the gastric environment. The unique spiral morphology of this bacterium is thought to facilitate its motility through the viscous gastric mucus, enabling it to colonize the stomach lining effectively.↵↵Understanding the specific traits of H. pylori strain 31235 can provide insights into its ecological role within the human microbiome, particularly in relation to gastric health and disease. Its adaptation to microaerophilic conditions and its spiral shape may enhance its ability to evade host immune responses while establishing a niche in the highly acidic gastric milieu. This highlights the intricate relationship between microbial traits and their ecological contexts, emphasizing the evolutionary strategies employed by H. pylori to persist in a challenging environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQG00000000.1 Bac0018454 Helicobacter pylori strain 30908 "Helicobacter pylori strain 30908 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the average human body temperature, suggesting a close association with its host environment. As a microaerophilic organism, H. pylori strain 30908 requires reduced levels of oxygen for growth, indicating its adaptation to specific niches within the host that provide these conditions.↵↵The habitat of H. pylori strain 30908 is predominantly host-associated, reflecting its role in the gastrointestinal tract, particularly within the stomach. This adaptation allows the bacterium to exploit the unique microenvironments present in gastric mucus layers, where it can evade the host's immune responses while influencing local pH levels through urease production.↵↵The traits of H. pylori strain 30908 highlight its specialized role in a host-associated ecosystem, where it may interact dynamically with both host tissues and the microbiome. Such interactions could provide insights into the evolutionary pressures shaping its survival strategies and metabolic functions, ultimately contributing to our understanding of microbial ecology in relation to human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQI00000000.1 Bac0018455 Helicobacter pylori strain GC69-HL "Helicobacter pylori strain GC69-HL is a Gram-negative bacterium characterized by its helical (spirilla) shape and existence as single cells rather than in clusters. This strain thrives in microaerophilic conditions, indicating its requirement for reduced oxygen levels, and demonstrates optimal growth at a temperature of 37.0°C, which aligns with the typical physiological temperature of its human host. ↵↵As a host-associated microbe, H. pylori strain GC69-HL is likely to inhabit the gastric mucosa, where it may play a role in the complex microbial community of the stomach. The microaerophilic nature of this strain suggests a potential adaptation to the unique biochemical environment of the gastric niche, where oxygen levels are lower than atmospheric conditions. ↵↵Further exploration of H. pylori strain GC69-HL could provide insights into its interactions with the host immune system and its role in maintaining gastric homeostasis, as well as its potential implications for gastrointestinal health. Understanding the ecological dynamics of this strain in relation to its host could shed light on the broader ecological functions of Helicobacter species in human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQJ00000000.1 Bac0018456 Helicobacter pylori strain ANT170 "Helicobacter pylori strain ANT170 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at 37.0°C, indicating a preference for temperatures typical of the human body, which is consistent with its habitat being host-associated. As a member of the Helicobacter genus, strain ANT170 resides primarily in the gastric mucosa of its host, where it can influence the local microbiome and potentially impact gastric health. ↵↵The microaerophilic nature of H. pylori strain ANT170 suggests that it requires reduced levels of oxygen for growth, which aligns with the oxygen-poor environments typically found in the stomach lining. This adaptation may facilitate its survival in hostile conditions, where it can evade the host's immune responses and other competing microbes.↵↵Understanding the specific traits of Helicobacter pylori strain ANT170 adds to the knowledge of its ecological niche and physiological adaptations. Insights into its microaerophilic metabolism and temperature preferences may have implications for studying its interactions within the gastric environment and its potential role in influencing the host's overall gastric microbiome dynamics. Further research could elucidate the specific mechanisms by which this strain interacts with host factors, contributing to the complexity of microbial life in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQU00000000.1 Bac0018457 Helicobacter pylori strain 3843 "Helicobacter pylori strain 3843 is a microaerophilic, Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This organism thrives at an optimal temperature of 37°C, reflecting its adaptation to the warm, dynamic environment of its host. As a host-associated microbe, H. pylori strain 3843 is primarily found in the gastric mucosa of humans, where it plays a significant role in the complex interactions between the host and its microbiota.↵↵The microaerophilic nature of this strain indicates that it requires reduced levels of oxygen for optimal growth, which is consistent with its habitat within the stomach, where oxygen concentration is lower than in the atmosphere. Understanding the specific environmental conditions that favor H. pylori strain 3843 is crucial for studying its physiology and potential impacts on host health.↵↵The solitary arrangement of H. pylori strain 3843 may also suggest a unique strategy for colonization and interaction with the gastric epithelium, potentially influencing the dynamics of microbial communities in the host. This trait may allow the bacterium to navigate the gastric environment effectively, avoiding competition and enhancing its persistence in a challenging habitat. Further research into the ecological roles of H. pylori strain 3843 could provide insights into the microbial factors that influence gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQV00000000.1 Bac0018458 Helicobacter pylori strain 3774 "Helicobacter pylori strain 3774 is a Gram-negative bacterium characterized by its distinctive spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the conditions typically found in its host environments. H. pylori strain 3774 is classified as microaerophilic, necessitating reduced oxygen levels for optimal growth, a trait that reflects its adaptation to the gastric mucosa of its host.↵↵As a host-associated organism, H. pylori strain 3774 is primarily found in the stomach, where it may play a role in the complex microbiota of the gastrointestinal tract. The microaerophilic nature of this strain suggests that it has evolved mechanisms to survive in environments with limited oxygen, allowing it to colonize the gastric epithelium effectively. ↵↵The unique shape of H. pylori, along with its motility, facilitates its movement through the viscous mucus layer of the stomach, potentially influencing its interactions with the host's immune system and other microbial inhabitants. This adaptation may provide insights into the ecological niche that H. pylori occupies, as well as its potential role in maintaining gastric homeostasis amidst varying microbial populations within the host's digestive system. Further exploration of H. pylori strain 3774 could reveal important implications for understanding microbial dynamics in gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBQW00000000.1 Bac0018459 Helicobacter pylori strain GC27-HL "Helicobacter pylori strain GC27-HL is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at 37.0°C, indicating its adaptation to the physiological temperature of its host. As a host-associated microbe, H. pylori strain GC27-HL is typically found in the gastric environment, where it plays a role in the complex microbial community of the human stomach. ↵↵The microaerophilic nature of this strain suggests it requires a lower concentration of oxygen for growth compared to atmospheric levels, which aligns with its habitat in the oxygen-restricted gastric niche. The spiral morphology of H. pylori is believed to aid in its motility through the viscous mucosal layer of the stomach, enabling it to colonize and persist in this challenging environment. ↵↵Understanding the specific traits of H. pylori strain GC27-HL can provide insights into its ecological interactions within the gastric microbiome and its potential role in influencing gastric health. The strain’s adaptation to microaerophilic conditions may also shed light on its survival strategies in the acidic gastric environment, highlighting the intricate balance between microbial life and host physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRD00000000.1 Bac0018460 Helicobacter pylori strain B43 "Helicobacter pylori strain B43 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions of its host environments. H. pylori is well-known for its association with the gastric mucosa of various hosts, suggesting a specialized adaptation to host-associated habitats.↵↵As a microaerophilic organism, H. pylori strain B43 requires low levels of oxygen for growth, which influences its metabolic processes and ecological niche. Its spiral morphology may facilitate motility within the viscous gastric environment, allowing it to navigate through the mucus layer that coats the stomach lining and potentially evade the host's immune responses. ↵↵The habitat preference and specific oxygen requirements of strain B43 may provide insights into its ecological role in the gastrointestinal microbiome, where it could interact with other microbial communities and contribute to the overall microbial diversity. Understanding the traits of H. pylori strain B43 can inform further studies on its ecological interactions and potential implications for host health, particularly in the context of gastrointestinal microbiota dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRJ00000000.1 Bac0018461 Helicobacter pylori strain B40 "Helicobacter pylori strain B40 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement in singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated habitats, suggesting a specialized niche within the gastrointestinal tract of its hosts. ↵↵As a member of the Helicobacter genus, strain B40 shares common features with other species in this group, particularly its unique morphology and environmental preferences. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is typical for organisms residing in the gastric environment where oxygen levels are lower than atmospheric conditions.↵↵The association of H. pylori with its host is significant, as it highlights the intricate relationships that bacteria can establish within animal systems, potentially influencing host physiology and immune responses. Understanding the specific traits of strain B40 may provide insights into its role in the microbiome of the host, contributing to a broader comprehension of microbial ecology and the impact of specific strains on host health. This emphasizes the importance of studying individual strains to elucidate their contributions to host-associated microbial communities." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRL00000000.1 Bac0018462 Helicobacter pylori strain B30 "Helicobacter pylori strain B30 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This organism thrives optimally at 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to host-associated environments. The microaerophilic nature of H. pylori strain B30 indicates that it requires lower levels of oxygen for growth compared to atmospheric concentrations, a trait that is crucial for its survival in the gastric niche of its host.↵↵As a member of the Helicobacter genus, strain B30 can be expected to exhibit motility due to its spiral shape, which is often associated with flagella that facilitate movement through viscous environments such as gastric mucus. The association of H. pylori with the human stomach highlights its potential role in the microbial ecology of this habitat, where it may interact with other microbial species and influence gastric health.↵↵The presence of H. pylori strain B30 in the human gut could have implications for understanding the dynamics of gastric microbiota, particularly in relation to its adaptation mechanisms and the potential impact on host physiology. This strain's specific adaptations to a microaerophilic environment and its host-associated habitat underscore the complexity of microbial life in the human gastrointestinal tract, where such organisms can contribute to both health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRP00000000.1 Bac0018463 Helicobacter pylori strain B29 "Helicobacter pylori strain B29 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels, which aligns with its habitat as a host-associated organism. The optimal growth temperature for strain B29 is approximately 37.0°C, reflecting its adaptation to the warm internal environment of its host.↵↵As a member of the Helicobacter genus, strain B29's morphology and growth conditions suggest a specialized ecological niche, likely within the gastric mucosa of hosts. The unique spiral structure of this bacterium may facilitate its motility in the viscous gastric environment, enhancing its ability to colonize and persist in the stomach lining.↵↵Understanding the traits of Helicobacter pylori strain B29 not only contributes to the broader knowledge of its physiological capabilities but also raises questions about its role in host-microbe interactions. Its microaerophilic nature may influence local microenvironment conditions, potentially affecting the microbial community dynamics within the gastrointestinal tract. This highlights the importance of studying strain-specific traits to better understand the ecological roles played by various Helicobacter strains in their respective habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRQ00000000.1 Bac0018464 Helicobacter pylori strain B26 "Helicobacter pylori strain B26 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in microaerophilic conditions, indicating that it requires a reduced oxygen environment for optimal growth. The optimal temperature for H. pylori strain B26 is around 37.0°C, which aligns with its adaptation to the human host, as it typically colonizes the gastric mucosa.↵↵As a host-associated organism, H. pylori strain B26 is found in the stomachs of mammals, where it can influence the local microbiome and contribute to gastrointestinal health. Its unique spiral morphology may play a role in its motility, allowing it to navigate the viscous gastric mucus layer more effectively. This adaptation is crucial, as it enables the bacterium to evade the host's immune responses and establish colonization.↵↵Furthermore, the microaerophilic nature of H. pylori strain B26 suggests that it has evolved specialized metabolic pathways to utilize available nutrients in low-oxygen environments, which are common in the gastric niche. Understanding the traits of H. pylori strain B26 not only provides insights into its survival strategies but also highlights the intricate balance between host-associated microbes and their hosts, which can have implications for digestive health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRR00000000.1 Bac0018465 Helicobacter pylori strain B25 "Helicobacter pylori strain B25 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to its host-associated habitat, likely within the gastric environment of mammals. ↵↵As a member of the Helicobacter genus, strain B25 exhibits features typical of its relatives, including the ability to survive in acidic conditions, which is crucial for its survival in the stomach. Its microaerophilic nature indicates a requirement for reduced oxygen levels for optimal growth, distinguishing it from strictly aerobic or anaerobic organisms. ↵↵While the specific pathogenicity or ecological interactions of strain B25 are not detailed, its adaptation to a host-associated environment suggests a potential role in the complex microbial communities within the gastric niche. Investigating the ecological dynamics of strain B25 may provide insights into its interactions with both the host and other microbial species, particularly in relation to the maintenance of gastric health or the development of gastrointestinal conditions. Understanding these interactions could further elucidate the broader implications of H. pylori strains in human health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRS00000000.1 Bac0018466 Helicobacter pylori strain B23+S27R2:R48 "Helicobacter pylori strain B23+S27R2:R48 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is adapted to a host-associated habitat, typically residing in the gastric mucosa of its host. Its optimal growth temperature is approximately 37.0°C, which aligns with the physiological temperature of the human body, indicating its adaptation to a mammalian environment. As a microaerophilic organism, H. pylori strain B23+S27R2:R48 requires reduced levels of oxygen for growth, which is consistent with the oxygen-limited conditions found in the gastric niche.↵↵The unique morphology and physiological traits of this strain underscore its specialized adaptations to the gastric environment, where it can thrive despite the presence of gastric acid and varying oxygen levels. These characteristics may allow H. pylori to maintain a stable population within the host, potentially influencing host-microbe interactions and contributing to the dynamic microbial ecosystem of the stomach. Understanding the specific adaptations of H. pylori strain B23+S27R2:R48 enhances our knowledge of its role in the gastric microbiome and its potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QBRU00000000.1 Bac0018467 Acidovorax sp. 107 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 107 2135638 QBTZ00000000.1 Bac0018468 Yoonia sediminilitoris strain DSM 29955 "Yoonia sediminilitoris strain DSM 29955 is a Gram-negative, rod-shaped bacterium that exhibits non-spore-forming characteristics and thrives optimally at a temperature of 25.0°C. This strain is part of a broader group of microorganisms that are adapted to specific environmental conditions, particularly those found in sedimentary habitats. The Gram-negative nature of Y. sediminilitoris indicates a distinctive cell envelope structure, which typically includes an outer membrane containing lipopolysaccharides, contributing to its resilience in various ecological niches. ↵↵As a non-spore-forming organism, Y. sediminilitoris may rely on alternative survival strategies, such as metabolic versatility or rapid replication, to withstand environmental stressors. The optimal growth temperature of 25.0°C suggests a preference for moderate thermal conditions, which are common in many natural aquatic environments. ↵↵Given these traits, Yoonia sediminilitoris strain DSM 29955 may play a role in biogeochemical cycles within sediment ecosystems, particularly in the degradation of organic matter or the cycling of nutrients. Its adaptation to specific thermal conditions further underscores its potential ecological role in environments where temperature fluctuations can significantly impact microbial community dynamics. This insight highlights the importance of understanding the physiological traits of such microorganisms in the context of their ecological functions and interactions within sedimentary ecosystems." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Yoonia Yoonia sediminilitoris Gram-negative rod non-motile 25 mesophilic non-spore-forming 1286148 QBUD00000000.1 Bac0018469 Pseudomonas sp. GV105 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. GV105 2135759 QBUF00000000.1 Bac0018470 Novosphingobium sp. GV027 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. GV027 2135689 QBUI00000000.1 Bac0018471 Candidatus Aquiluna sp. XM-24bin5 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aquiluna Candidatus Aquiluna sp. XM-24bin5 2133953 QCWE00000000.1 Bac0018472 Synechococcus sp. XM-24 Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. XM-24 1979185 QCWF00000000.1 Bac0018473 Altererythrobacter sp. XM-24bin4 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Altererythrobacter Altererythrobacter sp. XM-24bin4 2133952 QCWG00000000.1 Bac0018474 Marivita sp. XM-24bin2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Marivita Marivita sp. XM-24bin2 2133951 QCWH00000000.1 Bac0018475 Fluviicola sp. XM-24bin1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Fluviicola Fluviicola sp. XM-24bin1 2133950 QCWI00000000.1 Bac0018476 Geobacillus sp. LYN3 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. LYN3 2169582 QCWL00000000.1 Bac0018477 Acinetobacter baumannii strain SH37 "Acinetobacter baumannii strain SH37 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C, a condition that aligns with the physiological temperature of the human body, suggesting a potential adaptation to human-associated environments. As a chemoheterotroph, A. baumannii strain SH37 requires organic compounds for energy and carbon, revealing its ecological versatility in various habitats. ↵↵Being an aerobe, this strain necessitates the presence of oxygen for its metabolic processes, which allows it to inhabit environments where oxygen is available, such as soil, water, or hospital settings. The ability of A. baumannii to exploit diverse ecological niches may contribute to its persistence and resilience in both natural and anthropogenic ecosystems. This adaptability underlines the importance of understanding the ecological roles of such microbes, particularly in contexts where they may interact with human health or contribute to biogeochemical cycles." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 QCXV00000000.1 Bac0018478 Sphingobacterium athyrii strain M46 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium athyrii 2152717 QCXX00000000.1 Bac0018479 Pelagivirga sediminicola strain BH-SD19 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pelagivirga Pelagivirga sediminicola 2170575 QCYH00000000.1 Bac0018480 Chitinophaga parva strain LY-1 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga parva 2169414 QCYK00000000.1 Bac0018481 Labrenzia sp. 011 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Labrenzia Labrenzia sp. 011 2171494 QCYM00000000.1 Bac0018482 Microvirga sp. KLBC 81 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga sp. KLBC 81 1862707 QDAH00000000.1 Bac0018483 Klebsiella michiganensis strain IS1015-72 "Klebsiella michiganensis strain IS1015-72 is a Gram-negative, nonsporulating rod that exhibits facultative anaerobic metabolism, utilizing a chemoheterotrophic energy source. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for conditions that are typical of mammalian hosts, but its ability to survive in multiple habitats suggests a versatile ecological niche. ↵↵As a facultative anaerobe, K. michiganensis strain IS1015-72 can adapt to varying oxygen levels, allowing it to exploit different environments ranging from oxygen-rich to oxygen-depleted conditions. This adaptability may contribute to its survival in diverse ecological settings, which can include soil, water, and potentially within host organisms. The strain's metabolic flexibility, combined with its nonsporulating nature, suggests that it relies on other survival strategies in fluctuating environments.↵↵The ability of K. michiganensis strain IS1015-72 to thrive in multiple habitats while relying on organic compounds for energy underscores its potential role in nutrient cycling and its interactions within microbial communities. Further studies could elucidate its specific ecological roles and contributions to ecosystem functioning, particularly in environments where organic materials are abundant." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 QDDS00000000.1 Bac0018484 Sphingomonas sp. TPD3009 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. TPD3009 2171625 QDFK00000000.1 Bac0018485 Agrobacterium tumefaciens strain TPD7005 "Agrobacterium tumefaciens strain TPD7005 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments and has an optimal growth temperature of 25.0°C. This strain, like other members of the Agrobacterium genus, is known for its remarkable ability to interact with plant systems, although specific interactions or ecological roles of strain TPD7005 have not been detailed in the current data.↵↵The habitat of A. tumefaciens strain TPD7005 is described as multiple, indicating its potential adaptability to various environmental conditions. This flexibility may allow the strain to occupy diverse niches, potentially contributing to its survival and proliferation in different ecosystems.↵↵While the strain is recognized primarily for its association with plants, further insights into its ecological role could be derived from studying its interactions with both biotic and abiotic factors in its habitats. Understanding these dynamics may provide valuable information on the broader implications of A. tumefaciens TPD7005 in microbial ecology and its potential applications in biotechnology and agriculture." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium tumefaciens Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living 358 QDFL00000000.1 Bac0018486 Microbacterium sp. TPD7012 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. TPD7012 2171975 QDFV00000000.1 Bac0018487 Micromonospora ureilytica strain LB19 "Micromonospora ureilytica strain LB19 is a Gram-positive, spore-forming bacterium that thrives under aerobic conditions, utilizing organic compounds as its energy source. Optimal growth is observed at a temperature of 29.0°C, suggesting that this strain is well-suited to environments that provide moderate thermal conditions. As a member of the genus Micromonospora, this strain is likely to exhibit the characteristic filamentous morphology associated with many of its relatives, which are known for their role in soil and decaying organic matter ecosystems.↵↵The ability of strain LB19 to form spores indicates a potential for resilience in fluctuating environmental conditions, allowing it to survive periods of nutrient limitation or desiccation. As an organotrophic chemotroph, M. ureilytica strain LB19 is capable of metabolizing a variety of organic substrates, which may contribute to its ecological role in nutrient cycling and organic matter decomposition in its natural habitat. ↵↵This bacterium's traits suggest that it could play a significant role in the breakdown of complex organic compounds in soil or similar environments, potentially enhancing soil fertility and influencing microbial community dynamics. Understanding the specific metabolic pathways and ecological interactions of Micromonospora ureilytica strain LB19 could provide insights into its functional contributions to soil health and ecosystem stability." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora ureilytica Gram-positive non-motile aerobic 29 organotroph; chemotroph mesophilic spore-forming 709868 QDGB00000000.1 Bac0018488 Bifidobacterium animalis subsp. lactis strain CF3_2 CF3_2_435 "Bifidobacterium animalis subsp. lactis strain CF3_2 CF3_2_435 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments and exhibits optimal growth at a temperature of 39.0°C. This strain, belonging to a species commonly found in various habitats, suggests a versatile ecological adaptability, likely contributing to its prevalence in diverse niches, including the gastrointestinal tracts of mammals.↵↵As a member of the Bifidobacterium genus, this strain is associated with beneficial roles in gut health, although specific functional traits related to fermentation or metabolic pathways are not detailed in the provided data. The anaerobic oxygen requirement indicates that this strain may play a significant role in fermentative processes within its ecological niche, potentially influencing the microbial community structure and metabolic activities.↵↵The ability to thrive at a slightly elevated temperature of 39.0°C may suggest an adaptation to host-associated environments, where such temperatures can be typical. This characteristic could enhance the strain's competitiveness in colonizing specific habitats, particularly those associated with warm-blooded animals. Overall, Bifidobacterium animalis subsp. lactis strain CF3_2 CF3_2_435 exemplifies the functional diversity of the Bifidobacterium genus, reflecting its potential importance in maintaining gut microbial balance and health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis Positive Rod No 1 1 Anaerobe 39 Mesophilic Multiple Free living Nonsporulating 302911 QDIV00000000.1 Bac0018489 Helicobacter pylori strain B657-A1 "Helicobacter pylori strain B657-A1 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which is consistent with its adaptation to a host-associated habitat, typically found within the gastric mucosa of mammals. ↵↵As a member of the Helicobacter genus, H. pylori exhibits specialized metabolic capabilities that allow it to survive in the acidic environment of the stomach, where it plays a significant role in the complex interactions of the gastric microbiome. The microaerophilic nature of H. pylori strain B657-A1 indicates its requirement for reduced oxygen levels, which further defines its ecological niche within the host's gastrointestinal tract. ↵↵The ability of H. pylori strain B657-A1 to colonize the gastric epithelium underscores its potential for influencing host physiology, including acid secretion and immune responses. Given its specific growth conditions and unique morphology, this strain exemplifies the intricate relationships that exist between host-associated bacteria and their environments, highlighting the importance of studying microbial traits in understanding microbial ecology and host-microbe interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QDJI00000000.1 Bac0018490 Helicobacter pylori strain B508A-T2A "Helicobacter pylori strain B508A-T2A is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0 °C, which aligns with its adaptation to a host-associated habitat, commonly residing in the gastric mucosa of various mammals, including humans. ↵↵As a member of the Helicobacter genus, strain B508A-T2A demonstrates the typical characteristics of this group, including its distinctive helical morphology and specialized oxygen requirements, enabling it to survive in the oxygen-limited environment of the stomach. The microaerophilic nature of this strain suggests that it may utilize limited oxygen concentrations for metabolic processes, which is critical for its growth and colonization in the host gastric environment.↵↵The unique ecological niche occupied by Helicobacter pylori strain B508A-T2A highlights its potential role in the complex microbial communities within the gastrointestinal tract. The ability of this strain to thrive in the acidic environment of the stomach, while requiring microaerophilic conditions, underscores the evolutionary adaptations of Helicobacter species to their host-associated habitats. Further studies on strain B508A-T2A could provide insights into its interactions with the host microbiome and its influence on gastric physiology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QDJM00000000.1 Bac0018491 Helicobacter pylori strain B464A "Helicobacter pylori strain B464A is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated environments. H. pylori is well-documented for its colonization of the gastric mucosa in various hosts, contributing to its relevance in studies of gastrointestinal microbiota. ↵↵The microaerophilic nature of strain B464A indicates that it requires reduced oxygen levels, which is typical for many members of the Helicobacter genus. This adaptation allows it to survive in the oxygen-limited environments of the stomach, where it can persist and interact with the host's immune responses. The strain's single-cell arrangement may facilitate its motility and ability to navigate the viscous gastric environment, potentially influencing its colonization efficiency and interactions with host tissues.↵↵Ultimately, the traits of Helicobacter pylori strain B464A highlight its specialized adaptation to the gastric niche, suggesting a unique evolutionary path among gastrointestinal microbiota. This specialization may play a critical role in its ecological relationships within the host, influencing both microbial community dynamics and host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QDJP00000000.1 Bac0018492 Helicobacter pylori strain B444A "Helicobacter pylori strain B444A is a Gram-negative bacterium characterized by its spirilla shape and occurrence as single cells. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found in the human gastric environment, where it is predominantly associated with its host. As a microaerophilic organism, H. pylori strain B444A requires reduced levels of oxygen for growth, adapting to the low-oxygen conditions within the stomach lining.↵↵The strain's Gram-negative cell wall structure contributes to its resilience and ability to colonize the acidic gastric niche. Its spiral morphology is thought to facilitate motility, allowing it to navigate through the viscous mucus layer of the stomach to reach epithelial surfaces. While the specific pathogenicity of strain B444A is not detailed here, the general attributes of H. pylori suggest a potential role in gastric colonization and associated gastrointestinal conditions.↵↵Ecologically, H. pylori strain B444A exemplifies the intricate relationships between microbial life and host organisms, highlighting its adaptation to a highly specialized niche within the human body. This adaptation not only underscores the significance of microaerophilic conditions in sustaining such organisms but also emphasizes the evolutionary pressures that shape the survival strategies of host-associated microbes in varying environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QDJQ00000000.1 Bac0018493 Helicobacter pylori strain B355 "Helicobacter pylori strain B355 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated organism, typically found in the gastric environment of mammals. ↵↵The microaerophilic nature of H. pylori strain B355 indicates that it requires lower levels of oxygen for growth compared to atmospheric conditions, which is essential for its survival in the stomach's unique environment where oxygen concentrations are limited. The spiral shape of this bacterium may facilitate motility, allowing it to navigate through the viscous gastric mucus layer to colonize the gastric epithelium.↵↵Given its specific adaptations to a host-associated habitat and its optimal growth temperature, H. pylori strain B355 exemplifies the complex interplay between microbial life and host physiology, particularly in the context of gastrointestinal health. Its microaerophilic requirement suggests a finely tuned evolutionary response to the gastric environment, potentially influencing its interactions with host immune responses and other microbial communities within the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QDJS00000000.1 Bac0018494 Sphingobacterium corticibacter strain 2c-3 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium corticibacter 2171749 QDKG00000000.1 Bac0018495 Brenneria corticis strain CFCC 11842 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria corticis 2173106 QDKH00000000.1 Bac0018496 Brenneria roseae subsp. americana strain LMG 27715 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria roseae 1508507 QDKJ00000000.1 Bac0018497 Caulobacter radicis strain 736 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter radicis 2172650 QDKP00000000.1 Bac0018498 Caulobacter endophyticus strain 774 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter endophyticus 2172652 QDKQ00000000.1 Bac0018499 Salmonella enterica subsp. enterica serovar Give strain 207 "Salmonella enterica subsp. enterica serovar Give strain 207 is a Gram-negative bacterium characterized by its spirilla shape and the ability to form chains or exist as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the average body temperature of many hosts, suggesting a strong association with warm-blooded animals. As a chemoorganotroph, S. enterica serovar Give strain 207 utilizes organic compounds as an energy source, aligning with its host-associated habitat. ↵↵This strain exhibits microaerophilic oxygen requirements, indicating it thrives in environments with reduced oxygen levels, which is often the case in the gastrointestinal tracts of various hosts. Such adaptations may confer advantages in both colonization and survival within nutrient-rich but oxygen-limited environments, potentially impacting its interactions with the host microbiome. Understanding the ecological role and metabolic capabilities of this strain may provide insights into its behavior in natural and clinical settings, as well as its potential effects on host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 46626 QDMS00000000.1 Bac0018500 Salinibacterium hongtaonis strain S1194 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Homoserinimonas Homoserinimonas hongtaonis 2079791 QEEX00000000.1 Bac0018501 Mycetocola zhujimingii strain 622 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola zhujimingii 2079792 QEFB00000000.1 Bac0018502 Candidatus Nanobsidianus stetteri Nanobdellati Nanobdellota Candidatus Nanoarchaeia Nanoarchaeales Nanopusillaceae Candidatus Nanobsidianus Candidatus Nanobsidianus stetteri 1294122 QEFP00000000.2 Bac0018503 Helicobacter pylori strain VCT187-B122 "Helicobacter pylori strain VCT187-B122 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its adaptation to a host-associated habitat, particularly within the human gastric environment. As a microaerophilic organism, H. pylori strain VCT187-B122 requires reduced levels of oxygen for optimal growth, reflecting its specific ecological niche where it resides in the gastric mucosa.↵↵The unique morphology and oxygen requirements of H. pylori strain VCT187-B122 suggest a specialized adaptation to the acidic gastric environment, allowing it to survive and persist in conditions that are hostile to many other microorganisms. Its microaerophilic nature indicates that it occupies a unique ecological role within the gastric microbiome, potentially influencing gastric health and disease dynamics. Understanding the traits of this strain can provide insights into the broader implications of H. pylori in human health, particularly in relation to its ecological interactions within the stomach and its potential effects on the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGD00000000.1 Bac0018504 Helicobacter pylori strain MSL190 "Helicobacter pylori strain MSL190 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives in microaerophilic conditions, indicating that it requires reduced oxygen levels for optimal growth. The optimal temperature for H. pylori MSL190 is 37.0°C, aligning with its habitat, which is host-associated, suggesting an adaptation to the warm environment of the human stomach.↵↵H. pylori is well known for its role in gastric health and disease, often colonizing the gastric epithelium. The microaerophilic nature of strain MSL190 may confer an advantage in the acidic environment of the stomach, where it can evade the host's immune responses and establish itself effectively. Understanding the specific traits of this strain can provide insights into the ecological dynamics of H. pylori within its host, particularly in the context of microbial interactions and competition for resources in the gastric niche. ↵↵Future studies may explore how strain MSL190 interacts with the host's immune system and its potential role in the microbial community of the gastrointestinal tract. This could lead to a deeper understanding of the ecological balance within the stomach and the implications for human health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGF00000000.1 Bac0018505 Helicobacter pylori strain JGF25 "Helicobacter pylori strain JGF25 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and singular cell arrangement. This strain optimally thrives at 37.0°C, indicating its adaptation to the physiological conditions typically found within host organisms. H. pylori is known to inhabit the gastric mucosa of various hosts, suggesting a specific ecological niche that is closely associated with animal or human physiology.↵↵The microaerophilic nature of H. pylori strain JGF25 implies a requirement for reduced oxygen levels, which aligns with its survival in the highly acidic environment of the stomach. This trait may confer advantages in colonization and persistence within such a challenging habitat, where it can evade host immune responses and establish a stable population.↵↵The unique combination of its Gram-negative cell wall structure and spirilla morphology may also play a role in its pathogenic mechanisms, potentially influencing its interactions with the host's immune system. The ecological insight derived from the traits of H. pylori strain JGF25 underscores the bacterium's specialized adaptation to the gastric environment, where its microaerophilic requirement and optimal growth temperature reflect a finely tuned relationship with its host, potentially impacting the microbiome composition and overall health of the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGJ00000000.1 Bac0018506 Helicobacter pylori strain JDX15 "Helicobacter pylori strain JDX15 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting it is well-adapted to a host-associated habitat. As a microaerophilic organism, H. pylori strain JDX15 requires reduced oxygen levels for growth, indicating a specialized niche within the gastric environment of its host, where oxygen concentrations are lower than in the atmosphere.↵↵The unique morphological and physiological traits of strain JDX15 enhance its ability to persist in the harsh conditions of the stomach, including the acidic pH and the presence of bile salts. Its adaptation to a microaerophilic lifestyle may also play a crucial role in its survival and colonization, as the bacterium can utilize specific metabolic pathways that enable it to thrive in such a setting. Understanding these traits provides insight into the ecological dynamics of H. pylori, particularly in relation to its interactions with gastric mucosa and host immune responses. The ability of strain JDX15 to maintain viability in a microaerobic environment emphasizes the intricate adaptations evolved by Helicobacter species to occupy specialized niches within their hosts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGK00000000.1 Bac0018507 Helicobacter pylori strain B712A "Helicobacter pylori strain B712A is a microaerophilic, Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, primarily found in the gastric mucosa of humans and other mammals. ↵↵As a member of the Helicobacter genus, H. pylori is notable for its ability to colonize the acidic environment of the stomach, where it can establish a persistent infection. The microaerophilic nature of this organism indicates that it requires reduced levels of oxygen for growth, which is consistent with the low-oxygen conditions typically present in the gastric environment. ↵↵The unique morphology of H. pylori, characterized by its spirilla shape, is thought to contribute to its motility and ability to navigate through the viscous gastric mucus. This adaptation may facilitate its colonization and survival in a challenging environment where pH levels and host defenses can vary significantly. ↵↵Understanding the specific traits of Helicobacter pylori strain B712A enhances our knowledge of its ecological niche and physiological adaptations, which may provide insights into its interactions with the host immune system and its role in gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGO00000000.1 Bac0018508 Helicobacter pylori strain B455 "Helicobacter pylori strain B455 is a Gram-negative bacterium characterized by its spirilla shape and singular cellular arrangement. This microbe thrives optimally at 37.0°C, which aligns with its adaptation to a host-associated habitat, suggesting a close relationship with its biological environment. Strain B455 exhibits microaerophilic oxygen requirements, indicating that it necessitates low levels of oxygen for growth and metabolism.↵↵The microbe's spiral morphology is often associated with motility, which may facilitate its colonization in the gastric niche of its host. This trait could enhance its ability to navigate through the viscous gastric mucus layer, positioning it effectively in environments where it can exploit nutrients and evade host defenses. The microaerophilic nature of H. pylori strain B455 suggests a specialized metabolic adaptation that enables it to thrive in the acidic gastric environment, where oxygen levels are limited.↵↵Considering these traits, H. pylori strain B455 provides an intriguing example of microbial adaptation to specific ecological niches within the host. Its unique combination of morphology, temperature preference, and oxygen requirements highlights the complex interactions between microbial life and host physiology, reinforcing the importance of studying such strains to understand their roles in health and disease dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGV00000000.1 Bac0018509 Helicobacter pylori strain B448 "Helicobacter pylori strain B448 is a Gram-negative microbe characterized by its spirilla shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, reflecting its adaptation to the human body, where it is commonly found in association with the gastric epithelium. As a microaerophilic bacterium, H. pylori strain B448 requires reduced levels of oxygen for growth, which is consistent with its habitat in the stomach, where oxygen concentrations are lower than in the ambient environment.↵↵The unique morphology of H. pylori, coupled with its specific growth temperature and oxygen requirements, suggests a refined evolutionary adaptation to survive in the hostile acidic environment of the stomach. Understanding the ecological niche of H. pylori strain B448 contributes to the broader knowledge of host-associated bacteria and their roles in human health and disease. Its presence in the gastric milieu may influence local pH levels, nutrient availability, and interactions with the host microbiome, potentially impacting gastric function and overall digestive health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGW00000000.1 Bac0018510 Helicobacter pylori strain B400 "Helicobacter pylori strain B400 is a Gram-negative bacterium characterized by its spiral-shaped morphology and presence as single cells. This microbe exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels, which is consistent with its typical habitat associated with the host stomach. The optimal growth temperature for strain B400 is around 37.0°C, aligning with the physiological conditions found in the human body. ↵↵The spiral shape of H. pylori is thought to facilitate its motility and colonization within the gastric mucosa, allowing it to navigate the viscous environment of the stomach effectively. As a host-associated organism, H. pylori strain B400 is adapted to survive and proliferate in the acidic conditions of the gastric environment, which may provide insights into its ecological niche within the digestive system. Understanding its specific adaptations, such as its microaerophilic nature and optimal growth temperature, can contribute to a broader comprehension of its role in the host’s microbiome and potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGX00000000.1 Bac0018511 Helicobacter pylori strain B368 "Helicobacter pylori strain B368 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is microaerophilic, indicating a preference for environments with reduced oxygen levels, which aligns with its natural habitat of being host-associated. The optimal growth temperature for H. pylori strain B368 is approximately 37.0°C, reflecting its adaptation to the human stomach, where it can thrive in the warm, acidic conditions typically found in this environment.↵↵As a member of the Helicobacter genus, this strain is part of a broader group of bacteria known for their ability to colonize the gastric mucosa. The microaerophilic nature of H. pylori strain B368 suggests that it may utilize metabolic pathways that are efficient under low-oxygen conditions, which could play a role in its survival and persistence within its host. Understanding the specific ecological niches that H. pylori strain B368 occupies may provide insights into its interactions with the host’s microbiome and its potential impact on gastrointestinal health. Further investigation into the unique adaptations of this strain in relation to its microaerophilic requirements could enhance our understanding of its ecological role and metabolic capabilities within the gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEGY00000000.1 Bac0018512 Helicobacter pylori strain B345 "Helicobacter pylori strain B345 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, reflecting its adaptation to the human host environment, where it is typically found associated with the gastric epithelium. ↵↵As a member of the Helicobacter genus, strain B345 is likely to exhibit motility due to its helical morphology, which may facilitate its navigational capabilities within the viscous gastric mucus. Microaerophilic organisms like H. pylori require reduced oxygen levels for growth, a condition commonly found in the gastric niche, which suggests a specialized adaptation to the low-oxygen environment of the stomach.↵↵The unique combination of traits in Helicobacter pylori strain B345, particularly its Gram-negative status and spirilla form, may influence its interactions with the host immune system and its colonization strategies within the gastric habitat. The ability to thrive in a microaerophilic environment further emphasizes its specialized role in the microbiome of the human digestive tract, where it may contribute to complex host-microbe interactions. Understanding these traits can provide insights into the ecological dynamics of this strain and its potential influences on gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEHC00000000.1 Bac0018513 Helicobacter pylori strain B344 "Helicobacter pylori strain B344 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at 37.0°C, aligning with the typical human body temperature, which suggests its adaptation to a host-associated habitat. H. pylori is known to possess microaerophilic oxygen requirements, indicating that it thrives in environments with lower oxygen levels than are present in the atmosphere.↵↵As a member of the Helicobacter genus, strain B344 is likely to be found primarily in the gastric mucosa of its host, where it may play a role in the complex interactions within the gastrointestinal microbiome. The microaerophilic nature of H. pylori indicates that it may engage in unique metabolic pathways that are distinct from strictly aerobic or anaerobic organisms, potentially providing insights into its survival strategies within the acidic environment of the stomach.↵↵Further studies on H. pylori strain B344 could elucidate its specific roles in host interactions and contribute to our understanding of how this microbe maintains its presence in a harsh environment while also affecting the overall microbial community within the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEHD00000000.1 Bac0018514 Helicobacter pylori strain B274 "Helicobacter pylori strain B274 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe exhibits an optimal growth temperature of 37.0°C, which aligns with its habitat as a host-associated organism. H. pylori strain B274 is classified as microaerophilic, indicating that it thrives in environments with reduced oxygen levels, a trait that is crucial for its survival within the gastric environment of its hosts.↵↵The unique spiral morphology of H. pylori is thought to facilitate its motility through the viscous mucus layer of the stomach, potentially influencing its ability to colonize gastric epithelium. The microaerophilic nature of this strain suggests a specialized adaptation to the gastric microenvironment, where oxygen concentrations are lower than in the atmosphere. This adaptation may play a significant role in its ecological niche, allowing it to persist in the acidic conditions of the stomach while avoiding the immune responses typically elicited by higher oxygen-tolerant species.↵↵Understanding the characteristics of H. pylori strain B274 contributes to the broader knowledge of microbial life within the human gastrointestinal tract and highlights the intricate relationships between host and microbe in maintaining homeostasis. Further studies could elucidate the implications of its microaerophilic metabolism and spiral morphology in both health and disease contexts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEHG00000000.1 Bac0018515 Helicobacter pylori strain APR133 "Helicobacter pylori strain APR133 is a Gram-negative bacterium characterized by its spirilla shape and a tendency to exist as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within the gastric environment of its hosts. As a microaerophilic organism, H. pylori strain APR133 requires reduced levels of oxygen for growth, indicating its adaptation to the oxygen-limited niches typically found in the stomach lining.↵↵The host-associated habitat of H. pylori strain APR133 suggests a close relationship with its host, where it may play a role in the complex microbiome of the gastrointestinal tract. The microaerophilic nature of this strain may provide insights into its survival strategies within the acidic gastric niche, where it can evade the harsh conditions and compete effectively against other microbial inhabitants. Understanding the specific traits of H. pylori strain APR133 can contribute to broader research on host-microbe interactions and the ecological dynamics within the stomach, particularly in terms of its adaptation mechanisms and potential roles in health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEHI00000000.1 Bac0018516 Helicobacter pylori strain AFR58 "Helicobacter pylori strain AFR58 is a Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to host-associated environments, likely within the gastric mucosa of mammals. As a microaerophilic organism, H. pylori strain AFR58 requires a low concentration of oxygen for growth, which aligns with the hypoxic conditions typically found in the stomach.↵↵The unique morphology of this strain, along with its specific oxygen requirements, suggests a specialized niche within the host's gastric environment, where it may play a significant role in the complex microbial community. Understanding the characteristics of H. pylori strain AFR58 can provide insights into its interactions with the host and potential implications for gastric health. Furthermore, the adaptation to microaerophilic conditions may influence its metabolic pathways and colonization strategies, highlighting the importance of environmental factors in shaping the biology of this strain." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QEHJ00000000.1 Bac0018517 Pseudarthrobacter sp. AG30 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter sp. AG30 2249742 QEHL00000000.1 Bac0018518 Chryseobacterium sp. HMWF035 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. HMWF035 2056868 QEHP00000000.1 Bac0018519 Microbacterium sp. Gd 4-13 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Gd 4-13 2173179 QEIJ00000000.1 Bac0018520 Streptomyces sp. IB2014 011-12 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. IB2014 011-12 2174847 QEIK00000000.1 Bac0018521 Staphylococcus pseudintermedius strain ST525 1 "Staphylococcus pseudintermedius strain ST525 1 is a Gram-positive cocci bacterium characterized by its arrangement in clusters and singles. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is typically associated with hosts, indicating its role as a commensal or potentially pathogenic organism within specific animal populations. ↵↵S. pseudintermedius strains, including ST525 1, are known to inhabit the skin and mucosal surfaces of various mammals, particularly dogs, where they may contribute to the normal microbiota. The optimal growth temperature for this strain is notably low at 3.0°C, suggesting that it might exhibit resilience in cooler environments or during specific conditions within its host habitat. ↵↵Given its host-associated nature, S. pseudintermedius strain ST525 1 may play a significant role in the balance of microbial communities on the skin and mucous membranes of its host, potentially influencing host health and susceptibility to other infections. This insight highlights the importance of understanding the ecological dynamics of such bacteria, especially in the context of animal health and veterinary microbiology." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 283734 QEIT00000000.1 Bac0018522 Victivallis vadensis strain DSM 14823 "Victivallis vadensis strain DSM 14823 is a Gram-negative, spherical bacterium characterized by its distinct morphological and staining properties. As a member of the microbial community, its Gram-negative nature indicates a complex cell wall structure, which typically includes an outer membrane containing lipopolysaccharides. This structural feature may influence its interactions with the surrounding environment, including its resilience to certain antimicrobial agents.↵↵The spherical shape of V. vadensis strain DSM 14823 is indicative of coccoid morphology, which can have implications for its metabolic processes and ecological roles. Such morphology is often associated with specific survival strategies in various environments, potentially facilitating nutrient uptake and cellular division in constrained habitats.↵↵While the complete ecological role and potential biotechnological applications of Victivallis vadensis strain DSM 14823 remain to be elucidated, its classification within the broader context of microbial diversity suggests potential interactions with other microorganisms. Its properties may contribute to the dynamics of microbial communities, particularly in environments where Gram-negative bacteria are prevalent. Further research into its metabolic pathways and ecological interactions could provide valuable insights into the functional roles of spherical Gram-negative bacteria in various ecosystems." Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis vadensis Gram-negative sphere non-motile 172901 QEKH00000000.1 Bac0018523 Intestinimonas butyriciproducens strain DSM 26588 Bacillati Bacillota Clostridia Eubacteriales Intestinimonas Intestinimonas butyriciproducens No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1297617 QEKK00000000.1 Bac0018524 Pusillimonas noertemannii strain DSM 10065 "Pusillimonas noertemannii strain DSM 10065 is a Gram-negative, rod-shaped bacterium that exhibits strict aerobic growth requirements. This strain is characterized by its morphological features typical of Gram-negative bacteria, which include a thin peptidoglycan layer surrounded by an outer membrane. As an aerobic organism, P. noertemannii relies on oxygen for its metabolic processes, suggesting an adaptation to environments where oxygen is readily available.↵↵The rod shape of P. noertemannii may confer advantages in nutrient acquisition and motility, potentially allowing it to thrive in specific ecological niches. The precise ecological role of this strain remains to be further elucidated; however, its aerobic nature suggests it may be involved in processes such as organic matter decomposition in oxygen-rich environments.↵↵Understanding the traits of Pusillimonas noertemannii DSM 10065 contributes to the broader knowledge of microbial diversity and the functional roles that Gram-negative bacteria play in various ecosystems. The unique adaptations of this strain to aerobic conditions may provide insights into the metabolic pathways and ecological interactions of bacteria within oxygen-saturated habitats." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pusillimonas Pusillimonas noertemannii Gram-negative rod motile aerobic 305977 QEKO00000000.1 Bac0018525 Tamilnaduibacter salinus strain DSM 28688 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Tamilnaduibacter Tamilnaduibacter salinus 1484056 QEKQ00000000.1 Bac0018526 Pantoea ananatis strain PNA 14-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea ananatis 553 QEKS00000000.1 Bac0018527 Acidovorax sp. 99 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 99 2135634 QEKU00000000.1 Bac0018528 Actinomycetospora cinnamomea strain DSM 45771 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora cinnamomea 663609 QEKW00000000.1 Bac0018529 Methylobacterium radiotolerans strain DSM 760 "Methylobacterium radiotolerans strain DSM 760 is a Gram-negative, aerobic bacterium recognized for its remarkable resilience to ionizing radiation. This strain exhibits a unique metabolic capability, primarily utilizing methanol as a carbon source, which is characteristic of the Methylobacterium genus. The strain's capacity to thrive in aerobic environments indicates a dependency on oxygen for its metabolic processes, positioning it within ecosystems that are rich in oxygen availability.↵↵The Gram-negative nature of M. radiotolerans DSM 760 suggests a complex cell envelope structure, which includes an outer membrane that can contribute to its environmental resilience and metabolic versatility. This structural feature may play a role in its ability to withstand oxidative stress, a trait that is particularly relevant given its exposure to radiation.↵↵Furthermore, the strain's potential applications in bioremediation and bioenergy production are of interest, particularly in contexts where methanol may be present as a pollutant or as a feedstock for microbial metabolism. The ability of M. radiotolerans DSM 760 to metabolize methanol while enduring harsh conditions highlights its ecological significance in adapting to and thriving in environments impacted by radiation and organic pollutants.↵↵Ultimately, Methylobacterium radiotolerans strain DSM 760 exemplifies the adaptability of microbial life, showcasing how certain bacteria can exploit specific substrates while maintaining resilience in challenging environmental niches, thereby contributing to ecosystem dynamics and biogeochemical cycles." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium radiotolerans negative aerobic 31998 QEKZ00000000.1 Bac0018530 Helicobacter pylori strain B518 "Helicobacter pylori strain B518 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat within the host, suggesting a specialized adaptation to the warm, nutrient-rich environment of the gastric mucosa. As a member of the Helicobacter genus, strain B518's morphology and physiological requirements indicate its potential role in the complex interactions within the gastrointestinal tract.↵↵The microaerophilic nature of Helicobacter pylori strain B518 implies that it requires reduced oxygen levels for optimal growth, a characteristic that may influence its ecological niche within the host. This oxygen requirement likely facilitates its survival in the gastric environment, where oxygen concentrations are lower than in the surrounding tissues. The unique combination of its Gram-negative cell wall structure and spirilla morphology may also confer advantages in navigating the viscous mucus lining of the stomach.↵↵Understanding the traits of Helicobacter pylori strain B518 can provide insights into its ecological role and potential interactions with the host's immune system. The strain’s adaptation to a microaerophilic environment and its association with host tissues underscore the intricate evolutionary relationships that can exist between microbes and their hosts, contributing to the overall microbiome dynamics within the gastrointestinal ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QELB00000000.1 Bac0018531 Helicobacter pylori strain B319 "Helicobacter pylori strain B319 is a Gram-negative, microaerophilic bacterium characterized by its distinctive spirilla shape and singular cell arrangement. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to the host-associated habitats where it is typically found. ↵↵As a microaerophilic organism, H. pylori strain B319 requires reduced levels of oxygen for growth, which aligns with its natural habitat within the gastric mucosa of its host. The ability to survive in this specialized environment likely reflects a range of biochemical adaptations that allow it to navigate the challenging conditions of the stomach, including the acidic pH and the presence of bile salts.↵↵The ecological role of H. pylori strain B319 may extend beyond mere survival; its presence in the gastric environment can influence host gastric physiology and microbiome dynamics. Understanding the specific traits of this strain can provide insights into its interactions with the host and the potential implications for gastrointestinal health. The unique combination of its microaerophilic nature and spirilla morphology may contribute to its niche specialization within the gastric ecosystem, highlighting the intricate relationships between host-associated microbes and their environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 QELC00000000.1 Bac0018532 Xanthomonas vasicola strain R5P Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas vasicola 56459 QEMD00000000.2 Bac0018533 Escherichia coli strain B8S56 "Escherichia coli strain B8S56 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at 37.0°C, which aligns with the physiological temperature of many mammalian hosts, indicating a close association with host organisms.↵↵As a member of the E. coli species, strain B8S56 is likely adapted to survive within the gastrointestinal tracts of various hosts, where it can utilize a range of metabolic pathways to exploit available nutrients. The host-associated habitat of this strain suggests that it may engage in complex interactions with its microbial community, as well as with the host itself, potentially influencing digestive processes or nutrient absorption.↵↵This strain exemplifies the diversity found within the Escherichia genus, illustrating the ecological roles that such bacteria can play in their environments. The ability of E. coli strain B8S56 to inhabit a host-associated niche reflects the evolutionary adaptations that enable it to thrive in a dynamic and competitive microbial landscape, highlighting the intricate balance of microbial life within host ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QEMT00000000.1 Bac0018534 Streptococcus halitosis strain VT-4 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus halitosis 2172545 QEMY00000000.2 Bac0018535 Pasteurella langaaensis DSM 22999 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Alitibacter Alitibacter langaaensis 1122935 QENU00000000.1 Bac0018536 Hallella colorans strain DSM 100333 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Hallella Hallella colorans 1703337 QENY00000000.1 Bac0018537 Amnibacterium flavum strain M8JJ-5 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Amnibacterium Amnibacterium flavum 2173173 QEOP00000000.1 Bac0018538 Haemophilus haemolyticus strain C2001002324 "Haemophilus haemolyticus strain C2001002324 is a Gram-negative bacterium primarily located in the nasopharynx and upper respiratory tract of humans. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both oxygen-rich and oxygen-poor environments. The presence of H. haemolyticus in the nasopharyngeal microbiota suggests its potential role in the complex microbial community of the upper respiratory tract, where it may interact with other commensal and pathogenic organisms.↵↵Given its habitat, H. haemolyticus may contribute to the maintenance of mucosal health and serve as a part of the innate immune defense by competing with pathogens for resources and space. Understanding the specific interactions and dynamics of this strain within its ecological niche may provide insights into the broader implications of microbial diversity in respiratory health. Further studies could elucidate its role in health and disease, particularly in relation to other members of the upper respiratory microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus haemolyticus Negative Facultative anaerobe nasopharynx; upper respiratory tract 726 QEPL00000000.1 Bac0018539 Haemophilus parainfluenzae strain C2004000280 "Haemophilus parainfluenzae strain C2004000280 is a Gram-negative, rod-shaped bacterium characterized by its ability to thrive in host-associated environments. This strain exhibits both aerobic and facultative anaerobic growth capabilities, allowing it to adapt to varying oxygen levels within its biological niche. ↵↵As a member of the genus Haemophilus, this microorganism is often found in the upper respiratory tract of humans and other animals, suggesting a potential role in commensal relationships within the host. Its Gram-negative cell wall structure is indicative of its sensitivity to certain antibiotics, which is a common feature among bacteria of this classification. ↵↵The facultative anaerobic nature of H. parainfluenzae strain C2004000280 implies that it can utilize oxygen when available but can also switch to anaerobic metabolism under low-oxygen conditions. This metabolic versatility may facilitate its survival in diverse microenvironments within the host, where oxygen availability can fluctuate. ↵↵Understanding the growth characteristics and ecological associations of Haemophilus parainfluenzae strain C2004000280 may provide insights into its role in the microbiome, particularly in relation to its interactions with other microbial species and its impact on host health. Further research into its ecological dynamics may reveal how it contributes to the overall balance of microbial communities in host environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 729 QEPO00000000.1 Bac0018540 Haemophilus parainfluenzae strain C2008001710 "Haemophilus parainfluenzae strain C2008001710 is a Gram-negative, rod-shaped bacterium that is predominantly host-associated and exhibits both aerobic and facultative anaerobic metabolic capabilities. This strain, a member of the genus Haemophilus, typically thrives in environments closely linked to host organisms, suggesting a potential symbiotic or commensal relationship with its hosts. ↵↵The Gram-negative nature of H. parainfluenzae is characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which may play a role in its interactions with host immune systems. Its rod shape is indicative of its cellular morphology, which is important for its motility and colonization abilities within various host environments.↵↵The facultative anaerobic capability of this strain allows it to adapt to varying oxygen levels, enabling it to survive in diverse niches within the host that may have fluctuating oxygen availability. This adaptability may confer advantages in colonizing different tissues or during shifts in the host's physiological conditions.↵↵Further investigation into the ecological role of H. parainfluenzae strain C2008001710 may reveal insights into microbial dynamics within host-associated microbiomes, particularly in understanding the balance between commensalism and potential opportunistic behavior in response to host health and environmental stressors." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 729 QEPW00000000.1 Bac0018541 Haemophilus parainfluenzae strain C2011020591 "Haemophilus parainfluenzae strain C2011020591 is a Gram-negative, rod-shaped bacterium that exhibits both aerobic and facultative anaerobic growth characteristics. This strain is host-associated, suggesting a potential symbiotic or commensal relationship with its host organism. The Gram-negative cell wall structure of H. parainfluenzae is significant, as it typically includes an outer membrane containing lipopolysaccharides, which can influence interactions with the host immune system.↵↵As a member of the genus Haemophilus, H. parainfluenzae is known for its requirement for specific growth factors, which may be obtained from host tissues or fluids. The ability to thrive in both aerobic conditions and in environments with limited oxygen availability underscores its metabolic versatility, enabling it to adapt to various niches within host organisms. ↵↵Understanding the ecological role of Haemophilus parainfluenzae strain C2011020591 could shed light on its contributions to the microbial community within the host, potentially affecting host health and disease states. The bacterium’s host-associated habitat indicates that it may play a role in maintaining microbial homeostasis or influencing the physiology of its host. Further research into this strain may reveal insights into its functional roles in microbial ecosystems and its interactions with other microorganisms in the host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus parainfluenzae Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living 729 QEQE00000000.1 Bac0018542 Haemophilus paraphrohaemolyticus strain C2014016342 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus paraphrohaemolyticus 736 QEQF00000000.1 Bac0018543 Haloferax sp. Atlit-48N Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-48N 2077198 QEQI00000000.1 Bac0018544 Pseudomonas sp. URIL14HWK12:I12 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URIL14HWK12:I12 1261628 QEQL00000000.1 Bac0018545 Corticimicrobacter populi strain 3d-2-2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Corticimicrobacter Corticimicrobacter populi 2175229 QETA00000000.1 Bac0018546 Salibaculum griseiflavum strain WDS4C29 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salibaculum Salibaculum griseiflavum 1914409 QETF00000000.1 Bac0018547 Comamonas sp. JNW Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. JNW 2170731 QETI00000000.1 Bac0018548 Dietzia maris strain AMT Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia maris 37915 QETM00000000.1 Bac0018549 Rhodococcus sp. AQ5-07 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. AQ5-07 2054902 QEUH00000000.1 Bac0018550 Caldibacillus debilis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Caldibacillus Caldibacillus debilis 301148 QEWE00000000.1 Bac0018551 Streptococcus parasanguinis strain NU87 "Streptococcus parasanguinis strain NU87 is a Gram-positive, nonsporulating bacterium characterized by its cocci shape and its arrangement in chains and pairs. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. S. parasanguinis is host-associated, suggesting that it is commonly found in close association with host organisms, potentially within various niches of the human microbiome.↵↵As a member of the Streptococcus genus, this strain may play a role in the complex microbial communities present in the oral cavity, where it is likely to interact with other microbial species. The presence of S. parasanguinis in the oral microbiome is of particular interest due to its potential influence on oral health and the development of dental biofilms. Its facultative anaerobic nature allows it to adapt to fluctuating oxygen levels within the oral environment, enabling it to survive and persist in diverse conditions.↵↵Research into S. parasanguinis strain NU87 may provide insights into its functional roles within the host-associated microbiota, particularly regarding its contributions to microbial homeostasis and the balance of commensal and pathogenic organisms. Understanding the specific ecological interactions and competitive dynamics of this strain could enhance our knowledge of microbial ecology and its implications for human health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1318 QEWI00000000.1 Bac0018552 Novacetimonas cocois strain WE7 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Novacetimonas Novacetimonas cocois 1747507 QEXL00000000.1 Bac0018553 Alcaligenes faecalis strain YBY "Alcaligenes faecalis strain YBY is a Gram-negative, rod-shaped bacterium primarily found in diverse environments, including fresh water, soil, and hospital settings. This strain exhibits an aerobic metabolism, indicating that it requires oxygen for growth and survival. Its presence in hospital environments suggests a potential role in both natural and artificial ecosystems, where it may interact with other microbial communities.↵↵The adaptability of A. faecalis strain YBY to various habitats—including aquatic environments and soil—highlights its ecological versatility. This organism's ability to thrive in hospital settings points to its potential significance in understanding microbial dynamics in these environments, where it may coexist with other microorganisms and contribute to the overall microbial landscape. Given its host-associated nature, further research into the interactions between A. faecalis strain YBY and other microbial species could provide insights into its ecological role and functional contributions in freshwater and hospital ecosystems. This adaptability underscores its potential importance in biogeochemical cycles and microbial ecology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes faecalis Negative Rod 1 Aerobe Fresh water; hospital environments; hospital settings; HostAssociated; soil; water Human 511 QEXO00000000.1 Bac0018554 Ardenticatenia bacterium Bacillati Chloroflexota Ardenticatenia Ardenticatenia bacterium 2099665 QEXY00000000.1 Bac0018555 Pararhodobacter marinus strain CIC4N-9 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pararhodobacter Pararhodobacter marinus 2184063 QEYD00000000.1 Bac0018556 Maritimibacter sp. 55A14 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Maritimibacter Maritimibacter sp. 55A14 2174844 QEYE00000000.1 Bac0018557 Pelagicola sp. LXJ1103 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Pelagicola sp. LXJ1103 2175247 QFAR00000000.1 Bac0018558 Ligilactobacillus salivarius strain A3iob "Ligilactobacillus salivarius strain A3iob is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is primarily associated with host environments, suggesting a potential symbiotic role in the microbiota of its host organisms. ↵↵Ligilactobacillus salivarius is known for its ability to thrive in various conditions, adapting to both aerobic and anaerobic environments. This adaptability may enable it to occupy different niches within the host, contributing to its survival and functionality in the complex microbial communities. The nonsporulating nature of strain A3iob indicates that it relies on vegetative growth for reproduction, which might be advantageous in stable environments where it is well-adapted to its ecological niche.↵↵Given its association with host environments, Ligilactobacillus salivarius strain A3iob may play a significant role in maintaining gut health and could contribute to the overall balance of the microbiome. The presence of this strain in the microbiota may influence metabolic processes, enhance nutrient absorption, or compete with pathogenic microbes, reflecting its potential benefits in host-associated ecosystems. Further studies are warranted to elucidate the specific interactions and contributions of this strain within its ecological context." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus salivarius Positive Rod No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Nonsporulating 1624 QFAS00000000.1 Bac0018559 Streptomyces xinghaiensis strain OlgR "Streptomyces xinghaiensis strain OlgR is a Gram-positive, aerobic actinobacterium known for its ability to form spores. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderate warmth, which is typical of many members within the Streptomyces genus. The spore-forming capability of S. xinghaiensis OlgR enhances its survival and dissemination in various environments, allowing it to withstand unfavorable conditions and facilitating its role in soil ecology.↵↵As a representative of the Streptomyces genus, S. xinghaiensis OlgR is likely to possess the metabolic versatility characteristic of its relatives, potentially engaging in the production of bioactive compounds. Such traits may contribute to its ecological functions, including nutrient cycling and soil health maintenance. The aerobic nature of this strain suggests it plays a role in aerobic processes within its habitat, possibly influencing organic matter decomposition and interacting with other microbial communities.↵↵Overall, the unique combination of Gram-positive cell structure, spore-forming ability, and aerobic metabolism positions Streptomyces xinghaiensis strain OlgR as an important player in its ecosystem, likely contributing to the biodiversity and functionality of soil microbiomes." Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces xinghaiensis Gram-positive non-motile aerobic 29 mesophilic spore-forming 1038928 QFBD00000000.2 Bac0018560 Kocuria rosea strain ATCC 49321 "Kocuria rosea strain ATCC 49321 is a Gram-positive coccus that typically exhibits a cell arrangement in pairs. This microbe has been isolated from diverse habitats, including indoor dust, skin, and the unique thermal environments of Iranian hot springs, specifically the Ab-e-Siah hot springs. The presence of Kocuria rosea in indoor dust suggests its potential for human exposure, while its isolation from hot springs indicates its adaptability to extreme environments. ↵↵The ability of Kocuria rosea to thrive in both domestic and extreme ecological niches may reflect its metabolic versatility and resilience. This dual habitat preference highlights the organism's potential role in biogeochemical cycles within indoor environments and geothermal ecosystems. Further research could elucidate its specific functional contributions and interactions within these varied environments, particularly in relation to microbial community dynamics." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rosea positive Coccus dust; indoor dust; Iranian Ab-e-Siah hot springs; Iranian hot spring; skin Pairs 1275 QFBL00000000.1 Bac0018561 Bacteroidetes bacterium SCGC AAA795-G10 SCGAAA795G10_151_len507 Pseudomonadati Bacteroidota Bacteroidetes bacterium SCGC AAA795-G10 2175803 QFDA00000000.1 Bac0018562 Streptomyces sp. V2 283 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. V2 1424099 QFDR00000000.1 Bac0018563 Sphingosinicella humi strain QZX222 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomicrobiaceae Allosphingosinicella Allosphingosinicella humi 2068657 QFFF00000000.1 Bac0018564 Enterobacter mori strain HPCN40 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter mori 539813 QFFO00000000.1 Bac0018565 Streptococcus thermophilus strain KU30 "Streptococcus thermophilus strain KU30 is a Gram-positive coccus characterized by its arrangement in chains or pairs and its optimal growth temperature of 45.0°C. This thermophilic bacterium thrives in diverse habitats, indicating its versatile adaptability to various environmental conditions. As an anaerobe, S. thermophilus strain KU30 does not require oxygen for growth, which aligns with its physiological traits that allow it to flourish in low-oxygen environments, such as those found in certain dairy fermentations and other anaerobic ecosystems.↵↵The strain's ability to grow optimally at elevated temperatures suggests a potential role in industrial applications, particularly in the production of fermented dairy products, where heat tolerance is a desirable trait. Moreover, its chain and pair arrangement could facilitate efficient cellular communication and metabolic cooperation within microbial communities, potentially enhancing its fermentative capabilities. The ecological implications of S. thermophilus strain KU30's adaptability and anaerobic lifestyle may contribute to its significance in biotechnological processes, as well as in the maintenance of microbial diversity in its natural habitats. Understanding the specific environmental niches occupied by this strain could provide insights into its functional roles in microbial ecosystems and its applications in food biotechnology." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus Positive Cocci No 1 1 Anaerobe 45 Thermophilic Multiple Free living Chains - Pairs 1308 QFFS00000000.1 Bac0018566 Legionella taurinensis strain WC04 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella taurinensis 70611 QFGI00000000.1 Bac0018567 Legionella taurinensis strain WC01 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella taurinensis 70611 QFGL00000000.1 Bac0018568 Acinetobacter junii strain RS03 "Acinetobacter junii strain RS03 is a Gram-negative, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. This strain exhibits the typical morphological and physiological traits associated with the Acinetobacter genus, which is known for its metabolic versatility and resilience in various ecological niches. As an aerobe, A. junii strain RS03 relies on oxygen for its growth and energy production, positioning it within environments where aerobic respiration is feasible.↵↵Acinetobacter species, including A. junii, are commonly found in soil and water, indicating a potential role in nutrient cycling and environmental bioremediation. The Gram-negative nature of this strain suggests a complex cell wall structure, which may confer advantages in surviving in diverse habitats, including those with competing microbial populations. Understanding the specific metabolic pathways and ecological roles of A. junii strain RS03 could provide insights into its contributions to ecosystem dynamics, particularly in relation to organic matter degradation and nutrient recycling processes.↵↵The aerobic nature of A. junii strain RS03 may also imply its involvement in processes such as nitrogen cycling, as aerobic bacteria are often critical players in the transformation of nitrogenous compounds in the environment. This highlights the importance of studying such strains to elucidate their functional roles in microbial communities and their potential applications in environmental biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 QFGM00000000.1 Bac0018569 Legionella pneumophila strain RS02 "Legionella pneumophila strain RS02 is a Gram-negative, rod-shaped bacterium that exists primarily in a host-associated habitat. This strain exhibits a single-cell arrangement and is characterized as nonsporulating, indicating that it does not form spores for survival under adverse conditions. As a chemoorganotroph, Legionella pneumophila strain RS02 derives its energy from organic compounds, which highlights its adaptability in nutrient-rich environments typically associated with host organisms. ↵↵This strain is strictly aerobic, requiring oxygen for its metabolic processes, which aligns with its ecological niche where it may thrive in the presence of organic material and oxygen-rich environments. The specific association with hosts suggests that Legionella pneumophila strain RS02 may play a role in complex microbial communities, potentially influencing host-microbe interactions and the overall microbiome dynamics.↵↵Understanding the characteristics of this strain not only sheds light on its potential ecological roles but also emphasizes the importance of studying host-associated microorganisms in various environments, particularly in relation to their interactions with other microbial species and the hosts themselves. The unique combination of traits observed in Legionella pneumophila strain RS02 may contribute to its ecological success in specific niches where organic matter and oxygen are readily available." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFGN00000000.1 Bac0018570 Legionella pneumophila strain RH06 "Legionella pneumophila strain RH06 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized as a nonsporulating organism. This strain is a chemoorganotroph, meaning it derives its energy from organic compounds, and it requires aerobic conditions for growth.↵↵Legionella pneumophila, as a species, is predominantly associated with host environments, often found in water systems that can support its proliferation. This association indicates that strain RH06 may thrive in specific ecological niches where organic matter is present, potentially within biofilms or in association with protozoan hosts. While the specific pathogenic potential of strain RH06 is not detailed here, its habitat preference suggests it is adapted to environments that may also support other microorganisms, influencing microbial community dynamics.↵↵The aerobic nature of strain RH06 reflects its metabolic requirements and may play a role in its ecological interactions, as it competes for oxygen and organic substrates with other microbial species in host-associated habitats. This highlights the importance of understanding the ecological roles of Legionella strains within their environments, as they may contribute to broader microbial processes and interactions in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFGR00000000.1 Bac0018571 Legionella pneumophila strain RH02 "Legionella pneumophila strain RH02 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized as a nonsporulating organism. This strain is classified as a chemoorganotroph, indicating that it derives its energy through the oxidation of organic compounds, which aligns with its aerobic nature, requiring oxygen for growth and metabolism. ↵↵The habitat of Legionella pneumophila strain RH02 is closely associated with host environments, suggesting a relationship with specific hosts, potentially including protozoa, which are known to provide a niche for the bacterium. This relationship may facilitate the survival and proliferation of the strain in environments that are rich in organic material, enhancing its ability to thrive in various ecological settings.↵↵A unique aspect of Legionella pneumophila strain RH02 lies in its potential interactions within host-associated environments, where it may engage in complex microbial dynamics. Understanding these interactions could illuminate the broader ecological roles that this strain may play in microbial communities, particularly in relation to nutrient cycling and microbial competition in aquatic systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFGV00000000.1 Bac0018572 Legionella pneumophila strain RH01 "Legionella pneumophila strain RH01 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, deriving its energy from organic compounds, and exhibits an aerobic metabolism, requiring oxygen for growth. It is primarily associated with host environments, indicating a potential reliance on specific hosts for survival and propagation.↵↵The ecological niche of Legionella pneumophila strain RH01 may reflect its adaptation to environments rich in organic materials, such as water systems where it can thrive in biofilms and interact with protozoan hosts. This relationship not only supports its growth but could also influence its survival strategies, enabling it to evade antimicrobial treatments and environmental stresses. Understanding the traits of this strain contributes to broader insights into the biology and ecology of Legionella species, particularly their interactions with host organisms and their roles in aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFGW00000000.1 Bac0018573 Legionella pneumophila strain RD04 "Legionella pneumophila strain RD04 is a Gram-negative, rod-shaped bacterium that exists as single cells and is characterized as a nonsporulating organism. This strain is metabolically classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. Its aerobic nature suggests that it requires oxygen for growth and metabolic processes. ↵↵L. pneumophila, as a species, is known to inhabit environments that are closely associated with hosts, which may include various aquatic systems and human-made environments. The ability of strain RD04 to thrive in host-associated habitats underscores its potential for establishing symbiotic or pathogenic relationships with various organisms, although specific pathogenic traits for this strain are not detailed here.↵↵Given its ecological niche and metabolic requirements, L. pneumophila strain RD04 may play a significant role in nutrient cycling within its associated environments, potentially influencing microbial community dynamics in host-associated habitats. Understanding the specific interactions of this strain within its ecological context could provide insights into its functional role in environmental microbiology and its implications for public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFGY00000000.1 Bac0018574 Legionella pneumophila strain RD02 "Legionella pneumophila strain RD02 is a Gram-negative, rod-shaped bacterium that exhibits a single-cell arrangement and is non-sporulating. This organism is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, and it requires aerobic conditions for growth, relying on oxygen to fulfill its metabolic needs. ↵↵L. pneumophila strain RD02 is typically found in host-associated habitats, which suggests its ecological niche is closely linked to environments where it can interact with various host organisms. Its aerobic characteristics point to a potential adaptation to environments with sufficient oxygen, such as biofilms or water systems that are exposed to air. ↵↵This strain’s non-sporulating nature may reflect its evolutionary strategies for survival and proliferation in specific environments, as it does not rely on sporulation for persistence under adverse conditions. The organism's ecological role may involve complex interactions with host organisms, possibly influencing microbial community dynamics in aquatic environments or within specific ecological niches associated with its hosts. Further studies may elucidate the precise ecological interactions and the implications of its metabolic capabilities within these environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHA00000000.1 Bac0018575 Stenotrophomonas maltophilia strain RC09 "Stenotrophomonas maltophilia strain RC09 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism. This strain exhibits a versatile habitat preference, thriving in multiple environments, which highlights its adaptability and resilience. ↵↵As an aerobe, S. maltophilia strain RC09 requires oxygen for growth, positioning it among microorganisms that play significant roles in various ecological niches where oxygen is available. The ability of this strain to inhabit diverse habitats suggests potential interactions with other microbial communities and indicates its ability to contribute to biogeochemical cycles in those environments. ↵↵The ecological versatility of Stenotrophomonas maltophilia strain RC09 may facilitate its survival in fluctuating environmental conditions, underscoring the importance of studying such microorganisms in the context of environmental microbiology and their roles in ecosystem dynamics. This adaptability may also reflect a broader ecological significance, particularly in environments impacted by human activity, where its presence could influence microbial community structure and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 QFHC00000000.1 Bac0018576 Legionella pneumophila strain RC07 "Legionella pneumophila strain RC07 is a nonsporulating, aerobic, Gram-negative rod that typically exists as single cells. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, which aligns with its habitat that is primarily host-associated. The capacity to thrive within host environments may facilitate its survival and potential interactions with eukaryotic cells, although the specifics of these interactions remain to be elucidated. ↵↵This strain, like other members of the Legionella genus, is notably adapted to aquatic environments, often associated with man-made water systems. Its aerobic nature indicates a reliance on oxygen for metabolic processes, which may influence its distribution and prevalence in specific ecological niches. Understanding the metabolic capabilities of Legionella pneumophila strain RC07 can provide insights into its ecological role and adaptability within host-associated habitats, highlighting the complex interplay between microbial life and its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHE00000000.1 Bac0018577 Legionella pneumophila strain RC05 "Legionella pneumophila strain RC05 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, indicating that it derives its energy from organic compounds, and it requires oxygen for its metabolic processes, categorizing it as aerobic.↵↵Typically associated with host environments, Legionella pneumophila strain RC05 is known to inhabit various aquatic systems, often linked to water sources such as cooling towers, hot tubs, and plumbing systems. Its adaptation to host-associated habitats suggests a potential for complex interactions with both environmental and host factors, which may influence its survival and proliferation.↵↵The nonsporulating nature of this strain implies a reliance on stable, conducive environments for growth, as it does not possess the ability to enter a dormant state under unfavorable conditions. Understanding the ecological roles of Legionella pneumophila strains, including RC05, may provide insights into their adaptability and persistence in engineered water systems, as well as their potential interactions with other microbial communities present in these environments. This highlights the importance of monitoring such bacteria in water management practices to ensure public health safety." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHG00000000.1 Bac0018578 Legionella pneumophila strain RC04 "Legionella pneumophila strain RC04 is a Gram-negative, rod-shaped bacterium that exists primarily in a host-associated habitat and is classified as a chemoorganotroph, utilizing organic compounds for energy. This strain does not form spores and typically appears as single cells rather than in clusters. As an aerobic organism, Legionella pneumophila strain RC04 requires oxygen for its metabolic processes, which is consistent with its environmental niches where oxygen levels are sufficient.↵↵The nonsporulating nature of this strain suggests that it may have evolved specific adaptations for survival within host environments, potentially including mechanisms for evading host immune responses. Understanding the ecological role of Legionella pneumophila strain RC04 in host-associated habitats can provide insights into its interactions with both microbial communities and host organisms. Notably, the tendency of Legionella species to thrive in specific aquatic environments, coupled with their association with protozoa, may indicate a complex ecological relationship that merits further investigation. This strain exemplifies the intricate dynamics of microorganisms in host-associated ecosystems, highlighting the necessity for ongoing research into their behavior and interactions within these environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHH00000000.1 Bac0018579 Legionella pneumophila strain RC03 "Legionella pneumophila strain RC03 is a Gram-negative, rod-shaped bacterium that exists as individual cells and is characterized as a nonsporulating organism. This strain exhibits an aerobic metabolism, relying on chemoorganotrophy for its energy needs, which indicates its ability to utilize organic compounds in the presence of oxygen. ↵↵Legionella pneumophila is primarily host-associated, suggesting a close relationship with specific environments that may include aquatic systems or human-associated settings, where it can thrive in biofilms or within host cells. The aerobic nature of this bacterium implies a preference for oxygen-rich environments, which is consistent with its habitat preferences. ↵↵This organism is notable for its potential role in environmental and clinical contexts, particularly in relation to its association with water systems where it can proliferate. The nonsporulating characteristic of strain RC03 may indicate a reliance on specific conditions for survival and reproduction, as it does not produce spores to endure unfavorable environments. ↵↵Understanding the traits of Legionella pneumophila strain RC03 can provide insights into its ecological roles, particularly in host-associated habitats where it may interact with other microorganisms and contribute to the dynamics of microbial communities. Furthermore, its aerobic, chemoorganotrophic metabolism positions it within a niche that may influence nutrient cycling in its environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHI00000000.1 Bac0018580 Legionella pneumophila strain RC01 "Legionella pneumophila strain RC01 is a Gram-negative, non-sporulating rod-shaped bacterium that exhibits a single-cell arrangement. This strain is classified as a chemoorganotroph, indicating it utilizes organic compounds as its primary energy source. Legionella pneumophila is known to be an aerobic organism, requiring oxygen for its metabolic processes, which aligns with its habitat preferences that are typically associated with host environments.↵↵The ecological niche of strain RC01 is noteworthy, as it thrives in environments closely linked to human activities, particularly in water systems such as cooling towers, hot water systems, and natural aquatic environments. Its host-associated habitat may facilitate interactions with various hosts, including protozoa, which can provide a refuge and nutrient source for the bacterium. This relationship is significant in understanding its survival and proliferation in both natural and man-made environments.↵↵Overall, the characteristics of Legionella pneumophila strain RC01 underscore its adaptability to aerobic conditions and association with organic matter in host environments, which may play a role in its ecological dynamics and potential interactions within microbial communities. This adaptability may contribute to its persistence in various environmental settings, further emphasizing the importance of monitoring and understanding its ecological impact." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHK00000000.1 Bac0018581 Legionella pneumophila strain HH50 "Legionella pneumophila strain HH50 is a Gram-negative, rod-shaped bacterium that typically exists as individual cells and is characterized as a nonsporulating organism. This strain, like other members of its species, is a chemoorganotroph, deriving energy from organic compounds. It requires oxygen for its metabolic processes, classifying it as an aerobic organism.↵↵Primarily associated with host environments, Legionella pneumophila strain HH50 is known to inhabit aquatic systems and can be found in association with protozoan hosts. This association not only provides a niche for the bacterium but also plays a critical role in its lifecycle and survival. The presence of Legionella spp. in natural and man-made water systems highlights the importance of understanding their ecological dynamics, particularly in relation to biofilm formation and interactions with other microorganisms. These factors contribute to their persistence in the environment and potential implications for public health. The particular ecological role of strain HH50 within its habitat remains an area for further investigation, particularly in terms of its interactions with host organisms and the broader microbial community." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHV00000000.1 Bac0018582 Legionella pneumophila strain HH48 "Legionella pneumophila strain HH48 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is nonsporulating and functions as a chemoorganotroph, utilizing organic compounds as its primary energy source. Being aerobic, L. pneumophila strain HH48 requires oxygen for its metabolic processes, which aligns with its habitat preference for being host-associated. ↵↵The host-associated lifestyle of this strain suggests a potential adaptation to specific ecological niches, where it may exploit organic nutrients available in host environments. This characteristic also raises interesting questions about its interactions with host immune systems and microbial communities, as well as its potential roles in the maintenance of microbial diversity in such habitats. The understanding of its ecological role could provide insight into its behavior in natural and anthropogenic environments, particularly in relation to water systems where it is often detected." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFHX00000000.1 Bac0018583 Legionella pneumophila strain HH42 "Legionella pneumophila strain HH42 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and exhibits aerobic respiration, utilizing organic compounds as a chemoorganotroph for energy. This nonsporulating microbe is known to inhabit host-associated environments, suggesting a close association with living organisms, which may serve as reservoirs or ecological niches.↵↵The aerobic nature of Legionella pneumophila strain HH42 indicates that it requires oxygen for its metabolic processes, facilitating its survival in environments rich in organic material, such as biofilms and water systems associated with human habitation. The strain's nonsporulating characteristic implies a reliance on specific environmental conditions for survival and proliferation, rather than the ability to endure extreme stressors through sporulation.↵↵Given its habitat and metabolic characteristics, Legionella pneumophila strain HH42 may play a critical role in nutrient cycling within aquatic ecosystems, particularly in man-made water systems where it can thrive. This adaptation highlights the importance of understanding microbial dynamics in engineered environments, as it may have implications for water quality management and the control of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFID00000000.1 Bac0018584 Legionella pneumophila strain HH37 "Legionella pneumophila strain HH37 is a gram-negative, rod-shaped bacterium that exists predominantly in a host-associated habitat and is classified as a chemoorganotroph, utilizing organic compounds as its energy source. This strain does not form spores and is typically found as single cells rather than in clusters or chains. ↵↵As an aerobic organism, L. pneumophila strain HH37 requires oxygen for its metabolic processes, which aligns with its ecological niche, often associated with water systems where oxygen is present. The bacterium's ability to thrive in such environments underscores its potential for survival in various host-associated habitats, including those found in human-made water systems. ↵↵Understanding the ecological role of L. pneumophila strain HH37 is crucial, as its presence in water systems can have implications for both environmental microbiology and public health. The strain's nonsporulating nature may influence its persistence in these environments, suggesting that it may rely on specific conditions for survival and growth, potentially leading to localized outbreaks under favorable circumstances." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFII00000000.1 Bac0018585 Legionella pneumophila strain HH36 "Legionella pneumophila strain HH36 is a Gram-negative, rod-shaped bacterium that exists as single cells and is nonsporulating. As a chemoorganotroph, it derives energy through the oxidation of organic compounds, which underscores its role in nutrient cycling within its ecological niche. This strain is strictly aerobic, indicating that it requires molecular oxygen for growth and metabolism.↵↵The habitat of Legionella pneumophila strain HH36 is predominantly host-associated, suggesting that it may be found in environments closely linked to host organisms, potentially within biofilms or within aquatic systems where it can interact with protozoa. This association with hosts may facilitate its survival and proliferation in specific ecological contexts, particularly in water systems such as cooling towers or plumbing systems in buildings, where it can thrive in warm, nutrient-rich environments.↵↵Understanding the ecological role of Legionella pneumophila strain HH36 is essential for comprehending its interactions within microbial communities and its potential impact on public health. Its aerobic nature and preference for organic substrates can help inform strategies for controlling its presence in engineered water systems, thereby mitigating risks associated with its transmission." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFIJ00000000.1 Bac0018586 Legionella pneumophila strain HH31 "Legionella pneumophila strain HH31 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and does not form spores. As an aerobic organism, it requires oxygen for growth and is characterized as a chemoorganotroph, utilizing organic compounds as its energy source. This strain is primarily associated with host environments, indicating its adaptation to living in proximity to other organisms, potentially within biofilms or as a pathogen within host tissues.↵↵Legionella pneumophila is known for its association with water systems, often proliferating in warm water environments such as cooling towers and hot water tanks. The habitat preferences of strain HH31 suggest a potential ecological role in microbial communities where organic material is present, potentially influencing nutrient cycling and interactions with other microbial species. ↵↵Understanding the specific traits of Legionella pneumophila strain HH31 contributes to a broader comprehension of its ecological niche and metabolic capabilities, which may have implications for its management in water systems to prevent outbreaks of Legionnaires' disease. This strain exemplifies the intricate balance between microbial life and its environment, underscoring the importance of studying host-associated microbes in understanding their roles in health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFIO00000000.1 Bac0018587 Legionella pneumophila strain HH28 "Legionella pneumophila strain HH28 is a Gram-negative, rod-shaped bacterium that exists primarily in a host-associated habitat and is classified as a chemoorganotroph, utilizing organic compounds for energy. This strain is characterized by its single-cell arrangement and is nonsporulating, indicating that it does not form spores as part of its life cycle. ↵↵As an aerobic organism, Legionella pneumophila strain HH28 requires oxygen for its growth and metabolic processes, which further emphasizes its adaptation to environments where oxygen is readily available. The host-associated habitat suggests a close relationship with specific hosts, potentially influencing its ecological niche and interactions within microbial communities. ↵↵Understanding the traits of Legionella pneumophila strain HH28 is crucial for exploring its ecological roles and potential interactions with other microorganisms in host-associated environments, particularly in aquatic systems where it may reside within protozoan hosts. This strain's metabolic capabilities highlight its adaptability and significance within specific ecological contexts, reinforcing the importance of studying such microbes to better understand their roles in health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFIR00000000.1 Bac0018588 Legionella pneumophila strain HH26 "Legionella pneumophila strain HH26 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells. This strain is classified as a chemoorganotroph, deriving its energy from organic compounds, and exhibits an aerobic metabolism, necessitating oxygen for growth. Unlike some other bacterial species, L. pneumophila HH26 does not undergo sporulation, which may influence its survival strategies in various environments.↵↵The habitat of L. pneumophila strain HH26 is notably host-associated, suggesting a specific relationship with its host organisms, which could include various protozoa or human-associated environments. This host association is characteristic of many Legionella species, often found in water systems, where they can replicate within amoebae, providing a niche for their survival and dissemination.↵↵Understanding the traits of L. pneumophila strain HH26 can offer insights into its ecological roles, particularly in aquatic ecosystems where it may contribute to microbial community dynamics and interactions with other microorganisms. Its aerobic nature and chemoorganotrophic lifestyle also highlight its potential adaptability to oxygen-rich environments, which may play a role in its proliferation within host-associated systems. Further studies on this strain could elucidate its interactions with host cells and the environmental factors that influence its distribution and abundance." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFIT00000000.1 Bac0018589 Legionella pneumophila strain HH20 "Legionella pneumophila strain HH20 is a Gram-negative, rod-shaped bacterium that exists predominantly in a singles arrangement. This strain is classified as a nonsporulating organism and is known to be a chemoorganotroph, deriving its energy from organic compounds. L. pneumophila HH20 is aerobic, requiring oxygen for its metabolic processes, and is typically found in host-associated habitats.↵↵This microbe is part of a larger group of Legionella species that are often associated with water systems, particularly in man-made environments, where it can proliferate under certain conditions. The ecology of Legionella species, including strain HH20, is intricately linked to its ability to thrive in biofilms and within amoebae, which serve as natural reservoirs and protect the bacteria from environmental stresses.↵↵Given its unique traits, L. pneumophila strain HH20 may play a significant role in understanding microbial interactions within host-associated environments, particularly in relation to biofilm dynamics and the maintenance of microbial communities in engineered systems. Further research into this strain's physiological responses and ecological interactions could provide insights into its behavior in complex environments and its potential implications for human health." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFIZ00000000.1 Bac0018590 Legionella pneumophila strain HH18 "Legionella pneumophila strain HH18 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a chemoorganotroph. This strain is nonsporulating and demonstrates an aerobic metabolism, requiring oxygen for its growth and energy production. Legionella pneumophila, in general, has a well-documented association with host environments, suggesting that strain HH18 thrives in conditions that provide access to organic matter and oxygen-rich environments, often linked to water systems.↵↵The aerobic nature of L. pneumophila strain HH18 indicates that it plays a role in the biogeochemical cycling of carbon and nitrogen in its host-associated habitats. Given its lifestyle, this strain may contribute to the microbial community dynamics in aquatic systems, particularly in warm water environments such as hot tubs, cooling towers, or plumbing systems where organic matter is present. Understanding the ecological role of Legionella pneumophila strain HH18 can provide insights into its interactions within these communities and inform strategies for managing its presence in human-associated water systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJB00000000.1 Bac0018591 Legionella pneumophila strain HH15 "Legionella pneumophila strain HH15 is a Gram-negative, rod-shaped bacterium that typically exists in a host-associated habitat. This strain is characterized by its occurrence as single cells rather than in clusters or chains, which is a notable feature of its cell arrangement. As a nonsporulating organism, Legionella pneumophila strain HH15 does not form spores, which is relevant to its survival and dissemination in the environment.↵↵As a chemoorganotroph, this strain utilizes organic compounds as its energy source, indicating its reliance on complex organic matter for growth and metabolism. Furthermore, it is strictly aerobic, requiring oxygen for its metabolic processes, which suggests a preference for oxygen-rich environments, typically found in biofilms or within host organisms.↵↵Understanding the ecological niche of Legionella pneumophila strain HH15 is crucial for comprehending its potential interactions within its host-associated environments. Its aerobic nature, combined with its characteristic of being a chemoorganotroph, implies a role in nutrient cycling within aquatic ecosystems where it may inhabit water distribution systems or amoebae. This highlights the importance of monitoring such strains in public health contexts, as their specific ecological requirements may influence their survival and proliferation in engineered environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJE00000000.1 Bac0018592 Legionella pneumophila strain HH13 "Legionella pneumophila strain HH13 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, indicating its reliance on organic compounds for energy production. It thrives in aerobic conditions, necessitating oxygen for its metabolic processes.↵↵Typically associated with host environments, Legionella pneumophila is known to inhabit various ecological niches, often linked to water systems where it can establish itself within protozoan hosts. The strain HH13's aerobic nature suggests a potential adaptation to environments rich in oxygen, which may be significant for its survival and proliferation, particularly in man-made water systems prone to contamination.↵↵This strain's characteristics highlight its ecological role in complex microbial communities, where it may engage in intricate interactions with both its host and other microbial inhabitants. Understanding these traits is crucial for comprehending the ecological dynamics in which Legionella pneumophila strain HH13 participates, offering insights into its potential roles within host-associated environments and its responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJG00000000.1 Bac0018593 Legionella pneumophila strain HH09 "Legionella pneumophila strain HH09 is a Gram-negative, rod-shaped bacterium that exists as single cells and is characterized as a nonsporulating organism. This strain is a chemoorganotroph, meaning it derives its energy from organic compounds, and it requires oxygen for its metabolic processes, classifying it as aerobic. ↵↵L. pneumophila is notably associated with host environments, which suggests its ecological niche may be closely tied to organisms that can provide suitable conditions for growth and replication. Although the specific interactions and pathogenic potential of strain HH09 are not detailed in the provided traits, its association with host environments hints at a possible symbiotic or pathogenic relationship with eukaryotic cells, typical of Legionella species.↵↵Understanding the specific ecological roles and interactions of L. pneumophila strain HH09 within host-associated habitats could provide insights into its behavior and survival strategies, as well as its potential impacts on human health and the environment. This highlights the importance of studying such strains in the context of their ecological niches to better grasp their biological significance and contribution to microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJK00000000.1 Bac0018594 Legionella pneumophila strain HH07 "Legionella pneumophila strain HH07 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, deriving its energy from organic compounds, and requires aerobic conditions for growth. Legionella pneumophila is commonly associated with host environments, indicating a potential dependence on specific ecological niches for survival and proliferation.↵↵The unique characteristics of strain HH07 suggest its adaptability to environments where organic matter is present, potentially within aquatic systems or human-made water systems. This highlights the bacterium's ecological significance in biofilm formation and its interactions with various microbial communities. Understanding the ecological role of Legionella pneumophila strain HH07 could provide insights into its behavior in host-associated habitats, which is critical for developing strategies for monitoring and managing potential outbreaks associated with this organism." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJM00000000.1 Bac0018595 Legionella pneumophila strain HH06 "Legionella pneumophila strain HH06 is a rod-shaped, Gram-negative bacterium that exhibits a single-cell arrangement and is classified as a nonsporulating organism. This strain is a chemoorganotroph, deriving its energy from organic compounds, and is strictly aerobic, requiring oxygen for growth and metabolism. ↵↵Typically associated with host environments, Legionella pneumophila strain HH06 is often found in aquatic systems, particularly those that can harbor biofilms or are subject to warm temperatures. The bacterium's adaptation to a host-associated habitat suggests that it may thrive in environments that provide organic nutrients and oxygen, potentially influencing its ecological interactions and survival strategies.↵↵Understanding the traits of strain HH06 can contribute to broader insights into the behavior and ecology of Legionella species, particularly regarding their adaptations to host-associated environments. This may inform future studies on the bacterium's interactions within microbial communities and its potential responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJN00000000.1 Bac0018596 Legionella pneumophila strain HC13 "Legionella pneumophila strain HC13 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a chemoorganotroph, utilizing organic compounds as its energy source. This strain is nonsporulating and requires aerobic conditions for growth, indicating its dependence on oxygen for metabolic processes. ↵↵L. pneumophila strains are often found in host-associated habitats, suggesting a strong association with living organisms. This characteristic highlights the bacterium's role in specific ecological niches, particularly in environments where it can thrive within host systems, such as amoebae or human tissues. ↵↵Understanding the ecological interactions of L. pneumophila strain HC13 is crucial, as it may provide insights into its survival strategies and potential impact within its natural and artificial environments. The bacterium's nonsporulating nature further emphasizes its reliance on host-associated habitats, which may influence its transmission dynamics and ecological relationships within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJU00000000.1 Bac0018597 Legionella pneumophila strain HC12 "Legionella pneumophila strain HC12 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, deriving its energy from organic compounds, and exhibits an aerobic metabolism, indicating that it requires oxygen for growth. The habitat of L. pneumophila strain HC12 is primarily host-associated, suggesting a close relationship with living organisms, which may facilitate its survival and reproduction in specific environments.↵↵The characteristics of this strain point to its adaptability within host-associated habitats, where it may engage in complex interactions with host cells. The aerobic nature of L. pneumophila strain HC12 allows it to thrive in oxygen-rich environments, which are often found in the water systems of human-made structures, such as cooling towers and plumbing systems. This adaptation could provide insights into its ecological niche and the potential for persistence in environments conducive to its growth. Understanding these traits is crucial for comprehending the broader ecological role of L. pneumophila, particularly in relation to its survival strategies and interactions within host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFJV00000000.1 Bac0018598 Legionella pneumophila strain HC07 "Legionella pneumophila strain HC07 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and does not form spores. This strain is a chemoorganotroph, utilizing organic compounds as its energy source, and is obligately aerobic, requiring oxygen for growth and metabolism. Legionella pneumophila is known to inhabit host-associated environments, which suggests a close association with eukaryotic cells, often found in water systems and within amoebae.↵↵The nonsporulating nature of this strain indicates that it relies on other mechanisms for survival in adverse conditions, possibly favoring its persistence in complex aquatic environments. Given its specific habitat and metabolic requirements, L. pneumophila strain HC07 may play a significant role in the microbial ecology of water systems, where it can interact with other microbial communities and influence nutrient cycling.↵↵Understanding the traits of Legionella pneumophila strain HC07 highlights its adaptive strategies and ecological niches, emphasizing the importance of studying its interactions within host-associated environments to gain insights into its potential roles in environmental microbiology and public health contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKA00000000.1 Bac0018599 Legionella pneumophila strain HC05 "Legionella pneumophila strain HC05 is a Gram-negative, rod-shaped bacterium characterized by its solitary cell arrangement and aerobic metabolism. As a nonsporulating organism, it relies on organic compounds as a chemoorganotroph for energy, indicating its dependence on the presence of specific substrates in its environment. This strain is primarily host-associated, suggesting an ecological niche that is closely tied to living organisms, potentially residing within amoebae or other protozoan hosts, which are known to provide a protective environment conducive to its survival and replication.↵↵The aerobic nature of L. pneumophila strain HC05 further emphasizes its requirement for oxygen, which is a critical factor in its metabolic processes. This trait is often associated with environments rich in organic material, where oxygen is available for cellular respiration. Understanding the specific ecological relationships and energy requirements of strain HC05 can provide insights into its environmental persistence and potential interactions with other microorganisms. ↵↵The ability of L. pneumophila to inhabit host organisms not only enhances its survival but also suggests a complex ecological dynamic that may influence microbial community structure in aquatic systems. This highlights the importance of studying such strains within their natural habitats to better understand their roles in microbial ecology and their potential implications for public health." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKC00000000.1 Bac0018600 Legionella pneumophila strain HC01 "Legionella pneumophila strain HC01 is a Gram-negative, rod-shaped bacterium that exists as single cells and is characterized by its aerobic metabolism and chemoorganotrophic energy source. This strain does not undergo sporulation, indicating a reliance on a stable environment for survival and growth. Being host-associated, Legionella pneumophila strain HC01 typically inhabits environments closely linked to host organisms, which may play a critical role in its life cycle and ecological interactions.↵↵The aerobic nature of this strain suggests that it thrives in environments where oxygen is readily available, potentially influencing its distribution in both natural and anthropogenic water systems. Given its association with hosts, it may exhibit specific adaptations that enhance its survival in microenvironments created by host organisms, such as biofilms or within amoebae. These interactions could provide insights into its ecological niche and potential roles within microbial communities. Understanding these dynamics is essential for elucidating the broader ecological impacts of Legionella pneumophila and its relationship with hosts in various environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKG00000000.1 Bac0018601 Legionella pneumophila strain C4 "Legionella pneumophila strain C4 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a nonsporulating organism. This strain is a chemoorganotroph, utilizing organic compounds as its energy source, and exhibits an aerobic metabolism, requiring oxygen for growth and survival. ↵↵L. pneumophila is known to be host-associated, reflecting its adaptation to living within aquatic environments and, notably, within protozoan hosts. The bacterium's ability to thrive in such host-associated habitats may facilitate its survival and proliferation in various ecological niches, particularly in water systems that are conducive to its growth, such as cooling towers and plumbing systems. ↵↵Understanding the traits of L. pneumophila strain C4 provides insight into its ecological role and potential interactions within microbial communities, especially in contexts where it may be involved in complex food webs or biogeochemical cycles. The organism's aerobic nature and reliance on organic substrates further suggest its potential involvement in nutrient cycling in aquatic ecosystems, highlighting the intricate relationships between this microbe and its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKN00000000.1 Bac0018602 Legionella pneumophila strain C3_2 "Legionella pneumophila strain C3_2 is a Gram-negative, rod-shaped bacterium that exists primarily in a host-associated habitat and exhibits a single-cell arrangement. As a nonsporulating organism, this strain relies on organic compounds as a chemoorganotrophic energy source and requires oxygen for its metabolic processes, classifying it as aerobic. ↵↵The host-associated nature of Legionella pneumophila strain C3_2 suggests that it may have specific interactions or dependencies on host organisms, which could influence its survival and proliferation in various environments. Understanding the ecological niches occupied by this strain could provide insights into its role in microbial communities and its potential interactions with other microorganisms in host-associated environments. Additionally, the strain's aerobic metabolism may affect its distribution in environments where oxygen levels fluctuate, highlighting its adaptation strategies in response to varying ecological conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKO00000000.1 Bac0018603 Legionella pneumophila strain C3_1 "Legionella pneumophila strain C3_1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is nonsporulating and functions as a chemoorganotroph, deriving its energy from organic compounds. Importantly, Legionella pneumophila strain C3_1 is classified as aerobic, requiring oxygen for its metabolic processes. ↵↵Its habitat is primarily host-associated, indicating a close relationship with eukaryotic hosts, which may include various aquatic environments where this bacterium can proliferate, often within biofilms or within protozoan hosts. The preference for a host-associated habitat suggests a complex interplay with its environment, potentially influencing its survival strategies and interactions with other microbial communities.↵↵Understanding the traits of Legionella pneumophila strain C3_1 can provide insights into its ecological role within aquatic systems, particularly regarding its potential interactions with amoebas and other microorganisms that can serve as reservoirs. This relationship underscores the importance of studying such bacteria in the context of water quality and public health, as their survival and proliferation in host-associated environments may have implications for their transmission and persistence in human-associated water systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKP00000000.1 Bac0018604 Legionella pneumophila strain C2_2 "Legionella pneumophila strain C2_2 is a Gram-negative, rod-shaped bacterium that exists primarily in a host-associated habitat and demonstrates an aerobic metabolism as a chemoorganotroph. This strain exhibits a single-cell arrangement and is characterized by its nonsporulating nature, indicating that it does not form spores under environmental stress. The aerobic requirement suggests that L. pneumophila strain C2_2 relies on oxygen for its metabolic processes, which is consistent with its ecological niche often found in freshwater environments and associated with various hosts. ↵↵Legionella species, including strain C2_2, are known for their complex life cycles and interactions with amoebae, which may serve as reservoirs and protect the bacteria from environmental challenges. Understanding the specific traits of strain C2_2 could provide insights into its adaptability and survival strategies within host-associated environments, further contributing to the broader knowledge of Legionella biology and its ecological roles." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKQ00000000.1 Bac0018605 Legionella pneumophila strain C1 "Legionella pneumophila strain C1 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as a nonsporulating organism. As a chemoorganotroph, this strain derives its energy from organic compounds, which aligns with its aerobic nature, requiring oxygen for metabolic processes. The habitat of L. pneumophila strain C1 is predominantly host-associated, indicating a close relationship with host organisms, which may play a crucial role in its life cycle and environmental persistence.↵↵This specific strain exemplifies the adaptive strategies of Legionella species, which are known to thrive in various aquatic environments and are often associated with biofilms. The ability of L. pneumophila to utilize organic matter from its host environment may facilitate its survival and replication within host-associated niches. Understanding the metabolic pathways and ecological interactions of L. pneumophila strain C1 can provide insights into its role in microbial communities and its potential responses to environmental changes. This knowledge is essential for developing effective strategies for monitoring and controlling Legionella populations in both natural and engineered water systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella pneumophila Negative Rod Yes 1 2 Aerobic Chemoorganotroph Mesophilic HostAssociated Free living Singles Nonsporulating 446 QFKT00000000.1 Bac0018606 Marinifilum breve strain JC075 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Marinifilum Marinifilum breve 2184082 QFLI00000000.1 Bac0018607 Paracoccus denitrificans "Paracoccus denitrificans is a Gram-negative bacterium renowned for its versatile metabolic capabilities, particularly in the context of nitrogen cycling. This microbe is primarily characterized by its ability to perform denitrification, a process in which nitrate is reduced to nitrogen gas, thus playing a significant role in soil and aquatic ecosystems by contributing to the nitrogen cycle.↵↵P. denitrificans is typically found in various environments, including soil and water, where it participates actively in nutrient cycling. Its metabolic versatility allows it to thrive under both aerobic and anaerobic conditions, making it an important organism for studies related to environmental microbiology and biogeochemical cycles.↵↵The bacterium's cellular structure, typical of Gram-negative organisms, is defined by a thin peptidoglycan layer sandwiched between an inner and an outer membrane. This unique cell wall composition is crucial for its interaction with the environment and its ability to withstand various environmental stresses.↵↵Moreover, P. denitrificans serves as a model organism for understanding the biochemical pathways involved in denitrification and the broader implications of these processes on ecosystem functioning and nitrogen availability. Its metabolic flexibility not only enhances our understanding of microbial ecology but also presents potential applications in bioremediation and agricultural practices aimed at managing nitrogen levels in various habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus denitrificans negative 266 QFMZ00000000.1 Bac0018608 Sphingomonas hengshuiensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas hengshuiensis 1609977 QFNF00000000.1 Bac0018609 Roseateles depolymerans Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles depolymerans 76731 QFOD00000000.1 Bac0018610 Aliarcobacter butzleri "Aliarcobacter butzleri is a Gram-negative bacterium that belongs to the family Arcobacteraceae. This microbe is characterized by its spiral or curved rod shape and is typically found in various environmental and host-associated settings. A. butzleri is notable for its ability to survive in a range of temperatures and pH levels, which may contribute to its widespread presence in different ecological niches.↵↵The bacterium has been identified in association with various food sources, particularly in water and meat products, indicating its potential role in food safety and public health discussions. Its Gram-negative nature suggests the presence of an outer membrane containing lipopolysaccharides, which may play a role in its environmental resilience and interactions with other microorganisms.↵↵Research indicates that A. butzleri can exhibit metabolic versatility, allowing it to thrive in diverse environments. This flexibility may enable the bacterium to occupy ecological niches that are less favorable for other microbial species, contributing to its persistence in both natural and anthropogenic environments. In light of its adaptability and presence in food products, A. butzleri may serve as an important indicator of microbial quality in food safety assessments and warrants further investigation into its ecological interactions and potential impacts on microbe-mediated processes in various ecosystems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri negative 28197 QFOE00000000.1 Bac0018611 Azospira oryzae Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Azospira Azospira oryzae microaerophile 146939 QFOK00000000.1 Bac0018612 Micavibrio aeruginosavorus Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus 349221 QFOT00000000.1 Bac0018613 Lawsonella clevelandensis Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis 1528099 QFOZ00000000.1 Bac0018614 Rhodanobacter denitrificans Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Rhodanobacter Rhodanobacter denitrificans 666685 QFPO00000000.1 Bac0018615 Ancylobacter novellus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Ancylobacter Ancylobacter novellus No 1 2 Heterotroph - Chemolithotroph Mesophilic Soil Free living 921 QFQD00000000.1 Bac0018616 Flavobacterium johnsoniae "Flavobacterium johnsoniae is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in aerobic conditions. This microbe is known for its optimal growth at a temperature of 20.0°C, indicating a preference for cooler environments. F. johnsoniae has been isolated from multiple habitats, suggesting a versatile ecological niche that may include both aquatic and terrestrial ecosystems. ↵↵The rod shape and aerobic metabolism of F. johnsoniae are characteristic features that may facilitate its survival in oxygen-rich environments, enabling it to utilize available organic substrates effectively. The adaptability of F. johnsoniae to diverse habitats underscores its potential role in nutrient cycling and decomposition processes within those ecosystems. ↵↵Interestingly, the ability of F. johnsoniae to thrive in various environments may also contribute to its significance in microbial community dynamics, where it could interact with other microorganisms, influencing community structure and function. This adaptability and ecological versatility make Flavobacterium johnsoniae an intriguing subject for further research in microbial ecology and environmental microbiology." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae Negative Rod No 1 2 Aerobe 20 Mesophilic Multiple Free living Nonsporulating 986 QFQE00000000.1 Bac0018617 Leifsonia xyli Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia xyli 1575 QFQR00000000.1 Bac0018618 Chelatococcus sp. Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Chelatococcaceae Chelatococcus Chelatococcus sp. 1953771 QFQY00000000.1 Bac0018619 Algibacter marinivivus strain ZY111 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Algibacter Algibacter marinivivus 2100723 QFRI00000000.1 Bac0018620 Escherichia coli strain E-9 "Escherichia coli strain E-9 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli strain E-9 demonstrates optimal growth at 37.0°C, which aligns with the body temperature of many mammals, suggesting a potential association with warm-blooded hosts.↵↵The habitat of E. coli strain E-9 is primarily host-associated, which implies a close ecological relationship with the gastrointestinal tracts of its hosts. This trait is consistent with the behavior of many E. coli strains that inhabit the intestines of mammals, where they contribute to various metabolic processes and interactions.↵↵The combination of its rod shape, Gram-negative cell wall structure, and facultative anaerobic metabolism allows E. coli strain E-9 to adapt to various niches within its host environment. These characteristics may enable the strain to play a role in nutrient absorption and microbial community dynamics in the gut. Understanding the specific ecological roles of E. coli strain E-9 could provide further insights into its contributions to host health and the intricate balance within the intestinal microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QFRT00000000.1 Bac0018621 Streptomyces sp. Act143 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Act143 2200760 QFRX00000000.1 Bac0018622 Escherichia coli strain 14-391 716 "Escherichia coli strain 14-391 716 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement characterized by singles and pairs. This strain is typically found in host-associated environments, suggesting a close relationship with specific organisms. Its optimal growth temperature is around 37.0°C, which aligns with the body temperature of many warm-blooded hosts, indicating its potential adaptation to such environments. As a facultative anaerobe, E. coli strain 14-391 716 can thrive in both aerobic and anaerobic conditions, providing it with a versatile metabolic capacity that may enhance its survival in varied habitats within the host. ↵↵This adaptability not only underscores the ecological flexibility of E. coli but also highlights its potential role in microbial communities within the host, where it may contribute to metabolic processes or interact with other microorganisms. Understanding this strain's characteristics could provide insights into its ecological niche, particularly in relation to its interactions with host physiology and microbiota dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QFSS00000000.1 Bac0018623 Escherichia coli strain NGE-016 "Escherichia coli strain NGE-016 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli NGE-016 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, enabling it to exploit a range of ecological niches within its host. ↵↵These traits indicate that E. coli NGE-016 is well-suited for survival and proliferation in diverse physiological contexts, particularly within the gastrointestinal tract of mammals, where it may play significant roles in digestion and nutrient absorption. The ability to exist in both pairs and singles may also influence its interactions with other microbial communities in the host, potentially affecting gut health and homeostasis. Understanding the specific ecological roles and metabolic pathways of E. coli strain NGE-016 could provide insights into its contributions to the host's microbiome dynamics, as well as its potential applications in biotechnology or microbiome research." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QFTM00000000.1 Bac0018624 Raoultella ornithinolytica strain P079F W "Raoultella ornithinolytica strain P079F W is a Gram-negative, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C. This strain is categorized as a chemoheterotroph, indicating that it derives its energy from organic compounds, a characteristic that aligns with its versatile metabolic capabilities. R. ornithinolytica demonstrates facultative anaerobic respiration, allowing it to adapt to varying oxygen levels in its habitat. ↵↵The habitat of this strain is noted to be multiple, suggesting a wide ecological distribution that may encompass diverse environments, potentially including both terrestrial and aquatic ecosystems. This adaptability to different habitats and energy sources underscores its ecological versatility, enabling it to occupy various niches. ↵↵The combination of these traits, particularly its facultative anaerobic nature and its ability to utilize a range of organic substrates, may facilitate R. ornithinolytica strain P079F W's survival in fluctuating environments where nutrient availability and oxygen levels can vary significantly. Such characteristics could make this strain an important player in microbial communities, contributing to nutrient cycling and organic matter decomposition in its various habitats. Further investigation could elucidate its specific roles in these ecosystems and its interactions with other microbial species." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella ornithinolytica Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 54291 QFTY00000000.1 Bac0018625 Kurthia sibirica strain ATCC 49154 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Kurthia Kurthia sibirica 202750 QFVR00000000.1 Bac0018626 Litorivita pollutaquae strain FSX-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Litorivita Litorivita pollutaquae 2200892 QFVT00000000.1 Bac0018627 Pseudoglutamicibacter cumminsii strain IME1328 IME1328_32 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudoglutamicibacter Pseudoglutamicibacter cumminsii microaerophile 156979 QFWG00000000.1 Bac0018628 Vibrio albus strain E4404 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio albus 2200953 QFWT00000000.1 Bac0018629 Desulfurococcaceae archaeon Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcaceae archaeon 2184738 QFWU00000000.1 Bac0018630 Candidatus Nitrotoga sp. MKT Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellaceae Candidatus Nitrotoga Candidatus Nitrotoga sp. MKT 2184311 QFXH00000000.1 Bac0018631 Candidatus Nitrotoga sp. CP45 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Gallionellaceae Candidatus Nitrotoga Candidatus Nitrotoga sp. CP45 2184309 QFXJ00000000.1 Bac0018632 Phenylobacterium soli strain LX32 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Phenylobacterium Phenylobacterium soli 2170551 QFYQ00000000.1 Bac0018633 Microbispora triticiradicis strain NEAU-HRDPA2-9 C4071 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Microbispora Microbispora triticiradicis 2200763 QFZU00000000.2 Bac0018634 Pseudomonas sp. CFBP13506 P0543 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. CFBP13506 2184010 QFZX00000000.1 Bac0018635 Pseudomonas sp. CFBP13508 P0726 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. CFBP13508 2184009 QFZZ00000000.1 Bac0018636 Pseudomonas fluorescens strain CFBP13510 P0954 "Pseudomonas fluorescens strain CFBP13510 P0954 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, utilizing organic compounds as its energy source, and demonstrates a preference for growth at an optimal temperature of 25.0°C. As an aerobic organism, P. fluorescens strain CFBP13510 P0954 requires oxygen for its metabolic processes, which aligns with its adaptability to diverse habitats.↵↵The ability of Pseudomonas fluorescens to thrive in multiple environments highlights its ecological versatility and potential roles in various biogeochemical cycles. This adaptability may facilitate its participation in nutrient cycling, particularly in soil and aquatic environments, where it can contribute to the degradation of organic matter. The unique metabolic capabilities of this strain could also suggest applications in bioremediation efforts, where its heterotrophic lifestyle may be leveraged to mitigate environmental pollutants. Overall, P. fluorescens strain CFBP13510 P0954 exemplifies the ecological significance of Pseudomonas species in maintaining ecosystem health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 QGAB00000000.1 Bac0018637 Paenibacillus sp. CFBP13512 P1149 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. CFBP13512 2184007 QGAD00000000.1 Bac0018638 Plantibacter flavus strain CFBP13513 P127 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter flavus 150123 QGAE00000000.1 Bac0018639 Pantoea agglomerans strain CFBP13516 P1554 "Pantoea agglomerans strain CFBP13516 P1554 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits a chemoheterotrophic mode of metabolism and is capable of thriving in varied habitats. This strain grows optimally at a temperature of 30.0°C, indicating a preference for moderate environmental conditions. As a facultative anaerobe, Pantoea agglomerans strain CFBP13516 P1554 can utilize both aerobic and anaerobic respiration, which allows it to adapt to fluctuating oxygen levels in its environment.↵↵The broad habitat range of this strain suggests its ecological versatility, likely enabling it to occupy diverse niches where organic substrates are available. The capacity to utilize a variety of energy sources under different oxygen conditions may facilitate its survival in environments undergoing frequent changes in nutrient availability and oxygen levels. Overall, Pantoea agglomerans strain CFBP13516 P1554 exemplifies the adaptive strategies of bacteria that allow them to inhabit a multitude of ecological contexts, potentially contributing to their role in biogeochemical cycles and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 549 QGAH00000000.1 Bac0018640 Pseudomonas sp. CFBP13528 P1744 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. CFBP13528 2184006 QGAJ00000000.1 Bac0018641 Falsochrobactrum shanghaiense strain HN4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Falsochrobactrum Falsochrobactrum shanghaiense 2201899 QGDB00000000.1 Bac0018642 Mucilaginibacter hurinus strain ZR32 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter hurinus 2201324 QGDC00000000.1 Bac0018643 Ruminococcus flavefaciens strain SAb67 "Ruminococcus flavefaciens strain SAb67 is a Gram-positive bacterium primarily found in the gut, specifically within the rumen of ruminant animals. This strain plays a crucial role in the fermentation process, contributing to the breakdown of complex carbohydrates and facilitating nutrient absorption in its host. As a member of the Ruminococcus genus, R. flavefaciens is well-adapted to the anaerobic conditions of the rumen, where it participates in the microbial community that supports the digestive process of herbivorous animals.↵↵The metabolic activities of R. flavefaciens strain SAb67 are essential for the conversion of plant polysaccharides into shorter-chain fatty acids, which serve as vital energy sources for ruminants. By effectively degrading cellulose and hemicellulose, this strain aids in maximizing the nutritional value of fibrous plant materials, thereby influencing the overall health and productivity of the host.↵↵The unique habitat of the rumen provides an intricate environment that fosters diverse microbial interactions, and R. flavefaciens strain SAb67 exemplifies the symbiotic relationship between microorganisms and their hosts. This strain not only highlights the significance of microbial communities in digestive efficiency but also underscores the potential for harnessing such microbes in agricultural practices aimed at enhancing feed conversion and animal health. Understanding the specific contributions of R. flavefaciens strain SAb67 may inform future research on optimizing ruminant nutrition and improving sustainable livestock management strategies." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus flavefaciens positive gut; rumen 1265 QGDI00000000.1 Bac0018644 Jannaschia seohaensis strain DSM 25227 "Jannaschia seohaensis strain DSM 25227 is a Gram-negative rod-shaped bacterium that exhibits an aerobic metabolism, thriving optimally at a temperature of 29.0°C. This strain belongs to the genus Jannaschia, which is noted for its marine habitat preference, suggesting an adaptation to specific ecological niches in oceanic environments. ↵↵As a member of the Gammaproteobacteria class, J. seohaensis is part of a diverse group of bacteria that play significant roles in biogeochemical cycles. Its rod shape may confer advantages in nutrient uptake and mobility within its aquatic environment, potentially influencing its ecological interactions with other microorganisms and the surrounding marine community.↵↵Given its aerobic nature, J. seohaensis likely contributes to the degradation of organic matter in oxygen-rich environments, thereby participating in nutrient cycling. The optimal growth temperature of 29.0°C suggests that this strain may be particularly well-suited for conditions found in temperate marine waters, where it could play a role in the microbial dynamics of coastal ecosystems. Thus, Jannaschia seohaensis strain DSM 25227 exemplifies the characteristics of marine bacteria that are integral to maintaining the health and balance of their respective habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Jannaschia Jannaschia seohaensis Gram-negative rod aerobic 29 mesophilic 475081 QGDJ00000000.1 Bac0018645 Faecalicatena orotica strain NLAE-zl-C242 "Faecalicatena orotica strain NLAE-zl-C242 is a Gram-positive, rod-shaped bacterium that exhibits the ability to form spores, which is a significant trait for its survival in various environmental conditions. This strain thrives optimally at a temperature of 37.0°C, suggesting that it may be well adapted to the warm environments that are characteristic of certain mammalian gastrointestinal tracts. The sporulation capability indicates a potential resilience against adverse conditions, allowing the organism to endure periods of nutrient scarcity or other stressors.↵↵The rod shape of Faecalicatena orotica contributes to its motility and adaptability in its surroundings, which may play a role in its ecological niche. While specific information regarding its ecological role or interactions within its environment is limited, the presence of spore-forming bacteria in the gut microbiota is often associated with contributions to gut health and stability. Given the optimal growth temperature aligning with mammalian body temperature, it is plausible that this strain may participate in symbiotic relationships within the gastrointestinal tract, contributing to the microbial community's diversity and functionality.↵↵Overall, the traits of Faecalicatena orotica strain NLAE-zl-C242 suggest that it may be an important microbial player in the digestive ecosystems of certain hosts, warranting further investigation to elucidate its specific roles and interactions within those systems." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalicatena Faecalicatena orotica Gram-positive rod 37 mesophilic spore-forming 1544 QGDL00000000.1 Bac0018646 Pseudomonas sp. 43mfcvi1.1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 43mfcvi1.1 1761894 QGDM00000000.1 Bac0018647 Fibrobacter sp. UWR4 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWR4 1896218 QGDU00000000.1 Bac0018648 Fructilactobacillus sanfranciscensis strain Gs9 "Fructilactobacillus sanfranciscensis strain Gs9 is a Gram-positive, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, primarily deriving energy from organic compounds. This strain exhibits optimal growth at 30.0°C and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Isolated from dairy habitats, F. sanfranciscensis strain Gs9 plays a significant role in fermentation processes, contributing to the production of lactic acid and other metabolites that are essential in dairy product development.↵↵The ability of F. sanfranciscensis strain Gs9 to adapt to varying oxygen levels enhances its utility in diverse fermentation contexts, including the production of traditional sourdough and other dairy-based products. This adaptability suggests a potential for optimizing fermentation conditions to enhance flavor profiles and product quality in the food industry. Furthermore, its specific habitat in dairy products indicates a specialized role in the microbial ecosystems of fermented dairy, where it may interact with other microbial communities, influencing both flavor and preservation. Through its metabolic activities, F. sanfranciscensis strain Gs9 exemplifies the intricate relationships between microbial organisms and their environments, emphasizing the importance of such strains in food microbiology and fermentation science." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus sanfranciscensis Positive Rod No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Dairy isolate Nonsporulating 1625 QGEF00000000.1 Bac0018649 Rhodohalobacter mucosus strain 8A47 Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Rhodohalobacter Rhodohalobacter mucosus 2079485 QGGB00000000.1 Bac0018650 Micromonospora globispora strain S2901 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora globispora 1450148 QGGF00000000.1 Bac0018651 Pseudaminobacter salicylatoxidans strain DSM 6986 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Pseudaminobacter Pseudaminobacter salicylatoxidans 93369 QGGG00000000.1 Bac0018652 Bacillus sp. VMFN-A1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. VMFN-A1 2135607 QGGK00000000.1 Bac0018653 Tumebacillus permanentifrigoris strain DSM 18773 "Tumebacillus permanentifrigoris strain DSM 18773 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and thrive in aerobic conditions. This strain exhibits an optimal growth temperature of 29.0°C, indicating a preference for moderate thermal environments. As a spore-forming bacterium, T. permanentifrigoris has the capacity to withstand adverse conditions, which may aid its survival in fluctuating environments.↵↵The morphological and physiological traits of T. permanentifrigoris suggest adaptations that allow it to occupy specific ecological niches, potentially in temperate regions or environments with moderate temperatures. The capability of spore formation is particularly significant, as it provides resilience against environmental stressors, including nutrient limitation or temperature fluctuations.↵↵Given the strain's characteristics, it may play a role in the decomposition of organic materials within its habitat, contributing to nutrient cycling. Its aerobic nature further implies an involvement in processes that require oxygen, which may impact local microbial community dynamics. Therefore, T. permanentifrigoris could be an important player in ecosystems where aerobic decomposition processes are prevalent, highlighting its ecological significance in maintaining the balance of microbial life." Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Tumebacillus Tumebacillus permanentifrigoris Gram-positive rod non-motile aerobic 29 mesophilic spore-forming 378543 QGGL00000000.1 Bac0018654 Psychrobacter immobilis strain DSM 7229 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter immobilis aerobic 498 QGGM00000000.1 Bac0018655 Xanthomarina spongicola strain DSM 22637 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Xanthomarina Xanthomarina spongicola 570520 QGGP00000000.1 Bac0018656 Actinoplanes xinjiangensis strain DSM 45184 "Actinoplanes xinjiangensis strain DSM 45184 is a Gram-positive, spore-forming bacterium that thrives in aerobic conditions, with an optimal growth temperature of 29.0°C. This strain, part of the Actinoplanes genus, is characterized by its ability to produce spores, which are crucial for its survival in varying environmental conditions. The Gram-positive nature of A. xinjiangensis indicates a thick peptidoglycan layer in its cell wall, a trait commonly associated with the capacity to withstand desiccation and other environmental stressors.↵↵The aerobic requirement of this strain suggests that it relies on oxygen for its metabolism, potentially influencing its habitat preferences and ecological interactions. The optimal growth temperature of 29.0°C indicates a mesophilic nature, which may align with specific niches where moderate temperatures prevail, such as soil or decomposing organic matter.↵↵Understanding the traits of Actinoplanes xinjiangensis can provide insights into its potential roles in biogeochemical cycles, particularly in nutrient recycling in aerobic environments. The spore-forming capability may enhance its resilience and distribution, allowing it to occupy diverse ecological niches. Further studies could elucidate its specific contributions to soil health and microbial community dynamics, highlighting the importance of this strain in its ecosystem." Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes xinjiangensis Gram-positive aerobic 29 mesophilic spore-forming 512350 QGGR00000000.1 Bac0018657 Cupriavidus plantarum strain SLV-132 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus plantarum 942865 QGGT00000000.1 Bac0018658 Limosilactobacillus reuteri strain LR12 "Limosilactobacillus reuteri strain LR12 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. L. reuteri strain LR12 is known to inhabit multiple habitats, suggesting a versatile ecological role that may contribute to its adaptability and survival in diverse conditions. ↵↵The facultative anaerobic nature of this strain allows it to metabolize substrates in the presence or absence of oxygen, potentially facilitating its growth in varied environments, including the gastrointestinal tracts of hosts and other niches where oxygen levels fluctuate. The rod shape and chain arrangement may also influence its physiological interactions within these habitats.↵↵Given its diverse habitat preferences and metabolic flexibility, Limosilactobacillus reuteri strain LR12 may play a significant role in microbial communities. Its presence in multiple environments underscores its potential contributions to ecosystem dynamics, such as nutrient cycling and interactions with other microorganisms, and may also highlight its importance in the maintenance of gut health in various hosts. Further studies could elucidate the specific ecological functions and interactions of this strain within its various habitats." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 QGHS00000000.1 Bac0018659 Leucothrix arctica strain IMCC9719 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Leucothrix Leucothrix arctica 1481894 QGKL00000000.1 Bac0018660 Enterococcus faecium strain HPCN13 "Enterococcus faecium strain HPCN13 is a Gram-positive coccus that exhibits facultative anaerobic growth. This strain is notably isolated from fermented mare milk, suggesting its potential role in dairy fermentation processes. The coccal shape of E. faecium HPCN13 is characteristic of the Enterococcus genus, which typically comprises spherical bacteria that can occur in pairs or chains. ↵↵Being a facultative anaerobe, E. faecium strain HPCN13 can thrive in both aerobic and anaerobic environments, which may contribute to its adaptability in various fermentation conditions, particularly in the nutrient-rich medium of mare milk. The ability to ferment lactose and other carbohydrates may facilitate the production of lactic acid and other metabolic byproducts, which are pivotal in the preservation and flavor development of fermented dairy products.↵↵The specific habitat of fermented mare milk not only highlights E. faecium HPCN13's ecological niche but also suggests a possible symbiotic relationship with other microorganisms present in the fermentation process. This strain's adaptability and metabolic capabilities could play an essential role in the microbial dynamics of traditional dairy fermentation, contributing to product quality and safety. Further investigation into its fermentation properties may provide insights into its applications in dairy science and microbiological studies." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QGKP00000000.1 Bac0018661 Stenotrophomonas maltophilia strain HPCN19 "Stenotrophomonas maltophilia strain HPCN19 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments. This strain is part of a genus known for its versatility, as it can be found in multiple habitats, including soil, water, and various surfaces in clinical and non-clinical settings. The ability of S. maltophilia to grow in diverse ecological niches suggests a remarkable adaptability, which may be attributed to its metabolic flexibility and capacity to utilize a range of organic compounds.↵↵Stenotrophomonas maltophilia is often noted for its role in the microbiome of both natural and artificial environments, indicating its potential significance in biogeochemical cycles. Its aerobic nature further highlights its ecological role, as it engages in oxidative metabolism, which is essential for nutrient cycling in oxygen-rich environments. Understanding the environmental resilience and metabolic capabilities of strain HPCN19 could provide insights into its interactions within microbial communities and its potential applications in biotechnology or bioremediation efforts. Overall, strain HPCN19 exemplifies the diverse ecological roles that members of the S. maltophilia species can play across various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 QGKQ00000000.1 Bac0018662 Meridianimarinicoccus roseus strain TG-679 69 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Meridianimarinicoccus Meridianimarinicoccus roseus 2072018 QGKU00000000.1 Bac0018663 Lactobacillus melliventris strain ESL0184 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus melliventris 1218507 QGLG00000000.1 Bac0018664 Bifidobacterium asteroides strain ESL0170 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium asteroides bee bread; bee pollen; brood; brood comb; digestive tract; fresh honey; hindgut; honey; honey crop 1684 QGLH00000000.1 Bac0018665 Bifidobacterium indicum strain ESL0197 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium indicum anaerobic 1691 QGLI00000000.1 Bac0018666 Bifidobacterium asteroides strain ESL0200 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium asteroides bee bread; bee pollen; brood; brood comb; digestive tract; fresh honey; hindgut; honey; honey crop 1684 QGLL00000000.1 Bac0018667 Streptomyces sp. FT05W Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. FT05W 2202417 QGMR00000000.1 Bac0018668 Methanospirillum lacunae strain Ki8-1 DSM22751_25 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum lacunae 668570 QGMY00000000.1 Bac0018669 Rhodococcus sp. Eu-32 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. Eu-32 1017319 QGNK00000000.1 Bac0018670 Pedobacter yonginense strain KCTC22721 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter yonginense 651869 QGNZ00000000.1 Bac0018671 Rummeliibacillus sp. TYF005 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Rummeliibacillus Rummeliibacillus sp. TYF005 2058214 QGPZ00000000.1 Bac0018672 Ochrobactrum sp. POC9 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum sp. POC9 2203419 QGST00000000.1 Bac0018673 Micromonospora sp. S4605 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. S4605 1420897 QGSW00000000.1 Bac0018674 Gracilibacillus dipsosauri strain DD1 "Gracilibacillus dipsosauri strain DD1 is a Gram-positive, spore-forming bacterium that utilizes organic compounds as its energy source, classifying it as an organotrophic chemotroph. The strain's ability to form spores suggests a resilience to environmental stressors, enabling it to survive in fluctuating conditions where nutrients may be limited. ↵↵As a member of the genus Gracilibacillus, this strain exhibits characteristics typical of its relatives, such as a robust cellular structure conducive to survival and adaptation. The organotrophic nature indicates that G. dipsosauri strain DD1 likely plays a role in the breakdown and recycling of organic matter within its environment, potentially contributing to nutrient cycling in soil or other ecological niches. ↵↵While specific ecological roles and interactions remain to be elucidated, the combination of its Gram-positive nature and sporulation capability may suggest a capacity for both resistance and flexibility in diverse habitats. This strain could serve as an important model for studying the dynamics of microbial communities, particularly in environments where organic material is the primary energy source. Understanding its metabolic pathways and ecological interactions could yield insights into microbial ecology and the functional roles of spore-forming bacteria in ecosystem health and stability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gracilibacillus Gracilibacillus dipsosauri Gram-positive organotroph; chemotroph spore-forming 178340 QGTD00000000.1 Bac0018675 Nocardiopsis sp. L17-MgMaSL7 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis Nocardiopsis sp. L17-MgMaSL7 1938893 QGTF00000000.1 Bac0018676 Finegoldia magna strain DSM 20470 "Finegoldia magna strain DSM 20470 is a Gram-positive coccus that thrives in anaerobic environments. This microbe is characterized by its spherical morphology, which is typical of cocci, and it can be found in various habitats, indicating its adaptability to different ecological niches. As an anaerobe, Finegoldia magna strain DSM 20470 requires environments devoid of oxygen for growth, suggesting a metabolic reliance on fermentation or other anaerobic metabolic pathways.↵↵The ability of Finegoldia magna to inhabit multiple environments may contribute to its ecological versatility, allowing it to participate in diverse microbial communities. This organism could play a role in the breakdown of organic matter and nutrient cycling within its ecosystems, where anaerobic conditions are prevalent. Such interactions underscore the significance of Finegoldia magna not only as a member of the microbial community but also as a potential contributor to the ecological balance in anaerobic habitats.↵↵Further research into the specific roles and interactions of Finegoldia magna strain DSM 20470 within its environments could enhance our understanding of its biological significance and the broader ecological implications of anaerobic microorganisms." Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Finegoldia Finegoldia magna Positive Cocci No 1 1 Anaerobe Mesophilic Multiple Free living 1260 QGTH00000000.1 Bac0018677 Nocardia neocaledoniensis strain DSM 44717 "Nocardia neocaledoniensis strain DSM 44717 is a Gram-positive, aerobic bacterium characterized by its rod-shaped morphology and optimal growth temperature of 29.0°C. This strain belongs to the genus Nocardia, which is known for its filamentous growth and complex lipid-rich cell wall. The Gram-positive nature of N. neocaledoniensis indicates the presence of a thick peptidoglycan layer, which is a hallmark of its cellular structure, potentially influencing its resistance to certain environmental stresses.↵↵The aerobic requirement of this bacterium suggests that it thrives in oxygen-rich environments, which may play a role in its metabolic processes and ecological interactions. Optimal growth at 29.0°C implies a preference for moderate temperatures, aligning with its adaptation to specific ecological niches that may include soil environments or decaying organic matter, typical habitats for members of the Nocardia genus.↵↵Understanding the growth characteristics of N. neocaledoniensis strain DSM 44717 can provide insights into its potential roles in biodegradation and nutrient cycling in terrestrial ecosystems. Its ability to thrive in aerobic conditions at a moderate temperature may facilitate its involvement in the breakdown of complex organic compounds, contributing to soil health and ecosystem sustainability." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia neocaledoniensis Gram-positive rod non-motile aerobic 29 mesophilic 236511 QGTL00000000.1 Bac0018678 Pseudidiomarina maritima strain 125B1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina maritima 519453 QGTT00000000.1 Bac0018679 Cytobacillus oceanisediminis strain 15_TX Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus oceanisediminis 665099 QGTW00000000.1 Bac0018680 Chromohalobacter israelensis strain 40a_TX Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter israelensis 141390 QGTY00000000.1 Bac0018681 Melaminivora alkalimesophila strain DSM 26006 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Melaminivora Melaminivora alkalimesophila 1165852 QGUB00000000.1 Bac0018682 Eubacterium limosum strain 8486cho Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium limosum rumen 1736 QGUD00000000.1 Bac0018683 Caldicoprobacter oshimai "Caldicoprobacter oshimai is a Gram-positive, spore-forming rod that thrives in anaerobic conditions and exhibits optimal growth at a temperature of 45.0°C. This thermophilic bacterium is notable for its ability to survive in high-temperature environments, which may include geothermal habitats or hot springs, where such conditions are prevalent. The Gram-positive cell wall structure contributes to its resilience under extreme thermal conditions, allowing it to maintain structural integrity and functionality.↵↵The ability to form spores is a significant trait for Caldicoprobacter oshimai, as it facilitates survival during unfavorable environmental conditions, enabling the microbe to endure heat and nutrient depletion. Understanding the sporulation process in this organism may provide insights into its life cycle and ecological strategies.↵↵Given its anaerobic requirement, Caldicoprobacter oshimai likely plays a role in the microbial communities of thermophilic environments, contributing to biogeochemical cycles in such habitats. Its metabolic processes may involve fermentation pathways that utilize organic substrates available in these ecosystems, which can have implications for nutrient recycling and energy flow. Further studies may elucidate the specific substrates that this bacterium can utilize and its interactions within the microbial community, enhancing our understanding of thermophilic anaerobes in extreme environments." Bacillati Bacillota Clostridia Caldicoprobacterales Caldicoprobacteraceae Caldicoprobacter Caldicoprobacter oshimai Gram-positive rod non-motile anaerobic 45 thermophilic spore-forming 551788 QGUV00000000.2 Bac0018684 Actinomycetes bacterium Bacillati Actinomycetota Actinomycetes Actinomycetes bacterium 1883427 QGUZ00000000.2 Bac0018685 Vulcanimicrobiota bacterium Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Meridianibacter Candidatus Meridianibacter frigidus 2829333 QHBJ00000000.1 Bac0018686 Chthoniobacterales bacterium Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacterales bacterium 2201154 QHBM00000000.1 Bac0018687 Leptospira stimsonii strain Yale Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira stimsonii 2202203 QHCT00000000.1 Bac0018688 Corynebacterium heidelbergense strain 647 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium heidelbergense 2055947 QHCV00000000.1 Bac0018689 Acuticoccus sediminis strain PTG4-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Amorphaceae Acuticoccus Acuticoccus sediminis 2184697 QHHQ00000000.1 Bac0018690 Amycolatopsis balhimycina DSM 5908 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis balhimycina 29 mesophilic 1081091 QHHU00000000.1 Bac0018691 Actinoplanes sp. ATCC 53533 AA000006-724_GDW00994 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes sp. ATCC 53533 1288362 QHHV00000000.1 Bac0018692 Amycolatopsis sp. WAC 01416 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. WAC 01416 2203196 QHHX00000000.1 Bac0018693 Nonomuraea sp. WAC 01424 AA000381-83_WAC01424 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea sp. WAC 01424 2203200 QHHZ00000000.1 Bac0018694 Amycolatopsis sp. WAC 04169 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. WAC 04169 2203197 QHJI00000000.1 Bac0018695 Amycolatopsis sp. WAC 04182 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. WAC 04182 2203198 QHJJ00000000.1 Bac0018696 Streptomyces sp. WAC 05379 AA000200-781_WAC05379 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 05379 2203207 QHJL00000000.1 Bac0018697 Streptomyces sp. WAC 06725 AA000228-971_WAC06725 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 06725 2203209 QHJO00000000.1 Bac0018698 Coraliomargarita sinensis strain WN38 Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Coraliomargaritaceae Coraliomargarita Coraliomargarita sinensis 2174842 QHJQ00000000.1 Bac0018699 Staphylococcus warneri strain YZ-1 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus warneri 1292 QHJX00000000.1 Bac0018700 Streptomyces sp. WAC 00631 AA000826-21_WAC00631 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 00631 2203201 QHKJ00000000.2 Bac0018701 Streptomyces sp. WAC 01325 AA000377-619_WAC01325 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC 01325 2203202 QHKK00000000.1 Bac0018702 Amycolatopsis sp. WAC 01376 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. WAC 01376 2203195 QHKL00000000.1 Bac0018703 Hymenobacter edaphi strain NL Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter edaphi 2211146 QHKM00000000.1 Bac0018704 Paraburkholderia lacunae strain S27 S27_96 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia lacunae 2211104 QHKS00000000.1 Bac0018705 Cryobacterium arcticum strain SK-1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium arcticum 670052 QHLY00000000.1 Bac0018706 Arthrobacter psychrochitiniphilus strain GP3 "Arthrobacter psychrochitiniphilus strain GP3 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 16.0°C. This strain is characterized by its non-spore-forming nature, which distinguishes it from many other bacterial genera that rely on sporulation for survival in adverse conditions. ↵↵Belonging to the genus Arthrobacter, this microbe is expected to possess metabolic versatility, enabling it to utilize various substrates in its environment. The preference for lower temperatures suggests its adaptation to cold environments, potentially influencing its ecological niche and interactions within microbial communities. ↵↵As a representative of cold-adapted bacteria, A. psychrochitiniphilus strain GP3 may play a role in the decomposition of organic matter in polar or temperate ecosystems, particularly in environments where chitin is present, given the implication of its name. Understanding its metabolic pathways and ecological roles could provide insights into nutrient cycling in cold habitats, highlighting the importance of microbial life in maintaining ecosystem functions in extreme environments." Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter psychrochitiniphilus Gram-positive rod aerobic 16 psychrotolerant non-spore-forming 291045 QHLZ00000000.1 Bac0018707 Chryseobacterium sp. CH21 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. CH21 713556 QICI00000000.1 Bac0018708 Dysgonomonas alginatilytica strain DSM 100214 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Dysgonomonadaceae Indolivaga Indolivaga alginatilytica 1605892 QICL00000000.1 Bac0018709 Sinimarinibacterium flocculans strain DSM 104150 Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Sinimarinibacterium Sinimarinibacterium flocculans 985250 QICN00000000.1 Bac0018710 UNVERIFIED_ORG: Aeromonas veronii strain E2102 "Aeromonas veronii strain E2102 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as an aerobe, indicating that it requires oxygen for its metabolic processes. A. veronii strain E2102 is commonly found in sediment habitats, where it likely plays a role in the cycling of nutrients and organic matter.↵↵The morphology and arrangement of A. veronii strain E2102, characterized by its rod shape and tendency to form pairs, may confer specific advantages in sedimentary environments, potentially facilitating its interaction with other microbial communities. The presence of this strain in sediment suggests its contribution to the ecosystem's microbial diversity and its involvement in biogeochemical processes.↵↵Further research could elucidate the specific interactions of A. veronii strain E2102 with other sediment-dwelling microorganisms, potentially revealing its role in nutrient cycling and sediment stability. Understanding these interactions may enhance our comprehension of microbial dynamics in aquatic sediment ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas veronii Negative Rod Yes Aerobe Mesophilic Sediment Pairs - Singles Animal; Human 654 QIMH00000000.1 Bac0018711 Wolbachia endosymbiont of Leptopilina clavipes strain GBW Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Leptopilina clavipes 260213 QJHA00000000.1 Bac0018712 Blautia sp. BCRC 81119 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. BCRC 81119 2212480 QJHD00000000.1 Bac0018713 Flavobacterium cheongpyeongense strain IMCC34759 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium cheongpyeongense 2212651 QJHK00000000.1 Bac0018714 Cutibacterium acnes strain T27324 "Cutibacterium acnes strain T27324 is a Gram-positive, rod-shaped bacterium that is classified as a nonsporulating anaerobe. This strain thrives at an optimal temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, suggesting its presence in the human body, particularly on the skin. As an anaerobic organism, C. acnes strain T27324 utilizes fermentation pathways for energy, thriving in environments with low oxygen availability.↵↵The strain's ability to colonize skin, coupled with its anaerobic nature, highlights its potential role in the skin microbiome, where it may contribute to maintaining microbial balance. While traditionally associated with various skin conditions, the specific ecological interactions and functional roles of C. acnes strain T27324 within the diverse skin microbiota remain subjects of ongoing research. Given its optimal growth conditions, this strain may play a crucial role in the metabolism of skin lipids and the production of short-chain fatty acids, which could have implications for skin health and the prevention of dysbiosis. Understanding the specific functions and interactions of C. acnes strain T27324 within its host-associated habitat could provide valuable insights into its contributions to skin physiology and its potential impacts on human health." Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 QJIY00000000.1 Bac0018715 Alteromonas sp. I10 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. I10 1938740 QJJN00000000.1 Bac0018716 Nitrosomonas sp. Nm84 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas sp. Nm84 200124 QJJP00000000.1 Bac0018717 Streptohalobacillus salinus strain DSM 22440 "Streptohalobacillus salinus strain DSM 22440 is a Gram-positive, rod-shaped bacterium that exhibits notable characteristics pertinent to its classification and potential applications. This strain is non-spore-forming, which suggests that it relies on vegetative growth for its survival and reproduction rather than sporulation, a trait that may influence its resilience in various environmental conditions. ↵↵The optimal growth temperature for S. salinus strain DSM 22440 is 37.0 °C, indicating that it thrives at physiological temperatures, which is typical for many bacteria that inhabit warm-blooded hosts or environments with similar thermal profiles. This temperature preference may also imply a certain level of metabolic activity that could be harnessed for biotechnological applications, particularly in industrial microbiology or fermentation processes.↵↵Considering its Gram-positive nature, S. salinus strain DSM 22440 likely possesses a thick peptidoglycan layer in its cell wall, which may contribute to its structural integrity and influence its interactions with other microorganisms in its environment. This characteristic could play a role in its ecological niche, particularly in environments where competition with other microbial species is prevalent.↵↵Overall, the traits of Streptohalobacillus salinus strain DSM 22440 may position it as a valuable strain for research and application in microbiological studies, especially in contexts where temperature control and cell wall properties are critical factors in microbial performance and sustainability." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Streptohalobacillus Streptohalobacillus salinus Gram-positive rod 37 mesophilic non-spore-forming 621096 QJJR00000000.1 Bac0018718 Hungatella effluvii strain DSM 24995 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella effluvii Yes anaerobic 1096246 QJKD00000000.1 Bac0018719 Pseudomonas sp. LAIL14HWK12:I1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. LAIL14HWK12:I1 1259805 QJKG00000000.1 Bac0018720 Dielma fastidiosa strain JC118 "Dielma fastidiosa strain JC118 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 30.0°C. This strain exhibits typical characteristics of bacteria in its class, including its morphology and metabolic requirements. The nonsporulating nature of D. fastidiosa strain JC118 suggests that it relies on other survival strategies in unfavorable environmental conditions, rather than forming spores, which could indicate specific adaptations to its ecological niche.↵↵Given its anaerobic requirement, D. fastidiosa strain JC118 may play a role in organic matter decomposition in low-oxygen environments, potentially influencing nutrient cycling within its habitat. The optimal growth temperature of 30.0°C suggests that this microbe may be well-suited to warm environments, possibly contributing to its ecological interactions in such regions. Understanding the environmental roles and metabolic capabilities of D. fastidiosa strain JC118 could provide insights into its potential applications in biotechnology or environmental microbiology, particularly in processes that require anaerobic microorganisms." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Dielma Dielma fastidiosa negative Rod Yes anaerobic 30 Nonsporulating 1034346 QJKH00000000.1 Bac0018721 Thermoflavimicrobium daqui strain FBKL4.011 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Thermoflavimicrobium Thermoflavimicrobium daqui 2137476 QJKK00000000.1 Bac0018722 Lactobacillus helveticus strain FAM1450 "Lactobacillus helveticus strain FAM1450 is a Gram-positive, rod-shaped bacterium that typically forms chains. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. The versatility in its oxygen requirement suggests that L. helveticus FAM1450 can adapt to various ecological niches, potentially contributing to its presence in multiple habitats. ↵↵Lactobacillus helveticus species are widely recognized for their role in the dairy industry, particularly in cheese production, where they are integral to fermentation processes. The ability of this strain to ferment sugars and produce lactic acid underscores its importance in food microbiology. Furthermore, the chain arrangement of cells may influence its metabolic interactions within microbial communities, highlighting a potential for cooperative behavior in fermentation settings.↵↵Given its multiple habitats and adaptability, L. helveticus strain FAM1450 may also play a role in the human gut microbiome, although further research would be necessary to establish specific interactions and contributions to gut health. Understanding the ecological implications of its facultative anaerobic nature could provide insights into its functional roles in diverse microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 QJOJ00000000.1 Bac0018723 Lactobacillus helveticus strain FAM19188 "Lactobacillus helveticus strain FAM19188 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Lactobacillus helveticus species are commonly found in diverse habitats, which may include dairy products, fermented foods, and the gastrointestinal tracts of animals. ↵↵As a member of the Lactobacillus genus, strain FAM19188 is likely involved in the fermentation process, contributing to the production of lactic acid, which can play a critical role in food preservation and flavor enhancement. Its adaptability to various oxygen levels suggests a metabolic versatility that may enable it to colonize different ecological niches effectively. ↵↵The ability of Lactobacillus helveticus strain FAM19188 to form chains might also have implications for its survival and functionality in food matrices, as this arrangement can enhance its interaction with other microbial populations and substrates. Furthermore, the strain's presence in multiple habitats underscores its potential ecological significance, particularly in relation to its role in the fermentation of dairy products, which is a key factor in the development of distinct flavors and textures in various cheeses. This adaptability and functional versatility highlight the strain's importance in both ecological and industrial microbiology contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus helveticus Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1587 QJOO00000000.1 Bac0018724 Avibacterium paragallinarum strain SCPM-O-B-8407 "Avibacterium paragallinarum strain SCPM-O-B-8407 is a nonsporulating, Gram-negative rod-shaped bacterium. This organism is part of a genus that is primarily associated with avian hosts, particularly poultry. The Gram-negative classification indicates that A. paragallinarum possesses a characteristic outer membrane structure, which can influence its interactions with host organisms and environmental conditions.↵↵The rod morphology of this strain suggests a potential for motility, although motility traits were not specified in the provided data. Nonsporulating bacteria like A. paragallinarum typically rely on alternative survival strategies, such as forming biofilms or utilizing metabolic pathways that allow them to thrive in specific environments. ↵↵Understanding the traits of A. paragallinarum strain SCPM-O-B-8407 can provide insights into its ecological niche within avian microbiomes. Its Gram-negative nature may confer advantages in colonizing specific anatomical sites in birds, where it could interact with other microbial inhabitants or influence the host's health. Given that nonsporulating bacteria often require specific environmental conditions for survival, A. paragallinarum's ecological adaptability might be linked to its association with the avian gastrointestinal tract or respiratory system, where it may fulfill roles that are consistent with maintaining host health or influencing microbial community dynamics. Further studies are needed to elucidate the specific ecological roles and interactions of this strain within avian environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Avibacterium Avibacterium paragallinarum negative Rod Nonsporulating 728 QJPI00000000.1 Bac0018725 Sanguibacteroides justesenii strain OUH 969102 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Sanguibacteroides Sanguibacteroides justesenii 1547597 QJPL00000000.1 Bac0018726 Serratia marcescens strain 1058 "Serratia marcescens strain 1058 is a Gram-negative, rod-shaped bacterium characterized by its nonsporulating nature and facultative anaerobic metabolism, which allows it to thrive in varied oxygen conditions. This strain is a chemoheterotroph, deriving energy from organic compounds, and exhibits optimal growth at 37.0°C, reflecting a preference for temperatures commonly encountered in warm-blooded hosts.↵↵Serratia marcescens strains, including 1058, are known to inhabit multiple environments, indicating their adaptability and potential resilience in diverse ecological niches. The ability to grow in both aerobic and anaerobic conditions suggests that this strain can exploit a wide array of substrates across different habitats, enhancing its ecological versatility. ↵↵The presence of such traits positions Serratia marcescens strain 1058 as a notable organism in microbial studies, particularly in investigations of microbial interactions within its ecosystems. Its adaptability to varying oxygen levels and temperatures may provide insights into the microbial dynamics in fluctuating environments, such as those influenced by human activities or climate change. Further studies could elucidate its roles in biogeochemical cycles or its interactions with other microbial communities, thereby contributing to our understanding of microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 QJPU00000000.1 Bac0018727 Serratia marcescens strain 1309 "Serratia marcescens strain 1309 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic characteristics and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this strain utilizes organic compounds as its energy source, allowing it to adapt to a variety of habitats. Its ability to grow in both aerobic and anaerobic environments reflects its metabolic versatility, which is advantageous for survival in diverse ecological niches.↵↵This strain's capacity to inhabit multiple environments suggests a potential for ecological resilience and adaptability, potentially contributing to its presence in various settings, including soil, water, and as a part of the microbiota in more complex organisms. The ecological implications of such adaptability may extend to its role in nutrient cycling and interactions within microbial communities, where it could influence the dynamics of competing species or contribute to the degradation of organic materials. Understanding the ecological role of Serratia marcescens strain 1309 could provide insights into its interactions within its habitat and its potential applications in biotechnology and environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 QJPV00000000.1 Bac0018728 Pseudomonas koreensis strain LB-090714 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas koreensis 198620 QJRR00000000.1 Bac0018729 Pseudomonas jilinensis strain JS15-10A1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas jilinensis 2078689 QJSA00000000.1 Bac0018730 Enterobacter cloacae strain GEO_4_Eff_A "Enterobacter cloacae strain GEO_4_Eff_A is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This organism is part of a diverse genus known for its ecological versatility, as indicated by its ability to inhabit multiple habitats. The flexibility in oxygen utilization may confer advantages in fluctuating environmental conditions, facilitating its survival and growth in various niches.↵↵The strain's rod shape is typical of many Enterobacter species, which often contribute to their functional roles in microbial communities. While specific details regarding its ecological interactions or applications are not provided, the broad habitat range suggests potential involvement in nutrient cycling and interactions with other microorganisms. This trait underscores the importance of Enterobacter cloacae strain GEO_4_Eff_A in diverse ecosystems, where its metabolic capabilities may play a significant role in maintaining the balance of microbial populations. Further studies could elucidate the specific environmental conditions that favor its proliferation and the implications for ecological dynamics within its habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 QJSL00000000.1 Bac0018731 Rhizobium sp. PP-WC-1G-195 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PP-WC-1G-195 2135652 QJSS00000000.1 Bac0018732 Rhizobium sp. PP-F2F-G20b Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PP-F2F-G20b 2183981 QJSV00000000.1 Bac0018733 Paenibacillus barcinonensis strain CECT 7022 "Paenibacillus barcinonensis strain CECT 7022 is a Gram-positive, rod-shaped bacterium that is capable of sporulation and thrives under anaerobic conditions. This strain exhibits an optimal growth temperature of 25.0°C, indicating a preference for moderate thermal environments. As a member of the Paenibacillus genus, it shares characteristics typical of soil-dwelling microorganisms, which are often noted for their diverse metabolic capabilities and interactions within microbial communities.↵↵The spore-forming ability of P. barcinonensis strain CECT 7022 suggests a robust adaptation mechanism, allowing it to survive adverse environmental conditions, such as nutrient depletion or unfavorable temperatures. This trait is particularly significant in ecological contexts, as spores can facilitate long-term survival and dormancy, contributing to the resilience of microbial populations in fluctuating habitats.↵↵The anaerobic requirement of this strain aligns with the metabolic strategies observed in many members of the Paenibacillus genus, which often thrive in environments where oxygen is limited. This may include anaerobic niches such as sediments, decaying organic matter, or the digestive systems of various organisms, where they may play important roles in organic matter decomposition and nutrient cycling.↵↵Overall, the unique combination of traits exhibited by Paenibacillus barcinonensis strain CECT 7022 positions it as a noteworthy organism within the broader context of microbial ecology, particularly in anaerobic environments where its sporulation capability could enhance its ecological persistence." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus barcinonensis Gram-positive rod anaerobic 25 mesophilic spore-forming 198119 QJSW00000000.1 Bac0018734 Winogradskyella epiphytica strain CECT 7945 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella epiphytica 262005 QJTD00000000.1 Bac0018735 Bacillus sp. 196mf Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. 196mf 1761754 QJTG00000000.1 Bac0018736 Rhodopseudomonas faecalis strain JCM 11668 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas faecalis 99655 QJTI00000000.1 Bac0018737 Pseudomonas syringae pv. syringae strain B728a "Pseudomonas syringae pv. syringae strain B728a is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, meaning it derives its energy from organic compounds, which enables it to thrive in a variety of habitats. As an aerobic organism, P. syringae pv. syringae strain B728a requires oxygen for its metabolic processes, which is a characteristic feature of many members of the Pseudomonas genus.↵↵The versatility of P. syringae pv. syringae strain B728a in utilizing diverse organic substrates may contribute to its adaptability in different environmental conditions. Its ability to inhabit multiple habitats suggests a potential role in various ecological niches, where it could participate in nutrient cycling and interact with other microbial communities. Moreover, the strain's characteristics may allow it to contribute to the degradation of pollutants, highlighting its significance in bioremediation contexts. Understanding the traits of Pseudomonas syringae pv. syringae strain B728a can provide insights into its ecological roles and potential applications in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 321 QJTV00000000.1 Bac0018738 UNVERIFIED_CONTAM: Pseudomonas syringae pv. pisi strain 1452A "Pseudomonas syringae pv. pisi strain 1452A is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds. As an aerobic organism, it requires oxygen for its metabolic processes. Pseudomonas syringae pv. pisi strain 1452A is noted for its adaptability, inhabiting multiple environments, which may contribute to its resilience and potential interactions with various ecological niches.↵↵The versatility of this strain’s habitat suggests it may play a role in diverse microbial communities, influencing nutrient cycling and organic matter decomposition. Its ability to thrive in aerobic conditions could facilitate interactions with other microorganisms, potentially affecting the dynamics of its local ecosystem. This adaptability underscores the importance of studying Pseudomonas syringae pv. pisi strain 1452A to better understand its ecological roles and its contributions to the microbial landscape within the environments it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 59510 QJTZ00000000.1 Bac0018739 Halomonas elongata strain MH25661 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas elongata 2746 QJUB00000000.1 Bac0018740 Pseudomonas daroniae strain P9A Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Phytopseudomonas Phytopseudomonas daroniae 2487519 QJUI00000000.1 Bac0018741 Arthrobacter livingstonensis strain LI2 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter livingstonensis 670078 QJVD00000000.1 Bac0018742 Paenibacillus flagellatus strain DXL2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus flagellatus 2211139 QJVJ00000000.1 Bac0018743 Vibrio paracholerae strain 2017V-1105 "Vibrio paracholerae strain 2017V-1105 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits facultative anaerobic metabolism. This strain demonstrates a preference for an optimal growth temperature of 20.0°C, indicating its potential adaptation to cooler aquatic environments. As a heterotroph, V. paracholerae strain 2017V-1105 relies on organic compounds for energy, which suggests its ability to thrive in nutrient-rich habitats.↵↵The diverse habitats occupied by this strain highlight its ecological versatility, potentially allowing it to inhabit various environments, including marine and estuarine ecosystems. Given its facultative anaerobic nature, this bacterium can adapt to fluctuations in oxygen availability, which may be a significant advantage in dynamic environments where oxygen levels can vary. ↵↵Overall, the traits of V. paracholerae strain 2017V-1105 reflect its adaptability and ecological resilience, indicating its potential roles in nutrient cycling and interactions within microbial communities in aquatic ecosystems. Further studies could illuminate its specific contributions to these ecological processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio paracholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 650003 QKKT00000000.1 Bac0018744 Vibrio paracholerae strain 2017V-1110 "Vibrio paracholerae strain 2017V-1110 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits heterotrophic metabolism, utilizing organic compounds as its energy source, and demonstrates a facultative anaerobic respiration capability, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for this strain is 20.0°C, indicating a preference for cooler aquatic habitats.↵↵The ecological versatility of Vibrio paracholerae strain 2017V-1110 is noteworthy, as it is reported to inhabit multiple environments, potentially including marine and estuarine ecosystems where temperature and oxygen levels can vary significantly. The strain's ability to function in diverse oxygen conditions suggests a role in nutrient cycling in such habitats, as it can adapt to fluctuating environmental conditions. Understanding the ecological dynamics of this strain may provide insights into its interactions with other microorganisms and its potential contributions to microbial communities in various aquatic environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio paracholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 650003 QKKU00000000.1 Bac0018745 Curtobacterium sp. MCPF17_046 WOOD46.NODE36 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCPF17_046 2175663 QKLB00000000.1 Bac0018746 Pseudomonas sp. TKO29 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. TKO29 2052591 QKLM00000000.1 Bac0018747 Metamycoplasma alkalescens strain ATCC 29103 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma alkalescens 45363 QKLP00000000.1 Bac0018748 Pedobacter nutrimenti strain DSM 27372 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter nutrimenti aerobic 1241337 QKLU00000000.1 Bac0018749 Pantoea sp. AG1095 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea sp. AG1095 2184004 QKMJ00000000.1 Bac0018750 Candidatus Margulisiibacteriota bacterium Bacillati Candidatus Margulisiibacteriota Candidatus Margulisiibacteriota bacterium 2053573 QKMY00000000.1 Bac0018751 Fusobacterium nucleatum strain 12230 "Fusobacterium nucleatum strain 12230 is a Gram-negative, rod-shaped bacterium that thrives as a nonsporulating anaerobe, with an optimal growth temperature of 37.0 °C. This strain is predominantly host-associated, indicating a symbiotic or commensal relationship with its host organisms. ↵↵Fusobacterium nucleatum is known for its role in the human oral cavity, where it is part of the normal microbiota, although it can also be implicated in various oral diseases. The anaerobic nature of this bacterium suggests that it occupies niches within the host that are low in oxygen, such as periodontal pockets or other anaerobic environments within the body. ↵↵The ability of F. nucleatum to establish itself in these anaerobic habitats may be critical for its survival and potential interactions with other microbial communities. Its presence in these specific environments highlights the intricate relationships within the microbiome and the potential for interspecies interactions, which can influence both health and disease states in the host. Understanding the ecological role of F. nucleatum strain 12230 could provide insights into its contribution to the stability and function of microbial communities in host-associated environments." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating Animal 851 QKOC00000000.1 Bac0018752 Parazoarcus communis SWub3 = DSM 12120 strain SWub3 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Parazoarcus Parazoarcus communis 1121029 QKOE00000000.1 Bac0018753 Enterobacter cloacae strain GEO_49_Eff_B "Enterobacter cloacae strain GEO_49_Eff_B is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain, belonging to a species known for its adaptability, has been isolated from multiple habitats, suggesting a versatile ecological presence. The ability to function in varying oxygen conditions may confer a competitive advantage in diverse environments, where oxygen availability fluctuates. ↵↵Enterobacter cloacae is typically associated with a range of environments including soil, water, and the gastrointestinal tracts of animals and humans, indicating its role in various ecological niches. This bacterium's adaptability not only highlights its potential for survival across different habitats but also suggests a capacity for contributing to nutrient cycling in these ecosystems. The facultative anaerobic nature of strain GEO_49_Eff_B may further imply its involvement in microbial communities where it can switch metabolic pathways depending on the prevailing conditions, thus playing a crucial role in maintaining the balance of microbial interactions in its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 QKON00000000.1 Bac0018754 Klebsiella michiganensis strain GEO_33_Up_A "Klebsiella michiganensis strain GEO_33_Up_A is a nonsporulating, Gram-negative rod that thrives optimally at 37°C and utilizes chemoheterotrophic metabolism. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. The versatility in its oxygen requirements suggests adaptability to a variety of habitats, which may contribute to its resilience in diverse ecological niches.↵↵Klebsiella species, including K. michiganensis, are commonly found in environments such as soil, water, and as part of the normal flora in various hosts. The ability of strain GEO_33_Up_A to survive in multiple habitats highlights its potential role in biogeochemical cycles, particularly in nutrient cycling within microbial communities. Its metabolic versatility is indicative of its potential interactions with other microorganisms, which may influence microbial community dynamics and ecosystem functions.↵↵Furthermore, the optimal growth temperature aligns with that of many mesophilic organisms, suggesting that this strain may be well-suited for environments that are conducive to the growth of a wide range of microorganisms, thereby playing a significant role in microbial ecology. This adaptability underscores the importance of K. michiganensis strain GEO_33_Up_A in understanding microbial interactions and contributions to ecosystem health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 QKPB00000000.1 Bac0018755 Klebsiella quasipneumoniae subsp. similipneumoniae strain "Klebsiella quasipneumoniae subsp. similipneumoniae strain is a Gram-negative bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in a variety of host-associated environments. As a member of the Klebsiella genus, this strain is characterized by its ability to survive in the presence or absence of oxygen, which may facilitate its adaptation to different ecological niches within host organisms.↵↵The Gram-negative nature of K. quasipneumoniae subsp. similipneumoniae strain indicates that it possesses a complex cell wall structure, which includes an outer membrane rich in lipopolysaccharides. This structural feature can play a role in interactions with the host immune system, potentially influencing the strain's survival and persistence in host-associated habitats.↵↵While specific pathogenicity and ecological roles of this strain are not detailed, its classification as host-associated suggests a possible relationship with various host organisms, where it may contribute to the microbial community dynamics. Further investigations into its interactions within host environments could provide insights into its ecological significance and potential roles in health and disease. Understanding such dynamics is essential for elucidating the broader implications of this bacterium within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae Negative Facultative anaerobe Mesophilic HostAssociated Free living 1463164 QKPD00000000.1 Bac0018756 Enterobacter cloacae strain GEO_23_Down_A "Enterobacter cloacae strain GEO_23_Down_A is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain, like other members of the Enterobacter genus, is capable of thriving in diverse habitats, suggesting a versatile ecological adaptability. The ability to grow in both aerobic and anaerobic environments underlines its metabolic flexibility, which may play a crucial role in its survival across varied ecological niches.↵↵The facultative anaerobic nature of Enterobacter cloacae strain GEO_23_Down_A allows it to utilize oxygen when available, while also employing fermentation or anaerobic respiration in low-oxygen conditions. This metabolic versatility may contribute to its presence in environments that fluctuate in oxygen availability. ↵↵Moreover, the Gram-negative cell wall structure of this strain is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer resistance to certain antibiotics and environmental stresses. Such traits are common in many Enterobacter species, which are often found in environments ranging from soil and water to the gastrointestinal tracts of mammals.↵↵The ecological implications of Enterobacter cloacae strain GEO_23_Down_A's adaptability suggest it may play a role in nutrient cycling and microbial community dynamics, particularly in environments where oxygen levels are variable. Understanding the ecological roles and interactions of this strain could provide insights into its potential functions in both natural and engineered ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 QKPI00000000.1 Bac0018757 Citrobacter freundii strain GEO_16_Eff_A "Citrobacter freundii strain GEO_16_Eff_A is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain has been isolated from diverse environments, including hospital sewage, intestinal tracts, sewage systems, soil, and surface waters, indicating its adaptability to various ecological niches.↵↵As a facultative anaerobe, Citrobacter freundii strain GEO_16_Eff_A can thrive in both aerobic and anaerobic conditions, allowing it to exploit a range of substrates for growth depending on the availability of oxygen. Its presence in hospital sewage and surface waters suggests it may play a role in nutrient cycling, particularly in environments impacted by human activity. ↵↵The ability of this strain to inhabit complex environments like sewage and soil highlights its potential involvement in biogeochemical processes and its interaction with other microbial communities. Understanding the ecological roles of Citrobacter freundii in such varied habitats could provide insights into microbial dynamics and the impact of anthropogenic influences on microbial diversity and function in aquatic and terrestrial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 QKPL00000000.1 Bac0018758 Acidithiobacillus ferrooxidans strain CCM 4253 "Acidithiobacillus ferrooxidans strain CCM 4253 is a Gram-negative, nonsporulating spirillum that thrives as an obligate chemoautolithotroph, utilizing inorganic compounds as its primary energy source. This strain exhibits optimal growth at a temperature of 30.0°C and requires oxygen for its metabolic processes, categorizing it as an aerobe. ↵↵The specialized habitat of A. ferrooxidans CCM 4253 likely includes environments with high concentrations of iron and sulfur, where it plays a crucial role in biogeochemical cycling by oxidizing ferrous iron and sulfur compounds. This metabolic activity not only supports its growth but also contributes to the transformation of these elements in its ecosystem. ↵↵Understanding the physiological traits of this strain is essential for applications in bioleaching and bioremediation, where its unique energy metabolism can be harnessed for the extraction of metals from ores or the detoxification of contaminated sites. The adaptation of A. ferrooxidans CCM 4253 to its specialized habitat underscores the intricate relationships between microbial life and mineral substrates in extreme environments." Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans Negative Spirilla No 1 2 Aerobe 30 Obligate chemoautolithotroph Mesophilic Specialized Free living Nonsporulating 920 QKQP00000000.1 Bac0018759 Rhodopseudomonas palustris strain XCP Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris 1076 QKQS00000000.1 Bac0018760 Mesonia sp. K7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Mesonia Mesonia sp. K7 2218606 QKQV00000000.1 Bac0018761 Curtobacterium sp. MCSS17_008 SALT8.NODE37 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCSS17_008 2175647 QKSM00000000.1 Bac0018762 Curtobacterium sp. MCSS17_006 SALT6.NODE31 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCSS17_006 2175642 QKSO00000000.1 Bac0018763 Curtobacterium sp. MCLR17_042 GRASS42.NODE37 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_042 2175626 QKTD00000000.1 Bac0018764 Curtobacterium sp. MCLR17_040 GRASS40.NODE39 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. MCLR17_040 2175625 QKTE00000000.1 Bac0018765 Taibaiella soli strain R1-15 "Taibaiella soli strain R1-15 is a Gram-negative, ovoid-shaped bacterium that exhibits aerobic respiration and is non-spore-forming. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderate environmental conditions. The Gram-negative cell wall structure suggests the presence of an outer membrane, which may contribute to its adaptability in diverse environments.↵↵The aerobic nature of Taibaiella soli strain R1-15 implies its reliance on oxygen for metabolic processes, potentially influencing its ecological niche and interactions with other microorganisms. The absence of sporulation indicates that this strain may rely on other survival mechanisms in adverse conditions, such as forming biofilms or utilizing nutrient reserves.↵↵Given its traits, Taibaiella soli strain R1-15 may play a role in various biogeochemical cycles, particularly in soil environments where oxygen availability can fluctuate. Its adaptation to moderate temperatures and aerobic conditions suggests that it could be involved in the decomposition of organic matter, thereby contributing to nutrient cycling and soil health. Further studies could elucidate its specific functions and interactions within its ecological context." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Taibaiella Taibaiella soli Gram-negative ovoid motile aerobic 29 mesophilic non-spore-forming 1649169 QKTW00000000.1 Bac0018766 Metamycoplasma auris strain ATCC 51348 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma auris 51363 QKUB00000000.1 Bac0018767 Thermosporothrix hazakensis strain ATCC BAA-1881 "Thermosporothrix hazakensis strain ATCC BAA-1881 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolism. This strain thrives at an optimal temperature of 45.0°C, indicating its preference for thermophilic environments. The capacity for sporulation suggests a resilience to adverse conditions, allowing it to survive in environments that may be inhospitable to other microorganisms.↵↵As an aerobic organism, T. hazakensis engages in metabolic processes that require oxygen, which aligns with its adaptation to high-temperature niches where oxygen availability can vary. The thermophilic nature of this strain may enable it to inhabit geothermal areas or composting environments where elevated temperatures are common.↵↵Further studies into the ecological roles of T. hazakensis and its interactions with other microbial communities in high-temperature environments could provide insights into its significance in biogeochemical cycles or its potential applications in biotechnology, particularly in processes that require high-temperature conditions. Understanding the specific adaptations of T. hazakensis could also contribute to the broader knowledge of thermophilic microbiota and their evolutionary strategies in extreme habitats." Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Thermosporotrichaceae Thermosporothrix Thermosporothrix hazakensis Gram-positive rod non-motile aerobic 45 thermophilic spore-forming 644383 QKUF00000000.1 Bac0018768 Xylanimonas oleitrophica strain PW21 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Xylanimonas Xylanimonas oleitrophica 2607479 QKWH00000000.1 Bac0018769 Meridianimaribacter sp. CL38 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Meridianimaribacter Meridianimaribacter sp. CL38 2213021 QKWS00000000.1 Bac0018770 Escherichia coli strain EcMLT "Escherichia coli strain EcMLT is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain typically exists as individual cells or in pairs, reflecting its versatile growth patterns. EcMLT is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic conditions, which enhances its adaptability to various host environments. ↵↵The optimal growth temperature for EcMLT is approximately 37.0 °C, aligning with the body temperature of many warm-blooded hosts, which suggests its potential association with mammalian microbiomes. The ability to survive and proliferate under varying oxygen levels further underscores its ecological versatility, allowing it to occupy diverse niches within host-associated habitats.↵↵Given its physiological traits, Escherichia coli strain EcMLT may play a role in the complex interactions within the microbiota of its host, contributing to nutrient metabolism and maintaining microbial balance. Understanding the specific functions and interactions of this strain within its ecological context could provide insights into the broader implications of E. coli in host health and microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QKWZ00000000.1 Bac0018771 Flavobacterium aquariorum strain IMCC34762 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aquariorum 2217670 QKXH00000000.1 Bac0018772 Leifsonia sp. ku-ls Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia sp. ku-ls 2220072 QKXI00000000.1 Bac0018773 Streptacidiphilus pinicola strain MMS16-CNU450 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptacidiphilus Streptacidiphilus pinicola 2219663 QKYN00000000.1 Bac0018774 Pseudomonas sp. URMO17WK12:I2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URMO17WK12:I2 1261623 QKYW00000000.1 Bac0018775 Paraburkholderia tropica strain SIr-6529 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia tropica 92647 QKZC00000000.1 Bac0018776 Pseudomonas sp. 478 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 478 2183930 QKZG00000000.1 Bac0018777 Roseinatronobacter thiooxidans strain DSM 13087 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Roseinatronobacter Roseinatronobacter thiooxidans 121821 QKZQ00000000.1 Bac0018778 Cereibacter changlensis strain DSM 18774 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Cereibacter Cereibacter changlensis 402884 QKZS00000000.1 Bac0018779 Algoriphagus chordae strain DSM 19830 "Algoriphagus chordae strain DSM 19830 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and optimal growth at 25.0°C. This organism is part of the genus Algoriphagus, which is known for its adaptation to marine environments. As a member of the family Flavobacteriaceae, A. chordae contributes to biogeochemical cycles, particularly in aquatic ecosystems.↵↵The Gram-negative nature of A. chordae indicates a complex cell wall structure, which includes an outer membrane containing lipopolysaccharides, contributing to its resilience in various environmental conditions. The aerobic requirement suggests that this bacterium relies on oxygen for its metabolic processes, utilizing aerobic respiration to derive energy, which may influence its distribution in oxygen-rich habitats.↵↵Given its optimal growth temperature of 25.0°C, A. chordae is likely well-suited for temperate marine environments, where water temperatures commonly align with this range. This trait may provide insights into its ecological role, particularly in the degradation of organic matter in cold marine waters, where the metabolic activities of such microorganisms are pivotal for nutrient cycling and maintaining ecosystem health.↵↵Overall, the physiological characteristics of Algoriphagus chordae strain DSM 19830 indicate its potential importance in marine microbiology, particularly in the context of environmental sustainability and nutrient recycling in marine ecosystems." Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus chordae Gram-negative rod non-motile aerobic 25 mesophilic 237019 QKZT00000000.1 Bac0018780 Algoriphagus ratkowskyi strain DSM 22686 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus ratkowskyi 57028 QKZU00000000.1 Bac0018781 Hydrotalea sandarakina strain DSM 23241 "Hydrotalea sandarakina strain DSM 23241 is a rod-shaped, non-spore-forming bacterium that thrives under aerobic conditions and exhibits optimal growth at a temperature of 45.0°C. This thermophilic organism has been isolated in environments characterized by elevated temperatures, which likely influences its metabolic processes and ecological niche. ↵↵The aerobic nature of H. sandarakina suggests its reliance on oxygen for respiration, which may confer advantages in specific habitats where oxygen is readily available. Its inability to form spores indicates a lack of dormancy strategies typically employed by some bacteria to withstand unfavorable conditions, positioning it as a microbe that may be sensitive to environmental fluctuations. ↵↵Given its optimal growth temperature, H. sandarakina may play a role in biogeochemical cycles within high-temperature environments, such as hot springs or thermally impacted soils. Its adaptation to high temperatures and oxygen-rich conditions could facilitate the degradation of organic compounds, contributing to nutrient cycling in these ecosystems. Understanding the functional capabilities of H. sandarakina may provide insights into microbial community dynamics in thermophilic habitats and their potential applications in biotechnology." Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Hydrotalea Hydrotalea sandarakina rod non-motile aerobic 45 thermophilic non-spore-forming 1004304 QKZV00000000.1 Bac0018782 Escherichia coli strain CG1MAC "Escherichia coli strain CG1MAC is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth is observed at 37.0°C, a temperature that aligns with the physiological conditions found within the intestinal tracts of warm-blooded hosts.↵↵The habitat of E. coli strain CG1MAC is host-associated, suggesting a close relationship with its host organisms, which may include humans and other mammals. This association is characteristic of many E. coli strains, which are commonly found in the gastrointestinal tract, where they play roles in digestion and nutrient absorption. ↵↵The facultative anaerobic nature of strain CG1MAC allows it to adapt to varying oxygen levels, contributing to its survival in diverse environments within the host. While the specific ecological roles of this strain remain to be elucidated, its adaptability and association with host organisms suggest a potential involvement in maintaining gut homeostasis. Understanding the traits of E. coli strain CG1MAC may provide insights into its interactions within microbial communities, particularly in relation to nutrient cycling and the competitive dynamics of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QLAC00000000.1 Bac0018783 Burkholderia multivorans strain Bmul_CF170.10a "Burkholderia multivorans strain Bmul_CF170.10a is a Gram-negative, nonsporulating rod-shaped bacterium that is associated with host environments and exhibits aerobic metabolic requirements. As a member of the Burkholderia genus, this strain is characterized by its ability to thrive in oxygen-rich conditions, which suggests an adaptation to environments where oxygen is readily available, such as within specific host tissues or fluids. The nonsporulating nature of Bmul_CF170.10a indicates that it relies on other means of survival and proliferation, as it does not form spores to withstand adverse conditions.↵↵The host-associated habitat of this strain implies a potential role in the microbiota of its host, which may contribute to various biological interactions, such as nutrient cycling or host immune modulation. The specific ecological niche occupied by Bmul_CF170.10a remains to be fully elucidated, but its aerobic lifestyle may influence its interactions with other microbial communities within the host. Understanding the ecological role of Burkholderia multivorans strain Bmul_CF170.10a could provide insights into its functional contributions to host health and disease, particularly in relation to its metabolic capabilities and interactions with the host immune system. This emphasizes the importance of studying host-associated bacteria to uncover their potential roles in maintaining homeostasis within their environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia multivorans Negative Rod Yes 1 2 Aerobe Mesophilic HostAssociated Free living Nonsporulating 87883 QLBB00000000.1 Bac0018784 Rhodobacteraceae bacterium AsT-22 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium AsT-22 2230886 QLIW00000000.1 Bac0018785 Sphingomonas sp. S-NIH.Pt3_0716 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. S-NIH.Pt3_0716 1920124 QLJK00000000.1 Bac0018786 Olleya aquimaris strain DSM 24464 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Olleya Olleya aquimaris 639310 QLLO00000000.1 Bac0018787 Pedobacter cryoconitis strain DSM 14825 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter cryoconitis 188932 QLLR00000000.1 Bac0018788 Streptomyces sp. DpondAA-E10 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DpondAA-E10 1305832 QLLS00000000.1 Bac0018789 Kitasatospora sp. SolWspMP-SS2h Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. SolWspMP-SS2h 1305729 QLLT00000000.1 Bac0018790 Streptomyces sp. PsTaAH-130 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PsTaAH-130 1305828 QLLW00000000.1 Bac0018791 Streptomyces sp. Amel2xB2 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Amel2xB2 1305829 QLLX00000000.1 Bac0018792 Streptomyces sp. PsTaAH-137 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PsTaAH-137 1305830 QLLY00000000.1 Bac0018793 Larkinella arboricola strain DSM 21851 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Larkinella Larkinella arboricola 643671 QLMC00000000.1 Bac0018794 Aliidiomarina maris strain CGMCC 1.15366 "Aliidiomarina maris strain CGMCC 1.15366 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 32.0 °C. This strain is non-spore-forming, which indicates reliance on vegetative growth for survival and reproduction under suitable environmental conditions.↵↵The Gram-negative nature of A. maris suggests a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. These structural features may contribute to its adaptability in various aquatic environments, potentially influencing its interactions with other microorganisms and organic substrates.↵↵A significant aspect of A. maris is its adaptation to specific thermal regimes, particularly its optimal growth at 32.0 °C, which reflects its potential isolation from temperate marine ecosystems. This temperature preference may limit its distribution to environments where such conditions are prevalent, potentially influencing its ecological niche.↵↵The absence of sporulation in A. maris indicates a strategy that may be advantageous in stable environments where nutrient availability is consistent. This trait may also imply a dependence on regular exposure to oxygen, thereby positioning the strain within aerobic ecosystems where it can utilize organic matter effectively.↵↵In summary, Aliidiomarina maris strain CGMCC 1.15366 exemplifies a specialized aerobic bacterium that is well-adapted to specific marine environments, potentially playing a role in nutrient cycling and organic matter degradation within its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Aliidiomarina Aliidiomarina maris Gram-negative rod aerobic 32 mesophilic non-spore-forming 531312 QLMD00000000.1 Bac0018795 Salipiger aestuarii strain DSM 22011 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Salipiger Salipiger aestuarii 568098 QLMG00000000.1 Bac0018796 Actinoplanes lutulentus strain CGMCC 4.7090 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes lutulentus 1287878 QLMJ00000000.1 Bac0018797 Falsochrobactrum ovis strain DSM 26720 "Falsochrobactrum ovis strain DSM 26720 is a Gram-negative, aerobic rod-shaped bacterium characterized by its non-spore-forming nature. This strain, belonging to the genus Falsochrobactrum, exhibits typical features associated with aerobic bacteria, such as the requirement for oxygen in its metabolic processes. The rod shape of F. ovis suggests a potential adaptability to various environments where it can efficiently utilize available nutrients.↵↵As a member of the diverse microbial community, F. ovis may play a role in nutrient cycling and organic matter degradation, contributing to soil health and ecosystem functioning. The aerobic nature of this bacterium positions it to thrive in oxygen-rich environments, which may include soil layers, plant rhizospheres, or aquatic systems where oxygen diffusion occurs. Understanding the ecological role of F. ovis could provide insights into its interactions within microbial communities, particularly in relation to its potential contributions to biogeochemical cycles and plant health.↵↵Further exploration of Falsochrobactrum ovis strain DSM 26720 may reveal its interactions with other microbial species and its role in maintaining ecosystem stability, highlighting the importance of aerobic microorganisms in diverse habitats." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Falsochrobactrum Falsochrobactrum ovis Gram-negative rod non-motile aerobic non-spore-forming 1293442 QLMK00000000.1 Bac0018798 Agrobacterium sp. MS2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium sp. MS2 1345498 QLNF00000000.1 Bac0018799 Desulfobacter hydrogenophilus strain DSM 3380 Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter Desulfobacter hydrogenophilus anaerobic 2291 QLNI00000000.1 Bac0018800 Arthrobacter globiformis strain mrc11 344 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter globiformis Nonsporulating 1665 QLNP00000000.1 Bac0018801 Paraburkholderia unamae strain CATux-332 "Paraburkholderia unamae strain CATux-332 is a Gram-negative, rod-shaped bacterium known for its ability to form spores. This microbial strain belongs to the genus Paraburkholderia, which is characterized by its diverse metabolic capabilities and adaptations to various environments. The Gram-negative nature of strain CATux-332 suggests that it possesses a thin peptidoglycan layer, which is characteristic of its cell wall structure, along with an outer membrane that may contain lipopolysaccharides. ↵↵The spore-forming ability of Paraburkholderia unamae strain CATux-332 is particularly noteworthy, as it indicates that this strain can endure unfavorable conditions, potentially providing it with a survival advantage in fluctuating environments. Sporulation is a critical biological process that allows microorganisms to withstand extreme temperatures, desiccation, and nutrient deprivation, thereby contributing to their resilience and distribution in ecological niches.↵↵Given these traits, Paraburkholderia unamae strain CATux-332 may play a significant role in biogeochemical cycles, particularly in soil environments where its spore-forming capability enhances its persistence. This suggests potential applications in bioremediation or soil health management, wherein the strain could contribute to nutrient cycling and the degradation of organic materials. Further research into its metabolic pathways and ecological interactions could yield insights into the functional roles of this bacterium in its native habitat." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia unamae Gram-negative rod spore-forming 219649 QLSU00000000.1 Bac0018802 Flavobacterium lacus strain CGMCC 1.12504 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium lacus 1353778 QLSV00000000.1 Bac0018803 Flavobacterium aciduliphilum strain DSM 25663 "Flavobacterium aciduliphilum strain DSM 25663 is a Gram-negative, rod-shaped bacterium that thrives in aerobic conditions, with an optimal growth temperature of 25.0°C. As a member of the genus Flavobacterium, this strain is characterized by its distinctive morphological and physiological traits, which are typical of many environmental bacteria within this group.↵↵The Gram-negative nature of F. aciduliphilum indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this classification and influences its interaction with the environment. The rod shape of the bacterium is commonly associated with motility and adaptability in various ecological niches, potentially contributing to its survival and functional roles in microbial communities.↵↵The optimal growth temperature of 25.0°C suggests that F. aciduliphilum is well-suited for moderate climates, indicating its potential prevalence in environments that maintain such temperatures, including soil and aquatic systems. Its aerobic requirement emphasizes the necessity for oxygen in its metabolic processes, aligning with its role in nutrient cycling and decomposition in various ecosystems.↵↵Overall, the traits of Flavobacterium aciduliphilum strain DSM 25663 highlight its potential contributions to biogeochemical processes, particularly in aerobic environments where organic matter is broken down, thus playing a significant role in maintaining ecosystem health and resilience." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium aciduliphilum Gram-negative rod non-motile aerobic 25 mesophilic 1101402 QLSZ00000000.1 Bac0018804 Microvirgula sp. AG722 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Aquaspirillaceae Microvirgula Microvirgula sp. AG722 2183901 QLTJ00000000.1 Bac0018805 Paraburkholderia bryophila strain LMG 23644 "Paraburkholderia bryophila strain LMG 23644 is a Gram-negative, non-spore-forming bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0°C. This strain is distinguished by its metabolic capabilities, which are adapted to a variety of environments, although specific ecological niches have not been explicitly defined in the available data.↵↵As a member of the Burkholderia genus, Paraburkholderia bryophila may play a role in various biogeochemical cycles, particularly in soil ecosystems where aerobic bacteria contribute to organic matter decomposition and nutrient cycling. The aerobic nature of this strain suggests it may be involved in processes such as nitrification or the degradation of organic pollutants, although further research would be necessary to elucidate its specific ecological functions.↵↵The lack of sporulation indicates that this strain may be less resilient to extreme environmental stresses compared to spore-forming bacteria, which could influence its survival strategies and ecological interactions. Understanding the traits of Paraburkholderia bryophila strain LMG 23644 can provide insights into its role within microbial communities and its potential applications in bioremediation or agriculture, given its aerobic metabolism and adaptability to moderate temperatures." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia bryophila Gram-negative non-motile aerobic 29 mesophilic non-spore-forming 420952 QLTK00000000.1 Bac0018806 Pseudomonas sp. URMO17WK12:I7 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URMO17WK12:I7 1283290 QLTL00000000.1 Bac0018807 Streptomyces avidinii strain CG 885 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces avidinii aerobic 29 mesophilic spore-forming 1895 QLTM00000000.1 Bac0018808 Paenibacillus sp. MDMC362 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. MDMC362 2977365 QLYT00000000.1 Bac0018809 Pseudomonas sp. MDMC224 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. MDMC224 2218663 QLYU00000000.1 Bac0018810 Planococcus halotolerans strain SCU63 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus halotolerans 2233542 QLZR00000000.1 Bac0018811 Acinetobacter sp. SM1B Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. SM1B 1497337 QMBM00000000.1 Bac0018812 Enterobacter kobei strain 131G4 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter kobei 208224 QMCU00000000.1 Bac0018813 Enterobacter cloacae strain 99B3 "Enterobacter cloacae strain 99B3 is a Gram-negative, rod-shaped bacterium classified within the Enterobacter genus. This strain exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. The versatility in oxygen utilization contributes to its adaptability across various habitats, which are characterized as multiple and diverse. ↵↵Enterobacter cloacae species, including strain 99B3, are often found in soil, water, and as part of the normal flora in the gastrointestinal tracts of humans and animals, suggesting a broad ecological niche. The ability to inhabit such varied environments underscores the organism's potential role in nutrient cycling and its interactions with other microbial communities.↵↵This strain's facultative anaerobic metabolism may also provide insights into its survival strategies under fluctuating environmental conditions, where oxygen availability may vary. Such adaptability is critical for its persistence in complex ecosystems, where it may contribute to the microbial diversity and functional capabilities of the microbiome. Understanding the ecological roles of Enterobacter cloacae strain 99B3 can further illuminate its interactions within its habitats, particularly in the context of nutrient processing and potential biotechnological applications." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 QMDH00000000.1 Bac0018814 Marinobacter litoralis strain Sw-45 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter litoralis 187981 QMDL00000000.1 Bac0018815 Halonotius pteroides strain CECT 7525 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius pteroides 268735 QMDW00000000.1 Bac0018816 Mycobacterium colombiense strain GF76 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium colombiense 339268 QMEU00000000.1 Bac0018817 Mycolicibacterium sp. GF69 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sp. GF69 2267251 QMEW00000000.1 Bac0018818 Spongiactinospora rosea strain LHW63015 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Spongiactinospora Spongiactinospora rosea 2248750 QMEY00000000.1 Bac0018819 Micromonospora sp. LHW51205 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. LHW51205 2248752 QMEZ00000000.1 Bac0018820 Paenibacillus sp. YN15 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. YN15 1742774 QMFA00000000.1 Bac0018821 Paenibacillus contaminans strain CKOBP-6 "Paenibacillus contaminans strain CKOBP-6 is a rod-shaped, spore-forming bacterium characterized by its ability to exhibit both Gram-positive and Gram-negative staining properties. This dual Gram reaction may suggest a complex cell wall structure or varying states of the organism under different environmental conditions. The strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderate thermal conditions typically encountered in various natural environments.↵↵As an aerobic organism, Paenibacillus contaminans strain CKOBP-6 relies on oxygen for its metabolic processes; however, it also possesses facultative anaerobic capabilities, allowing it to adapt to fluctuating oxygen levels. This versatility may enable the strain to colonize diverse ecological niches, potentially contributing to its resilience in varying habitats.↵↵The spore-forming ability of this strain is particularly noteworthy, as it suggests a survival mechanism that allows the organism to endure unfavorable conditions, such as nutrient limitation or desiccation. This trait not only facilitates its persistence in the environment but may also play a role in its interactions with other microorganisms and its ecological impact.↵↵Overall, the adaptability of Paenibacillus contaminans strain CKOBP-6 to different oxygen levels and its capacity for spore formation highlight its potential significance in microbial communities, where it may participate in nutrient cycling or soil health, thereby influencing ecosystem dynamics." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus contaminans Gram-negative / Gram-positive rod aerobic / facultative aerobe/anaerobe 29 mesophilic spore-forming 450362 QMFB00000000.1 Bac0018822 Staphylococcus warneri strain HPCN32 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus warneri 1292 QMFT00000000.1 Bac0018823 Burkholderia reimsis strain BE51 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia reimsis 2234132 QMFZ00000000.1 Bac0018824 Aggregatibacter aphrophilus strain HK83 "Aggregatibacter aphrophilus strain HK83 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic. This strain is primarily host-associated, indicating a close relationship with its host organisms, which can influence its metabolic activities and ecological interactions. ↵↵As a member of the Aggregatibacter genus, A. aphrophilus is notable for its adaptability to various oxygen conditions, allowing it to thrive in both aerobic and anaerobic environments. This facultative nature contributes to its survival strategies within host-associated habitats, where fluctuating oxygen levels may occur. ↵↵The Gram-negative cell wall structure of A. aphrophilus strain HK83 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interactions with the host's immune system. Understanding the specific ecological niches occupied by this strain could provide insights into its role in the microbiome of its host, potentially influencing host health and microbial community dynamics. ↵↵The ability of A. aphrophilus strain HK83 to adapt to the varying conditions within host environments highlights the complexity of microbial life in symbiotic relationships, suggesting potential avenues for further research into its role in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Aggregatibacter Aggregatibacter aphrophilus Negative Rod No 1 2 Facultative Mesophilic HostAssociated Free living Human 732 QMGS00000000.1 Bac0018825 Aerococcus urinae strain UMB0574 "Aerococcus urinae strain UMB0574 is a Gram-positive coccus that exhibits a microaerophilic growth requirement, indicating its preference for environments with lower oxygen levels than those present in the atmosphere. This strain has been identified in various habitats, including air, medical environments, soil, and urine, suggesting its adaptability to diverse ecological niches. ↵↵The coccoid morphology of A. urinae allows it to thrive in environments where it may form clusters, which can be significant for its survival and interaction with other microorganisms. The presence of this strain in both medical and environmental settings highlights its potential role in the microbiome of the urinary tract as well as its ability to persist in soil and atmospheric conditions, possibly contributing to nutrient cycling or microbial dynamics in these ecosystems.↵↵Furthermore, its isolation from urine indicates a potential relationship with urinary health, although caution should be exercised in interpreting its presence without further context regarding its role. The ability of A. urinae strain UMB0574 to inhabit such varied environments emphasizes the ecological versatility of this species and its potential implications for understanding microbial communities in both clinical and natural settings." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus urinae positive Cocci microaerophilic air; medical environment; soil; urine 1376 QMGZ00000000.2 Bac0018826 Aerococcus urinae strain UMB0621 "Aerococcus urinae strain UMB0621 is a Gram-positive coccus that exhibits a microaerophilic oxygen requirement and can be found in diverse habitats, including air, medical environments, soil, and urine. This strain's spherical morphology is characteristic of the genus Aerococcus, which is known for its distinctive cellular arrangements. The microaerophilic nature of A. urinae suggests that it thrives in environments with reduced oxygen levels, potentially influencing its distribution in both natural and clinical settings. ↵↵The ability of A. urinae strain UMB0621 to inhabit human-associated environments, such as urine, indicates its potential relevance in urological studies or as a component of the urinary microbiome. Furthermore, its presence in soil and air suggests a broader ecological niche, which may facilitate interactions with other microorganisms or contribute to biogeochemical cycles. Understanding the ecological roles and interactions of A. urinae strain UMB0621 could provide insights into its significance in both health and environmental contexts, particularly as research continues to uncover the complexities of microbial communities in varied habitats." Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus urinae positive Cocci microaerophilic air; medical environment; soil; urine 1376 QMHA00000000.1 Bac0018827 Aerococcus loyolae strain UMB5628 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus loyolae 2976809 QMHJ00000000.1 Bac0018828 Phytoactinopolyspora halophila strain YIM 96934 Bacillati Actinomycetota Actinomycetes Jiangellales Jiangellaceae Phytoactinopolyspora Phytoactinopolyspora halophila 1981511 QMIG00000000.1 Bac0018829 Actinomyces sp. Z5 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. Z5 2250216 QMIN00000000.1 Bac0018830 Leuconostoc pseudomesenteroides strain KMB_610 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc pseudomesenteroides 33968 QMJJ00000000.1 Bac0018831 Arthrobacter sp. AQ5-06 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. AQ5-06 1914304 QMKP00000000.1 Bac0018832 Candidatus Methanomethylicota archaeon Thermoproteati Thermoproteota Thermoproteota archaeon 2056631 QMQV00000000.1 Bac0018833 Thermococci archaeon Methanobacteriati Methanobacteriota Thermococci Thermococci archaeon 2250254 QMUO00000000.1 Bac0018834 Methanosarcinales archaeon Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinales archaeon 2250255 QMVN00000000.1 Bac0018835 Hadesarchaea archaeon Methanobacteriati Candidatus Hadarchaeota Candidatus Hadarchaeia Hadesarchaea archaeon 2250276 QMWE00000000.1 Bac0018836 Candidatus Asgardarchaeum californiense Promethearchaeati Candidatus Asgardarchaeia (ex Tamarit et al. 2024) Candidatus Asgardarchaeales (ex Tamarit et al. 2024) Candidatus Asgardarchaeaceae Candidatus Asgardarchaeum (ex Tamarit et al. 2024) Candidatus Asgardarchaeum californiense 3067292 QMYV00000000.1 Bac0018837 Candidatus Gerdarchaeota archaeon Promethearchaeati Candidatus Gerdarchaeota Candidatus Gerdarchaeota archaeon 2795491 QMYX00000000.1 Bac0018838 Archaeoglobales archaeon Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobales archaeon 2250258 QMZA00000000.1 Bac0018839 Candidatus Altiarchaeales archaeon Nanobdellati Candidatus Altarchaeota Candidatus Altarchaeia Candidatus Altarchaeales Candidatus Altarchaeales archaeon 2250256 QMZL00000000.1 Bac0018840 Thermotogota bacterium Thermotogati Thermotogota Thermotogota bacterium 3701362 QNAP00000000.1 Bac0018841 Spirochaetota bacterium Pseudomonadati Spirochaetota Spirochaetota bacterium 2202144 QNBH00000000.1 Bac0018842 Candidatus Parabeggiatoa sp. nov. 2 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Candidatus Parabeggiatoa Candidatus Parabeggiatoa sp. nov. 2 1972449 QNEN00000000.1 Bac0018843 Halophilic archaeon strain H22 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales halophilic archaeon 29295 QNGA00000000.1 Bac0018844 Roseovarius sp. TE539 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius sp. TE539 2249812 QNGB00000000.1 Bac0018845 Nocardia puris strain DSM 44599 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia puris aerobic 29 mesophilic 208602 QNRE00000000.1 Bac0018846 Marinomonas aquiplantarum strain CECT 7732 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas aquiplantarum 491951 QNRF00000000.1 Bac0018847 Roseiarcus fermentans strain DSM 24875 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Roseiarcaceae Roseiarcus Roseiarcus fermentans 1473586 QNRK00000000.1 Bac0018848 Pseudocitrobacter faecalis strain DSM 27453 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pseudocitrobacter Pseudocitrobacter faecalis 1398493 QNRL00000000.1 Bac0018849 Achromobacter marplatensis strain CECT 7342 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter marplatensis 470868 QNRM00000000.1 Bac0018850 Marinobacter pelagius strain 114J Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter pelagius 379482 QNRO00000000.1 Bac0018851 Eoetvoesiella caeni strain DSM 25520 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Eoetvoesiella Eoetvoesiella caeni 645616 QNRQ00000000.1 Bac0018852 Roseimicrobium gellanilyticum strain DSM 25532 "Roseimicrobium gellanilyticum strain DSM 25532 is a Gram-negative, ovoid-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This microbe belongs to a genus characterized by its ability to degrade gellan, a polysaccharide commonly used as a gelling agent in food and microbiological media. The Gram-negative nature of R. gellanilyticum indicates that it possesses a complex cell wall structure, composed of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵The optimal growth temperature of 29.0°C suggests that this strain is well-suited for environments that are slightly cooler than typical human body temperature, potentially indicating its natural habitat in temperate aquatic systems or soil environments where organic matter decomposition occurs. As an aerobic organism, R. gellanilyticum relies on oxygen for its metabolic processes, which may facilitate its role in nutrient cycling and the breakdown of organic polymers in its ecosystem.↵↵The ability of R. gellanilyticum to degrade gellan may have significant implications for biotechnological applications, particularly in the bioremediation of environments contaminated with polysaccharides. This trait not only highlights its potential utility in waste management but also underscores the importance of microbial communities in maintaining ecological balance through the decomposition of complex organic materials." Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium gellanilyticum Gram-negative ovoid non-motile aerobic 29 mesophilic 748857 QNRR00000000.1 Bac0018853 Arenicella xantha strain DSM 24032 "Arenicella xantha strain DSM 24032 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and exhibits strict aerobic respiration. This organism is notable for its adaptation to aerobic environments, which may influence its metabolic pathways and ecological roles in various habitats. ↵↵The Gram-negative nature of A. xantha suggests the presence of a characteristic outer membrane, which may confer advantages in terms of resilience against certain environmental stressors, including antimicrobial agents. The rod morphology is common among many bacterial taxa and may facilitate motility and nutrient uptake in its preferred environments. ↵↵The optimal growth temperature of 25.0°C indicates that A. xantha is likely adapted to moderate thermal conditions, potentially thriving in environments such as soil or aquatic systems where temperatures fluctuate within this range. Such conditions may promote interactions with other microbial communities, contributing to the cycling of nutrients and organic matter.↵↵Given its aerobic nature, Arenicella xantha may play a significant role in the degradation of organic compounds in oxygen-rich environments, thereby influencing biogeochemical processes. This trait highlights its potential importance in ecosystem functioning, particularly in the context of carbon cycling and organic matter decomposition. Further investigations into this strain could yield insights into its specific metabolic capabilities and ecological interactions within its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Arenicellales Arenicellaceae Arenicella Arenicella xantha Gram-negative rod non-motile aerobic 25 mesophilic 644221 QNRT00000000.1 Bac0018854 Shewanella putrefaciens strain 97 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens 24 QNSC00000000.1 Bac0018855 Rhodosalinus halophilus strain E84 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodosalinus Rhodosalinus halophilus 2259333 QNTQ00000000.1 Bac0018856 Stutzerimonas zhaodongensis strain SST2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas zhaodongensis 1176257 QNTV00000000.1 Bac0018857 Elizabethkingia miricola strain 6012926 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Elizabethkingia Elizabethkingia miricola 172045 QNTX00000000.1 Bac0018858 Chryseobacterium rhizosphaerae strain KCTC 22548 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium rhizosphaerae 395937 QNUF00000000.1 Bac0018859 Epilithonimonas hispanica strain KCTC 22104 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas hispanica 358687 QNUG00000000.1 Bac0018860 Dyadobacter luteus strain RS19 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter luteus 2259619 QNUL00000000.1 Bac0018861 Flavobacterium petrolei strain Kopri-42 22 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium petrolei 2259594 QNVY00000000.2 Bac0018862 Aquifex sp. Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Aquifex Aquifex sp. 313370 QNXQ00000000.1 Bac0018863 Flavobacteriia bacterium Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriia bacterium 2044941 QNYM00000000.1 Bac0018864 Methylococcus sp. Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylococcus Methylococcus sp. 39769 QNYV00000000.1 Bac0018865 Vibrionales bacterium C3R12 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionales bacterium C3R12 2267228 QOCD00000000.1 Bac0018866 Phaeobacter gallaeciensis strain C3M10 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Phaeobacter Phaeobacter gallaeciensis 60890 QOCE00000000.1 Bac0018867 Ruegeria sp. A3M17 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Ruegeria Ruegeria sp. A3M17 2267229 QOCF00000000.1 Bac0018868 Lactobacillus bombicola strain BI-4G Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus bombicola 1505723 QOCU00000000.1 Bac0018869 Lactobacillus bombicola strain OCC3 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus bombicola 1505723 QOCV00000000.1 Bac0018870 Escherichia coli strain AVC251 "Escherichia coli strain AVC251 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, AVC251 can grow in both the presence and absence of oxygen, demonstrating metabolic versatility that allows it to occupy diverse ecological niches within the host environment.↵↵The rod shape and cell arrangement of AVC251 may contribute to its ability to colonize and persist in various microenvironments within the host. The facultative anaerobic nature of this strain suggests that it may play a role in the microbial community dynamics within the gastrointestinal tract, where fluctuating oxygen levels can occur. Furthermore, the ability to thrive at physiological temperatures may reflect its evolutionary adaptations for survival and proliferation in host-associated habitats. ↵↵Understanding the specific traits of Escherichia coli strain AVC251 could provide insights into its ecological roles and interactions within the microbiome of its host, potentially influencing nutrient cycling and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QOEN00000000.1 Bac0018871 Escherichia coli strain AVC154 "Escherichia coli strain AVC154 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain AVC154 can grow in both aerobic and anaerobic environments, allowing it to exploit a diverse range of ecological niches within its host. ↵↵The ability to adapt to different oxygen conditions may enhance its survival in varying microenvironments within the host, where oxygen levels can fluctuate significantly. This trait is noteworthy as it enables the strain to engage in various metabolic pathways, potentially influencing its interactions with the host's microbiome and immune system. The dual capability of aerobic respiration and fermentation also suggests that E. coli strain AVC154 may play a versatile role in nutrient cycling within its habitat, contributing to the overall metabolic dynamics of the host-associated microbial community. Further exploration of this strain could provide insights into its ecological roles and interactions in host environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QOGI00000000.1 Bac0018872 Blastococcus sp. TF02A-26 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. TF02A-26 2250577 QOHG00000000.1 Bac0018873 Blastococcus sp. TF02-09 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. TF02-09 2250576 QOHH00000000.1 Bac0018874 Blastococcus sp. TBT05-19 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. TBT05-19 2250581 QOHI00000000.1 Bac0018875 Blastococcus sp. TF02A-30 Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Blastococcus Blastococcus sp. TF02A-30 2250580 QOHJ00000000.1 Bac0018876 Sphaerisporangium album strain CCTCC AA 208026 "Sphaerisporangium album strain CCTCC AA 208026 is a Gram-positive, aerobic bacterium characterized by its ability to form spores, which contributes to its resilience in various environmental conditions. This strain thrives optimally at a temperature of 29.0 °C, suggesting a preference for mesophilic environments typically found in soil and decaying organic matter. The spore-forming capability of S. album indicates potential adaptations for survival in fluctuating conditions, allowing it to withstand periods of nutrient scarcity or environmental stress.↵↵The aerobic nature of this strain implies that it relies on oxygen for its metabolic processes, which may influence its habitat selection and interactions with other microbial communities. As a member of the genus Sphaerisporangium, this strain likely plays a role in nutrient cycling within its ecosystem, potentially aiding in the decomposition of organic materials. The sporulation ability not only helps in survival but may also facilitate the dispersal of the organism across different environments.↵↵The unique combination of traits exhibited by Sphaerisporangium album strain CCTCC AA 208026 underscores its potential as an important player in soil microbiomes, where its aerobic metabolism and sporulation strategies could contribute to the breakdown of complex organic compounds and support overall ecosystem health." Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Sphaerisporangium Sphaerisporangium album Gram-positive aerobic 29 mesophilic spore-forming 509200 QOIL00000000.1 Bac0018877 Streptomyces reniochalinae strain LHW50302 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces reniochalinae 2250578 QOIM00000000.1 Bac0018878 Paracoccus alkanivorans strain 4-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus alkanivorans 2116655 QOKZ00000000.1 Bac0018879 Escherichia marmotae strain SC344 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia marmotae 1499973 QONO00000000.1 Bac0018880 PS1 clade bacterium Pseudomonadati Pseudomonadota Alphaproteobacteria PS1 clade bacterium 2175152 QOQD00000000.1 Bac0018881 Candidatus Ozemobacter sibiricus Candidatus Rifleibacteriota Candidatus Ozemibacteria Candidatus Ozemibacteraceae Candidatus Ozemibacter Candidatus Ozemibacter sibiricus 2268124 QOQW00000000.1 Bac0018882 Pseudomonas aeruginosa strain B2-305 "Pseudomonas aeruginosa strain B2-305 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits heterotrophic metabolism, relying on organic compounds as its energy source. P. aeruginosa strain B2-305 thrives optimally at a temperature of 25.0°C and is classified as an aerobe, indicating its requirement for oxygen for growth and metabolism.↵↵The versatility of Pseudomonas aeruginosa as a genus is reflected in the strain's ability to inhabit multiple environments, suggesting a broad ecological adaptability. This adaptability is likely linked to its metabolic capabilities, allowing it to utilize a diverse range of organic substrates. The aerobic nature of P. aeruginosa strain B2-305 may facilitate its survival in oxygen-rich environments, contributing to its prevalence in various habitats, including soil and water.↵↵Given its physiological traits, Pseudomonas aeruginosa strain B2-305 may play a role in nutrient cycling within its ecosystem, particularly in the degradation of organic matter. This capacity underscores the significance of this strain within the microbial community, as it may influence the dynamics of nutrient availability and contribute to the overall health of its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 QORE00000000.1 Bac0018883 Microbacterium sorbitolivorans strain CGMCC 1.15228 "Microbacterium sorbitolivorans strain CGMCC 1.15228 is a Gram-positive, rod-shaped bacterium characterized as a facultative aerobe/anaerobe, with an optimal growth temperature of 29.0°C. As a member of the genus Microbacterium, this strain exhibits key physiological traits that allow it to thrive in varying oxygen conditions, suggesting a versatile metabolic capacity. The ability to grow under both aerobic and anaerobic environments may enable M. sorbitolivorans to adapt to diverse ecological niches, potentially contributing to biogeochemical processes.↵↵The Gram-positive nature of this bacterium indicates a thick peptidoglycan layer in its cell wall, which could play a role in its resilience to environmental stressors. The preferred temperature of 29.0°C aligns with conditions often found in temperate environments, suggesting that M. sorbitolivorans may be well-suited for habitats that experience moderate thermal conditions.↵↵Given its physiological traits, Microbacterium sorbitolivorans strain CGMCC 1.15228 may serve as an important player in the decomposition of organic matter, particularly in environments rich in sorbitol or similar compounds. Its metabolic versatility could facilitate the breakdown of complex carbohydrates, thus contributing to nutrient cycling in various ecosystems. Further studies could elucidate its specific roles in microbial communities and its potential applications in biotechnology or environmental management." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sorbitolivorans Gram-positive rod non-motile facultative aerobe/anaerobe 29 mesophilic 1867410 QORO00000000.1 Bac0018884 Desertihabitans brevis strain 16Sb5-5 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Desertihabitans Desertihabitans brevis 2268447 QOUI00000000.1 Bac0018885 Eubacteriaceae bacterium Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacteriaceae bacterium 2049045 QOUT00000000.1 Bac0018886 Vibrio harveyi strain CAIM 1508 CAIM1508_a5_402 "Vibrio harveyi strain CAIM 1508 (CAIM1508_a5_402) is a Gram-negative bacterium predominantly found in marine environments, particularly within the aquaculture sector of the Changjiang estuary. This strain is part of the Vibrio genus, which is known for its diverse ecological roles in marine ecosystems. ↵↵Vibrio harveyi strains are typically associated with warm coastal waters and play significant roles in the nutrient cycling processes within these habitats. As a member of the Vibrionaceae family, CAIM 1508 may contribute to the dynamics of microbial communities in aquaculture settings, influencing both the health of cultured species and the overall environmental balance. The presence of this strain in the Changjiang estuary highlights its potential involvement in local aquatic food webs and its adaptation to estuarine conditions, which can vary significantly in terms of salinity and nutrient availability.↵↵Given its habitat within aquaculture, Vibrio harveyi strain CAIM 1508 may also engage in complex interactions with other microbial species and aquatic organisms, suggesting a role in both symbiotic and competitive relationships. This underscores the need for further research into its ecological contributions, particularly in relation to aquaculture productivity and sustainability in the Changjiang estuary." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio harveyi negative aquaculture; Changjiang estuary; Marine 669 QOUW00000000.2 Bac0018887 Leeuwenhoekiella marinoflava strain LMG 1345 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella marinoflava 988 QOVL00000000.1 Bac0018888 Leeuwenhoekiella aequorea strain LMG 22550 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Leeuwenhoekiella Leeuwenhoekiella aequorea 283736 QOVM00000000.1 Bac0018889 Chryseobacterium sp. SC28 SC28_48 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. SC28 2268028 QOVY00000000.1 Bac0018890 Larkinella punicea strain ZZJ9 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Larkinella Larkinella punicea 2315727 QOWE00000000.1 Bac0018891 Phyllobacterium salinisoli strain LLAN61 ZB100187 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium salinisoli 1899321 QOZG00000000.1 Bac0018892 Acidovorax sp. BoFeN1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. BoFeN1 1231053 QOZT00000000.1 Bac0018893 Stenotrophomonas sp. ATCM1_4 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. ATCM1_4 2259330 QPFB00000000.1 Bac0018894 Brevibacterium aurantiacum strain 876_7 SAMN07141152.163 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium aurantiacum 273384 QPGD00000000.1 Bac0018895 Vibrio casei strain JB196 SAMN07141174.130 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio casei 673372 QPGL00000000.1 Bac0018896 Microbacterium sp. JB110 SAMN07141168.134 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. JB110 2024477 QPGM00000000.1 Bac0018897 Campylobacter novaezeelandiae strain B423b Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter novaezeelandiae 2267891 QPGR00000000.1 Bac0018898 Winogradskyella sp. KYW1333 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella sp. KYW1333 2282123 QPHL00000000.1 Bac0018899 Haloplanus salinus strain JCM 18368 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus salinus 1126245 QPHM00000000.1 Bac0018900 Chryseobacterium lacus strain YLOS41 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium lacus 2058346 QPIE00000000.1 Bac0018901 Wolbachia endosymbiont of Cylisticus convexus strain Wcon Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Cylisticus convexus 118728 QPIP00000000.1 Bac0018902 Runella aurantiaca strain YX9 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Runella Runella aurantiaca 2282308 QPIW00000000.1 Bac0018903 Ciceribacter lividus strain DSM 25528 "Ciceribacter lividus strain DSM 25528 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 29.0°C. This strain is characterized by its distinctive morphology and metabolic requirements, positioning it within the broader context of microorganisms adapted to specific environmental conditions. As a member of the genus Ciceribacter, it is likely involved in complex interactions within its ecological niche, although specific ecological roles are not detailed in the provided traits.↵↵The Gram-negative cell wall structure of Ciceribacter lividus suggests a potential resilience to certain environmental stresses, which may influence its survival and competitiveness in diverse habitats. Aerobic organisms like this strain typically require oxygen for their metabolic processes, indicating that it may inhabit environments where oxygen is readily available, such as soil or aquatic systems.↵↵The optimal growth temperature of 29.0°C can be indicative of its adaptation to moderate temperature ranges, which may be relevant to its ecological distribution. Understanding the growth conditions and metabolic characteristics of Ciceribacter lividus strain DSM 25528 could provide insights into its potential roles in nutrient cycling or its interactions with other microbial communities in its habitat. Further investigation into its ecological functions could reveal important contributions to microbial diversity and ecosystem dynamics." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ciceribacter Ciceribacter lividus Gram-negative rod aerobic 29 mesophilic 1197950 QPIX00000000.1 Bac0018904 Pseudidiomarina tainanensis strain 86_o Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina tainanensis 502365 QPJA00000000.1 Bac0018905 Marinobacter nauticus strain 114E Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter nauticus 2743 QPJB00000000.1 Bac0018906 Paenibacillus prosopidis strain CECT 7506 "Paenibacillus prosopidis strain CECT 7506 is a Gram-positive, rod-shaped bacterium characterized by its ability to form spores and its aerobic metabolism. This strain demonstrates optimal growth at a temperature of 29.0 °C, suggesting a preference for mesophilic conditions typically found in various terrestrial environments. ↵↵As a member of the genus Paenibacillus, this strain is positioned within a group of bacteria known for their diverse metabolic capabilities and roles in soil ecosystems. The ability to form spores enables P. prosopidis strain CECT 7506 to withstand adverse environmental conditions, thereby enhancing its survival and potential for colonization in fluctuating habitats.↵↵While specific ecological roles have not been detailed, the traits of P. prosopidis suggest potential involvement in nutrient cycling and soil health, as is common with other members of the Paenibacillus genus. The aerobic nature of this strain indicates its reliance on oxygen for metabolic processes, which aligns with its possible contributions to aerobic degradation of organic materials in its environment. This adaptability to spore formation and aerobic conditions may also facilitate its application in biotechnological processes, such as bioremediation or agricultural enhancement, where resilience and metabolic versatility are advantageous." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus prosopidis Gram-negative / Gram-positive rod aerobic 29 mesophilic spore-forming 630520 QPJD00000000.1 Bac0018907 Marinobacter nauticus strain 105B Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter nauticus 2743 QPJI00000000.1 Bac0018908 Saliterribacillus persicus strain DSM 27696 "Saliterribacillus persicus strain DSM 27696 is a Gram-positive, rod-shaped bacterium recognized for its spore-forming capabilities and aerobic metabolism. This strain thrives optimally at a temperature of 37.0°C, indicating its potential adaptation to environments that mimic mammalian body temperatures. ↵↵As a Gram-positive organism, S. persicus exhibits a thick peptidoglycan layer in its cell wall, which may confer resilience in various environmental conditions, including desiccation and exposure to certain antimicrobial agents. The ability to form spores suggests that S. persicus can withstand unfavorable conditions, allowing it to persist in habitats where nutrients may be limited or environmental stressors are present.↵↵The aerobic nature of this strain implies that it requires oxygen for its metabolic processes, potentially influencing its ecological niches. Such characteristics may enable S. persicus to play a role in biogeochemical cycles, particularly in environments where aerobic degradation of organic materials is essential.↵↵Overall, the combination of its Gram-positive cell structure, spore-forming ability, and aerobic metabolism positions Saliterribacillus persicus strain DSM 27696 as a unique organism that could contribute to microbial diversity and functionality in various ecosystems, particularly those exhibiting warm, oxygen-rich conditions." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Saliterribacillus Saliterribacillus persicus Gram-positive rod aerobic 37 mesophilic spore-forming 930114 QPJJ00000000.1 Bac0018909 Phyllobacterium bourgognense strain 31-25a Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Phyllobacterium Phyllobacterium bourgognense 314236 QPJM00000000.1 Bac0018910 Winogradskyella arenosi strain CECT 7958 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella arenosi 533325 QPJO00000000.1 Bac0018911 Anaerobacterium chartisolvens strain DSM 27016 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerobacterium Anaerobacterium chartisolvens anaerobic 1297424 QPJT00000000.1 Bac0018912 Extensimonas vulgaris strain DSM 100911 "Extensimonas vulgaris strain DSM 100911 is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This strain demonstrates optimal growth at a temperature of 45.0°C, suggesting a preference for thermophilic environments. The Gram-negative status indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may influence its interactions within various ecological niches.↵↵The aerobic requirement of Extensimonas vulgaris highlights its dependence on molecular oxygen for growth, which may restrict its habitat to oxygen-rich environments. This trait, coupled with its temperature preference, suggests that it could be adapted to thrive in warm, oxygenated settings, such as hot springs or thermally influenced soils, where other microbial communities might also flourish.↵↵Understanding the growth conditions of Extensimonas vulgaris strain DSM 100911 can provide insights into its potential role in biogeochemical cycles in high-temperature environments. Its specific adaptations to aerobic conditions at elevated temperatures may contribute to the degradation of organic materials or the cycling of nutrients in such ecosystems, underscoring its ecological importance. Further research could elucidate its interactions with other microorganisms in these unique habitats, enhancing our understanding of microbial diversity and function in extreme environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Extensimonas Extensimonas vulgaris Gram-negative rod aerobic 45 thermophilic non-spore-forming 1031594 QPJU00000000.1 Bac0018913 Fontibacillus phaseoli strain CECT 8333 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Fontibacillus Fontibacillus phaseoli 1416533 QPJW00000000.1 Bac0018914 Thioalbus denitrificans strain DSM 26407 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Thioalbus Thioalbus denitrificans microaerophile 547122 QPJY00000000.1 Bac0018915 Bacillus amyloliquefaciens strain E1101 "Bacillus amyloliquefaciens strain E1101 is a Gram-positive, rod-shaped bacterium that is capable of sporulation and thrives in aerobic environments. This strain, like other members of the Bacillus genus, is commonly found in soil, where it plays a significant role in nutrient cycling and soil health. The sporulating ability of B. amyloliquefaciens E1101 allows it to withstand adverse environmental conditions, enabling the organism to persist in habitats that may experience fluctuations in moisture and nutrient availability.↵↵As an aerobe, this strain requires oxygen for growth, which aligns with its ecological niche in well-aerated soils. The presence of B. amyloliquefaciens in the soil may contribute to the suppression of soil-borne pathogens and promotion of plant growth, suggesting its potential utility in agricultural practices. Furthermore, the ability of this strain to produce various enzymes, including amylase, could enhance its role in the degradation of organic matter in soil, thereby improving soil structure and fertility.↵↵Overall, Bacillus amyloliquefaciens strain E1101 exemplifies the complex interactions within soil ecosystems, highlighting its potential contributions to sustainable agriculture and soil management practices through its aerobic metabolism and sporulation capabilities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus amyloliquefaciens Positive Rod Yes 1 1 Aerobe Mesophilic Soil Free living Sporulating 1390 QPJZ00000000.1 Bac0018916 Acinetobacter sp. RIT592 1062 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. RIT592 2282417 QPKU00000000.1 Bac0018917 Pedobacter chinensis strain JDX94 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter chinensis 2282421 QPKV00000000.1 Bac0018918 Rhodovulum sp. 12E13 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sp. 12E13 2203891 QPLK00000000.1 Bac0018919 Haloarcula sp. Atlit-120R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula sp. Atlit-120R 2282135 QPLN00000000.1 Bac0018920 Haloferax sp. Atlit-105R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. Atlit-105R 2282133 QPLP00000000.1 Bac0018921 Haloarcula sp. Atlit-47R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula sp. Atlit-47R 2282132 QPLQ00000000.1 Bac0018922 Halorubrum sp. Atlit-9R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. Atlit-9R 2282127 QPLU00000000.1 Bac0018923 Ferruginivarius sediminum strain WD2A32 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodovibrionaceae Ferruginivarius Ferruginivarius sediminum 2661937 QPMH00000000.1 Bac0018924 Thalassococcus profundi strain WRAS1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Thalassococcus Thalassococcus profundi 2282382 QPMK00000000.1 Bac0018925 Paracoccus versutus strain MAL 1HM19 "Paracoccus versutus strain MAL 1HM19 is a coccoid-shaped bacterium that exhibits notable physiological and biochemical characteristics. As a member of the genus Paracoccus, this strain likely shares common metabolic capabilities, including the ability to utilize a range of organic substrates. The coccal morphology may facilitate its survival in diverse environmental conditions, promoting adaptability and resilience. ↵↵While specific metabolic pathways for strain MAL 1HM19 are not detailed, members of the Paracoccus genus are well-known for their versatility in energy acquisition, including both aerobic respiration and fermentation processes. This metabolic flexibility is an advantageous trait for survival in varying habitats. ↵↵The strain’s cocci shape may also influence its interactions with other microorganisms and its ability to form biofilms, which are critical for various ecological niches. The presence of coccoid cells can enhance the structural integrity of microbial communities, supporting nutrient exchange and cooperation among different species.↵↵Insights into the ecological role of Paracoccus versutus strain MAL 1HM19 suggest that its coccal morphology, combined with potential metabolic versatility, positions it as a significant player in biogeochemical cycles. Its adaptability may contribute to nutrient cycling and organic matter degradation in its native habitat, reflecting the ecological importance of coccoid bacteria in maintaining ecosystem health and stability." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus versutus Cocci 34007 QPML00000000.1 Bac0018926 Enterococcus faecium strain ARL09-409 "Enterococcus faecium strain ARL09-409 is a Gram-positive cocci that thrives in anaerobic conditions, exhibiting facultative anaerobic metabolism. This strain is notably isolated from fermented mare milk, suggesting its role in dairy fermentation processes. Enterococcus faecium is part of the Enterococcus genus, which is known for its resilience and adaptability in various environments.↵↵The coccoid shape of strain ARL09-409 aligns with the characteristic morphology of the Enterococcus genus, which typically comprises spherical bacteria that can form pairs or short chains. The strain's ability to grow in both the presence and absence of oxygen highlights its metabolic versatility, allowing it to occupy diverse ecological niches.↵↵The isolation of this strain specifically from fermented mare milk indicates potential applications in dairy biotechnology, particularly in the production of fermented dairy products. The unique habitat suggests that Enterococcus faecium strain ARL09-409 may contribute to the flavor development and preservation of fermented mare milk, potentially influencing its sensory properties and shelf-life. This insight underscores the potential significance of this strain in traditional fermentation practices and its role in the microbial ecosystems associated with fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPQY00000000.1 Bac0018927 Enterococcus faecium strain ARL09-193 "Enterococcus faecium strain ARL09-193 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain has been isolated from fermented mare milk, indicating its role in the fermentation process and suggesting potential applications in dairy microbiology.↵↵The presence of Enterococcus faecium in fermented mare milk highlights its adaptability and potential contribution to the unique flavor profile and preservation of this traditional product. As a facultative anaerobe, this strain can survive in varying oxygen levels, which may provide it with a competitive advantage in diverse microbial communities associated with dairy fermentation.↵↵The ecological niche of fermented mare milk is significant, as it serves as a substrate for various microbial interactions. The ability of Enterococcus faecium strain ARL09-193 to persist in this habitat suggests it may play a role in the complex microbial dynamics of fermentation, potentially influencing the production of beneficial metabolites or the inhibition of spoilage organisms. Further studies could elucidate its specific contributions to the fermentation process and its interactions with other microbial species within this niche." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPQZ00000000.1 Bac0018928 Enterococcus faecium strain ARL08-804 "Enterococcus faecium strain ARL08-804 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this microbe can grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions typically encountered in dairy fermentation processes. ↵↵The strain's association with fermented mare milk suggests a potential role in the fermentation process, possibly contributing to the flavor profile and preservation of this traditional dairy product. The presence of Enterococcus species in such habitats highlights their importance in dairy microbiology, particularly in the development of artisanal cheeses and fermented drinks. ↵↵Further investigations into the metabolic capabilities of Enterococcus faecium strain ARL08-804 could provide insights into its contributions to the fermentation process and its interactions with other microbial communities present in fermented mare milk. Understanding these interactions may enhance our knowledge of microbial dynamics in dairy fermentation and could have implications for improving fermentation techniques and product quality in the dairy industry." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPRI00000000.1 Bac0018929 Enterococcus faecium strain ARL08-67 "Enterococcus faecium strain ARL08-67 is a Gram-positive cocci that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this strain is capable of surviving in both aerobic and anaerobic environments, allowing it to adapt effectively to the fluctuating conditions within the fermentation process. The ability of Enterococcus faecium to persist in fermented dairy products suggests that it may play a role in the complex microbial communities that develop during milk fermentation.↵↵The presence of Enterococcus faecium in fermented mare milk could indicate its potential involvement in the biochemical processes that contribute to the flavor and preservation of this product. Furthermore, this strain exemplifies the diverse metabolic capabilities of lactic acid bacteria, which are often utilized in fermentation due to their ability to produce lactic acid and other metabolites. Understanding the specific traits and behaviors of Enterococcus faecium strain ARL08-67 may provide insights into its functional contributions within fermented dairy ecosystems, particularly in relation to the interactions between microbial species and the fermentation substrate. This highlights the significance of studying such strains to enhance the quality and safety of fermented foods." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPRL00000000.1 Bac0018930 Enterococcus faecium strain ARL08-552 "Enterococcus faecium strain ARL08-552 is a Gram-positive, cocci-shaped bacterium that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic growth, indicating its ability to survive and proliferate in both the presence and absence of oxygen. Enterococcus faecium is known for its resilience and capacity to adapt to various environmental conditions, which is reflected in its ability to inhabit fermented dairy products. The specific isolation of strain ARL08-552 from mare milk suggests potential implications for its role in fermentation processes and its contribution to the flavor profile and preservation of this traditional product. ↵↵The presence of Enterococcus faecium in such a niche habitat may also indicate its symbiotic relationships with other microbial communities present in fermented mare milk. Understanding the interactions and metabolic pathways of strain ARL08-552 could provide further insights into its ecological significance, particularly in the context of dairy fermentation and microbial diversity. Thus, this strain not only exemplifies the adaptability of Enterococcus species but also highlights the importance of specific microbial strains in traditional fermentation practices." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPRM00000000.1 Bac0018931 Enterococcus faecium strain ARL08-477 "Enterococcus faecium strain ARL08-477 is a Gram-positive cocci that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic characteristics, allowing it to grow in both aerobic and anaerobic environments. Enterococcus faecium is recognized for its versatility in metabolic activity, which can be advantageous in various fermentation processes. The specific adaptation of strain ARL08-477 to fermented mare milk suggests a potential role in dairy fermentation, possibly contributing to the development of flavor and texture in fermented products. Additionally, this strain may offer insights into the microbial dynamics of equine dairy ecosystems, highlighting its potential applications in improving fermentation efficiency or enhancing the nutritional profile of fermented mare milk products. The presence of Enterococcus faecium in this niche environment underscores the ecological significance of lactic acid bacteria in the fermentation of animal milks, particularly those that are less commonly explored." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPRO00000000.1 Bac0018932 Enterococcus faecium strain ARL08-46 "Enterococcus faecium strain ARL08-46 is a Gram-positive cocci that thrives in the specific habitat of fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. The ability to inhabit fermented mare milk suggests a potential role in the fermentation process, possibly contributing to the flavor and preservation of this unique dairy product. ↵↵Enterococcus faecium is generally known for its resilience in various environments, and strain ARL08-46's adaptation to a specific niche indicates a specialized interaction with the substrates available in fermented mare milk. The fermentation process itself may provide a selective advantage for this strain, promoting its growth and survival in the microbial community associated with this habitat. ↵↵Additionally, the presence of such strains in fermented products highlights the importance of microbial interactions in food systems, potentially influencing the nutritional and sensory qualities of mare milk. Understanding the traits of Enterococcus faecium strain ARL08-46 could provide insights into its functional roles in fermentation and its implications for traditional food practices." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPRP00000000.1 Bac0018933 Enterococcus faecium strain ARL08-391 "Enterococcus faecium strain ARL08-391 is a Gram-positive, coccoid bacterium that exhibits facultative anaerobic respiration. This strain has been isolated from fermented mare milk, suggesting a specific ecological niche where it may play a role in the fermentation process. The cocci shape of E. faecium is characteristic of the Enterococcus genus, which is known for its resilience in various environments.↵↵The ability to thrive in fermented mare milk indicates that Enterococcus faecium strain ARL08-391 may contribute to the microbial diversity and biochemical activities associated with dairy fermentation. Its facultative anaerobic nature allows it to adapt to varying oxygen levels, which may enhance its survivability and functionality in the complex microbial community of fermented products. This adaptability could also facilitate metabolic interactions with other microorganisms present in the milk substrate, potentially influencing the flavor, texture, and safety of the final fermented product.↵↵Overall, the unique habitat of Enterococcus faecium strain ARL08-391 in fermented mare milk provides insights into its ecological role in dairy fermentation processes, where it may interact synergistically with other microbial species to shape the characteristics of the product. Further investigation into its metabolic pathways and interactions could reveal additional contributions to fermentation and food safety in dairy applications." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPRT00000000.1 Bac0018934 Enterococcus faecium strain ARL08-1412 "Enterococcus faecium strain ARL08-1412 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is isolated from fermented mare milk, indicating its adaptation to a dairy environment where fermentation processes are critical for flavor development and preservation. The ability to thrive in both the presence and absence of oxygen suggests that E. faecium strain ARL08-1412 can efficiently utilize various metabolic pathways to survive and grow under varying conditions, which may play a significant role in the fermentation processes of mare milk.↵↵The presence of this strain in fermented mare milk highlights its potential contribution to the unique microbial community of dairy products, where it may influence the sensory attributes and safety of the final product. Additionally, its resilience and adaptability in an anaerobic environment could provide insights into its metabolic versatility and ecological role within the fermentation ecosystem. This trait may facilitate its use in biotechnological applications, particularly in dairy fermentation, where it could enhance the quality and safety of fermented milk products. Further research into the specific metabolic pathways and interactions of E. faecium strain ARL08-1412 within its habitat could elucidate its functional significance in fermented foods and its potential benefits in food microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSB00000000.1 Bac0018935 Enterococcus faecium strain ARL08-1292 "Enterococcus faecium strain ARL08-1292 is a Gram-positive cocci that demonstrates facultative anaerobic respiration. This strain has been isolated from fermented mare milk, suggesting its adaptation to a unique niche within dairy fermentation processes. As a member of the Enterococcus genus, E. faecium is known for its resilience in various environments, and its ability to thrive in both the presence and absence of oxygen enhances its competitive advantage in microbial communities associated with dairy products.↵↵The habitat of fermented mare milk indicates that E. faecium strain ARL08-1292 may play a role in the fermentation process, potentially contributing to the development of flavor and preservation of the milk. The presence of this strain in such an environment might also reflect its metabolic capabilities, which allow it to utilize various substrates present in the fermentation medium. Additionally, its Gram-positive nature suggests a robust cell wall structure, which may be advantageous in withstanding the acidic conditions typically associated with fermentation.↵↵Overall, the ecological niche of Enterococcus faecium strain ARL08-1292 in fermented mare milk highlights its potential significance in traditional dairy fermentation practices and may provide insights into the microbial dynamics of fermented products. Further studies could elucidate its specific contributions to flavor development and preservation, as well as its interactions with other microbial inhabitants in this complex ecosystem." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSD00000000.1 Bac0018936 Enterococcus faecium strain ARL08-1256 "Enterococcus faecium strain ARL08-1256 is a Gram-positive, cocci-shaped bacterium that inhabits fermented mare milk. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a member of the Enterococcus genus, E. faecium is known for its resilience and adaptability, which may contribute to its ability to survive in various fermentation processes.↵↵The fermentation of mare milk, a traditional practice in some cultures, may provide a unique ecological niche for E. faecium strain ARL08-1256, where it could play a role in the microbial community dynamics and the development of flavor profiles in the final product. The presence of this organism in fermented mare milk highlights the potential for beneficial interactions between microbial species in dairy fermentation processes, emphasizing the importance of studying such strains for their applications in food science and biotechnology. Further research into the metabolic pathways and interactions of E. faecium strain ARL08-1256 could provide insights into its role in fermentation and its potential use in probiotic applications." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSE00000000.1 Bac0018937 Enterococcus faecium strain ARL08-1218 "Enterococcus faecium strain ARL08-1218 is a Gram-positive coccus that thrives in the habitat of fermented mare milk. This strain exhibits facultative anaerobic metabolism, allowing it to grow in both aerobic and anaerobic environments. The ability to ferment sugars makes Enterococcus faecium an important player in dairy fermentation processes, contributing to the development of flavor and texture in fermented products. ↵↵The presence of this strain in fermented mare milk highlights its potential role in traditional fermentation practices, where it may influence the microbial community dynamics and contribute to the sensory characteristics of the final product. Furthermore, the adaptability of E. faecium to varying oxygen levels suggests its resilience in diverse ecological niches, potentially allowing it to outcompete other microorganisms in similar habitats. Understanding the specific traits of Enterococcus faecium strain ARL08-1218 can provide insights into its functional contributions to fermentation and its interactions within the microbiota of fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSG00000000.1 Bac0018938 Enterococcus faecium strain ARL08-1215 "Enterococcus faecium strain ARL08-1215 is a Gram-positive cocci bacterium that has been isolated from fermented mare milk, indicating its adaptation to this unique habitat. As a facultative anaerobe, this strain has the capability to survive and thrive in both aerobic and anaerobic environments, which may enhance its versatility in fermentation processes. ↵↵The presence of Enterococcus faecium in fermented mare milk suggests its potential role in the fermentation microbiota, contributing to the development of flavor and texture in the final product. This strain's ability to ferment lactose and other carbohydrates can influence the biochemical characteristics of the fermented milk, potentially impacting the nutritional and sensory properties of the product. ↵↵Given that Enterococcus species are often involved in dairy fermentation, strain ARL08-1215’s specific traits may provide insights into the ecological interactions within fermented foods, particularly in relation to the fermentation dynamics that occur in a niche environment such as mare milk. Further studies on this strain could elucidate its functional contributions to fermentation and its interactions with other microbial species in similar ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSH00000000.1 Bac0018939 Enterococcus faecium strain ARL08-1189 "Enterococcus faecium strain ARL08-1189 is a Gram-positive coccus that exhibits facultative anaerobic metabolism and is primarily found in fermented mare milk. As a member of the Enterococcus genus, this strain is characterized by its spherical shape, which typically occurs in pairs or short chains. The ability to thrive in both aerobic and anaerobic environments allows E. faecium ARL08-1189 to adapt to various fermentation conditions, contributing to its persistence in dairy ecosystems.↵↵The fermentation of mare milk is noteworthy, as this habitat may influence the strain's metabolic pathways and probiotic potential. While Enterococcus species are often studied for their role in food fermentation, their presence in fermented mare milk suggests a possible role in enhancing the nutritional and sensory qualities of this product. Additionally, the strain's association with mare milk indicates a unique adaptation mechanism to the specific chemical and microbial milieu of this environment.↵↵In summary, Enterococcus faecium strain ARL08-1189 exemplifies the capabilities of certain lactic acid bacteria to thrive in specialized habitats, such as fermented mare milk, potentially influencing both the fermentation process and the overall quality of the resulting dairy products. This underscores the importance of investigating microbial diversity in traditional fermentation practices for insights into beneficial microbial interactions." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSI00000000.1 Bac0018940 Enterococcus faecium strain ARL08-1077 "Enterococcus faecium strain ARL08-1077 is a Gram-positive cocci that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. ↵↵As a member of the Enterococcus genus, E. faecium is recognized for its resilience and ability to survive in diverse conditions. The presence of this strain in fermented mare milk suggests a role in the fermentation process, potentially contributing to the flavor and preservation of the product. Fermented mare milk has cultural significance in various regions and is known for its probiotic properties, which may be influenced by the microbial community present, including E. faecium ARL08-1077.↵↵The strain's ability to thrive in a dairy environment also raises interesting questions about its interactions with other microbial species in the fermentation process, as well as its potential applications in dairy biotechnology. Further studies could elucidate the specific roles this strain plays in fermentation dynamics and its overall impact on the quality and safety of dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSJ00000000.1 Bac0018941 Enterococcus faecium strain ARL08-105 "Enterococcus faecium strain ARL08-105 is a Gram-positive, cocci-shaped bacterium that demonstrates facultative anaerobic characteristics and is primarily found in fermented mare milk. This strain belongs to the genus Enterococcus, which is known for its ability to survive in various environments and its role in fermentation processes. The Gram-positive nature of E. faecium indicates a thick peptidoglycan layer in its cell wall, which is a defining feature of its classification within the Firmicutes phylum.↵↵The strain's presence in fermented mare milk suggests its potential involvement in dairy fermentation, contributing to the unique microbial community in this habitat. The facultative anaerobic nature of E. faecium allows it to thrive in both aerobic and anaerobic conditions, providing metabolic flexibility that may enhance its survival and functionality in diverse environments, particularly those associated with fermentation processes.↵↵Understanding the ecological role of Enterococcus faecium strain ARL08-105 in fermented mare milk could shed light on its contributions to flavor development, preservation, and the overall microbiota dynamics in dairy products. This highlights the importance of studying specific strains within microbial communities to appreciate their contributions to food fermentation and quality." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSL00000000.1 Bac0018942 Enterococcus faecium strain ARL07-973 "Enterococcus faecium strain ARL07-973 is a Gram-positive cocci that is classified within the genus Enterococcus. This strain is notably found in fermented mare milk, indicating its potential role in dairy fermentation processes. As a facultative anaerobe, E. faecium ARL07-973 can thrive in both aerobic and anaerobic environments, suggesting its adaptability to varying oxygen levels in its natural habitat.↵↵The presence of this strain in fermented mare milk highlights its significance in traditional dairy practices and suggests a potential contribution to the flavor and texture of the final product. Furthermore, the ability of E. faecium to survive and flourish in different oxygen conditions may provide insights into its metabolic versatility, which could be beneficial for its application in food biotechnology or probiotic development.↵↵Overall, the ecological niche of Enterococcus faecium strain ARL07-973 in fermented mare milk emphasizes the importance of microbial diversity in food systems and the potential for harnessing such strains for enhancing dairy fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSM00000000.1 Bac0018943 Enterococcus faecium strain ARL07-1286 "Enterococcus faecium strain ARL07-1286 is a Gram-positive, cocci-shaped bacterium that thrives in fermented mare milk. As a facultative anaerobe, this strain can survive in both aerobic and anaerobic environments, allowing it to adapt to various conditions within its niche. The ability to inhabit fermented mare milk suggests a role in the fermentation process, potentially contributing to the development of the unique flavors and characteristics associated with this dairy product.↵↵The presence of Enterococcus faecium strain ARL07-1286 in such a specific habitat may also indicate its potential interactions with other microorganisms present in fermented mare milk, influencing the microbial community structure and metabolic activities. This strain exemplifies the diversity of lactic acid bacteria found in traditional dairy fermentation processes, highlighting the importance of microbial dynamics in food production and preservation. Understanding the traits and behaviors of Enterococcus faecium strain ARL07-1286 could provide insights into its functional roles in fermentation and its applications in dairy science." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPST00000000.1 Bac0018944 Enterococcus faecium strain ARL07-1169 "Enterococcus faecium strain ARL07-1169 is a Gram-positive coccus that demonstrates facultative anaerobic metabolism. This strain is notably isolated from fermented mare milk, indicating its potential role in the fermentation processes associated with this particular habitat. As a member of the Enterococcus genus, E. faecium is recognized for its resilience and adaptability, which may contribute to its survival in various environments, including dairy fermentation systems.↵↵The spherical shape of E. faecium strain ARL07-1169 allows for efficient colony formation and may influence its interactions with other microbial species present in fermented mare milk. The facultative anaerobic nature of this strain suggests that it can thrive in both the presence and absence of oxygen, which is a crucial trait for microbial survival in diverse ecological niches, especially in the context of dairy fermentation where oxygen levels can fluctuate.↵↵The association of E. faecium strain ARL07-1169 with fermented mare milk underscores its potential significance in traditional fermentation practices and its role in contributing to the flavor and texture of dairy products. Furthermore, the ability of this strain to adapt to anaerobic conditions may provide insights into the metabolic pathways utilized during fermentation, which could be valuable for the optimization of dairy fermentation processes and the development of probiotic applications." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSX00000000.1 Bac0018945 Enterococcus faecium strain ARL07-1163 "Enterococcus faecium strain ARL07-1163 is a Gram-positive cocci that was isolated from fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The ecological niche of E. faecium strain ARL07-1163 in fermented mare milk suggests its potential role in the fermentation process, possibly contributing to the development of flavor and preservation of the milk product. ↵↵The ability to ferment lactose and other carbohydrates is a common trait among Enterococcus species, which may enhance its survival and competitive advantage in the dairy environment. Moreover, the presence of this strain in fermented mare milk highlights the significance of E. faecium in the dairy industry, particularly in the production of traditional fermented foods. Further investigations into the metabolic pathways and interactions of E. faecium strain ARL07-1163 could provide valuable insights into its functional contributions to fermentation dynamics and its potential application in food technology. Understanding the specific bioprocesses utilized by this strain could inform strategies for optimizing fermentation processes in dairy production and improving product quality." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPSZ00000000.1 Bac0018946 Enterococcus faecium strain ARL07-1139 "Enterococcus faecium strain ARL07-1139 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this strain possesses the ability to grow in both the presence and absence of oxygen, which may confer an advantage in the dynamic environments of dairy fermentation processes. The specific adaptation to fermented mare milk suggests that E. faecium strain ARL07-1139 may play a role in the microbial community associated with this niche, potentially contributing to the fermentation process and the development of the milk's flavor and texture.↵↵Given its habitat, Enterococcus faecium strain ARL07-1139 may exhibit metabolic pathways that are well-suited for the utilization of lactose and other carbohydrates present in mare milk. The presence of this strain in fermented mare milk also raises intriguing questions about its interactions with other microbial species within this environment, as well as its potential applications in dairy production. Further research into the metabolic capabilities and interactions of this strain could provide valuable insights into the fermentation processes of equine milk and its implications for food science and microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPTA00000000.1 Bac0018947 Enterococcus faecium strain ARL05-67 "Enterococcus faecium strain ARL05-67 is a Gram-positive cocci that thrives in the unique ecological niche of fermented mare milk. As a facultative anaerobe, this strain possesses the metabolic versatility to utilize both aerobic and anaerobic conditions, allowing it to adapt effectively to varying environments within its habitat. ↵↵The ability of E. faecium to ferment lactose and other carbohydrates present in mare milk contributes to its survival and proliferation in this specific environment, where it may play a role in the fermentation process. Its presence in fermented dairy products suggests potential applications in food microbiology, particularly in the development of novel probiotic products or fermentation starters.↵↵Given the strain's specific isolation from fermented mare milk, it may exhibit unique enzymatic activities or metabolic pathways that could be of interest for further studies in dairy fermentation processes or the exploration of beneficial microbial interactions in this habitat. Understanding the traits of Enterococcus faecium strain ARL05-67 could provide insights into its functionality and potential utility in both industrial and health-related applications." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPTB00000000.1 Bac0018948 Enterococcus faecium strain ARL04-840 "Enterococcus faecium strain ARL04-840 is a Gram-positive, cocci-shaped bacterium that thrives in the unique habitat of fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. As a member of the Enterococcus genus, E. faecium is known for its ability to survive in diverse conditions, which may contribute to its presence in fermented dairy products.↵↵The ecological niche of strain ARL04-840 in fermented mare milk suggests potential interactions with other microbial populations found in this substrate, which can influence fermentation processes and flavor development. The strain’s adaptation to a specific substrate highlights the importance of microbial diversity in traditional fermentation practices. Understanding the characteristics and behaviors of Enterococcus faecium strain ARL04-840 may provide insights into its role in the fermentation ecosystem, potentially offering avenues for exploring beneficial properties in food science and microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPTD00000000.1 Bac0018949 Enterococcus faecalis strain ARL04-506 "Enterococcus faecalis strain ARL04-506 is a Gram-positive, nonsporulating cocci that thrives optimally at 37.0°C. As a chemoorganotroph, this strain derives energy from organic compounds, allowing it to adapt to a variety of environmental conditions. Notably, E. faecalis exhibits facultative anaerobic respiration, enabling it to grow in both aerobic and anaerobic environments. This metabolic flexibility contributes to its ability to inhabit diverse ecological niches, ranging from the gastrointestinal tracts of humans and animals to various environmental settings. ↵↵The adaptability of Enterococcus faecalis strain ARL04-506 highlights the species' resilience and ecological versatility, which may play a role in its interactions within microbial communities and its potential for survival in fluctuating environments. Understanding the specific habitats and conditions that support this strain may provide insights into its ecological significance and functional roles within microbiomes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTE00000000.1 Bac0018950 Enterococcus faecalis strain AR99-84 "Enterococcus faecalis strain AR99-84 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. This strain is classified as a chemoorganotroph, indicating its ability to utilize organic compounds as energy sources. Enterococcus faecalis is known to inhabit a variety of environments, which suggests its ecological versatility.↵↵The coccal morphology of E. faecalis contributes to its resilience in diverse habitats, including the gastrointestinal tracts of humans and other animals, as well as in soil and water. The facultative anaerobic nature of this strain allows it to survive in both aerobic and anaerobic conditions, enhancing its adaptability to fluctuating environmental oxygen levels. ↵↵Furthermore, the ability to thrive at an optimal temperature of 37.0°C aligns with its association with warm-blooded hosts, where it frequently plays a role in the complex microbiota. This adaptability and metabolic flexibility may facilitate its persistence in various niches, potentially influencing microbial community dynamics and nutrient cycling in those ecosystems. Understanding the traits of Enterococcus faecalis strain AR99-84 may provide insight into its ecological roles and interactions within microbial communities, particularly in environments where organic matter is abundant." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTG00000000.1 Bac0018951 Enterococcus faecalis strain AR99-190 "Enterococcus faecalis strain AR99-190 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. As a chemoorganotroph, this strain utilizes organic compounds as energy sources, allowing it to adapt to a variety of habitats. Its ability to grow in both aerobic and anaerobic conditions suggests a versatile ecological role, potentially enabling it to colonize diverse environments, including human-associated microbiomes and various substrates within natural ecosystems. ↵↵The facultative anaerobic nature of E. faecalis strain AR99-190 indicates its capacity to switch metabolic pathways depending on the availability of oxygen, which may contribute to its resilience in fluctuating environmental conditions. This adaptability underscores the strain's potential for persistence in both clinical and non-clinical settings, where it may encounter varying oxygen levels. Further research on this strain may elucidate its specific contributions to microbial communities and its interactions within different ecological niches, particularly in relation to its role in nutrient cycling or as a component of the gut microbiota." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTH00000000.1 Bac0018952 Enterococcus faecalis strain AR99-1024 "Enterococcus faecalis strain AR99-1024 is a Gram-positive cocci that exhibits a facultative anaerobic metabolism, functioning as a chemoorganotroph. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, indicating its potential adaptability to warm-blooded hosts. E. faecalis is nonsporulating, a characteristic that may influence its survival strategies in various habitats.↵↵This strain is capable of growth in diverse environments, suggesting a high level of ecological versatility. The facultative anaerobic nature allows E. faecalis AR99-1024 to survive in both oxygen-rich and oxygen-poor conditions, enhancing its adaptability to fluctuating environmental conditions. Such traits are indicative of its resilience in complex microbial communities, where competition for resources may be intense.↵↵The ability to utilize organic compounds as energy sources further emphasizes its role in nutrient cycling within its habitats. Given these traits, Enterococcus faecalis strain AR99-1024 may contribute significantly to microbial dynamics in both natural and anthropogenic ecosystems, potentially influencing the degradation of organic matter and the maintenance of microbial diversity. This adaptability and metabolic flexibility suggest that this strain could play a crucial role in the broader ecological processes where it is found." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTJ00000000.1 Bac0018953 Enterococcus faecium strain AR98-565 "Enterococcus faecium strain AR98-565 is a Gram-positive coccus that has been isolated from fermented mare milk, indicating its role in dairy fermentation processes. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, demonstrating its metabolic versatility. This adaptability may contribute to its survival and competitive advantage in the dynamic microbial community present in fermented dairy products.↵↵The presence of Enterococcus faecium in fermented mare milk highlights its potential importance in traditional dairy practices and suggests a role in the development of specific flavor profiles and texture in the final product. The strain’s ability to ferment lactose and other sugars present in milk could also enhance the preservation and safety of fermented dairy products, although its specific contributions to these processes require further investigation.↵↵In addition, the isolation of this strain from a unique habitat such as fermented mare milk suggests that Enterococcus faecium AR98-565 may possess specialized metabolic pathways or enzymatic capabilities that are adapted to the unique biochemical environment of mare milk fermentation. This characteristic may provide insights into the ecological interactions within fermentation systems and the potential application of this strain in the development of novel dairy products. Further research could elucidate the functional roles of this strain in both traditional and modern fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPTK00000000.1 Bac0018954 Enterococcus faecalis strain AR01-802 "Enterococcus faecalis strain AR01-802 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. This strain is classified as a chemoorganotroph, indicating its capacity to derive energy from organic compounds. Enterococcus faecalis is known to inhabit diverse environments, reflecting its adaptability to various ecological niches.↵↵The coccus shape of E. faecalis is characteristic of the Enterococcus genus, which is notable for its resilience and ability to survive in fluctuating conditions. The facultative anaerobic nature of this strain allows it to perform both aerobic respiration and fermentation, thus enabling it to utilize a range of substrates for energy production. This metabolic flexibility may contribute to its prevalence in various habitats, including human and animal gastrointestinal tracts, as well as in environmental settings.↵↵The strain's ability to thrive in multiple habitats suggests a potential role in microbial community dynamics, particularly in environments where organic matter is available. Its presence in diverse ecosystems may also influence nutrient cycling processes and interactions with other microbial species. Understanding the ecological roles of Enterococcus faecalis strain AR01-802 could provide insights into its contributions to microbial diversity and ecosystem functioning." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTN00000000.1 Bac0018955 Enterococcus faecalis strain AR01-215 "Enterococcus faecalis strain AR01-215 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, utilizing organic compounds as a chemoorganotrophic energy source. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptability to diverse habitats, including those found in both human and animal microbiomes. ↵↵As a member of the Enterococcus genus, E. faecalis is known for its resilience in various environments and can often be isolated from a range of ecological niches, including soil, water, and the gastrointestinal tracts of mammals. The facultative anaerobic nature of this strain allows it to survive in both the presence and absence of oxygen, contributing to its versatility in fluctuating environmental conditions.↵↵The ability of E. faecalis strain AR01-215 to thrive in multiple habitats suggests its potential role in nutrient cycling and microbial community dynamics. Its chemoorganotrophic lifestyle indicates that it may participate in the degradation of organic matter, thus influencing the microbial ecology of its surroundings. Understanding the characteristics and ecological roles of this strain can provide insights into its interactions within microbial communities and its contributions to environmental processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTP00000000.1 Bac0018956 Enterococcus faecalis strain AR00-128 "Enterococcus faecalis strain AR00-128 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism and is classified as a chemoorganotroph, utilizing organic compounds for energy. This strain is nonsporulating, which suggests that it relies on its environmental resilience rather than sporulation for survival under adverse conditions. The optimal growth temperature for Enterococcus faecalis AR00-128 is 37.0°C, aligning with the typical temperature of mammalian hosts, indicating a potential association with warm-blooded organisms.↵↵Enterococcus faecalis is known to inhabit diverse environments, reflecting its adaptability and ecological versatility. Its facultative anaerobic nature allows it to thrive in both aerobic and anaerobic conditions, enhancing its survival in varied habitats, such as gastrointestinal tracts and soil. The ability to utilize a range of organic substrates as energy sources further supports its ecological plasticity.↵↵Given the strain's characteristics, it may play a significant role in nutrient cycling within its habitats, particularly in organic matter decomposition. The adaptability of Enterococcus faecalis strain AR00-128 to different oxygen levels and its metabolic flexibility suggest it could contribute to microbial community dynamics in both natural and potentially anthropogenic environments. This adaptability underscores its ecological importance and potential interactions with other microbial populations." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTT00000000.1 Bac0018957 Enterococcus faecalis strain VV8 "Enterococcus faecalis strain VV8 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism. This strain thrives optimally at a temperature of 37.0°C, indicative of its adaptation to warm-blooded hosts. As a chemoorganotroph, Enterococcus faecalis strain VV8 utilizes organic compounds as its energy source, allowing it to flourish in a variety of habitats, which may include both human-associated and environmental niches.↵↵The facultative anaerobic nature of this strain enables it to survive in both aerobic and anaerobic conditions, a trait that enhances its ecological versatility. Enterococcus faecalis is known for its resilience in diverse environments, including the gastrointestinal tracts of mammals, where it plays a role in the microbial community. The ability to thrive in multiple habitats may contribute to its persistence and adaptability, making it an interesting subject for further research regarding its ecological roles and interactions with other microbial populations.↵↵Understanding the ecological context of Enterococcus faecalis strain VV8 may provide insights into its potential contributions to microbial diversity and ecosystem function, particularly in environments where organic matter is abundant." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTV00000000.1 Bac0018958 Enterococcus faecium strain VV6 "Enterococcus faecium strain VV6 is a Gram-positive coccus primarily isolated from fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The ability to grow in varied oxygen conditions may contribute to its successful adaptation in the unique habitat of fermented mare milk, where fluctuating oxygen levels can occur during fermentation processes.↵↵As a member of the Enterococcus genus, E. faecium is notable for its resilience and adaptability, traits that are often linked to its ability to survive in diverse environments. The presence of this strain in fermented mare milk highlights its potential role in dairy fermentation processes, possibly contributing to the development of specific flavors or textures in the final product. Furthermore, the association with fermented products suggests that E. faecium VV6 might be involved in the complex microbial interactions that occur during fermentation, which could influence not only the fermentation dynamics but also the microbial diversity within the habitat.↵↵The adaptability of Enterococcus faecium strain VV6 to different oxygen conditions and its specific habitat indicate its potential utility in food fermentation and probiotic applications. Understanding its role within the fermentation ecosystem could provide insights into microbial dynamics and product development in traditional dairy practices." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPTW00000000.1 Bac0018959 Enterococcus faecalis strain VV5 "Enterococcus faecalis strain VV5 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic characteristics. This strain thrives optimally at a temperature of 37.0 °C and operates as a chemoorganotroph, utilizing organic compounds as energy sources. Enterococcus faecalis is known to inhabit multiple environments, reflecting its versatility and adaptability to various ecological niches.↵↵As a facultative anaerobe, strain VV5 can grow in both the presence and absence of oxygen, allowing it to colonize diverse habitats, including the gastrointestinal tracts of humans and animals, as well as environmental sources such as soil and water. This adaptability may contribute to its persistence and survival in fluctuating conditions, making it a model organism for studying microbial resilience.↵↵Further investigation of Enterococcus faecalis strain VV5 could provide insights into its metabolic pathways and ecological roles in nutrient cycling within its habitats. Understanding these traits can enhance our knowledge of microbial interactions in complex ecosystems where Enterococcus species are prevalent." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTX00000000.1 Bac0018960 Enterococcus faecalis strain VV14 "Enterococcus faecalis strain VV14 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C. This strain exhibits chemoorganotrophic metabolism, utilizing organic compounds as energy sources, and demonstrates facultative anaerobic characteristics, allowing it to adapt to both aerobic and anaerobic environments. ↵↵E. faecalis is known to inhabit diverse ecological niches, which may include the gastrointestinal tracts of humans and animals, as well as environmental sources such as soil and water. The versatility in habitat suggests a significant role in various microbial communities, potentially contributing to nutrient cycling and the maintenance of ecosystem homeostasis.↵↵The strain's ability to survive in multiple environments underscores its ecological significance and adaptability. Understanding the traits of E. faecalis strain VV14 can provide insights into its potential roles in different habitats, including its interactions with other microorganisms and its contributions to the microbiome's overall function and stability." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPTZ00000000.1 Bac0018961 Enterococcus faecium strain VV11 "Enterococcus faecium strain VV11 is a Gram-positive cocci that exhibits a facultative anaerobic metabolism. This strain is notably isolated from fermented mare milk, a habitat that suggests its potential role in dairy fermentation processes. The spherical shape of E. faecium contributes to its characteristic arrangement in pairs or chains, which is typical of this genus.↵↵As a facultative anaerobe, E. faecium strain VV11 possesses the ability to thrive in both aerobic and anaerobic environments, allowing it to adapt to the variable conditions present in fermentation processes. Its presence in fermented mare milk highlights its potential utility in the dairy industry, particularly in the production of novel fermented products that may offer unique flavor profiles and nutritional benefits.↵↵The ability of E. faecium to inhabit diverse environments, including those rich in lactose such as mare milk, may suggest its adaptability and resilience in varying ecological niches. This adaptability might also facilitate its application in probiotic formulations or as a starter culture in fermentation, contributing to the development of functional foods while furthering our understanding of microbial interactions within dairy ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUA00000000.1 Bac0018962 Enterococcus faecalis strain VV10 "Enterococcus faecalis strain VV10 is a Gram-positive cocci that exhibits facultative anaerobic metabolism and is classified as a chemoorganotroph, utilizing organic compounds for energy. This strain does not form spores and thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting its potential association with warm-blooded hosts. ↵↵E. faecalis is known to inhabit diverse environments, indicating its ecological versatility; it has been isolated from various habitats, including the gastrointestinal tract of humans and animals, as well as environmental sources such as soil and water. This adaptability may contribute to its persistence in both clinical and non-clinical settings. The strain's ability to grow in the presence of oxygen as well as in its absence allows it to occupy a wide range of ecological niches, enhancing its survival and proliferation under varying conditions.↵↵The metabolic flexibility of Enterococcus faecalis strain VV10, combined with its nonsporulating nature, may provide insights into its resilience in fluctuating environments and its role in microbial communities. Understanding these traits is crucial for further studies on its ecological interactions and potential applications in biotechnology or microbiome research." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPUB00000000.1 Bac0018963 Enterococcus faecium strain TV98 "Enterococcus faecium strain TV98 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic characteristics, allowing it to adapt to varying oxygen levels in its environment. The presence of Enterococcus faecium in fermented mare milk suggests a potential role in the fermentation process, contributing to the flavor and preservation of this traditional dairy product.↵↵As a member of the Enterococcus genus, strain TV98 may possess the ability to withstand challenging environmental conditions, which is typical of many species within this group. The adaptation to a dairy environment highlights the strain's potential involvement in microbiological processes relevant to food science and fermentation technology. Understanding the specific functions and interactions of Enterococcus faecium strain TV98 in fermented mare milk could provide insights into its contribution to the unique sensory properties of the product, as well as its potential benefits in maintaining microbial diversity within this niche habitat." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUD00000000.1 Bac0018964 Enterococcus faecium strain TV83 "Enterococcus faecium strain TV83 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. As a member of the Enterococcus genus, E. faecium is characterized by its spherical shape and ability to grow in diverse conditions, which may contribute to its prevalence in fermented dairy products.↵↵The fermentation process of mare milk involves complex microbial interactions, and E. faecium strain TV83 likely plays a role in the development of the flavor and texture of the final product. Its adaptability to both aerobic and anaerobic conditions enables it to survive in fluctuating environments, suggesting a potential role in the fermentation process where oxygen availability can change. ↵↵Furthermore, the presence of E. faecium in fermented mare milk may offer insights into the microbial ecology of this habitat, particularly in terms of symbiotic relationships with other microorganisms involved in fermentation. This strain's ability to thrive in a niche environment highlights its significance in dairy fermentation and provides a valuable model for studying microbial adaptation and the dynamics of fermented foods." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUG00000000.1 Bac0018965 Enterococcus faecium strain TV82 "Enterococcus faecium strain TV82 is a Gram-positive coccus that demonstrates facultative anaerobic growth. This strain is notably isolated from fermented mare milk, indicating its potential role in dairy fermentation processes. The coccal shape of Enterococcus faecium allows it to occur singly, in pairs, or in short chains, which may facilitate its survival and adaptation in various environments, particularly in the complex matrix of fermented products.↵↵As a facultative anaerobe, Enterococcus faecium strain TV82 can thrive in both aerobic and anaerobic conditions, providing it with metabolic flexibility that is advantageous in the variable environments encountered during fermentation. This adaptability may enhance its competitive edge against other microbial populations in fermented mare milk, contributing to the unique flavor profile and preservation of the product.↵↵The presence of Enterococcus faecium in fermented mare milk highlights its potential utility in traditional dairy fermentation, suggesting that it may play a significant role in the development of specific sensory attributes associated with this product. Furthermore, its ability to thrive in a high-lactate environment may reflect its adaptation strategies in dairy matrices, which can be of interest for both microbiological studies and the dairy industry. Overall, Enterococcus faecium strain TV82 exemplifies the complex interactions of lactic acid bacteria in fermented foods, underscoring its importance in the microbiota of dairy fermentation ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUH00000000.1 Bac0018966 Enterococcus faecium strain TV76 "Enterococcus faecium strain TV76 is a Gram-positive coccus that exhibits a facultative anaerobic metabolism. This strain has been isolated from fermented mare milk, indicating its potential role in dairy fermentation processes. As a member of the Enterococcus genus, E. faecium is known for its resilience and ability to thrive in various environments, which is exemplified by its presence in fermented food products. ↵↵The morphology of this microbe as cocci suggests a spherical shape, which is characteristic of the Enterococcus genus. The facultative anaerobic nature of strain TV76 allows it to grow in both the presence and absence of oxygen, further enhancing its adaptability to different fermentation conditions. This adaptability may contribute to its successful colonization in fermented mare milk, where variations in oxygen levels can occur during the fermentation process.↵↵The presence of Enterococcus faecium strain TV76 in fermented mare milk not only highlights its potential utility in probiotic applications but also suggests a symbiotic relationship with the microbial community present in this unique habitat. The fermentation of mare milk has cultural significance in several regions, and the role of E. faecium strain TV76 may extend beyond mere fermentation to influencing the overall sensory and nutritional properties of the final dairy product. This aspect emphasizes the ecological importance of E. faecium in traditional dairy practices and its potential contributions to food microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUM00000000.1 Bac0018967 Enterococcus faecium strain TV75 "Enterococcus faecium strain TV75 is a Gram-positive cocci that thrives in anaerobic conditions, making it a facultative anaerobe. This strain has been isolated from fermented mare milk, suggesting a potential role in the fermentation process of dairy products derived from horses. The presence of Enterococcus faecium in this unique habitat indicates its adaptability and functional capabilities in varied environmental conditions. ↵↵The Gram-positive nature of strain TV75 suggests a thicker peptidoglycan layer in its cell wall, which could contribute to its resilience in fermentation environments. Additionally, the cocci shape of this microbe is characteristic of the Enterococcus genus, which is known for its ability to withstand harsh conditions, including high salinity and varying pH levels, often encountered in fermented food matrices. ↵↵Understanding the ecological role of Enterococcus faecium strain TV75 in fermented mare milk may provide insights into its metabolic pathways and potential contributions to the flavor and texture of the final dairy product. This strain's ability to function effectively as a facultative anaerobe further emphasizes its importance in the fermentation process, enabling it to thrive in both aerobic and anaerobic environments. The study of such strains can enhance knowledge regarding microbial interactions in traditional fermentation practices and may inform biotechnological applications in dairy fermentation." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUN00000000.1 Bac0018968 Enterococcus faecium strain TV71 "Enterococcus faecium strain TV71 is a Gram-positive, coccoid bacterium that exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. This strain is notably isolated from fermented mare milk, indicating its potential role in dairy fermentation processes and its adaptation to this specific habitat. ↵↵As a member of the Enterococcus genus, E. faecium is characterized by its resilience and ability to survive in diverse environmental conditions. The strain's coccal shape contributes to its unique morphology and may play a role in its interactions within the fermented milk ecosystem. The facultative anaerobic nature of strain TV71 suggests that it can utilize oxygen when available but can also ferment substrates in the absence of oxygen, which is advantageous in the variable oxygen conditions typically found in fermentation environments. ↵↵The presence of E. faecium strain TV71 in fermented mare milk highlights the potential for this bacterium to contribute to the flavor development and texture of such dairy products. Furthermore, understanding its metabolic capabilities could provide insights into its role in the fermentation process, potentially enhancing the quality and safety of fermented dairy products. This ecological niche underscores the importance of E. faecium in traditional dairy fermentation, where it may interact with other microbial species to shape the overall characteristics of the final product." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUP00000000.1 Bac0018969 Enterococcus faecium strain TV57 "Enterococcus faecium strain TV57 is a Gram-positive, cocci-shaped bacterium that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic metabolism, allowing it to grow in both the presence and absence of oxygen, which may contribute to its adaptability in various environments. ↵↵As a member of the Enterococcus genus, E. faecium strain TV57 is part of a group of bacteria that are often studied for their role in fermentation processes and their potential applications in food production. The strain's association with fermented mare milk suggests a potential role in dairy fermentation, where it may influence the flavor and texture of the final product. Furthermore, the ability to survive in anaerobic conditions could provide insights into its metabolic capabilities and interactions within the microbial community present in fermented dairy products.↵↵This ecological role highlights the importance of Enterococcus faecium strain TV57 not only as a participant in traditional fermentation processes but also as a model organism for studying the dynamics of microbial ecosystems in dairy environments. Understanding its traits could have implications for both food science and the development of fermentation technologies." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUT00000000.1 Bac0018970 Enterococcus faecium strain TV56 "Enterococcus faecium strain TV56 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism. This strain has been isolated from fermented mare milk, indicating its adaptability to a dairy environment where both aerobic and anaerobic conditions may be present. The ability to thrive in such a habitat suggests that E. faecium strain TV56 may play a role in the fermentation process, potentially contributing to the flavor and preservation of the milk through lactic acid production. ↵↵Given its isolation from fermented mare milk, it is plausible that Enterococcus faecium strain TV56 possesses specific metabolic pathways that enable it to efficiently utilize lactose and other carbohydrates found in this substrate. The strain's capacity to survive and flourish in a dairy milieu also raises interesting questions about its interactions with other microbial communities present during fermentation, which could influence the overall microbial dynamics and the quality of the fermented product.↵↵Overall, the unique habitat of Enterococcus faecium strain TV56 provides insight into its ecological niche and potential contributions to the dairy fermentation process, highlighting the importance of specific strains in the production of fermented foods and their roles in traditional food practices." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUU00000000.1 Bac0018971 Enterococcus faecium strain TV54 "Enterococcus faecium strain TV54 is a Gram-positive cocci bacterium that thrives in fermented mare milk, showcasing its adaptability to specific dairy environments. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, which allows it to survive in various conditions encountered during the fermentation process. ↵↵The unique habitat of E. faecium strain TV54, particularly its association with mare milk, suggests a specialized role in the fermentation ecosystem of this substrate. This environment may facilitate interactions with other microbial species present during the fermentation process, potentially contributing to the development of distinct flavor profiles and nutritional characteristics of the fermented product. ↵↵The ability of Enterococcus faecium strain TV54 to maintain metabolic flexibility under varying oxygen levels is particularly significant. This trait not only aids in its survival and growth in fluctuating environmental conditions but may also influence its utility in probiotic applications or as a starter culture in dairy fermentation. The ecological role of this strain within fermented mare milk systems highlights the importance of specific microbial interactions in dairy production and the potential for harnessing such strains for enhanced food processing outcomes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUW00000000.1 Bac0018972 Enterococcus faecium strain TV49 "Enterococcus faecium strain TV49 is a Gram-positive, cocci-shaped bacterium that thrives as a facultative anaerobe. This strain has been isolated from fermented mare milk, illustrating its role within specific dairy fermentation processes. The ability to grow in both aerobic and anaerobic conditions allows E. faecium strain TV49 to adapt to varying environmental oxygen levels, which is advantageous for its survival in diverse habitats, including those rich in organic matter, such as fermented dairy products.↵↵The fermentation of mare milk is a complex biochemical process, and the presence of E. faecium strain TV49 suggests that it may contribute to the development of unique flavor profiles and textural characteristics in the final product. As a member of the Enterococcus genus, this strain is likely involved in the maintenance of microbial balance within the fermentation ecosystem, potentially influencing the presence of other microbial species and the overall quality of the fermented product.↵↵Understanding the specific traits and ecological roles of strains like E. faecium TV49 can provide insights into traditional fermentation practices and the biotechnological applications of lactic acid bacteria. Given its habitat, further exploration of this strain may reveal its potential utility in dairy fermentation and the development of novel probiotic products, emphasizing the importance of indigenous microbial communities in food science." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPUZ00000000.1 Bac0018973 Enterococcus faecalis strain TV46 "Enterococcus faecalis strain TV46 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C and utilizes organic compounds as a chemoorganotrophic energy source. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. Enterococcus faecalis is known for its versatility in habitat, being found in a variety of ecological niches, which may include the gastrointestinal tracts of humans and animals, as well as in environmental sources like soil and water.↵↵The coccoid morphology of strain TV46 suggests a potential role in various biological processes, particularly those associated with organic matter decomposition in its habitats. Its facultative anaerobic nature allows it to adapt to fluctuating oxygen levels, which may contribute to its resilience in diverse environments. Given these traits, Enterococcus faecalis strain TV46 may play a crucial role in nutrient cycling and microbial community dynamics, particularly in environments where organic substrates are present. Understanding the ecological functions of this strain can provide insights into its interactions within microbiomes and its potential applications in biotechnology or medicine." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPVC00000000.1 Bac0018974 Enterococcus faecium strain TV44 "Enterococcus faecium strain TV44 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to adapt to varying oxygen conditions within its environment. The ability to ferment lactose and other carbohydrates makes it well-suited for survival in dairy products, where it may contribute to the complex microbial community involved in fermentation processes.↵↵As a member of the Enterococcus genus, strain TV44 shares common traits with closely related species, yet its specific adaptation to mare milk fermentation highlights a niche ecological role. The fermentation of mare milk not only serves as a substrate for this strain but may also influence the flavor and preservation of the product. The presence of Enterococcus faecium in fermented dairy products can be indicative of specific microbial interactions that occur during fermentation, which may affect the overall quality and safety of the final product.↵↵Understanding the characteristics of Enterococcus faecium strain TV44 can provide insights into the dynamics of microbial populations in fermented foods, potentially informing practices in food microbiology and fermentation technology. Further research could explore its metabolic pathways and interactions with other microorganisms in mare milk, offering a deeper understanding of its functional roles in dairy fermentation systems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPVE00000000.1 Bac0018975 Enterococcus faecium strain TV43 "Enterococcus faecium strain TV43 is a Gram-positive coccus that has been isolated from fermented mare milk, indicating its potential role in dairy fermentation processes. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its ability to ferment carbohydrates and contribute to the sensory attributes of fermented dairy products may be significant for the development of unique flavors and textures in mare milk products.↵↵The presence of Enterococcus faecium in fermented mare milk suggests that it could play a role in the microbiota of this niche, potentially affecting the preservation and safety of the product through competitive inhibition of spoilage organisms. Given that Enterococcus species are known for their resilience in various environments, strain TV43's adaptability to fluctuating oxygen levels may also confer advantages in the fermentation process, influencing the dynamics of microbial communities.↵↵Furthermore, the isolation of this strain from a specific habitat highlights the ecological importance of Enterococcus faecium in traditional food production systems. Understanding its functional traits can provide insights into the microbial interactions within fermented beverages, emphasizing the significance of indigenous microbes in shaping the quality and characteristics of fermented foods." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPVF00000000.1 Bac0018976 Enterococcus faecium strain TV42 "Enterococcus faecium strain TV42 is a Gram-positive cocci that has been isolated from fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The ability to grow in fermented milk underscores its potential role in dairy fermentation processes, where it may contribute to flavor development and preservation of the product.↵↵Enterococcus faecium is known for its resilience in various environments, which is reflected in strain TV42's successful adaptation to the unique conditions of fermented mare milk. The strains within this species are often found in association with a variety of ecological niches, suggesting a versatile metabolic capability that could be harnessed in food biotechnology. ↵↵Notably, the fermentation of mare milk, a traditional practice in certain cultures, offers insights into the microbial dynamics involved in dairy fermentation. The presence of E. faecium strain TV42 in this habitat suggests that it may play a role in the microbial community structure, potentially influencing the taste and texture of the final product. Further studies on this strain could elucidate its contributions to the fermentation process and its interactions with other microorganisms in fermented dairy environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPVG00000000.1 Bac0018977 Enterococcus faecium strain TV41 "Enterococcus faecium strain TV41 is a Gram-positive, cocci-shaped bacterium classified within the genus Enterococcus. This strain is predominantly found in fermented mare milk, a habitat that reflects its association with dairy fermentation processes. As a facultative anaerobe, E. faecium strain TV41 possesses the metabolic versatility to thrive in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within its natural habitat.↵↵The ability to thrive in fermented mare milk suggests that E. faecium strain TV41 may play a role in the fermentation process, potentially contributing to the flavor and preservation of this traditional dairy product. Its presence in such a niche habitat indicates a specialized adaptation to the unique biochemical conditions of mare milk, which may include specific nutrient availability and competitive dynamics with other microbial inhabitants.↵↵Given its ecological niche, further investigation into the fermentation characteristics and metabolic pathways of Enterococcus faecium strain TV41 could provide insights into the broader implications of lactic acid bacteria in dairy fermentation. Understanding its role in this ecosystem may also shed light on the potential applications of this strain in food science and biotechnology, particularly in the development of fermented products that rely on beneficial microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPVH00000000.1 Bac0018978 Enterococcus faecalis strain TV33 "Enterococcus faecalis strain TV33 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C. As a facultative anaerobe, this strain is capable of utilizing oxygen for respiration but can also grow in its absence, allowing it to inhabit various environments. Enterococcus faecalis is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which further supports its adaptability to diverse habitats.↵↵The strain's ability to grow in multiple habitats suggests a versatile ecological role, potentially allowing it to persist in both human-associated and environmental niches. Its nonsporulating nature may limit its survival under extreme conditions compared to sporulating bacteria; however, its facultative anaerobic metabolism enables it to exploit a wide range of organic substrates, which may enhance its resilience in fluctuating environments.↵↵In summary, Enterococcus faecalis strain TV33 exemplifies a highly adaptable microbe with significant metabolic flexibility, which may contribute to its prevalence in various ecological contexts. This adaptability underscores the importance of Enterococcus species in microbial communities, where they can play roles in nutrient cycling and potentially interact with other microorganisms in complex ways." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPVJ00000000.1 Bac0018979 Enterococcus faecalis strain TV32 "Enterococcus faecalis strain TV32 is a Gram-positive, nonsporulating coccus that thrives at an optimal temperature of 37.0°C. As a facultative anaerobe, this strain can metabolize in both the presence and absence of oxygen, demonstrating versatility in various environments. E. faecalis is known to be a chemoorganotroph, utilizing organic compounds as energy sources, which allows it to adapt to diverse habitats.↵↵This strain's ability to grow in multiple environments highlights its ecological resilience and potential interactions with various microbial communities. The facultative anaerobic nature of E. faecalis strain TV32 suggests that it can occupy niches where oxygen levels fluctuate, contributing to its survival in both aerobic and anaerobic conditions. Such adaptability may facilitate its role in the microbiota of the gastrointestinal tract, where it can coexist with other microbial species and participate in the decomposition of organic matter.↵↵In summary, E. faecalis strain TV32 exemplifies the characteristics of a highly adaptable microbe, capable of thriving in a range of ecological contexts while utilizing organic matter for energy. This versatility underscores the importance of Enterococcus species in both environmental microbiology and potential biotechnological applications." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPVK00000000.1 Bac0018980 Enterococcus faecalis strain TV2 "Enterococcus faecalis strain TV2 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, which enables it to inhabit a variety of ecological niches. The ability to grow in both aerobic and anaerobic environments suggests that Enterococcus faecalis strain TV2 is well-adapted to diverse conditions, potentially allowing it to colonize multiple habitats within the human microbiome and other environments.↵↵This strain's versatility in energy acquisition and oxygen utilization reflects a broader ecological strategy that may contribute to its persistence in fluctuating environments. Moreover, the presence of Enterococcus faecalis in various habitats underscores its importance as a member of microbial communities, where it can play roles in nutrient cycling and interactions with other microorganisms. Such traits make Enterococcus faecalis strain TV2 a notable organism for further study in the context of microbial ecology and its implications for health and disease." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPVM00000000.1 Bac0018981 Enterococcus faecium strain TV20 "Enterococcus faecium strain TV20 is a Gram-positive cocci that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its niche. The ability to ferment lactose and other carbohydrates is characteristic of Enterococcus species, and it may contribute to the fermentation process in mare milk, influencing the flavor and preservation of the product.↵↵The fermentation of mare milk by Enterococcus faecium strain TV20 not only highlights its role in dairy microbiology but also suggests potential implications for the development of probiotic applications or functional foods derived from fermented equine products. The ecological niche occupied by this strain underscores the importance of microbial diversity in traditional fermentation processes and the potential benefits of harnessing such microorganisms for enhancing food quality and safety." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPVQ00000000.1 Bac0018982 Enterococcus faecium strain TV18 "Enterococcus faecium strain TV18 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels in its environment. As a member of the Enterococcus genus, E. faecium is recognized for its resilience and ability to survive in diverse habitats, which may contribute to its role in the fermentation process of mare milk.↵↵The coccoid shape of strain TV18 is characteristic of the Enterococcus genus, which often forms pairs or short chains. The specific adaptation of E. faecium strain TV18 to fermented mare milk suggests a specialized niche, potentially influencing the biochemical composition and sensory attributes of the fermented product. The presence of this strain in such an environment may also indicate its involvement in the fermentation process, possibly contributing to the flavor profile and preservation of the milk through competitive exclusion of spoilage organisms.↵↵Overall, the ecological role of Enterococcus faecium strain TV18 in fermented mare milk highlights the importance of microbial diversity in traditional dairy products. Its facultative anaerobic nature may enable it to thrive in both aerobic and anaerobic conditions, thereby enhancing its ability to flourish in the dynamic environment of fermentation, where varying oxygen levels can occur. This adaptability underscores the significance of E. faecium strain TV18 in the artisanal production and quality of fermented mare milk." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPVS00000000.1 Bac0018983 Enterococcus faecium strain TV139 "Enterococcus faecium strain TV139 is a Gram-positive, cocci-shaped bacterium that thrives in a unique habitat, specifically fermented mare milk. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, which allows it to adapt to varying environmental conditions within its niche. ↵↵The ability to ferment lactate and other carbohydrates is significant in the context of dairy fermentation, potentially contributing to the flavor and texture of fermented mare milk products. Enterococcus faecium is recognized for its role in various fermentation processes, often enhancing the probiotic qualities of dairy products. ↵↵Given its specific association with fermented mare milk, Enterococcus faecium strain TV139 may play a crucial role in the microbial dynamics of this environment, potentially influencing the overall quality and safety of the fermented product. The unique ecological niche of this strain suggests it may possess specialized metabolic capabilities that enable it to thrive in the competitive environment of milk fermentation. This highlights the importance of understanding microbial diversity in traditional fermentation practices, as such strains could be integral to the development of novel dairy products or the enhancement of existing fermentation processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPWB00000000.1 Bac0018984 Enterococcus faecium strain TV137 "Enterococcus faecium strain TV137 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. This strain is classified within the Enterococcus genus, which is known for its adaptability to various environments. As a facultative anaerobe, E. faecium strain TV137 can grow in both aerobic and anaerobic conditions, allowing it to effectively utilize the fermentation processes that occur in its natural habitat.↵↵The ability of E. faecium strain TV137 to survive in fermented mare milk suggests that it may play a role in the complex microbial community associated with dairy fermentation. This environment is characterized by specific pH levels, nutrient availability, and the presence of other microorganisms, all of which may influence the metabolic activities of this strain. Additionally, the capacity of Enterococcus species to tolerate various stresses, including changes in pH and osmotic pressure, further underscores its potential to contribute to the fermentation process and the development of unique flavor profiles in dairy products.↵↵Further investigation into the biochemical pathways and interactions of E. faecium strain TV137 within fermented mare milk could provide valuable insights into its role in food ecosystems and its potential applications in dairy fermentation technology. The strain's adaptability and growth characteristics may also suggest potential uses in probiotic formulations or as a starter culture in the production of traditional fermented dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPWD00000000.1 Bac0018985 Enterococcus faecalis strain TV135 "Enterococcus faecalis strain TV135 is a Gram-positive coccus known for its facultative anaerobic metabolism and ability to utilize organic compounds as a chemoorganotroph. This strain thrives optimally at a temperature of 37.0°C, making it well-suited for growth in warm-blooded hosts, but it is also capable of surviving in a range of environments, indicating a versatile ecological niche. ↵↵As a nonsporulating organism, E. faecalis strain TV135 relies on its ability to adapt to various habitats without entering a dormant state, which is characteristic of many enterococcal species. This trait allows the strain to persist in diverse conditions, potentially contributing to its presence in both clinical and environmental settings. ↵↵The facultative anaerobic nature of E. faecalis TV135 indicates that it can switch between aerobic respiration and fermentation processes depending on the availability of oxygen, which enhances its survival in fluctuating environmental oxygen levels. This metabolic flexibility may facilitate its colonization and persistence in various ecological niches, including the gut microbiota of mammals.↵↵In summary, E. faecalis strain TV135 exemplifies a resilient organism capable of thriving in diverse environments due to its metabolic versatility and adaptability, which highlights the ecological importance of enterococci in both natural and anthropogenic ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPWE00000000.1 Bac0018986 Enterococcus faecium strain TV12 "Enterococcus faecium strain TV12 is a Gram-positive, cocci-shaped bacterium that is primarily found in fermented mare milk. This strain exhibits a facultative anaerobic metabolism, allowing it to grow in both the presence and absence of oxygen. Enterococcus faecium is part of a diverse group of lactic acid bacteria, which are commonly associated with fermented dairy products, highlighting its potential role in fermentation processes.↵↵The ecological niche of Enterococcus faecium strain TV12 in fermented mare milk suggests that it may contribute to the complex microbial community involved in the fermentation process, influencing the flavor, texture, and overall quality of the final product. The ability to thrive in a fermented environment indicates that this strain may possess specific adaptations that enhance its survival and metabolic efficiency under varying oxygen levels. ↵↵Understanding the characteristics of Enterococcus faecium strain TV12 not only provides insight into its role in dairy fermentation but also emphasizes the importance of this organism in traditional fermentation practices, which are crucial for food preservation and the development of unique sensory attributes in fermented products. Further research into its metabolic pathways and interactions within the microbial ecosystem of fermented mare milk may unveil additional functional properties relevant to food science and nutrition." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPWF00000000.1 Bac0018987 Enterococcus faecium strain TV125 "Enterococcus faecium strain TV125 is a Gram-positive coccus that exhibits facultative anaerobic characteristics. This strain is notably isolated from fermented mare milk, suggesting its potential role in dairy fermentation processes. As a member of the Enterococcus genus, E. faecium is known for its ability to thrive in diverse environments, including those with varying oxygen levels, which may facilitate its survival and metabolic versatility in fermented substrates.↵↵The coccal morphology of E. faecium strain TV125 is indicative of its classification within the Enterococcus genus, which is characterized by its spherical shape. The ability to ferment lactose and other sugars in the presence or absence of oxygen may contribute to the flavor and texture profile of fermented mare milk products, highlighting the importance of this strain in traditional fermentation practices.↵↵Furthermore, the isolation of E. faecium strain TV125 from a niche environment such as fermented mare milk underscores its potential role in the development of specific microbial communities associated with dairy fermentation. This relationship may provide insights into the microbiological processes that contribute to the sensory qualities of fermented dairy products, as well as the strain's adaptive strategies in specialized habitats. Understanding the traits of E. faecium strain TV125 can inform further research into its applications in food science and the production of fermented beverages." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPWH00000000.1 Bac0018988 Enterococcus faecium strain TV123 "Enterococcus faecium strain TV123 is a Gram-positive cocci bacterium that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this strain is capable of growing in both aerobic and anaerobic conditions, which may enhance its adaptability to various environments encountered during the fermentation process. ↵↵The ability of Enterococcus faecium strain TV123 to survive and proliferate in fermented mare milk suggests its potential role in the fermentation microbiota, contributing to the development of specific flavor profiles and texture in dairy products. This strain's adaptation to a lactate-rich environment may also indicate its metabolic versatility, allowing it to utilize a range of substrates during fermentation. ↵↵Furthermore, the presence of E. faecium in fermented mare milk underscores the importance of this microbe in traditional dairy practices, where it may play a role in the preservation and safety of the product. Understanding the characteristics and ecological roles of Enterococcus faecium strain TV123 could provide insights into its contributions to food microbiology and the biotechnological applications of lactic acid bacteria in dairy fermentation." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPWI00000000.1 Bac0018989 Enterococcus faecium strain TV118 "Enterococcus faecium strain TV118 is a Gram-positive cocci that thrives in the unique environment of fermented mare milk. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions, which may contribute to its adaptability in various fermentation processes. ↵↵The habitat of E. faecium strain TV118 in fermented mare milk suggests its potential role in dairy fermentation, possibly influencing the flavor profile and preservation of the product. Fermentation processes involving this strain may also highlight its functional properties, which could be beneficial in the production of fermented dairy products.↵↵The ability of E. faecium strain TV118 to thrive in a specific ecological niche like fermented mare milk not only underscores its importance in traditional dairy practices but also suggests potential applications in food biotechnology. Given its resilience as a facultative anaerobe, this strain may serve as a model organism for studying fermentation dynamics and the role of lactic acid bacteria in dairy systems. Further research into its fermentation capabilities and metabolic pathways could reveal insights into the microbial interactions that occur during the fermentation of mare milk, enhancing our understanding of microbial ecology in fermented foods." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPWK00000000.1 Bac0018990 Enterococcus faecium strain TV10 "Enterococcus faecium strain TV10 is a Gram-positive cocci bacterium that exhibits facultative anaerobic growth. This strain is primarily isolated from fermented mare milk, suggesting its adaptation to a dairy environment where it may play a role in fermentation processes. The presence of Enterococcus faecium in such an ecological niche indicates its potential involvement in the development of the characteristic flavors and textures associated with fermented dairy products.↵↵As a facultative anaerobe, strain TV10 can thrive in both aerobic and anaerobic conditions, allowing it to exploit varying environmental oxygen levels, which is beneficial for survival in diverse habitats. The organism's capacity to ferment sugars present in milk may also contribute to its metabolic versatility, enabling it to utilize different substrates for energy production.↵↵Understanding the specific traits of Enterococcus faecium strain TV10 enhances our knowledge of its ecological role in dairy fermentation systems. Its presence in fermented mare milk could indicate a symbiotic relationship with other microbial communities, highlighting the complexity of microbial interactions in food production. This insight into its habitat and growth characteristics may pave the way for further studies on its applications in fermentation technology and potential benefits in dairy science." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPWN00000000.1 Bac0018991 Enterococcus faecalis strain TV105 "Enterococcus faecalis strain TV105 is a Gram-positive, nonsporulating cocci that demonstrates facultative anaerobic metabolism and utilizes organic compounds as its energy source, classifying it as a chemoorganotroph. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions commonly found in mammalian hosts. ↵↵E. faecalis is known to inhabit diverse environments, indicating its versatility and adaptability to various habitats, including the gastrointestinal tracts of humans and other animals, as well as environmental niches such as soil and water. The strain's ability to survive in both aerobic and anaerobic conditions allows it to exploit a wide range of ecological niches, contributing to its persistence in varied environments.↵↵The metabolic flexibility of E. faecalis strain TV105 suggests it may play a significant role in nutrient cycling within its habitats, particularly in organic matter decomposition processes. This trait could be essential in maintaining ecological balance, highlighting the organism's potential impact on microbial communities in both natural and engineered environments. Understanding the ecological roles of enterococci, including strain TV105, provides valuable insights into their contributions to microbiomes and their interactions with other microorganisms." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPWP00000000.1 Bac0018992 Enterococcus faecalis strain IV30 "Enterococcus faecalis strain IV30 is a Gram-positive cocci bacterium that demonstrates a facultative anaerobic metabolism, allowing it to thrive in diverse environments. This strain is nonsporulating and typically exhibits optimal growth at a temperature of 37.0°C, which aligns with the physiological conditions found in many mammalian hosts. As a chemoorganotroph, E. faecalis IV30 utilizes organic compounds as its primary energy source, reflecting its adaptability to multiple habitats.↵↵The versatility of Enterococcus faecalis IV30 in varying oxygen levels suggests its potential role in both aerobic and anaerobic microbial communities. This adaptability may enable it to occupy niches within complex ecosystems, such as the gastrointestinal tract, where fluctuating oxygen availability occurs. The presence of this strain in such habitats could contribute to the microbial diversity and metabolic processes within these environments.↵↵Moreover, the nonsporulating nature of E. faecalis IV30 implies that it relies on alternative survival strategies, such as biofilm formation or competitive interaction with other microorganisms, to persist in its habitats. This characteristic may provide insights into its ecological function and resilience in microbial communities. Overall, Enterococcus faecalis strain IV30 exemplifies the adaptability of enterococci in various ecological settings, underscoring the importance of understanding their role in microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPWT00000000.1 Bac0018993 Enterococcus faecalis strain IV23 "Enterococcus faecalis strain IV23 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism and is categorized as a chemoorganotroph, utilizing organic compounds for energy. This strain thrives optimally at a temperature of 37.0°C, which is consistent with its isolation from warm-blooded hosts and various environments. ↵↵E. faecalis is known to inhabit diverse habitats, including the gastrointestinal tracts of humans and animals, as well as environmental niches such as soil and water. Its facultative anaerobic nature allows it to adapt to both aerobic and anaerobic conditions, contributing to its resilience in fluctuating environments.↵↵The strain's ability to survive and grow in multiple habitats underscores its ecological versatility, which may play a role in its interactions within microbial communities. Understanding the ecological dynamics of Enterococcus faecalis strain IV23 can provide insights into its potential roles in nutrient cycling and its contributions to the microbial diversity in its habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPWV00000000.1 Bac0018994 Enterococcus faecalis strain IV22 "Enterococcus faecalis strain IV22 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism and is classified as a chemoorganotroph, utilizing organic compounds as its energy source. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat preferences, allowing it to inhabit various environments, including the gastrointestinal tracts of mammals and other niche ecosystems.↵↵As a facultative anaerobe, Enterococcus faecalis strain IV22 can grow in both the presence and absence of oxygen, providing it with a versatile ecological adaptability that may facilitate its survival in fluctuating environmental conditions. The strain's ability to utilize a range of organic substrates for energy reflects its metabolic flexibility, potentially contributing to its persistence in diverse habitats.↵↵Moreover, the widespread presence of Enterococcus faecalis, including strain IV22, in various environments suggests a significant role in nutrient cycling, especially in the breakdown of organic material. This characteristic underlines the importance of this strain not only in ecological contexts but also in understanding microbial dynamics within communities, as it may impact the availability of nutrients for other microorganisms in its vicinity." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPWW00000000.1 Bac0018995 Enterococcus faecalis strain IV12 "Enterococcus faecalis strain IV12 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic respiration, allowing it to thrive in diverse environments. This strain is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy, which contributes to its adaptability in various habitats.↵↵Optimal growth for Enterococcus faecalis strain IV12 occurs at 37.0°C, a temperature that aligns with the body temperature of warm-blooded animals, suggesting that this strain may be well-suited for survival in mammalian hosts as well as in environmental settings. The facultative anaerobic nature of this microbe enables it to utilize both aerobic and anaerobic metabolic pathways, facilitating its persistence in fluctuating oxygen levels commonly encountered in natural and clinical environments.↵↵The ability of Enterococcus faecalis strain IV12 to adapt to multiple habitats underscores its ecological versatility, which may play a role in its survival and distribution in both human-associated and environmental microbiomes. This adaptability emphasizes the importance of understanding such strains in the context of microbial ecology, as their presence can influence community dynamics and nutrient cycling in varied ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPWY00000000.1 Bac0018996 Enterococcus faecalis strain EF13-4-31 "Enterococcus faecalis strain EF13-4-31 is a Gram-positive, nonsporulating coccus that functions as a chemoorganotroph, with an optimal growth temperature of 37.0°C. This strain is capable of thriving in various habitats, which reflects its versatility and adaptability to different environmental conditions. As a facultative anaerobe, E. faecalis strain EF13-4-31 can grow in the presence or absence of oxygen, allowing it to exploit a range of ecological niches where oxygen levels may fluctuate.↵↵The ability of E. faecalis to utilize organic compounds as its energy source underscores its role in various microbial ecosystems, where it may participate in nutrient cycling and organic matter decomposition. This strain's adaptation to multiple habitats highlights its ecological significance, particularly in environments such as the gastrointestinal tract of humans and animals, as well as in soil and water systems. Understanding the metabolic capabilities and ecological roles of E. faecalis strain EF13-4-31 can provide insights into its contributions to microbial diversity and function in different ecosystems, as well as its potential interactions with other microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPWZ00000000.1 Bac0018997 Enterococcus faecalis strain 5A-8 "Enterococcus faecalis strain 5A-8 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 37.0°C and exhibits facultative anaerobic metabolism. This strain utilizes organic compounds as a source of energy, classifying it as a chemoorganotroph. Enterococcus faecalis is known for its versatility in occupying diverse habitats, which may include both human and environmental niches.↵↵The Gram-positive nature of strain 5A-8 suggests a robust cell wall structure, characteristic of the Enterococcus genus, which contributes to its resilience in various conditions. The coccal shape and nonsporulating trait are typical of this species, indicating a reliance on vegetative growth rather than spore formation for survival and reproduction. The facultative anaerobic capability allows strain 5A-8 to adapt to fluctuating oxygen levels, enabling it to thrive in both aerobic and anaerobic environments.↵↵Given its energy acquisition strategy and adaptability, Enterococcus faecalis strain 5A-8 may play a significant role in nutrient cycling within its ecological niches. Its presence in multiple habitats underscores its potential as a contributor to microbial community dynamics, where it may interact with other microorganisms, thereby influencing local ecological balances and biogeochemical processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXD00000000.1 Bac0018998 Enterococcus faecalis strain 5A-7 "Enterococcus faecalis strain 5A-7 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C. As a facultative anaerobe, this strain can adapt to both aerobic and anaerobic environments, reflecting its versatile metabolic capabilities as a chemoorganotroph. Enterococcus faecalis is commonly found in various habitats, which may include the gastrointestinal tracts of humans and animals, as well as in soil and aquatic environments. ↵↵The ability of strain 5A-7 to utilize organic compounds for energy underscores its ecological role in nutrient cycling, particularly in environments where organic matter is abundant. This adaptability suggests that Enterococcus faecalis strain 5A-7 may contribute to microbial community dynamics across diverse settings, potentially influencing the degradation of organic materials and the overall health of the microbial ecosystem it inhabits. Given its wide-ranging habitats, understanding the specific interactions of this strain within different environments could provide insights into its ecological contributions and its potential roles in biogeochemical processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXE00000000.1 Bac0018999 Enterococcus faecalis strain 5A-5 "Enterococcus faecalis strain 5A-5 is a Gram-positive cocci that demonstrates facultative anaerobic metabolism and is classified as a chemoorganotroph, utilizing organic compounds for energy. This strain, like other members of the Enterococcus genus, is nonsporulating and thrives optimally at a temperature of 37.0°C, which is consistent with the conditions typically found in mammalian hosts. ↵↵The habitat of Enterococcus faecalis strain 5A-5 is diverse, suggesting its adaptability to various environments, including those found in the gastrointestinal tracts of humans and animals, as well as in soil and water. This versatility may contribute to its ecological success and persistence in different niches.↵↵Understanding the metabolic capabilities and environmental resilience of Enterococcus faecalis strain 5A-5 can provide insights into its role in microbial communities and its interactions within the microbiome. Further studies could elucidate how this strain adapts to fluctuating conditions in its habitats, which may influence not only its survival but also its interactions with other microbial species." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXG00000000.1 Bac0019000 Enterococcus faecalis strain 5A-2 "Enterococcus faecalis strain 5A-2 is a Gram-positive, nonsporulating coccus that thrives at an optimal temperature of 37.0°C. As a facultative anaerobe, this strain can grow in both the presence and absence of oxygen, allowing it to adapt to a variety of environmental conditions. It is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which supports its growth across multiple habitats.↵↵This strain's ability to survive and proliferate in diverse environments underscores its ecological versatility. While Enterococcus faecalis is commonly associated with human and animal intestinal tracts, its adaptability to different habitats suggests a broader ecological role, potentially contributing to nutrient cycling in various environments. The capacity for facultative anaerobic respiration may also enable strain 5A-2 to inhabit microenvironments with fluctuating oxygen levels, highlighting its ecological resilience. Further studies could elucidate the specific roles this strain plays in its habitats and its interactions with other microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXI00000000.1 Bac0019001 Enterococcus faecalis strain 5A-20 "Enterococcus faecalis strain 5A-20 is a Gram-positive, nonsporulating cocci that thrives optimally at 37.0°C and utilizes a chemoorganotrophic metabolism. As a facultative anaerobe, this strain can grow in both aerobic and anaerobic environments, allowing it to inhabit a variety of ecological niches. Its versatile energy utilization indicates a capacity to adapt to different substrates, which may be advantageous for survival in diverse habitats, including the gastrointestinal tracts of mammals and various environmental settings. ↵↵The facultative anaerobic nature of E. faecalis strain 5A-20 suggests that it plays a role in the microbial communities where oxygen availability fluctuates, contributing to the overall microbial dynamics. This adaptability not only enhances its resilience in changing environments but also signifies its potential involvement in biogeochemical cycles, especially in organic matter decomposition, where it may interact with other microorganisms. Understanding the ecological roles of strains like Enterococcus faecalis 5A-20 can provide insights into microbial interactions and their impacts on ecosystem function." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXJ00000000.1 Bac0019002 Enterococcus faecalis strain 5A-19 "Enterococcus faecalis strain 5A-19 is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 37.0°C. As a facultative anaerobe, this strain is capable of utilizing both aerobic and anaerobic metabolic pathways, making it versatile in various environments. It derives its energy through chemoorganotrophic means, indicating a reliance on organic compounds for growth and metabolism.↵↵This strain is part of a broader group of Enterococcus species known for their adaptability to diverse habitats, which may include human and animal intestines, as well as environmental settings such as soil and water. The ability of Enterococcus faecalis to flourish in multiple habitats underscores its ecological resilience and capacity for colonization.↵↵In light of these traits, Enterococcus faecalis strain 5A-19 may play a significant role in microbial communities, particularly in environments where organic substrates are abundant. Its facultative anaerobic nature suggests an ability to contribute to both aerobic and anaerobic processes, potentially influencing nutrient cycling and organic matter decomposition in its habitat. This adaptability highlights the ecological importance of Enterococcus faecalis as a participant in various biogeochemical processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXL00000000.1 Bac0019003 Enterococcus faecalis strain 5A-16 "Enterococcus faecalis strain 5A-16 is a Gram-positive coccus that thrives optimally at 37.0°C and exhibits facultative anaerobic respiration, allowing it to adapt to varying oxygen levels in diverse environments. As a nonsporulating bacterium, this strain relies on chemoorganotrophic metabolism, utilizing organic compounds as its primary energy source. Enterococcus faecalis is known to inhabit multiple ecological niches, which may include human and animal gastrointestinal tracts, as well as various environmental settings.↵↵The ability of strain 5A-16 to function as a facultative anaerobe enables it to survive in both oxygen-rich and low-oxygen environments, potentially facilitating its role in microbial communities where oxygen availability fluctuates. This adaptability may contribute to its persistence and competitiveness in diverse habitats, underscoring its ecological versatility. The strain's metabolic flexibility and ability to thrive at human body temperature highlight its potential significance in both clinical and environmental microbiology. Understanding the ecological interactions and metabolic capabilities of Enterococcus faecalis strain 5A-16 could provide insights into its role within microbial ecosystems and its responses to environmental changes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXN00000000.1 Bac0019004 Enterococcus faecalis strain 5A-13 "Enterococcus faecalis strain 5A-13 is a Gram-positive cocci that exhibits facultative anaerobic characteristics, allowing it to thrive in both aerobic and anaerobic environments. This strain does not undergo sporulation and is categorized as a chemoorganotroph, utilizing organic compounds as its primary energy source. The optimal growth temperature for strain 5A-13 is 37.0°C, which aligns with the typical physiological temperature of warm-blooded hosts, suggesting a potential association with mammalian environments. ↵↵E. faecalis is known to inhabit a diverse range of ecological niches, including the gastrointestinal tracts of humans and animals, as well as various environmental settings. The ability of strain 5A-13 to adapt to multiple habitats underscores its ecological versatility, which may contribute to its persistence in different environments, from clinical settings to natural ecosystems. ↵↵This adaptability to fluctuating oxygen levels and diverse organic substrates highlights the strain's potential role in biogeochemical cycles, particularly in organic matter decomposition and nutrient recycling in various habitats. Further investigation into strain 5A-13 may reveal insights into its ecological interactions and functional capabilities within complex microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXP00000000.1 Bac0019005 Enterococcus faecalis strain 13-9-88 "Enterococcus faecalis strain 13-9-88 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, making it capable of surviving in both aerobic and anaerobic environments. This strain is classified as a chemoorganotroph, utilizing organic compounds as its energy sources, which is characteristic of many enterococci. Its optimal growth temperature is 37.0°C, aligning with the typical mammalian body temperature, suggesting a potential association with mammalian hosts or environments that mirror such thermal conditions.↵↵Enterococcus faecalis is known for its adaptability to a variety of habitats, which may include the gastrointestinal tracts of humans and other animals, as well as environmental niches such as soil and water. This versatility not only allows E. faecalis strain 13-9-88 to thrive in diverse settings but also hints at its potential roles in nutrient cycling and interactions within microbial communities.↵↵An intriguing aspect of this strain is its ability to persist in environments with fluctuating oxygen levels, which may provide insights into its ecological niches. Such adaptability underscores the importance of E. faecalis in ecological frameworks, particularly in the context of gut microbiota dynamics and its contributions to the maintenance of gut homeostasis. Further investigation into strain 13-9-88 could elucidate its specific ecological roles and interactions within its habitats." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXR00000000.1 Bac0019006 Enterococcus faecalis strain 13-9-85 "Enterococcus faecalis strain 13-9-85 is a Gram-positive cocci that exhibits facultative anaerobic metabolism and utilizes organic compounds as a chemoorganotrophic energy source. This strain does not form spores, indicating a reliance on vegetative growth for survival and reproduction. It thrives optimally at 37.0°C, suggesting an adaptation to body temperature, which may reflect its presence in various habitats, including those associated with warm-blooded animals. ↵↵The facultative anaerobic nature of E. faecalis allows it to grow in both aerobic and anaerobic environments, which may contribute to its persistence in diverse ecological niches. This versatility in oxygen utilization underscores its potential adaptability to fluctuating environmental conditions. The strain’s ability to thrive in multiple habitats may also suggest a role in biogeochemical cycles, particularly in the decomposition of organic matter, where it can contribute to nutrient cycling in both terrestrial and aquatic ecosystems. ↵↵Overall, Enterococcus faecalis strain 13-9-85 exemplifies the ecological flexibility of enterococci, enabling them to occupy varied environments and possibly engage in complex interactions with other microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXT00000000.1 Bac0019007 Enterococcus faecalis strain 13-5-45 "Enterococcus faecalis strain 13-5-45 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C, with the ability to utilize a variety of organic compounds as a chemoorganotroph. This strain demonstrates facultative anaerobic respiration, allowing it to adapt to both aerobic and anaerobic environments. Enterococcus faecalis, as a species, is present in diverse habitats, which may include the gastrointestinal tracts of humans and animals, as well as various environmental settings.↵↵The facultative anaerobic nature of strain 13-5-45 suggests a versatile metabolic capacity, enabling it to survive in fluctuating oxygen conditions. This adaptability is critical for its ecological presence in diverse environments, where it can potentially outcompete other microbial populations. The ability to thrive at 37.0°C aligns with its physiological role in warm-blooded hosts, indicating a potential association with host organisms.↵↵Overall, Enterococcus faecalis strain 13-5-45 exemplifies the adaptability and resilience of enterococci, contributing to their prevalence in multiple habitats and their role in complex microbial ecosystems. This strain’s traits may provide insights into its ecological interactions and metabolic strategies in both host-associated and environmental contexts." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXW00000000.1 Bac0019008 Enterococcus faecalis strain 13-4VP "Enterococcus faecalis strain 13-4VP is a Gram-positive cocci bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain does not undergo sporulation and is classified as a chemoorganotroph, utilizing organic compounds as its primary energy source. The optimal growth temperature for strain 13-4VP is 37.0°C, which aligns closely with the human body temperature, suggesting a potential association with warm-blooded hosts or environments that mimic such conditions.↵↵Enterococcus faecalis is known to inhabit diverse ecological niches, including the gastrointestinal tracts of humans and animals, as well as various environmental sources. Its adaptability to multiple habitats is indicative of its versatile metabolic capabilities, allowing it to exploit a range of organic substrates. The presence of this strain in different environments underscores its ecological resilience and potential role in nutrient cycling.↵↵Understanding the physiological traits of Enterococcus faecalis strain 13-4VP enhances our knowledge of its ecological interactions and survival strategies. This strain's ability to function in both oxygen-rich and oxygen-poor environments may contribute to its persistence in various ecosystems, highlighting its significance in microbial community dynamics and potential roles in biogeochemical processes." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXX00000000.1 Bac0019009 Enterococcus faecalis strain 13-4-35 "Enterococcus faecalis strain 13-4-35 is a Gram-positive, nonsporulating coccus that displays facultative anaerobic characteristics and thrives optimally at 37.0°C. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, allowing it to adapt to various environmental conditions. Enterococcus faecalis is often found in diverse habitats, indicating its versatility and resilience in fluctuating environments.↵↵The strain's ability to grow in both aerobic and anaerobic conditions suggests it plays a significant role in different biological processes, including fermentation and nutrient cycling within its habitat. This adaptability may also facilitate its survival in various ecological niches, from soil to the gastrointestinal tracts of humans and animals. ↵↵The presence of Enterococcus faecalis strain 13-4-35 across multiple habitats highlights its ecological importance and potential interactions with other microorganisms. Such interactions could influence microbial community dynamics, nutrient availability, and overall ecosystem health. While specific ecological roles of this strain require further investigation, its traits certainly position it as a notable organism within the diverse microbial landscape." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPXY00000000.1 Bac0019010 Enterococcus faecalis strain 13-2-19 "Enterococcus faecalis strain 13-2-19 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, indicating its ability to grow in both aerobic and anaerobic environments. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the conditions found in the mammalian gut, where Enterococcus species are commonly encountered. As a chemoorganotroph, E. faecalis strain 13-2-19 utilizes organic compounds as its energy source, which further supports its role in diverse habitats, including those associated with human and animal microbiomes.↵↵The ability of E. faecalis to occupy multiple habitats suggests a versatile ecological niche, potentially contributing to its persistence and adaptability in various environments. This strain's metabolic capabilities may facilitate its survival and proliferation in complex microbial communities, where it can engage in interactions with other microorganisms. Furthermore, the facultative anaerobic nature of this strain highlights its ecological flexibility, allowing it to thrive in fluctuating oxygen conditions, which are characteristic of many environments, including the gastrointestinal tract. Overall, the traits of Enterococcus faecalis strain 13-2-19 underscore its potential role in microbial ecology, particularly within environments rich in organic substrates where it may contribute to nutrient cycling and microbiota stability." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPYC00000000.1 Bac0019011 Enterococcus faecalis strain 13-1-10 "Enterococcus faecalis strain 13-1-10 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, which allows it to adapt to diverse habitats. The ability to grow in both the presence and absence of oxygen suggests that E. faecalis strain 13-1-10 can occupy various ecological niches, including those that experience fluctuating oxygen levels.↵↵Enterococcus faecalis is known for its resilience in various environments, including human and animal gastrointestinal tracts, as well as soil and water. This adaptability, combined with its metabolic versatility, positions E. faecalis strain 13-1-10 as a significant member of microbial communities, potentially influencing nutrient cycles and interactions with other microorganisms. The strain's capacity to thrive in multiple habitats may also reflect its evolutionary success in colonizing different ecological niches. Further investigation into the specific roles and interactions of E. faecalis strain 13-1-10 within its environments could provide valuable insights into its ecological impact and functional contributions to the microbiome." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPYH00000000.1 Bac0019012 Enterococcus faecalis strain 13-1-09 "Enterococcus faecalis strain 13-1-09 is a gram-positive, nonsporulating coccus that thrives optimally at 37.0°C. This strain is classified as a chemoorganotroph, indicating its ability to derive energy from organic compounds, which supports its growth in diverse habitats. Enterococcus faecalis is known for its facultative anaerobic nature, allowing it to survive and proliferate in both aerobic and anaerobic environments. ↵↵The versatility of strain 13-1-09 in various habitats suggests a broad ecological adaptability, contributing to its presence in multiple ecological niches. The ability to utilize organic substrates for energy may enable this strain to play a role in various biogeochemical cycles, particularly in environments rich in organic matter. The characteristics of this strain may also influence its interactions within microbial communities, potentially participating in symbiotic or competitive relationships with other microorganisms in its habitat. ↵↵Overall, Enterococcus faecalis strain 13-1-09 exemplifies the adaptability of certain bacterial species to various environmental conditions, highlighting its potential significance in both ecological and clinical microbiology contexts." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPYI00000000.1 Bac0019013 Enterococcus faecalis strain 13-1-08 "Enterococcus faecalis strain 13-1-08 is a Gram-positive cocci that exhibits a facultative anaerobic metabolism and thrives optimally at 37.0°C. This strain is characterized as nonsporulating and functions as a chemoorganotroph, utilizing organic compounds as its energy source. E. faecalis is known to inhabit diverse environments, suggesting its ability to adapt to various ecological niches. ↵↵The capacity for facultative anaerobiosis allows strain 13-1-08 to survive and grow in both the presence and absence of oxygen, reflecting a metabolic versatility that may contribute to its resilience in fluctuating conditions. The nonsporulating nature of this strain indicates that it relies on other survival mechanisms rather than forming spores to endure unfavorable environments. This trait, combined with its ability to utilize organic substrates, positions E. faecalis strain 13-1-08 as a microbe capable of thriving in complex microbial communities, where competition for resources is prevalent. ↵↵Understanding the specific ecological roles and interactions of E. faecalis strain 13-1-08 within its habitats could provide valuable insights into its contributions to microbial diversity and ecosystem functioning. The metabolic pathways utilized by this strain may also influence nutrient cycling in its environments, highlighting the importance of Enterococcus species in maintaining ecological balance." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPYL00000000.1 Bac0019014 Enterococcus faecium strain 12-9VP "Enterococcus faecium strain 12-9VP is a Gram-positive coccus that exhibits facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. This strain has been isolated from fermented mare milk, suggesting a niche adaptation to dairy fermentation processes, where it may play a role in flavor development and preservation of the product. ↵↵The coccal shape of E. faecium strain 12-9VP is characteristic of the genus Enterococcus, which is known for its resilience in diverse habitats, particularly in fermented foods. The ability to metabolize various substrates under different oxygen conditions allows this strain to effectively contribute to the fermentation process, potentially enhancing the organoleptic properties of mare milk products. ↵↵Interestingly, the presence of E. faecium in fermented mare milk highlights its potential role in traditional dairy fermentation practices, which have been integral to various cultures. This insight underscores the importance of such microorganisms in food science, particularly in the context of developing and maintaining unique fermented products that may have both cultural and nutritional significance." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPYQ00000000.1 Bac0019015 Enterococcus faecalis strain 12-8-01 "Enterococcus faecalis strain 12-8-01 is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic metabolism and functions as a chemoorganotroph. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting a potential association with warm-blooded hosts. As a nonsporulating organism, Enterococcus faecalis strain 12-8-01 relies on its ability to adapt to various habitats, which may include diverse environments ranging from soil and water to the gastrointestinal tracts of mammals.↵↵The facultative anaerobic nature of this strain allows it to survive and proliferate in both oxygen-rich and oxygen-poor conditions, contributing to its ecological versatility. Given its metabolic capabilities, E. faecalis strain 12-8-01 can utilize a variety of organic compounds for energy, suggesting its role in nutrient cycling within its habitats. This adaptability not only facilitates its survival in fluctuating environments but may also influence its interactions with other microbial communities.↵↵The ability of Enterococcus faecalis strain 12-8-01 to thrive in multiple habitats while maintaining metabolic flexibility highlights its potential ecological significance. Such traits may enable it to play a role in the microbial dynamics of its environment, possibly influencing nutrient availability and microbial community structure through its metabolic activities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPYS00000000.1 Bac0019016 Enterococcus faecium strain 12-7VP "Enterococcus faecium strain 12-7VP is a Gram-positive, cocci-shaped bacterium that exhibits facultative anaerobic growth, primarily inhabiting fermented mare milk. This strain demonstrates the characteristic resilience and adaptability of Enterococcus species, allowing it to thrive in varying oxygen conditions, which is relevant for its survival in the complex microbial ecosystem of fermented dairy products.↵↵The presence of Enterococcus faecium in fermented mare milk suggests a potential role in the fermentation process, possibly contributing to the development of flavor and texture in the final product. Its ability to grow in both aerobic and anaerobic environments may enhance its functional capabilities within the fermentation matrix, promoting the breakdown of lactose and other substrates typically found in milk.↵↵Moreover, the ecological significance of Enterococcus faecium strain 12-7VP may extend to its interactions with other microbial inhabitants of fermented mare milk, potentially influencing the overall microbial community structure and dynamics. The strain's adaptation to a specific niche highlights the importance of studying microbial diversity within traditional fermentation processes, as it may reveal insights into both food science and the preservation of microbial cultures. Understanding such interactions could pave the way for harnessing beneficial strains in dairy fermentation and improving the quality of fermented products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPYT00000000.1 Bac0019017 Enterococcus faecalis strain 12-7-68 "Enterococcus faecalis strain 12-7-68 is a Gram-positive, nonsporulating coccus that operates as a facultative anaerobe, demonstrating its versatility in various environments. This strain thrives optimally at 37.0°C, suggesting an adaptation to physiological temperatures typical of warm-blooded hosts. As a chemoorganotroph, E. faecalis strain 12-7-68 utilizes organic compounds as its energy source, allowing it to exploit a broad spectrum of carbon sources within its multiple habitats.↵↵The coccoid morphology of this strain contributes to its survival and persistence in diverse ecological niches, including the gastrointestinal tracts of humans and animals, as well as in various environmental settings. Given its metabolic capabilities and oxygen tolerance, E. faecalis strain 12-7-68 may play a role in nutrient cycling, particularly in environments where organic matter is abundant. ↵↵This strain's adaptability to both aerobic and anaerobic conditions could also facilitate its resilience in fluctuating environments, underscoring its ecological significance and potential interactions with other microbial communities. Understanding the traits of E. faecalis strain 12-7-68 may further illuminate its role in various ecosystems and its capacity to thrive under different environmental pressures." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPYU00000000.1 Bac0019018 Enterococcus faecalis strain 12-1VP "Enterococcus faecalis strain 12-1VP is a Gram-positive, nonsporulating coccus that thrives at an optimal temperature of 37.0°C and exhibits facultative anaerobic respiration. As a chemoorganotroph, this strain derives its energy from organic compounds, which allows it to inhabit a diverse range of environments. Its ability to adapt to multiple habitats underlines its ecological versatility, enabling it to survive in both aerobic and anaerobic conditions.↵↵The coccoid morphology of Enterococcus faecalis strain 12-1VP contributes to its resilience in various ecological niches, where it can play a role in nutrient cycling and microbial community dynamics. This strain's metabolic flexibility may enhance its survival in fluctuating environmental conditions, reflecting the adaptive strategies of Enterococcus species generally. Understanding these traits can provide insights into the ecological roles of Enterococcus faecalis in different environments, such as its potential contributions to nutrient degradation and energy flow in microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPYZ00000000.1 Bac0019019 Enterococcus faecium strain 10-9A "Enterococcus faecium strain 10-9A is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this strain has the metabolic flexibility to grow in both the presence and absence of oxygen, which may contribute to its ability to survive and proliferate in diverse environmental conditions associated with dairy fermentation processes. ↵↵The cocci shape of Enterococcus faecium strain 10-9A is characteristic of the Enterococcus genus, which is known for its resilience and adaptability. The strain's association with fermented mare milk suggests a potential role in the fermentation process, possibly aiding in the development of flavor and texture in dairy products. ↵↵Furthermore, the presence of this strain in a specific niche like fermented mare milk highlights its potential for use in the dairy industry, particularly in the production of traditional fermented products. The ecological insight here is that Enterococcus faecium strain 10-9A may play a significant role in the microbial community dynamics of fermented mare milk, influencing both the fermentation process and the final product characteristics. This underscores the importance of understanding strain-specific traits in the context of food microbiology and fermentation science." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPZE00000000.1 Bac0019020 Enterococcus faecalis strain 10-6-50 "Enterococcus faecalis strain 10-6-50 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, allowing it to adapt to various ecological niches. Enterococcus faecalis is known to inhabit multiple environments, which may include the gastrointestinal tracts of humans and other animals, as well as soil and water systems. ↵↵The ability of strain 10-6-50 to grow under both aerobic and anaerobic conditions suggests a versatile metabolic capability, enabling it to exploit a range of substrates in diverse habitats. This adaptability may contribute to its persistence in differing environments and its role in microbial communities. Additionally, the strain's coccoid shape is characteristic of the Enterococcus genus, which typically exhibits resilience under varying environmental stresses.↵↵Understanding the ecological roles of Enterococcus faecalis strain 10-6-50 can provide insights into its potential interactions within microbial ecosystems, particularly in nutrient cycling and symbiotic relationships. The strain's widespread presence across different habitats highlights its significance in both ecological and possibly biotechnological contexts, warranting further investigation into its functional roles in these environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPZG00000000.1 Bac0019021 Enterococcus faecalis strain 10-6-46 "Enterococcus faecalis strain 10-6-46 is a Gram-positive, nonsporulating cocci that thrives optimally at 37.0°C and exhibits facultative anaerobic metabolism. As a chemoorganotroph, this strain utilizes organic compounds as energy sources, which allows it to adapt to a variety of habitats. ↵↵The ability to grow in both aerobic and anaerobic conditions suggests that Enterococcus faecalis strain 10-6-46 can occupy diverse ecological niches, potentially including environments with fluctuating oxygen levels. This versatility may contribute to its persistence in different habitats, including the gastrointestinal tracts of humans and animals, as well as in soil and aquatic systems.↵↵The strain's nonsporulating nature indicates that it relies on other mechanisms for survival under unfavorable conditions, which could involve forming biofilms or entering a viable but non-culturable state. Understanding the ecological roles and physiological traits of Enterococcus faecalis strain 10-6-46 can enhance our knowledge of its adaptability and survival strategies in complex environments." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPZH00000000.1 Bac0019022 Enterococcus faecalis strain 10-2-12 "Enterococcus faecalis strain 10-2-12 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, thriving optimally at 37.0°C. As a chemoorganotroph, this strain utilizes organic compounds as its energy source, allowing it to adapt to a variety of habitats. The ability to grow in both the presence and absence of oxygen suggests a versatile ecological role, enabling it to inhabit diverse environments, including those with fluctuating oxygen levels.↵↵This strain's coccoid morphology and nonsporulating nature may influence its survival strategies in various habitats, where it can persist in both aerobic and anaerobic conditions. The facultative anaerobic capability is particularly significant, as it allows E. faecalis strain 10-2-12 to exploit a range of ecological niches, from soil environments to the gastrointestinal tracts of animals and humans.↵↵Understanding the metabolic flexibility and habitat adaptability of Enterococcus faecalis strain 10-2-12 provides insights into its ecological roles and potential interactions within microbial communities. This versatility may contribute to its survival and proliferation in fluctuating conditions, highlighting the importance of such traits in maintaining microbial diversity and function across varied ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPZL00000000.1 Bac0019023 Enterococcus faecalis strain 10-1-09 "Enterococcus faecalis strain 10-1-09 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C and functions as a chemoorganotroph, utilizing organic compounds for energy. This strain exhibits facultative anaerobic behavior, allowing it to grow in both aerobic and anaerobic environments. Enterococcus faecalis, as a species, is known for its ability to inhabit a diverse range of ecological niches, which likely contributes to its adaptability and resilience in various habitats.↵↵The presence of Enterococcus faecalis in multiple environments underscores its ecological versatility. This strain's ability to utilize organic substrates for energy suggests potential roles in nutrient cycling and organic matter decomposition in its habitats. Additionally, the facultative anaerobic nature of strain 10-1-09 may enable it to persist in fluctuating oxygen conditions, further enhancing its survival and functional capacity in different ecological contexts. Understanding the specific interactions and contributions of this strain within its environments could provide insights into its ecological significance and potential applications in biotechnology or environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPZN00000000.1 Bac0019024 Enterococcus faecalis strain 10-1-05 "Enterococcus faecalis strain 10-1-05 is a Gram-positive, cocci-shaped bacterium that demonstrates facultative anaerobic characteristics and is classified as a chemoorganotroph, utilizing organic compounds as its energy source. This strain, nonsporulating in nature, thrives optimally at a temperature of 37.0°C, indicating a preference for conditions that are typically encountered in warm-blooded hosts.↵↵The versatile habitat of Enterococcus faecalis strain 10-1-05 suggests its ability to adapt to a range of environmental conditions, making it a notable inhabitant of various ecosystems, including those associated with human and animal microbiomes as well as environmental settings. The facultative anaerobic metabolism allows this strain to survive and grow in both aerobic and anaerobic environments, which may confer advantages in competing for resources in diverse niches.↵↵The ecological insights drawn from the traits of Enterococcus faecalis strain 10-1-05 emphasize its potential role in nutrient cycling and its adaptability to different habitats. This adaptability is significant in understanding the dynamics of microbial communities in various environments, highlighting the importance of Enterococcus faecalis in maintaining ecosystem balance." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPZO00000000.1 Bac0019025 Enterococcus faecalis strain 10-1-02 "Enterococcus faecalis strain 10-1-02 is a Gram-positive, nonsporulating cocci that exhibits facultative anaerobic metabolism and is characterized as a chemoorganotroph. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of warm-blooded hosts. Enterococcus faecalis is known to inhabit diverse environments, including the gastrointestinal tracts of humans and other animals, as well as various ecological niches, suggesting its adaptability to multiple habitats.↵↵The facultative anaerobic nature of this strain indicates its ability to grow in both the presence and absence of oxygen, allowing it to utilize different metabolic pathways depending on environmental conditions. This versatility in energy acquisition supports its survival in varied ecosystems, ranging from the human gut to more complex environments like soil and water. ↵↵The ecological significance of Enterococcus faecalis strain 10-1-02 may extend to its role in nutrient cycling, particularly in the decomposition of organic matter where it can contribute to the microbial fermentation processes. Its ability to thrive in diverse habitats underscores its potential involvement in both symbiotic relationships within host organisms and in broader environmental contexts where organic substrates are available. Thus, this strain exemplifies the ecological resilience and metabolic versatility of Enterococcus faecalis within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPZQ00000000.1 Bac0019026 Enterococcus faecalis strain 10-1-01 "Enterococcus faecalis strain 10-1-01 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C, demonstrating its adaptability to mammalian host environments. As a facultative anaerobe, this strain can grow in both aerobic and anaerobic conditions, allowing it to inhabit a diverse range of ecological niches. Its metabolic versatility as a chemoorganotroph enables it to utilize organic compounds as energy sources, which further supports its survival in various habitats.↵↵This strain is part of a genus known for its resilience and ability to colonize multiple environments, including the gastrointestinal tracts of humans and other animals. The ability of Enterococcus faecalis to persist in diverse habitats highlights its potential role in microbial communities, where it may interact with other microorganisms and contribute to nutrient cycling. The ecological implications of E. faecalis strain 10-1-01’s metabolic capabilities suggest that it could play a significant role in maintaining microbial homeostasis in its environments. Understanding the specific interactions and contributions of this strain within its ecological context may provide insights into microbial dynamics and the overall health of the ecosystems it inhabits." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 QPZR00000000.1 Bac0019027 Enterococcus faecium strain 07-11-07 "Enterococcus faecium strain 07-11-07 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. This strain exhibits facultative anaerobic growth, allowing it to adapt to varying oxygen levels within its environment. As a member of the Enterococcus genus, it possesses characteristics typical of lactic acid bacteria, which are often involved in fermentation processes.↵↵The presence of E. faecium in fermented mare milk highlights its potential role in dairy fermentation, contributing to the development of flavor and texture in the final product. Its ability to grow under anaerobic conditions suggests a metabolic flexibility that may enhance its survival and functionality in complex microbial communities typical of fermented foods. ↵↵Moreover, Enterococcus faecium strain 07-11-07 may also play a role in the preservation of fermented mare milk through the production of organic acids and other metabolites that can inhibit the growth of spoilage organisms. This ecological niche underscores the importance of studying such strains for their potential applications in food biotechnology and fermentation science, where they may contribute to the safety and quality of dairy products." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPZS00000000.1 Bac0019028 Enterococcus faecium strain 07-03-81 "Enterococcus faecium strain 07-03-81 is a Gram-positive coccus that thrives in the unique habitat of fermented mare milk. As a facultative anaerobe, this microbe possesses the metabolic flexibility to grow in both the presence and absence of oxygen, enabling it to adapt to varying environmental conditions within its niche. ↵↵The coccoid morphology of E. faecium allows it to form clusters or chains, a characteristic typical of the Enterococcus genus. This strain is part of a diverse group of lactic acid bacteria that play a significant role in the fermentation process, which is crucial for developing the flavor and texture of fermented mare milk products. ↵↵Moreover, the ability to survive and proliferate in a dairy environment suggests that E. faecium strain 07-03-81 may contribute to the probiotic profile of fermented mare milk, potentially influencing the microbial community structure and metabolic activity during fermentation. The unique ecological niche of this strain highlights the importance of specific microbial populations in the fermentation processes of non-standard milk substrates, such as mare milk, which may differ in their microbial dynamics compared to more commonly studied dairy sources." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 QPZT00000000.1 Bac0019029 Sporosarcina sp. BI001-red Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina sp. BI001-red 2282866 QQAK00000000.1 Bac0019030 Rhodococcus sp. AG1013 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. AG1013 2183996 QQAT00000000.1 Bac0019031 Nocardia mexicana strain DSM 44952 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia mexicana aerobic 279262 QQAZ00000000.1 Bac0019032 Nocardia pseudobrasiliensis strain DSM 44290 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia pseudobrasiliensis microaerophile 37 mesophilic 45979 QQBC00000000.1 Bac0019033 Mycolicibacterium moriokaense strain DSM 44221 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium moriokaense 39691 QQBJ00000000.1 Bac0019034 Staphylococcus pseudintermedius strain ST496-2 "Staphylococcus pseudintermedius strain ST496-2 is a Gram-positive coccus that typically occurs in clusters or as single cells. This strain demonstrates facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. S. pseudintermedius is primarily associated with host organisms, suggesting a close relationship with animal hosts and potentially indicating its role in the microbiome of these organisms. ↵↵This strain has an optimal growth temperature of 3.0 °C, which may suggest a capacity for survival in cooler environments, possibly reflecting its adaptability to various ecological niches. The clustering arrangement of cells may facilitate certain metabolic and physiological interactions among bacterial cells, potentially enhancing its survival and colonization abilities in host-associated habitats.↵↵Understanding the specific environmental conditions and host associations of Staphylococcus pseudintermedius strain ST496-2 may provide insight into its ecological role and its adaptations to life in close association with animal hosts. This adaptability could be relevant for studies on microbial interactions within host ecosystems and the maintenance of microbial diversity in these environments." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 283734 QQPC00000000.1 Bac0019035 Staphylococcus pseudintermedius strain ST496-5 "Staphylococcus pseudintermedius strain ST496-5 is a Gram-positive bacterium characterized by its cocci shape and tendency to form clusters as well as single cells. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments. It is typically associated with host organisms, suggesting a close relationship with its animal hosts, where it may play a role in the commensal microbiota.↵↵With an optimal growth temperature of 3.0°C, strain ST496-5's temperature preference indicates a potential adaptation to cooler environments or specific niches within its host. This trait may suggest that S. pseudintermedius strain ST496-5 could be involved in processes that occur in cooler bodily sites or during specific physiological conditions, although the precise ecological role remains to be fully elucidated.↵↵The combination of its Gram-positive nature, cocci morphology, and facultative anaerobic capabilities highlights the organism's versatility in adapting to various environments, particularly within host-associated habitats. Understanding the ecological dynamics of S. pseudintermedius strain ST496-5 may provide insights into its interactions within the microbiome of its hosts and its potential responses to environmental changes." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pseudintermedius Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles 283734 QQPH00000000.1 Bac0019036 Meiothermus sp. QL-1 Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp. QL-1 2058095 QQSV00000000.1 Bac0019037 Dyella solisilvae strain DHG54 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella solisilvae 1920168 QQSY00000000.1 Bac0019038 Bosea caraganae strain RCAM 04685 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea caraganae 2763117 QQTP00000000.1 Bac0019039 Microcystis flos-aquae DF17 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis flos-aquae 2060470 QQWB00000000.1 Bac0019040 Sphingomonas sp. ABOLF strain S-NIH.Pt19_1214 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. ABOLF 1985879 QQWX00000000.1 Bac0019041 Sphingomonas sp. ABOLE strain S-NIH.Pt18_1212 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. ABOLE 1985878 QQWY00000000.1 Bac0019042 Bifidobacterium mongoliense strain BMONG18 "Bifidobacterium mongoliense strain BMONG18 is a Gram-positive, facultative anaerobic bacterium. This strain is part of the Bifidobacterium genus, which is often associated with the gut microbiota of humans and various animals. As a facultative anaerobe, B. mongoliense strain BMONG18 has the ability to grow in both the presence and absence of oxygen, allowing it to adapt to diverse environments within the gastrointestinal tract.↵↵Bifidobacteria are recognized for their potential health benefits, particularly in maintaining gut health and modulating the immune response. While specific functional traits and applications of strain BMONG18 have not been detailed, its classification within the Bifidobacterium genus suggests that it may contribute positively to gut microbial diversity and stability.↵↵The adaptability of B. mongoliense strain BMONG18 to varying oxygen levels could provide insights into its ecological role in the human gut microbiome. This flexibility may enable it to thrive in different niches of the gastrointestinal tract, where oxygen levels can fluctuate, thereby supporting its survival and function in various physiological states. Further research into the metabolic capabilities and interactions of this strain could elucidate its specific contributions to gut health and its potential applications in probiotic therapies." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium mongoliense Positive Facultative anaerobe 518643 QRAJ00000000.1 Bac0019043 Enterobacillus tribolii strain DSM 103736 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Enterobacillus Enterobacillus tribolii 1487935 QRAP00000000.1 Bac0019044 Streptomyces sp. HB202 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. HB202 767398 QRAT00000000.1 Bac0019045 Weissella thailandensis strain KCTC 3751 KCTC3751_65 "Weissella thailandensis strain KCTC 3751 (KCTC3751_65) is a coccus-shaped bacterium that typically arranges itself in chains or pairs. This strain is a microaerophile, indicating that it thrives in environments with reduced oxygen levels, which is characteristic of its natural habitat in fermented fish products, specifically pla-ra, a traditional Thai fermented fish dish.↵↵The microaerophilic nature of Weissella thailandensis suggests that it plays a significant role in the fermentation process, likely contributing to the unique flavors and preservation of pla-ra. Its ability to form chains and pairs may facilitate its survival and metabolic efficiency in the complex microbial communities associated with the fermentation of fish. ↵↵Understanding the traits of Weissella thailandensis strain KCTC 3751 can provide insights into the microbial dynamics of fermented foods and the potential applications of such bacteria in food technology and preservation. Furthermore, the presence of this strain in traditional fermentation processes underlines the importance of microbial contributions to culinary practices in specific cultural contexts." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella thailandensis Coccus microaerophile fermented fish; pla-ra; Thai fermented fish Chains; Pairs 89061 QRAY00000000.1 Bac0019046 Hafnia paralvei strain C10 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia paralvei 546367 QRAZ00000000.2 Bac0019047 Pseudomonas fluorescens strain AHK-1 "Pseudomonas fluorescens strain AHK-1 is a Gram-negative, rod-shaped bacterium that exhibits a single-cell arrangement. As a heterotrophic organism, it utilizes organic compounds as its energy source and thrives in various habitats. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. Optimal growth conditions for Pseudomonas fluorescens AHK-1 are observed at a temperature of 25.0°C, which suggests a preference for moderately warm environments.↵↵Members of the Pseudomonas genus, including strain AHK-1, are known for their metabolic versatility, allowing them to inhabit diverse ecological niches, including soil and water environments. This adaptability may enable strain AHK-1 to play a role in nutrient cycling and bioremediation processes, contributing to the degradation of organic pollutants. The ability to grow in various habitats underscores the ecological importance of this strain, particularly in environments where organic material is abundant. This adaptability may also highlight the potential for Pseudomonas fluorescens AHK-1 to interact with other microbial communities, influencing ecosystem dynamics through its metabolic activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 QRBA00000000.1 Bac0019048 Dyella psychrodurans strain 4MSK11 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella psychrodurans 1927960 QRBF00000000.1 Bac0019049 Escherichia coli strain 1-RC-17-04352 "Escherichia coli strain 1-RC-17-04352 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli strain 1-RC-17-04352 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic environments, thereby enhancing its survivability and metabolic versatility within the diverse niches of its host.↵↵Due to its facultative anaerobic nature, E. coli strain 1-RC-17-04352 can efficiently utilize available oxygen while also being capable of fermentation processes when oxygen is limited. This metabolic adaptability may provide insights into its role in the gastrointestinal microbiota of its host, where fluctuations in oxygen levels can occur. Understanding the specific ecological interactions and metabolic pathways of this strain within its host-associated environment could yield valuable knowledge regarding its contributions to host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QRBM00000000.1 Bac0019050 Pseudomonas sp. URMO17WK12:I10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. URMO17WK12:I10 1259799 QRDM00000000.1 Bac0019051 Parasphingopyxis lamellibrachiae strain DSM 26725 "Parasphingopyxis lamellibrachiae strain DSM 26725 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits an aerobic metabolism. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm environments. As a member of the genus Parasphingopyxis, this organism is characterized by its unique cellular structure and growth requirements, which are typical of aerobic bacteria.↵↵The Gram-negative nature of P. lamellibrachiae suggests that it possesses a distinctive outer membrane containing lipopolysaccharides, which may play a role in its interaction with the environment and other microorganisms. The rod shape of this bacterium is indicative of its potential motility and surface area for nutrient absorption, which are critical for its survival in diverse habitats.↵↵While specific ecological roles and interactions of P. lamellibrachiae strain DSM 26725 remain to be fully elucidated, its aerobic nature suggests it may be involved in processes such as organic matter decomposition or biogeochemical cycling in oxygen-rich environments. This strain, therefore, stands as a potential candidate for further studies aimed at understanding microbial dynamics in its natural habitat, contributing to our understanding of microbial ecology and the roles of aerobic bacteria in ecosystem functioning." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Parasphingopyxidaceae Parasphingopyxis Parasphingopyxis lamellibrachiae Gram-negative rod aerobic 29 mesophilic non-spore-forming 680125 QRDP00000000.1 Bac0019052 Paenibacillus sp. VMFN-D1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. VMFN-D1 2135608 QRDU00000000.1 Bac0019053 Winogradskyella eximia strain CECT 7946 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella eximia 262006 QRDV00000000.1 Bac0019054 Seonamhaeicola aphaedonensis strain CECT 8487 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Seonamhaeicola Seonamhaeicola aphaedonensis 1461338 QRDX00000000.1 Bac0019055 Marinoscillum furvescens DSM 4134 Pseudomonadati Bacteroidota Cytophagia Cytophagales Reichenbachiellaceae Marinoscillum Marinoscillum furvescens 1122208 QREG00000000.1 Bac0019056 Paraburkholderia sp. BL27I4N3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL27I4N3 1938805 QREJ00000000.1 Bac0019057 Parabacteroides acidifaciens strain 426-9 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides acidifaciens 2290935 QREV00000000.1 Bac0019058 Trinickia dinghuensis strain DHOM06 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia dinghuensis 2291023 QRGA00000000.1 Bac0019059 Undibacter mobilis strain GY_H H_4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Undibacter Undibacter mobilis 2292256 QRGO00000000.1 Bac0019060 Arthrobacter sp. RT-1 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. RT-1 2292263 QRGQ00000000.1 Bac0019061 Pontibacter diazotrophicus strain H4X Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter diazotrophicus 1400979 QRGR00000000.1 Bac0019062 Bradymonadaceae bacterium TMQ3 Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonadaceae bacterium TMQ3 2283320 QRGZ00000000.1 Bac0019063 Alteromonas aestuariivivens strain KCTC 52655 "Alteromonas aestuariivivens strain KCTC 52655 is a Gram-negative, ovoid-shaped bacterium that exhibits a strict aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 29.0 °C, indicating a preference for moderately warm environments. ↵↵As a member of the Alteromonadaceae family, A. aestuariivivens is likely adapted to dynamic aquatic habitats, such as estuaries, where fluctuating salinity and temperature conditions are common. The non-spore-forming nature of this strain suggests a reliance on its aerobic metabolism for survival, potentially utilizing organic compounds available in its environment for energy production. ↵↵While specific ecological roles of A. aestuariivivens strain KCTC 52655 remain to be fully elucidated, its characteristics suggest that it may play a role in nutrient cycling within estuarine ecosystems. The optimal growth temperature aligns with the thermal conditions typically found in such habitats, indicating that this microbe might contribute to the microbial diversity and metabolic processes that are crucial for maintaining the health of these environments. Further studies could provide insights into its potential applications in biotechnology or bioremediation, particularly in areas affected by organic pollutants." Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas aestuariivivens Gram-negative ovoid motile aerobic 29 mesophilic non-spore-forming 1938339 QRHA00000000.1 Bac0019064 [Ruminococcus] lactaris strain AM25-1LB "[Ruminococcus] lactaris strain AM25-1LB is a Gram-positive, coccoid bacterium notable for its potential role in the fermentation of dietary fibers. This strain exhibits a spherical shape, characteristic of cocci, which may influence its metabolic pathways and interactions within microbial communities. ↵↵As a member of the genus Ruminococcus, this strain is expected to contribute to the degradation of complex carbohydrates, potentially enhancing the fermentation process in various gastrointestinal environments. While specific metabolic capabilities for this strain are not detailed, members of the Ruminococcus genus are generally known for their ability to break down polysaccharides in the mammalian gut, suggesting that strain AM25-1LB may play a role in the digestion of plant materials. ↵↵The Gram-positive nature of [Ruminococcus] lactaris strain AM25-1LB implies a thicker peptidoglycan layer in its cell wall, which can provide structural advantages and may influence its resilience in diverse environments, including those with varying pH levels and nutrient availability. ↵↵This strain's coccoid morphology may also facilitate its aggregation and biofilm formation, which are important for survival in complex microbial ecosystems. Understanding the specific roles and interactions of [Ruminococcus] lactaris strain AM25-1LB in fiber fermentation could provide insights into its potential applications in enhancing gut health and optimizing fermentation processes in agricultural settings." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter [Ruminococcus] lactaris Positive Cocci 46228 QRHG00000000.1 Bac0019065 Mediterraneibacter gnavus strain AM25-19 "Mediterraneibacter gnavus strain AM25-19 is a Gram-positive, nonsporulating cocci that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, which is consistent with its habitat as part of the animal intestinal microflora. ↵↵The presence of Mediterraneanbacter gnavus in the gut microbiota suggests its potential role in the fermentation of dietary fibers and the metabolism of various substrates present in the intestinal environment. The strain's anaerobic requirement indicates its adaptation to the low-oxygen conditions typical of the gut, where it may contribute to maintaining the balance of microbial communities. ↵↵Given its habitat and metabolic capabilities, M. gnavus strain AM25-19 may play a significant role in the digestion of complex carbohydrates, influencing nutrient absorption and overall gut health. Understanding the specific interactions and functions of this strain within the intestinal microbiome could provide valuable insights into its contributions to host physiology and microbial diversity." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 QRHH00000000.1 Bac0019066 Fusobacterium mortiferum strain AM25-1 "Fusobacterium mortiferum strain AM25-1 is a Gram-negative, anaerobic bacterium characterized by its inability to thrive in the presence of oxygen. This strain belongs to the genus Fusobacterium, which is known for its role in various ecological niches, particularly in anaerobic environments. ↵↵As an anaerobe, F. mortiferum strain AM25-1 utilizes fermentation pathways for energy generation, allowing it to survive and proliferate in oxygen-depleted habitats, such as the human oral cavity and gastrointestinal tract. The Gram-negative nature of this strain indicates that it possesses a distinctive cell wall structure, comprising an outer membrane containing lipopolysaccharides, which can play a role in its interactions with host tissues and other microorganisms.↵↵Fusobacterium species are often integral to the complex microbial communities found in their respective environments, contributing to the overall microbial diversity and potentially influencing local metabolic processes. The specific traits of strain AM25-1 suggest that it may occupy a niche where it can interact with other anaerobes, possibly engaging in cross-feeding or syntrophic relationships that enhance the stability and resilience of the microbial community. Understanding the ecological role of F. mortiferum strain AM25-1 could provide insights into the dynamics of anaerobic microbiomes and their contributions to various biogeochemical cycles." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum Negative Anaerobe 850 QRHL00000000.1 Bac0019067 Dorea formicigenerans strain AM23-7AC "Dorea formicigenerans strain AM23-7AC is a Gram-positive anaerobic bacterium primarily inhabiting the gut environment. This strain is characterized by its ability to thrive in oxygen-depleted conditions, which is a common feature of the gastrointestinal microbiota. As a member of the Dorea genus, strain AM23-7AC contributes to the complex microbial community present in the gut, where it may play a role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are important for gut health.↵↵The anaerobic nature of Dorea formicigenerans strain AM23-7AC suggests that it has evolved mechanisms to survive and metabolize in environments devoid of oxygen, which is crucial for maintaining the balance of gut microbiota. Its presence in the gut may influence various physiological processes, including digestion and immune responses, highlighting its potential significance in maintaining gut homeostasis.↵↵The unique ecological role of Dorea formicigenerans strain AM23-7AC as a fermentative organism in the anaerobic environment of the gut underscores its contribution to the metabolic network of gut microbes, facilitating the breakdown of complex carbohydrates that the host cannot digest. This metabolic activity may have implications for host health, particularly in relation to nutrient absorption and the modulation of gut microbiota composition." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QRHN00000000.1 Bac0019068 Coprococcus comes strain AM23-3 "Coprococcus comes strain AM23-3 is a Gram-positive, coccoid bacterium that exhibits strict anaerobic growth conditions. This strain is part of the genus Coprococcus, which is recognized for its presence in the gastrointestinal tracts of various animals, including humans. The cocci shape of strain AM23-3 suggests a potential role in fermentative processes, contributing to the overall microbiota composition and metabolic functions within the gut environment.↵↵As an anaerobe, Coprococcus comes strain AM23-3 thrives in oxygen-depleted conditions, which is typical for many gut microbes. This adaptation allows it to participate in the fermentation of complex carbohydrates into short-chain fatty acids (SCFAs), such as butyrate, which are crucial for maintaining gut health and influencing host metabolism. ↵↵The strain's ability to grow in anaerobic environments underscores its potential role in the complex interplay of gut microbiota, where it may contribute to nutrient cycling and modulation of the host’s immune response. Additionally, understanding the specific metabolic pathways utilized by strain AM23-3 could provide insights into how this microbe interacts with dietary components and other microbial inhabitants, further elucidating its ecological significance in the gut ecosystem. Thus, Coprococcus comes strain AM23-3 exemplifies the intricate relationships within microbial communities and their broader implications for host health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Allocoprococcus Allocoprococcus comes Positive Cocci Anaerobe 410072 QRHO00000000.1 Bac0019069 Eubacterium ventriosum strain AM23-22 "Eubacterium ventriosum strain AM23-22 is a Gram-positive, anaerobic bacterium predominantly found in fecal matter. This microbe plays a significant role in the gastrointestinal microbiota of various hosts, contributing to the complex interactions within the gut ecosystem. As an anaerobe, Eubacterium ventriosum strain AM23-22 thrives in oxygen-depleted environments, which is characteristic of the intestinal tract where it may participate in fermentation processes and the breakdown of complex polysaccharides.↵↵The Gram-positive nature of this strain suggests the presence of a thick peptidoglycan layer in its cell wall, which can provide structural integrity and protection in its natural habitat. Understanding the specific metabolic pathways and interactions of Eubacterium ventriosum strain AM23-22 within the gut microbiome could elucidate its potential role in nutrient availability and microbial balance. ↵↵Insights into this organism's metabolic capabilities may shed light on its contributions to the overall health of the digestive system, including its potential influence on host metabolism and immune function. Further studies on Eubacterium ventriosum strain AM23-22 could enhance our understanding of microbial diversity in fecal environments and the importance of anaerobic bacteria in maintaining gut health." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ventriosum Positive Anaerobe feces 39496 QRHR00000000.1 Bac0019070 Dorea longicatena strain AM23-13 "Dorea longicatena strain AM23-13 is a Gram-positive, anaerobic bacterium belonging to the genus Dorea. This strain exhibits the characteristic features of anaerobes, thriving in environments devoid of oxygen, which is critical for its metabolic pathways. As a member of the Dorea genus, it is likely to participate in the fermentation of complex carbohydrates, contributing to the microbial ecosystem, particularly in anaerobic environments such as the gastrointestinal tracts of animals.↵↵The Gram-positive nature of strain AM23-13 suggests a thick peptidoglycan layer in its cell wall, which may play a role in its resilience and functionality in anaerobic conditions. This structural characteristic can also influence its interactions with other microorganisms and the host environment.↵↵Understanding the traits of Dorea longicatena strain AM23-13 can provide insights into its potential roles in microbial communities, particularly in nutrient cycling and gut health. Its anaerobic lifestyle aligns with the ecological niches it may occupy, such as those found in the intestines of mammals, where it may contribute to the fermentation processes that are essential for the digestion of dietary fibers. This metabolic capability highlights the importance of anaerobic bacteria like Dorea longicatena in maintaining gut microbiome diversity and function, which is crucial for the overall health of the host organism." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea longicatena Positive Anaerobe 88431 QRHW00000000.1 Bac0019071 Roseburia intestinalis strain AM22-21LB "Roseburia intestinalis strain AM22-21LB is a Gram-positive, rod-shaped bacterium that thrives in the anaerobic environment of the animal intestinal microflora. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds rather than through photosynthesis or other inorganic processes. Its optimal growth temperature is approximately 37.0°C, which aligns with the physiological conditions typically present in the intestinal tract of warm-blooded animals.↵↵Notably, Roseburia intestinalis strain AM22-21LB is nonsporulating, suggesting that it does not form spores as a means of survival under adverse conditions. This trait may indicate a reliance on its stable intestinal habitat for growth and reproduction, as the absence of sporulation could limit its resilience to environmental stressors outside the host.↵↵The presence of this strain within the gut microbiome is of interest due to its potential role in metabolic processes and interactions with the host. Given its classification as an anaerobe, Roseburia intestinalis strain AM22-21LB likely contributes to the fermentation of dietary fibers, producing short-chain fatty acids that are beneficial for gut health. This metabolic activity highlights the importance of such microbes in maintaining a balanced intestinal ecosystem and supporting host nutrition." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia intestinalis Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 166486 QRID00000000.1 Bac0019072 Segatella copri strain AM22-2 "Segatella copri strain AM22-2 is a Gram-negative, anaerobic bacterium that inhabits the gut environment. This strain, belonging to the genus Segatella, is characterized by its adaptation to anaerobic conditions, which aligns with its gut habitat where oxygen levels are typically low. The presence of such bacteria in the gastrointestinal tract plays a crucial role in maintaining the microbial balance and facilitating various metabolic processes.↵↵Gram-negative bacteria are known for their unique cell wall structure, which includes an outer membrane that can influence their interactions with the host and other microorganisms. While specific metabolic functions of Segatella copri strain AM22-2 have not been detailed, its anaerobic nature suggests it may participate in fermentation processes or contribute to the breakdown of complex carbohydrates in the gut.↵↵The gut microbiota, including strains like AM22-2, is increasingly recognized for its influence on host health, including digestion and immune response. The presence of Segatella copri strain AM22-2 in the gut ecosystem may indicate its potential role in the fermentation of dietary fibers, contributing to short-chain fatty acid production, which is beneficial for gut health. Further studies could elucidate the specific contributions of this strain to gut microbiota dynamics and its interactions with other microbial communities." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe gut 165179 QRIE00000000.1 Bac0019073 Segatella copri strain AM22-19 "Segatella copri strain AM22-19 is a Gram-negative, anaerobic bacterium primarily located in the gut environment. This strain is part of the diverse microbiota that resides within the gastrointestinal tract, where it likely contributes to various metabolic processes. The anaerobic nature of Segatella copri strain AM22-19 suggests that it thrives in oxygen-depleted conditions, which are characteristic of the gut lumen.↵↵As a member of the gut microbiome, Segatella copri strain AM22-19 may play a role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are critical for gut health and host metabolism. The characteristics of this strain highlight its potential importance in maintaining a balanced gut ecosystem, where it may interact with other microbial species and influence the overall microbial community structure.↵↵Understanding the specific functions and interactions of Segatella copri strain AM22-19 within the gut environment could provide insights into its contributions to intestinal health and its potential implications in the context of gut homeostasis. Further research may elucidate the specific metabolic pathways utilized by this strain, as well as its role in the complex interplay of gut microbiota, which is essential for overall host wellbeing." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe gut 165179 QRIF00000000.1 Bac0019074 Segatella copri strain AM22-1 "Segatella copri strain AM22-1 is a Gram-negative, anaerobic bacterium predominantly found in the gut environment. This strain contributes to the complex microbial ecosystem of the gastrointestinal tract, where it plays a role in various biochemical processes associated with digestion and metabolism. As an anaerobe, Segatella copri strain AM22-1 thrives in low-oxygen conditions, which are typical of the gut habitat, allowing it to establish a niche that may influence the overall microbial community structure.↵↵The presence of Segatella copri strain AM22-1 in the gut suggests its potential involvement in metabolic pathways that could impact host physiology, including the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for gut health. While specific functional traits of this strain remain to be elucidated, its adaptation to the anaerobic gut environment underscores its importance in maintaining homeostasis within the microbial ecosystem. Further studies may reveal insights into how Segatella copri strain AM22-1 interacts with other gut microbes and contributes to the host's metabolic functions, ultimately enhancing our understanding of gut microbiota dynamics." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe gut 165179 QRIN00000000.1 Bac0019075 Mediterraneibacter gnavus strain AM21-18 "Mediterraneibacter gnavus strain AM21-18 is a Gram-positive, nonsporulating coccus that thrives in anaerobic conditions, utilizing a chemoheterotrophic metabolism. This strain is optimally adapted to a temperature of 37.0°C, aligning with its natural habitat within the intestinal microflora of animals. As a member of the gut microbiota, M. gnavus strain AM21-18 plays a potential role in the complex interactions of microbial communities in the gastrointestinal tract, contributing to the overall health and metabolic processes of the host. ↵↵The anaerobic nature of this strain suggests its involvement in fermentation processes, possibly influencing the gut environment by participating in the breakdown of dietary components and producing metabolites that may affect host physiology. Further research into M. gnavus strain AM21-18 could provide insights into its specific functions within the intestinal ecosystem, including its potential contributions to nutrient absorption and immune modulation. Understanding the traits and behaviors of this strain could enhance our knowledge of gut microbiome dynamics and the intricate relationships between microbial species and their hosts." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 QRIS00000000.1 Bac0019076 Blautia obeum strain AM18-2AC "Blautia obeum strain AM18-2AC is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, predominantly residing in the intestinal microflora of animals. This strain thrives in anaerobic environments, reflecting its adaptation to the oxygen-limited conditions typical of the gastrointestinal tract.↵↵As a member of the animal gut microbiome, Blautia obeum strain AM18-2AC likely plays a significant role in the digestion and fermentation of complex polysaccharides, contributing to the overall metabolic processes within the host. The presence of such bacteria is essential for maintaining a balanced gut ecosystem, influencing nutrient absorption and potentially modulating the host's immune responses.↵↵Moreover, the ability of Blautia obeum strain AM18-2AC to survive and proliferate in an anaerobic environment underscores its potential importance in the fermentation processes that yield short-chain fatty acids, which are beneficial for host health. Understanding the specific functions and interactions of this strain within the animal intestinal microflora could provide insights into its contributions to gut health and overall well-being." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QRJH00000000.1 Bac0019077 Phocaeicola plebeius strain AM17-44 "Phocaeicola plebeius strain AM17-44 is a Gram-negative, rod-shaped bacterium that is nonsporulating and functions as a chemoheterotroph, deriving its energy from organic compounds. This strain is categorized as an anaerobe, indicating its growth and metabolic processes occur in environments devoid of oxygen. ↵↵Phocaeicola plebeius strain AM17-44 is part of the complex microbial community found within the intestinal microflora of animals. The presence of such bacteria is essential for maintaining gut health, contributing to digestion, and potentially influencing the overall microbiome balance. The nonsporulating nature of this strain suggests a reliance on stable environmental conditions for survival, as it does not produce spores that can endure extreme conditions.↵↵Given its specific habitat within the animal intestine and its anaerobic characteristics, Phocaeicola plebeius strain AM17-44 may play a role in the fermentation of dietary components, contributing to nutrient absorption and metabolic processes that benefit the host. The relationship between this strain and its host's gut environment highlights the intricate dependencies that exist within microbial communities, emphasizing the importance of anaerobic bacteria in maintaining gastrointestinal homeostasis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius Negative Rod No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 310297 QRJS00000000.1 Bac0019078 Vagococcus sp. AM17-17 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus sp. AM17-17 2292077 QRJY00000000.1 Bac0019079 Parabacteroides merdae strain AM16-50 "Parabacteroides merdae strain AM16-50 is a Gram-negative, anaerobic bacterium known for its capacity to thrive in environments devoid of oxygen. As part of the diverse microbial community, it plays a significant role in various anaerobic ecosystems, particularly within the gastrointestinal tracts of mammals, where it may contribute to the degradation of complex carbohydrates and the fermentation processes that generate short-chain fatty acids. The anaerobic nature of P. merdae strain AM16-50 suggests that it possesses metabolic pathways adapted to the absence of oxygen, allowing it to utilize alternative electron acceptors during its energy production processes.↵↵This strain’s Gram-negative classification indicates a specific cell wall structure characterized by a thin peptidoglycan layer and an outer membrane, which may influence its interactions with other microbial species and its susceptibility to certain antimicrobial agents. The understanding of P. merdae strain AM16-50's metabolic capabilities can provide insights into its potential roles in maintaining gut health and influencing the overall balance of gut microbiota.↵↵Further exploration of Parabacteroides merdae strain AM16-50 may reveal its interactions within complex microbial communities and its contributions to nutrient cycling in anaerobic habitats, underscoring the importance of such microorganisms in ecosystem functioning and health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 46503 QRKC00000000.1 Bac0019080 Bacteroides caccae strain AM16-49B "Bacteroides caccae strain AM16-49B is a Gram-negative, anaerobic bacterium characterized by its inability to survive in the presence of oxygen. This strain is part of the Bacteroides genus, which is commonly found in the intestines of humans and animals, playing a crucial role in the digestion of complex carbohydrates. The anaerobic nature of Bacteroides caccae strain AM16-49B suggests it thrives in low-oxygen environments, such as the gastrointestinal tract, where it likely contributes to the fermentation processes that produce short-chain fatty acids, essential for host health.↵↵The Gram-negative cell wall structure of this strain is notable for its thin peptidoglycan layer, which is surrounded by an outer membrane containing lipopolysaccharides. This unique cell wall composition can influence its interactions with the host's immune system and may affect its ecological niche within the gut microbiome. The metabolic capabilities of Bacteroides caccae strain AM16-49B may enable it to exploit a variety of substrates, thereby enhancing the microbial diversity and stability of the gut ecosystem.↵↵Understanding the specific traits of Bacteroides caccae strain AM16-49B provides insight into its potential role in maintaining gut health, as well as its contribution to the overall balance of microbial communities within the intestinal environment. Its anaerobic metabolism underscores the importance of microbial adaptation to low-oxygen niches, highlighting the complex interplay between gut bacteria and their host." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe 47678 QRKD00000000.1 Bac0019081 Bacteroides sp. AM16-24 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM16-24 2292002 QRKI00000000.1 Bac0019082 Bacteroides intestinalis strain AM15-15 "Bacteroides intestinalis strain AM15-15 is a Gram-negative, obligate anaerobic bacterium that is part of the diverse microbiota inhabiting the intestines of various hosts. This strain is characterized by its inability to grow in the presence of oxygen, which suggests a metabolic adaptation that allows it to thrive in the low-oxygen environments typical of the gastrointestinal tract. ↵↵As a member of the Bacteroides genus, B. intestinalis strain AM15-15 is likely involved in the fermentation of complex polysaccharides, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are essential for host health. The anaerobic nature of this strain indicates it may play a significant role in maintaining gut homeostasis by competing with potential pathogens and modulating the immune response.↵↵Understanding the specific metabolic pathways and interactions of Bacteroides intestinalis strain AM15-15 within the gut ecosystem could provide insights into its role in nutrient absorption and its potential benefits in maintaining gut health. Further research into this strain may elucidate its contributions to the overall functionality of the gut microbiome, particularly in relation to dietary influences and host-microbe interactions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis Negative Anaerobe 329854 QRKQ00000000.1 Bac0019083 Parabacteroides merdae strain AM14-15 "Parabacteroides merdae strain AM14-15 is a Gram-negative, anaerobic bacterium characterized by its inability to survive in the presence of oxygen. As a member of the genus Parabacteroides, this strain is likely to thrive in anaerobic environments, such as the gastrointestinal tracts of mammals, where it may play a role in the complex microbial community. ↵↵The Gram-negative nature of Parabacteroides merdae strain AM14-15 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a feature that contributes to its resilience in anaerobic conditions. This structural characteristic may influence its interactions with other microorganisms and the host environment. ↵↵Given the increasing interest in gut microbiota and its implications for health, understanding the specific traits of Parabacteroides merdae strain AM14-15 could provide insights into its potential functional roles within microbial consortia. The ecological niche occupied by this strain may contribute to metabolic processes, such as fermentation and the degradation of complex carbohydrates, which are vital for nutrient absorption in host organisms. Further research into this strain could elucidate its contributions to gut health and its potential applications in probiotic formulations, particularly in contexts where anaerobic bacteria play a crucial role in maintaining microbial balance." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 46503 QRKZ00000000.1 Bac0019084 Phocaeicola vulgatus strain AM13-21 "Phocaeicola vulgatus strain AM13-21 is a Gram-positive, rod-shaped bacterium that exists predominantly as single cells within host-associated environments. As an anaerobic organism, it thrives in oxygen-depleted niches, which may include the gastrointestinal tracts of various host species. The strain's morphology and anaerobic lifestyle suggest adaptations that enable it to occupy specific ecological niches where oxygen levels are minimal, thereby influencing its interactions with host microbiomes.↵↵The presence of P. vulgatus strain AM13-21 in host-associated habitats may indicate its role in complex microbial communities, where it potentially contributes to metabolic processes that benefit the host. Further investigation into the specific interactions and functions of this strain within its ecological context could provide insights into its contributions to host health or homeostasis. Understanding the dynamics of such anaerobic bacteria is crucial, as they may play key roles in nutrient cycling and the maintenance of microbial diversity within host environments." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRLF00000000.1 Bac0019085 Bifidobacterium adolescentis strain AM12-20 "Bifidobacterium adolescentis strain AM12-20 is a Gram-positive, non-sporulating rod that typically exists in singles and is classified as an anaerobic bacterium. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found within the human gut, its primary habitat. ↵↵As a member of the Bifidobacterium genus, B. adolescentis is associated with host environments, particularly in the gastrointestinal tract of humans, where it plays a significant role in the maintenance of gut health. It is known for its contribution to the fermentation of dietary fibers, producing beneficial metabolites such as short-chain fatty acids that can aid in intestinal health and potentially influence the host's immune response.↵↵The anaerobic nature of Bifidobacterium adolescentis strain AM12-20 suggests it has adapted to thrive in low-oxygen environments, which is characteristic of the intestinal microbiota. This adaptation highlights the importance of anaerobic bacteria in the gut ecosystem, where they compete for resources and interact with other microbial communities, contributing to the overall metabolic functions and stability of the gut microbiome. Understanding the specific traits of this strain can provide insights into its functional roles and potential benefits in probiotic applications and gut health management." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 QRLP00000000.1 Bac0019086 Bacteroides sp. AM10-21B Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM10-21B 2292001 QRME00000000.1 Bac0019087 Acidaminococcus sp. AM05-11 Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus sp. AM05-11 2291997 QRMX00000000.1 Bac0019088 Bacteroides xylanisolvens strain AF46-11NS "Bacteroides xylanisolvens strain AF46-11NS is a Gram-negative, strictly anaerobic bacterium. This strain is part of the Bacteroides genus, which is known for its role in the microbial communities of the human gut. As an anaerobe, B. xylanisolvens strain AF46-11NS thrives in environments devoid of oxygen, utilizing alternative metabolic pathways for energy production.↵↵The specific capabilities of B. xylanisolvens strain AF46-11NS are indicative of its adaptation to anaerobic conditions, which is common among gut microbiota that contribute to the fermentation of complex carbohydrates, including xylan, a major component of plant hemicellulose. This metabolic specialization suggests a role for this strain in the breakdown of plant polysaccharides, potentially leading to the production of short-chain fatty acids, which are beneficial for gut health.↵↵Though the precise ecological niche and interactions of B. xylanisolvens strain AF46-11NS within the intestinal microbiome remain to be fully elucidated, its anaerobic nature points to its involvement in the fermentation processes that are crucial for nutrient absorption and overall gut homeostasis. Understanding the function of this strain could provide insights into its contribution to gastrointestinal health and its potential utility in biotechnological applications focused on fiber degradation." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 QRNE00000000.1 Bac0019089 Phocaeicola vulgatus strain AF41-8MH "Phocaeicola vulgatus strain AF41-8MH is a Gram-positive, rod-shaped anaerobic bacterium that occurs as single cells and is associated with host environments. This strain, belonging to the genus Phocaeicola, is characterized by its specific habitat, suggesting a potential symbiotic relationship with its host. As an anaerobe, P. vulgatus strain AF41-8MH thrives in oxygen-depleted conditions, which is typical for many gut microbiota members, potentially playing a role in the fermentation processes within the host's digestive system. ↵↵The presence of this strain in a host-associated environment indicates its possible involvement in the complex interactions of microbial communities, contributing to the overall metabolic activities and health of the host. Further investigation into P. vulgatus strain AF41-8MH could provide insights into its specific functions within these microbial ecosystems and its interactions with other microbial species, which may illuminate its role in maintaining host homeostasis. Understanding its ecological niche could also shed light on the broader implications of anaerobic bacteria in host-associated microbiomes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRNW00000000.1 Bac0019090 Bacteroides xylanisolvens strain AF39-6AC "Bacteroides xylanisolvens strain AF39-6AC is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This strain is a member of the Bacteroides genus, which is known for its role in the gut microbiome and its capacity to degrade complex carbohydrates, specifically xylans. The anaerobic nature of B. xylanisolvens strain AF39-6AC indicates that it is adapted to environments where oxygen is limited, which is typical of the intestinal tract of mammals.↵↵As a member of the Bacteroides genus, this strain likely plays a significant role in the fermentation of dietary fibers, contributing to the overall metabolic processes within the gut. The ability to metabolize xylan, a major component of plant hemicellulose, suggests that B. xylanisolvens strain AF39-6AC could potentially influence the availability of nutrients and the composition of the gut microbiota by breaking down plant-derived polysaccharides. This metabolic capability may facilitate the production of short-chain fatty acids, which are beneficial for host health and can impact gut homeostasis.↵↵The unique ecological insight regarding B. xylanisolvens strain AF39-6AC lies in its potential role in the degradation of plant materials within anaerobic environments, contributing not only to its own survival but also enhancing the overall health of the gut ecosystem through the promotion of microbiome diversity and nutrient utilization." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 QROC00000000.1 Bac0019091 Blautia obeum strain AF39-4 "Blautia obeum strain AF39-4 is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, thriving in anaerobic conditions within the intestinal microflora of animals. This bacterium is part of a diverse community of microbes that contribute to the complex dynamics of gut microbiota. Its adaptation to an anaerobic environment suggests that it plays a role in the fermentation processes occurring in the gut, potentially aiding in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health. ↵↵The presence of Blautia obeum in the intestinal tract highlights its importance in maintaining gut homeostasis and contributing to the overall metabolic activities of the microbiome. Given its specific habitat and metabolic capabilities, this strain may be involved in interactions with other gut microorganisms, influencing both microbial diversity and the nutritional landscape of the gut environment. Further studies on Blautia obeum strain AF39-4 could elucidate its specific contributions to gut health and its potential interactions with host metabolic pathways." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QROE00000000.1 Bac0019092 Agathobacter rectalis strain AF39-14AC "Agathobacter rectalis strain AF39-14AC is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph under anaerobic conditions, with an optimal growth temperature of 37.0°C. This strain is part of a diverse microbial community and exhibits metabolic versatility, utilizing various organic compounds as energy sources. ↵↵While specific habitat details for strain AF39-14AC are not provided, members of the genus Agathobacter are typically found in multiple environments, including the gastrointestinal tracts of mammals, where they may play roles in the fermentation of dietary fibers and the production of short-chain fatty acids. These metabolic activities suggest that A. rectalis could contribute to maintaining gut health by influencing microbial balance and nutrient absorption.↵↵The anaerobic nature of this strain highlights its adaptation to environments where oxygen is limited, such as the intestines, underscoring the importance of anaerobes in the microbiome. Understanding the characteristics of A. rectalis strain AF39-14AC may provide insights into its functional roles in complex microbial ecosystems and its potential interactions with other gut microbiota. Further studies could elucidate its specific contributions to metabolic processes and host interactions, deepening our understanding of microbial ecology in health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QROF00000000.1 Bac0019093 Bacteroides sp. AF39-11AC Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF39-11AC 2291999 QROH00000000.1 Bac0019094 Phocaeicola plebeius strain AF39-11 "Phocaeicola plebeius strain AF39-11 is a Gram-negative, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, deriving its energy from organic compounds. This strain is strictly anaerobic, indicating that it thrives in environments devoid of oxygen. P. plebeius strain AF39-11 is part of the intestinal microflora of animals, suggesting a symbiotic relationship with its host organisms.↵↵The anaerobic nature of this bacterium highlights its adaptation to the anaerobic conditions typically found in the intestines, where it may play a role in the fermentation of dietary components and contribute to the overall microbial balance within the gastrointestinal tract. Given its classification within the animal intestinal microflora, P. plebeius strain AF39-11 may also be involved in various metabolic processes that are essential for digestion and nutrient absorption.↵↵As a member of the gut microbiota, the ecological role of P. plebeius strain AF39-11 could extend beyond mere symbiosis; it may participate in the modulation of host immune responses or influence the metabolic pathways in the gut environment. Future studies could elucidate its specific contributions to gut health and its interactions with other microbial species within the complex ecosystem of the intestinal tract." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius Negative Rod No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 310297 QROI00000000.1 Bac0019095 Segatella copri strain AF38-11 "Segatella copri strain AF38-11 is a Gram-negative anaerobic bacterium predominantly found in the gut microbiome. As an anaerobe, this strain thrives in oxygen-depleted environments, which is characteristic of the gastrointestinal tract where it resides. The gut serves as a complex habitat that supports a diverse array of microbial communities, and Segatella copri strain AF38-11 contributes to this ecological niche.↵↵The specific physiological and metabolic capabilities of Segatella copri strain AF38-11 remain to be fully elucidated; however, its presence within the gut microbiome suggests potential roles in digestion, nutrient absorption, and host-microbe interactions. The bacterium's Gram-negative status indicates a unique cell wall structure that may influence its interactions with other microbial species within the gut and the host's immune system.↵↵Understanding the traits of Segatella copri strain AF38-11 could provide insights into its functional contributions to gut health and its potential influence on the overall composition of the gut microbiota. Given the intricate relationships between gut bacteria and host physiology, further investigation into this strain may reveal its ecological significance in maintaining microbial diversity and supporting gastrointestinal function." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe gut 165179 QROP00000000.1 Bac0019096 Blautia obeum strain AF37-6AC "Blautia obeum strain AF37-6AC is a Gram-positive, nonsporulating cocci that functions as a chemoheterotroph, utilizing organic compounds for energy. This strain is typically found within the intestinal microflora of animals, where it contributes to the complex microbial ecosystem of the gut. As an anaerobic organism, Blautia obeum strain AF37-6AC thrives in environments devoid of oxygen, which aligns with its natural habitat in the gastrointestinal tract.↵↵The presence of Blautia obeum within the intestinal microbiota underscores its potential role in digestion and nutrient absorption, as well as its contribution to the overall health of the host. Understanding the characteristics of this strain can offer insights into its interactions within the gut microbiome, particularly in relation to metabolic processes and the maintenance of intestinal homeostasis. Given its specialized adaptations to an anaerobic environment, Blautia obeum strain AF37-6AC could also serve as a model for studying the functionality and dynamics of gut microbiota in various animal hosts. Such insights may inform future research on the implications of gut microbiota composition in health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QROS00000000.1 Bac0019097 Bacteroides thetaiotaomicron strain AF37-12 "Bacteroides thetaiotaomicron strain AF37-12 is a Gram-negative, rod-shaped anaerobic bacterium primarily associated with host environments. This strain is part of the Bacteroides genus, which is known for its role in the human gut microbiome, where it contributes to the fermentation of complex carbohydrates and plays a crucial role in maintaining gut health.↵↵As an anaerobe, B. thetaiotaomicron strain AF37-12 thrives in oxygen-depleted environments, which is characteristic of the intestinal tract. Its ability to colonize host-associated habitats suggests a symbiotic relationship with its host, likely aiding in the digestion of dietary fibers and the production of short-chain fatty acids. These metabolic processes not only benefit the host by providing essential nutrients but may also influence the host's immune response and overall gut homeostasis.↵↵The precise ecological role of B. thetaiotaomicron strain AF37-12 within the gut microbiota exemplifies the complex interactions between microbial communities and their hosts. Understanding this strain's specific contributions to gut health may provide insights into the mechanisms underlying microbial influence on nutrient absorption and immune modulation, highlighting the importance of maintaining a balanced gut microbiome for overall health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 818 QROV00000000.1 Bac0019098 Parabacteroides distasonis strain AF36-3 "Parabacteroides distasonis strain AF36-3 is a Gram-positive, non-sporulating rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. This strain is part of the diverse microbiota found in the gastrointestinal tracts of various hosts, where it plays a role in complex microbial communities. As an anaerobe, P. distasonis AF36-3 utilizes fermentation pathways to metabolize substrates, contributing to the overall metabolic functions within its habitat.↵↵The non-sporulating nature of this strain suggests a reliance on stable environments for survival, which may limit its ability to withstand extreme conditions typically faced by sporulating bacteria. Its adaptation to host-associated habitats indicates a potential symbiotic relationship, where the bacterium could assist in nutrient absorption or contribute to the maintenance of gut health. The specific interactions of P. distasonis AF36-3 with its host and other microbial inhabitants remain an area for further exploration.↵↵Understanding the ecological roles and metabolic capabilities of P. distasonis AF36-3 enhances our comprehension of the complex interactions within the gut microbiome. Insights into this strain could provide valuable information regarding its contributions to host metabolism and health, emphasizing the importance of anaerobic bacteria in maintaining homeostasis within microbial ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 QRPA00000000.1 Bac0019099 Lachnospira eligens strain AF35-21 "Lachnospira eligens strain AF35-21 is a Gram-negative, rod-shaped anaerobic bacterium that is associated with host organisms. This strain is part of the Lachnospiraceae family, which is commonly found in the gastrointestinal tracts of various animals, including humans. The anaerobic nature of L. eligens implies that it thrives in environments devoid of oxygen, where it plays a significant role in the fermentation of dietary fibers and the metabolism of other organic compounds. ↵↵The host-associated habitat of L. eligens suggests that it may contribute to the overall microbial diversity and functionality within the gut microbiome. By participating in the breakdown of complex carbohydrates, this bacterium aids in the production of short-chain fatty acids, which are crucial for host health and can influence metabolic processes and immune responses. ↵↵Furthermore, the presence of Lachnospira species in the gut microbiota has been associated with various physiological functions, including the maintenance of gut barrier integrity and modulation of immune system activity. Understanding the specific roles and interactions of L. eligens strain AF35-21 within its host environment may provide insights into the symbiotic relationships that underpin gut health and the potential implications for nutritional strategies and microbiome-mediated health outcomes." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira eligens Negative Rod 1 Anaerobe Mesophilic HostAssociated Free living 39485 QRPM00000000.1 Bac0019100 Bacteroides stercoris strain AF35-20 "Bacteroides stercoris strain AF35-20 is a Gram-negative, anaerobic bacterium recognized for its role in the gastrointestinal tract of various hosts. As a member of the Bacteroides genus, this strain thrives in oxygen-deprived environments, which is characteristic of the intestinal milieu where it contributes to the complex microbial ecosystem. ↵↵The Gram-negative nature of B. stercoris strain AF35-20 indicates a distinctive cell wall structure, comprised of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural composition not only influences its environmental adaptability but may also affect its interactions with host organisms and other microbial communities.↵↵Owing to its anaerobic requirement, B. stercoris strain AF35-20 is likely to participate in fermentation processes, contributing to the degradation of complex polysaccharides in the gut. This metabolic capability is essential for nutrient absorption and energy production within the host, underscoring the importance of such microorganisms in maintaining gut health and functionality.↵↵Overall, the ecological role of Bacteroides stercoris strain AF35-20 highlights the intricate balance of microbial life in anaerobic environments and its significance in nutrient cycling within the gastrointestinal ecosystem. The interactions and metabolic activities of this strain may provide insights into the broader implications of gut microbiota on host health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 QRPN00000000.1 Bac0019101 Butyricimonas virosa strain AF34-33 "Butyricimonas virosa strain AF34-33 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions and is characterized by its non-spore-forming nature. This microbe has garnered interest due to its unique metabolic capabilities, particularly in the context of butyrate production, which is a short-chain fatty acid that plays a significant role in gut health and metabolism.↵↵The anaerobic requirement of strain AF34-33 suggests that it occupies niches within environments devoid of oxygen, such as the gastrointestinal tracts of various hosts or other anoxic habitats. Its Gram-negative cell wall structure may confer specific advantages in these environments, such as resilience against certain types of antimicrobial agents or the ability to form complex interactions with other microbial communities.↵↵Additionally, the non-sporulating characteristic of Butyricimonas virosa strain AF34-33 indicates that it relies on other survival strategies to withstand adverse conditions, possibly involving metabolic flexibility or symbiotic relationships with other microorganisms. Understanding the physiological and ecological roles of this strain could illuminate its contributions to microbial consortia and its potential implications for health and disease, particularly in relation to gut microbiota composition and function.↵↵Overall, the unique anaerobic lifestyle and metabolic capabilities of Butyricimonas virosa strain AF34-33 may play a critical role in shaping the dynamics of microbial communities in oxygen-depleted environments, highlighting its significance in broader ecological contexts." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas virosa Gram-negative rod non-motile anaerobic non-spore-forming 544645 QRPV00000000.1 Bac0019102 Bacteroides eggerthii strain AF33-15AC "Bacteroides eggerthii strain AF33-15AC is a Gram-negative, anaerobic bacterium that is a member of the human gut microbiota. This strain, like other members of the Bacteroides genus, plays a significant role in the digestive processes within the human gastrointestinal tract, contributing to the breakdown of complex polysaccharides and fiber. The anaerobic nature of B. eggerthii indicates that it thrives in environments devoid of oxygen, which is characteristic of the gut environment where it resides.↵↵Bacteroides species, including B. eggerthii, are known to interact synergistically with other microbial communities in the gut, influencing metabolic pathways and maintaining gut health. The presence of B. eggerthii in the human gut microbiota underscores its potential importance in digestion and nutrient absorption, as well as in modulating immune responses. As a member of a diverse microbial ecosystem, B. eggerthii may also contribute to the stability of the gut microbiome, which is critical for overall health.↵↵Furthermore, understanding the specific functions and interactions of Bacteroides eggerthii strain AF33-15AC within the gut microbiota could provide insights into the complex relationships that exist among gut microbes and their host, potentially revealing novel aspects of microbial symbiosis and its impact on human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides eggerthii Negative Anaerobe human gut microbiota 28111 QRQD00000000.1 Bac0019103 Phocaeicola vulgatus strain AF31-3 "Phocaeicola vulgatus strain AF31-3 is a Gram-positive, rod-shaped bacterium that is characterized by its single-cell arrangement and strict anaerobic metabolism. This microbe is host-associated, indicating that it is typically found in association with a specific host organism, although details about the precise host have not been provided. The anaerobic nature of P. vulgatus strain AF31-3 suggests that it thrives in environments devoid of oxygen, which is a common characteristic of many gut-associated bacteria.↵↵The rod shape of P. vulgatus strain AF31-3 may facilitate its colonization and persistence in anaerobic niches, such as the gastrointestinal tract of its host, where it can engage in complex interactions with the host's microbiota. This strain is likely involved in various metabolic processes that contribute to the overall health and stability of its microbiome environment. The significance of host-associated, anaerobic bacteria like P. vulgatus strain AF31-3 lies in their potential roles in fermentation and nutrient production, which can influence the host's digestion and immune response. Understanding the specific interactions of this strain with its host could shed light on its ecological role and contributions to the microbiome's functional diversity." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRQI00000000.1 Bac0019104 Dielma fastidiosa strain AF31-27BH "Dielma fastidiosa strain AF31-27BH is a Gram-negative, nonsporulating rod-shaped bacterium that thrives under anaerobic conditions, with an optimal growth temperature of 30.0°C. This strain's Gram-negative classification indicates a complex cell wall structure, which may influence its interactions with the surrounding environment. The rod shape is characteristic of many bacteria, contributing to its motility and surface area for nutrient absorption.↵↵The requirement for anaerobic conditions suggests that D. fastidiosa strain AF31-27BH is adapted to environments where oxygen is limited, potentially leading to unique metabolic pathways that differ from its aerobic counterparts. The optimal growth temperature of 30.0°C indicates that this strain may be well-suited to moderate-temperature environments, possibly including soil or sediment layers where organic material is abundant.↵↵The absence of sporulation in this strain implies a reliance on vegetative growth for survival and reproduction, which may affect its resilience to environmental stressors. Understanding the traits of D. fastidiosa strain AF31-27BH can provide insights into its ecological roles, particularly in anaerobic habitats. This bacterium may contribute to nutrient cycling or organic matter decomposition in such environments, highlighting its potential importance in microbial community dynamics and ecosystem functioning." Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Dielma Dielma fastidiosa negative Rod Yes anaerobic 30 Nonsporulating 1034346 QRQL00000000.1 Bac0019105 Roseburia intestinalis strain AF31-21AC "Roseburia intestinalis strain AF31-21AC is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph in anaerobic conditions. This strain is optimally active at 37.0°C, aligning with the typical temperature of the mammalian gut environment, where it predominantly resides as part of the animal intestinal microflora.↵↵As a member of the gut microbiota, R. intestinalis plays a crucial role in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids, which are essential for maintaining gut health and supporting metabolic processes. Its anaerobic nature underscores its adaptation to the low-oxygen conditions prevalent in the intestinal tract, where it can effectively compete with other microbial inhabitants.↵↵The presence of R. intestinalis in the gut ecosystem suggests potential implications for host health, particularly in relation to metabolic and immune functions. Further studies on this strain could elucidate its specific contributions to gut homeostasis and its interactions with the host and other microbial species. Understanding the dynamics of R. intestinalis in the gastrointestinal environment could provide insights into its role in promoting health and preventing dysbiosis in animal hosts." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia intestinalis Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 166486 QRQN00000000.1 Bac0019106 Dorea formicigenerans strain AF31-13BH "Dorea formicigenerans strain AF31-13BH is a Gram-positive anaerobic bacterium that resides in the gut environment. This microbe is characterized by its ability to survive and thrive in low-oxygen conditions, which is typical for many gut-associated bacteria. Dorea formicigenerans is known for its role in the fermentation of dietary fibers and other complex carbohydrates, contributing to the overall metabolic processes within the gut microbiome.↵↵The anaerobic nature of Dorea formicigenerans strain AF31-13BH suggests that it is adapted to the unique chemical and physical conditions of the gastrointestinal tract, where oxygen levels are minimal. Its presence in the gut highlights the importance of such microorganisms in maintaining gut health and influencing the host's metabolic functions. ↵↵Furthermore, the ability of this strain to ferment various substrates may play a significant role in the production of short-chain fatty acids (SCFAs), which are crucial for gut health and have been linked to various physiological benefits, including anti-inflammatory effects and enhanced gut barrier function. This underscores the potential significance of Dorea formicigenerans strain AF31-13BH in the context of gut microbial ecology and its contributions to host health through metabolic interdependencies within the intestinal microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QRQQ00000000.1 Bac0019107 Megamonas rupellensis strain AF29-2 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas rupellensis No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 491921 QRST00000000.1 Bac0019108 Phocaeicola vulgatus strain AF29-13 "Phocaeicola vulgatus strain AF29-13 is a Gram-positive, rod-shaped bacterium that exists as single cells and is classified as an anaerobe, indicating its reliance on environments devoid of oxygen for growth. This strain is host-associated, suggesting a symbiotic or commensal relationship with a specific host organism, though the precise nature of this association is not detailed in the provided traits.↵↵As a member of the genus Phocaeicola, strain AF29-13 is expected to contribute to complex microbial communities, potentially playing a role in nutrient cycling or metabolic processes within its host's microbiome. The anaerobic nature of this strain may also suggest adaptations that allow it to thrive in low-oxygen environments typically found in certain gastrointestinal tracts or other host-associated niches.↵↵Further studies could elucidate the specific metabolic pathways utilized by Phocaeicola vulgatus strain AF29-13, which may provide insights into its functional role within its habitat. Understanding the interactions between this bacterium and its host may also reveal important aspects of microbial ecology and host health, particularly in the context of anaerobic microbial diversity and function." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRSX00000000.1 Bac0019109 Mediterraneibacter gnavus strain AF27-4BH "Mediterraneibacter gnavus strain AF27-4BH is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, a trait that aligns with its habitat within the animal intestinal microflora. ↵↵As a member of the gut microbiota, M. gnavus strain AF27-4BH may play a role in the complex interactions among microbial populations and the host's digestive processes. The anaerobic requirement suggests that it is well-adapted to the low-oxygen environment of the intestine, where it could contribute to the fermentation of dietary fibers and the production of short-chain fatty acids, which are beneficial for gut health.↵↵Understanding the specific metabolic pathways and interactions of M. gnavus strain AF27-4BH within the intestinal ecosystem could offer insights into its potential contributions to host metabolism and overall health, particularly in relation to the balance of gut microbiota and its implications for digestive health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 QRTJ00000000.1 Bac0019110 Bacteroides sp. AF27-33 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF27-33 2292194 QRTK00000000.1 Bac0019111 Ruminococcus bromii strain AF25-7LB "Ruminococcus bromii strain AF25-7LB is a Gram-positive, cocci-shaped anaerobic bacterium primarily found in the feces and rectal mucosa of its host. As a member of the microbiota, this strain plays a significant role in the fermentation processes within the gastrointestinal tract. The anaerobic nature of R. bromii suggests that it thrives in oxygen-deprived environments, making it well-adapted to the anaerobic conditions of the intestines. ↵↵The presence of R. bromii in fecal samples indicates its potential contribution to the complex microbial ecosystem, where it may participate in the breakdown of dietary fibers and other complex carbohydrates. This fermentation process is crucial for the production of short-chain fatty acids (SCFAs), which are important for maintaining gut health and providing energy to colonocytes.↵↵By residing in the rectal mucosa and fecal matter, Ruminococcus bromii strain AF25-7LB may also play a role in the host's immune regulation and overall gut homeostasis. The unique habitat of this strain highlights its potential significance in the gut microbiome, where interactions with other microbial species could influence metabolic pathways and host health. Further research into this strain may provide insight into its functions and contributions to gut ecology, particularly regarding its role in fiber digestion and SCFA production." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bromii Positive Cocci Anaerobe feces; rectal mucosa 40518 QRUA00000000.1 Bac0019112 Phocaeicola vulgatus strain AF25-30LB "Phocaeicola vulgatus strain AF25-30LB is a Gram-positive, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobe, indicating its growth occurs in environments devoid of oxygen. This strain is host-associated, suggesting a relationship with a specific host organism, though the nature of this association is not detailed in the available data.↵↵The rod shape and anaerobic nature of P. vulgatus AF25-30LB may contribute to its ecological niche within the host's microbiome, where it could play a role in various metabolic processes. Anaerobic bacteria often participate in fermentation pathways, which can influence nutrient absorption and overall gut health in host organisms. ↵↵Moreover, the presence of P. vulgatus in host-associated environments may indicate its potential involvement in the maintenance of microbial community stability or in the competition with other microbial species. The solitary arrangement of cells may also suggest a strategy for survival in specific microenvironments within the host, where competition for resources can be intense. Overall, P. vulgatus strain AF25-30LB exemplifies the diversity of microbial life and its adaptive strategies within host-associated habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRUD00000000.1 Bac0019113 Blautia obeum strain AF25-21 "Blautia obeum strain AF25-21 is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, primarily residing in the intestinal microflora of animals. This strain thrives in anaerobic environments, utilizing organic compounds as energy sources, which is characteristic of many gut-associated bacteria. Its presence in the intestinal tract suggests a potential role in fermentation processes and the maintenance of gut health, possibly contributing to the digestion of complex carbohydrates and the synthesis of short-chain fatty acids. ↵↵Given its habitat and metabolic capabilities, Blautia obeum strain AF25-21 may play a significant role in gut microbiome interactions, influencing both nutrient absorption and microbial community dynamics. The strain's anaerobic nature aligns with the conditions of the intestinal environment, where oxygen levels are low, further indicating its adaptation to this niche. Understanding the specific contributions of Blautia obeum strain AF25-21 to the gut ecosystem could provide insights into its potential benefits in promoting a balanced microbiota, which is essential for host health and well-being." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QRUH00000000.1 Bac0019114 Dorea formicigenerans strain AF25-11 "Dorea formicigenerans strain AF25-11 is a Gram-positive anaerobic bacterium predominantly found in the gut environment. As a member of the Dorea genus, this strain contributes to the complex microbial community within the gastrointestinal tract, where it plays a role in the fermentation of dietary fibers and other carbohydrates. ↵↵The anaerobic nature of D. formicigenerans strain AF25-11 suggests that it thrives in low-oxygen conditions, which are typical of the gut environment, where it may engage in various metabolic processes that support both its survival and the health of its host. The presence of this strain in the gut microbiota underscores its potential significance in digestive health, particularly in the breakdown of complex polysaccharides that can contribute to short-chain fatty acid production, a crucial aspect of gut metabolism.↵↵Moreover, the ability of D. formicigenerans strain AF25-11 to coexist with other gut microbes indicates its potential role in maintaining microbial diversity and stability within the gut ecosystem. This diversity is essential for a balanced microbiota, which can influence host metabolism and immune function. Understanding the specific functions and interactions of D. formicigenerans strain AF25-11 within the gut microbiome may provide insights into its contributions to host health and the overall dynamics of the gut microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QRUK00000000.1 Bac0019115 Segatella copri strain AF24-12 "Segatella copri strain AF24-12 is a Gram-negative, anaerobic bacterium predominantly found in the gut environment. This strain is part of the diverse microbial community residing in the gastrointestinal tract, suggesting its potential role in gut health and homeostasis. The anaerobic nature of S. copri strain AF24-12 indicates that it thrives in oxygen-depleted conditions typical of the intestinal milieu, where it may contribute to various metabolic processes, including fermentation and nutrient utilization.↵↵As a member of the gut microbiota, S. copri strain AF24-12 likely engages in symbiotic interactions with the host, which may influence host metabolism and immune responses. The presence of such anaerobic bacteria in the gut underscores the importance of microbial diversity in maintaining gastrointestinal health and functionality. Future studies could elucidate the specific metabolic pathways employed by this strain, potentially revealing its contributions to the overall metabolic network of the gut microbiome and its interactions with other microbial species. Understanding the role of S. copri strain AF24-12 within the gut ecosystem may provide insights into the complex relationships between diet, microbial inhabitants, and host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe gut 165179 QRVA00000000.1 Bac0019116 Eubacterium sp. AF22-8LB Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AF22-8LB 2292232 QRVI00000000.1 Bac0019117 Bacteroides cellulosilyticus strain AF22-3AC "Bacteroides cellulosilyticus strain AF22-3AC is a Gram-negative anaerobic bacterium predominantly found in the gastrointestinal tract. This microbe is notable for its capacity to degrade complex carbohydrates, particularly cellulose, which positions it as a key player in the microbial fermentation processes within the gut ecosystem. By utilizing cellulose as a substrate, B. cellulosilyticus can contribute to the breakdown of plant materials, thereby aiding in nutrient cycling and promoting the overall health of the gut microbiome.↵↵As an anaerobe, B. cellulosilyticus thrives in environments devoid of oxygen, which is characteristic of the gastrointestinal tract where it coexists with a diverse community of microorganisms. The metabolic activities of this strain are integral to the digestion of dietary fibers, offering insights into its potential role in enhancing nutrient absorption and supporting host metabolism. ↵↵Furthermore, the ability of B. cellulosilyticus to hydrolyze cellulose not only highlights its importance in the gut but may also have implications for biotechnological applications, such as the development of biofuels or other bio-based products from lignocellulosic materials. These traits underscore the significance of Bacteroides cellulosilyticus strain AF22-3AC in both ecological contexts and potential industrial applications, illustrating the interconnectedness of gut microbiota and broader biogeochemical cycles." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus Negative Anaerobe gastrointestinal tract 246787 QRVJ00000000.1 Bac0019118 Bacteroides xylanisolvens strain AF21-6AC "Bacteroides xylanisolvens strain AF21-6AC is a Gram-negative, anaerobic bacterium characterized by its capacity to thrive in environments devoid of oxygen. This strain is part of the Bacteroides genus, which is known for its role in the human gut microbiome and its involvement in the breakdown of complex carbohydrates. As an anaerobe, B. xylanisolvens strain AF21-6AC relies on fermentation processes for energy production, effectively contributing to the degradation of xylan, a major component of plant cell walls. ↵↵The ability of this strain to metabolize xylan highlights its potential utility in biotechnological applications, particularly in the context of biomass conversion and renewable energy production. By efficiently breaking down xylan, B. xylanisolvens may play a significant role in the fermentation of plant materials, thereby enhancing the yield of biofuels and other valuable bioproducts. Furthermore, the presence of such anaerobic bacteria in the gut microbiome may be instrumental in maintaining gut health through their contributions to the fermentation of dietary fibers, which can positively influence the host's metabolic processes and overall well-being. ↵↵This strain exemplifies the ecological importance of anaerobic bacteria in both natural and engineered systems, emphasizing their dual role in nutrient cycling and potential applications in sustainable practices." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 QRVO00000000.1 Bac0019119 Bacteroides uniformis strain AF21-53 "Bacteroides uniformis strain AF21-53 is a Gram-negative anaerobic bacterium primarily residing in the gastrointestinal tract of various hosts. This microbe is adapted to the gut luminal niche, playing a significant role in the complex microbial ecosystem of the intestinal tract. As an anaerobe, B. uniformis strain AF21-53 thrives in environments devoid of oxygen, which is characteristic of the gut environment where it contributes to various metabolic processes, including the fermentation of complex carbohydrates.↵↵The presence of Bacteroides uniformis strain AF21-53 in the gut highlights its potential involvement in digestive health and nutrient absorption. Its ability to ferment polysaccharides suggests a role in breaking down dietary fibers, which can influence gut health and the overall metabolic profile of the host. Furthermore, the interactions of this strain with other gut microbes may contribute to maintaining a balanced microbiome, which is crucial for host health. Understanding the specific functions and interactions of B. uniformis strain AF21-53 may provide insight into its contributions to gut homeostasis and its potential implications for nutritional science and microbiome research." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QRVP00000000.1 Bac0019120 Bifidobacterium adolescentis strain AF21-27 "Bifidobacterium adolescentis strain AF21-27 is a Gram-positive, nonsporulating, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C, aligning with physiological conditions found in the gastrointestinal tracts of warm-blooded hosts, where it is primarily associated. As an anaerobe, B. adolescentis strain AF21-27 requires an oxygen-free environment for growth and metabolic processes, reflecting its adaptation to the anaerobic conditions prevalent in the intestines.↵↵Bifidobacterium species, including strain AF21-27, are often recognized for their potential beneficial roles in gut health, contributing to the maintenance of a balanced microbiota. While the specific functional attributes of strain AF21-27 remain to be fully elucidated, its habitat and anaerobic nature suggest a possible involvement in carbohydrate fermentation processes, which may yield short-chain fatty acids beneficial for host health. The presence of such bacteria in the gut microbiome highlights their potential significance in digestive health and their interactions with host immune responses. Further research may reveal the ecological roles of this strain within the complex microbial communities of the gastrointestinal tract, providing insights into its contributions to host-microbe symbiosis." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 QRVT00000000.1 Bac0019121 Mitsuokella sp. AF21-1AC Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Mitsuokella Mitsuokella sp. AF21-1AC 2292235 QRVW00000000.1 Bac0019122 Bacteroides ovatus strain AF20-9LB "Bacteroides ovatus strain AF20-9LB is a Gram-negative, anaerobic bacterium predominantly found in the gut microbiota of various hosts. This strain plays a crucial role in the degradation of complex carbohydrates, contributing to the fermentation processes within the gastrointestinal tract. As an anaerobe, Bacteroides ovatus AF20-9LB thrives in low-oxygen environments, which are characteristic of the gut environment, where it interacts with other microbial species to maintain a balanced microbiome.↵↵The presence of Bacteroides species, including strain AF20-9LB, is often associated with the breakdown of polysaccharides, leading to the production of short-chain fatty acids (SCFAs) that provide energy to host cells and have various health benefits. The metabolic activities of this strain may influence host health by modulating immune responses and contributing to gut homeostasis. ↵↵Understanding the specific traits of Bacteroides ovatus strain AF20-9LB can provide insights into the complex interactions within the gut microbiome and highlight its potential role in the overall metabolic processes of the host. Further research into this strain may reveal additional functions or contributions to gut health that are significant in the context of microbial ecology and human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 QRVZ00000000.1 Bac0019123 Phocaeicola vulgatus strain AF20-10 "Phocaeicola vulgatus strain AF20-10 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement and is classified as an anaerobe, indicating its ability to thrive in environments devoid of oxygen. This strain is host-associated, suggesting a specific ecological relationship with its host organism, although the nature of this association is not detailed in the provided data.↵↵The Gram-positive characteristic of P. vulgatus AF20-10 implies a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in anaerobic conditions. The rod shape is a common morphological feature within its genus, potentially facilitating its survival and colonization within the host environment. ↵↵The anaerobic nature of P. vulgatus AF20-10 underscores its adaptation to niches where oxygen is limited, possibly indicating a role in fermentation processes or other metabolic pathways that occur in anaerobic ecosystems. This trait may also suggest that the bacterium plays a role in the breakdown of complex organic materials, contributing to nutrient cycling within the host environment.↵↵Understanding the specific ecological role of P. vulgatus strain AF20-10 may provide insights into its potential contributions to the microbiome of its host, particularly in terms of metabolic interactions and overall host health. Further studies could elucidate its functional impacts on the host's physiology and the broader implications for microbial diversity in host-associated ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRWE00000000.1 Bac0019124 Dorea formicigenerans strain AF19-4AC "Dorea formicigenerans strain AF19-4AC is a Gram-positive, anaerobic bacterium primarily inhabiting the gut environment. This strain is part of a wider group of microorganisms known for their role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for maintaining gut health. As an anaerobe, D. formicigenerans strain AF19-4AC thrives in oxygen-depleted conditions, characteristic of the gastrointestinal tract, where it contributes to the complex microbial ecosystem.↵↵The metabolic capabilities of this strain align with its gut habitat, enabling it to interact synergistically with other gut microbiota. Such interactions are essential for the breakdown of complex carbohydrates, thereby facilitating nutrient absorption and influencing host metabolism. The presence of D. formicigenerans and its metabolic products may also play a role in modulating the gut environment, potentially affecting pH levels and inhibiting pathogenic organisms.↵↵Understanding the specific traits and functions of Dorea formicigenerans strain AF19-4AC provides valuable insights into the intricate relationships within the gut microbiome. Future research could elucidate its contributions to gut health and disease prevention, highlighting the importance of anaerobic microbes in maintaining a balanced intestinal ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QRWH00000000.1 Bac0019125 Bacteroides uniformis strain AF19-23 "Bacteroides uniformis strain AF19-23 is a Gram-negative anaerobic bacterium primarily located in the gastrointestinal tract, particularly within the gut luminal niche of various hosts. This strain is part of the Bacteroides genus, which is known for its significant role in the complex microbiota of the intestinal tract. As an anaerobe, B. uniformis strain AF19-23 thrives in environments devoid of oxygen, allowing it to contribute to the fermentation processes that are crucial for the metabolism of dietary fibers and other complex carbohydrates.↵↵The presence of Bacteroides uniformis in the gut is indicative of its potential functions in promoting gut health and maintaining microbial diversity. Its metabolic activities may facilitate the breakdown of polysaccharides, leading to the production of short-chain fatty acids, which are beneficial for colonic health and can serve as energy sources for intestinal epithelial cells. Moreover, the ability of this strain to inhabit the gut luminal niche underscores its adaptation to the anaerobic conditions prevalent in the intestines, where it likely interacts with other microbes to form a balanced and functional microbiome ecosystem.↵↵Understanding the specific traits of Bacteroides uniformis strain AF19-23 may provide insights into its ecological role and contributions to host health, particularly in relation to nutrient absorption and the modulation of immune responses in the gastrointestinal environment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QRWL00000000.1 Bac0019126 Bacteroides clarus strain AF19-1AC "Bacteroides clarus strain AF19-1AC is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. This strain is part of the Bacteroides genus, which is known for its role in the complex microbiota of various ecosystems, particularly within the gastrointestinal tracts of mammals. As an anaerobe, Bacteroides clarus strain AF19-1AC contributes to the fermentation processes that occur in anaerobic conditions, facilitating the breakdown of complex polysaccharides into simpler compounds. ↵↵The Gram-negative nature of this strain suggests that it possesses a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may influence its interaction with the host environment and other microorganisms. The metabolic pathways utilized by Bacteroides clarus strain AF19-1AC are likely adapted to anaerobic conditions, enabling it to utilize various substrates for growth while producing short-chain fatty acids as metabolic byproducts. These fatty acids play a significant role in maintaining gut health and influencing host metabolism.↵↵Given its anaerobic requirement and Gram-negative characteristics, Bacteroides clarus strain AF19-1AC may occupy a niche within the microbiome that aids in nutrient recovery and energy production in environments where oxygen is limited. This ecological role highlights the importance of anaerobic bacteria in the overall functioning of microbial communities and their potential contributions to host health and nutrient cycling." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides clarus Negative Anaerobe 626929 QRWP00000000.1 Bac0019127 Mediterraneibacter gnavus strain AF19-16AC "Mediterraneibacter gnavus strain AF19-16AC is a Gram-positive, nonsporulating coccus that thrives in anaerobic environments, particularly within the intestinal microflora of animals. This strain exhibits chemoheterotrophic metabolism, utilizing organic compounds as its energy source, and it has an optimal growth temperature of 37.0°C, which aligns with the physiological conditions of the host's intestinal tract.↵↵As a member of the gut microbiota, Mediterraneibacter gnavus strain AF19-16AC likely plays a role in the complex ecosystem of the intestines, contributing to metabolic processes and possibly influencing host health. Its anaerobic requirement suggests that it may engage in interactions with other microbial populations, facilitating nutrient cycling and maintaining the balance of the gut microbiome. The specific adaptations of this strain to its habitat highlight the intricate relationships between gut-associated microbes and their animal hosts, potentially influencing digestive efficiency and overall gut health. Further research into this strain may provide insights into its specific functions and contributions to the intestinal ecosystem." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 QRWQ00000000.1 Bac0019128 Agathobacter rectalis strain AF18-16LB "Agathobacter rectalis strain AF18-16LB is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph under anaerobic conditions, with an optimal growth temperature of 37.0°C. This microbe is isolated from various habitats, indicating its versatility and potential adaptability to different environmental contexts. ↵↵As a member of the Agathobacter genus, strain AF18-16LB contributes to the complex microbial communities found in anaerobic environments, such as the gastrointestinal tracts of mammals. Its chemoheterotrophic metabolism suggests that it relies on organic compounds as both carbon and energy sources, which positions it as an important player in the degradation of organic matter. ↵↵The ability of Agathobacter rectalis to survive and proliferate in anaerobic conditions highlights its potential role in nutrient cycling within its habitat. By metabolizing substrates that are often overlooked by aerobic microorganisms, this strain may influence the overall microbial ecosystem dynamics and contribute to the maintenance of microbial diversity in its environment. Understanding the specific interactions and functions of Agathobacter rectalis strain AF18-16LB could provide insights into its ecological significance, particularly in anaerobic habitats where it may play a role in organic matter decomposition and nutrient availability." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QRXG00000000.1 Bac0019129 Phocaeicola vulgatus strain AF18-14 "Phocaeicola vulgatus strain AF18-14 is a Gram-positive, rod-shaped bacterium that exists as single cells and is categorized as an anaerobe, indicating that it thrives in environments devoid of oxygen. This strain is host-associated, suggesting a relationship with specific hosts, potentially contributing to the microbial communities found within them.↵↵As a member of the genus Phocaeicola, this strain may participate in various metabolic processes that are essential to the host's gut microbiome. While the specifics of its metabolic capabilities remain uncharacterized, its anaerobic nature implies that it may play a role in fermentation processes associated with the digestion of complex carbohydrates. Given the ecological role of closely related species in maintaining gut health and stability, P. vulgatus strain AF18-14 may similarly contribute to the overall functionality of the gut ecosystem by influencing nutrient availability and microbial diversity.↵↵Understanding the traits and behaviors of P. vulgatus strain AF18-14 can provide insights into the dynamics of host-associated microbial communities and the potential synergies between such bacteria and their hosts. Further exploration of this strain's interactions within its habitat could enhance our knowledge of its role in health and disease states associated with host organisms." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRXI00000000.1 Bac0019130 [Clostridium] leptum strain AF17-9 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae [Clostridium] leptum feces; gut; rectal mucosa 1535 QRXM00000000.1 Bac0019131 Bacteroides cellulosilyticus strain AF17-25 "Bacteroides cellulosilyticus strain AF17-25 is a Gram-negative, anaerobic bacterium that inhabits the gastrointestinal tract. This strain is part of the Bacteroides genus, which is known for its significant role in the digestion of complex carbohydrates within the human gut and other mammalian intestines. As a strict anaerobe, B. cellulosilyticus strain AF17-25 thrives in oxygen-depleted environments, which is characteristic of the gut microbiota. ↵↵The unique metabolic capabilities of Bacteroides species, including strain AF17-25, enable them to utilize a variety of polysaccharides, including cellulose, enhancing the breakdown of dietary fibers and contributing to overall host health. By fermenting these complex carbohydrates, B. cellulosilyticus strain AF17-25 aids in the production of short-chain fatty acids (SCFAs), which are beneficial for gut health and energy homeostasis in the host. ↵↵Furthermore, the presence of such bacteria in the gastrointestinal tract underscores the intricate symbiotic relationship between gut microbiota and their hosts, highlighting their potential role in nutrient absorption and the maintenance of gut homeostasis. Understanding the specific contributions of B. cellulosilyticus strain AF17-25 to gut microbiome dynamics could provide insights into its functional importance within the gastrointestinal ecosystem and its potential applications in probiotic development or dietary interventions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides cellulosilyticus Negative Anaerobe gastrointestinal tract 246787 QRXS00000000.1 Bac0019132 Bacteroides uniformis strain AF17-20 "Bacteroides uniformis strain AF17-20 is a Gram-negative, anaerobic bacterium primarily located within the gastrointestinal tract, particularly in the gut luminal niche. This strain is part of the larger Bacteroidetes phylum, which is known for its role in the digestion of complex carbohydrates and its contribution to the gut microbiome. ↵↵As an anaerobe, Bacteroides uniformis strain AF17-20 thrives in environments devoid of oxygen, which is characteristic of the intestinal tract where it contributes to the breakdown of dietary fibers and other polysaccharides. This metabolic capability plays a crucial role in maintaining gut health, as it aids in nutrient absorption and supports the overall balance of the gut microbiota. ↵↵The presence of Bacteroides uniformis strain AF17-20 in the gut may influence host metabolism and immune responses, potentially highlighting its significance in the maintenance of intestinal homeostasis. Understanding the specific functions and interactions of this strain within the gut ecosystem can provide insights into the complex dynamics of gut microbiota and their implications for human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QRXV00000000.1 Bac0019133 Bacteroides stercoris strain AF16-30 "Bacteroides stercoris strain AF16-30 is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. As a member of the Bacteroides genus, which is prevalent in the gastrointestinal tracts of various organisms, this strain likely plays a significant role in the degradation of complex carbohydrates and contributes to the overall microbial community dynamics within its niche. ↵↵Given its anaerobic nature, B. stercoris strain AF16-30 is adapted to fermentative metabolism, utilizing organic substrates present in its environment to generate energy. This metabolic capability may facilitate the breakdown of dietary fibers, leading to the production of short-chain fatty acids, which are vital for host health and provide energy to colonocytes. ↵↵Moreover, the Gram-negative cell wall structure of B. stercoris strain AF16-30, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, could influence its interactions with host and other microbial species. This structural feature may also play a role in the organism's resilience to environmental stresses encountered within the anaerobic conditions of the gut.↵↵Understanding the traits of Bacteroides stercoris strain AF16-30 can contribute to a broader comprehension of gut microbiota interactions and their implications for host metabolism and health. Its anaerobic lifestyle and metabolic functions may provide insights into the balance of microbial communities necessary for maintaining intestinal homeostasis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 QRXZ00000000.1 Bac0019134 Odoribacter splanchnicus strain AF16-14 "Odoribacter splanchnicus strain AF16-14 is a Gram-negative bacterium that is a component of healthy microbiota. This strain belongs to the genus Odoribacter, which is characterized by its role in the human microbiome. While specific metabolic or functional traits of strain AF16-14 are not provided, members of the Odoribacter genus are generally associated with the fermentation of carbohydrates and the production of short-chain fatty acids, which can have beneficial effects on gut health.↵↵The presence of Odoribacter splanchnicus within the healthy microbiota suggests that it may play a role in maintaining gut homeostasis and contributing to the overall balance of microbial communities. Additionally, as part of the diverse consortium of gut microbes, this strain may participate in competitive interactions with other microorganisms, potentially influencing microbial diversity and resilience in the intestinal tract.↵↵Understanding the specific contributions of Odoribacter splanchnicus strain AF16-14 to gut health may provide insights into its ecological role and its potential utility in probiotic applications or therapeutic interventions aimed at restoring microbial balance in dysbiotic conditions. Further research is warranted to elucidate the functional capabilities and interactions of this strain within the complex ecosystem of the human gut microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter splanchnicus negative healthy microbiota 28118 QRYC00000000.1 Bac0019135 Paraprevotella clara strain AF15-8 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella clara 454154 QRYE00000000.1 Bac0019136 Holdemanella biformis strain AF15-20 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemanella Holdemanella biformis feces 1735 QRYQ00000000.1 Bac0019137 Phocaeicola vulgatus strain AF14-8 "Phocaeicola vulgatus strain AF14-8 is a Gram-positive, rod-shaped bacterium that predominantly exists in a single-cell arrangement and is classified as an anaerobe, indicating its metabolic processes occur in the absence of oxygen. This strain is host-associated, suggesting a specific relationship with a particular host organism, though the nature of this association is not detailed in the available traits.↵↵As a member of the genus Phocaeicola, strain AF14-8 may play a role in the microbial ecosystems within its host, contributing to various physiological processes, including fermentation and nutrient absorption. The anaerobic nature of this microbe implies that it may thrive in environments rich in organic substrates, where it can utilize fermentation pathways for energy generation. ↵↵Understanding the specific interactions of Phocaeicola vulgatus strain AF14-8 within its host environment could provide insights into its potential functions in health and disease, as well as its role in maintaining microbial diversity. The presence of this strain highlights the importance of anaerobic bacteria in host-associated communities, where they may fulfill essential roles in metabolic processes and contribute to the overall microbiome stability. Further research into the ecological impact of this strain could shed light on its contributions to the host's health and the dynamics of its associated microbial community." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QRYT00000000.1 Bac0019138 Bacteroides uniformis strain AF14-42 "Bacteroides uniformis strain AF14-42 is a Gram-negative anaerobic bacterium primarily found within the gastrointestinal tract, specifically inhabiting the gut luminal niche of various hosts. This strain is part of the diverse community of gut microbiota, which plays a crucial role in maintaining intestinal health and homeostasis. Bacteroides uniformis is recognized for its ability to metabolize a range of complex carbohydrates, contributing to the fermentation processes within the gut. ↵↵The anaerobic nature of B. uniformis strain AF14-42 suggests it thrives in low-oxygen environments, typical of the intestinal tract, where it may interact with other microbial communities and host metabolic pathways. Research into this strain can provide insights into its specific functional roles in gut health and its potential contributions to the host's overall metabolism. Understanding the ecological interactions and metabolic capabilities of Bacteroides uniformis strain AF14-42 enhances our knowledge of gut microbiome dynamics and its implications for host health. This strain exemplifies the intricate relationships between gut bacteria and their hosts, highlighting the importance of anaerobic microorganisms in digestive processes and overall metabolic health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QRZC00000000.1 Bac0019139 Bacteroides clarus strain AF14-27 "Bacteroides clarus strain AF14-27 is a Gram-negative, anaerobic bacterium belonging to the genus Bacteroides. Characterized by its ability to thrive in oxygen-free environments, this strain is adapted to anaerobic conditions, which significantly influences its metabolic processes and ecological roles. ↵↵As a member of the Bacteroides genus, strain AF14-27 is likely involved in the breakdown of complex carbohydrates, contributing to the fermentation processes in the gastrointestinal tract of various hosts. The Gram-negative cell wall structure of Bacteroides clarus, which consists of a thin peptidoglycan layer surrounded by an outer membrane, may play a role in its resilience in anaerobic conditions.↵↵The ecological significance of Bacteroides clarus strain AF14-27 extends to its potential interactions within microbial communities, particularly in relation to maintaining gut health and homeostasis. Given the known roles of Bacteroides species in the fermentation of dietary fibers, strain AF14-27 may contribute to the production of short-chain fatty acids, which can be beneficial for host metabolism and immune function. Further studies are warranted to elucidate the specific metabolic pathways and interactions of this strain within its ecological niche, as well as its potential contributions to the overall health of the microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides clarus Negative Anaerobe 626929 QRZG00000000.1 Bac0019140 Enterocloster bolteae strain AF14-18 "Enterocloster bolteae strain AF14-18 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits anaerobic growth and functions as a chemoheterotroph. This strain is capable of utilizing various organic compounds as energy sources, reflecting its adaptability to diverse environmental conditions. Its anaerobic requirement suggests that it thrives in oxygen-depleted habitats, which may include the gastrointestinal tracts of various hosts or other low-oxygen environments.↵↵The ability of Enterocloster bolteae strain AF14-18 to metabolize a range of substrates highlights its potential role in biogeochemical cycles, particularly in anaerobic ecosystems where organic material decomposition is crucial. Understanding this strain's metabolic capabilities may provide insights into its ecological interactions within its habitat, potentially influencing microbial community dynamics and nutrient cycling processes. ↵↵Given its nonsporulating nature, Enterocloster bolteae strain AF14-18 may also exhibit sensitivity to environmental stresses that typically trigger sporulation in other bacterial species. This characteristic could limit its survival in certain harsh conditions but may also facilitate its rapid growth and reproduction in stable anaerobic niches. Overall, the traits of Enterocloster bolteae strain AF14-18 position it as an important player in anaerobic environments, contributing to the complexity of microbial life and interactions within its ecological context." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster bolteae Positive Rod No 1 Anaerobic Chemoheterotroph Multiple Nonsporulating 208479 QRZM00000000.1 Bac0019141 Ruminococcus sp. AF14-10 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF14-10 2292247 QRZR00000000.1 Bac0019142 Bifidobacterium longum strain AF13-41 "Bifidobacterium longum strain AF13-41 is a Gram-positive, nonsporulating rod-shaped bacterium that typically exists in clusters, pairs, or as single cells. This anaerobic microbe thrives optimally at a temperature of 37.0°C, a condition that aligns with the physiological temperature of its host-associated habitat. ↵↵As a member of the Bifidobacterium genus, strain AF13-41 is adapted to living in environments rich in carbohydrates, where it plays a significant role in the fermentation of dietary fibers. The ability of this strain to form various cell arrangements may enhance its adaptability and functionality within the complex ecosystems of the host's gastrointestinal tract. ↵↵Given its anaerobic nature, B. longum strain AF13-41 is likely to contribute to the maintenance of gut homeostasis, supporting the balance of microbial communities while potentially influencing host health. This strain, like other bifidobacteria, may engage in metabolic activities that produce beneficial short-chain fatty acids, which can have implications for the host's metabolic processes and overall well-being. The specific characteristics of strain AF13-41 suggest it may play a significant role in the digestive health of its host, possibly offering insights into the functional diversity of gut microbiota in relation to health and nutrition." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles Nonsporulating Non-pathogenic 216816 QRZU00000000.1 Bac0019143 Agathobacter rectalis strain AF12-8 "Agathobacter rectalis strain AF12-8 is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives optimally at 37.0°C. This strain is classified as an anaerobe, indicating its growth and metabolic processes occur in environments devoid of oxygen. ↵↵The habitat of A. rectalis strain AF12-8 is diverse, suggesting its adaptability to various ecological niches. As a member of the gut microbiota, it likely plays a role in the fermentation of dietary components, contributing to the complex interactions within the microbial community. The anaerobic nature of this organism may also suggest its involvement in the breakdown of organic materials in oxygen-limited environments, which is critical for nutrient cycling.↵↵Understanding the traits and functional capabilities of A. rectalis strain AF12-8 may provide insights into its role in maintaining gut health and its potential applications in biotechnology, particularly in processes that require anaerobic fermentation. The adaptability of this strain to multiple habitats highlights its significance in ecological interactions and energy flow within microbial communities." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSAE00000000.1 Bac0019144 Dorea formicigenerans strain AF12-11 "Dorea formicigenerans strain AF12-11 is a Gram-positive, anaerobic bacterium that resides in the gut. This microbial species is noted for its ability to thrive in oxygen-deprived environments, which is characteristic of the intestinal habitat where it is typically found. The strain's anaerobic nature suggests a metabolic adaptation to fermentative processes, likely utilizing substrates present in the gut to generate energy.↵↵Dorea formicigenerans is part of a complex microbial community within the gastrointestinal tract, contributing to the overall metabolic functions and homeostasis of the gut ecosystem. Its presence may influence the fermentation of dietary fibers and other carbohydrates, potentially producing short-chain fatty acids (SCFAs) that are beneficial for host health. Additionally, as a member of the gut microbiota, Dorea formicigenerans may play a role in modulating the host's immune response and maintaining gut integrity.↵↵Understanding the ecological role of Dorea formicigenerans strain AF12-11 can provide insights into its potential contributions to gut health, particularly in the context of dietary influences and microbial interactions. This strain exemplifies the diversity of anaerobic bacteria adapted to the unique conditions of the gut, highlighting the importance of such microbes in broader ecological and physiological processes." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QSAJ00000000.1 Bac0019145 Bifidobacterium pseudocatenulatum strain AF11-18 "Bifidobacterium pseudocatenulatum strain AF11-18 is a Gram-positive anaerobic bacterium commonly found in the gastrointestinal tracts of adults and breastfed infants, as well as in various gut microbiomes, including those specific to infants and the Vietnamese population. This strain contributes to the complex microbial ecosystem of the gut, where it plays a role in maintaining intestinal health and influencing host metabolism.↵↵As an anaerobe, B. pseudocatenulatum strain AF11-18 thrives in environments devoid of oxygen, which is characteristic of the gut environment where it resides. The presence of this strain in the infant gut microbiota highlights its potential importance during early life, a critical period for the establishment of a healthy gut microbiome. Its role may be particularly significant in breastfed infants, where maternal milk provides prebiotic compounds that support the growth of beneficial microbes, including bifidobacteria.↵↵Research into B. pseudocatenulatum and similar strains has suggested that they may participate in various beneficial metabolic processes, including the fermentation of dietary fibers, which could enhance the availability of short-chain fatty acids and other metabolites beneficial for gut health. The specific presence of B. pseudocatenulatum strain AF11-18 in the Vietnamese gut microbiota may also indicate adaptations to local dietary patterns and health practices, further underscoring the ecological diversity and functional significance of bifidobacteria in human health." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudocatenulatum Positive Anaerobe gastrointestinal tracts of adults and breastfed infants; gut; gut microbiomes; infant gut; infant gut microbiota; Vietnamese gut microbiota 28026 QSAP00000000.1 Bac0019146 Segatella copri strain AF11-14 "Segatella copri strain AF11-14 is a Gram-negative anaerobic bacterium that predominantly inhabits the gut environment. Its classification as an anaerobe indicates that it thrives in oxygen-depleted conditions, which are typical of the intestinal microbiota. This strain contributes to the complex microbial community within the gastrointestinal tract, where it may play a role in various metabolic processes.↵↵As a member of the gut microbiome, Segatella copri strain AF11-14 could be involved in the fermentation of dietary fibers, producing short-chain fatty acids that are crucial for gut health and host metabolism. The presence of anaerobic bacteria like this strain is essential for maintaining a balanced gut ecosystem, as they can compete with pathogenic microorganisms and contribute to the overall homeostasis of the intestinal environment.↵↵Further investigations into the specific metabolic capabilities and interactions of Segatella copri strain AF11-14 within the gut microbiome could yield insights into its potential benefits for host health, particularly in relation to digestive efficiency and immune function. Understanding this strain's ecological role may provide valuable information on how gut microbial communities can be influenced by dietary and environmental factors." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella copri Negative Anaerobe gut 165179 QSAQ00000000.1 Bac0019147 Holdemanella biformis strain AF10-31 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemanella Holdemanella biformis feces 1735 QSAT00000000.1 Bac0019148 Faecalibacterium prausnitzii strain AF10-13 "Faecalibacterium prausnitzii strain AF10-13 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this strain relies on organic compounds for energy, positioning it within a niche of anaerobic environments where it likely plays a significant role in the degradation of complex carbohydrates. The anaerobic requirement suggests that F. prausnitzii strain AF10-13 is adapted to low-oxygen habitats, which are common in the gastrointestinal tracts of various host organisms.↵↵The ability to inhabit multiple environments underscores its ecological versatility, potentially contributing to diverse microbial communities. Given its presence in the gut microbiome, F. prausnitzii is known for its important role in maintaining gut health, although specific contributions of strain AF10-13 to this function are not detailed in the available data. The strain's metabolic capabilities may influence the fermentation processes within the gut, impacting short-chain fatty acid production and overall microbial balance.↵↵In summary, Faecalibacterium prausnitzii strain AF10-13 exemplifies a specialized anaerobic lifestyle that may provide insights into the functional dynamics of microbial communities in various habitats, particularly in the context of gastrointestinal health and disease prevention." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 QSAW00000000.1 Bac0019149 Lactobacillus amylovorus subsp. animalium strain AF08-3 "Lactobacillus amylovorus subsp. animalium strain AF08-3 is a Gram-positive, rod-shaped bacterium that typically forms chains and exhibits anaerobic growth. This strain is part of the diverse Lactobacillus genus, known for its role in fermentation and its presence in various habitats, suggesting a versatile ecological niche. ↵↵As an anaerobe, Lactobacillus amylovorus subsp. animalium strain AF08-3 thrives in environments devoid of oxygen, which may include gastrointestinal tracts of animals, fermented food products, or specific anaerobic biomes. The ability to form chains may enhance its stability within these environments and facilitate interactions with other microbial species, potentially contributing to complex community dynamics in microbial ecosystems. ↵↵The adaptability of this strain to multiple habitats indicates that it may play a significant role in various fermentation processes or contribute to the gut microbiota of host organisms. Understanding the ecological roles of strains like AF08-3 can provide insights into their functional contributions to microbial communities, particularly in relation to digestion and nutrient cycling. Further investigations into its metabolic capabilities and interactions with other microorganisms could reveal additional layers of complexity in its ecological function." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains 3378536 QSAX00000000.1 Bac0019150 Agathobacter rectalis strain AF06-19 "Agathobacter rectalis strain AF06-19 is a Gram-positive, rod-shaped bacterium that thrives as a chemoheterotroph in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain, notable for its nonsporulating nature, is adapted to various habitats, suggesting a degree of ecological versatility.↵↵As an anaerobic organism, A. rectalis strain AF06-19 relies on organic compounds for energy, which positions it within complex microbial communities where it may play a role in nutrient cycling. Its ability to inhabit multiple environments underscores its potential significance in various ecological niches, particularly in anaerobic conditions typical of the gastrointestinal tract.↵↵Understanding the metabolic capabilities and habitat adaptability of A. rectalis strain AF06-19 can provide insights into its function within microbial consortia, particularly in relation to nutrient breakdown and fermentation processes. This could lead to further investigations into its interactions with other microorganisms and its potential contributions to the stability and health of microbiomes in which it resides." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSAZ00000000.1 Bac0019151 Enterocloster asparagiformis strain AF04-15 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster asparagiformis caeca 333367 QSBM00000000.1 Bac0019152 Phocaeicola dorei strain OF04-10BH "Phocaeicola dorei strain OF04-10BH is a Gram-negative, non-sporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and requires anaerobic conditions for growth. This strain thrives optimally at 37.0°C, indicating a preference for temperatures that are consistent with mammalian body temperatures, which may suggest a potential association with warm-blooded hosts or environments influenced by such organisms.↵↵The habitat of Phocaeicola dorei strain OF04-10BH is described as multiple, indicating a versatile ecological niche, although specific environments are not detailed. Its anaerobic requirement suggests that this microbe may be involved in anaerobic fermentation processes, contributing to nutrient cycling in environments such as the gastrointestinal tract of animals or other anoxic habitats.↵↵Given its metabolic capabilities and growth conditions, Phocaeicola dorei strain OF04-10BH may play a role in the breakdown of complex organic materials under anaerobic conditions, which is crucial for maintaining the balance of microbial communities in its habitat. Understanding the ecological roles of such bacteria can provide insights into the functioning of anaerobic ecosystems and their contributions to overall microbial diversity and activity." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 357276 QSCE00000000.1 Bac0019153 Bacteroides stercorirosoris strain OF03-9BH Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercorirosoris 871324 QSCF00000000.1 Bac0019154 Blautia sp. OF03-15BH Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. OF03-15BH 2292287 QSCM00000000.1 Bac0019155 Bacteroides caccae strain OF02-6LB "Bacteroides caccae strain OF02-6LB is a Gram-negative, anaerobic bacterium that belongs to the genus Bacteroides. This strain is characterized by its ability to thrive in environments devoid of oxygen, which is typical for many members of the Bacteroides genus, known for their role in the human gut microbiota. The anaerobic nature of B. caccae OF02-6LB suggests a metabolic adaptation that allows it to utilize fermentation pathways for energy production in the absence of oxygen.↵↵Bacteroides species, including B. caccae, are often involved in the breakdown of complex polysaccharides, contributing to the fermentation processes within the gastrointestinal tract. This metabolic capacity is significant for host digestion, as it facilitates the degradation of dietary fibers and the production of short-chain fatty acids, which are important for gut health and host metabolism. ↵↵The specific traits of Bacteroides caccae strain OF02-6LB highlight its potential role in maintaining microbial diversity and stability within anaerobic environments, particularly in the human gut. Understanding the functional capacities of this strain may provide insights into its contributions to gut health and its interactions with other microbial communities. Further research could elucidate the precise mechanisms by which B. caccae OF02-6LB influences host-microbe interactions, emphasizing the importance of anaerobic bacteria in overall microbial ecology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe 47678 QSCS00000000.1 Bac0019156 [Clostridium] symbiosum strain OF01-1AC Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Otoolea [Clostridium] symbiosum 1512 QSDB00000000.1 Bac0019157 Ruminococcus sp. AM58-7XD Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM58-7XD 2292373 QSDN00000000.1 Bac0019158 Parabacteroides sp. AM58-2XD Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AM58-2XD 2292362 QSDP00000000.1 Bac0019159 Phocaeicola vulgatus strain AM51-1 "Phocaeicola vulgatus strain AM51-1 is a Gram-positive, anaerobic rod-shaped bacterium that typically exists as single cells in its natural habitat. This strain is host-associated, indicating a potential relationship with a specific host organism, although the exact nature of this association is not detailed in the available data. The anaerobic nature of P. vulgatus strain AM51-1 suggests that it thrives in environments devoid of oxygen, which is characteristic of many gut-associated microbes.↵↵The rod shape and single-cell arrangement are common features among various bacterial species, contributing to diverse functional roles in microbial communities. The host-associated lifestyle of P. vulgatus strain AM51-1 may imply involvement in processes such as fermentation or the metabolism of complex carbohydrates, which are crucial for nutrient cycling and host health. Understanding the specific interactions and contributions of this strain within its ecological niche can provide insights into the broader dynamics of microbial communities, particularly in anaerobic environments. ↵↵Further research could elucidate the specific roles of P. vulgatus strain AM51-1 in its host’s microbiome, potentially shedding light on its contributions to gut health and overall host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QSEC00000000.1 Bac0019160 Parabacteroides merdae strain AM48-24BH "Parabacteroides merdae strain AM48-24BH is a Gram-negative, anaerobic bacterium, which suggests it thrives in environments devoid of oxygen. This strain is part of the genus Parabacteroides, which is known for its association with the human gut microbiome. The anaerobic nature of P. merdae indicates that it likely plays a role in the fermentation processes typical of gut environments, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health.↵↵As a member of the Bacteroidetes phylum, P. merdae may also engage in syntrophic relationships with other gut microorganisms, facilitating nutrient exchange and metabolic cooperation. The strain's Gram-negative status implies the presence of an outer membrane, which may provide advantages in resisting antibiotics compared to Gram-positive bacteria. ↵↵Understanding the specific metabolic pathways and interactions of Parabacteroides merdae strain AM48-24BH within the gut ecosystem could provide insights into its role in maintaining gut health and its potential applications in probiotics or microbiome research. Furthermore, studying this strain could shed light on how anaerobic bacteria contribute to the complex interplay of microbial communities in the human gastrointestinal tract, emphasizing the importance of anaerobes in overall gut functionality and health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 46503 QSEO00000000.1 Bac0019161 Anaerobutyricum hallii strain AM48-23BH "Anaerobutyricum hallii strain AM48-23BH is a Gram-positive, nonsporulating bacterium that thrives under anaerobic conditions, exhibiting optimal growth at a temperature of 37.0 °C. As a chemoheterotroph, this strain derives its energy from organic compounds, highlighting its role in nutrient cycling within various habitats. ↵↵The ability of A. hallii to survive and proliferate in multiple environments suggests a versatile ecological niche, potentially contributing to diverse anaerobic processes. Given its anaerobic requirement, A. hallii may play a significant role in fermentative pathways, particularly in environments where organic matter is abundant and oxygen is limited, such as in the gastrointestinal tracts of animals or in sedimentary environments.↵↵The metabolic capabilities of A. hallii strain AM48-23BH may also provide insights into its potential interactions with other microorganisms in complex communities, particularly those involved in anaerobic digestion or bioconversion processes. Understanding its physiological traits could further elucidate its contributions to microbial ecosystems and potential applications in biotechnology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Anaerobutyricum hallii Positive No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 39488 QSEP00000000.1 Bac0019162 Agathobacter rectalis strain AM47-6BH "Agathobacter rectalis strain AM47-6BH is a Gram-positive, rod-shaped bacterium characterized as a nonsporulating, anaerobic chemoheterotroph with an optimal growth temperature of 37.0°C. This strain demonstrates the typical morphological and physiological properties associated with members of its genus, thriving in environments that support anaerobic metabolism. ↵↵As a chemoheterotroph, A. rectalis strain AM47-6BH relies on organic compounds for energy and carbon, suggesting a role in the degradation of complex organic materials in various habitats. The ability to grow optimally at 37.0°C indicates that this strain may be well-adapted to mammalian-associated environments, potentially linking it to the gastrointestinal tract or other anaerobic niches within host organisms.↵↵The diverse habitats in which A. rectalis strain AM47-6BH can be found may reflect its ecological versatility, allowing it to participate in various microbial communities. Its anaerobic nature further implies that it plays a role in anaerobic fermentation processes, contributing to the cycling of nutrients in these ecosystems. Overall, the presence of A. rectalis strain AM47-6BH in multiple habitats may underscore its importance in microbial interactions and metabolic pathways in anaerobic environments." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSES00000000.1 Bac0019163 Agathobacter rectalis strain AM44-1AT "Agathobacter rectalis strain AM44-1AT is a Gram-positive, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism and thrives in anaerobic conditions. This strain grows optimally at 37.0°C, suggesting a preference for physiological temperatures common to warm-blooded hosts. ↵↵As a member of the genus Agathobacter, this strain likely occupies diverse habitats, although specific environmental or ecological niches have not been detailed. The ability of A. rectalis strain AM44-1AT to utilize organic compounds for energy underscores its role in nutrient cycling within anaerobic environments, such as the gastrointestinal tract where it may contribute to the complex microbial community dynamics. ↵↵The anaerobic nature of this bacterium indicates its potential involvement in fermentation processes, which could be significant in the context of gut microbiota interactions and metabolic functions. Understanding the specific ecological roles of A. rectalis strain AM44-1AT may provide insights into its contributions to gut health and microbial balance, particularly in relation to its metabolic capabilities in various anaerobic habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSFB00000000.1 Bac0019164 Phocaeicola vulgatus strain AM43-4BH "Phocaeicola vulgatus strain AM43-4BH is a Gram-positive, rod-shaped anaerobic bacterium that predominantly exists in a host-associated habitat. This strain is characterized by its arrangement of single cells, which is typical for many anaerobes that thrive in specific ecological niches within host organisms. ↵↵As a member of the genus Phocaeicola, this strain is part of a broader group that has been implicated in various symbiotic relationships, potentially contributing to the microbial diversity within its associated host. The anaerobic nature of P. vulgatus strain AM43-4BH suggests that it may play a role in processes that occur in low-oxygen environments, such as the fermentation of complex carbohydrates, which can influence the host's metabolic processes and overall health.↵↵Understanding the specific interactions and functions of P. vulgatus strain AM43-4BH within its host could provide insight into the dynamics of microbial communities and their contributions to the host's physiological conditions. This underscores the importance of studying such strains, as they may offer key insights into the roles of anaerobic bacteria in maintaining host homeostasis and their potential implications in symbiotic relationships." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QSFK00000000.1 Bac0019165 Dorea formicigenerans strain AM42-8 "Dorea formicigenerans strain AM42-8 is a Gram-positive anaerobic bacterium predominantly found in the gut environment. This microbe is part of the diverse gut microbiota, which plays a crucial role in the digestion of complex carbohydrates and the fermentation of dietary fibers. Its anaerobic nature indicates that it thrives in oxygen-depleted conditions, typical of the intestinal tract, where it contributes to the overall metabolic processes of the community.↵↵As a member of the gut microbiome, Dorea formicigenerans strain AM42-8 may engage in the fermentation of polysaccharides, producing short-chain fatty acids (SCFAs) that are beneficial for host health. These SCFAs can provide energy to colonocytes, modulate immune responses, and maintain gut homeostasis. The presence of this strain in the gut highlights the importance of anaerobic bacteria in maintaining a balanced microbial ecosystem, which is essential for optimal digestive health.↵↵Given the increasing interest in gut microbiota and its implications for human health, the study of Dorea formicigenerans strain AM42-8 could provide insights into the functional roles of anaerobic microbes in digestion and the potential for therapeutic applications in restoring gut health. Understanding the interactions and contributions of such strains within the gut ecosystem can illuminate their significance in health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QSFS00000000.1 Bac0019166 Phocaeicola coprophilus strain AM42-38 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola coprophilus 387090 QSFT00000000.1 Bac0019167 Eubacterium ventriosum strain AM42-30 "Eubacterium ventriosum strain AM42-30 is a Gram-positive anaerobic bacterium primarily found in fecal matter. As a member of the Eubacterium genus, this strain exhibits the characteristic ability to thrive in environments devoid of oxygen, which is typical for many gut-associated bacteria. Its anaerobic nature suggests that it plays a role in the complex microbial community of the gut, potentially contributing to various metabolic processes essential for host health.↵↵The presence of Eubacterium ventriosum strain AM42-30 in fecal samples indicates its adaptation to the anaerobic conditions of the gastrointestinal tract. This habitat provides a nutrient-rich environment where such microorganisms can flourish, engaging in fermentation processes that may influence gut health and microbial diversity. The metabolic activities of Eubacterium species, including the breakdown of complex carbohydrates and the production of short-chain fatty acids, are crucial for maintaining gut homeostasis and overall health.↵↵Understanding the specific role of Eubacterium ventriosum strain AM42-30 within the gut microbiome may provide insights into its potential interactions with other microbial species and its contributions to gut health. Its presence in fecal matter underscores its likely involvement in the fermentation processes that are vital for digestion and nutrient absorption, highlighting the importance of anaerobic bacteria in sustaining the ecological balance of the gastrointestinal environment." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ventriosum Positive Anaerobe feces 39496 QSFV00000000.1 Bac0019168 Holdemanella biformis strain AM42-13AC Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemanella Holdemanella biformis feces 1735 QSGD00000000.1 Bac0019169 Bacteroides ovatus strain AM40-4 "Bacteroides ovatus strain AM40-4 is a Gram-negative anaerobic bacterium predominantly found in the gut microbiota. As an anaerobe, this strain thrives in oxygen-free environments, which is characteristic of the intestinal tract where it plays a role in the complex ecosystem of gut microbiota. ↵↵Bacteroides species, including B. ovatus, are known to be involved in the breakdown of complex carbohydrates, contributing to the fermentation processes that yield short-chain fatty acids beneficial for host health. This metabolic capability is essential for maintaining gut homeostasis and may influence nutrient absorption and immune function. ↵↵The presence of B. ovatus strain AM40-4 in the gut suggests its potential contribution to the microbiome's diversity and stability. Additionally, its efficient degradation of polysaccharides may have implications for dietary fiber metabolism, thus highlighting its role in the host's nutritional dynamics. The interactions of this strain with other gut microorganisms further underscore its significance in maintaining a balanced gut environment, which is crucial for overall health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 QSGM00000000.1 Bac0019170 Bacteroides stercoris strain AM40-34 "Bacteroides stercoris strain AM40-34 is a Gram-negative anaerobic bacterium, notable for its adaptation to environments devoid of oxygen. As a member of the Bacteroides genus, this strain is characterized by its ability to thrive in anaerobic conditions, which is typical for many members of this group commonly found in the gastrointestinal tract of various hosts. The Gram-negative nature of B. stercoris strain AM40-34 suggests a distinctive cell wall structure, featuring a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵These traits highlight the strain's potential role in anaerobic fermentation processes, which are crucial for the breakdown of complex carbohydrates and the production of short-chain fatty acids in the gut microbiome. Furthermore, the presence of Bacteroides species, such as B. stercoris strain AM40-34, can influence host metabolism and immune responses, contributing to gut health and overall homeostasis. ↵↵Understanding the specific functions and interactions of B. stercoris strain AM40-34 within the microbial community may provide insights into its contributions to nutrient cycling and its potential implications for digestive health in its host organisms." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 QSGN00000000.1 Bac0019171 Enterocloster aldenensis strain AM40-2AC "Enterocloster aldenensis strain AM40-2AC is a Gram-positive, nonsporulating bacterium classified within the intestinal microflora of animals. As a chemoheterotroph, this strain derives its energy from organic compounds, which is typical of many members of gut microbiota that contribute to the digestion and fermentation processes within the host. ↵↵The presence of Enterocloster aldenensis in the intestinal tract suggests its potential role in maintaining gut health and influencing the overall microbial community dynamics. Given its habitat, it may participate in complex interactions with other gut microorganisms, contributing to metabolic processes that are vital for host nutrition and immune function. ↵↵Furthermore, the nonsporulating nature of this strain indicates it may have adapted to persist in the stable, nutrient-rich environment of the intestinal microflora, where sporulation would be less advantageous compared to other environments that require resilience to extreme conditions. This characteristic highlights the specialized adaptations of gut bacteria like Enterocloster aldenensis to their ecological niches, underscoring the importance of understanding these microorganisms in the context of host-microbe interactions and gut health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster aldenensis Positive No 1 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 358742 QSGP00000000.1 Bac0019172 Hungatella hathewayi strain AM39-16AC "Hungatella hathewayi strain AM39-16AC is a Gram-positive, rod-shaped bacterium known for its anaerobic lifestyle and ability to sporulate. This strain thrives optimally at 37.0°C and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. Found primarily in the intestinal microflora of animals, H. hathewayi plays a role in the complex microbial ecosystem of the gut.↵↵The anaerobic nature of Hungatella hathewayi suggests that it participates in fermentation processes, which can contribute to the breakdown of complex carbohydrates and the production of short-chain fatty acids, vital for host health. The ability to sporulate may provide a survival advantage in the fluctuating conditions of the intestinal environment, allowing it to withstand adverse conditions that may occur during transit through the gastrointestinal tract.↵↵This strain's presence in animal intestinal microflora indicates its potential importance in gut health and microbial balance, contributing to digestive processes and possibly influencing host metabolism. Further investigation of H. hathewayi could elucidate its specific interactions within the gut microbiome and its role in maintaining intestinal homeostasis." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi Positive Rod No 1 Anaerobic 37 Chemoheterotroph Animal intestinal microflora Sporulating 154046 QSGX00000000.1 Bac0019173 Phocaeicola vulgatus strain AM38-19 "Phocaeicola vulgatus strain AM38-19 is a Gram-positive, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. This strain is host-associated, suggesting a close relationship with a particular host organism, which may play a role in its ecological niche. ↵↵The anaerobic nature of P. vulgatus strain AM38-19 implies that it is adapted to environments where oxygen levels are low, likely including the gastrointestinal tracts of various hosts. In such anaerobic habitats, this microbe may participate in critical biochemical processes, including fermentation pathways, which could contribute to the host's metabolic balance. ↵↵The presence of P. vulgatus strain AM38-19 in host-associated environments may indicate its potential role in symbiotic relationships, possibly aiding in nutrient absorption or contributing to the host's microbial diversity. Understanding the specific interactions between this strain and its host could provide insights into its functional significance within the microbial community, as well as its overall impact on host health. Further research could elucidate the ecological roles and benefits conferred by this bacterium in its natural habitat." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QSHD00000000.1 Bac0019174 Parabacteroides distasonis strain AM38-13AC "Parabacteroides distasonis strain AM38-13AC is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. This strain is part of the diverse microbial communities found in the gastrointestinal tracts of various hosts, where it is adapted to the unique biochemical conditions present in these habitats. The anaerobic nature of P. distasonis indicates its reliance on fermentation pathways for energy production, utilizing organic substrates prevalent in the gut environment.↵↵The association of P. distasonis with host organisms suggests potential roles in gut health, including contributions to nutrient absorption and modulation of the host's immune response. Its presence in the microbiota may provide insights into the complex interactions between gut microbes and their hosts, particularly in relation to metabolic processes and the maintenance of gut homeostasis. Further investigation into P. distasonis strain AM38-13AC may elucidate its specific functions and interactions within the host, potentially revealing its significance in maintaining a balanced microbiome. Understanding such dynamics could enhance our knowledge of gut microbiota's overall impact on health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 QSHF00000000.1 Bac0019175 Mediterraneibacter gnavus strain AM38-12 "Mediterraneibacter gnavus strain AM38-12 is a Gram-positive, nonsporulating coccus that thrives as a chemoheterotroph in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain is part of the animal intestinal microflora, where it likely engages in complex interactions with other gut microbiota and contributes to the overall metabolic processes within the host's digestive system.↵↵The coccoid shape of Mediterraneibacter gnavus strain AM38-12 may facilitate its survival and proliferation in the dense microbial community of the intestine, where spatial competition for resources is a critical factor. As a nonsporulating organism, this strain relies on stable environmental conditions for survival, which may influence its ecological niche within the intestinal habitat. The anaerobic requirement suggests a specialization in utilizing substrates that are fermented in oxygen-depleted environments, potentially impacting the metabolic output of the gut microbiome.↵↵Understanding the specific roles of Mediterraneibacter gnavus strain AM38-12 in the intestinal ecosystem could provide insights into its contribution to host health, particularly in the context of nutrient absorption and immune modulation. The presence of this strain in the gut microbiota underscores the importance of anaerobic bacteria in maintaining a balanced intestinal environment, highlighting their potential roles in influencing host metabolism and health outcomes." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 QSHH00000000.1 Bac0019176 Dorea formicigenerans strain AM37-5 "Dorea formicigenerans strain AM37-5 is a Gram-positive anaerobic bacterium primarily found in the gut environment. This strain is part of the diverse microbial community residing within the gastrointestinal tract, where it plays a role in the fermentation of complex carbohydrates. As an anaerobe, D. formicigenerans strain AM37-5 thrives in oxygen-depleted conditions, which are characteristic of the gut microbiome, allowing it to contribute to the metabolic processes that influence gut health and function.↵↵The anaerobic nature of D. formicigenerans strain AM37-5 suggests its adaptation to the gut environment, where oxygen levels are minimal. This adaptation may enable the strain to utilize various substrates for energy production, potentially contributing to short-chain fatty acid (SCFA) formation, which is crucial for maintaining gut homeostasis and overall health. Additionally, its presence in the gut microbiome may have implications for nutrient absorption and immune modulation.↵↵The ecological significance of Dorea formicigenerans strain AM37-5 lies in its potential role in complex microbial interactions, as well as its participation in the degradation of dietary fibers. This capability may support the symbiotic relationship between the host and its microbiota, highlighting the importance of anaerobic bacteria in the gastrointestinal ecosystem and their contribution to the metabolic health of the host." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QSHK00000000.1 Bac0019177 Blautia obeum strain AM37-4AC "Blautia obeum strain AM37-4AC is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, primarily residing in the intestinal microflora of animals. This strain is characterized by its anaerobic metabolic requirements, thriving in environments devoid of oxygen, which aligns with the typical conditions found within the gastrointestinal tract. ↵↵As a member of the gut microbiota, Blautia obeum strain AM37-4AC plays a significant role in the fermentation of dietary fibers and the production of short-chain fatty acids, which are crucial for host health. The ability of this strain to utilize various organic compounds for energy under anaerobic conditions reflects its potential contributions to the overall metabolic activity within the intestinal ecosystem. ↵↵Understanding the functional capacities of Blautia obeum strain AM37-4AC can provide insights into its interactions with other gut microbes and its influence on host physiology, particularly in the context of nutrient absorption and immune modulation. The presence of this strain in the intestinal microflora underscores the importance of anaerobic bacteria in maintaining gut health and suggests potential implications for dietary interventions aimed at promoting beneficial microbial communities." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QSHL00000000.1 Bac0019178 Lachnospira eligens strain AM37-3BH "Lachnospira eligens strain AM37-3BH is a Gram-negative, rod-shaped anaerobic bacterium that is host-associated. This strain's anaerobic nature indicates its reliance on environments devoid of oxygen, which is characteristic of many members within the Lachnospira genus. As a host-associated microbe, L. eligens strain AM37-3BH likely plays a role in the microbial communities found within the gastrointestinal tract of its host, contributing to the complex interplay of microorganisms that aid in digestion and nutrient absorption.↵↵The rod shape of this organism is consistent with its classification within the Firmicutes phylum, where such morphology is common. While the specific interactions of strain AM37-3BH with its host are not detailed, it is plausible that it participates in metabolic processes that may influence the host's health, potentially through fermentation of dietary fibers or production of short-chain fatty acids.↵↵Further investigations into the ecological role of Lachnospira eligens strain AM37-3BH could provide insights into its functional contributions to gut microbiome stability and its interactions with other microbial species. Understanding such dynamics may reveal the importance of this strain in maintaining host homeostasis and its potential influence on overall health." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospira Lachnospira eligens Negative Rod 1 Anaerobe Mesophilic HostAssociated Free living 39485 QSHM00000000.1 Bac0019179 Bacteroides stercoris strain AM36-9BH "Bacteroides stercoris strain AM36-9BH is a Gram-negative, strictly anaerobic bacterium. This strain is characterized by its ability to thrive in environments devoid of oxygen, which is typical for members of the Bacteroides genus, often found in the gastrointestinal tracts of humans and other animals. The Gram-negative nature of B. stercoris indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, a trait that contributes to its resilience in various environmental conditions.↵↵Anaerobic bacteria like B. stercoris play crucial roles in fermentation processes and the breakdown of complex carbohydrates, contributing to nutrient cycling within their ecosystems. While specific metabolic pathways for strain AM36-9BH have not been detailed here, it is generally understood that Bacteroides species are instrumental in the digestion of dietary fibers and the production of short-chain fatty acids, which are vital for host health.↵↵The ecological significance of Bacteroides stercoris strain AM36-9BH may extend beyond its role in digestion; its presence in the gut microbiome can influence host immune responses and overall gut homeostasis. The strict anaerobic lifestyle of this strain underscores the importance of oxygen-free environments for its survival and function, which highlights the intricate relationships between anaerobic microbes and their hosts in maintaining gut health and microbial diversity." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 QSHQ00000000.1 Bac0019180 Faecalibacterium prausnitzii strain AM36-18BH "Faecalibacterium prausnitzii strain AM36-18BH is a Gram-positive, nonsporulating rod that thrives in anaerobic conditions and optimally grows at 37°C. As a chemoheterotroph, this microbe derives its energy from organic compounds, allowing it to adapt to various habitats. ↵↵This strain, like others within the species, is notable for its role in the gut microbiome, where it contributes to maintaining intestinal health. It is frequently found in the gastrointestinal tracts of humans and other mammals, indicating its potential significance in digestive processes and the modulation of host immune responses. ↵↵Given the diverse environments in which Faecalibacterium prausnitzii has been identified, it may play a role in the ecological balance of microbial communities, particularly in anaerobic niches. The presence of this strain highlights the intricate relationships between gut microbiota and host health, suggesting that its metabolic activities could influence the overall functionality of the gut ecosystem. Further research may elucidate the specific interactions and contributions of strain AM36-18BH to gut health and disease prevention." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 QSHX00000000.1 Bac0019181 Anaerobutyricum hallii strain AM34-3LB "Anaerobutyricum hallii strain AM34-3LB is a Gram-positive, nonsporulating bacterium that thrives under anaerobic conditions and is classified as a chemoheterotroph, utilizing organic compounds as its energy source. This strain exhibits optimal growth at a temperature of 37.0°C, suggesting it may be well-adapted to warm environments. The species is known to inhabit multiple habitats, indicating its ecological versatility and potential role in various anaerobic ecosystems.↵↵As a member of the gut microbiota, Anaerobutyricum hallii plays a significant role in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids, which are essential for maintaining gut health and influencing host metabolism. Its ability to thrive in diverse anaerobic conditions highlights its importance in nutrient cycling and energy production within its ecological niches. This adaptability may offer insights into its potential contributions to microbial communities and their functions in environments ranging from the human gut to other anaerobic habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerobutyricum Anaerobutyricum hallii Positive No 1 Anaerobic 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 39488 QSID00000000.1 Bac0019182 Bacteroides uniformis strain AM34-25 "Bacteroides uniformis strain AM34-25 is a Gram-negative anaerobic bacterium primarily inhabiting the gastrointestinal tract, particularly within the gut luminal niche of hosts. This strain is a member of the Bacteroides genus, which is known for its role in the digestion of complex carbohydrates and the maintenance of gut health. ↵↵As an anaerobe, B. uniformis strain AM34-25 thrives in environments devoid of oxygen, which is characteristic of the intestinal tract where oxygen levels are low. The presence of this strain in the gut suggests it may contribute to the fermentation of dietary fibers, potentially influencing the production of short-chain fatty acids (SCFAs) that play a crucial role in gut health and metabolic processes.↵↵Understanding the specific functions and interactions of Bacteroides uniformis strain AM34-25 within the gut microbiome may shed light on its contributions to host nutrition and immune modulation. Its ability to coexist in a complex microbial community highlights the importance of anaerobic bacteria in maintaining the balance of the intestinal microbiota and their potential impact on overall health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QSIF00000000.1 Bac0019183 Prevotella sp. AM34-19LB Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. AM34-19LB 2292364 QSIG00000000.1 Bac0019184 Parabacteroides merdae strain AM34-17 "Parabacteroides merdae strain AM34-17 is a Gram-negative, anaerobic bacterium that belongs to the family of Bacteroidaceae. This strain is characterized by its inability to grow in the presence of oxygen, indicating its adaptation to an anaerobic environment. Parabacteroides species are typically found in the intestinal tract of humans and other animals, suggesting that strain AM34-17 may play a role in gut microbiota composition and function.↵↵As a member of the Bacteroidaceae family, P. merdae strain AM34-17 is likely involved in the fermentation of complex carbohydrates, contributing to the breakdown of dietary fibers and the production of short-chain fatty acids, which are essential for gut health. The anaerobic nature of this strain implies that it thrives in environments devoid of oxygen, which aligns with its potential function in the gastrointestinal ecosystem.↵↵Further research into Parabacteroides merdae strain AM34-17 may provide insights into its metabolic capabilities and interactions within the intestinal microbiome. Understanding the role of this strain could illuminate its significance in maintaining gut homeostasis and its potential influence on host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 46503 QSII00000000.1 Bac0019185 Streptococcus parasanguinis strain AM33-3BH "Streptococcus parasanguinis strain AM33-3BH is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Most notably, S. parasanguinis is classified as host-associated, suggesting its ecological niche is closely tied to a host organism, where it may play a role in the microbial community.↵↵The ability of S. parasanguinis strain AM33-3BH to grow in varying oxygen conditions hints at its adaptability and potential interactions within the host environment. The chain and pair arrangement of the cells may facilitate communication and cooperation between individual bacteria, which could enhance their survival and functionality in the complex biological milieu of the host. Further research into this strain may reveal its specific roles in host-associated biofilms or its contributions to oral microbiota, given the genus's known prevalence in human oral cavities. Overall, the traits of S. parasanguinis strain AM33-3BH underscore its significance in understanding host-microbe interactions and the dynamics of microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1318 QSIO00000000.1 Bac0019186 Parabacteroides distasonis strain AM33-1 "Parabacteroides distasonis strain AM33-1 is a Gram-positive, nonsporulating rod-shaped bacterium that is classified as an anaerobe, thriving in host-associated environments. This microbe is part of a group that often resides in the gastrointestinal tracts of mammals, where it plays a role in the complex interactions of the gut microbiome. ↵↵As a nonsporulating organism, P. distasonis strain AM33-1 relies on anaerobic conditions for its growth and metabolic activities, which are essential for its survival and functionality within the host ecosystem. The anaerobic lifestyle suggests that it may contribute to the fermentation processes occurring in the gut, potentially aiding in the breakdown of dietary fibers and the production of short-chain fatty acids, which are beneficial to gut health.↵↵Given its habitat and metabolic characteristics, P. distasonis strain AM33-1 may play a significant role in maintaining gut homeostasis and influencing host immune responses. Understanding the specific functions and interactions of this strain within the gut microbiome can provide insights into its contribution to host health, particularly in the context of a balanced microbial community. Further research into the ecological roles of P. distasonis strain AM33-1 may elucidate its potential benefits or implications for host physiology." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 QSIP00000000.1 Bac0019187 Roseburia inulinivorans strain AM32-8LB "Roseburia inulinivorans strain AM32-8LB is a Gram-positive, nonsporulating anaerobic bacterium that exhibits chemoheterotrophic metabolism, thriving optimally at 37.0°C. This strain is part of a broader group of microbes known for their role in the fermentation of dietary fibers, particularly inulin, which is a fructan commonly found in various plants. ↵↵The anaerobic nature of R. inulinivorans suggests that it is well-adapted to environments with limited oxygen, such as the human gastrointestinal tract and other anoxic habitats. The ability to utilize a range of organic compounds for energy allows this strain to occupy multiple ecological niches, contributing to the complex dynamics of microbial communities in these environments.↵↵Given its metabolic capabilities, R. inulinivorans plays a significant role in the fermentation processes that contribute to gut health by producing short-chain fatty acids (SCFAs), which are known to have beneficial effects on host metabolism and immune function. The presence of this strain in the gut ecosystem may be indicative of a diet rich in prebiotics, highlighting the intricate relationship between dietary components and gut microbiota composition. This underscores the potential importance of R. inulinivorans in promoting health through its involvement in fiber digestion and SCFA production." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia inulinivorans Positive No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 360807 QSIQ00000000.1 Bac0019188 Mediterraneibacter gnavus strain AM32-6 "Mediterraneibacter gnavus strain AM32-6 is a Gram-positive, nonsporulating coccus that thrives as a chemoheterotroph in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain is part of the intestinal microflora of animals, suggesting a role in the complex microbial ecosystems that contribute to digestive processes and gut health.↵↵As a member of the gut microbiota, Mediterraneibacter gnavus strain AM32-6 likely participates in the fermentation of dietary substrates, thus supporting energy extraction for both the host and the microbial community. Its anaerobic nature indicates that it may be involved in the breakdown of organic matter in the absence of oxygen, a critical process for maintaining the overall balance of gut microbiota and influencing nutrient availability.↵↵The presence of this strain in animal intestines underscores the importance of such microbes in digestion and metabolism, potentially contributing to the modulation of host immune responses and maintenance of gut homeostasis. Further investigation into Mediterraneibacter gnavus strain AM32-6 may reveal insights into its specific metabolic pathways and interactions with other gut inhabitants, enhancing our understanding of its ecological role within the intestinal microbiome." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus Positive Cocci No 1 Anaerobic 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 33038 QSIR00000000.1 Bac0019189 Parabacteroides distasonis strain AM32-23 "Parabacteroides distasonis strain AM32-23 is a Gram-positive, nonsporulating, rod-shaped bacterium that thrives in anaerobic environments, specifically within host-associated habitats. This strain is part of the diverse microbiota found in the gastrointestinal tract of various hosts, where it contributes to the microbial community's metabolic functions and overall health.↵↵As an anaerobe, P. distasonis strain AM32-23 is adapted to environments devoid of oxygen, which influences its metabolic pathways and interactions with other microbial species. The ability to inhabit host-associated environments suggests a potential role in the digestion of complex carbohydrates and the production of short-chain fatty acids, which are important for host health and immune function.↵↵Understanding the traits of P. distasonis strain AM32-23 can provide insights into its ecological role within the gut microbiome. As a member of the microbiota, it may play a crucial part in maintaining gut homeostasis and could influence host metabolism and immune responses. Further investigation into its specific interactions and contributions within the host-associated ecosystem may reveal important biological functions and potential applications in health and disease management." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 QSIV00000000.1 Bac0019190 Bacteroides ovatus strain AM32-14LB "Bacteroides ovatus strain AM32-14LB is a Gram-negative, anaerobic bacterium predominantly found in the gut microbiota of humans and other mammals. This strain is part of the Bacteroides genus, which is known for its role in the breakdown of complex carbohydrates and contribution to the fermentation processes in the gastrointestinal tract. As an anaerobe, Bacteroides ovatus strain AM32-14LB thrives in environments devoid of oxygen, where it participates in the maintenance of gut homeostasis and the regulation of metabolic processes.↵↵The presence of Bacteroides ovatus strain AM32-14LB in the gut suggests its potential importance in the digestion of dietary fibers and other macromolecules that are not readily metabolized by host enzymes. By fermenting these substrates, Bacteroides species can produce short-chain fatty acids (SCFAs) which serve as vital energy sources for colonocytes and play a role in maintaining gut health. Furthermore, the metabolic activities of this strain may contribute to the overall diversity and stability of the gut microbiome, potentially influencing host immune responses and metabolic functions.↵↵Understanding the specific contributions of Bacteroides ovatus strain AM32-14LB within the gut ecosystem may provide insights into the complex interactions between gut microbiota and host physiology, particularly in relation to dietary influences and health outcomes." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 QSIX00000000.1 Bac0019191 Ruminococcus bromii strain AM32-13AC "Ruminococcus bromii strain AM32-13AC is a Gram-positive, coccoid-shaped anaerobic bacterium predominantly found in feces and associated with the rectal mucosa of its host. As a member of the human gut microbiota, this strain plays a significant role in the fermentation of dietary fibers, contributing to the complex metabolic processes within the gastrointestinal tract. Its anaerobic nature indicates that it thrives in low-oxygen environments, which is characteristic of the gut ecosystem, where it aids in the breakdown of polysaccharides and the production of short-chain fatty acids.↵↵The presence of Ruminococcus bromii in the gut microbiome has been linked to the efficient degradation of resistant starches, positioning it as a key player in human digestive health. Given its habitat and metabolic capabilities, this strain may help maintain gut homeostasis by influencing microbial diversity and promoting beneficial interactions among gut microbial communities. Furthermore, the unique ecological niche occupied by Ruminococcus bromii suggests that it may have evolved specialized mechanisms to adapt to the anaerobic conditions of the gut, highlighting its importance in the intricate balance of microbial life within the human intestine." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bromii Positive Cocci Anaerobe feces; rectal mucosa 40518 QSIY00000000.1 Bac0019192 Bacteroides uniformis strain AM31-23 "Bacteroides uniformis strain AM31-23 is a Gram-negative, anaerobic bacterium predominantly found in the gastrointestinal tract, specifically within the gut luminal niche of various hosts. This strain is part of a diverse microbiota, contributing to the complex microbial ecosystem in the intestinal tract. As an anaerobe, B. uniformis strain AM31-23 thrives in environments devoid of oxygen, which is characteristic of the gut environment where it plays a role in the fermentation of dietary fibers and other substrates.↵↵The metabolic activities of Bacteroides uniformis strain AM31-23 may facilitate the breakdown of complex carbohydrates, leading to the production of short-chain fatty acids (SCFAs) that are beneficial for host health. SCFAs, such as butyrate, serve as an energy source for colonocytes and play a role in maintaining gut homeostasis. The presence of B. uniformis in the gut microbiome underscores its potential importance in digestive health and the overall metabolic processes that occur within this specialized habitat. Furthermore, the ability of this strain to thrive in a highly anaerobic environment highlights the adaptation mechanisms of gut microbiota to specific ecological niches, reflecting the intricate relationships between host and microbial communities." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QSJC00000000.1 Bac0019193 Bacteroides xylanisolvens strain AM30-47 "Bacteroides xylanisolvens strain AM30-47 is a Gram-negative, anaerobic bacterium characterized by its capacity to metabolize xylan, a hemicellulose component found in plant cell walls. This strain is part of the diverse Bacteroides genus, which plays a significant role in the gut microbiota of various organisms, contributing to the degradation of complex carbohydrates and the overall health of the host. ↵↵The anaerobic nature of Bacteroides xylanisolvens strain AM30-47 allows it to thrive in oxygen-depleted environments, such as the intestinal tract, where it may participate in the fermentation of polysaccharides and production of short-chain fatty acids. These metabolic processes are crucial for maintaining gut homeostasis and influencing host metabolism. ↵↵Understanding the specific metabolic pathways and ecological interactions of Bacteroides xylanisolvens strain AM30-47 can provide insights into its potential applications in biotechnological processes, particularly in the development of prebiotics or probiotics aimed at enhancing gut health. Further investigation into the strain's enzymatic capabilities could elucidate its role in the degradation of plant material, thereby highlighting its relevance in both natural and engineered ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides xylanisolvens Negative Anaerobe 371601 QSJK00000000.1 Bac0019194 Bacteroides thetaiotaomicron strain AM30-26 "Bacteroides thetaiotaomicron strain AM30-26 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments, typically associated with host organisms. This strain is part of the Bacteroides genus, which is known for its role in the human gut microbiome, where it contributes to the digestion of complex carbohydrates and plays a crucial role in maintaining gut health.↵↵As an anaerobe, B. thetaiotaomicron strain AM30-26 is adapted to environments devoid of oxygen, which is characteristic of the intestinal tract where it resides. Its presence in host-associated habitats highlights its potential symbiotic relationship with the host, facilitating nutrient absorption and influencing host metabolism.↵↵Understanding the specific traits of Bacteroides thetaiotaomicron strain AM30-26 can provide insights into its functional contributions within the gut microbiome. The ability of this strain to thrive in anaerobic conditions may enhance its capacity to ferment dietary fibers, yielding short-chain fatty acids that are beneficial for colonic health. Furthermore, the interaction of this strain with the host immune system could shed light on the dynamic balance between microbial communities and host responses, emphasizing the importance of B. thetaiotaomicron in gut homeostasis and overall health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron Negative Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living 818 QSJP00000000.1 Bac0019195 Blautia obeum strain AM29-25AC "Blautia obeum strain AM29-25AC is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, utilizing organic compounds as its energy source. This strain is predominantly found in the intestinal microflora of animals, where it likely plays a role in the complex ecosystem of the gut microbiome. As an anaerobic organism, B. obeum strain AM29-25AC thrives in low-oxygen environments, which are characteristic of the intestinal tract.↵↵The presence of B. obeum in the gut suggests it may contribute to the fermentation of dietary fibers and other complex carbohydrates, aiding in the digestive processes of host animals. Given its classification within the diverse group of gut microbes, this strain may also engage in interspecies interactions that influence the overall composition and functionality of the microbial community. Understanding the specific metabolic pathways and interactions of B. obeum strain AM29-25AC could provide insights into its potential benefits in maintaining gut health and contributing to the balance of the intestinal microbiome. Further studies could elucidate the strain's role in nutrient absorption and its impact on host physiology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QSJW00000000.1 Bac0019196 Bacteroides uniformis strain AM29-12AC "Bacteroides uniformis strain AM29-12AC is a Gram-negative anaerobic bacterium predominantly found in the gastrointestinal tract, specifically within the gut luminal niche of various host organisms. As a member of the Bacteroides genus, this strain plays a significant role in the complex microbial community of the gut, where it contributes to the digestion of complex carbohydrates and the fermentation processes essential for host metabolism.↵↵The anaerobic nature of Bacteroides uniformis strain AM29-12AC indicates that it thrives in environments devoid of oxygen, which is characteristic of the gut environment where it resides. This adaptation allows the bacterium to engage in various metabolic pathways that are crucial for maintaining gut health and homeostasis. The presence of such anaerobic microbes is vital for the breakdown of dietary fibers, which in turn supports the production of short-chain fatty acids (SCFAs), important energy sources for colonocytes and modulators of immune response.↵↵The specific ecological role of Bacteroides uniformis strain AM29-12AC within the gut microbiota underscores its potential contribution to the overall metabolic function and microbial diversity of the intestinal ecosystem. Understanding the interactions and functions of such strains can provide insights into the complexities of gut microbiome dynamics and host health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QSJZ00000000.1 Bac0019197 Agathobacter rectalis strain AM29-10 "Agathobacter rectalis strain AM29-10 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph in anaerobic conditions, with an optimal growth temperature of 37.0°C. This strain is part of a diverse group of microorganisms that inhabit multiple environments, suggesting its potential adaptability to various ecological niches.↵↵As a member of the Agathobacter genus, A. rectalis strain AM29-10 contributes to the complex microbial communities found in anaerobic habitats, such as the gastrointestinal tracts of animals, where it may play a role in the fermentation processes and degradation of organic matter. The ability to utilize a variety of organic compounds for energy underscores its ecological versatility and importance in nutrient cycling within these environments.↵↵The nonsporulating nature of this strain implies that it may depend on continuous exposure to suitable environmental conditions for survival, contrasting with sporulating bacteria that can withstand harsher conditions through spore formation. This characteristic may influence its interactions within microbial consortia, particularly in stable anaerobic environments where competition for resources is prevalent. Overall, A. rectalis strain AM29-10 represents an intriguing component of the anaerobic microbiome, with potential implications for understanding microbial dynamics in diverse habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSKC00000000.1 Bac0019198 Eubacterium sp. AM28-29 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AM28-29 2292349 QSKE00000000.1 Bac0019199 Streptococcus parasanguinis strain AM27-45 "Streptococcus parasanguinis strain AM27-45 is a Gram-positive, nonsporulating coccus that typically forms chains and pairs. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is particularly relevant in host-associated habitats where oxygen levels can fluctuate. ↵↵As a member of the Streptococcus genus, S. parasanguinis is commonly found in various host-associated environments, including the oral cavity, where it plays a role in the complex microbiome. The nonsporulating nature of this strain suggests that it has adapted to its ecological niche without relying on sporulation as a survival mechanism under stress conditions. ↵↵The ability of S. parasanguinis to grow in the presence or absence of oxygen may facilitate its survival in diverse microenvironments within a host, potentially influencing its interactions with other microbial species and the host's immune system. Understanding the traits of S. parasanguinis strain AM27-45 may provide insights into its role in oral health and disease, as well as its contributions to the overall balance of the microbiome in the host." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus parasanguinis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 1318 QSKM00000000.1 Bac0019200 Streptococcus gordonii strain AM27-4 "Streptococcus gordonii strain AM27-4 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the physiological conditions often found in host-associated environments. As a facultative anaerobe, S. gordonii strain AM27-4 can grow in both aerobic and anaerobic conditions, allowing it to adapt to various microenvironments within the host. ↵↵The ability of this strain to exist in chains or pairs may facilitate its colonization and persistence in host tissues, potentially contributing to its role in the oral microbiome. Streptococcus gordonii is known to be part of the normal flora in the human mouth, where it participates in the complex interactions of the oral microbiota. Its facultative anaerobic nature suggests a metabolic versatility that enables it to thrive in the dynamic conditions of the oral cavity, where oxygen levels can vary significantly. ↵↵Furthermore, the presence of S. gordonii strain AM27-4 in host-associated habitats may provide insights into its potential interactions with other microbial species, influencing dental plaque formation and the overall health of the oral ecosystem. Understanding the traits of this strain may illuminate its functional roles within its ecological niche and its impact on host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1302 QSKN00000000.1 Bac0019201 Blautia obeum strain AM27-32LB "Blautia obeum strain AM27-32LB is a Gram-positive, nonsporulating coccus that functions as a chemoheterotroph, thriving in anaerobic environments. This strain is part of the diverse intestinal microflora found in various animal hosts, contributing to the complex microbial ecosystem within the gastrointestinal tract. The ability to utilize organic compounds as energy sources allows B. obeum AM27-32LB to play a significant role in the fermentation processes that occur in the intestines. ↵↵Being a member of the anaerobic microbiota, this strain likely influences the metabolic pathways responsible for nutrient absorption and fermentation, which are essential for the host's health and nutrition. Its presence in the gut can potentially impact various physiological processes, including digestion and immune response, although specific roles and interactions within the intestinal ecosystem remain to be fully elucidated. The characteristics of B. obeum strain AM27-32LB suggest that it could be a vital component of gut health, contributing to the maintenance of microbial balance and the prevention of dysbiosis. Further research may provide insights into its functional contributions to host metabolism and its potential applications in probiotic development or therapeutic strategies aimed at restoring gut microbiota." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QSKO00000000.1 Bac0019202 Bacteroides stercoris strain AM27-18 "Bacteroides stercoris strain AM27-18 is a Gram-negative, strictly anaerobic bacterium. This strain, a member of the Bacteroides genus, exhibits the characteristic traits of its lineage, including a robust cell wall structure typical of Gram-negative bacteria, which is composed of a thin peptidoglycan layer sandwiched between the inner and outer membranes. The anaerobic nature of B. stercoris strain AM27-18 indicates that it thrives in environments devoid of oxygen, which is consistent with its adaptation to the anaerobic conditions often found in the gastrointestinal tracts of various organisms.↵↵Bacteroides species are known to play a significant role in the digestion of complex polysaccharides, contributing to the breakdown of dietary fiber and the overall fermentation process within the gut. The presence of B. stercoris strain AM27-18 in specific environments suggests its potential involvement in the microbiota of hosts, where it may assist in nutrient degradation and absorption. Furthermore, its strict anaerobic requirement implies that it may be sensitive to oxygen exposure, which could influence its ecological niche and interactions with other microbial communities.↵↵Understanding the traits of Bacteroides stercoris strain AM27-18 enhances our knowledge of anaerobic microbial diversity and the functional roles these organisms play in maintaining gut health and homeostasis. As such, this strain may serve as a model for studying microbial metabolism and interspecies interactions in anaerobic ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 QSKU00000000.1 Bac0019203 Bacteroides intestinalis strain AM27-17 "Bacteroides intestinalis strain AM27-17 is a Gram-negative anaerobic bacterium. As a member of the genus Bacteroides, this strain is characterized by its inability to thrive in the presence of oxygen, which is a common trait among anaerobic bacteria. Bacteroides species are typically found in the gastrointestinal tract of humans and other animals, playing a crucial role in the digestion of complex carbohydrates and contributing to the overall health of the host's microbiome.↵↵The Gram-negative nature of Bacteroides intestinalis strain AM27-17 suggests a distinctive cell wall structure, composed of a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides. This structural composition may influence its interactions with the host and the surrounding microbial community.↵↵While specific metabolic capabilities and interactions of strain AM27-17 are not detailed here, Bacteroides species are generally known for their ability to ferment a wide range of polysaccharides, producing short-chain fatty acids that can serve as energy sources for host cells and modulate immune responses. ↵↵The ecological role of Bacteroides intestinalis strain AM27-17 within the gut microbiota may extend beyond digestion, possibly influencing gut health and disease through its metabolic products and interactions with other microbial populations. This underscores the importance of anaerobic bacteria like Bacteroides in maintaining the balance of the intestinal ecosystem and enhancing the host’s nutritional status." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis Negative Anaerobe 329854 QSKV00000000.1 Bac0019204 Agathobacter rectalis strain AM26-2LB "Agathobacter rectalis strain AM26-2LB is a Gram-positive, nonsporulating rod-shaped bacterium that functions as a chemoheterotroph, utilizing organic compounds as energy sources. This strain thrives optimally at a temperature of 37.0°C, indicating its potential adaptation to warm environments, possibly reflecting its habitat within the mammalian gut or similar anaerobic settings. ↵↵As an anaerobe, A. rectalis strain AM26-2LB is likely to play a role in the complex interactions of microbial communities, particularly in oxygen-limited environments where it may contribute to the breakdown of organic matter and the fermentation of dietary fibers. Its ability to inhabit multiple environments suggests a versatile ecological role, potentially aiding in nutrient cycling and influencing the overall microbiota composition. ↵↵The characteristics of A. rectalis strain AM26-2LB support its potential involvement in digestive processes and underscore its significance in maintaining gut health, as well as its possible contribution to the metabolic activities of the gut microbiome. Understanding the functional capabilities of this strain may provide insights into its role in anaerobic ecosystems, particularly in relation to host-microbe interactions and overall microbial diversity." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSKY00000000.1 Bac0019205 Bacteroides uniformis strain TM10-17 "Bacteroides uniformis strain TM10-17 is a Gram-negative, anaerobic bacterium predominantly residing in the gastrointestinal tract, particularly within the gut luminal niche of various hosts. This strain is part of the Bacteroides genus, which is known for its role in the digestion of complex carbohydrates and the maintenance of gut homeostasis.↵↵As an anaerobe, Bacteroides uniformis TM10-17 thrives in low-oxygen environments, which is characteristic of the intestinal tract. The microbe's metabolic processes are likely adapted to ferment various polysaccharides and other nutrients available in the gut, contributing to the overall microbial community's functionality and stability. While specific interactions with host physiology or other microbial species are not detailed, members of the Bacteroides genus are generally recognized for their potential to influence immune responses and metabolic functions.↵↵The presence of Bacteroides uniformis TM10-17 within the gut microbiota underscores its potential importance in digestive health, nutrient absorption, and possibly the modulation of gut-related diseases. Furthermore, the strain's adaptation to an anaerobic environment highlights the intricate balance of microbial communities in the gastrointestinal tract, where oxygen levels significantly influence species distribution and metabolic activity. Understanding such traits can provide insights into microbial contributions to host health and the dynamics of gut microbiome interactions." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QSOF00000000.1 Bac0019206 Dorea formicigenerans strain TM09-19AC "Dorea formicigenerans strain TM09-19AC is a Gram-positive, anaerobic bacterium that inhabits the gut. This strain is part of the diverse microbiota that contributes to the complex ecosystem of the gastrointestinal tract, where it likely plays a role in the fermentation of dietary fibers and other substrates. ↵↵As an anaerobe, Dorea formicigenerans strain TM09-19AC thrives in oxygen-free environments, which are characteristic of the gut milieu. The ability to metabolize compounds in the absence of oxygen suggests that this strain may participate in important biochemical processes such as short-chain fatty acid production, which can have implications for host health and metabolic functions.↵↵Furthermore, Dorea species, including strain TM09-19AC, are often associated with polysaccharide degradation, contributing to the breakdown of complex carbohydrates into simpler molecules that can be utilized by the host or other microbial inhabitants. This metabolic versatility underscores the ecological significance of Dorea formicigenerans in maintaining gut homeostasis and supporting overall gut health through its contributions to fermentation processes.↵↵Overall, Dorea formicigenerans strain TM09-19AC exemplifies the intricate interplay between gut microbiota and host metabolism, highlighting the importance of anaerobic bacteria in the digestive ecosystem. Further studies on this strain may reveal additional insights into its functional roles within the gut environment and its potential contributions to health and disease." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea formicigenerans Positive Anaerobe gut 39486 QSOI00000000.1 Bac0019207 Ruminococcus bromii strain TM09-18AC "Ruminococcus bromii strain TM09-18AC is a Gram-positive, coccoid anaerobic bacterium primarily found in fecal matter and the rectal mucosa of its host. This strain is part of the complex microbial community within the gastrointestinal tract, where it plays a significant role in the fermentation of dietary fibers. Ruminococcus bromii is notable for its ability to degrade complex carbohydrates, which contributes to the host’s overall digestive efficiency and nutrient absorption.↵↵The anaerobic nature of Ruminococcus bromii strain TM09-18AC indicates its adaptation to low-oxygen environments, such as the gut, where it thrives in association with other microbial species. This trait is critical for its survival and function in the intricate ecosystem of the microbiome, where anaerobes like Ruminococcus bromii help maintain a balanced microbial community by competing for resources and contributing to the metabolic processes that produce short-chain fatty acids essential for host health.↵↵Furthermore, its presence in fecal samples suggests that Ruminococcus bromii may be involved in the breakdown of polysaccharides derived from plant material, highlighting its potential significance in fiber digestion and energy extraction. The study of Ruminococcus bromii strain TM09-18AC may provide insights into the role of specific gut bacteria in host metabolism and health, particularly in relation to dietary influences on gut microbiota composition and function." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus bromii Positive Cocci Anaerobe feces; rectal mucosa 40518 QSOJ00000000.1 Bac0019208 Bacteroides sp. D20 strain TM09-11 "Bacteroides sp. D20 strain TM09-11 is a Gram-negative bacterium characterized by its robust metabolic capabilities. As a member of the Bacteroides genus, this strain is known to thrive in anaerobic conditions, contributing to its ecological niche within complex microbial communities, particularly in the gastrointestinal tract of mammals. The Gram-negative cell wall structure of Bacteroides sp. D20 strain TM09-11 is typified by a thin peptidoglycan layer surrounded by an outer membrane, which plays a critical role in its interactions with the environment and host organisms.↵↵While specific metabolic pathways and ecological functions of Bacteroides sp. D20 strain TM09-11 are not detailed, members of the Bacteroides genus are typically involved in the degradation of complex carbohydrates, thus aiding in the digestion of dietary fibers and influencing host metabolism. This functional capacity suggests that Bacteroides sp. D20 strain TM09-11 could play a significant role in nutrient cycling and the maintenance of gut homeostasis.↵↵Given its Gram-negative status, this strain may also possess mechanisms for antibiotic resistance and biofilm formation, traits commonly observed in related species. Understanding the metabolic and ecological contributions of Bacteroides sp. D20 strain TM09-11 is essential for unraveling its role in microbial ecosystems and its potential implications for host health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. D20 negative 585543 QSOO00000000.1 Bac0019209 Bacteroides sp. 4_1_36 strain TM07-1 "Bacteroides sp. 4_1_36 strain TM07-1 is a Gram-negative, anaerobic bacterium belonging to the genus Bacteroides. Characterized by its inability to thrive in the presence of oxygen, this strain is adapted to anaerobic environments, which are often found in the human gut and other similar habitats. The Gram-negative nature of Bacteroides sp. 4_1_36 strain TM07-1 suggests a complex outer membrane structure, which may contribute to its survival and functionality in anaerobic ecosystems.↵↵Like other members of the Bacteroides genus, strain TM07-1 likely plays a significant role in the breakdown of complex carbohydrates and polysaccharides, facilitating the fermentation process in the gut microbiome. By doing so, it may contribute to the production of short-chain fatty acids, which are beneficial for host metabolism and health. The ability to thrive in low-oxygen conditions underscores the ecological niche that this strain occupies, highlighting its potential importance in maintaining gut homeostasis and influencing overall microbial community dynamics.↵↵Moreover, the presence of Bacteroides sp. 4_1_36 strain TM07-1 in anaerobic environments may also indicate its role in nutrient cycling and its interactions with other microbial species, ultimately shaping the metabolic landscape of the ecosystem it inhabits." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. 4_1_36 Negative Anaerobe 457393 QSOX00000000.1 Bac0019210 Prevotella sp. TF12-30 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. TF12-30 2292365 QSQJ00000000.1 Bac0019211 Agathobacter rectalis strain TF11-15AC "Agathobacter rectalis strain TF11-15AC is a Gram-positive, nonsporulating rod-shaped bacterium that thrives optimally at a temperature of 37.0°C. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which it metabolizes in anaerobic conditions. The ability to grow in multiple habitats suggests that A. rectalis strain TF11-15AC is versatile and may contribute to various biochemical processes in its environments, including those associated with the gastrointestinal tract of different organisms.↵↵As an anaerobic organism, A. rectalis strain TF11-15AC plays a significant role in the fermentation of organic materials, potentially influencing the composition of microbial communities and nutrient cycling in its ecological niches. Its ecological versatility highlights its importance in anaerobic environments, where it may participate in symbiotic relationships with other microorganisms, contributing to the overall health and stability of microbial ecosystems. Understanding the metabolic capabilities and ecological roles of A. rectalis strain TF11-15AC could provide insights into the dynamics of complex microbial communities, particularly in the context of gut microbiota and their effects on host physiology." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSQP00000000.1 Bac0019212 Ligilactobacillus ruminis strain TF10-9AT "Ligilactobacillus ruminis strain TF10-9AT is a Gram-positive, rod-shaped bacterium that resides in the human gut and exhibits facultative anaerobic characteristics. This strain is part of the Lactobacillus genus, which is well-known for its role in fermentation and its presence in various human microbiomes. As a facultative anaerobe, L. ruminis TF10-9AT can thrive in both oxygen-rich and oxygen-poor environments, allowing it to adapt to the dynamic conditions of the gut microbiota.↵↵The presence of Ligilactobacillus ruminis strain TF10-9AT in the human gut suggests potential contributions to gut health, as members of this genus are often associated with beneficial effects on digestion and the maintenance of a balanced microbiome. This strain may play a role in the fermentation of dietary components, producing metabolites that can influence host physiology.↵↵Additionally, the ecological niche occupied by L. ruminis TF10-9AT highlights its potential interactions with other microbial species within the gut. By adapting to varying oxygen levels, this strain may contribute to metabolic processes that support the overall microbial community, thereby influencing gut homeostasis and possibly affecting host health outcomes. Further research could elucidate the specific functional roles of this strain within the complex ecosystem of the human gut microbiome." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus ruminis Positive Rod Facultative anaerobe human gut 1623 QSQR00000000.1 Bac0019213 Parabacteroides distasonis strain TF10-4 "Parabacteroides distasonis strain TF10-4 is a Gram-positive, rod-shaped bacterium that is classified as a nonsporulating anaerobe, thriving in host-associated environments. This strain is part of the diverse microbiota found in the gastrointestinal tract of various hosts, where it contributes to the complex interplay of microbial communities. ↵↵As an anaerobic organism, P. distasonis strain TF10-4 relies on fermentation processes for energy production, which is characteristic of many gut-associated bacteria. Its presence in the gut microbiome suggests a role in the degradation of dietary components, potentially aiding in the digestion of complex carbohydrates and contributing to the overall metabolic activities of the host's microbiota.↵↵Given its nonsporulating nature, P. distasonis strain TF10-4 may be sensitive to environmental stresses such as oxygen exposure, which could influence its survival outside of its preferred habitat. This trait underscores the importance of anaerobic conditions for its growth and function within the gut ecosystem. The ability of P. distasonis to thrive in such a specialized niche highlights its potential significance in maintaining gut health and supporting metabolic processes, as well as its interactions with both the host and other microbial species in the intestinal environment." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 QSQS00000000.1 Bac0019214 Phocaeicola plebeius strain TF10-3AC "Phocaeicola plebeius strain TF10-3AC is a Gram-negative, nonsporulating rod that functions as a chemoheterotroph and is adapted to anaerobic environments. This strain is part of the animal intestinal microflora, suggesting its role in the gut ecosystem where it may contribute to the complex interactions among microbial communities.↵↵As an anaerobe, P. plebeius strain TF10-3AC thrives in environments devoid of oxygen, which is typical for many gut bacteria that have evolved to metabolize compounds derived from host digestion and fermentation processes. The absence of sporulation indicates that this strain does not produce spores as a means of survival, which may imply a reliance on stable, nutrient-rich environments such as the intestinal tract of animals.↵↵The presence of P. plebeius strain TF10-3AC within animal intestinal microflora indicates its potential involvement in the digestion of dietary components and possibly in the modulation of the host’s immune responses. Understanding the specific contributions of this strain to gut health and function could provide insights into the role of anaerobic bacteria in overall host well-being and the maintenance of intestinal homeostasis." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola plebeius Negative Rod No 1 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 310297 QSQT00000000.1 Bac0019215 Bacteroides uniformis strain TF08-13 "Bacteroides uniformis strain TF08-13 is a Gram-negative anaerobic bacterium primarily inhabiting the gastrointestinal tract, specifically within the gut luminal niche of its host. As a member of the Bacteroides genus, this strain plays a significant role in the complex microbial community of the intestinal tract, contributing to various metabolic processes essential for gut health. The anaerobic nature of Bacteroides uniformis TF08-13 suggests that it thrives in low-oxygen environments, utilizing fermentation pathways to derive energy from dietary polysaccharides and other substrates present in the gut. This metabolic capability is crucial for breaking down complex carbohydrates, thereby assisting in nutrient absorption and promoting overall digestive health.↵↵Furthermore, the presence of Bacteroides uniformis in the gut microbiota underlines its potential role in maintaining gut homeostasis, influencing host immune responses, and competing with pathogenic microbes. The unique ecological niche occupied by this strain highlights its importance in the gut ecosystem, where it may contribute to the modulation of the host metabolism and the maintenance of a balanced microbial community. Understanding the specific functions and interactions of Bacteroides uniformis strain TF08-13 may provide insights into its contributions to gut health and the potential implications for gut-related disorders." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 QSRK00000000.1 Bac0019216 Bifidobacterium adolescentis strain TF06-29 "Bifidobacterium adolescentis strain TF06-29 is a Gram-positive, non-sporulating rod-shaped bacterium that typically exists as single cells. This strain is an anaerobic organism, thriving in environments devoid of oxygen, which aligns with its classification as a host-associated microbe. The optimal growth temperature for B. adolescentis strain TF06-29 is approximately 37.0°C, suggesting its adaptation to mammalian hosts, where it may play a role in gut microbiota composition.↵↵As a member of the Bifidobacterium genus, this strain is likely involved in the fermentation of carbohydrates, contributing to the production of short-chain fatty acids, which are beneficial for host health. While the specific ecological roles and interactions of B. adolescentis strain TF06-29 within the host microbiome are not detailed here, its presence is typically associated with a balanced gut microbiome, which may influence metabolic processes and immune responses.↵↵Insights from recent research indicate that strains like Bifidobacterium adolescentis may contribute to the modulation of the host’s immune system, potentially offering protective benefits against gastrointestinal disorders. Understanding the specific dynamics of strain TF06-29 can enhance our knowledge of its contributions to gut health and its potential applications in probiotic development." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Singles Nonsporulating 1680 QSSC00000000.1 Bac0019217 Phocaeicola vulgatus strain TF05-18 "Phocaeicola vulgatus strain TF05-18 is a Gram-positive, rod-shaped bacterium that exists as single cells and is classified as an anaerobe, indicating its growth in environments devoid of oxygen. This strain is host-associated, implying a close relationship with a specific host organism, which may suggest a specialized role within the host's microbiome. ↵↵The Gram-positive nature of P. vulgatus TF05-18 is characterized by a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can withstand certain environmental pressures. Its rod shape may confer advantages in motility or colonization within the host environment, although precise mechanisms remain to be elucidated.↵↵As an anaerobic organism, P. vulgatus TF05-18 likely participates in fermentative processes, contributing to the metabolic activities of the host's microbiota. This strain may play a role in the breakdown of complex polysaccharides or other organic substrates, generating short-chain fatty acids that are beneficial for host health. ↵↵Understanding the specific interactions and functions of P. vulgatus TF05-18 in its host could provide insights into the broader ecological dynamics of host-associated microbial communities, particularly regarding nutrient cycling and the maintenance of gut health. Further research may illuminate its potential contributions to symbiotic relationships within the host organism." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QSSN00000000.1 Bac0019218 Hungatella hathewayi strain TF05-11AC "Hungatella hathewayi strain TF05-11AC is a Gram-positive, rod-shaped bacterium that exhibits sporulation and thrives in anaerobic environments, typically found within the intestinal microflora of animals. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. It has an optimal growth temperature of 37.0°C, which aligns with the physiological conditions typically found in the intestines of warm-blooded animals.↵↵The ability to form spores suggests that H. hathewayi strain TF05-11AC may possess mechanisms for survival under adverse conditions, allowing it to endure fluctuations in the intestinal environment. Its presence in the animal gut microbiome emphasizes its potential role in digestive processes and the maintenance of intestinal health. Additionally, the strain's anaerobic nature reflects its adaptation to the low-oxygen environments characteristic of the gut, where it may engage in complex interactions with other microbial inhabitants.↵↵Overall, the traits of Hungatella hathewayi strain TF05-11AC highlight its significance in the gut ecosystem, particularly in relation to nutrient cycling and microbial community dynamics, which may influence host health and metabolic functions. Understanding these traits contributes to the broader knowledge of microbial diversity and function within animal intestines." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi Positive Rod No 1 Anaerobic 37 Chemoheterotroph Animal intestinal microflora Sporulating 154046 QSSQ00000000.1 Bac0019219 Bacteroides stercoris strain TF03-6 "Bacteroides stercoris strain TF03-6 is a Gram-negative, strictly anaerobic bacterium. This strain is a member of the Bacteroides genus, which is known for its role in the human gut microbiome, particularly in the digestion of complex carbohydrates and the production of short-chain fatty acids. Bacteroides species, including Bacteroides stercoris, are typically prevalent in the intestines, where they contribute to maintaining gut health and supporting immune function.↵↵The anaerobic nature of Bacteroides stercoris strain TF03-6 suggests that it thrives in environments devoid of oxygen, which is characteristic of the intestinal tract. This adaptation allows the strain to metabolize various substrates that are not accessible to aerobic organisms, potentially enhancing its ecological niche within the gut microbiome. ↵↵While specific interactions of strain TF03-6 with other microbial species or its exact contributions to gut physiology remain to be fully elucidated, its presence in anaerobic environments indicates a possible role in competitive exclusion of pathogenic microbes and in the modulation of inflammatory responses. The unique metabolic capabilities of Bacteroides stercoris strain TF03-6 may also provide insights into the development of probiotics or therapeutic strategies aimed at promoting gut health. Further research is warranted to clarify the ecological significance and functional roles of this strain within the complex community of gut microbiota." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 QSSV00000000.1 Bac0019220 Eubacterium sp. OM08-24 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. OM08-24 2292352 QSTA00000000.1 Bac0019221 Phocaeicola vulgatus strain OM08-13BH "Phocaeicola vulgatus strain OM08-13BH is a Gram-positive, rod-shaped anaerobic bacterium that is typically found in host-associated environments. This strain exhibits a single-cell arrangement, which is characteristic of its genus. As an anaerobe, P. vulgatus strain OM08-13BH thrives in environments devoid of oxygen, suggesting its adaptation to the anaerobic conditions often present within the gastrointestinal tracts of various hosts.↵↵The host-associated habitat of P. vulgatus indicates its potential role in symbiotic relationships, likely contributing to the microbial community dynamics within its specific ecological niche. While the precise ecological interactions of this strain remain to be fully elucidated, its presence in host-associated habitats may imply its involvement in processes such as nutrient metabolism or maintenance of gut homeostasis. The isolation of this strain underscores the significance of anaerobic bacteria in the microbiome and their potential contributions to the overall health and function of their host organisms. Further investigation into the metabolic capabilities and interactions of P. vulgatus strain OM08-13BH could provide insights into its role within complex microbial communities." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 QSTG00000000.1 Bac0019222 Agathobacter rectalis strain OM08-12AT "Agathobacter rectalis strain OM08-12AT is a Gram-positive, nonsporulating rod-shaped bacterium that is classified as a chemoheterotroph. It thrives optimally at a temperature of 37.0°C and requires anaerobic conditions for growth. This strain exhibits metabolic versatility, utilizing a range of organic compounds as energy sources, which is indicative of its adaptation to diverse habitats. ↵↵The anaerobic nature of A. rectalis strain OM08-12AT suggests that it plays a significant role in environments where oxygen is limited, such as the gastrointestinal tracts of various organisms. Its ability to thrive in multiple habitats underscores its ecological significance, potentially contributing to the maintenance of microbial communities in anaerobic environments. ↵↵The traits of this strain highlight its potential role in biochemical processes, such as fermentation, within anaerobic ecosystems. Understanding the specific metabolic pathways and interactions of A. rectalis strain OM08-12AT could provide insights into its contribution to nutrient cycling and overall microbial diversity in these habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSTI00000000.1 Bac0019223 Bacteroides sp. OM08-11 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. OM08-11 2292284 QSTJ00000000.1 Bac0019224 Agathobacter rectalis strain OM07-13 "Agathobacter rectalis strain OM07-13 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain is part of a diverse group of microbes that inhabit multiple ecological niches, suggesting its adaptability to various anaerobic habitats, potentially including human gastrointestinal tracts and other organic-rich environments.↵↵As a chemoheterotroph, A. rectalis strain OM07-13 relies on organic compounds for both carbon and energy, which may position it as an important player in the nutrient cycling processes within its habitats. Its anaerobic nature indicates a specialization in environments devoid of oxygen, where it may contribute to the degradation of complex organic materials, thereby influencing microbial community dynamics and metabolic processes.↵↵The ability of A. rectalis to thrive in diverse anaerobic conditions could have implications for its role in maintaining gut health or participating in biogeochemical cycles in its natural environments. Further investigation into its ecological functions could reveal insights into its interactions with other microbial species and its potential contributions to overall ecosystem stability." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Agathobacter Agathobacter rectalis Positive Rod No 1 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Free living Nonsporulating 39491 QSTP00000000.1 Bac0019225 Streptococcus ilei strain OM06-9 "Streptococcus ilei strain OM06-9 is a Gram-positive, coccoid bacterium that exhibits facultative anaerobic growth characteristics. This strain, belonging to the genus Streptococcus, is characterized by its spherical shape and ability to thrive in both aerobic and anaerobic environments, suggesting a metabolic versatility that may allow it to adapt to varying oxygen levels in its ecological niche. ↵↵As a member of the Streptococcus genus, S. ilei strain OM06-9 is presumed to share some common physiological traits with other species in this group, such as the potential for fermentation and a role in carbohydrate metabolism. The facultative anaerobic nature of this strain indicates that it can utilize oxygen when available, but can also switch to fermentation pathways in its absence, which may confer an advantage in fluctuating environments where oxygen levels change.↵↵The presence of S. ilei strain OM06-9 in specific habitats could provide insights into its ecological role, particularly in environments where organic matter decomposition occurs. Its ability to thrive under varying oxygen conditions suggests it may play a significant role in nutrient cycling and the maintenance of microbial community dynamics in these ecosystems. Further research could elucidate the specific interactions this strain has with its environment and other microbial inhabitants, contributing to our understanding of microbial ecology and the functional roles of Streptococcus species in diverse habitats." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus ilei Positive Cocci Facultative anaerobe 1156431 QSTR00000000.1 Bac0019226 Parabacteroides merdae strain OM06-16AC "Parabacteroides merdae strain OM06-16AC is a Gram-negative, anaerobic bacterium. As a member of the genus Parabacteroides, this strain is characterized by its inability to survive in the presence of oxygen, reflecting its adaptation to anaerobic environments, which are often found in the gastrointestinal tracts of various hosts. ↵↵The Gram-negative nature of Parabacteroides merdae strain OM06-16AC indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of this classification. This structural feature may play a role in the bacterium's interactions within its ecological niche, potentially influencing its resistance to certain antimicrobial agents and its overall survival strategy in anaerobic conditions. ↵↵Understanding the traits of Parabacteroides merdae strain OM06-16AC provides insight into the diverse metabolic capabilities of anaerobic bacteria and their roles in complex microbial communities. Given its anaerobic requirement, this strain likely contributes to the fermentation processes within its environment, potentially participating in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host health and gut homeostasis. This emphasizes the importance of anaerobic bacteria in maintaining microbial balance and nutrient cycling in anaerobic ecosystems." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides merdae Negative Anaerobe 46503 QSTY00000000.1 Bac0019227 Blautia obeum strain OM06-11AA "Blautia obeum strain OM06-11AA is a Gram-positive, nonsporulating cocci that functions as a chemoheterotroph, primarily residing in the anaerobic environment of animal intestinal microflora. This strain plays a significant role in the gut ecosystem, where it contributes to the fermentation of complex carbohydrates, aiding in the digestion process of its host. The anaerobic nature of Blautia obeum indicates its adaptation to low-oxygen environments, typical of the intestinal tract, where it thrives alongside a diverse community of microorganisms.↵↵As part of the gut microbiota, Blautia obeum strain OM06-11AA may be involved in various metabolic processes that impact host health and nutrition. While the specific metabolic pathways utilized by this strain have not been detailed, its role as a chemoheterotroph suggests a reliance on organic compounds derived from the host's diet or other gut microbes for energy. This interdependence underscores the intricate relationships within the gut microbiome and highlights the potential significance of Blautia obeum in maintaining a balanced intestinal ecosystem. Further research may elucidate its specific contributions to gut health and its interactions with other microbial species, emphasizing the importance of this strain in the broader context of microbiome studies." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QSUB00000000.1 Bac0019228 Bacteroides sp. OM05-12 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. OM05-12 2292283 QSUN00000000.1 Bac0019229 Bacteroides sp. OM05-10AA Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. OM05-10AA 2292282 QSUR00000000.1 Bac0019230 Bacteroides fragilis strain OM04-9BH "Bacteroides fragilis strain OM04-9BH is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at 37.0°C, which aligns with the human body temperature, indicating its adaptation to a host-associated habitat. As a chemoorganotroph, B. fragilis strain OM04-9BH derives its energy from organic compounds, reflecting its ecological role in the gastrointestinal microbiota where it contributes to the degradation of complex carbohydrates and other organic materials.↵↵Characteristically, B. fragilis is an anaerobic organism, which means it grows in environments devoid of oxygen. This trait is particularly significant as it highlights the bacterium's ecological niche within the anaerobic conditions of the intestinal tract, where it plays a vital role in maintaining a balanced microbiome. The presence of B. fragilis strains such as OM04-9BH underscores the importance of anaerobic bacteria in gut health and the metabolic processes that contribute to nutrient absorption and overall host well-being.↵↵Understanding the specific traits of Bacteroides fragilis strain OM04-9BH can provide insights into its functional role in the host's microbiome, particularly in the metabolism of dietary fibers and the production of short-chain fatty acids, which are essential for maintaining intestinal health and influencing immune responses." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 QSUS00000000.1 Bac0019231 Blautia obeum strain OM03-6 "Blautia obeum strain OM03-6 is a Gram-positive, nonsporulating coccus that exhibits chemoheterotrophic metabolism, relying on organic compounds as its energy source. This bacterium is part of the animal intestinal microflora, where it plays a role in digestive processes and the maintenance of gut health. As an anaerobic organism, Blautia obeum strain OM03-6 thrives in low-oxygen environments, typical of the gastrointestinal tract.↵↵The presence of Blautia obeum in the gut microbiome may contribute to the fermentation of dietary fibers and the production of short-chain fatty acids, which are important for host metabolism and immune function. Additionally, its role as a member of the intestinal microbiota could be essential for the overall balance of microbial communities, potentially influencing host health through interactions with other gut microbes.↵↵Understanding the characteristics of Blautia obeum strain OM03-6 enriches our knowledge of gut microbiota composition and function, highlighting its potential importance in digestive health and microbial ecology. This strain exemplifies how specific microbial traits can inform us about the ecological niches that such organisms occupy, further emphasizing the intricate relationships that exist within the gastrointestinal environment." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia obeum Positive Cocci No 1 Anaerobic Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 40520 QSUZ00000000.1 Bac0019232 Dorea sp. OM02-2LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea sp. OM02-2LB 2292347 QSVK00000000.1 Bac0019233 Dorea longicatena strain OM02-16 "Dorea longicatena strain OM02-16 is a Gram-positive, anaerobic bacterium characterized by its ability to thrive in oxygen-deprived environments. This strain exemplifies the metabolic adaptations typical of anaerobes, allowing it to participate in various biochemical processes in its natural habitat. Dorea longicatena is part of the family Lachnospiraceae and is known for its involvement in the fermentation of dietary fibers, contributing to the complex microbial ecosystems found in the gastrointestinal tracts of various hosts.↵↵The anaerobic nature of Dorea longicatena strain OM02-16 suggests that it likely plays a role in the breakdown of complex carbohydrates, producing short-chain fatty acids as metabolic byproducts. These fatty acids are critical for maintaining gut health and influencing host metabolism. Its Gram-positive cell wall structure may enhance its resilience in competitive microbial communities, enabling it to establish itself within the gut microbiome. ↵↵Furthermore, the presence of Dorea longicatena strain OM02-16 in specific environmental niches may indicate its potential role in nutrient cycling, particularly in anaerobic environments where it can contribute to the degradation of organic matter. This unique adaptation underscores the importance of anaerobic microbes in maintaining ecological balance and nutrient availability in their respective habitats." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Dorea Dorea longicatena Positive Anaerobe 88431 QSVN00000000.1 Bac0019234 Bacteroides fragilis strain OF05-11AC "Bacteroides fragilis strain OF05-11AC is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a chemoorganotroph, B. fragilis strain OF05-11AC relies on organic compounds for its energy needs, underscoring its role in nutrient cycling within the host environment. ↵↵Notably, this strain is classified as an anaerobe, indicating that it thrives in oxygen-free environments, which is characteristic of many members of the Bacteroides genus. The anaerobic metabolism is significant as it allows the organism to inhabit and contribute to the complex microbial communities found in the gastrointestinal tracts of various hosts. ↵↵Understanding the specific traits of Bacteroides fragilis strain OF05-11AC can provide insights into its potential roles in the gut microbiome, including its involvement in metabolic processes and interactions with the host immune system. The ability of this strain to exist in a host-associated habitat while maintaining an anaerobic lifestyle highlights the adaptive strategies employed by Bacteroides species in symbiotic relationships within their ecological niches." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 QSWE00000000.1 Bac0019235 Deminuibacter soli strain K23C18032701 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Deminuibacter Deminuibacter soli 2291815 QTJU00000000.1 Bac0019236 Chitinophaga silvisoli strain K20C18050901 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga silvisoli 2291814 QTJV00000000.1 Bac0019237 Halobacillus trueperi strain SS1 C11952 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus trueperi 156205 QTLC00000000.1 Bac0019238 Bacteroides sp. AF39-16AC Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF39-16AC 2292936 QTLN00000000.1 Bac0019239 Clostridiales bacterium AF36-10 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium AF36-10 2292883 QTLT00000000.1 Bac0019240 Bacteroides sp. AF35-22 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF35-22 2292932 QTLU00000000.1 Bac0019241 Bacteroides sp. AF25-18 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF25-18 2292923 QTME00000000.1 Bac0019242 Bacteroides sp. AF25-17LB Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF25-17LB 2292922 QTMF00000000.1 Bac0019243 Bacteroides sp. AF20-13LB Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AF20-13LB 2292921 QTMH00000000.1 Bac0019244 Clostridium sp. AF15-41 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF15-41 2292996 QTMQ00000000.1 Bac0019245 Bacteroides sp. AM54-2NS Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM54-2NS 2292955 QTMZ00000000.1 Bac0019246 Bacteroides sp. AM44-19 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM44-19 2292953 QTNB00000000.1 Bac0019247 Bacteroides sp. AM41-16 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM41-16 2292952 QTNE00000000.1 Bac0019248 Bacteroides sp. AM37-9 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM37-9 2292951 QTNF00000000.1 Bac0019249 Bacteroides sp. AM30-16 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. AM30-16 2292949 QTNI00000000.1 Bac0019250 Streptococcus sp. AM28-20 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. AM28-20 2293246 QTNK00000000.1 Bac0019251 Burkholderia ubonensis strain Bp8958 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia ubonensis 101571 QTOC00000000.1 Bac0019252 Burkholderia stagnalis strain Bp9133 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia stagnalis 1503054 QTOL00000000.1 Bac0019253 Burkholderia sp. Bp9125 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp9125 2184569 QTPT00000000.1 Bac0019254 Burkholderia sp. Bp8992 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia sp. Bp8992 2184554 QTQI00000000.1 Bac0019255 Burkholderia contaminans strain Bp9001 "Burkholderia contaminans strain Bp9001 is a Gram-negative bacterium characterized by its distinct cellular morphology and biochemical properties. As a member of the Burkholderia genus, this strain is notable for its adaptability to various environmental conditions, which is often a hallmark of its relatives. The Gram-negative nature of strain Bp9001 indicates the presence of an outer membrane containing lipopolysaccharides, contributing to its structural integrity and influencing its interactions with the surrounding environment.↵↵While specific ecological roles or pathogenicity data for Burkholderia contaminans strain Bp9001 are not provided, members of the Burkholderia genus are known for their versatile metabolic capabilities, allowing them to thrive in diverse habitats, including soil and water environments. This adaptability suggests that strain Bp9001 may play a role in nutrient cycling within its ecosystem, potentially contributing to the degradation of organic compounds or the bioavailability of nutrients for other organisms.↵↵In summary, Burkholderia contaminans strain Bp9001 represents a Gram-negative bacterium with potential ecological significance, possibly influencing its environment through various metabolic processes. Further research into its specific interactions and functions within its habitat would be valuable to fully understand its role in microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia contaminans Negative 488447 QTQX00000000.1 Bac0019256 Burkholderia cenocepacia strain Bp9145 "Burkholderia cenocepacia strain Bp9145 is a Gram-negative, rod-shaped bacterium characterized by its facultative aerobic metabolism and nonsporulating nature. This strain is part of a diverse genus known for its adaptability to various environments, as indicated by its presence in multiple habitats. The facultative aerobic requirement suggests that Bp9145 can thrive in both oxygen-rich and oxygen-poor conditions, allowing it to occupy a range of ecological niches.↵↵The rod shape of B. cenocepacia strain Bp9145 may contribute to its motility and ability to form biofilms, which are important traits for survival in various environments. Its nonsporulating nature suggests that it relies on alternative survival strategies rather than forming spores, which may limit its resilience under extreme conditions typically associated with spore-forming bacteria.↵↵Understanding the metabolic flexibility and ecological versatility of B. cenocepacia strain Bp9145 may provide insights into its role in biogeochemical cycles and its interactions within microbial communities. This adaptability could also suggest potential applications in bioremediation or biotechnology, emphasizing the importance of studying such strains in diverse microbial ecosystems." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 QTRS00000000.1 Bac0019257 Burkholderia cenocepacia strain Bp9009 "Burkholderia cenocepacia strain Bp9009 is a Gram-negative, rod-shaped bacterium that exhibits a facultative aerobic metabolism, allowing it to thrive in a variety of oxygen conditions. This strain does not undergo sporulation, which may influence its survival strategies in diverse environments. The habitat of B. cenocepacia strain Bp9009 is characterized as multiple, suggesting its adaptability to different ecological niches, which could include both soil and aquatic environments.↵↵The facultative aerobic nature of this strain indicates its ability to switch between aerobic respiration and anaerobic processes, a trait that may confer advantages in fluctuating environmental conditions. This metabolic flexibility likely enhances its survivability and ecological versatility, allowing it to exploit a range of substrates and compete with other microorganisms in its habitat.↵↵Furthermore, the nonsporulating characteristic of B. cenocepacia strain Bp9009 may provide insights into its ecological interactions, as this trait could indicate a reliance on vegetative growth strategies over dormancy. Understanding the ecological role and adaptability of this strain could contribute to broader research into the ecological dynamics of Burkholderia species, particularly in environments where they coexist with other microbial populations that may exhibit different survival strategies. The ecological insights gained from studying B. cenocepacia strain Bp9009 may further illuminate the complex interactions within microbial communities." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cenocepacia Negative Rod Yes 1 2 Facultative aerobe Mesophilic Multiple Free living Nonsporulating 95486 QTSG00000000.1 Bac0019258 Burkholderia anthina strain Bp8997 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia anthina 179879 QTST00000000.1 Bac0019259 Calidifontibacter indicus strain DSM 22967 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Calidifontibacter Calidifontibacter indicus 419650 QTUA00000000.1 Bac0019260 Blautia sp. AM23-13AC Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AM23-13AC 2292971 QTUL00000000.1 Bac0019261 Ruminococcus sp. AM22-14LB Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM22-14LB 2293187 QTUP00000000.1 Bac0019262 Firmicutes bacterium AM10-47 Bacillati Bacillota Firmicutes bacterium AM10-47 2292890 QTUU00000000.1 Bac0019263 Ruminococcus sp. AF43-11 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF43-11 2293181 QTVA00000000.1 Bac0019264 Eubacterium sp. AF36-5BH Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AF36-5BH 2293108 QTVG00000000.1 Bac0019265 Coprobacillus sp. AF27-24BH Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AF27-24BH 2293067 QTVZ00000000.1 Bac0019266 Ruminococcus sp. AF25-19 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF25-19 2293165 QTWF00000000.1 Bac0019267 Ruminococcus sp. AF25-17 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF25-17 2293164 QTWG00000000.1 Bac0019268 Eubacterium sp. AF17-7 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AF17-7 2293105 QTWU00000000.1 Bac0019269 Ruminococcus sp. AF17-6 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF17-6 2293154 QTWW00000000.1 Bac0019270 Coprobacillus sp. AF17-11AC Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AF17-11AC 2293063 QTXB00000000.1 Bac0019271 Ruminococcus sp. AF17-11 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF17-11 2293150 QTXC00000000.1 Bac0019272 Ruminococcus sp. AF16-50 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF16-50 2293149 QTXD00000000.1 Bac0019273 Alistipes sp. AF14-19 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. AF14-19 2292910 QTXM00000000.1 Bac0019274 Ruminococcus sp. AF12-5 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF12-5 2293146 QTXN00000000.1 Bac0019275 Anaerostipes sp. AF04-45 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerostipes Anaerostipes sp. AF04-45 2292912 QTXQ00000000.1 Bac0019276 Ruminococcus sp. AM43-6 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM43-6 2293216 QTXU00000000.1 Bac0019277 Ruminococcus sp. AM36-18 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM36-18 2293209 QTYC00000000.1 Bac0019278 Ruminococcus sp. AM33-14 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM33-14 2293205 QTYE00000000.1 Bac0019279 Ruminococcus sp. AM31-15AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM31-15AC 2293202 QTYG00000000.1 Bac0019280 Ruminococcus sp. AM28-29LB Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM28-29LB 2293195 QTYN00000000.1 Bac0019281 Ruminococcus sp. AM27-27 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM27-27 2293193 QTYP00000000.1 Bac0019282 Ruminococcus sp. TF08-4 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. TF08-4 2293238 QTYY00000000.1 Bac0019283 Coprococcus sp. OM06-34AC Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. OM06-34AC 2293095 QTZF00000000.1 Bac0019284 Ruminococcus sp. OM04-4AA Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. OM04-4AA 2293231 QTZH00000000.1 Bac0019285 Labilibaculum euxinus strain 44 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Labilibaculum Labilibaculum euxinicum 2686357 QTZN00000000.2 Bac0019286 Pseudodesulfovibrio sp. S3 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio sp. S3 2283629 QTZO00000000.1 Bac0019287 Microbacterium bovistercoris strain NEAU-LLE Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium bovistercoris 2293570 QUAB00000000.1 Bac0019288 Candidatus Saccharicenans subterraneus Candidatus Aminicenantota Candidatus Aminicenantia Candidatus Aminicenantales Candidatus Saccharicenantaceae Candidatus Saccharicenans Candidatus Saccharicenans subterraneus 2508984 QUAH00000000.1 Bac0019289 Rhodococcus erythropolis strain ATCC 15903 "Rhodococcus erythropolis strain ATCC 15903 is a Gram-positive, filamentous rod-shaped bacterium that thrives under aerobic conditions. This strain is notable for its ability to grow optimally at a temperature of 20.0°C, indicating a preference for cooler environments. Rhodococcus erythropolis is known to inhabit a variety of ecological niches, reflecting its versatile metabolic capabilities and adaptability to different habitats.↵↵The filamentous arrangement of its cells may contribute to the organism's survival in complex environments, potentially aiding in biofilm formation and nutrient acquisition. This structural characteristic, combined with its aerobic nature, suggests that R. erythropolis could play a significant role in the degradation of organic compounds in oxygen-rich habitats. ↵↵Furthermore, the diverse habitats occupied by this strain imply its potential involvement in biogeochemical cycles, particularly in the degradation of pollutants or organic materials in soil and water ecosystems. The ecological versatility of R. erythropolis ATCC 15903 highlights its potential utility in bioremediation applications, where its metabolic processes could be harnessed to address environmental contamination issues. This strain exemplifies the importance of microbial diversity in maintaining ecological balance and promoting environmental health." Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis Positive Rod No 1 Aerobe 20 Mesophilic Multiple Free living Filaments 1833 QUAI00000000.1 Bac0019290 Paenibacillus paeoniae strain M4BSY-1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus paeoniae 2292705 QUBQ00000000.1 Bac0019291 Clostridium sp. AM22-16AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM22-16AC 2292009 QUCL00000000.1 Bac0019292 Erysipelotrichaceae bacterium AM17-60 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium AM17-60 2291992 QUCU00000000.1 Bac0019293 Coprobacillus sp. AM17-34 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AM17-34 2293074 QUCV00000000.1 Bac0019294 Roseburia sp. AM16-25 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AM16-25 2292065 QUCW00000000.1 Bac0019295 Ruminococcus sp. AM12-48 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM12-48 2293183 QUDA00000000.1 Bac0019296 Tannerella sp. AM09-19 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella sp. AM09-19 2293249 QUDD00000000.1 Bac0019297 Eubacterium sp. AM05-23 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp. AM05-23 2292043 QUDF00000000.1 Bac0019298 Butyricicoccus sp. AM05-1 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AM05-1 2292004 QUDG00000000.1 Bac0019299 Alistipes sp. AF48-12 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. AF48-12 2291998 QUDJ00000000.1 Bac0019300 Ruminococcus sp. AF42-9BH Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF42-9BH 2292070 QUDM00000000.1 Bac0019301 Clostridiaceae bacterium AF42-6 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium AF42-6 2291990 QUDN00000000.1 Bac0019302 Clostridium sp. AF37-5 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF37-5 2293016 QUDR00000000.1 Bac0019303 Firmicutes bacterium AF36-19BH Bacillati Bacillota Firmicutes bacterium AF36-19BH 2292888 QUDT00000000.1 Bac0019304 Clostridium sp. AF36-18BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF36-18BH 2293014 QUDU00000000.1 Bac0019305 Butyricicoccus sp. AF35-5AC Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AF35-5AC 2292003 QUDX00000000.1 Bac0019306 Clostridium sp. AF35-15 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF35-15 2293013 QUDY00000000.1 Bac0019307 Clostridium sp. AF34-13 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF34-13 2293012 QUEB00000000.1 Bac0019308 Clostridium sp. AF34-10BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF34-10BH 2293011 QUEC00000000.1 Bac0019309 Clostridium sp. AF32-7AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF32-7AC 2293010 QUEG00000000.1 Bac0019310 Clostridium sp. AF32-12BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF32-12BH 2292006 QUEH00000000.1 Bac0019311 Clostridiaceae bacterium AF31-3BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium AF31-3BH 2291989 QUEI00000000.1 Bac0019312 Coprobacillus sp. AF31-1BH Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AF31-1BH 2293069 QUEJ00000000.1 Bac0019313 Bacteroides sp. OF04-15BH Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides sp. OF04-15BH 2292281 QUEM00000000.1 Bac0019314 Coprobacillus sp. OF03-2AA Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. OF03-2AA 2293083 QUEO00000000.1 Bac0019315 Firmicutes bacterium AM59-13 Bacillati Bacillota Firmicutes bacterium AM59-13 2292897 QUEU00000000.1 Bac0019316 Clostridium sp. AM48-13 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM48-13 2293034 QUFD00000000.1 Bac0019317 Clostridium sp. AF27-2AA Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF27-2AA 2292206 QUFI00000000.1 Bac0019318 Roseburia sp. AF25-15LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AF25-15LB 2293133 QUFN00000000.1 Bac0019319 Firmicutes bacterium AF25-13AC Bacillati Bacillota Firmicutes bacterium AF25-13AC 2292181 QUFP00000000.1 Bac0019320 Blautia sp. AF25-12LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AF25-12LB 2292965 QUFQ00000000.1 Bac0019321 Butyricicoccus sp. AF24-19AC Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AF24-19AC 2292199 QUFU00000000.1 Bac0019322 Clostridium sp. AF22-10 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF22-10 2293004 QUFZ00000000.1 Bac0019323 Ruminococcus sp. AF21-42 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF21-42 2292251 QUGB00000000.1 Bac0019324 Ruminococcus sp. AF21-3 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF21-3 2292250 QUGC00000000.1 Bac0019325 Clostridium sp. AF21-20LB Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF21-20LB 2293003 QUGD00000000.1 Bac0019326 Peptoclostridium sp. AF21-18 Bacillati Bacillota Clostridia Peptostreptococcales Peptoclostridiaceae Peptoclostridium Peptoclostridium sp. AF21-18 2292243 QUGE00000000.1 Bac0019327 Clostridium sp. AF20-7 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF20-7 2293002 QUGF00000000.1 Bac0019328 Clostridium sp. AF20-17LB Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF20-17LB 2292205 QUGG00000000.1 Bac0019329 Ruminococcus sp. AF20-12LB Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF20-12LB 2293160 QUGH00000000.1 Bac0019330 Ruminococcus sp. AF19-29 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF19-29 2293158 QUGM00000000.1 Bac0019331 Clostridium sp. AF18-27 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AF18-27 2292203 QUGT00000000.1 Bac0019332 Blautia sp. AF17-9LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AF17-9LB 2292959 QUGU00000000.1 Bac0019333 Parabacteroides sp. AF17-28 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. AF17-28 2292241 QUGV00000000.1 Bac0019334 Alistipes sp. AF17-16 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes sp. AF17-16 2292190 QUGX00000000.1 Bac0019335 Butyricicoccus sp. AF15-40 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AF15-40 2292197 QUHE00000000.1 Bac0019336 Roseburia sp. AF15-21 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. AF15-21 2293128 QUHG00000000.1 Bac0019337 Ruminococcus sp. AF14-5 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AF14-5 2293147 QUHI00000000.1 Bac0019338 Coprobacillus sp. AF13-4LB Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Coprobacillus Coprobacillus sp. AF13-4LB 2293060 QUHL00000000.1 Bac0019339 Butyricicoccus sp. AF10-3 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AF10-3 2292196 QUHS00000000.1 Bac0019340 Clostridium sp. AM46-21 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM46-21 2293033 QUIB00000000.1 Bac0019341 Clostridium sp. AM45-5 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM45-5 2292306 QUIE00000000.1 Bac0019342 Ruminococcus sp. AM45-2 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM45-2 2293218 QUIF00000000.1 Bac0019343 Butyricicoccus sp. AM42-5AC Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AM42-5AC 2292297 QUIJ00000000.1 Bac0019344 Clostridium sp. AM42-4 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM42-4 2292305 QUIK00000000.1 Bac0019345 Clostridium sp. AM42-36 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM42-36 2293031 QUIL00000000.1 Bac0019346 Blautia sp. AM42-2 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AM42-2 2292976 QUIM00000000.1 Bac0019347 Ruminococcus sp. AM40-10AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM40-10AC 2293212 QUIR00000000.1 Bac0019348 Ruminococcus sp. AM36-17 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM36-17 2293208 QUIS00000000.1 Bac0019349 Clostridium sp. AM33-3 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM33-3 2292304 QUIV00000000.1 Bac0019350 Clostridium sp. AM32-2 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM32-2 2293029 QUIW00000000.1 Bac0019351 Clostridium sp. AM30-24 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM30-24 2292303 QUJB00000000.1 Bac0019352 Firmicutes bacterium AM29-6AC Bacillati Bacillota Firmicutes bacterium AM29-6AC 2292891 QUJC00000000.1 Bac0019353 Clostridium sp. AM29-11AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. AM29-11AC 2293028 QUJI00000000.1 Bac0019354 Ruminococcaceae bacterium AM28-23LB Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium AM28-23LB 2292269 QUJM00000000.1 Bac0019355 Blautia sp. AM28-10 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia sp. AM28-10 2292972 QUJP00000000.1 Bac0019356 Clostridiaceae bacterium AM27-36LB Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium AM27-36LB 2292288 QUJQ00000000.1 Bac0019357 Butyricicoccus sp. AM27-36 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. AM27-36 2292293 QUJR00000000.1 Bac0019358 Absiella sp. AM27-20 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacterium Absiella sp. AM27-20 2292277 QUJU00000000.1 Bac0019359 Ruminococcus sp. AM27-16 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM27-16 2293192 QUJV00000000.1 Bac0019360 Ruminococcus sp. AM26-12LB Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. AM26-12LB 2293190 QUJX00000000.1 Bac0019361 Parabacteroides sp. TM07-1AC Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides sp. TM07-1AC 2292363 QUKD00000000.1 Bac0019362 Clostridium sp. TF11-13AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. TF11-13AC 2293053 QUKJ00000000.1 Bac0019363 Ruminococcaceae bacterium TF06-43 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcaceae bacterium TF06-43 2292270 QUKQ00000000.1 Bac0019364 Clostridiaceae bacterium OM08-6BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium OM08-6BH 2292274 QUKV00000000.1 Bac0019365 Clostridium sp. OM08-29 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OM08-29 2293049 QUKW00000000.1 Bac0019366 Clostridium sp. OM07-9AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OM07-9AC 2293048 QUKY00000000.1 Bac0019367 Firmicutes bacterium OM07-11 Bacillati Bacillota Firmicutes bacterium OM07-11 2292900 QULB00000000.1 Bac0019368 Clostridium sp. OM07-10AC Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OM07-10AC 2293047 QULC00000000.1 Bac0019369 Ruminococcus sp. OM05-7 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. OM05-7 2293232 QULG00000000.1 Bac0019370 Clostridium sp. OM05-6BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OM05-6BH 2293044 QULH00000000.1 Bac0019371 Clostridium sp. OM05-5BH Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OM05-5BH 2293043 QULJ00000000.1 Bac0019372 Ruminococcus sp. OM05-10BH Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. OM05-10BH 2292374 QULK00000000.1 Bac0019373 Butyricicoccus sp. OM04-18BH Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. OM04-18BH 2292300 QULN00000000.1 Bac0019374 Lachnospiraceae bacterium OM04-12BH Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium OM04-12BH 2292272 QULQ00000000.1 Bac0019375 Roseburia sp. OM04-10AA Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp. OM04-10AA 2293141 QULT00000000.1 Bac0019376 Lachnospiraceae bacterium OM02-26 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium OM02-26 2292908 QULV00000000.1 Bac0019377 Lachnospiraceae bacterium OF09-33XD Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium OF09-33XD 2292273 QUME00000000.1 Bac0019378 Clostridium sp. OF09-10 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. OF09-10 2292309 QUMH00000000.1 Bac0019379 Propionibacterium sp. KPL2009 strain OF05-25 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propionibacterium Propionibacterium sp. KPL2009 1203635 QUMJ00000000.1 Bac0019380 Pelolinea submarina strain DSM 23923 Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Pelolinea Pelolinea submarina 913107 QUMS00000000.1 Bac0019381 Jeotgalicoccus halotolerans strain DSM 17274 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Jeotgalicoccus Jeotgalicoccus halotolerans 157227 QUMW00000000.1 Bac0019382 Paraburkholderia sp. BL6669N2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL6669N2 1938807 QUNA00000000.1 Bac0019383 Marinomonas pollencensis strain CECT 7375 "Marinomonas pollencensis strain CECT 7375 is a rod-shaped, aerobic bacterium that thrives in environments rich in oxygen. This strain is part of the Marinomonas genus, which is known for its marine habitat associations, although specific ecological contexts for CECT 7375 are not explicitly defined in the provided data. The rod shape of this microbe suggests adaptations that may facilitate motility and nutrient acquisition in its aquatic environment, characteristics often found in marine bacteria.↵↵As an aerobic organism, Marinomonas pollencensis strain CECT 7375 relies on oxygen for its metabolic processes, which may include the oxidation of organic compounds to generate energy. This trait indicates a potential role in biogeochemical cycles in marine ecosystems, where oxygen levels can influence microbial community dynamics and nutrient cycling. The strain's aerobic nature could also imply interactions with other microbial populations that fulfill differing metabolic requirements, contributing to the overall diversity and functionality of microbial communities in marine environments.↵↵In summary, Marinomonas pollencensis strain CECT 7375 exemplifies the adaptations of marine bacteria to oxygen-rich environments, potentially playing a significant role in marine nutrient cycling and ecosystem dynamics. Further study could elucidate its specific ecological functions and interactions within its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas pollencensis rod aerobic 491954 QUNG00000000.1 Bac0019384 Tenacibaculum gallaicum strain DSM 18841 "Tenacibaculum gallaicum strain DSM 18841 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal temperature of 29.0°C. This strain belongs to the genus Tenacibaculum, which is known for its presence in marine environments. The Gram-negative nature of T. gallaicum indicates a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. ↵↵The aerobic requirement suggests that this organism relies on oxygen for its metabolic processes, which may influence its ecological niche, particularly in oxygen-rich aquatic habitats. The optimal growth temperature of 29.0°C indicates that T. gallaicum may be well-suited to thrive in temperate marine conditions, possibly influencing its distribution in coastal environments. ↵↵Understanding the physiological traits of Tenacibaculum gallaicum strain DSM 18841 contributes to the broader knowledge of microbial diversity and adaptation in marine ecosystems. Its specific temperature and oxygen preferences could suggest potential roles in nutrient cycling and interactions with other marine microorganisms, further underlining the importance of studying such strains to elucidate their ecological functions." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum gallaicum Gram-negative rod motile aerobic 29 mesophilic 561505 QUNS00000000.1 Bac0019385 Methylovirgula sp. 4M-Z18 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Beijerinckiaceae Methylovirgula Methylovirgula sp. 4M-Z18 2293567 QUOY00000000.1 Bac0019386 Bacillus sp. ALD Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. ALD 2293318 QUQP00000000.1 Bac0019387 Bacillus sp. dmp5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. dmp5 2293328 QUQZ00000000.1 Bac0019388 Actinomadura logoneensis strain NEAU-G17 C4677 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura logoneensis 2293572 QURH00000000.1 Bac0019389 Fulvimarina endophytica strain 85 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Fulvimarina Fulvimarina endophytica 2293836 QURL00000000.1 Bac0019390 Mesorhizobium denitrificans strain LA-28 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium denitrificans 2294114 QURN00000000.1 Bac0019391 Comamonas testosteroni strain SWCO2 "Comamonas testosteroni strain SWCO2 is a Gram-negative, nonsporulating rod-shaped bacterium that thrives in aerobic environments. This strain is part of the diverse genus Comamonas, which is known for its metabolic versatility and ability to inhabit a range of ecological niches. The aerobic nature of strain SWCO2 suggests that it relies on oxygen for its metabolic processes, which may influence its distribution across various habitats.↵↵As a member of the Comamonadaceae family, C. testosteroni has been recognized for its capacity to degrade a variety of organic compounds, potentially making it significant in bioremediation contexts. Its ability to adapt to multiple habitats indicates that it may play diverse roles in different environments, such as soil, water, and possibly in association with plant roots.↵↵The nonsporulating characteristic of strain SWCO2 implies a reliance on favorable environmental conditions for survival and proliferation, as it does not possess the ability to form spores as a survival mechanism against adverse conditions. This trait may limit its resilience in extreme environments compared to sporulating bacteria.↵↵Understanding the environmental roles and metabolic capabilities of Comamonas testosteroni strain SWCO2 may provide insights into its contributions to nutrient cycling and organic matter decomposition in ecosystems where it is present. Further research could elucidate the specific pathways it utilizes, enhancing our knowledge of microbial ecology and its applications in environmental biotechnology." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas testosteroni Negative Rod No 1 2 Aerobe Mesophilic Multiple Free living Nonsporulating 285 QURR00000000.1 Bac0019392 Campylobacter hepaticus strain 54L "Campylobacter hepaticus strain 54L is a Gram-negative bacterium characterized by its unique morphology and physiological traits. As a member of the Campylobacter genus, this strain exhibits the typical helical shape associated with many of its relatives, which contributes to its motility and ecological adaptability. While specific biochemical characteristics and growth conditions for strain 54L have not been detailed, members of this genus are generally known to thrive in microaerophilic environments, indicating that strain 54L may similarly require reduced oxygen levels for optimal growth.↵↵The Gram-negative nature of Campylobacter hepaticus strain 54L suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, which can play a role in its interaction with the environment and host organisms. This structural feature is commonly associated with various physiological responses, such as resistance to certain antibiotics and the ability to evade host immune responses.↵↵Given the known traits of Campylobacter species, it can be inferred that strain 54L may play a role in the microbiota of its ecological niche, potentially influencing the dynamics of microbial communities. Understanding the specific ecological functions and interactions of Campylobacter hepaticus strain 54L could provide insights into its contributions to nutrient cycling or its role in host-associated microbiomes, emphasizing the importance of this microbe in its natural habitat." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hepaticus Gram-negative 1813019 QURW00000000.1 Bac0019393 Anaerofustis stercorihominis strain AM25-6 "Anaerofustis stercorihominis strain AM25-6 is a Gram-positive, strictly anaerobic bacterium. This strain is notable for its adaptation to environments devoid of oxygen, which is characteristic of certain gastrointestinal microbiota. As an anaerobe, Anaerofustis stercorihominis strain AM25-6 likely plays a role in fermentative processes, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are essential for host health and maintaining gut homeostasis.↵↵The Gram-positive nature of this strain suggests the presence of a thick peptidoglycan layer in its cell wall, which may provide structural integrity and resistance to certain environmental stresses typically faced in anaerobic habitats. This trait also hints at the potential for utilizing various substrates for energy, as many Gram-positive anaerobes are known to possess diverse metabolic capabilities.↵↵In summary, Anaerofustis stercorihominis strain AM25-6 exemplifies the characteristics of a specialized anaerobic bacterium within the human gut microbiome. Its metabolic activities likely contribute not only to the digestion of dietary components but also to the modulation of the host's immune response and overall microbial balance in the intestinal environment. Further investigation into its specific metabolic pathways could reveal more about its functional roles and importance in gastrointestinal health." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Anaerofustis Anaerofustis stercorihominis Positive Anaerobe 214853 QUSM00000000.1 Bac0019394 Maribacter algicola strain PoM-212 POM-212_7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter algicola 2498892 QUSX00000000.1 Bac0019395 Acinetobacter sp. SWAC5 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. SWAC5 2293835 QUWR00000000.1 Bac0019396 Wenzhouxiangella sp. 15181 179 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Wenzhouxiangellaceae Wenzhouxiangella Wenzhouxiangella sp. 15181 2301224 QUZL00000000.1 Bac0019397 Xanthomonas campestris pv. campestris strain WHRI8960 "Xanthomonas campestris pv. campestris strain WHRI8960 is a Gram-negative, rod-shaped bacterium that thrives in host-associated habitats, exhibiting optimal growth at a temperature of 25.0°C. This strain is an aerobic organism, requiring oxygen for metabolic processes. ↵↵As a member of the Xanthomonadaceae family, X. campestris pv. campestris is known for its association with various plants, where it can play a significant role in plant health and disease dynamics. Its rod-shaped morphology and aerobic nature suggest a specialized adaptation to environments where oxygen is readily available, which aligns with its ecological niche. ↵↵The specific growth temperature of 25.0°C indicates that this strain may be particularly suited for temperate climates, where many of its plant hosts are found. This temperature preference could influence its distribution and interactions within agricultural ecosystems, especially in regions where host plants are cultivated.↵↵Understanding the growth characteristics and habitat preferences of Xanthomonas campestris pv. campestris strain WHRI8960 can provide insights into its role in the plant microbiome, potentially influencing both microbial community structure and plant health outcomes. Its ecological adaptability underscores the importance of further studies on its interactions with host plants and the surrounding microorganisms in the environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas campestris Negative Rod Yes 1 2 Aerobe 25 Mesophilic HostAssociated Free living 340 QUZS00000000.1 Bac0019398 Citrobacter gillenii strain MBT-C3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter gillenii aerobic 67828 QVEK00000000.1 Bac0019399 Streptococcus pasteurianus strain AM21-19 "Streptococcus pasteurianus strain AM21-19 is a Gram-positive, cocci-shaped bacterium that exhibits a chemoheterotrophic mode of nutrition, utilizing organic compounds as energy sources. This strain does not form spores, which is consistent with the general characteristics of the Streptococcus genus. ↵↵As a member of the Streptococcus genus, S. pasteurianus strain AM21-19 is likely to be involved in various biochemical processes, potentially including fermentation, as many related species are known for their metabolic versatility in diverse environments. The nonsporulating nature of this strain suggests that it may rely on stable environmental conditions for survival, as it does not possess the ability to withstand extreme stressors that typically trigger sporulation in other bacterial taxa.↵↵The chemoheterotrophic energy source indicates that S. pasteurianus strain AM21-19 likely plays a role in organic matter decomposition and nutrient cycling within its habitat. This could be particularly significant in ecosystems where organic substrates are abundant, potentially influencing microbial community dynamics and nutrient availability. Overall, the traits of S. pasteurianus strain AM21-19 highlight its potential ecological roles in organic matter transformation and its adaptability to specific ecological niches within its environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pasteurianus Positive Cocci No 1 Chemoheterotroph Nonsporulating 197614 QVEM00000000.1 Bac0019400 Faecalibacterium prausnitzii strain AF36-11AT "Faecalibacterium prausnitzii strain AF36-11AT is a Gram-positive, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C and exhibits a chemoheterotrophic mode of energy acquisition. This strain is anaerobic, indicating that it requires an oxygen-free environment for growth and metabolism. ↵↵F. prausnitzii is known to inhabit multiple ecological niches, often associated with the gastrointestinal tract of various hosts. Its presence in the gut microbiota is significant, as this bacterium plays a role in maintaining gut health and metabolic balance. By metabolizing complex carbohydrates, it contributes to the production of short-chain fatty acids, which are essential for colonic health and have anti-inflammatory properties.↵↵The metabolic capabilities of F. prausnitzii strain AF36-11AT, particularly its ability to thrive in anaerobic conditions and utilize a range of organic compounds for energy, underscore its potential importance in diverse microbiomes. This strain may serve as a crucial indicator of microbial community stability and health, which could have implications for understanding microbial dysbiosis and its effects on host well-being." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 QVEQ00000000.1 Bac0019401 Faecalibacterium prausnitzii strain AF31-14AC "Faecalibacterium prausnitzii strain AF31-14AC is a Gram-positive, nonsporulating rod that thrives as an anaerobic chemoheterotroph, with an optimal growth temperature of 37.0°C. This strain is part of a diverse group of microorganisms, commonly found in various habitats, including the gastrointestinal tracts of humans and animals. Its anaerobic nature suggests that it plays a role in environments where oxygen is limited, contributing to the complex microbial communities in these ecosystems.↵↵As a chemoheterotroph, F. prausnitzii strain AF31-14AC likely utilizes organic compounds as an energy source, which may facilitate interactions with other microbes and influence the overall metabolic processes within its habitat. The presence of this strain in the gut microbiome has been associated with beneficial effects on host health, potentially contributing to the maintenance of intestinal homeostasis and the modulation of immune responses.↵↵The ecological significance of F. prausnitzii strain AF31-14AC lies in its ability to thrive in anaerobic environments, where it may help stabilize microbial community structures and enhance the degradation of complex carbohydrates. This role could be particularly important in promoting the fermentation of dietary fibers, which not only supports its own growth but also benefits the host organism through the production of short-chain fatty acids. Thus, this strain exemplifies the intricate relationships within microbial ecosystems and their potential impact on host health." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 QVES00000000.1 Bac0019402 Anaerococcus nagyae strain OF01-3 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus nagyae 1755241 QVEU00000000.1 Bac0019403 Faecalibacterium prausnitzii strain AF29-11BH "Faecalibacterium prausnitzii strain AF29-11BH is a Gram-positive, nonsporulating rod-shaped bacterium that thrives optimally at 37.0°C. As a chemoheterotroph, it derives energy from organic compounds, indicating its reliance on a diverse range of substrates for growth. This strain is anaerobic, reflecting its adaptation to environments devoid of oxygen, which is typical for many members of the human gut microbiota. ↵↵F. prausnitzii is noted for its presence in multiple habitats, particularly within the gastrointestinal tracts of various hosts. Its role in the gut microbiome has been associated with maintaining intestinal health, though specific ecological functions of strain AF29-11BH are not delineated in the available data. The presence of this strain in different ecological niches suggests a level of versatility and adaptability, potentially contributing to its survival in fluctuating environmental conditions.↵↵Further studies may elucidate the metabolic pathways utilized by this strain in its natural habitat, as well as its potential interactions with other microbial community members. Understanding the ecological dynamics of F. prausnitzii strain AF29-11BH may provide insights into its contributions to gut health and its potential implications in broader ecological contexts." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 QVEW00000000.1 Bac0019404 Micromonospora craniellae strain LHW63014 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora craniellae 2294034 QVFU00000000.1 Bac0019405 Leptolyngbya iicbica LK Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya iicbica 2294035 QVFV00000000.1 Bac0019406 Subdoligranulum sp. AM23-21AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Subdoligranulum sp. AM23-21AC 2302961 QVGK00000000.1 Bac0019407 Subdoligranulum sp. AM16-9 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Subdoligranulum sp. AM16-9 2302960 QVGL00000000.1 Bac0019408 Coprococcus sp. AF38-1 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. AF38-1 2302943 QVGO00000000.1 Bac0019409 Subdoligranulum sp. OF01-18 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Subdoligranulum sp. OF01-18 2302962 QVGP00000000.1 Bac0019410 Coprococcus sp. AF27-8 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. AF27-8 2302946 QVGR00000000.1 Bac0019411 Erysipelotrichaceae bacterium AF15-26LB Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelotrichaceae bacterium AF15-26LB 2302975 QVGW00000000.1 Bac0019412 Lachnospiraceae bacterium AM40-2BH Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium AM40-2BH 2302965 QVHA00000000.1 Bac0019413 Coprococcus sp. AM25-4LB Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Coprococcus Coprococcus sp. AM25-4LB 2302945 QVHD00000000.1 Bac0019414 Lachnospiraceae bacterium AM25-39 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium AM25-39 2302972 QVHF00000000.1 Bac0019415 Lachnospiraceae bacterium TM07-2AC Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium TM07-2AC 2302966 QVHG00000000.1 Bac0019416 Clostridiales bacterium TF09-2AC Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium TF09-2AC 2302989 QVHJ00000000.1 Bac0019417 Hungatella hathewayi strain AF31-1 "Hungatella hathewayi strain AF31-1 is a Gram-positive, rod-shaped, anaerobic bacterium characterized by its ability to sporulate. This organism is a chemoheterotroph, deriving its energy from organic compounds, and thrives optimally at a temperature of 37.0°C, which aligns with the typical thermophilic conditions found in the intestinal microflora of animals.↵↵As a member of the gut microbiota, H. hathewayi strain AF31-1 plays a potential role in the complex ecosystem of the gastrointestinal tract, where it may contribute to the degradation of polysaccharides and other organic substrates. The ability to sporulate suggests a mechanism for survival in fluctuating environmental conditions within the gut, possibly facilitating its persistence during periods of stress, such as changes in diet or antibiotic exposure.↵↵Further investigation into the metabolic pathways and interactions of this strain within the intestinal environment could provide insights into its functional contributions to gut health and overall host metabolism. Thus, Hungatella hathewayi strain AF31-1 exemplifies the intricate balance of microbial life in the digestive systems of animals, highlighting its importance in maintaining gut homeostasis and nutrient cycling." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Hungatella Hungatella hathewayi Positive Rod No 1 Anaerobic 37 Chemoheterotroph Animal intestinal microflora Sporulating 154046 QVHZ00000000.1 Bac0019418 Duganella sp. BJB475 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella sp. BJB475 2233914 QVIP00000000.1 Bac0019419 Haemophilus influenzae strain P661-4460 "Haemophilus influenzae strain P661-4460 is a Gram-negative, rod-shaped bacterium that optimally thrives at 35.0°C and exhibits both aerobic and facultative anaerobic growth capabilities. This strain is categorized as host-associated, indicating a close relationship with its host organism, which may influence its metabolic activities and ecological interactions.↵↵The Gram-negative classification of H. influenzae suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, characteristics that may contribute to its survival in diverse environments, including those within a host. The rod shape is typical for this genus and can play a role in its motility and colonization efficiency in host tissues.↵↵Given its facultative anaerobic nature, strain P661-4460 possesses metabolic flexibility, allowing it to adapt to varying oxygen levels within the host environment. This trait may facilitate its survival and proliferation in different niches, potentially leading to varying physiological responses based on the host's immune status and tissue microenvironment.↵↵Overall, the adaptability of Haemophilus influenzae strain P661-4460 to both aerobic and anaerobic conditions within host-associated habitats underscores its potential role in microbial communities and interactions within the host organism. Such traits may also influence its ecological significance in the context of host-microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae Negative Rod No 1 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 727 QVIT00000000.2 Bac0019420 Hydrogenophaga borbori strain LA-38 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Hydrogenophaga Hydrogenophaga borbori 2294117 QVLS00000000.1 Bac0019421 Hymenobacter sp. CCM 8763 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter lapidiphilus 2608003 QVLT00000000.1 Bac0019422 Eisenbergiella massiliensis strain TF05-5AC Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Eisenbergiella Eisenbergiella massiliensis 1720294 QVLV00000000.1 Bac0019423 Anaerotruncus colihominis strain TF05-12AC Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus colihominis caeca; feces; rectal mucosa 169435 QVME00000000.1 Bac0019424 Rhodobacteraceae bacterium 63075 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium 63075 2301226 QVMW00000000.1 Bac0019425 Klebsiella michiganensis strain KMISG1 "Klebsiella michiganensis strain KMISG1 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe that thrives optimally at 37.0°C. This strain demonstrates a chemoheterotrophic metabolism, utilizing organic compounds as both a carbon and energy source. The adaptability of K. michiganensis strain KMISG1 to various habitats underscores its ecological versatility, allowing it to inhabit diverse environments, although specific ecological niches have not been detailed. ↵↵Facultative anaerobes like K. michiganensis strain KMISG1 can survive in both aerobic and anaerobic conditions, which may confer a competitive advantage in fluctuating environments where oxygen availability varies. This adaptability, combined with its metabolic capabilities, suggests that K. michiganensis strain KMISG1 could be involved in various biochemical cycles, potentially contributing to the degradation of organic matter in its habitats. Further investigations into its ecological roles could provide valuable insights into its interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella michiganensis Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1134687 QVNS00000000.1 Bac0019426 Clostridium botulinum strain CDC66008 "Clostridium botulinum strain CDC66008 is a Gram-positive, rod-shaped bacterium that typically exists in pairs, singles, or chains. This strain is characterized as a chemoorganotroph, indicating its reliance on organic compounds for energy. It thrives optimally at 37.0°C, suggesting a preference for mesophilic environments, which aligns with its habitat that spans multiple ecological niches, likely including soil and anaerobic environments such as sediments and decaying organic matter. ↵↵As an anaerobe, C. botulinum strain CDC66008 requires environments devoid of oxygen for growth, which is a common trait among Clostridia, allowing them to occupy unique ecological niches that are inhospitable to many other microorganisms. The ability of this strain to adapt to various habitats reinforces the ecological versatility of the Clostridium genus. Understanding the specific conditions and environments that support the growth of C. botulinum strain CDC66008 can provide insights into its role within microbial communities and its potential interactions with other organisms in anaerobic ecosystems." Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Pairs - Singles - Chains 1491 QVOC00000000.1 Bac0019427 Serratia marcescens strain KCTC 42172 36 "Serratia marcescens strain KCTC 42172 36 is a Gram-negative, non-sporulating rod-shaped bacterium that exhibits facultative anaerobic growth and thrives optimally at a temperature of 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, allowing it to inhabit diverse environments where organic matter is available. The facultative anaerobic nature of this organism enables it to utilize both aerobic respiration and fermentation pathways, providing versatility in fluctuating oxygen conditions.↵↵This strain's ability to adapt to multiple habitats suggests a robust ecological presence, potentially allowing it to play a role in various biogeochemical cycles. Its metabolic flexibility may also enable it to survive in both nutrient-rich and nutrient-limited environments, contributing to its persistence and adaptability. The combination of its growth characteristics and ecological versatility highlights the importance of Serratia marcescens strain KCTC 42172 36 in microbial community dynamics, where it may interact with other microorganisms and influence nutrient cycling. Further studies could elucidate its specific ecological roles and interactions within different microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 QVOI00000000.1 Bac0019428 Arenibacter sp. P308M17 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Arenibacter Arenibacter sp. P308M17 2303391 QVON00000000.1 Bac0019429 Cognatiluteimonas weifangensis strain WF-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Cognatiluteimonas Cognatiluteimonas weifangensis 2303539 QVPD00000000.1 Bac0019430 Acinetobacter sp. S131434 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. S131434 2302372 QVQG00000000.1 Bac0019431 Peribacillus glennii strain V44-8 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus glennii 2303991 QVTD00000000.1 Bac0019432 Achromobacter xylosoxidans strain GD003A "Achromobacter xylosoxidans strain GD003A is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolic requirements and association with host environments. This strain is part of the Achromobacter genus, which is known for its diverse ecological niches, particularly in association with various hosts. The aerobic nature of A. xylosoxidans indicates its reliance on oxygen for growth and energy production, aligning it with other members of the genus that thrive in oxygen-rich environments.↵↵The host-associated habitat of strain GD003A suggests its potential role in symbiotic or commensal relationships, although specific interactions with its host remain to be elucidated. The adaptation of this bacterium to host-associated environments may confer advantages in nutrient acquisition and ecological resilience, allowing it to occupy specific niches that are unavailable to strictly environmental bacteria.↵↵Given the bacterium's aerobic metabolism and host association, further studies could explore its potential roles in microbial communities within host organisms, contributing to our understanding of microbial ecology and the dynamics of host-microbe interactions. This insight emphasizes the importance of further research into the ecological functions of A. xylosoxidans strain GD003A, particularly in relation to its interactions with the host and its impact on the host's microbiome." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter xylosoxidans Negative Rod Yes 1 1 Aerobe HostAssociated Free living 85698 QVXO00000000.1 Bac0019433 Leucobacter sp. wl10 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter sp. wl10 2304677 QWBV00000000.1 Bac0019434 Mucilaginibacter terrenus strain ZH6 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter terrenus 2482727 QWDE00000000.1 Bac0019435 Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 "Clavibacter michiganensis subsp. insidiosus strain CFBP 6488 is a Gram-positive, rod-shaped bacterium that typically exhibits a cell arrangement in pairs or as single cells. This strain thrives optimally at a temperature of 25.0°C and requires aerobic conditions for growth. ↵↵The habitat of C. michiganensis subsp. insidiosus is diverse, suggesting a level of ecological versatility that may allow it to occupy various niches within its environment. As an aerobe, this strain relies on oxygen for its metabolic processes, which is indicative of its potential roles in soil or plant-associated environments where oxygen availability is sufficient. ↵↵In summary, the unique combination of its Gram-positive nature, rod shape, and specific growth requirements may contribute to its ecological interactions, particularly in aerobic environments where it could influence microbial community dynamics or participate in nutrient cycling. Further studies could elucidate its specific ecological functions and interactions within its habitats." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter michiganensis Positive Rod No 1 1 Aerobe 25 Mesophilic Multiple Free living Pairs - Singles 33014 QWEA00000000.1 Bac0019436 Clavibacter nebraskensis strain CFBP 7577 CFBP75771273 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter nebraskensis 31963 QWED00000000.1 Bac0019437 Neobacillus notoginsengisoli strain JCM 30743 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Neobacillus Neobacillus notoginsengisoli 1578198 QWEG00000000.1 Bac0019438 Acidipila sp. EB88 Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidipila Acidipila sp. EB88 2305226 QWEV00000000.1 Bac0019439 Pseudotabrizicola alkalilacus strain DJC Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudotabrizicola Pseudotabrizicola alkalilacus 2305252 QWEY00000000.1 Bac0019440 Pseudomonas sp. 91RF Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. 91RF 2292261 QWFC00000000.1 Bac0019441 Henriciella barbarensis strain CCUG66934 CCUG66934_S15 "Henriciella barbarensis strain CCUG66934, designated as CCUG66934_S15, is a Gram-negative bacterium that exhibits aerobic metabolism and relies on organic compounds as its energy source, classifying it as an organotrophic chemotroph. This strain thrives optimally at a temperature of 29.0°C, suggesting its potential adaptation to moderate environmental conditions.↵↵As a Gram-negative organism, Henriciella barbarensis possesses a characteristic outer membrane containing lipopolysaccharides, which may play a role in its interactions with the surrounding environment. The aerobic nature of this strain indicates that it requires molecular oxygen for growth and energy production, highlighting its metabolic versatility in utilizing organic substrates under aerobic conditions.↵↵Given its specific temperature preference and metabolic capabilities, Henriciella barbarensis strain CCUG66934 may be well-suited to niche environments where organic matter is abundant and oxygen levels are sufficient. This could include habitats such as coastal marine sediments or other organic-rich aquatic systems. Further investigation into the ecological roles of this strain could reveal its contributions to organic matter decomposition and nutrient cycling in such environments, underscoring its potential importance in maintaining ecosystem health and function." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomonadales Hyphomonadaceae Henriciella Henriciella barbarensis Gram-negative motile aerobic 29 organotroph; chemotroph mesophilic 86342 QWGB00000000.1 Bac0019442 Clostridiaceae bacterium AF02-42 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium AF02-42 2305246 QWGK00000000.1 Bac0019443 Clostridiaceae bacterium TF01-6 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridiaceae bacterium TF01-6 2305245 QWGM00000000.1 Bac0019444 Lachnospiraceae bacterium OF11-28 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnospiraceae bacterium OF11-28 2305244 QWGN00000000.1 Bac0019445 Desulfotomaculum sp. OF05-3 Bacillati Bacillota Clostridia Eubacteriales Desulfotomaculaceae Desulfotomaculum Desulfotomaculum sp. OF05-3 2305243 QWGO00000000.1 Bac0019446 Clavibacter phaseoli strain CFBP 8217 CFBP82171002 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter phaseoli 1734031 QWGS00000000.1 Bac0019447 Chryseobacterium nematophagum strain JUb129 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium nematophagum 2305228 QWIU00000000.1 Bac0019448 Chryseobacterium nematophagum strain JUb275 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium nematophagum 2305228 QWIV00000000.1 Bac0019449 Cellulomonas rhizosphaerae strain NEAU-TCZ24 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas rhizosphaerae 2293719 QWKP00000000.1 Bac0019450 Meiothermus taiwanensis strain JCM 15151 Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus taiwanensis 172827 QWKX00000000.1 Bac0019451 Meiothermus granaticius NBRC 107808 strain AF-68 Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus granaticius 1227551 QWLB00000000.1 Bac0019452 Pseudomonas monteilii strain BCN3 "Pseudomonas monteilii strain BCN3 is a Gram-negative, rod-shaped bacterium that exhibits chemoheterotrophic metabolism and requires oxygen for growth, classifying it as an aerobe. This strain does not form spores, which is characteristic of many members of its genus. Pseudomonas monteilii is primarily found in soil environments, where it likely plays a role in nutrient cycling and organic matter decomposition.↵↵As an aerobe, Pseudomonas monteilii strain BCN3 utilizes organic compounds as energy sources, contributing to its ecological niche in soil ecosystems. The ability to thrive in various soil conditions may enhance its adaptability and survival, allowing it to participate in complex microbial communities. This adaptability underscores the importance of such bacteria in maintaining soil health and fertility through their metabolic activities.↵↵Understanding the specific traits and capabilities of Pseudomonas monteilii strain BCN3 can provide insights into its potential applications in bioremediation and soil management practices, highlighting the broader ecological significance of microbial diversity in terrestrial environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monteilii Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 76759 QWLL00000000.1 Bac0019453 Dermacoccus abyssi strain MT1.1 "Dermacoccus abyssi strain MT1.1 is a Gram-positive, rod-shaped bacterium notable for its ability to form spores, which suggests a potential for resilience in various environmental conditions. This strain thrives optimally at a temperature of 29.0°C, indicating a preference for moderately warm habitats, potentially reflective of its natural environments. Additionally, D. abyssi strain MT1.1 is classified as aerobic or microaerophilic, underscoring its requirement for oxygen to support its metabolic processes.↵↵The spore-forming capability of D. abyssi strain MT1.1 may confer advantages in surviving unfavorable conditions, allowing it to endure periods of nutrient scarcity or other stressors. The combination of its morphological characteristics, optimal growth conditions, and oxygen requirements suggests that this microbe may inhabit niche environments where oxygen levels fluctuate, such as in soil or sediment layers where organic matter decomposition occurs. ↵↵Understanding the ecological role of Dermacoccus abyssi strain MT1.1 could provide insights into its interactions within microbial communities and its contributions to nutrient cycling in its habitat. Further research may elucidate its specific ecological functions and potential applications in biotechnology or environmental management." Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Dermacoccus Dermacoccus abyssi Gram-positive rod non-motile aerobic / microaerophile 29 mesophilic spore-forming 322596 QWLM00000000.1 Bac0019454 Shigella boydii strain DMB SH134 "Shigella boydii strain DMB SH134 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, aligning with the physiological temperature of the human body, which suggests it is well-adapted to host-associated environments. As a chemoorganotroph, S. boydii strain DMB SH134 derives its energy from organic compounds, further indicating its reliance on host-derived nutrients for growth and metabolism. ↵↵Being a facultative anaerobe, this strain is capable of surviving in both aerobic and anaerobic conditions, allowing it to inhabit various niches within the host environment. Its ability to adapt to fluctuating oxygen levels may enhance its survival during infection, potentially contributing to its persistence in host tissues. ↵↵The ecological implications of S. boydii strain DMB SH134's traits suggest a complex interaction with the host microbiome, where it may compete with or influence other microbial populations. Understanding the metabolic capabilities and environmental adaptability of this strain could provide insights into its role within host-associated ecosystems and its potential interactions with other gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella boydii Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 621 QWSH00000000.1 Bac0019455 Shigella boydii strain DMB SH20032 "Shigella boydii strain DMB SH20032 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0 °C, which aligns with the physiological temperature of its host-associated habitat. As a chemoorganotroph, S. boydii strain DMB SH20032 derives energy from organic compounds, allowing it to exploit various nutrient sources available within its host environment. Furthermore, its classification as a facultative anaerobe indicates that it can grow in both aerobic and anaerobic conditions, providing it with metabolic flexibility that may contribute to its adaptability in diverse ecological niches.↵↵Understanding the physiological traits of S. boydii strain DMB SH20032 is crucial for elucidating its role within the host environment. The combination of its temperature preference and energy acquisition strategies suggests that it may participate in complex microbial interactions within the gastrointestinal tract of its host, potentially influencing both microbial community structure and host health. This adaptability may also reflect the evolutionary pressures faced by this strain, highlighting its significance in the study of host-associated microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella boydii Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 621 QWSV00000000.1 Bac0019456 Lactiplantibacillus garii strain FI11369 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus garii 2306423 QWZQ00000000.1 Bac0019457 Nakamurella silvestris strain DSM 102309 "Nakamurella silvestris strain DSM 102309 is a Gram-positive, rod-shaped bacterium characterized by its non-spore-forming nature and its capacity as an organotrophic chemotroph. The optimal growth temperature for this strain is 25.0°C, indicating a preference for mesophilic conditions. As an organotroph, N. silvestris utilizes organic compounds as its primary energy source, which suggests its potential involvement in the decomposition of organic matter in its native habitat. ↵↵The classification of N. silvestris within the broader context of microbial ecology highlights its role in nutrient cycling, particularly in environments where organic substrates are abundant. By utilizing organic materials for energy, this strain may contribute to the microbial community's overall metabolic diversity and functionality. Furthermore, the non-spore-forming characteristic of N. silvestris implies that it may rely on environmental stability for survival, potentially influencing its ecological niche and interactions with other microorganisms. As such, this bacterium could play a significant role in the dynamics of microbial communities, particularly in the decomposition processes within soil or similar environments where organic matter is prevalent." Bacillati Actinomycetota Actinomycetes Nakamurellales Nakamurellaceae Nakamurella Nakamurella silvestris Gram-positive rod non-motile 25 organotroph; chemotroph mesophilic non-spore-forming 1645681 QXCQ00000000.1 Bac0019458 Stenotrophomonas sp. AG209 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. AG209 2183909 QXDB00000000.1 Bac0019459 Dichotomicrobium thermohalophilum strain DSM 5002 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Hyphomicrobiaceae Dichotomicrobium Dichotomicrobium thermohalophilum 933063 QXDF00000000.1 Bac0019460 Clostridium chromiireducens strain C1 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium chromiireducens 225345 QXDJ00000000.1 Bac0019461 Calidithermus terrae strain DSM 26712 Thermotogati Deinococcota Deinococci Thermales Thermaceae Calidithermus Calidithermus terrae 1408545 QXDL00000000.1 Bac0019462 Escherichia coli strain PS00209 "Escherichia coli strain PS00209 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C and is classified as a facultative anaerobe, allowing it to adapt to various oxygen levels within its environment. E. coli strains, including PS00209, are commonly associated with host environments, indicating a potential relationship with a specific host organism or ecosystem.↵↵The ability of E. coli PS00209 to grow in both aerobic and anaerobic conditions suggests a metabolic versatility that could enable it to colonize diverse niches within its host's microbiome. Understanding the ecological role of this strain can provide insights into its interactions with other microbial communities and its potential contributions to the host's health. ↵↵Given its host-associated habitat, E. coli PS00209 may play a role in nutrient cycling or in the modulation of the host's immune responses, although further studies would be necessary to elucidate these interactions. Overall, the traits of this strain highlight its adaptability and potential significance within its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QXDN00000000.1 Bac0019463 Vibrio cholerae strain CHNf1 "Vibrio cholerae strain CHNf1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, V. cholerae strain CHNf1 relies on organic compounds as its energy source, which supports its adaptability to various habitats.↵↵The optimal growth temperature for this strain is approximately 20°C, indicating a preference for cooler environments, which may influence its distribution and ecological interactions. Given its classification within the Vibrio genus, this strain may inhabit diverse aquatic ecosystems, including brackish and marine environments, where it can coexist with other microorganisms.↵↵The ability of V. cholerae strain CHNf1 to adapt to fluctuating oxygen levels enhances its ecological versatility, allowing it to exploit a range of ecological niches. This trait may facilitate its survival in environments with varying nutrient availability, where it can play a role in nutrient cycling and microbial community dynamics. Understanding the specific habitat preferences and metabolic capabilities of V. cholerae strain CHNf1 may provide insights into its ecological roles and interactions within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXEB00000000.1 Bac0019464 Micromonospora radicis strain AZ1-13 83 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora radicis 1894971 QXEC00000000.1 Bac0019465 Flagellimonas lutimaris strain KCTC 22173 402 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas lutimaris 475082 QXFH00000000.1 Bac0019466 Flagellimonas pelagia strain 72 248 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas pelagia 2306998 QXFI00000000.1 Bac0019467 Bifidobacterium dolichotidis strain 2036B Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dolichotidis 2306976 QXGM00000000.1 Bac0019468 Escherichia coli strain S308 "Escherichia coli strain S308 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli strain S308 is likely to be found in the gastrointestinal tracts of various organisms, where it may play a role in nutrient metabolism and gut microbiota balance. The ability to exist in pairs or as single cells suggests a degree of flexibility in its growth and reproduction strategies, potentially allowing it to adapt to varying environmental conditions within its host.↵↵Understanding the characteristics of E. coli strain S308 can provide insights into its potential interactions within the host microbiome. The facultative anaerobic nature of this strain may enable it to occupy diverse niches in the gut, where it can compete with other microorganisms for resources while also contributing to the metabolic processes essential for host health. Further research into the specific interactions of this strain within its host environment could reveal important information about its role in microbial community dynamics and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QXHA00000000.1 Bac0019469 Colwellia sp. RSH04 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Colwellia Colwellia sp. RSH04 2305464 QXIO00000000.1 Bac0019470 Bacillus salacetis strain SKP7-4 109 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus salacetis 2315464 QXIR00000000.1 Bac0019471 Corynebacterium falsenii strain FN1-14 39 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium falsenii 108486 QXJK00000000.1 Bac0019472 Cohnella faecalis strain K2E09-144 Segkk64 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella faecalis 2315694 QXJM00000000.1 Bac0019473 Rodentibacter pneumotropicus strain 602_16 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXNE00000000.1 Bac0019474 Rodentibacter pneumotropicus strain 691_11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXNJ00000000.1 Bac0019475 Rodentibacter pneumotropicus strain FD987 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter pneumotropicus 758 QXNK00000000.1 Bac0019476 Escherichia coli strain HR135 "Escherichia coli strain HR135 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its capability to thrive in both aerobic and anaerobic environments. It exhibits optimal growth at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat.↵↵As a member of the E. coli species, strain HR135 is likely to inhabit the gastrointestinal tract of warm-blooded animals, where it may play a role in various ecological interactions. The ability to grow in the presence or absence of oxygen suggests that this strain can adapt to diverse microenvironments within its host, potentially influencing its metabolic processes and interactions with the host's microbiome.↵↵In summary, the adaptability of Escherichia coli strain HR135 to varying oxygen levels, coupled with its optimal temperature for growth, underscores its potential significance in the microbial ecology of the gastrointestinal tract, where it may contribute to nutrient cycling and host health. Further investigation into its specific interactions within host-associated environments could provide insights into its ecological roles and biological functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QXNW00000000.1 Bac0019477 Atopobacter sp. AH10 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Atopobacter Atopobacter sp. AH10 2315861 QXPZ00000000.1 Bac0019478 Staphylococcus gallinarum strain SNUC 1388 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus gallinarum beetle gut 1293 QXRZ00000000.1 Bac0019479 Staphylococcus cohnii strain SNUC 4556 "Staphylococcus cohnii strain SNUC 4556 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism and is classified as a chemoheterotroph, utilizing organic compounds for energy. This strain is capable of thriving in diverse habitats, which suggests a versatile ecological adaptability that may enable it to colonize various environments, including human-associated niches. ↵↵As a member of the Staphylococcus genus, S. cohnii strain SNUC 4556 shares characteristics with other staphylococci, possessing a distinctive coccal morphology that is typical of this group. The facultative anaerobic nature of this strain allows it to grow in both the presence and absence of oxygen, which is advantageous for survival in fluctuating environmental conditions. ↵↵The ability of S. cohnii to utilize a range of organic substrates as energy sources may also indicate its potential role in nutrient cycling within its habitats. This adaptability to multiple environments, combined with its metabolic capabilities, underscores the ecological significance of S. cohnii strain SNUC 4556 in microbial communities where it may contribute to the breakdown of organic matter and the maintenance of ecosystem balance." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus cohnii Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 29382 QXSY00000000.1 Bac0019480 Sphingomonas edaphi strain DAC4 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas edaphi 2315689 QXTF00000000.1 Bac0019481 Amnibacterium setariae strain DD4a Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Amnibacterium Amnibacterium setariae 2306585 QXTG00000000.1 Bac0019482 Staphylococcus shinii strain SNUC 4554 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus shinii 2912228 QXUF00000000.1 Bac0019483 Staphylococcus xylosus strain SNUC 1349 "Staphylococcus xylosus strain SNUC 1349 is a Gram-positive, nonsporulating cocci that thrives as a chemoheterotroph, utilizing organic compounds as its energy source. This strain exhibits optimal growth at a temperature of 30.0°C and is classified as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments. ↵↵S. xylosus is known to inhabit various ecological niches, reflecting its adaptability to diverse habitats. This versatility allows the organism to exploit a range of substrates, thus playing a potentially significant role in microbial communities where organic matter decomposition occurs. The strain's facultative anaerobic nature suggests that it may contribute to metabolic processes in environments with fluctuating oxygen levels, making it a crucial player in ecosystems where oxygen availability varies. Such characteristics underscore the ecological importance of S. xylosus strain SNUC 1349, particularly in contributing to nutrient cycling and the maintenance of microbial diversity in its habitats." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus xylosus Positive Cocci No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1288 QXUI00000000.1 Bac0019484 Staphylococcus xylosus strain SNUC 102 "Staphylococcus xylosus strain SNUC 102 is a Gram-positive, nonsporulating coccal bacterium that exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds. The optimal growth temperature for S. xylosus strain SNUC 102 is 30.0°C, suggesting a preference for moderate temperatures, which is consistent with its presence in diverse habitats.↵↵The ability of S. xylosus strain SNUC 102 to adapt to various environments may contribute to its survival and functionality in different ecological niches, including those associated with animal and plant hosts. This versatility implies a potential role in biogeochemical cycles, as well as in the interactions with other microbial communities. The strain's facultative anaerobic nature also hints at an ability to engage in metabolic processes that could be beneficial in fluctuating oxygen conditions, which are common in many natural ecosystems.↵↵In summary, S. xylosus strain SNUC 102 illustrates the adaptability of certain cocci within the Staphylococcus genus, showcasing its potential significance in both ecological dynamics and biotechnological applications where organic substrates are available." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus xylosus Positive Cocci No 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1288 QXUL00000000.1 Bac0019485 Mammaliicoccus sciuri strain SNUC 174 "Mammaliicoccus sciuri strain SNUC 174 is a Gram-positive coccus that typically arranges itself in clusters and exhibits a facultative anaerobic metabolism, relying on chemoheterotrophic energy sources. This strain thrives optimally at a temperature of 37.0 °C, which suggests an adaptation to the warm-blooded mammalian host environment. Notably, Mammaliicoccus sciuri strain SNUC 174 is nonsporulating, indicating that it does not produce spores as a means of survival under adverse conditions.↵↵The habitat of this strain is primarily the epidermis of mammalian hosts, where it may play a role in the complex microbiota that resides on the skin. The presence of Mammaliicoccus sciuri in this niche could be indicative of its potential involvement in maintaining skin health or influencing host immune responses, although specific interactions remain to be elucidated. The clustering morphology may provide advantages in colonization and resilience against environmental stresses encountered on the host's skin surface.↵↵Overall, the ecological role of Mammaliicoccus sciuri strain SNUC 174 could extend beyond mere commensalism, possibly influencing skin microbiome dynamics and host interactions in a way that merits further investigation." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Mammaliicoccus Mammaliicoccus sciuri Positive Cocci No 1 Facultative Anaerobe 37 Chemoheterotroph Mesophilic Host Epidermis Clusters Nonsporulating 1296 QXVD00000000.1 Bac0019486 Staphylococcus nepalensis strain SNUC 4025 "Staphylococcus nepalensis strain SNUC 4025 is a Gram-positive, nonsporulating coccus that typically occurs as single cells. This bacterium is classified as a chemoheterotroph, indicating that it derives its energy from organic compounds, which is consistent with its versatile metabolic capabilities. S. nepalensis strain SNUC 4025 exhibits facultative anaerobic respiration, allowing it to thrive in both aerobic and anaerobic environments.↵↵The habitat of S. nepalensis strain SNUC 4025 is reported to be diverse, suggesting its adaptability to various ecological niches. This trait may facilitate its survival in fluctuating environmental conditions and underscores the potential for this microbe to engage in complex interactions within its habitat. Given its unique characteristics, S. nepalensis strain SNUC 4025 may play a role in the microbial communities in its various environments, contributing to biogeochemical cycles and possibly influencing local microbial diversity. Further studies could elucidate its specific ecological roles and interactions with other microorganisms." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus nepalensis Positive Cocci No 1 Facultative Anaerobe Chemoheterotroph Mesophilic Multiple Singles Nonsporulating 214473 QXVN00000000.1 Bac0019487 Vibrio cholerae strain VcCHNf6 "Vibrio cholerae strain VcCHNf6 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and demonstrates facultative anaerobic metabolism. This strain is heterotrophic, relying on organic compounds for energy, which allows it to thrive in diverse habitats. The optimal growth temperature for VcCHNf6 is around 20.0°C, indicating a preference for cooler environments. ↵↵Due to its Gram-negative cell wall structure, VcCHNf6 may exhibit resistance to certain antibiotics and possess a complex interaction with its surrounding environment, potentially influencing its survival and proliferation in various ecological niches. The ability of this strain to adapt to both aerobic and anaerobic conditions may provide an advantage in fluctuating environmental circumstances, such as those found in aquatic systems or sediment. ↵↵Understanding the growth characteristics and metabolic capabilities of Vibrio cholerae strain VcCHNf6 can contribute to insights into its ecological role and potential interactions within microbial communities. Its heterotrophic nature suggests a reliance on organic matter, which could implicate it in nutrient cycling within its habitats, thereby impacting broader ecological dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWF00000000.1 Bac0019488 Vibrio cholerae strain VcCHNf7 "Vibrio cholerae strain VcCHNf7 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. VcCHNf7 is classified as a heterotroph, indicating that it derives its energy from organic compounds, which is consistent with its adaptability to various habitats. The optimal growth temperature for this strain is 20.0°C, suggesting a preference for cooler environments, which may influence its ecological distribution.↵↵The ecological versatility of VcCHNf7 is highlighted by its ability to inhabit multiple environments, potentially including aquatic ecosystems and environments with varying oxygen levels. This adaptability can provide insights into its role in the microbial community dynamics and its interactions with other microorganisms in diverse habitats. Understanding the growth conditions and metabolic capabilities of VcCHNf7 may contribute to broader knowledge regarding the survival strategies of Vibrio species in fluctuating environmental conditions." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWG00000000.1 Bac0019489 Vibrio cholerae strain VcCHNf8 "Vibrio cholerae strain VcCHNf8 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, VcCHNf8 relies on organic compounds for energy, which may contribute to its adaptability in diverse habitats.↵↵Optimal growth conditions for V. cholerae strain VcCHNf8 occur at a temperature of 20.0°C, suggesting a preference for cooler environments often associated with aquatic ecosystems. The ability to inhabit multiple habitats indicates a versatile ecological niche, potentially including brackish and freshwater environments, which are characteristic of many Vibrio species.↵↵The facultative anaerobic nature of this strain may enhance its survival in fluctuating oxygen levels, a common feature of environments such as estuaries where oxygen concentration can vary significantly. Understanding the ecological role of V. cholerae strain VcCHNf8, particularly in nutrient-rich waters where organic matter is abundant, could provide insights into its interactions within microbial communities and its potential influence on nutrient cycling. This adaptability highlights the importance of environmental conditions in shaping the ecology of Vibrio species." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 QXWH00000000.1 Bac0019490 Veillonella atypica strain KHUD_V1 "Veillonella atypica strain KHUD_V1 is a Gram-negative anaerobic bacterium that resides primarily in the oral cavity. This strain is part of the Veillonella genus, which is characterized by its ability to thrive in environments devoid of oxygen. ↵↵As an anaerobe, V. atypica strain KHUD_V1 plays a role in the complex microbial ecosystem of the oral cavity, where it contributes to the degradation of organic compounds, particularly lactate, which is a byproduct of carbohydrate metabolism by other oral bacteria. This metabolic process can impact the overall microbial balance within the oral environment, potentially influencing dental health and the development of oral diseases. ↵↵The presence of V. atypica in the oral cavity highlights the intricate interactions between different microbial populations and their metabolic products. Understanding the role of this strain in the oral microbiome could provide insights into its contribution to health and disease states, as well as its potential interactions with other microbial species in this niche. Overall, V. atypica strain KHUD_V1 exemplifies the significance of anaerobic bacteria in maintaining oral microbial diversity and function." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella atypica Negative Anaerobe oral cavity 39777 QXZZ00000000.1 Bac0019491 Veillonella parvula strain KHUD_VP2 "Veillonella parvula strain KHUD_VP2 is a Gram-negative, anaerobic cocci bacterium characterized by its arrangement in chains or pairs. This strain is part of the Veillonella genus, which is known for its role in the microbiota of various host organisms. As an anaerobe, V. parvula strain KHUD_VP2 thrives in environments devoid of oxygen, which is typical for many bacteria residing in the gut and oral cavities of mammals.↵↵The host-associated habitat suggests that this strain may play a significant role in the complex microbial communities within its host, potentially contributing to metabolic processes such as the fermentation of lactate. This metabolic capability is particularly noteworthy, as Veillonella species are recognized for their ability to utilize lactate produced by other bacteria, thereby influencing the overall microbial ecology.↵↵Further investigation into the specific interactions of V. parvula strain KHUD_VP2 with its host and other microbial inhabitants could reveal insights into symbiotic relationships and the functional dynamics of microbial ecosystems. Understanding these interactions may also shed light on the broader implications for host health and disease." Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella parvula Negative Cocci No 1 1 Anaerobe Mesophilic HostAssociated Free living Chains - Pairs 29466 QYAA00000000.1 Bac0019492 Hymenobacter rubripertinctus strain CCM 8852 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter rubripertinctus 2029981 QYCN00000000.1 Bac0019493 Deinococcus sp. RM Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. RM 2316359 QYCQ00000000.1 Bac0019494 Listeria monocytogenes strain N13-0048 "Listeria monocytogenes strain N13-0048 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or as single cells. This strain is nonsporulating and exhibits facultative anaerobic growth, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 30.0°C, indicating a preference for moderate thermal conditions.↵↵As a chemoorganotroph, L. monocytogenes strain N13-0048 utilizes organic compounds as its energy source, showcasing its adaptability to various nutrient sources available in diverse habitats. This metabolic versatility may facilitate its survival in a range of environments, including soil, water, and various food products.↵↵Understanding the environmental resilience and growth characteristics of L. monocytogenes strain N13-0048 can provide insights into its ecological interactions and potential roles within microbial communities. The ability of this strain to thrive in multiple habitats suggests it may contribute to nutrient cycling processes and interact with other microorganisms in its environment, highlighting the complex dynamics of microbial ecosystems." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles Nonsporulating Human 1639 QYFE00000000.1 Bac0019495 Actinomyces sp. 2119 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. 2119 2321393 QYRR00000000.1 Bac0019496 Serratia marcescens strain O1-16 "Serratia marcescens strain O1-16 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and thrives optimally at 37.0°C. As a chemoheterotroph, this strain derives its energy from organic compounds, allowing it to adapt to various environments, as indicated by its presence in multiple habitats. Notably, Serratia marcescens is characterized by its nonsporulating nature, which suggests that it relies on other survival strategies to withstand environmental challenges rather than forming spores.↵↵The ability of strain O1-16 to grow in both aerobic and anaerobic conditions expands its ecological versatility, potentially allowing it to occupy niches where oxygen availability fluctuates. This adaptability may contribute to its success in diverse ecosystems, from soil to water environments, where organic matter is abundant. Furthermore, the strain's optimal growth temperature aligns with the conditions typically found in warm-blooded organisms, suggesting a capacity for interaction with a wide range of organic substrates.↵↵Understanding Serratia marcescens strain O1-16's metabolic capabilities and habitat preferences underscores its ecological role as a decomposer in various environments, where it may contribute to nutrient cycling through the breakdown of complex organic materials. This functional versatility highlights the importance of examining microbial traits to appreciate their contributions to ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 615 QYRU00000000.1 Bac0019497 Streptococcus agalactiae strain JF4680 "Streptococcus agalactiae strain JF4680 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain thrives optimally at a temperature of 37.0°C, indicating its adaptation to a host-associated habitat, likely reflecting its role in a biological niche within a warm-blooded host environment. As a facultative anaerobe, S. agalactiae strain JF4680 can grow in both aerobic and anaerobic conditions, showcasing metabolic flexibility that may enhance its survival and colonization ability in various environments associated with its host.↵↵The ability of S. agalactiae to exist in chains or pairs may influence its interaction dynamics within host tissues or microbial communities, potentially facilitating cooperative behavior during colonization or biofilm formation. This trait, combined with its optimal growth temperature, suggests that S. agalactiae strain JF4680 is well-suited for life within warm-blooded organisms, where it can exploit host resources and contribute to complex microbial ecosystems. Understanding the environmental adaptability and growth characteristics of this strain may offer insights into its ecological role and interactions in host-associated microbiomes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1311 QYTS00000000.1 Bac0019498 Deinococcus cavernae strain K2S05-167 Segkk31 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus cavernae 2320857 QYUJ00000000.1 Bac0019499 Oleomonas cavernae strain K1W22B-8 Segkk28 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Oleomonas Oleomonas cavernae 2320859 QYUK00000000.1 Bac0019500 Azospirillum cavernae strain K2W22B-5 Segkk8 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Azospirillum Azospirillum cavernae 2320860 QYUL00000000.1 Bac0019501 Noviherbaspirillum saxi strain K1R23-30 Segkk2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Noviherbaspirillum Noviherbaspirillum saxi 2320863 QYUO00000000.1 Bac0019502 Pseudomonas cavernicola strain K1S02-6 Segkk7 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cavernicola 2320866 QYUR00000000.1 Bac0019503 Rhodopseudomonas palustris strain 2.1.18 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas palustris 1076 QYYD00000000.1 Bac0019504 Parashewanella spongiae strain KCTC 22492 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Parashewanella Parashewanella spongiae 342950 QYYH00000000.1 Bac0019505 Escherichia coli strain ET20 "Escherichia coli strain ET20 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is within the physiological range of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli ET20 can grow in both aerobic and anaerobic environments, allowing it to exploit a variety of ecological niches within its host. ↵↵The strain's Gram-negative nature indicates the presence of a distinctive outer membrane, which may play a role in its interaction with the host's immune system and influence its survival in various environments. E. coli strains are known to exhibit diverse metabolic capabilities, and the facultative anaerobic characteristic of strain ET20 allows it to utilize different substrates depending on the availability of oxygen, potentially contributing to its adaptability and persistence in the host-associated habitat.↵↵Overall, E. coli strain ET20 exemplifies the ecological versatility of the Enterobacteriaceae family, which enables it to occupy a range of niches within the gastrointestinal tract of hosts, thus playing a significant role in microbial communities and nutrient cycling within those environments. Understanding this strain's traits can provide insights into its ecological dynamics and interactions within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QYZL00000000.1 Bac0019506 Nesterenkonia natronophila strain M8 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia natronophila 2174932 QYZP00000000.1 Bac0019507 Enterobacter chuandaensis strain 090028 38 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter chuandaensis 2497875 QZCS00000000.1 Bac0019508 Pectobacterium carotovorum strain S1.15.11.2D Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium carotovorum 554 QZDH00000000.1 Bac0019509 Parashewanella curva strain C51 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Parashewanella Parashewanella curva 2338552 QZEI00000000.1 Bac0019510 Paracoccus siganidrum strain DSM 26381 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sigandri 1276757 QZEW00000000.1 Bac0019511 Vallicoccus soli strain YIM 75000 Bacillati Actinomycetota Actinomycetes Motilibacterales Vallicoccaceae Vallicoccus Vallicoccus soli 2339232 QZEZ00000000.1 Bac0019512 Salmonella enterica subsp. enterica serovar Schwarzengrund strain "Salmonella enterica subsp. enterica serovar Schwarzengrund strain is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This microbe thrives optimally at a temperature of 37.0°C and is classified as a chemoorganotroph, indicating its reliance on organic compounds for energy. It is microaerophilic, requiring reduced oxygen levels for growth, which is typical of many bacteria that inhabit host-associated environments.↵↵The habitat of this strain, being primarily host-associated, underscores its potential interactions within a biological host, suggesting adaptations that facilitate survival and proliferation in such environments. Given its specific oxygen requirements and energy sourcing, Salmonella enterica serovar Schwarzengrund may occupy niche ecological roles that allow it to exploit resources in microenvironments where oxygen levels are limited. These traits may also influence its behavior and interactions with other microbial communities within the host, contributing to the complex dynamics of host-associated microbiomes. Further exploration of its ecological roles could provide valuable insights into its contributions to the overall health and functionality of the host organism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 340190 QZFO00000000.1 Bac0019513 Ligilactobacillus murinus strain C-30 "Ligilactobacillus murinus strain C-30 is a Gram-positive bacterium primarily found in the gastrointestinal tract and liver. As a member of the Lactobacillaceae family, this strain exhibits characteristics typical of lactic acid bacteria, which are known for their role in fermentative metabolism. Ligilactobacillus murinus strain C-30 contributes to the microbial diversity within the gut, potentially influencing host metabolism and immune responses.↵↵The strain's presence in both the gastrointestinal tract and liver suggests a potential interplay between gut microbiota and liver function, highlighting the importance of gut-liver axis interactions. Such interactions may have implications for understanding metabolic health and the maintenance of homeostasis in the host. Further research could elucidate the specific metabolic pathways utilized by Ligilactobacillus murinus strain C-30 and its role in the gut ecosystem, as well as its potential contributions to health and disease states. This strain exemplifies the intricate relationships that microbial inhabitants forge with their hosts, underlining the significance of microbial communities in overall physiological processes." Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus murinus positive gastrointestinal tract; liver 1622 QZFR00000000.1 Bac0019514 Nocardia panacis strain YIM PH 21724 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia panacis 2340916 QZFU00000000.1 Bac0019515 Amycolatopsis panacis strain YIM PH21725 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis panacis 2340917 QZFV00000000.1 Bac0019516 Moraxella catarrhalis strain COPD_M139 "Moraxella catarrhalis strain COPD_M139 is a Gram-negative, aerobic cocci that is primarily associated with host environments. This strain is part of the normal flora of the human respiratory tract, where it can coexist with other microbial communities. Moraxella catarrhalis is known for its role in respiratory infections, and the strain COPD_M139 may reflect specific adaptations that allow it to thrive in the host-associated habitat, potentially influencing its interactions with the human immune system.↵↵As an aerobe, strain COPD_M139 requires oxygen for growth, which aligns with its habitat in the oxygen-rich environment of the respiratory tract. This oxygen requirement could contribute to its metabolic activities and interactions with other microbial species present in the same ecological niche. The cocci shape of Moraxella catarrhalis may also play a role in its ability to form biofilms, which are crucial for colonization and persistence in host tissues.↵↵Understanding Moraxella catarrhalis strain COPD_M139's traits provides insights into its potential ecological roles within the respiratory microbiome. The species' ability to adapt to the host environment may have implications for its survival and persistence, particularly in individuals with compromised respiratory health. Further research into the specific interactions and functions of this strain within the host could enhance our understanding of its ecological significance in respiratory health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella catarrhalis Negative Cocci No 1 2 Aerobe Mesophilic HostAssociated Free living 480 QZGI00000000.1 Bac0019517 Moraxella catarrhalis strain COPD_M82 "Moraxella catarrhalis strain COPD_M82 is a Gram-negative, aerobic cocci that is associated with host environments. This bacterium is known for its presence in the respiratory tract, particularly in individuals with chronic obstructive pulmonary disease (COPD). As a member of the Moraxellaceae family, M. catarrhalis exhibits distinct morphological characteristics, primarily its spherical shape, which is typical of cocci.↵↵The strain's aerobic nature indicates that it requires oxygen for its metabolic processes, which may influence its survival and activity within the oxygen-rich environment of the respiratory system. M. catarrhalis is recognized for its ability to colonize the upper respiratory tract of humans, and its association with host environments suggests a potential role in respiratory health and disease dynamics.↵↵Notably, Moraxella catarrhalis has garnered attention due to its capacity to form biofilms in the respiratory tract, which may contribute to its persistence in host-associated habitats. This characteristic highlights the potential for complex interactions with the host immune system and other microbial communities. Understanding the ecological role of strain COPD_M82 within the context of respiratory conditions could provide insights into microbial dynamics and their implications for respiratory health management." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella catarrhalis Negative Cocci No 1 2 Aerobe Mesophilic HostAssociated Free living 480 QZGZ00000000.1 Bac0019518 Oxalobacter sp. Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Oxalobacter Oxalobacter sp. 2093374 QZKY00000000.1 Bac0019519 Guyparkeria sp. SCN-R1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Thioalkalibacteraceae Guyparkeria Guyparkeria sp. SCN-R1 2341113 QZMT00000000.1 Bac0019520 Cryobacterium melibiosiphilum strain Hh39 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium melibiosiphilum 995039 QZVS00000000.1 Bac0019521 Arthrobacter cheniae strain Hz2 C311 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter cheniae 1258888 QZVT00000000.1 Bac0019522 Escherichia coli strain 12-246M UB12-246M1_c978 "Escherichia coli strain 12-246M UB12-246M1_c978 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may enhance its adaptability to various host-associated habitats. The optimal growth temperature for this strain is 37.0°C, aligning with the typical physiological conditions found in warm-blooded hosts.↵↵Given its classification within the genus Escherichia, strain 12-246M UB12-246M1_c978 likely plays a role in the complex microbial communities associated with its host. Its facultative anaerobic nature suggests that it can efficiently utilize available oxygen while also possessing the metabolic flexibility to survive in low-oxygen conditions, which is advantageous for colonization in diverse ecological niches within the host. Furthermore, the arrangement of cells in pairs or singles may facilitate interactions with neighboring cells and contribute to its ecological dynamics within the microbiome.↵↵Overall, the traits of Escherichia coli strain 12-246M UB12-246M1_c978 highlight its potential for versatile metabolic capabilities and adaptability to host-associated environments, which are essential for maintaining microbial homeostasis and contributing to host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 QZVZ00000000.1 Bac0019523 Legionella taurinensis strain 4570-18-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella taurinensis 70611 QZWB00000000.1 Bac0019524 Salinisphaera sp. Q1T1-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Salinisphaerales Salinisphaeraceae Salinisphaera Salinisphaera sp. Q1T1-3 2321229 QZWD00000000.1 Bac0019525 Streptomyces sp. F001 ILL_171 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. F001 1510026 QZWF00000000.1 Bac0019526 Mesorhizobium waimense strain ICMP19557 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium waimense 1300307 QZWZ00000000.1 Bac0019527 Chakrabartia godavariana strain KCTC 52944 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Chakrabartia Chakrabartia godavariana 2056873 RAGX00000000.1 Bac0019528 Spiroplasma poulsonii strain sNeo D6D54_181 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma poulsonii 2138 RAHC00000000.1 Bac0019529 Tsuneonella suprasediminis strain Ery12 328 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Tsuneonella Tsuneonella suprasediminis 2306996 RAHJ00000000.1 Bac0019530 Aurantiacibacter aquimixticola strain JSSK-14 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Aurantiacibacter Aurantiacibacter aquimixticola 1958945 RAHX00000000.1 Bac0019531 Streptococcus pseudopneumoniae strain Spain2270 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pseudopneumoniae 257758 RAHZ00000000.1 Bac0019532 Butyrivibrio sp. CB08 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Butyrivibrio Butyrivibrio sp. CB08 2364879 RAIR00000000.1 Bac0019533 Altericroceibacterium spongiae strain HN-Y73 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Altericroceibacterium Altericroceibacterium spongiae 2320269 RAPF00000000.1 Bac0019534 Allopusillimonas ginsengisoli strain SBSA Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Allopusillimonas Allopusillimonas ginsengisoli 453575 RAPG00000000.1 Bac0019535 Sinobaca qinghaiensis strain DSM 17008 "Sinobaca qinghaiensis strain DSM 17008 is a Gram-positive, spherical bacterium characterized by its aerobic metabolism and non-spore-forming nature. Optimal growth of this strain occurs at a temperature of 29.0°C, suggesting a preference for moderately warm environments. The spherical morphology indicates a potential for different arrangements that may influence its interactions within microbial communities.↵↵As an aerobic organism, S. qinghaiensis relies on oxygen for its metabolic processes, which may play a role in its ecological niche. The absence of sporulation implies that this strain may rely on other survival strategies in response to environmental stresses, rather than forming spores as a means of resilience. ↵↵Given its specific growth requirements and morphological traits, Sinobaca qinghaiensis strain DSM 17008 may occupy unique ecological niches where aerobic conditions and moderate temperatures prevail. This adaptability could facilitate its role in nutrient cycling and microbial interactions in such environments. Understanding its physiological traits can provide insights into its potential contributions to microbial ecology and the broader implications for biogeochemical processes in ecosystems where it is found." Bacillati Bacillota Bacilli Caryophanales Sporolactobacillaceae Sinobaca Sinobaca qinghaiensis Gram-positive sphere aerobic 29 mesophilic non-spore-forming 342944 RAPK00000000.1 Bac0019536 Catellatospora citrea strain DSM 44097 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Catellatospora Catellatospora citrea 53366 RAPR00000000.1 Bac0019537 Paraburkholderia sp. BL23I1N1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL23I1N1 1938802 RAPV00000000.1 Bac0019538 Sphingobacterium detergens strain CECT 7938 "Sphingobacterium detergens strain CECT 7938 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives at an optimal growth temperature of 32.0°C. This organism belongs to the genus Sphingobacterium, which is characterized by its capacity to utilize various substrates, contributing to its adaptability in diverse environments. Notably, the strain's Gram-negative cell wall structure is indicative of its outer membrane composition, which may play a role in its interactions with environmental factors and other microorganisms.↵↵The aerobic nature of S. detergens strain CECT 7938 suggests that it requires oxygen for its metabolic processes, which aligns with its growth preferences in oxygen-rich habitats. This trait positions the strain as a potential player in the degradation of organic materials in environments where oxygen is available, such as in soil or aquatic systems.↵↵Given the known optimal temperature for growth, S. detergens strain CECT 7938 may be particularly well-suited to temperate climates or regions with moderate thermal conditions. The strain's metabolic capabilities may facilitate biogeochemical cycling, particularly in the breakdown of complex compounds. This highlights the potential ecological role of S. detergens strain CECT 7938 in nutrient recycling and organic matter decomposition, thereby contributing to ecosystem functioning and health." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium detergens Gram-negative rod non-motile aerobic 32 mesophilic non-spore-forming 1145106 RAPY00000000.1 Bac0019539 Dietzia kunjamensis strain DSM 44907 "Dietzia kunjamensis strain DSM 44907 is a Gram-positive, aerobic bacterium characterized by its rod to ovoid shape. This strain exhibits a preference for an optimal growth temperature of 27.0°C and does not form spores. The Gram-positive nature of D. kunjamensis indicates a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria within its classification. ↵↵As an aerobic organism, D. kunjamensis requires oxygen for its metabolic processes, suggesting that it may play a role in environments where oxygen is readily available. The non-spore-forming characteristic of this strain implies a reliance on favorable conditions for growth and survival, as opposed to the more resilient, dormant forms seen in spore-forming bacteria.↵↵Given its specific temperature preference and aerobic requirements, D. kunjamensis may be well-suited to thrive in temperate, oxygen-rich habitats. This adaptability can be significant in biotechnological applications, particularly in processes that require aerobic conditions for the degradation of organic compounds or biotransformation reactions. Understanding the growth parameters and metabolic capabilities of this strain could provide insights into its potential utility in environmental microbiology and bioremediation efforts." Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia kunjamensis Gram-positive rod / ovoid non-motile aerobic 27 mesophilic non-spore-forming 322509 RAQB00000000.1 Bac0019540 Microbacterium sp. AG238 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. AG238 2183994 RAQC00000000.1 Bac0019541 Tenacibaculum lutimaris strain DSM 16505 "Tenacibaculum lutimaris strain DSM 16505 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 32.0 °C. This strain is part of the Tenacibaculum genus, which is known for its association with marine environments. As a member of the Flavobacteriaceae family, T. lutimaris exhibits characteristics typical of many marine bacteria, including a potential role in the degradation of organic matter in aquatic ecosystems.↵↵The Gram-negative nature of T. lutimaris suggests a unique cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural configuration may contribute to the organism's adaptability in varying marine conditions.↵↵The optimal growth temperature of 32.0 °C indicates a preference for warm marine environments, potentially aligning with the thermal profiles of coastal waters or habitats that experience stable temperature regimes. This temperature tolerance may facilitate its survival and metabolic activity in fluctuating ecological niches, where it could play a significant role in biogeochemical cycling.↵↵In summary, Tenacibaculum lutimaris strain DSM 16505 represents a specialized organism within marine ecosystems, with its unique traits enabling it to interact with organic materials and potentially influence microbial community dynamics in its habitat. Further research may elucidate its specific ecological roles and interactions in marine environments." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum lutimaris Gram-negative rod motile 32 mesophilic 285258 RAQM00000000.1 Bac0019542 Alginatibacterium sediminis strain ALS 81 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alginatibacterium Alginatibacterium sediminis 2164068 RAQO00000000.1 Bac0019543 Pseudoroseomonas wenyumeiae strain Z24 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseomonas Teichococcus wenyumeiae 2478470 RAQU00000000.1 Bac0019544 Corallococcus llansteffanensis strain CA051B Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus llansteffanensis 2316731 RAWB00000000.1 Bac0019545 Corallococcus sp. CA049B Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CA049B 2316730 RAWC00000000.1 Bac0019546 Corallococcus carmarthensis strain CA043D Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus carmarthensis 2316728 RAWE00000000.1 Bac0019547 Corallococcus aberystwythensis strain AB050A Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus aberystwythensis 2316722 RAWK00000000.1 Bac0019548 Acinetobacter guerrae strain WCHAc060096 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter guerrae 1843371 RAXU00000000.1 Bac0019549 Butyricicoccus sp. 1XD8-22 Bacillati Bacillota Clostridia Eubacteriales Butyricicoccaceae Butyricicoccus Butyricicoccus sp. 1XD8-22 2320083 RAYA00000000.1 Bac0019550 Bacterium D16-59 strain D16-59 bacterium D16-59 2320098 RAYD00000000.1 Bac0019551 Bacterium 1xD42-67 strain 1xD42-67 bacterium 1xD42-67 2320107 RAYO00000000.1 Bac0019552 Parablautia intestinalis strain D8-82 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Parablautia Parablautia intestinalis 2320100 RAYQ00000000.1 Bac0019553 Bacterium 1XD42-8 strain 1XD42-8 bacterium 1XD42-8 2320102 RAYU00000000.1 Bac0019554 Bacterium D16-50 strain D16-50 bacterium D16-50 2320112 RAZA00000000.1 Bac0019555 Anaerotruncus sp. 1XD22-93 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Anaerotruncus Anaerotruncus sp. 1XD22-93 2320082 RAZK00000000.1 Bac0019556 Bacteroides acidifaciens strain 0.1X-D8-26 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides acidifaciens 85831 RAZM00000000.1 Bac0019557 Alteromonas sp. BL110 BL110_2576887650 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sp. BL110 1714845 RAZV00000000.1 Bac0019558 Paenibacillus ginsengarvi strain KCTC 13059 "Paenibacillus ginsengarvi strain KCTC 13059 is a Gram-positive, rod-shaped bacterium that exhibits spore-forming capabilities and thrives optimally at 37.0°C under aerobic conditions. This strain is characterized by its ability to produce endospores, which serve as a survival mechanism in adverse environmental conditions, enabling it to endure extreme stresses such as heat and desiccation. ↵↵The aerobic nature of P. ginsengarvi indicates that it requires oxygen for growth, positioning it within environments rich in oxygen, such as soil and plant rhizospheres. The optimal growth temperature of 37.0°C suggests that this strain may be well-adapted to conditions that are found in warm-blooded hosts or environments that experience elevated temperatures. ↵↵Overall, the spore-forming ability and aerobic metabolism of Paenibacillus ginsengarvi strain KCTC 13059 may contribute to its ecological role in nutrient cycling and its potential interactions with other microorganisms in its habitat. This trait profile suggests that the strain could be beneficial in biotechnological applications, particularly in agricultural contexts where it may play a role in soil health or plant growth promotion. Further studies could elucidate its specific ecological interactions and potential applications in sustainable agriculture." Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus ginsengarvi Gram-positive rod non-motile aerobic 37 mesophilic spore-forming 400777 RBAH00000000.1 Bac0019559 Streptomyces klenkii strain KCTC 29202 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces klenkii 1420899 RBAM00000000.1 Bac0019560 Micromonospora costi strain CS1-12 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora costi 1530042 RBAN00000000.1 Bac0019561 Litorimonas taeanensis strain DSM 22008 Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Robiginitomaculaceae Litorimonas Litorimonas taeanensis 568099 RBII00000000.1 Bac0019562 Maribacter vaceletii strain DSM 25230 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter vaceletii 1206816 RBIQ00000000.1 Bac0019563 Arthrobacter oryzae strain DSM 25586 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter oryzae 409290 RBIR00000000.1 Bac0019564 Acidovorax sp. 94 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp. 94 2135633 RBJA00000000.1 Bac0019565 Otariodibacter oris strain DSM 23800 "Otariodibacter oris strain DSM 23800 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is part of the diverse microbial community found in various environments, although specific ecological roles and habitats have not been definitively described. The Gram-negative nature of this organism suggests that it possesses a distinctive cell wall structure, which includes an outer membrane containing lipopolysaccharides, potentially influencing its interactions with other microorganisms and its resistance to certain antibacterial agents. ↵↵The rod shape of Otariodibacter oris may confer advantages in motility and surface adherence, facilitating its ability to colonize specific niches or participate in complex microbial interactions. While the precise physiological capabilities and metabolic pathways of this strain remain to be elucidated, its classification as a member of the microbial world implies potential roles in biogeochemical cycles or symbiotic relationships within its environment. ↵↵Further research into the metabolic functions and ecological interactions of Otariodibacter oris strain DSM 23800 could yield valuable insights into the microbial dynamics of its habitat, potentially revealing its contributions to nutrient cycling or interactions with host organisms. Understanding this strain may enhance our knowledge of Gram-negative bacteria's diversity and their functional roles in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Otariodibacter Otariodibacter oris Gram-negative rod non-motile 1032623 RBJC00000000.1 Bac0019566 Campylobacter sp. "Campylobacter sp. is a Gram-negative bacterium characterized by its helical or spiral shape and motility, primarily facilitated by a polar flagellum. This microbe is commonly found in various environments, including the intestinal tracts of birds and other animals, where it plays a role in the normal gut microbiota. Campylobacter sp. is microaerophilic, requiring reduced oxygen levels for optimal growth, which influences its distribution in both natural and artificial habitats.↵↵The species within this genus exhibit a unique metabolic capability, relying on amino acids and organic acids as their primary energy sources rather than carbohydrates. This adaptation allows Campylobacter sp. to thrive in nutrient-poor conditions often found in the gastrointestinal environments of hosts.↵↵In terms of laboratory identification, the Gram-negative nature of Campylobacter sp. is significant, as it informs both staining protocols and susceptibility to antibiotics, which are critical in clinical microbiology. The ability of Campylobacter sp. to survive at elevated temperatures, often up to 42°C, sets it apart from many other enteric pathogens, as it is well adapted to the avian gut.↵↵An intriguing aspect of Campylobacter sp. is its potential role in the ecosystem as a scavenger of organic matter, which may contribute to nutrient cycling in its habitats. This ecological insight underscores the importance of Campylobacter sp. not only as a microbe of interest in food safety and public health but also as a participant in broader ecological processes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. negative 205 RBJN00000000.1 Bac0019567 Corynebacterium sp. Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. skin 1720 RBJU00000000.1 Bac0019568 Veillonella sp. Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp. periodontal plaque biofilms 1926307 RBKO00000000.1 Bac0019569 Arthrobacter sp. AG1021 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. AG1021 2183908 RBLB00000000.1 Bac0019570 Flavobacterium endophyticum strain DSM 29537 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium endophyticum 1540163 RBLC00000000.1 Bac0019571 Gillisia mitskevichiae strain DSM 19839 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Gillisia Gillisia mitskevichiae 270921 RBLG00000000.1 Bac0019572 Paracoccus pantotrophus strain DSM 2944 "Paracoccus pantotrophus strain DSM 2944 is a Gram-negative, cocci-shaped bacterium characterized by its ability to utilize a diverse range of substrates for growth and energy production. This strain is notable for its metabolic versatility, which enables it to thrive in various environments by employing both aerobic and anaerobic respiration pathways. ↵↵As a member of the genus Paracoccus, this strain is recognized for its facultative anaerobic capabilities, allowing it to adapt to fluctuating oxygen levels. The cocci morphology of Paracoccus pantotrophus DSM 2944 contributes to its stability and resilience in different habitats, wherein it can play significant roles in nutrient cycling and bioremediation processes. ↵↵One of the key features of this strain is its ability to metabolize various carbon sources, which may include organic compounds and some inorganic substrates. This metabolic flexibility is particularly valuable in ecological contexts where nutrient availability may vary. ↵↵Overall, Paracoccus pantotrophus strain DSM 2944 exemplifies the adaptive strategies employed by microorganisms, showcasing how its cocci shape and metabolic capabilities contribute to its ecological success in diverse environments." Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus pantotrophus Cocci 82367 RBLI00000000.1 Bac0019573 Corynebacterium pseudodiphtheriticum strain HSID17231 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudodiphtheriticum 37637 RBLP00000000.1 Bac0019574 Micrococcus sp. HSID17245 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus sp. HSID17245 2419508 RBLS00000000.1 Bac0019575 Curtobacterium sp. HSID17257 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. HSID17257 2419510 RBLU00000000.1 Bac0019576 Dermabacter sp. HSID17554 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Dermabacter Dermabacter sp. HSID17554 2419511 RBLW00000000.1 Bac0019577 Kocuria sp. HSID17590 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp. HSID17590 2419513 RBMB00000000.1 Bac0019578 Corynebacterium propinquum strain HSID18034 "Corynebacterium propinquum strain HSID18034 is a Gram-positive bacterium characterized by its facultative anaerobic metabolism. As a member of the Corynebacterium genus, this strain exhibits the typical rod-shaped morphology associated with its relatives, allowing it to thrive in various environments. Its facultative anaerobic nature indicates that it can grow in both aerobic and anaerobic conditions, providing versatility in metabolic processes and potential adaptation to diverse habitats.↵↵The ability to utilize oxygen as well as fermentative pathways for energy production may enable C. propinquum strain HSID18034 to occupy ecological niches where oxygen levels fluctuate. This adaptability is particularly significant in environments where microbial communities must respond to changes in nutrient availability and redox potential. The strain's Gram-positive status suggests a robust cell wall structure, which may contribute to its survival in competitive microbial ecosystems.↵↵Further understanding of C. propinquum strain HSID18034's metabolic capabilities could reveal insights into its role within microbial communities, particularly in relation to nutrient cycling and interactions with other microorganisms. Overall, the traits of this strain underscore the ecological flexibility that is characteristic of many Corynebacterium species, suggesting its potential involvement in biogeochemical processes within its native habitats." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium propinquum Positive Facultative anaerobe 43769 RBMC00000000.1 Bac0019579 Pseudarthrobacter phenanthrenivorans strain J015 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter phenanthrenivorans 361575 RBNH00000000.1 Bac0019580 Pseudomonas savastanoi pv. glycinea strain ICMP 9589 "Pseudomonas savastanoi pv. glycinea strain ICMP 9589 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it relies on organic compounds for energy. It demonstrates an aerobic mode of metabolism, requiring oxygen for growth and survival. ↵↵The habitat of Pseudomonas savastanoi pv. glycinea strain ICMP 9589 is diverse, allowing it to thrive in a variety of environments. This adaptability may contribute to its ecological versatility, enabling it to colonize different niches within its surroundings. The unique combination of its morphological characteristics and metabolic processes suggests that this strain may play a role in the degradation of organic materials in its habitat, potentially influencing nutrient cycling and community dynamics in microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 318 RBNP00000000.1 Bac0019581 Pseudomonas syringae pv. atrofaciens strain DSM 5025 "Pseudomonas syringae pv. atrofaciens strain DSM 5025 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds, and it requires aerobic conditions for growth, reflecting its dependence on oxygen. ↵↵Pseudomonas syringae pv. atrofaciens is known to inhabit various environments, showcasing its ecological versatility. The ability to thrive in multiple habitats may contribute to its adaptability, allowing it to exploit diverse organic substrates and survive in fluctuating environmental conditions. ↵↵Research into the physiological traits of this strain could provide insights into its role in the ecosystem, particularly in soil and plant-associated environments, where such bacteria may participate in nutrient cycling and influence plant health. The ecological significance of Pseudomonas syringae pv. atrofaciens lies in its potential interactions with other microorganisms and its contributions to the dynamics of microbial communities in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 192087 RBNQ00000000.1 Bac0019582 Pseudomonas syringae pv. ribicola strain ICMP 3883 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 55398 RBNR00000000.1 Bac0019583 Pseudomonas syringae pv. syringae strain HS191 "Pseudomonas syringae pv. syringae strain HS191 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain exhibits heterotrophic metabolism, utilizing organic compounds as its energy source, and is classified as an aerobe, requiring oxygen for growth. P. syringae pv. syringae strains are known to inhabit diverse environments, highlighting their ecological versatility and ability to thrive in multiple habitats.↵↵The combination of these traits underscores the organism's adaptability, allowing it to exploit a variety of ecological niches. Its rod shape and single-cell arrangement may facilitate movement and colonization in different environments, potentially influencing its interactions with other microorganisms and the surrounding ecosystem. Understanding the metabolic and ecological roles of P. syringae pv. syringae strain HS191 could provide insights into its contributions to nutrient cycling and its potential interactions within microbial communities in various habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 321 RBNV00000000.1 Bac0019584 Pseudomonas savastanoi pv. savastanoi strain ICMP 13519 "Pseudomonas savastanoi pv. savastanoi strain ICMP 13519 is a Gram-negative, rod-shaped bacterium that exists as single cells and exhibits aerobic metabolic characteristics. As a heterotroph, this strain relies on organic compounds for energy, allowing it to thrive in a variety of habitats. This versatility in energy sourcing and habitat adaptability suggests that P. savastanoi pv. savastanoi strain ICMP 13519 may play significant roles in various ecological niches, potentially influencing organic matter decomposition and nutrient cycling. The ability of this strain to occupy diverse environments highlights its ecological importance and adaptability in microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 360920 RBNW00000000.1 Bac0019585 Pseudomonas savastanoi pv. glycinea strain ICMP 807 "Pseudomonas savastanoi pv. glycinea strain ICMP 807 is a Gram-negative, rod-shaped bacterium that exists predominantly as single cells and is classified as an aerobic heterotroph. This strain demonstrates versatility in its habitat, being found in multiple environments, which may contribute to its adaptability and survival in diverse ecological niches.↵↵As a Gram-negative organism, P. savastanoi pv. glycinea strain ICMP 807 possesses a complex cell envelope structure that includes an outer membrane containing lipopolysaccharides, which can play a role in its interactions with the environment and potential host organisms. The aerobic nature of this strain indicates that it relies on oxygen for respiration, a trait that is often associated with the ability to thrive in well-oxygenated environments.↵↵The heterotrophic metabolism of this bacterium allows it to utilize organic compounds as energy sources, which may facilitate its growth in various ecological settings where organic matter is available. This metabolic flexibility can be advantageous in fluctuating environments, enabling P. savastanoi pv. glycinea strain ICMP 807 to exploit a range of substrates and potentially outcompete other microbial inhabitants.↵↵Overall, the ecological success of Pseudomonas savastanoi pv. glycinea strain ICMP 807 may be linked to its adaptability to different habitats, coupled with its metabolic capabilities, allowing it to play a dynamic role in the microbial community structure it inhabits." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 318 RBNZ00000000.1 Bac0019586 Pseudomonas syringae strain A7386 "Pseudomonas syringae strain A7386 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is heterotrophic, utilizing organic compounds as an energy source, and is classified as an aerobic organism, requiring oxygen for its metabolic processes. The ability of Pseudomonas syringae strains to thrive in multiple habitats suggests a high level of ecological versatility, allowing them to occupy diverse environmental niches.↵↵Given its traits, Pseudomonas syringae strain A7386 may play significant roles in various ecosystems, particularly in nutrient cycling and organic matter degradation. Its adaptability to different habitats can facilitate interactions with various other microorganisms and plants, potentially influencing microbial community dynamics and ecosystem functions. Understanding the ecological role of this strain could provide insights into its contribution to environmental health and stability." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 RBOB00000000.1 Bac0019587 Pseudomonas amygdali pv. lachrymans strain YM8003 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 53707 RBOH00000000.1 Bac0019588 Pseudomonas corrugata strain NCPPB2445 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas corrugata 47879 RBOJ00000000.1 Bac0019589 Pseudomonas syringae pv. atrofaciens strain ICMP 5011 "Pseudomonas syringae pv. atrofaciens strain ICMP 5011 is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells. This strain is classified as a heterotroph, indicating that it requires organic compounds for energy production. It thrives in various habitats, reflecting its adaptability to diverse environmental conditions. Additionally, P. syringae pv. atrofaciens strain ICMP 5011 is an aerobe, meaning it requires oxygen for survival and growth.↵↵The combination of these traits suggests that this strain may play a significant role in various ecosystems, potentially contributing to nutrient cycling and organic matter decomposition. Its broad habitat range indicates that it can inhabit different ecological niches, which may enhance its interactions within microbial communities. Understanding the ecological role of Pseudomonas syringae pv. atrofaciens strain ICMP 5011 in its natural environments could provide insights into its contributions to soil health and plant interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 192087 RBOK00000000.1 Bac0019590 Pseudomonas savastanoi pv. glycinea strain ICMP 4324 "Pseudomonas savastanoi pv. glycinea strain ICMP 4324 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy, and it requires oxygen for growth, categorizing it as an aerobe. The habitat of this bacterium is noted to be diverse, suggesting its adaptability to various environmental conditions.↵↵The morphological traits of P. savastanoi pv. glycinea strain ICMP 4324, characterized by its rod shape and solitary cell arrangement, may facilitate its survival and nutrient acquisition in different ecological niches. Its heterotrophic metabolism allows it to exploit a range of organic substrates, which could contribute to its presence in various habitats, including soil and plant-associated environments.↵↵Understanding the physiological characteristics of Pseudomonas savastanoi pv. glycinea strain ICMP 4324 may provide insights into its ecological roles, particularly in relation to nutrient cycling and interactions with other microorganisms in its habitat. This strain's ability to thrive in multiple environments underscores the ecological flexibility often observed in Pseudomonas species, which can have implications for their roles in both natural ecosystems and agricultural contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 318 RBON00000000.1 Bac0019591 Pseudomonas coronafaciens pv. striafaciens strain ICMP 4418 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 235276 RBOP00000000.1 Bac0019592 Pseudomonas coronafaciens pv. zizaniae strain ICMP 8941 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 251700 RBOZ00000000.1 Bac0019593 Pseudomonas syringae pv. papulans strain ICMP 4040 "Pseudomonas syringae pv. papulans strain ICMP 4040 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds for energy. It thrives in various habitats, suggesting a versatile ecological adaptability. As an aerobic organism, Pseudomonas syringae pv. papulans strain ICMP 4040 requires oxygen for its metabolic processes, which aligns with the characteristics of many Pseudomonas species known for their environmental resilience.↵↵The capacity of this strain to inhabit multiple environments may contribute to its ecological significance, as it can potentially interact with various biological and abiotic factors, influencing nutrient cycling and microbial community dynamics. Its heterotrophic lifestyle allows it to participate in the decomposition of organic materials, thereby playing a role in ecosystem functioning. Understanding the specific environmental niches occupied by Pseudomonas syringae pv. papulans strain ICMP 4040 could provide insights into its role within microbial communities and its potential applications in biotechnology or environmental management." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 83963 RBPA00000000.1 Bac0019594 Pseudomonas syringae strain 1188_1 "Pseudomonas syringae strain 1188_1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits heterotrophic metabolism, utilizing organic compounds as its energy source. This strain is classified as an aerobe, indicating that it requires oxygen for growth and metabolic processes. The versatility of Pseudomonas syringae strain 1188_1 is reflected in its ability to inhabit multiple environments, suggesting a broad ecological adaptability.↵↵The ability to thrive in diverse habitats may be linked to its metabolic flexibility, allowing it to utilize various organic substrates. The ecological role of Pseudomonas syringae strains, including 1188_1, is often associated with interactions within plant environments, which may include participation in nutrient cycling and potential involvement in plant-microbe interactions. The adaptability of this strain to aerobic conditions further underscores its potential significance in various ecological niches where oxygen is available.↵↵This unique combination of traits positions Pseudomonas syringae strain 1188_1 as a microbe of interest in studies of microbial ecology, particularly in understanding how such bacteria can function in both soil and phytospheric environments, potentially influencing plant health and soil dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles Plant 317 RBPG00000000.1 Bac0019595 Pseudomonas cannabina strain ICMP 15201 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cannabina 86840 RBPH00000000.1 Bac0019596 Pseudomonas amygdali pv. eriobotryae strain ICMP 4316 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 129137 RBPV00000000.1 Bac0019597 Pseudomonas amygdali pv. morsprunorum strain ICMP 3897 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 129138 RBQD00000000.1 Bac0019598 Pseudomonas syringae pv. delphinii strain ICMP 4330 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 192088 RBQG00000000.1 Bac0019599 Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 "Pseudomonas savastanoi pv. retacarpa strain ICMP 16946 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and exhibits aerobic metabolism as a heterotroph. This strain has been identified in multiple habitats, indicating its versatile ecological adaptability.↵↵As a member of the Pseudomonas genus, this bacterium is likely to be involved in various biochemical processes within its environments, potentially contributing to nutrient cycling and organic matter decomposition. Its aerobic nature suggests that it thrives in oxygen-rich conditions, which may influence its distribution in soil and plant-associated habitats. The ability to utilize a range of organic compounds as energy sources further underscores its adaptability and role in diverse ecological niches.↵↵Notably, the isolation of strain ICMP 16946 in particular environments may reflect its capacity to respond to varying ecological pressures, such as nutrient availability or competition with other microbial communities. This adaptability enhances our understanding of Pseudomonas savastanoi pv. retacarpa's potential ecological roles, emphasizing its importance in maintaining microbial diversity and function in its respective habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 663708 RBQM00000000.1 Bac0019600 Pseudomonas syringae pv. atrofaciens strain ICMP 1852 "Pseudomonas syringae pv. atrofaciens strain ICMP 1852 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and functions as a heterotroph. This strain is classified as an aerobic organism, requiring oxygen for its metabolic processes. Pseudomonas syringae pv. atrofaciens, as a member of the Pseudomonas genus, is known to inhabit diverse environments, suggesting a broad ecological versatility.↵↵The ability of this bacterium to thrive in multiple habitats may be attributed to its metabolic flexibility, allowing it to utilize a variety of organic compounds for energy. This trait is particularly advantageous in fluctuating environmental conditions, where nutrient availability can vary significantly. Moreover, the aerobic nature of Pseudomonas syringae pv. atrofaciens indicates that it might play a role in the cycling of carbon and other nutrients in its ecosystems, especially in oxygen-rich environments.↵↵Overall, the ecological implications of strain ICMP 1852 extend to its potential involvement in biogeochemical processes and its adaptability to various ecological niches, reinforcing the significance of Pseudomonas species in microbial ecology and their interactions within diverse ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 192087 RBQO00000000.1 Bac0019601 Pseudomonas marginalis pv. marginalis strain ICMP 9503 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marginalis 97473 RBQQ00000000.1 Bac0019602 Pseudomonas syringae pv. delphinii strain ICMP 13052 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 192088 RBRA00000000.1 Bac0019603 Pseudomonas syringae pv. berberidis strain ICMP 4065 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251704 RBRC00000000.1 Bac0019604 Pseudomonas amygdali pv. mori strain ICMP 535 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 34065 RBRD00000000.1 Bac0019605 Pseudomonas cichorii strain ICMP 3353 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas cichorii 36746 RBRE00000000.1 Bac0019606 Pseudomonas savastanoi pv. phaseolicola strain ICMP 637 "Pseudomonas savastanoi pv. phaseolicola strain ICMP 637 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, allowing it to thrive in diverse habitats. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. ↵↵The adaptability of Pseudomonas savastanoi pv. phaseolicola strain ICMP 637 to various environments suggests a versatile lifestyle, potentially enabling it to occupy ecological niches where organic substrates are available. Its single-cell arrangement may facilitate rapid colonization of surfaces and efficient nutrient acquisition, characteristics that are common in many Pseudomonas species. The ability to utilize a range of organic materials for energy could be advantageous in fluctuating environments, enhancing its survival and proliferation in both natural and anthropogenic settings. ↵↵Overall, the ecological versatility of this strain underscores the importance of Pseudomonas species in microbial communities, particularly in their roles in nutrient cycling and interactions with other organisms in their habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 319 RBRG00000000.1 Bac0019607 Pseudomonas syringae pv. tomato strain ICMP 7230 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 323 RBRI00000000.1 Bac0019608 Pseudomonas syringae pv. helianthi strain ICMP 3549 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7 251654 RBRP00000000.1 Bac0019609 Pseudomonas syringae pv. primulae strain ICMP 8670 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 251707 RBRQ00000000.1 Bac0019610 Pseudomonas amygdali pv. ulmi strain ICMP 5931 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 251720 RBRS00000000.1 Bac0019611 Pseudomonas savastanoi pv. fraxini strain ICMP 9129 "Pseudomonas savastanoi pv. fraxini strain ICMP 9129 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds, which allows it to thrive in diverse habitats. As an aerobic organism, it requires oxygen for its metabolic processes, which further reflects its adaptability to a variety of environments.↵↵The ability of Pseudomonas savastanoi pv. fraxini strain ICMP 9129 to occupy multiple habitats suggests a versatile ecological role, potentially allowing it to interact with various organic substrates and other microbial communities. This adaptability may contribute to its survival in fluctuating environmental conditions, underscoring the ecological significance of this bacterium within its native ecosystem. Understanding the characteristics and ecological interactions of this strain could provide insights into its potential roles in nutrient cycling and its relationships within microbial consortia." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 360922 RBSA00000000.1 Bac0019612 Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens 235275 RBSJ00000000.1 Bac0019613 Pseudomonas savastanoi strain ICMP 13685 "Pseudomonas savastanoi strain ICMP 13685 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating its reliance on organic compounds as an energy source, and it requires oxygen for growth, categorizing it as an aerobic organism. The species has been identified in various habitats, suggesting a versatile ecological presence.↵↵The adaptability of Pseudomonas savastanoi strain ICMP 13685 to different environments may be attributed to its metabolic flexibility, allowing it to utilize a range of organic substrates. This characteristic enhances its potential role in diverse ecological niches, where it may contribute to biogeochemical cycles and interact with other microorganisms. Understanding the specific conditions under which this strain thrives can provide insight into its ecological contributions and potential applications in bioremediation or agricultural contexts, where such bacteria might influence plant health or soil dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 29438 RBSL00000000.1 Bac0019614 Pseudomonas syringae pv. aceris strain ICMP 9850 "Pseudomonas syringae pv. aceris strain ICMP 9850 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and exhibits aerobic metabolic characteristics. This strain is heterotrophic, indicating its reliance on organic compounds for energy. Pseudomonas syringae pv. aceris is known to inhabit multiple environments, which may contribute to its versatility and adaptability in various ecological niches.↵↵The rod shape and aerobic nature of this bacterium suggest that it thrives in oxygen-rich environments, potentially allowing for efficient metabolic processes that utilize organic substrates. The ability to exist as solitary cells may afford it advantages in nutrient uptake and resource allocation, particularly in heterogeneous habitats where competition with other microorganisms can be significant.↵↵Given its diverse habitat preferences and metabolic flexibility, Pseudomonas syringae pv. aceris strain ICMP 9850 may play a role in nutrient cycling within its ecosystem, potentially aiding in the decomposition of organic materials. This ecological function highlights the importance of studying such microorganisms to understand their contributions to environmental processes and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 199198 RBSM00000000.1 Bac0019615 Pseudomonas ficuserectae strain ICMP 7849 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas ficuserectae 53410 RBSO00000000.1 Bac0019616 Pseudomonas syringae pv. aceris strain ICMP 9852 "Pseudomonas syringae pv. aceris strain ICMP 9852 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotroph, it derives its energy from organic compounds, allowing it to thrive in a variety of habitats. This strain requires oxygen for growth, categorizing it as an aerobe.↵↵The versatility of Pseudomonas syringae pv. aceris strain ICMP 9852 in utilizing heterotrophic metabolism suggests an ecological adaptability that could enable it to occupy diverse environments, possibly contributing to nutrient cycling and organic matter decomposition in its habitats. Further studies may elucidate its specific roles within microbial communities, particularly its interactions with other organisms and potential influences on environmental dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 199198 RBSS00000000.1 Bac0019617 Pseudomonas syringae pv. aceris strain ICMP 9851 "Pseudomonas syringae pv. aceris strain ICMP 9851 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, reflecting its adaptation to diverse habitats. This strain requires oxygen for growth, characterizing it as an aerobic microbe.↵↵The versatility of Pseudomonas syringae pv. aceris strain ICMP 9851 in its ecological niches may be linked to its metabolic capabilities, allowing it to thrive in a variety of environments. The presence of this strain in multiple habitats suggests a potential role in nutrient cycling and ecological interactions within those ecosystems. Notably, its adaptability to different environmental conditions may provide insights into the broader ecological significance of Pseudomonas species, particularly in relation to their contributions to soil health and plant-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 199198 RBST00000000.1 Bac0019618 Pseudomonas savastanoi strain ICMP 13927 "Pseudomonas savastanoi strain ICMP 13927 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives energy from organic compounds rather than photosynthesis or inorganic sources. Pseudomonas savastanoi exhibits aerobic respiration, requiring oxygen for growth and metabolic processes.↵↵The habitat of strain ICMP 13927 is diverse, suggesting its adaptability to various environmental conditions. As a member of the Pseudomonas genus, which is known for its metabolic versatility, this strain may play a significant role in nutrient cycling within its ecosystem. Its ability to thrive in multiple habitats indicates that it could be involved in interactions with various organic substrates, contributing to the decomposition of organic matter and influencing soil health.↵↵The ecological implications of Pseudomonas savastanoi strain ICMP 13927's heterotrophic and aerobic nature underscore its potential significance in various environments, particularly in contexts where organic material is abundant. Understanding the specific ecological role of this strain could provide insights into its contributions to microbial community dynamics and nutrient cycling processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 29438 RBSV00000000.1 Bac0019619 Pseudomonas savastanoi strain ICMP 9421 "Pseudomonas savastanoi strain ICMP 9421 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotrophic organism, relying on organic compounds as its energy source. It is an aerobic microbe, necessitating the presence of oxygen for its metabolic processes. ↵↵Pseudomonas savastanoi strain ICMP 9421 has been identified in various habitats, indicating its ecological versatility. The ability to thrive in multiple environments may be attributed to its metabolic flexibility and adaptation to different nutrient sources, which is characteristic of the Pseudomonas genus. ↵↵This strain's ecological adaptability not only highlights the diverse roles that Pseudomonas species can play in their respective ecosystems but also suggests potential interactions with a variety of substrates found in its habitats, contributing to nutrient cycling and possibly influencing microbial community dynamics. Further investigation into its specific ecological niches could provide insights into its functional roles within those environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 29438 RBSW00000000.1 Bac0019620 Pseudomonas amygdali pv. lachrymans strain N7512 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 53707 RBTB00000000.1 Bac0019621 Pseudomonas syringae pv. spinaceae strain ICMP 16928 "Pseudomonas syringae pv. spinaceae strain ICMP 16928 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is categorized as a heterotroph, utilizing organic compounds for energy, which allows it to thrive in a variety of habitats. As an obligate aerobe, it requires oxygen for its metabolic processes, further influencing its ecological niche.↵↵The versatility of Pseudomonas syringae pv. spinaceae strain ICMP 16928 in adapting to multiple environments showcases its potential ecological significance. Its ability to occupy diverse habitats may contribute to its interactions with various plant species, possibly influencing plant health and soil dynamics in those ecosystems. Understanding the specific ecological roles of this strain could provide insights into its function in microbial communities and its potential applications in agriculture or biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264459 RBTF00000000.1 Bac0019622 Pseudomonas syringae pv. solidagae strain ICMP 16927 "Pseudomonas syringae pv. solidagae strain ICMP 16927 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is categorized as a heterotroph, indicating that it derives its energy from organic compounds, which allows it to thrive in various environments. As an aerobic organism, P. syringae pv. solidagae strain ICMP 16927 requires oxygen for its metabolic processes, which influences its distribution and ecological interactions.↵↵The broad habitat range of this strain suggests its adaptability to diverse environmental conditions, potentially enabling it to occupy niches where organic substrates are available. The ability to grow in multiple habitats may also facilitate interactions with various plant species, which can be significant in understanding its role within microbial communities.↵↵This strain, like other members of the Pseudomonas genus, may contribute to nutrient cycling in its ecosystem, particularly in the decomposition of organic matter, thus playing a role in soil health and fertility. Further studies on its metabolic pathways could elucidate its specific contributions to ecological processes, particularly in relation to organic matter turnover and its interactions with plant hosts in diverse habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 264458 RBTG00000000.1 Bac0019623 Pseudomonas savastanoi pv. nerii strain ICMP 13786 "Pseudomonas savastanoi pv. nerii strain ICMP 13786 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and utilizes a heterotrophic mode of metabolism, relying on organic compounds as its energy source. This strain is classified as an aerobic microbe, indicating that it requires oxygen for its growth and metabolic processes.↵↵Pseudomonas savastanoi pv. nerii has been identified in various habitats, suggesting a degree of ecological versatility. This broad habitat range may contribute to the strain's adaptability and potential interactions with different environmental factors. The ability to thrive in diverse conditions underscores the ecological significance of this microbe in various ecosystems, where it could participate in nutrient cycling and contribute to soil health.↵↵Overall, Pseudomonas savastanoi pv. nerii strain ICMP 13786 exemplifies the diversity and adaptability of the Pseudomonas genus, highlighting its potential role in various ecological contexts. This adaptability may enable the strain to exploit a variety of organic substrates, thereby influencing microbial communities and ecosystem dynamics where it is present." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 360921 RBTN00000000.1 Bac0019624 Pseudomonas savastanoi pv. nerii strain ICMP 13781 "Pseudomonas savastanoi pv. nerii strain ICMP 13781 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, indicating that it derives its energy from organic compounds. It is an aerobic organism, requiring oxygen for its metabolic processes. ↵↵The habitat of Pseudomonas savastanoi pv. nerii strain ICMP 13781 is diverse, suggesting that it can thrive in a variety of environmental conditions. The ability to adapt to multiple habitats may contribute to its ecological versatility, potentially allowing it to interact with various organic substrates present in its environment. ↵↵The unique combination of its Gram-negative cell structure and aerobic metabolism suggests that this strain may play a role in the degradation of organic materials in oxygen-rich environments. Such capabilities could be significant in nutrient cycling, particularly in ecosystems where organic matter is abundant. Further exploration of its ecological roles could provide insights into its interactions with other microbial communities and its contributions to environmental health." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 360921 RBTO00000000.1 Bac0019625 Pseudomonas marginalis pv. marginalis strain ICMP 14937 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas marginalis 97473 RBTQ00000000.1 Bac0019626 Pseudomonas syringae pv. coriandricola strain ICMP 9829 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 264453 RBTT00000000.1 Bac0019627 Pseudomonas avellanae strain ICMP 9749 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas avellanae 46257 RBTX00000000.1 Bac0019628 Pseudomonas syringae pv. avii strain ICMP 14479 "Pseudomonas syringae pv. avii strain ICMP 14479 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a heterotroph, relying on organic compounds for its energy needs, and it is an obligate aerobe, necessitating oxygen for growth and metabolic processes. The strain has been isolated from a variety of habitats, suggesting a versatile adaptability to different environmental conditions.↵↵The rod shape and solitary cell arrangement of P. syringae pv. avii strain ICMP 14479 may contribute to its survival and proliferation across diverse ecological niches. Given its heterotrophic lifestyle and requirement for aerobic conditions, it likely plays a role in nutrient cycling within its habitats, potentially influencing the microbial community structure and dynamics. The ability to thrive in multiple environments indicates its ecological significance and adaptability, which may also provide insights into its interactions with other microorganisms and its role in biogeochemical processes. Further investigation into this strain could enhance our understanding of its ecological functions and potential applications in microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 663959 RBUA00000000.1 Bac0019629 Pseudomonas syringae pv. aptata strain ICMP 11935 "Pseudomonas syringae pv. aptata strain ICMP 11935 is a Gram-negative, rod-shaped bacterium that exists as single cells and is classified as a heterotrophic aerobe. This strain is capable of utilizing a variety of organic compounds as energy sources, which allows it to thrive in diverse habitats. Its aerobic nature indicates that it requires oxygen for growth, a characteristic that often influences its ecological distribution and interactions within various environments.↵↵The ability of Pseudomonas syringae pv. aptata strain ICMP 11935 to adapt to multiple habitats suggests a versatile metabolic capacity, which may include the degradation of complex organic materials. This adaptability is indicative of the broader ecological role that members of the Pseudomonas genus often play, including involvement in nutrient cycling and potential bioremediation processes. Understanding the ecological adaptations and metabolic pathways of this strain could provide insights into its interactions with other microorganisms in its native habitats, as well as its potential applications in environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 83167 RBUF00000000.1 Bac0019630 Pseudomonas syringae pv. apii strain ICMP 11947 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 81036 RBUG00000000.1 Bac0019631 Pseudomonas savastanoi strain ICMP 11895 "Pseudomonas savastanoi strain ICMP 11895 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is characterized by its heterotrophic metabolism and aerobic respiration. This strain has been isolated from diverse habitats, indicating its adaptability to various environmental conditions. As a heterotroph, P. savastanoi strain ICMP 11895 relies on organic compounds for energy, which may allow it to thrive in nutrient-rich environments commonly found in both natural and anthropogenic settings.↵↵The aerobic nature of this microbe suggests that it requires oxygen for growth, which could influence its distribution and ecological interactions in its habitats. The ability to metabolize organic matter can contribute to nutrient cycling within these ecosystems, highlighting the role of Pseudomonas savastanoi strain ICMP 11895 in the decomposition processes that support various trophic levels. Additionally, the bacterium's survival in multiple habitats may reflect its ecological versatility and potential to engage in complex interactions with other microorganisms and plants. Further investigation into this strain could provide insights into its specific ecological roles and contributions to microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas savastanoi Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 29438 RBUO00000000.1 Bac0019632 Pseudomonas syringae pv. maculicola strain ICMP 11281 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 59511 RBUQ00000000.1 Bac0019633 Pseudomonas syringae pv. helianthi strain ICMP 3263 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7 251654 RBUT00000000.1 Bac0019634 Pseudomonas amygdali pv. sesami strain ICMP 7459 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas amygdali 86841 RBUZ00000000.1 Bac0019635 Lactococcus lactis subsp. lactis bv. diacetylactis strain S50-1RSS "Lactococcus lactis subsp. lactis bv. diacetylactis strain S50-1RSS is a Gram-positive, nonsporulating coccus that thrives optimally at a temperature of 40.0°C. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may contribute to its adaptability in various habitats. ↵↵Lactococcus lactis is commonly found in diverse environments, including dairy products, where it plays a crucial role in fermentation processes. This particular strain, S50-1RSS, may exhibit unique metabolic capabilities that contribute to its ecological versatility. Its facultative anaerobic nature allows it to survive in fluctuating oxygen levels, which is beneficial in environments where aerobic and anaerobic conditions may alternate.↵↵The ability of L. lactis subsp. lactis bv. diacetylactis to perform fermentation, particularly in the production of lactic acid and diacetyl, positions it as a valuable microorganism in the food industry, particularly in cheese and yogurt manufacturing. Furthermore, the strain's optimal growth temperature suggests it may be particularly well-suited for processes that require elevated temperatures, potentially influencing its application in industrial fermentation settings. The adaptability of this strain to multiple habitats underlines its significance in both ecological and industrial contexts, highlighting its potential utility in biotechnological applications where temperature and oxygen levels may vary." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 44688 RBVN00000000.1 Bac0019636 Salibacterium salarium strain IM0101 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salibacterium Salibacterium salarium 284579 RBVX00000000.1 Bac0019637 Escherichia coli strain NGCE-33 "Escherichia coli strain NGCE-33 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for NGCE-33 is 37.0°C, which aligns with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat.↵↵As a member of the diverse E. coli species, strain NGCE-33's ability to thrive in a host-associated environment suggests potential interactions with the host microbiome, contributing to nutrient cycling and metabolic processes. The facultative anaerobic trait further implies that NGCE-33 may play a role in various metabolic pathways, depending on the oxygen availability within its ecological niche. Understanding the specific interactions and metabolic contributions of NGCE-33 within its host environment could provide insights into its functional role in maintaining microbial diversity and stability in the gastrointestinal tract or other associated systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RBWA00000000.1 Bac0019638 Desulfofundulus salinus strain 435 Bacillati Bacillota Clostridia Eubacteriales Peptococcaceae Desulfofundulus Desulfofundulus salinus 2419843 RBWE00000000.1 Bac0019639 Sphingobacterium puteale strain M05W1-28 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium puteale 2420510 RBWS00000000.1 Bac0019640 Sphingosinicella microcystinivorans strain DSM 19791 "Sphingosinicella microcystinivorans strain DSM 19791 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0°C. This strain is characterized by its ability to degrade microcystins, which are potent toxins produced by cyanobacteria, suggesting a role in bioremediation processes in aquatic environments. ↵↵As a member of the microbial community, Sphingosinicella microcystinivorans contributes to the cycling of nutrients and the detoxification of harmful compounds, potentially influencing the dynamics of ecosystems affected by cyanobacterial blooms. The aerobic nature of this organism indicates its reliance on oxygen for metabolic processes, highlighting its role in aerobic environments and emphasizing its potential utility in strategies aimed at mitigating the impacts of microcystin pollution in freshwater systems. This bacterium thus represents a significant biological agent for research into bioprocesses that address environmental contamination by cyanobacterial toxins." Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingosinicellaceae Sphingosinicella Sphingosinicella microcystinivorans Gram-negative rod aerobic 29 mesophilic non-spore-forming 335406 RBWX00000000.1 Bac0019641 Orbus hercynius strain DSM 22228 "Orbus hercynius strain DSM 22228 is an ovoid-shaped microorganism characterized by its optimal growth temperature of 25.0°C. This strain, belonging to the broader category of microbes, demonstrates a distinct morphology that may influence its interactions within its environment and its potential applications in various fields. The ovoid shape is a notable trait, as it can affect the microbe's surface area-to-volume ratio, potentially impacting nutrient uptake and metabolic efficiency.↵↵The optimal growth temperature of 25.0°C suggests that Orbus hercynius strain DSM 22228 is well-adapted to moderate thermal environments, which may reflect its natural habitat or ecological niche. This temperature preference indicates that the strain might thrive in environments such as soil, freshwater, or decaying organic matter, where it can contribute to nutrient cycling and organic matter decomposition.↵↵Given its morphological and thermal characteristics, Orbus hercynius strain DSM 22228 could play a significant role in the microbial community dynamics of its ecosystem. Its ovoid shape may facilitate specific interactions with other microorganisms, contributing to symbiotic relationships or competitive dynamics. Further investigation into its metabolic pathways and ecological interactions could reveal its potential contributions to ecosystem health and stability. Understanding these aspects of Orbus hercynius could provide insights into the functional roles of ovoid-shaped microbes within their natural habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Orbales Orbaceae Orbus Orbus hercynius ovoid non-motile 25 mesophilic 593135 RBWY00000000.1 Bac0019642 Flavobacterium limicola strain DSM 15094 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium limicola aerobic psychrophilic Fresh water 180441 RBXA00000000.1 Bac0019643 Chryseobacterium defluvii strain DSM 14219 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium defluvii aerobic 160396 RBXB00000000.1 Bac0019644 Streptomyces sp. 1114.5 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 1114.5 1938830 RBXE00000000.1 Bac0019645 Thiocapsa rosea strain DSM 235 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thiocapsa Thiocapsa rosea anaerobic 69360 RBXL00000000.1 Bac0019646 Coprobacter fastidiosus NSB1 = JCM 33896 strain NSB1 "Coprobacter fastidiosus NSB1 (JCM 33896) is a Gram-negative, rod-shaped bacterium that is strictly anaerobic and does not form spores. This species is part of the diverse microbial communities found in anaerobic environments, where it may contribute to various biochemical processes. ↵↵As a non-spore-forming organism, C. fastidiosus NSB1 relies on an oxygen-free environment for growth and survival, which may limit its occurrence to specific niches such as the gastrointestinal tract of animals or other organic-rich anaerobic settings. The absence of sporulation suggests that its survival strategies may involve metabolic adaptations rather than dormancy mechanisms commonly observed in spore-forming bacteria.↵↵C. fastidiosus NSB1's characteristics indicate its potential role in organic matter decomposition and nutrient cycling in anaerobic ecosystems. Understanding the metabolic pathways and interactions of this microbe could provide insights into its ecological functions, particularly in the degradation of complex organic compounds and the maintenance of microbial diversity in low-oxygen environments. Further research on this strain may elucidate its specific contributions to the microbiome dynamics and nutrient turnover in its native habitats." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Coprobacter Coprobacter fastidiosus Gram-negative rod non-motile anaerobic non-spore-forming 1349822 RBXN00000000.1 Bac0019647 Saccharothrix australiensis strain DSM 43800 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix australiensis 29 mesophilic 2072 RBXO00000000.1 Bac0019648 Vibrio vulnificus strain VA-WGS-18041 "Vibrio vulnificus strain VA-WGS-18041 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is a heterotrophic organism, deriving energy from organic compounds in its aquatic habitat. It exhibits facultative anaerobic respiration, allowing it to thrive in varying oxygen conditions, which is advantageous in dynamic aquatic environments where oxygen levels can fluctuate.↵↵Optimal growth for this strain occurs at a temperature of 20.0°C, suggesting a preference for temperate aquatic ecosystems. Given its ecological niche, V. vulnificus strain VA-WGS-18041 may play a role in the microbial dynamics of nutrient cycling within its habitat, particularly in warmer, shallow coastal waters. The ability to flourish under both aerobic and anaerobic conditions enables this bacterium to occupy diverse ecological roles, including those associated with the degradation of organic matter and interactions with other microbial communities. ↵↵Understanding the traits of V. vulnificus strain VA-WGS-18041 can provide insights into its ecological functions and adaptability, as well as its potential interactions with other organisms in its environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio vulnificus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles 672 RBZL00000000.1 Bac0019649 Cohnella endophytica strain M2MS4P-1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella endophytica 2419778 RBZM00000000.1 Bac0019650 Oceanobacillus bengalensis strain MCCC 1K00260 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus bengalensis 1435466 RBZO00000000.1 Bac0019651 Pararobbsia silviterrae strain DHC34 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pararobbsia Pararobbsia silviterrae 1792498 RBZU00000000.1 Bac0019652 Okeania hirsuta strain PAB10Feb10-1 PAB_NODE_716 Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Okeania Okeania hirsuta 1458930 RCBY00000000.1 Bac0019653 Flavobacterium lindanitolerans strain DSM 21886 "Flavobacterium lindanitolerans strain DSM 21886 is a Gram-negative, rod-shaped bacterium that is non-spore-forming and exhibits an aerobic metabolism. The strain thrives optimally at a temperature of 37.0°C, indicating a potential preference for mesophilic environments. ↵↵As a member of the Flavobacterium genus, F. lindanitolerans may possess traits typical of this group, such as the ability to degrade complex organic compounds, which aligns with their ecological role in nutrient cycling. The Gram-negative nature of this strain suggests a distinctive outer membrane structure, which may contribute to its adaptability in various environments, potentially influencing its interactions with other microorganisms and substrates.↵↵The aerobic requirement of F. lindanitolerans underscores its reliance on oxygen for growth and metabolism, which may limit its habitat to oxygen-rich environments. This trait could make it an important player in ecosystems where oxygen levels are sufficient, such as in surface waters or aerobic sediments.↵↵Moreover, the ability to thrive at 37.0°C suggests a possible association with warm-blooded hosts or environments influenced by such temperatures, pointing to intriguing avenues for future research into its ecological roles or interactions within microbial communities. Understanding these dynamics may provide insights into the functional diversity of the Flavobacterium genus and its contributions to ecological processes." Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium lindanitolerans Gram-negative rod motile aerobic 37 mesophilic non-spore-forming 428988 RCCB00000000.1 Bac0019654 Sulfurisoma sediminicola strain DSM 26916 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sterolibacteriaceae Sulfurisoma Sulfurisoma sediminicola anaerobic 1381557 RCCI00000000.1 Bac0019655 Pedobacter alluvionis strain DSM 19624 "Pedobacter alluvionis strain DSM 19624 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and is non-spore-forming. This strain thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler environments. The Gram-negative nature of P. alluvionis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group and may confer specific advantages in its ecological niche.↵↵Given its aerobic requirement, P. alluvionis is likely to be involved in processes that occur in oxygen-rich environments, where it may play a role in the degradation of organic matter. The non-spore-forming characteristic suggests that this strain may rely on other survival strategies, such as the ability to rapidly reproduce or form biofilms in response to environmental stresses.↵↵An interesting perspective on Pedobacter alluvionis strain DSM 19624 is its potential contribution to nutrient cycling in freshwater sediments or soil environments. Its optimal growth temperature aligns with conditions commonly found in temperate ecosystems, which may influence microbial community dynamics and interactions within its habitat. Such traits highlight the bacterium's role in maintaining ecological balance and enhancing soil health through the breakdown of organic materials, although further studies are needed to establish its specific ecological functions." Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter alluvionis Gram-negative rod non-motile aerobic 16 psychrotolerant non-spore-forming 475253 RCCK00000000.1 Bac0019656 Streptomyces sp. Z26 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Z26 2500177 RCHV00000000.1 Bac0019657 Escherichia coli strain NGE6 "Escherichia coli strain NGE6 is a Gram-negative, rod-shaped bacterium that commonly exhibits a cell arrangement of singles and pairs. This strain thrives optimally at 37.0°C, a temperature closely aligned with the average body temperature of warm-blooded hosts, suggesting a potential association with endothermic organisms. As a facultative anaerobe, E. coli strain NGE6 can grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within host-associated habitats.↵↵The ability of strain NGE6 to exist in pairs and singles may influence its interactions within the host environment, potentially affecting its metabolic pathways and ecological roles. The host-associated habitat indicates that this strain likely participates in complex microbial communities within the gastrointestinal tract or other host tissues, where it may play a role in nutrient cycling and maintaining homeostasis. The adaptability of E. coli strain NGE6 to different oxygen levels further underscores its ecological versatility, which may facilitate its survival and functionality in diverse host environments.↵↵These traits highlight the importance of E. coli strain NGE6 as a model organism for studying microbial ecology and host-microbe interactions, particularly in understanding the dynamics of microbial communities in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RCIE00000000.1 Bac0019658 Escherichia coli strain NGE5 "Escherichia coli strain NGE5 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, reflecting its adaptation to host-associated environments, where it may be found in association with a variety of organisms. As a facultative anaerobe, E. coli strain NGE5 possesses the metabolic flexibility to utilize both aerobic and anaerobic respiration, allowing it to survive in diverse oxygen conditions often encountered in host tissues.↵↵The ability to grow in pairs or as single cells may suggest a potential for varied interactions within host environments, which could influence its survival and adaptability. The physiological traits of E. coli strain NGE5, including its optimal growth temperature and metabolic versatility, position it as a significant player in microbial communities associated with host organisms. Understanding the specific ecological role of this strain could provide insights into its interactions within the microbiota, as well as its contributions to the overall functioning of microbial ecosystems. Further studies may elucidate its specific interactions with the host and other microbial inhabitants, enhancing our comprehension of host-associated microbial dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RCIF00000000.1 Bac0019659 Nocardia seriolae strain HSY-NS02 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia seriolae 37332 RCNK00000000.1 Bac0019660 Bacteroidetes/Chlorobi group bacterium Naka2016 Pseudomonadati Bacteroidetes/Chlorobi group bacterium Naka2016 2382229 RCNP00000000.1 Bac0019661 Streptomyces sp. CBMAI 2042 A979_AS2_SC3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CBMAI 2042 2305222 RCOL00000000.1 Bac0019662 Listeria monocytogenes strain FDA605850 74-5 "Listeria monocytogenes strain FDA605850 74-5 is a Gram-positive, rod-shaped bacterium known for its ability to form chains or exist as singles. This strain does not undergo sporulation, which distinguishes it from other bacterial species that utilize spores for survival under adverse conditions. L. monocytogenes FDA605850 74-5 is a chemoorganotroph, deriving its energy from organic compounds, and it demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. ↵↵The optimal growth temperature for this strain is 30.0°C, indicating a preference for moderate temperatures, which may reflect its adaptability to various ecological niches. The habitat of L. monocytogenes FDA605850 74-5 is described as multiple, suggesting that this bacterium can occupy diverse environments, potentially including both terrestrial and aquatic ecosystems. ↵↵The facultative anaerobic nature of this strain, coupled with its chemoorganotrophic lifestyle, enables it to exploit a range of organic substrates, thereby enhancing its ecological versatility. This adaptability may contribute to its persistence in various habitats, where it can compete effectively for nutrients. Understanding the growth characteristics and ecological preferences of L. monocytogenes strain FDA605850 74-5 is essential for predicting its behavior in different environments and assessing its interactions within microbial communities." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles Nonsporulating Human 1639 RCSC00000000.1 Bac0019663 Xanthobacter tagetidis strain ATCC 700314 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Xanthobacter Xanthobacter tagetidis 60216 RCTF00000000.1 Bac0019664 Geobacillus stearothermophilus strain FHS-PPGT130 "Geobacillus stearothermophilus strain FHS-PPGT130 is a Gram-variable, rod-shaped bacterium primarily found in active volcanic areas and in spoiled canned food. This strain is classified as an aerobe, indicating that it requires oxygen for its growth and metabolic processes. ↵↵The presence of G. stearothermophilus in extreme environments such as volcanic regions suggests its remarkable adaptability to high temperatures and potentially hostile conditions. This organism is well-known for its thermophilic properties, thriving in elevated temperatures, which may be linked to its ability to survive in the high heat often associated with volcanic activity. Moreover, its occurrence in spoiled canned food highlights its role in food spoilage processes, where it may contribute to the degradation of food quality under specific storage conditions.↵↵The unique combination of environments inhabited by strain FHS-PPGT130 underscores its ecological versatility and potential utility in biotechnology, particularly in processes that require thermophilic organisms. Understanding its metabolic capabilities could provide insights into its role in biogeochemical cycles in extreme habitats, thereby enhancing knowledge of microbial life in both natural and industrial contexts." Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus Variable Rod Aerobe thermophilic active volcanic area; spoiled canned food 1422 RCTJ00000000.1 Bac0019665 Vibrio anguillarum strain 030305-1/5 "Vibrio anguillarum strain 030305-1/5 is a Gram-negative, curved-shaped bacterium that exists as single cells and exhibits facultative anaerobic metabolism, utilizing a heterotrophic energy source. This strain is nonsporulating, indicating its reliance on vegetative growth for survival and reproduction. ↵↵As a host-associated microbe, V. anguillarum strain 030305-1/5 likely engages in interactions with its host organism, which may influence its ecological role within a given environment. The facultative nature of this bacterium allows it to adapt to varying oxygen conditions, suggesting a versatile metabolic capability that could be advantageous in fluctuating habitats. ↵↵Further exploration of this strain could provide insights into its specific interactions with host organisms and its potential roles in microbial communities, as well as its adaptations to different environmental conditions. Understanding these dynamics may illuminate the broader ecological implications of V. anguillarum within aquatic ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio anguillarum Negative CurvedShaped Yes Facultative Heterotroph Mesophilic HostAssociated Free living Singles Nonsporulating Animal 55601 RCUB00000000.1 Bac0019666 Mycetocola manganoxydans strain CCTCC AB209002 "Mycetocola manganoxydans strain CCTCC AB209002 is a Gram-positive, rod-shaped bacterium that exhibits aerobic metabolism and is characterized by its non-spore-forming nature. This strain thrives optimally at a temperature of 29.0°C, which suggests a preference for moderately warm environments. Its Gram-positive status indicates a thick peptidoglycan layer in the cell wall, a feature that may influence its susceptibility to certain antibiotics and environmental conditions.↵↵The aerobic requirement of Mycetocola manganoxydans implies that it relies on oxygen for its growth and energy production, which could limit its ecological niches to well-aerated environments. The absence of sporulation suggests that this strain may not have a mechanism for enduring extreme stress conditions, such as desiccation or nutrient depletion, thereby potentially restricting its survival during unfavorable periods.↵↵The specific combination of traits exhibited by Mycetocola manganoxydans strain CCTCC AB209002 may reflect adaptations to particular ecological niches where oxygen is plentiful and temperatures are moderate, promoting its growth and metabolic activities. Understanding these traits can provide insights into its ecological roles, such as potential contributions to biogeochemical cycles in its native habitat, where aerobic conditions prevail." Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola manganoxydans Gram-positive rod non-motile aerobic 29 mesophilic non-spore-forming 699879 RCUV00000000.1 Bac0019667 Mycetocola tolaasinivorans strain IF 016277 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola tolaasinivorans 29 mesophilic 76635 RCUX00000000.1 Bac0019668 Acinetobacter baumannii strain LWSS- 03-02-11A "Acinetobacter baumannii strain LWSS-03-02-11A is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotroph, indicating that it relies on organic compounds for energy and carbon. It thrives optimally at a temperature of 37.0°C, which is consistent with the human body temperature, suggesting a potential association with mammalian hosts. ↵↵As an aerobic organism, A. baumannii strain LWSS-03-02-11A requires oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. The versatility of this strain is highlighted by its capability to inhabit multiple ecological niches, which may include diverse terrestrial and aquatic environments. ↵↵The ability of Acinetobacter species, including strain LWSS-03-02-11A, to adapt to various habitats and their metabolic flexibility underscores their ecological significance. This adaptability may contribute to their role in biogeochemical cycling and their interactions within microbial communities. Understanding the specific traits of this strain can provide insights into its ecological functions and potential applications in biotechnology or environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 RCUZ00000000.1 Bac0019669 Acinetobacter baumannii strain LWSS- 03-02-11B "Acinetobacter baumannii strain LWSS-03-02-11B is a Gram-negative, rod-shaped bacterium that typically occurs as single cells and demonstrates an aerobic metabolism. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions often found in mammalian hosts. As a chemoheterotroph, A. baumannii strain LWSS-03-02-11B derives its energy from organic compounds, reflecting its adaptive capabilities to utilize diverse substrates in various habitats.↵↵The ecological versatility of A. baumannii is underscored by its ability to inhabit multiple environments, which may include both natural and anthropogenic settings. This adaptability is significant in understanding its role in microbial communities, particularly in relation to nutrient cycling and competition for resources. The strain's aerobic nature indicates a reliance on oxygen for growth, suggesting a potential niche in environments where oxygen is available, such as soil or aquatic systems.↵↵The combination of its morphological characteristics, metabolic capabilities, and environmental adaptability positions Acinetobacter baumannii strain LWSS-03-02-11B as an important subject for further investigation. Understanding its ecological interactions and energy acquisition strategies may provide insights into its role in broader microbial ecosystems and potential implications for environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 RCVA00000000.1 Bac0019670 Micromonospora sp. CV4 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. CV4 2478711 RCVI00000000.1 Bac0019671 Falsibacillus albus strain GY 10110 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Falsibacillus Falsibacillus albus 2478915 RCVZ00000000.1 Bac0019672 Planomicrobium sp. Y74 37 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planomicrobium Planomicrobium sp. Y74 2478977 RCWH00000000.1 Bac0019673 Alistipes finegoldii strain aa_0143 "Alistipes finegoldii strain aa_0143 is a Gram-negative, anaerobic bacterium that is part of the diverse microbial community found in the human gut. This strain is characterized by its inability to thrive in the presence of oxygen, indicating its adaptation to anaerobic environments typical of intestinal habitats. Its Gram-negative status suggests a complex cell wall structure, which may influence its interactions with other microbial species as well as its resistance to certain antimicrobial agents.↵↵The anaerobic nature of Alistipes finegoldii strain aa_0143 positions it as a key player in the fermentation processes occurring within the gut microbiome, contributing to the breakdown of complex carbohydrates and other organic materials. Such metabolic activities are crucial for maintaining gut health and influencing host metabolism. ↵↵Research into the specific roles of Alistipes species, including strain aa_0143, has indicated potential implications in human health, particularly in relation to metabolic and immune functions. Further investigation into this strain could elucidate its contributions to gut homeostasis and its interactions with both the host and other members of the gut microbiota. Understanding these dynamics may provide insights into the broader ecological roles of anaerobic bacteria in human health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes finegoldii Negative Anaerobe 214856 RCXA00000000.1 Bac0019674 Bacteroides caccae strain bj_0095 "Bacteroides caccae strain bj_0095 is a Gram-negative, anaerobic bacterium characterized by its ability to thrive in oxygen-deprived environments. As a member of the Bacteroides genus, this strain exhibits the typical metabolic pathways associated with anaerobic bacteria, likely relying on fermentation processes for energy production. ↵↵Bacteroides species are commonly found in the gastrointestinal tracts of humans and other animals, where they play a crucial role in the digestion of complex polysaccharides and the maintenance of gut health. The anaerobic nature of strain bj_0095 suggests its adaptation to the low-oxygen conditions typically present in the intestines, where it may contribute to the diverse microbiome and influence host metabolism.↵↵Given the ecological context of Bacteroides caccae, it is plausible that strain bj_0095 engages in symbiotic relationships with its host, aiding in nutrient absorption and potentially modulating immune responses. This relationship underscores its importance in the gut ecosystem, where it may help in maintaining microbial balance and supporting overall health. Further studies could elucidate the specific contributions of Bacteroides caccae strain bj_0095 to gut function and its interactions with other microbial inhabitants." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caccae Negative Anaerobe 47678 RCXH00000000.1 Bac0019675 Bacteroides intestinalis strain bf_0095 "Bacteroides intestinalis strain bf_0095 is a Gram-negative, anaerobic bacterium that plays a significant role in the microbiota of the intestinal tract. As a member of the Bacteroides genus, it is characterized by its inability to thrive in the presence of oxygen, which distinguishes it from many other bacterial species. This anaerobic nature indicates that B. intestinalis strain bf_0095 likely engages in fermentation processes, utilizing organic compounds found in its environment to generate energy.↵↵The Gram-negative classification of this strain is indicative of its cell wall structure, which consists of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature can contribute to the bacterium's resilience in the anaerobic conditions of the intestines. ↵↵The presence of Bacteroides species, including strain bf_0095, is essential for maintaining gut health, as they are involved in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are beneficial for host metabolism and immune function. Moreover, the specific metabolic pathways utilized by this strain may help in understanding its interactions with other gut microbiota and its overall contribution to the gut ecosystem. Given its anaerobic characteristics, Bacteroides intestinalis strain bf_0095 may also provide insights into the adaptation mechanisms of gut bacteria in oxygen-limited environments, highlighting the intricate balance of microbial communities within the human digestive system." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides intestinalis Negative Anaerobe 329854 RCXO00000000.1 Bac0019676 Bacteroides ovatus strain am_0171 "Bacteroides ovatus strain am_0171 is a Gram-negative, anaerobic bacterium primarily inhabiting the gut microbiota. This strain, part of the Bacteroides genus, is adapted to thrive in low-oxygen environments, which is characteristic of the gastrointestinal tract where it plays a crucial role in the fermentation of complex carbohydrates. ↵↵The anaerobic nature of Bacteroides ovatus strain am_0171 suggests its involvement in various metabolic processes, particularly in the breakdown of dietary fibers and the production of short-chain fatty acids, which are essential for gut health and host metabolism. The presence of this strain in the gut microbiome underscores the importance of Bacteroides species in maintaining a balanced microbial community and supporting nutrient absorption.↵↵Additionally, the specific adaptations of Bacteroides ovatus strain am_0171 to anaerobic conditions may provide insights into its functional ecology within the gut ecosystem, potentially influencing overall gut health and the host's immune response. Understanding the traits of this strain can contribute to a broader comprehension of the complex interactions within gut microbiomes and their implications for human health." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides ovatus Negative Anaerobe gut 28116 RCXR00000000.1 Bac0019677 Bacteroides stercoris strain am_0070 "Bacteroides stercoris strain am_0070 is a Gram-negative anaerobic bacterium known for its role in the gastrointestinal microbiota of various hosts. As a member of the Bacteroides genus, strain am_0070 exhibits typical traits associated with anaerobic metabolism, thriving in environments devoid of oxygen. This strain is likely involved in the breakdown of complex polysaccharides, contributing to the fermentation processes that yield short-chain fatty acids, which can have beneficial effects on host health.↵↵The Gram-negative nature of Bacteroides stercoris strain am_0070 indicates the presence of a thin peptidoglycan layer and an outer membrane, which may contribute to its resilience in the competitive gut environment. This structural characteristic is essential for its survival against various physical and chemical stressors present in the gastrointestinal tract.↵↵Given its anaerobic requirement, Bacteroides stercoris strain am_0070 may play a crucial role in maintaining the balance of microbial communities in the gut by outcompeting oxygen-dependent microorganisms and facilitating an ecosystem conducive to other anaerobes. This competitive advantage underscores the importance of anaerobic bacteria in gut ecology, highlighting their potential contributions to metabolic processes and overall host well-being. Further research into the specific metabolic capabilities and interactions of strain am_0070 could provide deeper insights into its ecological significance and functional roles within the gut microbiome." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides stercoris Negative Anaerobe 46506 RCXV00000000.1 Bac0019678 Bacteroides uniformis strain ca_0067 "Bacteroides uniformis strain ca_0067 is a Gram-negative anaerobic bacterium that resides predominantly in the gastrointestinal tract, specifically within the gut luminal niche of various hosts. This microbe is characterized by its ability to thrive in an oxygen-free environment, which aligns with its classification as an anaerobe. ↵↵Bacteroides uniformis, like other members of the Bacteroides genus, plays a critical role in the gut microbiota, contributing to the complex ecosystem of the intestinal tract. Its ability to ferment complex carbohydrates and produce short-chain fatty acids may have implications for host metabolism and overall gut health. The presence of such bacteria is essential for the maintenance of gut homeostasis and may influence various physiological processes, including immune response and nutrient absorption.↵↵In summary, Bacteroides uniformis strain ca_0067 exemplifies the diversity of anaerobic bacteria in the gut and underscores the importance of microbial inhabitants in shaping host health through metabolic interactions. Further research into this strain could provide insights into its specific functional contributions within the gut microbiome and its potential roles in health and disease." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides uniformis Negative Anaerobe gastrointestinal tract; gut; gut luminal niche; intestinal tract 820 RCXX00000000.1 Bac0019679 Citrobacter amalonaticus strain ca_0067 "Citrobacter amalonaticus strain ca_0067 is a Gram-negative bacterium that resides predominantly in the gut environment. This strain exhibits facultative anaerobic characteristics, allowing it to thrive in both aerobic and anaerobic conditions. This adaptability enhances its survival and metabolic versatility within the diverse microbial community of the gastrointestinal tract.↵↵As a member of the Citrobacter genus, C. amalonaticus is noteworthy for its ability to ferment various carbohydrates, which contributes to its ecological role in the gut microbiome. Its presence may play a role in the fermentation processes that are crucial for nutrient absorption and the maintenance of gut health. The ability to inhabit the gut suggests that C. amalonaticus strain ca_0067 may participate in complex interactions with other gut microbes, potentially influencing the overall metabolic activities and homeostasis of the intestinal ecosystem.↵↵The facultative anaerobic nature of Citrobacter amalonaticus strain ca_0067 also implies a potential resilience to fluctuating oxygen levels in the gut, which can vary significantly due to dietary changes and host physiology. This adaptability underscores the importance of C. amalonaticus in microbial succession and stability in the gut microbiota, contributing to our understanding of microbial dynamics in health and disease. Thus, the ecological role of this strain highlights its potential significance within the intricate balance of gut microbiome interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter amalonaticus Negative Facultative anaerobe gut 35703 RCYA00000000.1 Bac0019680 Catenibacterium sp. co_0103 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Catenibacterium Catenibacterium sp. co_0103 2478954 RCYB00000000.1 Bac0019681 Eubacterium ramulus strain aa_0143 "Eubacterium ramulus strain aa_0143 is a Gram-positive anaerobic bacterium distinguished by its ability to thrive in oxygen-depleted environments. As a member of the Eubacterium genus, this strain exemplifies typical characteristics associated with anaerobic metabolism, implying that it does not require oxygen for growth and may even be inhibited by its presence. ↵↵The Gram-positive nature of Eubacterium ramulus strain aa_0143 suggests a thick peptidoglycan layer in its cell wall, which is a common feature among many bacteria in this group. This structural characteristic not only provides the bacterium with rigidity and protection but also plays a role in its interactions within microbial communities and its resilience in various habitats.↵↵The anaerobic lifestyle of Eubacterium ramulus strain aa_0143 indicates its potential role in environments such as the gastrointestinal tract of mammals, where low oxygen levels prevail. In such ecosystems, Gram-positive anaerobes can contribute to the complex microbial dynamics and metabolic processes, including fermentation and nutrient cycling. ↵↵The specific traits of Eubacterium ramulus strain aa_0143 highlight its ecological adaptations, which may facilitate its involvement in maintaining microbial diversity and stability within anaerobic niches, thereby supporting overall ecosystem health. Further research could unveil additional roles this strain may play in its natural habitat, particularly regarding its contributions to the microbiome and its interactions with other microbial species." Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium ramulus Positive Anaerobe 39490 RCYH00000000.1 Bac0019682 Faecalibacterium prausnitzii strain aa_0143 "Faecalibacterium prausnitzii strain aa_0143 is a Gram-positive, nonsporulating rod-shaped bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 37.0°C. As a chemoheterotroph, this strain utilizes organic compounds as its energy source, reflecting its adaptation to various habitats, likely including the gastrointestinal tracts of mammals.↵↵The anaerobic nature of F. prausnitzii strain aa_0143 suggests a specialized role in microbial communities, particularly in environments where oxygen is limited. Its ability to flourish in multiple habitats indicates a versatile ecological niche, possibly contributing to the maintenance of gut health through its metabolic activities. This bacterium is known to participate in the fermentation of dietary fibers, which can lead to the production of short-chain fatty acids, important for colonic health and host metabolism.↵↵The presence of F. prausnitzii strain aa_0143 may be indicative of a balanced microbial ecosystem, as it is often associated with beneficial effects in the gut microbiota. Understanding this strain's metabolic pathways and ecological interactions could provide insights into its role in health and disease, particularly in relation to gut microbiome stability and functionality." Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Faecalibacterium Faecalibacterium prausnitzii Positive Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 853 RCYJ00000000.1 Bac0019683 [Ruminococcus] torques strain aa_0143 "[Ruminococcus] torques strain aa_0143 is a Gram-positive, anaerobic coccus that is part of the diverse microbiota found in the gastrointestinal tract. This strain exhibits a spherical shape, which is typical of cocci, and thrives in environments devoid of oxygen, indicating its adaptation to anaerobic conditions prevalent in the intestines of various hosts. ↵↵As an anaerobe, [Ruminococcus] torques strain aa_0143 contributes to the fermentation processes within the gut, potentially aiding in the breakdown of complex carbohydrates and the production of short-chain fatty acids, which are important for host metabolism and health. The presence of this strain in the gut microbiome may influence the overall microbial community structure and function, reflecting its role in maintaining gut homeostasis.↵↵Additionally, the ability of [Ruminococcus] torques strain aa_0143 to survive and proliferate in anaerobic environments may provide insights into its ecological strategies for colonization and adaptation within the host. Understanding the specific metabolic pathways and interactions of this strain could be key to elucidating its contributions to gut health and its potential influence on host immune responses." Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter torques Positive Cocci Anaerobe 33039 RCYR00000000.1 Bac0019684 Streptococcus salivarius strain bf_0095 "Streptococcus salivarius strain bf_0095 is a Gram-positive coccus that typically appears in chains or pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a member of the Streptococcus genus, it is associated with host organisms, indicating a potential symbiotic relationship within its ecological niche.↵↵The presence of S. salivarius in the oral cavity is particularly noteworthy, as it is commonly found in the human microbiome, where it plays a role in maintaining oral health. Its capability to adapt to varying oxygen levels may contribute to its resilience in diverse microenvironments within the host. Furthermore, this strain's nonsporulating nature suggests a reliance on stable environments for survival, contrasting with spore-forming bacteria that can endure harsher conditions.↵↵The unique combination of traits exhibited by S. salivarius strain bf_0095 underscores its potential importance in the host-associated microbiota, particularly in the modulation of oral microbial communities and possibly influencing host immune responses. Future research may elucidate its specific functions and interactions within the microbiome, enhancing our understanding of its ecological role in health and disease." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 RCYT00000000.1 Bac0019685 Escherichia coli strain CFQJ051 "Escherichia coli strain CFQJ051 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting a close association with warm-blooded hosts. E. coli strains are known for their facultative anaerobic metabolism, allowing them to utilize oxygen when available while also being capable of surviving in anaerobic conditions. ↵↵The host-associated habitat of strain CFQJ051 indicates a potential symbiotic relationship with its host, possibly contributing to gut microbiota composition and functionality. Such relationships are essential for nutrient absorption and the maintenance of intestinal health. The adaptability of this strain to varying oxygen levels may also enhance its survival in the dynamic environments of the gastrointestinal tract, where oxygen concentration can fluctuate significantly.↵↵Furthermore, the existence of E. coli in pairs or as single cells may reflect its adaptability to different microenvironments within the host, potentially facilitating its role in microbial community interactions. The ecological insights provided by strain CFQJ051 highlight the complexity of microbial life within host-associated habitats and the importance of studying specific strains to understand their unique roles in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RDDG00000000.1 Bac0019686 Escherichia coli strain CMJH98b "Escherichia coli strain CMJH98b is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the normal body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli CMJH98b is classified as a facultative anaerobe, indicating that it can grow in both aerobic and anaerobic environments, a trait that enhances its survival within diverse ecological niches, including the gastrointestinal tract of its hosts.↵↵The ability to thrive in varying oxygen conditions allows E. coli CMJH98b to participate in metabolic processes that can be beneficial in its host environment, potentially influencing nutrient absorption and microbial community dynamics. The association of this strain with host organisms highlights its potential role in the complex interactions between the microbiome and host physiology. Further studies could illuminate how E. coli strain CMJH98b interacts with other microbial species in its habitat, contributing to our understanding of microbial ecology within host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RDDM00000000.1 Bac0019687 Escherichia coli strain CMSX59b "Escherichia coli strain CMSX59b is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which suggests a versatile metabolic capacity. E. coli strain CMSX59b exhibits optimal growth at 37.0°C, a temperature that aligns with the physiological conditions of the mammalian host, where it is predominantly found.↵↵As a host-associated microbe, E. coli strain CMSX59b likely plays a role in various host-associated processes, potentially including nutrient absorption and gut microbiota modulation. The ability to exist in pairs or singles may also facilitate its adaptation to different microenvironments within the host, contributing to its survival and functionality. Understanding the specific interactions of this strain within its habitat may shed light on its ecological role and contributions to host health or disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RDDQ00000000.1 Bac0019688 Parapedobacter sp. Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Parapedobacter Parapedobacter sp. 1958893 RDDX00000000.1 Bac0019689 Kocuria tytonicola strain 473 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria tytonicola 2055946 RDEX00000000.1 Bac0019690 Halorientalis pallida strain F13-25 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis pallida 2479928 RDFA00000000.1 Bac0019691 Acinetobacter sp. 2JN-4 ZB100040 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. 2JN-4 2479844 RDNY00000000.1 Bac0019692 Enterobacter bugandensis strain UENF-21GII "Enterobacter bugandensis strain UENF-21GII is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism, thriving optimally at a temperature of 37.0°C. This combination of traits indicates its adaptability to varying oxygen levels, allowing it to survive in diverse environments that may fluctuate between aerobic and anaerobic conditions. ↵↵As a member of the Enterobacter genus, this strain may play a role in nutrient cycling and interactions within microbial communities. The ability to grow in both the presence and absence of oxygen suggests that Enterobacter bugandensis strain UENF-21GII could be involved in various ecological processes, such as organic matter decomposition and fermentation, particularly in environments where oxygen availability is inconsistent. ↵↵Further investigation into the metabolic pathways and ecological roles of Enterobacter bugandensis strain UENF-21GII could reveal its significance in specific habitats, potentially contributing to biogeochemical cycles in soil or water systems. Understanding the physiological capabilities of this strain may also provide insights into its interactions with other microbial species and its potential functions in microbial ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter bugandensis Gram-negative rod facultative aerobe/anaerobe 37 mesophilic 881260 RDOI00000000.1 Bac0019693 Faecalibacter macacae strain YIM 102668 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Faecalibacter Faecalibacter macacae 1859289 RDOJ00000000.1 Bac0019694 Bradyrhizobium vignae strain LMG 28791 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium vignae 1549949 RDQF00000000.1 Bac0019695 Allofranklinella schreckenbergeri strain NML 161473 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Allofranklinella Allofranklinella schreckenbergeri 1076744 RDQL00000000.1 Bac0019696 Marinifilum sp. JC120 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Marinifilum Marinifilum sp. JC120 2302941 RDSB00000000.1 Bac0019697 Granulicella sibirica strain AF10 Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella sibirica 2479048 RDSM00000000.1 Bac0019698 Vibrio sp. SBT000027 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. SBT000027 1803384 REBK00000000.1 Bac0019699 Umboniibacter marinipuniceus strain DSM 25080 "Umboniibacter marinipuniceus strain DSM 25080 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This strain belongs to a group of marine bacteria, which often play significant roles in nutrient cycling within their ecosystems. The rod morphology is characteristic of many bacteria within aquatic environments, where such shapes may confer advantages in motility or surface attachment.↵↵As a Gram-negative organism, Umboniibacter marinipuniceus features a thin peptidoglycan layer, situated between an inner and an outer membrane, which can influence its interactions with other microorganisms and its resistance to certain environmental stresses. The aerobic nature of this strain suggests that it relies on oxygen for its metabolic processes, potentially utilizing various organic compounds as substrates for growth and energy production.↵↵The preference for an optimal growth temperature of 25.0°C indicates that Umboniibacter marinipuniceus is well-adapted to temperate marine environments, potentially contributing to the microbial diversity and functionality of such habitats. This adaptation may reflect its ability to participate in biogeochemical cycles, particularly in the degradation of organic matter in marine ecosystems. Understanding the traits of this bacterium can provide insights into its ecological role and the dynamics of microbial communities in marine environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Umboniibacter Umboniibacter marinipuniceus Gram-negative rod non-motile aerobic 25 mesophilic 569599 REFJ00000000.1 Bac0019700 Rhodococcus sp. SBT000017 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. SBT000017 1803385 REFU00000000.1 Bac0019701 Natrarchaeobius halalkaliphilus strain AArcht-Sl Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobius Natrarchaeobius halalkaliphilus 1679091 REFY00000000.1 Bac0019702 Corynebacterium macginleyi strain NML 120205 NML120205_42 "Corynebacterium macginleyi strain NML 120205 NML120205_42 is a Gram-positive, rod-shaped bacterium characterized by its microaerophilic oxygen requirement and inability to form spores. Optimal growth of this strain occurs at a temperature of 37.0 °C, indicating a preference for conditions that mimic the temperature of the human body, which is typical for many members of the Corynebacterium genus. ↵↵This strain’s Gram-positive nature suggests a thick peptidoglycan layer in its cell wall, a feature often associated with various physiological and biochemical properties that can influence its survival and interaction with other microorganisms. Its microaerophilic requirement indicates that it thrives in environments with reduced oxygen levels, which may limit its exposure to oxidative stress while still allowing for aerobic respiration.↵↵Understanding the growth conditions and physiological traits of Corynebacterium macginleyi strain NML 120205 NML120205_42 may provide insights into its ecological role, particularly in environments where oxygen levels fluctuate. This adaptation to microaerophilic conditions could suggest a niche specialization that allows it to coexist with other microbial communities, potentially contributing to the metabolic activities within those ecosystems. Further investigation into its interactions and functional roles in microbial consortia would enhance our understanding of its ecological significance." Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium macginleyi Gram-positive rod non-motile microaerophile 37 mesophilic non-spore-forming 38290 REGC00000000.1 Bac0019703 Lactobacillus sp. ESL0262 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0262 2069349 REHM00000000.1 Bac0019704 Lactobacillus sp. ESL0261 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0261 2069348 REHN00000000.1 Bac0019705 Lactobacillus sp. ESL0260 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0260 2069347 REHO00000000.1 Bac0019706 Lactobacillus sp. ESL0259 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. ESL0259 2069346 REHP00000000.1 Bac0019707 Acinetobacter baumannii strain TG31977 "Acinetobacter baumannii strain TG31977 is a Gram-negative, rod-shaped bacterium that predominantly exists as single cells. This strain thrives optimally at a temperature of 37.0 °C, indicating its potential adaptability to human-associated environments or other warm niches. As a chemoheterotroph, A. baumannii strain TG31977 utilizes organic compounds as its energy source, reflecting its metabolic versatility and ability to occupy various ecological niches.↵↵The aerobic nature of this strain suggests that it requires oxygen for growth, which is a significant trait that influences its habitat selection and interactions with other microorganisms. Given the ability of A. baumannii species to inhabit multiple environments, including clinical settings, soil, and water, strain TG31977 likely plays a role in nutrient cycling and microbial community dynamics within these habitats.↵↵Overall, the traits of A. baumannii strain TG31977 highlight its ecological flexibility and potential contributions to both environmental and clinical microbiomes. This adaptability may allow the strain to exploit diverse resources, positioning it as a significant player in the interactions that shape microbial communities in various ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 RFAY00000000.1 Bac0019708 Acinetobacter baumannii strain TG28175 "Acinetobacter baumannii strain TG28175 is a Gram-negative, rod-shaped bacterium that primarily exists as single cells. This strain is classified as a chemoheterotroph, utilizing organic compounds as its energy source, and it thrives in aerobic conditions. Optimal growth occurs at a temperature of 37.0°C, which is consistent with the temperature range found in many human-associated environments.↵↵Acinetobacter baumannii is known for its remarkable versatility in habitat, adapting to various ecological niches, including both natural and anthropogenic environments. This adaptability may contribute to its persistence in healthcare settings, where it can survive on surfaces and in diverse biological fluids. The strain's aerobic metabolism likely plays a crucial role in its survival in oxygen-rich environments, further enhancing its ability to colonize and persist in various ecological contexts.↵↵The adaptability of Acinetobacter baumannii strain TG28175 to multiple habitats, coupled with its metabolic capabilities, underscores its potential role in biogeochemical cycles, particularly in environments impacted by human activity. Understanding the ecological dynamics of this strain could provide insights into its interactions within microbial communities and its responses to environmental changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 RFDI00000000.1 Bac0019709 Acinetobacter baumannii strain TG41016 "Acinetobacter baumannii strain TG41016 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain is classified as a chemoheterotroph, utilizing organic compounds as its energy source, and is capable of thriving in a variety of habitats, indicating a broad ecological niche. Optimal growth for strain TG41016 occurs at 37.0°C, which aligns with the temperature conditions commonly found in human-associated environments. ↵↵As an obligate aerobe, A. baumannii strain TG41016 requires oxygen for its metabolic processes, which may influence its distribution in environments where oxygen levels are variable. The ability of this strain to adapt to multiple habitats suggests a potential for resilience in diverse ecological settings, possibly including clinical environments where it can be found in association with human hosts or in soil and water. ↵↵Overall, the ecological versatility of A. baumannii strain TG41016, combined with its specific temperature and oxygen requirements, may play a critical role in its survival and persistence across different environments, underscoring the importance of studying its ecological and biological behaviors in both natural and anthropogenic contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 RFDJ00000000.1 Bac0019710 Acinetobacter baumannii strain TG89524 "Acinetobacter baumannii strain TG89524 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives optimally at a temperature of 37.0°C. As a chemoheterotrophic organism, it utilizes organic compounds as its energy source, indicating its reliance on various organic materials for growth and metabolism. This strain is classified as an aerobe, meaning it requires oxygen for its metabolic processes.↵↵The habitat of A. baumannii strain TG89524 is noted to be diverse, suggesting that this organism can adapt to various environmental conditions and possibly occupy multiple ecological niches. This adaptability may contribute to its survival in different environments, including those associated with human activity and various ecosystems. Understanding the specific habitats and conditions that favor the growth of this strain could provide insights into its ecological interactions and potential roles within microbial communities. Given its characteristics, A. baumannii strain TG89524 exemplifies the resilience and metabolic versatility often observed in members of the Acinetobacter genus, which are frequently isolated from both clinical settings and natural environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 RFDM00000000.1 Bac0019711 Acinetobacter haemolyticus strain TG41244 "Acinetobacter haemolyticus strain TG41244 is a Gram-negative bacterium recognized for its aerobic metabolic requirements. As a member of the Acinetobacter genus, this strain demonstrates the characteristic morphological and physiological traits typical of Gram-negative organisms, including a thin peptidoglycan layer surrounded by an outer membrane. The strain’s aerobic nature indicates its dependence on oxygen for growth and energy production, positioning it within environments where oxygen is readily available.↵↵The genus Acinetobacter is known for its resilience in various environments, and A. haemolyticus strain TG41244 may exhibit similar adaptive capabilities. While specific ecological niches or interactions of this strain have not been detailed, members of this genus are often found in soil and water, as well as in clinical settings. The ability to thrive in aerated conditions suggests that A. haemolyticus strain TG41244 could play a role in nutrient cycling or in the degradation of organic material in its habitat, potentially influencing microbial community dynamics.↵↵Overall, the traits of Acinetobacter haemolyticus strain TG41244 highlight its adaptability as an aerobe, underscoring the importance of oxygen availability in its ecological interactions and potential roles within microbial ecosystems. Further study of this strain could provide insights into its ecological contributions and metabolic pathways, enhancing our understanding of Gram-negative, aerobic microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 RFEF00000000.1 Bac0019712 Acinetobacter lactucae strain TG41018 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lactucae 1785128 RFES00000000.1 Bac0019713 Acinetobacter pittii strain TG41230 "Acinetobacter pittii strain TG41230 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C and is classified as a chemoheterotrophic aerobe, requiring oxygen for its metabolic processes while utilizing organic compounds as its energy source. ↵↵The versatile habitat of A. pittii strain TG41230 suggests that it can adapt to a variety of environmental conditions, highlighting its potential for survival in diverse ecological niches. Its chemoheterotrophic nature indicates a reliance on complex organic materials, which may allow this microbe to occupy habitats rich in decaying matter or in association with other organisms that produce organic substrates.↵↵This adaptability may confer ecological advantages, enabling A. pittii strain TG41230 to play a role in nutrient cycling within its environment. Understanding its metabolic capabilities and environmental resilience can provide insights into the ecological dynamics of microbial communities in which this strain is found." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter pittii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles 48296 RFET00000000.1 Bac0019714 Acinetobacter ursingii strain TG29426 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter ursingii 108980 RFFA00000000.1 Bac0019715 Cellulomonas triticagri strain NEAU-YY56 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas triticagri 2483352 RFFI00000000.1 Bac0019716 Streptomyces triticirhizae strain NEAU-YY642 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces triticirhizae 2483353 RFFJ00000000.1 Bac0019717 Solilutibacter pythonis strain 4284/11 74_533_70.4951 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Solilutibacter Solilutibacter pythonis 2483112 RFLY00000000.1 Bac0019718 Leptolyngbya sp. IPPAS B-1204 Mongol_rep_c3761 Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. IPPAS B-1204 2483801 RHGL00000000.1 Bac0019719 Porphyrobacter sp. IPPAS B-1204 Mongol_c3139 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. IPPAS B-1204 2483793 RHGM00000000.1 Bac0019720 Marinobacter sp. R17 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter sp. R17 2484250 RHGZ00000000.1 Bac0019721 Altererythrobacter sp. FM1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Altererythrobacter Altererythrobacter sp. FM1 2484537 RHHA00000000.1 Bac0019722 Empedobacter falsenii strain WF_348 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter falsenii aerobic 343874 RHPO00000000.1 Bac0019723 Pseudomonas sp. s199 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. s199 2479850 RHQQ00000000.1 Bac0019724 Pseudomonas sp. p106 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. p106 2479854 RHQR00000000.1 Bac0019725 Pseudomonas sp. p99-361 strain p99 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. p99-361 2479852 RHQS00000000.1 Bac0019726 Stutzerimonas stutzeri strain PS_167 "Stutzerimonas stutzeri strain PS_167 is a Gram-negative, rod-shaped bacterium that occurs as single cells and functions as a heterotrophic organism. This strain is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. Stutzerimonas stutzeri is typically found in host-associated habitats, suggesting a potential association with specific organisms that may provide a niche for its growth and survival.↵↵The heterotrophic nature of strain PS_167 implies that it utilizes organic compounds as its energy source, which may play a role in nutrient cycling within its ecological context. The aerobic requirement further suggests that the strain may participate in processes that involve oxygen consumption, potentially influencing the dynamics of its associated habitat.↵↵Understanding the ecological role of Stutzerimonas stutzeri strain PS_167 within host-associated environments could provide insights into microbial interactions and the overall health of the host organisms. The specific adaptations of this strain to its aerobic and heterotrophic lifestyle may also highlight the importance of microbial diversity in maintaining ecosystem stability and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 RHRC00000000.1 Bac0019727 Providencia rettgeri strain PR_162 16 "Providencia rettgeri strain PR_162 16 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic characteristics and primarily relies on a chemoheterotrophic metabolism for energy. This strain thrives optimally at a temperature of 37°C, indicating a potential adaptation to mammalian hosts or environments with similar thermal conditions. ↵↵As a nonsporulating organism, P. rettgeri strain PR_162 16's survival mechanisms may involve alternative strategies, such as biofilm formation or the production of protective extracellular substances, which are common among bacteria in diverse habitats. The ability to inhabit multiple environments suggests that this strain may possess a versatile metabolic repertoire, allowing it to utilize a range of organic compounds as substrates. ↵↵These traits position P. rettgeri strain PR_162 16 within a broader ecological context, where its adaptability could play a significant role in nutrient cycling and microbial community dynamics. Its facultative anaerobic nature may facilitate growth in fluctuating oxygen conditions, further enhancing its ecological resilience and potential involvement in various biogeochemical processes. Understanding the specific interactions and roles of this strain within its habitats could provide valuable insights into the ecological functions of the Providencia genus in microbiological and environmental studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 587 RHRR00000000.2 Bac0019728 Pseudomonas luteola strain PL_137 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas luteola 47886 RHRV00000000.1 Bac0019729 Pandoraea apista strain PA_201 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea apista 93218 RHSG00000000.1 Bac0019730 Atlantibacter subterranea strain AS_373 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Atlantibacter Atlantibacter subterraneus 255519 RHXB00000000.1 Bac0019731 Acinetobacter johnsonii strain AJ_385 "Acinetobacter johnsonii strain AJ_385 is a Gram-negative bacterium characterized by its aerobic metabolism and has been identified in specific habitats such as the ATCC skin microbiome and guano. As a member of the Acinetobacter genus, this strain exhibits typical traits of environmental resilience and adaptability, often thriving in diverse ecological niches. Its presence in the skin microbiome suggests a role in microbial community dynamics, potentially contributing to the maintenance of skin health and homeostasis. ↵↵The isolation of strain AJ_385 from guano indicates its capacity to survive in nutrient-rich environments, which may facilitate its role in nutrient cycling within these ecosystems. Furthermore, the aerobe classification of this strain suggests it relies on oxygen for growth, which may influence its interactions with other microorganisms and its overall ecological function. ↵↵Understanding the specific functions and interactions of Acinetobacter johnsonii strain AJ_385 within its habitats could provide insights into microbial diversity and ecosystem health, particularly in environments where it coexists with various other microbial species. The adaptability of this strain to different habitats underscores its potential importance in microbial ecology and the intricate relationships that govern microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii Negative Aerobe ATCC skin microbiome; guano 40214 RHXE00000000.1 Bac0019732 Acinetobacter junii strain AJ_356 "Acinetobacter junii strain AJ_356 is a Gram-negative bacterium characterized by its aerobic metabolism. This strain exhibits the typical morphological and physiological traits associated with the Acinetobacter genus, which includes a robust ability to survive in various environments. Being an aerobe, A. junii strain AJ_356 relies on oxygen for its growth and metabolic processes, indicating its adaptation to oxygen-rich habitats where it can thrive.↵↵The Gram-negative nature of this strain suggests a unique cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with other microorganisms and its resistance to certain antibiotics. Such traits are particularly relevant to understanding the strain’s potential role in various ecological niches, including soil and aquatic environments, where it may contribute to nutrient cycling and microbial community dynamics.↵↵Moreover, the aerobic lifestyle of A. junii strain AJ_356 may confer advantages in environments where oxygen is readily available, potentially facilitating its role in bioremediation processes or its participation in the degradation of organic compounds. Future research may further elucidate its ecological functions and interactions within microbial ecosystems, expanding our understanding of the diverse roles Acinetobacter species play in both natural and human-affected environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 RHXF00000000.1 Bac0019733 Achromobacter denitrificans strain AD_173 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter denitrificans aerobic 32002 RHXL00000000.1 Bac0019734 Planococcus salinus strain LCB217 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus salinus 1848460 RIAX00000000.1 Bac0019735 Muribaculaceae bacterium Isolate-042 (Harlan) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-042 (Harlan) 2486462 RIBA00000000.1 Bac0019736 Muribaculaceae bacterium Isolate-080 (Janvier) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-080 (Janvier) 2486468 RIBG00000000.1 Bac0019737 Muribaculaceae bacterium Isolate-104 (HZI) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-104 (HZI) 2486471 RIBJ00000000.1 Bac0019738 Muribaculaceae bacterium Isolate-105 (HZI) seq55 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-105 (HZI) 2486472 RIBK00000000.1 Bac0019739 Bacillus thuringiensis strain INTA Mo4-4 "Bacillus thuringiensis strain INTA Mo4-4 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate and is classified as a facultative anaerobe. This strain is typically found in host-associated environments, indicating a potential relationship with specific hosts or ecosystems. The ability to form spores allows B. thuringiensis INTA Mo4-4 to survive in fluctuating environmental conditions, which may be advantageous for colonization and persistence in host-associated habitats.↵↵As a facultative anaerobe, this strain can thrive in both the presence and absence of oxygen, which suggests metabolic versatility that may facilitate its adaptation to diverse ecological niches. The presence of this bacterium in host-associated habitats may imply roles in interactions with host organisms, potentially including beneficial relationships or contributions to the microbial community structure. ↵↵Overall, the unique combination of traits in Bacillus thuringiensis strain INTA Mo4-4 points to its potential significance in microbial dynamics within host-associated environments, where it may influence nutrient cycling or host health through its metabolic activities." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus thuringiensis Positive Rod Yes 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Sporulating Animal; insects 1428 RIBV00000000.1 Bac0019740 Rhizobium anhuiense strain CCBAU 23252 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium anhuiense 1184720 RIBW00000000.1 Bac0019741 Streptomyces botrytidirepellens strain NEAU-LD23 C4827 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces botrytidirepellens 2486417 RIBZ00000000.1 Bac0019742 Acidithiobacillus sulfuriphilus strain CJ-2 Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus sulfuriphilus 1867749 RIZI00000000.1 Bac0019743 Escherichia coli strain L889 "Escherichia coli strain L889 is a Gram-negative, rod-shaped bacterium that typically exhibits cell arrangements in pairs or singles. This strain thrives optimally at 37.0°C, a temperature commonly found within the human body, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain L889 has the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to colonize various niches within its host. ↵↵The properties of this strain enable it to utilize diverse metabolic pathways, facilitating its survival under fluctuating oxygen levels. Given its association with host environments, E. coli strain L889 may play a role in the complex microbial communities found within the gastrointestinal tract, contributing to nutrient absorption and metabolism. Understanding the physiological and ecological traits of this strain can provide insights into its potential interactions within the microbiome, emphasizing the importance of E. coli not only as a model organism in microbiological research but also as a key player in host-microbe dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RIZO00000000.1 Bac0019744 Escherichia coli strain C15-b "Escherichia coli strain C15-b is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement of pairs and singles. This strain thrives optimally at 37.0°C, a temperature consistent with that of its typical host organisms. E. coli strain C15-b is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which enhances its adaptability to various host-associated habitats.↵↵The habitat of E. coli strain C15-b is primarily associated with host organisms, suggesting its potential role in symbiotic relationships or its presence within the gastrointestinal tract of mammals. Its facultative anaerobic nature allows it to efficiently utilize available oxygen while also being capable of fermentative metabolism in anaerobic conditions. This metabolic flexibility may provide E. coli strain C15-b with a competitive advantage in diverse physiological environments encountered within a host.↵↵Overall, the adaptability of E. coli strain C15-b to different oxygen levels and its optimal growth temperature reflects its evolutionary specialization to thrive within host-associated environments, potentially contributing to its ecological success in various biological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RJDM00000000.1 Bac0019745 Helicobacter pylori strain ZH13 40 "Helicobacter pylori strain ZH13 40 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, reflecting its adaptation to the warm environment of its host. H. pylori strain ZH13 40 exhibits a microaerophilic oxygen requirement, indicating that it requires reduced levels of oxygen for growth, a trait that is typical for many members of the Helicobacter genus. ↵↵As a host-associated organism, H. pylori strain ZH13 40 is likely to inhabit the gastric mucosa of the host, where it may play a role in maintaining the microbial balance within the stomach. Understanding the specific environmental conditions and requirements of this strain enhances our knowledge of its ecological niche and potential interactions with other microbial inhabitants of the gastrointestinal tract. This insight underscores the importance of microaerophilic conditions in shaping the microbial community structure within the host’s stomach, potentially influencing both microbial dynamics and host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEM00000000.1 Bac0019746 Helicobacter pylori strain ZH15 72 "Helicobacter pylori strain ZH15 72 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives at an optimal temperature of 37.0°C, which corresponds with the typical human body temperature, indicating its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, strain ZH15 72 is likely to inhabit the gastric mucosa, where it may play a role in complex host-microbe interactions. The microaerophilic nature of this strain suggests that it requires reduced levels of oxygen for optimal growth, a condition commonly found in the stomach's environment. ↵↵Understanding the specific traits of Helicobacter pylori strain ZH15 72 can provide insights into its ecological niche and potential roles in the gastrointestinal microbiome. The ability of this strain to thrive in microaerophilic conditions may also influence the microbial composition in the stomach, thereby affecting host health and disease processes. Further research into this strain could elucidate its specific interactions within the host and its potential contributions to the maintenance of gastric homeostasis." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEO00000000.1 Bac0019747 Helicobacter pylori strain ZH17 53 "Helicobacter pylori strain ZH17 53 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in a microaerophilic environment, indicating its preference for low oxygen levels, which is typical for many members of the Helicobacter genus. The optimal growth temperature for strain ZH17 53 is approximately 37.0 °C, aligning with the physiological temperature of the human host, where it is predominantly found.↵↵As a host-associated organism, H. pylori strain ZH17 53 occupies a niche within the gastric mucosa, where it has adapted to survive in the acidic environment of the stomach. The microaerophilic nature of this strain suggests a finely tuned metabolic pathway that allows it to utilize the limited oxygen availability present in its habitat, which is critical for its survival and proliferation.↵↵Furthermore, the unique morphology of this strain, being a spirilla, may play a role in its motility and ability to navigate through the viscous mucus layer of the gastric lining. This adaptation not only facilitates colonization but may also influence interactions with the host's immune response. Understanding the physiological traits of H. pylori strain ZH17 53 can provide insight into its ecological role within the gastric environment and its relationship with the host, potentially informing future studies on microbial dynamics in gastrointestinal microbiomes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEQ00000000.1 Bac0019748 Helicobacter pylori strain ZH18 33 "Helicobacter pylori strain ZH18 33 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is adapted to a microaerophilic environment, indicating that it thrives in conditions with reduced oxygen levels, which is typical for organisms inhabiting the gastric mucosa of hosts. The optimal growth temperature for H. pylori strain ZH18 33 is approximately 37.0°C, aligning with the physiological temperature of the human body, further supporting its host-associated habitat.↵↵Helicobacter pylori is widely studied for its role in gastric health; however, specific pathogenicity traits of strain ZH18 33 remain to be elucidated. The strain's adaptation to a microaerophilic lifestyle suggests that it may have evolved specialized metabolic pathways that allow it to survive in the acidic environment of the stomach, where oxygen levels are low. Understanding the physiological and ecological adaptations of H. pylori strain ZH18 33 may provide insights into its interactions with the host microbiome and its potential influence on gastric conditions. This highlights the importance of further research into the ecological roles of such host-associated microorganisms in maintaining gastrointestinal homeostasis." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJER00000000.1 Bac0019749 Helicobacter pylori strain ZH20 33 "Helicobacter pylori strain ZH20 33 is a Gram-negative microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives at an optimal temperature of 37.0°C, which aligns with the physiological temperature of the human stomach, its primary habitat. As a host-associated organism, H. pylori strain ZH20 33 resides within the gastric mucosa, where it plays a complex role in the microenvironment.↵↵The microaerophilic nature of H. pylori suggests that it requires specific oxygen levels for optimal growth, which typically range between 5% and 10% oxygen, conditions commonly found in the gastric niche. The spiral morphology of this bacterium is believed to facilitate its motility through the viscous gastric mucus layer, enabling it to colonize and persist in the harsh acidic environment of the stomach.↵↵The unique traits of strain ZH20 33 provide insights into its adaptive mechanisms for survival in host-associated habitats. Its ability to thrive at human physiological temperatures and its specialized oxygen requirements indicate a high degree of evolutionary adaptation to the gastric environment, highlighting the intricate relationships that exist between host organisms and their microbial inhabitants. Understanding the specific traits of H. pylori strain ZH20 33 could inform future research on its ecological role and interactions within the human microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJET00000000.1 Bac0019750 Helicobacter pylori strain ZH24 30 "Helicobacter pylori strain ZH24 30 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and arrangement in single cells. This strain thrives optimally at 37.0°C, indicating its adaptation to the warm environments typically found in mammalian hosts. As a member of the Helicobacter genus, strain ZH24 30 is associated with a host-related habitat, suggesting a specialized ecological niche within the gastric mucosa of its hosts.↵↵The microaerophilic nature of H. pylori strain ZH24 30 indicates that it requires reduced levels of oxygen for growth, which aligns with its presence in the gastric environment where oxygen concentration is low. This adaptation likely provides the strain with a competitive advantage in thriving within the host's stomach, allowing it to establish and maintain its presence in this challenging environment.↵↵Moreover, the single-cell arrangement of H. pylori strain ZH24 30 may facilitate its mobility and colonization capabilities within the viscous gastric mucus, potentially impacting its interactions with host tissues and microbiota. This characteristic could also influence the strain's ability to evade immune responses, highlighting the intricate relationship between H. pylori and its host. Understanding the specific traits of H. pylori strain ZH24 30 contributes to our broader knowledge of microbial adaptation and survival in host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEX00000000.1 Bac0019751 Helicobacter pylori strain ZH26 172 "Helicobacter pylori strain ZH26 172 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is notably adapted to a microaerophilic environment, thriving optimally at 37.0°C, which aligns with the typical human body temperature. As a host-associated organism, H. pylori strain ZH26 172 is likely to inhabit the gastric mucosa of its hosts, where it can engage in complex interactions with the host's immune system and gastric environment.↵↵The microaerophilic nature of this strain suggests a specialized adaptation to low oxygen conditions, which may influence its metabolic pathways and survival strategies within the gastric niche. The single-cell arrangement indicates a potential for individual cell behavior, contrasting with other bacteria that may form biofilms or colonies, thereby providing insights into its ecological role in the gastric ecosystem. ↵↵Given its optimal growth conditions and habitat association, H. pylori strain ZH26 172 may play a significant role in the gastric microbiome, potentially influencing local pH and nutrient availability. The strain's characteristics underscore its evolutionary adaptations to a specific niche, reflecting the intricate balance of microbial life within the human host. Further studies could elucidate the interactions between this strain and other microbial inhabitants of the stomach, contributing to a more comprehensive understanding of gastric microbiota dynamics." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJEZ00000000.1 Bac0019752 Helicobacter pylori strain ZH27 57 "Helicobacter pylori strain ZH27 57 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at 37.0°C, reflecting a preference for the warm conditions typically found in the gastrointestinal tract of its host. As a microaerophilic organism, H. pylori strain ZH27 57 requires reduced levels of oxygen for growth, which is consistent with its adaptation to the oxygen-limited environments of the stomach.↵↵The habitat of H. pylori strain ZH27 57 is notably host-associated, indicating that it is primarily found within the gastrointestinal systems of various hosts, where it may play a role in the complex microbial community. The specific adaptations of this strain to its host-associated environment suggest a potential for specialized interactions with host physiology, which may influence nutrient availability and microbial competition within the gastric niche.↵↵Understanding the traits of H. pylori strain ZH27 57 not only provides insights into its physiological needs but also highlights the intricate balance of microbial life in host environments. This balance is significant for understanding how variations in microbial traits can affect host health and disease dynamics, particularly in regard to the role of microaerophilic bacteria in maintaining gastrointestinal homeostasis." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFA00000000.1 Bac0019753 Helicobacter pylori strain ZH28 42 "Helicobacter pylori strain ZH28 42 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host environment, typically the human gastric mucosa. ↵↵As a member of the Helicobacter genus, strain ZH28 42 is notably adapted to its host-associated habitat, where it may play a role in the intricate balance of gastric microbiota. The microaerophilic nature of this strain suggests a specialized adaptation to the low-oxygen conditions of the stomach, where it may engage in metabolic processes that differentiate it from aerobic and anaerobic organisms. ↵↵The morphological characteristics of H. pylori, including its distinct spirilla shape, contribute to its motility, allowing it to navigate the viscous gastric environment effectively. Understanding the adaptive traits of Helicobacter pylori strain ZH28 42 can provide insights into its ecological niche within the gastric microbiome and its potential interactions with host immune responses. This adaptability emphasizes the importance of studying such strains to elucidate their roles in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFB00000000.1 Bac0019754 Helicobacter pylori strain ZH29 61 "Helicobacter pylori strain ZH29 61 is a Gram-negative bacterium characterized by its spirilla shape and presence as single cells. This microbe exhibits optimal growth at a temperature of 37.0°C, aligning with its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori strain ZH29 61 requires reduced oxygen levels for its metabolic processes, which is typical for many members of the Helicobacter genus that colonize the gastric mucosa of their hosts.↵↵The unique morphology of H. pylori strain ZH29 61, with its spiral form, is believed to facilitate motility within the viscous environment of the gastric lining, potentially aiding in its persistence and colonization. The association of this strain with a host environment suggests a specialized niche that may influence its survival and behavior compared to environmental bacteria. Understanding these traits contributes to the broader knowledge of H. pylori and its adaptations to the gastric environment, highlighting its role in the complex interactions within the host's microbiome. Further examination of strain ZH29 61 may provide insights into the mechanisms of its microaerophilic lifestyle and its interactions with host physiological processes." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFC00000000.1 Bac0019755 Helicobacter pylori strain ZH35 52 "Helicobacter pylori strain ZH35 52 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of its host, indicating its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori strain ZH35 52 requires a low concentration of oxygen for growth, which is typically found in the gastric environment of the stomach.↵↵The unique morphology of this strain, along with its specific growth conditions, underscores its specialized ecological niche within the host. H. pylori is known to colonize the gastric mucosa, where it can influence local microbiota and host health. The microaerophilic nature of H. pylori suggests that it may play a role in the microbial dynamics of the gastric ecosystem, potentially impacting the host's immune response and the overall microbial community structure. Understanding the traits of strain ZH35 52 may provide insights into its functional role in the microbiome and its interactions with host physiology, which could be significant in both health and disease contexts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFI00000000.1 Bac0019756 Helicobacter pylori strain ZH36 35 "Helicobacter pylori strain ZH36 35 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and solitary cell arrangement. This strain exhibits optimal growth at 37.0°C, which aligns with the physiological temperature of the human gastric environment, indicating its adaptation to host-associated habitats. H. pylori is predominantly found in the stomach lining, where it can persist in the presence of gastric acidity, a trait that underscores its specialized niche within the host.↵↵As a microaerophilic organism, H. pylori requires reduced levels of oxygen for growth, which is pertinent to its survival in the gastric mucosa, where oxygen concentration is lower than in the surrounding atmosphere. The ability to thrive in such a specific environment may reflect evolutionary adaptations that allow for successful colonization and persistence within host tissues. ↵↵Given its unique traits, H. pylori strain ZH36 35 may serve as an important model for studying host-microbe interactions in the gastrointestinal tract, particularly in understanding the mechanisms of survival in hostile environments and the complex dynamics of microbial communities associated with human health. This strain's specialized adaptations could provide insights into the microbial ecology of the stomach and the potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFJ00000000.1 Bac0019757 Helicobacter pylori strain ZH40 32 "Helicobacter pylori strain ZH40 32 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe demonstrates optimal growth at a temperature of 37.0°C, which is consistent with its adaptation to host-associated environments, typically found in the gastrointestinal tract of mammals. As a microaerophilic organism, H. pylori strain ZH40 32 requires reduced oxygen levels for optimal metabolic activity, reflecting its specialized niche and potential adaptations to the host's internal environment.↵↵The unique morphological features of H. pylori, combined with its specific oxygen requirements, suggest that this strain may exhibit distinct physiological characteristics that allow it to thrive in the complex microbial communities of the stomach. The ability to survive and grow in a microaerophilic setting is particularly pertinent, as it may influence the strain's interactions with other microbial species and its overall role in the host's microbiome. Understanding these traits can provide insights into the ecological dynamics of H. pylori in relation to its host, potentially shedding light on its behavior in health and disease contexts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFN00000000.1 Bac0019758 Helicobacter pylori strain Zh50 35 "Helicobacter pylori strain Zh50 35 is a Gram-negative bacterium characterized by its spirilla morphology and single-cell arrangement. It thrives optimally at a temperature of 37.0°C, suggesting a preference for the conditions found within the human gastric environment. As a microaerophilic organism, H. pylori strain Zh50 35 requires reduced oxygen levels for growth, which aligns with its adaptation to the hostile conditions of the stomach where oxygen concentration is significantly lower than in atmospheric conditions.↵↵This strain is host-associated, indicating that it predominantly resides in or on a host organism, likely contributing to its ecological niche within the gastric mucosa. The presence of H. pylori in the stomach is of particular interest in microbiological research due to its unique metabolic adaptations and interactions with the host environment. Understanding the specific ecological roles of strains like Zh50 35 can provide insights into their survival strategies and potential implications for host health. The ability of this strain to maintain its viability in the microaerophilic conditions of the gastric niche exemplifies the specialized adaptations of H. pylori to its habitat, potentially influencing the dynamics of the gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFW00000000.1 Bac0019759 Helicobacter pylori strain ZH51 34 "Helicobacter pylori strain ZH51 34 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its primary habitat, the human gastric environment. ↵↵As a host-associated microbe, H. pylori is known to colonize the gastric epithelium, where it may play a complex role in the gastric microbiome. Its microaerophilic nature suggests a preference for environments with lower oxygen levels than those typically found in the atmosphere, which is consistent with its adaptation to the human stomach, where oxygen concentration is reduced. The ability to survive in such conditions is crucial for its persistence and interaction with the host.↵↵The unique morphology of H. pylori, combined with its specific environmental requirements, underscores its adaptation to the gastric niche. Understanding the traits of strain ZH51 34 can provide insights into the ecological dynamics of H. pylori within the human microbiome, particularly regarding its interactions with both host cells and other microbial communities in the stomach. This highlights the potential for strain-specific behaviors and responses to varying microenvironments within the host." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJFX00000000.1 Bac0019760 Helicobacter pylori strain ZH55 55 "Helicobacter pylori strain ZH55 is a Gram-negative, microaerophilic bacterium characterized by its spiral-shaped morphology and a tendency to exist as single cells. Optimal growth conditions for this strain are found at a temperature of 37.0°C, which aligns with its adaptation to a host-associated habitat, likely within the gastric environment of mammals. ↵↵As a member of the Helicobacter genus, strain ZH55 shares traits typical of this group, including its helical structure which may facilitate motility through viscous environments such as mucus. The microaerophilic nature of H. pylori indicates its requirement for reduced oxygen levels, which are typically found in the gastric niche, further supporting its association with host organisms.↵↵Given its specific habitat and growth requirements, H. pylori strain ZH55 may play a role in the complex interactions within the host microbiome, potentially influencing gastric physiology and health. The adaptation to a microaerophilic environment suggests that this strain could be involved in specific metabolic processes that take advantage of the unique conditions present in the stomach, contributing to our understanding of microbial ecology in host-associated systems." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGB00000000.1 Bac0019761 Helicobacter pylori strain ZH59 35 "Helicobacter pylori strain ZH59 35 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe thrives at an optimal temperature of 37.0°C, aligning with its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori strain ZH59 35 requires reduced oxygen levels for optimal growth, which is reflective of its natural environment within the gastric mucosa of hosts. ↵↵The unique morphological characteristics of spirilla may contribute to its motility and ability to navigate the viscous environment of the stomach, potentially influencing its colonization success. Furthermore, the microaerophilic requirement suggests that H. pylori strain ZH59 35 has evolved mechanisms to survive in the oxygen-limited conditions typically found in the gastric niche, which may also play a role in its interactions with the host's immune system. ↵↵Overall, the distinct traits of H. pylori strain ZH59 35 highlight its specialization for life in the gastrointestinal tract, where it may impact host physiology and the microbial community dynamics within the stomach. Understanding its specific adaptations can provide insights into its ecological role and potential interactions with other microbial residents in host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGF00000000.1 Bac0019762 Helicobacter pylori strain ZH63 45 "Helicobacter pylori strain ZH63 45 is a microaerophilic, Gram-negative bacterium characterized by its distinctive spirilla shape and solitary cell arrangement. This strain thrives optimally at 37.0 °C, which aligns with the typical physiological temperature of its host organisms, suggesting a close association with mammalian hosts. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, distinguishing it from strictly aerobic or anaerobic microbes.↵↵As a host-associated organism, H. pylori strain ZH63 45 predominantly inhabits the gastric mucosa of its host, where its unique morphology and metabolic requirements facilitate its survival in the acidic environment of the stomach. This adaptation to a specialized habitat underscores the evolutionary relationship between H. pylori and its mammalian hosts, as it has developed mechanisms to navigate the challenges posed by gastric acidity and fluctuating oxygen levels.↵↵Further exploration of H. pylori strain ZH63 45 may provide insights into its ecological role within the gastric microbiome and its potential interactions with other microbial inhabitants. Understanding these dynamics could shed light on the broader implications of host-associated microbiota in health and disease, particularly in relation to gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGJ00000000.1 Bac0019763 Helicobacter pylori strain ZH68 56 "Helicobacter pylori strain ZH68 56 is a Gram-negative bacterium characterized by its spiral shape and solitary cell arrangement. This microbe thrives optimally at 37.0 °C, which corresponds to the average human body temperature, indicating its adaptation to a host-associated habitat. H. pylori strain ZH68 56 is microaerophilic, requiring reduced oxygen levels for optimal growth, a trait that aligns with its natural niche in the gastric environment of mammals.↵↵The microaerophilic nature of H. pylori suggests that it occupies a unique ecological niche within the stomach, where it can exploit the specific conditions created by the gastric mucosa. This adaptation not only enables the bacterium to survive in the acidic environment of the stomach but also highlights its potential role in the complex interactions between the host and its microbiome. The solitary arrangement of cells may also influence its interactions with host tissues and other microbial inhabitants, potentially affecting its ecological dynamics within the gastric ecosystem.↵↵Overall, the traits of Helicobacter pylori strain ZH68 56 underscore its specialization for survival and growth in the distinct microenvironment of the host's stomach, contributing to our understanding of its biology and ecological relationships." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGN00000000.1 Bac0019764 Helicobacter pylori strain ZH69 33 "Helicobacter pylori strain ZH69 33 is a Gram-negative microbe characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at 37.0°C, indicating its adaptation to body temperature, which is typical for organisms associated with the human host. As a microaerophilic organism, H. pylori strain ZH69 33 requires reduced oxygen levels for its metabolic processes, which aligns with its habitat being host-associated, specifically within the gastric environment.↵↵The unique morphological and physiological traits of H. pylori strain ZH69 33 suggest its specialization in colonizing the acidic conditions of the stomach, where it can persist and potentially influence the host's gastric health. The microaerophilic requirement may also indicate a finely tuned metabolic strategy that allows it to exploit the niche of the human gastrointestinal tract, where oxygen levels are lower compared to the external environment. This strain represents a notable example of microbial adaptation to specific ecological niches within the host, highlighting the intricate relationships between pathogenic bacteria and their human hosts." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGO00000000.1 Bac0019765 Helicobacter pylori strain ZH76 50 "Helicobacter pylori strain ZH76 50 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the human body temperature, indicating its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, this strain is known to inhabit the gastric mucosa of mammals, where it may play a complex role in the gastrointestinal microbiome. The microaerophilic nature of H. pylori strain ZH76 50 suggests that it requires reduced oxygen levels for optimal growth, which is consistent with the conditions found in the stomach. This adaptation not only allows for survival in a niche that is hostile to many other bacteria but also highlights the bacterium's potential interactions within the host's environment.↵↵Overall, the specific traits of Helicobacter pylori strain ZH76 50 underscore its ecological specialization and suggest a finely tuned relationship with its host, where it may contribute to the maintenance of gastric microflora under specific environmental conditions. Further exploration of its interactions within the host ecosystem could reveal insights into its functional roles and the dynamics of microbial communities in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGS00000000.1 Bac0019766 Helicobacter pylori strain ZH79 60 "Helicobacter pylori strain ZH79 60 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain optimally thrives at a temperature of 37.0 °C, which aligns with the typical physiological conditions found within the gastrointestinal tract of its hosts. As a host-associated microbe, H. pylori strain ZH79 60 occupies a niche that is primarily linked to the stomach, where it may play a role in complex microbial interactions.↵↵The microaerophilic nature of this strain indicates its requirement for reduced oxygen levels, which suggests an adaptation to the low-oxygen environment of the gastric mucosa. This adaptation may facilitate its survival and persistence in a habitat that poses significant challenges, such as fluctuations in pH and the presence of gastric acid. The unique characteristics of H. pylori strain ZH79 60 underscore its specialized role within host-associated ecosystems, potentially influencing gastric microbiota composition and function.↵↵Understanding the specific traits of H. pylori strain ZH79 60 may provide insights into the broader ecological dynamics of the gastric environment, including the interactions between host and microbial communities, as well as the potential implications for gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGV00000000.1 Bac0019767 Helicobacter pylori strain ZH84 44 "Helicobacter pylori strain ZH84 44 is a Gram-negative bacterium characterized by its spirilla morphology and single-cell arrangement. This microbe thrives in a microaerophilic environment, necessitating reduced oxygen levels for optimal growth. The strain's optimal temperature for growth is approximately 37.0°C, aligning with the physiological temperature of its host organisms. ↵↵H. pylori is known to inhabit the gastric mucosa of humans and other mammals, indicating its adaptation to a host-associated habitat. This association suggests a specialized ecological role within the gastrointestinal tract, where it may influence local microbial communities and host health. The microaerophilic requirement of H. pylori indicates its adaptation to the low-oxygen conditions typically found in the gastric environment, where it can survive and potentially thrive amidst the harsh conditions presented by gastric acid.↵↵Understanding the traits of H. pylori strain ZH84 44 could provide insights into its metabolic capabilities and ecological interactions within the host. The specific adaptation to microaerophilic conditions may allow it to exploit niches within the gastric environment that are less accessible to aerobic competitors, highlighting its potential role in maintaining the microbial diversity of the gastrointestinal microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJGZ00000000.1 Bac0019768 Helicobacter pylori strain ZH94 47 "Helicobacter pylori strain ZH94 47 is a Gram-negative bacterium characterized by its spiral shape (spirilla) and single-cell arrangement. This strain thrives optimally at 37.0°C, indicating its adaptation to the human body, where it is primarily found in a host-associated habitat. As a microaerophilic organism, H. pylori strain ZH94 47 requires reduced oxygen levels for growth, which is consistent with its ecological niche in the gastric environment.↵↵The microaerophilic nature of H. pylori suggests that it occupies specific microenvironments within the stomach, where oxygen concentration is lower than that of the atmosphere. This adaptation may facilitate its survival and metabolic processes in the highly acidic gastric milieu. Understanding the traits of H. pylori strain ZH94 47 provides insights into the environmental conditions under which this bacterium thrives, as well as its potential interactions within the host. The unique combination of its morphology, oxygen requirements, and habitat underscores the complex relationship this strain maintains with its human host, potentially influencing both its survival strategies and the dynamics of the gastric microbiome." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHH00000000.1 Bac0019769 Helicobacter pylori strain ZH99 43 "Helicobacter pylori strain ZH99 43 is a Gram-negative bacterium characterized by its unique spirilla shape and the presence of single-cell arrangements. This microbe thrives optimally at a temperature of 37.0°C, which corresponds with the average human body temperature, indicating its adaptation to a host-associated habitat. As a microaerophilic organism, H. pylori strain ZH99 43 requires a reduced oxygen environment for survival, which is typically found in the gastric mucosa of its host. ↵↵The microbe's morphological and physiological traits suggest a specialized adaptation to the gastric niche, where it may play a role in the complex interactions within the gastrointestinal microbiome. Its spiral morphology may facilitate motility through the viscous gastric mucus, potentially influencing its colonization efficiency and persistence in the gastric environment. Understanding the specific growth conditions and environmental requirements of H. pylori strain ZH99 43 enhances our comprehension of its ecological role in the human stomach and the potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHM00000000.1 Bac0019770 Helicobacter pylori strain ZH100 80 "Helicobacter pylori strain ZH100 80 is a Gram-negative bacterium characterized by its spiral shape and single-cell arrangement. This microbe is optimally active at a temperature of 37°C, which aligns with its adaptation to a host-associated habitat. H. pylori strain ZH100 80 exhibits a microaerophilic oxygen requirement, indicating that it thrives in environments with reduced oxygen levels, typical of the gastric mucosa where it is commonly found.↵↵The spiral morphology of H. pylori is thought to play a crucial role in its ability to colonize the stomach lining, as it may enhance the bacterium's motility through the viscous environment of gastric mucus. This unique adaptation enables the strain to navigate the acidic conditions of the stomach, contributing to its survival and persistence within the host. Understanding the specific traits of H. pylori strain ZH100 80 may provide insights into its ecological niche and its interactions with the host’s immune system, which is essential for comprehending the broader implications of its presence in the gastric environment. Such knowledge could inform future research on the roles of H. pylori in gastrointestinal health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHN00000000.1 Bac0019771 Helicobacter pylori strain ZH102 33 "Helicobacter pylori strain ZH102 33 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at 37.0°C, which aligns with the typical temperature of the human body, suggesting its adaptation to a host-associated habitat. H. pylori strain ZH102 33 is microaerophilic, indicating that it requires a reduced oxygen concentration for growth, a trait that may facilitate its survival in the gastric environment where oxygen levels are limited.↵↵The microaerophilic nature of H. pylori strain ZH102 33 allows it to inhabit the gastric mucosa, where it may contribute to complex interactions with the host's immune system and gastric microbiota. Its adaptation to the host-associated niche not only underscores its potential role in the human gastric ecosystem but also highlights the necessity for specific growth conditions to maintain its viability. Understanding these traits is crucial for further studies on the microbial communities in the human stomach and the implications for gastric health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHP00000000.1 Bac0019772 Helicobacter pylori strain ZH104 46 "Helicobacter pylori strain ZH104 46 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and tendency to exist as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with its association with host environments, particularly the human gastric mucosa. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, a condition typically found in the gastric niche where oxygen concentration is lower than atmospheric levels.↵↵As a member of the genus Helicobacter, strain ZH104 46 exhibits the typical traits of spirilla, which may facilitate motility within the viscous environment of the stomach. Its adaptation to a host-associated habitat suggests a specialized role in a particular ecological niche, potentially influencing host interactions. ↵↵Given its microaerophilic requirement and spirilla morphology, H. pylori strain ZH104 46 may play a significant role in the dynamics of gut microbiota, affecting not only its immediate environment but also potentially influencing broader gastrointestinal health. Understanding the specific traits of this strain can contribute to a greater comprehension of its ecological role and the implications it may have within the host's gastric environment." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHR00000000.1 Bac0019773 Helicobacter pylori strain ZH108 42 "Helicobacter pylori strain ZH108 42 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and solitary cell arrangement. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host environment. H. pylori is notably associated with the gastric epithelium, indicating its adaptation to a host-associated habitat, which may contribute to its survival and metabolic activities within the gastric niche.↵↵Given its microaerophilic nature, H. pylori strain ZH108 42 requires reduced levels of oxygen for growth, reflecting its adaptation to the low-oxygen conditions found within the stomach. The spiral morphology of this bacterium may facilitate its motility through the viscous gastric mucus, potentially enhancing its ability to colonize and persist in the harsh acidic environment of the stomach.↵↵The unique combination of traits exhibited by H. pylori strain ZH108 42 suggests a specialized ecological role, wherein it may contribute to the microbiome of the gastric environment, influencing not only its own survival but also the overall dynamics of microbial communities within the host. This insight underscores the potential importance of H. pylori in the complex interplay between host physiology and microbial ecology." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHU00000000.1 Bac0019774 Helicobacter pylori strain ZH1110 88 "Helicobacter pylori strain ZH1110 88 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe exhibits an optimal growth temperature of 37.0 °C, aligning with the typical physiological conditions found within the gastric environment of its host. H. pylori strain ZH1110 88 is classified as microaerophilic, indicating that it requires reduced levels of oxygen for growth, which is consistent with its colonization in the stomach where oxygen levels are typically lower than atmospheric conditions.↵↵As a host-associated organism, H. pylori strain ZH1110 88 is adapted to thrive in the gastrointestinal tract of its host, utilizing the unique niche provided by the gastric mucosa. The bacterium's microaerophilic nature suggests a specialized metabolism that allows it to survive in the acidic gastric environment while utilizing the limited oxygen availability. Understanding the traits of H. pylori strain ZH1110 88 is essential for studying its role in host interactions and the potential implications for gastrointestinal health. ↵↵Notably, the presence of this strain in host-associated habitats highlights the complex adaptations of H. pylori, emphasizing its potential role in influencing host gastric physiology and microbial community dynamics within the stomach." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHW00000000.1 Bac0019775 Helicobacter pylori strain ZH1111 63 "Helicobacter pylori strain ZH1111 63 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This strain thrives optimally at 37.0°C, which corresponds to the average human body temperature, highlighting its adaptation to a host-associated habitat. H. pylori is known to be microaerophilic, requiring a low-oxygen environment for growth, which is typically found in the gastric mucosa of its host.↵↵The microaerophilic nature of strain ZH1111 63 suggests a specialized ecological niche within the stomach, where it can evade the harsher aerobic conditions of the external environment. This adaptation is critical for survival in the gastric acid environment, allowing the bacterium to establish itself in the gastric epithelium. The strain's ability to maintain a single-cell arrangement may also confer advantages in colonization and nutrient acquisition in the host's gastric milieu.↵↵Overall, the ecological insights gleaned from the traits of H. pylori strain ZH1111 63 underline its specialization for life in a microaerophilic, host-associated environment, emphasizing the intricate relationship between the microbe and its host. This relationship may play a significant role in the bacterium's survival and potential impact on host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJHX00000000.1 Bac0019776 Helicobacter pylori strain ZH115 55 "Helicobacter pylori strain ZH115 55 is a Gram-negative bacterium characterized by its spirilla shape and solitary cell arrangement. This microbe thrives optimally at a temperature of 37.0°C and exhibits microaerophilic growth, indicating its requirement for reduced oxygen levels for optimal metabolic activity. H. pylori strain ZH115 55 is host-associated, suggesting a symbiotic or pathogenic relationship with its host organism, commonly associated with the gastric environment.↵↵The microaerophilic nature of H. pylori strain ZH115 55 implies that it occupies niches within the host where oxygen concentrations are lower than atmospheric levels, which is typical for the gastric mucosa. This adaptation not only supports its survival but may also play a role in its interactions with the host's immune system. The organism's ability to endure the harsh acidic conditions of the stomach while relying on specific environmental conditions for growth highlights its specialized ecological niche.↵↵Understanding the traits of H. pylori strain ZH115 55 can provide insights into its potential roles in gastrointestinal health and disease, as well as its adaptations to the microenvironments within the host. Further studies on this strain may elucidate the mechanisms by which it navigates its microaerophilic habitat and interacts with host tissues, contributing to our knowledge of host-microbe interactions in the gastrointestinal tract." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIA00000000.1 Bac0019777 Helicobacter pylori strain ZH119 36 "Helicobacter pylori strain ZH119 36 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of its host. H. pylori is well-known for its association with the gastric epithelium, and strain ZH119 36 is no exception, inhabiting the stomach of its host organisms.↵↵Given its microaerophilic nature, H. pylori strain ZH119 36 requires low levels of oxygen for growth, reflecting its adaptation to the oxygen-limited environment of the gastric mucosa. The organism's spiral shape may contribute to its motility in the viscous gastric environment, facilitating its colonization and persistence within the harsh acidic conditions of the stomach.↵↵The host-associated habitat of strain ZH119 36 highlights the specific ecological niche it occupies, suggesting a potential role in the complex interactions between the host's gastric microbiota and their immune responses. Understanding the characteristics of this strain not only provides insights into its biological adaptations but also emphasizes the importance of such microbes in influencing host health and disease dynamics within the gastric ecosystem." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIE00000000.1 Bac0019778 Helicobacter pylori strain ZH123 42 "Helicobacter pylori strain ZH123 42 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and a tendency to exist as single cells. This strain demonstrates optimal growth at 37.0°C, which aligns closely with the human body temperature, suggesting its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, strain ZH123 42 is likely associated with the gastric environment, where it may play a role in the complex microbial community of the stomach. Being microaerophilic, this strain requires reduced levels of oxygen for growth, which is consistent with the low-oxygen conditions found in the gastric niche. The unique morphology of spirilla can facilitate motility through the viscous mucus layer of the gastric epithelium, potentially influencing its interactions within the host.↵↵Given its specific habitat and physiological traits, Helicobacter pylori strain ZH123 42 may contribute to the dynamics of microbiota within the gastric milieu, potentially impacting local pH and nutrient availability. Further exploration of its ecological role could provide insights into the interactions between this strain and the host’s immune response, as well as its influence on gastric health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJII00000000.1 Bac0019779 Helicobacter pylori strain ZH124 79 "Helicobacter pylori strain ZH124 79 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives in microaerophilic environments, indicating that it requires reduced levels of oxygen for optimal growth. Helicobacter pylori strain ZH124 79 has an optimal growth temperature of 37.0°C, which aligns with the typical body temperature of its human hosts, suggesting its adaptation to a host-associated habitat. ↵↵As a member of the Helicobacter genus, this strain is likely to inhabit the gastric mucosa, where it can interact with the host's immune system. The microaerophilic nature of strain ZH124 79 may influence its metabolic processes and ecological interactions within the stomach, potentially affecting local pH levels and nutrient availability. Understanding the specific adaptations of this strain within the gastric environment can provide insights into its role in host-microbe interactions, particularly in relation to the regulation of gastric physiology and potential implications for gastrointestinal health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIJ00000000.1 Bac0019780 Helicobacter pylori strain ZH127 42 "Helicobacter pylori strain ZH127 42 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single cell arrangement. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical conditions found within the gastric environment of its mammalian hosts. As a host-associated microbe, H. pylori strain ZH127 42 occupies a niche that is closely linked to the gastrointestinal tract, where it interacts with the host's microbiome and immune system.↵↵The microaerophilic nature of H. pylori indicates that it requires a reduced oxygen concentration for growth, a condition that is often present in the gastric mucosa, allowing it to effectively colonize this environment. This adaptation not only facilitates its survival but may also influence local microbial dynamics and host responses. The unique spiral morphology of H. pylori is thought to aid in its motility through the viscous gastric mucus layer, enhancing its ability to establish and maintain colonization within the host.↵↵The ecological insight of H. pylori strain ZH127 42 lies in its potential role in shaping the gastric microbiome. By adhering to the gastric epithelium and influencing local pH levels, H. pylori may alter the composition and function of other microbial inhabitants, highlighting its significance in gastrointestinal ecology and potential implications for host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIM00000000.1 Bac0019781 Helicobacter pylori strain ZH131 199 "Helicobacter pylori strain ZH131 199 is a Gram-negative microbe characterized by its spirilla shape and the tendency to exist as single cells rather than in clusters. This strain thrives in a microaerophilic environment, indicating its need for reduced oxygen levels, which is consistent with the conditions found within the gastric mucosa of its host. The optimal growth temperature for H. pylori ZH131 199 is approximately 37.0°C, aligning with the typical body temperature of mammals, further emphasizing its adaptation to a host-associated habitat.↵↵As a member of the Helicobacter genus, this strain plays a significant role in the complex interactions within the gastrointestinal tract, where it is commonly found. The ability of H. pylori to survive and proliferate in the acidic environment of the stomach showcases its unique adaptations, including the production of urease to neutralize gastric acid. Given its microaerophilic nature and host association, H. pylori strain ZH131 199 may provide insights into microbial survival strategies in hostile environments, potentially influencing our understanding of microbial ecology in the human gut. Such adaptations highlight the intricate relationships between microbial inhabitants and their hosts, contributing to the broader discourse on gut microbiota and health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIQ00000000.1 Bac0019782 Helicobacter pylori strain ZH132 84 "Helicobacter pylori strain ZH132 84 is a Gram-negative bacterium characterized by its spirilla shape and singular cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, indicating a potential adaptation to the human body, where it is typically found in a host-associated habitat. H. pylori strain ZH132 84 exhibits microaerophilic oxygen requirements, suggesting that it prefers environments with reduced oxygen levels, which are often found in the gastric mucosa of infected hosts.↵↵The microaerophilic nature of H. pylori allows it to survive in the acidic environment of the stomach, where it can colonize the gastric epithelium. Its spiral shape may facilitate motility through the viscous gastric mucus, enabling effective colonization and persistence within the gastric niche. Understanding the specific growth conditions and habitat preferences of H. pylori strain ZH132 84 contributes to our broader comprehension of its biology and ecological interactions in host organisms.↵↵The unique combination of traits observed in H. pylori strain ZH132 84 underscores its specialized adaptations for survival in a highly specific niche, providing insights into the evolutionary pressures that shape microbial life in complex host-associated environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIR00000000.1 Bac0019783 Helicobacter pylori strain ZH133 37 "Helicobacter pylori strain ZH133 37 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with its adaptation to host-associated environments, as it is commonly found in the gastric mucosa of various hosts. ↵↵The microaerophilic nature of H. pylori indicates its requirement for reduced oxygen levels, which is consistent with its habitat in the stomach, where oxygen concentration is relatively low compared to the atmosphere. The spiral morphology of this bacterium is thought to aid in its motility and colonization within the viscous gastric environment, allowing it to navigate through mucus layers and adhere to the epithelial lining.↵↵As a member of the Helicobacter genus, strain ZH133 37's unique traits may contribute to its ecological niche within the host's gastrointestinal tract, potentially influencing local microbial communities and interactions. Further research on this strain could provide insights into its role in the gastric ecosystem and its relationship with host health. The specific adaptations of H. pylori strain ZH133 37 to its microaerophilic and temperature-specific habitat may also inform studies on the evolutionary pressures faced by similar microbes in varied environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIS00000000.1 Bac0019784 Helicobacter pylori strain ZH137 44 "Helicobacter pylori strain ZH137 44 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and single-cell arrangement. This strain demonstrates optimal growth at 37.0 °C, which aligns with its adaptation to host-associated environments, likely reflecting its association with the gastric mucosa of mammals.↵↵As a member of the Helicobacter genus, strain ZH137 44 thrives in low-oxygen conditions, which corresponds with its microaerophilic requirement. The ability to maintain viability and metabolic function in such environments suggests a specialized adaptation to the microenvironment of the stomach, where oxygen levels are significantly lower than atmospheric concentrations.↵↵The ecological role of Helicobacter pylori, including strain ZH137 44, is often linked to its interactions within the host environment, where it may contribute to complex microbial communities. Its unique traits, particularly its optimal growth temperature and microaerophilic nature, highlight the organism's potential for niche specialization within the gastrointestinal tract. Understanding these traits is essential for elucidating the ecological dynamics of Helicobacter species and their relationships with host health and disease." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RJIW00000000.1 Bac0019785 Rufibacter latericius strain R-22-1 c-1 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Rufibacter Rufibacter latericius 2487040 RJJD00000000.1 Bac0019786 Rufibacter immobilis strain MCC P1 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Rufibacter Rufibacter immobilis 1348778 RJJE00000000.1 Bac0019787 Methanohalophilus euhalobius strain DSM 10369 Me10369_scfld_9 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus euhalobius 51203 RJJF00000000.1 Bac0019788 Flexivirga caeni strain BO-16 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Flexivirga Flexivirga caeni 2294115 RJJQ00000000.1 Bac0019789 Rhizobium pisi strain DSM 30132 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium pisi 574561 RJJT00000000.1 Bac0019790 Ancylomarina longa strain T3-2 S1-C Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Ancylomarina Ancylomarina longa 2487017 RJJX00000000.1 Bac0019791 Micromonospora sp. Llam0 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. Llam0 2485143 RJJY00000000.1 Bac0019792 Streptomyces sp. PanSC9 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. PanSC9 1520461 RJKP00000000.1 Bac0019793 Curtobacterium sp. PhB115 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB115 2485173 RJKR00000000.1 Bac0019794 Rathayibacter sp. PhB93 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. PhB93 2485103 RJLA00000000.1 Bac0019795 Photobacterium chitinilyticum strain BEI247 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium chitinilyticum 2485123 RJLM00000000.1 Bac0019796 Micromonospora solifontis strain PPF5-17 227 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora solifontis 2487138 RJLN00000000.1 Bac0019797 Staphylococcus pasteuri strain RIT605 28 "Staphylococcus pasteuri strain RIT605 28 is characterized as a cocci-shaped bacterium, belonging to the Staphylococcus genus. This strain exemplifies the typical morphological features associated with staphylococci, displaying a spherical shape that can occur singly, in pairs, or in clusters. This arrangement is particularly notable because it reflects the bacterium's division pattern, which occurs in multiple planes.↵↵As part of the Staphylococcus genus, S. pasteuri is known for its resilience and adaptability to various environments, often found in association with human and animal hosts, as well as in diverse ecological niches. While specific traits regarding its metabolic capabilities, growth conditions, or pathogenic potential are not provided, the general characteristics of the Staphylococcus genus suggest that S. pasteuri may thrive in environments with varying levels of oxygen and nutrient availability.↵↵The ecological role of S. pasteuri strain RIT605 28 could be significant in biogeochemical cycles or in the microbiomes of hosts where it resides. Further research into its interactions within these ecosystems could provide valuable insights into its potential contributions to microbial community dynamics and the maintenance of microbial diversity. Understanding these interactions may reveal the strain's functional roles, particularly in environments where staphylococci are prevalent." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus pasteuri Cocci 45972 RJLY00000000.1 Bac0019798 Staphylococcus cohnii strain RIT614 44 "Staphylococcus cohnii strain RIT614 44 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. As a chemoheterotroph, this strain utilizes organic compounds as its energy and carbon source, which aligns with its adaptability to various habitats. ↵↵The cocci shape of S. cohnii strain RIT614 44 contributes to its characteristic clustering, often observed in staphylococci, which may influence its ecological interactions and potential roles in microbial communities. The versatility in oxygen utilization suggests that this strain can occupy diverse ecological niches, potentially including skin and mucosal surfaces, where it may play a role in maintaining the microbial balance.↵↵Understanding the metabolic capabilities and ecological adaptability of Staphylococcus cohnii strain RIT614 44 can provide insights into its interactions within microbial consortia, particularly in environments where nutrient competition and metabolic cooperation are crucial for survival. These traits may also inform research into its potential applications in biotechnology or its role in human-associated microbiomes." Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus cohnii Positive Cocci No 1 Facultative anaerobe Chemoheterotroph Multiple Nonsporulating 29382 RJLZ00000000.1 Bac0019799 Halostreptopolyspora alba strain YIM 96095 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Halostreptopolyspora Halostreptopolyspora alba 2487137 RJMB00000000.1 Bac0019800 Streptococcus oralis strain BCA18 "Streptococcus oralis strain BCA18 is a Gram-positive coccus that typically exhibits a characteristic arrangement in pairs or chains. This strain is classified as a facultative anaerobe, indicating its capability to thrive in both aerobic and anaerobic environments, which may enhance its survival in diverse host-associated habitats. ↵↵As a member of the Streptococcus genus, S. oralis strain BCA18 is likely to inhabit mucosal surfaces within the host, potentially contributing to the complex microbiota found in the oral cavity. The presence of this strain in host-associated environments suggests its potential role in maintaining the balance of microbial communities, which is critical for oral health. ↵↵The ability to form chains and pairs may facilitate intercellular communication and cooperation among bacterial cells, potentially influencing metabolic activities and interactions with the host immune system. Such arrangements may also provide advantages in colonization and persistence within the oral microbiome.↵↵Further investigation into the specific functional roles and interactions of S. oralis strain BCA18 within its ecosystem could reveal insights into its contributions to host health and disease dynamics, particularly in relation to oral microbiome stability and its implications for systemic health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 RJME00000000.1 Bac0019801 Streptococcus sanguinis strain KLC08 "Streptococcus sanguinis strain KLC08 is a Gram-positive, cocci-shaped bacterium that typically forms chains and pairs. As a nonsporulating organism, it displays a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. This strain is classified as host-associated, indicating a potential association with animal hosts, although specific host interactions are not detailed in the provided information.↵↵Given its facultative anaerobic nature, S. sanguinis strain KLC08 may play a significant role in the oral microbiome, where oxygen levels can fluctuate. Its ability to adapt to varying oxygen conditions suggests it could participate in complex microbial communities, contributing to the maintenance of oral health or potentially influencing dental biofilm dynamics. Understanding the interactions and behaviors of this strain within host-associated environments could provide valuable insights into its ecological role and the overall balance of microbial populations in the oral cavity." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 RJMJ00000000.1 Bac0019802 Streptococcus sanguinis strain KLC03 "Streptococcus sanguinis strain KLC03 is a Gram-positive, nonsporulating cocci that characteristically forms chains and pairs. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which may facilitate its survival in diverse host-associated habitats. ↵↵S. sanguinis is commonly found in the oral cavity, suggesting a potential role in the oral microbiome, where it may contribute to maintaining a balanced microbial community. The ability of this strain to grow in varying oxygen conditions may also enhance its adaptability to the fluctuating environments encountered within the host, particularly in biofilm-associated settings on dental surfaces.↵↵Understanding the traits of S. sanguinis strain KLC03 provides insight into its ecological niche within the oral microbiome and underscores its potential significance in both health and disease contexts. Further study of this strain may reveal its interactions with other microbial species and its influence on oral health, highlighting the complex dynamics of host-associated microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 RJML00000000.1 Bac0019803 Streptococcus sanguinis strain BCC31 "Streptococcus sanguinis strain BCC31 is a Gram-positive, nonsporulating coccus that typically occurs in chains or pairs. This strain is classified as a facultative anaerobe, indicating its capacity to grow in both the presence and absence of oxygen, which is a trait that may facilitate its survival in various environments within host organisms. ↵↵S. sanguinis is predominantly found in host-associated habitats, suggesting a close relationship with mammalian hosts, particularly within the oral cavity. Its presence in the oral microbiome highlights its potential role in the complex microbial community, where it may participate in interspecies interactions and contribute to the maintenance of oral health. ↵↵The nonsporulating nature of this strain further underscores its adaptation to its host-associated environment, where conditions may not favor sporulation. Understanding the traits of S. sanguinis strain BCC31 can provide insights into its ecological role, particularly in how it may influence dental biofilm formation and overall oral microbiome stability. Given the strain's structural characteristics and habitat preferences, it may also play a role in the competitive dynamics of the oral microbiota, which could have implications for health and disease states in its host." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 RJMM00000000.1 Bac0019804 Streptococcus sanguinis strain BCC28 "Streptococcus sanguinis strain BCC28 is a Gram-positive coccus that typically arranges itself in chains or pairs. This strain is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a host-associated microbe, S. sanguinis strain BCC28 is commonly found within the human oral cavity, where it plays a role in the complex microbial community of the dental plaque. ↵↵The ability of this strain to adapt to varying oxygen levels indicates its potential versatility in different microenvironments within the host. Understanding the specific ecological niches occupied by S. sanguinis strain BCC28 can provide insights into its interactions with other oral microbiota and its contributions to oral health. The facultative anaerobic lifestyle suggests that it may play a role in maintaining the microbial balance in the oral ecosystem, potentially influencing the colonization of other bacteria and the overall health of the oral microbiome. Further research into this strain's ecological functions may shed light on its role in oral health and disease dynamics." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 RJMN00000000.1 Bac0019805 Streptococcus sanguinis strain BCC16 "Streptococcus sanguinis strain BCC16 is a Gram-positive bacterium characterized by its cocci shape and tendency to form chains and pairs. This strain is nonsporulating and classified as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments. As a host-associated microbe, S. sanguinis strain BCC16 typically inhabits the oral cavity, where it plays a role in the complex microbial community found in dental plaque and contributes to the maintenance of oral health. ↵↵The facultative anaerobic nature of this strain allows it to thrive in the dynamic conditions of the oral microbiome, adapting to varying oxygen levels that result from metabolic activities of other microbial inhabitants. Importantly, its chain and pair arrangement may facilitate interactions with other bacteria and host tissues, potentially influencing biofilm formation and microbial diversity within the oral ecosystem. Understanding the ecological role of S. sanguinis strain BCC16 can provide insights into its contributions to oral health and the overall balance of the oral microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 RJMT00000000.1 Bac0019806 Streptococcus cristatus strain BCC51 "Streptococcus cristatus strain BCC51 is a Gram-positive coccus that exhibits facultative anaerobic growth. This strain is characterized by its spherical morphology, which is typical of the Streptococcus genus. Being a facultative anaerobe, S. cristatus strain BCC51 possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to thrive in a variety of ecological niches.↵↵Streptococcus species, including S. cristatus, are often found in the human oral cavity and gastrointestinal tract, where they play roles in the complex microbial community. The presence of S. cristatus strain BCC51 may contribute to the maintenance of oral health through its involvement in the balance of microbial populations, although the specifics of its interactions with other microbial species are not detailed in the provided traits.↵↵Given its Gram-positive nature, S. cristatus strain BCC51 may also be involved in the production of metabolites that influence pH and inhibit the growth of pathogenic bacteria in its environment. The adaptability of this strain to different oxygen levels suggests it may be well-suited to colonizing diverse habitats within the human body, participating in symbiotic relationships that could be crucial for human health. Further investigation into the specific ecological roles and interactions of S. cristatus strain BCC51 could provide valuable insights into its contributions to microbial homeostasis." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cristatus Positive Cocci Facultative anaerobe 45634 RJNA00000000.1 Bac0019807 Streptococcus sanguinis strain BCC39 "Streptococcus sanguinis strain BCC39 is a Gram-positive coccus that typically exhibits a characteristic arrangement in chains or pairs. This strain is nonsporulating and has been identified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Streptococcus sanguinis is primarily host-associated, indicating its prevalence in the microbiota of the host organism.↵↵The Gram-positive nature of this strain suggests a thick peptidoglycan layer, which is a hallmark of its cell wall structure, potentially contributing to its resilience in varied environments within the host. The arrangement of cells in chains or pairs may facilitate intercellular communication and cooperation among cells in the context of a complex microbial ecosystem.↵↵This strain's facultative anaerobic metabolism enables it to adapt to fluctuating oxygen levels, which is particularly advantageous in the diverse microenvironments found within host-associated habitats, such as the oral cavity. Here, it may play a role in the balance of the microbial community and interact with other species, influencing overall microbial dynamics. ↵↵In summary, Streptococcus sanguinis strain BCC39 exemplifies a versatile microbial inhabitant, capable of maintaining its presence and function in the complex interplay of host-associated ecosystems, potentially impacting host health and microbial community structure." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis Positive Cocci No 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains - Pairs Nonsporulating Human 1305 RJNC00000000.1 Bac0019808 Streptococcus mitis strain BCC15 "Streptococcus mitis strain BCC15 is a Gram-positive, non-sporulating coccus that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which is a characteristic trait of many species within the Streptococcus genus. As a host-associated microbe, S. mitis strain BCC15 is likely adapted to colonize specific niches within host organisms, potentially including human oral cavities and other mucosal surfaces, where it may play a role in microbial communities.↵↵The facultative anaerobic metabolism of S. mitis strain BCC15 suggests that it can thrive in varying oxygen conditions, which might confer advantages in fluctuating environments such as those found in the human mouth, where oxygen levels can change significantly. Furthermore, the chain and pair arrangement of the cells may facilitate communication and cooperation between individual bacteria, potentially enhancing their ability to form biofilms or interact with other microbial species in their habitat. This trait could be significant for understanding the complex dynamics of microbial communities in host-associated environments, where interspecies interactions may influence health and disease outcomes." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJNH00000000.1 Bac0019809 Streptococcus oralis strain BCA21 "Streptococcus oralis strain BCA21 is a Gram-positive cocci bacterium that typically exhibits a characteristic arrangement in pairs and chains. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which is advantageous for its survival in diverse habitats. Notably, S. oralis strain BCA21 is host-associated, suggesting a close relationship with host organisms, potentially residing in oral or other mucosal environments.↵↵The facultative anaerobic nature of S. oralis strain BCA21 allows it to adapt to varying oxygen levels present in the host, facilitating its metabolic versatility and survival in different niches. This adaptability may also contribute to its role in the complex microbial communities of the host, where it may engage in symbiotic relationships or compete with other microbes for resources. ↵↵Given its host-associated habitat, Streptococcus oralis strain BCA21 may play a significant role in the oral microbiome, contributing to the balance of microbial populations and potentially influencing host health. The unique combination of its Gram-positive structure, cocci shape, and facultative anaerobic lifestyle reflects its evolutionary adaptation to thrive in the dynamic oral environment, where fluctuations in oxygen and nutrient availability frequently occur. Understanding the traits of this strain can provide valuable insights into the broader ecological roles of Streptococcus species in the human microbiome." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 RJNI00000000.1 Bac0019810 Streptococcus mitis strain BCA16 "Streptococcus mitis strain BCA16 is a Gram-positive, nonsporulating coccus that commonly exists in chains and pairs. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, which is characteristic of many members of the Streptococcus genus. Its habitat is primarily host-associated, indicating a potential symbiotic relationship with its host organisms, often found in the oral cavity and upper respiratory tract of humans and other animals.↵↵The ability of Streptococcus mitis strain BCA16 to form chains and pairs facilitates its colonization and persistence within host environments, potentially contributing to its role in biofilm formation on mucosal surfaces. This structural arrangement may enhance its resistance to antimicrobial agents and immune responses, allowing for a stable presence in the host ecosystem.↵↵Further investigations into the ecological roles of Streptococcus mitis strain BCA16 could reveal insights into its interactions with other microbial species in the host microflora. Understanding these dynamics may provide a deeper comprehension of its contributions to oral health and disease, as well as its potential implications in host-microbe interactions. Overall, the adaptability of this strain to varying oxygen levels and its association with host organisms underscore its significance within microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJNQ00000000.1 Bac0019811 Streptococcus mitis strain BCC49 "Streptococcus mitis strain BCC49 is a Gram-positive coccus that typically forms chains or pairs and is characterized as a nonsporulating facultative anaerobe. This strain is part of the Streptococcus mitis group, which is known to inhabit host-associated environments, suggesting a close relationship with various host organisms. The facultative anaerobic nature of S. mitis strain BCC49 allows it to thrive in both oxygen-rich and oxygen-poor environments, a trait that may contribute to its versatility in colonizing different niches within the host.↵↵Due to its chain and pair arrangement, S. mitis strain BCC49 may exhibit unique interaction dynamics with host tissues and other microbial communities. This spatial arrangement can facilitate communication and nutrient exchange among adjacent cells, potentially enhancing its survival and adaptation in host-associated habitats. Understanding the ecological role of S. mitis strain BCC49 within its habitat may provide insights into the complex interplay of host-microbe interactions and the contributions of such microbes to the overall microbiome health. Given its association with hosts, further research could elucidate its role in maintaining microbial homeostasis and its potential implications in oral or systemic health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJOA00000000.1 Bac0019812 Streptococcus mitis strain BCC36 "Streptococcus mitis strain BCC36 is a Gram-positive coccus that typically arranges itself in chains or pairs, reflecting its characteristic morphology. As a nonsporulating organism, this strain thrives in host-associated environments, suggesting a close relationship with its host organisms. It exhibits facultative anaerobic metabolism, allowing it to adapt to varying oxygen levels within its ecological niches.↵↵This strain is part of the Streptococcus mitis group, commonly found in the oral cavity and upper respiratory tract of humans and other animals. Its ability to grow in both aerobic and anaerobic conditions enhances its survival in diverse habitats, where it may play a role in the complex microbiota of the host. The ecological implications of its facultative anaerobic nature may include participation in metabolic interactions with other microbial communities, influencing overall microbial dynamics and health in the host.↵↵Furthermore, the presence of Streptococcus mitis strain BCC36 in host-associated environments underscores its potential importance in symbiotic relationships, particularly in maintaining oral and respiratory health. Understanding its specific roles within these ecosystems could illuminate its contributions to host homeostasis and the intricate balance of microbial communities." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJOE00000000.1 Bac0019813 Streptococcus intermedius strain A2 "Streptococcus intermedius strain A2 is a Gram-positive coccus that commonly occurs in pairs and chains. This bacterium is primarily found in the oral cavity, including habitats such as dental plaques and brain abscesses. As a facultative anaerobe, S. intermedius strain A2 can thrive in both aerobic and anaerobic environments, providing it with a versatile metabolic capacity that may facilitate its survival in diverse niches within the human body.↵↵The presence of S. intermedius in dental plaques suggests its involvement in oral health, where it may play a role in the complex microbial communities associated with dental biofilms. Furthermore, its association with brain abscesses indicates that this strain may contribute to serious infections under specific conditions, particularly when oral bacteria gain access to the bloodstream or surrounding tissues, such as following dental procedures or in immunocompromised individuals.↵↵Understanding the ecological role of Streptococcus intermedius strain A2 in the oral cavity and its potential implications in human health is crucial for developing strategies to manage oral diseases and prevent systemic infections. The dual habitat of this organism highlights its adaptive capabilities, reflecting the complex interplay between oral microbiota and host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus intermedius Positive Cocci Facultative anaerobe brain abscesses; dental plaques; mouth; oral cavity "Pairs, Chains" Animal 1338 RJOM00000000.1 Bac0019814 Streptococcus gordonii strain BCC57 "Streptococcus gordonii strain BCC57 is a Gram-positive coccus that typically arranges itself in chains or pairs, reflecting its characteristic morphology. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, S. gordonii strain BCC57 can grow in both the presence and absence of oxygen, allowing it to occupy various niches within the host environment, such as the oral cavity.↵↵The ability of S. gordonii to thrive in a facultative anaerobic state suggests its potential role in various metabolic processes that may contribute to the microbial community structure within its habitat. Its presence in the oral microbiome could influence both the health of the host and the dynamics of microbial interactions, particularly in the formation of dental biofilms. Overall, the traits of S. gordonii strain BCC57 emphasize its adaptability and potential significance in host-associated ecosystems, particularly in relation to oral health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus gordonii Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1302 RJPE00000000.1 Bac0019815 Streptococcus oralis strain BCC26 "Streptococcus oralis strain BCC26 is a Gram-positive coccus that typically arranges in pairs or chains, reflecting its characteristic morphology within the Streptococcus genus. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, which suggests a versatile metabolic capability that may support its survival in various host-associated habitats.↵↵This strain is primarily found in association with host organisms, indicating a potential role in the microbial communities that inhabit mucosal surfaces, such as the oral cavity. Given its association with hosts, S. oralis strain BCC26 could contribute to the complex interplay of microbial interactions that influence oral health and disease. The ability to exist in pairs and chains may facilitate communication and cooperation among cells, potentially enhancing its resilience within the host environment.↵↵Understanding the specific ecological niche of S. oralis strain BCC26 may shed light on its functional roles in the microbiome, including the maintenance of oral homeostasis or its involvement in biofilm formation. Such insights could be vital for elucidating its contributions to the dynamics of host-associated microbial ecosystems." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 RJPI00000000.1 Bac0019816 Streptococcus cristatus strain BCA6 "Streptococcus cristatus strain BCA6 is a Gram-positive bacterium characterized by its coccal shape and facultative anaerobic metabolism. This strain, like other members of the Streptococcus genus, exhibits the ability to thrive in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels in its habitat. Streptococcus cristatus is typically found in diverse ecological niches, including the human oral cavity, where it may play a role in oral health and the maintenance of microbial balance.↵↵The cocci morphology of this strain contributes to its ability to form chains or pairs, a characteristic feature of the genus Streptococcus. This arrangement can facilitate cell-to-cell communication and may influence its interactions within a microbial community. The facultative anaerobic nature of strain BCA6 suggests that it can utilize different metabolic pathways depending on the availability of oxygen, which may enhance its survival in fluctuating environmental conditions.↵↵Moreover, the presence of Streptococcus cristatus in the oral microbiome underscores its potential contribution to oral ecology, where it may interact with other microbial species, influencing the overall health of the oral ecosystem. Understanding the traits of Streptococcus cristatus strain BCA6 can provide insights into its potential roles in both health and disease, as well as its adaptability in varied environments. Further research could elucidate the specific functions and interactions of this strain within its ecological niche." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cristatus Positive Cocci Facultative anaerobe 45634 RJPM00000000.1 Bac0019817 Streptococcus cristatus strain BCA4 "Streptococcus cristatus strain BCA4 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This strain, part of the Streptococcus genus, exhibits the capability to thrive in both aerobic and anaerobic environments, allowing it to adapt to various ecological niches. As a member of the oral microbiota, S. cristatus is significant in the context of human health, particularly in relation to the oral cavity where it may play a role in maintaining microbial balance. ↵↵The cocci morphology of S. cristatus strain BCA4 suggests potential interactions with other microbial species, which can influence its ecological dynamics. Its facultative anaerobic nature indicates that it can utilize different metabolic pathways depending on the availability of oxygen, which may provide a competitive advantage in fluctuating environments typical of oral ecosystems. ↵↵Given its traits, S. cristatus strain BCA4 may contribute to the overall homeostasis of the oral microbiome by participating in metabolic processes that support other commensal organisms. This characteristic underscores the importance of studying such strains to better understand their roles in health and disease, particularly in dental health and oral microbiome stability." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus cristatus Positive Cocci Facultative anaerobe 45634 RJPN00000000.1 Bac0019818 Streptococcus mitis strain BCC30 "Streptococcus mitis strain BCC30 is a Gram-positive coccus that typically arranges itself in chains or pairs, reflecting a characteristic morphology of the Streptococcus genus. As a nonsporulating organism, S. mitis strain BCC30 relies on its ability to thrive in various environments, particularly those associated with host organisms, indicating its adaptation to specific ecological niches within host-associated habitats. This strain demonstrates facultative anaerobic metabolism, allowing it to survive in both aerobic and anaerobic conditions, which may play a critical role in its ecological versatility and ability to colonize diverse tissues.↵↵The presence of S. mitis in the oral cavity and other mucosal surfaces suggests that it may participate in complex microbial communities, engaging in interactions with both host cells and other microorganisms. Its adaptability to different oxygen levels may facilitate its persistence in fluctuating environmental conditions, such as those found within the human microbiome. Understanding the ecological role of S. mitis strain BCC30 could provide insights into its potential contributions to oral health and its interactions within the microbial consortia that inhabit the human body. This strain's ability to coexist in dynamic environments underscores the intricate balance of microbial life and highlights the importance of host-associated organisms in maintaining health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJPV00000000.1 Bac0019819 Streptococcus mitis strain BCC22 "Streptococcus mitis strain BCC22 is a Gram-positive, nonsporulating coccus that commonly exhibits a characteristic arrangement in chains or pairs. As a facultative anaerobe, this strain can thrive in both aerobic and anaerobic environments, adapting its metabolic processes according to the availability of oxygen. Streptococcus mitis is typically associated with host organisms, suggesting its potential role in the microbiota of humans and other animals.↵↵This strain’s ability to form chains or pairs may facilitate its interaction with host tissues, possibly enhancing its colonization and persistence in specific niches. The facultative anaerobic nature of S. mitis strain BCC22 allows it to occupy diverse habitats within the host, adapting to varying oxygen levels that may be encountered in different tissues or during immune responses. ↵↵While the ecological roles of S. mitis are not fully elucidated, its presence in the host-associated microbiome suggests it may contribute to maintaining a balanced microbial community. The interactions of this strain with other microbial species and the host immune system may provide insights into its potential functions in health and disease contexts. Further studies could elucidate the specific dynamics of this strain within the microbiome and its implications for host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJPW00000000.1 Bac0019820 Streptococcus mitis strain BCC17 "Streptococcus mitis strain BCC17 is a Gram-positive, nonsporulating coccus that typically arranges itself in chains or pairs. This strain is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may facilitate its survival in diverse host-associated environments. ↵↵As a member of the Streptococcus genus, S. mitis is generally found within the human oral cavity and nasopharynx, suggesting its potential role in the human microbiome. Its host-associated habitat may influence its interactions with other microbial species and its contribution to the overall health of its host. The nonsporulating nature of this strain suggests that it relies on other survival strategies to endure unfavorable conditions rather than forming spores.↵↵Interestingly, Streptococcus mitis is often recognized for its close association with other oral streptococci, which may play a role in biofilm formation on dental surfaces. This characteristic can be critical for understanding its ecological niche within the oral microbiome and its interactions with both host tissues and other microbial inhabitants. The ability to adapt to varying oxygen levels may also confer advantages in fluctuating environments, such as those found in the human oral cavity, where oxygen availability can differ significantly." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJPX00000000.1 Bac0019821 Streptococcus mitis strain BCC08 "Streptococcus mitis strain BCC08 is a Gram-positive coccus characterized by its arrangement in chains and pairs. As a nonsporulating organism, this strain does not form spores, which is consistent with its adaptation to a host-associated habitat. Notably, S. mitis strain BCC08 exhibits facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments.↵↵This strain is part of the diverse genus Streptococcus, which is known for its presence in various ecological niches, particularly those associated with the human oral cavity and respiratory tract. The ability to grow in varying oxygen conditions suggests that S. mitis strain BCC08 may play a role in the microbial dynamics of the host environment, potentially influencing local microbiota composition and contributing to host health.↵↵Understanding the specific traits and metabolic capabilities of Streptococcus mitis strain BCC08 can provide insights into its ecological interactions within the host, particularly in how it may contribute to maintaining microbial balance or influencing host immune responses. Further research into the ecological roles of this strain could illuminate its contributions to health or disease in host-associated environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 RJPY00000000.1 Bac0019822 Ralstonia pseudosolanacearum strain Tg03 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pseudosolanacearum 1310165 RJTL00000000.1 Bac0019823 Chryseobacterium sp. G0240 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. G0240 2487066 RJTV00000000.1 Bac0019824 Kaistella haifensis strain F4391 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Kaistella Kaistella haifensis 421525 RJTY00000000.1 Bac0019825 Lonsdalea populi strain L6_4B 48 "Lonsdalea populi strain L6_4B 48 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 32.0°C. This strain belongs to the genus Lonsdalea, which is recognized for its association with various plant hosts. The Gram-negative classification indicates that L. populi strain L6_4B 48 possesses a thinner peptidoglycan layer and an outer membrane, characteristic of this group, which may influence its interactions with the environment and potential host organisms.↵↵The rod shape of L. populi strain L6_4B 48 is a common morphological feature among many bacteria, facilitating motility and nutrient absorption. While the specific ecological roles of this strain are not detailed, the optimal growth temperature suggests that it may thrive in temperate environments, potentially contributing to the microbial community associated with plant roots or decaying organic matter in such ecosystems.↵↵Interestingly, the adaptation of Lonsdalea populi strain L6_4B 48 to a moderate temperature of 32.0°C may reflect an evolutionary strategy to optimize metabolic processes in environments that experience fluctuating temperatures. This trait could enhance its ability to compete with other microbial species in its niche, thereby playing a significant role in the microbial dynamics of plant-associated communities. Further research into its specific interactions and ecological contributions would provide deeper insights into the functional role of this bacterium in its habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Lonsdalea Lonsdalea populi Gram-negative rod 32 mesophilic 1172565 RJUJ00000000.1 Bac0019826 Marinimicrobium koreense strain DSM 16974 "Marinimicrobium koreense strain DSM 16974 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain thrives optimally at a temperature of 37.0°C, suggesting its potential adaptation to warm aquatic environments. The distinct Gram-negative cell wall structure of Marinimicrobium koreense is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in various ecological niches.↵↵As a non-spore-forming organism, M. koreense may rely on other survival mechanisms to endure unfavorable conditions, indicating a specialized adaptation to its environment. The aerobic nature of this strain implies that it requires oxygen for its metabolic processes, positioning it within ecosystems where oxygen is readily available, such as marine habitats.↵↵Given its optimal growth temperature and aerobic requirements, Marinimicrobium koreense might play a significant role in biogeochemical cycles within marine ecosystems, particularly in nitrogen and carbon cycling. Its presence could indicate the health of the aquatic environments it inhabits, as well as contribute to the overall microbial diversity within these ecosystems. Further research could elucidate its specific interactions within the community of marine microorganisms and its potential applications in biotechnology or environmental monitoring." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Marinimicrobium Marinimicrobium koreense Gram-negative rod aerobic 37 mesophilic non-spore-forming 306545 RJUK00000000.1 Bac0019827 Stenotrophomonas maltophilia strain BIGb0219 "Stenotrophomonas maltophilia strain BIGb0219 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments. This strain exhibits a versatile habitat, suggesting its ability to adapt to various ecological niches. As a member of the genus Stenotrophomonas, it is characterized by its metabolic flexibility, enabling it to utilize a range of organic compounds as carbon sources, which may contribute to its widespread presence in diverse environments.↵↵The aerobic nature of strain BIGb0219 indicates its reliance on oxygen for growth and energy production, making it well-suited for environments where oxygen is readily available. This trait, along with its rod shape, facilitates efficient nutrient uptake and growth in competitive microbial communities. ↵↵The adaptability of Stenotrophomonas maltophilia strain BIGb0219 to multiple habitats emphasizes its potential role in biogeochemical cycling and environmental resilience. Understanding the ecological implications of this strain can provide insights into its interactions within microbial communities, particularly in relation to nutrient dynamics and ecosystem functioning. Further research into its physiological capabilities and interactions with other microorganisms may reveal additional ecological roles that contribute to the biodiversity and stability of its native environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 RJUP00000000.1 Bac0019828 Streptomyces sp. 840.1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 840.1 2485152 RJUU00000000.1 Bac0019829 Erwinia sp. JUb26 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia sp. JUb26 2485126 RJVB00000000.1 Bac0019830 Comamonas sp. BIGb0124 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. BIGb0124 2485130 RJVF00000000.1 Bac0019831 Inmirania thermothiophila strain DSM 100275 "Inmirania thermothiophila strain DSM 100275 is a Gram-negative, rod-shaped bacterium that exhibits a combination of metabolic versatility as an autotrophic, lithotrophic, and chemotrophic organism. This strain thrives optimally at a temperature of 45.0°C, indicating a preference for moderately high thermal environments. Notably, Inmirania thermothiophila is non-spore-forming, which may suggest a reliance on stable environmental conditions for survival and growth.↵↵As a facultative aerobe/anaerobe, this microbe possesses the ability to adapt its metabolism based on the availability of oxygen, allowing it to exploit a variety of ecological niches. The dual capability to utilize both aerobic and anaerobic metabolic pathways may enhance its survival in fluctuating conditions, potentially contributing to its resilience in diverse habitats.↵↵The metabolic characteristics of Inmirania thermothiophila strain DSM 100275 underscore its role in biogeochemical cycles, particularly in environments where inorganic compounds are available as energy sources. Its ability to thrive at elevated temperatures and utilize various metabolic strategies suggests that it may play a significant role in the cycling of nutrients in thermal ecosystems, such as hot springs or hydrothermal vents, where both temperature and chemical composition can vary significantly. This adaptability positions Inmirania thermothiophila as an intriguing subject for further research into microbial ecology and energy transformation in extreme environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Inmirania Inmirania thermothiophila Gram-negative rod motile facultative aerobe/anaerobe 45 autotroph; lithotroph; chemotroph thermophilic non-spore-forming 1750597 RJVI00000000.1 Bac0019832 Kitasatospora cineracea strain DSM 44780 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora cineracea 88074 RJVJ00000000.1 Bac0019833 Caminibacter pacificus strain DSM 27783 Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter pacificus 1424653 RJVK00000000.1 Bac0019834 UNVERIFIED_ORG: Pseudomonas psychrophila strain BIGb0477 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas psychrophila 122355 RJVM00000000.1 Bac0019835 Pseudomethylobacillus aquaticus strain H-5 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Methylophilaceae Pseudomethylobacillus Pseudomethylobacillus aquaticus 2676064 RJVP00000000.1 Bac0019836 Vibrio viridaestus strain LJC006 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio viridaestus 2487322 RJVQ00000000.1 Bac0019837 Microcystis aeruginosa FACHB-524 Bacillati Cyanobacteriota Cyanophyceae Chroococcales Microcystaceae Microcystis Microcystis aeruginosa 2486203 RJVW00000000.1 Bac0019838 Plantibacter flavus strain DSM 14012 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Plantibacter Plantibacter flavus 150123 RKHL00000000.1 Bac0019839 Raoultella terrigena strain BIGb0188 "Raoultella terrigena strain BIGb0188 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism. This microbe is found in diverse habitats, including fresh water, milk, various plant species, and soil environments, indicating a versatile ecological niche. The ability to thrive in both aerobic and anaerobic conditions suggests that R. terrigena strain BIGb0188 can adapt to fluctuating environmental oxygen levels, which may enhance its survival and competitive capabilities in natural ecosystems.↵↵The presence of this strain in fresh water and soil highlights its potential role in nutrient cycling and organic matter decomposition. Given its association with plants, it could also be involved in plant-microbe interactions, although specific symbiotic or pathogenic relationships remain to be defined. Further investigations into the ecological functions of R. terrigena strain BIGb0188 could provide insights into its contributions to ecosystem health, particularly in freshwater and agricultural systems where it coexists with other microbial communities. Thus, R. terrigena strain BIGb0188 exemplifies the complex interactions within microbial ecosystems, emphasizing the importance of such microorganisms in environmental processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella terrigena negative Rod facultative anaerobe Fresh water; milk; plants; soil 577 RKHP00000000.1 Bac0019840 Sinobacterium caligoides strain DSM 100316 "Sinobacterium caligoides strain DSM 100316 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 25.0°C. This organism belongs to a group characterized by its distinct morphological and physiological features, which contribute to its adaptability in various environments. The Gram-negative nature of S. caligoides suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer specific advantages in response to environmental stressors.↵↵As a rod-shaped bacterium, S. caligoides may exhibit a variety of metabolic pathways that enable it to thrive in its ecological niche. The optimal growth temperature indicates that this microbe is likely adapted to moderate temperature environments, which may influence its distribution and interactions within microbial communities. The physiological traits of S. caligoides may allow it to participate in biogeochemical cycles, potentially playing a role in nutrient cycling or organic matter decomposition in its habitat.↵↵Further investigation into the metabolic capabilities and ecological roles of S. caligoides could reveal insights into its interactions with other microorganisms and its contributions to ecosystem function. Understanding these dynamics may have implications for biotechnological applications, particularly in environments where temperature control is crucial for microbial activity." Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Sinobacterium Sinobacterium caligoides Gram-negative rod non-motile 25 mesophilic 933926 RKHR00000000.1 Bac0019841 Chryseobacterium nakagawai strain BIGb0215 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium nakagawai 1241982 RKHU00000000.1 Bac0019842 Rathayibacter sp. PhB127 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. PhB127 2485176 RKHW00000000.1 Bac0019843 Frigoribacterium sp. PhB24 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. PhB24 2485204 RKIC00000000.1 Bac0019844 Frigoribacterium sp. PhB118 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. PhB118 2485175 RKID00000000.1 Bac0019845 Frigoribacterium sp. PhB160 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frigoribacterium Frigoribacterium sp. PhB160 2485192 RKIE00000000.1 Bac0019846 Vibrio ponticus strain CAIM 1751 CAIM1751_224 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ponticus 265668 RKIK00000000.1 Bac0019847 Acinetobacter sp. FDAARGOS_515 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. FDAARGOS_515 2420307 RKIX00000000.1 Bac0019848 Bacillus sp. (in: firmicutes) strain FDAARGOS_509 "Bacillus sp. strain FDAARGOS_509, a Gram-positive rod-shaped bacterium, is classified within the Firmicutes phylum and is typically found in the rhizosphere, the region of soil directly influenced by plant roots. This strain exhibits an aerobic metabolism, indicating that it requires oxygen for growth and energy production. The presence of Bacillus sp. in the rhizosphere suggests a potential role in promoting plant health, possibly through mechanisms such as nutrient cycling or plant growth promotion. ↵↵Given its habitat, Bacillus sp. FDAARGOS_509 may interact with plant roots and other soil microorganisms, contributing to the complex dynamics of soil ecosystems. Such interactions could enhance nutrient availability or influence soil structure, ultimately impacting plant development and soil health. Further studies may reveal additional functional traits that elucidate the ecological roles of this strain within its native environment." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. (in: firmicutes) positive Rod aerobic thermophilic rhizosphere 1409 RKIY00000000.1 Bac0019849 Citrobacter amalonaticus strain FDAARGOS_490 "Citrobacter amalonaticus strain FDAARGOS_490 is a Gram-negative bacterium primarily found in the gut environment. As a facultative anaerobe, this strain is capable of thriving in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within the gastrointestinal tract. This adaptability is crucial for its survival and function in a complex microbial community, where fluctuations in oxygen availability can occur due to dietary changes and metabolic activities of other gut microorganisms.↵↵The presence of C. amalonaticus in the gut suggests it may play a role in the fermentation of carbohydrates and the metabolism of various organic compounds, potentially influencing gut health and microbial dynamics. While its specific interactions and contributions to the gut microbiome are not detailed in the available data, the ability of facultative anaerobes like C. amalonaticus to utilize different metabolic pathways highlights their importance in maintaining ecological balance within the gut ecosystem. Further research could elucidate the specific roles of this strain in nutrient cycling and its interactions with other gut inhabitants." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter amalonaticus Negative Facultative anaerobe gut 35703 RKJA00000000.1 Bac0019850 Escherichia coli strain FDAARGOS_539 "Escherichia coli strain FDAARGOS_539 is a Gram-negative rod-shaped bacterium that can be found in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, enabling it to thrive in various oxygen conditions, which is characteristic of many members of the Enterobacteriaceae family. The optimal growth temperature for FDAARGOS_539 is 37.0°C, a temperature that corresponds with the typical mammalian host body temperature, suggesting an adaptation to a host-associated habitat.↵↵As a member of the Escherichia genus, FDAARGOS_539 is likely to share common traits with other E. coli strains, including the ability to utilize a range of substrates for growth. However, the specific ecological roles and interactions of this strain within its host environment remain to be detailed in the literature. Given its association with host organisms, it could be inferred that FDAARGOS_539 may play a role in the gut microbiome, contributing to nutrient metabolism and possibly influencing host health.↵↵The facultative anaerobic nature of this strain, combined with its optimal growth temperature, indicates a potential versatility that allows it to adapt to fluctuating environmental conditions within its host. This adaptability may provide insights into the ecological dynamics of E. coli strains in gut environments, particularly in response to changes in oxygen availability and nutrient supply." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RKJN00000000.1 Bac0019851 Yersinia pestis strain FDAARGOS_605 tig00000001_pilon "Yersinia pestis strain FDAARGOS_605 tig00000001_pilon is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, it relies on organic compounds for energy, which suggests a versatile dietary capability that may enable it to inhabit diverse ecological niches.↵↵The optimal growth temperature for this strain is approximately 28.0°C, indicating a preference for moderate temperatures that may be reflective of its environmental adaptations. The ability to survive and proliferate at this temperature may allow Yersinia pestis strain FDAARGOS_605 to exploit various habitats, potentially including soil, water, and animal hosts.↵↵The adaptability of this strain to different oxygen levels, coupled with its heterotrophic nature, suggests a potential role in nutrient cycling within its ecosystems. Furthermore, the ability to exist as single cells may facilitate interactions with other microbial communities and contribute to its ecological versatility. Overall, these traits underscore the importance of environmental factors in shaping the life history and ecological interactions of Yersinia pestis strain FDAARGOS_605." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pestis Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 632 RKJO00000000.1 Bac0019852 Francisella tularensis strain FDAARGOS_597 "Francisella tularensis strain FDAARGOS_597 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells. This strain, like others in its genus, is an aerobic organism, indicating that it requires oxygen for growth and metabolism. While the specific ecological niche of strain FDAARGOS_597 is not detailed, its classification as an aquatic microbe suggests an adaptation to freshwater, marine, or possibly brackish environments.↵↵The morphological and physiological characteristics of F. tularensis, including its single-cell arrangement and aerobic metabolism, may influence its interactions within aquatic ecosystems. As an aquatic organism, it may play a role in nutrient cycling or interact with other microbial communities, although the specifics of these interactions remain to be fully elucidated. The ecological implications of its presence in aquatic habitats could provide insights into the dynamics of microbial populations and their roles in maintaining ecosystem health. ↵↵Understanding the traits of Francisella tularensis strain FDAARGOS_597 can contribute to a broader knowledge of its ecology and potential interactions in aquatic environments, emphasizing the importance of studying such microbes for insights into aquatic microbial diversity and function." Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella tularensis Negative Rod No 1 2 Aerobe Mesophilic Aquatic Free living Singles 263 RKJR00000000.1 Bac0019853 Shewanella psychromarinicola strain R106 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella psychromarinicola 2487742 RKKB00000000.1 Bac0019854 Rhodococcus spongiicola strain LHW50502 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus spongiicola 2487352 RKLN00000000.1 Bac0019855 Prescottella agglutinans strain CCTCC AB2014297 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Prescottella Prescottella agglutinans 1644129 RKLP00000000.1 Bac0019856 Enterococcus faecalis strain P7 C A21 2872_239 "Enterococcus faecalis strain P7 C A21 2872_239 is a Gram-positive, nonsporulating cocci that thrives at an optimal temperature of 37.0 °C. As a facultative anaerobe, this strain can utilize both aerobic and anaerobic metabolic pathways, allowing it to adapt to varying oxygen levels in its habitat. Its classification as a chemoorganotroph indicates that it derives energy from organic compounds, which is characteristic of many Enterococcus species.↵↵Enterococcus faecalis is known to inhabit diverse environments, contributing to its ecological versatility. This strain's ability to grow in multiple habitats suggests it may play various roles in microbial communities, potentially influencing nutrient cycling and interactions with other microorganisms. The metabolic flexibility afforded by its facultative anaerobic nature allows E. faecalis strain P7 C A21 2872_239 to thrive in both oxygen-rich and oxygen-poor environments, highlighting its ecological adaptability.↵↵Overall, the traits of Enterococcus faecalis strain P7 C A21 2872_239 reflect its resilience and potential ecological significance, particularly in environments where organic substrates are available, thus contributing to its role in microbial dynamics and ecosystem functions." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 RKOR00000000.1 Bac0019857 Enterococcus gallinarum strain P17 C A7 2823_25 "Enterococcus gallinarum strain P17 C A7 2823_25 is a Gram-positive coccus that exhibits facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is primarily found in the intestine and soil, where it may play a role in nutrient cycling and microbial community dynamics. The coccoid morphology of E. gallinarum suggests its adaptation to diverse habitats, allowing it to form aggregates or biofilms that could enhance its survival in fluctuating environmental conditions.↵↵As a facultative anaerobe, Enterococcus gallinarum strain P17 C A7 2823_25 can utilize fermentation pathways under anaerobic conditions while also being capable of aerobic respiration when oxygen is present. This metabolic flexibility may confer advantages in competing with other microbial species in the intestine and soil, particularly in environments with varying oxygen levels. The strain's presence in the intestine suggests a potential role in gut microbiota, possibly influencing digestion or contributing to the overall health of the host organism.↵↵Overall, the ability of Enterococcus gallinarum strain P17 C A7 2823_25 to inhabit both intestinal and soil environments highlights its ecological versatility, suggesting it may contribute to both gut health and soil fertility, thereby underscoring the interconnectedness of microbial life across different ecosystems." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus gallinarum Positive Cocci Facultative anaerobe intestine; soil Animal 1353 RKPO00000000.1 Bac0019858 Pacificibacter maritimus strain DSM 104731 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pacificibacter Pacificibacter maritimus 762213 RKQK00000000.1 Bac0019859 Vulcaniibacterium tengchongense strain DSM 25623 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Vulcaniibacterium Vulcaniibacterium tengchongense 1273429 RKQN00000000.1 Bac0019860 Streptomyces sp. Ag109_G2-6 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Ag109_G2-6 2485154 RKRC00000000.1 Bac0019861 Neisseria animalis strain DSM 23392 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria animalis microaerophile 492 RKRJ00000000.1 Bac0019862 Abyssicoccus albus strain DSM 29158 Bacillati Bacillota Bacilli Caryophanales Abyssicoccaceae Abyssicoccus Abyssicoccus albus 1817405 RKRK00000000.1 Bac0019863 Pseudaminobacter arsenicus strain CB3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Borborobacter Borborobacter arsenicus 1851146 RKST00000000.1 Bac0019864 Escherichia coli strain PNUSAE019581 "Escherichia coli strain PNUSAE019581 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the normal body temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain PNUSAE019581 can grow in both the presence and absence of oxygen, allowing it to occupy diverse environments within the gastrointestinal tract of its hosts.↵↵The ability to thrive in variable oxygen conditions may confer an ecological advantage, enabling this strain to adapt to different niches within the host. Furthermore, the association with host organisms indicates a likely role in the complex microbiota, where it may contribute to nutrient processing and maintenance of gut health. This adaptability and its specific habitat preference highlight the importance of E. coli strain PNUSAE019581 in the broader context of microbial ecology and host interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RLEV00000000.2 Bac0019865 Chitinophaga barathri strain YLT18 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga barathri 1647451 RMBX00000000.1 Bac0019866 Salmonella enterica strain PNUSAS059842 "Salmonella enterica strain PNUSAS059842 is a Gram-negative, spirilla-shaped bacterium that typically exists in chains or as single cells. This strain is a chemoorganotroph, indicating that it derives its energy from organic compounds, and is adapted to a microaerophilic environment, meaning it thrives in conditions with reduced oxygen levels. Its optimal growth temperature is around 37.0°C, aligning with the physiological temperature of many mammalian hosts, suggesting a potential association with warm-blooded organisms.↵↵Given its host-associated habitat, S. enterica PNUSAS059842 may play a role in specific ecological niches within its host, possibly influencing the microbiome balance or engaging in interactions with other microbial communities. The microaerophilic nature of this strain suggests that it may occupy environments within the host that are less accessible to fully aerobic or anaerobic microbes, which could have implications for its survival and metabolic activities. Further studies would be necessary to elucidate the specific ecological roles and interactions of this strain within its host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RMTL00000000.1 Bac0019867 Streptococcus oralis strain BCC58 "Streptococcus oralis strain BCC58 is a Gram-positive, facultative anaerobic cocci that typically exists in pairs or chains. This strain is part of the oral microbiota, highlighting its adaptation to host-associated habitats, where it can thrive in various environments within the human body. ↵↵As a member of the Streptococcus genus, S. oralis plays a role in the complex microbial communities present in the oral cavity, which are essential for maintaining oral health and influencing systemic health. The facultative anaerobic nature of this strain allows it to survive in both aerobic and anaerobic conditions, a trait that is particularly advantageous in the dynamic environment of the mouth, where fluctuations in oxygen levels can occur due to various physiological activities, such as eating and tongue movement.↵↵The ability of S. oralis strain BCC58 to form pairs and chains may facilitate its colonization and persistence on mucosal surfaces, contributing to the stability of the oral microbiome. Furthermore, its Gram-positive cell structure suggests an inherent resistance to certain environmental stresses, which may enhance its survival and competitive edge in host-associated niches. Understanding the traits of S. oralis strain BCC58 could provide valuable insights into the role of oral microbiota in health and disease, as well as potential interactions with other microbial species in the host environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 RMVJ00000000.1 Bac0019868 Streptococcus oralis strain BCC02 "Streptococcus oralis strain BCC02 is a Gram-positive coccus that typically arranges itself in pairs or chains. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. S. oralis is known to inhabit host-associated environments, suggesting a close association with human or animal hosts, where it may contribute to the complex microbial communities found in various niches, such as the oral cavity.↵↵The facultative anaerobic nature of S. oralis strain BCC02 allows it to adapt to fluctuating oxygen levels, a trait that is advantageous in the dynamic environments of the host. This adaptability may enable the strain to thrive in biofilms, particularly in areas where oxygen concentration can vary, such as dental plaque. The presence of S. oralis in these biofilms highlights its potential role in maintaining oral health, although further research is needed to fully elucidate its interactions within the oral microbiome.↵↵Understanding the specific traits of S. oralis strain BCC02 offers insights into its ecological role and potential contributions to host-associated microbial dynamics. The strain's adaptability to different oxygen conditions and its arrangement in pairs and chains may facilitate cooperative interactions with other microbial species, underscoring the complexity and interdependence of microbial communities within host environments." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Pairs - Chains Human 1303 RMVL00000000.1 Bac0019869 Escherichia coli strain PNUSAE019755 "Escherichia coli strain PNUSAE019755 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain PNUSAE019755 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to survive in varied oxygen environments within its host.↵↵The Gram-negative classification of this strain suggests the presence of a distinctive outer membrane structure, which is characteristic of the Enterobacteriaceae family. This membrane can play a critical role in the bacterium's interactions with its environment, including host immune responses and antibiotic resistance mechanisms. The arrangement of cells in pairs or as singles may also influence its ecological dynamics, potentially affecting its colonization patterns and interactions with other microbial species within the host.↵↵The facultative anaerobic nature of E. coli strain PNUSAE019755 implies a versatile metabolic capability that enhances its survival in diverse conditions, illustrating its potential role in the gut microbiome where fluctuating oxygen levels can occur. This adaptability not only underscores the strain’s resilience but also highlights its potential contributions to nutrient cycling and host health within the complex ecosystem of the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RNHF00000000.2 Bac0019870 Escherichia coli strain PNUSAE019399 "Escherichia coli strain PNUSAE019399 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both the presence and absence of oxygen, a trait that enhances its adaptability within various environments. The optimal growth temperature for strain PNUSAE019399 is approximately 37.0°C, aligning closely with the physiological temperature of warm-blooded hosts, which suggests a potential association with mammalian hosts.↵↵The habitat of this strain is defined as host-associated, indicating a likely symbiotic or commensal relationship with its host organisms. As a member of the Enterobacteriaceae family, E. coli strains are commonly found in the intestines of humans and other animals, where they play significant roles in digestion and nutrient absorption. The facultative anaerobic nature of strain PNUSAE019399 may facilitate its survival in diverse microenvironments within the host, ranging from oxygen-rich intestinal lumens to more anaerobic environments in deeper intestinal niches.↵↵The adaptability of this strain to varying oxygen levels and its presence in specific host-associated habitats may provide insights into its metabolic versatility and potential roles in microbial community dynamics. Understanding these traits can contribute to elucidating the ecological functions of E. coli strains within their hosts, particularly in relation to nutrient cycling and microbial interactions in the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RNIM00000000.2 Bac0019871 Escherichia coli strain CVM N17EC0994 "Escherichia coli strain CVM N17EC0994 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain has an optimal growth temperature of 37.0 °C, which aligns with the physiological temperature of human and animal hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli CVM N17EC0994 has the metabolic flexibility to thrive in both aerobic and anaerobic environments, allowing it to exploit various niches within the host's microbiome. ↵↵The characteristics of this strain suggest its potential role in the complex dynamics of microbial communities associated with hosts. The ability to grow under different oxygen conditions may contribute to its survival and competitive advantage in diverse environments, particularly within the gastrointestinal tract where oxygen availability can fluctuate. This adaptability may also facilitate interactions with other microbial species, possibly influencing the overall health and metabolic functions of the host. Further exploration of E. coli strain CVM N17EC0994 could provide insights into its ecological roles and contributions to host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RNTS00000000.1 Bac0019872 Salmonella enterica strain PNUSAS059687 "Salmonella enterica strain PNUSAS059687 is a Gram-negative bacterium characterized by its spirilla shape, which can be observed both as singles and in chains. This strain is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, and exhibits a microaerophilic oxygen requirement, thriving in environments with reduced oxygen levels. The optimal growth temperature for this strain is approximately 37.0 °C, which aligns with the typical conditions found within the host-associated habitats it occupies.↵↵Given its host-associated habitat, S. enterica strain PNUSAS059687 likely plays a role in interactions with its host organism, potentially influencing the host's microbiome dynamics. The strain's microaerophilic nature suggests it may inhabit niches within the host where oxygen levels are limited, possibly contributing to the metabolic processes occurring within those specific environments. Further investigation into the ecological roles of this strain could provide insights into its interactions within the host and its potential impacts on host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RNUA00000000.1 Bac0019873 Escherichia coli strain CVM N17EC1228 "Escherichia coli strain CVM N17EC1228 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli CVM N17EC1228 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to adapt to varying oxygen levels within its ecological niche.↵↵The ability to inhabit host-associated environments suggests that this strain may play a role in the complex microbiota of its host, contributing to various biological functions such as digestion and nutrient absorption. Additionally, the facultative anaerobic nature of E. coli CVM N17EC1228 may enable it to colonize different anatomical sites within its host, where oxygen availability can fluctuate. This adaptability is a significant trait for survival in diverse environments, highlighting the ecological versatility of this strain within the broader context of microbial communities associated with living organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RNWK00000000.1 Bac0019874 Escherichia coli strain CVM N17EC1028 "Escherichia coli strain CVM N17EC1028 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is indicative of its versatility in various host-associated habitats. It prefers an optimal growth temperature of 37.0°C, aligning with the typical body temperature of many warm-blooded hosts, suggesting a potential adaptation to live in association with these organisms. ↵↵The ability of strain CVM N17EC1028 to exist in pairs or singles may influence its interactions with host organisms and its role in the host microbiome. The facultative anaerobic nature of this strain could also play a significant role in its ecological niche, allowing it to metabolize substrates effectively under varying oxygen conditions. Understanding the growth characteristics and ecological adaptations of E. coli strain CVM N17EC1028 may provide insights into its potential functions in the microbiome of its host, as well as its contributions to metabolic processes and nutrient cycling within that environment. The strain's adaptability indicates its potential resilience in fluctuating conditions, which is critical for survival in competitive microbial ecosystems associated with hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RNWQ00000000.1 Bac0019875 Escherichia coli strain CVM N17EC1046 "Escherichia coli strain CVM N17EC1046 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for CVM N17EC1046 is 37.0 °C, which aligns with the physiological temperature of warm-blooded hosts, suggesting an association with such organisms.↵↵Being host-associated, E. coli strain CVM N17EC1046 likely occupies niches within the gastrointestinal tracts of its hosts, where it can play various roles, from symbiotic interactions to potential opportunism. The strain's adaptability to fluctuating oxygen levels may enhance its survival in diverse microenvironments within the host, facilitating its persistence and interaction with other microbial communities.↵↵The distinct pairing of cells may have implications for its ecological interactions, potentially influencing its ability to form biofilms or engage in cell signaling processes that are critical for survival and colonization in host environments. Understanding the specific habitat and metabolic capabilities of this strain can shed light on its ecological role and its interactions with the host microbiome, as well as broader implications for microbial ecology in host-associated systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RNWT00000000.1 Bac0019876 Escherichia coli strain CVM N17EC1199 "Escherichia coli strain CVM N17EC1199 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles and is categorized as a facultative anaerobe. This strain thrives at an optimal temperature of 37.0°C, which is consistent with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. ↵↵As a member of the E. coli species, strain CVM N17EC1199 likely occupies various niches within the gastrointestinal tracts of its hosts, contributing to the complex microbial community. The facultative anaerobic metabolism allows this strain to survive in both oxygen-rich and oxygen-poor environments, enabling it to exploit diverse ecological conditions within the host. ↵↵Given its rod shape and cell arrangement, strain CVM N17EC1199 may engage in specific interactions with host tissues or other microbial inhabitants, potentially influencing nutrient cycling or microbial competition within its habitat. Understanding the physiological traits of this strain can enhance our knowledge of its role in the microbiome and its potential responses to environmental changes within the host ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RNXE00000000.1 Bac0019877 Escherichia coli strain CVM N17EC0248 "Escherichia coli strain CVM N17EC0248 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitats.↵↵E. coli strains are commonly found in the intestines of warm-blooded organisms, where they play a crucial role in the gut microbiome. The host-associated nature of strain CVM N17EC0248 suggests its adaptation to life within a host, potentially contributing to various metabolic processes and nutrient cycling. The ability to survive in both oxygen-rich and low-oxygen environments enhances its versatility in colonizing different niches within the host's gastrointestinal tract.↵↵Understanding the traits of E. coli strain CVM N17EC0248 provides insight into its potential ecological interactions and functional role within the host microbiome, highlighting the importance of such strains in maintaining gut health and influencing host metabolism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 ROCK00000000.1 Bac0019878 Campylobacter coli strain FSIS11815009 "Campylobacter coli strain FSIS11815009 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement. This strain is part of the Campylobacter genus, which is known for its spiral-shaped morphology and motility due to a single polar flagellum. As a microaerophile, C. coli thrives in environments with reduced oxygen levels, typically around 5-10% oxygen concentration, which distinguishes it from obligate aerobes and anaerobes. ↵↵Campylobacter species, including C. coli, are often associated with gastrointestinal infections in humans and animals, although specific pathogenicity traits of strain FSIS11815009 are not detailed here. The ability of this strain to survive and proliferate in microaerobic conditions suggests its potential adaptation to specific niches within the gastrointestinal tract of its hosts, where such oxygen levels are prevalent. ↵↵Additionally, the Gram-negative nature of C. coli indicates the presence of an outer membrane rich in lipopolysaccharides, which can play a role in the bacterium's environmental interactions and potential resistance to certain antimicrobial agents. Understanding the traits of Campylobacter coli strain FSIS11815009 contributes to our broader knowledge of Campylobacter species and their roles in microbial ecosystems, particularly in relation to food safety and public health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 ROIA00000000.1 Bac0019879 Escherichia coli strain PNUSAE019721 "Escherichia coli strain PNUSAE019721 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting a close association with host environments. As a facultative anaerobe, E. coli strain PNUSAE019721 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to adapt to varying oxygen levels within its habitat.↵↵The designation of this strain as host-associated indicates its potential prevalence in the gastrointestinal tracts of animals, where it may play a role in nutrient digestion and absorption. This ecological niche highlights the bacterium's importance in the microbiome, contributing to the maintenance of gut health and influencing host digestion. Given its adaptability to different oxygen conditions, E. coli strain PNUSAE019721 may also engage in various interactions with other microbial communities in the host, underscoring the complexity and dynamism of host-associated microbiota.↵↵Further research into the specific roles and interactions of E. coli strain PNUSAE019721 within its ecological niche could provide valuable insights into the overall health of its host and the functional dynamics of gut microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 ROIZ00000000.1 Bac0019880 Campylobacter jejuni strain PNUSAC006287 "Campylobacter jejuni strain PNUSAC006287 is a Gram-negative bacterium characterized by its spiral shape and the ability to form chains or exist as single cells. This strain is a microaerophile, indicating its requirement for reduced oxygen levels for optimal growth, which is typical for many Campylobacter species. Notably, C. jejuni strain PNUSAC006287 is capable of thriving across a range of habitats, suggesting its ecological versatility. ↵↵As a heterotrophic organism, it derives its energy from organic compounds, reflecting its adaptability to various environments where organic matter is available. The optimal temperature for growth is not specified in the provided data, but members of the Campylobacter genus typically thrive within mesophilic ranges, often associated with warm-blooded hosts. ↵↵The unique combination of traits, particularly its microaerophilic nature and heterotrophic metabolism, may enable C. jejuni strain PNUSAC006287 to occupy niches where other microorganisms struggle, potentially including environments with fluctuating oxygen levels or specific organic substrates. This adaptability could play a significant role in its persistence in diverse ecosystems, highlighting the ecological importance of this strain within the microbial community." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 ROKC00000000.1 Bac0019881 Enterococcus faecalis strain EF2597 "Enterococcus faecalis strain EF2597 is a Gram-positive cocci that plays a significant role in various ecological niches due to its facultative anaerobic metabolism and chemoorganotrophic energy source. This strain is nonsporulating and thrives optimally at a temperature of 37.0°C, which aligns with its presence in warm-blooded hosts, including humans. Enterococcus faecalis is known for its ability to adapt to different habitats, which may include both clinical and environmental settings, underscoring its versatile nature.↵↵As a facultative anaerobe, EF2597 can grow in both the presence and absence of oxygen, allowing it to inhabit diverse environments ranging from the gastrointestinal tracts of mammals to various human-associated surfaces. The metabolic flexibility of this strain may contribute to its persistence in these varied habitats, where it can utilize organic matter as a substrate.↵↵The unique combination of traits, particularly its optimal growth temperature and its nonsporulating characteristic, suggests that Enterococcus faecalis strain EF2597 is well-adapted to life within warm, nutrient-rich environments. This adaptability may facilitate its role in microbial communities, influencing nutrient cycling and the dynamics of microbial interactions in both natural and anthropogenic ecosystems. Understanding the ecological roles of such strains can provide insights into their contributions to microbial diversity and the stability of microbial communities." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 RPCC00000000.1 Bac0019882 Enterococcus faecalis strain EF5152 "Enterococcus faecalis strain EF5152 is a Gram-positive, nonsporulating coccus that thrives optimally at 37.0°C and demonstrates facultative anaerobic metabolism as a chemoorganotroph. This strain is part of a diverse genus known for its ability to inhabit multiple environments, indicating its ecological versatility. ↵↵As a facultative anaerobe, E. faecalis can adapt to varying oxygen levels, allowing it to exploit diverse niches within host organisms and environmental settings. This metabolic flexibility may contribute to its persistence in both human-associated and natural ecosystems. The strain's nonsporulating nature suggests that it relies on alternative survival strategies, potentially including biofilm formation or metabolic resilience under varying conditions.↵↵The habitat versatility of E. faecalis EF5152, combined with its metabolic characteristics, highlights its potential role in nutrient cycling and interactions within microbial communities. Such traits may enable it to engage in complex symbiotic or competitive relationships, influencing microbial dynamics in various ecological contexts. Further research into its ecological roles could provide insights into its contributions to both health and environmental microbiology." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 RPCN00000000.1 Bac0019883 Enterococcus faecalis strain EF5473 "Enterococcus faecalis strain EF5473 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic metabolism, with an optimal growth temperature of 37.0°C. This strain belongs to the Enterococcus genus, which is characterized by its ability to utilize organic compounds as energy sources, categorizing it as a chemoorganotroph. E. faecalis strains, including EF5473, are known to inhabit diverse environments, reflecting their adaptability to various ecological niches.↵↵As a facultative anaerobe, E. faecalis strain EF5473 can thrive in both the presence and absence of oxygen, allowing it to colonize a wide range of habitats. This versatility in oxygen usage potentially facilitates its survival in fluctuating environments and contributes to its prevalence in both natural and human-associated ecosystems.↵↵Given its broad habitat range and metabolic flexibility, Enterococcus faecalis strain EF5473 can play a significant role in nutrient cycling within its environments. This adaptability may also influence microbial community dynamics, potentially impacting both beneficial and detrimental interactions within its ecological contexts." Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 RPCO00000000.1 Bac0019884 Aureibaculum marinum strain BH-SD17 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aureibaculum Aureibaculum marinum 2487930 RPFJ00000000.1 Bac0019885 Neisseria weixii strain 10009 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria weixii 1853276 RPFL00000000.1 Bac0019886 Helicobacter pylori strain 22388 "Helicobacter pylori strain 22388 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions commonly found in the human gastric environment. H. pylori strain 22388 is microaerophilic, indicating that it requires reduced levels of oxygen for growth, a trait that supports its adaptation to the unique atmospheric conditions of the stomach, where oxygen concentrations are lower than in the external environment.↵↵As a host-associated microbe, H. pylori strain 22388 is found within the gastric mucosa of its host, where it plays a notable role in the microbial ecosystem. The bacterium's ability to colonize this niche allows it to interact with the host's immune system and gastric secretions, which can influence the overall health of the stomach. Understanding the specific traits of strain 22388 provides insights into its potential roles in gastric microbiota composition and its interactions with host physiology, highlighting the complex relationships that exist between microbes and their host environments." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RPFP00000000.1 Bac0019887 Helicobacter pylori strain 22345 "Helicobacter pylori strain 22345 is a Gram-negative microbe characterized by its spirilla shape and a tendency to exist as single cells. This strain thrives optimally at 37.0°C, which aligns with its typical habitat, where it is associated with host organisms. H. pylori strain 22345 exhibits a microaerophilic oxygen requirement, indicating that it requires lower levels of oxygen for growth than are present in the atmosphere, which is a common trait among species in the Helicobacter genus.↵↵The microbe's spirilla morphology may contribute to its motility, facilitating its colonization within the gastric environment of the host. This motility is critical for its survival and persistence in the acidic conditions of the stomach. The association of H. pylori strain 22345 with hosts suggests a specialized adaptation to a specific niche, likely offering advantages in nutrient acquisition and evasion from host immune responses.↵↵Understanding the precise ecological roles of H. pylori strain 22345 within its host can provide insights into its interactions with the host’s microbiome and immune system. This could lead to broader implications for understanding the dynamics of microbial communities in the gastrointestinal tract and their potential impact on host health." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RPFQ00000000.1 Bac0019888 Helicobacter pylori strain 1071 "Helicobacter pylori strain 1071 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically exists as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average human body temperature, indicating its adaptation to a host-associated habitat. ↵↵H. pylori is primarily found in the gastric mucosa of humans and is known for its ability to survive in the acidic environment of the stomach, a trait that enhances its colonization potential in gastric tissues. The microaerophilic nature of strain 1071 suggests that it requires lower levels of oxygen for growth than are present in the atmosphere, which aligns with its habitat in the gastrointestinal tract where oxygen concentrations are reduced.↵↵The unique morphological characteristic of H. pylori being spirilla may facilitate its motility through the viscous gastric mucus, potentially aiding in its establishment and persistence in the host environment. This motility, combined with its specific oxygen requirements and temperature preference, underscores the bacterium's evolutionary adaptations to the human gastric milieu. Understanding these traits may provide insights into its ecological role within the gastrointestinal ecosystem and its interactions with the host's immune system." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RPFR00000000.1 Bac0019889 Helicobacter pylori strain 1057 "Helicobacter pylori strain 1057 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe is typically found in host-associated environments, where it thrives optimally at a temperature of 37.0 °C. As a microaerophilic organism, H. pylori strain 1057 requires reduced levels of oxygen for growth, which aligns with its adaptation to the gastric environment of its hosts. ↵↵The microbe’s unique morphology and physiological requirements enable it to inhabit specific niches within the gastrointestinal tract, where it may play a role in the complex interactions between the host and its microbial community. Investigating the ecological dynamics of H. pylori strain 1057 could provide insights into its potential roles in host health, particularly in relation to gastric flora and the maintenance of gastric pH levels. Understanding these interactions may offer a broader perspective on its ecological significance and evolutionary adaptations in host-associated habitats." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 RPFT00000000.1 Bac0019890 Streptomyces sp. ADI91-18 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ADI91-18 1522755 RPGS00000000.1 Bac0019891 Priestia endophytica strain FH5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Priestia Priestia endophytica 135735 RPHD00000000.1 Bac0019892 Paenibacillus xylanexedens strain EDO6 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus xylanexedens 528191 RPHH00000000.1 Bac0019893 Sinorhizobium meliloti strain USDA1883 "Sinorhizobium meliloti strain USDA1883 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 25.0°C and is classified as an aerobic organism. This strain, a member of the Sinorhizobium genus, is notable for its ability to engage in symbiotic relationships with leguminous plants, particularly alfalfa, contributing to nitrogen fixation, which is critical for soil fertility and plant growth.↵↵The habitat of S. meliloti strain USDA1883 is diverse, allowing it to adapt to various environmental conditions. This adaptability may enhance its role in agricultural ecosystems, where it can improve nitrogen availability in soils through its symbiotic interactions. As an aerobic microbe, it relies on oxygen to metabolize organic compounds, which further supports its survival and functionality in aerobic environments.↵↵Given its essential role in nitrogen fixation and its broad habitat range, S. meliloti strain USDA1883 exemplifies the intricate relationships between soil bacteria and plants, showcasing how microorganisms contribute significantly to nutrient cycling and ecosystem health. Understanding the traits of this strain can provide insights into optimizing agricultural practices and enhancing soil management strategies." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 382 RPHL00000000.1 Bac0019894 Sinorhizobium meliloti strain USDA1025 "Sinorhizobium meliloti strain USDA1025 is a Gram-negative, rod-shaped bacterium with an optimal growth temperature of 25°C. This strain is classified as an aerobic organism, indicating that it requires oxygen for its metabolic processes. S. meliloti, as a species, is known to inhabit various environments, suggesting its adaptability to multiple habitats.↵↵This strain is particularly notable for its role in symbiotic nitrogen fixation, primarily in association with legumes, such as alfalfa. The ability to form root nodules in these plants not only facilitates nitrogen acquisition for the host but also contributes to soil fertility, making S. meliloti an essential player in agricultural systems. The ecological significance of USDA1025 is underscored by its potential use in sustainable farming practices, enhancing crop yields while reducing reliance on chemical fertilizers.↵↵Given its optimal growth conditions and aerobic nature, S. meliloti strain USDA1025 may thrive in temperate climates where its symbiotic relationships can be fully realized. This strain exemplifies the intricate interactions between soil bacteria and plant life, highlighting the importance of microbial diversity in maintaining ecosystem health and agricultural productivity." Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium meliloti Negative Rod Yes Aerobe 25 Mesophilic Multiple 382 RPNL00000000.1 Bac0019895 Buttiauxella warmboldiae strain CCUG 35512 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella warmboldiae aerobic 82993 RPOH00000000.1 Bac0019896 Alteromonas sediminis strain U0105 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas sediminis 2259342 RPOK00000000.1 Bac0019897 Myxococcaceae bacterium Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcaceae bacterium 2484252 RPRB00000000.1 Bac0019898 Streptomyces sp. WAC05858 AA000102-881_WAC05858 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC05858 2487409 RPRR00000000.1 Bac0019899 Streptomyces sp. WAC07061 AA000109-1114_WAC07061 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC07061 2487410 RPRS00000000.1 Bac0019900 Streptomyces sp. WAC00469 AA000134-292_WAC00469 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC00469 2487415 RPRX00000000.1 Bac0019901 Streptomyces sp. WAC01280 AA000273-26_WAC01280 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC01280 2487424 RPSA00000000.1 Bac0019902 Streptomyces sp. WAC02707 AA000295-745_WAC02707 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC02707 2487417 RPSB00000000.1 Bac0019903 Rhizobium sophoriradicis strain CCBAU 03470 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sophoriradicis 1535245 RQIH00000000.1 Bac0019904 Morganella morganii strain CQ-M7 "Morganella morganii strain CQ-M7 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is primarily isolated from natural environments, including sewage, suggesting its adaptability to diverse ecological niches. As a member of the Enterobacteriaceae family, M. morganii is known to thrive in environments rich in organic matter, where it likely plays a role in nutrient cycling and organic matter decomposition.↵↵The facultative anaerobic nature of M. morganii strain CQ-M7 indicates its ability to survive in both aerobic and anaerobic conditions, which may contribute to its persistence in various habitats, particularly those with fluctuating oxygen levels. This metabolic versatility allows the bacterium to exploit different substrates available in its environment, facilitating its growth and survival in complex microbial communities.↵↵Understanding the ecological role of Morganella morganii strain CQ-M7 in sewage environments can provide insights into its potential contributions to bioremediation processes. The bacterium’s capacity to thrive in nutrient-rich, anaerobic conditions may suggest its involvement in the degradation of pollutants and organic waste, highlighting its utility in wastewater treatment systems. Thus, M. morganii strain CQ-M7 exemplifies the importance of microbial diversity in maintaining ecosystem health and functionality." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Rod Facultative anaerobe mesophilic natural environment; sewage 582 RQIJ00000000.1 Bac0019905 Paraburkholderia dinghuensis strain DHOA04 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia dinghuensis 2305225 RQIS00000000.1 Bac0019906 Bradyrhizobium sp. RP6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. RP6 2489596 RQIT00000000.1 Bac0019907 Paraburkholderia tropica strain BE15 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia tropica 92647 RQIZ00000000.1 Bac0019908 Streptomyces sp. WAC05950 AA000327-810_WAC05950 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC05950 2487419 RQJB00000000.1 Bac0019909 Streptomyces sp. WAC07149 AA000360-118_WAC07149 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC07149 2487425 RQJC00000000.1 Bac0019910 Arenibacter aquaticus strain GUO Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Arenibacter Arenibacter aquaticus 2489054 RQPJ00000000.1 Bac0019911 Actinobaculum sp. 352 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum sp. 352 2490946 RQSN00000000.1 Bac0019912 Rhodobacteraceae bacterium CH30 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium CH30 2490538 RQSQ00000000.1 Bac0019913 Paenimyroides viscosum strain YIM 102796 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Paenimyroides Paenimyroides viscosum 2488729 RQTJ00000000.1 Bac0019914 Escherichia coli strain GBGD28 "Escherichia coli strain GBGD28 is a Gram-negative, rod-shaped bacterium that typically exists in singles or pairs. This strain thrives optimally at 37.0°C, a temperature that coincides with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain GBGD28 can grow in both aerobic and anaerobic environments, allowing it to inhabit diverse niches within its host's gastrointestinal tract.↵↵The ability to thrive in varying oxygen conditions is a notable characteristic that contributes to its metabolic versatility, potentially influencing its interactions within the host microbiome. The organism's rod shape and cell arrangement may also play a role in its ecological adaptation, facilitating colonization and biofilm formation, which are critical for its survival and function in host-associated environments.↵↵Overall, the traits of Escherichia coli strain GBGD28 suggest a well-adapted bacterium capable of exploiting the nutrient-rich conditions of its host, potentially influencing host health and microbial community dynamics. Further studies could elucidate its specific roles within the complex ecosystems of the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RQTU00000000.1 Bac0019915 Flavobacterium macacae strain YIM 102600 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium macacae 2488993 RQVR00000000.1 Bac0019916 Amphritea opalescens strain ANRC-JH13 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Amphritea Amphritea opalescens 2490544 RQXW00000000.1 Bac0019917 Mesobaculum littorinae strain M0103 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Mesobaculum Mesobaculum littorinae 2486419 RQXX00000000.1 Bac0019918 Clostridiales bacterium COT073_COT-073 Bacillati Bacillota Clostridia Eubacteriales Clostridiales bacterium COT073_COT-073 2491044 RQYD00000000.1 Bac0019919 Desulfovibrio sp. OH1186_COT-070 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. OH1186_COT-070 2491045 RQYH00000000.1 Bac0019920 Alloprevotella sp. OH1205_COT-284 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Alloprevotella Alloprevotella sp. OH1205_COT-284 2491043 RQYI00000000.1 Bac0019921 Fretibacterium sp. OH1220_COT-178 Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp. OH1220_COT-178 2491047 RQYL00000000.1 Bac0019922 Leucobacter sp. OH1287 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter sp. OH1287 2491049 RQYM00000000.1 Bac0019923 Tannerella forsythia strain OH1426_COT-023 "Tannerella forsythia strain OH1426_COT-023 is a Gram-negative, anaerobic bacterium predominantly found in the gingival sulci and within dental biofilms, specifically in subgingival and supragingival plaque. This species is recognized for its role in the complex microbial communities associated with the oral cavity, particularly in areas conducive to anaerobic conditions, where it thrives alongside other microbial inhabitants. ↵↵The anaerobic nature of Tannerella forsythia suggests a specialized adaptation to low-oxygen environments, which are typical of subgingival spaces where plaque accumulation occurs. The presence of T. forsythia in these specific habitats indicates its potential involvement in the dynamics of oral microbiomes, particularly in relation to periodontal health and disease. ↵↵Research indicates that members of the Tannerella genus can exhibit synergistic relationships with other oral bacteria, contributing to the structural integrity and metabolic functions of dental biofilms. Understanding the ecological role of Tannerella forsythia strain OH1426_COT-023 may provide insights into the complex interactions that govern microbial communities in the oral environment, highlighting its potential influence on oral health and disease progression. The study of this strain could, therefore, enhance our comprehension of microbial ecology within the human dental niche." Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Tannerella Tannerella forsythia Negative Anaerobe gingival sulci; subgingival and supragingival dental biofilms; subgingival plaque 28112 RQYN00000000.1 Bac0019924 Campylobacter rectus strain OH2158 "Campylobacter rectus strain OH2158 is a Gram-negative, microaerophilic bacterium primarily found in the oral cavity, specifically within peri-implant sulci. This strain, like other members of the Campylobacter genus, exhibits a characteristic helical shape and is known to thrive in environments with reduced oxygen levels, which is consistent with its microaerophilic requirement. The presence of C. rectus in the oral cavity suggests a potential role in the microbial community associated with dental implants, where it may influence the local microbial ecology and health of peri-implant tissues.↵↵The microaerophilic nature of Campylobacter rectus strain OH2158 implies that it may be adapted to environments where oxygen is limited, which is typical of certain niches in the oral microbiome. Understanding the specific habitat of this strain within peri-implant sulci could provide insights into its interactions with other microbial species and its potential contributions to oral health or disease. Furthermore, the presence of C. rectus in these specialized niches may reflect its adaptability to varying oxygen tensions and its role in maintaining the balance of oral microbiota, particularly in relation to dental implants. This adaptability highlights the complexity of oral microbial ecosystems and the importance of studying specific strains to elucidate their ecological roles and interactions." Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus negative microaerophilic oral cavity; peri-implant sulci 203 RQYP00000000.1 Bac0019925 Comamonadaceae bacterium OH2310_COT-174 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonadaceae bacterium OH2310_COT-174 2491056 RQYQ00000000.1 Bac0019926 Fusobacterium canifelinum strain OH4460_COT-188 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium canifelinum anaerobic 285729 RQYY00000000.1 Bac0019927 Tessaracoccus sp. OH4464_COT-324 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus sp. OH4464_COT-324 2491059 RQYZ00000000.1 Bac0019928 Actinomyces bowdenii strain OH5050 "Actinomyces bowdenii strain OH5050 is a Gram-positive, rod-shaped bacterium characterized by its microaerophilic oxygen requirement. As a member of the Actinomyces genus, this strain exhibits typical features associated with its taxonomic group, including filamentous growth patterns under certain conditions. The microaerophilic nature of A. bowdenii strain OH5050 suggests that it thrives in environments with low oxygen concentrations, which may influence its ecological niche and interactions with other microorganisms.↵↵This strain may be found in various habitats, particularly in oral and gastrointestinal environments, where it could play a role in the microbial community dynamics. The Gram-positive cell wall structure of A. bowdenii strain OH5050 is indicative of its potential resilience in competitive microbial environments, as this characteristic often confers advantages in terms of survival and colonization. ↵↵Moreover, the filamentous growth form of Actinomyces species, including A. bowdenii, can facilitate the formation of complex biofilms, which are critical for maintaining microbial communities and influencing nutrient cycling within their ecosystems. Understanding the specific ecological roles of A. bowdenii strain OH5050 may provide insights into its contributions to microbial diversity and function in microaerophilic environments." Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces bowdenii Gram-positive rod non-motile microaerophile 131109 RQZC00000000.1 Bac0019929 Fusobacterium nucleatum strain OH5060 "Fusobacterium nucleatum strain OH5060 is a nonsporulating, Gram-negative rod that thrives in anaerobic environments, with an optimal growth temperature of 37.0°C. This strain, like others in the F. nucleatum species, is associated with host environments, suggesting its role in the complex microbiota of various organisms. The anaerobic nature of this bacterium indicates that it is adapted to environments devoid of oxygen, which is characteristic of many members of the Fusobacterium genus that are often found in the human oral cavity and gastrointestinal tract. ↵↵The ability of F. nucleatum to survive and proliferate in these specific conditions highlights its potential interactions within the host microbiome, including its involvement in metabolic processes and its possible contributions to microbial community dynamics. Understanding the ecological role of strain OH5060 within host-associated environments can provide insights into the broader implications of Fusobacterium species in health and disease, particularly in relation to their metabolic functions and interactions with other microbial inhabitants." Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Rod No 1 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating Animal 851 RQZD00000000.1 Bac0019930 Methanohalophilus sp. WG1-DM Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanohalophilus Methanohalophilus sp. WG1-DM 2491675 RRBA00000000.1 Bac0019931 Halocatena pleomorpha strain SPP-AMP-1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halocatena Halocatena pleomorpha 1785090 RRCH00000000.1 Bac0019932 Halomonas sp. YLB-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas sp. YLB-10 2483111 RRCU00000000.1 Bac0019933 Escherichia coli strain FWSEC0022 "Escherichia coli strain FWSEC0022 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which is consistent with the physiological temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0022 can grow in both aerobic and anaerobic environments, allowing it to efficiently utilize various metabolic pathways depending on the availability of oxygen.↵↵The ability of this strain to inhabit host organisms implies its potential involvement in complex host-microbe interactions. Given its facultative anaerobic nature and optimal growth temperature, E. coli FWSEC0022 may play a role in gastrointestinal environments where oxygen levels fluctuate and temperature is maintained within a narrow range. This adaptability could provide insights into its ecological function, such as nutrient recycling or contribution to the microbial community dynamics within the host. Further investigation into this strain's specific interactions and metabolic contributions within its habitat could elucidate its ecological significance and potential roles in host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRCW00000000.1 Bac0019934 Escherichia coli strain FWSEC0024 "Escherichia coli strain FWSEC0024 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to survive and grow in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 37.0°C, which aligns with the physiological conditions found in the intestinal tracts of warm-blooded hosts, highlighting its host-associated habitat preference.↵↵The rod shape and arrangement in pairs or singles suggest a level of adaptability that may facilitate its colonization and survival in diverse environments within the host. The facultative anaerobic nature of FWSEC0024 allows it to thrive in various niches, whether in the presence or absence of oxygen, potentially contributing to its versatility in metabolic pathways.↵↵Understanding the characteristics of E. coli strain FWSEC0024 can enhance insights into the ecological dynamics of gut microbiota, as its presence could influence the balance of microbial communities in host-associated environments. The strain's adaptability to different oxygen levels and its optimal growth temperature suggest it plays a role in the complex interactions that occur within the host microbiome, possibly affecting nutrient utilization and microbial competition. Further studies are warranted to elucidate the specific functions and interactions of FWSEC0024 in its native habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRCY00000000.1 Bac0019935 Escherichia coli strain FWSEC0026 "Escherichia coli strain FWSEC0026 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of its common host environments. As a facultative anaerobe, FWSEC0026 can utilize oxygen for respiration but also possesses the capability to survive in anaerobic conditions, providing it with a versatile metabolic profile suitable for various host-associated habitats.↵↵E. coli strains, including FWSEC0026, are often found in the intestines of warm-blooded organisms, where they play a role in the digestive process and the maintenance of gut microbiota. The ability to adapt to both aerobic and anaerobic environments may facilitate its survival across different host conditions, contributing to its prevalence in the gastrointestinal tract.↵↵Understanding the specific traits of FWSEC0026 can provide insights into its ecological role and potential interactions within the microbial communities of its host. The strain’s adaptability to varying oxygen levels suggests a potential resilience in fluctuating host environments, which could influence its interactions with other microbial species and the overall health of the host. Further investigation into this strain may elucidate its functional contributions to gut health and its role in microbial dynamics within its ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDA00000000.1 Bac0019936 Escherichia coli strain FWSEC0030 "Escherichia coli strain FWSEC0030 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the physiological conditions found in the intestinal tracts of warm-blooded hosts, where it is primarily associated. E. coli FWSEC0030 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. ↵↵As a host-associated microbe, E. coli strain FWSEC0030 may play a significant role in the microbial ecosystem of its host, potentially contributing to processes such as digestion and nutrient absorption. The ability of this strain to adapt to varying oxygen levels suggests a versatile metabolic capacity, allowing it to occupy diverse niches within the host environment. This adaptability not only underscores its ecological importance but may also provide insights into the broader interactions between host-associated microbiomes and their respective hosts, particularly in how these bacteria can influence host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDE00000000.1 Bac0019937 Escherichia coli strain FWSEC0035 "Escherichia coli strain FWSEC0035 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimally, E. coli FWSEC0035 grows at a temperature of 37.0°C, aligning with the physiological temperature of warm-blooded hosts, highlighting its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli strains exhibit notable versatility in their metabolic capabilities, which can facilitate survival in diverse environments, particularly within the gastrointestinal tracts of various host organisms. The ability to grow in pairs or singly may suggest potential for both cooperative behavior and competition among individual cells, which could influence its ecological interactions within host-associated communities.↵↵Understanding the characteristics of E. coli strain FWSEC0035, particularly its oxygen requirements and optimal growth conditions, provides valuable insight into its potential roles in microbial ecosystems. The strain's facultative anaerobic nature indicates that it may play a role in nutrient cycling and influencing the composition of microbial communities in host environments, adapting to varying oxygen availabilities encountered in such habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDJ00000000.1 Bac0019938 Escherichia coli strain FWSEC0039 "Escherichia coli strain FWSEC0039 is a Gram-negative, rod-shaped bacterium that predominantly exists in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is 37.0°C, which aligns with the typical human body temperature, suggesting a close association with host organisms.↵↵E. coli strains are known for their versatility and ability to inhabit diverse environments, but FWSEC0039 is specifically noted for its host-associated habitat. This characteristic indicates that the strain may play a role in the microbial community of its host, potentially contributing to various physiological processes, including digestion and nutrient absorption. ↵↵The facultative anaerobic nature of FWSEC0039 further suggests that it can adapt to fluctuating oxygen levels within its environment, which is crucial for survival in the dynamic conditions found in host-associated habitats. This adaptability may also allow the strain to compete effectively with other microbial species present in the host's microbiota.↵↵In summary, Escherichia coli strain FWSEC0039 exemplifies characteristics that underscore its capacity to function as a versatile member of the host-associated microbial community, potentially influencing host health and metabolism through its adaptive metabolic strategies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDL00000000.1 Bac0019939 Escherichia coli strain FWSEC0040 "Escherichia coli strain FWSEC0040 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in the intestines of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0040 possesses the ability to grow in both the presence and absence of oxygen, allowing it to occupy various niches within its host environment where oxygen levels may fluctuate.↵↵The adaptation of FWSEC0040 to host-associated habitats suggests that it may play a role in the complex microbial ecosystems of the gastrointestinal tract. Its facultative anaerobic nature further implies a potential versatility in utilizing diverse metabolic pathways, which can be advantageous in competing with other microorganisms for resources. Understanding the specific interactions and functions of FWSEC0040 within its ecological niche may provide insights into the microbial dynamics that contribute to gut health and host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDM00000000.1 Bac0019940 Escherichia coli strain FWSEC0043 "Escherichia coli strain FWSEC0043 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli FWSEC0043 exhibits optimal growth at 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵The strain’s Gram-negative status suggests a complex cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can influence its interactions with host organisms. Its rod shape and specific cell arrangement may also play a role in its motility and colonization abilities within a host environment. ↵↵Given that E. coli strains are commonly found in the intestines of humans and other animals, strain FWSEC0043 likely contributes to the dynamic microbiome associated with its host, potentially playing a role in nutrient absorption or gut health. Furthermore, the strain's facultative anaerobic nature allows for metabolic flexibility in varying oxygen conditions, which may enhance its survival and functional contributions within diverse host-associated ecosystems. This adaptability underscores the importance of E. coli in the overall balance of microbial communities in gastrointestinal environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDP00000000.1 Bac0019941 Escherichia coli strain FWSEC0044 "Escherichia coli strain FWSEC0044 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37°C, which is consistent with its adaptation to host-associated environments. E. coli strains are known for their metabolic versatility, and FWSEC0044 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions.↵↵The host-associated habitat of this strain suggests an ecological role in symbiotic relationships, potentially contributing to the microbiota of its host. Such interactions may influence nutrient absorption and play a role in maintaining gut health. The ability of strain FWSEC0044 to survive in variable oxygen conditions further indicates its adaptability, allowing it to colonize diverse niches within the host environment.↵↵The traits of E. coli strain FWSEC0044 highlight its potential significance in microbiological studies, particularly in understanding host-microbe interactions and the metabolic pathways that facilitate survival in dynamic environments. This adaptability may serve as a critical factor in its ecological success within the gastrointestinal tract of various hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDQ00000000.1 Bac0019942 Escherichia coli strain FWSEC0046 "Escherichia coli strain FWSEC0046 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which coincides with the physiological temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0046 can survive in both aerobic and anaerobic environments, showcasing its metabolic versatility and ability to occupy diverse ecological niches within host organisms.↵↵The characteristics of E. coli FWSEC0046 suggest its potential roles in the microbiota of various hosts, where it may contribute to nutrient absorption and gut health. The ability to thrive in the presence or absence of oxygen allows this strain to persist in varying conditions within the gastrointestinal tract, highlighting its adaptability. This adaptability may facilitate interactions with other microbial species and the host's immune system, contributing to the dynamic balance of the gut microbiome. Understanding the specific traits of E. coli FWSEC0046 could provide insights into its ecological functions and potential applications in microbiological research or biotechnology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDS00000000.1 Bac0019943 Escherichia coli strain FWSEC0047 "Escherichia coli strain FWSEC0047 is a Gram-negative, rod-shaped bacterium that exhibits a unique arrangement of cells, primarily found in pairs and singles. This strain thrives optimally at 37.0°C, which aligns with the typical body temperature of many warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0047 is capable of surviving in both aerobic and anaerobic environments, allowing for versatility in its metabolic processes depending on the availability of oxygen.↵↵The association of E. coli strains with host organisms is well-documented, and FWSEC0047 likely plays a role in the complex microbial communities found within the gastrointestinal tracts of its hosts. This adaptability to varying oxygen levels, coupled with its optimal growth temperature, suggests that FWSEC0047 may contribute to essential physiological processes such as digestion or nutrient absorption in its host. Furthermore, the ability of this strain to exist in both single and paired arrangements may provide advantages in terms of stability and communication within biofilms or microbial consortia, enhancing its ecological niche. Understanding the specific roles of E. coli strain FWSEC0047 in host-associated environments could offer insights into microbial dynamics and host interactions in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDT00000000.1 Bac0019944 Escherichia coli strain FWSEC0050 "Escherichia coli strain FWSEC0050 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 37.0°C, which aligns with the physiological temperature of the mammalian host, suggesting that this strain is well-adapted to life within host-associated habitats.↵↵The presence of E. coli strain FWSEC0050 in host-associated environments underscores its potential role in the complex microbiota of the gastrointestinal tract of warm-blooded animals, where it may contribute to various metabolic processes. Given its facultative anaerobic nature, this strain can utilize different metabolic pathways depending on the oxygen availability in the host's gut, allowing it to adapt to fluctuating conditions within the intestinal lumen.↵↵Furthermore, the arrangement of cells in pairs or singles may influence its interactions with the host's immune system and other microbial inhabitants. These traits collectively indicate that E. coli strain FWSEC0050 may play a significant role in maintaining gut homeostasis, as well as in nutrient cycling within the host's microbiome. Understanding the specific ecological functions of this strain could provide insights into its contributions to host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDW00000000.1 Bac0019945 Escherichia coli strain FWSEC0051 "Escherichia coli strain FWSEC0051 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which is characteristic of many members of the Enterobacteriaceae family. Optimal growth occurs at 37.0°C, a temperature that corresponds with the conditions found in the intestinal tracts of warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵The facultative anaerobic nature of E. coli FWSEC0051 suggests that it can utilize various metabolic pathways depending on the availability of oxygen, which may enhance its survival and proliferation in diverse microenvironments within the host. This adaptability is critical for its role in the gut microbiome, where it can contribute to nutrient metabolism and maintain microbial homeostasis.↵↵Understanding the specific growth conditions and ecological niches of E. coli strain FWSEC0051 can provide insights into its potential interactions with other gut microbiota and its contributions to host health. Further research on this strain may elucidate its functional roles in the gut ecosystem and its responses to varying environmental pressures, which could have broader implications for microbiome studies and microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDX00000000.1 Bac0019946 Escherichia coli strain FWSEC0052 "Escherichia coli strain FWSEC0052 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, adapting its metabolic processes accordingly. E. coli FWSEC0052 thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat.↵↵As a member of the Enterobacteriaceae family, E. coli is commonly found in the intestines of humans and other animals, where it plays a role in digestion and nutrient absorption. The facultative anaerobic nature of this strain allows it to survive in various environments within the host, including both oxygen-rich and oxygen-poor niches. ↵↵Understanding the specific traits of E. coli strain FWSEC0052 enhances our knowledge of microbial adaptability and survival strategies in host-associated environments. This strain exemplifies how certain microorganisms can effectively exploit the metabolic versatility required for colonization and persistence within the complex ecosystems of their hosts, potentially influencing host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRDY00000000.1 Bac0019947 Escherichia coli strain FWSEC0055 "Escherichia coli strain FWSEC0055 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which is consistent with its association with host environments, where it may play roles in various biological processes. As a facultative anaerobe, FWSEC0055 has the capability to survive in both aerobic and anaerobic conditions, allowing it to adapt to diverse microenvironments within its host.↵↵The ability of E. coli strain FWSEC0055 to occupy host-associated habitats suggests it may engage in symbiotic relationships, potentially contributing to the digestive processes of its host or influencing the host's microbiome composition. Understanding the specific interactions and ecological roles of FWSEC0055 within its host environment may provide insights into its potential contributions to host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RREB00000000.1 Bac0019948 Escherichia coli strain FWSEC0057 "Escherichia coli strain FWSEC0057 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which is consistent with the body temperature of its host-associated habitat. As a facultative anaerobe, E. coli FWSEC0057 can adapt to varying oxygen levels, allowing it to survive in diverse environments within the host, where oxygen availability may fluctuate.↵↵The strain's ability to thrive in host-associated environments suggests a potential role in the microbiota of its host, where it may contribute to various metabolic processes or aid in nutrient absorption. Understanding the specific ecological interactions of E. coli FWSEC0057 within its host could provide insights into its functional significance in the microbial community, as well as its potential impact on host health. Further research may elucidate the specific contributions of this strain to the host's physiology, particularly in terms of its adaptability to differing oxygen levels and its interactions with other microbial species in the host environment." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RREC00000000.1 Bac0019949 Escherichia coli strain FWSEC0080 "Escherichia coli strain FWSEC0080 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0080 possesses the metabolic flexibility to survive in both aerobic and anaerobic environments, allowing it to exploit a range of ecological niches within its host. ↵↵The characteristics of FWSEC0080 suggest it plays a role in the complex microbial communities found in the gastrointestinal tracts of animals, where it may contribute to various metabolic processes. Its ability to grow in diverse oxygen conditions enables it to effectively colonize and persist within the variable oxygen levels present in different regions of the gut. This adaptability may facilitate its involvement in nutrient cycling and the maintenance of gut homeostasis. Understanding the specific interactions and functions of FWSEC0080 in its host may provide further insights into the dynamics of gut microbiota and their influence on host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RREZ00000000.1 Bac0019950 Escherichia coli strain FWSEC0086 "Escherichia coli strain FWSEC0086 is a Gram-negative, rod-shaped bacterium that typically exhibits a cellular arrangement in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of its host environments. As a facultative anaerobe, FWSEC0086 can grow in both the presence and absence of oxygen, providing it with metabolic flexibility that is advantageous in diverse ecological niches.↵↵This strain is characterized as host-associated, suggesting a potential symbiotic relationship with its host organism, which may contribute to its survival and proliferation. The ability to adapt to varying oxygen levels allows FWSEC0086 to occupy various microenvironments within the host, possibly influencing its interactions with the host's microbiota or immune system.↵↵The specific ecological role of Escherichia coli strain FWSEC0086 remains to be fully elucidated, but its growth characteristics and habitat association indicate that it may play a significant role in the microbial dynamics within host-associated environments. Understanding its metabolic capabilities and habitat preferences could provide insights into its potential contributions to host health or disease, as well as its ecological significance in maintaining microbial community balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRFF00000000.1 Bac0019951 Escherichia coli strain FWSEC0087 "Escherichia coli strain FWSEC0087 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. E. coli FWSEC0087 has an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of its host-associated habitat, suggesting a close relationship with warm-blooded organisms.↵↵The facultative anaerobic nature of FWSEC0087 indicates its adaptability to varying oxygen levels, which is a characteristic trait of many E. coli strains that inhabit the intestines of mammals. This adaptability may provide insights into the strain's metabolic versatility and its potential role in nutrient cycling within its ecological niche. The presence of this strain in host-associated environments underscores the importance of E. coli in microbial communities, where it may contribute to the digestion of complex carbohydrates and the synthesis of essential vitamins.↵↵Overall, the traits of Escherichia coli strain FWSEC0087 highlight its adaptability and functional significance in host-associated ecosystems, potentially influencing host health and microbial dynamics within the gut microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRFG00000000.1 Bac0019952 Escherichia coli strain FWSEC0089 "Escherichia coli strain FWSEC0089 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, aligning with the body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli FWSEC0089 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which may provide it with a competitive advantage in diverse microenvironments within the host.↵↵The traits of this strain highlight its potential versatility and resilience in various host-associated conditions, where it can utilize available nutrients effectively. Understanding the specific traits of E. coli FWSEC0089 contributes to a broader comprehension of its ecological roles within the microbiome, particularly in host environments. This adaptability to varying oxygen levels may facilitate its survival and proliferation in different niches within the host, potentially influencing metabolic interactions and the overall microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRFI00000000.1 Bac0019953 Escherichia coli strain FWSEC0093 "Escherichia coli strain FWSEC0093 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a characteristic feature of many E. coli strains. The optimal growth temperature for FWSEC0093 is approximately 37.0°C, aligning with the physiological temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. ↵↵E. coli is commonly found as part of the normal microbiota in the intestines of humans and other animals, where it plays a crucial role in digestion and nutrient absorption. The host-associated nature of strain FWSEC0093 implies that it may have specific adaptations that facilitate its survival and growth in association with a host organism. The ability to grow in varying oxygen conditions may provide a competitive advantage in diverse environments within the host, including oxygen-rich intestinal regions and more anaerobic areas.↵↵Understanding the traits of E. coli strain FWSEC0093 contributes to our knowledge of its ecological role within host organisms, particularly in maintaining gut health and potentially influencing microbial community dynamics. Further investigation into its metabolic pathways and interactions with other microbial species could illuminate its function in the host-associated microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRFL00000000.1 Bac0019954 Escherichia coli strain FWSEC0094 "Escherichia coli strain FWSEC0094 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0094 possesses the metabolic versatility to grow in both aerobic and anaerobic conditions, enabling it to colonize various niches within the host environment.↵↵The presence of E. coli in host-associated habitats suggests its potential role in the microbiota, where it may contribute to nutrient acquisition and maintenance of gut health. The adaptability of FWSEC0094 to fluctuating oxygen levels may also allow it to occupy diverse ecological niches within the gut, thereby facilitating interactions with other microbial communities. Such interactions could be crucial for understanding the dynamics of microbial populations and their collective impact on host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRFM00000000.1 Bac0019955 Escherichia coli strain FWSEC0097 "Escherichia coli strain FWSEC0097 is a Gram-negative, rod-shaped bacterium typically found in a host-associated habitat. This strain exhibits a cell arrangement characterized by pairs and singles, which is consistent with the morphological characteristics of many E. coli strains. FWSEC0097 thrives optimally at a temperature of 37.0°C, aligning with the physiological preferences of many enteric bacteria that inhabit warm-blooded hosts.↵↵As a facultative anaerobe, E. coli strain FWSEC0097 can adapt to varying oxygen levels, allowing it to survive and flourish in diverse environments, including both aerobic and anaerobic conditions within the host's microbiome. This metabolic versatility is significant, as it enables the strain to capitalize on available nutrients and ecological niches, potentially playing a role in the balance of microbial communities within its host.↵↵Given its host-associated habitat and the physiological traits it exhibits, E. coli strain FWSEC0097 may contribute to the complex interactions within the host's gut microbiota, influencing nutrient absorption and overall gut health. Understanding its specific role in these interactions could provide insights into the microbial ecology of the gut and the broader implications for the host's health and disease states." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRFP00000000.1 Bac0019956 Escherichia coli strain FWSEC0105 "Escherichia coli strain FWSEC0105 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both the presence and absence of oxygen. Escherichia coli FWSEC0105 is optimally active at 37.0 degrees Celsius, which aligns with the typical mammalian host body temperature, suggesting its adaptation to a host-associated habitat.↵↵The presence of this strain in a host-associated environment highlights its potential role in the complex microbial communities found within various biological systems. The ability of E. coli FWSEC0105 to grow in pairs and as single cells may suggest a level of adaptability that could facilitate its survival and functionality in fluctuating conditions within the host. This adaptive morphology, combined with its facultative anaerobic metabolism, positions E. coli FWSEC0105 as a versatile microbe capable of exploiting diverse niches within the host environment. Understanding these traits may provide insights into the ecological dynamics of E. coli strains in relation to their hosts, especially concerning their interactions with other microbial species and their roles in metabolic processes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRFW00000000.1 Bac0019957 Escherichia coli strain FWSEC0113 "Escherichia coli strain FWSEC0113 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is around 37.0 °C, which aligns with the average body temperature of many mammalian hosts, suggesting a close association with host organisms.↵↵As a member of the Enterobacteriaceae family, E. coli FWSEC0113 is commonly found in host-associated habitats, indicating potential interactions with host microbiota or the gastrointestinal tract. The ability to adapt to varying oxygen levels may confer an ecological advantage, enabling this strain to colonize diverse niches within its host environment, where oxygen availability can fluctuate.↵↵The specific growth characteristics and adaptability of E. coli strain FWSEC0113 highlight its potential role in microbial communities associated with warm-blooded hosts. Understanding its physiological traits could provide insights into its interactions within the host microbiome and its contributions to metabolic processes, nutrient cycling, or other symbiotic relationships. Further studies may elucidate the functional roles of this strain within its ecological niche, enhancing our comprehension of microbial dynamics in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGE00000000.1 Bac0019958 Escherichia coli strain FWSEC0116 "Escherichia coli strain FWSEC0116 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of its host organisms, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0116 is capable of surviving in both aerobic and anaerobic environments, enhancing its versatility in different ecological niches within the host. ↵↵The host-associated lifestyle of this strain suggests potential roles in the microbiota of mammals, where it may contribute to various physiological processes. The ability to exist in pairs or as singles could facilitate interactions with other microbial species or host cells, potentially influencing microbial community dynamics and host health. Understanding the specific ecological roles of E. coli strain FWSEC0116 within its host environment may provide insights into the broader implications of microbiome interactions and host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGH00000000.1 Bac0019959 Escherichia coli strain FWSEC0117 "Escherichia coli strain FWSEC0117 is a Gram-negative, rod-shaped bacterium that exhibits a distinctive arrangement of cells, primarily found in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that corresponds to the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli FWSEC0117 is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic environments, which is a characteristic feature of many enteric bacteria that colonize the digestive tracts of various organisms.↵↵As a member of the Enterobacteriaceae family, E. coli is widely recognized for its versatile metabolic capabilities, which enable it to utilize a variety of substrates for growth. The facultative anaerobic nature of this strain suggests that it can effectively adapt to fluctuating oxygen levels within its host environment, making it well-suited for life in the gastrointestinal tract. ↵↵The ecological role of E. coli FWSEC0117 within its host may extend beyond mere commensalism; it could potentially participate in nutrient cycling or influence the host's gut microbiome dynamics. Understanding the traits of this strain can provide insights into its functional contributions to gut health and the complex interactions it may have with both the host and other microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGI00000000.1 Bac0019960 Escherichia coli strain FWSEC0121 "Escherichia coli strain FWSEC0121 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli FWSEC0121 is capable of survival in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels within its host.↵↵The host-associated nature of E. coli FWSEC0121 suggests a potential symbiotic role within the gastrointestinal tract of animals, where it may contribute to nutrient absorption and gut health. The ability to exist in diverse oxygen conditions further enhances its adaptability to the dynamic environments encountered within host organisms.↵↵Understanding the characteristics of E. coli strain FWSEC0121 can provide insights into its ecological role in host-associated environments, particularly in relation to metabolic processes and interactions with the host microbiome. Further studies could elucidate its functions and contributions to host physiology, highlighting the intricate relationships between bacteria and their hosts in maintaining health and homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGM00000000.1 Bac0019961 Escherichia coli strain FWSEC0124 "Escherichia coli strain FWSEC0124 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, a condition that aligns with the physiological temperatures of many mammalian hosts. E. coli FWSEC0124 is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments, which is a trait that enhances its adaptability to various host-associated habitats.↵↵The habitat of E. coli FWSEC0124 is primarily host-associated, suggesting a close ecological relationship with its host organisms, which are often mammals, including humans. The ability to thrive in diverse oxygen conditions allows this strain to occupy various niches within the host, such as the gastrointestinal tract, where it can utilize the available nutrients and contribute to the gut microbiome's overall function.↵↵This strain's adaptability to varying oxygen levels and its optimal growth temperature suggest potential roles in nutrient cycling and metabolic interactions within host environments. Understanding these traits of E. coli FWSEC0124 can provide insights into its ecological functions and interactions with the host microbiome, as well as its contributions to the overall health and metabolism of the host organism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGP00000000.1 Bac0019962 Escherichia coli strain FWSEC0125 "Escherichia coli strain FWSEC0125 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, able to thrive in both aerobic and anaerobic environments, which underscores its metabolic versatility. The optimal growth temperature for FWSEC0125 is 37.0°C, aligning with the typical temperature of the mammalian host, suggesting an adaptation to life within host-associated habitats.↵↵As a member of the broader Escherichia coli species, FWSEC0125 is likely to play a role in the complex microbial communities found within the gastrointestinal tracts of its hosts. The ability to grow in varying oxygen conditions may facilitate its survival and metabolic interactions with other microbial species in the gut environment. This adaptability not only allows FWSEC0125 to utilize diverse nutrient sources but also positions it as a potential contributor to the maintenance of gut homeostasis.↵↵The ecological insight regarding this strain lies in its potential interactions within the host-associated microbiome, where it may influence host digestion, nutrient absorption, and the overall health of the gastrointestinal ecosystem. Further investigation into its specific functional roles could provide valuable information on the dynamics of host-microbe interactions in health and disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGQ00000000.1 Bac0019963 Escherichia coli strain FWSEC0127 "Escherichia coli strain FWSEC0127 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells and is classified as a facultative anaerobe. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of its host-associated habitat. The ability to grow in both aerobic and anaerobic conditions allows FWSEC0127 to adapt to varying environments within the host, potentially utilizing different metabolic pathways depending on the availability of oxygen.↵↵As a member of the diverse E. coli species, FWSEC0127 may play a role in the complex microbial ecosystem of its host, contributing to essential processes such as nutrient metabolism and maintaining gut homeostasis. Such interactions highlight the potential significance of this strain in influencing host health and microbial balance in its ecological niche. Further research into this strain’s specific interactions within its host environment could provide valuable insights into its role in health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGS00000000.1 Bac0019964 Escherichia coli strain FWSEC0128 "Escherichia coli strain FWSEC0128 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a common characteristic of many E. coli strains. Optimal growth for FWSEC0128 occurs at 37.0°C, a temperature that aligns with the normal body temperature of many mammals, suggesting its adaptation to a host-associated habitat.↵↵The association of E. coli strain FWSEC0128 with host organisms implies a potential role in the gut microbiome, where it may contribute to the maintenance of intestinal health or participate in metabolic processes. Understanding the ecological niche of this strain can provide insights into its interactions within the host environment, including nutrient cycling and symbiotic relationships. As part of its ecological role, this strain may influence the composition of the microbial community, potentially impacting host metabolism and immunity. Further studies could elucidate the specific interactions and functions of E. coli strain FWSEC0128 in its host-associated habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGT00000000.1 Bac0019965 Escherichia coli strain FWSEC0132 "Escherichia coli strain FWSEC0132 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or as single cells. This strain thrives optimally at 37.0°C, which is consistent with the typical human body temperature, suggesting a potential association with warm-blooded hosts. As a facultative anaerobe, FWSEC0132 can switch between aerobic and anaerobic metabolic pathways, enabling it to adapt to various environments within its host.↵↵The habitat of FWSEC0132 is host-associated, indicating that it is likely found in the intestinal tracts of animals, where it may play a role in digestion and nutrient absorption. This close association with hosts highlights the importance of E. coli strains in gut microbiota dynamics, potentially influencing host health and microbial community structure.↵↵Given its characteristics, FWSEC0132 may contribute to the complex interactions between host physiology and microbial metabolism. The ability to survive in both aerobic and anaerobic conditions, coupled with its adaptation to a warm-blooded host environment, suggests that this strain could be involved in various metabolic processes that benefit both the microbe and its host. Further investigation into the specific functions and interactions of FWSEC0132 within the gut microbiome may provide valuable insights into its ecological role and contributions to host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGX00000000.1 Bac0019966 Escherichia coli strain FWSEC0133 "Escherichia coli strain FWSEC0133 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions found in many host organisms. As a facultative anaerobe, FWSEC0133 can grow in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels within its host-associated habitat.↵↵The versatility exhibited by E. coli strain FWSEC0133 in oxygen utilization and temperature preference suggests a robust adaptability to different biological niches. This characteristic may confer advantages in competing for resources within diverse host microbiomes. Moreover, the ability to exist in pairs or singles may facilitate interactions with host cells and other microbial communities, potentially impacting its ecological role in host-associated environments. Further studies could elucidate the specific ecological dynamics and interactions of FWSEC0133 within its native habitat, providing insights into its functional contributions to the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRGY00000000.1 Bac0019967 Escherichia coli strain FWSEC0136 "Escherichia coli strain FWSEC0136 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments, which is characteristic of many members of the Enterobacteriaceae family. E. coli FWSEC0136 is optimally active at 37.0°C, a temperature that aligns closely with the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. ↵↵The ability of this strain to survive and proliferate in various oxygen conditions suggests a versatile metabolic capability, which may contribute to its persistence within host environments. The association with host organisms highlights the potential for complex interactions, such as nutrient acquisition and microbial community dynamics. Understanding the traits of E. coli FWSEC0136 may provide insights into its role in microbiomes or its interactions with host defenses, which are crucial for understanding microbial ecology and the evolution of bacterial adaptation in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHB00000000.1 Bac0019968 Escherichia coli strain FWSEC0137 "Escherichia coli strain FWSEC0137 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is approximately 37.0°C, which aligns with the physiological temperature of many warm-blooded hosts, suggesting a strong association with host environments.↵↵E. coli is widely recognized for its versatility in various habitats, and strain FWSEC0137's classification as host-associated indicates that it likely engages in symbiotic or commensal relationships within the intestinal microbiota of its host. Such associations can play crucial roles in nutrient absorption, metabolic processes, and the maintenance of gut health. Moreover, the ability to exist in pairs or as singles may facilitate its adaptability and survival within the dynamic conditions of the host's gastrointestinal tract.↵↵Understanding the traits of E. coli strain FWSEC0137 can provide insights into its potential roles in microbial communities, particularly in relation to host-associated dynamics and interactions. This strain exemplifies the adaptability and ecological significance of E. coli as a member of the gut microbiome, contributing to the overall functionality and stability of the microbial ecosystem within its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHC00000000.1 Bac0019969 Escherichia coli strain FWSEC0141 "Escherichia coli strain FWSEC0141 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as singles. This strain thrives in host-associated habitats, indicating its adaptation to life within a host environment. Optimal growth occurs at a temperature of 37.0°C, which aligns with the normal body temperature of warm-blooded animals, further emphasizing its association with host organisms. ↵↵As a facultative anaerobe, FWSEC0141 is capable of utilizing both aerobic and anaerobic metabolic pathways, enabling it to adapt to varying oxygen levels within its host environment. This metabolic flexibility may contribute to its survival and proliferation in diverse niches, including the gastrointestinal tract of mammals.↵↵Understanding the ecological role of Escherichia coli strain FWSEC0141 could provide insights into its potential interactions within the host microbiome, where it may influence nutrient absorption, vitamin synthesis, and compete with pathogenic microorganisms. Its adaptability and metabolic versatility underscore the importance of E. coli strains in maintaining microbial balance and contributing to overall host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHG00000000.1 Bac0019970 Escherichia coli strain FWSEC0143 "Escherichia coli strain FWSEC0143 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the normal human body temperature, suggesting its adaptation to a host-associated habitat. E. coli FWSEC0143 is classified as a facultative anaerobe, indicating that it can grow in both the presence and absence of oxygen, a trait that enhances its versatility in various environments within the host. ↵↵The ability of this strain to exist in diverse respiratory conditions may offer insights into its metabolic flexibility, allowing it to exploit different niches within the host's microbiome. Furthermore, its rod shape and specific cell arrangement could influence its interactions with surrounding microbial communities and host cells, potentially affecting its role in microbial ecology. Understanding the traits of E. coli FWSEC0143 contributes to our broader knowledge of the functional diversity of gut-associated microbiota and their importance in maintaining host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHI00000000.1 Bac0019971 Escherichia coli strain FWSEC0151 "Escherichia coli strain FWSEC0151 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is a characteristic feature of many members of the E. coli species. The optimal growth temperature for FWSEC0151 is 37.0 degrees Celsius, aligning with the physiological temperature of its host organisms.↵↵As a host-associated microbe, E. coli strain FWSEC0151 likely plays a role in the complex microbial ecosystems found within the gastrointestinal tracts of various hosts. The ability to adapt to different oxygen levels suggests that this strain may be well-suited to survive in diverse niches within its host environment, potentially contributing to nutrient absorption and metabolic processes. Understanding the specific interactions of FWSEC0151 within its host could provide insights into its ecological role and contributions to host health, as well as implications for microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHQ00000000.1 Bac0019972 Escherichia coli strain FWSEC0154 "Escherichia coli strain FWSEC0154 is a Gram-negative, rod-shaped bacterium characterized by its occurrence in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns well with the physiological conditions of its host-associated habitat. As a facultative anaerobe, FWSEC0154 has the ability to grow in both the presence and absence of oxygen, allowing it to adapt to varying environmental conditions within its host.↵↵The host-associated nature of E. coli strains, including FWSEC0154, suggests a complex interaction with the host's microbiome, potentially influencing nutrient absorption and immune responses. This adaptability underscores the ecological versatility of E. coli, which can inhabit diverse niches within the gastrointestinal tract and contribute to the maintenance of gut homeostasis. Understanding the specific traits of FWSEC0154 may provide insights into its role in the microbial community dynamics and its potential influence on the health of its host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHT00000000.1 Bac0019973 Escherichia coli strain FWSEC0159 "Escherichia coli strain FWSEC0159 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of warm-blooded hosts, suggesting an adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0159 is capable of growing in both aerobic and anaerobic environments, indicating a versatile metabolic capability that may enhance its survival and proliferation within various host conditions.↵↵The ability to thrive in association with hosts highlights the potential ecological role of FWSEC0159 as a microbe that may engage in symbiotic or opportunistic interactions, depending on the host's physiological state and environmental conditions. This adaptability may also contribute to its persistence in diverse habitats, whether within the gastrointestinal tract of host organisms or in other microenvironments influenced by host-associated factors. Further exploration of this strain's specific behaviors and interactions with host organisms could provide valuable insights into its biological significance and ecological dynamics within microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHY00000000.1 Bac0019974 Escherichia coli strain FWSEC0160 "Escherichia coli strain FWSEC0160 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its capability to grow in both aerobic and anaerobic environments, which is a common characteristic within the genus Escherichia. It thrives optimally at a temperature of 37.0°C, aligning with the physiological temperature of its host organisms, where it is primarily found.↵↵As a host-associated microbe, E. coli strain FWSEC0160 is likely to have interactions with the intestinal flora of its host, contributing to the complex microbial ecosystem of the gastrointestinal tract. The ability to exist in pairs or as single cells may provide this strain with advantages in colonization and nutrient uptake, as well as in evasion of host immune responses.↵↵The facultative anaerobic nature of this strain allows it to adapt to varying oxygen levels within its habitat, which is essential for survival in the fluctuating conditions often encountered in host environments. This adaptability may also play a role in its metabolic versatility, potentially influencing its interactions with the host microbiome and its overall ecological niche. Understanding the specific traits of Escherichia coli strain FWSEC0160 can provide insights into its ecological role and its contributions to the dynamics of host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRHZ00000000.1 Bac0019975 Escherichia coli strain FWSEC0235 "Escherichia coli strain FWSEC0235 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the normal body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli FWSEC0235 is classified as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen, which enhances its survival in diverse environments within the host.↵↵The presence of this strain in host-associated environments suggests its potential role in the microbiota of mammals, where it may contribute to various metabolic processes or influence host health. Given its facultative anaerobic metabolism, E. coli FWSEC0235 may play a significant part in nutrient utilization and energy production in anaerobic conditions, such as those found in the intestines of mammals. Understanding the specific ecological roles of E. coli strains like FWSEC0235 can provide insights into their contributions to host digestion and overall microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRID00000000.1 Bac0019976 Escherichia coli strain FWSEC0236 "Escherichia coli strain FWSEC0236 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, reflecting its adaptation to the warm-blooded hosts it associates with. As a facultative anaerobe, FWSEC0236 possesses the metabolic flexibility to grow in both the presence and absence of oxygen, allowing it to colonize diverse microenvironments within its host. ↵↵The host-associated habitat of Escherichia coli indicates its potential role in the gut microbiota, where it may participate in various metabolic processes and contribute to the overall health of its host. Given its ability to thrive at physiological temperature and its association with hosts, FWSEC0236 may play a significant role in nutrient cycling and the maintenance of gut homeostasis. The adaptability of this strain to varying oxygen levels suggests that it may occupy niches within the host that fluctuate in oxygen availability, further underscoring its ecological versatility. Understanding the specific interactions and functions of E. coli strain FWSEC0236 within the host environment could provide insights into its contributions to microbial ecology and host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRIE00000000.1 Bac0019977 Escherichia coli strain FWSEC0239 "Escherichia coli strain FWSEC0239 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain exhibits a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. It is optimally adapted to temperatures around 37.0°C, which is consistent with the average body temperature of warm-blooded hosts.↵↵E. coli strains, including FWSEC0239, are commonly associated with host environments, indicating a potential symbiotic relationship with their hosts. This association may play a significant role in the microbial ecology of the gastrointestinal tract, where E. coli contributes to various metabolic processes and nutrient cycling. The ability of E. coli FWSEC0239 to survive under variable oxygen conditions suggests an adaptive advantage in fluctuating environments, such as those found in host intestines where oxygen levels can vary significantly.↵↵Further research into the specific interactions of strain FWSEC0239 within its host could provide valuable insights into its role in health and disease, as well as its potential applications in biotechnology or environmental microbiology. Understanding the ecological dynamics of this strain may also shed light on its contributions to microbial community structure and function within host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRIH00000000.1 Bac0019978 Escherichia coli strain FWSEC0242 "Escherichia coli strain FWSEC0242 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0°C, aligning with the normal human body temperature, which suggests an adaptation to host-associated environments. As a facultative anaerobe, FWSEC0242 can grow in both aerobic and anaerobic conditions, allowing it to occupy diverse niches within its host. ↵↵The ability to exist in varying oxygen levels may confer a competitive advantage, enabling FWSEC0242 to colonize different tissues or environments within the host. This trait is particularly relevant given the complex microbiota interactions that occur in host-associated habitats, such as the gastrointestinal tract. Understanding the specific ecological role of FWSEC0242 within its host environment could provide insights into its interactions with other microbial species and its potential contributions to host health or disease." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRIK00000000.1 Bac0019979 Escherichia coli strain FWSEC0246 "Escherichia coli strain FWSEC0246 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the physiological conditions found within the host environment it inhabits. As a facultative anaerobe, E. coli FWSEC0246 is capable of surviving in both aerobic and anaerobic conditions, allowing it to adapt to various microenvironments within the host.↵↵The habitat of E. coli FWSEC0246 is classified as host-associated, indicating that it may play a role in the complex microbiota of its host organism. This association suggests potential interactions with the host's immune system and metabolic processes, although specific functional roles of FWSEC0246 within these contexts remain to be elucidated. ↵↵The ability of E. coli FWSEC0246 to occupy a host-associated niche while maintaining metabolic flexibility positions it as a key player in microbial dynamics, potentially influencing the health and homeostasis of its host. Understanding the specific ecological roles of this strain may provide insights into the broader implications of E. coli in host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRIO00000000.1 Bac0019980 Escherichia coli strain FWSEC0252 "Escherichia coli strain FWSEC0252 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat, as it is host-associated. As a facultative anaerobe, E. coli FWSEC0252 can adapt to both aerobic and anaerobic environments, allowing it to occupy diverse niches within its host ecosystem.↵↵The Gram-negative classification of E. coli FWSEC0252 indicates the presence of an outer membrane containing lipopolysaccharides, which can influence its interactions with the host immune system. The rod shape and specific cell arrangement may also affect its motility and colonization capabilities within host tissues.↵↵Given its optimal growth temperature of 37.0°C, E. coli FWSEC0252 is well-adapted to the warm internal environments of mammals, where it may play roles in various biological processes. The ability to thrive in both oxygen-rich and oxygen-poor conditions suggests that this strain can exploit a wide range of metabolic pathways, which may facilitate its survival and persistence in the complex microbiomes associated with host organisms.↵↵Understanding the specific traits of E. coli strain FWSEC0252 may provide insights into its ecological role within the host, particularly regarding its potential contributions to metabolic processes and interactions with other microbial inhabitants of the gut." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRIU00000000.1 Bac0019981 Escherichia coli strain FWSEC0258 "Escherichia coli strain FWSEC0258 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli FWSEC0258 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen. ↵↵The adaptability of this strain to host-associated environments may contribute to its versatile metabolic capabilities, allowing it to utilize varied nutrient sources depending on the oxygen availability. Such traits highlight the ecological role of E. coli FWSEC0258 in the microbiota of its host, where it may participate in essential biochemical processes, including fermentation and nutrient cycling. This adaptability to different oxygen conditions may also enable it to colonize various niches within the host, potentially influencing the host's overall health and microbial community dynamics. Further exploration of E. coli strain FWSEC0258's interactions within its host ecosystem could provide valuable insights into its functional roles and contributions to microbial diversity." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJA00000000.1 Bac0019982 Escherichia coli strain FWSEC0261 "Escherichia coli strain FWSEC0261 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth occurs at a temperature of 37.0 °C, which is consistent with the physiological conditions found in warm-blooded hosts.↵↵E. coli is commonly associated with the intestinal tracts of humans and other warm-blooded animals, and strain FWSEC0261 exemplifies this habitat preference as it is host-associated. The ability of this strain to adapt to varying oxygen levels may provide it with a competitive advantage in diverse environments within the host, allowing it to utilize different metabolic pathways based on the availability of oxygen.↵↵Overall, the traits of E. coli strain FWSEC0261 highlight the versatility and adaptability of this microbe within host-associated environments, which may play a critical role in its ecological interactions and potential symbiotic relationships within the gut microbiome. Further research into its specific roles and interactions could enhance our understanding of microbial community dynamics in host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJD00000000.1 Bac0019983 Escherichia coli strain FWSEC0262 "Escherichia coli strain FWSEC0262 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0262 can grow in both aerobic and anaerobic environments, allowing it to occupy diverse niches within the host's gastrointestinal tract.↵↵Being a member of the E. coli species, this strain is likely involved in various metabolic processes, contributing to the complex microbial ecosystem within the host. The ability to exist in different oxygen conditions suggests that FWSEC0262 may play a role in maintaining the balance of microbial communities, possibly influencing digestion and nutrient absorption.↵↵The ecological insights provided by the traits of E. coli strain FWSEC0262 highlight its potential role in host-microbe interactions, particularly in nutrient cycling and the modulation of gut homeostasis. Understanding the specific characteristics of this strain can provide further context for its contributions to the microbiome and its potential implications for host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJE00000000.1 Bac0019984 Escherichia coli strain FWSEC0263 "Escherichia coli strain FWSEC0263 is a Gram-negative, rod-shaped bacterium that primarily exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0263 has the capacity to grow in both aerobic and anaerobic environments, allowing it to exploit a variety of ecological niches within the host microbiota.↵↵The ability of this strain to survive and proliferate under varying oxygen conditions suggests a versatile metabolic capacity, enabling it to engage in fermentation in anaerobic settings while utilizing aerobic respiration when oxygen is available. This adaptability may play a significant role in its interactions with the host’s immune system and the overall microbial community dynamics. ↵↵The presence of E. coli FWSEC0263 in host-associated environments exemplifies the intricate relationships that bacteria maintain with their hosts, potentially influencing nutrient absorption and gut health. Such interactions may also reflect broader ecological functions, including competition with other microbial species and contributions to the microbiome's stability and diversity. Understanding the traits and behaviors of this strain can provide insights into its ecological role and potential implications for host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJF00000000.1 Bac0019985 Escherichia coli strain FWSEC0264 "Escherichia coli strain FWSEC0264 is a Gram-negative bacterium characterized by its rod-shaped morphology and occurrence in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the typical conditions found in mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0264 exhibits metabolic versatility, allowing it to grow in both aerobic and anaerobic environments. ↵↵The ability to switch between different metabolic pathways is particularly advantageous in dynamic host environments, where oxygen levels may fluctuate. Such adaptability suggests that E. coli FWSEC0264 may play a role in various physiological processes within its host. Its presence in pairs or as single cells may facilitate interactions with other microbial communities in the gut, potentially influencing microbial ecology and host health.↵↵Overall, the traits of E. coli strain FWSEC0264 underscore its potential significance in host-associated ecosystems, where it may contribute to nutrient cycling, microbial diversity, and the overall homeostasis of the intestinal microbiome. Further investigations into the strain's specific interactions within its habitat may reveal additional insights into its ecological roles and functions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJG00000000.1 Bac0019986 Escherichia coli strain FWSEC0265 "Escherichia coli strain FWSEC0265 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of many host organisms, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0265 can grow in both the presence and absence of oxygen, allowing it to exploit various niches within its host environment. ↵↵The adaptability of E. coli strain FWSEC0265 to varying oxygen levels suggests its potential role in diverse metabolic processes within host-associated ecosystems. This flexibility may contribute to its interactions with the host microbiome, influencing nutrient cycling and microbial community dynamics. Understanding the specific ecological role of FWSEC0265 within its habitat could provide insights into its contributions to host health and microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJH00000000.1 Bac0019987 Escherichia coli strain FWSEC0267 "Escherichia coli strain FWSEC0267 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which allows it to adapt to various conditions within its host-associated habitat. The optimal growth temperature for FWSEC0267 is 37.0°C, aligning with the typical mammalian body temperature, suggesting that this strain is well-suited for life within a host organism.↵↵The Gram-negative characterization of FWSEC0267 implies the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interaction with the host's immune system. This structural feature, combined with its rod shape, is common among many members of the Enterobacteriaceae family, allowing for efficient nutrient uptake and motility in liquid environments.↵↵The facultative anaerobic nature of FWSEC0267 suggests a metabolic versatility that enables it to exploit a range of carbon sources under different oxygen conditions. This adaptability may facilitate its survival in various niches within the host, where oxygen availability can vary significantly. Understanding the specific environmental conditions and interactions of FWSEC0267 within its host could provide insights into its ecological roles and potential applications in biotechnology or microbiome studies." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJJ00000000.1 Bac0019988 Escherichia coli strain FWSEC0272 "Escherichia coli strain FWSEC0272 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions found within the intestinal tracts of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0272 possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, which is a characteristic feature of many E. coli strains and crucial for its survival in diverse niches within the host.↵↵Given its rod shape and cell arrangement, FWSEC0272 may engage in various interactions with its immediate environment, including the formation of biofilms or participation in microbial communities within the host. The ability to exist in pairs or singles suggests potential for both cooperative and competitive interactions with other microbial species, which can influence the overall microbial ecology of the gut.↵↵The specific adaptation of E. coli strain FWSEC0272 to a host-associated habitat highlights its potential role in nutrient cycling within the host, as well as its involvement in maintaining gut homeostasis. Understanding the ecological dynamics of such strains contributes to our broader knowledge of host-microbe interactions and the functional roles that different E. coli strains play within their respective ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJO00000000.1 Bac0019989 Escherichia coli strain FWSEC0277 "Escherichia coli strain FWSEC0277 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, a condition that aligns with the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain FWSEC0277 possesses the metabolic flexibility to utilize both aerobic and anaerobic respiration, allowing it to survive in diverse environments within host organisms.↵↵The Gram-negative nature of this strain suggests the presence of an outer membrane that could influence its interactions with the host immune system, although specific interactions are not detailed in the provided traits. Its rod shape may facilitate motility and colonization within the gastrointestinal tract, where many E. coli strains are commonly found. The ability to exist in pairs or as single cells may provide advantages in nutrient acquisition and adaptability to varying microenvironments within the host.↵↵Overall, the ecological implications of E. coli strain FWSEC0277 being a facultative anaerobe in a host-associated habitat highlight its potential role in the complex microbiota of the host, contributing to metabolic processes and possibly influencing the host's health and nutrient absorption. This adaptability underscores the significance of E. coli strains in understanding microbial dynamics within host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJT00000000.1 Bac0019990 Escherichia coli strain FWSEC0280 "Escherichia coli strain FWSEC0280 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments, displaying a cellular arrangement of singles and pairs. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions of its animal hosts. As a facultative anaerobe, E. coli strain FWSEC0280 possesses the metabolic versatility to grow in both aerobic and anaerobic conditions, allowing it to exploit a variety of ecological niches within the host.↵↵The presence of this strain in host-associated habitats suggests a potential role in the complex microbial ecosystems of the gastrointestinal tract, where it may contribute to nutrient metabolism and the maintenance of gut homeostasis. The ability to exist in pairs indicates a potential for cooperative interactions, which may enhance survival and adaptation within the host environment. Understanding the specific traits of Escherichia coli strain FWSEC0280 can provide insights into its ecological functions and interactions within the microbiome, highlighting the importance of such microbes in host health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRJW00000000.1 Bac0019991 Escherichia coli strain FWSEC0289 "Escherichia coli strain FWSEC0289 is a Gram-negative rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to survive in both aerobic and anaerobic environments, which is a common trait among members of the E. coli species. E. coli FWSEC0289 thrives optimally at a temperature of 37.0°C, a condition that corresponds with the body temperature of many warm-blooded hosts, reflecting its adaptation to a host-associated habitat.↵↵Given its facultative anaerobic nature and host-associated lifestyle, E. coli FWSEC0289 may play significant roles in the microbial ecology of the gut, contributing to nutrient cycling and the maintenance of gut homeostasis. The specific interactions this strain may have with its host or other microbial inhabitants remain to be fully characterized, but its adaptability to varying oxygen levels suggests a potential for versatile metabolic functions within its ecological niche. This adaptability may also allow E. coli FWSEC0289 to persist in diverse environments within the host, providing insights into the complex dynamics of gut microbiota and their responses to host physiological changes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRKE00000000.1 Bac0019992 Escherichia coli strain FWSEC0290 "Escherichia coli strain FWSEC0290 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the body temperature of its host organisms, indicating its adaptation to a host-associated habitat. E. coli FWSEC0290 is classified as a facultative anaerobe, allowing it to metabolize in both aerobic and anaerobic environments, which enhances its survival and versatility within various host niches.↵↵The ability of E. coli FWSEC0290 to exist as single cells or in pairs may facilitate its interactions with the host’s immune system and microbiota, potentially influencing its ecological role within the host. Given its habitat and physiological characteristics, this strain may play a significant role in the microbial community dynamics within the gastrointestinal tract of mammals, contributing to nutrient metabolism and gut health. The adaptability of E. coli FWSEC0290 to fluctuating oxygen levels further underscores its importance in host-associated ecosystems, where oxygen availability can vary significantly. Understanding the specific interactions and functions of this strain within its environment could provide valuable insights into the broader ecological roles of E. coli in host-associated habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRKF00000000.1 Bac0019993 Escherichia coli strain FWSEC0298 "Escherichia coli strain FWSEC0298 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the typical body temperature of many warm-blooded hosts. E. coli FWSEC0298 is classified as a facultative anaerobe, allowing it to utilize both aerobic and anaerobic respiration depending on the availability of oxygen. ↵↵The habitat of E. coli FWSEC0298 is host-associated, indicating its adaptation to living within the internal environments of various hosts, potentially including humans and other mammals. This association suggests that the strain may play a role in the complex microbial communities found in the gastrointestinal tract, where it could contribute to nutrient metabolism and the maintenance of gut homeostasis.↵↵Understanding the traits of E. coli FWSEC0298 can provide insight into its ecological roles within the host environment, particularly in relation to the dynamics of microbial interactions and the potential influence on host health. Given its facultative anaerobic nature, this strain may participate in various metabolic processes that are crucial for both its survival and that of its host, highlighting the intricate dependencies that exist within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRKN00000000.1 Bac0019994 Escherichia coli strain FWSEC0320 "Escherichia coli strain FWSEC0320 is a Gram-negative, rod-shaped bacterium that predominantly exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the typical human body temperature, suggesting its adaptation to host-associated environments. As a facultative anaerobe, E. coli FWSEC0320 can grow in both aerobic and anaerobic conditions, allowing it to exploit a range of ecological niches within host organisms. ↵↵The host-associated habitat of this strain indicates a potential symbiotic relationship or a role in the microbiota of its host, which could contribute to various metabolic processes. The ability to thrive in diverse oxygen conditions may also enable E. coli FWSEC0320 to colonize different anatomical sites within its host, where varying oxygen levels exist. This adaptability is a hallmark of many E. coli strains and emphasizes the importance of studying specific strains, such as FWSEC0320, to understand their unique interactions within host microbiomes and their potential impact on host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRKX00000000.1 Bac0019995 Escherichia coli strain FWSEC0323 "Escherichia coli strain FWSEC0323 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0323 can grow in both aerobic and anaerobic environments, allowing it to inhabit diverse niches within a host where oxygen availability may vary.↵↵The capacity of E. coli FWSEC0323 to adapt to different oxygen conditions suggests a versatile metabolic capability, which may play a role in its survival and function within the intestinal microbiota of its host. Such adaptability is crucial for maintaining its presence in complex microbial communities, where competition for resources and varying environmental conditions are common. This strain exemplifies the ecological resilience of E. coli, a species known for its diverse roles in both health and disease within various hosts. Understanding the specific traits of FWSEC0323 could provide insights into its interactions within host-associated ecosystems, including its potential contributions to nutrient cycling and microbial homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLA00000000.1 Bac0019996 Escherichia coli strain FWSEC0332 "Escherichia coli strain FWSEC0332 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0332 can metabolize in both the presence and absence of oxygen, allowing it to survive in diverse environments within the host.↵↵The ability of E. coli FWSEC0332 to exist in various arrangements, such as singles and pairs, may play a significant role in its interactions within host environments. This characteristic can influence its colonization dynamics and interactions with host microbiota, potentially affecting nutrient acquisition and competitive fitness. The strain's adaptation to host-associated habitats and its metabolic flexibility suggest that it may participate in complex ecological relationships within the gastrointestinal tract of its host, contributing to the overall microbial diversity and functionality of the gut microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLI00000000.1 Bac0019997 Escherichia coli strain FWSEC0337 "Escherichia coli strain FWSEC0337 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average human body temperature, suggesting an adaptation to host-associated environments. E. coli FWSEC0337 is classified as a facultative anaerobe, indicating its capacity to grow in both aerobic and anaerobic conditions, a trait that enhances its versatility in diverse biological niches.↵↵The habitat of E. coli FWSEC0337 being host-associated implies a potential symbiotic relationship with its host, where it may play a role in various metabolic processes or contribute to the maintenance of gut homeostasis. The ability of this strain to exist in varying oxygen levels may allow it to colonize and survive in different microenvironments within the host, such as the intestinal lumen, where oxygen availability fluctuates.↵↵Overall, E. coli strain FWSEC0337 exemplifies the adaptability of enteric bacteria to their host environments, providing insights into the intricate dynamics of microbial communities in the gastrointestinal tract. Understanding the specific traits and behaviors of this strain could further elucidate its ecological contributions and interactions within host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLN00000000.1 Bac0019998 Escherichia coli strain FWSEC0339 "Escherichia coli strain FWSEC0339 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that corresponds to the physiological conditions found in many mammalian hosts. E. coli FWSEC0339 is categorized as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, which is a common adaptation in enteric bacteria.↵↵The host-associated habitat of E. coli FWSEC0339 suggests that it may play a role in the microbial communities of intestines, where it can interact with other microorganisms and the host itself. This ecological niche is crucial, as it highlights the potential for this strain to be involved in nutrient cycling and possibly influencing host metabolism. The ability to adapt to varying oxygen levels further underscores its versatility and potential significance in diverse environments within the host.↵↵Overall, Escherichia coli strain FWSEC0339 exemplifies the characteristics of a typical enteric bacterium, and its facultative anaerobic nature, combined with its optimal growth temperature, positions it well for survival and functional roles in host-associated habitats. Understanding this strain's traits may provide insights into its ecological functions and interactions within the complex microbial ecosystems of the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLP00000000.1 Bac0019999 Escherichia coli strain FWSEC0340 "Escherichia coli strain FWSEC0340 is a Gram-negative, rod-shaped bacterium characterized by its growth in pairs or as single cells. This strain, like many members of the E. coli species, thrives optimally at 37.0°C, which corresponds to the average human body temperature, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0340 is capable of surviving in both aerobic and anaerobic environments, allowing it to exploit a range of ecological niches within its host.↵↵The ability to grow in varying oxygen conditions enhances its metabolic versatility, enabling it to participate in diverse biochemical processes. This trait potentially allows E. coli strain FWSEC0340 to contribute to the microbial community dynamics within the host, influencing nutrient cycling and possibly interacting with other microbial species. Given its association with host environments, FWSEC0340 may play a role in the gut microbiome, where it can influence host health and metabolic functions.↵↵The specific ecological role of E. coli strain FWSEC0340 remains to be fully elucidated; however, its combination of traits suggests that it may be involved in maintaining gut homeostasis, potentially affecting digestion and the immune response. Further studies are warranted to explore the precise interactions and contributions of this strain within its ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLQ00000000.1 Bac0020000 Escherichia coli strain FWSEC0341 "Escherichia coli strain FWSEC0341 is a Gram-negative, rod-shaped bacterium, typically existing in pairs or singly. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of many mammalian hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0341 is capable of utilizing both aerobic and anaerobic metabolic pathways, allowing it to survive in various oxygen conditions, which is advantageous in diverse host environments.↵↵The ability of E. coli strain FWSEC0341 to inhabit host-associated niches may contribute to its metabolic versatility, enabling it to exploit various substrates derived from the host. Understanding this strain's specific adaptations can provide insights into its role within the microbiome and its potential interactions with host physiology. Given the general ecological role of E. coli in digestive processes and nutrient cycling, FWSEC0341 may play a significant part in maintaining host health and influencing microbial community dynamics in the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLR00000000.1 Bac0020001 Escherichia coli strain FWSEC0344 "Escherichia coli strain FWSEC0344 is a Gram-negative bacterium characterized by its rod shape and typical arrangement in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli FWSEC0344 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, a trait that may enhance its survival and metabolic versatility within diverse host niches.↵↵The host-associated habitat of E. coli FWSEC0344 implies that it may play a role in the complex microbiota of its specific host, potentially contributing to nutrient cycling and metabolic processes. This adaptability not only underscores the ecological significance of E. coli strains in their respective environments but also highlights the importance of understanding their interactions within host systems. The unique characteristics of E. coli FWSEC0344 may provide insights into the broader ecological roles of E. coli strains and their contributions to host health and microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLU00000000.1 Bac0020002 Escherichia coli strain FWSEC0347 "Escherichia coli strain FWSEC0347 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which coincides with the physiological temperature of many mammalian hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0347 can grow in both aerobic and anaerobic environments, allowing it to exploit a variety of ecological niches within its host. ↵↵The ability to survive in different oxygen conditions suggests that this strain may play a versatile role in the microbiome of its host, potentially engaging in metabolic activities that contribute to nutrient cycling or host health. Understanding the specific interactions and functions of E. coli FWSEC0347 in its host environment may provide insights into its ecological significance and the broader implications for host-microbe relationships." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRLX00000000.1 Bac0020003 Escherichia coli strain FWSEC0350 "Escherichia coli strain FWSEC0350 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the average body temperature of many warm-blooded hosts. E. coli FWSEC0350 is categorized as a facultative anaerobe, allowing it to grow in both the presence and absence of oxygen, which enhances its adaptability to various microenvironments within host-associated habitats.↵↵The habitat of E. coli strain FWSEC0350 suggests a close association with host organisms, indicating its potential role in the gastrointestinal tract or other bodily systems where it may contribute to the microbial community dynamics. The facultative anaerobic nature of this strain allows it to exploit diverse metabolic pathways, enabling survival in fluctuating oxygen levels often encountered in host-associated environments.↵↵Furthermore, the ability of Escherichia coli FWSEC0350 to exist in pairs or as single cells may facilitate its interactions within host microbiomes, potentially influencing microbial community structure and function. This trait may also provide insights into its competitive strategies for nutrient acquisition and colonization, highlighting the ecological significance of this strain in maintaining host-microbe homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRMA00000000.1 Bac0020004 Escherichia coli strain FWSEC0351 "Escherichia coli strain FWSEC0351 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at a temperature of 37.0°C, a condition that aligns with its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0351 can grow in both aerobic and anaerobic environments, allowing it to utilize a variety of metabolic pathways depending on the availability of oxygen.↵↵The ability to thrive in diverse oxygen conditions is a hallmark of E. coli species, contributing to their ecological versatility within host organisms. This strain's association with hosts may suggest roles in symbiotic relationships, potentially influencing gut microbiome dynamics. Furthermore, understanding the metabolic capabilities and growth conditions of FWSEC0351 could provide insights into its potential contributions to nutrient cycling and overall host health. Thus, the unique traits of E. coli strain FWSEC0351 highlight its adaptive strategies for survival in dynamic environments, underscoring the importance of such microbes in microbiological research and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRMB00000000.1 Bac0020005 Escherichia coli strain FWSEC0356 "Escherichia coli strain FWSEC0356 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0 °C, aligning with the physiological temperature of its host organisms. As a facultative anaerobe, E. coli FWSEC0356 is capable of surviving in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels within its host-associated habitats.↵↵Being host-associated, this strain may play a role in the complex microbial communities found within the gastrointestinal tracts of warm-blooded animals, where it can contribute to nutrient absorption and gut health. The ability to exist in different arrangements and adapt to oxygen availability may provide this strain with ecological advantages in diverse host environments, potentially influencing its interactions within the microbiota. Understanding the specific roles of E. coli FWSEC0356 in its associated habitats could provide insights into its contributions to host health and the broader implications for microbial ecology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRMG00000000.1 Bac0020006 Escherichia coli strain FWSEC0361 "Escherichia coli strain FWSEC0361 is a Gram-negative, rod-shaped bacterium that exhibits a cell arrangement characterized by pairs and singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical human body temperature, suggesting a close association with host environments. As a facultative anaerobe, FWSEC0361 is capable of utilizing oxygen for respiration when available, yet can also survive in anaerobic conditions, enabling it to inhabit diverse ecological niches within its host.↵↵The habitat of E. coli strain FWSEC0361 is primarily host-associated, indicating its adaptation to living within a host organism, potentially contributing to its metabolic versatility and ecological role. This trait is particularly significant, as it highlights the bacterium's potential involvement in various host-microbe interactions, ranging from mutualistic relationships to opportunistic behaviors under certain conditions. Understanding the specific habitat and metabolic capabilities of FWSEC0361 may provide insights into its role in the microbial communities within the gastrointestinal tract of its host, where it could influence nutrient absorption and compete with other microbial species. Further investigation into this strain could reveal its contributions to host health and the overall dynamics of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRML00000000.1 Bac0020007 Escherichia coli strain FWSEC0364 "Escherichia coli strain FWSEC0364 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of its common host environments. As a facultative anaerobe, FWSEC0364 demonstrates metabolic versatility, allowing it to utilize both aerobic and anaerobic respiration depending on the availability of oxygen in its habitat.↵↵The habitat of FWSEC0364 is host-associated, indicating a close relationship with a specific host organism, which can provide insights into its ecological role and interactions within a microbiome. Given its Gram-negative classification, this strain likely possesses a complex cell envelope structure, including an outer membrane that may contribute to its survival and adaptability in various conditions encountered within the host environment.↵↵Understanding the characteristics of E. coli strain FWSEC0364 can shed light on the intricate dynamics of host-microbe interactions, particularly in relation to nutrient cycling and the maintenance of homeostasis within the host. The adaptability of this strain to both aerobic and anaerobic conditions suggests a potential role in metabolic processes that are crucial for the host's health and overall microbial community structure." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRMO00000000.1 Bac0020008 Escherichia coli strain FWSEC0370 "Escherichia coli strain FWSEC0370 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which is consistent with the body temperature of many warm-blooded hosts. As a facultative anaerobe, FWSEC0370 is capable of surviving in both aerobic and anaerobic environments, allowing it to occupy diverse niches within its host-associated habitat.↵↵The facultative anaerobic nature of FWSEC0370 suggests that it can adapt to varying oxygen levels, which is a critical trait for survival in the dynamic environments of the gastrointestinal tract and other host-associated sites. This adaptability may contribute to its potential role in microbial communities, where competition for resources and interactions with other microorganisms can influence its growth and function.↵↵Overall, the ability of Escherichia coli strain FWSEC0370 to thrive in host-associated environments, combined with its morphological characteristics and metabolic flexibility, underscores its significance in the context of microbial ecology and host-microbe interactions. Understanding the specific roles of such strains in their native habitats may provide insights into their contributions to host health and microbial ecosystem dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRMU00000000.1 Bac0020009 Escherichia coli strain FWSEC0374 "Escherichia coli strain FWSEC0374 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is categorized as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It is optimally active at a temperature of 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting a potential adaptation to host-associated habitats.↵↵The habitat preference of FWSEC0374 implies a close relationship with host organisms, where it may play a role in various biological processes. As a member of the E. coli species, it may contribute to the complex microbial communities found in the intestines of mammals, possibly influencing nutrient absorption and gut health. The strain’s capacity to grow in the presence or absence of oxygen further enhances its adaptability within diverse environments, such as the intestinal lumen, where oxygen levels can fluctuate.↵↵Understanding the specific traits of E. coli strain FWSEC0374 helps illuminate its potential functional roles in host-associated ecosystems. The strain's optimal growth temperature and oxygen requirements suggest that it may be well-suited for interactions with host metabolism, potentially contributing to the symbiotic relationships that are crucial for maintaining gut homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRMY00000000.1 Bac0020010 Escherichia coli strain FWSEC0378 "Escherichia coli strain FWSEC0378 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of many mammalian hosts, suggesting an adaptation to host-associated environments. As a facultative anaerobe, FWSEC0378 can grow in both the presence and absence of oxygen, allowing it to occupy a variety of niches within the host's microbiome.↵↵The presence of E. coli in host-associated habitats highlights its potential role in various biological processes, including nutrient metabolism and the maintenance of gut homeostasis. The ability of FWSEC0378 to survive under varying oxygen conditions may also confer advantages in fluctuating environments within the host, where oxygen levels can vary significantly. Moreover, its rod shape and arrangement in pairs or as singles may influence its interaction with host tissues and other microbial species, potentially impacting community dynamics in the microbiome.↵↵Understanding the specific traits of E. coli strain FWSEC0378 enhances our knowledge of its ecological role and biological functions within host-associated environments, emphasizing the importance of such strains in maintaining microbial balance and health in their respective habitats." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRNC00000000.1 Bac0020011 Escherichia coli strain FWSEC0379 "Escherichia coli strain FWSEC0379 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with its association with host organisms, suggesting an adaptation to the warm internal environments of its hosts. As a facultative anaerobe, FWSEC0379 has the versatility to utilize oxygen for respiration when available but can also grow in its absence, allowing it to occupy diverse microenvironments within host-associated habitats.↵↵The combination of its Gram-negative cell wall structure and rod morphology contributes to its ecological success, as these traits can impact its interactions with host immune systems and other microbial communities. Moreover, the facultative anaerobic lifestyle enhances its ability to colonize various niches within the host, adapting to fluctuating oxygen levels. ↵↵Understanding the physiological traits of E. coli strain FWSEC0379 provides insights into its potential roles in host-associated microbiomes, where it may contribute to nutrient cycling or influence host health. The traits observed suggest that this strain could serve as an important model for studying microbial adaptation in host environments, shedding light on the complex dynamics of host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRND00000000.1 Bac0020012 Escherichia coli strain FWSEC0383 "Escherichia coli strain FWSEC0383 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the body temperature of many warm-blooded hosts. E. coli FWSEC0383 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, a trait that enhances its adaptability to varying environmental conditions within host-associated habitats.↵↵The organism's Gram-negative cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, contributes to its resilience and potential interactions with host immune responses. Its habitat being primarily host-associated suggests a close ecological relationship with its environment, likely involving interactions with other microbial flora within the gastrointestinal tract of animals.↵↵This strain, like other E. coli, could play a significant role in nutrient cycling and digestion within its host by participating in metabolic processes that benefit both the microbe and the host organism. Understanding the specific traits of E. coli FWSEC0383 can provide insights into its ecological role and functional capabilities within its biological niche, highlighting its importance in the complex dynamics of microbial communities associated with warm-blooded hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRNH00000000.1 Bac0020013 Escherichia coli strain FWSEC0390 "Escherichia coli strain FWSEC0390 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, which corresponds to the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. E. coli strain FWSEC0390 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, a trait that enhances its versatility in various host conditions.↵↵Being host-associated, E. coli strain FWSEC0390 may play a role in the microbial ecology of its specific environment, likely contributing to the gut microbiota dynamics. Its facultative anaerobic nature allows it to exploit different metabolic pathways depending on the oxygen availability, which may be crucial for its survival and competitiveness within the host's microenvironment. Understanding the physiological traits of this strain can provide insights into its potential functional roles in nutrient metabolism and interaction with the host immune system, highlighting the intricate relationships that exist between host-associated microbes and their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRNO00000000.1 Bac0020014 Escherichia coli strain FWSEC0394 "Escherichia coli strain FWSEC0394 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in pairs or singly. It thrives optimally at a temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts. This strain is classified as a facultative anaerobe, indicating its versatility in utilizing both aerobic and anaerobic metabolic pathways depending on the availability of oxygen.↵↵E. coli FWSEC0394 is primarily found in host-associated habitats, suggesting a close association with the microbiota of its host organism. This trait is indicative of the strain's potential role in the gut microbiome, where it may contribute to various metabolic processes and nutrient cycling. The ability to survive in both oxygen-rich and oxygen-poor environments enhances its adaptability within the host's gastrointestinal tract.↵↵The unique combination of these traits emphasizes the ecological significance of E. coli strain FWSEC0394 in maintaining host health and nutrient homeostasis. Furthermore, its adaptability to different oxygen conditions may allow it to occupy various niches within the host, potentially influencing microbial community dynamics and interactions within the gut ecosystem. Understanding such strains may offer insights into their roles in health and disease, as well as their interactions with other microbial species present in the host." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRNR00000000.1 Bac0020015 Escherichia coli strain FWSEC0398 "Escherichia coli strain FWSEC0398 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, allowing it to thrive in varying oxygen conditions, which may be advantageous in its host-associated habitat. Optimal growth occurs at a temperature of 37.0 °C, aligning with the physiological temperature of many mammalian hosts, which likely influences the strain's adaptation and survival strategies within such environments.↵↵Given its classification as a facultative anaerobe, E. coli FWSEC0398 can switch between aerobic respiration and fermentation depending on the availability of oxygen. This metabolic flexibility may allow it to exploit a range of niches within host organisms, potentially contributing to its persistence and adaptability in diverse biological contexts. Understanding the ecological role of E. coli strain FWSEC0398, particularly its interactions with host factors and other microbial communities, could provide insights into its functional roles in gut microbiomes or other host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRNV00000000.1 Bac0020016 Escherichia coli strain FWSEC0400 "Escherichia coli strain FWSEC0400 is a Gram-negative, rod-shaped bacterium commonly found in host-associated environments. This strain exhibits a cell arrangement characterized by singles and pairs, indicating a degree of variation in its growth pattern. E. coli FWSEC0400 thrives optimally at 37.0°C, which corresponds to the typical body temperature of warm-blooded hosts, suggesting its adaptation to a mammalian-associated habitat.↵↵As a facultative anaerobe, E. coli FWSEC0400 possesses the metabolic flexibility to grow in both aerobic and anaerobic conditions. This trait enhances its survival and proliferation in diverse environments, including the gastrointestinal tracts of its hosts, where oxygen levels can vary significantly. The ability to switch between aerobic respiration and fermentation allows E. coli FWSEC0400 to exploit varying nutrient availability effectively.↵↵Given its characteristics, E. coli strain FWSEC0400 may play a critical role in the microbial ecology of its host, potentially aiding in digestion and nutrient absorption. Its adaptability to different oxygen levels and growth patterns highlights the importance of this strain in maintaining a balanced microbiome within host-associated habitats. Further studies could elucidate the specific interactions and contributions of E. coli FWSEC0400 to the overall health and functioning of its host ecosystem." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRNX00000000.1 Bac0020017 Escherichia coli strain FWSEC0401 "Escherichia coli strain FWSEC0401 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many mammalian hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0401 can grow in both the presence and absence of oxygen, allowing it to exploit diverse metabolic environments within host organisms.↵↵The host-associated nature of this strain indicates a potential role in the microbial communities found within the gastrointestinal tracts of animals, where E. coli species are commonly present. Its ability to thrive at body temperature and adapt to varying oxygen levels may provide insights into its interactions with the host's immune system and its potential contributions to gut microbiota dynamics. Understanding these traits could lead to further exploration of the ecological roles of E. coli strains like FWSEC0401 in health and disease contexts, emphasizing their importance in microbial ecology and host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRNY00000000.1 Bac0020018 Escherichia coli strain FWSEC0405 "Escherichia coli strain FWSEC0405 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0405 can grow in both aerobic and anaerobic conditions, allowing it to exploit diverse environments within its host’s gastrointestinal tract.↵↵The significant adaptability of E. coli strain FWSEC0405 to varying oxygen levels suggests its potential role in different metabolic processes within host systems. This versatility not only enhances its survival in fluctuating conditions but may also influence the microbial community dynamics in its habitat. Understanding the specific interactions and functions of this strain within the host could provide insights into its ecological significance and potential contributions to host health or dysbiosis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROB00000000.1 Bac0020019 Escherichia coli strain FWSEC0407 "Escherichia coli strain FWSEC0407 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain is adapted to a host-associated habitat, suggesting a close relationship with its biological hosts. E. coli FWSEC0407 exhibits a facultative anaerobic metabolism, allowing it to thrive in both the presence and absence of oxygen. The optimal growth temperature for this strain is 37.0°C, which aligns with the physiological temperature of many mammalian hosts, further indicating its potential role in host-associated environments.↵↵The combination of its Gram-negative cell wall structure and rod morphology is characteristic of many members of the Enterobacteriaceae family. Given its facultative anaerobic nature, E. coli FWSEC0407 is capable of utilizing a variety of metabolic pathways, potentially allowing it to adapt to fluctuating oxygen levels within its host environment. ↵↵This strain’s ability to grow at an optimal temperature of 37.0°C may facilitate its survival and proliferation within warm-blooded hosts, where it could play a significant role in the microbiota composition. The ecological insight gained from understanding E. coli FWSEC0407 emphasizes the importance of host-associated microbes in maintaining gut health and their potential contributions to nutrient cycling and metabolic processes within their ecological niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROD00000000.1 Bac0020020 Escherichia coli strain FWSEC0408 "Escherichia coli strain FWSEC0408 is a Gram-negative, rod-shaped bacterium characterized by its ability to exist in both single and paired cell arrangements. This strain thrives optimally at a temperature of 37.0°C, which aligns with its association with host organisms, suggesting a potential adaptation to mammalian physiology. As a facultative anaerobe, E. coli FWSEC0408 can survive in both aerobic and anaerobic environments, providing it with a versatile metabolic capacity that may enhance its ecological niche within host-associated habitats.↵↵Given its traits, E. coli FWSEC0408 may play a role in various biological processes within its host, such as nutrient metabolism or microbial community dynamics in the gastrointestinal tract. Its facultative anaerobic nature allows it to adapt to varying oxygen levels, further supporting its persistence in diverse environments. Understanding the specific interactions of this strain with host organisms could provide insights into its ecological function and potential contributions to the microbiome. This adaptability underscores the importance of E. coli strains in maintaining microbial balance within host systems, highlighting their potential role in both health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROE00000000.1 Bac0020021 Escherichia coli strain FWSEC0413 "Escherichia coli strain FWSEC0413 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical mammalian body temperature, suggesting its adaptation to a host-associated environment. As a facultative anaerobe, E. coli FWSEC0413 can grow in both the presence and absence of oxygen, allowing it to occupy diverse niches within its host.↵↵The ability of E. coli FWSEC0413 to exist in pairs or as singles may facilitate its interactions with other microbial taxa and host cells, potentially influencing its ecological role within the microbiome. This strain’s host-associated habitat points to a likely symbiotic relationship with its host, where it might contribute to various metabolic processes or nutrient cycling. This adaptability to varying oxygen levels could further enhance its ecological versatility, enabling it to occupy different microenvironments within the host.↵↵The study of E. coli strain FWSEC0413 provides insight into the dynamics of host-associated microbial communities, particularly in how such bacteria can coexist and thrive in fluctuating conditions, ultimately contributing to the overall health and functionality of their ecosystems. Understanding its specific traits and behavior may shed light on the broader ecological roles of E. coli strains within host systems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROI00000000.1 Bac0020022 Escherichia coli strain FWSEC0414 "Escherichia coli strain FWSEC0414 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, indicating a preference for conditions often found within warm-blooded hosts. As a facultative anaerobe, FWSEC0414 can grow in both the presence and absence of oxygen, allowing it to adapt to various environments within its host.↵↵The habitat of FWSEC0414 is classified as host-associated, suggesting a close relationship with host organisms. This trait highlights the potential for the strain to engage in interactions with host microbiomes or contribute to metabolic processes that may be beneficial or neutral to its host. The ability to exist in pairs or as single cells may facilitate its colonization and persistence in diverse niches within the host environment.↵↵The combination of its Gram-negative cell wall structure and facultative anaerobic metabolism suggests that FWSEC0414 may utilize a variety of substrates for energy production, which could play a role in its adaptability. Understanding the specific interactions and roles of E. coli strain FWSEC0414 within its host could provide insights into microbial community dynamics and the functional implications of host-associated bacteria in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROJ00000000.1 Bac0020023 Escherichia coli strain FWSEC0415 "Escherichia coli strain FWSEC0415 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of warm-blooded hosts, suggesting its adaptation to a host-associated environment. As a facultative anaerobe, FWSEC0415 can grow in both the presence and absence of oxygen, allowing it to exploit various niches within its host.↵↵The habitat of E. coli strain FWSEC0415 indicates its potential role in the microbiota of mammals, where it may contribute to various metabolic processes. Its ability to grow under different oxygen conditions may provide a competitive advantage in diverse environments within the host, such as the gut, where oxygen levels can vary significantly. This adaptability underscores the ecological versatility of E. coli strains in host-associated environments, where they can play roles ranging from mutualistic to opportunistic interactions. Further research into strain FWSEC0415 could illuminate specific functions it performs within its ecological niche, offering insights into the complex dynamics of host-microbe interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROK00000000.1 Bac0020024 Escherichia coli strain FWSEC0418 "Escherichia coli strain FWSEC0418 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0418 can grow in both aerobic and anaerobic environments, allowing it to occupy diverse niches within host organisms.↵↵The ability to survive under varying oxygen conditions may facilitate its colonization in different parts of the host's gastrointestinal tract, where oxygen levels can fluctuate. This metabolic versatility is a characteristic feature of many Escherichia coli strains, enabling them to compete effectively for resources in complex microbial communities.↵↵While the specific ecological role and interactions of strain FWSEC0418 remain to be fully elucidated, its habitat association indicates potential involvement in the microbiota of its host. Given the general characteristics of Escherichia coli, it may play a role in nutrient processing or maintaining gut homeostasis, although the absence of detailed ecological data precludes definitive conclusions about its specific functions within the host environment. Overall, Escherichia coli strain FWSEC0418 exemplifies the adaptability and ecological significance of bacteria in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRON00000000.1 Bac0020025 Escherichia coli strain FWSEC0423 "Escherichia coli strain FWSEC0423 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, FWSEC0423 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within host organisms.↵↵The host-associated nature of E. coli strains, including FWSEC0423, highlights the intricate relationships that these bacteria maintain with their hosts, often contributing to the complex microbiota of the gastrointestinal tract. This strain exemplifies the dynamic interplay between microbial life and host physiology, where it may play roles in nutrient cycling and modulation of the host immune response. ↵↵The ability of FWSEC0423 to thrive at the optimal temperature of 37.0°C suggests it may be well-adapted to the mammalian host environment, potentially impacting its ecological interactions and functions within a host-associated microbiome. Understanding the specific traits of this strain may provide insights into its ecological significance and functional roles in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROS00000000.1 Bac0020026 Escherichia coli strain FWSEC0426 "Escherichia coli strain FWSEC0426 is a Gram-negative, rod-shaped bacterium that can be found in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its metabolic versatility, as it can survive and grow in both aerobic and anaerobic environments. The optimal growth temperature for FWSEC0426 is approximately 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting that this strain is well-adapted to a host-associated habitat.↵↵The ability of E. coli strain FWSEC0426 to thrive in various oxygen conditions may provide it with a competitive advantage in the diverse environments within a host. Its rod shape and specific arrangement in pairs or singles may also facilitate its mobility and colonization within the host, potentially influencing its interactions with the host's microbiome. ↵↵Further research into the ecological roles of FWSEC0426 in its host environment could reveal insights into its contributions to gut health or its interactions with other microbial species. Understanding these dynamics may shed light on the broader implications of E. coli strains in host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROV00000000.1 Bac0020027 Escherichia coli strain FWSEC0427 "Escherichia coli strain FWSEC0427 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the physiological temperature of its common hosts, including mammals. As a facultative anaerobe, FWSEC0427 can grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within host-associated habitats.↵↵The host-associated nature of this strain suggests that it may play a role in the complex microbial communities found within the gastrointestinal tracts of its hosts. Such environments are rich in nutrients and offer a diverse range of interactions with both host and other microbial species. The adaptability of FWSEC0427 to different oxygen levels enhances its survival and potential metabolic versatility, which could be significant for nutrient cycling and maintaining homeostasis within its ecological niche.↵↵Understanding the specific traits of Escherichia coli strain FWSEC0427 and its ecological context may provide insights into its role in host health and microbial dynamics. Further investigations could elucidate its contributions to gut microbiota stability and function, particularly in relation to nutrient absorption and immune modulation in host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RROW00000000.1 Bac0020028 Escherichia coli strain FWSEC0432 "Escherichia coli strain FWSEC0432 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which closely aligns with the average body temperature of many warm-blooded hosts, suggesting a strong association with host environments. As a facultative anaerobe, FWSEC0432 can grow in both the presence and absence of oxygen, allowing it to adapt to varying conditions within host-associated habitats.↵↵The ability of this strain to occupy diverse ecological niches, particularly within the gastrointestinal tracts of hosts, underscores its adaptability and potential interactions within microbial communities. This adaptability may facilitate its role in nutrient cycling and metabolic processes, contributing to the overall health of its host environment. Such traits suggest that E. coli strain FWSEC0432 could be an important player in the dynamics of host-associated microbiomes, influencing both microbial diversity and host physiology in various ecological contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRPB00000000.1 Bac0020029 Escherichia coli strain FWSEC0438 "Escherichia coli strain FWSEC0438 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, commonly found within the gastrointestinal tract of warm-blooded animals, including humans. As a facultative anaerobe, FWSEC0438 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within its host's digestive system.↵↵The ability of E. coli strain FWSEC0438 to survive and proliferate in the host's gut highlights its potential role in the complex microbial community, contributing to nutrient metabolism and gut health. Additionally, its facultative anaerobic nature suggests that it can effectively compete for resources within fluctuating oxygen levels, further emphasizing its ecological significance. Understanding the specific traits of FWSEC0438 can provide insights into its interactions within the microbiome and its potential contributions to host physiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRPG00000000.1 Bac0020030 Escherichia coli strain FWSEC0439 "Escherichia coli strain FWSEC0439 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is adapted to a host-associated environment, indicating its presence in association with living organisms, which is characteristic of many E. coli strains. E. coli FWSEC0439 demonstrates facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic conditions, which is advantageous for its survival in various host environments.↵↵The optimal growth temperature for E. coli FWSEC0439 is 37.0°C, which aligns with the average body temperature of warm-blooded hosts, further supporting its adaptation to a host-associated niche. This temperature preference suggests that the strain may be well-suited to inhabit the intestinal tract of mammals, where it can play a role in digestion and nutrient absorption.↵↵Understanding the traits of Escherichia coli strain FWSEC0439 contributes to our knowledge of its potential functions in microbial communities within host organisms. Its facultative anaerobic nature and optimal growth conditions highlight the adaptability of this strain in host-associated environments, which may influence microbial dynamics and interactions within the gut microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRPH00000000.1 Bac0020031 Escherichia coli strain FWSEC0440 "Escherichia coli strain FWSEC0440 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments, which is characteristic of many members of the E. coli species. FWSEC0440 has an optimal growth temperature of 37.0°C, aligning with the physiological temperature of many mammalian hosts, suggesting its adaptation to host-associated habitats.↵↵As a member of the Enterobacteriaceae family, E. coli strain FWSEC0440 likely plays a role in the complex microbiota of its host, contributing to various metabolic processes. The ability to grow in diverse oxygen conditions allows it to occupy niches within the host environment that may be oxygen-rich or oxygen-poor. This adaptability may facilitate its survival and proliferation in fluctuating physiological conditions encountered within the host. Understanding the specific ecological interactions and the metabolic pathways utilized by FWSEC0440 could provide insights into the functional roles of E. coli in microbial communities and its responses to host health and disease states." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRPI00000000.1 Bac0020032 Escherichia coli strain FWSEC0443 "Escherichia coli strain FWSEC0443 is a Gram-negative, rod-shaped bacterium that typically arranges itself in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, FWSEC0443 can adapt to varying oxygen levels, allowing it to survive in diverse environments within the host. ↵↵The ability to grow in both aerobic and anaerobic conditions highlights the metabolic versatility of this strain, which may play a crucial role in its interaction with the host's microbiome. Such adaptability could facilitate its survival in the fluctuating oxygen environments commonly encountered in host-associated niches. Therefore, understanding the ecological role of E. coli FWSEC0443 may provide insights into its contributions to host health and the dynamics of microbial communities within the gastrointestinal tract." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRPL00000000.1 Bac0020033 Escherichia coli strain FWSEC0515 "Escherichia coli strain FWSEC0515 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which corresponds to the average human body temperature, indicating its potential association with warm-blooded hosts. As a facultative anaerobe, FWSEC0515 can adapt to both aerobic and anaerobic environments, allowing it to occupy various niches within host-associated habitats. ↵↵The ability to grow in diverse oxygen conditions may facilitate its survival in different host tissues, where oxygen availability can vary. Its Gram-negative classification suggests the presence of a distinctive outer membrane, which may play a role in its interactions with the host immune system and influence its adaptability to the host environment. ↵↵Understanding the specific traits of E. coli strain FWSEC0515 contributes to the broader knowledge of microbial diversity and adaptability within host-associated ecosystems. Given its facultative anaerobic nature and association with hosts, this strain may play a role in complex microbial communities, potentially influencing host health and microbiome dynamics. Further research could elucidate the ecological interactions and functional contributions of FWSEC0515 within these contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRRP00000000.1 Bac0020034 Escherichia coli strain FWSEC0517 "Escherichia coli strain FWSEC0517 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli FWSEC0517 has an optimal growth temperature of 37.0°C, which aligns with the physiological temperature of the human body, suggesting a possible association with warm-blooded hosts.↵↵The habitat of E. coli FWSEC0517 is host-associated, implying that it may play a role in the microbiota of its host, contributing to various metabolic processes. While the specific interactions of this strain with its host are not detailed, it is well-documented that E. coli strains can participate in nutrient absorption and may influence host immunity.↵↵The existence of E. coli FWSEC0517 in single or paired arrangements could signify a strategy for effective nutrient acquisition or biofilm formation, potentially enhancing its survival in host environments. Given its facultative anaerobic nature, this strain may also adapt to fluctuating oxygen levels within the host, allowing it to occupy diverse ecological niches. The adaptability of E. coli FWSEC0517 to different oxygen conditions and its rod shape may facilitate its colonization and persistence in the host's gastrointestinal tract, where it likely contributes to the complex ecosystem of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRRR00000000.1 Bac0020035 Escherichia coli strain FWSEC0521 "Escherichia coli strain FWSEC0521 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the temperature of the mammalian host environments where it is commonly found. E. coli FWSEC0521 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, which reflects its adaptability to various microenvironments within host-associated habitats.↵↵The unique combination of traits exhibited by E. coli FWSEC0521 suggests it may play a versatile role in its host's microbiome, potentially contributing to nutrient assimilation or influencing metabolic processes. Its adaptation to host-associated environments, alongside its facultative anaerobic nature, may enable this strain to occupy ecological niches that vary significantly in oxygen availability, thus enhancing its ecological resilience. Further studies could elucidate the specific interactions and functional roles of this strain within the host-associated microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRRT00000000.1 Bac0020036 Escherichia coli strain FWSEC0526 "Escherichia coli strain FWSEC0526 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0 °C, which aligns with the physiological temperature of many mammalian hosts. E. coli FWSEC0526 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, a trait that enhances its adaptability within various host-associated habitats.↵↵The host-associated nature of E. coli FWSEC0526 suggests that it may play a role in the complex microbiota of its host, contributing to metabolic processes or influencing host health. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer and an outer membrane, which may provide advantages in terms of resistance to certain antibiotics and environmental stresses. The arrangement of cells in pairs or singles reflects a potential for diverse interactions with its environment and other microbial species.↵↵Understanding the traits of E. coli strain FWSEC0526 can provide insights into its ecological roles and potential applications in biotechnology or microbiome studies. Its facultative anaerobic metabolism allows it to occupy various niches within host organisms, where it may contribute to nutrient cycling, fermentation processes, or even host immune modulation. Thus, the study of this strain could reveal significant implications for both health and environmental microbiology." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRRV00000000.1 Bac0020037 Escherichia coli strain FWSEC0527 "Escherichia coli strain FWSEC0527 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which aligns with the physiological conditions found within the intestines of warm-blooded hosts. E. coli FWSEC0527 is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments. ↵↵As a host-associated microbe, E. coli FWSEC0527 likely plays a role in the complex microbial ecosystem of the gastrointestinal tract. While many strains of E. coli are known for their diverse functions, including those involved in nutrient metabolism and gut health, specific interactions and contributions of FWSEC0527 to its host environment remain to be elucidated. The strain's ability to thrive under varying oxygen conditions suggests it may be well-adapted to the fluctuating environments encountered within the gut, particularly in response to dietary changes or shifts in host physiology.↵↵This adaptability not only underscores the ecological versatility of E. coli but also highlights the potential for strain FWSEC0527 to contribute to the intricate balance of microbial communities in host-associated environments, possibly influencing host nutrition and immune responses. Further investigation into the specific roles of this strain within its ecological niche could provide valuable insights into the dynamics of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRRW00000000.1 Bac0020038 Escherichia coli strain FWSEC0537 "Escherichia coli strain FWSEC0537 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is characteristic of many E. coli strains. Its optimal growth temperature is approximately 37.0°C, reflecting its adaptation to host-associated habitats, where it likely plays a role in various biological processes.↵↵As a member of the Enterobacteriaceae family, E. coli FWSEC0537 is commonly found in the intestinal tracts of warm-blooded organisms, suggesting a potential symbiotic relationship with its host. The ability to grow in diverse oxygen conditions may provide it with a competitive advantage in the dynamic environments of the gastrointestinal tract. Furthermore, the strain's cell arrangement in pairs or singles may influence its interactions with other microbial species and the host's immune system.↵↵This strain's adaptation to a host-associated habitat emphasizes the importance of studying its role in microbial ecosystems, particularly in understanding how it may contribute to gut health or the microbial balance within its niche. Such insights can be critical for comprehending the broader implications of E. coli strains in microbiological research and their potential impacts on host organisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSD00000000.1 Bac0020039 Escherichia coli strain FWSEC0542 "Escherichia coli strain FWSEC0542 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. Optimal growth occurs at 37.0°C, which aligns with the physiological temperature of the mammalian host, suggesting that this strain is well adapted to a host-associated habitat.↵↵E. coli strains are widely recognized for their versatility in metabolic pathways, allowing them to exploit a variety of environmental niches, particularly within the gastrointestinal tract of warm-blooded animals. The facultative anaerobic nature of FWSEC0542 enables it to utilize oxygen when available, while also being capable of anaerobic respiration or fermentation, facilitating its survival in fluctuating oxygen conditions often encountered in the host environment.↵↵Given its habitat and growth characteristics, E. coli strain FWSEC0542 may play a role in microbial interactions within the host, potentially influencing the local microbiota composition and contributing to the overall health of the host organism. Its adaptability to different oxygen levels and temperature preferences underscores the ecological significance of E. coli in maintaining microbial diversity and functionality in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSI00000000.1 Bac0020040 Escherichia coli strain FWSEC0543 "Escherichia coli strain FWSEC0543 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, indicating a preference for mammalian host environments, which aligns with its classification as host-associated. E. coli FWSEC0543 demonstrates facultative anaerobic metabolism, allowing it to adapt to varying oxygen conditions within its ecological niches.↵↵As a member of the Enterobacteriaceae family, E. coli is widely recognized for its metabolic versatility, enabling it to utilize diverse substrates in different environments. The host-associated habitat suggests that this strain may play a role in the microbiota of its host, potentially contributing to nutrient cycling and maintaining gut homeostasis. The ability to exist both in pairs and as single cells may also facilitate its survival and interaction within complex microbial communities, allowing for effective colonization and competition.↵↵Further studies on E. coli strain FWSEC0543 could provide insights into its specific roles in host health and disease, as well as its interactions with other microbial inhabitants in the gastrointestinal tract. Understanding the functional dynamics of this strain within its ecological context may reveal broader implications for gut microbiome research and the management of microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSJ00000000.1 Bac0020041 Escherichia coli strain FWSEC0544 "Escherichia coli strain FWSEC0544 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives at an optimal temperature of 37.0°C, which corresponds to the normal body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. E. coli FWSEC0544 is classified as a facultative anaerobe, which allows it to grow in both aerobic and anaerobic environments, further enhancing its survival and metabolic versatility within various host-associated niches.↵↵This strain's ability to exist in pairs or singly may facilitate its interactions with host tissues and other microbial communities. The facultative anaerobic nature suggests a metabolic flexibility that could allow E. coli FWSEC0544 to exploit a range of substrates for energy, adapting to fluctuating oxygen conditions within the host. Such characteristics may contribute to its potential role in the gut microbiota, where it could participate in nutrient cycling and maintaining intestinal homeostasis. Understanding the specific traits of E. coli FWSEC0544 can provide insights into its ecological interactions and potential contributions to the microbial dynamics in host environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSK00000000.1 Bac0020042 Escherichia coli strain FWSEC0550 "Escherichia coli strain FWSEC0550 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, aligning with the average body temperature of warm-blooded hosts, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, FWSEC0550 possesses the metabolic flexibility to grow in both aerobic and anaerobic conditions, suggesting its ability to exploit various microenvironments within the host. ↵↵The combination of these traits underscores FWSEC0550's potential ecological roles in the gastrointestinal tract, where such conditions of temperature and oxygen availability can vary significantly. The ability to exist in pairs or as singles may facilitate its colonization strategies and interactions with other microbial communities in the host. Understanding the specific behaviors and interactions of FWSEC0550 within its host environment could provide insights into its ecological significance and its contributions to the complex microbiome dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSL00000000.1 Bac0020043 Escherichia coli strain FWSEC0554 "Escherichia coli strain FWSEC0554 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, FWSEC0554 can adapt to varying oxygen availability, allowing it to survive in diverse environments that may be oxygen-rich or oxygen-poor.↵↵The association of E. coli FWSEC0554 with host organisms suggests a potential role in the microbiota of its host, contributing to various metabolic processes. The ability to grow in both aerobic and anaerobic conditions may enhance its survival in fluctuating environments, particularly within the gastrointestinal tract where oxygen levels can vary significantly. This adaptability may also provide insights into its metabolic versatility, potentially influencing nutrient cycling and microbial interactions within the host ecosystem.↵↵Overall, E. coli strain FWSEC0554 exemplifies the ecological versatility of enteric bacteria, reflecting their capacity to thrive in dynamic environments while maintaining interactions with host organisms. Such traits underscore the importance of studying specific strains to understand their roles within complex microbial communities and their potential impact on host health." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSN00000000.1 Bac0020044 Escherichia coli strain FWSEC0595 "Escherichia coli strain FWSEC0595 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, a condition commonly found in the warm-blooded hosts it associates with. As a facultative anaerobe, FWSEC0595 has the metabolic versatility to survive in both aerobic and anaerobic environments, enabling it to adapt to varying oxygen levels that may be encountered within the host.↵↵The host-associated habitat of E. coli FWSEC0595 suggests that it plays a role in the complex microbiota of the gastrointestinal tract, where it may engage in various interactions with host cells and other microbial species. Such interactions can influence nutrient absorption and contribute to the maintenance of gut homeostasis. The ability of this strain to exist in singles and pairs may facilitate its colonization and persistence in the host environment, allowing for effective resource utilization and potential symbiotic relationships.↵↵Overall, Escherichia coli strain FWSEC0595 exemplifies the adaptability and ecological significance of E. coli within host-associated environments, highlighting the importance of microbial diversity in maintaining health and balance within the microbiome." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSY00000000.1 Bac0020045 Escherichia coli strain FWSEC0597 "Escherichia coli strain FWSEC0597 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which closely aligns with the physiological temperature of its host-associated habitat. As a facultative anaerobe, FWSEC0597 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within its host's biological systems.↵↵The host-associated habitat of E. coli FWSEC0597 suggests a potential symbiotic role, as many E. coli strains are known to inhabit the intestines of warm-blooded organisms, contributing to digestion and nutrient absorption. Furthermore, the capacity to thrive in diverse oxygen levels may enable this strain to exploit various niches within the host, possibly leading to a dynamic interaction with the host's microbiome.↵↵Overall, the traits of E. coli strain FWSEC0597 highlight its adaptability and potential importance in the ecological balance within its host environment, emphasizing the intricate relationships that exist between microbial species and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRSZ00000000.1 Bac0020046 Escherichia coli strain FWSEC0611 "Escherichia coli strain FWSEC0611 is a rod-shaped, Gram-negative bacterium that exhibits a versatile growth pattern as it can be found in singles and pairs. This strain thrives optimally at 37.0°C, which aligns with the typical human body temperature, suggesting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0611 can grow in both aerobic and anaerobic environments, allowing it to exploit a range of ecological niches within its host.↵↵The facultative anaerobic nature of this strain indicates its metabolic flexibility, enabling it to utilize various fermentation processes in the absence of oxygen while still being capable of aerobic respiration when oxygen is available. This adaptability may contribute to its survival and proliferation in the diverse microenvironments found within host organisms.↵↵Overall, E. coli strain FWSEC0611 exemplifies the ecological versatility of Escherichia coli, which is known for its role in various host-associated systems. Its ability to thrive across different oxygen conditions and temperatures highlights its importance in microbial ecology, particularly in understanding host-microbe interactions and the dynamics of gut microbiota." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRTF00000000.1 Bac0020047 Escherichia coli strain FWSEC0614 "Escherichia coli strain FWSEC0614 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which reflects its adaptation to host-associated environments, likely within warm-blooded organisms. As a facultative anaerobe, FWSEC0614 has the metabolic flexibility to grow in both the presence and absence of oxygen, allowing it to colonize various niches within a host organism where oxygen levels may fluctuate. ↵↵The ability to thrive in host-associated habitats suggests that E. coli strain FWSEC0614 may play a role in the complex microbial communities found in the gastrointestinal tract of its host, potentially contributing to nutrient metabolism or influencing host immune responses. The specific ecological interactions and functional roles of this strain within its host environment remain to be fully elucidated, but its physiological traits indicate a capacity for survival and adaptation to diverse conditions encountered in host-associated ecosystems." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRTH00000000.1 Bac0020048 Escherichia coli strain FWSEC0620 "Escherichia coli strain FWSEC0620 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments, which is a characteristic feature of many E. coli strains. It has an optimal growth temperature of 37.0°C, aligning with the physiological conditions of the mammalian host, where it is commonly found.↵↵The habitat of E. coli strain FWSEC0620 is host-associated, suggesting that it may play a role in the microbiota of its host organism, potentially contributing to various metabolic processes. The adaptability of this strain to different oxygen conditions may enhance its survival in diverse niches within the host, facilitating its persistence and potential interactions with the host immune system.↵↵Understanding the specific ecological role of E. coli strain FWSEC0620 within its host could provide insights into the microbial dynamics at play, particularly how this strain may influence host health or contribute to the stability of the microbiome. Further investigations into its metabolic capabilities and interactions within the host environment are warranted to elucidate its biological significance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRTK00000000.1 Bac0020049 Escherichia coli strain FWSEC0623 "Escherichia coli strain FWSEC0623 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement in pairs and singles. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the body temperature of warm-blooded hosts, reflecting its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli FWSEC0623 can utilize oxygen for respiration when available but is also capable of anaerobic metabolism, allowing it to inhabit diverse environments within host organisms, where oxygen levels may vary.↵↵The strain's rod shape and ability to form pairs and singles may influence its motility and colonization strategies within the host, contributing to its fitness in a competitive microbial environment. The facultative anaerobic nature of E. coli FWSEC0623 suggests it can adapt to fluctuating oxygen levels, which is a common scenario in various host-associated niches, including the gastrointestinal tract.↵↵This adaptability underscores the ecological versatility of E. coli strains in general, making them key players in microbial ecosystems. Furthermore, the capability of E. coli FWSEC0623 to thrive in host-associated habitats may also imply a role in nutrient cycling and interaction with the host immune system, providing insights into the complex relationships between microorganisms and their hosts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRTN00000000.1 Bac0020050 Escherichia coli strain FWSEC0624 "Escherichia coli strain FWSEC0624 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at a temperature of 37.0°C, which corresponds to the physiological temperature of warm-blooded hosts. As a facultative anaerobe, E. coli FWSEC0624 can adapt to varying oxygen availability, allowing it to flourish in diverse environments, particularly within host-associated habitats. ↵↵The ability of E. coli FWSEC0624 to survive in both aerobic and anaerobic conditions suggests a versatile metabolic capacity, enabling it to utilize a range of substrates for energy production. This adaptability may play a crucial role in its survival and functionality within the host's microbiome, where it may participate in various metabolic processes and interactions with the host's immune system.↵↵Overall, the characteristics of E. coli strain FWSEC0624 highlight its potential significance within host-associated environments, where it may contribute to the complex dynamics of microbial communities and influence host health through its metabolic activities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRTO00000000.1 Bac0020051 Escherichia coli strain FWSEC0627 "Escherichia coli strain FWSEC0627 is a Gram-negative, rod-shaped bacterium typically found in pairs or as single cells. This strain thrives optimally at 37.0 °C, a temperature that coincides with the physiological conditions of its host-associated habitat. As a facultative anaerobe, FWSEC0627 possesses the metabolic versatility to grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within the host. ↵↵The ability of E. coli strain FWSEC0627 to inhabit the gastrointestinal tract of warm-blooded organisms underscores its potential role in the microbial ecosystem of the host. This versatility in oxygen utilization and temperature adaptation may contribute to its survival and function in the dynamic environment of the intestine. Understanding the specific interactions of FWSEC0627 within its host could provide insights into the broader ecological roles of E. coli strains, particularly regarding their contributions to gut health and microbial balance." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRTR00000000.1 Bac0020052 Lautropia dentalis strain KCOM 2505 KCOM2505_17 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Lautropia Lautropia dentalis 2490857 RRUE00000000.1 Bac0020053 Escherichia coli strain UMB6454 "Escherichia coli strain UMB6454 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of its common host environments. As a facultative anaerobe, E. coli UMB6454 can adapt to both aerobic and anaerobic conditions, allowing it to occupy a diverse range of ecological niches within host-associated habitats.↵↵The ability to exist in pairs and singles suggests a potential for varied interactions with its host, which may influence its metabolic activities and ecological roles. The host-associated nature of this strain indicates that it may play a specific role in the microbiota of its host, contributing to nutrient cycling or influencing host health through various biochemical pathways.↵↵Insights into the adaptability of E. coli UMB6454 in fluctuating environments highlight its potential resilience and versatility in colonizing host organisms. Further investigation into this strain may reveal its specific contributions to the microbiome, as well as its interactions with other microbial communities present in the host. Understanding these dynamics could provide valuable information regarding microbial ecology and host relationships in health and disease contexts." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RRUU00000000.1 Bac0020054 Pseudoxanthomonas sp. SGD-10 1090 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas sp. SGD-10 2493089 RRYL00000000.1 Bac0020055 Pectobacterium polaris strain F109 KHDHEBDM_60 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium polaris 2042057 RRYS00000000.1 Bac0020056 Peribacillus simplex strain BE23 "Peribacillus simplex strain BE23 is a Gram-positive, rod-shaped bacterium predominantly found in warm arid soils. This microorganism exhibits an aerobic metabolism, requiring oxygen for its growth and energy production. The ability to thrive in such extreme environments suggests that P. simplex strain BE23 has likely evolved specific physiological adaptations enabling it to cope with high temperatures and low moisture levels typical of arid habitats. ↵↵The presence of P. simplex strain BE23 in warm arid soils may play a significant role in nutrient cycling within these ecosystems, potentially contributing to the degradation of organic matter and the mobilization of essential minerals. Understanding the ecological function of this strain could provide insights into the resilience and interactions of microbial communities in extreme environments, highlighting the importance of such organisms in maintaining soil health and fertility." Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus simplex positive Rod aerobic warm arid soils 1478 RRZF00000000.1 Bac0020057 Saccharopolyspora rhizosphaerae strain H219 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora rhizosphaerae 2492662 RSAA00000000.1 Bac0020058 Candidatus Viridilinea halotolerans Bacillati Chloroflexota Chloroflexia Chloroflexales Oscillochloridaceae Candidatus Viridilinea Candidatus Viridilinea halotolerans 2491704 RSAS00000000.1 Bac0020059 Streptococcus anginosus strain KHUD_S1 "Streptococcus anginosus strain KHUD_S1 is a Gram-positive, nonsporulating coccus that exhibits facultative anaerobic respiration, with an optimal growth temperature of 37.0°C. This strain is classified as a chemoheterotroph, indicating that it derives energy from organic compounds, which aligns with its prevalent habitat in the host gut. ↵↵As a member of the Streptococcus anginosus group, this strain may play a role in the complex microbiota of the gastrointestinal tract, where it can contribute to the fermentation processes and overall metabolic activity of the gut ecosystem. The facultative anaerobic nature of S. anginosus strain KHUD_S1 allows it to thrive in varying oxygen conditions, which is advantageous for survival in the dynamic environment of the gut, where oxygen levels can fluctuate.↵↵The presence of S. anginosus in the gut may have implications for interspecies interactions, including competition with other microbial populations and potential roles in maintaining gut health. Understanding the specific interactions and functions of this strain within the gut microbiome may provide insights into its contributions to host metabolism and overall gut homeostasis. Consequently, further research into this strain could elucidate its ecological roles and potential benefits or impacts on host health." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating Human 1328 RSCG00000000.1 Bac0020060 Chlorogloeopsis fritschii PCC 6912 Bacillati Cyanobacteriota Cyanophyceae Nostocales Chlorogloeopsidaceae Chlorogloeopsis Chlorogloeopsis fritschii 211165 RSCJ00000000.1 Bac0020061 Bifidobacterium animalis subsp. animalis strain 2022B "Bifidobacterium animalis subsp. animalis strain 2022B is a Gram-positive, non-sporulating rod-shaped bacterium that thrives optimally at a temperature of 39.0°C. This strain is classified as an anaerobe, indicating its growth occurs in environments devoid of oxygen. ↵↵B. animalis subsp. animalis is known to inhabit a variety of habitats, although specific ecological niches for strain 2022B are not detailed in the current data. The presence of this strain in diverse environments suggests a versatile metabolic capacity, which may enable it to adapt to varying substrates and conditions. ↵↵The anaerobic nature of B. animalis subsp. animalis strain 2022B implies an ecological role that may involve fermentation processes, potentially contributing to the microbiota of the gastrointestinal tract in various hosts. Its ability to thrive at elevated temperatures could also suggest a niche preference for warmer environments or a specific adaptation mechanism that allows it to outperform competitors in such settings. Further studies could elucidate the ecological significance of this strain, particularly in relation to its interactions with other microbial communities and its potential applications in probiotic formulations." Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis Positive Rod No 1 1 Anaerobe 39 Mesophilic Multiple Free living Nonsporulating 302912 RSDC00000000.1 Bac0020062 Streptococcus suis strain PP422 "Streptococcus suis strain PP422 is a Gram-positive coccus that typically arranges itself in chains, pairs, or singles, exhibiting its characteristic morphology. This strain thrives optimally at a temperature of 37.0 °C, which aligns with the physiological conditions of its specialized habitat. As a facultative anaerobe, S. suis strain PP422 can grow in both aerobic and anaerobic environments, allowing it to adapt to varying oxygen levels in its surroundings. ↵↵While specific ecological roles and pathogenic traits of S. suis strain PP422 are not detailed in the provided data, its ability to inhabit specialized niches suggests a potential for adaptation to particular host environments or ecological contexts. This adaptability may enhance its survival and proliferation in specific habitats, which could include animal hosts. Further investigation into its ecological interactions and potential roles within its habitat would be essential for understanding the broader implications of this strain in microbiological and veterinary contexts." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 RSDO00000000.1 Bac0020063 Streptococcus suis strain PP203 "Streptococcus suis strain PP203 is a Gram-positive coccus that typically forms chains, pairs, or exists as single cells. This strain thrives at an optimal temperature of 37.0 °C, suggesting a physiological adaptation to warm-blooded hosts or environments that mimic such conditions. As a facultative anaerobe, S. suis strain PP203 can grow in both aerobic and anaerobic conditions, which may confer an advantage in various habitats where oxygen availability fluctuates.↵↵The specialized habitat of S. suis strain PP203 indicates a narrow ecological niche, possibly associated with specific hosts or environments conducive to its growth and survival. While the precise ecological interactions of this strain remain to be elucidated, its facultative anaerobic metabolism suggests it may play a role in diverse microbial communities, potentially adapting to varying oxygen levels in its specialized habitat.↵↵Overall, the unique combination of its morphological characteristics, optimal growth conditions, and metabolic flexibility may position Streptococcus suis strain PP203 as a significant player in its ecological niche, influencing microbial dynamics and interactions within its environment." Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 RSDR00000000.1 Bac0020064 Salmonella enterica strain 169_17 "Salmonella enterica strain 169_17 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and ability to exist in both single and chain arrangements. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found within host organisms. As a chemoorganotroph, S. enterica strain 169_17 derives its energy from organic compounds, indicating its potential metabolic versatility in host-associated environments.↵↵The microaerophilic nature of this strain suggests a specialized adaptation to environments with lower levels of oxygen, which may be reflective of its ecological niche within the host. Understanding the growth characteristics and metabolic capabilities of S. enterica strain 169_17 can provide insights into its ecological role and survival strategies in host-associated habitats. This adaptation not only underscores the importance of environmental conditions in influencing microbial physiology but also highlights the potential for interactions with the host microbiome and immune system. Further exploration of these traits could elucidate the strain's contributions to microbial diversity and function in its specific ecological context." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RSEO00000000.1 Bac0020065 Burkholderia pseudomallei strain Bp9107 Bp9107_113 "Burkholderia pseudomallei strain Bp9107 (Bp9107_113) is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits strict aerobic growth. This strain, like its species, is characterized by its adaptability to various soil conditions, which is a notable trait of the Burkholderia genus. The ability to grow in aerobic conditions suggests that Bp9107 may play a role in nutrient cycling within its habitat, potentially influencing soil microbiomes through its metabolic activities.↵↵Given its aerobic nature, Bp9107 likely engages in processes such as decomposing organic matter or interacting with plant roots, which could foster symbiotic relationships or contribute to biogeochemical cycles. Understanding the specific ecological interactions of Bp9107 in terrestrial ecosystems may shed light on its role in maintaining soil health and stability. The insights derived from studying this strain could inform broader ecological studies concerning microbial contributions to terrestrial environments." Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 28450 RSFB00000000.1 Bac0020066 Pseudidiomarina gelatinasegens strain R04H25 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Pseudidiomarina Pseudidiomarina gelatinasegens 2487740 RSFE00000000.1 Bac0020067 Salmonella enterica strain CFSAN034428 "Salmonella enterica strain CFSAN034428 is a Gram-negative bacterium characterized by its spirilla shape and the formation of chains or singles. This strain is classified as a chemoorganotroph, indicating that it derives energy from organic compounds. It thrives optimally at a temperature of 37.0°C, which is consistent with the physiological conditions found in many host organisms, suggesting a potential adaptation to a host-associated habitat. ↵↵Additionally, Salmonella enterica strain CFSAN034428 exhibits a microaerophilic oxygen requirement, indicating that it prefers environments with lower levels of oxygen than are present in the atmosphere. This trait may influence its ecological niche, as it could be well-suited to colonizing specific environments within host organisms where oxygen levels are limited. ↵↵Overall, the traits of Salmonella enterica strain CFSAN034428 suggest it plays a role in complex interactions within host-associated ecosystems, potentially influencing host metabolism and microbial community dynamics. Understanding these traits can provide insights into the behavior and ecological significance of this strain in its natural habitat." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RSTU00000000.1 Bac0020068 Salmonella enterica strain CFSAN034452 "Salmonella enterica strain CFSAN034452 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and the tendency to form chains or exist as single cells. This strain is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds, which aligns with its habitat as a host-associated microbe. The optimal growth temperature for CFSAN034452 is around 37.0°C, which corresponds to the physiological temperature of many warm-blooded hosts. ↵↵The microaerophilic nature of this strain suggests that it thrives in environments where oxygen levels are reduced, which is often the case within the gastrointestinal tracts of animals. The formation of chains may facilitate its survival and colonization within such host-associated environments, potentially enhancing its ability to compete for nutrients and establish itself within the microbial community. ↵↵Given these traits, CFSAN034452 exemplifies the adaptations of certain Salmonella enterica strains to thrive in specific ecological niches, particularly those associated with animal hosts, where interactions with other microbial populations may influence its growth dynamics and ecological role. Understanding these characteristics can provide insights into the complex relationships between host-associated microbes and their environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RSTW00000000.1 Bac0020069 Salmonella enterica strain MOD1-Lipp-451 "Salmonella enterica strain MOD1-Lipp-451 is a Gram-negative microbe exhibiting a spirilla shape and capable of forming chains or existing as single cells. This strain thrives optimally at 37.0°C, which aligns with the typical body temperature of many host organisms, suggesting a strong association with host environments. As a chemoorganotroph, MOD1-Lipp-451 derives its energy from organic compounds, further supporting its adaptation to host-associated habitats where organic substrates are readily available.↵↵Additionally, this strain is microaerophilic, indicating that it requires a low concentration of oxygen for optimal growth. This oxygen requirement may reflect its ecological niche within host systems, where oxygen levels can be lower than atmospheric concentrations, allowing it to exploit specific microenvironments. The combination of its morphological characteristics, optimal growth temperature, and metabolic capabilities suggests that Salmonella enterica strain MOD1-Lipp-451 is well-adapted to persist in host-associated environments, potentially engaging in complex interactions with its host and surrounding microbiota. This adaptability highlights the potential for strain MOD1-Lipp-451 to play a role in the intricate dynamics of host-associated microbial communities." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RSTY00000000.1 Bac0020070 Salmonella enterica strain FDA95887-A "Salmonella enterica strain FDA95887-A is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to arrange in chains or singles. This strain demonstrates optimal growth at 37.0°C, a temperature that aligns with the typical physiological conditions of its host-associated habitat. As a chemoorganotroph, FDA95887-A utilizes organic compounds as its energy source, which is indicative of its adaptability to nutrient-rich environments, particularly within host organisms.↵↵The microaerophilic nature of this strain suggests it thrives in environments with reduced oxygen levels, which may be reflective of certain niches within the gastrointestinal tract of animals. This adaptation to lower oxygen concentrations could play a role in its survival and persistence within such host-associated habitats. Additionally, the chain formation observed in this strain could influence its interactions with the host microbiome and immune responses, potentially affecting its ecological dynamics.↵↵Overall, the unique combination of traits exhibited by Salmonella enterica strain FDA95887-A underscores its specialized adaptations to a microaerophilic, host-associated environment, which may offer insights into its metabolic capabilities and ecological roles within its niche." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RSUZ00000000.1 Bac0020071 Salmonella enterica strain FDA954241 "Salmonella enterica strain FDA954241 is a Gram-negative bacterium characterized by its spirilla shape and tendency to form chains or exist as single cells. This strain thrives optimally at 37.0°C, reflecting its adaptation to the warm-blooded hosts it commonly associates with. As a chemoorganotroph, it derives its energy from organic compounds, a trait that underscores its metabolic versatility in nutrient-rich environments. ↵↵The microaerophilic oxygen requirement of this strain suggests that it functions best in environments with limited oxygen availability, which may be indicative of its ecological niche within host-associated habitats. Such conditions are often found in the gastrointestinal tracts of various animals, where it can benefit from the nutrient-rich milieu while avoiding the toxic effects of high oxygen levels. ↵↵The unique combination of its morphological characteristics, optimal growth temperature, and metabolic capabilities positions Salmonella enterica strain FDA954241 as a microbe well-adapted to life within host organisms, potentially influencing the microbial community structure and dynamics in its specific ecological niche. Understanding these traits can provide insights into the broader ecological roles of Salmonella enterica strains in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RSVA00000000.1 Bac0020072 Listeria monocytogenes strain CFSAN060949 "Listeria monocytogenes strain CFSAN060949 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains or as singles. This strain is nonsporulating and exhibits facultative anaerobic characteristics, allowing it to thrive in both aerobic and anaerobic environments. Its optimal growth temperature is around 30.0°C, which is indicative of its adaptability to various habitats, including those that might be less than ideal for other microorganisms.↵↵As a chemoorganotroph, Listeria monocytogenes strain CFSAN060949 derives its energy from organic compounds, enabling it to exploit a wide range of ecological niches. The bacterium's ability to grow in diverse environments may contribute to its resilience and versatility in various ecological contexts. This trait highlights the potential for Listeria monocytogenes to occupy multiple habitats, possibly including soil, water, and decaying vegetation, where organic matter is abundant.↵↵Overall, the adaptability of strain CFSAN060949, along with its metabolic capabilities, suggests it plays a role in nutrient cycling within its environments, although the specific ecological implications of this strain warrant further investigation." Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes Positive Rod No 1 1 Facultative anaerobe 30 Chemoorganotroph Mesophilic Multiple Free living Chains - Singles Nonsporulating Human 1639 RSVN00000000.1 Bac0020073 Escherichia coli strain 389639 SAMN09371778-rid9461513.guided.161 "Escherichia coli strain 389639 (SAMN09371778-rid9461513.guided.161) is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain thrives optimally at 37°C, which corresponds to the average body temperature of warm-blooded hosts, suggesting a close association with host environments. As a facultative anaerobe, E. coli strain 389639 is capable of growth in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within its host-associated habitats.↵↵The ability of this strain to inhabit host environments underscores its potential role in the microbiota of various organisms, where it may contribute to metabolic processes or nutrient cycling. Furthermore, the adaptability afforded by its facultative anaerobic metabolism enables it to exploit diverse ecological niches within its host, potentially influencing the microbial community structure. Understanding the specific interactions and functions of E. coli strain 389639 within its host could provide valuable insights into its ecological significance in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RTHS00000000.2 Bac0020074 Shigella flexneri strain 551537 "Shigella flexneri strain 551537 is a Gram-negative, rod-shaped bacterium that typically appears in pairs or as single cells. This strain does not form spores and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It is a chemoorganotroph, meaning it derives its energy from organic compounds, which is indicative of its reliance on host-associated habitats for nutrients. The optimal growth temperature for S. flexneri strain 551537 is 37.0°C, aligning with the physiological conditions of the mammalian gut, where it is commonly found.↵↵As a member of the genus Shigella, this strain is part of a group of bacteria known for their association with human hosts, particularly in the context of gastrointestinal infections. While the specific pathogenic traits of strain 551537 are not detailed in the provided data, its habitat and growth characteristics suggest a potential role in host-microbe interactions within the intestinal microbiome. Understanding the environmental preferences and metabolic capabilities of S. flexneri strain 551537 may provide insights into its ecological niche and potential interactions with other gut microbiota, which could influence overall gut health and disease dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 623 RTMN00000000.1 Bac0020075 Salmonella enterica strain FDA1072810-C001-001 "Salmonella enterica strain FDA1072810-C001-001 is a Gram-negative bacterium characterized by its spirilla shape and ability to exist in both single cells and chains. This strain is a chemoorganotroph, indicating that it derives its energy from organic compounds, and it thrives optimally at a temperature of 37.0°C, which aligns with the physiological temperature of many host organisms. Furthermore, it is classified as microaerophilic, suggesting that it requires lower levels of oxygen for growth than are typically found in the atmosphere.↵↵The habitat of Salmonella enterica strain FDA1072810-C001-001 is host-associated, indicating a potential relationship with living hosts, which may influence its survival and propagation. The microaerophilic nature of this strain may also reflect adaptations to specific niches within host environments where oxygen levels are lower than atmospheric concentrations, such as the gastrointestinal tracts of various animals.↵↵Understanding the specific traits of this strain may provide insights into its ecological roles and interactions within host environments, particularly regarding its energy acquisition strategies and its growth conditions. Such adaptations may be significant for understanding the microbe's survival mechanisms and its potential impact on host health and microbial community dynamics." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 RTRY00000000.1 Bac0020076 Escherichia coli strain 593596 SAMN10057753-rid9463433.guided.151 "Escherichia coli strain 593596 SAMN10057753-rid9463433.guided.151 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. E. coli is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic environments, a trait that enhances its adaptability within various biological contexts.↵↵The host-associated habitat of this strain suggests a potential role in the microbial communities of the gastrointestinal tract, where it may contribute to nutrient absorption and metabolic processes. The preference for a temperature close to that of warm-blooded hosts further supports its adaptation to life within a host organism.↵↵E. coli strains are known for their metabolic versatility, which allows them to utilize a range of substrates and survive in diverse environmental conditions. This strain's combination of morphological and physiological traits may facilitate its interaction with other microbial species in the gut microbiome, contributing to complex ecological dynamics that influence host health. Understanding the specific traits of strain 593596 could provide insights into its functional roles in host-associated environments, particularly concerning nutrient cycling and microbial community interactions." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RTVT00000000.2 Bac0020077 Escherichia coli strain 341252 SAMN09457932-rid9462723.guided.102 "Escherichia coli strain 341252 (SAMN09457932-rid9462723.guided.102) is a Gram-negative, rod-shaped bacterium that typically exists in single cells or pairs. Preferring a temperature of approximately 37.0°C, this strain is well-suited to inhabit host-associated environments, indicating a potential relationship with a living host. As a facultative anaerobe, E. coli strain 341252 has the metabolic versatility to thrive in both aerobic and anaerobic conditions, allowing it to adapt to varying oxygen levels within its ecological niche.↵↵The ability of this strain to exist in host-associated habitats suggests it may play a role in the complex microbial communities of its host, potentially contributing to various biological processes such as nutrient metabolism or immune modulation. Additionally, the rod shape and specific arrangement in singles and pairs may facilitate its movement and colonization within host tissues, enhancing its adaptability to different microenvironments. Understanding these traits provides valuable insight into the ecological roles that E. coli strains, including 341252, may fulfill within their respective habitats. Further exploration of this strain's interactions with its host and other microbial species could illuminate its functional significance in host-associated microbiomes." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RUYU00000000.2 Bac0020078 Shigella dysenteriae strain 561031 "Shigella dysenteriae strain 561031 is a Gram-negative, rod-shaped bacterium that typically occurs in pairs or as single cells. This strain thrives optimally at 37.0°C, reflecting its adaptation to host-associated environments where it likely encounters temperatures similar to those in the human body. As a chemoorganotroph, S. dysenteriae strain 561031 utilizes organic compounds as energy sources, which is consistent with its habitat and lifestyle as a facultative anaerobe.↵↵The facultative anaerobic nature of this strain allows it to survive in both oxygen-rich and oxygen-poor environments, which may facilitate its persistence within various tissues of a host organism. This adaptability is crucial for survival and colonization in the gastrointestinal tract, where it can encounter fluctuating conditions depending on the host's physiological state.↵↵Given its specific growth requirements and habitat association, S. dysenteriae strain 561031 may play a role in the intricate interactions between the microbial community of the gut and its host, potentially influencing nutrient absorption and immune responses. Understanding these traits can provide insights into its ecological role and adaptability in host-associated environments." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella dysenteriae Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 622 RVGV00000000.1 Bac0020079 Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203 "Escherichia coli strain 628109 (SAMN10334465-rid9467093.guided.203) is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli strain 628109 possesses the metabolic versatility to grow in both the presence and absence of oxygen, enabling it to adapt to varying conditions within its host environment.↵↵The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of many Enterobacteriaceae family members. The ability to form pairs and singles may facilitate specific interactions within microbial communities or during colonization of host tissues. Furthermore, the facultative anaerobic capability allows E. coli strain 628109 to occupy niches that may fluctuate in oxygen availability, potentially influencing its role in the microbiome dynamics and overall host health.↵↵This strain's association with host environments suggests a potential for interactions with host immune responses and microbiome composition, which may provide insights into its ecological roles in maintaining host homeostasis or modulating gut health. Understanding the traits of E. coli strain 628109 may contribute to broader research on the functional diversity and adaptability of gut-associated microorganisms." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RVJZ00000000.2 Bac0020080 Escherichia coli strain PNUSAE018269 "Escherichia coli strain PNUSAE018269 is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at 37.0°C, which aligns with the physiological temperature of many host organisms. Notably, E. coli strain PNUSAE018269 is classified as a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions, thereby enhancing its adaptability to varying environmental oxygen levels.↵↵The habitat of this strain is characterized as host-associated, indicating a potential symbiotic or commensal relationship with its host. Such associations are common among E. coli strains, which can be part of the normal gut flora in many organisms, contributing to various metabolic processes. The capacity for facultative anaerobiosis and the ability to thrive in host-associated environments suggest that E. coli strain PNUSAE018269 may play a significant role in the microbiome dynamics of its host, possibly influencing nutrient absorption and gut health.↵↵Understanding the specific characteristics of E. coli strain PNUSAE018269 may provide insights into its functional roles within host-associated ecosystems, particularly regarding its interactions with other microbial community members and its contributions to the overall health of the host organism." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RVQE00000000.2 Bac0020081 Escherichia coli strain PNUSAE018855 "Escherichia coli strain PNUSAE018855 is a Gram-negative, rod-shaped bacterium that typically exists as single cells or in pairs. Optimally thriving at 37.0°C, this strain is well-adapted to host-associated environments, where it can exploit various ecological niches within its host. As a facultative anaerobe, E. coli strain PNUSAE018855 possesses the metabolic versatility to grow in both the presence and absence of oxygen, allowing it to survive in diverse conditions and contributing to its adaptability within host habitats.↵↵This strain's adaptation to a host-associated lifestyle highlights its potential role in intricate microbial communities, where it may interact with other microorganisms and the host's immune system. Understanding the specific interactions of E. coli strain PNUSAE018855 in its ecological niche can provide insights into the dynamics of gut microbiota and the overall health of the host organism. Further research into this strain's specific metabolic pathways and interactions could elucidate its potential contributions to the host's physiology and its role in maintaining microbial homeostasis." Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 RVTH00000000.2 Bac0020082 Salmonella enterica subsp. enterica serovar Kidderminster strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2564616 RVVJ00000000.1 Bac0020083 Enterobacter huaxiensis strain WCHEHu045002 32 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter huaxiensis 2494702 RWHU00000000.1 Bac0020084 Wolbachia endosymbiont of Aedes albopictus Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Anaplasmataceae Wolbachia Wolbachia endosymbiont of Aedes albopictus 167957 RWIK00000000.1 Bac0020085 Hymenobacter metallilatus strain 9PBR-2 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter metallilatus 2493666 RWIS00000000.1 Bac0020086 Hymenobacter rigui strain KCTC 12533 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter rigui 334424 RWIT00000000.1 Bac0020087 Bacillus sp. HMF5848 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus salinus 2495421 RWIV00000000.1 Bac0020088 Chryseobacterium lacus strain XH07 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium lacus 2058346 RWJG00000000.1 Bac0020089 Sphingorhabdus wooponensis strain 03SU3-P J_8 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Sphingorhabdus Sphingorhabdus wooponensis 940136 RWJI00000000.1 Bac0020090 Xanthomonas citri pv. eucalyptorum strain LPF 602 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas citri 2497685 RWJW00000000.1 Bac0020091 Klebsiella pneumoniae subsp. pneumoniae strain R1786 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 RWYL00000000.1 Bac0020092 Variovorax sp. 679 48 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax sp. 679 2496119 RXFS00000000.1 Bac0020093 Variovorax guangxiensis strain DSM 27352 42 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax guangxiensis 1775474 RXFT00000000.1 Bac0020094 Lactobacillus xujianguonis strain HT111-2 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus xujianguonis 2495899 RXIA00000000.1 Bac0020095 Ancylobacter aquaticus strain UV5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Ancylobacter Ancylobacter aquaticus 100 RXIO00000000.1 Bac0020096 Pseudonocardiaceae bacterium Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardiaceae bacterium 1873463 RXJL00000000.1 Bac0020097 Mycolicibacterium sp. Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sp. 2320850 RXJU00000000.1 Bac0020098 Alloscardovia theropitheci strain GLDI4/2 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Alloscardovia Alloscardovia theropitheci 2496842 RXLP00000000.1 Bac0020099 Mycobacteroides franklinii strain DSM 45524 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides franklinii 948102 RXLR00000000.1 Bac0020100 Halomonas nitroreducens strain 11S Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas nitroreducens Gram-negative rod non-motile facultative aerobe/anaerobe 25 mesophilic non-spore-forming 447425 RXNS00000000.1 Bac0020101 Robertmurraya yapensis strain XXST-01 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus yapensis 2492960 RXNT00000000.1 Bac0020102 Shewanella canadensis strain HAW-EB2 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella canadensis Gram-negative rod aerobic 5 psychrophilic non-spore-forming 271096 RXNU00000000.1 Bac0020103 Shewanella atlantica strain HAW-EB5 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella atlantica Gram-negative rod aerobic 5 psychrophilic non-spore-forming 271099 RXNV00000000.1 Bac0020104 Arcticibacter tournemirensis strain R1 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Arcticibacter Arcticibacter tournemirensis 699437 RXOC00000000.1 Bac0020105 Hymenobacter gummosus strain KCTC 52166 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter gummosus 1776032 RXOF00000000.1 Bac0020106 Croceicoccus ponticola strain GM-16 17 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Croceicoccus Croceicoccus ponticola 2217664 RXOL00000000.1 Bac0020107 Deinococcus radiophilus strain ATCC 27603 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus 32062 RXPE00000000.1 Bac0020108 Pseudomonas aeruginosa strain MRSN6241 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 RXTL00000000.1 Bac0020109 Staphylococcus hyicus strain CCUG 6509 CCUG6509_c85 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus hyicus Cocci 1284 RXWU00000000.1 Bac0020110 Staphylococcus piscifermentans strain DSM 7373 DSM7373_c137 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus piscifermentans 70258 RXXA00000000.1 Bac0020111 Pseudomonas sp. C 49-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. C 49-2 2496849 RXYG00000000.1 Bac0020112 Acinetobacter baumannii strain AM107 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 RXYO00000000.1 Bac0020113 Vibrio aquaticus strain BEI207 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio aquaticus 2496559 RXZH00000000.1 Bac0020114 Flavobacterium sp. GSN2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. GSN2 2497480 RYDF00000000.1 Bac0020115 Flavobacterium sp. RSP49 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. RSP49 2497487 RYDN00000000.1 Bac0020116 Candidimonas sp. SYP-B2681 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Candidimonas Candidimonas sp. SYP-B2681 2497686 RYDV00000000.1 Bac0020117 Hansschlegelia zhihuaiae strain S 113 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylopilaceae Hansschlegelia Hansschlegelia zhihuaiae Gram-negative sphere aerobic 29 mesophilic non-spore-forming 405005 RYFI00000000.1 Bac0020118 Bifidobacterium pseudolongum subsp. globosum strain 2001B Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 1690 RYUY00000000.1 Bac0020119 Bifidobacterium pseudolongum subsp. globosum strain 1791B Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 1690 RYVB00000000.1 Bac0020120 Lysinibacillus antri strain SYSU K30002 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus antri 2498145 RYYR00000000.1 Bac0020121 Prevotella koreensis strain KCOM 3155 KCOM3155_2 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella koreensis 2490854 RYYU00000000.1 Bac0020122 Dyella choica strain 4 M-K27 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella choica 1927959 RYYV00000000.1 Bac0020123 Tautonia sociabilis strain GM2012 Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Tautonia Tautonia sociabilis 2080755 RYZH00000000.1 Bac0020124 Dyella dinghuensis strain DHOA06 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella dinghuensis 1920169 RYZR00000000.1 Bac0020125 Legionella sp. km772 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella sp. km772 2498111 RZGQ00000000.1 Bac0020126 Labedella endophytica strain EGI 6500705 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Labedella Labedella endophytica 1523160 RZGZ00000000.1 Bac0020127 Halogeometricum borinquense strain N11 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halogeometricum Halogeometricum borinquense 60847 RZHH00000000.1 Bac0020128 Cohnella sp. AR92 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella sp. AR92 648716 RZJR00000000.1 Bac0020129 Labedella populi strain 8H24J-4-2 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Labedella Labedella populi 2498850 RZNC00000000.1 Bac0020130 Paenibacillus anaericanus strain DSM 15890 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus anaericanus Gram-negative rod facultative aerobe/anaerobe 32 mesophilic spore-forming 170367 RZNY00000000.1 Bac0020131 Mesorhizobium sp. M2A.F.Ca.ET.017.03.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2A.F.Ca.ET.017.03.2.1 2496650 RZOG00000000.1 Bac0020132 Mesorhizobium sp. M4B.F.Ca.ET.019.03.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.019.03.1.1 2496651 RZOH00000000.1 Bac0020133 Mesorhizobium sp. M4A.F.Ca.ET.020.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4A.F.Ca.ET.020.02.1.1 2496652 RZOI00000000.1 Bac0020134 Mesorhizobium sp. M4A.F.Ca.ET.029.04.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4A.F.Ca.ET.029.04.2.1 2496657 RZON00000000.1 Bac0020135 Mesorhizobium sp. M4B.F.Ca.ET.089.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.089.01.1.1 2496662 RZOS00000000.1 Bac0020136 Mesorhizobium sp. M4A.F.Ca.ET.090.04.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4A.F.Ca.ET.090.04.2.1 2496663 RZOT00000000.1 Bac0020137 Mesorhizobium sp. M1C.F.Ca.ET.192.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.192.01.1.1 2496667 RZOX00000000.2 Bac0020138 Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 2496670 RZPA00000000.2 Bac0020139 Mesorhizobium sp. M7A.F.Ca.AU.002.03.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.AU.002.03.1.1 2496672 RZPC00000000.1 Bac0020140 Mesorhizobium sp. M7A.F.Ca.AU.002.06.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.AU.002.06.1.1 2496674 RZPE00000000.1 Bac0020141 Mesorhizobium sp. M7A.F.Ca.CA.002.04.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.04.1.1 2496681 RZPL00000000.1 Bac0020142 Mesorhizobium sp. M7A.F.Ca.CA.002.10.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.10.1.1 2496685 RZPP00000000.1 Bac0020143 Mesorhizobium sp. M7A.F.Ca.CA.001.08.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.08.2.1 2496692 RZPW00000000.1 Bac0020144 Mesorhizobium sp. M7A.F.Ca.CA.001.11.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.11.2.1 2496693 RZPX00000000.1 Bac0020145 Mesorhizobium sp. M7A.F.Ca.CA.004.05.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.004.05.1.1 2496694 RZPY00000000.1 Bac0020146 Mesorhizobium sp. M7A.F.Ca.US.006.04.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.006.04.2.1 2496696 RZQA00000000.1 Bac0020147 Mesorhizobium sp. M7A.F.Ca.US.002.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.002.01.1.1 2496700 RZQE00000000.1 Bac0020148 Mesorhizobium sp. M7D.F.Ca.US.004.03.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7D.F.Ca.US.004.03.1.1 2496702 RZQG00000000.1 Bac0020149 Mesorhizobium sp. M7A.F.Ca.US.001.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.001.02.1.1 2496703 RZQH00000000.1 Bac0020150 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 2496707 RZQL00000000.1 Bac0020151 Mesorhizobium sp. M7A.F.Ca.US.003.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.003.02.1.1 2496710 RZQO00000000.1 Bac0020152 Mesorhizobium sp. M7A.F.Ca.US.007.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.007.01.1.1 2496712 RZQQ00000000.1 Bac0020153 Mesorhizobium sp. M7A.F.Ca.CA.001.04.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.04.1.1 2496714 RZQS00000000.1 Bac0020154 Mesorhizobium sp. M7A.F.Ca.CA.001.04.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.04.2.1 2496715 RZQT00000000.1 Bac0020155 Mesorhizobium sp. M7A.F.Ca.US.001.04.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.001.04.1.1 2496726 RZRE00000000.1 Bac0020156 Mesorhizobium sp. M7A.F.Ca.US.001.04.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.001.04.2.1 2496727 RZRF00000000.1 Bac0020157 Mesorhizobium sp. M7A.F.Ca.CA.001.13.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.001.13.1.1 2496728 RZRG00000000.1 Bac0020158 Mesorhizobium sp. M7A.F.Ca.CA.004.08.2.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.004.08.2.1 2496731 RZRJ00000000.1 Bac0020159 Mesorhizobium sp. M7A.F.Ca.CA.002.09.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.CA.002.09.1.1 2496739 RZRR00000000.1 Bac0020160 Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1 2496741 RZRT00000000.1 Bac0020161 Mesorhizobium sp. M7A.F.Ca.US.010.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.010.02.1.1 2496743 RZRV00000000.1 Bac0020162 Mesorhizobium sp. M7A.F.Ca.US.014.04.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.F.Ca.US.014.04.1.1 2496744 RZRW00000000.1 Bac0020163 Mesorhizobium sp. M2A.F.Ca.ET.037.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2A.F.Ca.ET.037.01.1.1 2496748 RZSA00000000.1 Bac0020164 Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 2496751 RZSD00000000.1 Bac0020165 Mesorhizobium sp. M4B.F.Ca.ET.049.02.1.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.049.02.1.2 2496752 RZSE00000000.1 Bac0020166 Mesorhizobium sp. M1A.F.Ca.ET.072.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1A.F.Ca.ET.072.01.1.1 2496753 RZSF00000000.1 Bac0020167 Mesorhizobium sp. M4A.F.Ca.ET.050.02.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4A.F.Ca.ET.050.02.1.1 2496754 RZSG00000000.1 Bac0020168 Mesorhizobium sp. M5C.F.Ca.IN.020.29.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M5C.F.Ca.IN.020.29.1.1 2496770 RZSW00000000.1 Bac0020169 Mesorhizobium sp. M5C.F.Ca.IN.020.14.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M5C.F.Ca.IN.020.14.1.1 2496772 RZSY00000000.1 Bac0020170 Mesorhizobium sp. Primo-B Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. Primo-B 2496781 RZTH00000000.1 Bac0020171 Mesorhizobium sp. M7A.T.Ca.TU.009.01.3.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M7A.T.Ca.TU.009.01.3.2 2496790 RZTQ00000000.1 Bac0020172 Mesorhizobium sp. USDA-HM6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. USDA-HM6 2496794 RZTU00000000.1 Bac0020173 Mesorhizobium sp. M1A.T.Ca.IN.004.03.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1A.T.Ca.IN.004.03.1.1 2496795 RZTV00000000.1 Bac0020174 Rheinheimera sp. YQF-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera sediminis 2761104 RZUF00000000.1 Bac0020175 Rhodobacteraceae bacterium CCMM004 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium CCMM004 2499834 RZWH00000000.1 Bac0020176 Rhizobium sp. RMa-01 strain RMa01 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. RMa-01 2494255 RZXZ00000000.1 Bac0020177 Mucilaginibacter limnophilus strain YBJ-36 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter limnophilus 1932778 SACK00000000.1 Bac0020178 Novosphingobium umbonatum strain FSY-9 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium umbonatum 1908524 SACO00000000.1 Bac0020179 Methylobacterium oryzihabitans strain TER-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium oryzihabitans 2499852 SACP00000000.1 Bac0020180 Neptunomonas marina strain HPM-16 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptunomonas Neptunomonas marina 1815562 SACQ00000000.1 Bac0020181 Rubrivivax rivuli strain KYPY4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Rubrivivax Rubrivivax rivuli 1862385 SACR00000000.1 Bac0020182 Rheinheimera riviphila strain KYPC3 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera riviphila 1834037 SACS00000000.1 Bac0020183 Leucothrix sargassi strain C3212 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Leucothrix Leucothrix sargassi 2500160 SADG00000000.1 Bac0020184 Mesorhizobium sp. M1C.F.Ca.ET.212.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.212.01.1.1 2500527 SADQ00000000.2 Bac0020185 Mesorhizobium sp. M00.F.Ca.ET.217.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M00.F.Ca.ET.217.01.1.1 2500529 SADS00000000.2 Bac0020186 Sinirhodobacter populi strain 2D-5 74 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paenirhodobacter Paenirhodobacter populi 2306993 SAUW00000000.1 Bac0020187 Sinirhodobacter populi strain 07D10-4-3 121 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paenirhodobacter Paenirhodobacter populi 2306993 SAUY00000000.1 Bac0020188 Sinirhodobacter populi strain SK2B-1 91 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paenirhodobacter Paenirhodobacter populi 2306993 SAUZ00000000.1 Bac0020189 Neisseria gonorrhoeae strain gc-166 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVD00000000.1 Bac0020190 Neisseria gonorrhoeae strain gc-167 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVE00000000.1 Bac0020191 Neisseria gonorrhoeae strain gc-168 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVF00000000.1 Bac0020192 Neisseria gonorrhoeae strain gc-169 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVG00000000.1 Bac0020193 Neisseria gonorrhoeae strain gc-173 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVK00000000.1 Bac0020194 Neisseria gonorrhoeae strain gc-174 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVL00000000.1 Bac0020195 Neisseria gonorrhoeae strain gc-175 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVM00000000.1 Bac0020196 Neisseria gonorrhoeae strain gc-176 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVN00000000.1 Bac0020197 Neisseria gonorrhoeae strain gc-178 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVP00000000.1 Bac0020198 Neisseria gonorrhoeae strain gc-179 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVQ00000000.1 Bac0020199 Neisseria gonorrhoeae strain gc-182 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVT00000000.1 Bac0020200 Neisseria gonorrhoeae strain GC-184 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVU00000000.1 Bac0020201 Neisseria gonorrhoeae strain GC-185 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVV00000000.1 Bac0020202 Neisseria gonorrhoeae strain GC-186 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVW00000000.1 Bac0020203 Neisseria gonorrhoeae strain GC-188 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAVY00000000.1 Bac0020204 Neisseria gonorrhoeae strain GC-191 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWA00000000.1 Bac0020205 Neisseria gonorrhoeae strain GC-192 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWB00000000.1 Bac0020206 Neisseria gonorrhoeae strain GC-194 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWD00000000.1 Bac0020207 Neisseria gonorrhoeae strain GC-195 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWE00000000.1 Bac0020208 Neisseria gonorrhoeae strain GC-199 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWI00000000.1 Bac0020209 Neisseria gonorrhoeae strain GC-202 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWL00000000.1 Bac0020210 Neisseria gonorrhoeae strain GC-208 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWP00000000.1 Bac0020211 Neisseria gonorrhoeae strain GC-210 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWR00000000.1 Bac0020212 Neisseria gonorrhoeae strain GC-211 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWS00000000.1 Bac0020213 Neisseria gonorrhoeae strain GC-213 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWU00000000.1 Bac0020214 Neisseria gonorrhoeae strain GC-214 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWV00000000.1 Bac0020215 Neisseria gonorrhoeae strain GC-183 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWW00000000.1 Bac0020216 Neisseria gonorrhoeae strain GC-190 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SAWX00000000.1 Bac0020217 Ancylomarina salipaludis strain SHSM-M15 55 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Ancylomarina Ancylomarina salipaludis 2501299 SAXA00000000.1 Bac0020218 Lactococcus lactis strain C2D Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human; Non-pathogenic 1358 SAXH00000000.1 Bac0020219 Acinetobacter baumannii strain RCS1 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 SAXI00000000.1 Bac0020220 Acinetobacter baumannii strain RCS2 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 SAXJ00000000.1 Bac0020221 Pedobacter chitinilyticus strain CM134L-2 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter chitinilyticus 2233776 SAYW00000000.1 Bac0020222 Paenarthrobacter ureafaciens strain DSM 20126 10quiver Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter Paenarthrobacter ureafaciens 29 mesophilic 37931 SBHM00000000.1 Bac0020223 Endozoicomonadaceae bacterium GTF-13 GTF13_7 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Endozoicomonadaceae bacterium GTF-13 2506149 SBHR00000000.1 Bac0020224 Rhizobium leguminosarum strain CB1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 SBHT00000000.1 Bac0020225 Flavobacterium cerinum strain 1E403 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium cerinum 2502784 SBII00000000.1 Bac0020226 Bacillus sp. CBEL-1 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. CBEL-1 2502980 SBIM00000000.1 Bac0020227 Mucilaginibacter gilvus strain F01003 C379 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter gilvus 2305909 SBIW00000000.1 Bac0020228 Flavobacterium stagni strain WWJ-16 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium stagni 2506421 SBKN00000000.1 Bac0020229 Billgrantia azerbaijanica strain TBZ202 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia azerbaijanica 2599398 SBLD00000000.1 Bac0020230 Muribaculaceae bacterium Isolate-001 (NCI) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-001 (NCI) 2489214 SCEF00000000.1 Bac0020231 Muribaculaceae bacterium Isolate-002 (NCI) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-002 (NCI) 2489215 SCEG00000000.1 Bac0020232 Muribaculaceae bacterium Isolate-013 (NCI) Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculaceae bacterium Isolate-013 (NCI) 2489218 SCEJ00000000.1 Bac0020233 Escherichia coli strain EC117 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SCGK00000000.1 Bac0020234 Staphylococcus epidermidis strain A5 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 1282 SCHA00000000.1 Bac0020235 Staphylococcus capitis strain H8 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus capitis Positive Cocci Facultative anaerobe 29388 SCHC00000000.1 Bac0020236 Staphylococcus hominis strain A9 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus hominis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs 1290 SCHG00000000.1 Bac0020237 Enterococcus casseliflavus strain L5-B Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe intestines 37734 SCHU00000000.1 Bac0020238 Sphingomonas sp. UV9 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. UV9 1851410 SCIN00000000.1 Bac0020239 Escherichia coli strain 52_rectal Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SCIR00000000.1 Bac0020240 Escherichia coli strain 46_rectal Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SCIX00000000.1 Bac0020241 Escherichia coli strain 42_rectal Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SCJA00000000.1 Bac0020242 Hydrotalea sp. AMD Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Hydrotalea Hydrotalea sp. AMD microaerophile 2501297 SCKY00000000.1 Bac0020243 Glutamicibacter sp. HZAU Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Glutamicibacter Glutamicibacter sp. HZAU 2049891 SCKZ00000000.1 Bac0020244 Lactobacillus crispatus strain L49 flattened_line_1339 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus Positive Rod No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains Nonsporulating 47770 SCLX00000000.1 Bac0020245 Macrococcus brunensis strain CCM4811 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus brunensis aerobic 198483 SCWA00000000.1 Bac0020246 Macrococcus carouselicus strain ATCC 51828 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus carouselicus aerobic 69969 SCWD00000000.1 Bac0020247 Macrococcus hajekii strain CCM4809 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus hajekii aerobic 198482 SCWE00000000.1 Bac0020248 Macrococcus bovicus strain ATCC 51825 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus bovicus aerobic 69968 SCWF00000000.1 Bac0020249 Lelliottia nimipressuralis strain CCUG 25894 CCUG25894T_0000067 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Lelliottia Lelliottia nimipressuralis 69220 SDDX00000000.1 Bac0020250 Gelidibacter gilvus strain IC158 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Gelidibacter Gelidibacter gilvus Gram-negative rod motile aerobic 16 psychrotolerant 59602 SDDZ00000000.1 Bac0020251 Macrococcoides goetzii strain DPC7164 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides goetzii 1891097 SDGO00000000.1 Bac0020252 Vagococcus silagei strain 2B-2 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus silagei 2508885 SDGV00000000.1 Bac0020253 Citrobacter sp. AAK_AS5 Transcript_3749 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. AAK_AS5 2501298 SDHR00000000.1 Bac0020254 Stenotrophomonas sp. MA5 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. MA5 2508572 SDHV00000000.1 Bac0020255 Oleiharenicola lentus strain TWA-58 Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola lentus 2508720 SDHX00000000.1 Bac0020256 Streptomyces sp. TM32 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TM32 1652669 SDIG00000000.1 Bac0020257 Photobacterium damselae subsp. damselae strain JM-2017 EQ875_137 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 SDIH00000000.1 Bac0020258 Blautia faecicola strain KGMB01111 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia faecicola 2509240 SDKC00000000.1 Bac0020259 Geobacillus sp. PK12 Bacillati Bacillota Bacilli Caryophanales Anoxybacillaceae Geobacillus Geobacillus sp. PK12 2508525 SDKL00000000.1 Bac0020260 Nocardioides guangzhouensis strain 130 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides guangzhouensis 2497878 SDKM00000000.1 Bac0020261 Neisseria meningitidis strain N128_08 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKN00000000.1 Bac0020262 Neisseria meningitidis strain N101_10 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKO00000000.1 Bac0020263 Neisseria meningitidis strain N93_11 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKP00000000.1 Bac0020264 Neisseria meningitidis strain N473_12 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKQ00000000.1 Bac0020265 Neisseria meningitidis strain N43_16 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKU00000000.1 Bac0020266 Neisseria meningitidis strain N61_09 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKX00000000.1 Bac0020267 Neisseria meningitidis strain N207_18 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKY00000000.1 Bac0020268 Neisseria meningitidis strain N88_76 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDKZ00000000.1 Bac0020269 Ammoniphilus sp. CFH 90114 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Ammoniphilus Ammoniphilus sp. CFH 90114 2493665 SDLI00000000.1 Bac0020270 Mycobacterium paragordonae strain 29AIII Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paragordonae 1389713 SDLN00000000.1 Bac0020271 Chryseobacterium candidae strain JC507 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium candidae 1978493 SDLV00000000.1 Bac0020272 Streptococcus pyogenes strain SC21 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SDMI00000000.1 Bac0020273 Acinetobacter junii strain SB132 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 SDMM00000000.1 Bac0020274 Pelagerythrobacter rhizovicinus strain AY-3R Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Pelagerythrobacter Pelagerythrobacter rhizovicinus 2268576 SDPV00000000.1 Bac0020275 Neisseria meningitidis strain N36_04 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDPY00000000.1 Bac0020276 Neisseria meningitidis strain N133_06 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Pairs 487 SDPZ00000000.1 Bac0020277 Staphylococcus sp. SNAZ 59 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp. SNAZ 59 2509673 SDRD00000000.1 Bac0020278 Nocardioides glacieisoli strain HLT3-15 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides glacieisoli 1168730 SDWS00000000.1 Bac0020279 Nocardioides ganghwensis strain CGMCC 4.6875 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides ganghwensis Gram-positive rod non-motile aerobic 25 mesophilic non-spore-forming 252230 SDWU00000000.1 Bac0020280 Pengzhenrongella frigida strain HLT2-17 Bacillati Actinomycetota Actinomycetes Micrococcales Pengzhenrongella Pengzhenrongella frigida 1259133 SDWW00000000.1 Bac0020281 Actinomycetales bacterium Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetales bacterium 1911520 SDYB00000000.1 Bac0020282 bacterium isolate PMG_181 bacterium 1869227 SDZC00000000.1 Bac0020283 bacterium isolate PMG_196 bacterium 1869227 SDZD00000000.1 Bac0020284 Moraxellaceae bacterium Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxellaceae bacterium 1889775 SECL00000000.1 Bac0020285 Myxococcales bacterium Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcales bacterium 2026763 SECP00000000.1 Bac0020286 Dermacoccus sp. 147Ba 27 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Dermacoccus Dermacoccus sp. 147Ba 2510111 SEHL00000000.1 Bac0020287 Lentibacillus lipolyticus strain SSKP1-9 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lentibacillus Lentibacillus lipolyticus 2510307 SEIO00000000.1 Bac0020288 Yimella sp. RIT 621 strain RIT621 48 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Yimella Yimella sp. RIT 621 2510323 SEIP00000000.1 Bac0020289 Citrobacter werkmanii strain ICR003007 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter werkmanii Negative Rod Yes 1 Chemoheterotroph Mesophilic Nonsporulating 67827 SEJH00000000.1 Bac0020290 Citrobacter freundii strain ICR003203 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 SEJP00000000.1 Bac0020291 Escherichia coli strain GEN000185 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SEKD00000000.1 Bac0020292 Enterobacter cloacae strain GEN000188 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter cloacae Negative Rod No 2 Facultative anaerobe Mesophilic Multiple Free living 550 SEKG00000000.1 Bac0020293 Citrobacter freundii strain 071G10 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 SELK00000000.1 Bac0020294 Macrococcoides bohemicum strain dpc7215 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides bohemicum 1903056 SELR00000000.1 Bac0020295 Bradyrhizobium elkanii strain BR29 CONTING48 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium elkanii 29448 SEMA00000000.1 Bac0020296 Sporolactobacillus sp. THM7-4 Bacillati Bacillota Bacilli Caryophanales Sporolactobacillaceae Sporolactobacillus Sporolactobacillus sp. THM7-4 2511170 SEMD00000000.1 Bac0020297 Sphingobium cupriresistens strain CCTCC AB 2011146 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium cupriresistens 1132417 SEOO00000000.1 Bac0020298 Lactobacillus delbrueckii strain LDELB18P1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1584 SETJ00000000.1 Bac0020299 Klebsiella pneumoniae strain KP14CR KP14CR_74 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SETP00000000.1 Bac0020300 Klebsiella pneumoniae strain KP11CR KP11CR_603 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SETS00000000.1 Bac0020301 Klebsiella pneumoniae strain KP8CR Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SETT00000000.1 Bac0020302 Klebsiella pneumoniae strain KP4CR KP4CR_83 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SETX00000000.1 Bac0020303 Klebsiella pneumoniae strain KP3CR KP3CR_84 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SETY00000000.1 Bac0020304 Acinetobacter baumannii strain C1T1-1 5863_41 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 SEUG00000000.1 Bac0020305 Escherichia coli O25b:H4 strain B1323-PB_2011 unitig_2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVD00000000.1 Bac0020306 Escherichia coli O25b:H4 strain B1316-PB_2011 unitig_5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVF00000000.1 Bac0020307 Escherichia coli O25b:H4 strain B1212-PB_2012 unitig_2 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVH00000000.1 Bac0020308 Escherichia coli O25b:H4 strain B1118-PB_2011 unitig_3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVK00000000.1 Bac0020309 Escherichia coli O25b:H4 strain C0114-PB_2013 unitig_0 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVP00000000.1 Bac0020310 Escherichia coli O25b:H4 strain C0107-PB_2013 unitig_1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVQ00000000.1 Bac0020311 Escherichia coli O25b:H4 strain C0064-PB_2013 unitig_0 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVR00000000.1 Bac0020312 Escherichia coli O25b:H4 strain B1137-PB_2011 unitig_17 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVV00000000.1 Bac0020313 Escherichia coli O25b:H4 strain B1522-PB_2012 unitig_0 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 941280 SEVW00000000.1 Bac0020314 Emticicia agri strain 17J42-9 Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia agri 2492393 SEWF00000000.1 Bac0020315 Mucilaginibacter terrigena strain 17JY9-4 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter terrigena 2492395 SEWG00000000.1 Bac0020316 Amycolatopsis suaedae strain 8-3EHSu Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis suaedae 2510978 SFCC00000000.1 Bac0020317 Salmonella enterica subsp. enterica serovar Rauform strain LBMM Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2517904 SGBI00000000.1 Bac0020318 Escherichia coli strain 10G Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SGBR00000000.1 Bac0020319 Pseudoalteromonas sp. MEBiC 03485 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. MEBiC 03485 2571103 SGBT00000000.1 Bac0020320 Streptomyces tsukubensis strain VKM Ac-2618D c79 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tsukubensis 83656 SGFG00000000.1 Bac0020321 Klebsiella pneumoniae strain 53 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SGOL00000000.1 Bac0020322 Acinetobacter wuhouensis strain WCHAW060049 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter wuhouensis 1879050 SGSQ00000000.1 Bac0020323 Acinetobacter junii strain WCHAJ010047 108 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 SGST00000000.1 Bac0020324 Halorubrum sp. SD626R Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. SD626R 1419722 SGTW00000000.1 Bac0020325 Halorubrum sp. CGM4_25_10-8A Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. CGM4_25_10-8A 2518116 SGTX00000000.1 Bac0020326 Halorubrum sp. CGM5_25_10-8B Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. CGM5_25_10-8B 2518115 SGTY00000000.1 Bac0020327 Halorubrum sp. ARQ200 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. ARQ200 1855872 SGTZ00000000.1 Bac0020328 Halorubrum sp. GN12_10-3_MGM Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. GN12_10-3_MGM 2518113 SGUB00000000.1 Bac0020329 Halorubrum sp. GN11_10-6_MGM Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. GN11_10-6_MGM 2518112 SGUC00000000.1 Bac0020330 Limnobacter thiooxidans strain DSM 13612 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Limnobacter Limnobacter thiooxidans Gram-negative rod aerobic autotroph; lithotroph; chemotroph 131080 SGWT00000000.1 Bac0020331 Kerstersia gyiorum strain DSM 16618 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Kerstersia Kerstersia gyiorum 206506 SGWZ00000000.1 Bac0020332 Pigmentiphaga kullae strain K24 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Pigmentiphaga Pigmentiphaga kullae Gram-negative rod non-spore-forming 151784 SGXC00000000.1 Bac0020333 Motilibacter rhizosphaerae strain DSM 45622 Bacillati Actinomycetota Actinomycetes Motilibacterales Motilibacteraceae Motilibacter Motilibacter rhizosphaerae Gram-positive rod non-motile aerobic 37 mesophilic non-spore-forming 598652 SGXD00000000.1 Bac0020334 Aquimarina brevivitae strain DSM 17196 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aquimarina Aquimarina brevivitae Gram-negative rod motile aerobic 37 mesophilic non-spore-forming 323412 SGXE00000000.1 Bac0020335 Kribbella sp. VKM Ac-2569 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella sp. VKM Ac-2569 2512220 SGXJ00000000.1 Bac0020336 Fictibacillus sp. BK138 Bacillati Bacillota Bacilli Caryophanales Fictibacillaceae Fictibacillus Fictibacillus sp. BK138 2512121 SGXL00000000.1 Bac0020337 Cupriavidus agavae strain ASC-9842 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus agavae 1001822 SGXM00000000.1 Bac0020338 Halorubrum sp. SS7 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. SS7 2518119 SGXV00000000.1 Bac0020339 Halorubrum sp. ASP121 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. ASP121 1855858 SGXX00000000.1 Bac0020340 Escherichia coli strain EC_82 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SHHG00000000.1 Bac0020341 Escherichia coli strain EC_57 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SHID00000000.1 Bac0020342 Escherichia coli strain EC_26 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SHJJ00000000.1 Bac0020343 Escherichia coli strain EC_25 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SHJK00000000.1 Bac0020344 Escherichia coli strain EC_11 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SHJU00000000.1 Bac0020345 Escherichia coli strain EC_09 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SHKA00000000.1 Bac0020346 Ancylomarina subtilis strain DSM 28825 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinifilaceae Ancylomarina Ancylomarina subtilis Gram-negative filament non-motile facultative aerobe/anaerobe 29 mesophilic non-spore-forming 1639035 SHKN00000000.1 Bac0020347 Advenella incenata strain DSM 23814 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Advenella Advenella incenata Gram-negative rod aerobic 267800 SHKO00000000.1 Bac0020348 Kribbella rubisoli strain VKM Ac-2540 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella rubisoli 3075929 SHKR00000000.1 Bac0020349 Streptomyces sp. BK239 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. BK239 2512155 SHKS00000000.1 Bac0020350 Streptomyces sp. BK022 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. BK022 2512123 SHKU00000000.1 Bac0020351 Edaphobacter modestus strain DSM 18101 Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter modestus 29 mesophilic 388466 SHKW00000000.1 Bac0020352 Spiribacter vilamensis strain DSM 21056 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Ectothiorhodospiraceae Spiribacter Spiribacter vilamensis 531306 SHLI00000000.1 Bac0020353 Pseudoxanthomonas winnipegensis strain NML 171202 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas winnipegensis 2480810 SHMB00000000.1 Bac0020354 Pseudoxanthomonas winnipegensis strain NML 130969 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Pseudoxanthomonas Pseudoxanthomonas winnipegensis 2480810 SHMG00000000.1 Bac0020355 UNVERIFIED_ORG: Serratia quinivorans strain 124R Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia quinivorans 137545 SHMO00000000.1 Bac0020356 Natrinema hispanicum strain DSM 18328 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema hispanicum 392421 SHMP00000000.1 Bac0020357 Bifidobacterium longum subsp. longum strain MCC10002 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHPM00000000.1 Bac0020358 Bifidobacterium longum subsp. longum strain MCC10003 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHPN00000000.1 Bac0020359 Bifidobacterium longum subsp. longum strain MCC10004 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHPO00000000.1 Bac0020360 Bifidobacterium longum subsp. longum strain MCC10007 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHPQ00000000.1 Bac0020361 Bifidobacterium longum subsp. longum strain MCC10012 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHPV00000000.1 Bac0020362 Bifidobacterium longum subsp. longum strain MCC10015 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHPX00000000.1 Bac0020363 Bifidobacterium longum subsp. longum strain MCC10070 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHRR00000000.1 Bac0020364 Bifidobacterium longum subsp. longum strain MCC10094 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHSN00000000.1 Bac0020365 Bifidobacterium longum subsp. longum strain MCC10096 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHSP00000000.1 Bac0020366 Bifidobacterium longum subsp. longum strain MCC10102 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHSV00000000.1 Bac0020367 Bifidobacterium longum subsp. longum strain MCC10126 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHTN00000000.1 Bac0020368 Bifidobacterium longum subsp. longum strain MCC10120 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Clusters - Pairs - Singles 1679 SHTU00000000.1 Bac0020369 Salmonella enterica subsp. enterica serovar Kentucky strain 3336 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 192955 SIEK00000000.1 Bac0020370 Arthrobacter sp. S39 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. S39 2509720 SIHX00000000.1 Bac0020371 Arthrobacter sp. S41 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. S41 2509721 SIHY00000000.1 Bac0020372 Thermus thermamylovorans strain CFH 72773 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermamylovorans 2509362 SIJL00000000.1 Bac0020373 Enterococcus faecalis strain CECT 7121 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 SIJP00000000.1 Bac0020374 Rhizobium leguminosarum strain SM19 frag_SM19_33 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 SIKF00000000.1 Bac0020375 Rhizobium ruizarguesonis strain SM132 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium ruizarguesonis Negative Rod Yes 1 Aerobe Chemoheterotroph Mesophilic Soil Nonsporulating 2081791 SIOJ00000000.1 Bac0020376 Rhizobium leguminosarum strain SM145A frag_SM145A_18 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 SIPC00000000.1 Bac0020377 Rhizobium leguminosarum strain SM151B frag_SM151B_25 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium leguminosarum Negative Rod Yes 1 2 Aerobe Chemoheterotroph Mesophilic Soil Symbiotic Singles Nonsporulating 384 SIPS00000000.1 Bac0020378 Acinetobacter bereziniae strain L65 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bereziniae 106648 SIRF00000000.1 Bac0020379 Escherichia coli strain SL3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SISD00000000.1 Bac0020380 Klebsiella oxytoca strain SL1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella oxytoca Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 571 SISE00000000.1 Bac0020381 Glaciihabitans arcticus strain RP-3-7 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Glaciihabitans Glaciihabitans arcticus 2668039 SISG00000000.1 Bac0020382 Vibrio cholerae strain IDH06781 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 666 SISP00000000.1 Bac0020383 Hafnia alvei strain PCM_1221 861 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia alvei Negative Rod Facultative anaerobe hot spring 569 SISX00000000.1 Bac0020384 Hansschlegelia quercus strain Dub Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylopilaceae Hansschlegelia Hansschlegelia quercus 2528245 SIUB00000000.1 Bac0020385 Aquabacterium lacunae strain KMB7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Aquabacterium Aquabacterium lacunae 2528630 SIXI00000000.1 Bac0020386 Enterococcus faecalis strain 2SIL2 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Positive Cocci No 1 1 Facultative anaerobe 37 Chemoorganotroph Mesophilic Multiple Free living Nonsporulating Human 1351 SIYF00000000.1 Bac0020387 Citrobacter freundii strain 2016WA-SCV Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 SJDY00000000.1 Bac0020388 Citrobacter freundii strain 2016WA-NCV Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 SJDZ00000000.1 Bac0020389 Kribbella soli strain KCTC 29219 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella soli 1124743 SJJZ00000000.1 Bac0020390 Kribbella pittospori strain NRRL B-24813 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella pittospori Gram-positive rod non-motile aerobic spore-forming 722689 SJKB00000000.1 Bac0020391 Kribbella speibonae strain YM55 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella speibonae 1572660 SJKC00000000.1 Bac0020392 Acinetobacter sp. ANC 4910 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4910 2529850 SJNT00000000.1 Bac0020393 Acinetobacter sp. ANC 4641 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4641 3438471 SJNV00000000.1 Bac0020394 Acinetobacter terrestris strain ANC 4472 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter terrestris 2529843 SJNY00000000.1 Bac0020395 Acinetobacter terrae strain ANC 4281 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter terrae 2731247 SJOA00000000.1 Bac0020396 Acinetobacter terrestris strain ANC 4249 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter terrestris 2529843 SJOB00000000.1 Bac0020397 Acinetobacter sp. ANC 4178 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp. ANC 4178 2529839 SJOD00000000.1 Bac0020398 Kosakonia quasisacchari strain WCHEs120001 106 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia quasisacchari 2529380 SJOP00000000.1 Bac0020399 Flavobacterium silvisoli strain RD-2-33 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium silvisoli 2529433 SJPE00000000.1 Bac0020400 Bacillus mycoides strain B26 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 SJQA00000000.1 Bac0020401 Bacillus mycoides strain MS17 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus mycoides Positive Rod Facultative anaerobe deep sea; Iheya Ridge hydrothermal vent field of Okinawa Trough 1405 SJQD00000000.1 Bac0020402 Citrobacter braakii strain HH10 84 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter braakii negative 57706 SJSE00000000.1 Bac0020403 Citrobacter braakii strain HH7 15 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter braakii negative 57706 SJSH00000000.1 Bac0020404 Citrobacter braakii strain HH6 54 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter braakii negative 57706 SJSI00000000.1 Bac0020405 Citrobacter braakii strain HH5 21 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter braakii negative 57706 SJSJ00000000.1 Bac0020406 Pedobacter frigidisoli strain RP-3-11 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter frigidisoli 2530455 SJSN00000000.1 Bac0020407 Pseudomonas sp. IC_126 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. IC_126 2547400 SJSS00000000.1 Bac0020408 Streptococcus pneumoniae strain BC19010893 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 SJTA00000000.2 Bac0020409 Exiguobacterium sp. SH5S13 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. SH5S13 2510959 SJUS00000000.1 Bac0020410 Exiguobacterium sp. SH0S7 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. SH0S7 2510951 SJVA00000000.1 Bac0020411 Exiguobacterium sp. IPBC4 Bacillati Bacillota Bacilli Caryophanales Exiguobacterium Exiguobacterium sp. IPBC4 2510946 SJVF00000000.1 Bac0020412 Streptococcus sp. KCJ4932 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. KCJ4932 2545465 SJWW00000000.1 Bac0020413 Pasteurella multocida strain MSP58 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 747 SJXC00000000.1 Bac0020414 Roseococcus sp. SYP-B2431 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseococcus Roseococcus sp. SYP-B2431 aerobic 2496640 SJXD00000000.1 Bac0020415 Parasulfuritortus cantonensis strain LSR1 tig00000031 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Parasulfuritortus Parasulfuritortus cantonensis 2528202 SJZB00000000.1 Bac0020416 Klebsiella grimontii strain 2017H2G1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella grimontii 2058152 SKCA00000000.1 Bac0020417 Lysobacter sp. N42 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Lysobacter Lysobacter sp. N42 2545719 SKFB00000000.1 Bac0020418 Paenibacillus albiflavus strain 18JY21-1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus albiflavus 2545760 SKFG00000000.1 Bac0020419 Sulfuricurvum sp. IAE1 k97_308364 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. IAE1 2546102 SLTI00000000.1 Bac0020420 Phocaeicola dorei strain RJX1045 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola dorei Negative Rod No 1 Anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 357276 SLTW00000000.1 Bac0020421 Bacillus timonensis strain AF060A6 SAMN11029899.305 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus timonensis negative dust 1033734 SLUB00000000.1 Bac0020422 Kocuria rosea strain AF099C18 SAMN11029901.1497 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rosea positive Coccus dust; indoor dust; Iranian Ab-e-Siah hot springs; Iranian hot spring; skin Pairs 1275 SLUD00000000.1 Bac0020423 Allofournierella massiliensis strain DSM 100451 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Allofournierella Allofournierella massiliensis 1650663 SLUM00000000.1 Bac0020424 Rhizobium sp. BK251 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. BK251 2512125 SLUQ00000000.1 Bac0020425 Curtobacterium sp. PhB138 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB138 2485183 SLUW00000000.1 Bac0020426 Novosphingobium sp. PhB165 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium sp. PhB165 2485105 SLVB00000000.1 Bac0020427 Paenibacillus sp. BK033 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sp. BK033 2512133 SLVP00000000.1 Bac0020428 Rhodococcus sp. SMB37 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. SMB37 2512213 SLVY00000000.1 Bac0020429 Acetobacteroides hydrogenigenes strain RL-C Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Acetobacteroides Acetobacteroides hydrogenigenes 979970 SLWB00000000.1 Bac0020430 Vibrio crassostreae strain 16BF1_56 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio crassostreae 246167 SLWJ00000000.1 Bac0020431 Natronoflexus pectinivorans strain DSM 24179 Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Marinilabiliaceae Natronoflexus Natronoflexus pectinivorans anaerobic 682526 SLWK00000000.1 Bac0020432 Rathayibacter tanaceti strain VKM Ac-2596 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter tanaceti 1671680 SLWP00000000.1 Bac0020433 Blautia coccoides strain DSM 935 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia producta anaerobic human colonic bacteria 33035 SLWT00000000.1 Bac0020434 Caldanaerobacter subterraneus strain DSM 13054 Bacillati Bacillota Clostridia Thermoanaerobacterales Thermoanaerobacteraceae Caldanaerobacter Caldanaerobacter subterraneus No 1 Anaerobic Chemoheterotroph Thermophilic Multiple Nonsporulating 911092 SLWU00000000.1 Bac0020435 Rhodovulum euryhalinum strain DSM 4868 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum euryhalinum anaerobic 35805 SLWW00000000.1 Bac0020436 Frisingicoccus caecimuris strain DSM 28559 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Frisingicoccus Frisingicoccus caecimuris anaerobic 1796636 SLXA00000000.1 Bac0020437 Bacteroides heparinolyticus strain DSM 23917 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Prevotella heparinolytica negative anaerobic intestinal; oral; oral cavity; urinary tracts 28113 SLXB00000000.1 Bac0020438 Uruburuella suis strain DSM 17474 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Uruburuella Uruburuella suis Gram-negative rod non-motile aerobic non-spore-forming 252130 SLXE00000000.1 Bac0020439 Simplicispira metamorpha strain DSM 1837 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Simplicispira Simplicispira metamorpha 80881 SLXH00000000.1 Bac0020440 Rhodothalassium salexigens DSM 2132 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodothalassiales Rhodothalassiaceae Rhodothalassium Rhodothalassium salexigens anaerobic 1188247 SLXO00000000.1 Bac0020441 Heliophilum fasciatum strain DSM 11170 Bacillati Bacillota Clostridia Eubacteriales Heliobacteriaceae Heliophilum Heliophilum fasciatum anaerobic 35700 SLXT00000000.1 Bac0020442 Baia soyae strain DSM 46831 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Baia Baia soyae 1544746 SLXV00000000.1 Bac0020443 Cricetibacter osteomyelitidis strain DSM 28404 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Cricetibacter Cricetibacter osteomyelitidis microaerophile 1521931 SLYB00000000.1 Bac0020444 Serpentinicella alkaliphila strain DSM 100013 Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Serpentinicella Serpentinicella alkaliphila Gram-positive rod anaerobic 37 mesophilic spore-forming 1734049 SLYC00000000.1 Bac0020445 Rhizobium sp. PP-F2F-G36 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PP-F2F-G36 2135649 SLYE00000000.1 Bac0020446 Rhizobium sp. PP-CC-3G-465 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. PP-CC-3G-465 2135648 SLYH00000000.1 Bac0020447 Raoultella ornithinolytica strain JUb54 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella ornithinolytica Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 54291 SLYQ00000000.1 Bac0020448 Ochrobactrum sp. BH3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum sp. BH3 586218 SLYR00000000.1 Bac0020449 Pseudomonas sp. JUb52 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. JUb52 2485127 SLYS00000000.1 Bac0020450 Sphingobacterium sp. JUb20 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium sp. JUb20 2485110 SLYV00000000.1 Bac0020451 Streptomyces sp. BK205 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. BK205 2512164 SLYY00000000.1 Bac0020452 Bosea sp. BK604 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Alloboseaceae Allobosea Allobosea sp. BK604 2512180 SLZF00000000.1 Bac0020453 Rhizobium sp. BK376 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. BK376 2512149 SLZG00000000.1 Bac0020454 Rhizobium sp. BK418 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium sp. BK418 2512120 SLZK00000000.1 Bac0020455 Paucimonas lemoignei strain DSM 7445 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paucimonas Paucimonas lemoignei 29443 SLZQ00000000.1 Bac0020456 Primorskyibacter sedentarius strain DSM 104836 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Primorskyibacter Primorskyibacter sedentarius 745311 SLZU00000000.1 Bac0020457 Sulfuritortus calidifontis strain DSM 103923 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Thiobacillaceae Sulfuritortus Sulfuritortus calidifontis Gram-negative rod facultative aerobe/anaerobe 45 autotroph; lithotroph; chemotroph thermophilic 1914471 SLZY00000000.1 Bac0020458 Pectinatus cerevisiiphilus strain DSM 20467 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Pectinatus Pectinatus cerevisiiphilus anaerobic 86956 SMAA00000000.1 Bac0020459 Anseongella ginsenosidimutans strain DSM 21100 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Anseongella Anseongella ginsenosidimutans Gram-negative rod aerobic 29 mesophilic non-spore-forming 496056 SMAD00000000.1 Bac0020460 Pseudofulvimonas gallinarii strain DSM 21944 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Pseudofulvimonas Pseudofulvimonas gallinarii 634155 SMAF00000000.1 Bac0020461 Tepidimonas ignava strain DSM 12034 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Tepidimonas Tepidimonas ignava 114249 SMAH00000000.1 Bac0020462 Tepidamorphus gemmatus strain DSM 19345 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Tepidamorphaceae Tepidamorphus Tepidamorphus gemmatus 747076 SMAK00000000.1 Bac0020463 Natranaerovirga pectinivora strain DSM 24629 Bacillati Bacillota Clostridia Lachnospirales Natranaerovirgaceae Natranaerovirga Natranaerovirga pectinivora anaerobic 682400 SMAL00000000.1 Bac0020464 Melghiribacillus thermohalophilus strain DSM 25894 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Melghiribacillus Melghiribacillus thermohalophilus aerobic 1324956 SMAN00000000.1 Bac0020465 Thiobaca trueperi strain DSM 13587 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Thiobaca Thiobaca trueperi anaerobic 127458 SMAO00000000.1 Bac0020466 Martelella mediterranea strain 175.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Martelella Martelella mediterranea 293089 SMAR00000000.1 Bac0020467 Providencia alcalifaciens strain JUb102 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia alcalifaciens Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 126385 SMAS00000000.1 Bac0020468 Vibrio crassostreae strain 28_FP_15 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio crassostreae 246167 SMAW00000000.1 Bac0020469 Rhizobium laguerreae strain FB403 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium laguerreae 1076926 SMBI00000000.1 Bac0020470 Longicatena caecimuris strain DSM 29481 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Longicatena Longicatena caecimuris anaerobic 1796635 SMBP00000000.1 Bac0020471 Bradyrhizobium sp. Y-H1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. Y-H1 2485167 SMBQ00000000.1 Bac0020472 Roseateles saccharophilus strain DSM 654 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles saccharophilus 304 SMBU00000000.1 Bac0020473 Curtobacterium sp. PhB191 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB191 2485202 SMBV00000000.1 Bac0020474 Sphingobacterium alimentarium strain DSM 22362 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium alimentarium Gram-negative rod non-motile aerobic non-spore-forming 797292 SMBZ00000000.1 Bac0020475 Pseudomonas fluorescens strain FW300 25_6 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 SMCJ00000000.1 Bac0020476 Methylomonas methanica strain S-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas methanica Aerobic Mesophilic Marine-Soil Free living 421 SMCN00000000.1 Bac0020477 Biostraticola tofi strain DSM 19580 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bruguierivoracaceae Biostraticola Biostraticola tofi 466109 SMCR00000000.1 Bac0020478 Luteibacter rhizovicinus strain LP_13_YM Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter rhizovicinus negative steak tartare 242606 SMCS00000000.1 Bac0020479 Dietzia cinnamea strain 55 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia cinnamea Positive Aerobe 321318 SMCX00000000.1 Bac0020480 Gluconobacter oxydans strain DSM 3503 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Gluconobacter Gluconobacter oxydans Negative Rod Yes 1 2 Aerobe 25 Mesophilic Multiple Free living Singles 442 SMCY00000000.1 Bac0020481 Thermohydrogenium kirishiense strain DSM 11055 Bacillati Bacillota Clostridia Eubacteriales Syntrophomonadaceae Thermohydrogenium Thermohydrogenium kirishiense anaerobic 937254 SMDB00000000.1 Bac0020482 Laceyella sacchari strain DSM 43356 Bacillati Bacillota Bacilli Caryophanales Thermoactinomycetaceae Laceyella Laceyella sacchari 37482 SMDD00000000.1 Bac0020483 UNVERIFIED_ORG: Dietzia maris strain 97 Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia maris 37915 SMDK00000000.1 Bac0020484 UNVERIFIED_ORG: Bacillus cereus strain 121B Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SMDL00000000.1 Bac0020485 Pantoea allii strain AF015A5 SAMN11029898.819 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea allii Gram-negative rod facultative aerobe/anaerobe dust non-spore-forming 574096 SMFI00000000.1 Bac0020486 Cocleimonas flava strain DSM 24830 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Cocleimonas Cocleimonas flava Gram-negative rod non-motile aerobic 25 mesophilic 634765 SMFQ00000000.1 Bac0020487 Nocardia alba strain DSM 44684 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia alba 29 mesophilic 225051 SMFR00000000.1 Bac0020488 Phorcysia thermohydrogeniphila strain DSM 24425 Pseudomonadati Aquificota Aquificia Desulfurobacteriales Desulfurobacteriaceae Phorcysia Phorcysia thermohydrogeniphila Gram-negative rod anaerobic 45 thermophilic non-spore-forming 936138 SMFV00000000.1 Bac0020489 Pseudonocardia endophytica strain DSM 44969 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia endophytica Gram-positive aerobic 25 mesophilic spore-forming 401976 SMFZ00000000.1 Bac0020490 Lonepinella koalarum strain DSM 10053 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Lonepinella Lonepinella koalarum microaerophile 53417 SMGJ00000000.1 Bac0020491 Paraburkholderia sp. BL9I2N2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL9I2N2 1938809 SMGP00000000.1 Bac0020492 Natranaerovirga hydrolytica strain DSM 24176 Bacillati Bacillota Clostridia Lachnospirales Natranaerovirgaceae Natranaerovirga Natranaerovirga hydrolytica anaerobic 680378 SMGQ00000000.1 Bac0020493 Arundinibacter roseus strain DMA-K-7a Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Arundinibacter Arundinibacter roseus 2070510 SMJU00000000.1 Bac0020494 Actinomadura bangladeshensis strain DSM 45347 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura bangladeshensis Gram-positive aerobic spore-forming 453573 SMJW00000000.1 Bac0020495 Micromonospora sp. KC213 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. KC213 2530378 SMKF00000000.1 Bac0020496 Micromonospora sp. 15K316 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. 15K316 2530376 SMKG00000000.1 Bac0020497 Streptomyces hainanensis strain DSM 41900 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hainanensis rod non-motile aerobic spore-forming 402648 SMKI00000000.1 Bac0020498 Saccharopolyspora terrae strain 16K309 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora terrae 2530384 SMKS00000000.1 Bac0020499 Actinomadura rubrisoli strain H3C3 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura rubrisoli 2530368 SMKU00000000.1 Bac0020500 Actinomadura darangshiensis strain DSM 45941 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura darangshiensis 705336 SMKY00000000.1 Bac0020501 Nonomuraea mesophila strain 6K102 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea mesophila 2530382 SMLD00000000.1 Bac0020502 Delftia tsuruhatensis strain 11304 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Delftia Delftia tsuruhatensis roots 180282 SMMJ00000000.1 Bac0020503 Streptomyces sp. WAC05374 strain WAC05374 delta StrF Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC05374 2487420 SMNO00000000.1 Bac0020504 Streptomyces sp. WAC05374 strain WAC05374 delta StrI Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC05374 2487420 SMNP00000000.1 Bac0020505 Streptomyces sp. WAC05374 strain WAC05374 delta StrH Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. WAC05374 2487420 SMNQ00000000.1 Bac0020506 Paraburkholderia guartelaensis strain CNPSo 3008 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia guartelaensis 2546446 SMOD00000000.1 Bac0020507 Salmonella enterica subsp. enterica serovar Agona strain SL_2_05 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOO00000000.1 Bac0020508 Salmonella enterica subsp. enterica serovar Agona strain SL_3_07 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOP00000000.1 Bac0020509 Salmonella enterica subsp. enterica serovar Agona strain SL_5_09 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOR00000000.1 Bac0020510 Salmonella enterica subsp. enterica serovar Agona strain SL_6_10 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOS00000000.1 Bac0020511 Salmonella enterica subsp. enterica serovar Agona strain SL_7_12 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOT00000000.1 Bac0020512 Salmonella enterica subsp. enterica serovar Agona strain SL_8_13 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOU00000000.1 Bac0020513 Salmonella enterica subsp. enterica serovar Agona strain SL_9_15 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOV00000000.1 Bac0020514 Salmonella enterica subsp. enterica serovar Agona strain SL_10_20 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMOW00000000.1 Bac0020515 Salmonella enterica subsp. enterica serovar Kentucky strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 192955 SMOX00000000.1 Bac0020516 Salmonella enterica subsp. enterica serovar Corvallis strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 593905 SMPA00000000.1 Bac0020517 Salmonella enterica subsp. enterica serovar Agona strain SL_15_94 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMPB00000000.1 Bac0020518 Salmonella enterica subsp. enterica serovar Agona strain SL_25_114 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMPL00000000.1 Bac0020519 Salmonella enterica subsp. enterica serovar Agona strain SL_33_127 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 58095 SMPT00000000.1 Bac0020520 Salmonella enterica subsp. enterica serovar Chester strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 149386 SMPW00000000.1 Bac0020521 Salmonella enterica subsp. enterica serovar Mountpleasant strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2547401 SMQM00000000.1 Bac0020522 Salmonella enterica subsp. enterica serovar Stanley strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 192953 SMQX00000000.1 Bac0020523 Salmonella enterica subsp. enterica serovar Vancouver strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 2547402 SMRB00000000.1 Bac0020524 Salmonella enterica subsp. enterica serovar Java strain SL_75_D66 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 224729 SMRG00000000.1 Bac0020525 Paraburkholderia silviterrae strain 4M-K11 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia silviterrae 2528715 SMRP00000000.1 Bac0020526 Arthrobacter terricola strain JH1-1 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter terricola 2547396 SMRU00000000.1 Bac0020527 Mycobacterium eburneum strain DSM 44358 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium eburneum Gram-positive non-motile aerobic 37 mesophilic non-spore-forming 2035343 SMSD00000000.1 Bac0020528 Luteimonas aestuarii strain B9 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas aestuarii 453837 SMTF00000000.1 Bac0020529 Rhizobium deserti strain SPY-1 ZB100028 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium deserti 2547961 SMTL00000000.1 Bac0020530 Klebsiella pneumoniae strain RJ1071 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SMTN00000000.1 Bac0020531 Acinetobacter baumannii strain Pesh-14 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 SMUG00000000.1 Bac0020532 Antarcticimicrobium luteum strain 318-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Antarcticimicrobium Antarcticimicrobium luteum 2547397 SMUV00000000.1 Bac0020533 Sapientia aquatica strain SA-152 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Sapientia Sapientia aquatica 1549640 SMYL00000000.1 Bac0020534 Bacillus salipaludis strain WN066 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus salipaludis 2547811 SMYO00000000.1 Bac0020535 Pseudomonas aeruginosa strain NUBRI-P 99 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 SMZF00000000.1 Bac0020536 Seonamhaeicola sediminis strain W255 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Seonamhaeicola Seonamhaeicola sediminis 2528206 SMZJ00000000.2 Bac0020537 Meridianimarinicoccus aquatilis strain SM1902 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Meridianimarinicoccus Meridianimarinicoccus aquatilis 2552766 SMZO00000000.1 Bac0020538 Arthrobacter nitrophenolicus strain S-A1 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter nitrophenolicus 683150 SMZQ00000000.1 Bac0020539 Paenibacillus amylolyticus strain S-B4 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus amylolyticus Positive Rod Yes 1 Aerobic 30 Chemoheterotroph Mesophilic Soil Chains Sporulating 1451 SMZV00000000.1 Bac0020540 Paenibacillus dendritiformis strain F-A1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus dendritiformis 130049 SMZW00000000.1 Bac0020541 Flagellimonas alvinocaridis strain SCR12 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas alvinocaridis 2530200 SNTZ00000000.1 Bac0020542 Scandinavium goeteborgense strain BIGb0156 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Scandinavium Scandinavium goeteborgense 1851514 SNVX00000000.1 Bac0020543 Buttiauxella sp. JUb87 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella sp. JUb87 2485129 SNVY00000000.1 Bac0020544 Paraburkholderia sp. BL10I2N1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL10I2N1 1938796 SNWA00000000.1 Bac0020545 Herminiimonas fonticola strain DSM 18555 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herminiimonas Herminiimonas fonticola aerobic 303380 SNWF00000000.1 Bac0020546 Sunxiuqinia elliptica strain 114D Pseudomonadati Bacteroidota Bacteroidia Marinilabiliales Prolixibacteraceae Sunxiuqinia Sunxiuqinia elliptica 655355 SNWI00000000.1 Bac0020547 Mycobacterium sp. BK086 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. BK086 2512165 SNWL00000000.1 Bac0020548 Enemella evansiae strain DSM 21351 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Enemella Enemella evansiae 2016499 SNXA00000000.1 Bac0020549 Flavobacterium sp. 245 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. 245 2512115 SNXB00000000.1 Bac0020550 Marinomonas balearica strain CECT 7378 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas balearica rod aerobic 491947 SNXC00000000.1 Bac0020551 Idiomarina aquatica strain 18_TX Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Idiomarinaceae Idiomarina Idiomarina aquatica 1327752 SNXI00000000.1 Bac0020552 Brachybacterium sp. AG952 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium sp. AG952 2183989 SNXV00000000.1 Bac0020553 Zeaxanthinibacter enoshimensis strain DSM 18435 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zeaxanthinibacter Zeaxanthinibacter enoshimensis Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 392009 SNYI00000000.1 Bac0020554 Thiopseudomonas denitrificans strain DSM 28679 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Thiopseudomonas Thiopseudomonas denitrificans 1501432 SNYK00000000.1 Bac0020555 Tepidicella xavieri strain DSM 19605 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Tepidicella Tepidicella xavieri Gram-negative rod aerobic 45 thermophilic non-spore-forming 360241 SNYL00000000.1 Bac0020556 Actinomycetospora succinea strain DSM 45775 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora succinea 663603 SNYO00000000.1 Bac0020557 Mesocricetibacter intestinalis strain DSM 28403 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mesocricetibacter Mesocricetibacter intestinalis microaerophile 1521930 SNYQ00000000.1 Bac0020558 Sphingobacterium yanglingense strain DSM 28353 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium yanglingense 1437280 SNYV00000000.1 Bac0020559 Marinicella litoralis strain DSM 25488 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Marinicellaceae Marinicella Marinicella litoralis Gram-negative rod non-motile aerobic 25 mesophilic 644220 SNZB00000000.1 Bac0020560 Flavobacterium cheniae strain DSM 22462 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium cheniae Gram-negative rod motile aerobic 29 mesophilic non-spore-forming 295428 SNZC00000000.1 Bac0020561 Hydromonas duriensis strain DSM 102852 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Hydromonas Hydromonas duriensis aerobic 1527608 SNZE00000000.1 Bac0020562 Tahibacter aquaticus strain DSM 21667 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Tahibacter Tahibacter aquaticus 520092 SNZH00000000.1 Bac0020563 Halomonas ventosae strain CECT 5797 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas ventosae 229007 SNZJ00000000.1 Bac0020564 Listeria rocourtiae strain CECT 7972 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Paenilisteria Paenilisteria rocourtiae Gram-positive rod facultative aerobe/anaerobe 29 mesophilic non-spore-forming 647910 SNZK00000000.1 Bac0020565 Sphingobacterium paludis strain CGMCC 1.12801 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium paludis 1476465 SNZV00000000.1 Bac0020566 Maribacter caenipelagi strain CECT 8455 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter caenipelagi 1447781 SNZW00000000.1 Bac0020567 Halanaerobium congolense strain UTICA-S4D12 Bacillati Bacillota Clostridia Halanaerobiales Halanaerobiaceae Halanaerobium Halanaerobium congolense 54121 SOAA00000000.1 Bac0020568 Comamonas sp. JUb58 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas sp. JUb58 2485114 SOAL00000000.1 Bac0020569 Amnibacterium kyonggiense strain DSM 24782 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Amnibacterium Amnibacterium kyonggiense Gram-positive rod non-motile aerobic 29 mesophilic 595671 SOAM00000000.1 Bac0020570 Nesterenkonia aurantiaca strain DSM 27373 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia aurantiaca Gram-positive sphere non-motile aerobic 25 mesophilic non-spore-forming 1436010 SOAN00000000.1 Bac0020571 Halospina denitrificans strain DSM 15505 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halospina Halospina denitrificans Gram-negative rod non-motile facultative aerobe/anaerobe non-spore-forming 332522 SOAX00000000.1 Bac0020572 Arthrobacter sp. AG258 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. AG258 2183899 SOBI00000000.1 Bac0020573 Bacillus sp. AG1163 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. AG1163 2183999 SOBJ00000000.1 Bac0020574 Streptomyces sp. 846.5 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. 846.5 2485156 SOBN00000000.1 Bac0020575 Bacillus sp. BK450 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. BK450 2512182 SOBQ00000000.1 Bac0020576 Chromohalobacter marismortui strain DSM 6770 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Chromohalobacter Chromohalobacter marismortui 42055 SOBR00000000.1 Bac0020577 Arthrobacter sp. JUb115 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. JUb115 2485108 SOBS00000000.1 Bac0020578 Prosthecobacter fusiformis strain ATCC 25309 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis 48464 SOCA00000000.1 Bac0020579 Metamycoplasma hyosynoviae strain ATCC 25591 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma hyosynoviae 29559 SOCH00000000.1 Bac0020580 Stenotrophomonas sp. CC22-02 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas sp. CC22-02 1378087 SOCO00000000.1 Bac0020581 Actinophytocola oryzae strain DSM 45499 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinophytocola Actinophytocola oryzae Gram-positive non-motile aerobic 25 mesophilic spore-forming 502181 SOCP00000000.1 Bac0020582 Curtobacterium sp. PhB190 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. PhB190 2485201 SODN00000000.1 Bac0020583 Kribbella pratensis strain VKM Ac-2573 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella pratensis 2512112 SODP00000000.1 Bac0020584 Kribbella sp. VKM Ac-2566 Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella sp. VKM Ac-2566 2512218 SODT00000000.1 Bac0020585 Dinghuibacter silviterrae strain DSM 100059 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Dinghuibacter Dinghuibacter silviterrae Gram-negative rod non-motile aerobic 29 mesophilic 1539049 SODV00000000.1 Bac0020586 Buttiauxella sp. BIGb0552 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Buttiauxella Buttiauxella sp. BIGb0552 2485120 SODY00000000.1 Bac0020587 Petrotoga sibirica strain DSM 13575 Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga Petrotoga sibirica anaerobic 156202 SODZ00000000.1 Bac0020588 Rhodovulum visakhapatnamense strain JA181 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum visakhapatnamense Gram-negative rod non-motile facultative aerobe/anaerobe 29 mesophilic 364297 SOEB00000000.1 Bac0020589 Epilithonimonas xixisoli strain CGMCC 1.12802 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Epilithonimonas Epilithonimonas xixisoli 1476462 SOEO00000000.1 Bac0020590 UNVERIFIED_CONTAM: Lysinibacillus xylanilyticus strain KCTC 13423 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus xylanilyticus 582475 SOEQ00000000.1 Bac0020591 Enterobacter sp. AD2-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. AD2-3 2547834 SOPQ00000000.1 Bac0020592 Paraburkholderia sp. BL6665CI2N2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sp. BL6665CI2N2 1938806 SORC00000000.1 Bac0020593 Janthinobacterium sp. 75 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium sp. 75 2135628 SORD00000000.1 Bac0020594 Paraburkholderia rhizosphaerae strain LMG 29544 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia rhizosphaerae 480658 SORE00000000.1 Bac0020595 Alicyclobacillus sacchari strain DSM 17974 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus sacchari Gram-positive rod aerobic 45 thermophilic spore-forming 392010 SORF00000000.1 Bac0020596 Aminivibrio pyruvatiphilus strain DSM 25964 Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio pyruvatiphilus Gram-negative rod anaerobic 37 mesophilic non-spore-forming 1005740 SORI00000000.1 Bac0020597 Klebsiella pneumoniae strain NUBRI-K 137 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SOYT00000000.1 Bac0020598 Vibrio parahaemolyticus strain 16763 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus Negative Rod Yes 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Aquatic Free living Singles Nonsporulating Human 670 SPOT00000000.1 Bac0020599 Salmonella enterica subsp. enterica serovar Typhi strain 5740 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 90370 SQRG00000000.1 Bac0020600 Salmonella enterica subsp. enterica serovar Typhi strain 15604 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 90370 SQRP00000000.1 Bac0020601 Aliishimia ponticola strain MYP11 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Aliishimia Aliishimia ponticola 2499833 SRKY00000000.1 Bac0020602 Pseudoalteromonas sp. MEBiC 03607 3607_2_1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas sp. MEBiC 03607 2563601 SRRY00000000.1 Bac0020603 Geomonas terrae strain Red111 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas terrae 2562681 SRSC00000000.1 Bac0020604 Neolewinella litorea strain HSMS-39 Pseudomonadati Bacteroidota Saprospiria Saprospirales Lewinellaceae Neolewinella Neolewinella litorea 2562452 SRSF00000000.1 Bac0020605 Flavivirga rizhaonensis strain RZ03 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavivirga Flavivirga rizhaonensis 2559571 SRSO00000000.1 Bac0020606 Mesorhizobium sp. M1C.F.Ca.ET.144.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.144.01.1.1 2563921 SRSS00000000.1 Bac0020607 Mesorhizobium sp. M2D.F.Ca.ET.147.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2D.F.Ca.ET.147.01.1.1 2563934 SRSV00000000.1 Bac0020608 Mesorhizobium sp. M4B.F.Ca.ET.150.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.150.01.1.1 2563948 SRSW00000000.1 Bac0020609 Mesorhizobium sp. M4B.F.Ca.ET.169.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.169.01.1.1 2563949 SRTK00000000.1 Bac0020610 Mesorhizobium sp. M2D.F.Ca.ET.171.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2D.F.Ca.ET.171.01.1.1 2563936 SRTL00000000.1 Bac0020611 Mesorhizobium sp. M4B.F.Ca.ET.172.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.172.01.1.1 2563950 SRTM00000000.1 Bac0020612 Mesorhizobium sp. M8A.F.Ca.ET.182.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.182.01.1.1 2563964 SRTW00000000.1 Bac0020613 Mesorhizobium sp. M1C.F.Ca.ET.188.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.188.01.1.1 2563924 SRUA00000000.1 Bac0020614 Mesorhizobium sp. M4B.F.Ca.ET.190.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.190.01.1.1 2563951 SRUC00000000.1 Bac0020615 Mesorhizobium sp. M1C.F.Ca.ET.195.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.195.01.1.1 2563927 SRUG00000000.1 Bac0020616 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 2563965 SRUI00000000.1 Bac0020617 Mesorhizobium sp. M4B.F.Ca.ET.200.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.200.01.1.1 2563952 SRUL00000000.1 Bac0020618 Mesorhizobium sp. M3A.F.Ca.ET.201.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M3A.F.Ca.ET.201.01.1.1 2563946 SRUM00000000.1 Bac0020619 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 2563967 SRUN00000000.1 Bac0020620 Mesorhizobium sp. M1C.F.Ca.ET.204.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M1C.F.Ca.ET.204.01.1.1 2563929 SRUP00000000.1 Bac0020621 Mesorhizobium sp. M4B.F.Ca.ET.214.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M4B.F.Ca.ET.214.01.1.1 2563955 SRUX00000000.1 Bac0020622 Mesorhizobium sp. M2D.F.Ca.ET.233.01.1.1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. M2D.F.Ca.ET.233.01.1.1 2563943 SRVJ00000000.1 Bac0020623 Stenotrophomonas maltophilia strain SMYN45 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 SRVP00000000.1 Bac0020624 Escherichia coli strain KCJK8056 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRVR00000000.1 Bac0020625 Escherichia coli strain KCJK8062 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRVU00000000.1 Bac0020626 Escherichia coli strain KCJK8065 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRVV00000000.1 Bac0020627 Escherichia coli strain KCJK8074 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRVX00000000.1 Bac0020628 Escherichia coli strain KCJK8081 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRVY00000000.1 Bac0020629 Escherichia coli strain KCJK8124 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWC00000000.1 Bac0020630 Escherichia coli strain KCJK8128 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWD00000000.1 Bac0020631 Escherichia coli strain KCJK8160 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWE00000000.1 Bac0020632 Escherichia coli strain KCJK8170 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWF00000000.1 Bac0020633 Escherichia coli strain KCJK8192 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWG00000000.1 Bac0020634 Escherichia coli strain KCJK8198 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWK00000000.1 Bac0020635 Escherichia coli strain KCJK8229 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWL00000000.1 Bac0020636 Escherichia coli strain KCJK8357 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWT00000000.1 Bac0020637 Escherichia coli strain KCJK8392 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWV00000000.1 Bac0020638 Escherichia coli strain KCJK8397 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWW00000000.1 Bac0020639 Escherichia coli strain KCJK8399 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWX00000000.1 Bac0020640 Escherichia coli strain KCJK8354 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SRWY00000000.1 Bac0020641 Pantoea agglomerans strain Bl3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea agglomerans Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 549 SRXP00000000.1 Bac0020642 Pseudomonas fluorescens strain LoriBL Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles 294 SRXQ00000000.1 Bac0020643 Stutzerimonas stutzeri strain CM14 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 SRXR00000000.1 Bac0020644 Sphingomonas naasensis strain KIS18-15 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas naasensis 1344951 SRXU00000000.1 Bac0020645 Marinicauda algicola strain JCM 31718 Pseudomonadati Pseudomonadota Alphaproteobacteria Maricaulales Maricaulaceae Marinicauda Marinicauda algicola 2029849 SRXW00000000.1 Bac0020646 Dubosiella muris strain NM09_H32 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Dubosiella Dubosiella muris 3038133 SRYG00000000.1 Bac0020647 Limosilactobacillus reuteri strain NM12_1-47 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus reuteri Positive Rod No 1 Facultative anaerobe Mesophilic Multiple Free living Chains 1598 SRYI00000000.1 Bac0020648 Phocaeicola sartorii strain NM22_B1 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola sartorii 671267 SRYJ00000000.1 Bac0020649 Parabacteroides distasonis strain NM39_I3 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Tannerellaceae Parabacteroides Parabacteroides distasonis Positive Rod No 1 2 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 823 SRYM00000000.1 Bac0020650 Microbacterium laevaniformans strain NM46_B2-13 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium laevaniformans 36807 SRYO00000000.1 Bac0020651 Clostridium perfringens strain NM49_B9-7 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 SRYQ00000000.1 Bac0020652 Clostridium sartagoforme strain NM50_B9-20 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sartagoforme pit mud 84031 SRYR00000000.1 Bac0020653 Bacteroides caecimuris strain NM63_1-25 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides caecimuris 1796613 SRYX00000000.1 Bac0020654 Muribaculum sp. NM65_B17 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculum Muribaculum sp. NM65_B17 2516961 SRYY00000000.1 Bac0020655 Bacteroides muris (ex Afrizal et al. 2022) strain NM69_E16B Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides muris (ex Afrizal et al. 2022) 2516960 SRYZ00000000.1 Bac0020656 Bacteroides acidifaciens strain NM70_E10 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides acidifaciens 85831 SRZA00000000.1 Bac0020657 Cellulomonas shaoxiangyii strain Z29 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas shaoxiangyii 2566013 SRZI00000000.1 Bac0020658 Stenotrophomonas maltophilia strain SMYN41 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia Negative Rod Yes 1 2 Aerobe Mesophilic Multiple Free living 40324 SRZW00000000.1 Bac0020659 Marinobacter orientalis strain W62 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter orientalis 1928859 SRZX00000000.1 Bac0020660 Vibrio cholerae O1 biovar El Tor strain M893 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 686 SSAA00000000.1 Bac0020661 Vibrio cholerae O1 biovar El Tor strain M1062 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cholerae Negative Rod No 1 2 Facultative anaerobe 20 Heterotroph Mesophilic Multiple Free living Singles 686 SSAB00000000.1 Bac0020662 Streptococcus pyogenes strain emm1_S19 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSAI00000000.1 Bac0020663 Streptococcus pyogenes strain emm1_S18 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSAJ00000000.1 Bac0020664 Streptococcus pyogenes strain emm1_S16 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSAL00000000.1 Bac0020665 Streptococcus pyogenes strain emm1_S14 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSAN00000000.1 Bac0020666 Streptococcus pyogenes strain emm1_S7 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSAV00000000.1 Bac0020667 Streptococcus pyogenes strain emm1_S6 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSAW00000000.1 Bac0020668 Streptococcus pyogenes strain emm1_S5 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSAX00000000.1 Bac0020669 Bacterium NHP-B strain NHP-B bacterium NHP-B 2491344 SSAZ00000000.1 Bac0020670 Acinetobacter baumannii strain Ab5038 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 SSBA00000000.1 Bac0020671 Streptococcus pyogenes strain emm1_S3 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Chains - Pairs 1314 SSBF00000000.1 Bac0020672 Streptomyces sp. A1277 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. A1277 2563103 SSBI00000000.1 Bac0020673 Streptomyces sp. A1136 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. A1136 2563102 SSBJ00000000.1 Bac0020674 Streptomyces sp. A0642 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. A0642 2563100 SSBL00000000.1 Bac0020675 Streptomyces sp. A0592 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. A0592 2563099 SSBM00000000.1 Bac0020676 Streptomyces sp. LRa12 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. LRa12 2563107 SSBN00000000.1 Bac0020677 Lactococcus lactis strain gh1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human; Non-pathogenic 1358 SSBR00000000.1 Bac0020678 Ensifer adhaerens strain YX1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer adhaerens 106592 SSBU00000000.1 Bac0020679 Histophilus somni strain UOC-EPH-KLM-09 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 731 SSCN00000000.1 Bac0020680 Histophilus somni strain UOC-EPH-KLM-011 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 731 SSCO00000000.1 Bac0020681 Histophilus somni strain UOC-EPH-KLM-010 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Histophilus Histophilus somni Negative Rod 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated 731 SSCQ00000000.1 Bac0020682 Escherichia coli strain MGF013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSCX00000000.1 Bac0020683 Klebsiella pneumoniae strain MGF010 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSCY00000000.1 Bac0020684 Pseudomonas aeruginosa strain 19-032124 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 SSDC00000000.1 Bac0020685 Pseudomonas aeruginosa strain 19-028480 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 SSDD00000000.1 Bac0020686 Pseudomonas aeruginosa strain 19-026975 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 SSDE00000000.1 Bac0020687 Neisseria gonorrhoeae strain GC-205 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SSHK00000000.1 Bac0020688 Burkholderia cepacia strain b99 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 SSHL00000000.1 Bac0020689 Streptomyces sp. A1499 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. A1499 2563104 SSHP00000000.1 Bac0020690 Bacteroides fragilis strain BFR_KZ03 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 SSKJ00000000.1 Bac0020691 Bacteroides fragilis strain BFR_KZ02 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 SSKK00000000.1 Bac0020692 Bacteroides fragilis strain BFR_KZ01 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 817 SSKL00000000.1 Bac0020693 Bifidobacterium bifidum strain ICIS-202 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium bifidum Positive Rod No 1 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 1681 SSMS00000000.1 Bac0020694 Aliigemmobacter aestuarii strain CC-PW-75 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Aliigemmobacter Aliigemmobacter aestuarii 1445661 SSND00000000.1 Bac0020695 Metabacillus sediminilitoris strain DSL-17 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Metabacillus Metabacillus sediminilitoris 2567941 SSNT00000000.1 Bac0020696 Deinococcus sp. Arct2-2 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. Arct2-2 2568653 SSNW00000000.1 Bac0020697 Cohnella fermenti strain CC-MHH1044 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella fermenti 2565925 SSOB00000000.1 Bac0020698 Escherichia coli strain Broiler parent54 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQA00000000.1 Bac0020699 Escherichia coli strain Broiler parent55 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQB00000000.1 Bac0020700 Escherichia coli strain Broiler parent60 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQF00000000.1 Bac0020701 Escherichia coli strain Broiler parent61 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQG00000000.1 Bac0020702 Escherichia coli strain Broiler parent62 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQH00000000.1 Bac0020703 Escherichia coli strain Broiler parent63 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQI00000000.1 Bac0020704 Escherichia coli strain Broiler parent67 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQL00000000.1 Bac0020705 Escherichia coli strain Broiler parent72 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQQ00000000.1 Bac0020706 Escherichia coli strain Broiler parent73 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQR00000000.1 Bac0020707 Escherichia coli strain Broiler parent76 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQU00000000.1 Bac0020708 Escherichia coli strain Broiler parent78 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQV00000000.1 Bac0020709 Escherichia coli strain Broiler parent84 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSQZ00000000.1 Bac0020710 Escherichia coli strain Broiler parent85 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRA00000000.1 Bac0020711 Escherichia coli strain Broiler parent86 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRB00000000.1 Bac0020712 Escherichia coli strain Broiler parent87 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRC00000000.1 Bac0020713 Escherichia coli strain Broiler parent88 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRD00000000.1 Bac0020714 Escherichia coli strain Broiler parent89 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRE00000000.1 Bac0020715 Escherichia coli strain Broiler parent90 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRF00000000.1 Bac0020716 Escherichia coli strain Broiler parent92 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRG00000000.1 Bac0020717 Escherichia coli strain Broiler parent94 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRI00000000.1 Bac0020718 Escherichia coli strain Broiler parent95 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRJ00000000.1 Bac0020719 Escherichia coli strain Broiler parent103 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRR00000000.1 Bac0020720 Escherichia coli strain Broiler parent105 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRT00000000.1 Bac0020721 Escherichia coli strain Broiler parent107 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRV00000000.1 Bac0020722 Escherichia coli strain Broiler parent108 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRW00000000.1 Bac0020723 Escherichia coli strain Broiler parent111 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSRY00000000.1 Bac0020724 Escherichia coli strain Broiler parent114 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSSB00000000.1 Bac0020725 Escherichia coli strain Broiler parent118 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SSSE00000000.1 Bac0020726 Bacillus sp. HUB-I-004 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. HUB-I-004 2568878 SSSO00000000.1 Bac0020727 Bifidobacterium pseudolongum strain NM87_A27A Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum Positive Rod No 1 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 1694 SSTF00000000.1 Bac0020728 Parvibacter caecicola strain NM48_B13 14 Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Parvibacter Parvibacter caecicola 747645 SSTM00000000.1 Bac0020729 Bacteroides faecichinchillae strain NM45_B5 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides faecichinchillae Gram-negative rod non-motile anaerobic 37 mesophilic non-spore-forming 871325 SSTN00000000.1 Bac0020730 Escherichia coli K-12 strain 71 GCID_CRE_0142_NODE_147 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 83333 SSTS00000000.1 Bac0020731 Klebsiella pneumoniae strain 75 GCID_CRE_0146_NODE_71 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSTW00000000.1 Bac0020732 Klebsiella pneumoniae subsp. pneumoniae strain 76 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSTX00000000.1 Bac0020733 Klebsiella pneumoniae subsp. pneumoniae strain 48 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUD00000000.1 Bac0020734 Klebsiella pneumoniae subsp. pneumoniae strain 51 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUG00000000.1 Bac0020735 Klebsiella pneumoniae subsp. pneumoniae strain 53 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUI00000000.1 Bac0020736 Klebsiella pneumoniae subsp. pneumoniae strain 55 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUJ00000000.1 Bac0020737 Klebsiella pneumoniae subsp. pneumoniae strain 56 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUK00000000.1 Bac0020738 Klebsiella pneumoniae subsp. pneumoniae strain 59 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUL00000000.1 Bac0020739 Klebsiella pneumoniae subsp. pneumoniae strain 61 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUN00000000.1 Bac0020740 Klebsiella pneumoniae subsp. pneumoniae strain 63 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUP00000000.1 Bac0020741 Klebsiella pneumoniae subsp. pneumoniae strain 64 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSUQ00000000.1 Bac0020742 Escherichia coli K-12 strain 69 GCID_CRE_0140_NODE_157 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 83333 SSUV00000000.1 Bac0020743 Escherichia coli K-12 strain 70 GCID_CRE_0141_NODE_158 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 83333 SSUW00000000.1 Bac0020744 Arthrobacter echini strain AM23 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter echini Gram-positive sphere non-motile aerobic 16 psychrotolerant 1529066 SSWH00000000.1 Bac0020745 Rhodococcus qingshengii strain S10 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus qingshengii 334542 SSWN00000000.1 Bac0020746 Streptococcus agalactiae strain W8A6 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1311 SSWU00000000.1 Bac0020747 Lampropedia aestuarii strain YIM MLB12 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Lampropedia Lampropedia aestuarii Negative Rod Yes 1 2 Aerobe Heterotroph Mesophilic Multiple Free living Singles 2562762 SSWX00000000.1 Bac0020748 Streptococcus suis strain WUSS327 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 SSXL00000000.1 Bac0020749 Streptococcus suis strain WUSS425 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic Specialized Free living Chains - Pairs - Singles 1307 SSXP00000000.1 Bac0020750 Klebsiella pneumoniae strain SIKP038 42_NODE_96 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSYE00000000.1 Bac0020751 Klebsiella pneumoniae strain SIKP039 43_NODE_86 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSYF00000000.1 Bac0020752 Klebsiella pneumoniae subsp. pneumoniae strain SIKP040 44_NODE_79 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSYG00000000.1 Bac0020753 Klebsiella pneumoniae subsp. pneumoniae strain SIKP044 49_NODE_80 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSYK00000000.1 Bac0020754 Klebsiella pneumoniae subsp. pneumoniae strain SIKP004 4_NODE_100 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSYP00000000.1 Bac0020755 Klebsiella pneumoniae subsp. pneumoniae strain SIKP005 S_NODE_103 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSYQ00000000.1 Bac0020756 Klebsiella pneumoniae strain SIKP008 9_NODE_96 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSYT00000000.1 Bac0020757 Klebsiella pneumoniae subsp. pneumoniae strain SIKP013 14_NODE_93 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSYW00000000.1 Bac0020758 Klebsiella pneumoniae subsp. pneumoniae strain SIKP023 24_NODE_79 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSZC00000000.1 Bac0020759 Klebsiella pneumoniae strain SIKP028 29_NODE_98 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSZF00000000.1 Bac0020760 Escherichia coli K-12 strain SIEC033 34_NODE_141 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 83333 SSZJ00000000.1 Bac0020761 Klebsiella pneumoniae subsp. pneumoniae strain SIKP001 1_NODE_102 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSZL00000000.1 Bac0020762 Klebsiella pneumoniae subsp. pneumoniae strain SIKP002 2_NODE_102 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSZM00000000.1 Bac0020763 Klebsiella pneumoniae strain SIKP097 105_NODE_123 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSZQ00000000.1 Bac0020764 Klebsiella pneumoniae subsp. pneumoniae strain SIKP098 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSZR00000000.1 Bac0020765 Klebsiella pneumoniae subsp. pneumoniae strain SIKP100 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSZT00000000.1 Bac0020766 Klebsiella pneumoniae subsp. pneumoniae strain SIKP102 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSZV00000000.1 Bac0020767 Klebsiella pneumoniae subsp. pneumoniae strain SIKP103 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 SSZW00000000.1 Bac0020768 Klebsiella pneumoniae strain SIKP065 70_NODE_73 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSZX00000000.1 Bac0020769 Klebsiella pneumoniae strain SIKP066 71_NODE_90 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SSZY00000000.1 Bac0020770 Klebsiella pneumoniae subsp. pneumoniae strain SIKP069 74_NODE_96 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STAB00000000.1 Bac0020771 Klebsiella pneumoniae strain SIKP070 76_NODE_99 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STAC00000000.1 Bac0020772 Klebsiella pneumoniae strain SIKP073 79_NODE_84 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STAF00000000.1 Bac0020773 Klebsiella pneumoniae subsp. pneumoniae strain SIKP080 88_NODE_74 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STAM00000000.1 Bac0020774 Klebsiella pneumoniae strain SIKP086 94_NODE_92 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STAQ00000000.1 Bac0020775 Klebsiella pneumoniae subsp. pneumoniae strain SIKP087 95_NODE_93 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STAR00000000.1 Bac0020776 Klebsiella pneumoniae subsp. pneumoniae strain SIKP090 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STAU00000000.1 Bac0020777 Klebsiella pneumoniae subsp. pneumoniae strain SIKP091 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STAV00000000.1 Bac0020778 Klebsiella pneumoniae strain SIKP092 100_NODE_92 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STAW00000000.1 Bac0020779 Klebsiella pneumoniae strain SIKP051 56_NODE_96 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBB00000000.1 Bac0020780 Klebsiella pneumoniae strain SIKP052 57_NODE_86 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBC00000000.1 Bac0020781 Klebsiella pneumoniae strain SIKP054 59_NODE_89 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBE00000000.1 Bac0020782 Klebsiella pneumoniae subsp. pneumoniae strain SIKP056 61_NODE_91 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STBG00000000.1 Bac0020783 Klebsiella pneumoniae subsp. pneumoniae strain SIKP059 64_NODE_74 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STBJ00000000.1 Bac0020784 Klebsiella pneumoniae strain SIKP061 66_NODE_88 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBL00000000.1 Bac0020785 Klebsiella pneumoniae subsp. pneumoniae strain SIKP062 67_NODE_85 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STBM00000000.1 Bac0020786 Klebsiella pneumoniae strain SIKP063 68_NODE_78 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBN00000000.1 Bac0020787 Klebsiella pneumoniae subsp. pneumoniae strain SIEB064 69_NODE_92 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STBO00000000.1 Bac0020788 Klebsiella pneumoniae strain SIKP158 167_NODE_88 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBR00000000.1 Bac0020789 Klebsiella pneumoniae strain SIKP127 136_NODE_80 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBV00000000.1 Bac0020790 Klebsiella pneumoniae strain SIKP130 139_NODE_73 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBY00000000.1 Bac0020791 Klebsiella pneumoniae strain SIKP131 140_NODE_77 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STBZ00000000.1 Bac0020792 Klebsiella pneumoniae strain SIKP132 141_NODE_82 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STCA00000000.1 Bac0020793 Klebsiella pneumoniae strain SIKP134 143_NODE_78 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STCC00000000.1 Bac0020794 Klebsiella pneumoniae subsp. pneumoniae strain SIKP150 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STCR00000000.1 Bac0020795 Klebsiella pneumoniae strain SIKP152 161_NODE_74 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STCT00000000.1 Bac0020796 Klebsiella pneumoniae strain SIKP155 164_NODE_87 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STCW00000000.1 Bac0020797 Klebsiella pneumoniae subsp. pneumoniae strain SIKP107 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDA00000000.1 Bac0020798 Klebsiella pneumoniae subsp. pneumoniae strain SIKP110 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDB00000000.1 Bac0020799 Klebsiella pneumoniae subsp. pneumoniae strain SIKP111 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDC00000000.1 Bac0020800 Klebsiella pneumoniae subsp. pneumoniae strain SIKP112 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDD00000000.1 Bac0020801 Klebsiella pneumoniae subsp. pneumoniae strain SIKP114 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDF00000000.1 Bac0020802 Klebsiella pneumoniae subsp. pneumoniae strain SIKP116 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDH00000000.1 Bac0020803 Klebsiella pneumoniae subsp. pneumoniae strain SIKP117 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDI00000000.1 Bac0020804 Klebsiella pneumoniae subsp. pneumoniae strain SIKP121 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STDM00000000.1 Bac0020805 Klebsiella pneumoniae strain SIKP123 132_NODE_85 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STDO00000000.1 Bac0020806 Klebsiella pneumoniae strain SIKP186 N22_NODE_81 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STDQ00000000.1 Bac0020807 Klebsiella pneumoniae strain SIKP190 N26_NODE_108 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STDU00000000.1 Bac0020808 Klebsiella pneumoniae subsp. pneumoniae strain SIKP164 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STEJ00000000.1 Bac0020809 Klebsiella pneumoniae subsp. pneumoniae strain SIKP166 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STEL00000000.1 Bac0020810 Klebsiella pneumoniae strain SIKP167 176_NODE_118 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STEM00000000.1 Bac0020811 Klebsiella pneumoniae subsp. pneumoniae strain SIKP168 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STEN00000000.1 Bac0020812 Klebsiella pneumoniae subsp. pneumoniae strain SIKP176 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STEV00000000.1 Bac0020813 Klebsiella pneumoniae strain SIKP178 N14_NODE_90 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STEX00000000.1 Bac0020814 Klebsiella pneumoniae strain SIKP179 N15_NODE_81 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STEY00000000.1 Bac0020815 Klebsiella pneumoniae subsp. pneumoniae strain SIKP181 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 STFA00000000.1 Bac0020816 Klebsiella pneumoniae strain SIKP183 N19_NODE_87 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STFC00000000.1 Bac0020817 Klebsiella pneumoniae strain SIKP184 N20_NODE_82 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STFD00000000.1 Bac0020818 Klebsiella pneumoniae strain SIKP185 N21_NODE_79 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 STFE00000000.1 Bac0020819 Nocardioides sp. GY 10113 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. GY 10113 2569761 STGK00000000.1 Bac0020820 Nocardioides sp. GY 10127 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. GY 10127 2569762 STGL00000000.1 Bac0020821 Acinetobacter baumannii strain SCPM-O-B-8559(3239) Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 STGS00000000.1 Bac0020822 Glycomyces buryatensis strain 18 Bacillati Actinomycetota Actinomycetes Glycomycetales Glycomycetaceae Glycomyces Glycomyces buryatensis 2570927 STGY00000000.1 Bac0020823 Staphylococcus aureus strain 23 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 SUKK00000000.1 Bac0020824 Staphylococcus haemolyticus strain 24 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1283 SUKL00000000.1 Bac0020825 Staphylococcus aureus strain 48 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 SUKQ00000000.1 Bac0020826 Staphylococcus haemolyticus strain 1 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus Positive Cocci No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 1283 SUKV00000000.1 Bac0020827 Bacillus paralicheniformis strain UBBLI-30 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus paralicheniformis 1648923 SULF00000000.1 Bac0020828 Shimia litoralis strain CL-ES2 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Shimia Shimia litoralis 420403 SULI00000000.1 Bac0020829 Klebsiella pneumoniae strain 1812100012 lung abscess API 5205773 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SULO00000000.1 Bac0020830 Klebsiella pneumoniae strain 1812040001 lung abscess API 5205773 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SULQ00000000.1 Bac0020831 Klebsiella pneumoniae strain 1811260006 lung abscess API 7215773 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SULS00000000.1 Bac0020832 Klebsiella pneumoniae strain 1811130034 cecum API 5215773 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SULV00000000.1 Bac0020833 Klebsiella pneumoniae strain 1811130034 blood API 5205773 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SULW00000000.1 Bac0020834 Klebsiella pneumoniae strain 1811130032 blood API 5215773 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SULY00000000.1 Bac0020835 Sphingobacterium olei strain HAL-9 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium olei 2571155 SUME00000000.1 Bac0020836 Lactobacillus amylovorus subsp. animalium strain S60 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus amylovorus Positive Rod No 1 1 Anaerobe Mesophilic Multiple Free living Chains 3378536 SUMN00000000.1 Bac0020837 Lentilactobacillus buchneri strain S58 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri Positive Rod Facultative anaerobe Mesophilic Multiple Free living Chains 1581 SUMP00000000.1 Bac0020838 Lentilactobacillus buchneri strain S53 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri Positive Rod Facultative anaerobe Mesophilic Multiple Free living Chains 1581 SUMQ00000000.1 Bac0020839 Lentilactobacillus buchneri strain S51 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus buchneri Positive Rod Facultative anaerobe Mesophilic Multiple Free living Chains 1581 SUMR00000000.1 Bac0020840 Lacticaseibacillus paracasei strain S49 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains 1597 SUMT00000000.1 Bac0020841 Staphylococcus chromogenes strain S48 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus chromogenes bovine milk; milk; TA; teat apices 46126 SUMU00000000.1 Bac0020842 Pontimicrobium aquaticum strain CAU 1491 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Pontimicrobium Pontimicrobium aquaticum 2565367 SUPL00000000.1 Bac0020843 Bacillus amyloliquefaciens strain HMA-LCI Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus amyloliquefaciens Positive Rod Yes 1 1 Aerobe Mesophilic Soil Free living Sporulating 1390 SUPO00000000.1 Bac0020844 Neisseria gonorrhoeae strain LRRBGS_0740 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SUQV00000000.1 Bac0020845 Neisseria gonorrhoeae strain LRRBGS_0741 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SUQW00000000.1 Bac0020846 Neisseria gonorrhoeae strain LRRBGS_0742 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SUQX00000000.1 Bac0020847 Neisseria gonorrhoeae strain GCGS0745 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SUQY00000000.1 Bac0020848 Neisseria gonorrhoeae strain LRRBGS_0750 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 SURI00000000.1 Bac0020849 Candidatus Accumulibacter phosphatis strain Bin19 Pseudomonadati Pseudomonadota Betaproteobacteria Candidatus Accumulibacter Candidatus Accumulibacter phosphatis 327160 SWAD00000000.1 Bac0020850 Enterococcus lactis strain UBEF-41 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus lactis Gram-positive sphere non-motile gut non-spore-forming 357441 SWBS00000000.1 Bac0020851 Desulfopila sp. IMCC35006 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfopila Desulfopila sp. IMCC35006 2569542 SWCM00000000.1 Bac0020852 Enterobacter hormaechei strain MDMC76 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei Negative Facultative anaerobe Mesophilic HostAssociated Free living 158836 SWCU00000000.2 Bac0020853 Bacillus paranthracis strain ICIS-279 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus paranthracis Positive Rod No 1 Facultative Anaerobe 37 Chemoheterotroph Mesophilic Multiple Chains Sporulating 2026186 SWDD00000000.1 Bac0020854 Streptococcus mitis strain ColumbLawn Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis Positive Cocci No 1 1 Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating 28037 SWFJ00000000.1 Bac0020855 Pseudalkalibacillus hwajinpoensis strain Y2 Bacillati Bacillota Bacilli Caryophanales Guptibacillaceae Guptibacillus Guptibacillus hwajinpoensis 208199 SWFM00000000.1 Bac0020856 Trinickia terrae strain 7GSK02 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia terrae 2571161 SWJE00000000.1 Bac0020857 Rhodobacter capsulatus strain SP108 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Rhodobacter Rhodobacter capsulatus Negative Rod Yes 1 Facultative anaerobe 30 Chemoheterotroph Mesophilic Aquatic Nonsporulating 1061 SWJZ00000000.1 Bac0020858 Azotobacter chroococcum strain P208 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Azotobacter Azotobacter chroococcum cotton root soil; rhizosphere soil 353 SWKB00000000.1 Bac0020859 Campylobacter coli strain B05 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 SWLU00000000.1 Bac0020860 Campylobacter coli strain B63 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 SWLW00000000.1 Bac0020861 Escherichia coli strain SIEC035 36_NODE_137 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SWMB00000000.1 Bac0020862 Klebsiella pneumoniae strain SIKP010 11_NODE_87 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SWMC00000000.1 Bac0020863 Escherichia coli strain SIEC015 16_NODE_101 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SWME00000000.1 Bac0020864 Escherichia coli strain SIEC018 19_NODE_118 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SWMG00000000.1 Bac0020865 Escherichia coli strain SIEC025 26_NODE_81 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SWMI00000000.1 Bac0020866 Klebsiella pneumoniae strain SIKP083 91_NODE_71 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SWMK00000000.1 Bac0020867 Escherichia coli strain SIEC109 118_NODE_121 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SWMN00000000.1 Bac0020868 Salmonella enterica subsp. enterica serovar Heidelberg strain 2581 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 611 SWMW00000000.1 Bac0020869 Vibrio alginolyticus strain 10N.261.52.A3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio alginolyticus negative Yes facultative anaerobe 30 Marine 663 SYUR00000000.1 Bac0020870 Vibrio kanaloae strain 10N.261.48.E7 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio kanaloae 170673 SYUU00000000.1 Bac0020871 Vibrio lentus strain 10N.222.55.E5 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus 136468 SYUY00000000.1 Bac0020872 Vibrio sp. F13 strain 10N.222.55.B10 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. F13 2070777 SYVC00000000.1 Bac0020873 Vibrio sp. F13 strain 10N.222.55.A2 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. F13 2070777 SYVD00000000.1 Bac0020874 Vibrio sp. F13 strain 10N.222.55.A11 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. F13 2070777 SYVE00000000.1 Bac0020875 Vibrio sp. F13 strain 10N.222.54.B8 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. F13 2070777 SYVF00000000.1 Bac0020876 Vibrio kanaloae strain 10N.222.51.B7 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio kanaloae 170673 SYVH00000000.1 Bac0020877 Vibrio sp. F13 strain 10N.222.48.F5 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio sp. F13 2070777 SYVL00000000.1 Bac0020878 Vibrio lentus strain 10N.222.46.C3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio lentus 136468 SYVR00000000.1 Bac0020879 Vibrio tasmaniensis strain 10N.222.45.A8 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tasmaniensis 212663 SYVV00000000.1 Bac0020880 Vibrio tasmaniensis strain 10N.222.45.A5 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tasmaniensis 212663 SYVW00000000.1 Bac0020881 Vibrio tasmaniensis strain 10N.222.45.A4 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tasmaniensis 212663 SYVX00000000.1 Bac0020882 Vibrio tasmaniensis strain 10N.222.45.A3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tasmaniensis 212663 SYVY00000000.1 Bac0020883 Vibrio tasmaniensis strain 10N.222.45.A2 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tasmaniensis 212663 SYVZ00000000.1 Bac0020884 Klebsiella variicola strain ST681 102 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella variicola Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 244366 SZND00000000.1 Bac0020885 Klebsiella pneumoniae strain ST15 115 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 SZNE00000000.1 Bac0020886 Brevibacillus antibioticus strain TGS2-1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus antibioticus 2570228 SZNK00000000.1 Bac0020887 Peribacillus simplex strain I6 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Peribacillus Peribacillus simplex positive Rod aerobic warm arid soils 1478 SZNS00000000.1 Bac0020888 Bacillus cereus strain I189 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SZNU00000000.1 Bac0020889 Bacillus cereus strain I176 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SZNV00000000.1 Bac0020890 Bacillus cereus strain !175 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SZNW00000000.1 Bac0020891 Bacillus cereus strain I62 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SZOG00000000.1 Bac0020892 Bacillus cereus strain I32 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SZOH00000000.1 Bac0020893 Bacillus cereus strain I16 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SZOI00000000.1 Bac0020894 Bacillus cereus strain I148 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 SZOJ00000000.1 Bac0020895 Campylobacter jejuni strain XZJ48 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 SZOP00000000.1 Bac0020896 Lysinibacillus mangiferihumi strain CCTCC AB 2010389 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus mangiferihumi 1130819 SZPU00000000.1 Bac0020897 Lysinibacillus varians strain NBRC 109424 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus varians 1145276 SZPV00000000.1 Bac0020898 Sulfurimonas crateris strain SN118 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas crateris 2574727 SZPX00000000.1 Bac0020899 Ilyomonas limi strain 17mud1-8 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Ilyomonas Ilyomonas limi 2575867 SZQL00000000.1 Bac0020900 Mycobacterium tuberculosis strain TBR030 tbr030C5752 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1773 SZTR00000000.1 Bac0020901 Mycobacterium tuberculosis strain TBR038 tbr038C10312 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1773 SZTS00000000.1 Bac0020902 Mycobacterium tuberculosis strain TBR043 tbr043C5098 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 1773 SZTT00000000.1 Bac0020903 Escherichia coli strain Broiler parent109 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 SZTY00000000.1 Bac0020904 Luteimonas gilva strain H23 H23_4 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas gilva 2572684 SZUA00000000.1 Bac0020905 Rhizobiaceae bacterium LC148 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobiaceae bacterium LC148 1120689 SZVV00000000.1 Bac0020906 Citrobacter sp. wls716 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls716 2576420 SZWX00000000.1 Bac0020907 Citrobacter sp. wls715 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls715 2576421 SZWY00000000.1 Bac0020908 Citrobacter sp. wls714 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls714 2576422 SZWZ00000000.1 Bac0020909 Citrobacter sp. wls713 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls713 2576423 SZXA00000000.1 Bac0020910 Citrobacter sp. wls712 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls712 2576424 SZXB00000000.1 Bac0020911 Citrobacter sp. wls711 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls711 2576425 SZXC00000000.1 Bac0020912 Citrobacter sp. wls708 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls708 2576427 SZXE00000000.1 Bac0020913 Citrobacter sp. wls706 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls706 2576429 SZXG00000000.1 Bac0020914 Citrobacter sp. wls621 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls621 2576430 SZXH00000000.1 Bac0020915 Citrobacter sp. wls620 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter sp. wls620 2576431 SZXI00000000.1 Bac0020916 Nakamurella flava strain N5BH11 Bacillati Actinomycetota Actinomycetes Nakamurellales Nakamurellaceae Nakamurella Nakamurella flava 2576308 SZZH00000000.1 Bac0020917 Bradyrhizobium elkanii strain Semia 938 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium elkanii 29448 SZZP00000000.1 Bac0020918 Bacillus cereus strain NCTC6474 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 UAPX00000000.1 Bac0020919 Bacillus tequilensis strain NCTC13306 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus tequilensis Gram-positive rod aerobic 45 thermophilic spore-forming 227866 UAQB00000000.1 Bac0020920 Burkholderia cepacia strain NCTC10661 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia cepacia Negative Microaerophile 292 UARD00000000.1 Bac0020921 Capnocytophaga ochracea strain NCTC11546 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles Human 1018 UARG00000000.1 Bac0020922 Escherichia coli strain NCTC11126 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UARS00000000.1 Bac0020923 Escherichia coli strain NCTC8009 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UARW00000000.1 Bac0020924 Escherichia coli strain NCTC9073 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UASD00000000.1 Bac0020925 Kocuria kristinae strain NCTC11038 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia kristinae positive Coccus skin 37923 UASQ00000000.1 Bac0020926 Morganella morganii strain NCTC12358 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Morganella Morganella morganii Negative Rod Facultative anaerobe mesophilic natural environment; sewage 582 UASZ00000000.1 Bac0020927 Mycobacterium xenopi strain NCTC10042 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium xenopi 1789 UATA00000000.1 Bac0020928 Peptoniphilus harei strain NCTC13076 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus harei Positive Coccus No Anaerobe 37 Chemoheterotroph Mesophilic Host gut Nonsporulating 54005 UATM00000000.1 Bac0020929 Providencia rettgeri strain NCTC7476 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rettgeri Negative Rod Yes 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating Human 587 UAUG00000000.1 Bac0020930 Raoultella planticola strain NCTC9528 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella planticola Negative Rod No 1 Facultative anaerobe 37 Chemoheterotroph Mesophilic Multiple Nonsporulating 575 UAUJ00000000.1 Bac0020931 Serratia quinivorans strain NCTC13194 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia quinivorans 137545 UAUM00000000.1 Bac0020932 Staphylococcus aureus strain NCTC7878 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 UAUX00000000.1 Bac0020933 Streptococcus agalactiae strain NCTC8181 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Positive Cocci No 1 1 Facultative anaerobe 37 Mesophilic HostAssociated Free living Chains - Pairs 1311 UAVB00000000.1 Bac0020934 Streptomyces griseus strain NCTC13033 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces griseus soil 1911 UAVD00000000.1 Bac0020935 Citrobacter freundii strain NCTC13639 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter freundii Negative Rod Facultative anaerobe hospital sewage; intestinal tract; sewage; soil; surface waters Nonsporulating 546 UAVQ00000000.1 Bac0020936 Capnocytophaga ochracea strain NCTC11545 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles Human 1018 UAVS00000000.1 Bac0020937 Cedecea neteri strain NCTC12120 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cedecea Cedecea neteri 158822 UAVU00000000.1 Bac0020938 Citrobacter koseri strain NCTC10786 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter koseri Negative Yes 1 2 Facultatively anaerobe Mesophilic Multiple Free living 545 UAVY00000000.1 Bac0020939 Helicobacter fennelliae strain NCTC13102 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter fennelliae 215 UAWL00000000.1 Bac0020940 Escherichia coli strain VREC0376 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCTY00000000.1 Bac0020941 Escherichia coli strain VREC0406 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCVA00000000.1 Bac0020942 Escherichia coli strain VREC0287 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCWC00000000.1 Bac0020943 Escherichia coli strain VREC0290 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCWO00000000.1 Bac0020944 Escherichia coli strain VREC0353 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCXQ00000000.1 Bac0020945 Escherichia coli strain VREC0506 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCYG00000000.1 Bac0020946 Escherichia coli strain VREC0386 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCYS00000000.1 Bac0020947 Escherichia coli strain VREC0307 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCZG00000000.1 Bac0020948 Escherichia coli strain VREC0385 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCZX00000000.1 Bac0020949 Escherichia coli strain VREC0374 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UCZZ00000000.1 Bac0020950 Escherichia coli strain VRES0683 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UDIE00000000.1 Bac0020951 Aequorivita lipolytica strain CIP107455T Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita lipolytica 153267 UEFO00000000.1 Bac0020952 Aequorivita sp. CIP111184 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita sp. CIP111184 2211356 UEFQ00000000.1 Bac0020953 Mycobacterium shimoidei strain P7336 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium shimoidei aerobic 29313 UEGW00000000.1 Bac0020954 Branchiibius hedensis strain DSM 22951 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Branchiibius Branchiibius hedensis 672460 UESZ00000000.1 Bac0020955 Georgenia satyanarayanai strain CGMCC 1.10826 Bacillati Actinomycetota Actinomycetes Allobogoriellales Allobogoriellaceae Georgenia Georgenia satyanarayanai Gram-positive ovoid aerobic 37 mesophilic 860221 UETB00000000.1 Bac0020956 thiotrophic endosymbiont of Bathymodiolus puteoserpentis Pseudomonadati Pseudomonadota Gammaproteobacteria thiotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) 343240 UEXF00000000.1 Bac0020957 Klebsiella pneumoniae strain 4300STDY6470422 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UFEU00000000.1 Bac0020958 Klebsiella pneumoniae strain 4300STDY6470471 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UFGU00000000.1 Bac0020959 Acinetobacter baumannii strain 4300STDY7045733 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 UFJW00000000.1 Bac0020960 Acinetobacter baumannii strain 4300STDY7045813 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 UFMN00000000.1 Bac0020961 Acinetobacter baumannii strain 4300STDY7045823 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 UFMQ00000000.1 Bac0020962 Achromobacter sp. LMG 30378 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter veterisilvae 2069367 UFQC00000000.1 Bac0020963 Rhodopseudomonas pentothenatexigens strain JA575 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodopseudomonas Rhodopseudomonas pentothenatexigens rod anaerobic 37 mesophilic 999699 UFQQ00000000.1 Bac0020964 Acinetobacter junii strain NCTC12153 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter junii Negative Aerobe 40215 UFRL00000000.1 Bac0020965 [Actinobacillus] rossii strain NCTC10801 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae [Actinobacillus] rossii 123820 UFRQ00000000.1 Bac0020966 Acinetobacter haemolyticus strain NCTC10306 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter haemolyticus Negative Aerobe 29430 UFRT00000000.1 Bac0020967 Actinobacillus seminis strain NCTC10851 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus seminis 722 UFSB00000000.1 Bac0020968 Acinetobacter lwoffii strain NCTC5867 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lwoffii Negative Rod Yes Aerobe oropharynx; skin 28090 UFSE00000000.1 Bac0020969 Alysiella crassa strain NCTC10283 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Alysiella Alysiella crassa 153491 UFSO00000000.1 Bac0020970 Avibacterium paragallinarum strain NCTC10926 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Avibacterium Avibacterium paragallinarum negative Rod Nonsporulating 728 UFSW00000000.1 Bac0020971 Bacteroides eggerthii strain NCTC11155 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides eggerthii Negative Anaerobe human gut microbiota 28111 UFSX00000000.1 Bac0020972 Bacteroides fragilis strain NCTC9343 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis Negative Rod No 1 2 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Singles 272559 UFTH00000000.1 Bac0020973 Scardovia inopinata strain NCTC12937 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Scardovia Scardovia inopinata Positive Anaerobe 78259 UFTI00000000.1 Bac0020974 Bergeyella zoohelcum strain NCTC11661 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Bergeyella Bergeyella zoohelcum 1015 UFTJ00000000.1 Bac0020975 Brachyspira pilosicoli strain NCTC13046 Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira pilosicoli Negative Anaerobe 52584 UFTN00000000.1 Bac0020976 Campylobacter ureolyticus strain NCTC10941 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus 827 UFUU00000000.1 Bac0020977 Cardiobacterium valvarum strain NCTC13294 Pseudomonadati Pseudomonadota Gammaproteobacteria Cardiobacteriales Cardiobacteriaceae Cardiobacterium Cardiobacterium valvarum negative 194702 UFUW00000000.1 Bac0020978 Campylobacter lari strain NCTC12894 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari Negative Spirilla No 1 2 Microaerophilic Mesophilic Multiple Free living Chains - Singles 201 UFUX00000000.1 Bac0020979 Campylobacter upsaliensis strain NCTC12264 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter upsaliensis negative 28080 UFUZ00000000.1 Bac0020980 Campylobacter upsaliensis strain NCTC11540 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter upsaliensis 28080 UFVA00000000.1 Bac0020981 Campylobacter jejuni strain NCTC13105 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 UFVB00000000.1 Bac0020982 Campylobacter sputorum biovar sputorum strain NCTC12475 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sputorum microaerophile 32024 UFVD00000000.1 Bac0020983 Capnocytophaga granulosa strain NCTC12948 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga granulosa negative facultative aerobe/anaerobe / microaerophile 45242 UFVE00000000.1 Bac0020984 Campylobacter jejuni subsp. doylei strain NCTC12208 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 32021 UFVF00000000.1 Bac0020985 Citrobacter amalonaticus strain NCTC10805 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter amalonaticus Negative Facultative anaerobe gut 35703 UFVN00000000.1 Bac0020986 Chryseobacterium carnipullorum strain NCTC13533 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium carnipullorum 1124835 UFVQ00000000.1 Bac0020987 Chryseobacterium indoltheticum strain NCTC13560 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indoltheticum dairy products; urban sewage sludge 254 UFVS00000000.1 Bac0020988 Citrobacter youngae strain NCTC13708 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter youngae negative 133448 UFWE00000000.1 Bac0020989 Citrobacter koseri strain NCTC10810 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter koseri Negative Yes 1 2 Facultatively anaerobe Mesophilic Multiple Free living 545 UFWJ00000000.1 Bac0020990 Corynebacterium diphtheriae strain NCTC10838 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae Positive Rod No 1 1 Aerobe 37 Mesophilic Multiple 1717 UFWY00000000.1 Bac0020991 Clostridium perfringens strain NCTC10578 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles - Chains 1502 UFXA00000000.1 Bac0020992 [Clostridium] sphenoides strain NCTC507 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lacrimispora Lacrimispora sphenoides 29370 UFXF00000000.1 Bac0020993 Corynebacterium jeikeium strain NCTC11913 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium Positive Rod No 1 1 Facultative aerobe Chemoorganotroph Mesophilic Multiple Free living Singles 38289 UFXO00000000.1 Bac0020994 Escherichia coli strain NCTC10767 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UFXW00000000.1 Bac0020995 Cronobacter universalis strain NCTC9529 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter universalis Gram-negative rod non-motile 37 mesophilic non-spore-forming 1074000 UFYH00000000.1 Bac0020996 Escherichia coli strain NCTC9037 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UFYM00000000.1 Bac0020997 Escherichia coli strain NCTC10082 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UFZA00000000.1 Bac0020998 Escherichia coli strain NCTC10418 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UFZQ00000000.1 Bac0020999 Escherichia coli strain NCTC7928 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGAB00000000.1 Bac0021000 Escherichia coli strain NCTC9007 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGBC00000000.1 Bac0021001 Escherichia coli strain NCTC11341 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGBT00000000.1 Bac0021002 Escherichia coli strain NCTC8621 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGBW00000000.1 Bac0021003 Escherichia coli strain NCTC9050 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGBX00000000.1 Bac0021004 Escherichia coli strain NCTC10865 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGCD00000000.1 Bac0021005 Escherichia coli strain NCTC11022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGCG00000000.1 Bac0021006 Escherichia coli strain NCTC13127 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGCM00000000.1 Bac0021007 Escherichia coli strain NCTC8985 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGCO00000000.1 Bac0021008 Escherichia coli strain NCTC9058 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGCT00000000.1 Bac0021009 Escherichia coli strain NCTC9081 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGCV00000000.1 Bac0021010 Escherichia coli strain NCTC9117 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGDC00000000.1 Bac0021011 Escherichia coli strain NCTC8179 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGEB00000000.1 Bac0021012 Escherichia coli strain NCTC9075 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGEM00000000.1 Bac0021013 Escherichia coli strain NCTC10429 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGEX00000000.1 Bac0021014 Escherichia coli strain NCTC8500 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGFG00000000.1 Bac0021015 Escherichia coli strain NCTC9434 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGFV00000000.1 Bac0021016 Escherichia coli strain NCTC9119 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGGG00000000.1 Bac0021017 Escherichia coli strain NCTC9706 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UGGJ00000000.1 Bac0021018 Exiguobacterium aurantiacum strain NCTC13163 Bacillati Bacillota Bacilli Caryophanales Family_XII Exiguobacterium Exiguobacterium aurantiacum aerobic 29 mesophilic 33987 UGGP00000000.1 Bac0021019 Fluoribacter gormanii strain NCTC11401 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Fluoribacter Fluoribacter gormanii 464 UGGV00000000.1 Bac0021020 Gallibacterium anatis strain NCTC11413 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Gallibacterium Gallibacterium anatis negative 750 UGGZ00000000.1 Bac0021021 Grimontia hollisae strain NCTC11645 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Grimontia Grimontia hollisae Negative Facultative anaerobe 673 UGHD00000000.1 Bac0021022 Glaesserella parasuis strain NCTC4557 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Glaesserella Glaesserella parasuis Negative Rod No 1 2 Aerobe; facultative anaerobe Mesophilic HostAssociated Free living Animal 738 UGHL00000000.1 Bac0021023 Helicobacter pylori strain NCTC13207 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 UGHN00000000.1 Bac0021024 Hafnia alvei strain NCTC8535 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Hafnia Hafnia alvei Negative Rod Facultative anaerobe hot spring 569 UGHO00000000.1 Bac0021025 Iodobacter fluviatilis strain NCTC11159 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Iodobacter Iodobacter fluviatilis 537 UGHR00000000.1 Bac0021026 Helicobacter cinaedi strain NCTC12221 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi Negative Microaerophile intestinal resident; wastewater treatment plants 213 UGHZ00000000.1 Bac0021027 Enterococcus durans strain NCTC8129 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus durans Positive Cocci Facultative anaerobe influent; wastewater treatment plant Human 53345 UGIF00000000.1 Bac0021028 Enterococcus casseliflavus strain NCTC12362 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe intestines 37734 UGIQ00000000.1 Bac0021029 Enterococcus casseliflavus strain NCTC12361 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus casseliflavus Positive Cocci Facultative anaerobe intestines 37734 UGJD00000000.1 Bac0021030 Kingella potus strain NCTC13336 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella potus microaerophile 265175 UGJJ00000000.1 Bac0021031 Helicobacter pylori strain NCTC13094 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 UGJP00000000.1 Bac0021032 Klebsiella variicola strain NCTC9177 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella variicola Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles Nonsporulating 244366 UGKR00000000.1 Bac0021033 Klebsiella pneumoniae strain NCTC13443 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UGKT00000000.1 Bac0021034 Citrobacter koseri strain NCTC5055 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter koseri Negative Yes 1 2 Facultatively anaerobe Mesophilic Multiple Free living 545 UGKY00000000.1 Bac0021035 Klebsiella pneumoniae strain NCTC9637 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UGLB00000000.1 Bac0021036 Klebsiella pneumoniae strain NCTC9661 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UGLQ00000000.1 Bac0021037 Klebsiella pneumoniae subsp. ozaenae strain NCTC10313 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 574 UGLW00000000.1 Bac0021038 Klebsiella pneumoniae subsp. pneumoniae strain NCTC9504 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 UGMA00000000.1 Bac0021039 Klebsiella pneumoniae strain NCTC5053 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UGMN00000000.1 Bac0021040 Klebsiella pneumoniae subsp. rhinoscleromatis strain NCTC5046 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 39831 UGMQ00000000.1 Bac0021041 Klebsiella pneumoniae strain NCTC9617 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UGNC00000000.1 Bac0021042 Kocuria rosea strain NCTC7528 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rosea positive Coccus dust; indoor dust; Iranian Ab-e-Siah hot springs; Iranian hot spring; skin Pairs 1275 UGNO00000000.1 Bac0021043 Lactobacillus brevis strain NCTC13386 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Levilactobacillus Levilactobacillus brevis Positive Rod Yes 1 1 Facultative anaerobe 25 Mesophilic Multiple Free living Chains - Singles 1580 UGNS00000000.1 Bac0021044 Legionella feeleii strain NCTC11978 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella feeleii 453 UGNY00000000.1 Bac0021045 Legionella longbeachae strain NCTC11477 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella longbeachae negative microaerophile active sludge basin; active sludge basins; cooling towers; drinking and cooling water systems; Fresh water; natural surface water; sludge; soil; waste water aeration ponds; waste water basins; waste water systems; water 450 UGOF00000000.1 Bac0021046 Legionella wadsworthii strain NCTC11532 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella wadsworthii microaerophile 28088 UGPB00000000.1 Bac0021047 Megamonas hypermegale strain NCTC10571 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas hypermegale 158847 UGPP00000000.1 Bac0021048 Mobiluncus mulieris strain NCTC11497 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus mulieris negative Curved rod Yes 1 anaerobic uterus; vaginal; vaginal environment; vaginal space 2052 UGPX00000000.1 Bac0021049 Moraxella atlantae strain NCTC11091 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Faucicola Faucicola atlantae 34059 UGQA00000000.1 Bac0021050 Moraxella equi strain NCTC11012 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella equi 60442 UGQF00000000.1 Bac0021051 Mycolicibacterium aichiense strain NCTC10820 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium aichiense 1799 UGQK00000000.1 Bac0021052 Mycobacterium gilvum strain NCTC10742 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium gilvum Positive Rod No 1 1 Aerobic 37 Chemoorganotroph Mesophilic Terrestrial Free living Singles 1804 UGQM00000000.1 Bac0021053 Neisseria elongata strain NCTC10660 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria elongata negative 495 UGQW00000000.1 Bac0021054 Neisseria lactamica strain NCTC10618 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria lactamica Negative Cocci No 1 35 Chemoheterotroph Mesophilic Multiple Nonsporulating 486 UGRN00000000.1 Bac0021055 Neisseria zoodegmatis strain NCTC12229 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria zoodegmatis 326523 UGRS00000000.1 Bac0021056 Nocardia africana strain NCTC13184 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia africana aerobic 29 mesophilic 134964 UGRU00000000.1 Bac0021057 Oligella ureolytica strain NCTC11997 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Oligella Oligella ureolytica Gram-negative rod motile microaerophile 90244 UGSB00000000.1 Bac0021058 Pandoraea pulmonicola strain NCTC13159 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea pulmonicola Gram-negative non-spore-forming 93221 UGSJ00000000.1 Bac0021059 Pannonibacter phragmitetus strain NCTC13350 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Pannonibacter Pannonibacter phragmitetus 121719 UGSK00000000.1 Bac0021060 [Pasteurella] mairii strain NCTC10699 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae [Pasteurella] mairii 757 UGSS00000000.1 Bac0021061 Pasteurella multocida strain NCTC10722 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living 747 UGST00000000.1 Bac0021062 Plesiomonas shigelloides strain NCTC10363 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Plesiomonas Plesiomonas shigelloides Negative Vibrio Yes 1 Aerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 703 UGTC00000000.1 Bac0021063 Porphyromonas macacae strain NCTC11632 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas macacae gingival crevicular fluid; oral cavity; subgingival plaque 28115 UGTF00000000.1 Bac0021064 Pluralibacter gergoviae strain NCTC11434 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pluralibacter Pluralibacter gergoviae negative Rod 61647 UGTG00000000.1 Bac0021065 Prevotella denticola strain NCTC13067 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella denticola tooth 28129 UGTM00000000.1 Bac0021066 Prevotella pallens strain NCTC13043 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella pallens Negative Anaerobe saliva 60133 UGTP00000000.1 Bac0021067 Proteus mirabilis strain NCTC11938 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus mirabilis Negative Rod No 1 2 Aerobe 37 Mesophilic HostAssociated Free living Nonsporulating 584 UGTS00000000.1 Bac0021068 Pasteurella canis strain NCTC11621 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella canis microaerophile 753 UGTV00000000.1 Bac0021069 Proteus vulgaris strain NCTC10376 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Proteus Proteus vulgaris digestive tract; handsets of telephone booths; meat; milk 585 UGTW00000000.1 Bac0021070 Providencia rustigianii strain NCTC12026 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia rustigianii negative 158850 UGUA00000000.1 Bac0021071 Pseudoalteromonas nigrifaciens strain NCTC10691 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas nigrifaciens 28109 UGUD00000000.1 Bac0021072 Pseudomonas putida strain NCTC7914 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida Negative Rod Yes 1 2 Facultative Heterotroph Mesophilic Soil - Wastewater Free living Singles Nonsporulating 303 UGUY00000000.1 Bac0021073 Pseudomonas stutzeri strain NCTC10473 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas stutzeri Negative Rod No 1 2 Aerobe Heterotroph Mesophilic HostAssociated Free living Singles 316 UGVA00000000.1 Bac0021074 Salmonella enterica strain NCTC6385 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 UGWV00000000.1 Bac0021075 Salmonella enterica subsp. arizonae strain NCTC7295 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59203 UGWZ00000000.1 Bac0021076 Salmonella enterica subsp. arizonae strain NCTC7304 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59203 UGXD00000000.1 Bac0021077 Salmonella enterica subsp. diarizonae strain NCTC10060 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59204 UGXH00000000.1 Bac0021078 Salmonella enterica subsp. enterica strain NCTC5798 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 59201 UGXK00000000.1 Bac0021079 Serratia quinivorans strain NCTC11544 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia quinivorans 137545 UGYN00000000.1 Bac0021080 Shewanella morhuae strain NCTC10736 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella morhuae 365591 UGYV00000000.1 Bac0021081 Sphingobacterium multivorum strain NCTC11034 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium multivorum roots 28454 UGYX00000000.1 Bac0021082 Streptococcus downei strain NCTC11391 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus downei microaerophile 764290 UHFA00000000.1 Bac0021083 Streptococcus constellatus strain NCTC11325 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus constellatus Positive Cocci Facultative anaerobe Animal 76860 UHFC00000000.1 Bac0021084 Streptococcus equi subsp. equi strain NCTC12092 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Pairs-Chains Nonsporulating 148942 UHFF00000000.1 Bac0021085 Streptococcus dysgalactiae subsp. equisimilis strain NCTC11564 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae Positive Cocci No 1 1 Facultative Mesophilic HostAssociated Free living Chains-Singles Nonsporulating 119602 UHFO00000000.1 Bac0021086 Streptococcus infantarius strain NCTC13760 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantarius microaerophile 102684 UHFP00000000.1 Bac0021087 Streptococcus massiliensis strain NCTC13765 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus massiliensis Gram-positive sphere non-motile 37 mesophilic non-spore-forming 313439 UHFR00000000.1 Bac0021088 Streptococcus milleri strain NCTC11063 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus milleri 33040 UHFT00000000.1 Bac0021089 Streptococcus viridans strain NCTC1080 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus viridans 78535 UHHS00000000.1 Bac0021090 Yersinia frederiksenii strain NCTC11470 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia frederiksenii environment; food 29484 UHJA00000000.1 Bac0021091 Yersinia pseudotuberculosis strain NCTC8580 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia pseudotuberculosis Negative Rod Yes 1 2 Facultative anaerobe 28 Heterotroph Mesophilic Multiple Free living Singles 633 UHJC00000000.1 Bac0021092 Yersinia ruckeri strain NCTC10476 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia ruckeri 29486 UHJG00000000.1 Bac0021093 Yokenella regensburgei strain NCTC11966 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Yokenella Yokenella regensburgei 158877 UHJH00000000.1 Bac0021094 Ruminococcaceae bacterium strain R-25 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Oscillospiraceae bacterium Uncharacterized Obligate anaerobe 2485925 UHJI00000000.1 Bac0021095 [Eubacterium] contortum strain NLAE-zl-C134 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Faecalicatena Faecalicatena contorta No 1 Chemoheterotroph Animal Intestinal Microflora 39482 UHJJ00000000.1 Bac0021096 Fibrobacter succinogenes strain HM2 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes Negative Rod No 1 2 Anaerobic Mesophilic HostAssociated Free living Singles 833 UHJL00000000.1 Bac0021097 Actinobacillus pleuropneumoniae strain NCTC11407 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae Negative Rod No 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Symbiotic Chains - Pairs - Singles 715 UIFY00000000.1 Bac0021098 Campylobacter coli strain NCTC11366 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 UIGM00000000.1 Bac0021099 Escherichia coli strain VREC0288 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UINN00000000.1 Bac0021100 Escherichia coli strain VRES0562 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 UINR00000000.1 Bac0021101 Shigella flexneri strain 4028STDY6275090 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri Negative Rod Yes 1 2 Facultative 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs-Singles Nonsporulating 623 UIPE00000000.1 Bac0021102 Klebsiella pneumoniae strain 4300STDY6636980 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIQY00000000.1 Bac0021103 Klebsiella pneumoniae strain 4300STDY6470419 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIRF00000000.1 Bac0021104 Klebsiella pneumoniae strain 4300STDY6470477 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIRG00000000.1 Bac0021105 Acinetobacter baumannii strain 4300STDY7045746 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 UIRJ00000000.1 Bac0021106 Klebsiella pneumoniae strain EuSCAPE_GR030 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIRL00000000.1 Bac0021107 Klebsiella pneumoniae strain EuSCAPE_GR027 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIRM00000000.1 Bac0021108 Klebsiella pneumoniae strain EuSCAPE_ES265 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIRO00000000.1 Bac0021109 Klebsiella pneumoniae strain EuSCAPE_GR032 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIRX00000000.1 Bac0021110 Klebsiella pneumoniae strain EuSCAPE_GR053 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIRY00000000.1 Bac0021111 Klebsiella pneumoniae strain EuSCAPE_GR070 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UISA00000000.1 Bac0021112 Klebsiella pneumoniae strain EuSCAPE_GR071 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UISF00000000.1 Bac0021113 Klebsiella pneumoniae strain EuSCAPE_GR064 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UISG00000000.1 Bac0021114 Klebsiella pneumoniae strain EuSCAPE_GR077 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UISI00000000.1 Bac0021115 Klebsiella pneumoniae strain EuSCAPE_ES187 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UISK00000000.1 Bac0021116 Klebsiella pneumoniae strain EuSCAPE_ES191 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UISQ00000000.1 Bac0021117 Klebsiella pneumoniae strain EuSCAPE_ES128 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UISS00000000.1 Bac0021118 Klebsiella pneumoniae strain EuSCAPE_ES137 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UITF00000000.1 Bac0021119 Klebsiella pneumoniae strain EuSCAPE_ES133 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UITI00000000.1 Bac0021120 Klebsiella pneumoniae strain EuSCAPE_ES172 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UITJ00000000.1 Bac0021121 Klebsiella pneumoniae strain EuSCAPE_ES150 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UITM00000000.1 Bac0021122 Klebsiella pneumoniae strain EuSCAPE_GR055 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UITU00000000.1 Bac0021123 Klebsiella pneumoniae strain EuSCAPE_GR078 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UITW00000000.1 Bac0021124 Klebsiella pneumoniae strain EuSCAPE_GR135 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIUR00000000.1 Bac0021125 Klebsiella pneumoniae strain EuSCAPE_GR151 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIUV00000000.1 Bac0021126 Klebsiella pneumoniae strain EuSCAPE_RS007 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIUX00000000.1 Bac0021127 Klebsiella pneumoniae strain EuSCAPE_GR153 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVB00000000.1 Bac0021128 Klebsiella pneumoniae strain EuSCAPE_GR154 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVD00000000.1 Bac0021129 Klebsiella pneumoniae strain EuSCAPE_ES107 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVF00000000.1 Bac0021130 Klebsiella pneumoniae strain EuSCAPE_GR098 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVO00000000.1 Bac0021131 Klebsiella pneumoniae strain EuSCAPE_PT044 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVP00000000.1 Bac0021132 Klebsiella pneumoniae strain EuSCAPE_PT043 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVR00000000.1 Bac0021133 Klebsiella pneumoniae strain EuSCAPE_PT049 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVV00000000.1 Bac0021134 Klebsiella pneumoniae strain EuSCAPE_PT054 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIVY00000000.1 Bac0021135 Klebsiella pneumoniae strain EuSCAPE_GR101 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIWF00000000.1 Bac0021136 Klebsiella pneumoniae strain EuSCAPE_PT085 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIWY00000000.1 Bac0021137 Klebsiella pneumoniae strain EuSCAPE_PT045 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXD00000000.1 Bac0021138 Klebsiella pneumoniae strain EuSCAPE_PT074 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXE00000000.1 Bac0021139 Klebsiella pneumoniae strain EuSCAPE_PT096 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXG00000000.1 Bac0021140 Klebsiella pneumoniae strain EuSCAPE_PT094 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXH00000000.1 Bac0021141 Klebsiella pneumoniae strain EuSCAPE_PT100 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXL00000000.1 Bac0021142 Klebsiella pneumoniae strain EuSCAPE_GR114 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXM00000000.1 Bac0021143 Klebsiella pneumoniae strain EuSCAPE_GR116 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXO00000000.1 Bac0021144 Klebsiella pneumoniae strain EuSCAPE_GR124 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXR00000000.1 Bac0021145 Klebsiella pneumoniae strain EuSCAPE_GR134 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIXW00000000.1 Bac0021146 Klebsiella pneumoniae strain EuSCAPE_GR139 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIYA00000000.1 Bac0021147 Klebsiella pneumoniae strain EuSCAPE_GR147 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIYC00000000.1 Bac0021148 Klebsiella pneumoniae strain EuSCAPE_GR149 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIYE00000000.1 Bac0021149 Klebsiella pneumoniae strain EuSCAPE_GR162 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIYG00000000.1 Bac0021150 Klebsiella pneumoniae strain EuSCAPE_GR158 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIYH00000000.1 Bac0021151 Klebsiella pneumoniae strain EuSCAPE_GR166 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIYL00000000.1 Bac0021152 Klebsiella pneumoniae strain EuSCAPE_DK013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIYW00000000.1 Bac0021153 Klebsiella pneumoniae strain EuSCAPE_PT002 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIZC00000000.1 Bac0021154 Klebsiella pneumoniae strain EuSCAPE_PT013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIZM00000000.1 Bac0021155 Klebsiella pneumoniae strain EuSCAPE_PT009 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIZP00000000.1 Bac0021156 Klebsiella pneumoniae strain EuSCAPE_PT021 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UIZQ00000000.1 Bac0021157 Klebsiella pneumoniae strain EuSCAPE_SC030 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAI00000000.1 Bac0021158 Klebsiella pneumoniae strain EuSCAPE_SC031 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAJ00000000.1 Bac0021159 Klebsiella pneumoniae strain EuSCAPE_SI004 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAM00000000.1 Bac0021160 Klebsiella pneumoniae strain EuSCAPE_SI014 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAO00000000.1 Bac0021161 Klebsiella pneumoniae strain EuSCAPE_UK070 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAP00000000.1 Bac0021162 Klebsiella pneumoniae strain EuSCAPE_SI022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAV00000000.1 Bac0021163 Klebsiella pneumoniae strain EuSCAPE_UK086 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAW00000000.1 Bac0021164 Klebsiella pneumoniae strain EuSCAPE_UK099 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJAZ00000000.1 Bac0021165 Klebsiella pneumoniae strain EuSCAPE_UK101 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBC00000000.1 Bac0021166 Klebsiella pneumoniae strain EuSCAPE_UK105 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBD00000000.1 Bac0021167 Klebsiella pneumoniae strain EuSCAPE_UK119 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBG00000000.1 Bac0021168 Klebsiella pneumoniae strain EuSCAPE_UK127 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBL00000000.1 Bac0021169 Klebsiella pneumoniae strain EuSCAPE_UK090 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBP00000000.1 Bac0021170 Klebsiella pneumoniae strain EuSCAPE_UK133 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBQ00000000.1 Bac0021171 Klebsiella pneumoniae strain EuSCAPE_HR005 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBT00000000.1 Bac0021172 Klebsiella pneumoniae strain EuSCAPE_RO113 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBV00000000.1 Bac0021173 Klebsiella pneumoniae strain EuSCAPE_SI026 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJBX00000000.1 Bac0021174 Klebsiella pneumoniae strain EuSCAPE_RS033 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJCH00000000.1 Bac0021175 Klebsiella pneumoniae strain EuSCAPE_RS076 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJCQ00000000.1 Bac0021176 Klebsiella pneumoniae strain EuSCAPE_LU004 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJCT00000000.1 Bac0021177 Klebsiella pneumoniae strain EuSCAPE_LU005 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJCV00000000.1 Bac0021178 Klebsiella pneumoniae strain EuSCAPE_RS102 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJCX00000000.1 Bac0021179 Klebsiella pneumoniae strain EuSCAPE_LU008 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDB00000000.1 Bac0021180 Klebsiella pneumoniae strain EuSCAPE_LU014 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDC00000000.1 Bac0021181 Klebsiella pneumoniae strain EuSCAPE_LU015 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDF00000000.1 Bac0021182 Klebsiella pneumoniae strain EuSCAPE_LU018 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDI00000000.1 Bac0021183 Klebsiella pneumoniae strain EuSCAPE_SC001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDL00000000.1 Bac0021184 Klebsiella pneumoniae strain EuSCAPE_SC022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDQ00000000.1 Bac0021185 Klebsiella pneumoniae strain EuSCAPE_UK049 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDS00000000.1 Bac0021186 Klebsiella pneumoniae strain EuSCAPE_UK065 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJDZ00000000.1 Bac0021187 Klebsiella pneumoniae strain EuSCAPE_UK067 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJEB00000000.1 Bac0021188 Klebsiella pneumoniae strain EuSCAPE_RO043 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJEE00000000.1 Bac0021189 Klebsiella pneumoniae strain EuSCAPE_UK081 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJEG00000000.1 Bac0021190 Klebsiella pneumoniae strain EuSCAPE_RO046 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJEH00000000.1 Bac0021191 Klebsiella pneumoniae strain EuSCAPE_RO069 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJEX00000000.1 Bac0021192 Klebsiella pneumoniae strain EuSCAPE_RO067 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJEY00000000.1 Bac0021193 Klebsiella pneumoniae strain EuSCAPE_RO072 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJFA00000000.1 Bac0021194 Klebsiella pneumoniae strain EuSCAPE_RO056 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJFB00000000.1 Bac0021195 Klebsiella pneumoniae strain EuSCAPE_RO076 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJFD00000000.1 Bac0021196 Klebsiella pneumoniae strain EuSCAPE_RO073 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJFH00000000.1 Bac0021197 Klebsiella pneumoniae strain EuSCAPE_RO079 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJFL00000000.1 Bac0021198 Klebsiella pneumoniae strain EuSCAPE_RO084 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJFS00000000.1 Bac0021199 Klebsiella pneumoniae strain EuSCAPE_RO091 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJFW00000000.1 Bac0021200 Klebsiella pneumoniae strain EuSCAPE_RO015 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJGA00000000.1 Bac0021201 Klebsiella pneumoniae strain EuSCAPE_RO021 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJGH00000000.1 Bac0021202 Klebsiella pneumoniae strain EuSCAPE_RO016 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJGI00000000.1 Bac0021203 Klebsiella pneumoniae strain EuSCAPE_RO026 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJGO00000000.1 Bac0021204 Klebsiella pneumoniae strain EuSCAPE_RO039 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJGW00000000.1 Bac0021205 Klebsiella pneumoniae strain EuSCAPE_RO004 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJHG00000000.1 Bac0021206 Klebsiella pneumoniae strain EuSCAPE_UK026 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJHK00000000.1 Bac0021207 Klebsiella pneumoniae strain EuSCAPE_UK029 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJHP00000000.1 Bac0021208 Klebsiella pneumoniae strain EuSCAPE_UK032 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJHQ00000000.1 Bac0021209 Klebsiella pneumoniae strain EuSCAPE_HR089 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJHW00000000.1 Bac0021210 Klebsiella pneumoniae strain EuSCAPE_HR090 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJIG00000000.1 Bac0021211 Klebsiella pneumoniae strain EuSCAPE_RS032 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJIU00000000.1 Bac0021212 Klebsiella pneumoniae strain EuSCAPE_RS040 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJJA00000000.1 Bac0021213 Klebsiella pneumoniae strain EuSCAPE_RS057 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJJJ00000000.1 Bac0021214 Klebsiella pneumoniae strain EuSCAPE_RS056 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJJL00000000.1 Bac0021215 Klebsiella pneumoniae strain EuSCAPE_RS028 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJJN00000000.1 Bac0021216 Klebsiella pneumoniae strain EuSCAPE_RS085 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJJY00000000.1 Bac0021217 Klebsiella pneumoniae strain EuSCAPE_RO122 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJJZ00000000.1 Bac0021218 Klebsiella pneumoniae strain EuSCAPE_RS088 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKE00000000.1 Bac0021219 Klebsiella pneumoniae strain EuSCAPE_RO123 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKF00000000.1 Bac0021220 Klebsiella pneumoniae strain EuSCAPE_RS105 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKK00000000.1 Bac0021221 Klebsiella pneumoniae strain EuSCAPE_RS103 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKL00000000.1 Bac0021222 Klebsiella pneumoniae strain EuSCAPE_RO124 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKN00000000.1 Bac0021223 Klebsiella pneumoniae strain EuSCAPE_HR007 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKT00000000.1 Bac0021224 Klebsiella pneumoniae strain EuSCAPE_HR012 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKW00000000.1 Bac0021225 Klebsiella pneumoniae strain EuSCAPE_HR020 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJKZ00000000.1 Bac0021226 Klebsiella pneumoniae strain EuSCAPE_HR022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJLB00000000.1 Bac0021227 Klebsiella pneumoniae strain EuSCAPE_HR016 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJLC00000000.1 Bac0021228 Klebsiella pneumoniae strain EuSCAPE_HR038 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJLQ00000000.1 Bac0021229 Klebsiella pneumoniae strain EuSCAPE_HR046 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJLW00000000.1 Bac0021230 Klebsiella pneumoniae strain EuSCAPE_HR059 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMB00000000.1 Bac0021231 Klebsiella pneumoniae strain EuSCAPE_HR057 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMC00000000.1 Bac0021232 Klebsiella pneumoniae strain EuSCAPE_HR065 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMG00000000.1 Bac0021233 Klebsiella pneumoniae strain EuSCAPE_HR068 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJML00000000.1 Bac0021234 Klebsiella pneumoniae strain EuSCAPE_HR074 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMP00000000.1 Bac0021235 Klebsiella pneumoniae strain EuSCAPE_RO114 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMQ00000000.1 Bac0021236 Klebsiella pneumoniae strain EuSCAPE_HR081 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMV00000000.1 Bac0021237 Klebsiella pneumoniae strain EuSCAPE_HR084 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMX00000000.1 Bac0021238 Klebsiella pneumoniae strain EuSCAPE_BE022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJMZ00000000.1 Bac0021239 Klebsiella pneumoniae strain EuSCAPE_HR088 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJNA00000000.1 Bac0021240 Klebsiella pneumoniae strain EuSCAPE_IE009 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJNB00000000.1 Bac0021241 Klebsiella pneumoniae strain EuSCAPE_BE003 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJNV00000000.1 Bac0021242 Klebsiella pneumoniae strain EuSCAPE_BE013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJNW00000000.1 Bac0021243 Klebsiella pneumoniae strain EuSCAPE_BE020 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJOH00000000.1 Bac0021244 Klebsiella pneumoniae strain EuSCAPE_BE041 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJON00000000.1 Bac0021245 Klebsiella pneumoniae strain EuSCAPE_BE036 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJOO00000000.1 Bac0021246 Klebsiella pneumoniae strain EuSCAPE_BE049 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJOQ00000000.1 Bac0021247 Klebsiella pneumoniae strain EuSCAPE_BE052 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJOU00000000.1 Bac0021248 Klebsiella pneumoniae strain EuSCAPE_BE059 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJOX00000000.1 Bac0021249 Klebsiella pneumoniae strain EuSCAPE_BE062 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPD00000000.1 Bac0021250 Klebsiella pneumoniae strain EuSCAPE_BE071 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPF00000000.1 Bac0021251 Klebsiella pneumoniae strain EuSCAPE_BE076 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPK00000000.1 Bac0021252 Klebsiella pneumoniae strain EuSCAPE_BE079 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPM00000000.1 Bac0021253 Klebsiella pneumoniae strain EuSCAPE_BE083 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPO00000000.1 Bac0021254 Klebsiella pneumoniae strain EuSCAPE_BE082 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPQ00000000.1 Bac0021255 Klebsiella pneumoniae strain EuSCAPE_BE088 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPU00000000.1 Bac0021256 Klebsiella pneumoniae strain EuSCAPE_BE091 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPV00000000.1 Bac0021257 Klebsiella pneumoniae strain EuSCAPE_BE085 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJPW00000000.1 Bac0021258 Klebsiella pneumoniae strain EuSCAPE_BE098 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJQD00000000.1 Bac0021259 Klebsiella pneumoniae strain EuSCAPE_RS109 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJQK00000000.1 Bac0021260 Klebsiella pneumoniae strain EuSCAPE_RS115 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJQL00000000.1 Bac0021261 Klebsiella pneumoniae strain EuSCAPE_RS118 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJQN00000000.1 Bac0021262 Klebsiella pneumoniae strain EuSCAPE_TR100 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJQV00000000.1 Bac0021263 Klebsiella pneumoniae strain EuSCAPE_TR106 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJQX00000000.1 Bac0021264 Klebsiella pneumoniae strain EuSCAPE_TR112 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRC00000000.1 Bac0021265 Klebsiella pneumoniae strain EuSCAPE_TR125 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRG00000000.1 Bac0021266 Klebsiella pneumoniae strain EuSCAPE_TR126 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRI00000000.1 Bac0021267 Klebsiella pneumoniae strain EuSCAPE_TR130 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRJ00000000.1 Bac0021268 Klebsiella pneumoniae strain EuSCAPE_TR156 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRT00000000.1 Bac0021269 Klebsiella pneumoniae strain EuSCAPE_TR158 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRV00000000.1 Bac0021270 Klebsiella pneumoniae strain EuSCAPE_BE122 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRW00000000.1 Bac0021271 Klebsiella pneumoniae strain EuSCAPE_TR161 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRX00000000.1 Bac0021272 Klebsiella pneumoniae strain EuSCAPE_TR001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJRZ00000000.1 Bac0021273 Klebsiella pneumoniae strain EuSCAPE_TR159 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJSA00000000.1 Bac0021274 Klebsiella pneumoniae strain EuSCAPE_TR015 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJSM00000000.1 Bac0021275 Klebsiella pneumoniae strain EuSCAPE_TR025 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJSP00000000.1 Bac0021276 Klebsiella pneumoniae strain EuSCAPE_BE108 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJST00000000.1 Bac0021277 Klebsiella pneumoniae strain EuSCAPE_TR026 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJSU00000000.1 Bac0021278 Klebsiella pneumoniae strain EuSCAPE_BE109 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJTA00000000.1 Bac0021279 Klebsiella pneumoniae strain EuSCAPE_TR052 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJTH00000000.1 Bac0021280 Klebsiella pneumoniae strain EuSCAPE_TR056 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJTI00000000.1 Bac0021281 Klebsiella pneumoniae strain EuSCAPE_TR058 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJTK00000000.1 Bac0021282 Klebsiella pneumoniae strain EuSCAPE_TR062 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJTO00000000.1 Bac0021283 Klebsiella pneumoniae strain EuSCAPE_TR054 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJTW00000000.1 Bac0021284 Klebsiella pneumoniae strain EuSCAPE_TR088 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJTZ00000000.1 Bac0021285 Klebsiella pneumoniae strain EuSCAPE_TR280 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJUG00000000.1 Bac0021286 Klebsiella pneumoniae strain EuSCAPE_TR290 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJUJ00000000.1 Bac0021287 Klebsiella pneumoniae strain EuSCAPE_TR178 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJUK00000000.1 Bac0021288 Klebsiella pneumoniae strain EuSCAPE_TR286 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJUO00000000.1 Bac0021289 Klebsiella pneumoniae strain EuSCAPE_TR302 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJUP00000000.1 Bac0021290 Klebsiella pneumoniae strain EuSCAPE_PL047 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJVC00000000.1 Bac0021291 Klebsiella pneumoniae strain EuSCAPE_CZ016 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJVJ00000000.1 Bac0021292 Klebsiella pneumoniae strain EuSCAPE_IT031 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJVO00000000.1 Bac0021293 Klebsiella pneumoniae strain EuSCAPE_IT095 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJVT00000000.1 Bac0021294 Klebsiella pneumoniae strain EuSCAPE_TR184 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJVZ00000000.1 Bac0021295 Klebsiella pneumoniae strain EuSCAPE_TR189 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJWC00000000.1 Bac0021296 Klebsiella pneumoniae strain EuSCAPE_TR197 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJWF00000000.1 Bac0021297 Klebsiella pneumoniae strain EuSCAPE_TR202 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJWL00000000.1 Bac0021298 Klebsiella pneumoniae strain EuSCAPE_TR208 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJWP00000000.1 Bac0021299 Klebsiella pneumoniae strain EuSCAPE_TR211 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJWR00000000.1 Bac0021300 Klebsiella pneumoniae strain EuSCAPE_TR231 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJXE00000000.1 Bac0021301 Klebsiella pneumoniae strain EuSCAPE_TR237 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJXH00000000.1 Bac0021302 Klebsiella pneumoniae strain EuSCAPE_TR239 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJXJ00000000.1 Bac0021303 Klebsiella pneumoniae strain EuSCAPE_TR240 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJXK00000000.1 Bac0021304 Klebsiella pneumoniae strain EuSCAPE_TR253 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJXN00000000.1 Bac0021305 Klebsiella pneumoniae strain EuSCAPE_TR270 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJXY00000000.1 Bac0021306 Klebsiella pneumoniae strain EuSCAPE_TR274 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UJYD00000000.1 Bac0021307 Klebsiella pneumoniae strain EuSCAPE_AT023 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKBB00000000.1 Bac0021308 Klebsiella pneumoniae strain EuSCAPE_AT024 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKBC00000000.1 Bac0021309 Klebsiella pneumoniae strain EuSCAPE_EE012 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKBI00000000.1 Bac0021310 Klebsiella pneumoniae strain EuSCAPE_EE015 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKBK00000000.1 Bac0021311 Klebsiella pneumoniae strain EuSCAPE_EE013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKBL00000000.1 Bac0021312 Klebsiella pneumoniae strain EuSCAPE_PL007 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKBO00000000.1 Bac0021313 Klebsiella pneumoniae strain EuSCAPE_PL005 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKBR00000000.1 Bac0021314 Klebsiella pneumoniae strain EuSCAPE_AT006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCB00000000.1 Bac0021315 Klebsiella pneumoniae strain EuSCAPE_PL025 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCE00000000.1 Bac0021316 Klebsiella pneumoniae strain EuSCAPE_PL034 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCH00000000.1 Bac0021317 Klebsiella pneumoniae strain EuSCAPE_PL019 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCI00000000.1 Bac0021318 Klebsiella pneumoniae strain EuSCAPE_PL045 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCK00000000.1 Bac0021319 Klebsiella pneumoniae strain EuSCAPE_PL037 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCN00000000.1 Bac0021320 Klebsiella pneumoniae strain EuSCAPE_PL052 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCP00000000.1 Bac0021321 Klebsiella pneumoniae strain EuSCAPE_PL054 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCY00000000.1 Bac0021322 Klebsiella pneumoniae strain EuSCAPE_FR016 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKCZ00000000.1 Bac0021323 Klebsiella pneumoniae strain EuSCAPE_FR020 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDD00000000.1 Bac0021324 Klebsiella pneumoniae strain EuSCAPE_FR052 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDM00000000.1 Bac0021325 Klebsiella pneumoniae strain EuSCAPE_FR051 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDN00000000.1 Bac0021326 Klebsiella pneumoniae strain EuSCAPE_SK001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDO00000000.1 Bac0021327 Klebsiella pneumoniae strain EuSCAPE_SK003 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDQ00000000.1 Bac0021328 Klebsiella pneumoniae strain EuSCAPE_SK004 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDT00000000.1 Bac0021329 Klebsiella pneumoniae strain EuSCAPE_SK015 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDX00000000.1 Bac0021330 Klebsiella pneumoniae strain EuSCAPE_SK011 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKDY00000000.1 Bac0021331 Klebsiella pneumoniae strain EuSCAPE_SK006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKED00000000.1 Bac0021332 Klebsiella pneumoniae strain EuSCAPE_SK029 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKEE00000000.1 Bac0021333 Klebsiella pneumoniae strain EuSCAPE_SK022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKEF00000000.1 Bac0021334 Klebsiella pneumoniae strain EuSCAPE_SK033 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKEL00000000.1 Bac0021335 Klebsiella pneumoniae strain EuSCAPE_SK030 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKEM00000000.1 Bac0021336 Klebsiella pneumoniae strain EuSCAPE_CZ004 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKEY00000000.1 Bac0021337 Klebsiella pneumoniae strain EuSCAPE_CZ012 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKFB00000000.1 Bac0021338 Klebsiella pneumoniae strain EuSCAPE_SK046 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKFC00000000.1 Bac0021339 Klebsiella pneumoniae strain EuSCAPE_CZ015 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKFE00000000.1 Bac0021340 Klebsiella pneumoniae strain EuSCAPE_CZ013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKFF00000000.1 Bac0021341 Klebsiella pneumoniae strain EuSCAPE_CZ031 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKFN00000000.1 Bac0021342 Klebsiella pneumoniae strain EuSCAPE_AT011 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKFT00000000.1 Bac0021343 Klebsiella pneumoniae strain EuSCAPE_CZ025 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKFV00000000.1 Bac0021344 Klebsiella pneumoniae strain EuSCAPE_AT001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKGC00000000.1 Bac0021345 Klebsiella pneumoniae strain EuSCAPE_SK031 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKGG00000000.1 Bac0021346 Klebsiella pneumoniae strain EuSCAPE_PL006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKGP00000000.1 Bac0021347 Klebsiella pneumoniae strain EuSCAPE_PL012 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKGQ00000000.1 Bac0021348 Klebsiella pneumoniae strain EuSCAPE_PL020 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKGT00000000.1 Bac0021349 Klebsiella pneumoniae strain EuSCAPE_PL018 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKGX00000000.1 Bac0021350 Klebsiella pneumoniae strain EuSCAPE_FR006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHO00000000.1 Bac0021351 Klebsiella pneumoniae strain EuSCAPE_FR007 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHP00000000.1 Bac0021352 Klebsiella pneumoniae strain EuSCAPE_FR022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHQ00000000.1 Bac0021353 Klebsiella pneumoniae strain EuSCAPE_EE004 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHR00000000.1 Bac0021354 Klebsiella pneumoniae strain EuSCAPE_FR028 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHS00000000.1 Bac0021355 Klebsiella pneumoniae strain EuSCAPE_FR047 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHU00000000.1 Bac0021356 Klebsiella pneumoniae strain EuSCAPE_FR030 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHV00000000.1 Bac0021357 Klebsiella pneumoniae strain EuSCAPE_FR045 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKHW00000000.1 Bac0021358 Klebsiella pneumoniae strain EuSCAPE_EE006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKIA00000000.1 Bac0021359 Klebsiella pneumoniae strain EuSCAPE_FR070 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKIC00000000.1 Bac0021360 Klebsiella pneumoniae strain EuSCAPE_FR078 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKII00000000.1 Bac0021361 Klebsiella pneumoniae strain EuSCAPE_EE009 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKIQ00000000.1 Bac0021362 Klebsiella pneumoniae strain EuSCAPE_DE013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKIS00000000.1 Bac0021363 Klebsiella pneumoniae strain EuSCAPE_MT013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKIZ00000000.1 Bac0021364 Klebsiella pneumoniae strain EuSCAPE_LT004 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKJE00000000.2 Bac0021365 Klebsiella pneumoniae strain EuSCAPE_LT007 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKJI00000000.2 Bac0021366 Klebsiella pneumoniae strain EuSCAPE_IL001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKJN00000000.2 Bac0021367 Klebsiella pneumoniae strain EuSCAPE_IL009 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKJO00000000.2 Bac0021368 Klebsiella pneumoniae strain EuSCAPE_IL006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKJR00000000.2 Bac0021369 Klebsiella pneumoniae strain EuSCAPE_IL012 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKJS00000000.1 Bac0021370 Klebsiella pneumoniae strain EuSCAPE_DE017 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKJY00000000.1 Bac0021371 Klebsiella pneumoniae strain EuSCAPE_IL017 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKKG00000000.2 Bac0021372 Klebsiella pneumoniae strain 3754STDY6170042 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKKH00000000.2 Bac0021373 Klebsiella pneumoniae strain EuSCAPE_DE027 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKKQ00000000.1 Bac0021374 Klebsiella pneumoniae strain EuSCAPE_DE039 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKKU00000000.1 Bac0021375 Klebsiella pneumoniae strain EuSCAPE_DE005 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKKV00000000.1 Bac0021376 Klebsiella pneumoniae strain EuSCAPE_DE041 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKKY00000000.1 Bac0021377 Klebsiella pneumoniae strain EuSCAPE_DE067 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLH00000000.1 Bac0021378 Klebsiella pneumoniae strain EuSCAPE_DE035 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLI00000000.1 Bac0021379 Klebsiella pneumoniae strain EuSCAPE_DE075 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLM00000000.1 Bac0021380 Klebsiella pneumoniae strain EuSCAPE_DE076 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLO00000000.1 Bac0021381 Klebsiella pneumoniae strain EuSCAPE_DE080 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLT00000000.1 Bac0021382 Klebsiella pneumoniae strain EuSCAPE_DE009 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLU00000000.1 Bac0021383 Klebsiella pneumoniae strain EuSCAPE_DE082 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLV00000000.2 Bac0021384 Klebsiella pneumoniae strain EuSCAPE_DE086 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLW00000000.2 Bac0021385 Klebsiella pneumoniae strain EuSCAPE_DE088 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKLX00000000.2 Bac0021386 Klebsiella pneumoniae strain EuSCAPE_DE091 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKMA00000000.2 Bac0021387 Klebsiella pneumoniae strain EuSCAPE_IL034 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKME00000000.1 Bac0021388 Klebsiella pneumoniae strain EuSCAPE_IT024 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKMG00000000.1 Bac0021389 Klebsiella pneumoniae strain EuSCAPE_IT021 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKMH00000000.1 Bac0021390 Klebsiella pneumoniae strain EuSCAPE_IT025 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKMI00000000.1 Bac0021391 Klebsiella pneumoniae strain EuSCAPE_IT032 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKMR00000000.1 Bac0021392 Klebsiella pneumoniae strain EuSCAPE_IT039 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKMV00000000.1 Bac0021393 Klebsiella pneumoniae strain EuSCAPE_IT042 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKMX00000000.1 Bac0021394 Klebsiella pneumoniae strain EuSCAPE_IT047 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKND00000000.1 Bac0021395 Klebsiella pneumoniae strain EuSCAPE_IT049 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKNE00000000.1 Bac0021396 Klebsiella pneumoniae strain EuSCAPE_IT051 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKNH00000000.1 Bac0021397 Klebsiella pneumoniae strain EuSCAPE_IT050 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKNI00000000.1 Bac0021398 Klebsiella pneumoniae strain EuSCAPE_IT059 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKNP00000000.1 Bac0021399 Klebsiella pneumoniae strain EuSCAPE_IT070 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKNX00000000.1 Bac0021400 Klebsiella pneumoniae strain EuSCAPE_IT072 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKOB00000000.1 Bac0021401 Klebsiella pneumoniae strain EuSCAPE_IL025 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKOM00000000.1 Bac0021402 Klebsiella pneumoniae strain EuSCAPE_IL044 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKOO00000000.1 Bac0021403 Klebsiella pneumoniae strain EuSCAPE_IT088 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKOP00000000.1 Bac0021404 Klebsiella pneumoniae strain EuSCAPE_IL045 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKOR00000000.1 Bac0021405 Klebsiella pneumoniae strain EuSCAPE_IL063 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKPG00000000.1 Bac0021406 Klebsiella pneumoniae strain EuSCAPE_IL068 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKPN00000000.1 Bac0021407 Klebsiella pneumoniae strain EuSCAPE_IL028 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKPP00000000.1 Bac0021408 Klebsiella pneumoniae strain EuSCAPE_IL079 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKPS00000000.1 Bac0021409 Klebsiella pneumoniae strain EuSCAPE_IL080 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKPV00000000.1 Bac0021410 Klebsiella pneumoniae strain EuSCAPE_IL029 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKPZ00000000.1 Bac0021411 Klebsiella pneumoniae strain EuSCAPE_IL084 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQA00000000.1 Bac0021412 Klebsiella pneumoniae strain EuSCAPE_ME005 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQD00000000.1 Bac0021413 Klebsiella pneumoniae strain EuSCAPE_ME001 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQE00000000.1 Bac0021414 Klebsiella pneumoniae strain EuSCAPE_ME008 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQF00000000.1 Bac0021415 Klebsiella pneumoniae strain EuSCAPE_IL076 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQK00000000.1 Bac0021416 Klebsiella pneumoniae strain EuSCAPE_ME011 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQL00000000.1 Bac0021417 Klebsiella pneumoniae strain EuSCAPE_ME014 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQN00000000.1 Bac0021418 Klebsiella pneumoniae strain EuSCAPE_ME015 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQO00000000.1 Bac0021419 Klebsiella pneumoniae strain EuSCAPE_IL033 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKQY00000000.1 Bac0021420 Klebsiella pneumoniae strain EuSCAPE_IT013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKRF00000000.1 Bac0021421 Klebsiella pneumoniae strain EuSCAPE_IT017 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKRG00000000.1 Bac0021422 Klebsiella pneumoniae strain EuSCAPE_IT199 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKRU00000000.1 Bac0021423 Klebsiella pneumoniae strain EuSCAPE_IT206 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKRZ00000000.1 Bac0021424 Klebsiella pneumoniae strain EuSCAPE_IT214 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSE00000000.1 Bac0021425 Klebsiella pneumoniae strain EuSCAPE_IT103 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSG00000000.1 Bac0021426 Klebsiella pneumoniae strain EuSCAPE_IT221 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSI00000000.1 Bac0021427 Klebsiella pneumoniae strain EuSCAPE_IT226 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSM00000000.1 Bac0021428 Klebsiella pneumoniae strain EuSCAPE_IT233 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSR00000000.1 Bac0021429 Klebsiella pneumoniae strain EuSCAPE_IT234 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSU00000000.1 Bac0021430 Klebsiella pneumoniae strain EuSCAPE_IT237 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSW00000000.1 Bac0021431 Klebsiella pneumoniae strain EuSCAPE_IT242 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKSX00000000.1 Bac0021432 Klebsiella pneumoniae strain EuSCAPE_IT249 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTD00000000.1 Bac0021433 Klebsiella pneumoniae strain EuSCAPE_IT248 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTE00000000.1 Bac0021434 Klebsiella pneumoniae strain EuSCAPE_IT247 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTG00000000.1 Bac0021435 Klebsiella pneumoniae strain EuSCAPE_IT256 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTJ00000000.1 Bac0021436 Klebsiella pneumoniae strain EuSCAPE_IT246 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTK00000000.1 Bac0021437 Klebsiella pneumoniae strain EuSCAPE_IT223 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTL00000000.1 Bac0021438 Klebsiella pneumoniae strain EuSCAPE_IT250 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTM00000000.1 Bac0021439 Klebsiella pneumoniae strain EuSCAPE_IT258 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTO00000000.1 Bac0021440 Klebsiella pneumoniae strain EuSCAPE_IT112 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTV00000000.1 Bac0021441 Klebsiella pneumoniae strain EuSCAPE_IT117 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKTY00000000.1 Bac0021442 Klebsiella pneumoniae strain EuSCAPE_IT127 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKUC00000000.1 Bac0021443 Klebsiella pneumoniae strain EuSCAPE_IT130 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKUD00000000.1 Bac0021444 Klebsiella pneumoniae strain EuSCAPE_IT136 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKUM00000000.1 Bac0021445 Klebsiella pneumoniae strain EuSCAPE_IT138 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKUV00000000.1 Bac0021446 Klebsiella pneumoniae strain EuSCAPE_IT145 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVA00000000.1 Bac0021447 Klebsiella pneumoniae strain EuSCAPE_IT149 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVB00000000.1 Bac0021448 Klebsiella pneumoniae strain EuSCAPE_IT151 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVE00000000.1 Bac0021449 Klebsiella pneumoniae strain EuSCAPE_IT161 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVH00000000.1 Bac0021450 Klebsiella pneumoniae strain EuSCAPE_IT165 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVJ00000000.1 Bac0021451 Klebsiella pneumoniae strain EuSCAPE_IT163 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVL00000000.1 Bac0021452 Klebsiella pneumoniae strain EuSCAPE_IT166 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVM00000000.1 Bac0021453 Klebsiella pneumoniae strain EuSCAPE_IT172 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVQ00000000.1 Bac0021454 Klebsiella pneumoniae strain EuSCAPE_IT177 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVS00000000.1 Bac0021455 Klebsiella pneumoniae strain EuSCAPE_IT180 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVV00000000.1 Bac0021456 Klebsiella pneumoniae strain EuSCAPE_IT185 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKVX00000000.1 Bac0021457 Klebsiella pneumoniae strain EuSCAPE_IT370 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKWD00000000.1 Bac0021458 Klebsiella pneumoniae strain EuSCAPE_IT375 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKWJ00000000.1 Bac0021459 Klebsiella pneumoniae strain EuSCAPE_IT399 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKWZ00000000.1 Bac0021460 Klebsiella pneumoniae strain EuSCAPE_IT396 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKXA00000000.1 Bac0021461 Klebsiella pneumoniae strain EuSCAPE_IT290 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKXO00000000.1 Bac0021462 Klebsiella pneumoniae strain EuSCAPE_IT300 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKXS00000000.1 Bac0021463 Klebsiella pneumoniae strain EuSCAPE_IT313 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKXT00000000.1 Bac0021464 Klebsiella pneumoniae strain EuSCAPE_IT264 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKXX00000000.1 Bac0021465 Klebsiella pneumoniae strain EuSCAPE_IT322 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKXY00000000.1 Bac0021466 Klebsiella pneumoniae strain EuSCAPE_IT330 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKYH00000000.1 Bac0021467 Klebsiella pneumoniae strain EuSCAPE_IT337 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKYL00000000.1 Bac0021468 Klebsiella pneumoniae strain EuSCAPE_IT333 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKYQ00000000.1 Bac0021469 Klebsiella pneumoniae strain EuSCAPE_IT365 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKZG00000000.1 Bac0021470 Klebsiella pneumoniae strain EuSCAPE_ES050 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKZL00000000.1 Bac0021471 Klebsiella pneumoniae strain EuSCAPE_ES052 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKZR00000000.1 Bac0021472 Klebsiella pneumoniae strain EuSCAPE_ES063 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKZW00000000.1 Bac0021473 Klebsiella pneumoniae strain EuSCAPE_HU006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 UKZY00000000.1 Bac0021474 Klebsiella pneumoniae strain EuSCAPE_ES083 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULAN00000000.1 Bac0021475 Klebsiella pneumoniae strain EuSCAPE_ES081 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULAT00000000.1 Bac0021476 Klebsiella pneumoniae strain EuSCAPE_ES105 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULBA00000000.1 Bac0021477 Klebsiella pneumoniae strain EuSCAPE_HU012 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULBD00000000.1 Bac0021478 Klebsiella pneumoniae strain EuSCAPE_HU013 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULBI00000000.1 Bac0021479 Klebsiella pneumoniae strain EuSCAPE_BU021 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULBS00000000.1 Bac0021480 Klebsiella pneumoniae strain EuSCAPE_HU027 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULBT00000000.1 Bac0021481 Klebsiella pneumoniae strain EuSCAPE_HU031 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULBX00000000.1 Bac0021482 Klebsiella pneumoniae strain EuSCAPE_HU022 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCA00000000.1 Bac0021483 Klebsiella pneumoniae strain EuSCAPE_HU036 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCC00000000.1 Bac0021484 Klebsiella pneumoniae strain EuSCAPE_HU050 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCD00000000.1 Bac0021485 Klebsiella pneumoniae strain EuSCAPE_HU049 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCF00000000.1 Bac0021486 Klebsiella pneumoniae strain EuSCAPE_HU047 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCI00000000.1 Bac0021487 Klebsiella pneumoniae strain EuSCAPE_HU053 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCM00000000.1 Bac0021488 Klebsiella pneumoniae strain EuSCAPE_BU024 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCN00000000.1 Bac0021489 Klebsiella pneumoniae strain EuSCAPE_HU065 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCR00000000.1 Bac0021490 Klebsiella pneumoniae strain EuSCAPE_ES205 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULCZ00000000.1 Bac0021491 Klebsiella pneumoniae strain EuSCAPE_ES215 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDH00000000.1 Bac0021492 Klebsiella pneumoniae strain EuSCAPE_ES218 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDK00000000.1 Bac0021493 Klebsiella pneumoniae strain EuSCAPE_ES220 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDM00000000.1 Bac0021494 Klebsiella pneumoniae strain EuSCAPE_ES214 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDN00000000.1 Bac0021495 Klebsiella pneumoniae strain EuSCAPE_ES228 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDR00000000.1 Bac0021496 Klebsiella pneumoniae strain EuSCAPE_ES229 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDS00000000.1 Bac0021497 Klebsiella pneumoniae strain EuSCAPE_ES273 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDT00000000.1 Bac0021498 Klebsiella pneumoniae strain EuSCAPE_ES232 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULDU00000000.1 Bac0021499 Klebsiella pneumoniae strain EuSCAPE_ES243 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEB00000000.1 Bac0021500 Klebsiella pneumoniae strain EuSCAPE_ES241 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEC00000000.1 Bac0021501 Klebsiella pneumoniae strain EuSCAPE_ES248 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEF00000000.1 Bac0021502 Klebsiella pneumoniae strain EuSCAPE_ES252 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEJ00000000.1 Bac0021503 Klebsiella pneumoniae strain EuSCAPE_ES250 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEK00000000.1 Bac0021504 Klebsiella pneumoniae strain EuSCAPE_ES253 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEL00000000.1 Bac0021505 Klebsiella pneumoniae strain EuSCAPE_ES277 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULET00000000.1 Bac0021506 Klebsiella pneumoniae strain EuSCAPE_ES283 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEV00000000.1 Bac0021507 Klebsiella pneumoniae strain EuSCAPE_ES262 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULEW00000000.1 Bac0021508 Klebsiella pneumoniae strain EuSCAPE_ES263 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULFH00000000.1 Bac0021509 Klebsiella pneumoniae strain EuSCAPE_LU003 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULFK00000000.1 Bac0021510 Klebsiella pneumoniae strain EuSCAPE_MK006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULFM00000000.1 Bac0021511 Klebsiella pneumoniae strain EuSCAPE_HR108 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULFN00000000.1 Bac0021512 Klebsiella pneumoniae strain EuSCAPE_GR006 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 ULFO00000000.1 Bac0021513 Oenococcus oeni strain CRBO_1395 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Oenococcus Oenococcus oeni Positive Cocci No 1 1 Facultative anaerobe 17 Mesophilic Multiple Free living Nonsporulating 1247 ULFV00000000.1 Bac0021514 Xanthomonas arboricola pv. juglandis strain CPBF 426 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas arboricola 195709 UNRM00000000.1 Bac0021515 Trichococcus sp. ART1 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Trichococcus Trichococcus shcherbakoviae 2094020 UNRR00000000.1 Bac0021516 Burkholderia pseudomallei strain A-095-05-2-04 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia pseudomallei Negative Rod Yes 1 2 Aerobe Mesophilic Terrestrial Free living 28450 UVEN00000000.1 Bac0021517 Bacillus safensis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus safensis assembly site of the Phoenix spacecraft 561879 UWJF00000000.1 Bac0021518 Rhodoplanes piscinae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Rhodoplanes Rhodoplanes serenus rod facultative aerobe/anaerobe 29 mesophilic 200615 UWOC00000000.1 Bac0021519 Rhodobacteraceae bacterium THAF1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodobacteraceae bacterium THAF1 2483814 UXAS00000000.1 Bac0021520 Pseudarthrobacter sp. T11b Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter ulcerisalmonis 2483813 UXAU00000000.1 Bac0021521 Filibacter sp. TB-66 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Filibacter Filibacter tadaridae 2483811 UXAV00000000.1 Bac0021522 Lysinibacillus sphaericus strain NCTC11025 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Lysinibacillus Lysinibacillus sphaericus Positive Rod Yes 1 1 Aerobe Mesophilic Specialized Free living Sporulating 1421 UYIR00000000.1 Bac0021523 Shigella dysenteriae strain NCTC11868 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella dysenteriae Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 622 UYIT00000000.1 Bac0021524 Helicobacter pametensis strain NCTC12888 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pametensis microaerophile 95149 UYIU00000000.1 Bac0021525 Bergeyella zoohelcum strain NCTC12929 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Bergeyella Bergeyella zoohelcum 1015 UYIV00000000.1 Bac0021526 Algoriella xinjiangensis strain NCTC13469 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Algoriella Algoriella xinjiangensis 684065 UYIY00000000.1 Bac0021527 Oenococcus sp. WK4 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Oenococcus Oenococcus sicerae 2203724 UYPS00000000.1 Bac0021528 Mycoplasma caviae strain NCTC10126 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis caviae 55603 UZVY00000000.1 Bac0021529 Paracoccus sp. M1-83 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus haematequi 2491866 UZWE00000000.1 Bac0021530 Salmonella enterica subsp. enterica serovar Dublin strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 98360 VACG00000000.1 Bac0021531 Acinetobacter baumannii strain Aci00835 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAFQ00000000.1 Bac0021532 Acinetobacter baumannii strain Aci00840 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAFU00000000.1 Bac0021533 Acinetobacter baumannii strain Aci00844 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAFW00000000.1 Bac0021534 Acinetobacter baumannii strain Aci00847 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAFX00000000.1 Bac0021535 Acinetobacter baumannii strain Aci00848 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAFY00000000.1 Bac0021536 Acinetobacter baumannii strain Aci00850 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGA00000000.1 Bac0021537 Acinetobacter baumannii strain Aci00852 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGB00000000.1 Bac0021538 Acinetobacter baumannii strain Aci00853 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGC00000000.1 Bac0021539 Acinetobacter baumannii strain Aci00857 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGD00000000.1 Bac0021540 Acinetobacter baumannii strain Aci00860 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGF00000000.1 Bac0021541 Acinetobacter baumannii strain Aci00862 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGG00000000.1 Bac0021542 Acinetobacter baumannii strain Aci00866 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGJ00000000.1 Bac0021543 Acinetobacter baumannii strain Aci00869 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGL00000000.1 Bac0021544 Acinetobacter baumannii strain Aci00854 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGM00000000.1 Bac0021545 Acinetobacter baumannii strain Aci00871 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGN00000000.1 Bac0021546 Acinetobacter baumannii strain Aci00838 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGQ00000000.1 Bac0021547 Acinetobacter baumannii strain Aci00842 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGT00000000.1 Bac0021548 Acinetobacter baumannii strain Aci00851 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGV00000000.1 Bac0021549 Acinetobacter baumannii strain Aci00861 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGY00000000.1 Bac0021550 Acinetobacter baumannii strain Aci00864 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAGZ00000000.1 Bac0021551 Acinetobacter baumannii strain Aci00870 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAHB00000000.1 Bac0021552 Neisseria gonorrhoeae strain LRRBGS_0756 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 VAHK00000000.1 Bac0021553 Neisseria gonorrhoeae strain LRRBGS_0757 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria gonorrhoeae Negative Cocci No 1 2 Aerobe 35 Mesophilic HostAssociated Free living Singles - Pairs 485 VAHL00000000.1 Bac0021554 Pseudarthrobacter sp. NamE5 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter sp. NamE5 2576839 VAHO00000000.1 Bac0021555 Salmonella enterica strain H6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAJQ00000000.1 Bac0021556 Salmonella enterica strain H5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAJR00000000.1 Bac0021557 Salmonella enterica strain H43 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAJV00000000.1 Bac0021558 Salmonella enterica strain H42 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAJW00000000.1 Bac0021559 Salmonella enterica strain H41 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAJX00000000.1 Bac0021560 Salmonella enterica strain H3 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAJZ00000000.1 Bac0021561 Salmonella enterica strain H36 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAKB00000000.1 Bac0021562 Salmonella enterica strain H31 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAKG00000000.1 Bac0021563 Salmonella enterica strain H26 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAKM00000000.1 Bac0021564 Salmonella enterica strain H25 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAKN00000000.1 Bac0021565 Salmonella enterica strain H23 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAKP00000000.1 Bac0021566 Salmonella enterica strain H19 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAKU00000000.1 Bac0021567 Salmonella enterica strain H15 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VAKY00000000.1 Bac0021568 Salmonella enterica strain H12 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VALB00000000.1 Bac0021569 Salmonella enterica strain H11 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VALC00000000.1 Bac0021570 Salmonella enterica strain H10 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VALD00000000.1 Bac0021571 Clostridioides difficile strain WCH065050 115 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Clostridioides Clostridioides difficile Positive Rod Yes 1 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Human 1496 VALF00000000.1 Bac0021572 Staphylococcus aureus strain 0537-0302-2015 367 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VALH00000000.1 Bac0021573 Acinetobacter baumannii strain Ab27 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VALR00000000.1 Bac0021574 Acinetobacter baumannii strain Ab28 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VALS00000000.1 Bac0021575 Acinetobacter baumannii strain Ab30 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VALT00000000.1 Bac0021576 Acinetobacter baumannii strain Ab35 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VALW00000000.1 Bac0021577 Acinetobacter baumannii strain Ab36 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VALX00000000.1 Bac0021578 Acinetobacter baumannii strain Ab38 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VALZ00000000.1 Bac0021579 Acinetobacter baumannii strain Ab41 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMB00000000.1 Bac0021580 Acinetobacter baumannii strain Ab45 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMC00000000.1 Bac0021581 Acinetobacter baumannii strain Ab49 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMD00000000.1 Bac0021582 Acinetobacter baumannii strain Ab189 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMF00000000.1 Bac0021583 Acinetobacter baumannii strain Ab190 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMG00000000.1 Bac0021584 Acinetobacter baumannii strain Ab191 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMH00000000.1 Bac0021585 Acinetobacter baumannii strain Ab3 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMK00000000.1 Bac0021586 Acinetobacter baumannii strain Ab5 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMM00000000.1 Bac0021587 Acinetobacter baumannii strain Ab9 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMO00000000.1 Bac0021588 Acinetobacter baumannii strain Ab12 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMQ00000000.1 Bac0021589 Acinetobacter baumannii strain Ab13 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMR00000000.1 Bac0021590 Acinetobacter baumannii strain Ab14 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMS00000000.1 Bac0021591 Acinetobacter baumannii strain Ab20 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMW00000000.1 Bac0021592 Acinetobacter baumannii strain Ab21 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMX00000000.1 Bac0021593 Acinetobacter baumannii strain Ab22 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAMY00000000.1 Bac0021594 Acinetobacter baumannii strain M8 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VANC00000000.1 Bac0021595 Photobacterium damselae subsp. damselae strain 144bp-OG3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium damselae 85581 VAND00000000.1 Bac0021596 Staphylococcus epidermidis strain 181231 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic HostAssociated Free living Clusters - Singles 1282 VANN00000000.1 Bac0021597 Microbispora fusca strain NEAU-HEGS1-5 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Microbispora Microbispora triticiradicis 2200763 VANP00000000.1 Bac0021598 Polaribacter aestuariivivens strain DBTF-3 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter aestuariivivens 2304626 VANR00000000.1 Bac0021599 Arcobacter arenosus strain CAU 1517 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter arenosus 2576037 VANU00000000.1 Bac0021600 Acinetobacter baumannii strain Ab96 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VANX00000000.1 Bac0021601 Acinetobacter baumannii strain Ab89 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAOA00000000.1 Bac0021602 Acinetobacter baumannii strain Ab75 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAOH00000000.1 Bac0021603 Acinetobacter baumannii strain Ab70 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAOI00000000.1 Bac0021604 Acinetobacter baumannii strain Ab64 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAOM00000000.1 Bac0021605 Helicobacter pylori strain N6 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 VAPN00000000.1 Bac0021606 Helicobacter pylori strain N6_del_htrA Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Negative Spirilla No 1 2 Microaerophilic 37 Mesophilic HostAssociated Free living Singles Human 210 VAPO00000000.2 Bac0021607 Acinetobacter baumannii strain AB143 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAPZ00000000.1 Bac0021608 Acinetobacter baumannii strain AB139 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQB00000000.1 Bac0021609 Acinetobacter baumannii strain AB135 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQD00000000.1 Bac0021610 Acinetobacter baumannii strain AB133 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQE00000000.1 Bac0021611 Acinetobacter baumannii strain AB127 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQF00000000.1 Bac0021612 Acinetobacter baumannii strain AB123 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQG00000000.1 Bac0021613 Acinetobacter baumannii strain AB119 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQI00000000.1 Bac0021614 Acinetobacter baumannii strain AB111 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQN00000000.1 Bac0021615 Acinetobacter baumannii strain AB182 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQR00000000.1 Bac0021616 Acinetobacter baumannii strain AB178 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQU00000000.1 Bac0021617 Acinetobacter baumannii strain AB176 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQV00000000.1 Bac0021618 Acinetobacter baumannii strain AB174 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VAQX00000000.1 Bac0021619 Acinetobacter baumannii strain AB165 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VARE00000000.1 Bac0021620 Acinetobacter baumannii strain AB160 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VARF00000000.1 Bac0021621 Acinetobacter baumannii strain AB150 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VARH00000000.1 Bac0021622 Acinetobacter baumannii strain AB149 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VARI00000000.1 Bac0021623 Acinetobacter baumannii strain AB188 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VARK00000000.1 Bac0021624 Acinetobacter baumannii strain AB187 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VARL00000000.1 Bac0021625 Acinetobacter baumannii strain AB186 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VARM00000000.1 Bac0021626 Pseudomonas nitroreducens strain DSM 9128 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas nitroreducens 46680 VASG00000000.1 Bac0021627 Escherichia sp. E2562 c49 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. E2562 2041646 VATM00000000.1 Bac0021628 Escherichia sp. E2748 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia sp. E2748 2044460 VATP00000000.1 Bac0021629 Maribacter algarum strain RZ26 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter algarum (ex Zhang et al. 2020) 2578118 VATY00000000.1 Bac0021630 Phragmitibacter flavus strain MG-N-17 Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Phragmitibacter Phragmitibacter flavus 2576071 VAUV00000000.1 Bac0021631 Maribacter sp. ACAM166 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter sp. ACAM166 2508996 VAUW00000000.1 Bac0021632 Pseudomonas aeruginosa strain MED02 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAUY00000000.1 Bac0021633 Pseudomonas aeruginosa strain MED07 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVD00000000.1 Bac0021634 Pseudomonas aeruginosa strain MED08 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVE00000000.1 Bac0021635 Pseudomonas aeruginosa strain MED09 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVF00000000.1 Bac0021636 Pseudomonas aeruginosa strain MED10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVG00000000.1 Bac0021637 Pseudomonas aeruginosa strain MED11 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVH00000000.1 Bac0021638 Pseudomonas aeruginosa strain MED13 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVJ00000000.1 Bac0021639 Pseudomonas aeruginosa strain MED15 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVL00000000.1 Bac0021640 Pseudomonas aeruginosa strain MED16 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVM00000000.1 Bac0021641 Pseudomonas aeruginosa strain MED24 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVU00000000.1 Bac0021642 Pseudomonas aeruginosa strain MED26 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVW00000000.1 Bac0021643 Pseudomonas aeruginosa strain MED27 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Negative Rod Yes 1 2 Aerobe 25 Heterotroph Mesophilic Multiple Free living Singles Animal; Human; Plant 287 VAVX00000000.1 Bac0021644 Streptomyces marianii strain ICN19 unitig_11_consensus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces marianii 1817406 VAWE00000000.1 Bac0021645 Streptococcus pneumoniae strain VB15252 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 VBQV00000000.1 Bac0021646 Streptococcus pneumoniae strain VB10735 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 VBQW00000000.1 Bac0021647 Deinococcus metallilatus strain MA1002-m5 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus metallilatus 1211322 VBRC00000000.1 Bac0021648 Cutibacterium avidum strain P313 166 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium avidum positive Rod No 1 Facultative anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 33010 VBRS00000000.1 Bac0021649 Ruoffia tabacinasalis strain FAM 24227 Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Ruoffia Ruoffia tabacinasalis 87458 VBSP00000000.1 Bac0021650 Lactobacillus delbrueckii subsp. bulgaricus strain FAM 21277 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 1585 VBSR00000000.1 Bac0021651 Lactobacillus delbrueckii subsp. lactis strain FAM 21784 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii Positive Rod No 1 1 Facultative anaerobe 42 Mesophilic Multiple Free living Chains 29397 VBSS00000000.1 Bac0021652 Lentilactobacillus parabuchneri strain FAM 23169 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus parabuchneri 152331 VBSV00000000.1 Bac0021653 Lactococcus raffinolactis strain FAM 23217 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Pseudolactococcus Pseudolactococcus raffinolactis Positive Cocci Facultative anaerobe fermented cabbage; fermented foods; fermented seeds; fish; kimchi; meat; milk; vegetables 1366 VBTC00000000.1 Bac0021654 Marinilactibacillus psychrotolerans strain FAM 24235 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Marinilactibacillus Marinilactibacillus psychrotolerans 191770 VBTE00000000.1 Bac0021655 Pediococcus acidilactici strain FAM 18969 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus acidilactici Positive Cocci No 1 Anaerobe 30 Chemoheterotroph Mesophilic Multiple Nonsporulating 1254 VBTF00000000.1 Bac0021656 Pediococcus pentosaceus strain FAM 19144 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Tetrads 1255 VBTG00000000.1 Bac0021657 Aliarcobacter cibarius strain 16CS0831-3 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cibarius 255507 VBUD00000000.1 Bac0021658 Halomonas urmiana strain TBZ3 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas urmiana 490901 VBUI00000000.1 Bac0021659 Maribacter aurantiacus strain KCTC 52409 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter aurantiacus 1882343 VBUK00000000.1 Bac0021660 Bacillus spizizenii strain Ubi033 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus spizizenii 96241 VBUQ00000000.1 Bac0021661 Staphylococcus aureus strain 0137-2003-2005 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VBVS00000000.1 Bac0021662 Staphylococcus aureus strain 0141-0204-2007 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VBVT00000000.1 Bac0021663 Staphylococcus aureus strain YNSA10 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VBVU00000000.1 Bac0021664 Pseudomonas edaphica strain RD25 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas edaphica 2006980 VBVZ00000000.1 Bac0021665 Lacticaseibacillus casei strain BCRC 17487 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus casei Positive Rod No 1 1 Facultative anaerobe 30 Mesophilic Specialized Free living Chains Nonsporulating 1582 VBWL00000000.1 Bac0021666 Culicoidibacter larvae strain CS-1 Bacillati Bacillota Culicoidibacteria Culicoidibacterales Culicoidibacteraceae Culicoidibacter Culicoidibacter larvae 2579976 VBWP00000000.1 Bac0021667 Acinetobacter baumannii strain SCPM-O-B-8558(3178) Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VBXH00000000.1 Bac0021668 Acinetobacter baumannii strain SCPM-O-B-8560(4554) Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VBXI00000000.1 Bac0021669 Acinetobacter baumannii strain SCPM-O-B-8566(4534) Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VBXN00000000.1 Bac0021670 Acinetobacter baumannii strain SCPM-O-B-8568(5824) Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii Negative Rod No 1 2 Aerobe 37 Heterotroph - Chemoheterotroph Mesophilic Multiple Free living Singles Human 470 VBXP00000000.1 Bac0021671 Cutibacterium acnes strain W65-307 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBXR00000000.1 Bac0021672 Cutibacterium acnes strain W65215 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBXU00000000.1 Bac0021673 Cutibacterium acnes strain T29350 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBXX00000000.1 Bac0021674 Cutibacterium acnes strain T29015 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBXY00000000.1 Bac0021675 Cutibacterium acnes strain T28840 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBXZ00000000.1 Bac0021676 Cutibacterium acnes strain T28794 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYB00000000.1 Bac0021677 Cutibacterium acnes strain T19834 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYC00000000.1 Bac0021678 Cutibacterium acnes strain P15-181 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYK00000000.1 Bac0021679 Cutibacterium acnes strain P15-178 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYM00000000.1 Bac0021680 Cutibacterium acnes strain P15-159 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYP00000000.1 Bac0021681 Cutibacterium acnes strain P15-112 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYR00000000.1 Bac0021682 Cutibacterium acnes strain P15-088 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYT00000000.1 Bac0021683 Cutibacterium acnes strain P15-014 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes Positive Rod No 1 1 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 1747 VBYZ00000000.1 Bac0021684 Streptomyces montanus strain NEAU-C151 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces montanus 2580423 VBZC00000000.1 Bac0021685 Vagococcus zengguangii strain MN-09 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus zengguangii 2571750 VCAP00000000.1 Bac0021686 Thalassotalea litorea strain MCCC 1K03283 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea litorea Gram-negative rod non-motile aerobic 29 mesophilic 2020715 VCBC00000000.1 Bac0021687 Salmonella enterica subsp. enterica serovar Newport strain SE76 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 108619 VCBP00000000.1 Bac0021688 Chryseobacterium indologenes strain 0243 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indologenes negative Rod aerobic 253 VCBR00000000.1 Bac0021689 Pseudomonas sp. ATCC 13985 3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis 587851 VCCM00000000.2 Bac0021690 Dyadobacter luticola strain T17 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter luticola 1979387 VCEJ00000000.1 Bac0021691 Staphylococcus aureus strain YNSA9 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCEN00000000.1 Bac0021692 Staphylococcus aureus strain YNSA11 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCEP00000000.1 Bac0021693 Staphylococcus aureus strain YNSA21 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCEQ00000000.1 Bac0021694 Staphylococcus aureus strain YNSA31 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCES00000000.1 Bac0021695 Staphylococcus aureus strain YNSA38 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCEU00000000.1 Bac0021696 Staphylococcus aureus strain YNSA46 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCEV00000000.1 Bac0021697 Staphylococcus aureus strain YNSA49 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCEW00000000.1 Bac0021698 Staphylococcus aureus strain YNSA51 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCEY00000000.1 Bac0021699 Staphylococcus aureus strain YNSA94 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCFG00000000.1 Bac0021700 Staphylococcus aureus strain YNSA98 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCFH00000000.1 Bac0021701 Staphylococcus aureus strain YNSA132 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCFO00000000.1 Bac0021702 Staphylococcus aureus strain YNSA154 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCFU00000000.1 Bac0021703 Staphylococcus aureus strain YNSA160 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCFV00000000.1 Bac0021704 Staphylococcus aureus strain YNSA210 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCFY00000000.1 Bac0021705 Staphylococcus aureus strain YNSA186 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCGA00000000.1 Bac0021706 Staphylococcus aureus strain YNSA343 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCGH00000000.1 Bac0021707 Staphylococcus aureus strain YNSA365 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCGI00000000.1 Bac0021708 Staphylococcus aureus strain YNSA382 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCGJ00000000.1 Bac0021709 Staphylococcus aureus strain YNSA425 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCGM00000000.1 Bac0021710 Staphylococcus aureus strain YNSA453 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCGP00000000.1 Bac0021711 Staphylococcus aureus strain YNSA521 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus Positive Cocci No 1 1 Facultative 3 Mesophilic HostAssociated Free living Clusters - Singles Animal; Human 1280 VCGT00000000.1 Bac0021712 Salmonella enterica subsp. enterica serovar Newport strain SE89 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 108619 VCIK00000000.1 Bac0021713 Salmonella enterica subsp. enterica serovar Heidelberg strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 611 VCIN00000000.1 Bac0021714 Actinomadura geliboluensis strain A8036 Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura geliboluensis Gram-positive non-motile aerobic 29 mesophilic spore-forming 882440 VCKZ00000000.1 Bac0021715 Mycoplasma mycoides subsp. mycoides strain Apf9 DS9223955-93_C3 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides 2103 VCPG00000000.1 Bac0021716 Mycoplasma mycoides subsp. mycoides strain AP108 DS9238258-94_C2 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides 2103 VCPH00000000.1 Bac0021717 Escherichia coli strain MEZEC42 134 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VCYJ00000000.1 Bac0021718 Escherichia coli strain MEZEC47 124 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VCYK00000000.1 Bac0021719 Campylobacter helveticus strain ACP175a Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter helveticus 28898 VDBQ00000000.1 Bac0021720 Campylobacter helveticus strain ACP123b Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter helveticus 28898 VDBS00000000.1 Bac0021721 Campylobacter helveticus strain ACP108a Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter helveticus 28898 VDBV00000000.1 Bac0021722 Campylobacter helveticus strain ACP102b Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter helveticus 28898 VDBW00000000.1 Bac0021723 Escherichia coli strain MEZEC54 91 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VDCR00000000.1 Bac0021724 Tamlana fucoidanivorans strain CW2-9 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Allotamlana Allotamlana fucoidanivorans 2583814 VDCS00000000.1 Bac0021725 Streptococcus salivarius strain UBSS01 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius Positive Cocci No Facultative anaerobe Mesophilic HostAssociated Free living Chains-Pairs Nonsporulating Human 1304 VDCW00000000.1 Bac0021726 Paracoccus haeundaensis strain CGMCC 1.8012 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus haeundaensis Gram-negative rod non-motile aerobic 25 mesophilic non-spore-forming 225362 VDDC00000000.1 Bac0021727 Bacillus cereus strain A8 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cereus Positive Rod Yes 1 1 Aerobe 25 Mesophilic Multiple Free living Chains Human 1396 VDDR00000000.1 Bac0021728 Salmonella enterica subsp. enterica serovar Chester strain HIY0035 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 149386 VDDU00000000.2 Bac0021729 Salmonella enterica subsp. enterica serovar Derby strain HIY0031 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28144 VDDW00000000.2 Bac0021730 Salmonella enterica subsp. enterica serovar Mbandaka strain Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 192954 VDDX00000000.2 Bac0021731 Salmonella enterica subsp. enterica serovar Derby strain HIY0018 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28144 VDEB00000000.2 Bac0021732 Salmonella enterica subsp. enterica serovar Derby strain HIY0016 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28144 VDED00000000.2 Bac0021733 Salmonella enterica subsp. enterica serovar London strain HIY0010 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 149390 VDEH00000000.2 Bac0021734 Salmonella enterica subsp. enterica serovar Give strain HIY0008 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 46626 VDEI00000000.2 Bac0021735 Klebsiella pneumoniae strain KP95 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 VDEL00000000.1 Bac0021736 Vibrio diabolicus strain CAIM 1802 CAIM1802_184 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio diabolicus 50719 VDEN00000000.1 Bac0021737 Arthrobacter sp. BB-1 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. BB-1 2584926 VDEV00000000.1 Bac0021738 Pseudomonas sp. Fig-3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Fig-3 2584927 VDEW00000000.1 Bac0021739 Klebsiella quasipneumoniae strain 34H Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae Negative Rod Facultative anaerobe Mesophilic HostAssociated Free living 1463165 VDFT00000000.1 Bac0021740 Rubellimicrobium roseum strain YIM 48858 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Rubellimicrobium Rubellimicrobium roseum 687525 VDFV00000000.1 Bac0021741 Amycolatopsis alkalitolerans strain SYSUP0005 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis alkalitolerans 2547244 VDFW00000000.1 Bac0021742 Klebsiella quasipneumoniae strain Kp1345 ctgKP1345_cotig_487 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella quasipneumoniae Negative Rod Facultative anaerobe Mesophilic HostAssociated Free living 1463165 VDFZ00000000.1 Bac0021743 Klebsiella pneumoniae strain hu585 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 573 VDGC00000000.1 Bac0021744 Pasteurellaceae bacterium USgator41 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium USgator41 2585018 VDGW00000000.1 Bac0021745 Pasteurellaceae bacterium UScroc31 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium UScroc31 2585020 VDGY00000000.1 Bac0021746 Pasteurellaceae bacterium Phil31 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurellaceae bacterium Phil31 2585022 VDHA00000000.1 Bac0021747 Testudinibacter sp. TR-2022 strain Cuba51 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Testudinibacter Testudinibacter sp. TR-2022 2585029 VDHC00000000.1 Bac0021748 Testudinibacter sp. TR-2022 strain BK311 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Testudinibacter Testudinibacter sp. TR-2022 2585029 VDHF00000000.1 Bac0021749 Corynebacterium tapiri strain LMG 28165 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tapiri microaerophile 1448266 VDHJ00000000.1 Bac0021750 Streptomyces mimosae strain 3MP-10 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces mimosae 2586635 VDLY00000000.2 Bac0021751 Escherichia coli strain KCJK8453 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VDMM00000000.1 Bac0021752 Deinococcus radiopugnans ATCC 19172 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans 585398 VDMO00000000.1 Bac0021753 Nocardioides albidus strain CCTCC AB 2015297 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides albidus Gram-positive sphere non-motile aerobic 29 mesophilic 1517589 VDMP00000000.1 Bac0021754 Klebsiella pneumoniae subsp. pneumoniae strain UCO-490 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae Negative Rod Yes 1 2 Facultative anaerobe 37 Chemoheterotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Nonsporulating 72407 VDMX00000000.1 Bac0021755 Miniimonas arenae strain KCTC 19750 Bacillati Actinomycetota Actinomycetes Micrococcales Beutenbergiaceae Miniimonas Miniimonas arenae Gram-positive rod non-motile microaerophile 29 mesophilic non-spore-forming 676201 VENP00000000.1 Bac0021756 Bacillus sp. CD3-5 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus sp. CD3-5 2587157 VEPX00000000.1 Bac0021757 Lactococcus cremoris strain DPC 6855 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 VERW00000000.1 Bac0021758 Lactococcus lactis subsp. lactis strain DPC 6756 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating 1360 VERX00000000.1 Bac0021759 Lactococcus cremoris strain DPC 169 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus cremoris Positive Cocci No 1 1 Facultative anaerobe 40 Mesophilic Multiple Free living Nonsporulating Human 1359 VERY00000000.1 Bac0021760 Escherichia coli strain KCJK8916 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESC00000000.1 Bac0021761 Escherichia coli strain KCJK8909 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESD00000000.1 Bac0021762 Escherichia coli strain KCJK8899 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESE00000000.1 Bac0021763 Escherichia coli strain KCJK8887 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESI00000000.1 Bac0021764 Escherichia coli strain KCJK8875 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESL00000000.1 Bac0021765 Escherichia coli strain KCJK8865 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESN00000000.1 Bac0021766 Escherichia coli strain KCJK8857 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESO00000000.1 Bac0021767 Escherichia coli strain KCJK8829 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESU00000000.1 Bac0021768 Escherichia coli strain KCJK8826 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESV00000000.1 Bac0021769 Escherichia coli strain KCJK8819 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESW00000000.1 Bac0021770 Escherichia coli strain KCJK8798 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VESZ00000000.1 Bac0021771 Escherichia coli strain KCJK8796 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VETA00000000.1 Bac0021772 Escherichia coli strain KCJK8787 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VETD00000000.1 Bac0021773 Escherichia coli strain KCJK8767 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VETH00000000.1 Bac0021774 Escherichia coli strain KCJK8755 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VETJ00000000.1 Bac0021775 Escherichia coli strain KCJK8700 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VETP00000000.1 Bac0021776 Escherichia coli strain KCJK8666 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VETV00000000.1 Bac0021777 Escherichia coli strain KCJK8658 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VETX00000000.1 Bac0021778 Escherichia coli strain KCJK8638 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEUA00000000.1 Bac0021779 Escherichia coli strain KCJK8610 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEUD00000000.1 Bac0021780 Escherichia coli strain KCJK8592 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEUG00000000.1 Bac0021781 Escherichia coli strain KCJK8577 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEUJ00000000.1 Bac0021782 Escherichia coli strain KCJK8509 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEUX00000000.1 Bac0021783 Escherichia coli strain KCJK8504 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEUY00000000.1 Bac0021784 Escherichia coli strain KCJK8498 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEVA00000000.1 Bac0021785 Escherichia coli strain KCJK8483 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEVD00000000.1 Bac0021786 Escherichia coli strain KCJK8465 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEVG00000000.1 Bac0021787 Escherichia coli strain KCJK8463 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VEVH00000000.1 Bac0021788 Campylobacter coli strain S871 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEVR00000000.1 Bac0021789 Campylobacter coli strain S18-090 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEVT00000000.1 Bac0021790 Campylobacter jejuni strain 18-164 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Negative Spirilla No 1 2 Microaerophile 0 Heterotroph Mesophilic Multiple Free living Chains - Singles 197 VEVZ00000000.1 Bac0021791 Campylobacter coli strain 158403 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEWA00000000.1 Bac0021792 Campylobacter coli strain 143970 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEWC00000000.1 Bac0021793 Campylobacter coli strain 143854 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEWD00000000.1 Bac0021794 Campylobacter coli strain 138449 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEWE00000000.1 Bac0021795 Campylobacter coli strain 48777 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEWG00000000.1 Bac0021796 Campylobacter coli strain 43371 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli Negative Microaerophile 195 VEWH00000000.1 Bac0021797 Brucella pecoris strain 08RB2639 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella pecoris soil 867683 VEWK00000000.1 Bac0021798 Ochrobactrum teleogrylli strain LCB8 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Ochrobactrum Ochrobactrum teleogrylli 2479765 VEWL00000000.1 Bac0021799 Shigella sonnei strain FDAARGOS_776 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella sonnei Negative Rod No 1 2 Facultative anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Pairs - Singles 624 VFAD00000000.1 Bac0021800 Salmonella enterica strain FDAARGOS_609 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Negative Spirilla No 1 2 Microaerophilic 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Singles 28901 VFAF00000000.1 Bac0021801 Escherichia coli strain A240 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli Negative Rod Yes 1 2 Facultative anaerobe 37 Mesophilic HostAssociated Free living Pairs - Singles 562 VFBH00000000.1 Bac0021802 Streptococcus pneumoniae strain 924 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae Positive Cocci No 1 1 Facultative anaerobe 30 Mesophilic Multiple Free living Chains - Pairs Human 1313 VFBI00000000.1 Bac0021803 Enterococcus faecium strain 4275 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFBX00000000.1 Bac0021804 Enterococcus faecium strain CCT11 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFBY00000000.1 Bac0021805 Enterococcus faecium strain SN504 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCE00000000.1 Bac0021806 Enterococcus faecium strain 349T Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCJ00000000.1 Bac0021807 Enterococcus faecium strain HPH9 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCK00000000.1 Bac0021808 Enterococcus faecium strain M410399 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCL00000000.1 Bac0021809 Enterococcus faecium strain M260840 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCN00000000.1 Bac0021810 Enterococcus faecium strain M299741 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCO00000000.1 Bac0021811 Enterococcus faecium strain H323 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCR00000000.1 Bac0021812 Enterococcus faecium strain 446511 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCS00000000.1 Bac0021813 Enterococcus faecium strain HST1 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCT00000000.1 Bac0021814 Enterococcus faecium strain VE40C2 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFCX00000000.1 Bac0021815 Enterococcus faecium strain 508T Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFDD00000000.1 Bac0021816 Enterococcus faecium strain SN71 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium Positive Cocci Facultative anaerobe fermented mare milk Human 1352 VFDG00000000.1 Bac0021817 Trichormus azollae Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Trichormus Trichormus azollae 551115 NC_014248.1 Bac0021818 Vibrio variabilis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio variabilis 990271 BBMS00000000.1 Bac0021819 Acidobacterium capsulatum ATCC 51196 "Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) is an aerobic, mesophilic, chemo-organotroph bacterium isolated from acidic mine drainage in Yanahara mine, Okayama, Japan. A. capsulatum is able to use a variety of carbon sources that span simple sugars to more complex substrates such as hemicellulose, cellulose, and chitin. It is capable of nitrate and nitrite reduction, but not N2 fixation or denitrification. It plays an important role in iron redox reactions and important contributions to the terrestrial carbon cycle. The presence of cellulose synthesis genes and a large class of novel high-molecular-weight excreted proteins suggests potential traits for desiccation resistance, biofilm formation, and/or contribution to soil structure. (adapated from PMID: 19201974). (HAMAP: ACIC5)" Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum ATCC 51196 Negative Bacilli No 1 2 Aerobic 30 Heterotroph- Chemoorganotroph Mesophilic Multiple Free living Singles Nonsporulating No 240015 NC_012483.1 Bac0021820 Vibrio campbellii strain 1114GL Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 35 Changjiang estuary; coastal sites; Marine 680 NZ_CP019635.1 Bac0021821 Vibrio campbellii strain BoB-90 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 35 Changjiang estuary; coastal sites; Marine 680 NZ_CP026319.1 Bac0021822 Vibrio campbellii strain LMB29 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 35 Changjiang estuary; coastal sites; Marine 680 NZ_CP019296.1 Bac0021823 Vibrio campbellii strain VIB391 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 35 Changjiang estuary; coastal sites; Marine 680 MNLF00000000.1 Bac0021824 Variovorax paradoxus B4 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Variovorax Variovorax paradoxus 1246301 NC_022247.1 Bac0021825 Tolypothrix tenuis PCC 7101 Bacillati Cyanobacteriota Cyanophyceae Nostocales Tolypothrichaceae Tolypothrix Tolypothrix tenuis 231146 NZ_AP018253.1 Bac0021826 Streptomyces albireticuli strain MDJK11 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albireticuli 1940 NZ_CP021744.1 Bac0021827 Streptomyces alboflavus strain MDJK44 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces alboflavus 67267 NZ_CP021748.1 Bac0021828 Streptomyces albus strain DSM 41398 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albus Positive 1888 NZ_CP010519.1 Bac0021829 Streptomyces alfalfae strain ACCC40021 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces alfalfae 1642299 NZ_CP015588.1 Bac0021830 Streptomyces alfalfae strain XY25 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces alfalfae 1642299 QYZT00000000.1 Bac0021831 Streptomyces alni strain CGMCC Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Actinacidiphila Actinacidiphila alni Gram-positive aerobic 29 mesophilic spore-forming 380248 FONG00000000.1 Bac0021832 Rhizobium tumorigenes strain 1078 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Arminella Arminella tumorigenes 2041385 NZ_CP117259.1 Bac0021833 Rhizorhabdus wittichii DC-6 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Rhizorhabdus Rhizorhabdus wittichii 1283312 NZ_CP021181.1 Bac0021834 Rhizorhabdus wittichii RW1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Rhizorhabdus Rhizorhabdus wittichii 392499 NC_009511.1 Bac0021835 Marivirga tractuosa H-43 Pseudomonadati Bacteroidota Cytophagia Cytophagales Marivirgaceae Marivirga Marivirga tractuosa H-43 1006 AP025330.1 Bac0021836 "Weeksella virosa CL345/78, 9751" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Weeksella Weeksella virosa "CL345/78, 9751" 1014 LR134404.1 Bac0021837 Halobaculum magnesiiphilum MGY-184 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum magnesiiphilum MGY-184 1017351 CP081958.1 Bac0021838 Neptunomonas concharum LHW37 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Neptunomonas Neptunomonas concharum LHW37 1031538 CP043869.1 Bac0021839 Campylobacter mucosalis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter mucosalis 1032067 CP012542.1 Bac0021840 Arcobacter molluscorum F98-3 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter molluscorum F98-3 1032072 CP032098.1 Bac0021841 Saccharothrix syringae Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix syringae 103733 CP034550.1 Bac0021842 Serinicoccus profundi 0714S6-1 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Serinicoccus Serinicoccus profundi 0714S6-1 1043205 CP042862.1 Bac0021843 Sphingomonas lutea JS5 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas lutea JS5 1045317 CP060718.1 Bac0021844 Kutzneria buriramensis A-T 1846 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kutzneria Kutzneria buriramensis A-T 1846 1045776 CP144375.1 Bac0021845 Natronomonas gomsonensis Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas gomsonensis 1046043 CP101323.1 Bac0021846 Klebsiella pneumoniae KC100 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae KC100 1049565 CP002910.1 Bac0021848 Megasphaera elsdenii LC1 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Megasphaera Megasphaera elsdenii LC1 1064535 CP027570.1 Bac0021849 Mycobacterium parakoreense 299 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacillus Mycolicibacillus parakoreensis 299 1069221 CP092365.1 Bac0021850 Legionella cardiaca H63 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella cardiaca H63 negative Rod Animal; Human 1071983 CP119078.1 Bac0021851 Tenacibaculum maritimum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum maritimum 107401 CP138494.1 Bac0021852 "Tenacibaculum maritimum R-2, R2" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum maritimum "R-2, R2" 107401 CP138495.1 Bac0021853 Streptomyces manipurensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces manipurensis 1077945 CP186950.1 Bac0021854 Arcobacter pacificus SW028 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter pacificus SW028 1080223 CP035928.1 Bac0021855 "Rhodospirillum rubrum S 1, S1" Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Rhodospirillum Rhodospirillum rubrum "S 1, S1" 1085 CP077803.1 Bac0021856 Allofrancisella frigidaquae Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Allofrancisella Allofrancisella frigidaquae 1085644 CP038017.1 Bac0021857 Allofrancisella inopinata Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Allofrancisella Allofrancisella inopinata 1085647 CP038241.1 Bac0021858 "Francisella hispaniensis F62, FhSp1, FnSp1" Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella hispaniensis "F62, FhSp1, FnSp1" 1088883 CP018093.1 Bac0021859 Dickeya solani Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya solani 1089444 CP015137.1 Bac0021860 Mannheimia ovis ZY170218 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia pernigra ZY170218 111844 CP046531.1 Bac0021861 Mannheimia pernigra 17CN0883 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia pernigra 17CN0883 111844 CP055305.1 Bac0021862 Actinotignum schaalii B 5329 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinotignum Actinotignum schaalii B 5329 1120932 CP140666.1 Bac0021863 Aerococcus urinaeequi PUE Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Aerococcus Aerococcus urinaeequi PUE 1120952 CP014162.1 Bac0021864 Butyricimonas virosa MT12 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas virosa MT12 1121130 CP102269.1 Bac0021865 Legionella geestiana 1308 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella geestiana 1308 1122161 CP038271.1 Bac0021866 Leptotrichia shahii LB 37 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia shahii LB 37 1122172 AP019827.1 Bac0021867 Methylophaga marina 222 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Methylophaga Methylophaga marina 222 1122235 AP027741.1 Bac0021868 Oligella ureolytica C379 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Oligella Oligella ureolytica C379 1122619 CP065725.1 Bac0021869 Rathayibacter toxicus CS14 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter toxicus CS14 1123052 CP061742.1 Bac0021870 Ruminococcus gauvreauii CCRI-16110 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus gauvreauii CCRI-16110 1123075 CP102290.1 Bac0021871 Sporomusa ovata H1 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporomusa Sporomusa ovata H1 1123288 CP146301.1 Bac0021872 Streptococcus mutans EML 1738 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans EML 1738 1123310 LS483349.1 Bac0021873 "Streptococcus pyogenes SF 130, T1, SF 130/13, TI" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pyogenes "SF 130, T1, SF 130/13, TI" 1123316 LN831034.1 Bac0021874 Vibrio gazogenes PB1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gazogenes PB1 1123492 CP092587.1 Bac0021875 Vibrio porteresiae MSSRF30 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio porteresiae MSSRF30 1123496 AP024895.1 Bac0021876 Vibrio rhizosphaerae MSSRF3 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio rhizosphaerae MSSRF3 1123497 AP024903.1 Bac0021877 Vitreoscilla stercoraria Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Vitreoscilla Vitreoscilla stercoraria 1123499 CP091512.1 Bac0021878 Treponema parvum FO2FA Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema parvum FO2FA 1125711 CP054142.1 Bac0021879 Halobellus ramosii S2FP14 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus inordinatus S2FP14 1126236 CP101825.1 Bac0021880 Sphaerochaeta associata GLS2 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta associata GLS2 1129264 CP094929.1 Bac0021881 Maribacter aestuarii GY20 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter aestuarii GY20 1130723 CP107031.2 Bac0021882 Pseudoramibacter alactolyticus DO-4 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Pseudoramibacter Pseudoramibacter alactolyticus DO-4 113287 CP194340.1 Bac0021883 Geoglobus ahangari 234 Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae Geoglobus Geoglobus ahangari 234 113653 CP011267.1 Bac0021884 Rhizobium bangladeshense BLR175 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium bangladeshense BLR175 1138189 CP071612.1 Bac0021885 Rhizobium binae BLR195 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium binae BLR195 1138190 CP071604.1 Bac0021886 Rhizobium lentis BLR27 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium lentis BLR27 1138194 CP071454.1 Bac0021887 Paraoerskovia sediminicola H25-14 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Paraoerskovia Paraoerskovia sediminicola H25-14 1138587 AP027729.1 Bac0021888 Pediococcus inopinatus 236b Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus inopinatus 236b 114090 CP019981.1 Bac0021889 Massilia putida 6NM-7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia putida 6NM-7 1141883 CP019038.1 Bac0021890 Ignicoccus pacificus LPC 33 Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignicoccus Ignicoccus pacificus LPC 33 114376 CP006868.1 Bac0021891 Mogibacterium neglectum P9a-h Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Mogibacterium Mogibacterium neglectum P9a-h 114528 CP128647.1 Bac0021892 Mycoplasmopsis equigenitalium T37 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis equigenitalium T37 114883 CP101808.1 Bac0021893 Bifidobacterium scardovii Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium scardovii 1150461 AP012331.1 Bac0021894 "Halomonas neptunia A1, BAA-805, Eplume 1" Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella neptunia "A1, BAA-805, Eplume 1" 115551 CP140255.1 Bac0021895 Leuconostoc gasicomitatum TB1-10 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc gasicomitatum TB1-10 115778 FN822744.1 Bac0021896 Kosakonia sacchari SP1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia sacchari SP1 1158459 CP007215.3 Bac0021897 Streptomyces coeruleorubidus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces coeruleorubidus 116188 CP023694.1 Bac0021898 Weissella diestrammenae ORY33 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella diestrammenae ORY33 1162633 CP060724.1 Bac0021899 Naasia aerilata 5116S-4 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Naasia Naasia aerilata 5116S-4 1162966 AP027731.1 Bac0021900 Cronobacter condimenti 1330 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter condimenti 1330 1163710 CP012264.1 Bac0021901 "Burkholderia glumae MD1, P1-22-1" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia glumae "MD1, P1-22-1" Yes 1176492 CP009435.1 Bac0021902 Luteimonas granuli Gr-4 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas granuli Gr-4 1176533 CP042218.1 Bac0021903 Mucilaginibacter jinjuensis YC7004 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter jinjuensis YC7004 1176721 CP117167.1 Bac0021904 Rhodovulum sulfidophilum W4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Rhodovulum Rhodovulum sulfidophilum W4 1188256 CP015418.1 Bac0021905 "Corynebacterium aquatimens clone 1-1491, L-2012475" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium aquatimens "clone 1-1491, L-2012475" 1190508 CP046980.1 Bac0021907 Zymomonas mobilis subsp. pomaceae Z 6 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Zymomonadaceae Zymomonas Zymomonas mobilis Z 6 120044 CP003704.1 Bac0021908 Pectobacterium aroidearum Ec106 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium aroidearum Ec106 1201031 CP166097.1 Bac0021909 Moritella marina MP-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Moritellaceae Moritella Moritella marina MP-1 1202962 CP044399.1 Bac0021910 Brucella pinnipedialis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella pinnipedialis 120576 CP002078.1 Bac0021911 "Methanobrevibacter acididurans ATM, MCM B 613, OCM 804" Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter acididurans "ATM, MCM B 613, OCM 804" 120963 CP166991.1 Bac0021912 Spirosoma aerolatum PR1012K Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma aerolatum PR1012K 1211326 CP020104.1 Bac0021913 Tumebacillus algifaecis THMBR28 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Tumebacillus Tumebacillus algifaecis THMBR28 1214604 CP022657.1 Bac0021914 "Pseudomonas chlororaphis subsp. aureofaciens EIII.9.25.1, L8" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas chlororaphis "EIII.9.25.1, L8" 1215095 CP027720.1 Bac0021915 Pseudomonas mucidolens 37 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mucidolens 37 1215111 LS483433.1 Bac0021917 Virgibacillus natechei FarD Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus natechei FarD 1216297 CP110224.1 Bac0021918 Edwardsiella hoshinae 2-78 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella hoshinae 2-78 1216966 CP065626.1 Bac0021919 "Lactobacillus delbrueckii subsp. jakobsenii CHCC13979, ZN7a-9" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii "CHCC13979, ZN7a-9" 1217420 CP018218.1 Bac0021920 Acinetobacter johnsonii 3865/60 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii 3865/60 1217663 CP065666.1 Bac0021922 Arachnia propionica 699 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Arachnia Arachnia propionica 699 1218109 CP146373.1 Bac0021923 "Rhodococcus rhodochrous 372, KMRh" Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus rhodochrous "372, KMRh" 1219024 LT906450.1 Bac0021924 Rhodococcus triatomae Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus triatomae 1219026 CP048814.1 Bac0021925 Comamonas terrigena V‚àö¬©ron 31 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas terrigena V‚àö¬©ron 31 1219032 AP019749.1 Bac0021926 Vibrio rarus RW22 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio rarus RW22 1219063 AP024900.1 Bac0021927 Gimesia maris 534-30 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia maris 534-30 122 CP043931.1 Bac0021928 Gimesia maris CA11 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia maris CA11 122 CP036353.1 Bac0021929 "Actinoplanes ianthinogenes A/1668/18V, A1668" Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes ianthinogenes "A/1668/18V, A1668" 122358 AP023356.1 Bac0021930 Vibrio campbellii Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio campbellii 1224742 CP006605.1 Bac0021931 Paludibacterium paludis KBP-21 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Paludibacterium Paludibacterium paludis KBP-21 1225769 CP069161.1 Bac0021932 Mycobacterium holsaticum 1406 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium holsaticum 1406 1226752 CP080998.1 Bac0021933 Streptomyces rapamycinicus AYB-994 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rapamycinicus AYB-994 1226757 CP085193.1 Bac0021934 Piscirickettsia salmonis LF-89 Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Piscirickettsiaceae Piscirickettsia Piscirickettsia salmonis LF-89 1227812 CP011849.2 Bac0021935 Thalassotalea piscium T202 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea piscium T202 1230533 AP027362.1 Bac0021936 Corynebacterium ihumii GD7 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ihumii GD7 1232427 CP063190.1 Bac0021937 Endozoicomonas euniceicola EF212 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Endozoicomonadaceae Endozoicomonas Endozoicomonas euniceicola EF212 1234143 CP103300.1 Bac0021938 Porphyromonas cangingivalis Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas cangingivalis 1236520 LR134506.1 Bac0021939 Salmonella enterica subsp. enterica Mutton Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica Mutton 1236523 CP009102.1 Bac0021940 "Pseudomonas aeruginosa Boston 41501, 41501" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa "Boston 41501, 41501" 1236529 CP011857.1 Bac0021941 Staphylococcus epidermidis Fussel Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Fussel 1236978 AP019721.1 Bac0021942 "Pasteurella multocida subsp. gallicida IV-739, 739" Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida "IV-739, 739" 123812 LR134298.1 Bac0021943 "Haemophilus influenzae 644, HK 403" Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae "644, HK 403" 123833 CP085951.1 Bac0021944 Mycobacterium celeriflavum AFPC-000207 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium celeriflavum AFPC-000207 1249101 AP022591.1 Bac0021945 Raoultella electrica 1GB Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella electrica 1GB negative Rod facultative anaerobe hospital environments; plants; soil; water 1259973 CP041247.1 Bac0021946 Halodesulfovibrio aestuarii JBL Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio aestuarii JBL 126333 CP192217.1 Bac0021947 Halodesulfovibrio aestuarii W218 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio aestuarii W218 126333 CP192218.1 Bac0021949 "Mycobacterium doricum Fi-13295, ID 3931" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium doricum "Fi-13295, ID 3931" 126673 AP022605.1 Bac0021950 "Mycoplasmoides gallisepticum X95, PG 31" Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides gallisepticum "X95, PG 31" 1267002 LS991952.1 Bac0021951 "Vibrio mimicus 161, 269-80" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus "161, 269-80" 1267896 CP014042.2 Bac0021952 Frondihabitans sucicola GRS42 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Frondihabitans Frondihabitans sucicola GRS42 1268041 AP027732.1 Bac0021953 Streptococcus constellatus subsp. viborgensis SK1359 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus constellatus SK1359 1272518 CP066055.1 Bac0021954 Kytococcus sedentarius DM 51 Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus sedentarius DM 51 skin 1276 CP069495.1 Bac0021955 "Kytococcus sedentarius 541, 54" Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus sedentarius "541, 54" skin 1276 CP066015.1 Bac0021956 Spiroplasma ixodetis Y32 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma ixodetis Y32 1276219 CP127039.1 Bac0021957 Uruburuella testudinis 07_0D624 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Uruburuella Uruburuella testudinis 07_0D624 1282863 CP091508.1 Bac0021958 Tessaracoccus defluvii Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Tessaracoccus Tessaracoccus defluvii 1285901 CP060789.1 Bac0021959 Mycobacterium sediminis Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sediminis 1286180 AP022588.1 Bac0021960 Mycobacterium arabiense Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium arabiense 1286181 AP022593.1 Bac0021961 Alistipes senegalensis JC50 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes senegalensis JC50 1288121 CP102252.1 Bac0021962 Diaphorobacter aerolatus 8604S-37 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter aerolatus 8604S-37 1288495 CP060783.1 Bac0021963 Ornithinimicrobium flavum Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium flavum 1288636 CP038213.1 Bac0021964 Pseudomonas putida 19391 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas putida 19391 1295132 CP096581.1 Bac0021965 Arcanobacterium phocisimile 2698 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium phocisimile 2698 1302235 CP070228.1 Bac0021966 Paracoccus denitrificans Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus denitrificans 1302247 CP035090.1 Bac0021967 Rhodococcus qingshengii djl-6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus qingshengii djl-6 1303681 CP096563.1 Bac0021968 Mycobacterium rufum JS14 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium rufum JS14 1305629 CP092427.2 Bac0021969 Mycobacterium crocinum czh-42 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium crocinum czh-42 1305862 CP092362.2 Bac0021970 Fusobacterium hwasookii Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii 1307441 CP060115.1 Bac0021971 Fusobacterium hwasookii Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii 1307443 CP013336.1 Bac0021972 Komagataeibacter sucrofermentans Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Komagataeibacter Komagataeibacter sucrofermentans 1307942 CP137157.1 Bac0021973 Streptococcus sobrinus SL1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sobrinus SL1 1310 CP029490.1 Bac0021974 Streptococcus sobrinus Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sobrinus 1310 LS483381.1 Bac0021975 Flavobacterium gyeonganense HME7524 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium gyeonganense HME7524 1310418 CP121112.1 Bac0021976 "Corynebacterium capitovis S108/98/2, 980914, S108/98/2*" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium capitovis "S108/98/2, 980914, S108/98/2*" 131081 CP047117.1 Bac0021978 "Corynebacterium felinum M714/95/5, M714-95-5, 980915" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium felinum "M714/95/5, M714-95-5, 980915" 131318 CP047209.1 Bac0021979 Klebsiella pneumoniae PZH Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae PZH 1316938 CP157585.1 Bac0021980 Blautia hansenii "Blautia hansenii is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites across different species, including the human gut, oral cavity, and skin. As an Obligate Anaerobe, Blautia hansenii requires an oxygen-free environment to survive and grow.The Gram-positive characteristic of Blautia hansenii indicates the presence of a thick peptidoglycan layer in its cell wall, which provides rigidity and maintains the cell's shape. The rod-shaped morphology allows for efficient absorption of nutrients and interaction with the surrounding environment. As a mesophilic microbe, Blautia hansenii grows optimally at temperatures between 20-45°C, making it well-suited for the human body's temperature range. As a Chemoheterotroph, Blautia hansenii relies on organic compounds for energy and carbon sources, breaking down complex molecules into simpler ones to sustain its growth and metabolic processes. Its presence in various body sites, including the gut, oral cavity, and skin, highlights its adaptability and ability to thrive in diverse environments. The obligate anaerobic nature of Blautia hansenii means it is highly sensitive to oxygen, which can be toxic to the microbe. This requirement for an oxygen-free environment is crucial for its survival and is often achieved through the formation of biofilms or symbiotic relationships with other microbes. Blautia hansenii plays a significant role in the human gut microbiome, contributing to the fermentation of complex carbohydrates and production of short-chain fatty acids, which provide energy to the host. Its ability to modulate the immune system and influence metabolic processes has led to research into its potential therapeutic applications, particularly in the treatment of metabolic disorders and inflammatory diseases." Eubacteria Firmicutes Clostridiales Lachnospiraceae Blautia Blautia hansenii Positive Anaerobe 1322 CP022413.2 Bac0021981 Streptomonospora nanhaiensis 12A09 Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Streptomonospora Streptomonospora nanhaiensis 12A09 1323731 CP113264.1 Bac0021982 Streptomyces alboniger P-638 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces alboniger P-638 132473 CP023695.1 Bac0021983 Bradyrhizobium guangxiense Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium guangxiense 1325115 CP022219.1 Bac0021984 Vibrio cortegadensis C 16.17 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio cortegadensis C 16.17 1328770 AP025472.1 Bac0021985 Paenibacillus sophorae S27 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sophorae S27 1333845 CP076607.1 Bac0021986 Burkholderia contaminans J2956 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia contaminans J2956 1334628 CP090640.1 Bac0021987 Mycobacterium shottsii Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium shottsii 133549 AP022572.1 Bac0021988 "Mycobacterium brumae CR-270, 14 401 0001" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium brumae "CR-270, 14 401 0001" 1335619 CP104302.1 Bac0021989 "Streptococcus equi subsp. equi C 15, C15" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus equi "C 15, C15" 1336 LR134389.1 Bac0021990 Corynebacterium atrinae Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium atrinae 1336740 CP046977.1 Bac0021991 Corynebacterium freneyi 20395347 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium freneyi 20395347 134034 CP083645.1 Bac0021992 Corynebacterium freneyi 6695110 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium freneyi 6695110 134034 CP047357.1 Bac0021993 Cupriavidus oxalaticus Ox1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus oxalaticus Ox1 1349762 CP069811.1 Bac0021994 Selenomonas dianae Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Centipeda Centipeda dianae 135079 CP128650.1 Bac0021995 Achromobacter deleyi Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Achromobacter Achromobacter deleyi 1353891 CP065997.1 Bac0021996 Enterobacter kobei Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter kobei 1354261 AP024590.1 Bac0021997 Polaribacter huanghezhanensis SM1202 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter huanghezhanensis SM1202 1354726 CP128595.1 Bac0021998 Arcobacter lanthieri Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter lanthieri 1355374 CP053839.1 Bac0021999 Cronobacter sakazakii F37/50 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter sakazakii F37/50 1367848 CP012253.1 Bac0022000 Hymenobacter qilianensis Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter qilianensis 1385715 CP060784.1 Bac0022002 Caldicellulosiruptor morganii Rt8.B8 Bacillati Bacillota Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor morganii Rt8.B8 1387555 CP113865.1 Bac0022003 Campylobacter lari Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari 1388750 CP007776.2 Bac0022004 Agromyces marinus H23-8 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces marinus H23-8 1389020 CP087879.1 Bac0022005 Escherichia coli EDL 931 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli EDL 931 1389955 CP038405.1 Bac0022006 Catalinimonas niigatensis A6F-52 Pseudomonadati Bacteroidota Cytophagia Cytophagales Catalimonadaceae Catalinimonas Catalinimonas niigatensis A6F-52 1397264 CP119422.1 Bac0022007 Bradyrhizobium septentrionale 1S1 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium septentrionale 1S1 1404411 CP088285.1 Bac0022008 Corynebacterium deserti GIMN1.010 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium deserti GIMN1.010 1408191 CP009220.1 Bac0022009 Acholeplasma hippikon Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma hippikon 1408416 LR215050.1 Bac0022010 Thermomonospora amylolytica Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Thermomonospora Thermomonospora amylolytica 1411117 CP032402.1 Bac0022011 Streptomyces ferrugineus HV38 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces ferrugineus HV38 1413221 CP063373.1 Bac0022012 Corynebacterium jeddahense JCB Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium jeddahense JCB 1414719 CP063194.1 Bac0022013 "Photorhabdus laumondii TT01, HT1" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus laumondii "TT01, HT1" 141679 CP024901.1 Bac0022014 Marinobacter similis A3d10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter similis A3d10 1420916 CP007151.1 Bac0022016 "Mycobacterium anyangense QIA-38, QIA-38(NTM-9)" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium anyangense "QIA-38, QIA-38(NTM-9)" 1431246 AP022620.1 Bac0022017 Eubacterium sulci Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae [Eubacterium] sulci 143393 CP012068.1 Bac0022018 Vibrio tritonius AM2 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tritonius AM2 1435069 AP014636.1 Bac0022019 Vibrio tritonius Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio tritonius 1435069 CP152307.1 Bac0022020 Simiduia litorea Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Simiduia Simiduia litorea 1435348 AP031497.1 Bac0022021 Streptomyces leeuwenhoekii C34 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces leeuwenhoekii C34 1437453 LN831790.1 Bac0022022 Mobiluncus holmesii V125 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus holmesii V125 144178 CP068112.1 Bac0022023 Corynebacterium afermentans subsp. lipophilum T 18502 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium afermentans T 18502 144184 CP046530.1 Bac0022024 Moraxella nonliquefaciens A1920 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella nonliquefaciens A1920 1441929 CP065728.1 Bac0022025 Nitrosomonas stercoris KYUHI-S Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Nitrosomonas Nitrosomonas stercoris KYUHI-S 1444684 AP019755.1 Bac0022026 Paracoccus yeei G 1212 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus yeei G 1212 1446473 CP038056.1 Bac0022027 Amycolatopsis rhabdoformis SB026 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis rhabdoformis SB026 1448059 CP142149.1 Bac0022028 Campylobacter corcagiensis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter corcagiensis 1448857 CP053842.1 Bac0022029 Burkholderia vietnamiensis TVV75 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia vietnamiensis TVV75 1449978 CP009631.1 Bac0022030 Alicyclobacillus acidoterrestris GD3B Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus acidoterrestris GD3B 1450 CP080467.1 Bac0022031 Methanothermobacter thermautotrophicus Z-245 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter thermautotrophicus Z-245 145262 CP064337.1 Bac0022032 "Methanothermobacter thermautotrophicus Delta H, DeltaH" Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter thermautotrophicus "Delta H, DeltaH" 145262 CP064324.1 Bac0022033 Methanothermobacter marburgensis Marburg Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter marburgensis Marburg 145263 CP069376.1 Bac0022034 Halovivax limisalsi IC38 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax limisalsi IC38 1453760 CP095757.1 Bac0022035 Alicyclobacillus cycloheptanicus SCH Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Paenalicyclobacillus Paenalicyclobacillus cycloheptanicus SCH 1457 CP067097.1 Bac0022036 Thermomonas carbonis GZ436 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Thermomonas Thermomonas carbonis GZ436 1463158 CP060719.1 Bac0022037 "Paenibacillus larvae Med-540, 846" Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae "Med-540, 846" positive Rod Yes facultative anaerobe beehives; gut; hive debris 1464 CP019687.1 Bac0022038 Paenibacillus larvae Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae positive Rod Yes facultative anaerobe beehives; gut; hive debris 1464 CP019659.1 Bac0022039 Paenibacillus larvae Eric V Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae Eric V positive Rod Yes facultative anaerobe beehives; gut; hive debris 1464 CP019717.1 Bac0022040 Paenibacillus larvae 04-309 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus larvae 04-309 positive Rod Yes facultative anaerobe beehives; gut; hive debris 1464 CP019652.1 Bac0022041 Alistipes ihumii AP11 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes ihumii AP11 1470347 CP102294.1 Bac0022042 Butyricimonas faecihominis 180-3 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas faecihominis 180-3 1472416 CP043836.1 Bac0022043 "Virgibacillus pantothenticus B 21, 3028" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Virgibacillus Virgibacillus pantothenticus "B 21, 3028" 1473 CP073011.1 Bac0022044 Paenibacillus guangzhouensis GSS02 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus guangzhouensis GSS02 1473112 CP045293.1 Bac0022045 Alicyclobacillus dauci 4F Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus dauci 4F 1475485 CP104064.1 Bac0022046 Heyndrickxia vini Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia vini 1476025 CP065425.1 Bac0022047 Halovivax cerinus IC35 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halovivax Halovivax cerinus IC35 1487865 CP101824.1 Bac0022048 Clostridium formicaceticum A1 Bacillati Bacillota Clostridia Peptostreptococcales Natronincolaceae Andreesenella Andreesenella formicacetica A1 1497 CP020559.1 Bac0022049 "Streptococcus lutetiensis D56, S182" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus lutetiensis "D56, S182" positive Coccus gastrointestinal tracts of ruminants 150055 CP068056.1 Bac0022050 "Clostridium pasteurianum McClung 2300, 5" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium pasteurianum "McClung 2300, 5" positive anaerobic 1501 CP013018.1 Bac0022051 Arcanobacterium pinnipediorum 2710 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium pinnipediorum 2710 1503041 CP099547.1 Bac0022052 Thermotoga caldifontis AZM44c09 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga caldifontis AZM44c09 1508419 AP014509.1 Bac0022053 Thermotoga profunda AZM34c06 Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga profunda AZM34c06 1508420 AP014510.1 Bac0022054 Rouxiella chamberiensis 130333 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Rouxiella Rouxiella chamberiensis 130333 1513468 CP114058.1 Bac0022055 "Paucilactobacillus suebicus WC-t7-2, X" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus suebicus "WC-t7-2, X" 152335 CP158670.1 Bac0022056 Thalassotalea ponticola GJSW-36 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea ponticola GJSW-36 1523392 CP166871.1 Bac0022057 "Burkholderia dolosa PC534, R-3207" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia dolosa "PC534, R-3207" Yes 152500 CP085967.1 Bac0022058 "Burkholderia dolosa AU0645, R-5670" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia dolosa "AU0645, R-5670" Yes 152500 CP082882.1 Bac0022059 Microbacterium endophyticum PA15 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium endophyticum PA15 1526412 CP049255.1 Bac0022060 Geodermatophilus sp. Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus sp. DSM 44513 1528104 CP135963.1 Bac0022061 Qipengyuania sediminis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Qipengyuania Qipengyuania sediminis 1532023 CP037948.1 Bac0022062 Metallosphaera tengchongensis Ric-A Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera tengchongensis Ric-A 1532350 CP049074.1 Bac0022063 Mycobacterium sarraceniae DL734 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sarraceniae DL734 1534348 AP022595.1 Bac0022064 Mycobacterium helvum DL739 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium helvum DL739 1534349 AP022596.1 Bac0022065 Vibrio hyugaensis 090810a Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio hyugaensis 090810a 1534743 CP025794.1 Bac0022066 Aquitalea aquatilis THG-DN7.12 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Aquitalea Aquitalea aquatilis THG-DN7.12 1537400 CP039731.1 Bac0022067 Terrisporobacter mayombei SFC-5 Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Terrisporobacter Terrisporobacter mayombei SFC-5 1541 CP101637.1 Bac0022068 Sphingomonas morindae NBD5 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas morindae NBD5 1541170 CP084930.1 Bac0022069 Frateuria soli 5GH9-11 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Frateuria Frateuria soli 5GH9-11 1542730 CP088252.1 Bac0022070 Arachnia rubra SK-1 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Arachnia Arachnia rubra SK-1 1547448 AP024463.1 Bac0022071 Nesterenkonia pannonica BV-35 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia pannonica BV-35 1548602 CP080575.1 Bac0022072 Mucilaginibacter gotjawali SA3-7 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter gotjawali SA3-7 1550579 AP017313.1 Bac0022073 Streptomyces yatensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces yatensis 155177 CP072941.1 Bac0022074 Agarivorans aestuarii hydD622 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Agarivorans Agarivorans aestuarii hydD622 1563703 AP023033.1 Bac0022075 Arcobacter faecis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter faecis 1564138 CP053837.1 Bac0022076 Actinobacillus arthritidis P. 907 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus arthritidis P. 907 157339 CP103833.1 Bac0022077 Leptotrichia wadei LB 16 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei LB 16 157687 AP019829.2 Bac0022078 "Leptotrichia hofstadii L48, LB 23" Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii "L48, LB 23" 157688 AP019823.1 Bac0022079 Pseudoleptotrichia goodfellowii LB 57 Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii LB 57 157692 AP019822.1 Bac0022080 Halosiccatus urmianus DC8 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium urmianum DC8 1586233 CP084090.1 Bac0022081 Rhizobium indigoferae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Rhizobium Rhizobium indigoferae 158891 CP140635.1 Bac0022082 Ensifer kummerowiae Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium kummerowiae 158892 CP140301.1 Bac0022083 Planococcus faecalis AJ003 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Planococcus Planococcus faecalis AJ003 1598147 CP019401.1 Bac0022084 "Nocardioides aquaticus EL-17K, EL-17K T" Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides aquaticus "EL-17K, EL-17K T" 160826 CP075371.1 Bac0022085 Loigolactobacillus coryniformis subsp. coryniformis 34 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Loigolactobacillus Loigolactobacillus coryniformis 34 1610 CP017713.1 Bac0022086 "Actinoalloteichus fjordicus ADI 127-17, MP127-17" Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinoalloteichus Actinoalloteichus fjordicus "ADI 127-17, MP127-17" 1612552 CP016076.1 Bac0022087 "Actinoalloteichus fjordicus GBA 129-24, MP129-24" Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinoalloteichus Actinoalloteichus fjordicus "GBA 129-24, MP129-24" 1612552 CP016077.1 Bac0022088 Corynebacterium singulare Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium singulare 161899 CP010827.1 Bac0022089 Treponema phagedenis B43.1 Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema phagedenis B43.1 162 CP042818.1 Bac0022090 Acetobacter oryzifermentans Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter oryzifermentans 1633874 CP011120.1 Bac0022091 Burkholderia savannae MSMB266 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia savannae MSMB266 1637837 CP013417.1 Bac0022092 Cytobacillus ciccensis 5L6 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Cytobacillus Cytobacillus solani 5L6 1637975 CP041305.1 Bac0022093 Listeria ivanovii subsp. ivanovii Li 1979 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria ivanovii Li 1979 positive 1638 LT906478.1 Bac0022094 Listeria innocua 58 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria innocua 58 positive 1642 CP117229.1 Bac0022095 Listeria innocua Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria innocua positive 1642 CP095730.1 Bac0022096 Polaribacter marinaquae RZW3-2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter marinaquae RZW3-2 1642819 CP150496.1 Bac0022097 Listeria welshimeri V8 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria welshimeri V8 1643 LT906444.1 Bac0022098 Nocardioides ungokensis Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides ungokensis 1643322 CP059164.1 Bac0022099 Vulcanisaeta souniana IC-059 Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta souniana IC-059 164452 AP026830.1 Bac0022100 Erysipelothrix rhusiopathiae Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelothrix Erysipelothrix rhusiopathiae positive Rod soil; water 1648 LR134439.1 Bac0022101 Treponema saccharophilum PB Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema saccharophilum PB 165 AP025288.1 Bac0022102 Campylobacter sputorum subsp. bovis RM 8705 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sputorum RM 8705 1660072 CP019685.1 Bac0022103 Dermabacter jinjuensis 32 Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Dermabacter Dermabacter jinjuensis 32 1667168 CP023482.1 Bac0022104 Alkalicoccus halolimnae BZ-SZ-XJ29 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Alkalicoccus Alkalicoccus halolimnae BZ-SZ-XJ29 1667239 CP144914.1 Bac0022105 "Streptococcus anginosus subsp. anginosus Havill III. (R. Lancefield F68A), Havill III, F68A" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus anginosus "Havill III. (R. Lancefield F68A), Havill III, F68A" 1671923 CP085939.1 Bac0022106 Cuniculiplasma divulgatum S5 Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Cuniculiplasmataceae Cuniculiplasma Cuniculiplasma divulgatum S5 1673428 LT671858.1 Bac0022107 Cuniculiplasma divulgatum Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Cuniculiplasmataceae Cuniculiplasma Cuniculiplasma divulgatum 1673428 LT719092.1 Bac0022108 Marvinbryantia formatexigens I-52 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Marvinbryantia Marvinbryantia formatexigens I-52 168384 CP102268.1 Bac0022109 Bifidobacterium dentium B764 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium dentium B764 active carious lesions; fecal samples; oral biofilm; oral cavity; oral environment; saliva 1689 LR134349.1 Bac0022110 Vitreoscilla massiliensis Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Vitreoscilla Vitreoscilla massiliensis 1689272 CP091511.1 Bac0022111 Phycicoccus endophyticus JP6SC6 Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Phycicoccus Phycicoccus endophyticus JP6SC6 1690220 CP060712.1 Bac0022112 Corynebacterium ammoniagenes 9.6 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ammoniagenes 9.6 1697 CP009244.1 Bac0022113 Natrinema halophilum YPL8 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema halophilum YPL8 1699371 CP058601.1 Bac0022114 "Arthrobacter gandavensis R 5812, R5812" Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter gandavensis "R 5812, R5812" 169960 CP118972.1 Bac0022115 Gordonia hongkongensis HKU50 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia hongkongensis HKU50 1701090 CP095552.1 Bac0022116 Aureimonas populi 4M3-2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas populi 4M3-2 1701758 CP072611.1 Bac0022117 Saccharolobus caldissimus HS-3 Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus caldissimus HS-3 1702097 AP025226.1 Bac0022118 "Cellulomonas fimi 133, NRS-133" Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas fimi "133, NRS-133" 1708 LR134387.1 Bac0022119 Natronomonas salina Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas salina 1710540 CP058335.1 Bac0022120 Mycoplasmopsis anatis Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis anatis 171279 CP030141.1 Bac0022121 "Mycoplasmopsis cynos H831(T), H-831" Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos "H831(T), H-831" 171284 LR214974.1 Bac0022122 Mesomycoplasma lagogenitalium 12MS Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma lagogenitalium 12MS 171286 CP122979.1 Bac0022123 Diaphorobacter ruginosibacter BN30 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Diaphorobacter Diaphorobacter ruginosibacter BN30 1715720 CP060714.1 Bac0022124 Methanosarcina flavescens E03.2 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina flavescens E03.2 1715806 CP032683.1 Bac0022125 Clostridium thermarum Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium thermarum 1716543 CP040924.1 Bac0022126 Sulfuriferula plumbiphila Gro7 Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sulfuricellaceae Sulfuriferula Sulfuriferula plumbiphila Gro7 171865 AP021884.1 Bac0022127 Mycobacterium vicinigordonae 24 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium vicinigordonae 24 1719132 CP059165.1 Bac0022128 Leptospira biflexa LEP1342 Pseudomonadati Spirochaetota Leptospiria Leptospirales Leptospiraceae Leptospira Leptospira biflexa LEP1342 172 CP000777.1 Bac0022129 "Rothia aeria A 1-17B, A1-17B" Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia aeria "A 1-17B, A1-17B" positive Rod aerobic air; oral cavity; oral environment; periodontal plaque biofilms; submucosal sulcus; upper digestive tract Non-pathogenic 172042 CP068102.1 Bac0022130 "Corynebacterium renale Charita a, Charita-a" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium renale "Charita a, Charita-a" 1724 LS483464.1 Bac0022131 Corynebacterium renale 5 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium renale 5 1724 LS483404.1 Bac0022132 Anaerocolumna chitinilytica CTTW Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Anaerocolumna chitinilytica CTTW 1727145 AP023368.1 Bac0022133 Cutibacterium acnes subsp. acnes Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes positive anaerobic 1734925 CP023676.1 Bac0022134 Serratia aquatilis 2015-2462-01 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia aquatilis 2015-2462-01 1737515 CP173186.1 Bac0022135 Niallia oryzisoli 1DS3-10 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Niallia Niallia oryzisoli 1DS3-10 1737571 CP137640.1 Bac0022136 Thermodesulfobacterium commune YSRA-1 Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium commune YSRA-1 1741 CP008796.1 Bac0022137 "Polynucleobacter antarcticus LimPoW16, MWH-LimPoW16" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter antarcticus "LimPoW16, MWH-LimPoW16" 1743162 CP028941.1 Bac0022138 Ancylobacter pratisalsi E130 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Ancylobacter Ancylobacter pratisalsi E130 1745854 CP048630.1 Bac0022139 Spongiibacter taiwanensis SPT1 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae Spongiibacter Spongiibacter taiwanensis SPT1 1748242 CP098455.1 Bac0022140 Lactobacillus ixorae Ru20-1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus ixorae Ru20-1 1750535 CP097478.1 Bac0022141 "Flavobacterium ammonificans SHINM13, Flavobacterium Strains: 1" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium ammonificans "SHINM13, Flavobacterium Strains: 1" 1751056 AP025185.1 Bac0022142 Flavobacterium ammoniigenes GENT5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium ammoniigenes GENT5 1751095 AP025184.1 Bac0022143 Corynebacterium faecale Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium faecale 1758466 CP047204.1 Bac0022144 Thalassotalea sediminis N211 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea sediminis N211 1759089 AP027361.1 Bac0022145 Thalassotalea crassostreae LPB0090 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea crassostreae LPB0090 1763536 CP017689.1 Bac0022146 Mycobacterium avium subsp. paratuberculosis JIII-386 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium JIII-386 gut 1770 CP042454.1 Bac0022147 Mycobacterium avium subsp. paratuberculosis 1351 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium 1351 gut 1770 CP053068.1 Bac0022148 Salinicola tamaricis F01 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Salinicola Salinicola tamaricis F01 1771309 CP023559.1 Bac0022149 Nocardioides rotundus GY0594 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides rotundus GY0594 1774216 CP082922.1 Bac0022150 Mycobacterium cookii NZ2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium cookii NZ2 1775 AP022569.1 Bac0022151 Polaribacter pacificus Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter pacificus 1775173 CP150664.1 Bac0022153 Paenibacillus psychroresistens Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus psychroresistens 1778678 CP034235.1 Bac0022154 Corynebacterium guangdongense S01 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium guangdongense S01 1783348 CP047654.1 Bac0022155 Pseudomonas glycinae MS586 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas glycinae MS586 1785145 CP014205.2 Bac0022156 Skermanella mucosa Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Skermanella Skermanella mucosa 1789672 CP086106.1 Bac0022157 Mycobacterium gadium 141280001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium gadium 141280001 1794 AP022608.1 Bac0022158 "Mycobacterium senegalense GA 924 (N169), M 263" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium senegalense "GA 924 (N169), M 263" 1796 CP081000.1 Bac0022159 Halococcus dombrowskii H4 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii H4 179637 CP095005.1 Bac0022160 "Mycobacterium thermoresistibile 14 131 0001, 316" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium thermoresistibile "14 131 0001, 316" 1797 LT906483.1 Bac0022161 Arcanobacterium wilhelmae 647 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium wilhelmae 647 1803177 CP121247.1 Bac0022162 Microcella flavibacter WY83 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microcella Microcella flavibacter WY83 1804990 CP051299.1 Bac0022163 Enterococcus saigonensis VE80 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus saigonensis VE80 1805431 AP022822.1 Bac0022164 Olsenella timonensis Bacillati Actinomycetota Coriobacteriia Coriobacteriales Atopobiaceae Olsenella Olsenella timonensis 1805478 LT635455.1 Bac0022165 Christensenella massiliensis Bacillati Bacillota Clostridia Christensenellales Christensenellaceae Christensenella Christensenella massiliensis 1805714 LT700187.1 Bac0022166 Echinicola rosea JL3085 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Echinicola Echinicola rosea JL3085 1807691 CP040106.1 Bac0022167 "Mycobacterium vaccae Schering 260, 14 120 0006" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium vaccae "Schering 260, 14 120 0006" Rod aquatic environments; drinking water; environment; environments; soil; soil/sediment 1810 CP011491.1 Bac0022168 Enterobacter hormaechei subsp. hoffmannii EN-114 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei EN-114 1812934 CP017186.1 Bac0022169 Sphingomonas naphthae DKC-5-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas naphthae DKC-5-1 1813468 CP117411.1 Bac0022170 Sphingomonas panacisoli HKS19 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacisoli HKS19 1813879 CP042306.1 Bac0022171 Streptococcus halotolerans HTS9 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus halotolerans HTS9 1814128 CP014835.1 Bac0022172 Haloplanus rallus MBLA0036 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus rallus MBLA0036 1816183 CP034345.1 Bac0022173 Skermanella rosea M1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Skermanella Skermanella rosea M1 1817965 CP086111.1 Bac0022174 "Myroides odoratus CL41/66, CL 41/66" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella mastomydis "CL41/66, CL 41/66" 1820002 CP068107.1 Bac0022175 Agarivorans albus Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Agarivorans Agarivorans albus 182262 AP023032.1 Bac0022176 "Nocardia asteroides 727, GA 875, M 170-6, M170-6" Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia asteroides "727, GA 875, M 170-6, M170-6" positive Rod 1824 LR134352.1 Bac0022177 Nocardia asteroides Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia asteroides positive Rod 1824 CP082844.1 Bac0022178 Vibrio japonicus Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio japonicus 1824638 CP102096.1 Bac0022179 Streptococcus marmotae HTS5 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus marmotae HTS5 1825069 CP015196.1 Bac0022180 Streptococcus constellatus subsp. constellatus 4055 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus constellatus 4055 184246 AP014647.1 Bac0022181 Arcobacter acticola AR-13 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter acticola AR-13 1849015 CP042652.1 Bac0022182 Dyella caseinilytica DHOB09 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Dyella Dyella caseinilytica DHOB09 1849581 CP064030.1 Bac0022183 Ezakiella massiliensis Bacillati Bacillota Tissierellia Ezakiella Ezakiella massiliensis vagina 1852374 LT635475.1 Bac0022184 Corynebacterium fournieri Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium fournieri vagina 1852390 CP047210.1 Bac0022185 Agromyces mangrovi HIr16-25 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces mangrovi (ex Wang et al. 2018) HIr16-25 1858653 AP027737.1 Bac0022186 "Frankia alni ACN14a, ULQ010201401" Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia alni "ACN14a, ULQ010201401" 1859 CT573213.2 Bac0022187 Hyphococcus flavus HSF6 Pseudomonadati Pseudomonadota Alphaproteobacteria Parvularculales Parvularculaceae Hyphococcus Hyphococcus flavus HSF6 1866326 CP118166.1 Bac0022188 "Actinoplanes teichomyceticus AB 8327, FH 2149" Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes teichomyceticus "AB 8327, FH 2149" 1867 CP023865.1 Bac0022189 Jeotgalibaca porci 1804-02 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca Jeotgalibaca porci 1804-02 1868793 CP049889.1 Bac0022190 Jeotgalibaca arthritidis 1805-02 Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca Jeotgalibaca arthritidis 1805-02 1868794 CP049740.1 Bac0022191 Paenibacillus ihbetae Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus ihbetae 1870820 CP016809.1 Bac0022192 Anaerococcus mediterraneensis Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus mediterraneensis vagina 1870984 LT635772.1 Bac0022193 Lachnoclostridium phocaeense Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium Lachnoclostridium phocaeense 1871021 LT635479.1 Bac0022194 Flavobacterium azooxidireducens IGB 4-14 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium azooxidireducens IGB 4-14 1871076 CP096205.1 Bac0022195 Caldithrix abyssi LF13 Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi LF13 187145 CP018099.1 Bac0022196 Corynebacterium glaucum Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glaucum 187491 CP047358.1 Bac0022197 Microvirga ossetica V5/3M Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga ossetica V5/3M 1882682 CP016616.1 Bac0022198 Streptomyces albogriseolus SD 524 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albogriseolus SD 524 1887 CP189902.1 Bac0022199 Streptococcus himalayensis HTS2 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus himalayensis HTS2 1888195 CP016953.1 Bac0022200 Polaribacter haliotis RA4-7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter haliotis RA4-7 1888915 CP061813.1 Bac0022201 Streptomyces ambofaciens T‚àö¬∫ 13 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces ambofaciens T‚àö¬∫ 13 1889 CP012949.1 Bac0022202 Cetobacterium somerae Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae 188913 CP173065.2 Bac0022203 Lactococcus garvieae subsp. garvieae YT-3 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus garvieae YT-3 1890280 AP009332.1 Bac0022204 Vibrio aphrogenes CA-1004 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio aphrogenes CA-1004 1891186 AP018689.1 Bac0022205 Thalassospira indica PB8B Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Thalassospiraceae Thalassospira Thalassospira indica PB8B 1891279 CP031555.1 Bac0022206 Roseobacter ponti MM-7 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseobacter Roseobacter ponti MM-7 1891787 CP048788.1 Bac0022207 Streptomyces clavuligerus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces clavuligerus 1901 CP027858.1 Bac0022208 Bradyrhizobium paxllaeri Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium paxllaeri 190148 CP042968.1 Bac0022209 Arcobacter lekithochrous Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter lekithochrous 1904463 CP054052.1 Bac0022210 Cutibacterium acnes subsp. defendens Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes 1905725 CP003084.1 Bac0022211 Tenacibaculum sp. AHE15PA Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum sp. AHE15PA 1906242 CP058982.1 Bac0022212 Tenacibaculum sp. AHE14PA Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Tenacibaculum Tenacibaculum sp. AHE14PA 1906242 CP058983.1 Bac0022213 Streptomyces glaucescens GLA O Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces glaucescens GLA O 1907 CP009438.1 Bac0022214 Lelliottia jeotgali PFL01 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Lelliottia Lelliottia jeotgali PFL01 1907578 CP018628.1 Bac0022215 Polaribacter litorisediminis OITF-11 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter litorisediminis OITF-11 1908341 CP082966.1 Bac0022216 "Vibrio gallicus HT2-1, HT 2-1" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gallicus "HT2-1, HT 2-1" 190897 AP024871.1 Bac0022217 Desulfobulbus oligotrophicus Prop6 Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oligotrophicus Prop6 1909699 CP054140.1 Bac0022218 Haloplanus salinarum SP28 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus salinarum SP28 1912324 CP101823.1 Bac0022219 Arcobacter canalis F138-33 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter canalis F138-33 1912871 CP042812.1 Bac0022220 Citrobacter europaeus 97/79 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter europaeus 97/79 1914243 CP083650.1 Bac0022221 Micromonospora terminaliae Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora terminaliae 1914461 CP045309.1 Bac0022222 Thioclava nitratireducens 25B10_4 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava nitratireducens 25B10_4 1915078 CP019437.1 Bac0022223 Corynebacterium atypicum R2070 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium atypicum R2070 191610 CP008944.1 Bac0022224 Dechloromonas sp. A34 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Azonexaceae Dechloromonas Dechloromonas sp. A34 1917218 CP102486.1 Bac0022225 Longibaculum sp. Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Longibaculum Longibaculum sp. 1918614 AP018537.1 Bac0022226 Vibrio spartinae SMJ21 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio spartinae SMJ21 1918945 AP024907.1 Bac0022227 Streptomyces nigrescens Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nigrescens 1920 CP114203.1 Bac0022228 Streptomyces libani subsp. libani 2343 FI = IPV Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nigrescens 2343 FI = IPV 1920 CP114202.1 Bac0022229 Polaribacter tangerinus WS2-14 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter tangerinus WS2-14 1920034 CP150668.1 Bac0022230 Polaribacter sp. R2A056_3_33 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. R2A056_3_33 1920175 CP058984.1 Bac0022231 "Polaribacter sp. AHE53.11, AHE13PA" Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. "AHE53.11, AHE13PA" 1920175 CP058985.1 Bac0022232 Polaribacter sp. HaHaR_3_91 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter sp. HaHaR_3_91 1920175 CP058986.1 Bac0022233 Acidovorax monticola K-4-16 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paenacidovorax Paenacidovorax monticola K-4-16 1926868 CP060790.1 Bac0022234 Flavobacterium ovatum W201E Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium ovatum W201E 1928857 CP160035.1 Bac0022235 Lysinimicrobium sediminis HT7-17 Bacillati Actinomycetota Actinomycetes Micrococcales Demequinaceae Demequina Demequina sediminis HT7-17 1930058 AP027736.1 Bac0022236 Halomonas alkalicola 56-L4-10aEn Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Halomonas Halomonas alkalicola 56-L4-10aEn 1930622 CP131913.1 Bac0022237 Bifidobacterium longum subsp. suillum Su 851 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum Su 851 1931217 CP070996.1 Bac0022238 Streptomyces janthinus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces violaceus 1936 CP134213.1 Bac0022239 Alysiella filiformis A1 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Alysiella Alysiella filiformis A1 194196 CP059564.1 Bac0022240 Streptomyces sporoverrucosus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces goshikiensis 1942 CP115936.1 Bac0022241 Rhodococcus sp. X156 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus uncultured Rhodococcus sp. X156 194249 CP034766.1 Bac0022242 Sulfurospirillum halorespirans PCE-M2 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum halorespirans PCE-M2 194424 CP017111.1 Bac0022243 Streptomyces rubrogriseus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces rubrogriseus 194673 CP116256.1 Bac0022244 Streptomyces vinaceus Jones 8542-1 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces vinaceus Jones 8542-1 1960 CP023692.1 Bac0022245 Streptomyces kanamyceticus K-2J Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces kanamyceticus K-2J 1967 CP023699.1 Bac0022246 Streptomyces chartreusis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces chartreusis 1969 CP023689.1 Bac0022247 Ciceribacter thiooxidans F43b Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ciceribacter Ciceribacter thiooxidans F43b 1969821 CP059896.1 Bac0022248 Kinneretia sp. DAIF2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Roseateles Roseateles sp. DAIF2 1971397 CP049919.1 Bac0022249 Cellulophaga sp. HaHaR_3_176 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga sp. HaHaR_3_176 1972202 CP058990.1 Bac0022250 Cellulophaga sp. HaHa_2_95 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga sp. HaHa_2_95 1972202 CP058988.1 Bac0022251 Cellulophaga sp. HaHa_2_1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga sp. HaHa_2_1 1972202 CP058989.1 Bac0022252 Altererythrobacter mangrovi C9-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Tsuneonella Tsuneonella mangrovi C9-11 1982042 CP022889.1 Bac0022253 Bacillus shivajii AK72 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus shivajii AK72 1983719 CP084703.1 Bac0022254 Vibrio pomeroyi Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio pomeroyi 198832 AP025506.1 Bac0022255 Campylobacter curvus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter curvus 200 CP053826.1 Bac0022256 Enterococcus wangshanyuanii MN05 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus wangshanyuanii MN05 2005703 CP021874.1 Bac0022257 Actinomyces wuliandei Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces wuliandei 2057743 CP025227.1 Bac0022258 Actinomyces qiguomingii 410 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces qiguomingii 410 2057800 CP025228.1 Bac0022260 Campylobacter sputorum subsp. sputorum S-17 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sputorum S-17 206 CP043427.1 Bac0022261 Campylobacter sputorum Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sputorum 206 CP019683.1 Bac0022262 Sphingomonas rhizophila THG-T61 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas rhizophila THG-T61 2071607 CP060717.1 Bac0022263 Vibrio gangliei SZDIS-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gangliei SZDIS-1 2077090 AP021869.1 Bac0022264 Bermanella marisrubri RED65 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Bermanella Bermanella marisrubri RED65 207949 CP051183.1 Bac0022265 Polynucleobacter corsicus AP-Melu-1000-A1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter corsicus AP-Melu-1000-A1 2081042 CP061314.1 Bac0022266 Adhaeribacter swui 17mud1-7 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Adhaeribacter Adhaeribacter swui 17mud1-7 2086471 CP055156.1 Bac0022267 Sphaerotilus sp. D-507 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Sphaerotilus Sphaerotilus sp. D-507 2093942 CP035708.1 Bac0022268 "Mycobacterium basiliense 2013500264, 901379" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium basiliense "2013500264, 901379" 2094119 LR130759.1 Bac0022269 Mesomycoplasma hyorhinis PG42 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis PG42 2100 LS991950.1 Bac0022270 "Vibrio echinoideorum NFH.MBO10, NFH.MB010" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio echinoideorum "NFH.MBO10, NFH.MB010" 2100116 AP025483.1 Bac0022271 "Mycoplasmoides pneumoniae M129, M129-B7" Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pneumoniae "M129, M129-B7" 2104 CP003913.1 Bac0022272 Mycoplasmoides pneumoniae FH Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pneumoniae FH 2104 Bac0022273 "Mycoplasma pneumoniae FH, FH strain of Eaton Agent" Bacillati Mycoplasmatota Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pneumoniae "FH, FH strain of Eaton Agent" 2104 CP010546.1 Bac0022274 "Mycoplasmopsis pulmonis Ash, L3, PG34" Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis pulmonis "Ash, L3, PG34" laboratory rodent colonies 2107 LR215008.1 Bac0022275 Mycoplasma sp. Zaradi2 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. Zaradi2 2108 CP070479.1 Bac0022276 "Metamycoplasma arthritidis Preston, PG6" Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma arthritidis "Preston, PG6" 2111 LR215047.1 Bac0022278 Mycoplasma putrefaciens KS1 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma putrefaciens KS1 2123 CP003021.1 Bac0022279 "Mycobacterium madagascariense 144040001, P2, 14 404 0001" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium madagascariense "144040001, P2, 14 404 0001" 212765 AP022610.1 Bac0022280 "Spiroplasma citri Maroc, Morocco-R8-A2" Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma citri "Maroc, Morocco-R8-A2" 2133 CP013197.1 Bac0022281 Bartonella kosoyi Tel Aviv Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella kosoyi Tel Aviv 2133959 CP031843.2 Bac0022282 Spiroplasma mirum SMCA Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma mirum SMCA 2144 CP002082.1 Bac0022283 Spiroplasma atrichopogonis GNAT3597 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma mirum GNAT3597 2144 CP011855.1 Bac0022284 "Acholeplasma laidlawii PG 8, PG8" Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii "PG 8, PG8" 2148 LS483439.1 Bac0022285 Subdoligranulum variabile BI-114 Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Subdoligranulum Subdoligranulum variabile BI-114 214851 CP102293.1 Bac0022286 Kordiimonas pumila N18 Pseudomonadati Pseudomonadota Alphaproteobacteria Kordiimonadales Kordiimonadaceae Kordiimonas Kordiimonas pumila N18 2161677 CP061205.1 Bac0022287 Mycobacterium psychrotolerans Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium psychrotolerans 216929 AP022574.1 Bac0022288 Spiroplasma chinense CCH Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma chinense CCH 216932 CP043026.1 Bac0022289 Helicobacter mustelae R85-136P Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter mustelae R85-136P 217 LS483446.1 Bac0022290 Stella vacuolata Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Allostellaceae Allostella Allostella vacuolata 217070 AP019702.1 Bac0022291 Clostridium carboxidivorans P7 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium carboxidivorans P7 pit mud 217159 CP011803.1 Bac0022292 Altererythrobacter rubellus KMU-45 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Altererythrobacter Altererythrobacter rubellus KMU-45 2173831 CP127221.1 Bac0022293 Halobaculum roseum D90 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum roseum D90 2175149 CP082286.1 Bac0022294 Thauera hydrothermalis GD-2 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Zoogloeaceae Pseudothauera Pseudothauera hydrothermalis GD-2 2184083 CP029331.1 Bac0022295 Methanothermococcus thermolithotrophicus SN-1 Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanothermococcus Methanothermococcus thermolithotrophicus SN-1 2186 OX296583.1 Bac0022296 Pedobacter schmidteae EG Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter schmidteae EG 2201271 LS999839.1 Bac0022297 Thermomonas aquatica SY21 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Thermomonas Thermomonas aquatica SY21 2202149 CP040871.1 Bac0022298 Zhouia spongiae HN-Y44 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zhouia Zhouia spongiae HN-Y44 2202721 CP094326.1 Bac0022299 Methanospirillum hungatei GP1 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum hungatei GP1 2203 CP077107.1 Bac0022300 Pectobacterium aquaticum A212-S19-A16 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium aquaticum A212-S19-A16 2204145 CP086253.1 Bac0022301 Paraliobacillus zengyii X-1125 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Paraliobacillus Paraliobacillus zengyii X-1125 2213194 CP029797.1 Bac0022302 Photorhabdus laumondii DJC Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Photorhabdus Photorhabdus laumondii DJC 2218628 CP024900.1 Bac0022303 Nonomuraea nitratireducens WYY166 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea phyllanthi WYY166 2219224 CP045572.1 Bac0022304 Cryobacterium soli GCJ02 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium soli GCJ02 2220095 CP030033.1 Bac0022305 Halobacterium noricense A1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium noricense A1 223182 CP089468.1 Bac0022306 Macrococcus caseolyticus subsp. caseolyticus LRA 041 575 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides caseolyticum LRA 041 575 2233644 CP065981.1 Bac0022307 Macrococcus caseolyticus subsp. caseolyticus 235 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcoides Macrococcoides caseolyticum 235 2233644 CP065729.1 Bac0022308 Skermanella pratensis W17 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Skermanella Skermanella pratensis W17 2233999 CP030265.1 Bac0022309 Staphylococcus succinus AMG-D1 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus succinus AMG-D1 224030 CP118976.1 Bac0022310 Halococcus qingdaonensis Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus qingdaonensis 224402 CP101943.1 Bac0022311 "Bradyrhizobium diazoefficiens 3I1B110, R-12974" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium diazoefficiens "3I1B110, R-12974" 224911 CP011360.1 Bac0022312 Halococcus morrhuae L.D. 3.1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus morrhuae L.D. 3.1 2250 CM125063.1 Bac0022313 "Erysipelothrix inopinata 02-143, MF-EP02" Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelothrix Erysipelothrix inopinata "02-143, MF-EP02" 225084 CP060715.1 Bac0022314 Sulfitobacter indolifex Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter indolifex 225422 CP084951.1 Bac0022315 Dickeya lacustris S29 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya lacustris S29 2259638 CP114280.1 Bac0022316 Pyrococcus furiosus Vc 1 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus Vc 1 100 hyperthermophilic 2261 CP023154.1 Bac0022317 Pyrococcus woesei Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus woesei 2262 CP179867.1 Bac0022318 "Bartonella krasnovii OE 1-1, OE1-1" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella krasnovii "OE 1-1, OE1-1" 2267275 CP031844.2 Bac0022319 Chitinophaga caseinilytica S-52 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga caseinilytica S-52 2267521 CP150096.1 Bac0022320 Lactobacillus terrae NIBRBAC000499792 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus terrae NIBRBAC000499792 2269374 CP024610.1 Bac0022321 "Corynebacterium ciconiae BIST 13, BS 13, BS13" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ciconiae "BIST 13, BS 13, BS13" 227319 CP047189.1 Bac0022322 Lactobacillus ultunensis Kx293C1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus ultunensis Kx293C1 227945 CP059829.1 Bac0022323 Novosphingobium humi R1-4 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium humi R1-4 2282397 CP117417.1 Bac0022324 Acidianus ambivalens Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus ambivalens 2283 CP045482.1 Bac0022325 Psychrobacillus glaciei PB01 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Psychrobacillus Psychrobacillus glaciei PB01 2283160 CP031223.1 Bac0022326 Saccharolobus shibatae B12 Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus shibatae B12 2286 CP077717.1 Bac0022327 Flavobacterium psychrotrophum CJ74 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrotrophum CJ74 2294119 CP031557.1 Bac0022328 "Scardovia wiggsiae C1A-55, C1A_55" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Scardovia Scardovia wiggsiae "C1A-55, C1A_55" 230143 CP157350.1 Bac0022329 Pseudodesulfovibrio portus Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio portus 231439 AP026708.1 Bac0022330 Corynebacterium diphtheriae subsp. lausannense CHUV2995 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae CHUV2995 2315254 LT990688.1 Bac0022331 "Rhodoluna limnophila CM 32925, 1B-Mac" Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila "CM 32925, 1B-Mac" 232537 CP040508.1 Bac0022332 Rhodoluna limnophila 27D-LEPI Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila 27D-LEPI 232537 CP040509.1 Bac0022333 Rhodoluna limnophila 36A-HellB Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila 36A-HellB 232537 CP040510.1 Bac0022334 "Alteromonas stellipolaris ANT69a, R-15466" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas stellipolaris "ANT69a, R-15466" Marine 233316 CP013926.1 Bac0022335 Alteromonas addita R10SW13 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas stellipolaris R10SW13 Marine 233316 CP014322.1 Bac0022336 Corynebacterium caspium M106/00/5 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium caspium M106/00/5 234828 CP047118.1 Bac0022337 Sporomusa paucivorans X Sporomusa paucivorans X 2376 CP155574.1 Bac0022338 Sporomusa termitida JSN-2 Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporomusa Sporomusa termitida JSN-2 2377 CP036259.1 Bac0022339 Streptococcus koreensis Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus koreensis 2382163 CP032620.1 Bac0022340 Shewanella donghaensis LT17 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella donghaensis LT17 238836 CP041783.1 Bac0022341 Teredinibacter turnerae T7902 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Teredinibacter Teredinibacter turnerae T7902 2426 CP149817.1 Bac0022342 Pseudomonas leptonychotis P5773 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas leptonychotis P5773 2448482 CP180477.1 Bac0022343 "Streptococcus mitis NS 51, SK142, SK 142, NS51" Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis "NS 51, SK142, SK 142, NS51" 246201 CP028414.1 Bac0022344 Serinicoccus marinus JC1078 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Serinicoccus Serinicoccus marinus JC1078 247333 CP043808.1 Bac0022345 Enterobacter oligotrophicus CCA6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter oligotrophicus CCA6 2478464 AP019007.1 Bac0022346 Vibrio zhugei HBUAS61001 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio zhugei HBUAS61001 2479546 CP033077.1 Bac0022347 Thermus caldilimi Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus caldilimi 2483360 CP038452.1 Bac0022348 Nocardioides pantholopis 603 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides pantholopis 603 2483798 CP033324.1 Bac0022349 Georgenia faecalis ZLJ0423 Bacillati Actinomycetota Actinomycetes Allobogoriellales Allobogoriellaceae Georgenia Georgenia faecalis ZLJ0423 2483799 CP033325.1 Bac0022350 "Erysipelothrix piscisicarius 15TAL0474, ATCC-TSD-175" Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelothrix Erysipelothrix piscisicarius "15TAL0474, ATCC-TSD-175" 2485784 CP034234.1 Bac0022351 "Bacillus cabrialesii CM-CNRG TB54, TE3" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus cabrialesii "CM-CNRG TB54, TE3" 2487276 CP096889.1 Bac0022352 "Corynebacterium urogenitale 820/3, LMM-1652" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium urogenitale "820/3, LMM-1652" 2487892 CP045032.1 Bac0022353 "Klebsiella africana 200023, SB5857" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella africana "200023, SB5857" 2489010 CP084874.1 Bac0022354 Zobellia laminariae Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Zobellia Zobellia laminariae 248906 CM127807.1 Bac0022355 Lactobacillus delbrueckii subsp. indicus Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii 249265 CP018614.1 Bac0022356 Pseudomonas hydrolytica DSWY01 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Ectopseudomonas Ectopseudomonas hydrolytica DSWY01 2493633 CP099397.1 Bac0022357 Roseovarius faecimaris MME-070 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Roseovarius Roseovarius faecimaris MME-070 2494550 CP034348.1 Bac0022358 Streptomyces platensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nigrescens 249582 AP023408.1 Bac0022359 Brevibacillus marinus Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus marinus 2496837 CP034541.1 Bac0022360 Billgrantia tianxiuensis BC-M4-5 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia tianxiuensis BC-M4-5 2497861 CP035042.1 Bac0022361 Rheinheimera mangrovi LHK132 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Chromatiaceae Rheinheimera Rheinheimera mangrovi LHK132 2498451 CP034683.1 Bac0022362 Aquiluna borgnonia 15G_AUS-rot Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aquiluna Aquiluna borgnonia 15G_AUS-rot 2499157 CP054056.1 Bac0022363 Nocardioides yefusunii HY056 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides yefusunii HY056 2500546 CP034929.1 Bac0022364 Apibacter raozihei Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Apibacter Apibacter raozihei 2500547 CP034930.1 Bac0022365 Salicibibacter halophilus Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salicibibacter Salicibibacter halophilus 2502791 CP035485.1 Bac0022366 Campylobacter armoricus CA656 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter armoricus CA656 2505970 CP053825.1 Bac0022367 Rhodoferax sediminis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax sediminis 2509614 CP035503.1 Bac0022368 Oceanispirochaeta crateris K2 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Oceanispirochaeta Oceanispirochaeta crateris K2 2518645 CP036150.1 Bac0022369 Rhodoferax aquaticus Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax aquaticus 2527691 CP036282.1 Bac0022370 Gimesia panareensis Pan110 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia panareensis Pan110 2527978 CP036277.1 Bac0022371 "Bremerella volcania Pan 97, Pan97" Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Bremerella Bremerella volcania "Pan 97, Pan97" 2527984 CP036289.1 Bac0022372 Planctopirus ephydatiae spb1 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctopirus Planctopirus ephydatiae spb1 2528019 CP036299.1 Bac0022373 Eikenella exigua PXX Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Eikenella Eikenella exigua PXX 2528037 CP038018.1 Bac0022374 Xanthobacter dioxanivorans YN2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Xanthobacter Xanthobacter dioxanivorans YN2 2528964 CP063362.1 Bac0022375 Microbacterium wangchenii Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium wangchenii 2541726 CP038266.1 Bac0022376 Aquicella siphonis SGT-108 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Coxiellaceae Aquicella Aquicella siphonis SGT-108 254247 LR699119.1 Bac0022377 Parashewanella tropica Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Parashewanella Parashewanella tropica 2547970 CP037951.1 Bac0022378 Nocardioides cynanchi SB3-45 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides cynanchi SB3-45 2558918 CP044344.1 Bac0022379 Actinomyces procaprae Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces procaprae 2560010 CP039292.1 Bac0022380 Vagococcus xieshaowenii Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus xieshaowenii 2562451 CP038865.1 Bac0022381 Luteimonas yindakuii Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas yindakuii 2565782 CP039383.2 Bac0022382 Thermosipho ferrireducens JL129W03 Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho ferrireducens JL129W03 2571116 CP071446.1 Bac0022383 Paraburkholderia acidiphila 7Q-K02 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia acidiphila 7Q-K02 2571747 CP046909.1 Bac0022384 Paraburkholderia acidisoli DHF22 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia acidisoli DHF22 2571748 CP046913.1 Bac0022385 Myroides fluvii Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides fluvii 2572594 CP039934.1 Bac0022386 Vibrio taketomensis C4III282 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio taketomensis C4III282 2572923 AP019649.1 Bac0022387 Vibrio taketomensis C4III291 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio taketomensis C4III291 2572923 AP019651.1 Bac0022388 "Sphingobacterium spiritivorum D7529, F8081" Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum "D7529, F8081" 258 CP068083.1 Bac0022389 "Sphingobacterium spiritivorum E7288, 29-83" Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium spiritivorum "E7288, 29-83" 258 CP068084.1 Bac0022390 Dialister hominis 5BBH33 Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister hominis 5BBH33 2582419 AP019697.1 Bac0022391 Saccharibacillus brassicae ATSA2 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Saccharibacillus Saccharibacillus brassicae ATSA2 2583377 CP041217.1 Bac0022392 Amedibacterium intestinale Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacterium Amedibacterium intestinale 2583452 AP019695.1 Bac0022393 Amedibacterium intestinale 9CBEGH2 Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacterium Amedibacterium intestinale 9CBEGH2 2583452 AP019711.1 Bac0022394 Alistipes onderdonkii subsp. vulgaris 3BBH6 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes onderdonkii 3BBH6 2585117 AP019734.1 Bac0022395 Alistipes onderdonkii subsp. vulgaris Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes onderdonkii 2585117 AP019737.1 Bac0022396 Alistipes communis 5CBH24 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes communis 5CBH24 2585118 AP019735.1 Bac0022397 Alistipes communis Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes communis 2585118 AP019739.1 Bac0022398 Alistipes dispar 5CPEGH6 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes dispar 5CPEGH6 2585119 AP019736.1 Bac0022399 Georgenia wutianyii Z294 Bacillati Actinomycetota Actinomycetes Allobogoriellales Allobogoriellaceae Georgenia Georgenia wutianyii Z294 2585135 CP040899.1 Bac0022400 Antarcticibacterium arcticum Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Antarcticibacterium Antarcticibacterium arcticum 2585771 CP042476.1 Bac0022401 Cellulosimicrobium protaetiae BI34 Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Cellulosimicrobium Cellulosimicrobium protaetiae BI34 2587808 CP052757.1 Bac0022402 Vibrio aquimaris THAF100 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio aquimaris THAF100 2587862 CP045350.1 Bac0022403 Shewanella polaris SM1901 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella polaris SM1901 2588449 CP041036.1 Bac0022404 Sulfurimonas xiamenensis 1-1N Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas xiamenensis 1-1N 2590021 CP041166.1 Bac0022405 Sulfurimonas lithotrophica GYSZ_1 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas lithotrophica GYSZ_1 2590022 CP043617.1 Bac0022406 Sulfurimonas marina B 2 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas marina B 2 2590551 CP041165.1 Bac0022407 Lysobacter alkalisoli SJ-36 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Marilutibacter Marilutibacter alkalisoli SJ-36 2591633 CP041242.1 Bac0022408 Echinicola soli LN3S3 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Echinicola Echinicola soli LN3S3 2591634 CP041253.1 Bac0022409 Lactococcus protaetiae 2DFWM-2 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus protaetiae 2DFWM-2 2592653 CP041356.1 Bac0022410 Acetobacter vaccinii C17-3 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter vaccinii C17-3 2592655 CP043506.1 Bac0022411 Ornithinimicrobium pratense W204 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium pratense W204 2593973 CP044427.1 Bac0022412 Formosa sediminum PS13 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Formosa Formosa sediminum PS13 2594004 CP041637.1 Bac0022413 Ornithinimicrobium ciconiae H23M54 Bacillati Actinomycetota Actinomycetes Micrococcales Ornithinimicrobiaceae Ornithinimicrobium Ornithinimicrobium ciconiae H23M54 2594265 CP041616.1 Bac0022414 Chitinimonas arctica Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Chitinimonas Chitinimonas arctica 2594795 CP041730.1 Bac0022415 Corynebacterium sanguinis Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sanguinis 2594913 CP038157.1 Bac0022416 Microlunatus elymi Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus elymi 2596828 CP041692.1 Bac0022417 Gordonia zhaorongruii HY186 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia zhaorongruii HY186 2597659 CP041763.1 Bac0022418 Comamonas flocculans NLF-7-7 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas flocculans NLF-7-7 2597701 CP042344.1 Bac0022419 Thermococcus aciditolerans SY113 Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus aciditolerans SY113 2598455 CP041932.1 Bac0022420 Humibacter ginsenosidimutans WJ7-1 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Humibacter Humibacter ginsenosidimutans WJ7-1 2599293 CP042305.1 Bac0022421 Sphingomonas suaedae Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas suaedae 2599297 CP042239.1 Bac0022422 Sneathiella aquimaris 216LB-ZA1-12 Pseudomonadati Pseudomonadota Alphaproteobacteria Sneathiellales Sneathiellaceae Sneathiella Sneathiella aquimaris 216LB-ZA1-12 2599305 CP112881.1 Bac0022423 Streptomyces qinzhouensis SSL-25 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces qinzhouensis SSL-25 2599401 CP042266.1 Bac0022424 Nitratireductor mangrovi SY7 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor mangrovi SY7 2599600 CP042301.2 Bac0022425 Halioglobus maricola IMCC14385 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Halieaceae Halioglobus Halioglobus maricola IMCC14385 2601894 CP036422.1 Bac0022426 Flavobacterium alkalisoli XS-5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium alkalisoli XS-5 2602769 CP042831.1 Bac0022427 Marinobacter fonticola CS412 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Marinobacteraceae Marinobacter Marinobacter fonticola CS412 2603215 CP043042.1 Bac0022428 Paraburkholderia dioscoreae Msb3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia dioscoreae Msb3 2604047 LR699553.1 Bac0022429 Pseudomonas lalkuanensis PE08 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Metapseudomonas Metapseudomonas lalkuanensis PE08 2604832 CP043311.1 Bac0022430 Chromobacterium paludis Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Chromobacterium Chromobacterium paludis 2605945 CP043473.1 Bac0022431 Campylobacter insulaenigrae Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter insulaenigrae 260714 LR134471.1 Bac0022432 Yersinia canariae SRR7544370T Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia canariae SRR7544370T 2607663 CP043727.1 Bac0022433 Cellulomonas palmilytica EW123 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas palmilytica EW123 2608402 CP062221.1 Bac0022434 Methylomonas rhizoryzae GJ1 Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylomonas Methylomonas rhizoryzae GJ1 2608981 CP043929.1 Bac0022435 "Halomonas piezotolerans NET06E8, NBT06E8" Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Vreelandella Vreelandella piezotolerans "NET06E8, NBT06E8" 2609667 CP048602.1 Bac0022436 Pseudopuniceibacterium antarcticum HQ09 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudooceanicola Pseudooceanicola spongiae HQ09 2613965 CP045201.1 Bac0022437 Microbacterium caowuchunii ST-M6 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium caowuchunii ST-M6 2614638 CP044231.1 Bac0022438 Microbacterium lushaniae L-031 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium lushaniae L-031 2614639 CP044232.1 Bac0022439 Nitrincola iocasae KXZD1103 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Nitrincola Nitrincola iocasae KXZD1103 2614693 CP044222.1 Bac0022440 Hymenobacter baengnokdamensis BRD72 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter baengnokdamensis BRD72 2615203 CP044285.1 Bac0022441 "Yersinia aleksiciae Y159, H254-36/86, Y 159" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia aleksiciae "Y159, H254-36/86, Y 159" 263819 CP011975.1 Bac0022442 Streptomyces phaeolivaceus GY16 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces phaeolivaceus GY16 2653200 CP045096.1 Bac0022443 Rubrobacter tropicus Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter tropicus 2653851 CP045119.1 Bac0022444 Rubrobacter marinus Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter marinus 2653852 CP045121.1 Bac0022445 "Citrobacter telavivensis 6105, 610S" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter telavivensis "6105, 610S" 2653932 CP045205.1 Bac0022446 Aeromicrobium yanjiei Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium yanjiei 2662028 CP045737.1 Bac0022447 Raineyella fluvialis CBA3103 Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Raineyella Raineyella fluvialis CBA3103 2662261 CP045725.1 Bac0022448 Vibrio algicola SM1977 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio algicola SM1977 2662262 CP045699.1 Bac0022449 Acinetobacter wanghuae Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter wanghuae 2662362 CP045650.1 Bac0022450 Streptomyces fagopyri Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces fagopyri 2662397 CP045643.1 Bac0022451 Gracilibacillus salitolerans SCU50 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Gracilibacillus Gracilibacillus salitolerans SCU50 2663022 CP045915.1 Bac0022452 Nocardioides marmotae zg-579 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides marmotae zg-579 2663857 CP053660.1 Bac0022453 Gordonia mangrovi HNM0687 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia mangrovi HNM0687 2665643 CP102850.1 Bac0022454 Qipengyuania seohaensis SW-135 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Qipengyuania Qipengyuania seohaensis SW-135 sediments; soil 266951 CP024920.1 Bac0022455 Neisseria bacilliformis Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria bacilliformis 267212 CP059571.1 Bac0022456 Microlunatus sp. Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus sp. Gsoil 973 2672569 CP046122.1 Bac0022457 Sulfurimonas aquatica H 1576 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas aquatica H 1576 2672570 CP046072.1 Bac0022458 Cohnella candidum Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella candida 2674991 CP033433.1 Bac0022459 Lysobacter caseinilyticus Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Noviluteimonas Noviluteimonas caseinilytica 2675101 AP024545.1 Bac0022460 Corynebacterium kalinowskii 1959 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium kalinowskii 1959 2675216 CP046452.1 Bac0022461 Corynebacterium comes 2019 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium comes 2019 2675218 CP046453.1 Bac0022462 Corynebacterium occultum 2039 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium occultum 2039 2675219 CP046455.1 Bac0022463 Sulfuriferula nivalis SGTM Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales Sulfuricellaceae Sulfuriferula Sulfuriferula nivalis SGTM 2675298 AP021881.1 Bac0022464 Acidithiobacillus ferrianus MG Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrianus MG 2678518 CP127523.1 Bac0022465 Methylococcus geothermalis Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylococcus Methylococcus geothermalis 2681310 CP046565.1 Bac0022466 Sphingomonas profundi Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Alterirhizorhabdus Alterirhizorhabdus profundi 2681549 CP046535.1 Bac0022467 Pseudomonas bijieensis L22-9 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas bijieensis L22-9 2681983 CP048810.1 Bac0022468 Mucilaginibacter ginkgonis HMF7856 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter ginkgonis HMF7856 2682091 CP066775.1 Bac0022469 Veillonella nakazawae Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella nakazawae 2682456 AP022321.1 Bac0022470 Corynebacterium anserum 23H37-10 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium anserum 23H37-10 2684406 CP046883.1 Bac0022471 Nocardioides ochotonae ZJ1313 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides ochotonae ZJ1313 2685869 CP061769.1 Bac0022472 Winogradskyella forsetii HL857 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella forsetii HL857 2686077 CP053348.1 Bac0022473 Winogradskyella schleiferi Z215 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella schleiferi Z215 2686078 CP053351.1 Bac0022474 Streptomyces broussonetiae Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces broussonetiae 2686304 CP047020.1 Bac0022475 Eggerthella guodeyinii HF-1101 Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Eggerthella guodeyinii HF-1101 2690837 CP063310.1 Bac0022476 Spirosoma aureum BT328 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma aureum BT328 2692134 CP050063.1 Bac0022477 Nitratiruptor tergarcus MI55-1 Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitratiruptor Nitratiruptor tergarcus MI55-1 269259 AP026671.1 Bac0022478 Pontibacter pudoricolor BT214 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Pontibacter Pontibacter pudoricolor BT214 2694930 CP048106.1 Bac0022479 Anaerocolumna sedimenticola CBA3638 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Anaerocolumna Anaerocolumna sedimenticola CBA3638 2696063 CP048000.1 Bac0022480 Aquirufa lenticrescens 9H-EGSE Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Aquirufa Aquirufa lenticrescens 9H-EGSE 2696560 CP049834.1 Bac0022481 Sodalis ligni dw23 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Bruguierivoracaceae Sodalis Sodalis ligni dw23 2697027 CP075169.1 Bac0022482 Aminipila terrae CBA3637 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Aminipila Aminipila terrae CBA3637 2697030 CP047591.1 Bac0022483 Xylophilus rhododendri CJ1-R5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Xylophilus Xylophilus rhododendri CJ1-R5 2697032 CP047650.1 Bac0022484 Brevibacterium atlanticum WO024 Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium atlanticum WO024 2697563 CP050152.1 Bac0022485 Pseudarthrobacter psychrotolerans Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Pseudarthrobacter Pseudarthrobacter psychrotolerans 2697569 CP047898.1 Bac0022486 Muricauda oceani Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas oceani 2698672 CP049616.1 Bac0022487 Novosphingobium decolorationis 502str22 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Novosphingobium Novosphingobium decolorationis 502str22 2698673 CP054856.1 Bac0022488 Sphingomonas changnyeongensis Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas changnyeongensis 2698679 CP047895.1 Bac0022489 Sphingomonas lacunae CSW-10 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas lacunae CSW-10 2698828 CP053015.1 Bac0022490 Trueperella sp. 15IMD0307 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Trueperella Trueperella sp. 15IMD0307 2699835 CP071974.1 Bac0022491 Paenibacillus lycopersici 12200R-189 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus lycopersici 12200R-189 2704462 CP048209.1 Bac0022492 Paenibacillus rhizovicinus 14171R-81 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus rhizovicinus 14171R-81 2704463 CP048286.1 Bac0022493 Nitrosophilus labii HRV44 Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitrosophilus Nitrosophilus labii HRV44 2706014 AP022826.1 Bac0022494 Adlercreutzia hattorii 8CFCBH1 Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Adlercreutzia hattorii 8CFCBH1 2707299 AP022829.2 Bac0022495 Legionella antarctica TUM19329 Pseudomonadati Pseudomonadota Gammaproteobacteria Legionellales Legionellaceae Legionella Legionella antarctica TUM19329 2708020 AP022839.1 Bac0022496 Microbacterium fandaimingii HY82 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Paramicrobacterium Paramicrobacterium fandaimingii HY82 2708079 CP061170.1 Bac0022497 Corynebacterium qintianiae Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium qintianiae 2709392 CP064955.1 Bac0022498 Streptomyces bathyalis ASO4wet Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces bathyalis ASO4wet 2710756 CP048882.1 Bac0022499 Rhizorhabdus phycosphaerae MK52 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Rhizorhabdaceae Rhizorhabdus Rhizorhabdus phycosphaerae MK52 2711156 CP049107.1 Bac0022500 Vibrio ziniensis ZWAL4003 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ziniensis ZWAL4003 2711221 CP049331.1 Bac0022501 Nocardioides anomalus HKS04 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides anomalus HKS04 2712223 CP049257.1 Bac0022502 Companilactobacillus pabuli NFFJ11 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Companilactobacillus Companilactobacillus pabuli NFFJ11 2714036 CP049366.1 Bac0022503 Leucobacter coleopterorum HDW9A Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter coleopterorum HDW9A 2714933 CP049933.1 Bac0022504 Leucobacter insecticola HDW9B Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter insecticola HDW9B 2714934 CP049934.1 Bac0022505 Leucobacter viscericola HDW9C Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter viscericola HDW9C 2714935 CP049863.1 Bac0022506 Brevilactibacter coleopterorum Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Propioniciclava Propioniciclava coleopterorum 2714937 CP049865.1 Bac0022507 Nocardioides piscis HDW12A Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides piscis HDW12A 2714938 CP049866.1 Bac0022508 Sphingomonas piscis HDW15B Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas piscis HDW15B 2714943 CP049869.1 Bac0022509 Sphingomonas sinipercae HDW15C Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sinipercae HDW15C 2714944 CP049871.1 Bac0022510 "Vagococcus coleopterorum also known as KACC 21344, or JCM 33682, HDW17A" Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus coleopterorum "also known as KACC 21344, or JCM 33682, HDW17A" 2714946 CP049886.1 Bac0022511 "Vagococcus hydrophili or JCM 33683, also known as KACC 21345, HDW17B" Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus hydrophili "or JCM 33683, also known as KACC 21345, HDW17B" 2714947 CP049887.1 Bac0022512 Weissella coleopterorum Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella coleopterorum 2714949 CP049888.1 Bac0022513 Acinetobacter lanii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter lanii 2715163 CP049916.1 Bac0022514 Acinetobacter shaoyimingii Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter shaoyimingii 2715164 CP049801.1 Bac0022515 Streptomyces liangshanensis QMT-12 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces liangshanensis QMT-12 2717324 CP050177.1 Bac0022516 Corynebacterium rouxii FRC0190 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium rouxii FRC0190 2719119 LR738855.1 Bac0022517 Actinoplanes sp. B-133 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes sp. NBRC 14428 B-133 2721544 AP023357.1 Bac0022518 Arcanobacterium buesumense 2701 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Arcanobacterium Arcanobacterium buesumense 2701 2722751 CP050804.1 Bac0022519 Actinomyces faecalis ZJ34 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces faecalis ZJ34 2722820 CP063418.1 Bac0022520 Ferrimonas lipolytica Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Ferrimonadaceae Ferrimonas Ferrimonas lipolytica 2724191 CP051180.1 Bac0022521 Hymenobacter russus BT18 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter russus BT18 2724192 CP050954.1 Bac0022522 Chitinophaga oryzae 1303 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga oryzae 1303 2725414 CP051204.2 Bac0022523 Pseudomonas tohonis TUM18999 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tohonis TUM18999 2725477 AP023189.1 Bac0022524 Mycoplasma phocoeninasale C264-NAS Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma phocoeninasale C264-NAS 2726117 CP051480.1 Bac0022525 Marinomonas profundi M1K-6 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas profundi M1K-6 2726122 CP073013.1 Bac0022526 Massilia forsythiae GN2-R2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia forsythiae GN2-R2 2728020 CP051685.1 Bac0022527 Duganella dendranthematis AF9R3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella dendranthematis AF9R3 2728021 CP051684.1 Bac0022528 Mucilaginibacter robiniae F39-2 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter robiniae F39-2 2728022 CP051682.1 Bac0022529 Cohnella herbarum MFER-1 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Cohnella Cohnella herbarum MFER-1 2728023 CP051680.1 Bac0022530 Spirosoma rhododendri CJU-R4 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma rhododendri CJU-R4 2728024 CP051677.1 Bac0022531 Sediminibacillus dalangtanensis DP4-553-S Bacillati Bacillota Bacilli Caryophanales Bacillaceae Sediminibacillus Sediminibacillus dalangtanensis DP4-553-S 2729421 CP046956.1 Bac0022532 Methanobacterium alkalithermotolerans CAN Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium alkalithermotolerans CAN 2731220 CP058560.1 Bac0022533 Mycoplasma amphoriforme A39 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma amphoriforme A39 273136 HG937516.1 Bac0022534 "Pseudomonas campi S1-A32-2, 31521" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Aquipseudomonas Aquipseudomonas campi "S1-A32-2, 31521" 2731681 CP053697.2 Bac0022535 Teredinibacter haidensis Bs08 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Cellvibrionaceae Teredinibacter Teredinibacter haidensis Bs08 2731755 CP060084.1 Bac0022536 Paraburkholderia sabiae Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia Paraburkholderia sabiae 273251 CP125295.1 Bac0022537 Billgrantia sulfidoxydans CYN-1-2 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia sulfidoxydans CYN-1-2 2733484 CP053381.1 Bac0022538 Trueperella sp. 19M2397 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Trueperella Trueperella pecoris 19M2397 2733571 CP053291.1 Bac0022539 Sphaerochaeta coccoides SPN1 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Parasphaerochaeta Parasphaerochaeta coccoides SPN1 273376 CP002659.1 Bac0022540 Corynebacterium wankanglinii zg-913 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium wankanglinii zg-913 2735136 CP061031.1 Bac0022541 Agrobacterium vaccinii B7.6 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium vaccinii B7.6 2735528 CP054150.1 Bac0022542 "Thiothrix subterranea UQM 41459, Ku-5" Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Thiothrix Thiothrix subterranea "UQM 41459, Ku-5" 2735563 CP053482.1 Bac0022543 Spirosoma taeanense TS118 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma taeanense TS118 2735870 CP053435.1 Bac0022544 Brucella sp. 141012304 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Brucellaceae Brucella Brucella sp. DSM 103976 141012304 2735893 LT605585.1 Bac0022545 Pseudonocardia broussonetiae Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia broussonetiae 2736640 CP053564.1 Bac0022546 Mycolicibacterium mengxianglii Z-34 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium mengxianglii Z-34 2736649 CP065373.2 Bac0022547 Nocardioides campestrisoli MC1495 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides campestrisoli MC1495 2736757 CP061768.1 Bac0022548 Actinomyces marmotae Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces marmotae 2737173 CP053642.1 Bac0022549 Polaribacter pectinis L12M9 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter pectinis L12M9 2738844 CP060695.1 Bac0022550 Halorubrum salinarum RHB-C Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum salinarum RHB-C 2739057 CP053941.1 Bac0022551 Pedobacter foliorum R-74623 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter foliorum R-74623 2739058 CP162529.1 Bac0022552 Erythrobacter mangrovi EB310 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Erythrobacter Erythrobacter mangrovi EB310 2739433 CP053921.1 Bac0022553 Mucilaginibacter mali G2-14 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter mali G2-14 2740462 CP054139.1 Bac0022554 Hydrogenimonas urashimensis SSM-sur55 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Hydrogenimonadaceae Hydrogenimonas Hydrogenimonas urashimensis SSM-sur55 2740515 AP023212.1 Bac0022555 Salicibibacter cibarius NKC5-3 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salicibibacter Salicibibacter cibarius NKC5-3 2743000 CP054705.1 Bac0022556 Salicibibacter cibi NKC21-4 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Salicibibacter Salicibibacter cibi NKC21-4 2743001 CP054706.1 Bac0022557 Halobaculum salinum NJ-3-1 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorarum Halorarum salinum NJ-3-1 2743089 CP058579.1 Bac0022558 Halobaculum halophilum Gai3-2 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorarum Halorarum halophilum Gai3-2 2743090 CP058529.1 Bac0022559 Acidovorax antarcticus 16-35-5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas antarctica 16-35-5 2743470 CP054840.1 Bac0022560 Actinomyces respiraculi ZJ750 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces respiraculi ZJ750 2744574 CP063989.1 Bac0022561 Adhaeribacter radiodurans KUDC8001 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Adhaeribacter Adhaeribacter radiodurans KUDC8001 2745197 CP055153.1 Bac0022562 Pseudomonas vanderleydeniana RW8P3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas vanderleydeniana RW8P3 2745495 CP077093.1 Bac0022563 Pseudomonas iranensis SWRI54 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas iranensis SWRI54 2745503 CP077092.1 Bac0022564 Pseudomonas hamedanensis SWRI65 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas hamedanensis SWRI65 2745504 CP077091.1 Bac0022565 Pseudomonas monsensis PGSB 8459 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas monsensis PGSB 8459 2745509 CP077087.1 Bac0022566 Pseudomonas zeae OE 48.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas zeae OE 48.2 2745510 CP077090.1 Bac0022567 Pseudomonas tensinigenes ZA 5.3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tensinigenes ZA 5.3 2745511 CP077089.1 Bac0022568 Pseudomonas shahriarae SWRI52 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas shahriarae SWRI52 2745512 CP077085.1 Bac0022569 Pseudomonas salmasensis SWRI126 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas salmasensis SWRI126 2745514 CP077083.1 Bac0022570 Pseudomonas tritici SWRI145 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas tritici SWRI145 2745518 CP077084.1 Bac0022571 Dyadobacter sandarakinus Q3-56 Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Dyadobacter Dyadobacter sandarakinus Q3-56 2747268 CP056775.1 Bac0022572 Enterobacter sp. WS 20255 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter sp. DSM 30060 WS 20255 2747372 CP056118.1 Bac0022573 Natronomonas halophila Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas halophila 2747817 CP058334.1 Bac0022574 Bradyrhizobium quebecense 66S1MB Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium quebecense 66S1MB 2748629 CP088022.1 Bac0022575 Staphylococcus taiwanensis NTUH-S172 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus taiwanensis NTUH-S172 2750012 CP058667.1 Bac0022576 Chryseoglobus indicus Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microcella Microcella indica 2750620 CP058670.1 Bac0022577 "Actinomadura graeca NCTC 14609 in the relevant culture collection, 32-07, designated DSM 111581" Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura graeca "NCTC 14609 in the relevant culture collection, 32-07, designated DSM 111581" 2750812 CP059572.1 Bac0022578 Coprobacter secundus subsp. similis 2CBH44 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Barnesiellaceae Coprobacter Coprobacter secundus 2CBH44 2751153 AP023322.1 Bac0022579 Nocardia huaxiensis WCH-YHL-001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia huaxiensis WCH-YHL-001 2755382 CP059399.1 Bac0022580 Actinomyces capricornis MAS-¬¨‚â†1 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces capricornis MAS-¬¨‚â†1 2755559 AP025017.1 Bac0022581 Brochothrix thermosphacta SW 26 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Brochothrix Brochothrix thermosphacta SW 26 2756 CP145608.1 Bac0022582 "Brochothrix campestris S3, S3" Bacillati Bacillota Bacilli Caryophanales Listeriaceae Brochothrix Brochothrix campestris "S3, S3" 2757 CP175511.1 Bac0022583 Aureimonas mangrovi 36984 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Aurantimonadaceae Aureimonas Aureimonas mangrovi 36984 2758041 CP059692.1 Bac0022584 Gordonia jinghuaiqii zg-686 Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia jinghuaiqii zg-686 2758710 CP059491.1 Bac0022585 Sphingomonas aliaeris DH-S5 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas aliaeris DH-S5 2759526 CP061035.1 Bac0022586 Chryseobacterium capnotolerans DH-B6 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium capnotolerans DH-B6 2759528 CP065589.1 Bac0022587 Nocardioides dongkuii S-713 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides dongkuii S-713 2760089 CP059903.1 Bac0022588 "Borrelia maritima CA690, TSD-160" Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella [Borrelia] maritima "CA690, TSD-160" 2761123 CP044535.1 Bac0022589 Mycolicibacterium baixiangningiae LJ126 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium baixiangningiae LJ126 2761578 CP066218.1 Bac0022590 Rickettsia tillamookensis Tillamook 23 Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia tillamookensis Tillamook 23 2761623 CP060138.2 Bac0022591 Brevibacterium profundi Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium profundi 2761954 CP051626.1 Bac0022592 Sphingomonas albertensis 23L3C Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas albertensis 23L3C 2762591 CP162536.1 Bac0022593 Streptomyces buecherae AC541 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces buecherae AC541 2763006 CP060404.1 Bac0022594 Corynebacterium lujinxingii zg-917 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium lujinxingii zg-917 2763010 CP061032.1 Bac0022595 Actinomyces trachealis zg-993 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces trachealis zg-993 2763540 CP065027.1 Bac0022596 Massilia antarctica P8398 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Massilia Massilia antarctica P8398 2765360 CP065053.1 Bac0022597 Pedobacter riviphilus SW-16 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter riviphilus SW-16 2766984 CP061171.1 Bac0022598 Streptomyces genisteinicus CRPJ-33 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces genisteinicus CRPJ-33 2768068 CP060825.1 Bac0022599 Corynebacterium zhongnanshanii zg-320 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium zhongnanshanii zg-320 2768834 CP061033.1 Bac0022600 Microbacterium chengjingii HY60 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Paramicrobacterium Paramicrobacterium chengjingii HY60 2769067 CP061169.1 Bac0022601 Roseococcus microcysteis NIBR12 Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Roseococcus Roseococcus microcysteis NIBR12 2771361 CP061718.1 Bac0022602 Marinomonas algicola SM1966 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas algicola SM1966 2773454 CP061941.1 Bac0022603 Brevundimonas pondensis LVF1 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas pondensis LVF1 2774189 CP062006.1 Bac0022604 Brevundimonas goettingensis LVF2 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas goettingensis LVF2 2774190 CP062222.1 Bac0022605 Pseudomonas allokribbensis I zPS23 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas allokribbensis I zPS23 2774460 CP062252.1 Bac0022606 Pseudomonas gozinkensis IzPS32d Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas gozinkensis IzPS32d 2774461 CP062253.1 Bac0022607 Xanthomonas hydrangeae GBBC 2123 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas hydrangeae GBBC 2123 2775159 LR990730.1 Bac0022608 Mesorhizobium onobrychidis OM4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium Mesorhizobium onobrychidis OM4 2775404 CP062229.1 Bac0022609 "Rodentibacter haemolyticus 1625_19, 1625/19" Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Rodentibacter Rodentibacter haemolyticus "1625_19, 1625/19" 2778911 CP063056.1 Bac0022610 "Blautia liquoris CGMCC T 1.5299, LZLJ-3" Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia liquoris "CGMCC T 1.5299, LZLJ-3" 2779518 CP063304.1 Bac0022611 Sulfurovum indicum ST-419 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum indicum ST-419 2779528 CP063164.1 Bac0022612 Luteibacter flocculans EIF3 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Luteibacter Luteibacter flocculans EIF3 2780091 CP063231.1 Bac0022613 Lysobacter ciconiae H21R20 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Novilysobacter Novilysobacter ciconiae H21R20 2781022 CP063656.1 Bac0022614 Lysobacter avium H23M41 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Novilysobacter Novilysobacter avium H23M41 2781023 CP063657.1 Bac0022615 Staphylococcus lloydii 23_2_7_LY Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus lloydii 23_2_7_LY 2781774 CP064056.1 Bac0022616 Halomonas diversa D167-6-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia diversa D167-6-1 2781855 CP053382.1 Bac0022617 "Agromyces archimandritae G127ATT, G127AT" Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces archimandritae "G127ATT, G127AT" 2781962 CP071696.1 Bac0022618 Microbacterium luteum A18JL200 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium luteum A18JL200 2782167 CP063814.1 Bac0022619 Microbacterium atlanticum WY121 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium atlanticum WY121 2782168 CP063813.1 Bac0022620 Microbacterium cremeum NY27 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium cremeum NY27 2782169 CP063812.1 Bac0022621 Azospira inquinata Azo-3 Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Azospira Azospira inquinata Azo-3 2785627 CP064782.1 Bac0022622 Treponema peruense Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema peruense 2787628 CP064936.1 Bac0022623 "Vibrio neonatus HDD 3-1, HDD3-1" Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio neonatus "HDD 3-1, HDD3-1" 278860 AP024885.1 Bac0022624 Pedobacter endophyticus JBR3-12 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter endophyticus JBR3-12 2789740 CP064939.1 Bac0022625 Pontivivens ytuae MT2928 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pontivivens Pontivivens ytuae MT2928 2789856 CP064942.1 Bac0022626 Pseudonocardia abyssalis KRD168 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia abyssalis KRD168 2792008 JADQDK010000001.1 Bac0022627 Comamonas fluminis CJ34 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas fluminis CJ34 2796366 CP066783.1 Bac0022628 Brevibacillus composti FJAT-54423 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Brevibacillus Brevibacillus composti FJAT-54423 2796470 CP066308.1 Bac0022629 Enterobacter dykesii E1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter dykesii E1 2797506 CP126604.1 Bac0022630 Streptomyces liliifuscus ZYC-3 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces liliifuscus ZYC-3 2797636 CP066831.1 Bac0022631 Rhodoferax lithotrophicus MIZ03 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Rhodoferax Rhodoferax lithotrophicus MIZ03 2798804 AP024238.1 Bac0022632 Streptomyces sp. FH 1360 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DSM 40750 FH 1360 2801030 CP102513.1 Bac0022633 Prevotella herbatica WR041 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella herbatica WR041 2801997 AP024484.1 Bac0022634 Aequorivita iocasae KX20305 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita iocasae KX20305 2803865 CP068439.1 Bac0022635 Caldicellulosiruptor diazotrophicus YA01 Bacillati Bacillota Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Anaerocellum diazotrophicum YA01 2806205 AP024480.1 Bac0022636 Parasphingorhabdus cellanae JHSY0214 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Parasphingorhabdus Parasphingorhabdus cellanae JHSY0214 2806553 CP071794.1 Bac0022637 Polaribacter batillariae G4M1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter batillariae G4M1 2808900 CP071795.1 Bac0022638 Paenibacillus tianjinensis TB2019 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus tianjinensis TB2019 2810347 CP070969.1 Bac0022639 Fulvivirga lutea S481 Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Fulvivirga Fulvivirga lutea S481 2810512 CP070608.1 Bac0022640 Pseudodesulfovibrio sediminis SF6 Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio sediminis SF6 2810563 AP024485.1 Bac0022641 "Rhodococcus pseudokoreensis R 79, R79" Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus pseudokoreensis "R 79, R79" 2811421 CP070619.1 Bac0022642 Porphyromonas endodontalis HG370 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas endodontalis HG370 28124 CP083629.1 Bac0022643 Paracoccus methylovorus H4-D09 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus methylovorus H4-D09 2812658 CP070368.1 Bac0022644 Arthrobacter polaris C1-1 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter polaris C1-1 2813727 CP071516.2 Bac0022646 Shewanella cyperi FJAT-53720 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella cyperi FJAT-53720 2814292 CP071501.1 Bac0022647 Shewanella sedimentimangrovi FJAT 52962 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella sedimentimangrovi FJAT 52962 2814293 CP071502.1 Bac0022648 Shewanella avicenniae FJAT 51800 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella avicenniae FJAT 51800 2814294 CP071503.1 Bac0022649 Geobacter benzoatilyticus Jerry-YX Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter benzoatilyticus Jerry-YX 2815309 CP071382.1 Bac0022650 Alkalibacter rhizosphaerae ES005 Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Alkalibacter Alkalibacter rhizosphaerae ES005 2815577 CP071444.1 Bac0022651 Haloterrigena alkaliphila KZCA68 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Haloterrigena Haloterrigena alkaliphila KZCA68 2816475 CP071462.1 Bac0022652 Arthrobacter sunyaminii zg-ZUI122 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sunyaminii zg-ZUI122 2816859 CP076456.1 Bac0022653 Ottowia testudinis 27C Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Ottowia Ottowia testudinis 27C 2816950 CP071796.1 Bac0022654 Cellulomonas wangleii zg-ZUI222 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas wangleii zg-ZUI222 2816956 CP074405.1 Bac0022655 Arthrobacter jiangjiafuii zg-ZUI227 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter jiangjiafuii zg-ZUI227 2817475 CP076022.1 Bac0022656 Polaribacter cellanae SM13 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter cellanae SM13 2818493 CP071869.1 Bac0022657 Pengzhenrongella sicca LRZ-2 Bacillati Actinomycetota Actinomycetes Micrococcales Pengzhenrongella Pengzhenrongella sicca LRZ-2 2819238 CP071868.1 Bac0022658 Bradyrhizobium barranii subsp. apii 38S5 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium barranii 38S5 2819348 CP096251.1 Bac0022659 Streptococcus toyakuensis TP1632 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus toyakuensis TP1632 2819619 AP024523.1 Bac0022660 Cellulomonas fengjieae zg-ZUI188 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas fengjieae zg-ZUI188 2819978 CP074404.1 Bac0022661 Cellulomonas dongxiuzhuiae zg-ZUI157 Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas dongxiuzhuiae zg-ZUI157 2819979 CP076023.1 Bac0022662 Methanococcoides orientis LMO-1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides orientis LMO-1 2822137 CP073710.1 Bac0022663 Lysobacter luteus AS29M Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Novilysobacter Novilysobacter luteus AS29M 2822368 OU015430.1 Bac0022664 Cobetia marina Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Cobetia Cobetia marina 28258 CP017114.1 Bac0022665 Gordonia pseudamarae Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia pseudamarae 2831662 CP045809.1 Bac0022666 Pseudomonas fitomaticsae FIT81 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fitomaticsae FIT81 2837969 CP075567.1 Bac0022667 Streptomyces lienomycini Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lienomycini 284035 CP116257.1 Bac0022668 Halapricum desulfuricans HSR12-¬¨‚â†2 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halapricum Halapricum desulfuricans HSR12-¬¨‚â†2 2841257 CP064788.1 Bac0022669 Vibrio ostreae OG9-811 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio ostreae OG9-811 2841925 CP076643.1 Bac0022670 Pseudomonas alvandae SWRI17 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas alvandae SWRI17 2842348 CP077080.1 Bac0022671 Pseudomonas asgharzadehiana SWRI132 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas asgharzadehiana SWRI132 2842349 CP077079.1 Bac0022672 Pseudomonas azerbaijanorientalis SWRI123 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas azerbaijanorientalis SWRI123 2842350 CP077078.1 Bac0022673 Pseudomonas maumuensis COW77 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas maumuensis COW77 2842354 CP077077.1 Bac0022674 Pseudomonas fakonensis COW40 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fakonensis COW40 2842355 CP077076.1 Bac0022675 Pseudomonas xanthosomatis COR54 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas xanthosomatis COR54 2842356 CP077075.1 Bac0022676 Pseudomonas muyukensis COW39 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas muyukensis COW39 2842357 CP077073.1 Bac0022677 Amycolatopsis aidingensis Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis aidingensis 2842453 CP076538.1 Bac0022678 Ralstonia wenshanensis 56D2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia wenshanensis 56D2 2842456 CP076413.1 Bac0022679 Halomonas sulfidivorans NLG_F1E Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Billgrantia Billgrantia antri NLG_F1E 2846777 CP053383.1 Bac0022680 Atribacter laminatus RT761 Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Atribacter laminatus RT761 2847778 CP065383.1 Bac0022681 Geomonas oryzisoli RG10 Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas oryzisoli RG10 2847992 CP076723.1 Bac0022682 Nocardioides panacis G188 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides panacis G188 2849501 CP077062.1 Bac0022683 Niabella defluvii I65 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Paraniabella Paraniabella defluvii I65 2855689 CP079215.1 Bac0022684 Streptomyces angustmyceticus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces angustmyceticus 285578 CP082945.1 Bac0022685 Flavobacterium litorale WSW3-B6 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium litorale WSW3-B6 2856519 CP080429.1 Bac0022686 Mycetocola spongiae MSC19 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Mycetocola Mycetocola spongiae MSC19 2859226 CP080203.1 Bac0022687 Devosia salina SCS-3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia salina SCS-3 2860336 CP080590.1 Bac0022688 Lysobacter terrestris II4 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Agrilutibacter Agrilutibacter terrestris II4 2865112 CP060820.1 Bac0022689 Pseudonocardia sp. Q2 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. DSM 110487 Q2 2865833 CP080521.1 Bac0022690 Arachidicoccus terrestris 5GH13-10 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Arachidicoccus Arachidicoccus terrestris 5GH13-10 2875539 CP083387.1 Bac0022691 Streptomyces gobiensis 1_25 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces gobiensis 1_25 2875706 CP086120.1 Bac0022692 Macrococcus armenti JEK37 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus armenti JEK37 2875764 CP083608.1 Bac0022693 Macrococcus armenti W.O.292 / B-P 25 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Macrococcus Macrococcus armenti W.O.292 / B-P 25 2875764 CP094348.1 Bac0022694 Haloprofundus halobius SEDH52 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus halobius SEDH52 2876194 CP083666.1 Bac0022695 Streptomyces marincola SCSIO 64649 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces marincola SCSIO 64649 2878388 CP084541.1 Bac0022696 Halomicrobium salinisoli LT50 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium salinisoli LT50 2878391 CP084463.1 Bac0022697 Natrinema salinisoli SLN56 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema salinisoli SLN56 2878535 CP084469.1 Bac0022698 Arsenophonus apicola ArsBeeUS Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Arsenophonus Arsenophonus apicola ArsBeeUS 2879119 CP084222.1 Bac0022699 Pseudosulfitobacter sp. PIC-76 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Pseudosulfitobacter Pseudosulfitobacter sp. DSM 107133 PIC-76 2883100 CP085154.1 Bac0022700 Sulfitobacter sp. 2RS2_G6 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Roseobacteraceae Sulfitobacter Sulfitobacter sp. DSM 110093 2RS2_G6 2883127 CP085167.1 Bac0022701 "Corynebacterium uberis 18M0132, CP085051.1" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium uberis "18M0132, CP085051.1" 2883169 CP085051.1 Bac0022702 Lentilactobacillus laojiaonis IM3328 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lentilactobacillus Lentilactobacillus laojiaonis IM3328 2883998 CP085278.1 Bac0022703 Haladaptatus halobius PSR5 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus halobius PSR5 2884875 CP085335.1 Bac0022704 Haladaptatus salinisoli PSR8 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus salinisoli PSR8 2884876 CP085327.1 Bac0022705 Streptomyces nitrosporeus 0-20 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nitrosporeus 0-20 28894 CP023702.1 Bac0022706 Sphingomonas radiodurans S9-5 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas radiodurans S9-5 2890321 CP086594.1 Bac0022707 Thiothrix litoralis AS Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Thiotrichaceae Thiothrix Thiothrix litoralis AS 2891210 CP072801.1 Bac0022708 Pseudocitrobacter corydidari G163CM Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Pseudocitrobacter Pseudocitrobacter corydidari G163CM 2891570 CP087880.1 Bac0022709 Staphylococcus ratti NRL/St 03/464 Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus ratti NRL/St 03/464 2892440 CP086654.1 Bac0022710 Pedobacter mucosus Q8-18 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter mucosus Q8-18 2895286 CP087585.1 Bac0022711 Faecalibacter bovis ZY171143 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Faecalibacter Faecalibacter bovis ZY171143 2898187 CP072842.1 Bac0022712 Frateuria edaphi 5GH9-34 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Rhodanobacteraceae Frateuria Frateuria edaphi 5GH9-34 2898793 CP088251.1 Bac0022713 Spirosoma oryzicola RHs26 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma oryzicola RHs26 2898794 CP089538.1 Bac0022714 Sphingomonas cannabina DM2-R-LB4 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas cannabina DM2-R-LB4 2899123 CP090059.1 Bac0022715 Pseudomonas carboxydohydrogena Z-1062 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Afipia Afipia carboxydohydrogena Z-1062 290 CP113162.1 Bac0022716 Sinomicrobium kalidii HD2P242 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Sinomicrobium Sinomicrobium kalidii HD2P242 2900738 CP089211.1 Bac0022717 Paracoccus everestensis S8-55 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus everestensis S8-55 2903900 CP090836.1 Bac0022718 Moraxella nasovis ZY201115 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella nasovis ZY201115 2904121 CP089976.1 Bac0022719 Solibacillus daqui ZS111008 Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Solibacillus Solibacillus daqui ZS111008 2912187 CP114887.1 Bac0022720 Bacteroides nordii Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides nordii 291645 CP082886.1 Bac0022721 Anaeromyxobacter oryzae Red232 Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter oryzae Red232 2918170 AP025591.1 Bac0022722 Anaeromyxobacter paludicola Red630 Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter paludicola Red630 2918171 AP025592.1 Bac0022723 Providencia manganoxydans LLDRA6 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia manganoxydans LLDRA6 2923283 CP067099.1 Bac0022724 Bombilactobacillus folatiphilus SG4_D2 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bombilactobacillus Bombilactobacillus folatiphilus SG4_D2 2923362 CP093366.1 Bac0022725 Bombilactobacillus thymidiniphilus SG4_A1 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Bombilactobacillus Bombilactobacillus thymidiniphilus SG4_A1 2923363 CP093365.1 Bac0022726 Apilactobacillus apisilvae SG5_A10 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Apilactobacillus Apilactobacillus apisilvae SG5_A10 2923364 CP093362.1 Bac0022727 Chryseobacterium oryzae ADR-1 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium oryzae ADR-1 2929799 CP094529.1 Bac0022728 Chryseobacterium suipulveris SC2-2 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium suipulveris SC2-2 2929800 CP094532.1 Bac0022729 Streptomyces cattleya MA-4297 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptantibioticus Streptantibioticus cattleyicolor MA-4297 29303 FQ859185.1 Bac0022730 "Mycobacterium hiberniae Hi 11, 14 403 0001" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter hiberniae "Hi 11, 14 403 0001" 29314 AP022609.1 Bac0022731 Alicyclobacillus mengziensis S30H14 Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Paenalicyclobacillus Paenalicyclobacillus mengziensis S30H14 2931921 CP071182.1 Bac0022732 Paenarthrobacter nicotinovorans Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter Paenarthrobacter nicotinovorans gut 29320 CP089293.1 Bac0022733 Leucobacter rhizosphaerae H25R-14 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter rhizosphaerae H25R-14 2932245 CP095043.1 Bac0022734 Leucobacter allii H21R-40 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter allii H21R-40 2932247 CP095045.1 Bac0022735 "Paucilactobacillus oligofermentans AMKR18, AV56" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Paucilactobacillus Paucilactobacillus oligofermentans "AMKR18, AV56" 293371 LN898144.1 Bac0022736 Clostridium scindens Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Lachnoclostridium [Clostridium] scindens positive Rod anaerobic mesophilic cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine "Chains; Chains, Singles" 29347 CP113781.1 Bac0022737 Ruminiclostridium papyrosolvens Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminiclostridium Ruminiclostridium papyrosolvens 29362 CP119677.1 Bac0022738 "Pectobacterium atrosepticum G/39, G39" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium atrosepticum "G/39, G39" negative 29471 CP036163.1 Bac0022739 Yersinia aldovae Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia aldovae 29483 CP009781.1 Bac0022740 Comamonas endophytica 5MLIR Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Comamonas Comamonas endophytica 5MLIR 2949090 CP106881.1 Bac0022741 Borrelia garinii subsp. garinii 20047 Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella garinii 20047 29519 CP018744.1 Bac0022742 Rhodothermus marinus Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus 29549 AP019796.1 Bac0022743 Acholeplasma axanthum S-743 Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum S-743 29552 LR215048.1 Bac0022744 Mycoplasmopsis meleagridis 17529 Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis meleagridis 17529 29561 LR215042.1 Bac0022745 Chryseobacterium paludis CJ51 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium paludis CJ51 2956784 CP099966.1 Bac0022746 Taylorella equigenitalis 61717/77 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Taylorella Taylorella equigenitalis 61717/77 29575 LR134346.1 Bac0022747 Vibrio gigantis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gigantis 296199 AP025492.1 Bac0022748 Nocardia sputorum Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sputorum 2984338 AP026978.1 Bac0022749 Bradyrhizobium barranii 144S4 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium barranii 144S4 2992140 CP086136.1 Bac0022750 Sellimonas catena 12EGH17 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sellimonas Sellimonas catena 12EGH17 2994035 CP173695.1 Bac0022751 Pseudomonas lijiangensis LJ2 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas lijiangensis LJ2 2995658 CP076668.1 Bac0022752 Enterobacter hormaechei subsp. steigerwaltii EN-562 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei EN-562 299766 CP017179.1 Bac0022753 Enterobacter hormaechei subsp. oharae EN-314 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter Enterobacter hormaechei EN-314 301102 CP017180.1 Bac0022754 Spiroplasma platyhelix PALS-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma platyhelix PALS-1 301585 CP051215.1 Bac0022755 Paracoccus aerodenitrificans SCSIO 75817 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus aerodenitrificans SCSIO 75817 3017781 CP115784.1 Bac0022756 Paracoccus sediminicola SCSIO 76264 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus sediminicola SCSIO 76264 3017783 CP115768.1 Bac0022757 Paracoccus albus SCSIO 80058 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus albus SCSIO 80058 3017784 CP115775.1 Bac0022758 Caldicellulosiruptor acetigenus X6B Bacillati Bacillota Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicellulosiruptor Caldicellulosiruptor acetigenus X6B 301953 CP113866.1 Bac0022759 Corynebacterium ramonii FRC0011 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium ramonii FRC0011 3026968 OX444692.1 Bac0022760 Haloarcula litorea GDY20 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula litorea GDY20 3032579 CP119779.1 Bac0022761 Haloarcula halophila DFY41 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula halophila DFY41 3032584 CP119559.1 Bac0022762 Haloarcula halobia X H51 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula halobia X H51 3033388 CP119787.1 Bac0022763 Mobiluncus massiliensis Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Mobiluncus Mobiluncus massiliensis 3036302 OX458329.1 Bac0022764 "Microbacterium albipurpureum ET2, VKPM Ac-2212" Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium albipurpureum "ET2, VKPM Ac-2212" 3050384 CP128170.1 Bac0022765 Alteriqipengyuania flavescens SCSIO 75105 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Pseudoblastomonas Pseudoblastomonas flavescens SCSIO 75105 3053610 CP129107.1 Bac0022766 Providencia zhijiangensis D4759 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Morganellaceae Providencia Providencia zhijiangensis D4759 3053982 CP135990.1 Bac0022767 Natronococcus wangiae AD-5 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus wangiae AD-5 3068275 CP132294.1 Bac0022768 Tepidimonas taiwanensis I1-1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Tepidimonas Tepidimonas taiwanensis I1-1 aerobic mesophilic hot springs; hydrothermal source microbial biofilm community; hydrothermal system; oligotrophic waters; Steep Cone Geyser 307486 CP083911.1 Bac0022769 Thioclava litoralis FTW29 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Thioclava Thioclava litoralis FTW29 3076557 CP135443.1 Bac0022770 Dialister micraerophilus Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Dialister Dialister micraerophilus 309120 CP002725.1 Bac0022771 Pseudomonas grandcourensis DGS24 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas grandcourensis DGS24 3136736 CP150919.1 Bac0022772 Pseudomonas purpurea DGS26 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas purpurea DGS26 3136737 CP150918.1 Bac0022773 Pseudomonas helvetica DGS28 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas helvetica DGS28 3136738 CP150917.1 Bac0022774 Pseudomonas aestiva DGS32 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aestiva DGS32 3136739 CP150916.1 Bac0022775 "Alteromonas mediterranea AM615, 615, AMEC615, English Channel 615" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea "AM615, 615, AMEC615, English Channel 615" 314275 CP004846.1 Bac0022776 "Alteromonas mediterranea AMMED64, Aegean Sea MED64, AMASMED64" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea "AMMED64, Aegean Sea MED64, AMASMED64" 314275 CP004848.1 Bac0022777 "Alteromonas mediterranea AMU7, AMISU7, Ionian Sea U7, U7" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea "AMU7, AMISU7, Ionian Sea U7, U7" 314275 CP004851.1 Bac0022778 "Alteromonas mediterranea AMU8, AMISU8, Ionian Sea U8, U8" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea "AMU8, AMISU8, Ionian Sea U8, U8" 314275 CP004852.1 Bac0022779 "Alteromonas mediterranea AMUM4b, AMISUM4b, Ionian Sea UM4b, UM4b" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea "AMUM4b, AMISUM4b, Ionian Sea UM4b, UM4b" 314275 CP004855.1 Bac0022780 Pseudoalteromonas tunicata D2 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas tunicata D2 314281 CP031961.1 Bac0022781 Acinetobacter chenhuanii XH1741 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter chenhuanii XH1741 3157354 CP157428.1 Bac0022782 Acinetobacter yuyunsongii XH1639 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter yuyunsongii XH1639 3157368 CP157435.1 Bac0022783 Sulfurimonas paralvinellae GO25 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas paralvinellae GO25 317658 CP041406.1 Bac0022784 Mycobacterium phocaicum N4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium phocaicum N4 intertidal sediments 319706 AP022616.1 Bac0022785 Campylobacter fetus subsp. venerealis X/161/5 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus X/161/5 genital tract 32020 CP043435.1 Bac0022786 Photobacterium ganghwense C2.2 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium ganghwense C2.2 320778 CP071325.1 Bac0022787 Spiroplasma tabanidicola TAUS-1 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma tabanidicola TAUS-1 324079 CP046276.1 Bac0022788 Lactobacillus gasseri AM 63 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri AM 63 324831 CP000413.1 Bac0022790 Polaribacter dokdonensis DSW-5 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter dokdonensis DSW-5 326329 CP101505.1 Bac0022791 Paracoccus ferrooxidans BDN-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus ferrooxidans BDN-1 327104 CP038198.1 Bac0022792 Alistipes shahii Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Rikenellaceae Alistipes Alistipes shahii 328814 CP102253.1 Bac0022793 Anaerococcus vaginalis ph9 Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus vaginalis ph9 33037 CP067016.1 Bac0022794 Larkinella insperata Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Larkinella Larkinella insperata 332158 CP110973.1 Bac0022795 Truepera radiovictrix RQ-24 Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix RQ-24 332249 CP133611.1 Bac0022796 Polaromonas hydrogenivorans DQ094183 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Polaromonas Polaromonas hydrogenivorans DQ094183 335476 CP157675.1 Bac0022797 Lactiplantibacillus plantarum subsp. plantarum 46159 Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum 46159 positive 37 Chinese traditional fermented vegetables; fermented batters; fermented food; gut; Japanese pickles; Minas cheese; olives; sourdough 337330 CP024413.1 Bac0022798 Sulfobacillus thermotolerans Kr1 Bacillati Bacillota Clostridia Eubacteriales Clostridiales Family XVII. Incertae Sedis Sulfobacillus Sulfobacillus thermotolerans Kr1 338644 CP019454.1 Bac0022799 Methanoplanus endosymbiosus MC1 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoplanus Methanoplanus endosymbiosus MC1 33865 CP096115.1 Bac0022800 Streptomyces bobili Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces galilaeus 33899 CP023703.1 Bac0022801 Streptomyces costaricanus CR-43 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces murinus CR-43 33900 CP046623.1 Bac0022802 Leuconostoc mesenteroides subsp. dextranicum Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc mesenteroides 33966 CP012009.1 Bac0022803 Burkholderia oklahomensis C6786 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia oklahomensis C6786 342113 CP009555.1 Bac0022804 Microbacterium terricola Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium terricola 344163 CP107222.1 Bac0022805 Micromonospora carbonacea subsp. carbonacea Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora carbonacea 3454472 CP058322.1 Bac0022806 Natronorubrum aibiense 46206 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum aibiense 46206 348826 CP045488.1 Bac0022807 Thalassotalea agarivorans Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Colwelliaceae Thalassotalea Thalassotalea agarivorans 349064 AP027363.1 Bac0022809 Shinella zoogloeoides 1-16M Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Shinella Shinella zoogloeoides 1-16M 352475 CP086610.1 Bac0022810 Mycoplasma nasistruthionis 2F1A Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma nasistruthionis 2F1A 353852 CP040825.1 Bac0022811 Amphritea atlantica M41 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Amphritea Amphritea atlantica M41 355243 AP025284.1 Bac0022812 "Streptomyces mobaraensis IPCR 16-22, 16-22" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces mobaraensis "IPCR 16-22, 16-22" 35621 CP072827.1 Bac0022813 Streptomyces mobaraensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces mobaraensis 35621 CP083590.1 Bac0022814 "Chitinimonas koreensis R2A43-10, R2A 43-10" Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chitinibacteraceae Chitinimonas Chitinimonas koreensis "R2A43-10, R2A 43-10" 356302 CP060704.1 Bac0022815 "Thermococcus sp. BK17S-3-a9, P6" Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. "BK17S-3-a9, P6" 35749 CP015104.1 Bac0022816 Corynebacterium cystitidis 42 Fukuya Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium cystitidis 42 Fukuya 35757 LT906473.1 Bac0022817 Sporomusa rhizae RS Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Sporomusa Sporomusa rhizae RS 357999 CP156925.1 Bac0022818 "Bordetella holmesii 5589, F5101" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella holmesii "5589, F5101" 35814 CP007494.1 Bac0022819 Rhizobium radiobacter Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Agrobacterium Agrobacterium radiobacter 362 CP019701.2 Bac0022820 Deinococcus yunweiensis Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis 367282 CP177252.1 Bac0022821 Halococcus salifodinae BIp Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus salifodinae BIp 36738 CM125062.1 Bac0022822 Clostridium saccharoperbutylacetonicum N1-4(HMT) Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium saccharoperbutylacetonicum N1-4(HMT) 36745 CP004121.1 Bac0022823 Clostridium saccharoperbutylacetonicum N1-504 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium saccharoperbutylacetonicum N1-504 36745 CP016087.1 Bac0022824 Flammeovirga yaeyamensis IR25-3 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga yaeyamensis IR25-3 367791 CP076132.1 Bac0022825 Mycobacterium pulveris 33505 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium pulveris 33505 36813 AP022599.1 Bac0022826 "Gordonia amarae Se6, A-0171" Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia amarae "Se6, A-0171" 36821 CP045810.1 Bac0022827 Clostridium colinum 72042 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Tyzzerella [Clostridium] colinum 72042 feces; rectal mucosa 36835 OW712331.1 Bac0022829 Haloterrigena longa ABH32 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema longum ABH32 370324 CP071463.1 Bac0022830 Mycobacterium pallens czh-8 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium pallens czh-8 370524 CP080333.1 Bac0022831 Pseudonocardia petroleophila 78 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia petroleophila 78 37331 CP060131.1 Bac0022832 Paenibacillus sonchi X19-5 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus sonchi X19-5 373687 CP068595.1 Bac0022833 Flammeovirga kamogawensis YS10 Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga kamogawensis YS10 373891 CP076128.1 Bac0022834 Methylobacterium tardum Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium tardum 374432 CP097484.1 Bac0022835 "Ensifer mexicanus ITTG-R7, ITTG_R7" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium mexicanum "ITTG-R7, ITTG_R7" 375549 CP041238.1 Bac0022836 Schlegelella aquatica wcf1 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sphaerotilaceae Caldimonas Caldimonas aquatica wcf1 376175 CP110257.1 Bac0022837 Corynebacterium pseudogenitalium Furness 162-C2 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudogenitalium Furness 162-C2 38303 CP072934.1 Bac0022838 Corynebacterium tuberculostearicum 5621/02/A Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum 5621/02/A 38304 CP065972.1 Bac0022839 "Corynebacterium tuberculostearicum 8241r‚àö‚àÇr1, 961*00004/99, 962*00016/99" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum "8241r‚àö‚àÇr1, 961*00004/99, 962*00016/99" 38304 CP067012.1 Bac0022840 Corynebacterium tuberculostearicum LDC-20 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum LDC-20 38304 CP068156.1 Bac0022841 Pseudothermotoga elfii Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga elfii 38322 AP014507.1 Bac0022842 Sphingomonas sediminicola Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sediminicola 386874 CP178916.1 Bac0022843 Mycobacterium seoulense 46100 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium seoulense 46100 386911 AP022582.1 Bac0022844 Heyndrickxia oleronia RT 10 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Heyndrickxia Heyndrickxia oleronia RT 10 38875 CP065424.1 Bac0022845 Alicyclobacillus fastidiosus S-TAB Bacillati Bacillota Bacilli Caryophanales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus fastidiosus S-TAB 392011 CP104067.1 Bac0022846 Adlercreutzia equolifaciens subsp. celatus do03 Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Adlercreutzia equolifaciens do03 394340 AP024470.1 Bac0022847 Methanobrevibacter arboriphilus SA Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus SA 39441 AP019779.1 Bac0022848 Sphingorhabdus litoris FR1093 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Parasphingorhabdus Parasphingorhabdus litoris FR1093 394733 CP086727.1 Bac0022849 Corynebacterium hansenii C-138 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium hansenii C-138 394964 CP047211.1 Bac0022850 Methanoculleus receptaculi ZC-2 Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus receptaculi ZC-2 394967 CP137642.1 Bac0022852 Mycobacterium duvalii 141180001 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium duvalii 141180001 environment 39688 AP022563.1 Bac0022853 "Mycobacterium poriferae 14149 0001, MC 47A, 14 149 0001" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium poriferae "14149 0001, MC 47A, 14 149 0001" 39694 AP022570.1 Bac0022854 Mycobacterium tokaiense 47503 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium tokaiense 47503 positive Rod 39695 AP022600.1 Bac0022855 Mucilaginibacter ginsenosidivorans Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter ginsenosidivorans 398053 CP042436.1 Bac0022856 Bradyrhizobium elkanii Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium elkanii 398524 CP126007.1 Bac0022857 Devosia ginsengisoli Gsoil 520 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Devosiaceae Devosia Devosia ginsengisoli Gsoil 520 400770 CP042304.1 Bac0022859 Nonomuraea coxensis 5-38-42 Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea coxensis 5-38-42 404386 CP068985.1 Bac0022860 Azospira restricta Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Azospira Azospira restricta 404405 CP064781.1 Bac0022861 Mycoplasma capricolum subsp. capripneumoniae F38 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum F38 40480 LN515398.1 Bac0022862 Sutterella wadsworthensis Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Sutterellaceae Sutterella Sutterella wadsworthensis 40545 CP068055.1 Bac0022863 Treponema pedis T3552B Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema pedis T3552B 409322 CP045670.1 Bac0022864 Vibrio comitans GHG2-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio comitans GHG2-1 413401 AP024866.1 Bac0022865 Vibrio inusitatus RW14 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio inusitatus RW14 413402 AP024878.1 Bac0022866 Cronobacter dublinensis subsp. lactaridi E464 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter dublinensis E464 413499 CP188002.1 Bac0022867 Cronobacter dublinensis subsp. lausannensis E515 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter dublinensis E515 413500 CP188004.1 Bac0022868 "Cronobacter muytjensii 83-07-023, E603, LRA 023 07 83" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Cronobacter Cronobacter muytjensii "83-07-023, E603, LRA 023 07 83" 413501 CP012268.1 Bac0022869 "Methylobacterium phyllosphaerae CBMB27, EF 126746" Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium phyllosphaerae "CBMB27, EF 126746" 418223 CP015367.1 Bac0022870 Blautia wexlerae Walcc: 14507 Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia wexlerae Walcc: 14507 418240 CP102267.1 Bac0022871 Nocardioides marinisabuli SBS-12 Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides marinisabuli SBS-12 419476 CP059163.1 Bac0022872 Enterococcus saccharolyticus subsp. saccharolyticus HF 62 Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus saccharolyticus HF 62 41997 CP118957.1 Bac0022873 Streptomyces deccanensis DAS-139 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces deccanensis DAS-139 424188 CP092431.1 Bac0022874 Sphingomonas insulae DS-28 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas insulae DS-28 424800 CP048422.1 Bac0022875 Streptomyces collinus Ist 301 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces collinus Ist 301 42684 CP133771.1 Bac0022876 Streptomyces chromofuscus 13638/58 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces chromofuscus 13638/58 42881 CP063374.1 Bac0022877 Serratia entomophila A1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia entomophila A1 42906 CP082787.1 Bac0022878 Nitratireductor kimnyeongensis Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Nitratireductor Nitratireductor kimnyeongensis 430679 CP078143.1 Bac0022879 Aminipila butyrica FH042 Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae Aminipila Aminipila butyrica FH042 433296 CP048649.1 Bac0022880 Mycobacterium branderi 52157 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium branderi 52157 43348 AP022606.1 Bac0022881 Acetobacter aceti Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Acetobacteraceae Acetobacter Acetobacter aceti 435 AP023326.1 Bac0022882 Microbulbifer celer ISL-39 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer celer ISL-39 435905 CP087715.1 Bac0022883 Paenarthrobacter aurescens 579 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter Paenarthrobacter aurescens 579 43663 CP157456.1 Bac0022884 Jonesia denitrificans 55134 Bacillati Actinomycetota Actinomycetes Micrococcales Jonesiaceae Jonesia Jonesia denitrificans 55134 43674 LS483423.1 Bac0022885 Corynebacterium amycolatum S160 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium amycolatum S160 43765 CP046975.1 Bac0022886 "Corynebacterium amycolatum PAP 232, Co 232" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium amycolatum "PAP 232, Co 232" 43765 CP065628.1 Bac0022887 "Corynebacterium amycolatum PAP 291, Co 291" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium amycolatum "PAP 291, Co 291" 43765 CP066023.1 Bac0022888 "Corynebacterium amycolatum PAP 272, Co272" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium amycolatum "PAP 272, Co272" 43765 CP068168.1 Bac0022889 "Corynebacterium amycolatum PAP 290, Co 290" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium amycolatum "PAP 290, Co 290" 43765 CP068169.1 Bac0022890 "Corynebacterium urealyticum Armendariz, 1" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum "Armendariz, 1" 43771 LT906481.1 Bac0022891 Corynebacterium urealyticum Garcia Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum Garcia 43771 CP004085.1 Bac0022892 Megamonas funiformis YITM815 Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas funiformis YITM815 437897 CP048627.1 Bac0022893 Haloarcula sp. Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula sp. 44098 CP073366.1 Bac0022894 Corynebacterium massiliense 5402485 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium massiliense 5402485 441501 CP063189.1 Bac0022895 "Mycobacterium avium subsp. avium SSC 1336, 14 031 0002, Vet. 1387" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium avium "SSC 1336, 14 031 0002, Vet. 1387" 44454 CP046507.1 Bac0022896 Vibrio artabrorum Vb 11.8 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio artabrorum Vb 11.8 446374 AP025458.1 Bac0022897 Adlercreutzia equolifaciens subsp. equolifaciens FJC-B9 Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Adlercreutzia equolifaciens FJC-B9 446660 AP013105.1 Bac0022898 Corynebacterium auris Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium auris 44750 CP047047.1 Bac0022899 Nocardioides humi Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides humi 449461 CP041146.1 Bac0022900 Campylobacter canadensis L266 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter canadensis L266 449520 CP035946.1 Bac0022901 Amphritea japonica Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Oceanospirillaceae Amphritea Amphritea japonica 452627 AP025761.1 Bac0022902 Paracoccus aestuarii B7 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus aestuarii B7 453842 CP067169.1 Bac0022903 "Desulfonema magnum 4be13, Montpellier" Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema magnum "4be13, Montpellier" 45655 CP061800.1 Bac0022904 Chloracidobacterium thermophilum Pseudomonadati Acidobacteriota Blastocatellia Chloracidobacteriales Chloracidobacteriaceae Chloracidobacterium Chloracidobacterium thermophilum 458033 CP002514.1 Bac0022905 Abiotrophia defectiva subsp. subspepi var. varfungi Bacillati Bacillota Bacilli Lactobacillales Aerococcaceae Abiotrophia Abiotrophia defectiva 46125 CP146287.1 Bac0022906 "Clostridium chauvoei 2585, 10123" Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium chauvoei "2585, 10123" 46867 CP018624.1 Bac0022907 Deinococcus altitudinis ME-04-01-32 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus altitudinis ME-04-01-32 468914 CP129415.1 Bac0022908 Deinococcus radiomollis PO-04-20-132 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiomollis PO-04-20-132 468916 CP129906.1 Bac0022909 Fusobacterium gonidiaformans 3554A Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans 3554A 469615 CP028106.1 Bac0022910 "Mycobacterium stomatepiae T 11, T 3" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium stomatepiae "T 11, T 3" 470076 AP022587.1 Bac0022911 Prevotella histicola T05-04 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella histicola T05-04 470565 CP181052.1 Bac0022912 Streptococcus infantarius subsp. infantarius Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantarius 471872 CP065994.1 Bac0022913 Shewanella basaltis J83 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella basaltis J83 472183 CP182944.1 Bac0022914 "Altererythrobacter ishigakiensis NITE-AP48, JPCCMB0017" Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Altererythrobacter Altererythrobacter ishigakiensis "NITE-AP48, JPCCMB0017" 476157 CP015963.1 Bac0022915 Lautropia mirabilis AB2188 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Lautropia Lautropia mirabilis AB2188 supramucosal niche 47671 LR134378.1 Bac0022916 Streptomyces tubercidicus IPCR 585 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tubercidicus IPCR 585 47759 CP114205.1 Bac0022917 Filimonas lacunae YT21 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Filimonas Filimonas lacunae YT21 477680 AP017422.1 Bac0022918 Spiroplasma phoeniceum P40 Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma phoeniceum P40 47835 CP031088.1 Bac0022919 Micromonospora sagamiensis MK-65 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sagamiensis MK-65 47875 AP023438.1 Bac0022920 Guyparkeria halophila 204 Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales Thioalkalibacteraceae Guyparkeria Guyparkeria halophila 204 47960 CP140153.1 Bac0022921 Microbulbifer hydrolyticus IRE-31 Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer hydrolyticus IRE-31 48074 CP047491.1 Bac0022922 "Escherichia coli Crooks, Crookes" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli "Crooks, Crookes" 37 481805 CP043852.1 Bac0022923 Neisseria cinerea 194 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria cinerea 194 483 CP065726.1 Bac0022924 Bacillus inaquosorum DV7-B-4 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus inaquosorum DV7-B-4 483913 CP029465.1 Bac0022925 Pseudomonas anuradhapurensis RD8MR3 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas anuradhapurensis RD8MR3 485870 CP077097.1 Bac0022926 Pseudomonas wayambapalatensis RW3S1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas wayambapalatensis RW3S1 485895 CP077096.1 Bac0022927 Pseudomonas promysalinigenes RW10S1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas promysalinigenes RW10S1 485898 CP077094.1 Bac0022928 Campylobacter lari subsp. concheus Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari 488545 CP043426.1 Bac0022929 Neisseria polysaccharea LNP N 462 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria polysaccharea LNP N 462 489 CP181243.1 Bac0022930 Arachidicoccus ginsenosidivorans Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Arachidicoccus Arachidicoccus ginsenosidivorans 496057 CP042434.1 Bac0022931 Campylobacter subantarcticus R-3023 Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter subantarcticus R-3023 497724 CP007773.1 Bac0022932 Kosakonia oryzae Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Kosakonia Kosakonia oryzae 497725 CP014007.2 Bac0022935 Kingella denitrificans A358/72 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella denitrificans A358/72 502 CP065999.1 Bac0022936 "Kingella oralis UB 38(Dewhirst), UB-38" Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Kingella Kingella oralis "UB 38(Dewhirst), UB-38" Permamem membranes; supramucosal niche 505 CP059569.1 Bac0022937 Mycoplasma cottewii VIS Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii VIS 51364 CP103424.1 Bac0022938 Shewanella vesiculosa M7 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella vesiculosa M7 518738 CP073588.1 Bac0022939 Bordetella parapertussis MIS180 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella parapertussis MIS180 519 CP085972.1 Bac0022940 Bordetella parapertussis 522 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Bordetella Bordetella parapertussis 522 519 CP173223.1 Bac0022941 Aquitalea denitrificans 5YN1-3 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Chromobacteriaceae Aquitalea Aquitalea denitrificans 5YN1-3 519081 CP047241.1 Bac0022942 Mycoplasma anserisalpingitidis 1220 Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma anserisalpingitidis 1220 519450 CP042295.1 Bac0022943 Acetobacterium carbinolicum Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Acetobacterium Acetobacterium carbinolicum 52690 CP173357.1 Bac0022944 Mycobacterium mageritense 938 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium mageritense 938 53462 AP022567.1 Bac0022945 "Thermobifida alba A-0077, 1900" Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Thermobifida Thermobifida alba "A-0077, 1900" 53522 CP051627.1 Bac0022946 Mycoplasmopsis edwardii Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis edwardii 53558 LS991951.1 Bac0022947 Methanolobus zinderi SD-1 Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus zinderi SD-1 536044 CP058215.1 Bac0022948 Bacillus pumilus 272 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus 272 536229 LT906438.1 Bac0022949 Pelagerythrobacter marensis MSW-14 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Pelagerythrobacter Pelagerythrobacter marensis MSW-14 543877 CP011805.1 Bac0022950 Veillonella dispar ERN Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella dispar ERN 546273 LR134375.1 Bac0022951 Isoptericola jiangsuensis CLG Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Isoptericola Isoptericola jiangsuensis CLG 548579 CP182942.1 Bac0022952 Erwinia amylovora S59/5 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia amylovora S59/5 552 CP066796.1 Bac0022953 "Brenneria nigrifluens EN 101, WC1" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Brenneria Brenneria nigrifluens "EN 101, WC1" 55210 CP034036.1 Bac0022954 Vibrio gallaecicus VB 8.9 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio gallaecicus VB 8.9 552386 AP025490.1 Bac0022955 Halobacillus naozhouensis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Halobacillus Halobacillus naozhouensis 554880 CP121671.1 Bac0022956 Magnetospirillum gryphiswaldense MSR-1 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Rhodospirillaceae Magnetospirillum Magnetospirillum gryphiswaldense MSR-1 55518 CP027526.1 Bac0022957 Ensifer canadensis T173 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Ensifer Ensifer canadensis T173 555315 CP083370.1 Bac0022958 Dehalobacter restrictus PER-K23 Bacillati Bacillota Clostridia Eubacteriales Desulfitobacteriaceae Dehalobacter Dehalobacter restrictus PER-K23 55583 CP007033.1 Bac0022959 Polynucleobacter difficilis AM-8B5 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter difficilis AM-8B5 556054 CP023276.1 Bac0022960 "Corynebacterium freiburgense 1045, 1045T" Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium freiburgense "1045, 1045T" 556548 CP047355.1 Bac0022961 Escherichia fergusonii Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia fergusonii bat guano 564 CP042942.1 Bac0022962 Escherichia fergusonii 3296-73 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia fergusonii 3296-73 bat guano 564 CP042946.1 Bac0022963 Escherichia fergusonii Ef137 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia fergusonii Ef137 bat guano 564 CP077242.1 Bac0022964 Spirosoma rigui WPCB118 Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma rigui WPCB118 564064 CP020105.1 Bac0022965 Escherichia hermannii 980-72 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Atlantibacter Atlantibacter hermannii 980-72 565 CP065700.1 Bac0022966 Dickeya poaceiphila Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya poaceiphila 568768 CP042220.2 Bac0022967 Methylobacterium bullatum F3.2 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium Methylobacterium bullatum F3.2 570505 CP162530.1 Bac0022968 Luteipulveratus mongoliensis MN07-A0370 Bacillati Actinomycetota Actinomycetes Micrococcales Dermacoccaceae Luteipulveratus Luteipulveratus mongoliensis MN07-A0370 571913 CP011112.1 Bac0022969 Polaribacter gangjinensis Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Polaribacter Polaribacter gangjinensis 574710 CP150662.1 Bac0022970 Pseudothermotoga hypogea Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga hypogea 57487 AP014508.1 Bac0022971 Deinococcus grandis KS 0485 Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis KS 0485 57498 AP021849.1 Bac0022972 Klebsiella sp. J1 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella sp. J1 negative gut; lower respiratory tract; rhizosphere; sewage water; sputum 576 CP013711.1 Bac0022973 "Streptomyces iranensis 35, HM 35" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces iranensis "35, HM 35" 576784 CP136563.1 Bac0022974 Tsukamurella tyrosinosolvens Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella tyrosinosolvens 57704 LR134443.1 Bac0022975 Tsukamurella tyrosinosolvens MH-1 Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella tyrosinosolvens MH-1 57704 CP019066.1 Bac0022976 Mycobacterium paraterrae 05-2522 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paraterrae 05-2522 577492 CP092488.2 Bac0022978 Streptomyces platensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces platensis 58346 CP023691.1 Bac0022979 Acidaminococcus fermentans VR4 Bacillati Bacillota Negativicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus fermentans VR4 591001 CP085936.1 Bac0022980 Salmonella enterica subsp. houtenae 264-66 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica 264-66 59205 LS483478.1 Bac0022981 Streptomyces osmaniensis OU-63 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces osmaniensis OU-63 593134 CP075611.1 Bac0022982 "Neisseria wadsworthii 2507, WC 05-2507" Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria wadsworthii "2507, WC 05-2507" 607711 CP059565.1 Bac0022983 "Neisseria shayeganii 12337, WC 04-12337" Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria shayeganii "12337, WC 04-12337" 607712 CP059567.1 Bac0022984 Saccharopolyspora spinosa Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora spinosa 60894 CP185864.1 Bac0022985 Corynebacterium durum Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium durum 61592 CP047200.1 Bac0022986 "Granulicatella elegans B1333, B-1333" Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Granulicatella Granulicatella elegans "B1333, B-1333" 626369 CP085953.1 Bac0022987 Bifidobacterium catenulatum subsp. kashiwanohense HM2-2 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium catenulatum HM2-2 630129 AP012327.1 Bac0022988 Sporosarcina thermotolerans Bacillati Bacillota Bacilli Caryophanales Caryophanaceae Sporosarcina Sporosarcina thermotolerans 633404 CP125968.1 Bac0022989 Acidithiobacillus thiooxidans 3/TA Pseudomonadati Pseudomonadota Acidithiobacillia Acidithiobacillales Acidithiobacillaceae Acidithiobacillus Acidithiobacillus thiooxidans 3/TA 637390 CP045571.1 Bac0022990 Bifidobacterium actinocoloniiforme LISLUCIII-P2 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium actinocoloniiforme LISLUCIII-P2 638619 CP011786.1 Bac0022991 Neisseria zalophi Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria zalophi 640030 CP031700.1 Bac0022992 Desulfurobacterium thermolithotrophum HR11 Pseudomonadati Aquificota Aquificia Desulfurobacteriales Desulfurobacteriaceae Desulfurobacterium Desulfurobacterium thermolithotrophum HR11 64160 CP176813.1 Bac0022993 Streptomyces sp. Bl-567201 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. DSM 40239 Bl-567201 642496 CP023698.1 Bac0022994 Aeromonas media RM Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales Aeromonadaceae Aeromonas Aeromonas media RM 651 CP050786.1 Bac0022995 Sphingomonas alpina S8-3 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas alpina S8-3 653931 CP061038.1 Bac0022996 Kushneria phosphatilytica YCWA18 Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Halomonadaceae Kushneria Kushneria phosphatilytica YCWA18 657387 CP043420.1 Bac0022997 Paracoccus fistulariae 46164 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus fistulariae 46164 658446 CP067136.1 Bac0022998 Paracoccus stylophorae KTW-16 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus stylophorae KTW-16 659350 CP067134.1 Bac0022999 Flavisolibacter ginsenosidimutans Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavisolibacter Flavisolibacter ginsenosidimutans 661481 CP042433.1 Bac0023000 "Pantoea stewartii A14, ZO10, 3152, SS11" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Pantoea Pantoea stewartii "A14, ZO10, 3152, SS11" 66269 CP046558.1 Bac0023001 Streptomyces nojiriensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces nojiriensis 66374 CP071139.1 Bac0023002 Borrelia garinii subsp. bavariensis PBi Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella bavariensis PBi 664662 CP028872.1 Bac0023003 Mixta calida 1400/07 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Mixta Mixta calida 1400/07 665913 CP026378.1 Bac0023004 "Edwardsiella tarda K 349, K349, 4-78, 1483-59" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Hafniaceae Edwardsiella Edwardsiella tarda "K 349, K349, 4-78, 1483-59" 667121 CP084506.1 Bac0023005 Sulfurospirillum multivorans N Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum multivorans N 66821 CP042966.1 Bac0023006 Mycobacterium alvei Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium alvei 67081 AP022565.1 Bac0023007 Streptomyces cinereoruber subsp. cinereoruber PSAM 192 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cinereoruber PSAM 192 67260 CP023693.1 Bac0023008 Streptomyces asterosporus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces calvus 67282 CP022310.1 Bac0023009 Streptomyces cinnabarinus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cinnabarinus 67287 CP114413.1 Bac0023010 Streptomyces hawaiiensis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces hawaiiensis 67305 CP021978.1 Bac0023011 "Streptomyces lavenduligriseus 15784-1, Schering 353" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lavenduligriseus "15784-1, Schering 353" 67315 CP050504.1 Bac0023012 "Streptomyces prasinus FH 1280, FH 3263, FH3263, FH1280" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces prasinus "FH 1280, FH 3263, FH3263, FH1280" 67345 CP023697.1 Bac0023013 Streptomyces puniceus BJ-611 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces californicus BJ-611 67351 CP070245.1 Bac0023014 Streptomyces puniceus H 37 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces californicus H 37 67351 CP070249.1 Bac0023015 Streptomyces puniceus 51R3639 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces californicus 51R3639 67351 CP070254.1 Bac0023016 "Streptomyces puniceus FD3568, PF 1314-5" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces californicus "FD3568, PF 1314-5" 67351 CP070260.1 Bac0023017 Streptomyces puniceus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces californicus 67351 CP070242.1 Bac0023018 Streptomyces tanashiensis Kala Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tanashiensis Kala 67367 CP084204.1 Bac0023019 "Actinomyces weissii 2298, 2298/06" Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces weissii "2298, 2298/06" 675090 CP066802.1 Bac0023020 Aquibium microcysteis NIBR3 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aquibium Aquibium microcysteis NIBR3 675281 CP061080.1 Bac0023021 Citrobacter rodentium DO 14784 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Citrobacter Citrobacter rodentium DO 14784 negative 67825 CP082833.1 Bac0023022 Corynebacterium canis 1170 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium canis 1170 679663 CP047080.1 Bac0023023 Methanothermobacter tenebrarum RMAS Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter tenebrarum RMAS 680118 AP025698.1 Bac0023024 Ensifer garamanticus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium garamanticum 680247 CP120373.1 Bac0023025 Ensifer numidicus Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhizobiaceae Sinorhizobium Sinorhizobium numidicum 680248 CP120368.1 Bac0023026 Agarivorans gilvus WH0801 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Agarivorans Agarivorans gilvus WH0801 680279 CP013021.1 Bac0023027 Streptomyces bacillaris Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces bacillaris 68179 CP029378.1 Bac0023028 Streptomyces iakyrus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces iakyrus 68219 CP143088.1 Bac0023029 Streptomyces spectabilis Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces spectabilis 68270 CP023690.1 Bac0023030 Streptomyces tuirus Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tuirus 68278 AP023439.1 Bac0023031 Leucobacter denitrificans M1T8B10 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter denitrificans M1T8B10 683042 CP060716.1 Bac0023032 Microbacterium suwonense M1T8B9 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium suwonense M1T8B9 683047 AP027728.1 Bac0023033 Streptococcus lactarius MV1 Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus lactarius MV1 684066 CP072329.1 Bac0023034 Bacillus amyloliquefaciens F Bacillati Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus amyloliquefaciens F 692420 FN597644.1 Bac0023035 Treponema socranskii subsp. buccale Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema socranskii 69713 CP054258.1 Bac0023036 Clostridium gelidum C5S11 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium gelidum C5S11 704125 AP024849.1 Bac0023037 "Arcobacter trophiarum 64, 64/2-45d5/R-39974" Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter trophiarum "64, 64/2-45d5/R-39974" 708186 CP031367.1 Bac0023038 Shewanella oneidensis MR-1 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Fresh water 70863 AE014299.2 Bac0023039 Micromonospora halotolerans CR18 Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora halotolerans CR18 709879 CP134876.1 Bac0023040 Methanobacterium petrolearium Mic5c12 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium Mic5c12 710190 AP027739.1 Bac0023041 Methanobacterium ferruginis Mic6c05 Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium ferruginis Mic6c05 710191 AP027738.1 Bac0023042 Shewanella dokdonensis UDC329 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Shewanellaceae Shewanella Shewanella dokdonensis UDC329 712036 CP074572.1 Bac0023043 Corynebacterium confusum Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium confusum 71254 CP047202.1 Bac0023044 Amycolatopsis acidiphila 46058 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis acidiphila 46058 715473 CP090063.1 Bac0023045 Methanoculleus palmolei INSLUZ Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus palmolei INSLUZ 72612 CP137641.1 Bac0023046 Brevundimonas staleyi Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas staleyi 74326 CP169082.1 Bac0023047 "Spiroplasma eriocheiris CRAB, TDA-040725-5" Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma eriocheiris "CRAB, TDA-040725-5" 743698 CP001973.1 Bac0023048 Mesomycoplasma ovipneumoniae Bacillati Mycoplasmatota Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae 743968 CP118522.1 Bac0023049 Actinobacillus suis 1276/61 Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus suis 1276/61 743972 CP009159.1 Bac0023050 Treponema rectale CHPA Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema rectale CHPA 744512 CP031517.1 Bac0023051 Treponema ruminis Ru1 Pseudomonadati Spirochaetota Spirochaetia Treponematales Treponemataceae Treponema Treponema ruminis Ru1 744515 CP031518.1 Bac0023052 Staphylococcus capitis subsp. urealyticus Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus capitis 74703 CP145258.1 Bac0023053 Hymenobacter yonginensis HMD1010 Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter yonginensis HMD1010 748197 CP115396.1 Bac0023054 Pseudomonas balearica SP1402 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Stutzerimonas Stutzerimonas balearica SP1402 74829 CP007511.1 Bac0023055 "Pasteurella dagmatis SDH 953/60, 953/60" Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Pasteurella Pasteurella dagmatis "SDH 953/60, 953/60" 754 LT906448.1 Bac0023056 Mycoplasma miroungigenitalium ES2806-GEN Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma miroungigenitalium ES2806-GEN 754515 CP053096.1 Bac0023057 Mycoplasma miroungirhinis ES2806-NAS Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma miroungirhinis ES2806-NAS 754516 CP053097.1 Bac0023058 Mycoplasma phocoenae C264-GEN Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma phocoenae C264-GEN 754517 CP051481.1 Bac0023059 "Duganella zoogloeoides OSU 115, 115" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella Duganella zoogloeoides "OSU 115, 115" 75659 CP140152.1 Bac0023060 Weissella ceti Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Weissella Weissella ceti 759620 CP074441.1 Bac0023061 Vibrio rumoiensis Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio rumoiensis 76258 AP018685.1 Bac0023062 Campylobacter hominis CH001A Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter hominis CH001A gut; gut microbiome; oral cavity 76517 CP082871.1 Bac0023063 Shouchella hunanensis Bacillati Bacillota Bacilli Caryophanales Bacillaceae Shouchella Shouchella hunanensis 766894 CP117834.1 Bac0023064 "Segatella bryantii B14, B14" Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella bryantii "B14, B14" ruminal microbiomes 77095 CP091799.1 Bac0023065 "Rickettsia prowazekii Breinl, Brein1" Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Rickettsia Rickettsia prowazekii "Breinl, Brein1" 782 CP004889.1 Bac0023066 Orientia tsutsugamushi Karp Pseudomonadati Pseudomonadota Alphaproteobacteria Rickettsiales Rickettsiaceae Orientia Orientia tsutsugamushi Karp 784 CP094645.1 Bac0023067 Sphingobacterium lactis Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium lactis 797291 CP049246.1 Bac0023068 "Shouchella clausii PN 23, C 360" Bacillati Bacillota Bacilli Caryophanales Bacillaceae Shouchella Shouchella clausii "PN 23, C 360" 79880 CP019985.1 Bac0023069 Erwinia pyrifoliae Ep1/96 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia pyrifoliae Ep1/96 79967 FP236842.1 Bac0023070 Herbaspirillum rubrisubalbicans B579 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Herbaspirillum Herbaspirillum rubrisubalbicans B579 80842 CP024996.1 Bac0023071 Acidovorax citrulli M6 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Paracidovorax Paracidovorax citrulli M6 80869 CP029373.1 Bac0023073 Campylobacter gracilis Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter gracilis 824 CP012196.1 Bac0023074 Fibrobacter succinogenes S85 Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter succinogenes S85 834 CP001792.1 Bac0023075 Clostridium autoethanogenum JA1-1 Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium autoethanogenum JA1-1 84023 CP012395.1 Bac0023076 Slackia heliotrinireducens RHS 1 Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Slackia Slackia heliotrinireducens RHS 1 84110 LR134379.1 Bac0023077 Mannheimia glucosida Pseudomonadati Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia glucosida 85401 CP097335.1 Bac0023078 "Desulfonema limicola 5ac10, Jadebusen" Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema limicola "5ac10, Jadebusen" 859314 CP061799.1 Bac0023079 "Chlamydia pecorum Bo/E58, E58, 14DC102" Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia pecorum "Bo/E58, E58, 14DC102" 85991 CP002608.1 Bac0023080 Chlamydia pecorum P787 Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia pecorum P787 85991 CP004035.1 Bac0023081 Microbulbifer elongatus Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Microbulbiferaceae Microbulbifer Microbulbifer elongatus 86173 CP088953.1 Bac0023082 Mucilaginibacter ginsenosidivorax KHI28 Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter ginsenosidivorax KHI28 862126 CP042437.1 Bac0023083 Corynebacterium nuruki S6-4 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium nuruki S6-4 863239 CP042429.1 Bac0023084 "Escherichia coli U5/41, U 5/41" Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli "U5/41, U 5/41" 866789 CP033092.2 Bac0023085 Halosimplex pelagicum R2 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex pelagicum R2 869886 CP058909.1 Bac0023086 Halosimplex rubrum R27 Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex rubrum R27 869889 CP058910.1 Bac0023087 Flavobacterium ginsengisoli Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium ginsengisoli 871694 CP121110.1 Bac0023088 Massilia flava Y9 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Pseudoduganella Pseudoduganella flava Y9 871742 CP046904.1 Bac0023089 Thermus antranikianii HN3-7 Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus antranikianii HN3-7 88190 CP046617.1 Bac0023090 Listeria monocytogenes 21 Bacillati Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes 21 882095 FR733643.1 Bac0023091 "Caulobacter segnis TK 0059, TK0059" Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter segnis "TK 0059, TK0059" 88688 CP027850.1 Bac0023092 Neisseria elongata subsp. glycolytica 6171/75 Pseudomonadati Pseudomonadota Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria elongata 6171/75 88719 LS483435.1 Bac0023093 Blautia luti BInIX Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia luti BInIX 89014 AP028156.1 Bac0023094 Thermococcus aggregans TY Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus aggregans TY 110163 CP099582.1 Bac0023095 Bartonella birtlesii Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Bartonellaceae Bartonella Bartonella birtlesii 111504 CM001557.1 Bac0023096 Pseudoalteromonas undina 272 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas undina 272 1117320 AHCF03000004.1 Bac0023097 Luteimonas dalianensis Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas dalianensis 1148196 CP186085.1 Bac0023099 "Gimesia maris Mal35, Malle 35" Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia maris "Mal35, Malle 35" 122 CP036341.1 Bac0023100 Dickeya chrysanthemi EC17 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya chrysanthemi EC17 1223569 CM001974.1 Bac0023101 Dickeya dadantii subsp. dieffenbachiae Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya dadantii 1223574 CM001978.1 Bac0023102 Dickeya paradisiaca Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Musicola Musicola paradisiaca 1224150 CM001857.1 Bac0023103 "Staphylococcus simulans MK 148, MK148" Bacillati Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus simulans "MK 148, MK148" bovine milk; Chinese dry sausages; milk; Qianwufu sausage; TA; teat apex; teat apices 1286 LT963435.1 Bac0023104 Pseudomonas brenneri 97-391 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas brenneri 97-391 129817 LT629800.1 Bac0023105 Mesobacillus jeotgali YKJ-10 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Mesobacillus Mesobacillus jeotgali YKJ-10 129985 CP025025.1 Bac0023106 Brevundimonas albigilva NHI-13 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Brevundimonas Brevundimonas albigilva NHI-13 1312364 CP097298.1 Bac0023107 Pseudoalteromonas mariniglutinosa Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas mariniglutinosa 1315277 AQHC01000027.1 Bac0023108 Pseudoalteromonas prydzensis MB8-11 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas prydzensis MB8-11 1315282 AQHH01000021.1 Bac0023109 "Paenibacillus glucanolyticus S93, B-14679" Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus glucanolyticus "S93, B-14679" 1349777 CP015286.1 Bac0023110 Paenibacillus thiaminolyticus 1393 Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus thiaminolyticus 1393 1349794 CP041405.1 Bac0023111 "Pseudomonas granadensis F-278,770" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas granadensis "F-278,770" 1421430 LT629778.1 Bac0023112 Pseudomonas aeruginosa PRD-10 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa PRD-10 1424337 CP039749.1 Bac0023113 "Bifidobacterium longum subsp. suis SU859, SU 859" Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium longum "SU859, SU 859" 1437597 LT629712.1 Bac0023114 "Mycobacterium fortuitum subsp. fortuitum Cruz 1, GB 178, Gdf M93, Lausanne 1021, X42, 140410001" Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium fortuitum "Cruz 1, GB 178, Gdf M93, Lausanne 1021, X42, 140410001" chloraminated water; chlorinated water 144549 CP014258.1 Bac0023115 Butyricimonas paravirosa 214-4 Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Butyricimonas Butyricimonas paravirosa 214-4 1472417 CP043839.1 Bac0023116 "Burkholderia dolosa PC688, R-3073" Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia dolosa "PC688, R-3073" Yes 152500 CP086006.1 Bac0023117 Burkholderia dolosa HI2112 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia dolosa HI2112 Yes 152500 JAJFOB010000002.1 Bac0023118 Metabacillus endolithicus JC267 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Metabacillus Metabacillus endolithicus JC267 1535204 CP095550.1 Bac0023119 Yersinia kristensenii subsp. rochesterensis EPLC-04 Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Yersinia Yersinia rochesterensis EPLC-04 1604335 CP032482.1 Bac0023120 Paenibacillus physcomitrellae XB Bacillati Bacillota Bacilli Caryophanales Paenibacillaceae Paenibacillus Paenibacillus physcomitrellae XB 1619311 CP022584.1 Bac0023121 Saccharothrix algeriensis SA 233 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix algeriensis SA 233 173560 CP072788.1 Bac0023122 Streptomyces griseocarneus IMC S-0603 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces alboverticillatus IMC S-0603 173770 CP071595.1 Bac0023123 Polynucleobacter arcticus UK-Long2-W17 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter arcticus UK-Long2-W17 1743165 CP028940.1 Bac0023124 Polynucleobacter ibericus es-MAR-2 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter ibericus es-MAR-2 1819725 CP061309.1 Bac0023125 Pseudomonas mediterranea 9.1 Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas mediterranea 9.1 183795 LT629790.1 Bac0023126 "Streptomyces anulatus FBUA 431, Sch‚àö‚àÇn. 192" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces anulatus "FBUA 431, Sch‚àö‚àÇn. 192" 1892 CM003601.1 Bac0023127 "Streptomyces sclerotialus 147, 44" Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sclerotialus "147, 44" 1957 JBFOHP010000002.1 Bac0023128 Clostridium bovifaecis BXX Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium bovifaecis BXX 2184719 CP046522.1 Bac0023129 Chitinophaga alhagiae T22 Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga Chitinophaga alhagiae T22 2203219 CP029600.1 Bac0023130 Marinibacterium anthonyi deltapLA6_08 Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Marinibacterium Marinibacterium anthonyi deltapLA6_08 2301217 CP031585.1 Bac0023131 Actinomyces lilanjuaniae 2129 Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces lilanjuaniae 2129 2321394 CP032514.1 Bac0023132 Pseudoalteromonas aliena SW19 Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas aliena SW19 247523 AQGU01000029.1 Bac0023133 Mycolicibacterium nivoides Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium nivoides 2487344 CP034072.1 Bac0023134 Chryseobacterium aureum 17S1E7 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium aureum 17S1E7 2497456 CP034661.1 Bac0023135 Gimesia aquarii V202 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia aquarii V202 2527964 CP037422.1 Bac0023136 Gimesia aquarii V144 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia aquarii V144 2527964 CP037920.1 Bac0023137 Gimesia algae Pan161 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia algae Pan161 2527971 CP036343.1 Bac0023138 "Gimesia alba Pan241weiss, Pan241w" Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia alba "Pan241weiss, Pan241w" 2527973 CP036269.1 Bac0023139 "Tautonia plasticadhaerens El Plastico, ElP" Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Tautonia Tautonia plasticadhaerens "El Plastico, ElP" 2527974 CP036426.1 Bac0023140 "Gimesia fumaroli Enrichment17, Enr17" Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia fumaroli "Enrichment17, Enr17" 2527976 CP037452.1 Bac0023141 "Gimesia panareensis Enrichment 10, Enr10" Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia panareensis "Enrichment 10, Enr10" 2527978 CP037421.1 Bac0023142 Agromyces intestinalis CFWR-9 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces Agromyces intestinalis CFWR-9 2592652 CP043505.1 Bac0023143 Shouchella miscanthi AK13 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Shouchella Shouchella miscanthi AK13 2598861 CP042163.1 Bac0023144 Gimesia chilikensis HG66A1 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia chilikensis HG66A1 2605989 CP036266.1 Bac0023145 Gimesia chilikensis MalM14 Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia chilikensis MalM14 2605989 CP036342.1 Bac0023146 "Gimesia chilikensis AV41, V6" Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia chilikensis "AV41, V6" 2605989 CP036347.1 Bac0023147 "Spirosoma endbachense I24, I-24" Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma endbachense "I24, I-24" 2666025 CP045997.1 Bac0023148 Caulobacter soli Ji-3-8 Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter soli Ji-3-8 2708539 CP049199.1 Bac0023149 Selenomonas timonae Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Centipeda Centipeda timonae 2754044 CP060204.1 Bac0023150 Sphingosinicella flava UDD2 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomicrobiaceae Allosphingosinicella Allosphingosinicella flava UDD2 2771430 CP065592.1 Bac0023151 Mycobacterium senriense TY59 Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium senriense TY59 2775496 AP024828.1 Bac0023152 Amycolatopsis sp. Q1 Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. DSM 110486 Q1 2865832 CP080519.1 Bac0023153 Luteimonas fraxinea D4P002 Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Luteimonas Luteimonas fraxinea D4P002 2901869 CP089507.1 Bac0023154 "Methanofollis formosanus ML15, N2M9704" Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis formosanus "ML15, N2M9704" 299308 CP037968.1 Bac0023155 "Alteromonas mediterranea AMU4, AMISU4, Ionian Sea U4, U4" Pseudomonadati Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae Alteromonas Alteromonas mediterranea "AMU4, AMISU4, Ionian Sea U4, U4" 314275 CP004849.1 Bac0023156 "Amycolatopsis mediterranei Lepetit ME/83, Lepetit ME83/973, Schering 368" Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis mediterranei "Lepetit ME/83, Lepetit ME83/973, Schering 368" 33910 CP100416.1 Bac0023157 "Pseudomonas extremaustralis 14-3, BM, CT14-3, CT 14-3" Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas extremaustralis "14-3, BM, CT14-3, CT 14-3" 359110 LT629689.1 Bac0023158 Corynebacterium tuberculostearicum 911*929/02 Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum 911*929/02 38304 CP069791.1 Bac0023159 Kocuria turfanensis HO-9042 Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria turfanensis HO-9042 388357 CP014480.1 Bac0023160 Roseibium alexandrii DFL-11 Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Stappiaceae Roseibium Roseibium alexandrii DFL-11 388408 CM011002.1 Bac0023161 Sphingorhabdus lacus IMCC1753 Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingorhabdaceae Sphingorhabdus Sphingorhabdus lacus IMCC1753 392610 CP035733.1 Bac0023162 Streptomyces sudanensis SD 504 Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sudanensis SD 504 436397 CP095474.1 Bac0023163 Corynebacterium urealyticum Bajo Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum Bajo 43771 CP066289.1 Bac0023164 Acinetobacter septicus AK001 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter septicus AK001 465797 CP079898.1 Bac0023165 Rubrobacter xylanophilus PRD-1 Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus PRD-1 49319 CP073779.1 Bac0023166 Vibrio azureus LC2-005 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio azureus LC2-005 512649 CP018616.1 Bac0023167 Chryseobacterium gleum F93 Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gleum F93 525257 CP068486.1 Bac0023169 Polynucleobacter acidiphobus MWH-PoolGreenA3 Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Polynucleobacter Polynucleobacter acidiphobus MWH-PoolGreenA3 556053 CP023277.1 Bac0023170 "Xanthomonas cassavae VdM 147, ZD1" Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Xanthomonas Xanthomonas cassavae "VdM 147, ZD1" 56450 CM002139.1 Bac0023171 Olsenella umbonata lac31 Bacillati Actinomycetota Coriobacteriia Coriobacteriales Atopobiaceae Parafannyhessea Parafannyhessea umbonata lac31 604330 LT629759.1 Bac0023172 Caproiciproducens galactitolivorans Bacillati Bacillota Clostridia Eubacteriales Acutalibacteraceae Caproiciproducens Caproiciproducens galactitolivorans 642589 CP041369.1 Bac0023173 Fretibacterium fastidiosum SGP1 Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum SGP1 651822 FP929056.1 Bac0023174 Photobacterium leiognathi L1 Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Photobacterium Photobacterium leiognathi L1 658 CP131601.1 Bac0023175 Microbacterium oryzae MB10 Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oryzae MB10 743009 CP032550.1 Bac0023176 Oceanobacillus kimchii X50 Bacillati Bacillota Bacilli Caryophanales Bacillaceae Oceanobacillus Oceanobacillus kimchii X50 746691 CM001792.1 Bac0023177 Bifidobacterium saguini AFB23-1 Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium saguini AFB23-1 faeces 762210 CP071732.1 Bac0023178 "Liquorilactobacillus nagelii LuE10, LuE10" Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Liquorilactobacillus Liquorilactobacillus nagelii "LuE10, LuE10" oral cavity 82688 CP049304.1 Bac0023179 Psychrobacter sanguinis 13983 Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sanguinis 13983 861445 CP085990.1 Bac0023181 Bacillus timonensis 10403023 "Bacillus timonensis 10403023 is a thermophilic, chemoheterotrophic, gram-positive, rod-shaped bacterium, primarily found in soil and thermal environments, and exhibits obligate aerobic growth. This microbe thrives in high-temperature conditions, making it well-suited to habitats such as hot springs and compost environments, where it plays a crucial role in organic matter decomposition. As a chemoheterotroph, Bacillus timonensis utilizes organic compounds as both carbon and energy sources, distinguishing it from autotrophic organisms that can produce their own food from inorganic substances. Its ability to metabolize complex organic materials allows it to contribute significantly to nutrient cycling in ecosystems. The bacterium’s gram-positive nature indicates a thick peptidoglycan layer in its cell wall, which provides structural integrity and resistance to certain environmental stresses. The rod shape of Bacillus timonensis is typical for the Bacillus genus, allowing for efficient mobility and nutrient absorption in its environment. Its obligate aerobic nature means that it requires oxygen for growth, which aligns with its habitats where atmospheric oxygen is abundant. This characteristic also means it plays a vital role in aerobic decomposition processes, helping to break down organic materials in the presence of oxygen. Beyond its ecological significance, Bacillus timonensis has potential applications in biotechnology and bioremediation. Its enzymes can be harnessed for industrial processes, including the breakdown of organic pollutants and the enhancement of soil fertility. Its adaptability to extreme environments underscores the remarkable resilience of microorganisms and their potential for future scientific exploration in various fields." Eubacteria Firmicutes Bacillales Bacillaceae Bacillus Bacillus timonensis 10403023 Positive Bacilli Facultative anaerobe 1033734 Bac0023182 Bacteroides vulgatus "Bacteroides vulgatus is a mesophilic, chemoheterotrophic, Gram-negative, rod-shaped bacterium predominantly found in the human gut, classified as an obligate anaerobe. This microbe thrives optimally at moderate temperatures, typically between 30-37°C, making it well-suited to the warm environment of the human body. As a chemoheterotroph, Bacteroides vulgatus derives its energy from organic compounds, utilizing carbohydrates, proteins, and lipids as its primary energy sources. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which provides it with unique resistance to certain antibiotics and environmental stresses. Bacteroides vulgatus is a significant member of the gut microbiota, contributing to various body sites, particularly the large intestine, where it plays a pivotal role in digestion and metabolism. This bacterium aids in the breakdown of complex polysaccharides into short-chain fatty acids, which serve as an energy source for colon cells and contribute to overall gut health. Additionally, it competes with pathogenic microbes, thus maintaining a balanced microbiome and preventing dysbiosis. Bacteroides vulgatus is also known for its ability to produce various enzymes, such as glycoside hydrolases and proteases, facilitating the degradation of dietary fibers and proteins. Its presence is crucial in the fermentation process, which leads to the production of beneficial metabolites. Furthermore, emerging research suggests that alterations in the abundance of Bacteroides vulgatus may be associated with various health conditions, including obesity, inflammatory bowel disease, and metabolic syndrome, highlighting its potential role in human health and disease." Eubacteria Bacteroidetes Bacteroidales Bacteroidaceae Phocaeicola Bacteroides vulgatus Positive Bacilli No 0 2 Anaerobe Mesophilic HostAssociated Free living Singles 821 Bac0023186 Eubacterium rectale ATCC 33656 "Eubacterium rectale ATCC 33656 is a Gram-positive, anaerobic bacterium that thrives in temperatures between 37°C and 45°C, categorizing it as psychrotolerant. As a chemoheterotroph, this microbe derives its energy by breaking down organic compounds, specifically utilizing carbohydrates as its primary energy source. Eubacterium rectale produces its energy through anaerobic respiration, converting glucose into lactate. Its Gram-positive nature is characterized by the presence of a thick peptidoglycan layer in its cell wall, which provides structural support and regulates the internal environment. In terms of shape, Eubacterium rectale is a rod-shaped bacterium, commonly referred to as a bacillus. As a member of the body microbiome, it can be found in all body sites, including the gastrointestinal tract, skin, and respiratory tract. Furthermore, this microbe exhibits an obligate anaerobic oxygen preference, meaning it cannot survive in the presence of oxygen and grows best in an anaerobic environment. Eubacterium rectale ATCC 33656 plays a crucial role in maintaining the balance of the human microbiome. It contributes to the breakdown of complex carbohydrates and fiber, producing short-chain fatty acids that help regulate gut health and immune function. Its anaerobic metabolism also enables it to thrive in environments where oxygen levels are low, such as the gastrointestinal tract. In addition to its physiological characteristics, Eubacterium rectale ATCC 33656 has been linked to various diseases, including inflammatory bowel disease and colorectal cancer. Further research on this microbe has the potential to shed light on the complex interactions between the microbiome and human health, paving the way for novel therapeutic approaches." Eubacteria Firmicutes Clostridiales Eubacteriaceae Eubacterium Eubacterium rectale ATCC 33656 Positive Bacilli No 1 Anaerobe Mesophilic HostAssociated Free living Nonsporulating 515619 Bac0023190 Neisseria mucosa "Neisseria mucosa is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic environment, preferring temperatures between 25-37°C. As a chemoheterotroph, it obtains energy by degrading organic compounds and utilizing them as its primary energy source. Its energy production is facilitated through the respiratory chain, where it generates ATP from the breakdown of carbon sources. During gram staining, N. mucosa produces a negative reaction, indicating the absence of peptidoglycan in its cell wall. Its rod-shaped morphology allows it to adapt to various environments, including human body sites such as the oral cavity, respiratory tract, and genitourinary tract. As an opportunistic pathogen, N. mucosa can be found in all body sites, including skin, mucous membranes, and organs. It is an aerotolerant anaerobe, capable of surviving and growing under both aerobic and anaerobic conditions. Oxygen availability can influence its metabolism, as it produces more ATP in the presence of oxygen. Neisseria mucosa is a versatile microbe that can be found in various environments, including humans, animals, and contaminated surfaces. Its ability to thrive in diverse settings and adapt to different oxygen conditions makes it a resilient and widespread microbe. Some unique aspects of Neisseria mucosa include its ability to form biofilms, which contribute to its survival and resistance to environmental stressors. Additionally, its surface proteins play a crucial role in adherence to host cells and immune evasion, allowing it to persist in the body and cause disease." Eubacteria Proteobacteria Neisseriales Neisseriaceae Neisseria Neisseria mucosa Negative Facultative anaerobe 488 Bac0023192 Fusobacterium mortiferum "Fusobacterium mortiferum is a Gram-negative, rod-shaped bacterium that thrives in anaerobic environments with temperatures ranging from 25-45°C, placing it in the mesophilic temperature preference category. As a chemoheterotroph, F. mortiferum derives its energy by breaking down organic matter, its preferred energy source. This process of energy production involves the conversion of glucose and other carbohydrates into pyruvate, which is then fermented into lactic acid, ethanol, or acetate. F. mortiferum's cell walls stain Gram-negative, indicating the presence of a thin peptidoglycan layer, and its rod-shaped morphology allows it to inhabit a wide range of environments. As an anaerobic microorganism, F. mortiferum is unable to survive in the presence of oxygen and instead thrives in environments with low or no oxygen levels, such as the human oral cavity and gastrointestinal tract. F. mortiferum is present on all body sites, including the oral cavity, nasal passages, skin, and gastrointestinal tract, in individuals across all species. Its ability to colonize these areas is due to its specific adaptations to anaerobic environments and its ability to produce enzymes that break down complex organic matter. As an Obligate Anaerobe, F. mortiferum requires a completely oxygen-free environment to carry out its metabolic processes, making it vulnerable to oxygen exposure. The microbe's sensitivity to oxygen is likely a result of the instability of its electron transport chain, which is essential for energy production. In human health, F. mortiferum has been implicated in various diseases, including periodontitis, gingivitis, and colonic diseases. Furthermore, research suggests that this microbe may play a role in the development of certain types of cancer, such as colorectal cancer. Despite its potential pathogenic capabilities, F. mortiferum also has the ability to form symbiotic relationships with its human host, influencing the composition of the microbiome and contributing to overall health." Eubacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum Negative Anaerobe 850 Bac0023195 Eubacterium siraeum "Eubacterium siraeum is a Gram-positive, rod-shaped microbe that thrives in a temperature range of 20-40°C, classified as mesophilic. As a heterotroph, it obtains its energy from the breakdown of organic compounds, rather than via photosynthesis or chemosynthesis. This microbe is able to produce energy through a process of fermentation, where it breaks down complex molecules to derive energy. Eubacterium siraeum is widely distributed and can be found in various body sites across different species, including the human gut, skin, and oral cavity. Its ability to colonize diverse niches is likely due to its tolerance for varying environments and its capacity to adapt to different nutrient availability. The microbe shows an obligate anaerobic preference, meaning it is unable to survive in the presence of oxygen. Instead, it thrives in environments with low oxygen levels or absent oxygen. This adaptation is likely an evolutionary response to the anaerobic conditions found in certain body sites, such as the gastrointestinal tract. Eubacterium siraeum's uniqueness lies in its ability to utilize a wide range of carbon sources, including carbohydrates, proteins, and lipids. This metabolic versatility allows it to thrive in environments with varying nutrient availability. Additionally, its ability to produce various metabolic byproducts, such as short-chain fatty acids, contributes to its importance in maintaining the balance of the gut microbiota. One of the key roles Eubacterium siraeum plays in human health is its involvement in the degradation of complex nutrients, allowing for the absorption of essential nutrients. Its presence in the gut also helps maintain a healthy gut-brain axis, with studies suggesting a link between alterations in the gut microbiota and various neurological disorders. Furthermore, research has implicated Eubacterium siraeum in the development of certain human diseases, such as periodontitis and inflammatory bowel disease. Despite being a relatively understudied microbe, Eubacterium siraeum's importance in human health and disease underscores the need for further research into its biology and ecology." Eubacteria Firmicutes Clostridiales Ruminococcaceae Eubacterium siraeum Positive No 0 Anaerobe Chemoheterotroph Mesophilic Multiple Nonsporulating 39492 Bac0023198 Pseudoflavonifractor capillosus "Pseudoflavonifractor capillosus is a Gram-positive, rod-shaped bacterium that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, skin, and respiratory tract, across different species. As an obligate anaerobe, P. capillosus requires the absence of oxygen to survive and grow, which is reflected in its ability to ferment carbohydrates and produce short-chain fatty acids. The Gram-positive cell wall of P. capillosus provides it with a unique set of interactions with its environment, allowing it to adhere to and colonize various surfaces. Its rod-shaped morphology enables it to maintain a large surface area, facilitating the uptake of nutrients and exchange of waste products. As a mesophilic microorganism, P. capillosus grows optimally at temperatures between 20-45°C, making it well-suited to inhabit a wide range of environments, from the human body to soil and sediment. As a chemoheterotroph, P. capillosus relies on the consumption of organic compounds for energy and growth, breaking down complex molecules into simpler ones. Its presence in various body sites across different species suggests a high degree of adaptability and ability to form symbiotic relationships with its hosts. The ability of P. capillosus to produce short-chain fatty acids has been linked to the regulation of immune responses and the maintenance of a healthy gut microbiome. Pseudoflavonifractor capillosus has been isolated from the gut of certain insects, where it plays a crucial role in the breakdown of complex plant material, allowing the insects to extract essential nutrients." Eubacteria Firmicutes Clostridiales Ruminococcaceae Pseudoflavonifractor Pseudoflavonifractor capillosus Positive Bacilli No 0 Anaerobe Chemoheterotroph Animal intestinal microflora Nonsporulating 106588 Bac0023200 Prevotella copri "Prevotella copri is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites, including the gut, mouth, and skin, across different species. As a Chemoheterotroph, P. copri relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. Its rod-shaped morphology allows it to adapt to diverse environments, from the oral cavity to the gastrointestinal tract. P. copri is an Obligate Anaerobe, requiring the absence of oxygen to survive, which is reflected in its prevalence in low-oxygen niches, such as the gut mucosa.The mesophilic temperature preference of P. copri enables it to flourish in temperatures ranging from 20°C to 45°C, making it well-suited to the human body's temperature range. As a Chemoheterotroph, P. copri plays a crucial role in the degradation of complex polysaccharides, contributing to the balance of the gut microbiome. Its presence in various body sites highlights its ability to colonize and adapt to different environments. The Gram-negative cell wall of P. copri provides it with a degree of resistance to environmental stresses, allowing it to persist in the face of competing microorganisms. ↵P. copri has been implicated in the modulation of the immune system, with studies suggesting that it may influence the production of anti-inflammatory cytokines, potentially contributing to the maintenance of immune homeostasis." Eubacteria Bacteroidetes Bacteroidales Prevotellaceae Prevotella Prevotella copri Negative Anaerobe 165179 Bac0023202 Phocaeicola coprophilus "Megamonas rupellensis is a Gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, respiratory tract, and skin, across different species. As an Obligate Anaerobe, M. rupellensis requires the absence of oxygen to survive and grow. The Gram-negative characteristic indicates that the microbe's cell wall is composed of a thin peptidoglycan layer, which is typically associated with a higher degree of pathogenicity. The rod-shaped morphology allows for efficient movement and colonization in its environment. As a Chemoheterotroph, M. rupellensis relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its metabolic processes. Its presence in various body sites highlights its adaptability and ability to coexist with other microorganisms. The mesophilic temperature preference suggests that M. rupellensis is well-suited to thrive in moderate temperatures, typical of many environmental and host ecosystems. The obligate anaerobic nature of M. rupellensis underscores its sensitivity to oxygen, which can be toxic to the microbe. M. rupellensis plays a significant role in the fermentation of complex carbohydrates, producing short-chain fatty acids that contribute to the health and balance of the host's microbiome, and its unique characteristics have led to its identification as a key player in the degradation of certain pollutants in anaerobic environments." Eubacteria Bacteroidetes Bacteroidales acteroidaceae Phocaeicola Phocaeicola coprophilus Negative No 0 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 387090 Bac0023203 Acidaminococcus fermentans "Acidaminococcus fermentans is a Gram-negative, coccus-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, oral cavity, and urogenital tract, across all possible species, and is an Obligate Anaerobe. The Gram-negative characteristic indicates that the microbe's cell wall contains an outer lipid bilayer, which provides resistance to certain antibiotics. Its coccus shape allows it to maintain a large surface area, facilitating the exchange of nutrients and waste products. As a mesophilic microbe, Acidaminococcus fermentans grows best in temperatures ranging from 20-45°C, making it well-suited to the human body's temperature range.As a Chemoheterotroph, Acidaminococcus fermentans relies on organic compounds for energy and carbon, which it obtains through fermentation. This process involves the breakdown of complex molecules into simpler ones, resulting in the production of short-chain fatty acids and other metabolic byproducts. The microbe's ability to thrive in various body sites is likely due to its adaptability and ability to utilize a wide range of organic substrates.The Obligate Anaerobe characteristic means that Acidaminococcus fermentans requires an oxygen-free environment to survive, which is consistent with its habitat in the human gut and other anaerobic environments. Acidaminococcus fermentans plays a significant role in the fermentation of amino acids, producing compounds that can be used by other microbes or absorbed by the host. Its metabolic activities contribute to the maintenance of a healthy gut microbiome, and its presence has been implicated in various diseases, including inflammatory bowel disease and cancer. The microbe's ability to produce toxic compounds, such as ammonia and amines, can have significant effects on the host's health, highlighting the complex and multifaceted nature of the human-microbe relationship." Eubacteria Firmicutes Acidaminococcales Acidaminococcaceae Acidaminococcus Acidaminococcus fermentans Negative Cocci No 0 2 Anaerobe Mesophilic Multiple Free living Nonsporulating 905 Bac0023205 Coprococcus catus "Coprococcus catus is a Gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in various body sites including the gastrointestinal tract, skin, and mucous membranes of humans and animals. As an Obligate Anaerobe, Coprococcus catus requires a strict absence of oxygen to survive and grow. The Gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, providing resistance to certain environmental stresses. Its cocci shape allows for efficient exchange of nutrients and waste products. As a mesophile, Coprococcus catus grows best in moderate temperatures, typically between 20-45°C, making it well-suited to the human body's normal temperature range.As a Chemoheterotroph, Coprococcus catus relies on organic compounds for energy and carbon sources, breaking down complex molecules into simpler ones to sustain its metabolic processes. This microbe can be found in various body sites, highlighting its versatility and adaptability. The absence of oxygen is crucial for its survival, and it will perish if exposed to aerobic conditions.Coprococcus catus plays a significant role in the fermentation of complex carbohydrates in the gut, producing short-chain fatty acids that provide energy to the host. Its presence has been linked to a healthy gut microbiome, and alterations in its population have been associated with certain gastrointestinal disorders. The unique metabolic capabilities of Coprococcus catus allow it to interact with other microbes in the gut, influencing the overall balance of the microbiota and contributing to the host's overall well-being." Eubacteria Firmicutes Clostridiales Lachnospiraceae Coprococcus Coprococcus catus Positive Cocci No 0 Anaerobe Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 116085 Bac0023206 Oscillibacter valericigenes "Oscillibacter valericigenes is a nonsporulating, mesophilic bacterium predominantly found in the intestinal microflora of various animal species. It is a member of the Firmicutes phylum and plays a significant role in the fermentation processes occurring within the gut environment. As a chemoheterotroph, O. valericigenes derives its energy from organic compounds, contributing to the complex microbial ecosystem that aids in digestion and nutrient absorption.This microbe is notably involved in the production of short-chain fatty acids (SCFAs), particularly valerate, which can serve as a vital energy source for colonic epithelial cells and offer protective benefits against intestinal disorders. The metabolic activity of O. valericigenes may influence gut health by modulating the composition of the gut microbiota and providing essential nutrients, potentially impacting host metabolism and immune response. The presence of Oscillibacter valericigenes highlights the intricate relationship between gut microbiota and host health. Its role in SCFA production underscores the importance of a balanced gut ecosystem, wherein beneficial microbes can outcompete pathogenic bacteria and contribute to overall well-being. This bacterium not only exemplifies the dynamic interactions within the gut microbiome but also suggests avenues for exploring its therapeutic potential in managing gastrointestinal diseases and metabolic disorders." Eubacteria Firmicutes Clostridiales Oscillospiraceae Oscillibacter Oscillibacter valericigenes Positive No 0 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 351091 Bac0023207 Parabacteroides goldsteinii "Parabacteroides goldsteinii is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, classification as a Chemoheterotroph, and can be found in various body sites, including the gut, skin, and oral cavity, across different species. As a Chemoheterotroph, P. goldsteinii relies on organic compounds for energy and carbon, breaking down complex molecules to sustain its growth. Its gram-negative cell wall composition and rod shape allow it to maintain its structure and function effectively. The mesophilic temperature preference of P. goldsteinii enables it to grow optimally in moderate temperatures, typically between 20-45°C, making it well-suited for the human gut environment. As an Obligate Anaerobe, P. goldsteinii requires the absence of oxygen to survive, which is consistent with its habitat in the gut, where oxygen levels are limited. This anaerobic nature allows P. goldsteinii to thrive in the gut microbiome, where it plays a crucial role in the breakdown and utilization of complex nutrients. The presence of P. goldsteinii in the gut has been linked to various health benefits, including the production of short-chain fatty acids, which can help regulate the immune system and maintain a healthy gut barrier. Furthermore, research has shown that P. goldsteinii can produce anti-inflammatory compounds, which may contribute to its potential therapeutic applications in the treatment of inflammatory diseases." Eubacteria Bacteroidetes Bacteroidales Tannerellaceae Parabacteroides Parabacteroides goldsteinii Negative Anaerobe 328812 Bac0023209 Ruminococcus callidus "Ruminococcus callidus is a Gram-positive, cocci-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and can be found in various body sites of humans and animals, including the gastrointestinal tract, mouth, and skin. As an Obligate Anaerobe, Ruminococcus callidus requires a strict anaerobic environment to grow and survive, making it a common inhabitant of the rumen and large intestine where oxygen levels are low. The microbe's Gram-positive cell wall and cocci shape allow it to maintain its structure and withstand the harsh conditions of the gastrointestinal tract. Its mesophilic temperature preference enables it to thrive in temperatures ranging from 20-45°C, which is typical of the human body and many animal hosts. As a Chemoheterotroph, Ruminococcus callidus relies on external sources of organic compounds for energy and carbon, breaking down complex molecules into simpler ones to sustain its growth and metabolism. This microbe plays a crucial role in the degradation of cellulose and other plant-based materials in the rumen, contributing to the nutrition and health of herbivores. Ruminococcus callidus has been found to produce short-chain fatty acids, such as acetate and propionate, which can be used as energy sources by the host, highlighting its importance in the symbiotic relationship between microbes and their hosts." Eubacteria Firmicutes Clostridiales Ruminococcaceae Ruminococcus Ruminococcus callidus Positive Cocci No 0 Anaerobe Chemoheterotroph Animal intestinal microflora Nonsporulating 40519 Bac0023211 Clostridiales bacterium 1_7_47FAA "The Clostridiales bacterium 1_7_47FAA is a Gram-positive, rod-shaped microorganism that thrives in mesophilic temperatures, categorized as a Chemoheterotroph, and can be found in all body sites across various species. As an Obligate Anaerobe, this bacterium requires the absence of oxygen to survive and grow. The Gram-positive characteristic indicates that the bacterium has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the Gram staining procedure, appearing purple under a microscope. Its rod-shaped morphology is typical of many bacterial species, allowing for efficient nutrient uptake and division. The mesophilic temperature preference suggests that the bacterium grows best in moderate temperatures, between 20-45°C, which is common for many microbial species. As a Chemoheterotroph, the bacterium relies on organic compounds for energy and carbon sources, breaking down complex molecules to sustain its metabolic processes. The presence of Clostridiales bacterium 1_7_47FAA in all body sites across various species highlights its adaptability and ability to thrive in diverse environments. The bacterium's obligate anaerobic nature necessitates specialized environments, such as the gut or deep-sea sediments, where oxygen is scarce. This microbe plays a crucial role in decomposing organic matter and recycling nutrients, and its unique metabolic capabilities allow it to produce various bioactive compounds, including antimicrobial peptides and volatile organic compounds that can influence the surrounding microbial community." Eubacteria Firmicutes Clostridiales unclassified Clostridiales unclassified Clostridiales Clostridiales bacterium 1_7_47FAA Uncharacterized Obligate anaerobe 457421 Bac0023215 Haemophilus influenzae PittEE "Haemophilus influenzae PittEE is a gram-negative, rod-shaped bacterium that thrives in moderate temperature conditions, classified as a mesophile. As a chemoheterotroph, it derives energy from organic compounds, relying on nutrients from its environment, which makes it highly adaptable to various ecological niches. This microbe can inhabit a variety of body sites, including the respiratory tract, middle ear, and, occasionally, the bloodstream, highlighting its opportunistic nature in humans. The gram-negative structure of H. influenzae PittEE possesses a thin peptidoglycan layer surrounded by an outer membrane, which is impermeable to many antibiotics, thus posing a challenge in clinical treatment. Its rod shape allows for efficient motility within viscous environments, contributing to its ability to colonize mucosal surfaces. Being a mesophile, this bacterium thrives at temperatures between 20°C to 45°C, which coincides with the temperature of the human body, making it ideally suited to establish infections. As a chemoheterotroph, H. influenzae PittEE is dependent on organic matter for its energy and carbon needs, typically utilizing glucose and other sugars found in host epithelial cells. This dependency also signifies its role as a pathogen in human hosts, where it can lead to diseases such as pneumonia, meningitis, and otitis media. Moreover, this microbe is classified as a facultative anaerobe, enabling it to grow in both aerobic and anaerobic conditions. Its ability to switch between these modes of respiration allows it to thrive in the variable oxygen levels found in different body sites. H. influenzae PittEE is also notable for possessing virulence factors, including polysaccharide capsules, which enhance its ability to evade the host immune response, making it a significant pathogen in clinical microbiology." Eubacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae PittEE Negative Bacilli No 0 2 Aerobe; facultative anaerobe 35 Mesophilic HostAssociated Free living 374930 Bac0023217 Haemophilus influenzae F3031 Eubacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae F3031 Negative Bacilli No 0 2 Facultative Mesophilic HostAssociated Free living 866630 Bac0023218 Haemophilus influenzae F3047 Eubacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae F3047 Negative Bacilli No 0 2 Facultative Mesophilic HostAssociated Free living 935897 Bac0023219 Haemophilus influenzae R2846 "Haemophilus influenzae R2846 is a gram-negative, coccobacillary-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites of humans, including the respiratory tract, bloodstream, and cerebrospinal fluid, as well as in other species such as primates and rodents, and is a facultative anaerobe. The gram-negative characteristic indicates that the microbe's cell wall contains a thin peptidoglycan layer, making it more resistant to certain antibiotics. Its coccobacillary shape allows it to adhere to and colonize host cells, facilitating infection. As a mesophile, Haemophilus influenzae R2846 grows best in moderate temperatures, typically between 35-40°C, which is consistent with the human body's temperature.As a chemoheterotroph, Haemophilus influenzae R2846 relies on organic compounds for energy and carbon, obtaining these nutrients by breaking down host cells and tissues. This microbe can inhabit a wide range of body sites, from the respiratory tract to the bloodstream and cerebrospinal fluid, making it a versatile and potentially virulent pathogen. Its ability to thrive in various environments is also reflected in its classification as a facultative anaerobe, meaning it can survive in both aerobic and anaerobic conditions.Haemophilus influenzae R2846 has been the subject of extensive research due to its role in causing invasive diseases, particularly in children and individuals with compromised immune systems. The microbe's ability to evade the host's immune system and develop resistance to antibiotics has made it a significant concern in public health. Haemophilus influenzae R2846 has a unique ability to form biofilms, which are complex communities of microbes that adhere to surfaces and are notoriously difficult to eradicate, and its genome has been fully sequenced, revealing a complex array of virulence factors and antibiotic resistance genes." Eubacteria Proteobacteria Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae R2846 Negative Bacilli No 0 2 Facultative anaerobe 35 Mesophilic HostAssociated Free living 262727 Bac0023220 Butyrivibrio fibrisolvens 16/4 "Butyrivibrio fibrisolvens 16/4 is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperature conditions, is classified as a chemoheterotroph, and is an obligate anaerobe. This microbe predominantly resides in the gastrointestinal tracts of various ruminant animals, including cattle and sheep, where it plays a crucial role in the fermentation of dietary fibers and the production of short-chain fatty acids, particularly butyrate. The anaerobic nature of B. fibrisolvens means it does not require oxygen for growth, thriving instead in the low-oxygen environments characteristic of the rumen and large intestines of its hosts. The rod-shaped morphology of B. fibrisolvens enables it to maintain a significant surface area for nutrient absorption, enhancing its metabolic capabilities. As a chemoheterotroph, it relies on organic compounds derived from host diets, such as polysaccharides, for energy and carbon, thus participating actively in the digestive processes of ruminants. The fermentation of carbohydrates not only provides energy for the bacteria but also results in the production of butyrate, which is an important energy source for colon cells and contributes to maintaining gut health. Beyond its role in digestion, B. fibrisolvens has the potential to influence overall gut microbiota composition and health. Its ability to produce butyrate is linked to anti-inflammatory properties and may play a role in preventing colonic diseases in ruminants. Furthermore, research into B. fibrisolvens is ongoing, with scientists investigating its potential applications in improving livestock health and performance through dietary interventions that enhance butyrate production in the gut." Eubacteria Firmicutes Clostridiales Lachnospiraceae Butyrivibrio Butyrivibrio fibrisolvens 16-Apr Structurally positive but stains negative Anaerobe 657324 Bac0023221 Prevotella stercorea "Prevotella stercorea is a Gram-negative, rod-shaped bacterium that thrives in warm environments, classifying it as a mesophilic organism. As a chemoheterotroph, it derives its energy and carbon from other organic compounds, primarily those found in the human gastrointestinal tract. This species is predominantly recognized for its presence in the human gut, serving as a crucial component of the microbiome, but it can also be found in various other body sites, including the oral cavity and respiratory tract. P. stercorea is classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen, relying instead on anaerobic environments for growth. Prevotella stercorea is particularly important in the context of human health and disease. It plays a pivotal role in the fermentation of carbohydrates, contributing to the production of short-chain fatty acids (SCFAs) that are essential for gut health. The presence of SCFAs has been associated with various health benefits, including anti-inflammatory effects and the maintenance of gut barrier integrity. Furthermore, shifts in the abundance of P. stercorea within the gut microbiome have been associated with conditions such as obesity and inflammatory bowel diseases, suggesting that it may influence host metabolism and immune responses. Recent studies have explored the functional capabilities of P. stercorea, revealing its potential involvement in polysaccharide degradation, which allows it to thrive on dietary fibers that many other microbes cannot utilize. This ability underscores its significance in maintaining a balanced and diverse gut microbiota, emphasizing the complex interplay between host and microbial populations in health and disease scenarios." Eubacteria Bacteroidetes Bacteroidales Prevotellaceae Prevotella Prevotella stercorea Negative No 0 Anaerobe 37 Chemoheterotroph Mesophilic Animal intestinal microflora Nonsporulating 363265 Bac0023223 Fusobacterium naviforme "Fusobacterium naviforme is a Gram-negative, nonsporulating, mesophilic anaerobe that thrives in the intestinal microflora of animal hosts. This bacterium is classified among the Fusobacteria, a group of anaerobic bacteria known for their role in the gastrointestinal tract. As a chemoheterotroph, Fusobacterium naviforme derives its energy from organic compounds, assimilating nutrients from the complex environment of the intestines. Its optimal growth temperature is around 37°C, aligning with the typical body temperature of mammals, which provides a conducive environment for its metabolic activities. This microbe is notable for its role in maintaining the balance of intestinal microbiota. By competing with pathogenic organisms for resources and metabolic niches, Fusobacterium naviforme helps to stabilize the gut ecosystem. Additionally, it may contribute to digestion and the metabolism of complex carbohydrates, thereby enhancing nutrient absorption for the host. Intriguingly, members of the Fusobacterium genus, including Fusobacterium naviforme, have been implicated in both health and disease, particularly due to their association with various inflammatory conditions. Their presence in the gut highlights the delicate interplay between commensal and pathogenic microbes, emphasizing the significance of microbial diversity in preventing dysbiosis and promoting host health." Eubacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium naviforme Negative No 0 Anaerobic 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Nonsporulating 77917 Bac0023224 Fusobacterium nucleatum subsp. animalis 7_1 "Fusobacterium nucleatum subsp. animalis 7_1 is a Gram-negative, rod-shaped bacterium that thrives in anaerobic conditions, classified as an obligate anaerobe. This microbe prefers mesophilic temperatures, flourishing optimally around 30-37°C. As a chemoheterotroph, it derives energy and carbon from organic compounds, which aligns with its ecological roles in diverse biological environments. Fusobacterium nucleatum subsp. animalis 7_1 is typically found in the oral cavity, gastrointestinal tract, and other mucosal surfaces of various animal species, including humans, where it plays a pivotal role in the complex microbial ecosystems. This organism is known for its ability to adhere to and invade epithelial cells, contributing to its pathogenic potential, especially in polymicrobial infections. The characteristic Gram-negative cell wall structure of F. nucleatum subsp. animalis 7_1 comprises a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides, which can elicit strong immune responses and may lead to inflammatory processes. Its rod-shaped morphology enhances its mobility and ability to colonize various tissues, while the obligate anaerobic nature allows it to thrive in environments devoid of oxygen, such as deep periodontal pockets. Furthermore, the presence of this microbe has been linked to various health conditions, including periodontal disease and even systemic diseases. It is also considered a keystone species in the oral microbiome, meaning its presence can influence the composition and functionality of the microbial community. Recent studies have explored its role in gut health and disease, revealing connections to conditions like colorectal cancer and inflammatory bowel disease. This highlights the complex interplay between host physiology and microbial communities in health and disease." Eubacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum 7_1 Negative Bacilli No 0 2 Anaerobe 37 Mesophilic HostAssociated Free living Nonsporulating 457405 Bac0023225 Fusobacterium nucleatum subsp. polymorphum "Fusobacterium nucleatum subsp. polymorphum is a nonsporulating, anaerobic bacillus that typically exists in pairs, thriving in the mesophilic temperature range with an optimal growth temperature of around 37°C. This bacterium predominantly inhabits the gastrointestinal tract of various hosts, reflecting its role as a commensal organism in the gut microbiota. As a chemoheterotroph, F. nucleatum subsp. polymorphum derives energy through fermentative metabolism, utilizing a variety of organic compounds as its energy sources. This subspecies is part of the larger Fusobacterium genus, which is known for its involvement in both health and disease. While generally considered a part of the normal gut flora, F. nucleatum subsp. polymorphum can also be implicated in the pathogenesis of several conditions, including periodontal disease and certain gastrointestinal disorders. Its ability to survive and thrive in anaerobic environments allows it to play a crucial role in complex microbial communities, often interacting with other species in the gut. A unique ecological insight into F. nucleatum subsp. polymorphum is its potential impact on host health and disease progression. Research suggests that this bacterium may facilitate the dysbiosis associated with inflammatory conditions, contributing to the development of colorectal cancer. Additionally, its interactions with other microbial species highlight the delicate balance within the gut ecosystem, demonstrating how minor shifts in the microbiome can have significant biological consequences for the host." Eubacteria Fusobacteria Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum Negative Bacilli No 0 Anaerobic 37 Chemoheterotroph Mesophilic Host Gut Pairs Nonsporulating 76857 Bac0023229 Schaalia cardiffensis "Schaalia cardiffensis is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, categorizing it as a moderate-temperature organism. As a chemoheterotroph, it derives energy from organic compounds while simultaneously absorbing nutrients from its environment, making it dependent on other organic matter for growth. This microbe has been predominantly isolated from human clinical specimens, particularly in diverse body sites including the skin, respiratory tract, and gastrointestinal system. Notably, it can behave as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen, which affords it adaptability in various environments. The gram-negative nature of Schaalia cardiffensis is significant as it implies a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane. This structural complexity often contributes to its resilience against certain antibiotics, complicating treatment options for infections. Its rod shape facilitates motility in liquid environments, enhancing its ability to colonize various body sites and access nutrients. The mesophilic temperature preference indicates that this bacterium generally thrives in moderate temperature ranges, typically between 20°C and 45°C, which aligns with the environmental conditions found in the human body. The facultative anaerobic lifestyle provides it with metabolic flexibility, allowing it to adapt to fluctuations in oxygen availability and survive in different microenvironments within the host. Schaalia cardiffensis has been notably associated with opportunistic infections, particularly in individuals with compromised immune systems. Its recent identification underscores the importance of ongoing microbial research, as it illustrates the expanding horizon of human-associated bacteria and their potential implications for health and disease. The evolving understanding of such microbes highlights the intricate relationships between humans and their resident microbiota." Eubacteria Actinobacteria Actinomycetales Actinomycetaceae Schaalia Schaalia cardiffensis Positive No 0 Chemoheterotroph Host gut Nonsporulating 181487 Bac0023230 Schaalia radingae "Schaalia radingae is a nonsporulating bacterium classified within the realm of chemoheterotrophs, thriving predominantly in the gut of specific host organisms. This microbe plays a pivotal role in the intricate microbial ecosystems of the gastrointestinal tract, contributing to the digestion and absorption of nutrients. While its Gram stain and cell shape remain uncharacterized, its presence in the gut underscores its importance in symbiotic relationships with its host, potentially aiding in the breakdown of complex carbohydrates and other substrates that are otherwise indigestible. As a gut-associated microbe, Schaalia radingae exists within a dynamic environment where interactions with other microbial species can influence metabolic pathways and overall gut health. The interplay between Schaalia radingae and both the host and other microbes suggests it may be integral to maintaining a balanced microbiome, which is crucial for the host's immunity and metabolism. Furthermore, the study of Schaalia radingae may provide insights into microbial resilience and adaptation in the gut. Understanding how this bacterium interacts with its environment and contributes to the host's physiological processes could lead to novel applications in microbiome research, including therapeutic approaches for digestive disorders. Its presence in the host gut highlights the complexity and interdependence of microbial communities, emphasizing the need for continued research into the roles of lesser-known microorganisms in health and disease." Eubacteria Actinobacteria Actinomycetales Actinomycetaceae Schaalia Schaalia radingae Positive No 0 Chemoheterotroph Host Gut Nonsporulating 131110 Bac0023232 Corynebacterium kroppenstedtii "Corynebacterium kroppenstedtii is a gram-positive, rod-shaped bacterium that is classified as a mesophile, thriving optimally at moderate temperatures. This microbe is a chemoheterotroph, deriving its energy and carbon from organic compounds, and is considered a facultative anaerobe, capable of growth in both the presence and absence of oxygen. Found predominantly on the skin and mucosal surfaces of humans, C. kroppenstedtii can inhabit a variety of body sites, including the respiratory tract, genitourinary tract, and various soft tissues. As a gram-positive organism, C. kroppenstedtii retains the crystal violet stain used in the Gram staining procedure, appearing blue to purple under a microscope. Its rod-shaped morphology contributes to its classification within the Corynebacterium genus, characterized by a unique ""Chinese letter"" arrangement when viewed microscopically. As a mesophile, it flourishes in temperature ranges typically found in the human body, making it well-adapted to its ecological niche. Being a chemoheterotroph means C. kroppenstedtii relies on organic substrates for growth and energy production, distinguishing it from autotrophic microbes that can produce their own food. Its facultative anaerobic nature allows it to survive in environments with varying oxygen availability, making it versatile in colonizing different body sites. Corynebacterium kroppenstedtii is of particular interest due to its potential role in human health and disease. It has been implicated in various clinical conditions, including infections of the skin and soft tissues, yet it also plays a role in the normal microbiota, suggesting a complex relationship with its host. Additionally, its ability to produce unique metabolites raises questions about its impact on human physiology and its potential applications in biotechnology and medicine." Eubacteria Actinobacteria Corynebacteriales Corynebacteriaceae Corynebacterium Corynebacterium kroppenstedtii Positive Bacilli No 0 1 Facultative aerobe Chemoorganotroph Mesophilic HostAssociated Free living Singles Singles 161879 Bac0023233 Olsenella uli "Olsenella uli is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures. It is classified as a chemoheterotroph, which means it derives its energy from organic compounds while also relying on them for carbon sources. This organism is predominantly found in the human oral cavity and gastrointestinal tract, making it an integral member of the complex microbial ecosystems present in these body sites. In more detail, the gram-negative characteristic of Olsenella uli indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structure influences its interactions with the immune system and other microbes. The rod shape contributes to its motility and ability to colonize various niches within the oral cavity and gut, where it can adhere to surfaces and form biofilms. As a mesophilic organism, Olsenella uli prefers moderate temperatures, typically thriving between 30°C and 37°C, which aligns well with the human body temperature, facilitating its survival in the human microbiome. Being a chemoheterotroph, it metabolizes a variety of organic substrates, including carbohydrates and proteins, which are abundant in the oral and digestive environments. Olsenella uli is categorized as an obligate anaerobe, meaning it cannot survive in the presence of oxygen. This lifestyle has led it to adapt to the anaerobic conditions typically found in deep dental plaque and the intestines. Its role in the human microbiome is significant, not only for digestion but also in maintaining oral health, as it can influence the balance of other bacterial species. This microbe has garnered research interest due to its potential implications in health and disease, particularly regarding its association with periodontal disease and its influence on gut health. The precise mechanisms by which Olsenella uli contributes to these conditions are still being investigated, highlighting its relevance in microbiome studies." Eubacteria Actinobacteria Coriobacteriales Atopobiaceae Olsenella Olsenella uli Positive Bacilli No 0 1 Anaerobe 37 Chemoorganotroph Mesophilic HostAssociated Free living Chains - Pairs - Singles Chains - Pairs - Singles 133926 Bac0023236 Anaerofustis stercorihominis "Anaerofustis stercorihominis is a Gram-negative, rod-shaped bacterium that thrives in mesophilic conditions and is classified as a chemoheterotroph. This anaerobic microorganism is predominantly found in the human intestinal tract, where it plays a crucial role in the fermentation of dietary fibers and other complex carbohydrates.Being a member of the Firmicutes phylum, A. stercorihominis exhibits a rod-like morphology that can vary in size but generally appears as elongated bacilli. Its Gram-negative characteristics are indicative of a thinner peptidoglycan layer surrounded by an outer membrane, which often contributes to its resistance to certain antibiotics. As a mesophilic organism, A. stercorihominis prefers moderate temperatures, typically between 30°C to 37°C, making it ideally suited for the human gut environment. As a chemoheterotroph, this microbe relies on organic compounds derived from its host for nourishment, metabolizing them to obtain energy. This metabolic flexibility is essential for surviving in the nutrient-rich gut environment. As an obligate anaerobe, A. stercorihominis flourishes in environments devoid of oxygen, producing metabolic byproducts such as short-chain fatty acids, which are beneficial for gut health and nutrient absorption. A. stercorihominis has recently garnered attention in the field of microbiome research due to its potential role in human health and disease. It is implicated in various metabolic processes and may contribute to the maintenance of gut homeostasis. Moreover, its balance within the gut microbiome is crucial, as dysbiosis involving this microbe has been linked to conditions such as obesity and inflammatory bowel diseases. Understanding its functions and interactions in the gut ecosystem offers exciting implications for therapeutic interventions and probiotic developments." Eubacteria Firmicutes Clostridiales Eubacteriaceae Anaerofustis Anaerofustis stercorihominis Positive Anaerobe 214853 Bac0023237 Blautia faecicola "Blautia faecicola is a coccoid, nonsporulating bacterium that thrives in the anaerobic environment of the intestinal microflora of animals, particularly in humans. As a mesophilic organism, it has an optimal growth temperature of 37°C, aligning with the typical body temperature of warm-blooded hosts. This species is classified as a chemoheterotroph, meaning it derives its energy from organic compounds through a fermentative metabolism.Blautia faecicola plays a vital role in the gut microbiome, contributing to the fermentation of dietary fibers and production of short-chain fatty acids (SCFAs), such as butyrate and acetate. These SCFAs are crucial for maintaining gut health, providing energy to colonocytes, and regulating immune responses. The presence of B. faecicola can influence the overall composition of the gut microbiota, potentially affecting host metabolism and health. Ecologically, Blautia faecicola is significant not only for its role in fermentation and nutrient absorption but also for its contribution to maintaining a balanced gut microbiome. Disturbances in its levels have been linked to various gastrointestinal disorders, suggesting that maintaining a healthy population of B. faecicola could be beneficial for preventing conditions associated with dysbiosis, such as inflammatory bowel disease and obesity. Thus, understanding its function and dynamics within the gut can provide insights into therapeutic strategies targeting gut health." Eubacteria Firmicutes Clostridiales Lachnospiraceae Blautia Blautia faecicola Cocci No 0 Anaerobic 37 Chemoheterotroph Mesophilic Animal Intestinal Microflora Singles Nonsporulating 2509240 Bac0023239 Faecalicatena orotica "Faecalicatena orotica is a nonsporulating chemoheterotrophic microbe found primarily in the intestinal microflora of animals. As a member of the gut microbiome, it plays a significant role in the complex ecosystem of intestinal bacteria, contributing to digestion and nutrient absorption. This bacterium thrives in the anaerobic conditions typical of the intestinal tract, where it interacts with a diverse array of microbial communities.While specific details regarding its Gram stain, shape, and cell arrangement are currently unknown, its classification as a chemoheterotroph indicates that it derives its energy and carbon from organic compounds present in the intestinal environment. This metabolic strategy allows Faecalicatena orotica to coexist with other intestinal microbes, enhancing the breakdown of dietary components and the production of essential metabolites, such as short-chain fatty acids, which are beneficial for host health. The presence of Faecalicatena orotica in the gut highlights the intricate balance of microbial life necessary for maintaining host health. By engaging in symbiotic relationships with other gut bacteria, it contributes to the overall stability and function of the microbiome, which in turn can influence various physiological processes, including immune responses and metabolic functions. This microbe underscores the importance of diverse microbial communities in promoting health and preventing disease in animal hosts." Eubacteria Firmicutes Clostridiales Lachnospiraceae Faecalicatena Faecalicatena orotica No 0 Chemoheterotroph Animal Intestinal Microflora Nonsporulating 1544 Bac0023247 Solobacterium moorei DSM 22971 "Solobacterium moorei DSM 22971 is a Gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, classified as a Chemoheterotroph, and has been found to inhabit various body sites, including the skin, respiratory tract, and gastrointestinal tract, across different species. As an Obligate Anaerobe, this microbe requires a strict absence of oxygen to grow and survive.The Gram-positive characteristic of Solobacterium moorei DSM 22971 indicates the presence of a thick peptidoglycan layer in its cell wall, providing rigidity and shape to the microbe. The rod-shaped morphology allows for efficient movement and colonization of its environment. As a mesophile, Solobacterium moorei DSM 22971 grows best in moderate temperatures, typically between 20-45°C, which is reflective of its adaptation to the human body's temperature. As a Chemoheterotroph, Solobacterium moorei DSM 22971 relies on organic compounds for energy and carbon, breaking down these molecules to sustain its metabolic processes. Its ability to inhabit various body sites, including those with limited oxygen availability, is a testament to its adaptability. The microbe's strict requirement for anaerobic conditions necessitates specialized environments, such as the gastrointestinal tract, where oxygen levels are low. Solobacterium moorei DSM 22971 has been implicated in various human diseases, including acne and other skin conditions, where its unique metabolic capabilities contribute to the disease pathology. Research has shown that this microbe plays a significant role in the degradation of organic compounds, producing short-chain fatty acids that can influence the surrounding microbial community and host immune response. Its presence in the human microbiome highlights the complex interactions between microbes and their hosts, and further study of Solobacterium moorei DSM 22971 may uncover new insights into the development of novel therapeutic strategies." Eubacteria Firmicutes Erysipelotrichales Erysipelotrichaceae Solobacterium Solobacterium moorei DSM 22971 Positive Anaerobe 1123263